PeakID (cmd=annotatePeaks.pl S13_S13_SEACR.relaxed.bed hg38 -annStats S13_S13_SEACR.relaxed.log) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type chrX-33 99548978 99549635 313 - chrX:99549433-99549464 NA NA NA NA NA chrX-32 99447016 99447388 235 - chrX:99447242-99447340 NA NA NA NA NA chrX-31 99378009 99378358 201 - chrX:99378021-99378142 NA NA NA NA NA chrX-30 99275458 99275781 250 - chrX:99275522-99275699 NA NA NA NA NA chrX-29 99017399 99017562 131 - chrX:99017445-99017537 NA NA NA NA NA chrX-28 98121158 98121458 213 - chrX:98121239-98121359 NA NA NA NA NA chrX-27 96576769 96576986 156 - chrX:96576838-96576933 NA NA NA NA NA chrX-26 95917201 95917500 266 - chrX:95917215-95917372 NA NA NA NA NA chrX-25 94732075 94732572 291 - chrX:94732353-94732541 NA NA NA NA NA chrX-24 89073743 89073994 193 - chrX:89073853-89073962 NA NA NA NA NA chrX-23 82345037 82345453 218 - chrX:82345216-82345236 NA NA NA NA NA chrX-22 76727442 76727746 220 - chrX:76727527-76727663 NA NA NA NA NA chrX-21 75999183 75999397 159 - chrX:75999304-75999375 NA NA NA NA NA chrX-20 74232853 74233163 165 - chrX:74232905-74232983 NA NA NA NA NA chrX-19 72518839 72519043 156 - chrX:72518867-72518975 NA NA NA NA NA chrX-18 70795837 70796210 213 - chrX:70796043-70796142 NA NA NA NA NA chrX-17 68425351 68425614 181 - chrX:68425398-68425497 NA NA NA NA NA chrX-16 67086571 67086868 263 - chrX:67086626-67086821 NA NA NA NA NA chrX-15 64747035 64747487 222 - chrX:64747230-64747337 NA NA NA NA NA chrX-14 63308736 63308961 146 - chrX:63308793-63308860 NA NA NA NA NA chrX-13 54876803 54877012 161 - chrX:54876863-54877000 NA NA NA NA NA chrX-12 53753236 53753635 282 - chrX:53753352-53753513 NA NA NA NA NA chrX-11 52331656 52332138 297 - chrX:52331878-52332027 NA NA NA NA NA chrX-10 50790965 50791157 126 - chrX:50791069-50791110 NA NA NA NA NA chrX-9 47365544 47365780 151 - chrX:47365544-47365610 NA NA NA NA NA chrX-8 46994842 46995155 172 - chrX:46994985-46995016 NA NA NA NA NA chrX-7 46728616 46728903 157 - chrX:46728684-46728711 NA NA NA NA NA chrX-6 45819300 45819666 176 - chrX:45819346-45819427 NA NA NA NA NA chrX-5 45599225 45599472 144 - chrX:45599286-45599327 NA NA NA NA NA chrX-4 44694604 44695144 309 - chrX:44694955-44695129 NA NA NA NA NA chrX-3 27036619 27036802 118 - chrX:27036627-27036680 NA NA NA NA NA chrX-2 22723839 22724239 186 - chrX:22723955-22724034 NA NA NA NA NA chrX 20802571 20802770 150 - chrX:20802585-20802714 NA NA NA NA NA chrX-45 155539888 155540081 159 - chrX:155539963-155540054 NA NA NA NA NA chrX-44 154094820 154095146 196 - chrX:154094911-154094938 NA NA NA NA NA chrX-43 153425451 153425672 166 - chrX:153425451-153425507 NA NA NA NA NA chrX-42 152615818 152616394 233 - chrX:152616194-152616216 NA NA NA NA NA chrX-41 134896554 134896992 213 - chrX:134896596-134896680 NA NA NA NA NA chrX-40 127892875 127893136 164 - chrX:127893040-127893073 NA NA NA NA NA chrX-39 121641206 121641669 156 - chrX:121641602-121641621 NA NA NA NA NA chrX-38 117859387 117859679 166 - chrX:117859487-117859501 NA NA NA NA NA chrX-37 111056010 111056335 160 - chrX:111056118-111056245 NA NA NA NA NA chrX-36 105204321 105204652 210 - chrX:105204470-105204587 NA NA NA NA NA chrX-35 102105314 102105622 217 - chrX:102105414-102105549 NA NA NA NA NA chrX-34 100995872 100996221 181 - chrX:100995942-100996004 NA NA NA NA NA chr9-88 99458024 99458438 297 - chr9:99458181-99458329 NA NA NA NA NA chr9-87 99332347 99332566 176 - chr9:99332430-99332531 NA NA NA NA NA chr9-86 99202897 99203239 218 - chr9:99203022-99203116 NA NA NA NA NA chr9-85 98421185 98421369 150 - chr9:98421218-98421333 NA NA NA NA NA chr9-84 98415796 98416117 226 - chr9:98415849-98416001 NA NA NA NA NA chr9-6 9662701 9662994 249 - chr9:9662720-9662925 NA NA NA NA NA chr9-83 96514818 96515170 187 - chr9:96514905-96514927 NA NA NA NA NA chr9-82 94233851 94234237 170 - chr9:94233947-94233955 NA NA NA NA NA chr9-5 9322563 9322811 167 - chr9:9322712-9322764 NA NA NA NA NA chr9-81 93226921 93227333 211 - chr9:93227078-93227110 NA NA NA NA NA chr9-80 91249540 91250125 317 - chr9:91249830-91249868 NA NA NA NA NA chr9-79 90676788 90677188 181 - chr9:90677061-90677077 NA NA NA NA NA chr9-78 88717987 88718599 299 - chr9:88718229-88718236 NA NA NA NA NA chr9-77 85956857 85957343 216 - chr9:85956911-85956965 NA NA NA NA NA chr9-76 85860029 85860514 292 - chr9:85860284-85860383 NA NA NA NA NA chr9-75 85676690 85677118 283 - chr9:85676811-85676925 NA NA NA NA NA chr9-74 84660811 84661006 155 - chr9:84660899-84660990 NA NA NA NA NA chr9-73 84223747 84223940 129 - chr9:84223789-84223832 NA NA NA NA NA chr9-72 82748702 82748991 235 - chr9:82748759-82748943 NA NA NA NA NA chr9-71 82400512 82400788 193 - chr9:82400620-82400730 NA NA NA NA NA chr9-4 8221466 8221745 180 - chr9:8221547-8221637 NA NA NA NA NA chr9-70 81796562 81796774 144 - chr9:81796654-81796754 NA NA NA NA NA chr9-69 80675611 80676142 396 - chr9:80675783-80676052 NA NA NA NA NA chr9-68 80230733 80230967 135 - chr9:80230851-80230906 NA NA NA NA NA chr9-67 80034595 80034966 219 - chr9:80034701-80034791 NA NA NA NA NA chr9-66 79732254 79732841 313 - chr9:79732555-79732594 NA NA NA NA NA chr9-65 79041292 79041666 238 - chr9:79041458-79041628 NA NA NA NA NA chr9-64 78839724 78839869 119 - chr9:78839738-78839819 NA NA NA NA NA chr9-63 77705866 77706181 196 - chr9:77705897-77705974 NA NA NA NA NA chr9-62 76336662 76336921 133 - chr9:76336678-76336748 NA NA NA NA NA chr9-61 75692134 75692363 163 - chr9:75692157-75692254 NA NA NA NA NA chr9-60 74745623 74745878 172 - chr9:74745719-74745860 NA NA NA NA NA chr9-59 74449901 74450270 234 - chr9:74449989-74450196 NA NA NA NA NA chr9-58 73917275 73917557 226 - chr9:73917312-73917463 NA NA NA NA NA chr9-57 73393027 73393267 139 - chr9:73393076-73393114 NA NA NA NA NA chr9-56 73254781 73255405 315 - chr9:73255072-73255078 NA NA NA NA NA chr9-55 73231634 73231995 200 - chr9:73231801-73231840 NA NA NA NA NA chr9-54 71140811 71141123 168 - chr9:71141023-71141115 NA NA NA NA NA chr9-53 70595799 70596369 315 - chr9:70596071-70596131 NA NA NA NA NA chr9-52 69390642 69390942 191 - chr9:69390779-69390861 NA NA NA NA NA chr9-3 5004215 5004406 159 - chr9:5004250-5004345 NA NA NA NA NA chr9-2 4046471 4047148 323 - chr9:4046870-4046884 NA NA NA NA NA chr9-51 38333706 38334216 298 - chr9:38334012-38334192 NA NA NA NA NA chr9-50 37315029 37315453 162 - chr9:37315308-37315348 NA NA NA NA NA chr9-49 37297382 37297552 132 - chr9:37297413-37297469 NA NA NA NA NA chr9-48 37275408 37275829 223 - chr9:37275453-37275478 NA NA NA NA NA chr9-47 37022419 37022792 226 - chr9:37022446-37022525 NA NA NA NA NA chr9-46 36520794 36521082 205 - chr9:36520843-36520982 NA NA NA NA NA chr9-45 35995324 35995522 181 - chr9:35995388-35995484 NA NA NA NA NA chr9-44 35679507 35679803 232 - chr9:35679528-35679696 NA NA NA NA NA chr9-43 35470131 35470682 196 - chr9:35470464-35470589 NA NA NA NA NA chr9-42 34119448 34119685 133 - chr9:34119571-34119676 NA NA NA NA NA chr9-41 34025514 34025912 240 - chr9:34025687-34025757 NA NA NA NA NA chr9-40 33209613 33210119 251 - chr9:33209855-33209971 NA NA NA NA NA chr9-39 31874855 31875126 165 - chr9:31874924-31874983 NA NA NA NA NA chr9-38 31251865 31252148 167 - chr9:31252020-31252071 NA NA NA NA NA chr9-37 31197614 31198103 184 - chr9:31197855-31197978 NA NA NA NA NA chr9-36 30946314 30946604 207 - chr9:30946369-30946410 NA NA NA NA NA chr9-35 30389151 30389482 206 - chr9:30389321-30389402 NA NA NA NA NA chr9-34 30371580 30371768 125 - chr9:30371706-30371768 NA NA NA NA NA chr9-33 30285237 30285809 382 - chr9:30285418-30285610 NA NA NA NA NA chr9-32 30179835 30180194 230 - chr9:30179996-30180129 NA NA NA NA NA chr9-31 29961676 29962285 276 - chr9:29962124-29962132 NA NA NA NA NA chr9-30 29032857 29033374 214 - chr9:29033283-29033317 NA NA NA NA NA chr9-29 28220899 28221135 194 - chr9:28220959-28221132 NA NA NA NA NA chr9-28 27603042 27603456 169 - chr9:27603145-27603265 NA NA NA NA NA chr9-27 27238894 27239105 143 - chr9:27238999-27239074 NA NA NA NA NA chr9-26 27184141 27184422 207 - chr9:27184230-27184289 NA NA NA NA NA chr9-25 27148273 27148734 278 - chr9:27148425-27148520 NA NA NA NA NA chr9-24 27051879 27052217 232 - chr9:27051937-27051971 NA NA NA NA NA chr9-23 26907477 26907902 251 - chr9:26907628-26907670 NA NA NA NA NA chr9-22 26859329 26859621 208 - chr9:26859481-26859605 NA NA NA NA NA chr9-21 26742831 26742990 148 - chr9:26742847-26742980 NA NA NA NA NA chr9-20 24908448 24908795 142 - chr9:24908607-24908708 NA NA NA NA NA chr9-19 24161075 24161271 137 - chr9:24161140-24161218 NA NA NA NA NA chr9-18 21826436 21826664 154 - chr9:21826513-21826605 NA NA NA NA NA chr9-17 21024703 21025285 149 - chr9:21025213-21025237 NA NA NA NA NA chr9-16 19233112 19233400 178 - chr9:19233266-19233378 NA NA NA NA NA chr9 1807800 1808101 184 - chr9:1807946-1808013 NA NA NA NA NA chr9-15 17388494 17388976 212 - chr9:17388657-17388670 NA NA NA NA NA chr9-14 17137659 17137896 118 - chr9:17137831-17137883 NA NA NA NA NA chr9-13 16157936 16158182 163 - chr9:16158071-16158151 NA NA NA NA NA chr9-12 15189474 15189885 264 - chr9:15189615-15189735 NA NA NA NA NA chr9-11 14854410 14854903 369 - chr9:14854450-14854695 NA NA NA NA NA chr9-109 138028665 138028873 162 - chr9:138028689-138028759 NA NA NA NA NA chr9-10 13612353 13612598 128 - chr9:13612500-13612541 NA NA NA NA NA chr9-108 135877115 135877420 170 - chr9:135877308-135877343 NA NA NA NA NA chr9-107 133268415 133268810 155 - chr9:133268676-133268736 NA NA NA NA NA chr9-106 132616420 132616889 275 - chr9:132616717-132616798 NA NA NA NA NA chr9-105 132557898 132558176 133 - chr9:132558015-132558017 NA NA NA NA NA chr9-104 130364233 130364615 259 - chr9:130364500-130364564 NA NA NA NA NA chr9-103 129189675 129189861 147 - chr9:129189699-129189807 NA NA NA NA NA chr9-9 12660636 12660976 279 - chr9:12660686-12660904 NA NA NA NA NA chr9-102 125309816 125310414 320 - chr9:125310113-125310174 NA NA NA NA NA chr9-101 122329454 122329704 134 - chr9:122329587-122329673 NA NA NA NA NA chr9-100 120533514 120533724 196 - chr9:120533515-120533704 NA NA NA NA NA chr9-99 113361373 113361547 145 - chr9:113361408-113361524 NA NA NA NA NA chr9-98 111855873 111856065 130 - chr9:111856011-111856041 NA NA NA NA NA chr9-97 111430135 111430480 324 - chr9:111430145-111430427 NA NA NA NA NA chr9-96 108584113 108584596 192 - chr9:108584254-108584275 NA NA NA NA NA chr9-8 10630004 10630279 174 - chr9:10630089-10630136 NA NA NA NA NA chr9-95 106080301 106080711 306 - chr9:106080339-106080475 NA NA NA NA NA chr9-94 106001393 106001666 123 - chr9:106001550-106001598 NA NA NA NA NA chr9-93 105665033 105665291 149 - chr9:105665186-105665226 NA NA NA NA NA chr9-92 105609238 105609415 140 - chr9:105609251-105609317 NA NA NA NA NA chr9-7 10544492 10544708 130 - chr9:10544619-10544663 NA NA NA NA NA chr9-91 104507713 104508026 239 - chr9:104507817-104507967 NA NA NA NA NA chr9-90 103773869 103774691 276 - chr9:103774127-103774190 NA NA NA NA NA chr9-89 100274112 100274412 211 - chr9:100274207-100274353 NA NA NA NA NA chr8-127 99798032 99798473 235 - chr8:99798085-99798217 NA NA NA NA NA chr8-126 99483535 99483755 124 - chr8:99483602-99483630 NA NA NA NA NA chr8-125 99154524 99154853 193 - chr8:99154556-99154613 NA NA NA NA NA chr8-124 98232317 98232527 153 - chr8:98232361-98232400 NA NA NA NA NA chr8-2 9680890 9681097 145 - 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chr8:86671255-86671357 NA NA NA NA NA chr8-108 86510202 86510420 193 - chr8:86510287-86510407 NA NA NA NA NA chr8-107 86487955 86488201 141 - chr8:86487982-86488057 NA NA NA NA NA chr8-106 85989772 85990144 185 - chr8:85990029-85990073 NA NA NA NA NA chr8-105 85400743 85401226 240 - chr8:85400743-85400801 NA NA NA NA NA chr8-104 84882969 84883219 209 - chr8:84883031-84883199 NA NA NA NA NA chr8-103 84703470 84703766 180 - chr8:84703581-84703640 NA NA NA NA NA chr8-102 84154951 84155198 178 - chr8:84155032-84155153 NA NA NA NA NA chr8-101 84065897 84066159 177 - chr8:84065943-84065996 NA NA NA NA NA chr8-100 83950575 83950956 246 - chr8:83950731-83950843 NA NA NA NA NA chr8-99 83934961 83935361 276 - chr8:83935029-83935197 NA NA NA NA NA chr8-98 83732268 83732675 270 - chr8:83732496-83732629 NA NA NA NA NA chr8-97 83479517 83480018 241 - chr8:83479858-83479969 NA NA NA NA NA chr8-96 83430888 83431037 128 - chr8:83430929-83431015 NA NA NA NA NA chr8-95 83427808 83428069 165 - chr8:83427920-83427989 NA NA NA NA NA chr8-94 83302260 83302710 230 - 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chr10:5899118-5899252 NA NA NA NA NA chr10-78 58380154 58380401 127 - chr10:58380287-58380294 NA NA NA NA NA chr10-77 57242477 57242947 330 - chr10:57242628-57242829 NA NA NA NA NA chr10-76 57149720 57150031 154 - chr10:57149845-57149858 NA NA NA NA NA chr10-75 56601447 56601730 211 - chr10:56601484-56601623 NA NA NA NA NA chr10-74 56595016 56595248 186 - chr10:56595137-56595231 NA NA NA NA NA chr10-73 56272511 56272806 229 - chr10:56272612-56272747 NA NA NA NA NA chr10-72 55137252 55137614 298 - chr10:55137350-55137584 NA NA NA NA NA chr10-71 55068244 55068459 192 - chr10:55068290-55068459 NA NA NA NA NA chr10-70 54531505 54531710 162 - chr10:54531616-54531701 NA NA NA NA NA chr10-69 53950860 53951125 168 - chr10:53950960-53951043 NA NA NA NA NA chr10-68 53644455 53644640 171 - chr10:53644480-53644581 NA NA NA NA NA chr10-67 53259542 53259711 135 - chr10:53259587-53259654 NA NA NA NA NA chr10-66 53144105 53144455 235 - chr10:53144234-53144446 NA NA NA NA NA chr10-65 51508802 51509299 285 - chr10:51508843-51508900 NA NA NA NA NA chr10-64 50203458 50203712 158 - chr10:50203499-50203561 NA NA NA NA NA chr10-63 49344130 49344362 139 - chr10:49344250-49344296 NA NA NA NA NA chr10-62 47265560 47265937 232 - chr10:47265627-47265714 NA NA NA NA NA chr10-61 44837329 44837591 165 - chr10:44837408-44837458 NA NA NA NA NA chr10-60 44540714 44541185 194 - chr10:44541029-44541098 NA NA NA NA NA chr10-59 44480023 44480331 216 - chr10:44480116-44480241 NA NA NA NA NA chr10-58 44374937 44375192 216 - chr10:44374960-44375137 NA NA NA NA NA chr10-57 43831031 43831668 349 - chr10:43831159-43831348 NA NA NA NA NA chr10-56 43695058 43695294 149 - chr10:43695155-43695257 NA NA NA NA NA chr10-55 41811313 41811667 248 - chr10:41811446-41811641 NA NA NA NA NA chr10-54 39222960 39223320 215 - chr10:39223032-39223102 NA NA NA NA NA chr10-53 39180229 39180716 247 - chr10:39180288-39180355 NA NA NA NA NA chr10-52 37855742 37856085 227 - chr10:37855867-37856036 NA NA NA NA NA chr10 3768927 3769228 239 - chr10:3769024-3769201 NA NA NA NA NA chr10-51 36163993 36164267 246 - chr10:36164010-36164200 NA NA NA NA NA chr10-50 36042167 36042381 145 - chr10:36042285-36042361 NA NA NA NA NA chr10-49 35691297 35691670 205 - chr10:35691425-35691462 NA NA NA NA NA chr10-48 34903125 34903356 117 - chr10:34903179-34903255 NA NA NA NA NA chr10-47 34823746 34824182 211 - chr10:34823823-34823883 NA NA NA NA NA chr10-46 34474346 34474587 128 - chr10:34474527-34474542 NA NA NA NA NA chr10-45 33915283 33915576 150 - chr10:33915435-33915452 NA NA NA NA NA chr10-44 33898304 33898548 127 - chr10:33898425-33898435 NA NA NA NA NA chr10-43 33127453 33127616 141 - chr10:33127472-33127591 NA NA NA NA NA chr10-42 32949162 32949552 205 - chr10:32949207-32949339 NA NA NA NA NA chr10-41 31171940 31172299 225 - chr10:31172021-31172059 NA NA NA NA NA chr10-40 30886149 30886328 162 - chr10:30886160-30886299 NA NA NA NA NA chr10-39 29631843 29632197 189 - chr10:29631990-29632146 NA NA NA NA NA chr10-38 29096852 29097053 140 - chr10:29096929-29097008 NA NA NA NA NA chr10-37 28354382 28354597 159 - chr10:28354443-28354490 NA NA NA NA NA chr10-36 28242411 28242824 247 - chr10:28242523-28242685 NA NA NA NA NA chr10-35 25732818 25733121 176 - chr10:25732963-25733030 NA NA NA NA NA chr10-34 25529687 25529974 207 - chr10:25529724-25529851 NA NA NA NA NA chr10-33 25362582 25362786 154 - chr10:25362604-25362708 NA NA NA NA NA chr10-32 25009136 25009338 124 - chr10:25009252-25009337 NA NA NA NA NA chr10-31 24392652 24393018 185 - chr10:24392983-24392987 NA NA NA NA NA chr10-30 23677831 23677959 118 - chr10:23677849-23677947 NA NA NA NA NA chr10-29 22418350 22418506 127 - chr10:22418394-22418492 NA NA NA NA NA chr10-28 21685873 21686063 153 - chr10:21685962-21686041 NA NA NA NA NA chr10-27 21392035 21392349 243 - chr10:21392155-21392327 NA NA NA NA NA chr10-26 21167389 21167609 147 - chr10:21167422-21167456 NA NA NA NA NA chr10-25 20760724 20760872 114 - chr10:20760760-20760839 NA NA NA NA NA chr10-24 20651579 20651919 274 - chr10:20651697-20651905 NA NA NA NA NA chr10-23 20232152 20232492 173 - chr10:20232424-20232430 NA NA NA NA NA chr10-22 20134702 20134940 132 - chr10:20134822-20134848 NA NA NA NA NA chr10-21 19497701 19497968 208 - chr10:19497728-19497840 NA NA NA NA NA chr10-20 18803142 18803550 184 - chr10:18803174-18803230 NA NA NA NA NA chr10-19 18640371 18640950 347 - chr10:18640739-18640854 NA NA NA NA NA chr10-18 17769644 17769858 150 - chr10:17769766-17769852 NA NA NA NA NA chr10-17 17040042 17040333 203 - chr10:17040064-17040223 NA NA NA NA NA chr10-16 16992492 16992701 141 - chr10:16992524-16992597 NA NA NA NA NA chr10-15 16131167 16131464 208 - chr10:16131289-16131319 NA NA NA NA NA chr10-14 14344779 14344950 145 - chr10:14344791-14344854 NA NA NA NA NA chr10-13 13677563 13677759 119 - chr10:13677602-13677644 NA NA NA NA NA chr10-12 13511976 13512156 154 - chr10:13512018-13512120 NA NA NA NA NA chr10-186 128961613 128961776 134 - chr10:128961651-128961756 NA NA NA NA NA chr10-185 128840961 128841454 200 - chr10:128841354-128841361 NA NA NA NA NA chr10-184 126567172 126567371 125 - chr10:126567222-126567273 NA NA NA NA NA chr10-183 125751458 125751790 260 - chr10:125751463-125751687 NA NA NA NA NA chr10-182 125609747 125610273 264 - chr10:125610017-125610051 NA NA NA NA NA chr10-181 123988132 123988314 135 - chr10:123988189-123988277 NA NA NA NA NA chr10-180 122873485 122873638 118 - chr10:122873490-122873601 NA NA NA NA NA chr10-179 122816033 122816357 214 - chr10:122816123-122816350 NA NA NA NA NA chr10-178 120329655 120329872 196 - chr10:120329766-120329869 NA NA NA NA NA chr10-177 119983903 119984087 162 - chr10:119983911-119984051 NA NA NA NA NA chr10-176 118569078 118569626 303 - chr10:118569199-118569265 NA NA NA NA NA chr10-175 118415275 118415750 266 - chr10:118415414-118415417 NA NA NA NA NA chr10-174 116656127 116656358 221 - chr10:116656130-116656346 NA NA NA NA NA chr10-11 11655810 11656547 278 - chr10:11656425-11656524 NA NA NA NA NA chr10-173 116425493 116425916 341 - chr10:116425538-116425580 NA NA NA NA NA chr10-172 116384376 116384748 194 - chr10:116384612-116384625 NA NA NA NA NA chr10-171 116357390 116357581 133 - chr10:116357400-116357475 NA NA NA NA NA chr10-170 115596525 115596968 289 - chr10:115596563-115596775 NA NA NA NA NA chr10-169 114657931 114658158 131 - chr10:114658077-114658112 NA NA NA NA NA chr10-168 114500925 114501390 198 - chr10:114501230-114501313 NA NA NA NA NA chr10-10 11425825 11426247 193 - chr10:11425909-11425989 NA NA NA NA NA chr10-167 113644571 113644997 292 - chr10:113644630-113644788 NA NA NA NA NA chr10-166 113627609 113628295 377 - chr10:113627734-113627768 NA NA NA NA NA chr10-165 109661065 109661326 166 - chr10:109661183-109661254 NA NA NA NA NA chr10-164 109160694 109160933 235 - chr10:109160700-109160931 NA NA NA NA NA chr10-163 108648578 108649020 182 - chr10:108648696-108648809 NA NA NA NA NA chr10-162 108294057 108294293 156 - chr10:108294162-108294218 NA NA NA NA NA chr10-161 108158305 108158528 170 - chr10:108158439-108158503 NA NA NA NA NA chr10-160 107182171 107182545 288 - chr10:107182193-107182309 NA NA NA NA NA chr10-159 106823023 106823225 189 - chr10:106823044-106823216 NA NA NA NA NA chr10-158 106742553 106742903 176 - chr10:106742704-106742793 NA NA NA NA NA chr10-157 106639698 106640114 216 - chr10:106639780-106639896 NA NA NA NA NA chr10-9 10642388 10642540 137 - chr10:10642411-10642529 NA NA NA NA NA chr10-156 105709161 105709718 301 - chr10:105709482-105709655 NA NA NA NA NA chr10-155 105557441 105557692 214 - chr10:105557511-105557688 NA NA NA NA NA chr10-154 105535678 105536027 143 - chr10:105535714-105535787 NA NA NA NA NA chr10-153 105490261 105490418 121 - chr10:105490327-105490412 NA NA NA NA NA chr10-152 104393309 104393727 300 - chr10:104393358-104393599 NA NA NA NA NA chr10-151 104377963 104378196 134 - chr10:104378041-104378097 NA NA NA NA NA chr10-150 103998293 103998807 264 - chr10:103998318-103998512 NA NA NA NA NA chr10-149 103939845 103940108 175 - chr10:103939882-103939969 NA NA NA NA NA chr10-148 103145383 103146082 293 - chr10:103145394-103145517 NA NA NA NA NA chr10-147 102625320 102625717 240 - chr10:102625435-102625518 NA NA NA NA NA chr10-146 100695186 100695528 325 - chr10:100695190-100695481 NA NA NA NA NA 987 chr17_KI270729v1_random 27545 28194 + 5.83333 NA NA (GAATG)n|Satellite|Satellite NA NA 987.166 chrUn_KI270466v1 465 1185 + 4 NA NA SAR|Satellite|Satellite NA NA 714.666 chr2 121627594 121627925 + 3.66667 NA intron (NM_015282, intron 1 of 38) intron (NM_015282, intron 1 of 38) 21703 NM_015282 23332 Hs.469840 NM_015282 ENSG00000074054 CLASP1 MAST1 cytoplasmic linker associated protein 1 protein-coding 651 chr5 11442231 11442660 + 3.5 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 146472 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 1131 chrUn_KI270438v1 104007 105099 + 3.33333 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 600 chr12 62325365 62325835 + 3.33333 NA intron (NR_147080, intron 5 of 19) intron (NR_147080, intron 5 of 19) 65196 NR_147082 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 521 chr2 23188621 23188894 + 3.16667 NA Intergenic MIRb|SINE|MIR -196422 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 552.834 chr7 23381179 23381520 + 3.16667 NA intron (NM_006547, intron 3 of 14) MIRb|SINE|MIR -15097 NR_145734 109616981 NR_145734 ENSG00000212264 SNORD65C - small nucleolar RNA, C/D box 65C snoRNA 822.333 chr10 43624093 43624637 + 3.16667 NA Intergenic MER21B|LTR|ERVL -4452 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 422.333 chr2 102676691 102677017 + 3 NA intron (NM_003048, intron 3 of 11) intron (NM_003048, intron 3 of 11) 57301 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 368.5 chr4 49657506 49657735 + 3 NA Intergenic (GAATG)n|Satellite|Satellite 670978 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 675.5 chr1 41247323 41248013 + 3 NA Intergenic L3|LINE|CR1 -5362 NM_001350667 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 466.5 chr12 14050716 14050955 + 3 NA Intergenic Intergenic -70479 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 347.667 chr1 113582125 113582311 + 3 NA intron (NM_001142782, intron 3 of 20) L1ME3Cz|LINE|L1 176937 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 632.5 chr7 8912038 8912615 + 3 NA Intergenic Intergenic 478717 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 327.333-13 chr6 53841329 53841522 + 2.83333 NA intron (NM_018214, intron 1 of 13) HAL1|LINE|L1 46420 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 752.833 chr11 31010629 31011038 + 2.83333 NA intron (NM_001367979, intron 20 of 38) intron (NM_001367979, intron 20 of 38) -18147 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 461.5 chr2 49434112 49434367 + 2.83333 NA Intergenic L1ME3A|LINE|L1 -279712 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 435.333 chr12 33922700 33922909 + 2.83333 NA Intergenic L1PREC2|LINE|L1 -99692 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 452.5-4 chr6 129029497 129029691 + 2.83333 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 146453 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 585.666 chr8 112997458 112997793 + 2.83333 NA intron (NM_198123, intron 6 of 70) intron (NM_198123, intron 6 of 70) 354132 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 698 chr16 46393979 46394890 + 2.83333 NA Intergenic Intergenic 174663 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 544.5 chr18 46899777 46900068 + 2.83333 NA intron (NM_001324053, intron 3 of 15) intron (NM_001324053, intron 3 of 15) 17585 NM_001354033 9063 Hs.57769 NM_004671 ENSG00000078043 PIAS2 ARIP3|DIP|MIZ1|PIASX|SIZ2|ZMIZ4 protein inhibitor of activated STAT 2 protein-coding 468.833 chr3 157866494 157866719 + 2.83333 NA Intergenic (ATATTTG)n|Simple_repeat|Simple_repeat 239557 NM_006884 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 592.333 chr9 69205652 69206003 + 2.83333 NA intron (NM_001170416, intron 1 of 22) intron (NM_001170416, intron 1 of 22) 672 NM_001170416 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 557.999 chr10 11456950 11457203 + 2.83333 NA 3' UTR (NM_014688, exon 15 of 15) 3' UTR (NM_014688, exon 15 of 15) 75204 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 628.167-2 chr5 74338475 74338973 + 2.66667 NA Intergenic MER97b|DNA|hAT-Tip100 16238 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 503.667 chr16 59137795 59138198 + 2.66667 NA Intergenic L1MCc|LINE|L1 -403680 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 361.334-2 chr15 68571099 68571357 + 2.66667 NA intron (NM_001324014, intron 2 of 12) intron (NM_001324014, intron 2 of 12) -7765 NM_006091 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 487.334-2 chr3 83599289 83599500 + 2.66667 NA Intergenic Intergenic 1270181 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 392.167-2 chr16 67054316 67054679 + 2.66667 NA intron (NM_001368708, intron 3 of 4) HAL1|LINE|L1 25348 NM_001368708 865 Hs.460988 NM_001755 ENSG00000067955 CBFB PEBP2B core-binding factor subunit beta protein-coding 425.501-2 chr8 104005836 104006149 + 2.66667 NA intron (NM_001348500, intron 15 of 20) intron (NM_001348500, intron 15 of 20) 186772 NM_001348502 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 596 chr15 76366781 76367147 + 2.66667 NA intron (NR_148227, intron 30 of 32) intron (NR_148227, intron 30 of 32) 30191 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 500 chr10 102993317 102993699 + 2.66667 NA intron (NM_199076, intron 1 of 6) L1MEd|LINE|L1 -75173 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 231-23 chr4 91596312 91596458 + 2.66667 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 680917 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 392.001 chr10 55773550 55773737 + 2.66667 NA Intergenic L2a|LINE|L2 -145701 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 595.668 chr9 78830877 78831338 + 2.66667 NA Intergenic Intergenic 314559 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 677.5 chr2 77275182 77275573 + 2.66667 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 246999 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 495.167-2 chr6 68873423 68873805 + 2.66667 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 238332 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 347.833 chr1 169964736 169965152 + 2.66667 NA intron (NM_014970, intron 17 of 19) intron (NM_014970, intron 17 of 19) -70985 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 464.5 chr10 7728903 7729180 + 2.66667 NA intron (NM_002216, intron 11 of 20) AluSx|SINE|Alu 25725 NM_002216 3698 Hs.75285 NM_002216 ENSG00000151655 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 481.167 chr19 34762999 34763315 + 2.66667 NA intron (NM_001007248, intron 3 of 3) L1ME3F|LINE|L1 10058 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 372.667-2 chr10 122732449 122732662 + 2.66667 NA Intergenic Charlie16a|DNA|hAT-Charlie -24139 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 415.834-2 chr6 55969542 55969927 + 2.66667 NA Intergenic Intergenic -94144 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 423.333-2 chr7 53416219 53416540 + 2.66667 NA Intergenic L2|LINE|L2 380746 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 446 chr9 103840230 103840691 + 2.66667 NA Intergenic Intergenic -159249 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 422.667-2 chr11 93154629 93154818 + 2.66667 NA intron (NM_152313, intron 9 of 10) MamRTE1|LINE|RTE-BovB 42703 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 307.667-4 chr11 60659750 60660165 + 2.66667 NA intron (NR_026946, intron 5 of 6) MIRb|SINE|MIR -39655 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 474-3 chr18 29895846 29896196 + 2.66667 NA Intergenic L1MC3|LINE|L1 -402889 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 369.333-3 chr8 137646398 137646654 + 2.66667 NA Intergenic Intergenic -232938 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 461-2 chr3 118655862 118656099 + 2.66667 NA intron (NR_135547, intron 2 of 3) L1M1|LINE|L1 14212 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 543.334 chr17 56865162 56865654 + 2.66667 NA 3' UTR (NM_003647, exon 12 of 12) 3' UTR (NM_003647, exon 12 of 12) 19505 NR_027025 246754 Hs.720736 NR_027025 MTVR2 - mouse mammary tumor virus receptor homolog 2 pseudo 459.834 chr8 104204619 104204878 + 2.66667 NA intron (NM_001348498, intron 20 of 24) intron (NM_001348498, intron 20 of 24) -18587 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 462.834-2 chr7 27775226 27775492 + 2.66667 NA intron (NM_001362794, intron 5 of 16) intron (NM_001362794, intron 5 of 16) 35264 NM_001079864 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 473.334-2 chr2 216322906 216323149 + 2.66667 NA intron (NM_020814, intron 1 of 3) intron (NM_020814, intron 1 of 3) 49456 NM_020814 57574 Hs.170388 NM_020814 ENSG00000144583 MARCH4 MARCH-IV|RNF174 membrane associated ring-CH-type finger 4 protein-coding 503.5 chr6 91014071 91014345 + 2.5 NA Intergenic Intergenic -427136 NM_145331 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 396-3 chr17 22602428 22602657 + 2.5 NA Intergenic MSTC|LTR|ERVL-MaLR 79431 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 331-3 chr14 87307267 87307537 + 2.5 NA Intergenic Intergenic 347892 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 342.5-10 chr7 40879266 40879469 + 2.5 NA Intergenic L1MC5a|LINE|L1 100572 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 536 chr8 80026090 80026322 + 2.5 NA intron (NM_014018, intron 1 of 2) Charlie15b|DNA|hAT-Charlie 4053 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 436.5 chr7 88744527 88744791 + 2.5 NA Intergenic L1ME4c|LINE|L1 -15041 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 523 chr21 30483887 30484403 + 2.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 3291 NM_181608 337969 Hs.553692 NM_181608 ENSG00000186965 KRTAP19-2 KAP19.2 keratin associated protein 19-2 protein-coding 510.167-2 chr3 86869930 86870324 + 2.5 NA Intergenic Intergenic 121022 NM_001320494 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 571-2 chr5 93900784 93901201 + 2.5 NA intron (NR_028080, intron 4 of 8) intron (NR_028080, intron 4 of 8) -159392 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 535.166 chr15 66410202 66410584 + 2.5 NA intron (NM_002755, intron 1 of 10) intron (NM_002755, intron 1 of 10) 23520 NM_002755 5604 Hs.145442 NM_002755 ENSG00000169032 MAP2K1 CFC3|MAPKK1|MEK1|MKK1|PRKMK1 mitogen-activated protein kinase kinase 1 protein-coding 341.5-2 chr11 27840372 27840597 + 2.5 NA Intergenic Intergenic -118454 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 357.5-2 chr12 125307947 125308164 + 2.5 NA intron (NM_001366854, intron 1 of 8) (TA)n|Simple_repeat|Simple_repeat -18561 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 610.167 chr7 106620590 106621059 + 2.5 NA Intergenic Intergenic 40334 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 451.5 chr13 37781978 37782247 + 2.5 NA intron (NM_003306, intron 2 of 10) intron (NM_003306, intron 2 of 10) 88313 NM_001354799 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 341.667 chr11 25462829 25463065 + 2.5 NA Intergenic L1M4a1|LINE|L1 -726176 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 444 chr1 105505258 105505509 + 2.5 NA Intergenic L1MA9|LINE|L1 113552 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 470 chr14 84891916 84892154 + 2.5 NA Intergenic Intergenic -379897 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 526.334 chr3 30791230 30792016 + 2.5 NA intron (NM_207359, intron 12 of 14) intron (NM_207359, intron 12 of 14) 103038 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 338.333-6 chr5 163883547 163883693 + 2.5 NA Intergenic L1ME3A|LINE|L1 378001 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 329.5-7 chr15 25936269 25936531 + 2.5 NA intron (NR_040082, intron 1 of 4) intron (NR_040082, intron 1 of 4) 34040 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 397.333-2 chr11 94820458 94820697 + 2.5 NA intron (NM_130847, intron 3 of 12) MER1A|DNA|hAT-Charlie 52221 NM_001301007 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 262.166-2 chr7 33394760 33394976 + 2.5 NA intron (NM_001348037, intron 18 of 20) MIRb|SINE|MIR 265304 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 323.834 chr7 40508638 40508830 + 2.5 NA intron (NM_001193312, intron 11 of 12) L1M4b|LINE|L1 373758 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 383.667-4 chr2 58162189 58162501 + 2.5 NA intron (NR_156742, intron 7 of 9) intron (NR_156742, intron 7 of 9) 79035 NR_156742 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 404.667-2 chr13 67778444 67778745 + 2.5 NA Intergenic Intergenic 406207 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 240.667-44 chr8 101364083 101364211 + 2.5 NA Intergenic Intergenic -4746 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 721.333 chr8 83609478 83610138 + 2.5 NA Intergenic Intergenic 206050 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 553.333 chr8 72553418 72553762 + 2.5 NA intron (NM_004770, intron 1 of 2) intron (NM_004770, intron 1 of 2) 16365 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 420.666 chr8 89617765 89617994 + 2.5 NA Intergenic Intergenic 139832 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 473.833 chr21 31313896 31314212 + 2.5 NA intron (NM_001353686, intron 2 of 27) intron (NM_001353686, intron 2 of 27) 30300 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 354.5-6 chr7 13455894 13456087 + 2.5 NA Intergenic L1M5|LINE|L1 530524 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 434-3 chr8 115849893 115850120 + 2.5 NA Intergenic L1M5|LINE|L1 -181031 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 585.501 chr10 59078062 59078427 + 2.5 NA Intergenic Intergenic 78726 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 437 chr3 131358930 131359222 + 2.5 NA intron (NR_038976, intron 2 of 3) L1MC5|LINE|L1 -2769 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 312.5-5 chr2 83661169 83661329 + 2.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 138435 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 712.167-2 chr4 49061199 49061625 + 2.5 NA intron (NM_001286791, intron 15 of 15) intron (NM_001286791, intron 15 of 15) 74770 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 488.499 chr18 60233786 60234105 + 2.5 NA Intergenic Intergenic 138830 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 355-10 chr6 36450713 36451334 + 2.5 NA intron (NR_104481, intron 1 of 3) 7SLRNA|srpRNA|srpRNA 8023 NM_001286579 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 483.333 chr12 43323926 43324175 + 2.5 NA Intergenic Intergenic 168735 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 350.834 chr12 25202865 25203110 + 2.5 NA intron (NM_001001660, intron 1 of 2) L1MC4|LINE|L1 7750 NM_001001660 144363 Hs.209151 NM_001001660 ENSG00000205707 ETFRF1 LYRM5 electron transfer flavoprotein regulatory factor 1 protein-coding 328.333-4 chr4 65371679 65372143 + 2.5 NA intron (NM_182472, intron 8 of 16) intron (NM_182472, intron 8 of 16) 297577 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 532.834 chr5 124913830 124914302 + 2.5 NA Intergenic Intergenic -122765 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 504.666 chr7 131238108 131238510 + 2.5 NA intron (NM_001145354, intron 2 of 18) L3|LINE|CR1 89470 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 345.5-6 chr6 65365919 65366122 + 2.5 NA intron (NM_198283, intron 7 of 9) intron (NM_198283, intron 7 of 9) 64602 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 447.666 chr4 169589664 169590063 + 2.5 NA intron (NM_001199400, intron 5 of 32) L1MB7|LINE|L1 22720 NM_001199399 4750 Hs.481181 NM_012224 ENSG00000137601 NEK1 ALS24|NY-REN-55|SRPS2|SRPS2A|SRTD6 NIMA related kinase 1 protein-coding 253-17 chr4 86723063 86723338 + 2.5 NA intron (NM_080685, intron 10 of 47) L1ME4b|LINE|L1 126184 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 421-3 chr8 65446091 65446420 + 2.5 NA Intergenic MIR|SINE|MIR 116411 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 297.667-10 chrUn_KI270336v1 456 695 + 2.5 NA NA SAR|Satellite|Satellite NA NA 341.167-4 chr3 20488980 20489227 + 2.5 NA Intergenic Intergenic 146635 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 425.834-2 chr5 42701808 42702113 + 2.5 NA intron (NM_001242403, intron 6 of 9) L1MA8|LINE|L1 -54858 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 387.833-2 chr16 13504129 13504486 + 2.5 NA Intergenic Intergenic -415850 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 682.334 chr5 99197678 99198015 + 2.5 NA Intergenic SATR1|Satellite|Satellite -268132 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 361.167-4 chr18 9963513 9963751 + 2.5 NA Intergenic Intergenic 49616 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 390.5-3 chr14 30105404 30105622 + 2.5 NA Intergenic Charlie13a|DNA|hAT-Charlie -177666 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 534.833 chr7 25048833 25049396 + 2.5 NA Intergenic AluSz6|SINE|Alu -68936 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 517-2 chr9 15579242 15579555 + 2.5 NA intron (NM_001355547, intron 3 of 24) intron (NM_001355547, intron 3 of 24) 15420 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 416 chr11 110757104 110757331 + 2.5 NA Intergenic Intergenic -44028 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 519.667 chr2 168607072 168607481 + 2.33333 NA intron (NM_001256126, intron 3 of 10) intron (NM_001256126, intron 3 of 10) 24333 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 489.667 chr1 172546084 172546303 + 2.33333 NA intron (NM_014283, intron 1 of 23) intron (NM_014283, intron 1 of 23) 13043 NM_014283 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 501.333 chr2 102555586 102556048 + 2.33333 NA Intergenic Intergenic -63736 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 379 chr14 49479597 49479823 + 2.33333 NA Intergenic Intergenic 106670 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 200-45 chr3 23339444 23339548 + 2.33333 NA intron (NM_001370225, intron 3 of 5) L1MC4a|LINE|L1 136169 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 354.5-4 chr4 75010296 75010582 + 2.33333 NA intron (NM_015393, intron 1 of 3) L1MB3|LINE|L1 -40077 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 478.333 chr5 90206225 90206527 + 2.33333 NA intron (NR_120601, intron 3 of 5) L1MB3|LINE|L1 83695 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 461.834 chr4 77560338 77560829 + 2.33333 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 48830 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 641.667 chr7 33274179 33274624 + 2.33333 NA intron (NM_198428, intron 9 of 22) intron (NM_198428, intron 9 of 22) 144837 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 880 chr10 63439204 63440026 + 2.33333 NA intron (NM_001322258, intron 1 of 24) intron (NM_001322258, intron 1 of 24) 9040 NR_134312 105378330 Hs.602852 NR_134312 LOC105378330 - uncharacterized LOC105378330 ncRNA 390.5-2 chr1 110855272 110855609 + 2.33333 NA Intergenic L1MC1|LINE|L1 -15759 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 547.666 chr2 223130924 223131250 + 2.33333 NA Intergenic Intergenic 79157 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 231.5-25 chr9 87106617 87106813 + 2.33333 NA Intergenic Intergenic -21490 NR_036691 494127 Hs.626316 NR_036691 LOC494127 - NFYC pseudogene pseudo 198.5-34 chr5 105590251 105590363 + 2.33333 NA Intergenic Intergenic 490833 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 277-16 chr6 75176962 75177144 + 2.33333 NA intron (NM_004370, intron 12 of 65) intron (NM_004370, intron 12 of 65) 29000 NM_004370 1303 Hs.101302 NM_004370 ENSG00000111799 COL12A1 BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2 collagen type XII alpha 1 chain protein-coding 631.333 chr14 36985707 36986404 + 2.33333 NA intron (NM_001171170, intron 1 of 10) L1MC4|LINE|L1 -33664 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 395.667-2 chr2 100607516 100607722 + 2.33333 NA intron (NR_146956, intron 2 of 2) (TTTATT)n|Simple_repeat|Simple_repeat 3880 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 516-2 chr9 19780914 19781261 + 2.33333 NA intron (NM_020344, intron 1 of 9) L1MEd|LINE|L1 5932 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 467.333 chr8 106848110 106848321 + 2.33333 NA Intergenic L1M5|LINE|L1 -77971 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 443.333 chr11 15020886 15021268 + 2.33333 NA Intergenic L1PA10|LINE|L1 -48726 NM_001741 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 314.667-5 chr2 68384864 68385110 + 2.33333 NA intron (NM_002664, intron 4 of 8) intron (NM_002664, intron 4 of 8) 19705 NM_002664 5341 Hs.468840 NM_002664 ENSG00000115956 PLEK P47 pleckstrin protein-coding 397.666-2 chr2 76794205 76794491 + 2.33333 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -191617 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 387.999 chr2 78783961 78784278 + 2.33333 NA Intergenic Intergenic 238588 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 350.666 chr18 72771690 72771878 + 2.33333 NA intron (NR_148694, intron 7 of 11) intron (NR_148694, intron 7 of 11) 81598 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 411.666 chr2 21086256 21086452 + 2.33333 NA Intergenic AluSz6|SINE|Alu -37632 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 446.666-2 chrX 41522914 41523156 + 2.33333 NA intron (NM_003688, intron 26 of 26) intron (NM_003688, intron 26 of 26) 75575 NM_022567 60506 Hs.302019 NM_022567 ENSG00000188937 NYX CLRP|CSNB1|CSNB1A|CSNB4|NBM1 nyctalopin protein-coding 296.333-5 chr14 60587951 60588209 + 2.33333 NA Intergenic L1MEd|LINE|L1 -51136 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 431.166 chr21 29692901 29693411 + 2.33333 NA intron (NM_001320618, intron 1 of 13) intron (NM_001320618, intron 1 of 13) -55019 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 371.167-3 chr15 70894314 70894693 + 2.33333 NA intron (NM_001199017, intron 2 of 15) intron (NM_001199017, intron 2 of 15) 2060 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 418.333 chr20 34122001 34122297 + 2.33333 NA Intergenic Intergenic -9906 NM_001316364 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 431.834-2 chr5 148214718 148215012 + 2.33333 NA intron (NM_001195290, intron 4 of 4) intron (NM_001195290, intron 4 of 4) 11823 NM_205841 404203 Hs.334274 NM_205841 ENSG00000178172 SPINK6 BUSI2|UNQ844 serine peptidase inhibitor, Kazal type 6 protein-coding 282.333-3 chr10 75548899 75549055 + 2.33333 NA intron (NM_001305581, intron 2 of 6) MER2|DNA|TcMar-Tigger -3481 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 327.333-2 chr10 34409815 34410016 + 2.33333 NA intron (NM_001184791, intron 4 of 20) intron (NM_001184791, intron 4 of 20) 405381 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 443.999 chr8 59956642 59956944 + 2.33333 NA Intergenic Intergenic 324607 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 279.667-5 chr14 66274370 66274586 + 2.33333 NA Intergenic Intergenic -211893 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 523.166 chr9 24252730 24253273 + 2.33333 NA Intergenic L1M4|LINE|L1 292675 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 312.333-7 chr17 60533909 60534304 + 2.33333 NA Intergenic MER21B|LTR|ERVL -7864 NM_006380 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 258 chr11 45592638 45592814 + 2.33333 NA Intergenic Intergenic 72896 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 330.333 chr13 30600159 30600431 + 2.33333 NA intron (NM_001370340, intron 1 of 4) intron (NM_001370340, intron 1 of 4) 17292 NM_001370340 3146 Hs.434102 NM_002128 ENSG00000189403 HMGB1 HMG-1|HMG1|HMG3|SBP-1 high mobility group box 1 protein-coding 436.667 chr5 39663181 39663554 + 2.33333 NA Intergenic Intergenic 142936 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 461 chr12 104341495 104341807 + 2.33333 NA intron (NM_001093771, intron 16 of 16) MER21C|LTR|ERVL 37912 NM_001008394 493861 Hs.659857 NM_001008394 ENSG00000255150 EID3 NS4EB|NSE4B|NSMCE4B EP300 interacting inhibitor of differentiation 3 protein-coding 681.333 chr6 50700886 50701390 + 2.33333 NA Intergenic MER90a|LTR|ERV1 -12406 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 392.333-3 chr2 137971601 137971790 + 2.33333 NA intron (NM_006895, intron 2 of 5) MIR|SINE|MIR 7222 NM_006895 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 456.999 chr14 61985172 61985452 + 2.33333 NA intron (NM_001367657, intron 3 of 6) intron (NM_001367657, intron 3 of 6) 57617 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 266.167-3 chr1 110765451 110765627 + 2.33333 NA Intergenic HAL1|LINE|L1 -90599 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 224.833-17 chr7 122996868 122996995 + 2.33333 NA Intergenic Intergenic -1231 NM_016945 50833 Hs.272395 NM_016945 ENSG00000128519 TAS2R16 BGLPT|T2R16 taste 2 receptor member 16 protein-coding 254.666-2 chr7 95173554 95173747 + 2.33333 NA intron (NM_017650, intron 5 of 15) L1ME1|LINE|L1 150882 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 538.333 chr10 129319714 129320213 + 2.33333 NA Intergenic Intergenic -147278 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 315-6 chr3 120445332 120445707 + 2.33333 NA intron (NM_007085, intron 2 of 10) intron (NM_007085, intron 2 of 10) 5473 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 348.833 chr21 30976013 30976541 + 2.33333 NA Intergenic Intergenic 62199 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 398.499 chr14 54455946 54456277 + 2.33333 NA Intergenic AluJr|SINE|Alu -14737 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 483.5 chr13 58288121 58288632 + 2.33333 NA Intergenic Intergenic -55259 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 334.667-4 chr18 3393858 3394076 + 2.33333 NA Intergenic L1MA9|LINE|L1 -17960 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 289.833-8 chr7 56204001 56204299 + 2.33333 NA Intergenic L2a|LINE|L2 -87733 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 253.666-3 chr6 146690312 146690429 + 2.33333 NA intron (NM_024694, intron 10 of 35) (TTTAT)n|Simple_repeat|Simple_repeat 91398 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 412.833 chr2 183764533 183764907 + 2.33333 NA Intergenic Intergenic -614255 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 269-8 chr20 15791813 15792010 + 2.33333 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 131403 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 498.334 chr11 100168989 100169373 + 2.33333 NA intron (NM_001243270, intron 12 of 23) Tigger1|DNA|TcMar-Tigger -518107 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 291.167-9 chr6 120442525 120442786 + 2.33333 NA Intergenic L1MDa|LINE|L1 427476 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 189.333-55 chr8 90929549 90929723 + 2.33333 NA intron (NM_022351, intron 8 of 12) intron (NM_022351, intron 8 of 12) 55441 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 214.333-9 chr10 76388158 76388290 + 2.33333 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -499820 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 483.667 chr10 50917055 50917545 + 2.33333 NA Intergenic Intergenic -31625 NM_001198818 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 381.667-3 chr14 42556492 42557238 + 2.33333 NA Intergenic Intergenic 950009 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 332.333-3 chr6 112540717 112540875 + 2.33333 NA Intergenic Intergenic 193466 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 253-18 chr4 144458304 144458476 + 2.33333 NA Intergenic Charlie18a|DNA|hAT-Charlie 187629 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 498.166 chr14 56898903 56899205 + 2.33333 NA intron (NR_029385, intron 3 of 3) intron (NR_029385, intron 3 of 3) 85896 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 272.5-21 chr8 107056208 107056442 + 2.33333 NA Intergenic Intergenic 280190 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 279.666-2 chr11 70513390 70513594 + 2.33333 NA intron (NM_133266, intron 2 of 10) L1MEf|LINE|L1 114963 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 298.833-5 chr20 31785812 31786077 + 2.33333 NA intron (NM_012112, intron 12 of 17) MER113|DNA|hAT-Charlie -33431 NM_033118 85366 Hs.86092 NM_033118 ENSG00000101306 MYLK2 KMLC|MLCK|MLCK2|skMLCK myosin light chain kinase 2 protein-coding 374.999-2 chrX 131216932 131217231 + 2.33333 NA Intergenic MARNA|DNA|TcMar-Mariner 71980 NM_001170963 3547 Hs.22111 NM_001555 ENSG00000147255 IGSF1 CHTE|IGCD1|IGDC1|INHBP|PGSF2|p120 immunoglobulin superfamily member 1 protein-coding 542.333 chr5 89263709 89264125 + 2.33333 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -359812 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 386.5 chr5 52791794 52792094 + 2.33333 NA intron (NM_181501, intron 1 of 28) MIR|SINE|MIR 4028 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 281-10 chr2 14842956 14843192 + 2.33333 NA Intergenic L1M3f|LINE|L1 210357 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 414.5-3 chrX 25290048 25290436 + 2.33333 NA Intergenic Intergenic -274277 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 280.667-18 chr4 106981848 106982108 + 2.33333 NA intron (NM_014421, intron 1 of 3) L2a|LINE|L2 54335 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 276.5-14 chr6 110125988 110126139 + 2.33333 NA intron (NM_001024935, intron 3 of 9) intron (NM_001024935, intron 3 of 9) 53607 NM_003931 8936 Hs.75850 NM_003931 ENSG00000112290 WASF1 SCAR1|WAVE|WAVE1 WASP family member 1 protein-coding 337.833-2 chr6 162119225 162119426 + 2.33333 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -607807 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 477.166 chr8 135613467 135613981 + 2.33333 NA intron (NM_006558, intron 7 of 8) intron (NM_006558, intron 7 of 8) 156268 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 419.667 chr2 193793404 193793667 + 2.33333 NA Intergenic L1MB8|LINE|L1 -550734 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 410.667 chr7 35417156 35417449 + 2.33333 NA Intergenic Intergenic 103447 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 369-3 chr8 84501446 84501654 + 2.33333 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 86066 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 468.5 chr8 119012469 119013048 + 2.33333 NA intron (NM_001324095, intron 1 of 7) L1MC1|LINE|L1 -54489 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 336.167-3 chr16 85064350 85064633 + 2.33333 NA intron (NM_001286565, intron 1 of 12) L1ME4c|LINE|L1 1279 NM_001286565 9764 Hs.301658 NM_014732 ENSG00000135709 KIAA0513 - KIAA0513 protein-coding 509.167 chr9 123844189 123844655 + 2.33333 NA intron (NM_001352968, intron 2 of 18) L1MB4|LINE|L1 85704 NM_024820 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 483.666-2 chrX 74859930 74860157 + 2.33333 NA intron (NM_001008537, intron 1 of 3) L1MA3|LINE|L1 65409 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 267.334-2 chr14 52833047 52833267 + 2.33333 NA Intergenic L1MC4|LINE|L1 -41550 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 391.834 chr7 79593670 79593922 + 2.33333 NA Intergenic L1MEi|LINE|L1 139836 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 595.334 chr6 53540240 53540611 + 2.33333 NA intron (NM_001498, intron 1 of 15) L1MB1|LINE|L1 4676 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 229.333-33 chr8 88973342 88973454 + 2.33333 NA Intergenic Intergenic -645915 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 697.667 chr3 102450677 102451139 + 2.33333 NA intron (NM_175056, intron 2 of 10) intron (NM_175056, intron 2 of 10) 15893 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 517.999 chr2 100944500 100945004 + 2.33333 NA intron (NM_002518, intron 5 of 20) intron (NM_002518, intron 5 of 20) 32409 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 460.667 chr9 28697057 28697481 + 2.33333 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 22036 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 521.667 chr7 3830661 3831240 + 2.33333 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -298735 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 374.666 chr1 173078797 173079033 + 2.33333 NA Intergenic MER4D0|LTR|ERV1 -27952 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 435.166 chr2 60541285 60541491 + 2.33333 NA intron (NM_138559, intron 2 of 4) intron (NM_138559, intron 2 of 4) 12110 NM_001363864 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 378.999 chr2 132901057 132901350 + 2.33333 NA intron (NM_207481, intron 8 of 17) intron (NM_207481, intron 8 of 17) -14354 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 358.833-3 chr8 137668184 137668714 + 2.33333 NA Intergenic Intergenic -254861 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 413.333-3 chr5 93068179 93068494 + 2.33333 NA Intergenic Intergenic 503007 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 594.999 chr3 88081311 88081651 + 2.33333 NA intron (NM_001366093, intron 1 of 7) L1MC4a|LINE|L1 22226 NM_001350134 55279 Hs.591650 NM_018293 ENSG00000175105 ZNF654 - zinc finger protein 654 protein-coding 417.5-2 chr9 33273623 33274118 + 2.33333 NA intron (NM_001195536, intron 5 of 6) intron (NM_001195536, intron 5 of 6) 8821 NM_016410 51510 Hs.635313 NM_016410 ENSG00000086065 CHMP5 C9orf83|CGI-34|HSPC177|PNAS-2|SNF7DC2|Vps60 charged multivesicular body protein 5 protein-coding 678.666 chr10 14524682 14525003 + 2.33333 NA intron (NM_001282699, intron 2 of 3) intron (NM_001282699, intron 2 of 3) 7872 NM_001320741 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 363.667-2 chr14 41565199 41565433 + 2.33333 NA Intergenic Intergenic -41540 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 254-18 chr3 166863062 166863242 + 2.33333 NA Intergenic Intergenic -35531 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 347.167-3 chr15 76217075 76217336 + 2.33333 NA intron (NM_000126, intron 11 of 11) intron (NM_000126, intron 11 of 11) -35719 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 697.667-2 chr8 103063413 103064004 + 2.33333 NA intron (NM_001695, intron 10 of 12) intron (NM_001695, intron 10 of 12) 42625 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 522.666 chr7 120596418 120596801 + 2.33333 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 261535 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 415.666 chr17 69192443 69192792 + 2.33333 NA exon (NM_080282, exon 17 of 40) exon (NM_080282, exon 17 of 40) 42395 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 491.166 chr7 84323969 84324298 + 2.33333 NA Intergenic Intergenic -129344 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 578.501 chr5 171990276 171990760 + 2.33333 NA intron (NM_012300, intron 1 of 12) L1ME4b|LINE|L1 16355 NM_033644 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 320.667-8 chr22 28328279 28328542 + 2.33333 NA intron (NM_001145418, intron 2 of 22) AluJr4|SINE|Alu -131459 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 349.333-2 chr2 142143506 142143659 + 2.33333 NA Intergenic L1MEi|LINE|L1 -11881 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 352 chr2 111217947 111218352 + 2.33333 NA intron (NR_015395, intron 5 of 6) L1ME1|LINE|L1 97235 NM_001204108 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 630.666 chr9 20564077 20564544 + 2.33333 NA intron (NM_001286691, intron 2 of 10) intron (NM_001286691, intron 2 of 10) 57628 NM_001286691 4300 Hs.317248 NM_004529 ENSG00000171843 MLLT3 AF9|YEATS3 MLLT3 super elongation complex subunit protein-coding 650.5 chr4 37139451 37140352 + 2.33333 NA Intergenic MIR|SINE|MIR 102090 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 379-4 chrX 74092067 74092365 + 2.16667 NA intron (NR_028379, intron 5 of 6) L1M2|LINE|L1 126245 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 552.5 chr4 31854887 31855212 + 2.16667 NA Intergenic L1MB5|LINE|L1 -142330 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 343 chr17 61140647 61140967 + 2.16667 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 226897 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 497.501 chr10 29786662 29786959 + 2.16667 NA Intergenic L1MDa|LINE|L1 -49874 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 473.334 chr18 40097194 40097438 + 2.16667 NA intron (NR_110791, intron 3 of 3) intron (NR_110791, intron 3 of 3) 31030 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 257.834-3 chr6 69337319 69337551 + 2.16667 NA intron (NM_001704, intron 24 of 31) MER5B|DNA|hAT-Charlie 459031 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 712.334 chr3 88435783 88436324 + 2.16667 NA intron (NM_001368168, intron 2 of 2) GA-rich|Low_complexity|Low_complexity 97597 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 359-5 chrX 85043199 85043442 + 2.16667 NA intron (NM_198450, intron 1 of 8) intron (NM_198450, intron 1 of 8) 39443 NM_198450 139322 Hs.512181 NM_198450 ENSG00000155008 APOOL CXorf33|FAM121A|MICOS27|Mic27|UNQ8193 apolipoprotein O like protein-coding 183.5-10 chr12 22755984 22756207 + 2.16667 NA Intergenic Intergenic 130924 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 447.5-2 chr7 31955136 31955472 + 2.16667 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 115103 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 370.333-3 chr5 34946520 34946838 + 2.16667 NA intron (NM_001012339, intron 9 of 11) intron (NM_001012339, intron 9 of 11) 17086 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 261.833-16 chr7 40595985 40596206 + 2.16667 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 383844 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 519.334 chr14 102612926 102613426 + 2.16667 NA intron (NM_015156, intron 2 of 11) AluSx|SINE|Alu 20527 NM_015156 23186 Hs.510521 NM_015156 ENSG00000089902 RCOR1 COREST|RCOR REST corepressor 1 protein-coding 446.167 chr12 63297197 63297925 + 2.16667 NA Intergenic L1MC5|LINE|L1 -144751 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 232.5-22 chr3 108134457 108134591 + 2.16667 NA intron (NR_110028, intron 1 of 2) intron (NR_110028, intron 1 of 2) 8703 NR_110028 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 350.333-5 chr20 24424940 24425234 + 2.16667 NA Intergenic MIRc|SINE|MIR -44112 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 250.833-7 chr2 79295988 79296387 + 2.16667 NA Intergenic Intergenic -136434 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 387.834 chr1 43486716 43486958 + 2.16667 NA Intergenic L1MB7|LINE|L1 -32848 NM_001190880 81888 Hs.709864 NM_031207 ENSG00000178922 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 331.001 chr10 66019951 66020238 + 2.16667 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 448669 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 186-15 chr14 80962967 80963132 + 2.16667 NA intron (NM_001142626, intron 1 of 8) MamRep1151|LTR?|LTR? 7428 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 776.667 chr4 49709431 49710206 + 2.16667 NA Intergenic SAR|Satellite|Satellite 723176 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 334.5-3 chr10 57716524 57716768 + 2.16667 NA Intergenic Intergenic -412087 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 265.5-12 chr6 114740250 114740574 + 2.16667 NA Intergenic L1ME3A|LINE|L1 -677535 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 372.667-3 chr14 56885201 56885414 + 2.16667 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 72149 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 422.667-3 chr22 26707161 26707455 + 2.16667 NA intron (NR_110543, intron 1 of 5) L1ME2z|LINE|L1 34465 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 334.334-3 chr4 100059131 100059290 + 2.16667 NA Intergenic Intergenic 108716 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 496.834 chr7 18693473 18693832 + 2.16667 NA intron (NM_058176, intron 11 of 22) intron (NM_058176, intron 11 of 22) 184382 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 545.834 chr2 107101569 107101936 + 2.16667 NA Intergenic Intergenic -214643 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 380.834 chr14 54232367 54232757 + 2.16667 NA Intergenic Intergenic -164306 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 269.5-5 chr14 62026751 62026927 + 2.16667 NA intron (NM_001367661, intron 4 of 8) intron (NM_001367661, intron 4 of 8) -90518 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 366-3 chr3 97691256 97691553 + 2.16667 NA intron (NM_001080448, intron 14 of 17) L1MB8|LINE|L1 -73117 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 660.668 chr15 57095041 57095548 + 2.16667 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -124136 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 325 chr5 92856018 92856321 + 2.16667 NA Intergenic Intergenic 715174 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 412.5-4 chr4 106662500 106663130 + 2.16667 NA Intergenic Intergenic 229191 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 204.167-24 chr5 5944856 5944972 + 2.16667 NA Intergenic L1MB8|LINE|L1 392378 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 579.334 chr6 152385436 152385981 + 2.16667 NA exon (NM_033071, exon 55 of 146) exon (NM_033071, exon 55 of 146) 5178 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 586 chr2 161465494 161466060 + 2.16667 NA Intergenic L1MEf|LINE|L1 42125 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 394.667 chr11 76362465 76363216 + 2.16667 NA intron (NM_004705, intron 2 of 4) intron (NM_004705, intron 2 of 4) 18125 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 454 chr4 71869160 71869496 + 2.16667 NA Intergenic L1MD2|LINE|L1 -63808 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 566.999 chr8 83041491 83042195 + 2.16667 NA Intergenic Intergenic 129739 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 243.5-15 chr2 122936361 122936561 + 2.16667 NA Intergenic Intergenic 137020 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 345.667 chr1 114489802 114490059 + 2.16667 NA intron (NM_015906, intron 1 of 19) L1MB8|LINE|L1 21273 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 328 chr10 109582337 109582614 + 2.16667 NA Intergenic Tigger2a|DNA|TcMar-Tigger 340771 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 414-3 chr18 6152748 6153000 + 2.16667 NA intron (NM_001365769, intron 13 of 16) L1MA9|LINE|L1 -103870 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 294.834 chr12 32569751 32569953 + 2.16667 NA intron (NM_001370297, intron 2 of 14) intron (NM_001370297, intron 2 of 14) 35559 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 413.167 chr6 53003757 53004123 + 2.16667 NA 3' UTR (NM_016513, exon 15 of 15) 3' UTR (NM_016513, exon 15 of 15) 8320 NR_001445 125050 NR_001445 ENSG00000202198 RN7SK 7SK RNA component of 7SK nuclear ribonucleoprotein snRNA 278.167-3 chr11 17988861 17989056 + 2.16667 NA intron (NR_104040, intron 7 of 11) intron (NR_104040, intron 7 of 11) 24089 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 409.333 chr12 6263198 6263525 + 2.16667 NA Intergenic MLT2D|LTR|ERVL -47075 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 455 chr18 11586656 11587502 + 2.16667 NA Intergenic Intergenic -22479 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 371.167-2 chr11 21855094 21855520 + 2.16667 NA Intergenic L1MC4|LINE|L1 -337778 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 305.167-9 chr5 52261290 52261444 + 2.16667 NA Intergenic Intergenic 253336 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 390-9 chr7 80444980 80445329 + 2.16667 NA Intergenic Tigger15a|DNA|TcMar-Tigger 66910 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 453.833 chr3 109637835 109638107 + 2.16667 NA Intergenic L1PA15|LINE|L1 35143 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 328.5-13 chrX 38781489 38781696 + 2.16667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -19840 NM_001098791 58526 Hs.522605 NM_021242 ENSG00000165175 MID1IP1 G12-like|MIG12|S14R|STRAIT11499|THRSPL MID1 interacting protein 1 protein-coding 399.5-2 chr5 113770425 113770659 + 2.16667 NA Intergenic Intergenic 256848 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 407.167-3 chr10 66894650 66894913 + 2.16667 NA intron (NR_111911, intron 6 of 6) intron (NR_111911, intron 6 of 6) -31255 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 224.5-12 chr19 10209799 10209989 + 2.16667 NA Intergenic AluJb|SINE|Alu -14941 NM_001318731 1786 Hs.202672 NM_001379 ENSG00000130816 DNMT1 ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT|m.HsaI DNA methyltransferase 1 protein-coding 467.001 chr4 78959452 78959720 + 2.16667 NA Intergenic MER20|DNA|hAT-Charlie -12162 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 247.167-22 chr8 102009153 102009680 + 2.16667 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) 24984 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 310.5-8 chr2 33834809 33835180 + 2.16667 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -106777 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 312.167-5 chr3 185022981 185023220 + 2.16667 NA intron (NM_001009921, intron 44 of 46) L1ME1|LINE|L1 129960 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 402.833-3 chr2 234461369 234461704 + 2.16667 NA Intergenic Intergenic -6941 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 394.334-2 chr4 163028495 163028721 + 2.16667 NA Intergenic Tigger13a|DNA|TcMar-Tigger 65020 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 550.667 chr2 238391770 238392226 + 2.16667 NA intron (NM_001139490, intron 13 of 14) intron (NM_001139490, intron 13 of 14) -34929 NM_001040445 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 412.5-6 chr6 124251836 124252080 + 2.16667 NA intron (NM_001300737, intron 2 of 7) L1MA5A|LINE|L1 -31047 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 427.5 chr14 51381266 51381928 + 2.16667 NA Intergenic AluY|SINE|Alu 15538 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 434.834-2 chr5 37164908 37165290 + 2.16667 NA intron (NM_023073, intron 36 of 51) AluJr|SINE|Alu -83947 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 631 chr7 31536017 31536578 + 2.16667 NA intron (NM_001257968, intron 1 of 14) L1MEf|LINE|L1 6835 NM_001257968 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 467.834 chr3 39576711 39577064 + 2.16667 NA Intergenic Intergenic 74821 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 336.667-7 chr8 101573880 101574106 + 2.16667 NA intron (NM_024915, intron 6 of 15) intron (NM_024915, intron 6 of 15) 81554 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 337.167 chr15 41187445 41187668 + 2.16667 NA intron (NM_152596, intron 9 of 9) intron (NM_152596, intron 9 of 9) 43201 NM_152596 161829 Hs.307999 NM_152596 ENSG00000178997 EXD1 EXDL1 exonuclease 3'-5' domain containing 1 protein-coding 551.667-2 chr5 150702004 150702502 + 2.16667 NA Intergenic L1ME1|LINE|L1 -1191 NM_018047 55696 Hs.713564 NM_018047 ENSG00000086589 RBM22 Cwc2|ZC3H16|fSAP47 RNA binding motif protein 22 protein-coding 184.667-44 chr6 95481394 95481559 + 2.16667 NA Intergenic L1PA16|LINE|L1 95975 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 498.333 chr10 35472650 35473078 + 2.16667 NA intron (NM_001282853, intron 2 of 10) intron (NM_001282853, intron 2 of 10) -132477 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 268.834-2 chr12 111990212 111990473 + 2.16667 NA intron (NM_001294314, intron 4 of 12) MIRb|SINE|MIR 22823 NM_001193531 89894 Hs.506815 NM_138341 ENSG00000198270 TMEM116 - transmembrane protein 116 protein-coding 177.834 chr1 152459474 152459564 + 2.16667 NA Intergenic L2a|LINE|L2 -45256 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 319.667-17 chrX 150576157 150576338 + 2.16667 NA intron (NM_000252, intron 1 of 14) L1M5|LINE|L1 7650 NM_000252 4534 Hs.655056 NM_000252 ENSG00000171100 MTM1 CNM|MTMX|XLMTM myotubularin 1 protein-coding 141-15 chr11 40701043 40701195 + 2.16667 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -407989 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 422.834 chr14 69410004 69410351 + 2.16667 NA intron (NM_001330185, intron 1 of 5) intron (NM_001330185, intron 1 of 5) 11485 NM_001330185 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 479.5 chr5 76575596 76576215 + 2.16667 NA intron (NM_006633, intron 5 of 35) intron (NM_006633, intron 5 of 35) 28496 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 376.667-2 chr11 46968139 46968436 + 2.16667 NA intron (NM_001278222, intron 1 of 7) intron (NM_001278222, intron 1 of 7) 31526 NR_103472 79096 Hs.368296 NM_024113 ENSG00000149179 C11orf49 - chromosome 11 open reading frame 49 protein-coding 277.166-3 chr7 81356030 81356241 + 2.16667 NA Intergenic Intergenic 205684 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 328.5-3 chr2 235185396 235185632 + 2.16667 NA Intergenic MER57A1|LTR|ERV1 157779 NM_001371306 465-2 chr3 69682994 69683440 + 2.16667 NA Intergenic MER124|DNA?|DNA? -56247 NM_001354605 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 417.834 chr4 83569060 83569367 + 2.16667 NA intron (NM_001256421, intron 3 of 12) Arthur1A|DNA|hAT-Tip100 33105 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 398.667 chr10 24621696 24622019 + 2.16667 NA intron (NM_001367447, intron 7 of 24) intron (NM_001367447, intron 7 of 24) 986 NR_160024 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 422.501 chr8 72974260 72974586 + 2.16667 NA Intergenic AluSx|SINE|Alu -34441 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 282.167-6 chr15 33143594 33143915 + 2.16667 NA intron (NM_001277313, intron 4 of 20) intron (NM_001277313, intron 4 of 20) 50960 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 295 chr17 71345848 71346065 + 2.16667 NA Intergenic MSTD-int|LTR|ERVL-MaLR -143777 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 431.334 chr9 113964008 113964380 + 2.16667 NA intron (NM_001318042, intron 1 of 14) intron (NM_001318042, intron 1 of 14) 87885 NM_001318042 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 453.5 chr12 56589469 56589776 + 2.16667 NA 3' UTR (NM_002898, exon 14 of 14) 3' UTR (NM_002898, exon 14 of 14) 40704 NM_001300905 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding 374-7 chr7 29766034 29766227 + 2.16667 NA Intergenic MIR|SINE|MIR -40424 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 236-8 chr18 1510352 1510472 + 2.16667 NA Intergenic L1M2|LINE|L1 -150783 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 480.333 chr21 27734302 27734730 + 2.16667 NA intron (NR_024357, intron 1 of 3) intron (NR_024357, intron 1 of 3) 12137 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 399-4 chr5 61298364 61298685 + 2.16667 NA Intergenic MIR|SINE|MIR -33595 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 341.667-3 chr17 42592201 42592434 + 2.16667 NA intron (NM_178126, intron 1 of 8) MIRb|SINE|MIR -14486 NM_016556 29893 Hs.383019 NM_013290 ENSG00000131470 PSMC3IP GT198|HOP2|HUMGT198A|ODG3|TBPIP PSMC3 interacting protein protein-coding 302.167-8 chr4 72642343 72642605 + 2.16667 NA Intergenic MER53|DNA|hAT -73253 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 368.501 chr12 25157510 25157745 + 2.16667 NA intron (NM_001352067, intron 1 of 10) Charlie1a|DNA|hAT-Charlie 37533 NM_001352067 55259 Hs.407771 NM_018272 ENSG00000118307 CASC1 LAS1|PPP1R54 cancer susceptibility 1 protein-coding 281.667-9 chr15 59798349 59798615 + 2.16667 NA Intergenic AluJb|SINE|Alu -109162 NM_001368057 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 361.334-4 chr5 44845757 44845995 + 2.16667 NA Intergenic Intergenic 36929 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 378.834-2 chr21 31793985 31794286 + 2.16667 NA Intergenic ERVL-E-int|LTR|ERVL -62017 NM_001145444 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 299.667-10 chr3 38874522 38874896 + 2.16667 NA intron (NM_014139, intron 19 of 25) L1ME3Cz|LINE|L1 75852 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 384.667 chr16 60998240 60998609 + 2.16667 NA Intergenic L1MC|LINE|L1 57342 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 354.167-3 chr14 41532956 41533280 + 2.16667 NA Intergenic L1MB3|LINE|L1 -73738 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 422.667-4 chr6 141867952 141868559 + 2.16667 NA Intergenic Intergenic 220544 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 470.167 chr2 54752324 54752764 + 2.16667 NA intron (NM_001039753, intron 1 of 40) L1ME3|LINE|L1 27532 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 526.501 chr3 189166474 189166920 + 2.16667 NA Intergenic Intergenic -5274 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 280.167-13 chr8 59638204 59638350 + 2.16667 NA Intergenic Intergenic 519067 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 518.834 chr6 130647872 130648236 + 2.16667 NA Intergenic Intergenic -179351 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 571 chr5 45991402 45991747 + 2.16667 NA Intergenic ALR/Alpha|Satellite|centr -295194 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 346.334 chr8 119341248 119341514 + 2.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 16210 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 430.333-2 chr6 128789170 128789600 + 2.16667 NA Intergenic L1ME2|LINE|L1 -93753 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 425.334 chr10 23497626 23497942 + 2.16667 NA Intergenic AluJr|SINE|Alu 58515 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 475-2 chr3 113550332 113550759 + 2.16667 NA intron (NM_001322297, intron 1 of 24) Charlie24|DNA|hAT-Charlie 17990 NR_136281 54847 Hs.591291 NM_017699 ENSG00000072858 SIDT1 SID-1|SID1 SID1 transmembrane family member 1 protein-coding 401.166 chr15 92938856 92939300 + 2.16667 NA intron (NM_001042572, intron 6 of 12) L1ME4b|LINE|L1 34679 NR_036136 100422995 NR_036136 ENSG00000284324 MIR3175 mir-3175 microRNA 3175 ncRNA 387.834-4 chr14 65339274 65339611 + 2.16667 NA Intergenic Intergenic -4259 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 462.001 chr17 61696002 61696425 + 2.16667 NA intron (NM_032043, intron 17 of 19) L1MB7|LINE|L1 -104994 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 485.666 chr17 55531334 55531798 + 2.16667 NA Intergenic Intergenic -109731 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 409.667 chr5 86262284 86262555 + 2.16667 NA Intergenic Tigger4|DNA|TcMar-Tigger -20025 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 335.834 chr1 187305880 187306178 + 2.16667 NA intron (NR_126347, intron 2 of 3) L1PA13|LINE|L1 -137599 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 329-4 chr15 68104774 68105098 + 2.16667 NA intron (NM_016166, intron 2 of 13) intron (NM_016166, intron 2 of 13) 50360 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 492.167 chr14 41531441 41531856 + 2.16667 NA Intergenic L1MB3|LINE|L1 -75208 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 403-2 chr14 47885682 47886239 + 2.16667 NA Intergenic L1MEg|LINE|L1 -90946 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 548.667 chr11 12580437 12580911 + 2.16667 NA Intergenic L1MB8|LINE|L1 -93747 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 396.334-2 chr4 39330931 39331176 + 2.16667 NA intron (NM_001204747, intron 4 of 24) intron (NM_001204747, intron 4 of 24) 35309 NM_001363496 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 419.333-3 chr2 43671455 43672167 + 2.16667 NA intron (NM_172069, intron 2 of 29) L1M5|LINE|L1 4618 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 209.834-5 chr2 147803414 147803567 + 2.16667 NA Intergenic Intergenic -41027 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 397.334-3 chr3 36006499 36007000 + 2.16667 NA Intergenic L1MA6|LINE|L1 262273 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 621.667 chr12 64911011 64911688 + 2.16667 NA intron (NR_033988, intron 2 of 2) intron (NR_033988, intron 2 of 2) 27575 NR_033988 400046 Hs.591032 NR_033988 ENSG00000255693 LINC02389 - long intergenic non-protein coding RNA 2389 ncRNA 399.999 chr8 12851586 12851924 + 2.16667 NA Intergenic Intergenic -40277 NR_015383 340357 Hs.434302 NR_015383 ENSG00000254813 LOC340357 - uncharacterized LOC340357 ncRNA 257-10 chr3 178631229 178631405 + 2.16667 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 72467 NM_005832 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 398 chr11 102652009 102652214 + 2.16667 NA Intergenic L1PA4|LINE|L1 -26779 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 413.333 chr16 53135875 53136335 + 2.16667 NA intron (NM_001352127, intron 1 of 38) intron (NM_001352127, intron 1 of 38) 5093 NM_001352127 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 491.667 chr2 18147996 18148452 + 2.16667 NA Intergenic Intergenic 269557 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 503.001 chr5 13504615 13504941 + 2.16667 NA Intergenic Intergenic 439702 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 471.166 chr10 108498675 108499140 + 2.16667 NA Intergenic Intergenic -429614 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 344.833 chr3 4936004 4936291 + 2.16667 NA intron (NR_125916, intron 1 of 2) intron (NR_125916, intron 1 of 2) -29646 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 620.5 chr1 218934749 218935292 + 2.16667 NA intron (NR_031644, intron 6 of 6) L1PBa|LINE|L1 -16509 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 342.166 chr8 136578823 136579122 + 2.16667 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 48174 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 517.334 chr6 38452023 38452275 + 2.16667 NA intron (NM_001172418, intron 5 of 10) MIRb|SINE|MIR -29447 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 303.667-6 chr3 31907014 31907243 + 2.16667 NA intron (NM_001174060, intron 1 of 10) intron (NM_001174060, intron 1 of 10) -74622 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 253.167-3 chr2 47839400 47839554 + 2.16667 NA exon (NM_001190274, exon 3 of 23) exon (NM_001190274, exon 3 of 23) 49242 NM_025133 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 420.334 chr10 118338063 118338557 + 2.16667 NA intron (NM_001134672, intron 1 of 7) intron (NM_001134672, intron 1 of 7) 4014 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 408 chr2 102406095 102406418 + 2.16667 NA Intergenic L1M2|LINE|L1 -12534 NM_003853 8807 Hs.158315 NM_003853 ENSG00000115607 IL18RAP ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB interleukin 18 receptor accessory protein protein-coding 453.334 chr15 23813821 23814167 + 2.16667 NA Intergenic Intergenic -126689 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 368.001 chr15 68107609 68107851 + 2.16667 NA intron (NM_016166, intron 2 of 13) intron (NM_016166, intron 2 of 13) 53154 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 336.167-4 chr2 96626324 96626755 + 2.16667 NA intron (NR_047654, intron 3 of 20) intron (NR_047654, intron 3 of 20) 11452 NR_047658 55683 Hs.516341 NM_017991 ENSG00000114982 KANSL3 KIAA1310|NSL3|Rcd1 KAT8 regulatory NSL complex subunit 3 protein-coding 420.667 chr17 57944390 57944766 + 2.16667 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) 10834 NM_001271875 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 454.501-2 chr2 170144290 170144613 + 2.16667 NA Intergenic Intergenic -33696 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 406.5-3 chr7 85978450 85978801 + 2.16667 NA Intergenic Intergenic 557503 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 525.5 chr7 27021358 27021929 + 2.16667 NA Intergenic Intergenic 74357 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 423.334 chr12 104856786 104857217 + 2.16667 NA intron (NM_032148, intron 9 of 11) L1MEc|LINE|L1 101289 NM_001352170 84102 Hs.577463 NM_032148 ENSG00000136052 SLC41A2 SLC41A1-L1 solute carrier family 41 member 2 protein-coding 447.834 chr11 12694940 12695305 + 2.16667 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 20701 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 575.667 chr8 125795080 125795753 + 2.16667 NA Intergenic Intergenic 155781 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 337.334-3 chr2 46577087 46577254 + 2.16667 NA intron (NM_012249, intron 4 of 4) intron (NM_012249, intron 4 of 4) 3068 NR_104182 100506142 Hs.658541 NR_104182 ENSG00000250116 LOC100506142 - uncharacterized LOC100506142 ncRNA 309.667 chr11 43159257 43159602 + 2.16667 NA Intergenic Intergenic 109940 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 382.667-3 chr4 32919028 32919471 + 2.16667 NA Intergenic Intergenic 568211 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 323-3 chr21 15943534 15943842 + 2.16667 NA Intergenic Intergenic -126800 NR_136541 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 392.667-3 chr6 144325981 144326184 + 2.16667 NA intron (NM_007124, intron 1 of 73) HAL1|LINE|L1 34345 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 323.667-6 chr2 190560369 190560695 + 2.16667 NA Intergenic Intergenic -25810 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 489.834 chr5 56272789 56273206 + 2.16667 NA Intergenic L1MC4|LINE|L1 -39667 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 353.834-3 chr21 26890406 26890700 + 2.16667 NA Intergenic AluJb|SINE|Alu -45144 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 380.5 chr1 57349272 57349718 + 2.16667 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) 73617 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 266.167-23 chr9 102320713 102320839 + 2.16667 NA Intergenic L1MC3|LINE|L1 -198861 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 301.334-2 chr2 128805017 128805209 + 2.16667 NA Intergenic L1MD2|LINE|L1 -59487 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 249.833-10 chr2 46260723 46260921 + 2.16667 NA Intergenic MIR3|SINE|MIR -36585 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 510.167-3 chr5 35605780 35606367 + 2.16667 NA Intergenic L1MEf|LINE|L1 -11790 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 389.667-2 chr6 121666440 121666784 + 2.16667 NA Intergenic Intergenic 230966 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 431.999 chr8 128551639 128552018 + 2.16667 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 12851 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 399-2 chr17 10458170 10458485 + 2.16667 NA intron (NM_017533, intron 15 of 39) intron (NM_017533, intron 15 of 39) 11232 NM_017533 4622 Hs.711141 NM_017533 ENSG00000264424 MYH4 MYH2B|MyHC-2B|MyHC-IIb myosin heavy chain 4 protein-coding 246.167-31 chr8 129130951 129131068 + 2.16667 NA Intergenic Intergenic 110231 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 463.501 chr14 73099684 73100103 + 2.16667 NA intron (NM_021239, intron 9 of 18) intron (NM_021239, intron 9 of 18) -36614 NM_000021 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 287 chr1 214655971 214656316 + 2.16667 NA intron (NM_016343, intron 17 of 19) intron (NM_016343, intron 17 of 19) 52948 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 267-10 chr5 127362112 127362323 + 2.16667 NA intron (NM_001308121, intron 4 of 13) L1ME1|LINE|L1 71421 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 336.667 chr10 25355190 25355389 + 2.16667 NA intron (NM_020752, intron 2 of 10) L1M3f|LINE|L1 -179013 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 298.166 chr2 75629309 75629559 + 2.16667 NA Intergenic Intergenic -17349 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 191.667-44 chr5 56854475 56854565 + 2.16667 NA intron (NM_005921, intron 1 of 19) intron (NM_005921, intron 1 of 19) 38971 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 328.834-2 chr5 39331749 39331926 + 2.16667 NA intron (NM_001737, intron 4 of 10) intron (NM_001737, intron 4 of 10) 32658 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 387.834-3 chr12 43755196 43755526 + 2.16667 NA intron (NM_031292, intron 1 of 8) intron (NM_031292, intron 1 of 8) 3429 NM_001098614 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 323 chr1 108803023 108803215 + 2.16667 NA intron (NM_007269, intron 17 of 18) L1MEd|LINE|L1 53975 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 270.334-11 chr8 23688713 23688886 + 2.16667 NA Intergenic Intergenic -5861 NM_006167 4824 Hs.55999 NM_006167 ENSG00000167034 NKX3-1 BAPX2|NKX3|NKX3.1|NKX3A NK3 homeobox 1 protein-coding 272-12 chr6 70963435 70963590 + 2.16667 NA Intergenic Intergenic -6452 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 462.334 chr21 30115064 30115437 + 2.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 51555 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 450.167-2 chr8 8834392 8834748 + 2.16667 NA intron (NM_004225, intron 1 of 2) Tigger3c|DNA|TcMar-Tigger 59060 NM_004225 9258 Hs.379414 NM_004225 ENSG00000147324 MFHAS1 LRRC65|MASL1|ROCO4 malignant fibrous histiocytoma amplified sequence 1 protein-coding 624.501 chr15 53483202 53483717 + 2.16667 NA Intergenic LTR50|LTR|ERVL 57393 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 432.5-2 chr7 53889265 53889716 + 2.16667 NA Intergenic Intergenic -77559 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 399 chr10 16336536 16336850 + 2.16667 NA Intergenic L1M3|LINE|L1 -100250 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 307.667-11 chr5 124999430 124999595 + 2.16667 NA Intergenic MER34A1|LTR|ERV1 -37319 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 546.166 chr1 66018326 66018793 + 2.16667 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) 25943 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 180.834-5 chr3 135006390 135006613 + 2.16667 NA intron (NM_004441, intron 3 of 15) L1MB4|LINE|L1 211241 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 422.834-2 chr5 107045859 107046087 + 2.16667 NA Intergenic L3|LINE|CR1 -34959 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 306.667-2 chr1 187792062 187792305 + 2.16667 NA Intergenic AluSc8|SINE|Alu 348555 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 187.334-9 chr8 132705779 132705871 + 2.16667 NA Intergenic Intergenic -30280 NR_135908 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 328.167-6 chr7 15067330 15067734 + 2.16667 NA Intergenic LTR37-int|LTR|ERV1 -92674 NM_001350722 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 215.667-44 chr5 159814388 159814523 + 2.16667 NA intron (NR_109891, intron 2 of 2) MLT1A0-int|LTR|ERVL-MaLR 56929 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 274.334-7 chr4 47546976 47547212 + 2.16667 NA intron (NM_020453, intron 10 of 22) intron (NM_020453, intron 10 of 22) 61819 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 295.834-6 chr9 121867066 121867310 + 2.16667 NA intron (NM_001139442, intron 7 of 8) MER102a|DNA|hAT-Charlie 124403 NM_138709 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 232-26 chr5 23792404 23792526 + 2.16667 NA Intergenic L1MCa|LINE|L1 -158883 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 316.167-3 chr3 136359809 136360124 + 2.16667 NA intron (NM_005862, intron 26 of 33) intron (NM_005862, intron 26 of 33) 109626 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 479.167 chr4 97239947 97240219 + 2.16667 NA Intergenic Intergenic -126843 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 395-2 chr3 112248846 112249214 + 2.16667 NA intron (NM_001320531, intron 9 of 27).2 L1PREC2|LINE|L1 45186 NM_183061 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 428.667 chr12 8067332 8067614 + 2.16667 NA Intergenic Intergenic -1114 NM_004054 719 Hs.504656 NM_004054 ENSG00000171860 C3AR1 AZ3B|C3AR|HNFAG09 complement C3a receptor 1 protein-coding 374.333 chr11 73691147 73691492 + 2.16667 NA intron (NM_001243718, intron 3 of 4) intron (NM_001243718, intron 3 of 4) 42406 NM_001130036 58473 Hs.445489 NM_021200 ENSG00000021300 PLEKHB1 KPL1|PHR1|PHRET1 pleckstrin homology domain containing B1 protein-coding 493.334 chr21 30266402 30266876 + 2.16667 NA Intergenic Intergenic 16311 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 415.167-4 chr5 130179493 130179864 + 2.16667 NA intron (NM_175856, intron 2 of 2) L1M7|LINE|L1 275213 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 386 chr1 118938679 118938951 + 2.16667 NA intron (NM_152380, intron 1 of 7) L1PA16|LINE|L1 49528 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 395.834 chr10 33331357 33331878 + 2.16667 NA intron (NM_001244973, intron 1 of 16) intron (NM_001244973, intron 1 of 16) 3050 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 287.834 chr8 59388046 59388312 + 2.16667 NA Intergenic Intergenic 268969 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 342.667-4 chr14 20804870 20805163 + 2.16667 NA Intergenic Intergenic -2172 NM_002933 6035 Hs.78224 NM_002933 ENSG00000129538 RNASE1 RAC1|RIB1|RNS1 ribonuclease A family member 1, pancreatic protein-coding 485.001 chr4 136213447 136213800 + 2.16667 NA Intergenic L1PA13|LINE|L1 -299943 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 426.667-3 chr4 154298550 154298920 + 2.16667 NA intron (NM_001358235, intron 12 of 19) intron (NM_001358235, intron 12 of 19) 193064 NM_001358235 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 311.334 chr1 147201333 147201481 + 2.16667 NA exon (NM_001144829, exon 7 of 9) exon (NM_001144829, exon 7 of 9) 23556 NR_002305 171423 Hs.658566 NR_002305 PDIA3P1 ERp60|GRP58P|PDIA3P protein disulfide isomerase family A member 3 pseudogene 1 pseudo 465.666 chr16 63840343 63840748 + 2.16667 NA Intergenic L1PA15|LINE|L1 1281518 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 539.5 chr6 13644162 13644534 + 2.16667 NA intron (NM_005493, intron 6 of 13) intron (NM_005493, intron 6 of 13) 29013 NM_016167 51406 Hs.306242 NM_016167 ENSG00000225921 NOL7 C6orf90|PQBP3|RARG-1|dJ223E5.2 nucleolar protein 7 protein-coding 301.833-4 chr4 30378084 30378357 + 2.16667 NA Intergenic Intergenic -342149 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 377.501-2 chr5 4171957 4172222 + 2.16667 NA Intergenic Intergenic 576257 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 591.501 chr2 63962854 63963355 + 2.16667 NA intron (NM_001005739, intron 6 of 22) intron (NM_001005739, intron 6 of 22) 56324 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 332-6 chr4 180296752 180296927 + 2.16667 NA Intergenic Intergenic 862310 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 357.334-2 chr4 92088595 92088819 + 2.16667 NA Intergenic Intergenic 188595 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 637.833 chr3 119066307 119066861 + 2.16667 NA intron (NM_152538, intron 3 of 8) MER63A|DNA|hAT-Blackjack -31738 NM_001353321 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 230.167-25 chr8 133179801 133179993 + 2.16667 NA Intergenic ERVL-E-int|LTR|ERVL -11142 NR_037944 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 284.667-12 chr4 62398149 62398316 + 2.16667 NA Intergenic Intergenic -236467 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 518.666-2 chr16 12465111 12465904 + 2.16667 NA intron (NM_032167, intron 18 of 20) L1MA9|LINE|L1 -254814 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 515.999 chr8 107955954 107956240 + 2.16667 NA intron (NM_001282863, intron 4 of 4) intron (NM_001282863, intron 4 of 4) 125842 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 460.166 chr14 51252784 51253158 + 2.16667 NA intron (NM_030755, intron 7 of 7) intron (NM_030755, intron 7 of 7) 12724 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 463.334 chr20 55403637 55404049 + 2.16667 NA Intergenic L1MA3|LINE|L1 -19200 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 240.333-32 chr8 89589910 89590138 + 2.16667 NA Intergenic Intergenic 167687 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 236.167-10 chr18 73710686 73710878 + 2.16667 NA Intergenic Intergenic 385841 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 243.5-11 chr16 6685878 6686017 + 2.16667 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -87862 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 730.833 chr14 58625609 58626414 + 2.16667 NA Intergenic Intergenic -8057 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 349.667-4 chr21 35250334 35250583 + 2.16667 NA Intergenic THE1B|LTR|ERVL-MaLR -201160 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 233-24 chr8 131416940 131417117 + 2.16667 NA Intergenic Intergenic -376119 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 358.5 chr10 120784585 120784824 + 2.16667 NA intron (NR_033850, intron 1 of 2) intron (NR_033850, intron 1 of 2) 66475 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 347.834-2 chr20 34097430 34097723 + 2.16667 NA intron (NM_003908, intron 4 of 8) intron (NM_003908, intron 4 of 8) 14667 NM_001316363 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 293.834 chr1 62602938 62603147 + 2 NA intron (NM_014495, intron 5 of 6) intron (NM_014495, intron 5 of 6) 5522 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 292.667-7 chr2 99927156 99927327 + 2 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 178342 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 370.333-2 chr2 14687851 14688152 + 2 NA Intergenic Intergenic 55284 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 303.5-7 chr7 18358171 18358552 + 2 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 68269 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 390-6 chr4 31515269 31515871 + 2 NA intron (NR_149121, intron 1 of 2) L3|LINE|CR1 9026 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 278.5-4 chr11 29686838 29687015 + 2 NA Intergenic Intergenic 68124 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 294.167-5 chr2 31771129 31771390 + 2 NA Intergenic Intergenic 32721 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 555.334 chr14 37349522 37350051 + 2 NA intron (NM_138731, intron 10 of 13) L2a|LINE|L2 151849 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 385.5 chr1 214252295 214252616 + 2 NA Intergenic MIR3|SINE|MIR -28704 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 313.5-12 chr8 86726318 86726533 + 2 NA intron (NM_019098, intron 3 of 17) intron (NM_019098, intron 3 of 17) 17250 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 550 chr16 60198873 60199398 + 2 NA Intergenic Intergenic 160658 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 208.667-41 chr7 23783823 23783968 + 2 NA intron (NM_031414, intron 17 of 23) intron (NM_031414, intron 17 of 23) 73676 NM_001260505 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 293-3 chr2 103891907 103892081 + 2 NA Intergenic Intergenic 516338 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 270.167-13 chr7 75561763 75561960 + 2 NA intron (NM_005338, intron 12 of 30) AluJr|SINE|Alu -33738 NR_028059 5387 Hs.659871 NM_005395 ENSG00000127957 PMS2P3 PMS2L3|PMS2L9|PMS5|PMSR3 PMS1 homolog 2, mismatch repair system component pseudogene 3 pseudo 317.5 chr1 61163189 61163430 + 2 NA intron (NM_001134673, intron 2 of 10) MIRb|SINE|MIR 80748 NM_005595 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 302.5-4 chr2 190484268 190484501 + 2 NA intron (NM_017694, intron 4 of 7) intron (NM_017694, intron 4 of 7) 50338 NR_136298 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 275.666-3 chr2 51163376 51163759 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 130966 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 238.833-14 chr6 64666041 64666172 + 2 NA intron (NM_001292009, intron 22 of 43) L1PA14|LINE|L1 -635312 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 463.999 chr17 61041740 61042162 + 2 NA intron (NM_001330413, intron 20 of 25) L2c|LINE|L2 325753 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 262-10 chr2 199597474 199597726 + 2 NA Intergenic L2c|LINE|L2 -10468 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 372.333 chr6 124400311 124400642 + 2 NA intron (NM_153355, intron 3 of 5) intron (NM_153355, intron 3 of 5) 117471 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 450.5 chrX 42065223 42065608 + 2 NA Intergenic L1MC|LINE|L1 -141861 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 235.5-34 chr8 129116463 129116595 + 2 NA Intergenic MLT2B1|LTR|ERVL 124711 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 238-13 chr2 202387159 202387319 + 2 NA intron (NM_001204, intron 1 of 12) intron (NM_001204, intron 1 of 12) 10912 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 293-5 chr6 147765891 147766160 + 2 NA Intergenic HAL1|LINE|L1 257335 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 382.667 chr1 184420607 184420973 + 2 NA intron (NM_030806, intron 1 of 5) intron (NM_030806, intron 1 of 5) 33761 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 386-3 chr14 31693251 31693600 + 2 NA intron (NR_120408, intron 6 of 9) intron (NR_120408, intron 6 of 9) -21144 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 266.167 chr1 65322294 65322575 + 2 NA intron (NM_001256864, intron 1 of 18) intron (NM_001256864, intron 1 of 18) 12891 NM_001256864 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 309.334 chr12 5133614 5133889 + 2 NA Intergenic Tigger14a|DNA|TcMar-Tigger 89872 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 382.5 chr1 182721884 182722169 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 9164 NR_146548 105371644 Hs.496952 NR_146548 ENSG00000227181 LINC01688 - long intergenic non-protein coding RNA 1688 ncRNA 383.667-5 chr8 114739545 114739938 + 2 NA Intergenic Intergenic 928272 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 458.5 chr11 91761890 91762298 + 2 NA Intergenic MIR|SINE|MIR -462940 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 133.167-73 chr9 120767973 120768101 + 2 NA intron (NM_012164, intron 7 of 7) intron (NM_012164, intron 7 of 7) 25379 NM_012164 26190 Hs.494985 NM_012164 ENSG00000119402 FBXW2 FBW2|Fwd2|Md6 F-box and WD repeat domain containing 2 protein-coding 272.666-4 chr7 83101053 83101220 + 2 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 61748 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 200-61 chr6 139152055 139152187 + 2 NA intron (NM_016217, intron 1 of 3) intron (NM_016217, intron 1 of 3) 17041 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 289.333-11 chr5 23337219 23337446 + 2 NA Intergenic Intergenic -170277 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 437.999 chr1 43193985 43194261 + 2 NA intron (NM_001195831, intron 6 of 23) L1MB7|LINE|L1 -21553 NM_001159936 10969 Hs.346868 NM_006824 ENSG00000117395 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 238.667-27 chr5 42118570 42118747 + 2 NA Intergenic Intergenic 56687 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 219.5-10 chr14 52445596 52445732 + 2 NA intron (NM_001160047, intron 18 of 20) Tigger3a|DNA|TcMar-Tigger 106841 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 366 chr14 44492386 44492830 + 2 NA Intergenic MER77B|LTR|ERVL 14675 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 534.5 chr2 212423642 212424270 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 2404 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 210.667-24 chr2 98720965 98721123 + 2 NA intron (NM_012214, intron 2 of 15) L1M4b|LINE|L1 10088 NM_012214 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 482 chr6 115523577 115524053 + 2 NA Intergenic Intergenic 120020 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 422.666 chr1 175195426 175195796 + 2 NA Intergenic Intergenic -2624 NM_001319230 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 278.667-3 chr10 115733195 115733418 + 2 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 461483 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 270.334 chr1 97749891 97750113 + 2 NA intron (NM_000110, intron 3 of 22) intron (NM_000110, intron 3 of 22) -46919 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 267-2 chr10 3342587 3342814 + 2 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) 24005 NR_131187 105376360 Hs.212226 NR_131187 LOC105376360 - uncharacterized LOC105376360 ncRNA 401.834-3 chr2 54427725 54428105 + 2 NA Intergenic L1ME3A|LINE|L1 -28412 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 216.5-8 chr15 91433923 91434061 + 2 NA Intergenic Intergenic -29347 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 471.333 chr6 61779169 61779417 + 2 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 205163 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 318.666-2 chr10 95609391 95609727 + 2 NA intron (NM_001323414, intron 17 of 17) MIRb|SINE|MIR 47152 NM_001323416 5832 Hs.500645 NM_002860 ENSG00000059573 ALDH18A1 ADCL3|ARCL3A|GSAS|P5CS|PYCS|SPG9|SPG9A|SPG9B aldehyde dehydrogenase 18 family member A1 protein-coding 381.167-2 chr5 53380424 53380768 + 2 NA Intergenic Intergenic -100033 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 785 chr6 45299393 45300195 + 2 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -28523 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 441.166 chr14 59708350 59708707 + 2 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -61508 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 336.334 chr6 44884346 44884664 + 2 NA intron (NM_181356, intron 12 of 12) L1P3|LINE|L1 313265 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 261.833-14 chr5 63465826 63466044 + 2 NA Intergenic Intergenic 496357 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 377.333-6 chr6 38085371 38085582 + 2 NA intron (NM_021943, intron 4 of 5) intron (NM_021943, intron 4 of 5) 265749 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 343.333-6 chr8 140022410 140022666 + 2 NA intron (NM_001160372, intron 18 of 22) intron (NM_001160372, intron 18 of 22) 77997 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 289-11 chr4 124945669 124945943 + 2 NA Intergenic Intergenic -233074 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 332.667-5 chr6 40772986 40773213 + 2 NA Intergenic MIR3|SINE|MIR -185735 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 165.333-24 chr15 58673556 58673662 + 2 NA intron (NM_001320570, intron 4 of 14) intron (NM_001320570, intron 4 of 14) 19998 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 331-11 chr9 17283947 17284287 + 2 NA intron (NM_001365029, intron 6 of 25) AluSq2|SINE|Alu 149077 NM_001286984 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 336.667-6 chr6 20842101 20842334 + 2 NA intron (NM_017774, intron 8 of 15) intron (NM_017774, intron 8 of 15) 307760 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 272.167-7 chr12 17255560 17255822 + 2 NA Intergenic Intergenic 266944 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 196-38 chr20 14918887 14919063 + 2 NA intron (NR_072988, intron 1 of 1) intron (NR_072988, intron 1 of 1) 10543 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 635.333 chr4 52366176 52366944 + 2 NA Intergenic Intergenic 289979 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 606.833 chr14 67364662 67365123 + 2 NA exon (NM_004094, exon 2 of 8) exon (NM_004094, exon 2 of 8) 4564 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 204.667-6 chr10 60310692 60310816 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 79121 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 242-17 chr5 51486494 51486671 + 2 NA Intergenic Intergenic 103134 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 359.833 chr1 173547671 173548219 + 2 NA intron (NM_178527, intron 12 of 27) intron (NM_178527, intron 12 of 27) 55127 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 371-5 chr4 97370043 97370253 + 2 NA intron (NR_102713, intron 1 of 5) L1MB4|LINE|L1 3222 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 167-12 chr10 104629991 104630087 + 2 NA Intergenic AluJr|SINE|Alu -11251 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 264.5-5 chr2 146150116 146150355 + 2 NA Intergenic Intergenic -436822 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 402-2 chr2 15156256 15156522 + 2 NA Intergenic Intergenic 404945 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 355.666 chr5 110747077 110747327 + 2 NA intron (NM_138773, intron 4 of 7) L1ME4b|LINE|L1 8195 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 257.5-14 chr5 158930928 158931159 + 2 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 166913 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 299.333 chr12 7400356 7400570 + 2 NA intron (NM_001297650, intron 6 of 19) intron (NM_001297650, intron 6 of 19) 43722 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 328-13 chr7 91356788 91357006 + 2 NA Intergenic Intergenic 92464 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 324-8 chr5 21857554 21857781 + 2 NA intron (NM_004061, intron 6 of 14) intron (NM_004061, intron 6 of 14) -26787 NR_132787 106635539 NR_132787 SNORA105A - small nucleolar RNA, H/ACA box 105A snoRNA 260-15 chr3 112926057 112926267 + 2 NA intron (NM_138806, intron 5 of 7) intron (NM_138806, intron 5 of 7) 48941 NM_138939 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 283.833-7 chr8 68637698 68638136 + 2 NA intron (NR_146186, intron 7 of 12) MER89-int|LTR|ERV1 -306426 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 378-3 chr15 92832391 92832662 + 2 NA Intergenic Intergenic 37042 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 359.166 chr14 45965880 45966312 + 2 NA Intergenic MLT2B1|LTR|ERVL -98063 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 369-4 chr8 138874245 138874486 + 2 NA intron (NM_152888, intron 3 of 64) MLT1K|LTR|ERVL-MaLR 39676 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 218-38 chr5 67024496 67024658 + 2 NA intron (NM_001297651, intron 1 of 25) intron (NM_001297651, intron 1 of 25) 19922 NM_001297651 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 195.5-37 chr7 30115106 30115293 + 2 NA intron (NM_001350973, intron 13 of 13) L1MB7|LINE|L1 -19787 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 236.667-38 chr7 104615386 104615554 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 188622 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 479.333 chr15 97555361 97555656 + 2 NA intron (NR_110756, intron 2 of 3) L1ME4a|LINE|L1 5190 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 243-11 chr12 59775690 59775904 + 2 NA intron (NR_073055, intron 6 of 6) intron (NR_073055, intron 6 of 6) 86427 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 295.167-12 chr8 47281902 47282162 + 2 NA intron (NM_001352956, intron 2 of 16) Tigger1|DNA|TcMar-Tigger 21094 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 369-5 chr9 102800013 102800336 + 2 NA Intergenic L1MEf|LINE|L1 -195159 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 281.5-8 chr5 45613867 45614265 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 82314 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 204.333-45 chr5 155545328 155545470 + 2 NA Intergenic L1ME3B|LINE|L1 531644 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 324-4 chr14 31418553 31418800 + 2 NA intron (NM_015473, intron 1 of 35) intron (NM_015473, intron 1 of 35) 1874 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 406 chr12 10620982 10621401 + 2 NA intron (NM_018423, intron 10 of 10) intron (NM_018423, intron 10 of 10) -7582 NR_135121 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 424.5 chr3 38569332 38569720 + 2 NA intron (NM_198056, intron 20 of 27) L1ME4a|LINE|L1 73186 NM_005107 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 252.667-11 chr18 54581596 54581952 + 2 NA Intergenic Intergenic -5985 NM_001307955 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 606 chr16 86974367 86974769 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -83216 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 378.666-3 chr8 122220539 122220814 + 2 NA Intergenic L2|LINE|L2 347968 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 330.5-4 chr5 66525771 66525956 + 2 NA Intergenic Intergenic -14259 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 311.333-9 chr3 99630534 99630898 + 2 NA Intergenic Intergenic -7878 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 516 chr6 55207612 55208006 + 2 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) 101349 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 582.5 chr2 115752848 115753448 + 2 NA intron (NM_001321912, intron 11 of 25) intron (NM_001321912, intron 11 of 25) 409333 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 390.667 chr14 61263055 61263387 + 2 NA Intergenic L1ME3F|LINE|L1 18117 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 279-3 chr10 33901348 33901560 + 2 NA Intergenic Intergenic -128774 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 363.667-5 chr8 26686434 26686699 + 2 NA Intergenic L1MA9|LINE|L1 108161 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 516.666 chr3 147542870 147543299 + 2 NA Intergenic Intergenic 121757 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 388.167 chr1 226307599 226307915 + 2 NA intron (NM_001270410, intron 1 of 14) MER3|DNA|hAT-Charlie 1407 NM_001366245 286826 Hs.120817 NM_173083 ENSG00000183814 LIN9 BARA|BARPsv|Lin-9|TGS|TGS1|TGS2 lin-9 DREAM MuvB core complex component protein-coding 287.5-10 chr2 28685015 28685196 + 2 NA Intergenic Intergenic 51100 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 409 chr1 119771948 119772415 + 2 NA Intergenic MER57C1|LTR|ERV1 -3249 NM_005518 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 182.667-26 chr17 59170355 59170460 + 2 NA intron (NM_018304, intron 2 of 9) AluJr|SINE|Alu 14661 NM_018304 55771 Hs.631750 NM_018304 ENSG00000068489 PRR11 - proline rich 11 protein-coding 275.834-2 chr2 204847878 204848133 + 2 NA intron (NM_205863, intron 2 of 21) Tigger7|DNA|TcMar-Tigger 302530 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 245.667-11 chr15 87090432 87090605 + 2 NA Intergenic Intergenic -102092 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 345 chr3 14629195 14629529 + 2 NA Intergenic Intergenic -22384 NR_135523 51244 Hs.517820 NM_016474 ENSG00000154781 CCDC174 C3orf19|HSPC212|IHPM|IHPMR coiled-coil domain containing 174 protein-coding 340.334 chr1 75587569 75587854 + 2 NA intron (NM_152697, intron 1 of 23) intron (NM_152697, intron 1 of 23) 23403 NM_152697 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 181.667-9 chr11 35649051 35649242 + 2 NA Intergenic Intergenic -13629 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 437.833 chr5 177228800 177229257 + 2 NA intron (NM_172349, intron 6 of 23) L1MB8|LINE|L1 74691 NM_001031677 53917 Hs.16258 NM_130781 ENSG00000169228 RAB24 - RAB24, member RAS oncogene family protein-coding 281-18 chr6 120163340 120163528 + 2 NA Intergenic Intergenic 148255 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 363-4 chr3 156600753 156601098 + 2 NA Intergenic Intergenic -45725 NM_007107 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 414-5 chr2 165692152 165692544 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 101899 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 403-4 chr8 84903928 84904303 + 2 NA intron (NM_001287244, intron 7 of 7) intron (NM_001287244, intron 7 of 7) 198188 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 292 chr10 51624305 51624552 + 2 NA intron (NM_001098512, intron 3 of 17) L3|LINE|CR1 75167 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 408-3 chr5 12010868 12011206 + 2 NA Intergenic Intergenic -106591 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 216.667-46 chr7 119710067 119710244 + 2 NA intron (NR_131962, intron 2 of 2) intron (NR_131962, intron 2 of 2) 197220 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 253.333-8 chr14 75528855 75529005 + 2 NA intron (NM_006399, intron 2 of 2) intron (NM_006399, intron 2 of 2) 6461 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 199.5-33 chr5 37223988 37224190 + 2 NA intron (NM_023073, intron 14 of 51) intron (NM_023073, intron 14 of 51) -24957 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 362.167-5 chr2 51252581 51252861 + 2 NA intron (NR_135237, intron 2 of 10) L1MA4A|LINE|L1 220120 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 342-5 chr15 61286538 61286784 + 2 NA Intergenic L1MA4A|LINE|L1 -57359 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 344-3 chr3 193341660 193341990 + 2 NA intron (NM_198505, intron 9 of 29) MamGypLTR2b|LTR|Gypsy 34581 NR_046758 100874218 Hs.407490 NR_046758 ATP13A5-AS1 - ATP13A5 antisense RNA 1 ncRNA 509.501 chr17 58813319 58813639 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 57610 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 385-4 chr3 57664021 57664270 + 2 NA intron (NM_152678, intron 4 of 19) intron (NM_152678, intron 4 of 19) 28932 NM_152678 201627 Hs.91085 NM_152678 ENSG00000174839 DENND6A AFI1A|FAM116A DENN domain containing 6A protein-coding 268-8 chr19 33570558 33570712 + 2 NA Intergenic L1MB4|LINE|L1 -48844 NM_001166057 5184 Hs.36473 NM_000285 ENSG00000124299 PEPD PROLIDASE peptidase D protein-coding 318.833-9 chr4 57508878 57509226 + 2 NA Intergenic Intergenic 83180 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 540 chr11 40071386 40072116 + 2 NA Intergenic Intergenic 221379 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 227.5-20 chr3 156285930 156286090 + 2 NA intron (NM_003471, intron 1 of 13) intron (NM_003471, intron 1 of 13) -4977 NM_172159 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 381.166 chr7 47321137 47321444 + 2 NA intron (NM_022748, intron 20 of 30) intron (NM_022748, intron 20 of 30) 143513 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 218.667-22 chr20 56164438 56164666 + 2 NA Intergenic Intergenic -84180 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 614.833 chr5 103269839 103270651 + 2 NA intron (NM_033211, intron 2 of 2) intron (NM_033211, intron 2 of 2) 10821 NM_001316968 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 506.834 chr18 10822055 10822447 + 2 NA intron (NM_022068, intron 7 of 51) intron (NM_022068, intron 7 of 51) -62602 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 665.333 chr5 84573535 84574267 + 2 NA Intergenic Intergenic -189021 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 380 chr3 85976865 85977221 + 2 NA intron (NM_001256504, intron 9 of 10) intron (NM_001256504, intron 9 of 10) -148993 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 321.166 chr10 63189062 63189744 + 2 NA exon (NM_001322252, exon 17 of 25) exon (NM_001322252, exon 17 of 25) 56075 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 351.167-4 chr10 111062329 111062693 + 2 NA Intergenic AluSz|SINE|Alu -14518 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 315.333-3 chr10 23520929 23521128 + 2 NA Intergenic MER34B|LTR|ERV1 81759 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 260.5-6 chr16 13954194 13954367 + 2 NA Intergenic Intergenic 34123 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 300.167-7 chr5 74761039 74761275 + 2 NA intron (NR_104006, intron 2 of 19) intron (NR_104006, intron 2 of 19) 5960 NM_001281302 84340 Hs.277154 NM_032380 ENSG00000164347 GFM2 EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 G elongation factor mitochondrial 2 protein-coding 464.333-3 chr5 157230647 157231078 + 2 NA intron (NM_005546, intron 7 of 16) intron (NM_005546, intron 7 of 16) -35261 NM_001291722 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 311.5-7 chr2 162781301 162781653 + 2 NA intron (NR_110258, intron 2 of 4) intron (NR_110258, intron 2 of 4) 12541 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 212.667-4 chr1 159665953 159666272 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie 48477 NM_001329057 1401 Hs.76452 NM_000567 ENSG00000132693 CRP PTX1 C-reactive protein protein-coding 443.333-2 chr14 46593339 46593727 + 2 NA Intergenic HAL1|LINE|L1 58248 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 245.834-8 chr5 69130563 69130738 + 2 NA 3' UTR (NM_022902, exon 16 of 16) 3' UTR (NM_022902, exon 16 of 16) -30158 NR_145732 109616958 NR_145732 ENSG00000280894 SNORA50D - small nucleolar RNA, H/ACA box 50D snoRNA 384.5 chr14 28654194 28654517 + 2 NA Intergenic Intergenic 110964 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 440.833 chr2 99366485 99366963 + 2 NA intron (NM_015904, intron 6 of 23) L1ME1|LINE|L1 29335 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 205.833-3 chr1 210007031 210007176 + 2 NA intron (NM_001146261, intron 3 of 9) intron (NM_001146261, intron 3 of 9) 68886 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 292.334-3 chr15 60474366 60474625 + 2 NA intron (NM_024611, intron 3 of 15) FLAM_C|SINE|Alu 4647 NM_001018089 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 454.501 chr10 105462881 105463273 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 357256 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 329.166-2 chr11 23798460 23798672 + 2 NA Intergenic Intergenic -379376 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 480.5 chr2 151816955 151817331 + 2 NA intron (NM_177985, intron 1 of 5) intron (NM_177985, intron 1 of 5) 11278 NM_001037174 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 517 chr2 50739511 50739855 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -43421 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 400.333 chr2 23010581 23011001 + 2 NA Intergenic L1MA10|LINE|L1 -374388 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 327.333-15 chr7 141768764 141769051 + 2 NA Intergenic L2c|LINE|L2 4810 NM_016943 50831 Hs.676011 NM_016943 ENSG00000127362 TAS2R3 T2R3 taste 2 receptor member 3 protein-coding 241.333-9 chr13 93155546 93155722 + 2 NA Intergenic Intergenic -71173 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 322.5-3 chr12 16632978 16633405 + 2 NA Intergenic Intergenic -24977 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 263.833-14 chr7 92822189 92822418 + 2 NA intron (NM_001259, intron 2 of 7) intron (NM_001259, intron 2 of 7) 11656 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 342.334 chr14 60004646 60004892 + 2 NA intron (NR_075071, intron 21 of 32) intron (NR_075071, intron 21 of 32) 85056 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 709.332 chr8 71051593 71052077 + 2 NA Intergenic Intergenic 304871 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 365.167-2 chr8 85847829 85848088 + 2 NA Intergenic MER65-int|LTR|ERV1 -20016 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 343-6 chr5 143529426 143529717 + 2 NA Intergenic L1ME4b|LINE|L1 -94059 NM_001018075 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 433-2 chr9 21084680 21085157 + 2 NA Intergenic L1M5|LINE|L1 -6976 NM_002176 3456 Hs.93177 NM_002176 ENSG00000171855 IFNB1 IFB|IFF|IFN-beta|IFNB interferon beta 1 protein-coding 386.333 chr1 70682781 70682989 + 2 NA Intergenic L1PB4|LINE|L1 -23568 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 382 chr18 946868 947092 + 2 NA Intergenic L1M2|LINE|L1 -18987 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 317 chr1 93152204 93152521 + 2 NA non-coding (NR_030761, exon 5 of 5) non-coding (NR_030761, exon 5 of 5) 28051 NR_030761 50999 Hs.482873 NM_016040 ENSG00000117500 TMED5 CGI-100|p24g2|p28 transmembrane p24 trafficking protein 5 protein-coding 373.667-3 chr8 136761280 136761644 + 2 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 230664 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 272.834-3 chr6 67681702 67681934 + 2 NA Intergenic Intergenic -373533 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 357.333-5 chr4 168052072 168052300 + 2 NA Intergenic L1MB7|LINE|L1 -40351 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 348.667-3 chr3 98957525 98957778 + 2 NA Intergenic MIRb|SINE|MIR -55956 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 214.666-5 chr4 81794506 81794684 + 2 NA Intergenic Intergenic -322688 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 613.332 chr4 76790331 76790890 + 2 NA Intergenic L1MA5|LINE|L1 107534 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 500.667 chr12 118623880 118624412 + 2 NA Intergenic Intergenic 137533 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 314.666-3 chr8 121524908 121525150 + 2 NA Intergenic MIR|SINE|MIR -114317 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 371.833-4 chr6 74684398 74684635 + 2 NA intron (NR_110856, intron 3 of 3) AluJr|SINE|Alu 444266 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 427.001 chr8 9026761 9027061 + 2 NA intron (NM_001354638, intron 6 of 7) L1MB3|LINE|L1 -21534 NR_039804 100616350 NR_039804 ENSG00000263407 MIR4660 - microRNA 4660 ncRNA 507 chr4 66646862 66647445 + 2 NA Intergenic Intergenic 370329 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 287.5-16 chr7 42683717 42684038 + 2 NA intron (NR_110833, intron 1 of 2) intron (NR_110833, intron 1 of 2) 22570 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 342-2 chr13 28381819 28382127 + 2 NA intron (NM_001160030, intron 14 of 14) L2a|LINE|L2 113155 NM_001160030 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 220-2 chr10 92261275 92261398 + 2 NA intron (NM_014912, intron 1 of 9) MER91A|DNA|hAT-Tip100 -18057 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 295.5-11 chr8 103625548 103625864 + 2 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -123796 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 311.333-8 chr3 87399093 87399284 + 2 NA Intergenic Intergenic -122604 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 364.5-3 chr16 35339488 35339792 + 2 NA Intergenic HSAT6|Satellite|Satellite -23776 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 376.667-4 chr5 45608959 45609492 + 2 NA intron (NM_021072, intron 2 of 7) L1M5|LINE|L1 87155 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 279.667-20 chr9 71924078 71924392 + 2 NA intron (NM_001365055, intron 2 of 4) intron (NM_001365055, intron 2 of 4) 12596 NR_157408 138241 Hs.534190 NM_182505 ENSG00000155621 C9orf85 - chromosome 9 open reading frame 85 protein-coding 337.167-5 chr5 104419078 104419433 + 2 NA Intergenic Intergenic -680219 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 426.333-2 chr11 67474369 67474848 + 2 NA Intergenic MER66-int|LTR|ERV1 -5357 NR_073412 80194 Hs.288761 NM_025124 ENSG00000172663 TMEM134 - transmembrane protein 134 protein-coding 259.667-14 chr2 68267432 68267664 + 2 NA Intergenic L1PB4|LINE|L1 -15016 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 213-25 chr5 128512685 128512796 + 2 NA intron (NM_001999, intron 5 of 64) intron (NM_001999, intron 5 of 64) 25505 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 666 chr2 114327086 114328118 + 2 NA Intergenic L1ME3B|LINE|L1 -115039 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 301.333-7 chr2 135134192 135134467 + 2 NA intron (NM_001172435, intron 15 of 24) intron (NM_001172435, intron 15 of 24) -2299 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 400-4 chr5 67953513 67953730 + 2 NA Intergenic L1MEd|LINE|L1 160408 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 261.334-4 chrX 67573055 67573199 + 2 NA intron (NM_001011645, intron 2 of 8) intron (NM_001011645, intron 2 of 8) 28504 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 192.5-36 chr4 46261507 46261746 + 2 NA intron (NM_001286827, intron 8 of 9) MIRb|SINE|MIR 127753 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 154.667-72 chr9 37319144 37319232 + 2 NA intron (NR_110317, intron 4 of 7) L1MD|LINE|L1 -103508 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 604.501-2 chr3 84609326 84609788 + 2 NA Intergenic Intergenic 260018 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 280.334 chr14 51408634 51408899 + 2 NA Intergenic L1PREC2|LINE|L1 -11631 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 412.333-2 chr7 27070471 27070885 + 2 NA Intergenic Intergenic 25322 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 375.666 chr7 2344756 2345150 + 2 NA Intergenic L1ME3Cz|LINE|L1 -9133 NM_001362793 8662 Hs.371001 NM_003751 ENSG00000106263 EIF3B EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1 eukaryotic translation initiation factor 3 subunit B protein-coding 400.833 chr8 107432939 107433225 + 2 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 64836 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 302-4 chr1 149988639 149988888 + 2 NA intron (NM_020205, intron 1 of 11) intron (NM_020205, intron 1 of 11) 21963 NM_020205 56957 Hs.98322 NM_020205 ENSG00000264522 OTUD7B CEZANNE|ZA20D1 OTU deubiquitinase 7B protein-coding 254.5-12 chr5 51989530 51989819 + 2 NA Intergenic Intergenic -18357 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 238-31 chr8 135963592 135963754 + 2 NA Intergenic L2|LINE|L2 506217 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 351.167-3 chr10 96902127 96902614 + 2 NA intron (NM_001170766, intron 2 of 8) intron (NM_001170766, intron 2 of 8) 69425 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 229.667-37 chr9 88103607 88103798 + 2 NA Intergenic AluSx|SINE|Alu -25802 NR_135138 102724156 Hs.633031 NR_135137 LOC102724156 - uncharacterized LOC102724156 ncRNA 391.833-2 chr14 67366333 67366671 + 2 NA intron (NM_004094, intron 2 of 7) L1ME4b|LINE|L1 6174 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 534.334 chr14 63541202 63541482 + 2 NA intron (NR_104104, intron 1 of 12) intron (NR_104104, intron 1 of 12) -1442 NR_158218 112268140 Hs.632347 NR_158218 LOC112268140 - loricrin-like ncRNA 500.5 chr6 66550573 66550848 + 2 NA Intergenic Intergenic 762831 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 529.5 chr14 49369831 49370200 + 2 NA Intergenic Intergenic 216365 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 451.834 chr7 85545794 85546172 + 2 NA Intergenic Intergenic 124861 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 351 chr14 47036881 47037305 + 2 NA intron (NM_001113498, intron 7 of 16) intron (NM_001113498, intron 7 of 16) 306153 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 542.5 chr9 71531732 71532220 + 2 NA Intergenic Intergenic -85005 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 362.5-4 chr6 43323573 43323956 + 2 NA Intergenic L1MB5|LINE|L1 -14938 NM_206922 401262 Hs.653165 NM_206922 ENSG00000146215 CRIP3 CRP-3|TLP|TLP-A|h6LIMo cysteine rich protein 3 protein-coding 404.001 chr4 139495451 139495831 + 2 NA TTS (NM_001306199) TTS (NM_001306199) 41520 NM_031296 83452 Hs.591679 NM_031296 ENSG00000172007 RAB33B SMC2 RAB33B, member RAS oncogene family protein-coding 352.001-2 chr2 50232054 50232273 + 2 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) 115591 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 299-9 chr2 220475479 220475655 + 2 NA Intergenic L1MD3|LINE|L1 -569002 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 269.833-2 chr1 197348877 197349100 + 2 NA intron (NM_001257966, intron 4 of 9) Tigger3b|DNA|TcMar-Tigger 80736 NM_201253 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 225.5-23 chr17 64512391 64512599 + 2 NA intron (NM_138363, intron 3 of 19) intron (NM_138363, intron 3 of 19) 5518 NM_001316990 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 228.667-28 chr3 30367749 30367887 + 2 NA Intergenic L1MC1|LINE|L1 -151050 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 279.5-3 chr20 47929054 47929288 + 2 NA Intergenic L1MC5|LINE|L1 -54055 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 279-6 chr16 76957371 76957579 + 2 NA Intergenic Intergenic 88539 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 488.333 chr2 192683258 192683818 + 2 NA Intergenic Intergenic -66307 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 407 chr2 70427049 70427263 + 2 NA Intergenic L1MA2|LINE|L1 54484 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 305.334-7 chr7 110193040 110193350 + 2 NA Intergenic Intergenic -232982 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 498.667 chr5 11800245 11800729 + 2 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 103959 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 437.5 chr11 75539651 75540055 + 2 NA Intergenic Intergenic -13912 NM_030792 81544 Hs.503297 NM_030792 ENSG00000158555 GDPD5 GDE2|PP1665 glycerophosphodiester phosphodiesterase domain containing 5 protein-coding 436.666-2 chr8 25056754 25057117 + 2 NA Intergenic L1PA16|LINE|L1 -100066 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 392.667-2 chr5 9237270 9237578 + 2 NA intron (NM_003966, intron 6 of 22) intron (NM_003966, intron 6 of 22) -183529 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 448-2 chr6 49473093 49473452 + 2 NA intron (NM_018132, intron 5 of 8) intron (NM_018132, intron 5 of 8) 9902 NM_018132 55166 Hs.88663 NM_018132 ENSG00000031691 CENPQ C6orf139|CENP-Q centromere protein Q protein-coding 459.833 chr19 30219161 30219492 + 2 NA Intergenic Intergenic -153058 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 585 chr3 152127401 152127964 + 2 NA Intergenic Intergenic 77747 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 259-13 chr3 116089737 116089961 + 2 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -184723 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 407.001 chr11 97761135 97761462 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack 1252873 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 384 chr14 55595315 55595624 + 2 NA intron (NM_004986, intron 1 of 41) intron (NM_004986, intron 1 of 41) 15262 NM_001271014 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 302-7 chr1 217794864 217795078 + 2 NA intron (NM_138796, intron 8 of 10) L3|LINE|CR1 -9851 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 496.334 chr2 107601160 107601935 + 2 NA Intergenic L1M4b|LINE|L1 72128 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 327.833-4 chr4 59263013 59263260 + 2 NA Intergenic L1MEf|LINE|L1 249563 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 285-7 chr6 39610386 39610593 + 2 NA intron (NM_001289020, intron 6 of 21) Penelope1_Vert|LINE|Penelope 114919 NM_001289021 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 480 chr4 99143372 99143670 + 2 NA intron (NM_001306172, intron 1 of 9) intron (NM_001306172, intron 1 of 9) 777 NM_000670 127 Hs.1219 NM_000670 ENSG00000198099 ADH4 ADH-2|HEL-S-4 alcohol dehydrogenase 4 (class II), pi polypeptide protein-coding 552.501 chr6 34876947 34877663 + 2 NA TTS (NM_005643) TTS (NM_005643) 10737 NM_005643 6882 Hs.112444 NM_005643 ENSG00000064995 TAF11 MGC:15243|PRO2134|TAF2I|TAFII28 TATA-box binding protein associated factor 11 protein-coding 349.501 chr2 56992185 56992479 + 2 NA Intergenic Intergenic -806562 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 271.333-7 chr16 62786875 62787122 + 2 NA Intergenic L1MB8|LINE|L1 -750560 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 240.834-3 chr17 77904948 77905122 + 2 NA Intergenic (TGTATA)n|Simple_repeat|Simple_repeat -20948 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 308.5-3 chr10 24173849 24174062 + 2 NA intron (NM_001098500, intron 2 of 18) LTR104_Mam|LTR|Gypsy -34836 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 332.167-3 chr15 89523773 89523966 + 2 NA non-coding (NR_027074, exon 1 of 3) non-coding (NR_027074, exon 1 of 3) 165 NR_027076 283761 Hs.459288 NR_027074 LINC00928 - long intergenic non-protein coding RNA 928 ncRNA 292-14 chr8 124461373 124461658 + 2 NA TTS (NR_108047) TTS (NR_108047) 10695 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 191.667-11 chr11 82359727 82359972 + 2 NA intron (NR_120571, intron 1 of 7) intron (NR_120571, intron 1 of 7) 44064 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 340.667 chr1 55777256 55777624 + 2 NA Intergenic Intergenic 167523 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 332.334-4 chr8 123621707 123622017 + 2 NA Intergenic Intergenic 31939 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 266-2 chr1 200756810 200757034 + 2 NA intron (NM_001297707, intron 1 of 17) intron (NM_001297707, intron 1 of 17) 17350 NM_001297707 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 252.333-2 chr1 72929388 72929534 + 2 NA Intergenic L2a|LINE|L2 -376709 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 323.667-8 chr6 35809843 35810033 + 2 NA intron (NM_182548, intron 1 of 3) L1MA5|LINE|L1 4586 NM_182548 222662 Hs.367947 NM_182548 ENSG00000197753 LHFPL5 DFNB67|TMHS|dJ510O8.8 LHFPL tetraspan subfamily member 5 protein-coding 442 chr1 182947429 182947698 + 2 NA intron (NM_030933, intron 2 of 9) Tigger2a|DNA|TcMar-Tigger 5603 NM_030933 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 308.5-13 chr6 90922318 90922488 + 2 NA Intergenic L1MEg|LINE|L1 -335331 NM_145331 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 345.833-3 chr8 135922121 135922614 + 2 NA Intergenic Intergenic 464911 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 213-5 chr11 16100235 16100432 + 2 NA intron (NM_033326, intron 7 of 15) intron (NM_033326, intron 7 of 15) -130712 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 362.333 chr10 82546951 82547304 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -314207 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 554.333 chr2 119988662 119989362 + 2 NA Intergenic L1MA9|LINE|L1 -24065 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 280.333-18 chr9 22696431 22696669 + 2 NA intron (NR_038977, intron 3 of 5) intron (NR_038977, intron 3 of 5) 50350 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 279.5-4 chr22 26420684 26420946 + 2 NA Intergenic L1ME3Cz|LINE|L1 -8445 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 136.5-11 chr10 20072941 20073040 + 2 NA intron (NM_032812, intron 4 of 13) intron (NM_032812, intron 4 of 13) 256558 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 430.333 chr2 55585283 55585628 + 2 NA intron (NM_020463, intron 6 of 14) intron (NM_020463, intron 6 of 14) 32167 NM_020463 57223 Hs.516182 NM_020463 ENSG00000275052 PPP4R3B FLFL2|PP4R3B|PSY2|SMEK2|smk1 protein phosphatase 4 regulatory subunit 3B protein-coding 143-84 chr9 29143530 29143607 + 2 NA intron (NM_001354574, intron 1 of 5) L1M4|LINE|L1 68731 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 341 chr12 10386469 10386733 + 2 NA intron (NR_120430, intron 3 of 3) intron (NR_120430, intron 3 of 3) 3440 NM_007360 22914 Hs.387787 NM_007360 ENSG00000213809 KLRK1 CD314|D12S2489E|KLR|NKG2-D|NKG2D killer cell lectin like receptor K1 protein-coding 465.667-2 chr8 131170035 131170393 + 2 NA Intergenic AluJr4|SINE|Alu -129305 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 319.333-5 chr11 83817485 83817760 + 2 NA intron (NM_001142699, intron 17 of 27) AluJr4|SINE|Alu -135197 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 419-3 chr7 4519432 4519782 + 2 NA Intergenic Intergenic -162688 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 202.5-16 chr2 211745290 211745417 + 2 NA intron (NM_001042599, intron 5 of 26) intron (NM_001042599, intron 5 of 26) 681007 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 434.5-2 chr14 71223670 71224075 + 2 NA Intergenic Intergenic -96604 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 195.667-33 chr5 93119316 93119500 + 2 NA Intergenic Intergenic 451935 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 286-12 chr6 64386769 64387059 + 2 NA intron (NM_001292009, intron 29 of 43) intron (NM_001292009, intron 29 of 43) 580078 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 491 chr9 24276870 24277195 + 2 NA Intergenic MIRb|SINE|MIR 268644 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 382-2 chr2 133217992 133218304 + 2 NA intron (NM_207481, intron 4 of 17) Charlie1b|DNA|hAT-Charlie -48047 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 314.5-5 chr10 81050391 81050653 + 2 NA Intergenic L1MEc|LINE|L1 400725 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 314-9 chr5 26075368 26075646 + 2 NA Intergenic Intergenic 884554 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 423.834-4 chrX 42917035 42917452 + 2 NA Intergenic Intergenic -139080 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 221.833-15 chr22 25684030 25684213 + 2 NA intron (NM_001362778, intron 8 of 19) L1ME3A|LINE|L1 -58067 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 317-4 chr2 234180736 234180966 + 2 NA Intergenic L2c|LINE|L2 130149 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 366-2 chr2 24296956 24297309 + 2 NA intron (NM_001348182, intron 13 of 38) intron (NM_001348182, intron 13 of 38) 63404 NM_147152 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 229-23 chr2 227141469 227141616 + 2 NA intron (NM_000092, intron 3 of 47) intron (NM_000092, intron 3 of 47) 23017 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 461-3 chr5 28300509 28301327 + 2 NA Intergenic Intergenic -13253 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 318.834-2 chr12 123026144 123026434 + 2 NA intron (NM_020845, intron 2 of 24) MLT1D|LTR|ERVL-MaLR -15561 NR_036187 100422931 NR_036187 ENSG00000265526 MIR4304 - microRNA 4304 ncRNA 373.667 chr17 55696719 55696963 + 2 NA Intergenic Intergenic 26023 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 257.834 chr1 40102828 40103031 + 2 NA Intergenic HAL1b|LINE|L1 -5459 NM_000310 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 486.834 chr17 68404425 68404828 + 2 NA intron (NM_001352910, intron 11 of 12) L1M5|LINE|L1 -8997 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 330.666-2 chr12 26859703 26859924 + 2 NA Intergenic Intergenic -26619 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 432.667-2 chr3 171165840 171166320 + 2 NA intron (NM_001161563, intron 10 of 31) intron (NM_001161563, intron 10 of 31) -59321 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 300-9 chr6 61241943 61242208 + 2 NA Intergenic L1M5|LINE|L1 -332055 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 343.167 chr3 2176372 2176608 + 2 NA intron (NM_175607, intron 2 of 24) MER113A|DNA|hAT-Charlie -32249 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 583.501 chr18 3603193 3603775 + 2 NA promoter-TSS (NR_119377) promoter-TSS (NR_119377) -253 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 410.833-3 chr5 147830040 147830414 + 2 NA intron (NM_001354966, intron 2 of 4) intron (NM_001354966, intron 2 of 4) 9004 NM_001354966 6690 Hs.407856 NM_003122 ENSG00000164266 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 336.667-5 chr4 30704819 30705206 + 2 NA Intergenic MER58C|DNA|hAT-Charlie -15357 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 334.167-3 chr3 116892473 116892793 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -28798 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 393.667-2 chr4 45981930 45982283 + 2 NA Intergenic MER57A-int|LTR|ERV1 141948 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 525.333-2 chr18 69071089 69071402 + 2 NA Intergenic L1MEg|LINE|L1 273165 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 303-11 chr9 30823766 30823966 + 2 NA Intergenic Intergenic -415412 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 162.667-84 chr8 98747210 98747325 + 2 NA intron (NM_006281, intron 4 of 10) L1MEg|LINE|L1 78404 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 305.5-4 chr2 227931486 227931951 + 2 NA Intergenic Intergenic 60087 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 452.5 chr1 182863495 182863954 + 2 NA intron (NM_001357, intron 12 of 27) intron (NM_001357, intron 12 of 27) -24133 NR_148933 647070 Hs.191518 NR_148933 LOC647070 - uncharacterized LOC647070 ncRNA 497 chr3 54747662 54748064 + 2 NA intron (NM_018398, intron 11 of 37) L2a|LINE|L2 -108006 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 306.5-3 chr12 20620352 20620568 + 2 NA intron (NM_000921, intron 4 of 15) LTR80B|LTR|ERVL 48596 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 324.667-4 chr18 1430404 1430927 + 2 NA Intergenic Intergenic -71036 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 285.667-4 chr3 167159125 167159564 + 2 NA Intergenic Intergenic 220939 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 305-3 chr2 179218146 179218435 + 2 NA intron (NM_178123, intron 1 of 17) intron (NM_178123, intron 1 of 17) 46542 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 373 chr1 75324077 75324494 + 2 NA intron (NM_001320287, intron 4 of 24) intron (NM_001320287, intron 4 of 24) 189897 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 330-8 chr5 53042212 53042447 + 2 NA intron (NR_073106, intron 3 of 29) intron (NR_073106, intron 3 of 29) 52977 NR_073103 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 570.5 chr12 86486978 86487393 + 2 NA intron (NM_013244, intron 1 of 6) intron (NM_013244, intron 1 of 6) -229886 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 391.334 chr14 37490965 37491416 + 2 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 104059 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 276-12 chr4 60335808 60335992 + 2 NA Intergenic Intergenic -586719 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 323.501 chr1 105359980 105360215 + 2 NA Intergenic Intergenic 258838 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 218.333-25 chr3 28176580 28176754 + 2 NA Intergenic L1M5|LINE|L1 -64952 NR_138585 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 229.5-3 chr1 184450641 184450872 + 2 NA intron (NM_030806, intron 1 of 5) intron (NM_030806, intron 1 of 5) 63727 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 278-9 chr3 36729947 36730174 + 2 NA intron (NM_033403, intron 2 of 4) AluJb|SINE|Alu 9801 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 448.333-2 chr14 60581588 60582145 + 2 NA Intergenic L1MEd|LINE|L1 -57350 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 395.834-2 chr14 60469235 60469574 + 2 NA intron (NM_174978, intron 8 of 17) intron (NM_174978, intron 8 of 17) 16659 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 309.333-2 chr12 2370085 2370267 + 2 NA intron (NM_199460, intron 3 of 49).2 L1ME4a|LINE|L1 100400 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 446.666 chr9 120977590 120978107 + 2 NA intron (NM_001735, intron 28 of 40) MIRc|SINE|MIR -25017 NR_148450 110599590 NR_148450 C5-OT1 C5T1LNCRNA C5 3' UTR overlapping transcript 1 ncRNA 267.5-14 chr8 17668566 17668754 + 2 NA intron (NR_156437, intron 7 of 13) intron (NR_156437, intron 7 of 13) 7841 NM_001330470 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 600-2 chr3 114940471 114941083 + 2 NA intron (NM_001348805, intron 3 of 10) intron (NM_001348805, intron 3 of 10) -40152 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 155.334-5 chr4 35781316 35781441 + 2 NA Intergenic Intergenic 462561 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 435.5 chr4 60922538 60923017 + 2 NA TTS (NR_039652) TTS (NR_039652) 158 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 425.333-4 chr4 161900712 161901003 + 2 NA intron (NM_001128428, intron 4 of 14) intron (NM_001128428, intron 4 of 14) -121876 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 493.001 chr2 25660379 25660835 + 2 NA intron (NM_033147, intron 1 of 19) intron (NM_033147, intron 1 of 19) -10385 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 312.667-8 chr6 53653200 53653412 + 2 NA intron (NM_001003760, intron 2 of 2) intron (NM_001003760, intron 2 of 2) 12450 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 319.333 chr1 229079268 229079541 + 2 NA Intergenic Intergenic 95397 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 454.834 chr2 218686625 218686889 + 2 NA intron (NM_001369423, intron 11 of 26) L1MB7|LINE|L1 14439 NM_001369423 27148 Hs.471404 NM_015690 ENSG00000163482 STK36 FU serine/threonine kinase 36 protein-coding 313.667-6 chr14 54115525 54115895 + 2 NA Intergenic MIRb|SINE|MIR -158819 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 228.334-4 chr2 70542274 70542455 + 2 NA intron (NM_003236, intron 1 of 5) intron (NM_003236, intron 1 of 5) 11082 NM_001308159 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 430 chr2 71386998 71387333 + 2 NA intron (NM_001252613, intron 10 of 27) L1M5|LINE|L1 55383 NM_014497 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 162-71 chr8 107490929 107491032 + 2 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 6938 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 330-4 chr14 57308298 57308647 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 39501 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 310.666 chr14 67545193 67545502 + 2 NA intron (NM_020715, intron 2 of 28) MLT1J|LTR|ERVL-MaLR -11497 NM_001348546 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 436.167 chr14 42591353 42591720 + 2 NA Intergenic Intergenic 984680 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 420-3 chr2 124481099 124481604 + 2 NA intron (NM_001367498, intron 7 of 23) intron (NM_001367498, intron 7 of 23) 456064 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 481 chr3 94101126 94101494 + 2 NA intron (NM_022072, intron 5 of 5) intron (NM_022072, intron 5 of 5) 38249 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 248.667-3 chr1 218060767 218060927 + 2 NA Intergenic Intergenic 17342 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 290.667-4 chr14 87486881 87487086 + 2 NA Intergenic Intergenic 168311 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 331.667 chr14 47710618 47710851 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -35780 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 326.667-3 chr4 65600474 65600708 + 2 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 68897 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 174.833-46 chr7 11402486 11402634 + 2 NA intron (NM_015204, intron 21 of 26) L1ME3A|LINE|L1 428688 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 288.333 chr1 211096766 211096998 + 2 NA intron (NM_002238, intron 3 of 10) intron (NM_002238, intron 3 of 10) 36492 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 434.333 chr16 62088335 62088664 + 2 NA Intergenic Intergenic -52061 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 293.5-3 chr12 10782817 10783004 + 2 NA Intergenic AluJr|SINE|Alu 19717 NM_023919 50837 Hs.533754 NM_023919 ENSG00000121377 TAS2R7 T2R7|TRB4 taste 2 receptor member 7 protein-coding 185-52 chr8 110936247 110936355 + 2 NA Intergenic Intergenic 91132 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 367.333-2 chr2 84735696 84735914 + 2 NA intron (NM_001370, intron 62 of 76) L1PA17|LINE|L1 145279 NM_001307978 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 408.833 chr3 151916338 151916652 + 2 NA intron (NR_110203, intron 1 of 2) L2b|LINE|L2 11680 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 188-11 chr10 91187914 91188045 + 2 NA intron (NM_001257101, intron 1 of 9) L1PA3|LINE|L1 24967 NM_001257101 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 331-4 chr18 60772692 60772871 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -400006 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 285.333-4 chr10 61618928 61619107 + 2 NA Intergenic Intergenic -43912 NM_001366905 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 548.001 chr9 80711230 80711780 + 2 NA Intergenic Intergenic 736482 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 291.5-17 chr8 85947310 85947481 + 2 NA Intergenic L1ME1|LINE|L1 -119453 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 377-4 chr21 29344971 29345332 + 2 NA 3' UTR (NM_001186, exon 5 of 5) 3' UTR (NM_001186, exon 5 of 5) -27350 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 494.667 chrX 151501437 151501776 + 2 NA Intergenic L1ME1|LINE|L1 -13945 NR_135614 105377213 Hs.147790 NR_135614 ENSG00000214915 LOC105377213 - uncharacterized LOC105377213 ncRNA 305.667-8 chr2 161071616 161071882 + 2 NA Intergenic Intergenic -65206 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 378-4 chr6 37313415 37313777 + 2 NA intron (NR_130108, intron 9 of 12) intron (NR_130108, intron 9 of 12) -40387 NM_003958 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 371.333-2 chr3 40549117 40549342 + 2 NA Intergenic AluJr|SINE|Alu 24269 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 307.167 chr3 95141902 95142347 + 2 NA Intergenic Intergenic 203861 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 322.5-4 chr2 41519561 41519877 + 2 NA Intergenic Intergenic -357836 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 327-3 chr2 182840712 182840937 + 2 NA intron (NM_001463, intron 3 of 5) intron (NM_001463, intron 3 of 5) 25813 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 546.834 chr8 78099468 78099959 + 2 NA Intergenic HAL1ME|LINE|L1 -416627 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 403.167-2 chr9 31546151 31546445 + 2 NA Intergenic L1ME2|LINE|L1 -164808 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 407.5-2 chr3 32646147 32646427 + 2 NA Intergenic MER34C_|LTR|ERV1 -38901 NM_001256741 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 285-4 chr4 64247332 64247513 + 2 NA Intergenic Intergenic 162028 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 262.666 chr15 52324759 52325114 + 2 NA intron (NM_001142495, intron 34 of 39) intron (NM_001142495, intron 34 of 39) -29132 NM_018728 55930 Hs.487036 NM_018728 ENSG00000128833 MYO5C - myosin VC protein-coding 383.5-2 chr5 157572854 157573323 + 2 NA intron (NM_033274, intron 1 of 22) intron (NM_033274, intron 1 of 22) 2687 NM_033274 8728 Hs.483944 NM_023038 ENSG00000135074 ADAM19 FKSG34|MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 449.5 chr12 70371650 70371954 + 2 NA intron (NM_014505, intron 1 of 2) L2a|LINE|L2 5512 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 398-7 chr8 120137157 120137373 + 2 NA intron (NM_021110, intron 1 of 47) L1MEb|LINE|L1 12163 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 282.667-2 chr10 48409815 48410058 + 2 NA non-coding (NR_136585, exon 4 of 12) non-coding (NR_136585, exon 4 of 12) 8324 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 215.5-26 chr22 27152400 27152538 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -35047 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 218-41 chr6 66771073 66771233 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie 983274 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 452.5-2 chr12 18528615 18529122 + 2 NA intron (NM_001288774, intron 24 of 32) intron (NM_001288774, intron 24 of 32) 208641 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 235.5-8 chr12 14213913 14214074 + 2 NA Intergenic Intergenic -151639 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 259-6 chr14 88040329 88040476 + 2 NA intron (NR_046094, intron 2 of 3) L2|LINE|L2 -14090 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 348-4 chr17 3619828 3620200 + 2 NA intron (NM_013276, intron 5 of 6) MER58B|DNA|hAT-Charlie -10603 NM_080704 7442 Hs.579217 NM_018727 ENSG00000196689 TRPV1 VR1 transient receptor potential cation channel subfamily V member 1 protein-coding 769.833 chr14 50477524 50478542 + 2 NA intron (NM_198794, intron 6 of 31) L1ME4a|LINE|L1 54536 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 261-20 chr5 76384771 76385002 + 2 NA Intergenic MIRb|SINE|MIR -18399 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 497.667 chr15 57100553 57100967 + 2 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -118670 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 282.667-11 chr4 36340425 36340647 + 2 NA intron (NM_001170700, intron 9 of 9) intron (NM_001170700, intron 9 of 9) 58920 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 252.666-2 chr14 59985036 59985231 + 2 NA exon (NM_001355272, exon 17 of 33) exon (NM_001355272, exon 17 of 33) 65420 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 388 chr16 48743013 48743373 + 2 NA Intergenic Intergenic -133013 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 360.5-10 chr7 119203221 119203625 + 2 NA Intergenic Intergenic 703952 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 232.167-18 chr3 36514535 36514751 + 2 NA intron (NM_001292049, intron 6 of 8) L2a|LINE|L2 134156 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 371.333-7 chr8 88832154 88832519 + 2 NA Intergenic Intergenic -504853 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 346.5-6 chr6 141889627 141890031 + 2 NA Intergenic L1PA15|LINE|L1 198970 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 335-2 chr17 12075922 12076157 + 2 NA intron (NM_001281435, intron 3 of 11) MamRep1879|DNA|hAT-Tip100? -5860 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 208-9 chr14 35739072 35739258 + 2 NA intron (NM_014990, intron 11 of 40) intron (NM_014990, intron 11 of 40) 23766 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 302.333-5 chr2 219097882 219098053 + 2 NA intron (NM_024782, intron 5 of 7) L2-3_Crp|LINE|L2 -37046 NM_002181 3549 Hs.654504 NM_002181 ENSG00000163501 IHH BDA1|HHG2 Indian hedgehog signaling molecule protein-coding 238-27 chr6 151549937 151550136 + 2 NA intron (NM_025059, intron 5 of 10) intron (NM_025059, intron 5 of 10) 56019 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 288-6 chr19 41738610 41738785 + 2 NA Intergenic LTR49-int|LTR|ERV1 -16833 NM_002483 4680 Hs.466814 NM_002483 ENSG00000086548 CEACAM6 CD66c|CEAL|NCA carcinoembryonic antigen related cell adhesion molecule 6 protein-coding 232-27 chr6 165495083 165495254 + 2 NA intron (NM_006661, intron 3 of 22) intron (NM_006661, intron 3 of 22) 166932 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 426.501 chr10 54187418 54188082 + 2 NA intron (NM_001142770, intron 11 of 34) intron (NM_001142770, intron 11 of 34) -298480 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 317.501 chr1 65503900 65504189 + 2 NA intron (NM_001003679, intron 2 of 19) L1MC3|LINE|L1 -21607 NM_001198687 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 612.167 chr10 77119716 77120296 + 2 NA intron (NM_001271519, intron 6 of 28) intron (NM_001271519, intron 6 of 28) -20825 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 302.167-12 chr8 53829129 53829348 + 2 NA intron (NM_213620, intron 4 of 13) intron (NM_213620, intron 4 of 13) 13804 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 341.833 chr5 112733079 112733490 + 2 NA intron (NM_001354902, intron 1 of 14) MLT1D|LTR|ERVL-MaLR -4601 NM_001354904 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 222.667-38 chr8 137680682 137680862 + 2 NA Intergenic Intergenic -267184 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 281.167-7 chr5 64112305 64112575 + 2 NA Intergenic L1PREC2|LINE|L1 -53403 NM_178532 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 290.166-2 chr14 46032811 46033062 + 2 NA Intergenic L1MB1|LINE|L1 -31223 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 401.667 chr4 106030585 106030864 + 2 NA Intergenic L1PB1|LINE|L1 -8246 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 435-2 chr10 20552017 20552345 + 2 NA TTS (NR_039822) TTS (NR_039822) 211 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 287.167-2 chr11 102988062 102988375 + 2 NA Intergenic L1MB5|LINE|L1 -32486 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 182-32 chr20 60403803 60403905 + 2 NA Intergenic Intergenic 69122 NR_109903 101928048 Hs.572803 NR_109903 LOC101928048 - uncharacterized LOC101928048 ncRNA 389 chr15 69363166 69363446 + 2 NA intron (NM_001104554, intron 3 of 8) intron (NM_001104554, intron 3 of 8) 48903 NM_001104554 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 192.667-40 chr4 124176682 124176806 + 2 NA Intergenic L2a|LINE|L2 381690 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 299-5 chr12 68265671 68265887 + 2 NA Intergenic Intergenic -12175 NM_020525 50616 Hs.287369 NM_020525 ENSG00000127318 IL22 IL-21|IL-22|IL-D110|IL-TIF|ILTIF|TIFIL-23|TIFa|zcyto18 interleukin 22 protein-coding 279.833-8 chr7 98164464 98164670 + 2 NA intron (NM_014916, intron 6 of 13) intron (NM_014916, intron 6 of 13) -47687 NM_177455 168620 Hs.511979 NM_177455 ENSG00000180535 BHLHA15 BHLHB8|MIST1 basic helix-loop-helix family member a15 protein-coding 425.333-5 chr7 18936358 18936649 + 2 NA intron (NM_058176, intron 22 of 22) MIRb|SINE|MIR 181133 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 279.167-9 chr2 126810539 126810780 + 2 NA Intergenic L1MB4|LINE|L1 -88231 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 274-10 chr8 89767229 89767406 + 2 NA intron (NM_003821, intron 3 of 10) intron (NM_003821, intron 3 of 10) 9501 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 484-2 chr5 60148782 60149134 + 2 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) 223705 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 150.5-81 chr8 119320779 119320891 + 1.83333 NA Intergenic MER4D|LTR|ERV1 -4336 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 485.999 chr13 112595695 112596214 + 1.83333 NA Intergenic L1MDa|LINE|L1 -7769 NM_001286279 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 281-8 chr18 21010797 21011056 + 1.83333 NA intron (NM_005406, intron 13 of 32) L1MD2|LINE|L1 100887 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 537.666 chr8 124846170 124846654 + 1.83333 NA Intergenic AluSg|SINE|Alu -24354 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 419.166 chr6 120880054 120880456 + 1.83333 NA Intergenic L1MCb|LINE|L1 454225 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 207.333-45 chr6 48967724 48968002 + 1.83333 NA Intergenic Intergenic 495390 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 202-28 chr4 5979691 5979825 + 1.83333 NA intron (NM_001364689, intron 7 of 11) L1MD2|LINE|L1 38788 NM_001364690 389197 Hs.479065 NM_207405 ENSG00000181215 C4orf50 - chromosome 4 open reading frame 50 protein-coding 485.5 chr10 91495829 91496374 + 1.83333 NA intron (NM_182765, intron 14 of 20) intron (NM_182765, intron 14 of 20) 85816 NR_145526 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 445-2 chr4 69969720 69970175 + 1.83333 NA Intergenic Intergenic -8936 NM_001302770 1447 Hs.2242 NM_001891 ENSG00000135222 CSN2 CASB casein beta protein-coding 271-15 chr7 50420406 50420724 + 1.83333 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 29785 NM_001287494 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 190.167-15 chr14 83348770 83348943 + 1.83333 NA Intergenic Intergenic 706224 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 231.667-2 chr10 33601509 33601674 + 1.83333 NA Intergenic L1MA10|LINE|L1 171089 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 195.167-33 chr6 120824987 120825176 + 1.83333 NA Intergenic Intergenic 509399 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 277.166 chr15 87305575 87305742 + 1.83333 NA Intergenic Intergenic -271271 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 157-34 chr17 59625407 59625516 + 1.83333 NA intron (NM_001288653, intron 1 of 31) Charlie5|DNA|hAT-Charlie 5566 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 506.167 chr8 132668778 132669174 + 1.83333 NA intron (NR_135907, intron 1 of 10) LTR16A|LTR|ERVL 6569 NM_001321965 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 283.833-6 chr4 139333269 139333530 + 1.83333 NA intron (NM_057175, intron 1 of 19) HAL1|LINE|L1 -30848 NM_001184990 4717 Hs.84549 NM_002494 ENSG00000109390 NDUFC1 KFYI NADH:ubiquinone oxidoreductase subunit C1 protein-coding 196.833-6 chr1 240011079 240011319 + 1.83333 NA intron (NR_036695, intron 1 of 1) L2b|LINE|L2 3675 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 319.666-2 chr4 21873412 21873644 + 1.83333 NA intron (NM_147182, intron 1 of 8) L2b|LINE|L2 -20340 NR_002813 359822 Hs.354058 NR_002813 ENSG00000280650 KCNIP4-IT1 NCRNA00099|UM9(5)|UM9-5 KCNIP4 intronic transcript 1 ncRNA 232.333-3 chr1 108615268 108615416 + 1.83333 NA intron (NM_001010883, intron 4 of 10) intron (NM_001010883, intron 4 of 10) 45751 NM_001102592 113802 Hs.7962 NM_144584 ENSG00000162639 HENMT1 C1orf59|HEN1 HEN methyltransferase 1 protein-coding 395.333-2 chr13 92636374 92636840 + 1.83333 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 83348 NR_049776 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 286.499 chr11 66177464 66177663 + 1.83333 NA intron (NM_018026, intron 1 of 23) L1ME3F|LINE|L1 -79731 NM_001134775 64837 Hs.280792 NM_022822 ENSG00000174996 KLC2 - kinesin light chain 2 protein-coding 275.833-3 chr14 71951613 71951911 + 1.83333 NA intron (NM_001370288, intron 1 of 16) L1ME3A|LINE|L1 18235 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 435.667 chr8 93312855 93313148 + 1.83333 NA Intergenic MLT1F|LTR|ERVL-MaLR -146151 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 341.166-2 chr5 143706592 143706916 + 1.83333 NA Intergenic L2c|LINE|L2 26894 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 155-60 chr5 11727755 11727899 + 1.83333 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -138761 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 323.499 chr9 71951760 71952032 + 1.83333 NA intron (NM_001365057, intron 2 of 2) intron (NM_001365057, intron 2 of 2) 40257 NR_157408 138241 Hs.534190 NM_182505 ENSG00000155621 C9orf85 - chromosome 9 open reading frame 85 protein-coding 330.666 chr11 26923649 26923990 + 1.83333 NA Intergenic L1MA2|LINE|L1 -70293 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 395.833-3 chr17 65785423 65785842 + 1.83333 NA intron (NM_001353129, intron 21 of 26) L1MB7|LINE|L1 40819 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 291-6 chr17 67530481 67530780 + 1.83333 NA intron (NM_181671, intron 1 of 9) MLT1C|LTR|ERVL-MaLR -59045 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 346.166 chr2 89846349 89846596 + 1.83333 NA Intergenic Intergenic -208565 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 278-4 chr12 102912173 102912539 + 1.83333 NA intron (NM_000277, intron 2 of 12) L2c|LINE|L2 4888 NM_000277 5053 Hs.560019 NM_000277 ENSG00000171759 PAH PH|PKU|PKU1 phenylalanine hydroxylase protein-coding 222.5-15 chr21 20070332 20070500 + 1.83333 NA Intergenic Intergenic -170661 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 350.167 chr12 65382583 65382813 + 1.83333 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 103711 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 230.167-18 chr4 118808631 118808864 + 1.83333 NA intron (NM_014822, intron 6 of 22) intron (NM_014822, intron 6 of 22) 27379 NM_014822 9871 Hs.189641 NM_014822 ENSG00000150961 SEC24D CLCRP2 SEC24 homolog D, COPII coat complex component protein-coding 331-5 chr2 120147706 120148393 + 1.83333 NA intron (NM_001330310, intron 20 of 24) L1ME3Cz|LINE|L1 75351 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 241.5-15 chr2 188604950 188605212 + 1.83333 NA Intergenic L1MC3|LINE|L1 185042 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 424.166 chr6 46153000 46153274 + 1.83333 NA Intergenic L1MD1|LINE|L1 17843 NM_001290072 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 385-2 chr11 104391956 104392383 + 1.83333 NA Intergenic Intergenic 217133 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 262 chr1 68652770 68653033 + 1.83333 NA Intergenic Intergenic -155819 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 287.333-14 chr7 132978959 132979119 + 1.83333 NA intron (NM_001317177, intron 3 of 8) intron (NM_001317177, intron 3 of 8) 55876 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 255.499 chr11 34994678 34994837 + 1.83333 NA intron (NM_003477, intron 10 of 10) L1ME3|LINE|L1 52920 NR_039836 100616437 NR_039836 ENSG00000251862 MIR1343 - microRNA 1343 ncRNA 256.5-20 chr3 17192752 17193024 + 1.83333 NA intron (NM_014744, intron 18 of 21) intron (NM_014744, intron 18 of 21) 259692 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 390.166 chr17 74064498 74064925 + 1.83333 NA Intergenic MIRc|SINE|MIR -138967 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 390.5 chr1 32157200 32157607 + 1.83333 NA exon (NM_012316, exon 4 of 14) exon (NM_012316, exon 4 of 14) -22272 NM_175852 200081 Hs.17987 NM_175852 ENSG00000084652 TXLNA IL14|TXLN taxilin alpha protein-coding 343.5-4 chr2 21500315 21500618 + 1.83333 NA Intergenic L1ME1|LINE|L1 210186 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 380.167-6 chr8 109679723 109680282 + 1.83333 NA intron (NM_001099743, intron 1 of 7) intron (NM_001099743, intron 1 of 7) 964 NM_001099745 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 712.167 chr2 129577970 129578941 + 1.83333 NA Intergenic L1MC5|LINE|L1 299036 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 269-19 chr8 136744853 136745124 + 1.83333 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 214190 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 416-2 chr14 69846680 69846995 + 1.83333 NA Intergenic L1MC3|LINE|L1 -32579 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 239.5-20 chr5 55523279 55523535 + 1.83333 NA intron (NR_103485, intron 1 of 6) intron (NR_103485, intron 1 of 6) 11135 NR_001575 379013 Hs.745164 NR_001575 RNF138P1 - ring finger protein 138 pseudogene 1 pseudo 352.999-2 chr4 90244179 90244458 + 1.83333 NA intron (NM_207491, intron 1 of 7) intron (NM_207491, intron 1 of 7) 9287 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 305.5-6 chr3 88413751 88414034 + 1.83333 NA intron (NM_001368168, intron 2 of 2) L1M|LINE|L1 75436 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 183.166-2 chr5 23905016 23905161 + 1.83333 NA Intergenic ALR/Alpha|Satellite|centr -46260 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 373-3 chr7 25807878 25808229 + 1.83333 NA Intergenic Intergenic -17934 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 460.833 chr7 53174240 53174715 + 1.83333 NA Intergenic L1MB1|LINE|L1 138844 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 485.832 chr9 97644500 97644863 + 1.83333 NA intron (NM_001351507, intron 4 of 21) intron (NM_001351507, intron 4 of 21) 10860 NM_002486 4686 Hs.595669 NM_002486 ENSG00000136937 NCBP1 CBP80|NCBP|Sto1 nuclear cap binding protein subunit 1 protein-coding 220.5-9 chr11 66834476 66834673 + 1.83333 NA intron (NM_001302084, intron 12 of 14) intron (NM_001302084, intron 12 of 14) -8867 NM_005133 9986 Hs.654972 NM_005133 ENSG00000173653 RCE1 FACE2|RCE1A|RCE1B Ras converting CAAX endopeptidase 1 protein-coding 320.666-4 chr7 133756148 133756375 + 1.83333 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 68627 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 498.5 chr8 122784759 122785221 + 1.83333 NA intron (NM_001362797, intron 1 of 4) L2c|LINE|L2 3335 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 471.5-2 chr3 17488564 17489187 + 1.83333 NA intron (NM_001349081, intron 2 of 21) MER1B|DNA|hAT-Charlie 211145 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 294.5-3 chr12 15188382 15188557 + 1.83333 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 32948 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 248.167-8 chr11 102150245 102150505 + 1.83333 NA intron (NM_001130145, intron 2 of 8) intron (NM_001130145, intron 2 of 8) 37927 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 318.833-3 chr10 43572156 43572477 + 1.83333 NA intron (NM_001324353, intron 2 of 4) intron (NM_001324353, intron 2 of 4) 2300 NM_001099282 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 142.833-77 chr9 129533352 129533455 + 1.83333 NA Intergenic L1ME3A|LINE|L1 44743 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 MetaLnc9 long intergenic non-protein coding RNA 963 ncRNA 179.166 chr13 75125198 75125345 + 1.83333 NA Intergenic L1ME3A|LINE|L1 115110 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 496.833 chr4 72776385 72776913 + 1.83333 NA Intergenic L1PA14|LINE|L1 -207428 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 299.666-3 chr4 117110518 117110681 + 1.83333 NA Intergenic L1ME2|LINE|L1 -25023 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 266.333-21 chr9 28504959 28505124 + 1.83333 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 214264 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 454.499 chr16 77781193 77781673 + 1.83333 NA Intergenic Intergenic -7131 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 553.166 chr11 87968473 87969050 + 1.83333 NA Intergenic Charlie10b|DNA|hAT-Charlie 206682 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 350.833 chr11 77675785 77676078 + 1.83333 NA intron (NM_016578, intron 13 of 15) L2c|LINE|L2 -38125 NM_001311199 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 327.499 chr1 56240220 56240417 + 1.83333 NA Intergenic L1MC5|LINE|L1 -174645 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 319-9 chr8 59703819 59704189 + 1.83333 NA Intergenic L2c|LINE|L2 577396 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 420-4 chr9 124557806 124558217 + 1.83333 NA intron (NM_033334, intron 2 of 9) MIR|SINE|MIR -50612 NM_004959 2516 Hs.495108 NM_004959 ENSG00000136931 NR5A1 AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXX4|SRXY3|hSF-1 nuclear receptor subfamily 5 group A member 1 protein-coding 329.5-11 chr22 24721350 24721755 + 1.83333 NA intron (NM_001008496, intron 19 of 20) L1MEd|LINE|L1 -42949 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 311.833-3 chr4 72910348 72910700 + 1.83333 NA Intergenic Intergenic 159192 NM_001297732 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 357.333-4 chr2 52162295 52162636 + 1.83333 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -208183 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 392.833 chr1 225505350 225505722 + 1.83333 NA intron (NM_001008493, intron 11 of 14) intron (NM_001008493, intron 11 of 14) -76681 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 353.334-3 chr7 46297507 46297837 + 1.83333 NA Intergenic L1MDa|LINE|L1 -376400 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 316.5-2 chr16 13988246 13988471 + 1.83333 NA Intergenic MLT1I|LTR|ERVL-MaLR 27660 NR_110909 101927311 NR_110909 ENSG00000262097 LINC02185 - long intergenic non-protein coding RNA 2185 ncRNA 292.999 chr2 99351071 99351305 + 1.83333 NA intron (NM_015904, intron 1 of 23) L1ME1|LINE|L1 13799 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 170.333-69 chr8 34005346 34005481 + 1.83333 NA Intergenic THE1C|LTR|ERVL-MaLR -405307 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 579 chr15 76610961 76611532 + 1.83333 NA intron (NR_148227, intron 22 of 32) L1M3|LINE|L1 24599 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 487.166 chr3 684522 684935 + 1.83333 NA intron (NR_110118, intron 1 of 3) MIR|SINE|MIR 92623 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 220-28 chr9 96104367 96104544 + 1.83333 NA Intergenic L1M4b|LINE|L1 11956 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 587.666 chr16 72276705 72277196 + 1.83333 NA Intergenic Intergenic -104500 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 299.333-6 chr3 13020414 13020607 + 1.83333 NA intron (NM_001134382, intron 1 of 13) intron (NM_001134382, intron 1 of 13) -33409 NM_001330619 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 483.167 chr4 102431686 102432281 + 1.83333 NA intron (NR_136202, intron 2 of 4) intron (NR_136202, intron 2 of 4) -69376 NM_001165412 4790 Hs.618430 NM_003998 ENSG00000109320 NFKB1 CVID12|EBP-1|KBF1|NF-kB1|NF-kappa-B1|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor kappa B subunit 1 protein-coding 343.5-2 chr13 100557567 100557777 + 1.83333 NA intron (NM_001195087, intron 2 of 2) L1ME1|LINE|L1 -23870 NM_033110 87769 Hs.350868 NM_033110 ENSG00000134864 GGACT A2LD1 gamma-glutamylamine cyclotransferase protein-coding 273-2 chr10 57675373 57675574 + 1.83333 NA Intergenic Intergenic -370914 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 256.166-3 chr8 48291875 48292091 + 1.83333 NA Intergenic L1MD1|LINE|L1 -259584 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 264.167-22 chr8 103503796 103504325 + 1.83333 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -2150 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 317.667-2 chr14 76166900 76167106 + 1.83333 NA 3' UTR (NM_001322031, exon 3 of 3) 3' UTR (NM_001322031, exon 3 of 3) 12649 NR_110314 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 199.5-38 chr6 128738736 128738955 + 1.83333 NA Intergenic MER44A|DNA|TcMar-Tigger -144293 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 155.333-4 chr1 96943759 96943855 + 1.83333 NA Intergenic MIR|SINE|MIR -152116 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 256.5-33 chr7 42338824 42339259 + 1.83333 NA Intergenic Intergenic -101832 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 313.166-2 chr8 81360563 81360786 + 1.83333 NA Intergenic HAL1|LINE|L1 80138 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 272.166-4 chr4 59066957 59067259 + 1.83333 NA Intergenic Intergenic 53535 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 353.333 chr1 188350106 188350549 + 1.83333 NA Intergenic LTR50|LTR|ERVL 906699 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 372.666 chr10 75513028 75513425 + 1.83333 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) -39232 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 196.5-42 chrX 75731682 75731820 + 1.83333 NA Intergenic L1PREC2|LINE|L1 11328 NR_030737 286495 Hs.567832 NR_030737 TTC3P1 RNF105L|TTC3L tetratricopeptide repeat domain 3 pseudogene 1 pseudo 329.333-3 chr18 40294372 40294579 + 1.83333 NA Intergenic Intergenic 228189 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 251-8 chr13 65480721 65481006 + 1.83333 NA Intergenic Intergenic -385184 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 443.166 chr17 63226654 63227123 + 1.83333 NA intron (NM_025185, intron 6 of 25) L1PA10|LINE|L1 213379 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 352.667 chr1 190164261 190164626 + 1.83333 NA intron (NM_199051, intron 6 of 7) intron (NM_199051, intron 6 of 7) 311567 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 268.833-10 chr3 2505137 2505368 + 1.83333 NA intron (NM_175607, intron 3 of 24) L1MC4|LINE|L1 266423 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 286.333-7 chr3 110624275 110624440 + 1.83333 NA Intergenic Intergenic 445602 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 191-13 chr14 66270784 66270906 + 1.83333 NA Intergenic MIRb|SINE|MIR -215526 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 364.166-3 chr5 78839215 78839600 + 1.83333 NA exon (NM_000046, exon 6 of 8) exon (NM_000046, exon 6 of 8) 145903 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 206.667-9 chr10 77020712 77020858 + 1.83333 NA intron (NM_001271519, intron 16 of 28) intron (NM_001271519, intron 16 of 28) -120046 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 428.499 chr7 13660763 13661080 + 1.83333 NA Intergenic L1MB3|LINE|L1 325593 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 343.666-2 chr4 32009061 32009472 + 1.83333 NA intron (NR_134682, intron 2 of 3) intron (NR_134682, intron 2 of 3) 11887 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 215.333-51 chr8 80199603 80199806 + 1.83333 NA Intergenic AluJb|SINE|Alu -28140 NR_105034 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 271.499 chr8 117593747 117593924 + 1.83333 NA Intergenic Intergenic 73122 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 389.666-3 chr6 51951180 51951409 + 1.83333 NA intron (NM_138694, intron 36 of 66) intron (NM_138694, intron 36 of 66) 136319 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 388-3 chr20 12793679 12794008 + 1.83333 NA Intergenic L1ME3A|LINE|L1 143120 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 232.833-14 chr3 127642887 127643029 + 1.83333 NA intron (NM_015720, intron 2 of 7) MIRb|SINE|MIR 13773 NM_015720 50512 Hs.591290 NM_015720 ENSG00000114631 PODXL2 EG|PODLX2 podocalyxin like 2 protein-coding 475 chr11 40928728 40929025 + 1.83333 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) 530760 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 248.833-3 chr11 84095213 84095475 + 1.83333 NA intron (NM_001142699, intron 10 of 27) MIRb|SINE|MIR 177936 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 208-10 chr14 44358999 44359206 + 1.83333 NA Intergenic L1M5|LINE|L1 148181 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 313.5-5 chr3 148605430 148605677 + 1.83333 NA Intergenic Intergenic -92318 NM_000685 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 321.999-2 chr5 107075275 107075596 + 1.83333 NA Intergenic Intergenic -64421 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 181-9 chr10 79039713 79039946 + 1.83333 NA intron (NR_015429, intron 3 of 7) L1MEc|LINE|L1 27619 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 491.333 chr8 119720546 119720966 + 1.83333 NA Intergenic AluSx1|SINE|Alu -47366 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 622.665 chr4 44854345 44854745 + 1.83333 NA Intergenic L1MA4|LINE|L1 -127911 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 363.667-3 chr16 14025885 14026458 + 1.83333 NA Intergenic L1MD2|LINE|L1 -5094 NR_110915 101927348 Hs.569621 NR_110915 ENSG00000261856 LINC02186 - long intergenic non-protein coding RNA 2186 ncRNA 293.833 chr10 84626293 84626500 + 1.83333 NA Intergenic MIRb|SINE|MIR 201227 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 284.334-6 chr8 90771488 90771817 + 1.83333 NA Intergenic LTR16A1|LTR|ERVL -20123 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 221.667-25 chr4 98039793 98040006 + 1.83333 NA intron (NM_174952, intron 5 of 10) L1M3de|LINE|L1 103577 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 325.666 chr2 173989941 173990265 + 1.83333 NA Intergenic Intergenic -24401 NM_003111 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 258.167-11 chr3 179799471 179799740 + 1.83333 NA non-coding (NR_146167, exon 14 of 14) non-coding (NR_146167, exon 14 of 14) -98589 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 257.166-2 chr16 76437970 76438115 + 1.83333 NA intron (NR_136213, intron 4 of 23) L1MEb|LINE|L1 128190 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 458.333-2 chr3 73686575 73687025 + 1.83333 NA Intergenic Intergenic -61859 NM_015009 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 291.5-16 chr6 135089740 135089932 + 1.83333 NA Intergenic Intergenic -35014 NM_001145207 10767 Hs.378532 NM_006620 ENSG00000112339 HBS1L EF-1a|ERFS|HBS1|HSPC276|eRF3c HBS1 like translational GTPase protein-coding 543.666 chr11 128494665 128495014 + 1.83333 NA intron (NM_001143820, intron 3 of 9) intron (NM_001143820, intron 3 of 9) 27471 NM_001330451 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 309-2 chr14 29270096 29270347 + 1.83333 NA Intergenic L1MC5|LINE|L1 -484434 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 340.333-14 chr7 21457911 21458183 + 1.83333 NA intron (NM_003112, intron 3 of 5) intron (NM_003112, intron 3 of 5) -13011 NR_031594 100302122 NR_031594 ENSG00000221783 MIR1183 MIRN1183|hsa-mir-1183 microRNA 1183 ncRNA 277-12 chr4 108494460 108494682 + 1.83333 NA Intergenic L1MA8|LINE|L1 -62662 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 200-64 chr7 77228033 77228155 + 1.83333 NA intron (NM_020879, intron 2 of 18) L1MC5a|LINE|L1 -28275 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 204.667-11 chr11 44142702 44142882 + 1.83333 NA intron (NM_207122, intron 7 of 13) intron (NM_207122, intron 7 of 13) 46595 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 152.667-74 chr6 57201976 57202142 + 1.83333 NA intron (NM_001278667, intron 3 of 6) intron (NM_001278667, intron 3 of 6) 19402 NM_183227 51715 Hs.555016 NM_016277 ENSG00000112210 RAB23 HSPC137 RAB23, member RAS oncogene family protein-coding 200.833-29 chr5 104906618 104906769 + 1.83333 NA Intergenic Intergenic -192781 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 345.167-7 chr5 121420699 121421001 + 1.83333 NA Intergenic L1MEg|LINE|L1 98300 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 292.5-12 chr3 125090911 125091265 + 1.83333 NA intron (NM_001195483, intron 11 of 12) L1MEc|LINE|L1 -35091 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 285.333-12 chr4 182453415 182453599 + 1.83333 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 210105 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 196-29 chr18 1093093 1093230 + 1.83333 NA Intergenic Intergenic -165168 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 244-12 chr4 22443909 22444123 + 1.83333 NA intron (NM_145290, intron 6 of 18) (TGTTTT)n|Simple_repeat|Simple_repeat -71296 NR_162129 113219450 NR_162129 MIR12115 - microRNA 12115 ncRNA 396.834 chr7 127006516 127006794 + 1.83333 NA intron (NM_001371085, intron 3 of 10) L2|LINE|L2 51529 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 351.5-4 chr17 7603666 7603955 + 1.83333 NA exon (NM_004860, exon 5 of 17) exon (NM_004860, exon 5 of 17) -10254 NM_001289114 6462 Hs.632235 NM_001040 ENSG00000129214 SHBG ABP|SBP|TEBG sex hormone binding globulin protein-coding 219.833-6 chr13 21118357 21118510 + 1.83333 NA Intergenic Intergenic -22081 NM_005870 10284 Hs.524899 NM_005870 ENSG00000150459 SAP18 2HOR0202|SAP18P Sin3A associated protein 18 protein-coding 341.166 chr3 165698785 165699008 + 1.83333 NA Intergenic AluY|SINE|Alu 138527 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 176.667-50 chr3 98579794 98579941 + 1.83333 NA 3' UTR (NM_000097, exon 7 of 7) 3' UTR (NM_000097, exon 7 of 7) 13744 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 361-4 chr2 62561919 62562338 + 1.83333 NA Intergenic L1MB7|LINE|L1 -55933 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 272.5-4 chr10 112074648 112074884 + 1.83333 NA Intergenic Intergenic 108999 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 234-4 chr1 212775221 212775403 + 1.83333 NA intron (NM_001042549, intron 4 of 6) L1MB8|LINE|L1 16465 NM_001297737 25936 Hs.497692 NM_015471 ENSG00000117697 NSL1 C1orf48|DC8|MIS14 NSL1 component of MIS12 kinetochore complex protein-coding 211-35 chr7 80744339 80744650 + 1.83333 NA 3' UTR (NM_001350120, exon 18 of 18) 3' UTR (NM_001350120, exon 18 of 18) 97841 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 435.167-2 chr18 61005243 61005689 + 1.83333 NA Intergenic Intergenic -327964 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 324.667-8 chr7 116271551 116271896 + 1.83333 NA Intergenic Intergenic 14941 NR_130923 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 435-4 chr2 114618853 114619222 + 1.83333 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 157460 NM_001321905 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 501.833 chrX 145404727 145405067 + 1.83333 NA Intergenic MER33|DNA|hAT-Charlie 157394 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 362-2 chr9 74557431 74557781 + 1.83333 NA intron (NM_006914, intron 1 of 9) intron (NM_006914, intron 1 of 9) -57928 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 233.666-5 chr2 184916012 184916433 + 1.83333 NA intron (NM_194250, intron 2 of 3) intron (NM_194250, intron 2 of 3) 250850 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 316.5 chr10 111056853 111057196 + 1.83333 NA Intergenic L1MA9|LINE|L1 -20005 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 356.667-4 chr2 182739898 182740237 + 1.83333 NA non-coding (NR_073365, exon 12 of 24) non-coding (NR_073365, exon 12 of 24) 23810 NM_018981 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 415.166 chr1 4921990 4922365 + 1.83333 NA Intergenic HERVK13-int|LTR|ERVK 267568 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 344.499 chr5 121056650 121056898 + 1.83333 NA Intergenic Intergenic -265776 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 428.667-2 chr20 36254006 36254409 + 1.83333 NA intron (NM_015511, intron 3 of 3) L1MB3|LINE|L1 17729 NM_001271874 25980 Hs.11314 NM_015511 ENSG00000131043 AAR2 C20orf4|CGI-23 AAR2 splicing factor protein-coding 425.333-6 chr9 20177797 20178064 + 1.83333 NA Intergenic MIRb|SINE|MIR 233308 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 391.667-5 chr9 27510221 27510713 + 1.83333 NA intron (NM_024761, intron 1 of 3) MER103C|DNA|hAT-Charlie -13847 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 343.5-5 chr20 7436188 7436518 + 1.83333 NA Intergenic Intergenic 64745 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 319.833-5 chr3 26692135 26692411 + 1.83333 NA intron (NM_001317810, intron 2 of 2) MIR|SINE|MIR -2284 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 273.333-3 chr14 38754228 38754561 + 1.83333 NA intron (NR_039982, intron 4 of 4) intron (NR_039982, intron 4 of 4) -128202 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 236-29 chr8 80829499 80829727 + 1.83333 NA intron (NM_001033723, intron 1 of 8) intron (NM_001033723, intron 1 of 8) 44855 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 271.833 chr1 31446984 31447474 + 1.83333 NA Intergenic Intergenic 33416 NM_018565 347735 Hs.270655 NM_018565 ENSG00000168528 SERINC2 FKSG84|PRO0899|TDE2|TDE2L serine incorporator 2 protein-coding 237.667-6 chr2 81688563 81688762 + 1.83333 NA Intergenic Intergenic -221716 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 454.834-2 chr3 110777266 110777751 + 1.83333 NA Intergenic Intergenic 292451 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 417.667 chr12 63372497 63372833 + 1.83333 NA Intergenic L1ME2|LINE|L1 -219855 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 298.833-7 chr6 99439921 99440245 + 1.83333 NA intron (NR_144344, intron 14 of 15) intron (NR_144344, intron 14 of 15) -14738 NM_001322410 25957 Hs.520287 NM_015491 ENSG00000132424 PNISR C6orf111|HSPC306|SFRS18|SRrp130|bA98I9.2 PNN interacting serine and arginine rich protein protein-coding 398.333 chr2 161456353 161456744 + 1.83333 NA Intergenic L1MEf|LINE|L1 40251 NM_006593 10716 Hs.210862 NM_006593 ENSG00000136535 TBR1 IDDAS|TBR-1|TES-56 T-box brain transcription factor 1 protein-coding 255.5-12 chr22 23029964 23030204 + 1.83333 NA Intergenic MER4B-int|LTR|ERV1 -40435 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 308.167-3 chr22 26016355 26016580 + 1.83333 NA intron (NM_001318245, intron 42 of 43) intron (NM_001318245, intron 42 of 43) -152995 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 375.667-4 chr18 70723596 70723984 + 1.83333 NA Intergenic Intergenic -72836 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 259.667-12 chr18 29939294 29939541 + 1.83333 NA Intergenic (ATATATC)n|Simple_repeat|Simple_repeat -359493 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 473 chr14 101145618 101145947 + 1.83333 NA Intergenic L1MB7|LINE|L1 24926 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 192.5-25 chr2 124916920 124917044 + 1.83333 NA 3' UTR (NM_001367498, exon 24 of 24) 3' UTR (NM_001367498, exon 24 of 24) 891695 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 136.333-18 chr11 104662604 104662710 + 1.83333 NA Intergenic Intergenic -53355 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 316.833-3 chr11 24151334 24151616 + 1.83333 NA Intergenic Intergenic -345578 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 270.5-3 chr11 24132675 24132903 + 1.83333 NA Intergenic L1PREC2|LINE|L1 -364264 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 362.167-4 chr2 18418482 18418869 + 1.83333 NA Intergenic L1M1|LINE|L1 141978 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 376.5-9 chr3 185147531 185147869 + 1.83333 NA intron (NM_001025266, intron 1 of 1) MIRb|SINE|MIR 5360 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 392.834-2 chr8 124740120 124740469 + 1.83333 NA Intergenic L3|LINE|CR1 -11787 NM_014751 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 272.333-8 chr14 61307706 61308266 + 1.83333 NA Intergenic AluJr4|SINE|Alu -13457 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 201.333-28 chr4 92833435 92833567 + 1.83333 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 529102 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 336-7 chr3 102991990 102992248 + 1.83333 NA Intergenic L1MEg|LINE|L1 531997 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 331.5-2 chr18 70757109 70757412 + 1.83333 NA Intergenic Intergenic -106306 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 423.333-3 chr7 108429023 108429356 + 1.83333 NA intron (NM_001371132, intron 1 of 30) AluSx1|SINE|Alu 27208 NM_001193582 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 272.167-6 chr11 112278689 112278973 + 1.83333 NA intron (NR_126004, intron 1 of 3) intron (NR_126004, intron 1 of 3) 8082 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 339.499 chr9 30794155 30794391 + 1.83333 NA Intergenic Intergenic -385819 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 230.5 chr1 116802992 116803179 + 1.83333 NA Intergenic L1MEd|LINE|L1 48655 NM_001328609 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 313.833-3 chr15 95413418 95413754 + 1.83333 NA Intergenic Intergenic -19507 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 177.333-43 chr3 87221109 87221256 + 1.83333 NA Intergenic Intergenic 5095 NR_039958 100616161 NR_039958 ENSG00000264119 MIR4795 - microRNA 4795 ncRNA 294.166-3 chr6 62734049 62734314 + 1.83333 NA Intergenic Intergenic -447954 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 426.5 chr7 130848555 130848936 + 1.83333 NA Intergenic Intergenic 28065 NR_029503 407021 NR_029503 ENSG00000284032 MIR29A MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a microRNA 29a ncRNA 378.833-6 chr7 49291194 49291581 + 1.83333 NA Intergenic MIRb|SINE|MIR 366840 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 402.666 chr16 76235997 76236235 + 1.83333 NA Intergenic Intergenic -41285 NM_001322179 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 259.667-4 chr11 78800115 78800348 + 1.83333 NA intron (NM_001098816, intron 15 of 33) intron (NM_001098816, intron 15 of 33) -225367 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 151.333-92 chr8 133229193 133229434 + 1.83333 NA non-coding (NR_037944, exon 3 of 3) non-coding (NR_037944, exon 3 of 3) 38274 NM_001204869 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 279.834-3 chr14 51096794 51097066 + 1.83333 NA Intergenic Intergenic -1226 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 304-2 chr1 180672896 180673237 + 1.83333 NA intron (NR_137330, intron 1 of 12) intron (NR_137330, intron 1 of 12) 41044 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 305-5 chr6 169060817 169061060 + 1.83333 NA Intergenic L1M2|LINE|L1 -6848 NR_134619 102724357 Hs.129310 NR_134619 ENSG00000234519 LOC102724357 - uncharacterized LOC102724357 ncRNA 195.333-22 chr2 74666764 74666918 + 1.83333 NA intron (NM_001271662, intron 4 of 12) intron (NM_001271662, intron 4 of 12) 12594 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 293.833-3 chr12 78318045 78318267 + 1.83333 NA Intergenic L1MA6|LINE|L1 41590 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 323.999-2 chr2 37045999 37046202 + 1.83333 NA intron (NM_019024, intron 18 of 35) intron (NM_019024, intron 18 of 35) 38272 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 321.666-3 chrX 67480699 67480986 + 1.83333 NA Intergenic L1MB5|LINE|L1 -63179 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 494.666 chr6 109676190 109676530 + 1.83333 NA intron (NM_145025, intron 1 of 11) intron (NM_145025, intron 1 of 11) 14852 NM_145025 221264 Hs.205144 NM_145025 ENSG00000155085 AK9 AK 9|AKD1|AKD2|C6orf199|C6orf224|dJ70A9.1 adenylate kinase 9 protein-coding 254-31 chr8 57658541 57658958 + 1.83333 NA Intergenic L1MB7|LINE|L1 -87400 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 375.166-2 chr6 154379836 154380212 + 1.83333 NA Intergenic L1MC5a|LINE|L1 -23258 NM_001130700 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 344.5-5 chr8 134161694 134162058 + 1.83333 NA Intergenic MER31B|LTR|ERV1 275380 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 133.166 chr1 51444741 51444835 + 1.83333 NA intron (NM_001981, intron 11 of 24) intron (NM_001981, intron 11 of 24) -22693 NM_001159969 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 359.833-3 chr2 214786882 214787278 + 1.83333 NA intron (NR_104215, intron 1 of 8) (TTTTA)n|Simple_repeat|Simple_repeat 22603 NR_104215 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 287.167-7 chr2 29560275 29560536 + 1.83333 NA intron (NM_004304, intron 3 of 28) L1MB7|LINE|L1 -85028 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 384.333 chr2 101522913 101523476 + 1.83333 NA Intergenic Intergenic -48082 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 346.499 chr5 11612360 11612576 + 1.83333 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -23402 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 414.333 chr5 143441966 143442240 + 1.83333 NA Intergenic Intergenic -6591 NM_001018075 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 323.999 chr12 94775433 94775745 + 1.83333 NA Intergenic MIRb|SINE|MIR -58809 NR_030171 574449 NR_030171 ENSG00000283998 MIR492 MIRN492|hsa-mir-492 microRNA 492 ncRNA 281.167-3 chr13 67437309 67437530 + 1.83333 NA Intergenic Intergenic 65032 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 367.501 chr11 6161544 6162045 + 1.83333 NA Intergenic MER4A1|LTR|ERV1 8532 NM_001004052 255725 Hs.690457 NM_001004052 ENSG00000255307 OR52B2 OR11-70 olfactory receptor family 52 subfamily B member 2 protein-coding 157.166 chr8 137776109 137776230 + 1.83333 NA Intergenic Intergenic 307376 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 427.166 chr14 87222361 87222920 + 1.83333 NA Intergenic Intergenic 316862 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 214-25 chr20 53050688 53050864 + 1.83333 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) 78418 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 300.5-4 chr12 60405614 60405884 + 1.83333 NA Intergenic L1MEg|LINE|L1 716379 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 326.166-3 chr4 74580404 74580842 + 1.83333 NA Intergenic Intergenic 135487 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 236.167-17 chr6 161055202 161055426 + 1.83333 NA intron (NM_005922, intron 3 of 26) intron (NM_005922, intron 3 of 26) 63545 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 351.001 chr8 126260123 126260459 + 1.83333 NA Intergenic L1ME3D|LINE|L1 -65204 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 173.333-73 chr9 72643607 72643783 + 1.83333 NA intron (NM_138691, intron 4 of 23) L1ME1|LINE|L1 121894 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 320.833-7 chr8 106744876 106745359 + 1.83333 NA intron (NM_181354, intron 12 of 13) Tigger13a|DNA|TcMar-Tigger 19010 NM_001198534 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 228.167-30 chrX 108510958 108511124 + 1.83333 NA intron (NM_033380, intron 1 of 50) L1MC4|LINE|L1 71203 NM_033380 1287 Hs.369089 NM_000495 ENSG00000188153 COL4A5 ASLN|ATS|ATS1|CA54 collagen type IV alpha 5 chain protein-coding 303.333-9 chr3 37823998 37824193 + 1.83333 NA TTS (NM_002207) TTS (NM_002207) 37685 NR_110532 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 220.666-2 chr3 98008390 98008559 + 1.83333 NA intron (NM_001105580, intron 6 of 9) intron (NM_001105580, intron 6 of 9) 26830 NM_001105580 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 367.166 chr2 35527798 35528129 + 1.83333 NA Intergenic L1MA3|LINE|L1 56558 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 444.167-4 chr8 99434009 99434491 + 1.83333 NA intron (NM_017890, intron 22 of 61) intron (NM_017890, intron 22 of 61) 102480 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 295.667 chr14 55928195 55928504 + 1.83333 NA Intergenic Intergenic -131675 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 357.999 chr7 31257036 31257353 + 1.83333 NA Intergenic L2c|LINE|L2 83532 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 308.5 chr1 157332124 157332355 + 1.83333 NA Intergenic L2|LINE|L2 -193648 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 260.5-23 chr6 153802944 153803103 + 1.83333 NA Intergenic Intergenic -207473 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 382.333-4 chr2 127807556 127808042 + 1.83333 NA intron (NM_001006622, intron 1 of 5) L2c|LINE|L2 3372 NM_018383 55339 Hs.554831 NM_018383 ENSG00000136709 WDR33 NET14|WDC146 WD repeat domain 33 protein-coding 292.334-4 chr2 146096692 146096961 + 1.83333 NA Intergenic Intergenic -490231 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 359-4 chr7 115748822 115749189 + 1.83333 NA Intergenic Intergenic -167564 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 325.166 chr10 81658248 81658570 + 1.83333 NA Intergenic Intergenic -216785 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 257.833-3 chr15 65280498 65280660 + 1.83333 NA intron (NM_001316943, intron 1 of 5) intron (NM_001316943, intron 1 of 5) 5012 NR_145768 109617003 NR_145768 ENSG00000206903 SNORA24B - small nucleolar RNA, H/ACA box 24B snoRNA 209.333-27 chr3 2314862 2315008 + 1.83333 NA intron (NM_001206955, intron 1 of 23) intron (NM_001206955, intron 1 of 23) 76106 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 381.667 chr1 173008088 173008616 + 1.83333 NA Intergenic L1M1|LINE|L1 42611 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 397.167-5 chr3 104980481 104981072 + 1.83333 NA Intergenic L1MB7|LINE|L1 -385937 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 302-21 chr9 77551638 77551881 + 1.83333 NA intron (NM_004297, intron 1 of 6) intron (NM_004297, intron 1 of 6) 96563 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 419.666 chr10 34520688 34521147 + 1.83333 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 294379 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 286.167-11 chr5 58237609 58237828 + 1.83333 NA Intergenic Intergenic -115377 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 456.833-2 chr3 164594364 164594749 + 1.83333 NA Intergenic L2a|LINE|L2 236924 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 313.167 chr1 50478659 50479006 + 1.83333 NA intron (NM_007051, intron 17 of 18) intron (NM_007051, intron 17 of 18) -55389 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 356.166 chr19 6791044 6791303 + 1.83333 NA intron (NM_001258206, intron 1 of 25) intron (NM_001258206, intron 1 of 25) 18465 NM_001258206 7409 Hs.116237 NM_005428 ENSG00000141968 VAV1 VAV vav guanine nucleotide exchange factor 1 protein-coding 483.001 chr2 145099825 145100211 + 1.83333 NA Intergenic MIR|SINE|MIR 432051 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 243.833-18 chr8 36848172 36848435 + 1.83333 NA intron (NM_001031836, intron 18 of 26) L1MA7|LINE|L1 63929 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 441.666-2 chr2 183240164 183240590 + 1.83333 NA Intergenic MamRep1151|LTR?|LTR? 115934 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 329.833-2 chr10 77230513 77230961 + 1.83333 NA intron (NM_001322838, intron 3 of 29) intron (NM_001322838, intron 3 of 29) 89906 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 280.833 chr1 245297564 245297792 + 1.83333 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) -63161 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 440.333-2 chr20 50888401 50888827 + 1.83333 NA TTS (NM_181442) TTS (NM_181442) 21177 NM_001282532 23394 Hs.293736 NM_015339 ENSG00000101126 ADNP ADNP1|HVDAS|MRD28 activity dependent neuroprotector homeobox protein-coding 201.5-4 chr10 15200928 15201082 + 1.83333 NA Intergenic Intergenic -32312 NM_001308295 9397 Hs.60339 NM_004808 ENSG00000152465 NMT2 - N-myristoyltransferase 2 protein-coding 305.499 chrX 77253001 77253216 + 1.83333 NA Intergenic Intergenic -194281 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 284.333-11 chr9 75329011 75329182 + 1.83333 NA Intergenic L1PA17|LINE|L1 240582 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 350-10 chr9 26416220 26416473 + 1.83333 NA Intergenic L2c|LINE|L2 349671 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 342.5-4 chr11 88343668 88343884 + 1.83333 NA Intergenic L2a|LINE|L2 -6040 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 244.5-16 chr2 106875339 106875616 + 1.83333 NA intron (NM_032528, intron 1 of 5) AluSx|SINE|Alu 10551 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 245.666-3 chr5 161423964 161424206 + 1.83333 NA intron (NM_000813, intron 5 of 9) Tigger1|DNA|TcMar-Tigger 124039 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 287.5-5 chr14 64554342 64554536 + 1.83333 NA intron (NM_172365, intron 3 of 11) AluSp|SINE|Alu 4478 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 374.833 chr7 70129225 70129587 + 1.83333 NA intron (NM_015570, intron 3 of 18) MLT2B4|LTR|ERVL 530931 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 312.833-4 chr17 63341896 63342200 + 1.83333 NA intron (NM_025185, intron 11 of 25) L2c|LINE|L2 98219 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 488.999 chr13 51521435 51521708 + 1.83333 NA Intergenic Intergenic -31018 NR_039852 100616423 NR_039852 ENSG00000266611 MIR4703 - microRNA 4703 ncRNA 187.833-20 chr18 38208985 38209100 + 1.83333 NA Intergenic L1MEf|LINE|L1 551907 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 226.667-16 chr2 124707865 124708009 + 1.83333 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 682650 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 268.5-17 chr5 162074646 162074848 + 1.83333 NA intron (NM_198904, intron 1 of 9) intron (NM_198904, intron 1 of 9) 7105 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 269.999 chr5 38032402 38032578 + 1.83333 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 6793 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 218.333-12 chr12 83179627 83179784 + 1.83333 NA Intergenic Intergenic 492550 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 442.166 chr6 141270350 141270607 + 1.83333 NA Intergenic L1MEg|LINE|L1 586664 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 233.333-31 chr3 172014636 172014908 + 1.83333 NA Intergenic Intergenic -24806 NM_022763 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 240.833-4 chr1 209121740 209121934 + 1.83333 NA Intergenic L2c|LINE|L2 149383 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 329.5-8 chr18 65185517 65185987 + 1.83333 NA Intergenic Intergenic -564500 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 371.667 chr1 182911418 182911725 + 1.83333 NA intron (NM_030933, intron 6 of 9) L1MB5|LINE|L1 41595 NM_030933 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 326.167-5 chr15 76242339 76242731 + 1.83333 NA intron (NM_000126, intron 9 of 11) L1MB4|LINE|L1 17617 NR_028510 7302 Hs.684881 NR_002721 TYRO3P - TYRO3P protein tyrosine kinase pseudogene pseudo 268-15 chr3 163971576 163971746 + 1.83333 NA Intergenic Intergenic 199895 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 485.833 chr2 95103636 95103947 + 1.83333 NA intron (NR_136152, intron 6 of 10) L1ME4b|LINE|L1 17766 NM_001321995 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 339.667-7 chr8 113861616 113861885 + 1.83333 NA Intergenic Intergenic -424811 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 474.166 chr18 10701239 10701653 + 1.83333 NA intron (NM_022068, intron 39 of 51) intron (NM_022068, intron 39 of 51) 39513 NR_110777 101927410 Hs.436902 NR_110777 ENSG00000260779 LOC101927410 - uncharacterized LOC101927410 ncRNA 207.833-10 chr14 53374917 53375171 + 1.83333 NA Intergenic Intergenic 221690 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 241.667-34 chr6 35894485 35894755 + 1.83333 NA intron (NR_034069, intron 2 of 15) HAL1|LINE|L1 26478 NM_003137 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 397.499 chr8 137178107 137178388 + 1.83333 NA Intergenic Intergenic 235341 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 463.666 chr5 164266725 164267270 + 1.83333 NA Intergenic L1M5|LINE|L1 200405 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 297.833-4 chr2 31539127 31539403 + 1.83333 NA intron (NM_000348, intron 1 of 4) L1MDa|LINE|L1 41673 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 254.001-2 chr11 76540438 76540691 + 1.83333 NA intron (NM_001300942, intron 18 of 21) intron (NM_001300942, intron 18 of 21) 95539 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 222.333-37 chr8 115281683 115281816 + 1.83333 NA Intergenic L1MB1|LINE|L1 386264 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 232-34 chr8 82965732 82965953 + 1.83333 NA Intergenic Intergenic 53738 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 296.833 chr16 75050150 75050417 + 1.83333 NA intron (NM_032268, intron 1 of 4) AluJb|SINE|Alu 51259 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 281.167-5 chr2 79493958 79494276 + 1.83333 NA intron (NR_110289, intron 4 of 4) L1MB7|LINE|L1 6727 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 382.666-2 chr18 22766465 22766703 + 1.83333 NA intron (NR_110782, intron 1 of 1) MIRb|SINE|MIR 20253 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 284-9 chr9 111873510 111873700 + 1.83333 NA Intergenic L2-3_Crp|LINE|L2 -23209 NM_003358 7357 Hs.304249 NM_003358 ENSG00000148154 UGCG GCS|GLCT1 UDP-glucose ceramide glucosyltransferase protein-coding 576.833 chr12 13946956 13947566 + 1.83333 NA intron (NM_000834, intron 1 of 12) LTR101_Mam|LTR|ERVL 33095 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 308.833-2 chr5 9134693 9134885 + 1.83333 NA intron (NM_003966, intron 13 of 22) intron (NM_003966, intron 13 of 22) -80894 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 182-3 chr1 188895387 188895515 + 1.83333 NA Intergenic Intergenic 1451823 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 241.833-2 chr1 162664214 162664463 + 1.83333 NA intron (NM_006182, intron 2 of 17) L1ME4a|LINE|L1 31874 NM_006182 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 417-2 chr10 126791882 126792172 + 1.83333 NA Intergenic L1MCa|LINE|L1 -113382 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 330.667-12 chr8 116195000 116195311 + 1.83333 NA intron (NR_046215, intron 4 of 13) intron (NR_046215, intron 4 of 13) 129904 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 378.166-2 chr8 125789642 125790041 + 1.83333 NA Intergenic Intergenic 161356 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 331-9 chr7 115879626 115880066 + 1.83333 NA Intergenic MER103C|DNA|hAT-Charlie 88467 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 537 chr8 78669138 78669789 + 1.83333 NA intron (NM_001362969, intron 1 of 9) intron (NM_001362969, intron 1 of 9) 3374 NR_156423 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 375.334-3 chr22 20802264 20802644 + 1.83333 NA intron (NM_058004, intron 13 of 54) intron (NM_058004, intron 13 of 54) 28341 NM_000185 3053 Hs.474270 NM_000185 ENSG00000099937 SERPIND1 D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10 serpin family D member 1 protein-coding 236.666-6 chr9 132933798 132934017 + 1.83333 NA intron (NM_000368, intron 2 of 22) intron (NM_000368, intron 2 of 22) 10709 NM_001162426 7248 Hs.370854 NM_000368 ENSG00000165699 TSC1 LAM|TSC TSC complex subunit 1 protein-coding 434.834 chr3 31967977 31968239 + 1.83333 NA intron (NM_001174060, intron 1 of 10) L1MC4|LINE|L1 -13642 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 321.167-7 chr4 78789495 78789827 + 1.83333 NA intron (NM_017593, intron 1 of 13) intron (NM_017593, intron 1 of 13) 13283 NM_198892 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 266.166-2 chr7 92075461 92075718 + 1.83333 NA intron (NM_147185, intron 28 of 49) MIR|SINE|MIR 58888 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 353.167 chr12 11607311 11607623 + 1.83333 NA Intergenic Intergenic -42387 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 289.833-3 chr2 193450573 193450823 + 1.83333 NA Intergenic L1MC3|LINE|L1 700853 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 438.333 chr5 120801115 120801466 + 1.83333 NA Intergenic Intergenic 269826 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 226.5-2 chr1 91062866 91063014 + 1.83333 NA Intergenic L1MEd|LINE|L1 -40685 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 378.166 chr18 32221913 32222620 + 1.83333 NA Intergenic L1MD1|LINE|L1 32227 NM_001308171 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 380.166 chr2 20152178 20152739 + 1.83333 NA Intergenic L1MB4|LINE|L1 72672 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 372.833-2 chr3 185407221 185407497 + 1.83333 NA intron (NM_004721, intron 1 of 13) intron (NM_004721, intron 1 of 13) 44223 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 244.833-17 chr6 157346981 157347165 + 1.83333 NA Intergenic THE1B|LTR|ERVL-MaLR -22814 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 277.5-6 chr2 196008466 196008655 + 1.83333 NA intron (NM_018897, intron 10 of 64) L1MB7|LINE|L1 60277 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 170.833-38 chr5 13254798 13254984 + 1.83333 NA Intergenic Intergenic -222005 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 378.333 chr8 90061180 90061606 + 1.83333 NA intron (NM_001366795, intron 8 of 9) L1MB1|LINE|L1 21486 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 172-54 chr5 118691802 118692031 + 1.83333 NA Intergenic Intergenic 95728 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 353.333-2 chr1 209135324 209135645 + 1.83333 NA Intergenic L1MCb|LINE|L1 163030 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 303-3 chr11 32112744 32112975 + 1.83333 NA Intergenic MADE1|DNA|TcMar-Mariner 21785 NM_002901 5954 Hs.97887 NM_002901 ENSG00000049449 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1 protein-coding 355.666-2 chr5 173097658 173097891 + 1.83333 NA intron (NM_153607, intron 4 of 8) L1MA9|LINE|L1 41422 NM_153607 153222 Hs.484195 NM_153607 ENSG00000164463 CREBRF C5orf41|LRF CREB3 regulatory factor protein-coding 235.333-27 chr8 111337629 111337776 + 1.83333 NA Intergenic Intergenic -38937 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 276.167-5 chr20 24289596 24289855 + 1.83333 NA Intergenic Intergenic 89958 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 386-4 chr2 45970627 45970964 + 1.83333 NA intron (NM_005400, intron 2 of 14) L1MC4|LINE|L1 319120 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 293.5-4 chr13 101324252 101324508 + 1.83333 NA intron (NM_001350749, intron 7 of 43) intron (NM_001350749, intron 7 of 43) 92128 NM_001350751 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 302.333-2 chr1 194910981 194911230 + 1.83333 NA Intergenic (TAATTG)n|Simple_repeat|Simple_repeat 1177610 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 256.833-6 chr17 33557389 33557686 + 1.83333 NA intron (NM_001094, intron 1 of 9) L2c|LINE|L2 -23777 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 351-2 chr2 206918725 206919141 + 1.83333 NA Intergenic LTR78|LTR|ERV1 -20585 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 189.5-61 chr9 93375027 93375215 + 1.83333 NA Intergenic Intergenic -28707 NM_001098808 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 512 chr3 120524365 120524925 + 1.83333 NA Intergenic L1ME1|LINE|L1 -71691 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 440.833-2 chr2 205215937 205216353 + 1.83333 NA intron (NM_205863, intron 15 of 21) Tigger3a|DNA|TcMar-Tigger -466355 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 454.499-2 chr3 136543145 136543545 + 1.83333 NA intron (NM_005862, intron 5 of 33) intron (NM_005862, intron 5 of 33) 209033 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 272.167-2 chr1 100886448 100886684 + 1.83333 NA intron (NR_048570, intron 2 of 5) intron (NR_048570, intron 2 of 5) 8276 NM_001033025 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 174.833-9 chr13 86037806 86037953 + 1.83333 NA Intergenic Intergenic -238460 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 283.667-2 chr10 22399535 22399819 + 1.83333 NA intron (NM_172242, intron 8 of 9) intron (NM_172242, intron 8 of 9) 38252 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 417.332 chr14 71412347 71412727 + 1.83333 NA intron (NM_001354285, intron 2 of 24) intron (NM_001354285, intron 2 of 24) 14200 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 213.833-16 chr2 140392614 140392910 + 1.83333 NA intron (NM_018557, intron 66 of 90) intron (NM_018557, intron 66 of 90) 193923 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 300.5-10 chr4 83929606 83929903 + 1.83333 NA Intergenic L2|LINE|L2 369415 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 148.666-5 chr3 4992443 4992634 + 1.83333 NA Intergenic AluJr|SINE|Alu -12577 NR_125915 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 346.667-9 chrX 17384889 17385155 + 1.83333 NA intron (NM_198270, intron 1 of 7) intron (NM_198270, intron 1 of 7) 9822 NM_198270 4810 Hs.201623 NM_198270 ENSG00000188158 NHS CTRCT40|CXN|SCML1 NHS actin remodeling regulator protein-coding 225.166 chr4 95890846 95891028 + 1.83333 NA Intergenic L1M7|LINE|L1 50844 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 397.167 chr11 48195051 48195432 + 1.83333 NA Intergenic L1M4b|LINE|L1 -21569 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 253-9 chr13 99670903 99671136 + 1.83333 NA intron (NR_104592, intron 1 of 9) L2a|LINE|L2 19952 NR_046526 100874063 Hs.577064 NR_046526 ENSG00000227659 CLYBL-AS2 - CLYBL antisense RNA 2 ncRNA 412.499 chr15 39099119 39099455 + 1.83333 NA Intergenic Intergenic -151382 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 235.5-16 chr18 59675212 59675442 + 1.83333 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 22096 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 300.5-7 chr15 63272942 63273280 + 1.83333 NA Intergenic MER1B|DNA|hAT-Charlie -4439 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 322.833-2 chr12 117510484 117510843 + 1.83333 NA intron (NM_173598, intron 14 of 19) AluSz|SINE|Alu -148861 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 267.167-11 chr19 28347240 28347427 + 1.83333 NA Intergenic HAL1|LINE|L1 -259355 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 360.5-3 chr12 119136498 119136717 + 1.83333 NA intron (NM_194286, intron 8 of 12) Charlie18a|DNA|hAT-Charlie 39877 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 234.5-33 chr8 90247431 90247659 + 1.83333 NA intron (NR_051989, intron 2 of 3) L3|LINE|CR1 26057 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 363.666-2 chr6 48456379 48456792 + 1.83333 NA Intergenic Intergenic -387896 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 282.167-2 chr10 83117351 83117660 + 1.83333 NA Intergenic Intergenic 559584 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 173-38 chr4 41112541 41112643 + 1.83333 NA intron (NM_173075, intron 2 of 16) intron (NM_173075, intron 2 of 16) 101950 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 213.167-17 chr20 54293346 54293536 + 1.83333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 85354 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 506.999 chr12 75443641 75444059 + 1.83333 NA Intergenic L1MC3|LINE|L1 -36905 NM_006851 11010 Hs.205558 NM_006851 ENSG00000139278 GLIPR1 CRISP7|GLIPR|RTVP1 GLI pathogenesis related 1 protein-coding 408.833-3 chr6 138749669 138749958 + 1.83333 NA intron (NR_161205, intron 2 of 2) intron (NR_161205, intron 2 of 2) -23707 NM_015439 25901 Hs.412019 NM_015439 ENSG00000024862 CCDC28A C6orf80|CCRL1AP coiled-coil domain containing 28A protein-coding 235.333-4 chr13 73205544 73205720 + 1.83333 NA Intergenic AluJr4|SINE|Alu 146627 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 517.499 chr2 49040998 49041320 + 1.83333 NA intron (NM_000145, intron 2 of 9) intron (NM_000145, intron 2 of 9) -18444 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 395.333-5 chr3 32323490 32323889 + 1.83333 NA intron (NM_001320308, intron 1 of 2) intron (NM_001320308, intron 1 of 2) -68164 NM_181472 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 271.333-4 chr10 73652844 73653066 + 1.83333 NA intron (NM_001114133, intron 3 of 3) intron (NM_001114133, intron 3 of 3) -1915 NM_024875 79933 Hs.645273 NM_024875 ENSG00000166317 SYNPO2L - synaptopodin 2 like protein-coding 246-11 chr19 56736234 56736440 + 1.83333 NA Intergenic MER74A|LTR|ERVL -28985 NR_110744 101929059 Hs.607132 NR_110744 ENSG00000286125 ZIM2-AS1 ZIM2as ZIM2 antisense RNA 1 ncRNA 383.333-3 chr3 56681243 56681600 + 1.83333 NA intron (NM_001365638, intron 1 of 22) intron (NM_001365638, intron 1 of 22) 1816 NM_001363940 23272 Hs.116877 NM_015224 ENSG00000163946 TASOR C3orf63|FAM208A|RAP140|TASOR1|se89-1 transcription activation suppressor protein-coding 281.333-13 chr7 105706970 105707159 + 1.83333 NA intron (NM_020725, intron 3 of 11) MER20B|DNA|hAT-Charlie -27902 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 262.667-28 chr6 52523339 52523574 + 1.83333 NA intron (NM_012288, intron 2 of 10) L1ME4b|LINE|L1 53604 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 211.333-14 chr14 61278253 61278436 + 1.83333 NA 3' UTR (NM_001017970, exon 1 of 1) 3' UTR (NM_001017970, exon 1 of 1) 2994 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 414.5 chr7 83402318 83403056 + 1.83333 NA exon (NM_012431, exon 10 of 17) exon (NM_012431, exon 10 of 17) 238744 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 370.499-2 chr18 62922616 62922878 + 1.83333 NA intron (NM_194449, intron 10 of 16) intron (NM_194449, intron 10 of 16) 207206 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 230.167-15 chr3 30508553 30508778 + 1.83333 NA Intergenic L1MA4|LINE|L1 -10203 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 500.001 chr7 79550814 79551231 + 1.83333 NA Intergenic Intergenic 97062 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 563.499 chr12 74086337 74086721 + 1.83333 NA Intergenic L1ME3B|LINE|L1 206102 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 349.833-7 chr5 87339311 87339632 + 1.83333 NA intron (NM_022650, intron 5 of 24) intron (NM_022650, intron 5 of 24) -15843 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 391-4 chr6 13825116 13825629 + 1.83333 NA Intergenic Intergenic -10812 NM_001031713 63933 Hs.214043 NM_022102 ENSG00000050393 MCUR1 C6orf79|CCDC90A|FMP32 mitochondrial calcium uniporter regulator 1 protein-coding 145-61 chr4 52660745 52660902 + 1.83333 NA intron (NR_125363, intron 1 of 1) MIRc|SINE|MIR 1417 NR_125363 643783 Hs.631514 NR_125363 ENSG00000248866 USP46-AS1 - USP46 antisense RNA 1 ncRNA 339-4 chr21 37727999 37728220 + 1.83333 NA intron (NM_002240, intron 2 of 3) L1MB3|LINE|L1 188348 NM_002240 3763 Hs.626242 NM_002240 ENSG00000157542 KCNJ6 BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|KPLBS|hiGIRK2 potassium voltage-gated channel subfamily J member 6 protein-coding 265.333-17 chr5 62392212 62392437 + 1.83333 NA intron (NM_001348077, intron 9 of 11) intron (NM_001348077, intron 9 of 11) 11581 NM_014473 27292 Hs.731665 NM_014473 ENSG00000086189 DIMT1 DIM1|DIMT1L|HSA9761|HUSSY5 DIMT1 rRNA methyltransferase and ribosome maturation factor protein-coding 456.5-2 chr5 94598845 94599308 + 1.83333 NA intron (NM_001145678, intron 1 of 20) L1M2|LINE|L1 19528 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 195.5-30 chr4 54942322 54942477 + 1.83333 NA Intergenic Intergenic 183196 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 299.499 chr2 213326707 213326983 + 1.83333 NA intron (NR_047660, intron 4 of 14) intron (NR_047660, intron 4 of 14) 42381 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 310.334-6 chr7 89713683 89714018 + 1.83333 NA Intergenic L1M5|LINE|L1 -405550 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 454.166 chr1 191183140 191183460 + 1.83333 NA Intergenic L1M5|LINE|L1 45198 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 231.834 chr1 177577154 177577379 + 1.83333 NA Intergenic Intergenic -123258 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 271 chr1 116717340 116717545 + 1.83333 NA Intergenic Intergenic 23330 NR_149353 388667 Hs.127851 NR_149353 ENSG00000203864 C1orf137 - chromosome 1 open reading frame 137 (putative) ncRNA 249.667-50 chr9 37793713 37793944 + 1.83333 NA Intergenic L1M4|LINE|L1 -6726 NM_001286810 79269 Hs.118394 NM_024345 ENSG00000122741 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 387.667 chr1 91722597 91723125 + 1.83333 NA intron (NR_036634, intron 8 of 17) Tigger3a|DNA|TcMar-Tigger 163290 NM_001195683 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 308.166 chr22 34033453 34033726 + 1.83333 NA Intergenic HAL1|LINE|L1 -110701 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 303.333-3 chr11 41481466 41481700 + 1.83333 NA Intergenic L1ME1|LINE|L1 -21931 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 247.167-6 chr15 36066427 36066631 + 1.83333 NA Intergenic L1MEg|LINE|L1 139673 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 489.167 chr1 241328061 241328498 + 1.83333 NA intron (NM_001350116, intron 1 of 16) MIRc|SINE|MIR 27547 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 610.499 chr6 69056803 69057278 + 1.83333 NA intron (NM_001704, intron 15 of 31) L1MB2|LINE|L1 421758 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 293.166 chr13 109460511 109460691 + 1.83333 NA Intergenic L1MA7|LINE|L1 59905 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 256.166 chr18 33830401 33830581 + 1.83333 NA Intergenic L1MCa|LINE|L1 218121 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 333.5 chr1 97129945 97130183 + 1.83333 NA intron (NM_000110, intron 20 of 22) intron (NM_000110, intron 20 of 22) 34141 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 182.666 chr10 83522440 83522683 + 1.83333 NA Intergenic Intergenic 154528 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 273.167-16 chr8 115916285 115916603 + 1.83333 NA Intergenic Intergenic -247469 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 210.166 chr11 82070223 82070491 + 1.83333 NA intron (NR_120571, intron 5 of 7) L1ME3A|LINE|L1 -179521 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 510.166 chr10 100690637 100691220 + 1.83333 NA Intergenic Intergenic -44468 NM_001304569 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 337.167-6 chr8 78000885 78001287 + 1.83333 NA Intergenic Intergenic -515254 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 217.666-2 chr4 49144566 49144721 + 1.83333 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 158001 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 237.833-20 chr8 88906735 88906934 + 1.83333 NA Intergenic L1MA6|LINE|L1 -579351 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 295.333-9 chr20 31380831 31381187 + 1.83333 NA intron (NR_073153, intron 1 of 2) L1MD2|LINE|L1 9581 NM_153289 245932 Hs.516998 NM_153289 ENSG00000180483 DEFB119 DEFB-19|DEFB-20|DEFB120|DEFB20|ESC42-RELA|ESC42-RELB defensin beta 119 protein-coding 418.666 chr4 129502850 129503101 + 1.83333 NA Intergenic L1PB4|LINE|L1 268503 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 208.667-43 chr8 123392350 123392643 + 1.83333 NA intron (NM_014109, intron 1 of 27) MIR|SINE|MIR 3951 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 229-17 chr17 61158951 61159150 + 1.83333 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 208654 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 292.667-12 chr20 48828901 48829264 + 1.83333 NA Intergenic MIR|SINE|MIR -1083 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 221.666 chr12 78502755 78502932 + 1.83333 NA Intergenic Intergenic -143097 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 373.666 chr2 58529059 58529375 + 1.83333 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 8464 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 468.333 chr14 43785660 43786075 + 1.83333 NA Intergenic L1ME3A|LINE|L1 721416 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 170-55 chr5 31325654 31325811 + 1.83333 NA 3' UTR (NM_004932, exon 12 of 12) 3' UTR (NM_004932, exon 12 of 12) 132046 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 449.833 chr5 18656905 18657277 + 1.83333 NA Intergenic L1MD2|LINE|L1 849817 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 298.166-3 chr6 135558883 135559081 + 1.83333 NA intron (NR_152845, intron 2 of 4) L1MB3|LINE|L1 61181 NR_152844 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 164-51 chr5 8265136 8265257 + 1.83333 NA Intergenic Intergenic 192368 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 275.666-2 chr17 40490648 40490822 + 1.83333 NA intron (NM_032865, intron 2 of 12) MIRb|SINE|MIR 10888 NM_032865 84951 Hs.438292 NM_032865 ENSG00000131746 TNS4 CTEN|PP14434 tensin 4 protein-coding 276.166 chr22 27950159 27950436 + 1.83333 NA intron (NR_026963, intron 2 of 4) intron (NR_026963, intron 2 of 4) -29685 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 180.333-56 chr7 111893468 111893675 + 1.83333 NA intron (NM_001363540, intron 16 of 52) intron (NM_001363540, intron 16 of 52) 85066 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 388.667-3 chr7 115899823 115900404 + 1.83333 NA Intergenic L1PA15|LINE|L1 68200 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 412.667 chr1 236521062 236521512 + 1.83333 NA intron (NM_201545, intron 2 of 11) L2a|LINE|L2 -2152 NM_006499 3964 Hs.4082 NM_006499 ENSG00000116977 LGALS8 Gal-8|PCTA-1|PCTA1|Po66-CBP galectin 8 protein-coding 412.333 chr6 45162363 45162822 + 1.83333 NA intron (NM_001350325, intron 2 of 10) L2c|LINE|L2 35178 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 422.334 chr5 30110899 30111252 + 1.83333 NA Intergenic L1MEd|LINE|L1 230515 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 438.5 chr15 90610025 90610446 + 1.83333 NA intron (NM_001042574, intron 6 of 14) intron (NM_001042574, intron 6 of 14) -49999 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LINC01585 - long intergenic non-protein coding RNA 1585 ncRNA 281-22 chr8 122629262 122629463 + 1.83333 NA Intergenic Intergenic -60718 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 270.833-18 chr7 36374280 36374512 + 1.83333 NA intron (NM_001100425, intron 2 of 6) L2a|LINE|L2 -7156 NM_001199708 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 422-5 chr8 60990895 60991288 + 1.83333 NA Intergenic Intergenic -23343 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 320.833 chr12 19712279 19712489 + 1.83333 NA Intergenic Intergenic 271785 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 273.334-2 chr6 156239420 156239580 + 1.83333 NA Intergenic Charlie7|DNA|hAT-Charlie -139250 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 619 chr7 51981743 51982334 + 1.83333 NA Intergenic Intergenic -588782 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 488.666 chr4 84046535 84046904 + 1.83333 NA intron (NR_125909, intron 7 of 8) intron (NR_125909, intron 7 of 8) 252450 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 288.333-8 chr3 80476807 80477038 + 1.83333 NA Intergenic Intergenic -287975 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 275.999 chr1 191994036 191994310 + 1.83333 NA Intergenic Intergenic -164289 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 390-5 chr3 174047336 174047747 + 1.83333 NA intron (NM_001365928, intron 4 of 6) L2a|LINE|L2 -126745 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 168.333-43 chr4 60462978 60463128 + 1.83333 NA Intergenic L1M3d|LINE|L1 -459566 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 309.833-3 chr3 112667683 112667926 + 1.83333 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -26661 NM_199512 151887 Hs.477128 NM_199511 ENSG00000091986 CCDC80 CL2|DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 364.999-2 chr7 78701997 78702261 + 1.83333 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -306859 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 316-2 chr2 200404095 200404400 + 1.83333 NA intron (NM_001100423, intron 3 of 12) L2|LINE|L2 95297 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 332-8 chr8 122435574 122435858 + 1.83333 NA intron (NR_131202, intron 2 of 3) MIR|SINE|MIR 132928 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 169.5-76 chr9 100328642 100328978 + 1.83333 NA intron (NM_001161584, intron 7 of 14) intron (NM_001161584, intron 7 of 14) 23761 NM_001161584 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 278-17 chr9 103163132 103163327 + 1.83333 NA intron (NR_121578, intron 8 of 9) intron (NR_121578, intron 8 of 9) 161804 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 164.5-43 chr5 32939256 32939354 + 1.83333 NA Intergenic Intergenic -8138 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 245.334-6 chr5 39078898 39079164 + 1.83333 NA Intergenic Charlie7|DNA|hAT-Charlie -4632 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 174.666-2 chr5 53564434 53564543 + 1.83333 NA intron (NR_134474, intron 1 of 5) intron (NR_134474, intron 1 of 5) 3849 NR_134473 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 364.666-3 chr16 56764331 56764557 + 1.83333 NA intron (NM_014669, intron 3 of 21) AluSz|SINE|Alu -17385 NM_001242795 9688 Hs.276878 NM_014669 ENSG00000102900 NUP93 NIC96 nucleoporin 93 protein-coding 290.833-9 chr9 101730944 101731124 + 1.83333 NA intron (NM_133445, intron 1 of 8) intron (NM_133445, intron 1 of 8) 7546 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 257.833-9 chr4 61990923 61991279 + 1.83333 NA intron (NM_001371343, intron 18 of 23) intron (NM_001371343, intron 18 of 23) 170664 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 280.333-13 chr20 44965811 44965968 + 1.83333 NA promoter-TSS (NM_006282) promoter-TSS (NM_006282) 569 NR_038341 100505826 Hs.196065 NR_038341 ENSG00000227477 STK4-AS1 - STK4 antisense RNA 1 (head to head) ncRNA 186.333-14 chr11 118880580 118880719 + 1.83333 NA Intergenic L3|LINE|CR1 -3243 NM_001716 643 Hs.113916 NM_001716 ENSG00000160683 CXCR5 BLR1|CD185|MDR15 C-X-C motif chemokine receptor 5 protein-coding 300.667-7 chr20 14666381 14666713 + 1.83333 NA intron (NM_001351663, intron 4 of 17) intron (NM_001351663, intron 4 of 17) 112163 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 430-2 chr5 178672655 178672958 + 1.83333 NA Intergenic L1MCb|LINE|L1 -45756 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 307.5-6 chr2 125331627 125331893 + 1.83333 NA Intergenic L1MEb|LINE|L1 786225 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 219-13 chr2 81150733 81150972 + 1.83333 NA Intergenic Intergenic 316094 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 295.833-2 chr15 58466330 58466649 + 1.83333 NA intron (NR_120338, intron 2 of 2) MIR3|SINE|MIR 32246 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 377.333-5 chr4 119586797 119587058 + 1.83333 NA intron (NM_033437, intron 3 of 20) intron (NM_033437, intron 3 of 20) 40810 NM_033430 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 252.833-9 chr7 7949837 7950099 + 1.83333 NA non-coding (NR_110018, exon 5 of 5) non-coding (NR_110018, exon 5 of 5) 18784 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 241.667-3 chr10 43837083 43837493 + 1.83333 NA Intergenic L1MC|LINE|L1 -8018 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 391.5-3 chr12 18637669 18638038 + 1.83333 NA intron (NM_001288774, intron 31 of 32) ERVL-B4-int|LTR|ERVL 99656 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 307.5-7 chr2 154514636 154514989 + 1.83333 NA Intergenic LTR16|LTR|ERVL -57374 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 482.833 chr8 136321275 136321676 + 1.83333 NA Intergenic MIRb|SINE|MIR -209323 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 522.167 chr12 104511567 104511961 + 1.83333 NA intron (NM_018413, intron 1 of 2) MIRb|SINE|MIR 54816 NM_018413 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537|OCBMD carbohydrate sulfotransferase 11 protein-coding 289.5-7 chr3 146687656 146687934 + 1.83333 NA Intergenic L1MA6|LINE|L1 -81579 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 457.666 chr1 237458890 237459261 + 1.83333 NA intron (NM_001035, intron 16 of 104) intron (NM_001035, intron 16 of 104) -12044 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 353.333-7 chr8 136543071 136543413 + 1.83333 NA intron (NR_147196, intron 2 of 5) L1MDa|LINE|L1 12444 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 565.167 chr6 131849960 131850498 + 1.83333 NA intron (NM_006208, intron 3 of 24) intron (NM_006208, intron 3 of 24) 42209 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 303.167-4 chr14 60577904 60578402 + 1.83333 NA Intergenic L1M1|LINE|L1 -61063 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 281-14 chr2 154974254 154974647 + 1.83333 NA Intergenic Intergenic 275755 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 214.667-38 chr8 50094305 50094446 + 1.83333 NA intron (NR_135798, intron 1 of 15) L1PA15|LINE|L1 -69756 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 193.666-3 chr4 98671686 98671867 + 1.83333 NA Intergenic Intergenic 12874 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 295.501 chr3 110994972 110995266 + 1.83333 NA Intergenic Intergenic 74840 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 297.5-10 chr4 96104320 96104726 + 1.83333 NA Intergenic Intergenic -206180 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 348.833-3 chr4 150244566 150245024 + 1.83333 NA intron (NM_001040260, intron 12 of 15) intron (NM_001040260, intron 12 of 15) 166350 NM_001040261 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 383.501 chr18 8809087 8809491 + 1.83333 NA intron (NM_015210, intron 11 of 16) Charlie4a|DNA|hAT-Charlie 91908 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 184.5-20 chr17 61006148 61006284 + 1.83333 NA intron (NM_001353144, intron 16 of 25) intron (NM_001353144, intron 16 of 25) 328365 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 141.5-14 chr11 103239397 103239520 + 1.83333 NA intron (NM_001377, intron 63 of 88) intron (NM_001377, intron 63 of 88) 130032 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 326.166 chr14 46313261 46313517 + 1.83333 NA intron (NR_102702, intron 3 of 3) L1M5|LINE|L1 -157970 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 200-6 chr10 78555776 78555966 + 1.83333 NA Intergenic Intergenic 288529 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 140-67 chr5 99849668 99849751 + 1.83333 NA Intergenic Intergenic 315719 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 160.833-44 chr7 43044772 43044895 + 1.83333 NA Intergenic Intergenic -67814 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 368.833-2 chr7 136989056 136989719 + 1.83333 NA intron (NM_001006626, intron 3 of 4) MIRc|SINE|MIR 86220 NR_030165 574443 NR_030165 ENSG00000207597 MIR490 MIRN490|hsa-mir-490|miR-490 microRNA 490 ncRNA 431.667 chr9 25652382 25652825 + 1.83333 NA Intergenic Intergenic 26255 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 331.333-7 chr3 139725809 139726064 + 1.83333 NA Intergenic Intergenic -47886 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 377.333 chr10 92225964 92226344 + 1.83333 NA intron (NM_001178137, intron 2 of 9) L1ME4a|LINE|L1 17125 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 204.5-37 chr6 135975255 135975389 + 1.83333 NA intron (NM_018945, intron 2 of 12) intron (NM_018945, intron 2 of 12) 97505 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 283.5-11 chr6 127443633 127443901 + 1.83333 NA 3' UTR (NM_001012279, exon 12 of 12) 3' UTR (NM_001012279, exon 12 of 12) 15622 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 457.833 chr4 30769975 30770403 + 1.83333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 49820 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 296.333-10 chr4 101177006 101177299 + 1.83333 NA intron (NM_001130691, intron 2 of 12) intron (NM_001130691, intron 2 of 12) 63720 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 245.333-14 chr4 156320778 156321089 + 1.83333 NA Intergenic L2a|LINE|L2 -367067 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 313.167-4 chr4 70177487 70177800 + 1.83333 NA Intergenic Intergenic -18884 NM_017855 54959 Hs.143811 NM_017855 ENSG00000109205 ODAM APIN odontogenic, ameloblast associated protein-coding 238.166 chr17 69360381 69360669 + 1.83333 NA Intergenic L1MA4A|LINE|L1 -33392 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 279.499 chr13 108083717 108083906 + 1.83333 NA Intergenic Intergenic 130971 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 456.667-3 chr8 116916967 116917427 + 1.83333 NA Intergenic Intergenic -21010 NM_001025357 441376 Hs.437551 NM_001025357 ENSG00000205002 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 267.166-3 chr5 103289255 103289415 + 1.83333 NA Intergenic Intergenic 29911 NM_001316968 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 365.166 chr15 70923812 70924219 + 1.83333 NA intron (NM_017691, intron 7 of 15) L1MC4|LINE|L1 31572 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 310-8 chr3 35220472 35220778 + 1.83333 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 173398 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 411.499 chr17 28673767 28674085 + 1.83333 NA intron (NM_003170, intron 2 of 36) intron (NM_003170, intron 2 of 36) 11721 NM_001320755 6830 Hs.250429 NM_003170 ENSG00000109111 SUPT6H SPT6|SPT6H|emb-5 SPT6 homolog, histone chaperone and transcription elongation factor protein-coding 237.833-22 chr8 115528364 115528817 + 1.83333 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 139423 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 232-15 chr17 63194925 63195231 + 1.83333 NA intron (NM_025185, intron 5 of 25) intron (NM_025185, intron 5 of 25) 228843 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 239.833-5 chr10 52962932 52963148 + 1.83333 NA Intergenic L1MA9|LINE|L1 -191340 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 370.499 chr1 97611498 97611855 + 1.83333 NA intron (NM_000110, intron 8 of 22) MIR|SINE|MIR -185245 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 153.667-3 chr1 39809334 39809560 + 1.83333 NA Intergenic L1MC4|LINE|L1 20471 NR_135805 101929536 Hs.552820 NR_135805 ENSG00000261798 LOC101929536 - uncharacterized LOC101929536 ncRNA 229.166-2 chr5 147955206 147955397 + 1.83333 NA Intergenic MLT1D|LTR|ERVL-MaLR -48763 NM_206966 389336 Hs.660038 NM_206966 ENSG00000178776 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 439.166 chr20 44248863 44249174 + 1.83333 NA intron (NR_046353, intron 1 of 3) intron (NR_046353, intron 1 of 3) 1710 NR_046353 78997 Hs.517059 NM_024034 ENSG00000124194 GDAP1L1 dJ881L22.1|dJ995J12.1.1 ganglioside induced differentiation associated protein 1 like 1 protein-coding 235.333-22 chr5 21644103 21644261 + 1.83333 NA Intergenic L1M4b|LINE|L1 184702 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 310.167-6 chr5 13564879 13565134 + 1.83333 NA Intergenic L1MC3|LINE|L1 379474 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 273 chr1 207469075 207469267 + 1.83333 NA exon (NM_001877, exon 5 of 19) exon (NM_001877, exon 5 of 19) 14843 NM_001877 1380 Hs.445757 NM_001877 ENSG00000117322 CR2 C3DR|CD21|CR|CVID7|SLEB9 complement C3d receptor 2 protein-coding 175.334-4 chr18 9941071 9941261 + 1.83333 NA intron (NM_194434, intron 4 of 5) intron (NM_194434, intron 4 of 5) 27150 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 295.167-9 chr4 168855220 168855686 + 1.83333 NA intron (NM_001367567, intron 1 of 11) intron (NM_001367567, intron 1 of 11) 23358 NM_001367568 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 426.666-2 chr15 67344097 67344715 + 1.83333 NA intron (NM_001031715, intron 6 of 20) Tigger6a|DNA|TcMar-Tigger -89208 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 139.5-73 chr8 88615870 88616008 + 1.83333 NA Intergenic L1M4|LINE|L1 -288456 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 429.832 chr18 52260083 52260400 + 1.83333 NA Intergenic Intergenic -79956 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 320.833-6 chr4 84822165 84822384 + 1.83333 NA intron (NM_014991, intron 10 of 67) intron (NM_014991, intron 10 of 67) -143342 NR_152773 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 483.666 chr5 104360915 104361419 + 1.83333 NA Intergenic Intergenic -738307 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 302-5 chr1 178654859 178655204 + 1.83333 NA Intergenic Intergenic -22718 NR_039622 100616328 NR_039622 ENSG00000266417 MIR4424 - microRNA 4424 ncRNA 348.167-4 chr3 112540166 112540577 + 1.83333 NA intron (NM_001278712, intron 7 of 10) intron (NM_001278712, intron 7 of 10) -20949 NM_001348906 55032 Hs.237480 NM_017945 ENSG00000138459 SLC35A5 - solute carrier family 35 member A5 protein-coding 275.833-7 chr4 83753888 83754158 + 1.83333 NA Intergenic Intergenic 217915 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 313.333-7 chr5 54943972 54944314 + 1.83333 NA Intergenic MIRc|SINE|MIR 41450 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 261.833-3 chr11 103435323 103435571 + 1.83333 NA intron (NM_001377, intron 84 of 88) intron (NM_001377, intron 84 of 88) 326021 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 454.999 chr22 39929008 39929481 + 1.83333 NA intron (NM_001291828, intron 1 of 4) L1MC4a|LINE|L1 2640 NM_001291826 9402 Hs.517499 NM_004810 ENSG00000100351 GRAP2 GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38 GRB2 related adaptor protein 2 protein-coding 266.666-4 chr4 156854054 156854265 + 1.83333 NA intron (NM_016205, intron 1 of 5) intron (NM_016205, intron 1 of 5) 117640 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 478.5 chr7 27681002 27681636 + 1.83333 NA Intergenic Intergenic -18436 NM_152740 11112 Hs.406758 NM_152740 ENSG00000106049 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 257.166 chr11 30891045 30891220 + 1.83333 NA intron (NM_001367979, intron 36 of 38) L1ME4b|LINE|L1 101554 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 263.333-14 chr18 12620927 12621175 + 1.83333 NA intron (NM_020148, intron 2 of 15) AluJb|SINE|Alu 35681 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 407.833 chr1 50853815 50854159 + 1.83333 NA intron (NM_007051, intron 2 of 18) MIR3|SINE|MIR 106280 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 377-3 chr19 29905222 29905947 + 1.83333 NA Intergenic AluSx|SINE|Alu -18073 NM_001252641 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 476.833 chr10 52213948 52214611 + 1.83333 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 99849 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 276.833 chr1 82748368 82748541 + 1.83333 NA Intergenic L2a|LINE|L2 -154729 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 314-7 chr2 137869814 137870104 + 1.83333 NA Intergenic Intergenic 57973 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 430.667 chr1 239348193 239348635 + 1.83333 NA Intergenic Intergenic -38154 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 267.333-5 chr11 84478711 84478991 + 1.83333 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -161512 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 225-3 chr10 27447491 27447628 + 1.83333 NA Intergenic Intergenic -33191 NM_001034842 374308 Hs.631832 NM_001034842 ENSG00000182077 PTCHD3 PTR patched domain containing 3 protein-coding 435.833 chr11 31415149 31415532 + 1.83333 NA intron (NM_181706, intron 3 of 4) intron (NM_181706, intron 3 of 4) 45480 NM_181706 120526 Hs.187269 NM_181706 ENSG00000170946 DNAJC24 DPH4|JJJ3|ZCSL3 DnaJ heat shock protein family (Hsp40) member C24 protein-coding 516.166 chr2 208503038 208503384 + 1.83333 NA Intergenic L1MC1|LINE|L1 -39431 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 462.166 chr17 71220352 71220749 + 1.83333 NA Intergenic Intergenic -18371 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 423.833 chr6 105422481 105422909 + 1.83333 NA Intergenic Intergenic -19613 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 276.333-6 chr11 47102269 47102425 + 1.83333 NA intron (NM_001003677, intron 3 of 8) intron (NM_001003677, intron 3 of 8) 74532 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 436.332 chr1 173647575 173647924 + 1.83333 NA intron (NM_198493, intron 2 of 5) MLT1-int|LTR|ERVL-MaLR 12411 NM_001195190 730159 Hs.647757 NM_001195190 ENSG00000232113 TEX50 - testis expressed 50 protein-coding 173.667-18 chr14 73155184 73155322 + 1.83333 NA intron (NM_000021, intron 3 of 11) MIR|SINE|MIR 18746 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 376.334-4 chr6 93457817 93458192 + 1.83333 NA Intergenic Intergenic -38422 NM_001288630 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 284.833-4 chr21 28128589 28128998 + 1.83333 NA intron (NR_126012, intron 5 of 5) LTR16A|LTR|ERVL 38390 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 269.334-5 chr20 48998780 48999462 + 1.83333 NA intron (NM_006420, intron 25 of 38) AluSx3|SINE|Alu 46935 NR_110624 102723483 Hs.209000 NR_110624 ENSG00000227431 CSE1L-AS1 - CSE1L antisense RNA 1 ncRNA 343.166 chr10 73005340 73005575 + 1.83333 NA Intergenic Intergenic -50651 NM_032562 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 471.332 chr7 66306673 66307017 + 1.83333 NA intron (NM_003596, intron 3 of 5) AluSq|SINE|Alu 93563 NR_026873 285908 Hs.50755 NM_181722 ENSG00000179406 LINC00174 NCRNA00174 long intergenic non-protein coding RNA 174 ncRNA 246.666-8 chr7 48712205 48712420 + 1.83333 NA Intergenic L1MDb|LINE|L1 -212235 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 206-34 chr7 51428187 51428355 + 1.83333 NA Intergenic Intergenic -35015 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 317-8 chr6 55248214 55248595 + 1.83333 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) -79065 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 403.333-2 chr11 58340472 58340816 + 1.83333 NA Intergenic L1PA16|LINE|L1 18425 NM_001005489 219965 NM_001005489 ENSG00000197786 OR5B17 OR11-237|OR5B20P olfactory receptor family 5 subfamily B member 17 protein-coding 286.333-12 chr7 95105144 95105437 + 1.83333 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 195392 NM_001166162 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 337.834 chr14 55469062 55469413 + 1.83333 NA Intergenic Intergenic -28692 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 276.5-11 chr4 84805707 84805978 + 1.83333 NA intron (NM_014991, intron 15 of 67) intron (NM_014991, intron 15 of 67) -159774 NR_152773 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 373.5-3 chr4 34247798 34248271 + 1.83333 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 21713 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 364.166-2 chr3 96708291 96708571 + 1.83333 NA Intergenic Intergenic -106163 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 402.666-3 chr8 118084819 118085317 + 1.83333 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 26751 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 205-43 chr8 127861505 127861642 + 1.83333 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 65611 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 232.833-18 chr7 71837654 71837785 + 1.83333 NA intron (NM_001363460, intron 4 of 5) L1M6|LINE|L1 499672 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 277.167-3 chr15 91906587 91906907 + 1.83333 NA intron (NR_135775, intron 1 of 10) intron (NR_135775, intron 1 of 10) 52443 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 283.5-8 chr22 41040840 41041046 + 1.83333 NA Intergenic AluY|SINE|Alu 32778 NR_132979 106635682 NR_132979 SNORD140 - small nucleolar RNA, C/D box 140 snoRNA 478.999 chr2 54294250 54294522 + 1.83333 NA intron (NM_001320589, intron 4 of 4) intron (NM_001320589, intron 4 of 4) -36498 NM_001369403 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 191.334-10 chr8 120407664 120407844 + 1.83333 NA intron (NM_014078, intron 6 of 6) intron (NM_014078, intron 6 of 6) 37396 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 284.5-17 chr8 108450495 108450707 + 1.83333 NA intron (NR_138033, intron 3 of 9) intron (NR_138033, intron 3 of 9) 6977 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 279.333-11 chr4 181115807 181115981 + 1.83333 NA intron (NR_033918, intron 2 of 2) L1MEd|LINE|L1 43255 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 241.834-7 chr4 65538033 65538363 + 1.83333 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 131290 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 179-7 chr12 40315341 40315530 + 1.83333 NA intron (NM_198578, intron 33 of 50) intron (NM_198578, intron 33 of 50) -77959 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 217.334-2 chr13 93055409 93055664 + 1.83333 NA intron (NR_126360, intron 2 of 3) L4_C_Mam|LINE|RTE-X 10195 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 314.166-3 chr4 33056758 33057002 + 1.83333 NA Intergenic Intergenic 705842 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 414.166 chr3 183597271 183597671 + 1.83333 NA Intergenic Intergenic -38152 NM_017644 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 422.001 chr21 18370519 18370928 + 1.83333 NA intron (NM_002772, intron 6 of 24) intron (NM_002772, intron 6 of 24) 33062 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 569.5 chr2 215530442 215531096 + 1.83333 NA Intergenic L1ME4a|LINE|L1 77062 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 133 chr1 40229244 40229338 + 1.83333 NA intron (NM_012421, intron 6 of 7) intron (NM_012421, intron 6 of 7) -18646 NM_001008740 127391 Hs.406265 NM_001008740 ENSG00000188800 TMCO2 dJ39G22.2 transmembrane and coiled-coil domains 2 protein-coding 264.167-4 chr10 63209394 63209653 + 1.83333 NA intron (NM_001322258, intron 7 of 24) intron (NM_001322258, intron 7 of 24) 59700 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 367.499 chr3 28096502 28096879 + 1.83333 NA Intergenic L1M4b|LINE|L1 -144929 NR_138585 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 256.167-11 chr20 39900525 39900755 + 1.83333 NA Intergenic Intergenic -103821 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 434.5 chr12 41599739 41600048 + 1.83333 NA Intergenic L1MB7|LINE|L1 162154 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 485-2 chr6 70278855 70279475 + 1.83333 NA intron (NM_001851, intron 10 of 37) intron (NM_001851, intron 10 of 37) 4032 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 315.833-5 chr7 9723550 9723867 + 1.83333 NA Intergenic Intergenic 89438 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 183.333-5 chr1 154871607 154871742 + 1.83333 NA Intergenic Intergenic -1393 NM_002249 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 461.833 chr16 68205796 68206128 + 1.83333 NA intron (NM_173165, intron 9 of 9) AluSx3|SINE|Alu 27537 NR_106831 102466194 NR_106831 ENSG00000284259 MIR6773 hsa-mir-6773 microRNA 6773 ncRNA 310.167-7 chr6 69086177 69086501 + 1.83333 NA intron (NM_001704, intron 17 of 31) intron (NM_001704, intron 17 of 31) 451057 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 170.833-19 chr2 133773326 133773446 + 1.83333 NA Intergenic L2a|LINE|L2 -204923 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 336.5 chr10 99929999 99930200 + 1.83333 NA exon (NM_001318326, exon 1 of 14) exon (NM_001318326, exon 1 of 14) 808 NM_001318326 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 206.166-2 chr6 131839091 131839243 + 1.83333 NA intron (NM_006208, intron 1 of 24) intron (NM_006208, intron 1 of 24) 31147 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 389.333-3 chr5 7278365 7278723 + 1.83333 NA Intergenic Intergenic -9190 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 284.166-2 chr5 26419238 26419471 + 1.83333 NA Intergenic Intergenic 619232 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 260.5-25 chr7 24564571 24564835 + 1.83333 NA Intergenic Intergenic -8749 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 253.333-3 chr1 180858456 180858696 + 1.83333 NA intron (NM_004736, intron 11 of 14) intron (NM_004736, intron 11 of 14) -54321 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 449.166-2 chr6 126777064 126777538 + 1.83333 NA Intergenic Intergenic 292670 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 319.833-3 chr11 9360468 9360695 + 1.83333 NA Intergenic AluSp|SINE|Alu -24071 NM_006391 10527 Hs.744911 NM_006391 ENSG00000205339 IPO7 Imp7|RANBP7 importin 7 protein-coding 192.333-3 chr1 218976551 218976688 + 1.83333 NA intron (NR_031644, intron 6 of 6) L1MD|LINE|L1 -58108 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 328.833 chr10 28887415 28887640 + 1.83333 NA Intergenic L1ME4b|LINE|L1 41119 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 212-41 chr8 138107835 138108020 + 1.83333 NA Intergenic Intergenic -24382 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 444.167-3 chr3 3925683 3926309 + 1.83333 NA Intergenic Intergenic -125121 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 340.166 chr12 28567834 28568044 + 1.83333 NA Intergenic Intergenic -377201 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 144.167-15 chr11 102912800 102912940 + 1.83333 NA Intergenic Intergenic -37888 NM_002426 4321 Hs.1695 NM_002426 ENSG00000262406 MMP12 HME|ME|MME|MMP-12 matrix metallopeptidase 12 protein-coding 610.667 chr12 1281736 1282458 + 1.83333 NA intron (NR_027948, intron 14 of 19) intron (NR_027948, intron 14 of 19) -218394 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 418.833 chr21 23458292 23458737 + 1.83333 NA Intergenic Intergenic -73679 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 516.834 chr12 75675959 75676608 + 1.83333 NA Intergenic Intergenic -164674 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 485.333-2 chr3 105860289 105860782 + 1.83333 NA intron (NR_135809, intron 2 of 18) MIRb|SINE|MIR 7056 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 371.333-5 chr7 42519292 42519589 + 1.83333 NA Intergenic Intergenic 187007 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 202.667-10 chr14 38410161 38410380 + 1.83333 NA Intergenic L1MA9|LINE|L1 -154177 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 378.5-2 chr3 32035639 32036158 + 1.83333 NA Intergenic L1MB3|LINE|L1 -54048 NM_001174060 114884 Hs.150122 NM_017784 ENSG00000144645 OSBPL10 ORP10|OSBP9 oxysterol binding protein like 10 protein-coding 158.666-2 chr10 121791464 121791554 + 1.83333 NA intron (NM_001001976, intron 10 of 11) intron (NM_001001976, intron 10 of 11) 136522 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 379.666 chr12 27365842 27366104 + 1.83333 NA intron (NM_001248003, intron 1 of 14) L1ME3D|LINE|L1 33137 NM_001248005 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 183.333-19 chr14 34403768 34403929 + 1.83333 NA Intergenic Intergenic 58392 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 304.833-6 chr6 37903699 37903981 + 1.83333 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 84113 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 373.334-2 chr8 74587273 74587712 + 1.83333 NA Intergenic Intergenic -12374 NR_033830 441355 Hs.647162 NR_033830 ENSG00000254349 MIR2052HG - MIR2052 host gene ncRNA 226.166-5 chr3 76952495 76952690 + 1.83333 NA Intergenic Intergenic -87507 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 436.834 chr10 51578794 51579290 + 1.83333 NA intron (NM_001098512, intron 3 of 17) AluSz|SINE|Alu 120553 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 332.5 chr10 84531527 84532324 + 1.83333 NA Intergenic L1MB8|LINE|L1 106756 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 393.833-2 chr4 45505859 45506280 + 1.83333 NA Intergenic L1MB1|LINE|L1 617985 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 410.166 chr4 60643923 60644282 + 1.83333 NA Intergenic MLT1F2|LTR|ERVL-MaLR -278517 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 359.167-2 chr2 26546314 26546641 + 1.83333 NA intron (NM_194248, intron 1 of 46) AluSq2|SINE|Alu 12279 NM_001287489 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 245.333-4 chr12 107694551 107694722 + 1.83333 NA intron (NM_007062, intron 5 of 14) intron (NM_007062, intron 5 of 14) 8594 NM_001317962 11137 Hs.506652 NM_007062 ENSG00000136045 PWP1 IEF-SSP-9502 PWP1 homolog, endonuclein protein-coding 280.166-2 chr18 8489094 8489458 + 1.83333 NA Intergenic L1ME3G|LINE|L1 -120169 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 258.5-9 chr18 75500509 75500707 + 1.83333 NA Intergenic Intergenic -72905 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 213.833-22 chr3 88733608 88733754 + 1.83333 NA Intergenic Intergenic -373940 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 258.333-21 chr2 156676549 156676873 + 1.83333 NA Intergenic Intergenic 240332 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 384.666 chr1 176853923 176854136 + 1.83333 NA Intergenic Intergenic 175416 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 422-4 chr5 123889404 123889901 + 1.83333 NA Intergenic L1MA4|LINE|L1 344235 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 285.5-8 chr16 63137719 63138023 + 1.83333 NA Intergenic Intergenic -1101433 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 338.167 chr10 30257535 30257788 + 1.83333 NA Intergenic L1MB4|LINE|L1 45809 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 217.5-22 chr2 21968380 21968757 + 1.83333 NA Intergenic Intergenic -257916 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 335-7 chr6 71185114 71185408 + 1.83333 NA Intergenic L1PA15|LINE|L1 -103550 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 425.666 chr3 147773293 147773672 + 1.83333 NA Intergenic Intergenic -304677 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 223.667-25 chr5 125579030 125579214 + 1.83333 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 85861 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 246.166 chr18 10558137 10558338 + 1.83333 NA Intergenic Intergenic 32210 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 307.5-11 chr8 76482519 76482777 + 1.83333 NA intron (NR_105006, intron 3 of 5) intron (NR_105006, intron 3 of 5) 75994 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 410.999 chr2 13268343 13268680 + 1.83333 NA Intergenic LTR78|LTR|ERV1 -261498 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 507.333 chr10 41897918 41899025 + 1.83333 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 469574 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 348-6 chr3 110197701 110197937 + 1.83333 NA Intergenic L1M5|LINE|L1 594991 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 420.334-2 chr8 101495684 101496066 + 1.83333 NA intron (NM_001330593, intron 1 of 15) AluSx3|SINE|Alu 3436 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 239.5-23 chr7 21289786 21289971 + 1.83333 NA Intergenic Intergenic -138205 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 334.833-2 chr16 50520022 50520320 + 1.83333 NA Intergenic AluSz|SINE|Alu -28225 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 258.167-4 chr14 46447251 46447520 + 1.83333 NA intron (NR_102701, intron 4 of 5) intron (NR_102701, intron 4 of 5) -23974 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 242-19 chr5 133624210 133624439 + 1.83333 NA Intergenic L1MB5|LINE|L1 -11783 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 204.333-31 chr2 220908618 220908753 + 1.83333 NA Intergenic Intergenic 663619 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 300.5-8 chr3 197802623 197803013 + 1.83333 NA intron (NM_001365717, intron 1 of 19) intron (NM_001365717, intron 1 of 19) 11564 NR_158582 84859 Hs.518414 NM_032773 ENSG00000186001 LRCH3 - leucine rich repeats and calponin homology domain containing 3 protein-coding 353.166 chr2 132687016 132687302 + 1.83333 NA intron (NM_207481, intron 17 of 17) intron (NM_207481, intron 17 of 17) -15633 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 297.499 chr18 2849310 2849504 + 1.83333 NA intron (NM_032048, intron 2 of 7) intron (NM_032048, intron 2 of 7) 2401 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 292.667-14 chr3 4499837 4500149 + 1.83333 NA intron (NM_001168272, intron 2 of 60) intron (NM_001168272, intron 2 of 60) 6645 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 394.167 chr2 27639069 27639490 + 1.83333 NA intron (NM_007266, intron 9 of 13) intron (NM_007266, intron 9 of 13) 10229 NM_007266 11321 Hs.18259 NM_007266 ENSG00000198522 GPN1 ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1 GPN-loop GTPase 1 protein-coding 151.333-66 chr4 38158845 38158955 + 1.83333 NA Intergenic L2a|LINE|L2 38946 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 524.666 chr7 77912267 77912667 + 1.83333 NA intron (NM_001366085, intron 7 of 10) intron (NM_001366085, intron 7 of 10) 72337 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 258.333-26 chr4 173171043 173171305 + 1.83333 NA intron (NM_017423, intron 1 of 11) intron (NM_017423, intron 1 of 11) -1522 NR_134242 101930370 Hs.563191 NR_134241 ENSG00000245213 LOC101930370 - uncharacterized LOC101930370 ncRNA 583.166 chr13 37045722 37046110 + 1.83333 NA intron (NM_017569, intron 5 of 24) intron (NM_017569, intron 5 of 24) 13571 NM_001278482 55578 Hs.435815 NM_017569 ENSG00000102710 SUPT20H C13|C13orf19|FAM48A|FP757|P38IP|SPT20 SPT20 homolog, SAGA complex component protein-coding 190.333-63 chrX 152212524 152212647 + 1.83333 NA intron (NM_000808, intron 6 of 9) L2c|LINE|L2 -74007 NM_001011543 4109 Hs.18048 NM_021048 ENSG00000124260 MAGEA10 CT1.10|MAGE10 MAGE family member A10 protein-coding 254.833 chr1 112921415 112921677 + 1.83333 NA intron (NM_003051, intron 3 of 4).2 L1ME4a|LINE|L1 -1804 NR_002796 246182 Hs.647691 NR_002796 AKR7A2P1 AFARP1 aldo-keto reductase family 7 member A2 pseudogene 1 pseudo 246.166-2 chr7 122219612 122219801 + 1.83333 NA Intergenic Intergenic -75457 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 478.168 chr6 84317598 84318088 + 1.83333 NA Intergenic L1ME1|LINE|L1 -90200 NM_001286206 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 370.5-5 chr8 144557825 144558248 + 1.83333 NA intron (NM_025251, intron 2 of 10) L1M3|LINE|L1 -28925 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 255.166-2 chr8 54189126 54189299 + 1.83333 NA Intergenic Intergenic 53971 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 381.833-2 chr21 21154944 21155190 + 1.83333 NA intron (NM_001352597, intron 1 of 10) intron (NM_001352597, intron 1 of 10) 7905 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 433.666 chr7 81245204 81245458 + 1.83333 NA Intergenic Intergenic 316488 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 324.333 chr1 185185277 185185493 + 1.83333 NA intron (NM_017673, intron 9 of 18) intron (NM_017673, intron 9 of 18) 28218 NM_017673 54823 Hs.134183 NM_017673 ENSG00000116668 SWT1 C1orf26|HsSwt1 SWT1 RNA endoribonuclease homolog protein-coding 389.333 chr1 230912425 230912652 + 1.83333 NA intron (NM_024525, intron 19 of 22) intron (NM_024525, intron 19 of 22) 37692 NR_110681 101927604 Hs.638929 NR_110681 ENSG00000223393 LOC101927604 - uncharacterized LOC101927604 ncRNA 315-4 chr21 30635789 30636057 + 1.83333 NA TTS (NM_181616) TTS (NM_181616) 717 NM_181616 337976 Hs.553698 NM_181616 ENSG00000184032 KRTAP20-2 KAP20.2 keratin associated protein 20-2 protein-coding 373.333-3 chr12 50115707 50116096 + 1.83333 NA intron (NM_001257134, intron 1 of 1) intron (NM_001257134, intron 1 of 1) 3665 NM_001257133 84987 Hs.388645 NM_032901 ENSG00000178449 COX14 C12orf62|PCAG1 cytochrome c oxidase assembly factor COX14 protein-coding 158.833-18 chr12 84604377 84604543 + 1.83333 NA Intergenic Intergenic 308339 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 620.166 chr14 62479990 62480659 + 1.83333 NA Intergenic L1ME1|LINE|L1 -340351 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 336.166-2 chr6 24382031 24382302 + 1.83333 NA intron (NM_001195610, intron 1 of 10) intron (NM_001195610, intron 1 of 10) 1126 NM_001195610 51473 Hs.61345 NM_016356 ENSG00000146038 DCDC2 DCDC2A|DFNB66|NPHP19|NSC|RU2|RU2S doublecortin domain containing 2 protein-coding 291.5-14 chr2 211407169 211407488 + 1.83333 NA intron (NM_005235, intron 25 of 27) intron (NM_005235, intron 25 of 27) 789757 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 564.5 chr10 65367939 65368480 + 1.83333 NA Intergenic HAL1|LINE|L1 -203216 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 177-23 chr16 73685811 73685980 + 1.83333 NA Intergenic L4_A_Mam|LINE|RTE-X 299090 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 246.5-20 chr6 120454146 120454409 + 1.83333 NA Intergenic Intergenic 439098 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 371-6 chr7 37751116 37751435 + 1.83333 NA Intergenic L2a|LINE|L2 67509 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 199.167-9 chr11 113664741 113664933 + 1.83333 NA Intergenic LTR47A2|LTR|ERVL 41471 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 429.333 chr1 228820480 228820987 + 1.83333 NA Intergenic L1MDa|LINE|L1 85254 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 208.167-7 chr17 35035659 35035885 + 1.83333 NA intron (NR_037713, intron 1 of 6) AluSq2|SINE|Alu 27935 NM_001017368 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding 306.499 chr2 58019800 58020003 + 1.83333 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) -26741 NM_001288836 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 415.167 chr11 58017669 58017993 + 1.83333 NA Intergenic L1ME3C|LINE|L1 -6050 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 324.666 chr12 48458591 48458860 + 1.83333 NA Intergenic Intergenic -13940 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 336-5 chr2 3864643 3864936 + 1.83333 NA Intergenic Zaphod|DNA|hAT-Tip100 109243 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 269.333-18 chr8 115828509 115828818 + 1.83333 NA Intergenic L1MEf|LINE|L1 -159688 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 242.666-3 chr15 57558507 57558667 + 1.83333 NA Intergenic L1ME4a|LINE|L1 -33317 NR_104371 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 321.5 chr1 109026524 109026728 + 1.83333 NA intron (NM_014969, intron 1 of 14) MamRep605|LTR?|LTR? 15602 NM_001142550 22911 Hs.570055 NM_014969 ENSG00000085433 WDR47 - WD repeat domain 47 protein-coding 207.167-11 chr14 35585141 35585457 + 1.83333 NA intron (NM_014990, intron 36 of 40) L1MCa|LINE|L1 51135 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 181.5-10 chr11 36686502 36686770 + 1.83333 NA Intergenic Intergenic -88357 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 290.333-6 chr17 18347461 18347876 + 1.83333 NA intron (NM_001281786, intron 3 of 10) intron (NM_001281786, intron 3 of 10) -6782 NR_106836 102466733 NR_106836 ENSG00000283772 MIR6778 hsa-mir-6778 microRNA 6778 ncRNA 337.333-6 chr8 101615601 101615981 + 1.83333 NA intron (NM_024915, intron 8 of 15) L2a|LINE|L2 123352 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 265.166-4 chr9 82750529 82750700 + 1.83333 NA Intergenic Intergenic 312528 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 519.5 chrX 84675073 84675582 + 1.83333 NA Intergenic L1MA3|LINE|L1 -172874 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 378.666-2 chr14 19821279 19821581 + 1.83333 NA intron (NM_001004723, intron 1 of 1) intron (NM_001004723, intron 1 of 1) 17660 NM_001004723 390429 Hs.512490 NM_001004723 ENSG00000176294 OR4N2 OR14-13|OR14-8 olfactory receptor family 4 subfamily N member 2 protein-coding 511.333 chr8 114116728 114117133 + 1.83333 NA Intergenic Intergenic -679991 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 266.166 chr20 40055500 40055691 + 1.83333 NA Intergenic Intergenic 51134 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 229.5-6 chr10 62416402 62416626 + 1.83333 NA intron (NM_199451, intron 3 of 7) intron (NM_199451, intron 3 of 7) -41387 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 278-6 chr15 60098616 60098808 + 1.83333 NA Intergenic Intergenic 94401 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 286.667-7 chr2 124563522 124563718 + 1.83333 NA intron (NM_130773, intron 11 of 23) L2c|LINE|L2 538333 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 217.5-19 chr18 2677954 2678200 + 1.83333 NA intron (NM_015295, intron 5 of 47) L1MB7|LINE|L1 22190 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 408-2 chr3 84976194 84976487 + 1.83333 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 17351 NM_001167674 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 257.166-4 chr4 36674451 36674698 + 1.83333 NA Intergenic Intergenic -32674 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 399.666 chr20 49817881 49818277 + 1.83333 NA intron (NR_048539, intron 2 of 13) intron (NR_048539, intron 2 of 13) 5251 NM_015266 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 372.834 chr2 29025098 29025445 + 1.83333 NA intron (NM_001321538, intron 12 of 18) MIR|SINE|MIR 43973 NM_001321538 165186 Hs.525977 NM_199280 ENSG00000189350 TOGARAM2 FAM179A TOG array regulator of axonemal microtubules 2 protein-coding 186.333-52 chr7 91352630 91352822 + 1.83333 NA Intergenic Intergenic 88293 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 271.833-5 chr14 72008064 72008274 + 1.83333 NA intron (NM_001370288, intron 2 of 16) MLT1F2-int|LTR|ERVL-MaLR 74642 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 284.167-16 chr6 21864624 21864867 + 1.83333 NA intron (NR_015410, intron 4 of 11) intron (NR_015410, intron 4 of 11) 198332 NR_015410 401237 Hs.712707 NR_015410 CASC15 CANT|LINC00340|lnc-SOX4-1 cancer susceptibility 15 ncRNA 205-42 chr8 113828366 113828503 + 1.83333 NA Intergenic Intergenic -391495 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 206-15 chr18 14019829 14020008 + 1.83333 NA Intergenic Intergenic -104211 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 534.666 chr15 70221462 70221945 + 1.83333 NA Intergenic Intergenic -123786 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 356.499 chr12 26882258 26882512 + 1.83333 NA Intergenic Intergenic -49191 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 420.834-4 chr8 137290659 137291051 + 1.83333 NA Intergenic L2a|LINE|L2 122733 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 286.333-6 chr2 133089068 133089276 + 1.83333 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 173615 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 173.333-56 chr5 150717092 150717200 + 1.83333 NA intron (NM_001135643, intron 12 of 13) intron (NM_001135643, intron 12 of 13) -16084 NM_018047 55696 Hs.713564 NM_018047 ENSG00000086589 RBM22 Cwc2|ZC3H16|fSAP47 RNA binding motif protein 22 protein-coding 170.833-25 chr3 65239237 65239346 + 1.83333 NA Intergenic Intergenic -551291 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 168.833-43 chr4 137940414 137940636 + 1.83333 NA Intergenic L1M1|LINE|L1 -148489 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 208-4 chr11 5239141 5239668 + 1.83333 NA Intergenic Intergenic 4188 NR_001589 3044 Hs.20205 NR_001589 HBBP1 HBH1|HBHP hemoglobin subunit beta pseudogene 1 pseudo 145.333 chr1 48884185 48884308 + 1.83333 NA intron (NM_001323575, intron 5 of 12) MIRb|SINE|MIR -107277 NM_001349795 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 218.167-17 chr3 41452851 41453081 + 1.83333 NA intron (NR_136342, intron 32 of 34) intron (NR_136342, intron 32 of 34) 253461 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 235.5-3 chr10 23700780 23701034 + 1.83333 NA intron (NM_001098500, intron 1 of 18) L2a|LINE|L2 6180 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 257.333-11 chr2 223894683 223894871 + 1.83333 NA intron (NM_020830, intron 7 of 11) (CA)n|Simple_repeat|Simple_repeat 50558 NM_020830 57590 Hs.368359 NM_020830 ENSG00000085449 WDFY1 FENS-1|FENS1|WDF1|ZFYVE17 WD repeat and FYVE domain containing 1 protein-coding 458.166 chr6 39930512 39930948 + 1.83333 NA intron (NM_001358530, intron 1 of 10) intron (NM_001358530, intron 1 of 10) -3014 NM_005943 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 432.5 chr7 43703292 43703717 + 1.83333 NA intron (NR_163914, intron 1 of 8) L1PA15|LINE|L1 26019 NM_001371309 228.333-34 chr6 77414891 77415058 + 1.83333 NA Intergenic Tigger1|DNA|TcMar-Tigger 49048 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 235.5-27 chr3 83416592 83416748 + 1.83333 NA Intergenic Intergenic 1430528 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 499.833-2 chr17 71329750 71330176 + 1.83333 NA Intergenic Intergenic -127784 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 334-4 chr19 46656610 46656833 + 1.83333 NA intron (NM_145056, intron 1 of 3) L1MC4a|LINE|L1 -2003 NM_001301046 147906 Hs.515490 NM_145056 ENSG00000197380 DACT3 DAPPER3|RRR1 dishevelled binding antagonist of beta catenin 3 protein-coding 494.499 chr7 93657087 93657547 + 1.83333 NA Intergenic L1MEf|LINE|L1 -59611 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 284.333-2 chr14 73119658 73119972 + 1.83333 NA 3' UTR (NM_021239, exon 19 of 19) 3' UTR (NM_021239, exon 19 of 19) -16692 NM_000021 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 178.166-2 chr2 128675263 128675469 + 1.83333 NA Intergenic L1MD2|LINE|L1 -189234 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 357-3 chr5 122195920 122196234 + 1.83333 NA Intergenic Intergenic 35901 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 479.499 chr13 87497751 87498318 + 1.83333 NA intron (NR_033829, intron 2 of 5) MIRc|SINE|MIR 120706 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 239-11 chr3 136792909 136793089 + 1.83333 NA Intergenic Intergenic -26020 NM_001097600 80723 Hs.477692 NM_025246 ENSG00000168917 SLC35G2 TMEM22 solute carrier family 35 member G2 protein-coding 419-4 chr7 13191845 13192356 + 1.83333 NA Intergenic MIR|SINE|MIR 504467 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 465.167 chr6 44896393 44896736 + 1.83333 NA intron (NM_181356, intron 12 of 12) intron (NM_181356, intron 12 of 12) 301206 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 365-3 chr9 9262580 9262921 + 1.83333 NA intron (NM_002839, intron 9 of 45) intron (NM_002839, intron 9 of 45) 404732 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 202.166-2 chr17 61810695 61810821 + 1.83333 NA intron (NM_032043, intron 6 of 19) intron (NM_032043, intron 6 of 19) 52801 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 390.166-2 chr4 80757186 80757534 + 1.83333 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -273348 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 281-2 chr1 197369519 197369778 + 1.83333 NA intron (NM_001193640, intron 3 of 9) L2a|LINE|L2 101396 NM_201253 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 226.5 chr1 78429028 78429228 + 1.83333 NA Intergenic MER121|DNA|hAT? -61846 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 412.667-2 chr11 59617053 59617383 + 1.83333 NA Intergenic Intergenic -1444 NM_002556 5007 Hs.597091 NM_002556 ENSG00000110048 OSBP OSBP1 oxysterol binding protein protein-coding 148.333-6 chr1 166658701 166658829 + 1.83333 NA Intergenic Intergenic 54849 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 281.167-4 chr14 70262035 70262264 + 1.83333 NA Intergenic L1ME3E|LINE|L1 -14348 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 315.167-3 chr10 98863858 98864157 + 1.83333 NA intron (NM_021828, intron 3 of 11) Charlie23a|DNA|hAT-Charlie 60561 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 282.166 chr10 16859961 16860148 + 1.83333 NA intron (NM_001081, intron 59 of 66) L1MEg|LINE|L1 -42600 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 498.166-2 chr8 108668969 108669242 + 1.83333 NA intron (NR_136411, intron 1 of 3) MamGypLTR1a|LTR|Gypsy 118489 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 239.167-13 chr5 123917283 123917488 + 1.83333 NA Intergenic Intergenic 371968 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 243.5-23 chr5 107933582 107933857 + 1.83333 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -262782 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 186.5-56 chr5 168850550 168850721 + 1.83333 NA intron (NM_003062, intron 5 of 35) intron (NM_003062, intron 5 of 35) -82380 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 313.499 chr2 161951866 161952087 + 1.83333 NA intron (NM_001354443, intron 19 of 25) intron (NM_001354443, intron 19 of 25) 122239 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 172.666-6 chr5 129647420 129647595 + 1.83333 NA intron (NM_133638, intron 11 of 22) intron (NM_133638, intron 11 of 22) -100587 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 351.501 chr18 69110860 69111168 + 1.83333 NA Intergenic Intergenic -289874 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 447.334 chr2 64551669 64552115 + 1.83333 NA exon (NM_203437, exon 2 of 10) exon (NM_203437, exon 2 of 10) 26379 NR_039633 100616419 NR_039633 ENSG00000283204 MIR4434 - microRNA 4434 ncRNA 291.834-4 chr21 28704156 28704588 + 1.83333 NA Intergenic Intergenic 165054 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 304.001-2 chr22 25482069 25482366 + 1.83333 NA Intergenic LTR81B|LTR|Gypsy 26571 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 221.333-15 chr2 225955171 225955504 + 1.83333 NA Intergenic L1MC|LINE|L1 -187457 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 229.333-6 chr10 91256848 91257065 + 1.83333 NA intron (NM_001256549, intron 6 of 9) L1MB7|LINE|L1 36293 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 260.499-2 chr9 25181796 25182030 + 1.83333 NA Intergenic L1PA16|LINE|L1 496945 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 278 chr1 94405702 94405977 + 1.83333 NA Intergenic L1MC5a|LINE|L1 -12538 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 242.333-18 chr5 173529306 173529562 + 1.83333 NA Intergenic AluSx1|SINE|Alu -50200 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 255.499-2 chr9 109213192 109213352 + 1.83333 NA intron (NM_019114, intron 17 of 25) intron (NM_019114, intron 17 of 25) -45981 NM_014334 23732 Hs.347537 NM_014334 ENSG00000260230 FRRS1L C9orf4|CG-6|CG6|EIEE37 ferric chelate reductase 1 like protein-coding 388.333 chr17 71431718 71431996 + 1.83333 NA Intergenic Intergenic -229678 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 466.833 chr12 70149505 70149835 + 1.83333 NA Intergenic Intergenic -93360 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 203.333-16 chr2 7409316 7409623 + 1.83333 NA Intergenic Intergenic -11792 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 289.666-3 chr3 89517903 89518207 + 1.83333 NA Intergenic Intergenic 410434 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 349.834 chr3 99529142 99529395 + 1.83333 NA Intergenic Intergenic -109326 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 254.167-11 chr3 24550013 24550308 + 1.83333 NA Intergenic L1M5|LINE|L1 -54452 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 346.667 chr1 195073577 195073900 + 1.83333 NA Intergenic Intergenic 1014977 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 359.333-3 chr5 101661074 101661370 + 1.83333 NA Intergenic Intergenic 635062 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 168-7 chr1 229605579 229605795 + 1.83333 NA intron (NM_001025247, intron 3 of 3) MLT2D|LTR|ERVL 20360 NM_014409 27097 Hs.270621 NM_014409 ENSG00000135801 TAF5L PAF65B TATA-box binding protein associated factor 5 like protein-coding 302.833-4 chr2 138299394 138299690 + 1.83333 NA Intergenic Intergenic 197658 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 405.667-2 chr8 87911773 87912062 + 1.83333 NA Intergenic L2c|LINE|L2 -37902 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 232.5-8 chr14 47344693 47344836 + 1.83333 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -1518 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 250.166-3 chr22 27058580 27058848 + 1.83333 NA intron (NM_001318329, intron 1 of 1) intron (NM_001318329, intron 1 of 1) 1804 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 250.5-16 chr21 23138550 23138846 + 1.83333 NA Intergenic Intergenic 59414 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 264.166 chr18 65949060 65949234 + 1.83333 NA Intergenic MIRc|SINE|MIR 198135 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 225.167-9 chr14 31189789 31189986 + 1.83333 NA intron (NM_015382, intron 2 of 42) MLT1G3|LTR|ERVL-MaLR 17906 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 304.666 chr12 59115225 59115442 + 1.83333 NA Intergenic L2b|LINE|L2 -194795 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 269.166-2 chr4 90979959 90980164 + 1.83333 NA intron (NM_001145065, intron 9 of 10) L2a|LINE|L2 745030 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 179-40 chr4 123090057 123090247 + 1.83333 NA intron (NM_001345856, intron 13 of 15) intron (NM_001345856, intron 13 of 15) 167074 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 226-20 chr5 50860079 50860312 + 1.83333 NA Intergenic L1MDa|LINE|L1 109992 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 261-22 chr6 133534797 133535047 + 1.83333 NA intron (NR_109982, intron 6 of 8) intron (NR_109982, intron 6 of 8) -286225 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 417.834-2 chr6 48954292 48954656 + 1.83333 NA Intergenic Intergenic 508779 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 214.166-2 chr14 23296593 23296729 + 1.83333 NA 3' UTR (NM_001276318, exon 5 of 5) 3' UTR (NM_001276318, exon 5 of 5) 6198 NM_001276318 90673 Hs.601513 NM_001276318 ENSG00000235194 PPP1R3E - protein phosphatase 1 regulatory subunit 3E protein-coding 324.333-2 chr11 60123960 60124201 + 1.83333 NA Intergenic L2|LINE|L2 35416 NM_000139 2206 Hs.386748 NM_000139 ENSG00000149534 MS4A2 APY|ATOPY|FCER1B|FCERI|IGEL|IGER|IGHER|MS4A1 membrane spanning 4-domains A2 protein-coding 283.666-3 chr5 107551902 107552059 + 1.83333 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 118957 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 352.666-3 chr8 73901241 73901591 + 1.83333 NA Intergenic MER65A|LTR|ERV1 22434 NR_147034 101926947 Hs.521636 NR_147034 LINC01617 C8orf23|NCRNA00249|XLOC_006844 long intergenic non-protein coding RNA 1617 ncRNA 251.167-8 chr2 164830329 164830576 + 1.83333 NA intron (NM_001278458, intron 2 of 16) intron (NM_001278458, intron 2 of 16) -10297 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 343.333 chr17 33312149 33312437 + 1.83333 NA intron (NM_001094, intron 1 of 9) LTR91|LTR|ERVL -19305 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 328.333-3 chr22 33759715 33760035 + 1.83333 NA intron (NM_133642, intron 2 of 14) intron (NM_133642, intron 2 of 14) 34889 NR_038950 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 360.5-7 chr3 173046295 173046684 + 1.83333 NA intron (NM_031955, intron 3 of 10) intron (NM_031955, intron 3 of 10) 94746 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 189.5-52 chr6 153365761 153365899 + 1.83333 NA Intergenic Intergenic -234548 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 431.666 chr2 31326168 31326649 + 1.83333 NA Intergenic L1ME3A|LINE|L1 88334 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 251.166-2 chr21 25104220 25104439 + 1.83333 NA Intergenic Intergenic 263779 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 419.167 chr10 95738558 95739027 + 1.83333 NA intron (NM_001098175, intron 1 of 9) intron (NM_001098175, intron 1 of 9) -16860 NM_001164181 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 348.5-4 chr4 43760443 43760731 + 1.83333 NA Intergenic L1MEg|LINE|L1 -256274 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 398-5 chr3 158622517 158623128 + 1.83333 NA Intergenic MER4-int|LTR|ERV1 -21706 NM_001308166 85476 Hs.518355 NM_024996 ENSG00000168827 GFM1 COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1|mtEF-G1 G elongation factor mitochondrial 1 protein-coding 317.333-7 chr5 167002646 167003056 + 1.83333 NA Intergenic Intergenic -70391 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 291-16 chr9 110558956 110559271 + 1.83333 NA intron (NM_153366, intron 1 of 47) L1MC|LINE|L1 20628 NM_153366 79987 Hs.522334 NM_153366 ENSG00000165124 SVEP1 C9orf13|CCP22|POLYDOM|SEL-OB|SELOB sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein-coding 300.5-9 chr4 34214064 34214382 + 1.83333 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 55524 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 296.333-3 chr12 39545751 39546016 + 1.83333 NA Intergenic Intergenic 73920 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 258.333-29 chr5 99967429 99967572 + 1.83333 NA Intergenic MLT2D|LTR|ERVL 420754 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 188.666-2 chr5 31693854 31693961 + 1.83333 NA intron (NM_178140, intron 1 of 24) MIRc|SINE|MIR 54776 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 316.833-4 chr11 105235238 105235481 + 1.83333 NA Intergenic L1PA16|LINE|L1 -95590 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 256-17 chr7 7693790 7694011 + 1.83333 NA intron (NM_002947, intron 2 of 7) intron (NM_002947, intron 2 of 7) 24707 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 426.334 chr10 62252406 62252807 + 1.83333 NA intron (NM_001282941, intron 2 of 4) L1MC4|LINE|L1 16238 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 266.333-10 chr4 101063123 101063328 + 1.83333 NA intron (NM_001130692, intron 8 of 11) intron (NM_001130692, intron 8 of 11) 177647 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 242.333-19 chr6 138665706 138665938 + 1.83333 NA Intergenic Intergenic -25846 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 215.833-8 chr17 27599698 27599900 + 1.83333 NA intron (NM_014238, intron 10 of 20) Tigger3b|DNA|TcMar-Tigger -31389 NR_024043 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 554.833 chr5 38442315 38442695 + 1.83333 NA intron (NM_182798, intron 12 of 16) intron (NM_182798, intron 12 of 16) -3041 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 295.666-3 chr7 89425548 89425755 + 1.83333 NA Intergenic (T)n|Simple_repeat|Simple_repeat -629914 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 317.334 chr1 114010213 114010425 + 1.66667 NA Intergenic Tigger3b|DNA|TcMar-Tigger 30845 NM_001286352 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 256.5-32 chr7 39268916 39269085 + 1.66667 NA intron (NM_001370959, intron 4 of 9) MER20B|DNA|hAT-Charlie 60134 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 452.667 chr8 92149988 92150341 + 1.66667 NA Intergenic Intergenic -46779 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 307.5-4 chr15 65109530 65110040 + 1.66667 NA Intergenic L1M5|LINE|L1 -3426 NM_001163692 390595 Hs.659256 NM_001163692 ENSG00000246922 UBAP1L UBAP-1L ubiquitin associated protein 1 like protein-coding 288-15 chr7 104586448 104586803 + 1.66667 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 217467 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 330.666-5 chr8 108765962 108766329 + 1.66667 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 21449 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 137.333-12 chr10 81829809 81829905 + 1.66667 NA Intergenic Intergenic -45337 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 252.5-11 chr17 59152547 59152831 + 1.66667 NA intron (NM_182620, intron 1 of 3) intron (NM_182620, intron 1 of 3) -1468 NR_029842 407027 NR_029842 ENSG00000207996 MIR301A MIR301|MIRN301|MIRN301A|mir-301a microRNA 301a ncRNA 575.167 chr2 42293444 42294392 + 1.66667 NA intron (NM_001145076, intron 10 of 21) intron (NM_001145076, intron 10 of 21) 66120 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 199.5-22 chr2 241018473 241018677 + 1.66667 NA intron (NM_001080437, intron 1 of 31) HERVL40-int|LTR|ERVL 19957 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 174.334-2 chr2 170493212 170493435 + 1.66667 NA intron (NM_001083615, intron 25 of 33) intron (NM_001083615, intron 25 of 33) -142380 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 237.334-2 chr11 85689353 85689693 + 1.66667 NA Intergenic AluJo|SINE|Alu -3328 NM_152723 220388 Hs.376241 NM_152723 ENSG00000179071 CCDC89 - coiled-coil domain containing 89 protein-coding 462.834 chr12 92526703 92527386 + 1.66667 NA Intergenic Tigger4b|DNA|TcMar-Tigger 60365 NR_144532 100507616 Hs.339918 NR_144532 LINC02397 - long intergenic non-protein coding RNA 2397 ncRNA 373.167-3 chr21 29709667 29710181 + 1.66667 NA intron (NM_000830, intron 1 of 16) L1ME4a|LINE|L1 -38251 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 154-39 chr2 80017373 80017493 + 1.66667 NA intron (NM_001282598, intron 7 of 17) (TA)n|Simple_repeat|Simple_repeat -150850 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 144-26 chr18 9209822 9209941 + 1.66667 NA intron (NM_001204056, intron 4 of 11) intron (NM_001204056, intron 4 of 11) 72318 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 208-13 chr14 79338725 79338904 + 1.66667 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 59434 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 342.334-4 chr8 88714371 88714658 + 1.66667 NA Intergenic MER34A|LTR|ERV1 -387031 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 189-24 chr3 22984382 22984606 + 1.66667 NA Intergenic L3|LINE|CR1 218084 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 278.667-6 chr12 2412429 2412673 + 1.66667 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 142775 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 271.667-8 chr2 77279199 77279368 + 1.66667 NA intron (NR_146416, intron 1 of 1) L3|LINE|CR1 243093 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 267-8 chr4 62391369 62391576 + 1.66667 NA Intergenic Intergenic -229707 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 461.167 chr2 117557249 117558166 + 1.66667 NA Intergenic L2c|LINE|L2 -256984 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 323.334-7 chr4 44368790 44369256 + 1.66667 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 79786 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 199.334-2 chr2 47229540 47229705 + 1.66667 NA intron (NR_110207, intron 1 of 2) intron (NR_110207, intron 1 of 2) -52686 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 309.667-4 chr8 26666551 26666823 + 1.66667 NA Intergenic L1ME2|LINE|L1 88282 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 530.167 chr8 129207473 129208131 + 1.66667 NA Intergenic Intergenic 33438 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 234.833-12 chr18 4323565 4323822 + 1.66667 NA intron (NM_001242761, intron 1 of 11) L1PA15|LINE|L1 59091 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 222.5-9 chr19 34923584 34923801 + 1.66667 NA non-coding (NR_110749, exon 2 of 3) non-coding (NR_110749, exon 2 of 3) 3134 NR_110749 102723513 Hs.149702 NR_110749 ZNF30-AS1 - ZNF30 antisense RNA 1 ncRNA 392.667 chr1 190932033 190932312 + 1.66667 NA Intergenic Intergenic 296326 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 285.834-2 chr2 10584385 10584619 + 1.66667 NA intron (NR_048552, intron 18 of 19) intron (NR_048552, intron 18 of 19) 105473 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 191.667-52 chr7 42553528 42553710 + 1.66667 NA Intergenic Intergenic 152828 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 366.667-5 chr7 113691345 113691736 + 1.66667 NA Intergenic Intergenic 227469 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 127-75 chr4 29080878 29080992 + 1.66667 NA Intergenic Intergenic 84151 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 187-19 chr19 53578485 53578698 + 1.66667 NA 3' UTR (NM_018555, exon 7 of 7) 3' UTR (NM_018555, exon 7 of 7) 23284 NM_001317119 55422 Hs.185674 NM_018555 ENSG00000130844 ZNF331 RITA|ZNF361|ZNF463 zinc finger protein 331 protein-coding 239-20 chr8 139668051 139668295 + 1.66667 NA intron (NR_104210, intron 1 of 3) L1P3|LINE|L1 34950 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 611.668 chr14 19878281 19878927 + 1.66667 NA Intergenic Intergenic 2336 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 402.333 chr4 32355026 32355515 + 1.66667 NA Intergenic Intergenic 4232 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 341.5-5 chr4 137400029 137400336 + 1.66667 NA Intergenic Intergenic 132312 NM_019035 54510 Hs.591691 NM_019035 ENSG00000189184 PCDH18 PCDH68L protocadherin 18 protein-coding 438.668 chr16 71336026 71336330 + 1.66667 NA Intergenic L1PA16|LINE|L1 -22535 NM_007088 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 279.001-3 chr7 90770129 90770309 + 1.66667 NA intron (NM_012395, intron 3 of 13) intron (NM_012395, intron 3 of 13) 60403 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 237.667-9 chr4 60304950 60305181 + 1.66667 NA Intergenic Intergenic -617554 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 287.667-11 chr5 53516657 53517050 + 1.66667 NA Intergenic L1PA16|LINE|L1 36224 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 250.166-2 chr21 32596826 32597106 + 1.66667 NA intron (NM_001350338, intron 5 of 7) intron (NM_001350338, intron 5 of 7) -11443 NM_144659 140290 Hs.728804 NM_018277 ENSG00000242220 TCP10L C21orf77|PRED77|TCP10A-1|TCP10A-2 t-complex 10 like protein-coding 286.667-13 chr4 146161683 146161977 + 1.66667 NA Intergenic MIR|SINE|MIR -13888 NM_007080 11157 Hs.190520 NM_007080 ENSG00000164167 LSM6 YDR378C LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 426.667 chr2 143807165 143807696 + 1.66667 NA Intergenic Intergenic -129637 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 288.334 chr11 100953500 100953751 + 1.66667 NA intron (NM_001367945, intron 14 of 25) intron (NM_001367945, intron 14 of 25) 19351 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 146.667-23 chr12 85209922 85210012 + 1.66667 NA intron (NM_001079910, intron 24 of 26) intron (NM_001079910, intron 24 of 26) -70253 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 360.334-5 chr5 117098317 117098635 + 1.66667 NA Intergenic Intergenic -317036 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 263.5-20 chr5 18424555 18424881 + 1.66667 NA Intergenic MSTA|LTR|ERVL-MaLR 617444 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 274.667-4 chr12 16971284 16971660 + 1.66667 NA Intergenic L1M2|LINE|L1 -17275 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 274.834 chr14 47557416 47557766 + 1.66667 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 117363 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 258.167-15 chr6 140938445 140938701 + 1.66667 NA Intergenic Intergenic 254759 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 285.334-4 chr15 56428485 56428772 + 1.66667 NA TTS (NM_018365) TTS (NM_018365) 36509 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 255.833-7 chr2 41293030 41293310 + 1.66667 NA Intergenic Intergenic -584385 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 170.333-59 chr5 176775458 176775570 + 1.66667 NA Intergenic Intergenic 32309 NR_108030 102577424 Hs.349025 NR_108030 ENSG00000248859 LINC01574 HI-LNC12 long intergenic non-protein coding RNA 1574 ncRNA 580.001 chr2 108783633 108784270 + 1.66667 NA 3' UTR (NM_006267, exon 29 of 29) 3' UTR (NM_006267, exon 29 of 29) -2799 NM_001351544 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 547.668 chr10 53077168 53077543 + 1.66667 NA Intergenic Intergenic -305655 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 303.334-8 chr6 142142901 142143171 + 1.66667 NA intron (NM_001324307, intron 1 of 3) AluJo|SINE|Alu 4086 NM_001324307 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 424.333-2 chr8 69875711 69876343 + 1.66667 NA Intergenic L1MC5a|LINE|L1 -41049 NM_030958 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 355.667-6 chr22 42818798 42819194 + 1.66667 NA intron (NM_001142293, intron 8 of 14) AluSx1|SINE|Alu 38277 NM_014570 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 194-13 chr12 46943858 46944032 + 1.66667 NA Intergenic Intergenic -117948 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 456.667-2 chr15 62517549 62518024 + 1.66667 NA Intergenic Intergenic 127395 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 379.834 chr12 81633701 81634094 + 1.66667 NA intron (NM_001220474, intron 2 of 30) intron (NM_001220474, intron 2 of 30) -35526 NM_001220478 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 227.667-12 chr2 65512516 65512744 + 1.66667 NA Intergenic HAL1|LINE|L1 -80031 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 313.501-2 chr10 61268206 61268451 + 1.66667 NA Intergenic MLT2B1|LTR|ERVL -184311 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 305.501 chr18 75977259 75977471 + 1.66667 NA Intergenic Intergenic -145633 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 201.834-7 chr9 103089539 103089760 + 1.66667 NA Intergenic MER2B|DNA|TcMar-Tigger 94316 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 343.667-7 chr6 3968794 3969052 + 1.66667 NA Intergenic Intergenic -52377 NR_146785 8899 Hs.159014 NM_003913 ENSG00000112739 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 280.334-4 chr7 26416074 26416401 + 1.66667 NA intron (NR_148500, intron 2 of 5) intron (NR_148500, intron 2 of 5) -16819 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 277.999 chr1 215155340 215155667 + 1.66667 NA intron (NM_001017424, intron 3 of 6) intron (NM_001017424, intron 3 of 6) 72766 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 281.5 chr10 18021113 18021423 + 1.66667 NA intron (NM_001282734, intron 11 of 11) L1PA15|LINE|L1 -10706 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 262.334-4 chr5 73052863 73053217 + 1.66667 NA intron (NM_001146032, intron 12 of 24) intron (NM_001146032, intron 12 of 24) -67535 NM_173490 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 339.834 chr12 1596005 1596208 + 1.66667 NA Intergenic Intergenic -1525 NM_152441 144699 Hs.367956 NM_152441 ENSG00000171823 FBXL14 Fbl14 F-box and leucine rich repeat protein 14 protein-coding 184-29 chr2 204734897 204735019 + 1.66667 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 189483 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 265-5 chr11 98497832 98498120 + 1.66667 NA Intergenic L2|LINE|L2 -522973 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 211.667-27 chr3 64471769 64472012 + 1.66667 NA Intergenic Intergenic -89456 NR_110151 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 525.333 chr14 50475362 50475909 + 1.66667 NA intron (NM_198794, intron 8 of 31) AluJr|SINE|Alu 56934 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 224.501-2 chr16 83155047 83155205 + 1.66667 NA intron (NM_001220490, intron 3 of 12) intron (NM_001220490, intron 3 of 12) -164828 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 231.667-4 chr11 14618045 14618214 + 1.66667 NA intron (NM_148976, intron 1 of 10) intron (NM_148976, intron 1 of 10) 25505 NM_148976 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 243-10 chr12 41101891 41102110 + 1.66667 NA Intergenic Kanga1a|DNA|TcMar-Tc2 -86320 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 315.333-7 chr3 121838456 121838837 + 1.66667 NA intron (NM_018456, intron 1 of 5) intron (NM_018456, intron 1 of 5) 3437 NM_018456 55840 Hs.477325 NM_018456 ENSG00000145088 EAF2 BM040|TRAITS|U19 ELL associated factor 2 protein-coding 192.5-56 chr8 119139664 119139850 + 1.66667 NA Intergenic L1ME2|LINE|L1 -68606 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 428.334-2 chr13 101413196 101413630 + 1.66667 NA intron (NM_001350749, intron 1 of 43) L1ME4c|LINE|L1 3095 NM_001350751 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 244.333-21 chr5 16216994 16217156 + 1.66667 NA Intergenic Intergenic 36834 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 349.334-3 chr6 141671472 141671722 + 1.66667 NA Intergenic L1MC1|LINE|L1 417202 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 280.5-3 chr10 74085110 74085478 + 1.66667 NA intron (NM_014000, intron 8 of 21) intron (NM_014000, intron 8 of 21) 65534 NM_001320265 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 281-5 chr12 116959347 116959743 + 1.66667 NA intron (NM_153348, intron 4 of 10) intron (NM_153348, intron 4 of 10) 27792 NR_103809 100506551 Hs.657861 NR_103809 ENSG00000257279 LOC100506551 - uncharacterized LOC100506551 ncRNA 247.667-18 chr3 64008672 64009009 + 1.66667 NA intron (NR_038286, intron 1 of 2) intron (NR_038286, intron 1 of 2) 4818 NR_038286 100507062 Hs.152536 NR_038286 ENSG00000239653 PSMD6-AS2 - PSMD6 antisense RNA 2 ncRNA 291.834-2 chr2 122231095 122231484 + 1.66667 NA Intergenic Intergenic 475638 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 240.5-19 chr6 48575097 48575404 + 1.66667 NA Intergenic Intergenic -506561 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 408.501 chr11 24579430 24579915 + 1.66667 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 82619 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 310-12 chr9 105143148 105143365 + 1.66667 NA Intergenic Intergenic -101349 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 229.167-17 chr15 95811890 95812441 + 1.66667 NA Intergenic Intergenic 315676 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 428.667-3 chr3 165235284 165235571 + 1.66667 NA intron (NR_125764, intron 1 of 5) L1MD2|LINE|L1 28467 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 278.167-9 chr3 134566729 134567014 + 1.66667 NA intron (NM_001353123, intron 11 of 11) L1MB7|LINE|L1 80698 NM_001353121 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 198-31 chr2 166837027 166837173 + 1.66667 NA Intergenic Intergenic -51387 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 485 chr2 212471602 212472127 + 1.66667 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) -45504 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 368-2 chr5 39197385 39197799 + 1.66667 NA intron (NM_001243093, intron 2 of 18) intron (NM_001243093, intron 2 of 18) 21971 NM_001465 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 292.834-8 chr6 39649219 39649614 + 1.66667 NA intron (NM_001289020, intron 3 of 21) intron (NM_001289020, intron 3 of 21) 75992 NM_001289021 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 302.834-2 chr2 229810453 229810775 + 1.66667 NA intron (NM_001348330, intron 15 of 41) intron (NM_001348330, intron 15 of 41) -96059 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 266.001-3 chr7 88992047 88992499 + 1.66667 NA intron (NM_181646, intron 1 of 3) LTR81B|LTR|Gypsy -196536 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 254.001-3 chr8 88704720 88704901 + 1.66667 NA Intergenic L2c|LINE|L2 -377327 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 260-19 chr5 39322833 39323086 + 1.66667 NA intron (NM_001737, intron 5 of 10) MER2|DNA|TcMar-Tigger 41536 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 147-48 chr3 7969316 7969472 + 1.66667 NA intron (NR_110131, intron 2 of 3) MIRb|SINE|MIR 46913 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 192.667-49 chr7 29393586 29393729 + 1.66667 NA intron (NM_001293072, intron 3 of 12) intron (NM_001293072, intron 3 of 12) -86055 NM_001293079 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 240.167-2 chr1 94975311 94975606 + 1.66667 NA non-coding (NR_131032, exon 3 of 3) non-coding (NR_131032, exon 3 of 3) 47430 NR_033998 729970 Hs.297988 NR_033998 ENSG00000235501 LOC729970 - hCG2028352-like ncRNA 415.167-3 chr3 44328647 44329077 + 1.66667 NA intron (NM_001145030, intron 19 of 19) intron (NM_001145030, intron 19 of 19) -9257 NM_001029840 285343 Hs.55131 NM_173826 ENSG00000179152 TCAIM C3orf23|TOAG-1|TOAG1 T cell activation inhibitor, mitochondrial protein-coding 267.834 chr16 68555716 68556004 + 1.66667 NA intron (NR_130976, intron 2 of 4) intron (NR_130976, intron 2 of 4) 16569 NM_001305207 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 232.834-2 chr2 217587955 217588193 + 1.66667 NA intron (NR_026597, intron 2 of 12) L1MEf|LINE|L1 168519 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 327.333-6 chr3 103999445 103999756 + 1.66667 NA Intergenic Intergenic -475484 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 209.167-21 chr20 32708019 32708267 + 1.66667 NA intron (NM_001099339, intron 3 of 8) intron (NM_001099339, intron 3 of 8) -34202 NM_182584 284805 Hs.353262 NM_182584 ENSG00000198547 C20orf203 - chromosome 20 open reading frame 203 protein-coding 213.667-27 chr4 69970349 69970631 + 1.66667 NA Intergenic Intergenic -9479 NM_001302770 1447 Hs.2242 NM_001891 ENSG00000135222 CSN2 CASB casein beta protein-coding 455.667 chr9 16953632 16954025 + 1.66667 NA Intergenic Intergenic -83158 NM_001317940 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 231.667-8 chr12 42498679 42498877 + 1.66667 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) -14768 NM_001144882 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 414.5-2 chr8 77248504 77248873 + 1.66667 NA Intergenic LTR49|LTR|ERV1 -202009 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 192.333-60 chr9 99342058 99342284 + 1.66667 NA Intergenic Intergenic 33086 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 270.667-13 chr20 11092635 11092939 + 1.66667 NA Intergenic Intergenic 66243 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 292.5-3 chr10 53655410 53655893 + 1.66667 NA Intergenic L1PA3|LINE|L1 -830579 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 209.334-2 chr12 124022825 124022984 + 1.66667 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 49689 NM_001204298 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 297.501-2 chr17 60305371 60305561 + 1.66667 NA intron (NM_032582, intron 2 of 33) MSTB|LTR|ERVL-MaLR -73821 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 191.667-22 chr2 102313146 102313334 + 1.66667 NA intron (NM_001282408, intron 1 of 6) MIRb|SINE|MIR 1677 NM_016232 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 320-7 chr8 84735048 84735376 + 1.66667 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 29285 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 155.667-23 chr12 840830 840988 + 1.66667 NA intron (NM_001184985, intron 4 of 27) OldhAT1|DNA|hAT-Ac 87986 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 305.667-13 chr6 85122260 85122494 + 1.66667 NA Intergenic Intergenic 267809 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 376.667-3 chr12 126672527 126672897 + 1.66667 NA intron (NR_110034, intron 1 of 2) L1MA4A|LINE|L1 17606 NR_110035 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 327.501-3 chr5 24537302 24537655 + 1.66667 NA exon (NM_001317224, exon 3 of 12) exon (NM_001317224, exon 3 of 12) 107500 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 318.501 chr12 20753971 20754219 + 1.66667 NA TTS (NM_001145945) TTS (NM_001145945) -56610 NM_019844 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 345-2 chr6 139179047 139179302 + 1.66667 NA 3' UTR (NM_016217, exon 4 of 4) 3' UTR (NM_016217, exon 4 of 4) 44094 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 242.667-9 chr14 49103686 49104052 + 1.66667 NA Intergenic Intergenic 482511 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 220.334-4 chr17 62973353 62973552 + 1.66667 NA intron (NM_025185, intron 1 of 25) L2c|LINE|L2 7217 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 241.667-15 chr2 42842648 42842903 + 1.66667 NA Intergenic Intergenic -50192 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 237.667-22 chr9 34859548 34859775 + 1.66667 NA Intergenic L1MEc|LINE|L1 -21075 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 165.833-20 chr15 24705581 24705726 + 1.66667 NA Intergenic MER34-int|LTR|ERV1 30259 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 237.333-37 chr8 78191673 78191927 + 1.66667 NA Intergenic Intergenic -324540 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 216.667-30 chr4 18302598 18302756 + 1.66667 NA Intergenic Intergenic -280802 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 316.167-5 chr5 117013537 117013947 + 1.66667 NA Intergenic L1PA13|LINE|L1 -251533 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 309.666-2 chr2 129182031 129182254 + 1.66667 NA Intergenic L1MD1|LINE|L1 91749 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 316.667-2 chr11 17687887 17688216 + 1.66667 NA Intergenic Intergenic 8888 NR_132279 102723330 Hs.471111 NR_132279 ENSG00000255335 LINC02729 - long intergenic non-protein coding RNA 2729 ncRNA 350.667-7 chr5 15560314 15560608 + 1.66667 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 54541 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 353.168 chr14 51531681 51531953 + 1.66667 NA intron (NM_001042481, intron 1 of 14) MER63C|DNA|hAT-Blackjack 42689 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 378.668 chr5 74254671 74254932 + 1.66667 NA Intergenic L1MA4A|LINE|L1 53524 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 306.667-3 chr14 50300918 50301210 + 1.66667 NA intron (NM_024884, intron 3 of 9) intron (NM_024884, intron 3 of 9) -1118 NR_039726 100616261 NR_039726 ENSG00000264712 MIR4504 - microRNA 4504 ncRNA 235-10 chr12 127601003 127601289 + 1.66667 NA Intergenic MER67C|LTR|ERV1 35321 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 380-6 chr7 66338000 66338455 + 1.66667 NA intron (NM_003596, intron 3 of 5) L1M1|LINE|L1 62181 NR_026873 285908 Hs.50755 NM_181722 ENSG00000179406 LINC00174 NCRNA00174 long intergenic non-protein coding RNA 174 ncRNA 299.001 chr11 122335742 122335974 + 1.66667 NA intron (NR_137179, intron 1 of 4) intron (NR_137179, intron 1 of 4) -26371 NR_137193 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 203.333-33 chr3 190872217 190872407 + 1.66667 NA Intergenic Intergenic -5618 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 369.001 chr3 121470763 121471054 + 1.66667 NA intron (NM_199420, intron 22 of 29) AluJb|SINE|Alu 75080 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 243.667-2 chr1 69514074 69514383 + 1.66667 NA Intergenic Intergenic -53106 NM_001366837 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 428.501 chr2 15635896 15636851 + 1.66667 NA Intergenic MARNA|DNA|TcMar-Mariner 44505 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 133.334-9 chr8 78275757 78275854 + 1.66667 NA Intergenic Intergenic -240535 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 198-65 chrX 45070537 45070692 + 1.66667 NA intron (NR_111960, intron 16 of 27) intron (NR_111960, intron 16 of 27) 130262 NM_024689 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 189.667-12 chr12 42157525 42157657 + 1.66667 NA non-coding (NR_135139, exon 7 of 7) non-coding (NR_135139, exon 7 of 7) -12717 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 351.334-2 chr14 82200903 82201277 + 1.66667 NA Intergenic Intergenic -441542 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 310.834-2 chr7 39233180 39233375 + 1.66667 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 95857 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 371.999 chr9 71207478 71208001 + 1.66667 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -86118 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 223-34 chr8 87928721 87928909 + 1.66667 NA Intergenic Intergenic -54800 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 363.334 chr15 47705391 47705685 + 1.66667 NA intron (NM_001198999, intron 4 of 19) intron (NM_001198999, intron 4 of 19) -11967 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 222.5-37 chr9 110163075 110163412 + 1.66667 NA intron (NM_007203, intron 10 of 10) L2a|LINE|L2 37742 NM_001136562 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 320.667-5 chr17 56719196 56719867 + 1.66667 NA Intergenic L2b|LINE|L2 114389 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 399.834-2 chr14 54419833 54420139 + 1.66667 NA intron (NM_001330173, intron 8 of 8) intron (NM_001330173, intron 8 of 8) 21388 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 364.999 chr12 19132963 19133537 + 1.66667 NA intron (NM_019012, intron 3 of 25) intron (NM_019012, intron 3 of 25) 3517 NM_001256470 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 334.167 chr17 44665539 44665833 + 1.66667 NA intron (NM_001145080, intron 4 of 7) intron (NM_001145080, intron 4 of 7) 9218 NM_001145080 284071 Hs.349758 NM_001033659 ENSG00000180336 MEIOC C17orf104 meiosis specific with coiled-coil domain protein-coding 224.167-3 chr1 201493874 201494088 + 1.66667 NA intron (NM_001193570, intron 2 of 5) intron (NM_001193570, intron 2 of 5) 2592 NM_001193572 1465 Hs.108080 NM_004078 ENSG00000159176 CSRP1 CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141|HEL-S-286 cysteine and glycine rich protein 1 protein-coding 228.334-7 chr5 53298920 53299128 + 1.66667 NA Intergenic L1PA13|LINE|L1 -181605 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 370.834-2 chr5 53216675 53217144 + 1.66667 NA Intergenic Intergenic 107067 NR_104654 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 401-3 chr7 103673266 103673675 + 1.66667 NA intron (NM_005045, intron 11 of 64) L1MEh|LINE|L1 -227263 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 294.333-9 chr2 106070091 106070420 + 1.66667 NA intron (NM_032411, intron 1 of 3) MER94|DNA|hAT-Blackjack 4567 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 424.667-3 chr7 39127064 39127666 + 1.66667 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -113798 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 319.167-3 chr2 51042663 51042999 + 1.66667 NA intron (NR_135237, intron 1 of 10) L1ME3|LINE|L1 10230 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 402.5 chr7 11663252 11663584 + 1.66667 NA intron (NM_015204, intron 1 of 26) L1MEg|LINE|L1 168780 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 313.667-9 chr20 23385788 23386145 + 1.66667 NA intron (NM_001283026, intron 6 of 9) L1MB7|LINE|L1 21603 NM_001317019 64412 Hs.709462 NM_022482 ENSG00000125812 GZF1 JLSM|ZBTB23|ZNF336 GDNF inducible zinc finger protein 1 protein-coding 207.333-46 chr6 53940489 53940705 + 1.66667 NA intron (NR_125842, intron 1 of 3) L1MA9|LINE|L1 10615 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 324.834 chr2 37492152 37492455 + 1.66667 NA Intergenic L1PA13|LINE|L1 147673 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 208.667-20 chr15 27257190 27257561 + 1.66667 NA intron (NM_001270873, intron 3 of 5) L1M2|LINE|L1 -96056 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 177.667-45 chr2 233570335 233570532 + 1.66667 NA Intergenic AluSq2|SINE|Alu -3651 NM_001365479 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 290 chr10 25561051 25561240 + 1.66667 NA intron (NM_020752, intron 6 of 10) intron (NM_020752, intron 6 of 10) -90567 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 305.834-4 chrX 88677632 88677868 + 1.66667 NA Intergenic Intergenic -69475 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 636.334 chr8 118589318 118589831 + 1.66667 NA intron (NR_109794, intron 1 of 4) intron (NR_109794, intron 1 of 4) -31427 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 219.333-38 chr7 113771261 113771483 + 1.66667 NA Intergenic Intergenic 147637 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 247.167-24 chr9 32305333 32305674 + 1.66667 NA Intergenic Intergenic -79100 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 255.334 chr1 163609951 163610333 + 1.66667 NA Intergenic Intergenic -186951 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 171.667-83 chr7 134641155 134641286 + 1.66667 NA Intergenic Intergenic -5559 NM_199186 669 Hs.198365 NM_001724 ENSG00000172331 BPGM DPGM|ECYT8 bisphosphoglycerate mutase protein-coding 309.833 chr17 30405448 30405763 + 1.66667 NA intron (NM_001304, intron 2 of 20) L1MC5|LINE|L1 25127 NM_001199775 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 374.999 chr6 92524763 92525213 + 1.66667 NA Intergenic Intergenic -834560 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 169.667-44 chr20 9779750 9779870 + 1.66667 NA intron (NM_177990, intron 1 of 9) intron (NM_177990, intron 1 of 9) 59266 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 487.501 chr6 36154477 36154865 + 1.66667 NA Intergenic L1M4a2|LINE|L1 24158 NR_072996 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 225.334-5 chr4 185334823 185334959 + 1.66667 NA intron (NM_001317781, intron 10 of 18) intron (NM_001317781, intron 10 of 18) 44107 NM_018409 55805 Hs.558513 NM_018409 ENSG00000109771 LRP2BP - LRP2 binding protein protein-coding 291.334-3 chr13 37640444 37640869 + 1.66667 NA intron (NM_001135956, intron 7 of 10) intron (NM_001135956, intron 7 of 10) -41812 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 291.501-3 chr6 162251714 162251965 + 1.66667 NA intron (NM_004562, intron 3 of 11) L1ME4a|LINE|L1 -475293 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 188-46 chr5 62686560 62686729 + 1.66667 NA Intergenic MLT1H|LTR|ERVL-MaLR 107825 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 633.001 chr5 118623499 118624267 + 1.66667 NA intron (NR_104998, intron 4 of 4) (AT)n|Simple_repeat|Simple_repeat 27695 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 474.834 chr17 62340693 62341319 + 1.66667 NA Intergenic L2c|LINE|L2 -29212 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 365-2 chr14 65059511 65059814 + 1.66667 NA intron (NM_002028, intron 11 of 11) intron (NM_002028, intron 11 of 11) 14974 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 363.167 chr13 37749280 37749608 + 1.66667 NA intron (NM_003306, intron 2 of 10) intron (NM_003306, intron 2 of 10) 120981 NM_001354799 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 339.5-3 chr14 84043796 84044262 + 1.66667 NA Intergenic MER4B|LTR|ERV1 -1227903 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 207.5-25 chr21 31579972 31580176 + 1.66667 NA Intergenic Intergenic 20841 NM_001321023 150051 Hs.708976 NM_001321023 LOC150051 - uncharacterized LOC150051 protein-coding 227.5 chr1 78018345 78018584 + 1.66667 NA TTS (NM_001317099) TTS (NM_001317099) 13525 NM_007034 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding 291-7 chr2 183721550 183721848 + 1.66667 NA Intergenic L1ME3|LINE|L1 597256 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 248.167-14 chr2 108129245 108129510 + 1.66667 NA Intergenic Intergenic -76622 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 335.333-6 chr8 116356099 116356365 + 1.66667 NA Intergenic Intergenic -31173 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 408.834 chr12 59437676 59438055 + 1.66667 NA Intergenic L1MA3|LINE|L1 -158164 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 513.5 chr5 21639378 21640001 + 1.66667 NA Intergenic L1MC4|LINE|L1 180209 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 338.666 chr3 28872944 28873302 + 1.66667 NA Intergenic L1M1|LINE|L1 297845 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 146.334-7 chr8 86920237 86920485 + 1.66667 NA intron (NM_173538, intron 3 of 10) intron (NM_173538, intron 3 of 10) 53946 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 278.667-14 chr4 100714497 100714841 + 1.66667 NA Intergenic L1MC5|LINE|L1 -39556 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 363.167-4 chr6 27756092 27756542 + 1.66667 NA Intergenic Intergenic -5427 NR_038929 100131289 Hs.200573 NR_038929 LOC100131289 - uncharacterized LOC100131289 ncRNA 280-4 chr12 1407377 1407566 + 1.66667 NA intron (NR_027948, intron 16 of 19) AluJr|SINE|Alu -93020 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 209.334 chr11 131631496 131631789 + 1.66667 NA intron (NM_001352003, intron 1 of 8) HAL1b|LINE|L1 31914 NR_126159 101929637 Hs.730330 NM_207432 ENSG00000224795 NTM-AS1 C11orf39 NTM antisense RNA 1 ncRNA 427.501 chr16 68949583 68949898 + 1.66667 NA intron (NM_024562, intron 14 of 17) L1MB7|LINE|L1 106209 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 252.667-10 chr17 67495916 67496129 + 1.66667 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) -24437 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 424.001-2 chr2 183952694 183953005 + 1.66667 NA Intergenic Intergenic -426126 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 321.999 chr5 83568156 83568638 + 1.66667 NA intron (NM_001164098, intron 11 of 13) intron (NM_001164098, intron 11 of 13) -6083 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 300.334 chr14 40789868 40790144 + 1.66667 NA Intergenic THE1C|LTR|ERVL-MaLR -164705 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 316 chr13 58584326 58584595 + 1.66667 NA Intergenic Intergenic -351343 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 173.834-2 chr10 65773620 65773847 + 1.66667 NA Intergenic Intergenic 202308 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 237.167-3 chr10 122835232 122835414 + 1.66667 NA intron (NR_037912, intron 5 of 7) intron (NR_037912, intron 5 of 7) 10534 NM_022034 50624 Hs.647182 NM_022034 ENSG00000138161 CUZD1 ERG-1|ERG1|ITMAP1|UO-44 CUB and zona pellucida like domains 1 protein-coding 197.667-47 chr5 163938392 163938524 + 1.66667 NA Intergenic Cheshire|DNA|hAT-Charlie 432839 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 200-40 chr2 187985094 187985237 + 1.66667 NA Intergenic Intergenic 302526 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 230.667 chr1 151422909 151423118 + 1.66667 NA intron (NM_001194938, intron 9 of 17) intron (NM_001194938, intron 9 of 17) 19192 NM_207171 23126 Hs.489873 NM_015100 ENSG00000143442 POGZ MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m pogo transposable element derived with ZNF domain protein-coding 321.167-8 chr5 10478714 10479379 + 1.66667 NA TTS (NR_106747) TTS (NR_106747) 1009 NR_106747 102465138 NR_106747 ENSG00000277073 MIR6131 hsa-mir-6131 microRNA 6131 ncRNA 276.667-3 chr2 131009705 131009897 + 1.66667 NA intron (NM_001367493, intron 4 of 13) L1MEf|LINE|L1 83361 NM_001321748 130074 Hs.534679 NM_001009993 ENSG00000152102 FAM168B MANI family with sequence similarity 168 member B protein-coding 535 chr2 61083140 61083702 + 1.66667 NA intron (NM_001129993, intron 8 of 21) AluJr|SINE|Alu 17212 NM_001330436 84542 Hs.468653 NM_032506 ENSG00000162929 KIAA1841 - KIAA1841 protein-coding 307.167-5 chr8 128986892 128987212 + 1.66667 NA Intergenic L1MC4|LINE|L1 -21051 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 178.333-9 chr11 114247699 114247853 + 1.66667 NA intron (NM_006006, intron 6 of 6) intron (NM_006006, intron 6 of 6) -48037 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 144.334-2 chr17 68739833 68740001 + 1.66667 NA Intergenic L1ME3|LINE|L1 111763 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 336.667-3 chr17 69024889 69025130 + 1.66667 NA intron (NM_080283, intron 16 of 38) intron (NM_080283, intron 16 of 38) 20295 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 131.667-124 chr8 65395598 65395733 + 1.66667 NA Intergenic L2a|LINE|L2 167001 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 174.5-32 chr4 96546340 96546570 + 1.66667 NA intron (NR_147149, intron 2 of 3) MIRb|SINE|MIR 235752 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 390.834-2 chr6 158406800 158407101 + 1.66667 NA intron (NM_020245, intron 1 of 13) intron (NM_020245, intron 1 of 13) 83968 NR_145798 109623462 NR_145798 SNORA116 - small nucleolar RNA, H/ACA box 116 snoRNA 384.333-2 chr8 111499041 111499743 + 1.66667 NA Intergenic Intergenic 122753 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 200-14 chr13 97847044 97847246 + 1.66667 NA Intergenic Intergenic -106530 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 289.667-9 chr7 33317564 33317882 + 1.66667 NA intron (NM_198428, intron 9 of 22) L2c|LINE|L2 188159 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 174.667-68 chr8 109237983 109238100 + 1.66667 NA Intergenic L1ME1|LINE|L1 91892 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 425.334-2 chr13 96726839 96727164 + 1.66667 NA intron (NM_153456, intron 1 of 1) MIRb|SINE|MIR 257171 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 199.667-38 chr20 58600970 58601106 + 1.66667 NA intron (NR_034147, intron 6 of 6) L1MB8|LINE|L1 -33734 NR_125359 79160 Hs.280135 NR_125359 ENSG00000268941 LINC01711 - long intergenic non-protein coding RNA 1711 ncRNA 359.667 chr18 78190410 78190797 + 1.66667 NA Intergenic Intergenic -196876 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 361-3 chr2 58380924 58381370 + 1.66667 NA Intergenic Intergenic 105270 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 358.501-2 chr4 158135560 158135860 + 1.66667 NA intron (NM_016613, intron 3 of 4) intron (NM_016613, intron 3 of 4) -35042 NR_147408 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 211.834-6 chr7 13851894 13852088 + 1.66667 NA Intergenic LTR40c|LTR|ERVL 134523 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 311.667-7 chr7 34327872 34328174 + 1.66667 NA Intergenic Intergenic -330195 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 305.667-16 chr8 130482046 130482278 + 1.66667 NA Intergenic AluSx|SINE|Alu -38488 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 458 chr17 60933531 60933995 + 1.66667 NA intron (NM_001330413, intron 13 of 25) intron (NM_001330413, intron 13 of 25) 255912 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 351.667-4 chr11 133934218 133934618 + 1.66667 NA intron (NM_001277285, intron 7 of 19) intron (NM_001277285, intron 7 of 19) 22378 NM_001277285 22997 Hs.204121 NM_014987 ENSG00000080854 IGSF9B - immunoglobulin superfamily member 9B protein-coding 398.334 chr10 20480119 20480542 + 1.66667 NA Intergenic L1MA10|LINE|L1 -71640 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 253-24 chr8 121441834 121442159 + 1.66667 NA Intergenic Intergenic -197350 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 275.334-4 chr4 36722516 36722976 + 1.66667 NA Intergenic Intergenic -80846 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 355.667-9 chr8 112477103 112477341 + 1.66667 NA intron (NM_001363185, intron 29 of 66) MamRep137|DNA|TcMar-Tigger -166271 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 305.834-3 chr17 66039972 66040246 + 1.66667 NA intron (NM_001353129, intron 12 of 26) L1ME3|LINE|L1 151783 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 322.666-2 chr8 120181217 120181541 + 1.66667 NA intron (NM_021110, intron 5 of 47) intron (NM_021110, intron 5 of 47) 56277 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 312.5-6 chr22 26965788 26966237 + 1.66667 NA Intergenic Intergenic 62720 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 198-63 chr9 936287 936496 + 1.66667 NA intron (NM_001363767, intron 4 of 4) intron (NM_001363767, intron 4 of 4) -40264 NM_021240 58524 Hs.189174 NM_021240 ENSG00000064218 DMRT3 DMRTA3 doublesex and mab-3 related transcription factor 3 protein-coding 374-5 chr3 125249955 125250261 + 1.66667 NA intron (NM_001348434, intron 6 of 7) L1MA9|LINE|L1 -37343 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 137.667-102 chrX 104129540 104129722 + 1.66667 NA intron (NM_001012755, intron 1 of 1) Tigger17b|DNA|TcMar-Tigger -4999 NR_039980 286437 Hs.656786 NR_039980 LOC286437 - uncharacterized LOC286437 ncRNA 317.334-4 chr3 174719564 174719797 + 1.66667 NA Intergenic Intergenic -139654 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 220-8 chr13 111526377 111526517 + 1.66667 NA Intergenic Intergenic -69562 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 212.5-24 chr5 86703426 86703599 + 1.66667 NA Intergenic Intergenic -43306 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 266.667-8 chr2 21628680 21628923 + 1.66667 NA Intergenic Intergenic 81851 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 498.333-2 chr15 58582574 58583145 + 1.66667 NA Intergenic L1MEj|LINE|L1 -84124 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 389.834-2 chr17 71342578 71342975 + 1.66667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -140597 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 158.667-8 chr10 10121564 10121748 + 1.66667 NA Intergenic ERVL-E-int|LTR|ERVL 62934 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 195.167-3 chr10 120167431 120167604 + 1.66667 NA Intergenic L1ME4a|LINE|L1 187706 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 281.333-9 chr22 33076175 33076481 + 1.66667 NA Intergenic Intergenic -17947 NM_001369909 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 460.834 chr18 3284272 3284639 + 1.66667 NA Intergenic Intergenic 21736 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 249.333-18 chr4 47726962 47727270 + 1.66667 NA intron (NM_006587, intron 5 of 21) Charlie2a|DNA|hAT-Charlie 74447 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 426.501-2 chr8 102214138 102214466 + 1.66667 NA intron (NM_001172477, intron 6 of 8) intron (NM_001172477, intron 6 of 8) 24529 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 319.166 chr3 105346357 105346674 + 1.66667 NA Intergenic MamRep38|DNA|hAT -20198 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 180-55 chr8 80936850 80937050 + 1.66667 NA Intergenic L2c|LINE|L2 -62169 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 158.333-36 chr18 21565398 21565672 + 1.66667 NA intron (NM_052911, intron 6 of 11) intron (NM_052911, intron 6 of 11) 35169 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 305-8 chr9 97939292 97939920 + 1.66667 NA intron (NM_018437, intron 1 of 4) intron (NM_018437, intron 1 of 4) -1434 NM_197978 55363 Hs.176626 NM_018437 ENSG00000136929 HEMGN CT155|EDAG|EDAG-1|NDR hemogen protein-coding 250.167-10 chr2 44238030 44238301 + 1.66667 NA Intergenic AluSq2|SINE|Alu -37315 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 204.333-61 chr9 77432803 77433072 + 1.66667 NA intron (NM_004297, intron 3 of 6) intron (NM_004297, intron 3 of 6) -14712 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 179-22 chr2 55933241 55933375 + 1.66667 NA Intergenic Intergenic -9526 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 427 chr14 46589825 46590289 + 1.66667 NA Intergenic Intergenic 61724 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 308.667-4 chr2 148482251 148482581 + 1.66667 NA intron (NM_018328, intron 9 of 14) L1ME4a|LINE|L1 -162335 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 225.667-32 chr8 40295738 40295964 + 1.66667 NA Intergenic THE1B|LTR|ERVL-MaLR 47512 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 321.334-2 chr7 85619609 85619868 + 1.66667 NA Intergenic Intergenic 198616 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 130-27 chr12 59685212 59685338 + 1.66667 NA intron (NM_001270622, intron 2 of 5) intron (NM_001270622, intron 2 of 5) -4095 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 312.001 chr3 26330927 26331317 + 1.66667 NA Intergenic L1PA17|LINE|L1 -291684 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 296.167 chr1 201166542 201166788 + 1.66667 NA intron (NM_001288564, intron 1 of 5) intron (NM_001288564, intron 1 of 5) 4917 NM_001288564 252839 Hs.181444 NM_016456 ENSG00000116857 TMEM9 DERM4|TMEM9A transmembrane protein 9 protein-coding 386.668-2 chr4 72172279 72172552 + 1.66667 NA Intergenic MIRb|SINE|MIR 133283 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 305.667-9 chr22 26424052 26424346 + 1.66667 NA Intergenic AluSq2|SINE|Alu -5061 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 190.667-2 chr1 73068897 73069033 + 1.66667 NA Intergenic Intergenic -237205 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 576 chr8 88631306 88632124 + 1.66667 NA Intergenic L1MA10|LINE|L1 -304232 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 383.667-7 chr8 132791757 132792202 + 1.66667 NA intron (NM_198513, intron 2 of 7) intron (NM_198513, intron 2 of 7) 16591 NM_001277196 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 481.667 chr2 98207601 98208235 + 1.66667 NA intron (NR_144297, intron 12 of 18) intron (NR_144297, intron 12 of 18) 58385 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 308.5-10 chr5 92555236 92555651 + 1.66667 NA Intergenic Intergenic 1015900 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 182-40 chr5 61941202 61941377 + 1.66667 NA Intergenic Intergenic -205591 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 351.667-11 chr4 54121373 54121830 + 1.66667 NA Intergenic L1MEd|LINE|L1 21438 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 223.667-32 chr9 28177177 28177418 + 1.66667 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 542008 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 300-10 chr9 84433932 84434205 + 1.66667 NA Intergenic Intergenic -65341 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 360-5 chr6 74408671 74408948 + 1.66667 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 339358 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 263-17 chr8 79995478 79995862 + 1.66667 NA intron (NM_014018, intron 2 of 2) Tigger15a|DNA|TcMar-Tigger 34589 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 280-18 chr8 54754233 54754498 + 1.66667 NA Intergenic Intergenic 138269 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 420.001 chr5 55393577 55393922 + 1.66667 NA intron (NM_015360, intron 19 of 26) intron (NM_015360, intron 19 of 26) 85760 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 166.5-35 chr2 228518997 228519455 + 1.66667 NA intron (NR_151716, intron 1 of 3) intron (NR_151716, intron 1 of 3) 92169 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 237.501 chr10 81480361 81480587 + 1.66667 NA Intergenic Intergenic -394720 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 507-2 chr4 97681776 97682171 + 1.66667 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 315047 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 450 chr16 79785068 79785479 + 1.66667 NA intron (NR_104660, intron 1 of 3) intron (NR_104660, intron 1 of 3) -9976 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 290.834-6 chr2 132818697 132818944 + 1.66667 NA intron (NM_207481, intron 11 of 17) Charlie4a|DNA|hAT-Charlie -96737 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 273.333-7 chr16 27320694 27320968 + 1.66667 NA intron (NM_001257997, intron 1 of 9) intron (NM_001257997, intron 1 of 9) 6857 NM_001257997 3566 Hs.513457 NM_000418 ENSG00000077238 IL4R CD124|IL-4RA|IL4RA interleukin 4 receptor protein-coding 318.334-7 chr8 31463637 31464155 + 1.66667 NA Intergenic Intergenic -175856 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 235-32 chr8 54228380 54228729 + 1.66667 NA Intergenic Intergenic 93313 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 329.667-4 chr21 16366370 16366607 + 1.66667 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -52715 NR_136544 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 215.667-46 chr6 66194716 66194934 + 1.66667 NA Intergenic Intergenic 406946 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 246.333-26 chr9 21780046 21780253 + 1.66667 NA Intergenic Intergenic -22487 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 230.334-3 chr20 45240106 45240415 + 1.66667 NA Intergenic L3|LINE|CR1 14304 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 384.834 chr7 41195306 41195647 + 1.66667 NA Intergenic Intergenic 93872 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 469.668 chr3 153678231 153678778 + 1.66667 NA intron (NR_146713, intron 2 of 6) intron (NR_146713, intron 2 of 6) 84022 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 207.334-3 chr2 220646070 220646263 + 1.66667 NA Intergenic Intergenic -739601 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 264.333 chr10 48645045 48645479 + 1.66667 NA intron (NM_001347738, intron 2 of 10) L1MB7|LINE|L1 7240 NM_001256025 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 189.167-39 chr5 61484880 61485035 + 1.66667 NA intron (NM_020928, intron 2 of 13) MIRc|SINE|MIR 152699 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 227.167-10 chr16 7139733 7139925 + 1.66667 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -193016 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 382-3 chr3 117240932 117241525 + 1.66667 NA Intergenic Intergenic 319797 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 420 chr11 122135481 122135845 + 1.66667 NA intron (NR_137184, intron 1 of 1) intron (NR_137184, intron 1 of 1) 10930 NR_029477 406882 NR_029477 ENSG00000198975 MIRLET7A2 LET7A2|MIRNLET7A2|let-7a-2 microRNA let-7a-2 ncRNA 285.667-12 chr7 20385437 20385947 + 1.66667 NA intron (NM_002214, intron 6 of 13) intron (NM_002214, intron 6 of 13) -53930 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 327.333-10 chr4 122267795 122268165 + 1.66667 NA intron (NM_015312, intron 44 of 83) intron (NM_015312, intron 44 of 83) 97377 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 390-2 chr12 43504764 43505104 + 1.66667 NA intron (NM_025003, intron 3 of 38) L1MB2|LINE|L1 47269 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 244.167-16 chr6 66844521 66844757 + 1.66667 NA Intergenic MLT1D|LTR|ERVL-MaLR 1056760 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 411.334-2 chr12 40918601 40918855 + 1.66667 NA exon (NM_175038, exon 2 of 22) exon (NM_175038, exon 2 of 22) 10371 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 434.167 chr12 26570304 26570622 + 1.66667 NA intron (NM_002223, intron 34 of 56) intron (NM_002223, intron 34 of 56) 262731 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 199.334-4 chr20 47264082 47264241 + 1.66667 NA intron (NM_001281774, intron 12 of 23) intron (NM_001281774, intron 12 of 23) -54341 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 131.667-59 chr2 58498986 58499100 + 1.66667 NA Intergenic Intergenic -21710 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 270.833-6 chr12 120803381 120803691 + 1.66667 NA intron (NM_139015, intron 2 of 10) intron (NM_139015, intron 2 of 10) 77710 NM_000017 35 Hs.507076 NM_000017 ENSG00000122971 ACADS ACAD3|SCAD acyl-CoA dehydrogenase short chain protein-coding 275.334-2 chr14 65682667 65682941 + 1.66667 NA intron (NR_038167, intron 7 of 8) intron (NR_038167, intron 7 of 8) 211702 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 301.001 chr22 32069058 32069477 + 1.66667 NA intron (NM_000343, intron 5 of 14) L1MA8|LINE|L1 10097 NM_001256314 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 294.334-7 chr8 110730615 110730917 + 1.66667 NA Intergenic Intergenic 296667 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 362.5-2 chr12 56926997 56927276 + 1.66667 NA intron (NM_148897, intron 3 of 3) L5|LINE|RTE-X 7272 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 187-43 chr8 78504704 78504914 + 1.66667 NA Intergenic L1MC4a|LINE|L1 -11531 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 229.167-25 chr4 28563984 28564188 + 1.66667 NA Intergenic Intergenic -255496 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 294.834-4 chr5 50784495 50784838 + 1.66667 NA intron (NM_024615, intron 9 of 25) intron (NM_024615, intron 9 of 25) 117252 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 237.667-8 chr3 101986724 101986958 + 1.66667 NA intron (NR_026934, intron 2 of 3) LTR16D|LTR|ERVL 45982 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 268-17 chr3 194184208 194184669 + 1.66667 NA Intergenic Intergenic 21869 NR_125404 100505920 Hs.436654 NR_125403 ENSG00000225742 LINC02036 - long intergenic non-protein coding RNA 2036 ncRNA 418.001 chr22 25946114 25946521 + 1.66667 NA intron (NM_001318245, intron 35 of 43) intron (NM_001318245, intron 35 of 43) 204129 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 241-21 chr6 838048 838302 + 1.66667 NA Intergenic Intergenic -30323 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 179-55 chr8 133061791 133061910 + 1.66667 NA intron (NM_001045557, intron 1 of 7) intron (NM_001045557, intron 1 of 7) -1496 NM_006748 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 317.667-5 chr3 120122835 120123128 + 1.66667 NA Intergenic L3|LINE|CR1 -28534 NM_001354596 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 203.334-6 chr7 20301638 20301795 + 1.66667 NA intron (NR_110117, intron 3 of 4) intron (NR_110117, intron 3 of 4) 5008 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 428.834-2 chr8 34497789 34498126 + 1.66667 NA Intergenic LTR85a|LTR|Gypsy? -285964 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 430.501 chr11 46449473 46449904 + 1.66667 NA intron (NM_001267782, intron 13 of 19) L1MC1|LINE|L1 -2119 NR_036118 100422825 NR_036118 ENSG00000283497 MIR3160-2 mir-3160-2 microRNA 3160-2 ncRNA 258.333 chr1 44410320 44410719 + 1.66667 NA intron (NM_018150, intron 1 of 14) intron (NM_018150, intron 1 of 14) 5264 NM_018150 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 281-3 chr1 246477790 246477998 + 1.66667 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) 29385 NM_001167740 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 406.001 chr5 101077749 101078082 + 1.66667 NA Intergenic ERVL-B4-int|LTR|ERVL -174633 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 460 chr2 174580558 174581307 + 1.66667 NA intron (NM_001077269, intron 3 of 7) MIRc|SINE|MIR -22860 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 233.834-13 chr8 132743134 132743333 + 1.66667 NA intron (NM_144649, intron 5 of 9) L2a|LINE|L2 17349 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 218.834-5 chr22 31836224 31836534 + 1.66667 NA intron (NR_157125, intron 25 of 41) intron (NR_157125, intron 25 of 41) 82356 NM_001369903 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 355.334-3 chr8 122183285 122183863 + 1.66667 NA Intergenic Intergenic 385070 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 319.5 chr14 32549470 32549957 + 1.66667 NA intron (NM_004274, intron 4 of 13) MIR|SINE|MIR 220415 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 197-15 chr14 65890493 65890723 + 1.66667 NA Intergenic MLT1L|LTR|ERVL-MaLR 419506 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 407.667-2 chr7 46659917 46660467 + 1.66667 NA Intergenic MLT2B2|LTR|ERVL 36930 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 375.5 chr4 176308641 176309134 + 1.66667 NA Intergenic L2b|LINE|L2 -11079 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 205.5-11 chr17 61868649 61868839 + 1.66667 NA intron (NM_001351695, intron 23 of 24) intron (NM_001351695, intron 23 of 24) -5185 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 129.167-64 chr5 113984856 113984958 + 1.66667 NA Intergenic Intergenic -377163 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 188.334-6 chr2 148748381 148748531 + 1.66667 NA intron (NM_015630, intron 3 of 13) intron (NM_015630, intron 3 of 13) 103705 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 360.667-2 chr5 68163527 68163914 + 1.66667 NA Intergenic L1ME3D|LINE|L1 -26156 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 544.166 chr2 14168059 14168700 + 1.66667 NA Intergenic Intergenic 232579 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 362.334-2 chr2 51415996 51416283 + 1.66667 NA intron (NR_135237, intron 4 of 10) L1MEg|LINE|L1 383538 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 217.334-6 chr3 143201184 143201334 + 1.66667 NA Intergenic Intergenic 81488 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 229.667-4 chr10 82887423 82887594 + 1.66667 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -654588 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 390-3 chr12 98816667 98817098 + 1.66667 NA intron (NM_001352203, intron 3 of 10) intron (NM_001352203, intron 3 of 10) 77892 NM_001352222 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 368 chr1 68477667 68478021 + 1.66667 NA exon (NM_017779, exon 10 of 11) exon (NM_017779, exon 10 of 11) -18832 NR_110671 101927220 Hs.382856 NR_110671 ENSG00000234264 DEPDC1-AS1 - DEPDC1 antisense RNA 1 ncRNA 184.834-2 chr18 69203625 69203774 + 1.66667 NA Intergenic Intergenic -197189 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 201.334 chr1 176255569 176255701 + 1.66667 NA Intergenic L1MA5|LINE|L1 -48349 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 178.167-41 chr6 126141942 126142134 + 1.66667 NA Intergenic Intergenic 155498 NR_146804 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 328.5-7 chr4 41122482 41122854 + 1.66667 NA intron (NM_173075, intron 2 of 16) intron (NM_173075, intron 2 of 16) 91874 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 248.667-22 chr8 55837838 55838015 + 1.66667 NA Intergenic Intergenic -41909 NM_001111097 4067 Hs.491767 NM_002350 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 241.167 chr12 91128747 91128954 + 1.66667 NA Intergenic Intergenic -17356 NM_002345 4060 Hs.406475 NM_002345 ENSG00000139329 LUM LDC|SLRR2D lumican protein-coding 594.166 chr4 30276823 30277274 + 1.66667 NA Intergenic Intergenic -443321 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 279.667-10 chr2 14695067 14695235 + 1.66667 NA Intergenic Intergenic 62434 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 234.667-33 chr8 10921392 10921564 + 1.66667 NA intron (NM_173683, intron 2 of 2) MIRc|SINE|MIR 81452 NR_125432 101929229 Hs.129800 NR_125432 LOC101929229 - uncharacterized LOC101929229 ncRNA 307.667-2 chr1 189237901 189238142 + 1.66667 NA Intergenic L1M5|LINE|L1 1237989 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 373.667-2 chr3 88829980 88830295 + 1.66667 NA Intergenic Intergenic -277484 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 421.833-2 chr8 82726850 82727430 + 1.66667 NA Intergenic L1PA16|LINE|L1 -184964 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 193.667-31 chr20 40973036 40973205 + 1.66667 NA Intergenic AluSz|SINE|Alu -7593 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 155.667-74 chr7 54325925 54326063 + 1.66667 NA Intergenic Intergenic -4703 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 659.333 chr12 18341530 18342196 + 1.66667 NA intron (NM_001288774, intron 9 of 32) intron (NM_001288774, intron 9 of 32) 80323 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 283.334-9 chr5 7186312 7186534 + 1.66667 NA Intergenic Intergenic 82931 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 188-55 chr6 75038688 75038815 + 1.66667 NA Intergenic Intergenic 90031 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 564.667 chr2 48861394 48861801 + 1.66667 NA Intergenic Intergenic -105873 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 265.334-3 chr10 44400001 44400257 + 1.66667 NA Intergenic Intergenic -15032 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 342.334-3 chr2 71257179 71257577 + 1.66667 NA Intergenic Charlie1b|DNA|hAT-Charlie -30275 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 189.667-43 chr6 50136150 50136359 + 1.66667 NA Intergenic Intergenic -86325 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 187.167-5 chr10 58765311 58765548 + 1.66667 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 50414 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 303.333-8 chr20 47269610 47269929 + 1.66667 NA intron (NM_001281774, intron 12 of 23) intron (NM_001281774, intron 12 of 23) -48733 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 330.167-4 chr3 190783901 190784223 + 1.66667 NA Intergenic L1MEc|LINE|L1 78632 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 327.334 chr3 89847168 89847412 + 1.66667 NA Intergenic (GTTTT)n|Simple_repeat|Simple_repeat 739669 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 186.5-50 chr4 122209661 122210050 + 1.66667 NA exon (NM_015312, exon 17 of 84) exon (NM_015312, exon 17 of 84) 39252 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 356.333-5 chr6 50968649 50969095 + 1.66667 NA Intergenic Intergenic 150001 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 251.834-5 chr4 94570587 94570756 + 1.66667 NA intron (NM_001011516, intron 3 of 9) intron (NM_001011516, intron 3 of 9) 118729 NM_006457 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 225.333-3 chr10 2061760 2062002 + 1.66667 NA Intergenic (AATATT)n|Simple_repeat|Simple_repeat 14208 NR_106720 102465944 NR_106720 ENSG00000278069 MIR6072 hsa-mir-6072 microRNA 6072 ncRNA 226.167-25 chr7 42535655 42536043 + 1.66667 NA Intergenic Intergenic 170598 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 338.5-5 chr2 205812114 205812404 + 1.66667 NA Intergenic Intergenic 129758 NM_018534 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 346.167-3 chr7 80631143 80631589 + 1.66667 NA intron (NM_001371077, intron 1 of 14) intron (NM_001371077, intron 1 of 14) -7150 NM_000072 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 444.167-6 chr9 31039226 31039564 + 1.66667 NA Intergenic Intergenic 342095 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 231.667-31 chr8 113425266 113425511 + 1.66667 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) 11551 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 311.667-5 chr3 187338575 187338998 + 1.66667 NA Intergenic MamRep137|DNA|TcMar-Tigger -29599 NM_022147 64108 Hs.43388 NM_022147 ENSG00000136514 RTP4 IFRG28|Z3CXXC4 receptor transporter protein 4 protein-coding 241.666 chr1 89022449 89022722 + 1.66667 NA intron (NM_018284, intron 1 of 10) intron (NM_018284, intron 1 of 10) 281 NR_135007 2635 Hs.720167 NM_018284 ENSG00000117226 GBP3 - guanylate binding protein 3 protein-coding 456.834 chr7 49746673 49747202 + 1.66667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -26701 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 318.334-8 chr8 90305705 90305960 + 1.66667 NA intron (NR_051989, intron 2 of 3) L1MB8|LINE|L1 84344 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 413.667 chr10 33006708 33007245 + 1.66667 NA Intergenic Intergenic -48746 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 233.333-19 chr17 16946849 16947097 + 1.66667 NA intron (NM_012452, intron 3 of 4) intron (NM_012452, intron 3 of 4) -13797 NR_147084 96597 NR_147084 TBC1D27P TBC1D27 TBC1 domain family member 27, pseudogene pseudo 356.667-3 chr2 81962930 81963339 + 1.66667 NA Intergenic Intergenic -496188 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 307.334-3 chr17 70187242 70187572 + 1.66667 NA Intergenic Intergenic 17872 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 197.334-4 chr8 52322323 52322516 + 1.66667 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) -67927 NM_001352842 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 361.001-2 chr5 174562565 174562913 + 1.66667 NA Intergenic Intergenic -161843 NM_001363626 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 226-5 chr14 62963981 62964154 + 1.66667 NA intron (NM_139318, intron 6 of 10) intron (NM_139318, intron 6 of 10) 81391 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 312.334-2 chr2 42706671 42706956 + 1.66667 NA intron (NM_001330443, intron 12 of 16) Charlie21a|DNA|hAT-Charlie 57448 NM_148962 165140 Hs.168439 NM_148962 ENSG00000162881 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid receptor 1 protein-coding 361.834-2 chr9 77534127 77534609 + 1.66667 NA intron (NM_004297, intron 1 of 6) intron (NM_004297, intron 1 of 6) 86719 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 333.667-4 chr5 102536551 102536901 + 1.66667 NA Intergenic L1M5|LINE|L1 -37725 NM_001308014 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 378.167 chr18 70653247 70653676 + 1.66667 NA Intergenic Intergenic -2507 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 350.334-3 chr9 34029242 34030042 + 1.66667 NA intron (NM_001370059, intron 1 of 28) FLAM_C|SINE|Alu 19245 NR_163243 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 300.334-4 chr6 10216321 10216559 + 1.66667 NA Intergenic Intergenic -188062 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 190.667-41 chr5 16219710 16219861 + 1.66667 NA Intergenic Intergenic 39544 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 255.834-4 chr17 72292942 72293108 + 1.66667 NA Intergenic L2c|LINE|L2 -49786 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 302.333-10 chr8 108003972 108004461 + 1.66667 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 77723 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 233.834-5 chr11 127984233 127984594 + 1.66667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -224353 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 298.167-3 chr2 5419099 5419376 + 1.66667 NA Intergenic Intergenic 271881 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 288.834-3 chr5 19764678 19765001 + 1.66667 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 121433 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 295-5 chr7 103065199 103065549 + 1.66667 NA intron (NR_105043, intron 1 of 20) L1MC5|LINE|L1 9194 NM_145032 222235 Hs.660029 NM_145032 ENSG00000161040 FBXL13 DRC6|Fbl13 F-box and leucine rich repeat protein 13 protein-coding 280.667-27 chr8 128129662 128130009 + 1.66667 NA Intergenic L1M4a1|LINE|L1 -20281 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 427.334 chr10 62709615 62710210 + 1.66667 NA Intergenic Intergenic -94808 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 358.334-3 chr7 115100829 115101076 + 1.66667 NA intron (NR_120521, intron 1 of 3) intron (NR_120521, intron 1 of 3) 21994 NR_120521 102724386 Hs.352357 NR_120521 ENSG00000225535 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 345.334 chr14 70530514 70531091 + 1.66667 NA intron (NM_003814, intron 1 of 1) L1PA8|LINE|L1 4202 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 207.5-34 chr7 41155224 41155365 + 1.66667 NA Intergenic L1PA10|LINE|L1 53690 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 192.001 chr3 31877986 31878139 + 1.66667 NA intron (NM_001174060, intron 2 of 10) intron (NM_001174060, intron 2 of 10) -103688 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 322.667-3 chr2 225625670 225625979 + 1.66667 NA intron (NM_001371273, intron 5 of 7) L2b|LINE|L2 224938 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 254.667-11 chr17 77977410 77977709 + 1.66667 NA Intergenic Intergenic -26678 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 401.834-2 chr17 33804464 33804835 + 1.66667 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -270889 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 298-7 chr4 31239734 31240059 + 1.66667 NA Intergenic Intergenic 68752 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 326.167-4 chr13 27891946 27892340 + 1.66667 NA intron (NR_047484, intron 1 of 4) L1MB4|LINE|L1 25148 NR_047484 100861550 Hs.416201 NR_047484 PLUT HI-LNC71|PDX1-AS1|PLUTO PDX1 associated lncRNA, upregulator of transcription ncRNA 378.501 chr10 47105170 47105674 + 1.66667 NA Intergenic Intergenic 193700 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 419.834 chr4 111391230 111391649 + 1.66667 NA Intergenic Intergenic -530792 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 200.5-16 chr17 72037684 72037889 + 1.66667 NA intron (NR_110877, intron 1 of 2) intron (NR_110877, intron 1 of 2) 7132 NR_110132 102606463 Hs.512309 NR_110124 ENSG00000256124 LINC01152 CMPD|TCONS_00025128 long intergenic non-protein coding RNA 1152 ncRNA 238.333-4 chr10 120759204 120759488 + 1.66667 NA Intergenic Intergenic 91833 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 388.5-4 chr7 46832753 46833157 + 1.66667 NA Intergenic L1MC3|LINE|L1 -135833 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 304-3 chr13 55929157 55929480 + 1.66667 NA Intergenic L1MB8|LINE|L1 754864 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 117.333-111 chr8 121681711 121681821 + 1.66667 NA Intergenic L1MB8|LINE|L1 -40326 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 335.667 chr11 81422061 81422382 + 1.66667 NA Intergenic Intergenic 468615 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 165.834-4 chr21 18353009 18353141 + 1.66667 NA intron (NM_002772, intron 9 of 24) intron (NM_002772, intron 9 of 24) 50710 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 354.167-6 chr5 36288543 36288944 + 1.66667 NA intron (NM_001323279, intron 1 of 12) L1ME2|LINE|L1 13159 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 141-49 chr20 50486525 50486662 + 1.66667 NA Intergenic L1ME1|LINE|L1 -23728 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 279.167-14 chr7 40990777 40991016 + 1.66667 NA Intergenic Tigger1|DNA|TcMar-Tigger -10957 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 422.167-2 chr2 24939125 24939495 + 1.66667 NA Intergenic AluJb|SINE|Alu -19073 NM_004036 109 Hs.467898 NM_004036 ENSG00000138031 ADCY3 AC-III|AC3|BMIQ19 adenylate cyclase 3 protein-coding 367.168 chr10 92143705 92144097 + 1.66667 NA intron (NM_001178137, intron 5 of 9) intron (NM_001178137, intron 5 of 9) 99378 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 417 chr1 160622258 160622648 + 1.66667 NA intron (NM_003037, intron 4 of 6) intron (NM_003037, intron 4 of 6) 24591 NR_104401 6504 Hs.523660 NM_003037 ENSG00000117090 SLAMF1 CD150|CDw150|SLAM signaling lymphocytic activation molecule family member 1 protein-coding 238.334-4 chr5 107149057 107149447 + 1.66667 NA Intergenic L1MB3|LINE|L1 -138238 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 391.666 chr8 140571452 140571720 + 1.66667 NA intron (NM_001164623, intron 3 of 17) intron (NM_001164623, intron 3 of 17) 59590 NR_040712 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex subunit 1 protein-coding 286-7 chr2 174074472 174074749 + 1.66667 NA 3' UTR (NM_001328688, exon 11 of 11) 3' UTR (NM_001328688, exon 11 of 11) 49330 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 239.167-4 chr10 121937144 121937321 + 1.66667 NA intron (NR_120495, intron 1 of 1) L1MC2|LINE|L1 -8431 NM_001288736 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 329.834 chr18 76720253 76720511 + 1.66667 NA Intergenic L1MB3|LINE|L1 30353 NR_122073 400661 Hs.514963 NR_122073 ENSG00000276397 LINC01879 - long intergenic non-protein coding RNA 1879 ncRNA 313.667-4 chr12 28229771 28229963 + 1.66667 NA intron (NM_001352082, intron 2 of 13) intron (NM_001352082, intron 2 of 13) -39129 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 145-83 chr7 84668311 84668423 + 1.66667 NA Intergenic L1MC4|LINE|L1 135891 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 220.333-30 chr7 83695012 83695273 + 1.66667 NA Intergenic Intergenic -46003 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 199.5-13 chr14 96830838 96831064 + 1.66667 NA intron (NM_003384, intron 1 of 12) HAL1M8|LINE|L1 33569 NM_003384 7443 Hs.422662 NM_003384 ENSG00000100749 VRK1 PCH1|PCH1A VRK serine/threonine kinase 1 protein-coding 129-55 chr3 88677644 88677745 + 1.66667 NA Intergenic Intergenic 339238 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 443.668 chr9 28470213 28470522 + 1.66667 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 248938 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 316.001 chr6 121350121 121350367 + 1.66667 NA Intergenic Intergenic -15515 NM_001367759 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 253.667-13 chr4 70357424 70357681 + 1.66667 NA Intergenic MIRc|SINE|MIR -3208 NM_012390 26952 Hs.701334 NM_012390 ENSG00000109208 SMR3A P-B1|PBI|PRL5|PROL5 submaxillary gland androgen regulated protein 3A protein-coding 407.5 chr17 59249201 59249754 + 1.66667 NA intron (NM_182569, intron 4 of 9) intron (NM_182569, intron 4 of 9) 28966 NM_001165993 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 376-4 chr5 30001828 30002288 + 1.66667 NA Intergenic L1MCa|LINE|L1 121498 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 249.5-35 chr9 413333 413535 + 1.66667 NA intron (NM_001193536, intron 27 of 46) L1MB7|LINE|L1 -56857 NM_001256876 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 221.334-2 chr5 63017139 63017426 + 1.66667 NA Intergenic Intergenic 438463 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 321-2 chr10 81676479 81676959 + 1.66667 NA Intergenic Intergenic -198475 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 193.167-21 chr2 52890544 52890682 + 1.66667 NA Intergenic L1M2|LINE|L1 -187998 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 429.334 chr6 46683121 46683577 + 1.66667 NA intron (NR_144468, intron 1 of 3) L1M4|LINE|L1 3081 NR_144468 221400 Hs.656983 NM_001010870 ENSG00000180113 TDRD6 CT41.2|NY-CO-45|SPATA36|TDR2|bA446F17.4 tudor domain containing 6 protein-coding 266.334-4 chr6 38510406 38510863 + 1.66667 NA intron (NM_001172418, intron 5 of 10) Tigger3b|DNA|TcMar-Tigger 29038 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 515.334 chr10 98679119 98679438 + 1.66667 NA intron (NM_021828, intron 6 of 11) Charlie1|DNA|hAT-Charlie -232315 NM_182639 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 215.333-18 chr16 61830282 61830489 + 1.66667 NA intron (NM_001796, intron 4 of 11) intron (NM_001796, intron 4 of 11) 206053 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 175.333 chr1 58166057 58166261 + 1.66667 NA intron (NM_001353980, intron 1 of 5) L1MB7|LINE|L1 84344 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 393.667 chr3 191562805 191563150 + 1.66667 NA intron (NR_120606, intron 4 of 6) intron (NR_120606, intron 4 of 6) 101814 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 279.334-7 chr3 164888527 164888765 + 1.66667 NA Intergenic L1M1|LINE|L1 -57166 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 372.334 chr20 40285290 40285557 + 1.66667 NA Intergenic Intergenic 280962 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 321-5 chr15 57040855 57041132 + 1.66667 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 121548 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 411.834 chr11 98157524 98157949 + 1.66667 NA Intergenic MLT2B1|LTR|ERVL -863213 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 215.834 chr2 80783916 80784048 + 1.66667 NA Intergenic Intergenic 470603 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 174.167-23 chr21 30148237 30148370 + 1.66667 NA Intergenic Intergenic 18502 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 339-6 chr5 117069598 117069914 + 1.66667 NA Intergenic L1M5|LINE|L1 -307547 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 337.167-3 chr17 57434793 57435205 + 1.66667 NA intron (NM_001322250, intron 6 of 13) L2a|LINE|L2 88598 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 247.334-3 chr14 52004132 52004394 + 1.66667 NA TTS (NM_007361) TTS (NM_007361) 14717 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 392.001-2 chr15 63276586 63276915 + 1.66667 NA promoter-TSS (NM_001145646) promoter-TSS (NM_001145646) -800 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 470.667 chr3 79754042 79754639 + 1.66667 NA intron (NM_002941, intron 1 of 30) L2b|LINE|L2 13658 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 236.333-20 chr3 71052651 71052953 + 1.66667 NA intron (NR_146142, intron 8 of 19) intron (NR_146142, intron 8 of 19) 12122 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 351.667-10 chr3 82243710 82243940 + 1.66667 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 257683 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 322.5-6 chr21 23149451 23149856 + 1.66667 NA Intergenic Intergenic 70369 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 235.834-6 chr6 54976081 54976284 + 1.66667 NA Intergenic Intergenic 129411 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 325.334 chr1 30715765 30715992 + 1.66667 NA intron (NM_002379, intron 5 of 7) intron (NM_002379, intron 5 of 7) -2894 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 207-12 chr14 54010639 54010864 + 1.66667 NA Intergenic L1ME3G|LINE|L1 -53860 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 342.5 chr1 115249578 115249908 + 1.66667 NA Intergenic L1ME3D|LINE|L1 -33291 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 154.167-62 chr8 137858622 137858841 + 1.66667 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 224814 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 209.667-15 chr15 71487399 71487630 + 1.66667 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -59722 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 447.834-2 chr14 41351129 41351645 + 1.66667 NA Intergenic Intergenic -255469 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 191.333-5 chr11 65402578 65402753 + 1.66667 NA intron (NM_001300832, intron 8 of 9) L1M5|LINE|L1 16028 NM_001300832 83786 Hs.578433 NM_031904 ENSG00000126391 FRMD8 FKSG44|iTAP FERM domain containing 8 protein-coding 227.334-8 chr21 30950121 30950282 + 1.66667 NA Intergenic L1M4|LINE|L1 -68621 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 238.333-11 chr12 103291421 103291680 + 1.66667 NA intron (NR_103526, intron 4 of 10) MER66D|LTR|ERV1 139708 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 363.334-2 chr2 222967361 222967983 + 1.66667 NA Intergenic Intergenic -84258 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 278.334-3 chr18 22376816 22377000 + 1.66667 NA Intergenic L1ME1|LINE|L1 41007 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 304-7 chr7 38294741 38295031 + 1.66667 NA Intergenic Intergenic -21239 NM_001003799 445347 Hs.534032 NM_001003799 TARP CD3G|TCRG|TCRGC1|TCRGC2|TCRGV TCR gamma alternate reading frame protein protein-coding 365 chr11 5677513 5677916 + 1.66667 NA intron (NM_033034, intron 4 of 7) AluY|SINE|Alu 7360 NM_033093 85363 Hs.125300 NM_033034 ENSG00000132256 TRIM5 RNF88|TRIM5alpha tripartite motif containing 5 protein-coding 183.333-50 chr6 37317725 37317897 + 1.66667 NA intron (NR_130108, intron 12 of 12) L2a|LINE|L2 -36172 NM_003958 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 264.334 chr10 62691947 62692271 + 1.66667 NA Intergenic Intergenic -112611 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 197-56 chr9 30621018 30621224 + 1.66667 NA Intergenic L1MB4|LINE|L1 -212667 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 337-4 chr21 24775985 24776329 + 1.66667 NA Intergenic Intergenic -64393 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 261.334 chr11 58197240 58197445 + 1.66667 NA Intergenic L1MA8|LINE|L1 6839 NM_001004459 219958 Hs.553644 NM_001004459 ENSG00000197887 OR1S2 OR11-231 olfactory receptor family 1 subfamily S member 2 protein-coding 363.334-3 chr4 75322853 75323171 + 1.66667 NA Intergenic Intergenic -31064 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 222.333-31 chr6 118223273 118223548 + 1.66667 NA intron (NM_001029858, intron 2 of 7) MIRb|SINE|MIR 137507 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 193.333-3 chr1 80063339 80063712 + 1.66667 NA Intergenic Intergenic -472230 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 227.334-5 chr16 53311762 53312016 + 1.66667 NA intron (NM_001352157, intron 33 of 37) MIRb|SINE|MIR 59323 NM_001347693 643802 Hs.451336 NM_001207030 LOC643802 - u3 small nucleolar ribonucleoprotein protein MPP10-like protein-coding 163-44 chr4 111661265 111661457 + 1.66667 NA Intergenic Intergenic -484093 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 224-7 chr11 10496097 10496448 + 1.66667 NA intron (NM_001025389, intron 9 of 14) intron (NM_001025389, intron 9 of 14) 12054 NR_039705 100616263 NR_039705 ENSG00000283813 MIR4485 mir-4485 microRNA 4485 ncRNA 152-42 chr6 131600746 131600897 + 1.66667 NA intron (NM_015979, intron 18 of 30) Charlie1a|DNA|hAT-Charlie 27421 NM_004830 9439 Hs.29679 NM_004830 ENSG00000112282 MED23 ARC130|CRSP130|CRSP133|CRSP3|DRIP130|MRT18|SUR-2|SUR2 mediator complex subunit 23 protein-coding 229-2 chr10 34276982 34277175 + 1.66667 NA intron (NM_001184789, intron 19 of 22) intron (NM_001184789, intron 19 of 22) -504398 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 189-39 chr5 9828812 9828954 + 1.66667 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -25494 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 403.668 chr2 62721329 62721593 + 1.66667 NA intron (NM_001142615, intron 2 of 22) L1MD3|LINE|L1 14564 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 223-35 chr8 108291033 108291211 + 1.66667 NA Intergenic L1MC1|LINE|L1 -42405 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 355.167-6 chr7 41186214 41186506 + 1.66667 NA Intergenic Intergenic 84756 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 204.167-31 chr7 110790995 110791235 + 1.66667 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -299891 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 289.167-8 chr14 47331628 47331882 + 1.66667 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 11491 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 252.334 chr10 64408928 64409146 + 1.66667 NA Intergenic L2b|LINE|L2 -416491 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 343.5-8 chr5 111777940 111778504 + 1.66667 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -20004 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 172.5-63 chr8 133816339 133816459 + 1.66667 NA Intergenic Intergenic -39047 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 249.334-3 chr11 114497996 114498181 + 1.66667 NA Intergenic (TATCTA)n|Simple_repeat|Simple_repeat 58621 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 263.834-7 chr5 45386564 45386779 + 1.66667 NA intron (NM_021072, intron 4 of 7) intron (NM_021072, intron 4 of 7) 309709 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 272 chr10 88674754 88675087 + 1.66667 NA intron (NM_001198829, intron 8 of 10) intron (NM_001198829, intron 8 of 10) 10478 NM_001198830 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 465.667 chr1 157324787 157325372 + 1.66667 NA Intergenic L1M4|LINE|L1 -186488 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 258-8 chr8 139644048 139644209 + 1.66667 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 58995 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 352.834 chr1 19856651 19857083 + 1.66667 NA Intergenic Intergenic -25528 NM_015207 23252 Hs.374987 NM_015207 ENSG00000169914 OTUD3 DUBA4 OTU deubiquitinase 3 protein-coding 350-7 chr6 150510383 150510675 + 1.66667 NA Intergenic Intergenic -89356 NM_001329805 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 347.5-3 chr7 129877815 129878224 + 1.66667 NA intron (NM_001202498, intron 3 of 6) intron (NM_001202498, intron 3 of 6) 74941 NM_182697 7328 Hs.643548 NM_003344 ENSG00000186591 UBE2H E2-20K|GID3|UBC8|UBCH|UBCH2 ubiquitin conjugating enzyme E2 H protein-coding 228-3 chr1 186963142 186963442 + 1.66667 NA intron (NM_024420, intron 14 of 17) intron (NM_024420, intron 14 of 17) -129550 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 204.001 chr1 95803789 95803944 + 1.66667 NA Intergenic Intergenic -188202 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 206.334-10 chr6 103574013 103574202 + 1.66667 NA Intergenic L1MD2|LINE|L1 1285439 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 231.667-33 chr8 128137822 128138011 + 1.66667 NA Intergenic Intergenic -12200 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 236.334 chr10 7981168 7981405 + 1.66667 NA intron (NM_031923, intron 4 of 6) intron (NM_031923, intron 4 of 6) 71205 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 348.001-3 chr8 97080955 97081282 + 1.66667 NA intron (NM_016134, intron 7 of 7) intron (NM_016134, intron 7 of 7) 196810 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 316.667-11 chr8 136318899 136319096 + 1.66667 NA Intergenic Intergenic -211801 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 600.667 chr6 121276196 121276819 + 1.66667 NA intron (NR_104452, intron 15 of 35) L1MCa|LINE|L1 57973 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 439.834-2 chr4 54979750 54980133 + 1.66667 NA Intergenic L1MA2|LINE|L1 145654 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 324.501 chr18 70700678 70701013 + 1.66667 NA Intergenic MIR|SINE|MIR -49891 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 353.001 chr3 35400785 35401045 + 1.66667 NA Intergenic Intergenic -6892 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 406.167 chr11 48132713 48133149 + 1.66667 NA TTS (NM_001098503) TTS (NM_001098503) 36149 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 293.333-9 chr2 178687819 178688123 + 1.66667 NA intron (NM_001256850, intron 125 of 312) intron (NM_001256850, intron 125 of 312) -88955 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 148.334-11 chr8 63644962 63645075 + 1.66667 NA Intergenic Intergenic -124412 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 335.667-6 chr5 37510525 37510868 + 1.66667 NA intron (NM_001345998, intron 8 of 17) L1MC4|LINE|L1 131378 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 417.667-2 chr14 84752751 84753147 + 1.66667 NA Intergenic Intergenic -518983 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 340.833 chr12 19122463 19122933 + 1.66667 NA Intergenic Intergenic -7035 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 221.667-20 chr21 24854299 24854588 + 1.66667 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 13893 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 293.501-3 chr5 26555044 26555243 + 1.66667 NA Intergenic MER44A|DNA|TcMar-Tigger 483443 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 184-36 chr3 156770593 156770791 + 1.66667 NA intron (NR_038387, intron 1 of 2) MIRb|SINE|MIR 41329 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 303-2 chr11 20695597 20695908 + 1.66667 NA intron (NM_201551, intron 2 of 18) L1PA16|LINE|L1 26166 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 491.666 chr12 26796236 26796820 + 1.66667 NA intron (NM_002223, intron 1 of 56) L1ME3D|LINE|L1 36666 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 251.333-16 chr22 36920679 36920900 + 1.66667 NA intron (NM_000395, intron 1 of 13) L1MC|LINE|L1 7161 NM_000395 1439 Hs.592192 NM_000395 ENSG00000100368 CSF2RB CD131|CDw131|IL3RB|IL5RB|SMDP5|betaGMR colony stimulating factor 2 receptor beta common subunit protein-coding 456.501 chr11 22326376 22326721 + 1.66667 NA Intergenic Intergenic -11833 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 480.167 chr10 15893398 15893910 + 1.66667 NA Intergenic Intergenic -33121 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 260.834-2 chr3 107098011 107098193 + 1.66667 NA Intergenic Intergenic 142536 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 274.667-6 chr13 52671023 52671279 + 1.66667 NA intron (NM_001130912, intron 11 of 13) intron (NM_001130912, intron 11 of 13) 18315 NM_001130912 10910 Hs.281902 NM_006704 ENSG00000165416 SUGT1 SGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone protein-coding 385-5 chr6 160934602 160934947 + 1.66667 NA Intergenic AluJr4|SINE|Alu -56953 NM_001301072 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 379.001 chr4 38332400 38332678 + 1.66667 NA Intergenic Intergenic -34375 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 318-6 chr2 171635834 171636042 + 1.66667 NA Intergenic Intergenic -51531 NM_001271790 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 267.5-10 chr4 30384953 30385247 + 1.66667 NA Intergenic L1MEf|LINE|L1 -335269 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 237.834 chr10 91761238 91761451 + 1.66667 NA Intergenic L1PB4|LINE|L1 36852 NR_108070 100507633 Hs.291528 NR_108070 ENSG00000228701 TNKS2-AS1 - TNKS2 antisense RNA 1 (head to head) ncRNA 392.167-5 chr7 119807808 119808401 + 1.66667 NA intron (NR_131963, intron 1 of 2) intron (NR_131963, intron 1 of 2) 99271 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 466.5-2 chr4 43849743 43850263 + 1.66667 NA Intergenic LTR80A|LTR|ERVL -166858 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 218.167-29 chr9 87227950 87228209 + 1.66667 NA Intergenic Intergenic 79435 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 466.501 chr12 54755979 54756468 + 1.66667 NA Intergenic L1MA4|LINE|L1 -98293 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 565.501 chr22 35108458 35109017 + 1.66667 NA Intergenic L1MD1|LINE|L1 42579 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 238-34 chrX 34276427 34276666 + 1.66667 NA Intergenic Intergenic -144216 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 211-6 chr10 65141866 65142075 + 1.66667 NA Intergenic L1ME2|LINE|L1 -217452 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 429.333-2 chr8 116900606 116901090 + 1.66667 NA Intergenic L1MA4|LINE|L1 -25982 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|MGS|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 280.667-14 chr2 155850312 155850636 + 1.66667 NA Intergenic Intergenic 404457 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 196-62 chr8 89392393 89392572 + 1.66667 NA Intergenic Intergenic 365229 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 404.834 chr12 40131924 40132400 + 1.66667 NA Intergenic Intergenic -24077 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 296.667-6 chr17 64232394 64232686 + 1.66667 NA intron (NM_018469, intron 1 of 11) intron (NM_018469, intron 1 of 11) -1806 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 530.834 chr14 60994839 60995473 + 1.66667 NA intron (NR_033344, intron 3 of 16) L1MA9|LINE|L1 -13466 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 443.001-2 chr7 45248625 45248966 + 1.66667 NA Intergenic L1M4|LINE|L1 91004 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 300.167-8 chrX 62998341 62998685 + 1.66667 NA Intergenic L1M2|LINE|L1 352819 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 251.667-11 chr3 20792441 20792725 + 1.66667 NA Intergenic MERX|DNA|TcMar-Tigger 450115 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 163.333-60 chr5 3509294 3509500 + 1.66667 NA intron (NR_033898, intron 2 of 4) intron (NR_033898, intron 2 of 4) -5393 NR_104618 102467075 Hs.652949 NR_104618 ENSG00000250716 LINC01017 - long intergenic non-protein coding RNA 1017 ncRNA 313.833-6 chr5 122000344 122000815 + 1.66667 NA intron (NM_152546, intron 4 of 7) L1MEc|LINE|L1 38604 NM_152546 153443 Hs.107622 NM_152546 ENSG00000151304 SRFBP1 BUD22|P49|Rlb1|STRAP|p49/STRAP serum response factor binding protein 1 protein-coding 511.334 chr5 25151239 25151651 + 1.66667 NA intron (NR_147006, intron 3 of 4) LTR16E1|LTR|ERVL 39211 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 258-3 chr3 61897312 61897489 + 1.66667 NA intron (NM_002841, intron 2 of 29) L1MD2|LINE|L1 335829 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 280-20 chr9 27563816 27564066 + 1.66667 NA intron (NM_001256054, intron 3 of 10) Kanga2_a|DNA|TcMar-Tc2 9540 NM_018325 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 574.834 chr1 89718515 89719216 + 1.66667 NA 3' UTR (NM_032270, exon 3 of 3) 3' UTR (NM_032270, exon 3 of 3) 85745 NM_032270 84230 Hs.412836 NM_032270 ENSG00000171488 LRRC8C AD158|FAD158 leucine rich repeat containing 8 VRAC subunit C protein-coding 286.334-7 chr5 61595027 61595260 + 1.66667 NA Intergenic Intergenic -42617 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 345.5 chr1 159018649 159018996 + 1.66667 NA intron (NM_001206567, intron 4 of 10) intron (NM_001206567, intron 4 of 10) 8915 NM_001206567 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 217.5-3 chr10 67790974 67791212 + 1.66667 NA Intergenic Intergenic 47086 NM_201262 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 226-17 chr4 103929347 103929521 + 1.66667 NA Intergenic L1PREC2|LINE|L1 -209449 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 417.334-2 chr2 55754229 55754966 + 1.66667 NA Intergenic L1ME3B|LINE|L1 -60753 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 272.5-12 chr20 45989603 45989825 + 1.66667 NA Intergenic L1M5|LINE|L1 -17511 NM_022095 63925 Hs.174193 NM_022095 ENSG00000198026 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding 266.001-5 chr9 76047658 76047864 + 1.66667 NA intron (NR_120409, intron 5 of 19) intron (NR_120409, intron 5 of 19) 157088 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 202.667-45 chr8 74299705 74299933 + 1.66667 NA intron (NM_020647, intron 2 of 5) intron (NM_020647, intron 2 of 5) 21542 NM_001363050 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 507.334 chr2 156429499 156430212 + 1.66667 NA Intergenic Intergenic -5697 NM_001083112 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 351.5-5 chr20 13788674 13789036 + 1.66667 NA intron (NR_147981, intron 3 of 11) intron (NR_147981, intron 3 of 11) 3827 NM_001039375 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 216.667-35 chr4 133675288 133675546 + 1.66667 NA Intergenic Intergenic 526123 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 308.499 chr22 49068683 49068978 + 1.66667 NA Intergenic L1MB4|LINE|L1 202060 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 277.667-14 chr7 19666055 19666277 + 1.66667 NA Intergenic Intergenic 39270 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 315.334-3 chr5 132897196 132897463 + 1.66667 NA intron (NM_014423, intron 10 of 20) intron (NM_014423, intron 10 of 20) 23661 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 175.667-36 chr2 226144567 226144691 + 1.66667 NA intron (NR_046102, intron 1 of 6) intron (NR_046102, intron 1 of 6) 1835 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 314.834-2 chr18 1291670 1291940 + 1.66667 NA intron (NR_023926, intron 2 of 5) L1MB8|LINE|L1 67824 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 417.334 chr13 68675914 68676410 + 1.66667 NA Intergenic Intergenic 209163 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 517.167-2 chr12 59144193 59144746 + 1.66667 NA Intergenic Intergenic -223931 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 336.666 chr1 233895499 233895734 + 1.66667 NA Intergenic L1MEg2|LINE|L1 -9060 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 227.334-9 chr22 33298425 33298626 + 1.66667 NA intron (NM_133642, intron 12 of 14) MIRc|SINE|MIR 138144 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 316.667-5 chr17 70056560 70056897 + 1.66667 NA intron (NR_104130, intron 1 of 1) L2c|LINE|L2 5457 NR_104130 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 184.167-24 chr15 94091978 94092120 + 1.66667 NA intron (NR_120320, intron 1 of 8) intron (NR_120320, intron 1 of 8) 15889 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 199.167-41 chr7 91574190 91574389 + 1.66667 NA Intergenic Intergenic 306413 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 479.501 chr7 93678685 93679343 + 1.66667 NA Intergenic Intergenic -37914 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 502.167 chr8 112417230 112417733 + 1.66667 NA intron (NM_052900, intron 31 of 68) intron (NM_052900, intron 31 of 68) -226012 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 165.666 chr16 86802794 86802951 + 1.66667 NA Intergenic Intergenic 80781 NR_135182 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 229-12 chr14 58841097 58841383 + 1.66667 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 12952 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 296.667-7 chr18 61047137 61047374 + 1.66667 NA Intergenic L1MB8|LINE|L1 -286175 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 262.334-5 chr7 37162698 37162914 + 1.66667 NA intron (NM_001206480, intron 13 of 21) LTR37B|LTR|ERV1 165010 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 312.834-2 chr12 39935071 39935288 + 1.66667 NA intron (NM_052885, intron 4 of 9) FLAM_C|SINE|Alu 170902 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 313-2 chr1 103214641 103214974 + 1.66667 NA Intergenic Intergenic -106285 NR_134980 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 299.667-17 chrX 51972039 51972377 + 1.66667 NA Intergenic L1MA10|LINE|L1 78585 NM_001005333 9500 Hs.5258 NM_006986 ENSG00000179222 MAGED1 DLXIN-1|NRAGE MAGE family member D1 protein-coding 167.167-57 chr8 13753914 13754095 + 1.66667 NA Intergenic LTR16|LTR|ERVL 124314 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 227.667-26 chr7 31261187 31261334 + 1.66667 NA Intergenic L1ME3A|LINE|L1 79466 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 212-40 chr8 121259345 121259565 + 1.66667 NA Intergenic Intergenic -379891 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 241.333-5 chr10 10105292 10105447 + 1.66667 NA Intergenic L1MC3|LINE|L1 46647 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 214.334-2 chr16 84889490 84889668 + 1.66667 NA intron (NM_031476, intron 14 of 14) intron (NM_031476, intron 14 of 14) 69594 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 213.333-21 chr2 203755617 203755814 + 1.66667 NA Intergenic L1MA3|LINE|L1 49076 NM_006139 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 237.334-3 chr15 40029633 40029886 + 1.66667 NA intron (NM_001013703, intron 34 of 38) intron (NM_001013703, intron 34 of 38) 9422 NM_003134 6727 Hs.533732 NM_003134 ENSG00000140319 SRP14 ALURBP signal recognition particle 14 protein-coding 197.167-12 chr14 62159444 62159625 + 1.66667 NA Intergenic Intergenic -19561 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 315.667-11 chr20 53924166 53924452 + 1.66667 NA Intergenic MIRb|SINE|MIR -48600 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 238.333-15 chr14 81816311 81816563 + 1.66667 NA Intergenic Intergenic -73299 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 339.666-3 chr6 73026206 73026525 + 1.66667 NA intron (NM_001160132, intron 2 of 13) L2a|LINE|L2 -58612 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 180.334-9 chr6 38588822 38589067 + 1.66667 NA intron (NM_052893, intron 5 of 11) intron (NM_052893, intron 5 of 11) 7123 NM_001172418 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 398.668 chr2 194056571 194056919 + 1.66667 NA Intergenic Intergenic -287524 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 181-57 chr7 27341209 27341386 + 1.66667 NA Intergenic Intergenic -94068 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 298.667-10 chr5 26551250 26551554 + 1.66667 NA Intergenic L1MA8|LINE|L1 487184 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 243.334-2 chr1 235773448 235773605 + 1.66667 NA intron (NM_000081, intron 19 of 52) L1MB3|LINE|L1 79534 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 196-4 chr1 222022260 222022412 + 1.66667 NA Intergenic L1P5|LINE|L1 -43816 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 212.334 chr16 77725018 77725187 + 1.66667 NA intron (NM_001243660, intron 1 of 3) intron (NM_001243660, intron 1 of 3) 2588 NM_001105663 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 408.334 chr11 15526640 15526966 + 1.66667 NA Intergenic L1MA6|LINE|L1 -117082 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 189.5-6 chr10 6668632 6669130 + 1.66667 NA Intergenic Intergenic 33811 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 288.5-11 chr6 34895893 34896180 + 1.66667 NA intron (NM_015245, intron 1 of 23) AluSx|SINE|Alu 6781 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 248-21 chr7 85016166 85016378 + 1.66667 NA intron (NM_152754, intron 13 of 16) intron (NM_152754, intron 13 of 16) 105659 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 444.334 chr3 90611241 90611786 + 1.66667 NA Intergenic ALR/Alpha|Satellite|centr 1503892 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 386.334-2 chr8 136509378 136509664 + 1.66667 NA Intergenic L1ME1|LINE|L1 -21277 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 138.167-10 chr11 101183616 101183700 + 1.66667 NA Intergenic ERVL-E-int|LTR|ERVL -53845 NM_000926 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 240.5-28 chrX 80923444 80923725 + 1.66667 NA Intergenic L1MA1|LINE|L1 -113707 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 333.667-7 chr9 28127116 28127668 + 1.66667 NA intron (NM_152570, intron 5 of 6) MLT1H|LTR|ERVL-MaLR -553526 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 417.667-3 chr9 24652600 24653038 + 1.66667 NA Intergenic Intergenic -106922 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 200.667-37 chr3 165925812 165926037 + 1.66667 NA Intergenic HERVL40-int|LTR|ERVL -88501 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 301.5-3 chr17 65892319 65892613 + 1.66667 NA intron (NM_001353129, intron 20 of 26) intron (NM_001353129, intron 20 of 26) -65923 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 435.501 chr7 32342479 32342814 + 1.66667 NA intron (NM_001322059, intron 1 of 17) MIR|SINE|MIR -43318 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 252-20 chr8 129068048 129068335 + 1.66667 NA Intergenic Intergenic -102190 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 355.334 chr3 148022242 148022583 + 1.66667 NA Intergenic Intergenic -55747 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 217-30 chr5 65840801 65840973 + 1.66667 NA Intergenic Intergenic -85667 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 268.667-14 chr8 118933088 118933346 + 1.66667 NA exon (NM_002546, exon 2 of 5) exon (NM_002546, exon 2 of 5) 18668 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 283.334-4 chr15 85938305 85938614 + 1.66667 NA Intergenic Intergenic 112824 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 205-8 chr14 74092751 74092903 + 1.66667 NA intron (NM_001024674, intron 2 of 5) AluSz6|SINE|Alu 7874 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 385.167 chr11 40491857 40492303 + 1.66667 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -198950 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 149-44 chr2 178323173 178323340 + 1.66667 NA intron (NM_145739, intron 1 of 23) L1ME3G|LINE|L1 3014 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 147-57 chr4 35129031 35129409 + 1.66667 NA Intergenic Intergenic -859473 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 441.334 chrX 50315414 50315840 + 1.66667 NA intron (NM_033031, intron 8 of 12) L1MD2|LINE|L1 31085 NM_033670 85417 Hs.130310 NM_033031 ENSG00000147082 CCNB3 - cyclin B3 protein-coding 315.167-14 chr7 7528436 7528748 + 1.66667 NA intron (NM_001037763, intron 3 of 34) L1ME2|LINE|L1 7281 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 399.334 chr2 53522223 53522592 + 1.66667 NA Intergenic Intergenic -245376 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 509.668 chr7 109007866 109008612 + 1.66667 NA Intergenic L1ME3C|LINE|L1 -123652 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 386.668 chr11 81722432 81722738 + 1.66667 NA Intergenic L1MA3|LINE|L1 168251 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 428.334-3 chr2 116502989 116503354 + 1.66667 NA Intergenic Intergenic 1159356 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 240-32 chr6 149050351 149050538 + 1.66667 NA intron (NM_005715, intron 7 of 7) intron (NM_005715, intron 7 of 7) -17783 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 130.167-38 chr20 55429786 55429882 + 1.66667 NA Intergenic L1MC4a|LINE|L1 -2637 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 332.334 chr1 110369434 110369722 + 1.66667 NA intron (NM_001201548, intron 6 of 6) AluSz|SINE|Alu 21448 NM_004696 9122 Hs.351306 NM_004696 ENSG00000168679 SLC16A4 MCT4|MCT5 solute carrier family 16 member 4 protein-coding 254.334-5 chr2 230041921 230042171 + 1.66667 NA intron (NM_152527, intron 4 of 4) intron (NM_152527, intron 4 of 4) 26878 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 335.001 chr3 151202018 151202266 + 1.66667 NA intron (NM_013308, intron 1 of 2) intron (NM_013308, intron 1 of 2) 1074 NM_013308 29909 Hs.549152 NM_013308 ENSG00000174946 GPR171 H963 G protein-coupled receptor 171 protein-coding 407.667 chr6 129765949 129766386 + 1.66667 NA Intergenic Intergenic -55990 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 249-17 chr6 56639409 56639582 + 1.66667 NA exon (NM_001723, exon 7 of 24) exon (NM_001723, exon 7 of 24) 3394 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 310-7 chr3 4666007 4666281 + 1.66667 NA intron (NM_001168272, intron 16 of 60) intron (NM_001168272, intron 16 of 60) 85446 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 225.667-9 chr14 40095266 40095441 + 1.66667 NA Intergenic Intergenic -662853 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 405.167-2 chr18 2612698 2613080 + 1.66667 NA intron (NM_006101, intron 16 of 16) intron (NM_006101, intron 16 of 16) 41332 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 246.666-4 chr2 207387791 207388026 + 1.66667 NA Intergenic Intergenic -118484 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 293.334-3 chr8 43719966 43720181 + 1.66667 NA Intergenic ALR/Alpha|Satellite|centr 427631 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 519.834 chr7 26298356 26299041 + 1.66667 NA intron (NM_001318199, intron 1 of 6) MLT1A|LTR|ERVL-MaLR 5667 NM_001318199 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 163.5-71 chr8 59147403 59147607 + 1.66667 NA Intergenic Intergenic 28295 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 363.333-7 chr5 55446176 55447012 + 1.66667 NA intron (NR_103485, intron 4 of 6) L1MEd|LINE|L1 62332 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 275.5-13 chr8 86974453 86974711 + 1.66667 NA intron (NM_173538, intron 4 of 10) L1ME3E|LINE|L1 108167 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 320.667 chr11 103828082 103828374 + 1.66667 NA Intergenic L1ME3F|LINE|L1 -21678 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 258.333-32 chr8 82757560 82757845 + 1.66667 NA Intergenic Intergenic -154402 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 238.334 chr2 48546287 48546505 + 1.66667 NA intron (NM_001198595, intron 2 of 4) intron (NM_001198595, intron 2 of 4) 16227 NM_006873 11037 Hs.44385 NM_006873 ENSG00000243244 STON1 SALF|SBLF|STN1|STNB1 stonin 1 protein-coding 220.667-27 chr5 22351647 22351908 + 1.66667 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -137927 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 458.001 chr2 142938658 142938997 + 1.66667 NA intron (NM_001199241, intron 5 of 14) intron (NM_001199241, intron 5 of 14) 61163 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 259.167-6 chr22 29977295 29977495 + 1.66667 NA intron (NM_153051, intron 3 of 18) intron (NM_153051, intron 3 of 18) -29654 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 216-36 chr9 33359949 33360182 + 1.66667 NA intron (NM_002504, intron 19 of 23) intron (NM_002504, intron 19 of 23) 42503 NM_001170 364 Hs.455323 NM_001170 ENSG00000165269 AQP7 AQP7L|AQPap|GLYCQTL aquaporin 7 protein-coding 243.001 chr3 42913005 42913217 + 1.66667 NA intron (NM_001134656, intron 3 of 3) intron (NM_001134656, intron 3 of 3) 6969 NM_001134656 389114 Hs.720173 NM_207404 ENSG00000182983 ZNF662 - zinc finger protein 662 protein-coding 245 chr1 35027382 35027834 + 1.66667 NA intron (NM_007167, intron 2 of 15) AluJr|SINE|Alu 4337 NM_007167 9204 Hs.533986 NM_007167 ENSG00000163867 ZMYM6 Buster2|MYM|ZBED7|ZNF198L4|ZNF258 zinc finger MYM-type containing 6 protein-coding 199.834-2 chr17 61138881 61139018 + 1.66667 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 228755 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 373.333-2 chr10 100890454 100890862 + 1.66667 NA Intergenic Intergenic -22305 NM_018121 55719 Hs.447458 NM_018121 ENSG00000119906 SLF2 C10orf6|FAM178A SMC5-SMC6 complex localization factor 2 protein-coding 393.334 chrX 102110650 102110943 + 1.66667 NA Intergenic THE1B|LTR|ERVL-MaLR -14883 NM_080390 140597 Hs.401835 NM_080390 ENSG00000184905 TCEAL2 MY0876G05|WEX1|my048 transcription elongation factor A like 2 protein-coding 273.667-15 chr21 28409471 28409686 + 1.66667 NA Intergenic L1MA9|LINE|L1 -129740 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 422-2 chr21 24716687 24717093 + 1.66667 NA Intergenic Intergenic -123660 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 202-31 chr5 33247542 33247700 + 1.66667 NA intron (NR_147008, intron 2 of 3) intron (NR_147008, intron 2 of 3) 17886 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 175.334-3 chr16 71254757 71254901 + 1.66667 NA Intergenic L1ME4b|LINE|L1 -24107 NM_001198543 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 166.667-49 chr6 69752745 69752868 + 1.66667 NA intron (NM_001367272, intron 3 of 15) intron (NM_001367272, intron 3 of 15) 43660 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 448.167 chr8 111682772 111683234 + 1.66667 NA Intergenic L1MEc|LINE|L1 306364 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 484.167-2 chr8 124624854 124625345 + 1.66667 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 85976 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 261.667-10 chr12 45658978 45659221 + 1.66667 NA Intergenic MER65A|LTR|ERV1 68822 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 193-30 chr3 36552217 36552399 + 1.66667 NA Intergenic Intergenic 171821 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 233.667-14 chr2 188460794 188461004 + 1.66667 NA intron (NM_016315, intron 2 of 11) L1MA2|LINE|L1 163407 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 346 chr17 30005923 30006685 + 1.66667 NA intron (NR_026738, intron 7 of 15) intron (NR_026738, intron 7 of 15) 64670 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 205.834-5 chr5 61417590 61417765 + 1.66667 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 85419 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 199-31 chr6 110201133 110201308 + 1.66667 NA intron (NM_015891, intron 2 of 14) intron (NM_015891, intron 2 of 14) 20793 NM_015891 51362 Hs.428147 NM_015891 ENSG00000168438 CDC40 EHB3|PRP17|PRPF17 cell division cycle 40 protein-coding 273.334-4 chr7 38339110 38339324 + 1.66667 NA Intergenic Intergenic -2360 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 255-21 chr6 62507727 62507983 + 1.66667 NA Intergenic Intergenic -221628 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 291.5-5 chr12 126011073 126011322 + 1.66667 NA Intergenic Intergenic -27823 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 363.333 chr1 225290404 225290775 + 1.66667 NA intron (NM_001367479, intron 55 of 85) L3|LINE|CR1 137449 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 253.167-12 chr6 4554871 4555060 + 1.66667 NA Intergenic Intergenic -55600 NR_122107 497048 Hs.591355 NM_001011540 ENSG00000205444 KU-MEL-3 - uncharacterized LOC497048 ncRNA 364.834 chr16 82808061 82808418 + 1.66667 NA intron (NR_110938, intron 1 of 2) intron (NR_110938, intron 1 of 2) 34920 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 345.667-3 chr12 33056714 33057108 + 1.66667 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -160065 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 424.001 chr2 75034550 75034936 + 1.66667 NA Intergenic Intergenic -56069 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 254.833-4 chr14 62754614 62754960 + 1.66667 NA intron (NM_172375, intron 9 of 9) AluSz6|SINE|Alu 290671 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 321.834 chr2 15005490 15005823 + 1.66667 NA Intergenic Intergenic 372939 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 295-6 chr8 136779787 136780145 + 1.66667 NA intron (NR_147196, intron 2 of 5) AluSq|SINE|Alu 249168 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 221.667 chr1 38706201 38706436 + 1.66667 NA Intergenic L1MEc|LINE|L1 153454 NM_022157 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 267-11 chr5 145588529 145588722 + 1.66667 NA Intergenic Intergenic 246717 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 447.501 chr2 178104384 178104929 + 1.66667 NA intron (NM_001077197, intron 1 of 20) intron (NM_001077197, intron 1 of 20) 3683 NM_001077197 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 495.999 chr6 123198006 123198354 + 1.66667 NA Intergenic L1MEc|LINE|L1 201945 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 246.167-10 chr16 11262549 11263030 + 1.66667 NA Intergenic AluJr|SINE|Alu 6536 NM_005425 7142 Hs.513349 NM_005425 ENSG00000178279 TNP2 TP2 transition protein 2 protein-coding 241.167-5 chr2 76963963 76964213 + 1.66667 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -21877 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 452.834 chr7 3405387 3405760 + 1.66667 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 104321 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 244.667-12 chr2 67571732 67572023 + 1.66667 NA Intergenic L2a|LINE|L2 174544 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 205.667-27 chr18 44653425 44653584 + 1.66667 NA Intergenic MIRc|SINE|MIR -26569 NM_001130110 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 308.834-2 chr17 67204205 67204636 + 1.66667 NA intron (NM_001330447, intron 5 of 32) L1ME4c|LINE|L1 -40356 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 219.667-33 chr8 132147283 132147496 + 1.66667 NA intron (NM_001204824, intron 9 of 14) L2b|LINE|L2 -42124 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 349.833 chr10 117983889 117984379 + 1.66667 NA Intergenic Intergenic -62687 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 346.667-5 chr4 20388588 20388939 + 1.66667 NA intron (NM_001289135, intron 4 of 35) AluSx|SINE|Alu -3426 NR_037876 100505893 Hs.665305 NR_037876 ENSG00000248228 SLIT2-IT1 - SLIT2 intronic transcript 1 ncRNA 250-14 chr21 26337118 26337408 + 1.66667 NA Intergenic L1MA3|LINE|L1 -56372 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 261.667-27 chr5 17939173 17939476 + 1.66667 NA Intergenic Intergenic 132050 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 183-6 chr10 66656221 66656389 + 1.66667 NA intron (NM_001127384, intron 9 of 17) L3|LINE|CR1 -269731 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 230.5-7 chr2 35008346 35008568 + 1.66667 NA Intergenic Intergenic 330900 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 283.334-2 chr12 60703382 60703714 + 1.66667 NA Intergenic Intergenic 1014178 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 242.167-3 chr1 72169476 72169673 + 1.66667 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 112965 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 260.834-6 chr8 18009585 18009875 + 1.66667 NA exon (NM_001315508, exon 30 of 36) exon (NM_001315508, exon 30 of 36) 73466 NM_001363743 427 Hs.527412 NM_004315 ENSG00000104763 ASAH1 AC|ACDase|ASAH|PHP|PHP32|SMAPME N-acylsphingosine amidohydrolase 1 protein-coding 246.667-10 chr16 54299209 54299523 + 1.66667 NA Intergenic MER58A|DNA|hAT-Charlie -12579 NM_024336 79191 Hs.499205 NM_024336 ENSG00000177508 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 306-15 chr9 92416740 92417022 + 1.66667 NA exon (NM_005014, exon 2 of 3) exon (NM_005014, exon 2 of 3) 7673 NM_005014 4958 Hs.94070 NM_005014 ENSG00000127083 OMD OSAD|SLRR2C osteomodulin protein-coding 449.667 chr5 111045354 111045846 + 1.66667 NA Intergenic A-rich|Low_complexity|Low_complexity -24480 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 267.501-5 chr8 76462370 76462922 + 1.66667 NA intron (NR_105006, intron 2 of 5) LFSINE_Vert|SINE|tRNA 55992 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 279.667-6 chr14 71794273 71794599 + 1.66667 NA Intergenic AluSp|SINE|Alu -137735 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 283.334-10 chr7 62583381 62583679 + 1.66667 NA Intergenic ALR/Alpha|Satellite|centr 720526 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 307.667-8 chr2 116811514 116811879 + 1.66667 NA Intergenic MamGypLTR3a|LTR|Gypsy -1002995 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 202.833-13 chr17 49372630 49372870 + 1.66667 NA intron (NR_110883, intron 2 of 4) intron (NR_110883, intron 2 of 4) -10277 NM_014897 22834 Hs.463375 NM_014897 ENSG00000198740 ZNF652 - zinc finger protein 652 protein-coding 343-8 chr6 148016990 148017381 + 1.66667 NA Intergenic Intergenic -255143 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 211.667-2 chr1 54450254 54450709 + 1.66667 NA Intergenic L1M5|LINE|L1 -44087 NM_018070 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 288.334-4 chr7 3478208 3478470 + 1.66667 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 177087 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 214.167 chr1 97646452 97646646 + 1.66667 NA intron (NM_000110, intron 8 of 22) L1M7|LINE|L1 -150372 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 265-7 chr14 43397410 43397698 + 1.66667 NA Intergenic L2a|LINE|L2 1109729 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 285.834-5 chr6 150786145 150786383 + 1.66667 NA intron (NM_001329803, intron 3 of 13) intron (NM_001329803, intron 3 of 13) 65165 NM_001329801 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 197-49 chr8 85335204 85335455 + 1.66667 NA intron (NM_001291968, intron 2 of 5) MIR|SINE|MIR 6385 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 195.834-4 chr6 118174248 118174384 + 1.66667 NA intron (NM_001029858, intron 2 of 7) L1MEf|LINE|L1 88413 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 228.333-35 chr7 33242106 33242355 + 1.66667 NA intron (NM_198428, intron 5 of 22) L1ME4a|LINE|L1 112666 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 290.834-8 chr5 27840073 27840259 + 1.66667 NA Intergenic Intergenic 367874 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 216.667-29 chr4 17220042 17220257 + 1.66667 NA Intergenic Intergenic -34092 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 264.334-3 chr2 60174888 60175161 + 1.66667 NA Intergenic L2a|LINE|L2 208012 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 325-3 chr8 98837611 98837984 + 1.66667 NA intron (NM_001256312, intron 3 of 12) AluJr|SINE|Alu -12109 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 372-9 chr9 36795273 36795712 + 1.66667 NA Intergenic L2c|LINE|L2 28107 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 263.334-3 chr17 70094260 70094470 + 1.66667 NA intron (NM_001270422, intron 1 of 5) intron (NM_001270422, intron 1 of 5) -10480 NM_001291623 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 280-10 chr2 143833487 143833768 + 1.66667 NA Intergenic Intergenic -103440 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 296.834-3 chr4 98660631 98660835 + 1.66667 NA intron (NR_148380, intron 1 of 2) L1MC1|LINE|L1 1831 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 148.333-107 chr8 113746242 113746373 + 1.66667 NA Intergenic Intergenic -309368 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 203-46 chr8 108388125 108388327 + 1.66667 NA Intergenic Intergenic -55357 NM_001329493 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 300.667-3 chr19 28384959 28385192 + 1.66667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -221613 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 486.667 chr2 66161643 66162197 + 1.66667 NA Intergenic L1MEf|LINE|L1 196408 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 239.334 chr14 46719141 46719352 + 1.66667 NA Intergenic Intergenic -67465 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 408.666-2 chr12 107998080 107998521 + 1.66667 NA Intergenic L1MA5|LINE|L1 -94529 NR_037629 728739 Hs.741995 NR_037629 LOC728739 - programmed cell death 2 pseudogene pseudo 304.667-15 chr5 94527280 94527497 + 1.66667 NA intron (NM_001145678, intron 3 of 20) intron (NM_001145678, intron 3 of 20) 91216 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 143-79 chr8 112161481 112161673 + 1.66667 NA Intergenic Intergenic -481916 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 282-17 chr3 67864472 67864776 + 1.66667 NA intron (NR_109992, intron 5 of 6) intron (NR_109992, intron 5 of 6) -126968 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 216.167-21 chr4 36787118 36787343 + 1.66667 NA Intergenic Intergenic -145330 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 208.334-2 chr2 86473176 86473376 + 1.66667 NA intron (NM_018433, intron 11 of 25) AluJr4|SINE|Alu 31815 NM_001146688 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 149.834-5 chr18 1625236 1625378 + 1.66667 NA Intergenic L1M4a1|LINE|L1 -265678 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 304.5-6 chr2 135911937 135912411 + 1.66667 NA intron (NM_001293312, intron 12 of 14) intron (NM_001293312, intron 12 of 14) -35731 NM_005915 4175 Hs.444118 NM_005915 ENSG00000076003 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 240.333-26 chr8 46857355 46857654 + 1.66667 NA Intergenic BSR/Beta|Satellite|Satellite 16618 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 278.333-12 chr4 96566590 96566864 + 1.66667 NA intron (NR_147149, intron 2 of 3) HAL1ME|LINE|L1 256024 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 190.834-9 chr8 80984480 80984608 + 1.66667 NA intron (NM_018440, intron 7 of 8) intron (NM_018440, intron 7 of 8) -109763 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 322.667-6 chr7 61739791 61740205 + 1.66667 NA Intergenic ALR/Alpha|Satellite|centr 1564058 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 164.334-11 chr7 10994033 10994167 + 1.66667 NA intron (NR_033436, intron 3 of 16) L2a|LINE|L2 20228 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 268.333-14 chr7 33452550 33452775 + 1.66667 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 323098 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 134.334-6 chr8 136542569 136542666 + 1.66667 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 11819 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 186.667-59 chr4 111936263 111936481 + 1.66667 NA Intergenic Intergenic -209082 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 215-18 chr2 76524431 76524591 + 1.66667 NA Intergenic Intergenic -461454 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 140-80 chr8 89514104 89514223 + 1.66667 NA Intergenic Intergenic 243548 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 423.834-2 chr21 28298506 28299053 + 1.66667 NA Intergenic Intergenic -70112 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 207.334-9 chr8 122477848 122478220 + 1.66667 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 90610 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 215.834-4 chr20 34374441 34374635 + 1.66667 NA intron (NM_001257137, intron 2 of 25) intron (NM_001257137, intron 2 of 25) 11265 NM_001257138 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH ADMFD|AIF4|AIP4|NAPP1 itchy E3 ubiquitin protein ligase protein-coding 173.667-11 chr12 25091143 25091345 + 1.66667 NA intron (NR_159367, intron 13 of 19) L1MB2|LINE|L1 38538 NM_006152 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 587.667 chr1 57445895 57446327 + 1.66667 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -21190 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 176.834-4 chr2 145170262 145170435 + 1.66667 NA Intergenic Intergenic 502381 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 183.333-58 chr7 113338056 113338255 + 1.66667 NA Intergenic MER117|DNA|hAT-Charlie -219573 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 324.667 chr14 44758985 44759197 + 1.66667 NA Intergenic L1MA9|LINE|L1 40035 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 387.001 chrX 90020307 90020676 + 1.66667 NA Intergenic L1MA6|LINE|L1 98583 NM_138960 90316 Hs.592220 NM_138960 ENSG00000153779 TGIF2LX TGIFLX TGFB induced factor homeobox 2 like X-linked protein-coding 229-40 chr7 3365478 3365716 + 1.66667 NA intron (NM_152744, intron 1 of 44) L1MC5a|LINE|L1 64345 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 335.334-3 chr7 36023497 36023866 + 1.66667 NA Intergenic Intergenic -71629 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 294.334-2 chr12 22220139 22220423 + 1.66667 NA intron (NM_003034, intron 4 of 4) intron (NM_003034, intron 4 of 4) 114433 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 329.667-7 chr5 26382760 26382988 + 1.66667 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 655712 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 281.167-12 chr8 18952286 18952691 + 1.66667 NA intron (NM_015310, intron 1 of 15) intron (NM_015310, intron 1 of 15) 61215 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 271.666-6 chr8 78835491 78835877 + 1.66667 NA Intergenic Intergenic -1845 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 170-45 chr21 30158092 30158294 + 1.66667 NA Intergenic Intergenic 8612 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 310.334-2 chr17 69331963 69332310 + 1.66667 NA Intergenic L3|LINE|CR1 -5003 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 361.5 chr1 62365882 62366333 + 1.66667 NA Intergenic Intergenic -46673 NM_181712 163782 Hs.283398 NM_181712 ENSG00000132854 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 274.667-7 chr15 69179113 69179394 + 1.66667 NA intron (NM_001324093, intron 2 of 5) intron (NM_001324093, intron 2 of 5) 18618 NM_001324092 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 285 chr10 31322412 31322647 + 1.66667 NA intron (NM_001323675, intron 1 of 6) intron (NM_001323675, intron 1 of 6) 869 NM_001323672 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 312.666-5 chr9 74439600 74440226 + 1.66667 NA Intergenic L1MEi|LINE|L1 -57422 NM_006914 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 375-2 chr20 23461184 23461573 + 1.66667 NA Intergenic Tigger1|DNA|TcMar-Tigger -8502 NM_130794 140880 Hs.128100 NM_080830 ENSG00000125831 CST11 CST8L|CTES2|SC13|dJ322G13.6 cystatin 11 protein-coding 498-2 chr20 35374185 35374668 + 1.66667 NA intron (NM_001184977, intron 2 of 7) intron (NM_001184977, intron 2 of 7) 37547 NM_018244 55245 Hs.726290 NM_018244 ENSG00000101019 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 315.167-15 chr9 103817673 103817931 + 1.66667 NA Intergenic Intergenic -181907 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 385.834-3 chr8 117710275 117710708 + 1.66667 NA Intergenic Intergenic 189778 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 175.667-40 chr3 2299657 2299811 + 1.66667 NA intron (NM_001206955, intron 1 of 23) intron (NM_001206955, intron 1 of 23) 60905 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 207.167-5 chr10 52862774 52863027 + 1.66667 NA Intergenic Intergenic -91200 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 214-39 chr5 143946495 143946682 + 1.66667 NA Intergenic L1PA15|LINE|L1 134427 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 410 chr12 38567549 38568070 + 1.66667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 251035 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 250.834 chr1 216092446 216092671 + 1.66667 NA intron (NM_206933, intron 22 of 71) intron (NM_206933, intron 22 of 71) 20093 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 228.833-6 chr17 53248938 53249146 + 1.66667 NA Intergenic ERVL-B4-int|LTR|ERVL 263537 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 209-22 chr17 58772555 58772701 + 1.66667 NA intron (NM_014906, intron 1 of 6) L2c|LINE|L2 16759 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 204.667-32 chr3 82985546 82985757 + 1.66667 NA Intergenic Intergenic 999509 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 349 chr1 35959997 35960423 + 1.66667 NA intron (NM_177422, intron 2 of 16) intron (NM_177422, intron 2 of 16) 29105 NM_024852 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 222-7 chr11 79308863 79309085 + 1.66667 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 93135 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 274.667-11 chr5 99919202 99919506 + 1.66667 NA Intergenic Intergenic 385364 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 318.5-7 chr22 19511459 19511891 + 1.66667 NA intron (NR_161281, intron 13 of 16) L1MB8|LINE|L1 12735 NM_001363066 7122 Hs.505337 NM_003277 ENSG00000184113 CLDN5 AWAL|BEC1|CPETRL1|TMDVCF|TMVCF claudin 5 protein-coding 203.5-22 chr2 113273399 113273649 + 1.66667 NA intron (NM_013952, intron 2 of 11) intron (NM_013952, intron 2 of 11) 5397 NM_013992 7849 Hs.469728 NM_003466 ENSG00000125618 PAX8 - paired box 8 protein-coding 216-12 chr16 65508134 65508383 + 1.66667 NA intron (NR_027755, intron 2 of 8) L2b|LINE|L2 68042 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 402.334 chr5 124072325 124072822 + 1.66667 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 365947 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 223-7 chr12 6414653 6414817 + 1.66667 NA Intergenic L1MCa|LINE|L1 -30150 NM_001242 939 Hs.355307 NM_001242 ENSG00000139193 CD27 S152|S152. LPFS2|T14|TNFRSF7|Tp55 CD27 molecule protein-coding 276.334-3 chr5 65472966 65473213 + 1.66667 NA intron (NR_135689, intron 2 of 25) intron (NR_135689, intron 2 of 25) 8831 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 312.333-3 chr11 28506051 28506361 + 1.66667 NA Intergenic Intergenic -28658 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 191.834-8 chr8 77396785 77397038 + 1.66667 NA Intergenic Intergenic -53786 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 246.5 chr1 32385160 32385511 + 1.66667 NA intron (NM_001143888, intron 3 of 10) L1PA17|LINE|L1 9106 NR_125352 55108 Hs.353454 NM_018045 ENSG00000160058 BSDC1 - BSD domain containing 1 protein-coding 135-79 chr5 117044950 117045079 + 1.66667 NA Intergenic Intergenic -282805 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 239.667-20 chr21 29712437 29712676 + 1.66667 NA intron (NM_000830, intron 1 of 16) L1ME4a|LINE|L1 -35619 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 346.168 chr11 108867253 108867511 + 1.66667 NA intron (NM_004398, intron 16 of 17) intron (NM_004398, intron 16 of 17) 202313 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 221.5-13 chr17 59674303 59674904 + 1.66667 NA intron (NM_001288653, intron 15 of 31) intron (NM_001288653, intron 15 of 31) 32995 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 281-4 chr10 31406850 31407112 + 1.66667 NA intron (NM_001323646, intron 4 of 11) L1PA7|LINE|L1 -7226 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 173.5-13 chr11 36786382 36786526 + 1.66667 NA Intergenic Intergenic -188175 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 200.667-19 chr12 23417332 23417565 + 1.66667 NA Intergenic Intergenic 167138 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 353.5-7 chr6 50626323 50626827 + 1.66667 NA Intergenic L1PB1|LINE|L1 -86969 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 280-9 chr2 136396328 136396618 + 1.66667 NA Intergenic L1MB8|LINE|L1 -278318 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 313.667-7 chr18 7438765 7438990 + 1.66667 NA Intergenic Intergenic 22129 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 415.667 chr3 97463138 97463452 + 1.66667 NA intron (NM_001080448, intron 7 of 17) intron (NM_001080448, intron 7 of 17) 23688 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 425.334-3 chr8 114280517 114280916 + 1.66667 NA Intergenic Intergenic -843777 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 440 chr5 29565199 29565673 + 1.66667 NA Intergenic Intergenic -169460 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 213.834-2 chr10 26068097 26068334 + 1.66667 NA intron (NM_017433, intron 11 of 34) intron (NM_017433, intron 11 of 34) 133986 NM_001368265 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 459.667 chr2 173638501 173639091 + 1.66667 NA Intergenic L1ME1|LINE|L1 283924 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 390.001 chr16 59581047 59581330 + 1.66667 NA Intergenic Intergenic 174003 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 254.167-14 chr5 46225196 46225449 + 1.66667 NA Intergenic ALR/Alpha|Satellite|centr -528942 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 222.667-22 chr2 111695919 111696398 + 1.66667 NA Intergenic L1MD2|LINE|L1 74976 NR_039929 100616165 NR_039929 ENSG00000266063 MIR4771-2 - microRNA 4771-2 ncRNA 286.667-16 chr8 123478226 123478480 + 1.66667 NA Intergenic L2a|LINE|L2 53790 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 344.167-6 chr8 124159493 124159804 + 1.66667 NA intron (NR_103547, intron 1 of 4) intron (NR_103547, intron 1 of 4) 11874 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 219.5-3 chr1 190575652 190575886 + 1.66667 NA Intergenic LTR106_Mam|LTR|LTR -49121 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 248.334 chr4 110912800 110913151 + 1.66667 NA Intergenic Intergenic -52328 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 274.667-12 chr7 72461193 72461367 + 1.66667 NA Intergenic L1PA17|LINE|L1 -14137 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 254.167-18 chr7 146300895 146301049 + 1.66667 NA Intergenic Intergenic -473299 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 270.334-10 chr4 187087378 187087632 + 1.66667 NA Intergenic Intergenic -114481 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 279.334-3 chr14 45649063 45649492 + 1.66667 NA Intergenic ERVL-E-int|LTR|ERVL 66325 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 157-84 chr8 136321111 136321231 + 1.66667 NA Intergenic Intergenic -209627 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 199.666-3 chr8 112026994 112027165 + 1.66667 NA Intergenic Intergenic -616414 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 444.333-2 chr5 133465989 133466375 + 1.66667 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -38476 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 182.5-17 chr18 13405223 13405469 + 1.66667 NA intron (NM_181482, intron 3 of 5) MIRb|SINE|MIR 22188 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 272-10 chr5 27268220 27268495 + 1.66667 NA Intergenic Intergenic -203935 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 221.667-33 chr5 162649578 162649787 + 1.66667 NA Intergenic Intergenic 582040 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 291.667-19 chr4 66580027 66580306 + 1.66667 NA Intergenic Intergenic 303342 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 190-38 chr22 42543722 42543900 + 1.66667 NA Intergenic MER57D|LTR|ERV1 -10145 NM_001284334 253190 Hs.728878 NM_014509 ENSG00000183569 SERHL2 dJ222E13.1 serine hydrolase like 2 protein-coding 291.834-5 chr7 50897243 50897488 + 1.66667 NA Intergenic L1PA16|LINE|L1 -103912 NM_001371008 224.334-7 chr8 105837026 105837220 + 1.66667 NA intron (NR_125796, intron 2 of 7) intron (NR_125796, intron 2 of 7) 223380 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 502.501 chr8 140329920 140330641 + 1.66667 NA intron (NM_001160372, intron 9 of 22) intron (NM_001160372, intron 9 of 22) 127464 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 240-30 chr5 168936023 168936249 + 1.66667 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) -77091 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 338.334-3 chr2 41810250 41810561 + 1.66667 NA Intergenic L1MA10|LINE|L1 -67150 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 259.666-4 chr5 19098660 19098928 + 1.66667 NA Intergenic Tigger1|DNA|TcMar-Tigger 787478 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 333-6 chr5 32951023 32951359 + 1.66667 NA intron (NR_033832, intron 3 of 5) LTR16A2|LTR|ERVL 3748 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 233.334-10 chrX 66819365 66819604 + 1.66667 NA Intergenic L1MA2|LINE|L1 -180186 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 227.667-11 chr17 14725722 14725865 + 1.66667 NA Intergenic L1ME4a|LINE|L1 -289012 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 131.667-25 chr12 15276535 15276670 + 1.66667 NA Intergenic Intergenic -45906 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 340.333-4 chr11 92609758 92609999 + 1.66667 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 257782 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 316.834-3 chr15 91523855 91524159 + 1.66667 NA Intergenic Intergenic 60668 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 158.667-6 chr1 216443866 216444056 + 1.66667 NA Intergenic L1ME3A|LINE|L1 -20513 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 506.667 chr12 10771709 10772331 + 1.66667 NA intron (NR_120463, intron 2 of 6) intron (NR_120463, intron 2 of 6) 21786 NR_120463 101928162 Hs.112950 NR_120463 ENSG00000256888 LINC02366 - long intergenic non-protein coding RNA 2366 ncRNA 228.667-36 chr8 86584100 86584559 + 1.66667 NA intron (NM_019098, intron 15 of 17) intron (NM_019098, intron 15 of 17) 69894 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 306-2 chr10 48432583 48432856 + 1.66667 NA intron (NM_001323331, intron 12 of 12) intron (NM_001323331, intron 12 of 12) 31107 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 387.667-2 chr1 211623377 211623827 + 1.66667 NA Intergenic Intergenic -16206 NR_131925 105748977 Hs.553186 NR_131925 LINC01693 - long intergenic non-protein coding RNA 1693 ncRNA 285.167-3 chr2 158714986 158715293 + 1.66667 NA intron (NR_135242, intron 1 of 3) intron (NR_135242, intron 1 of 3) 19863 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 347.501-2 chr8 113231807 113232191 + 1.66667 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 145153 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 393.5 chr17 18044213 18044834 + 1.66667 NA intron (NM_024052, intron 1 of 5) intron (NM_024052, intron 1 of 5) 5115 NM_024052 79018 Hs.187422 NM_024052 ENSG00000141034 GID4 C17orf39|VID2|VID24 GID complex subunit 4 homolog protein-coding 423.834 chr11 99527272 99527675 + 1.66667 NA intron (NM_001243271, intron 2 of 20) L1M7|LINE|L1 -28672 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 190.834-8 chr6 109205897 109206349 + 1.66667 NA intron (NR_152435, intron 9 of 45) intron (NR_152435, intron 9 of 45) 40292 NR_152435 221262 Hs.373914 NM_173671 ENSG00000203799 CCDC162P C6orf183|C6orf184|C6orf185|CCDC162 coiled-coil domain containing 162, pseudogene pseudo 363.001 chr7 49052411 49052755 + 1.66667 NA Intergenic (TTAT)n|Simple_repeat|Simple_repeat 128036 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 331.334-2 chr2 81962169 81962683 + 1.66667 NA Intergenic Intergenic -495480 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 307.833-11 chr8 119759860 119760438 + 1.66667 NA intron (NM_003184, intron 20 of 25) intron (NM_003184, intron 20 of 25) 72692 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 418.334-2 chr4 67627992 67628462 + 1.66667 NA intron (NM_018227, intron 27 of 32) L2a|LINE|L2 69500 NM_001317769 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 373.334 chr1 153667934 153668408 + 1.66667 NA intron (NM_004515, intron 4 of 13) intron (NM_004515, intron 4 of 13) 2822 NM_004515 3608 Hs.75117 NM_004515 ENSG00000143621 ILF2 NF45|PRO3063 interleukin enhancer binding factor 2 protein-coding 515.334-2 chr11 11092779 11093348 + 1.66667 NA Intergenic AluSc|SINE|Alu 234846 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 363.667 chr1 55799611 55800018 + 1.66667 NA Intergenic L1P4|LINE|L1 145149 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 282.334 chr13 61475806 61475992 + 1.66667 NA Intergenic L1ME3Cz|LINE|L1 -47953 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 388.667-2 chr3 110092687 110093101 + 1.66667 NA Intergenic L2a|LINE|L2 490066 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 231-19 chr3 168446990 168447172 + 1.66667 NA intron (NR_021485, intron 3 of 15) MIR|SINE|MIR -104773 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 233.334-3 chr13 75298043 75298352 + 1.66667 NA intron (NM_001286658, intron 16 of 19) intron (NM_001286658, intron 16 of 19) 57609 NR_132375 106144536 Hs.591226 NR_132375 LINC01078 - long intergenic non-protein coding RNA 1078 ncRNA 230.5-11 chr3 121833997 121834206 + 1.66667 NA intron (NM_001023571, intron 2 of 11) intron (NM_001023571, intron 2 of 11) 959 NM_001023570 9657 Hs.604110 NM_001023570 ENSG00000173226 IQCB1 NPHP5|PIQ|SLSN5 IQ motif containing B1 protein-coding 213.333-41 chr7 38083267 38083473 + 1.66667 NA Intergenic Intergenic -94875 NM_001363347 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 272.334-4 chr6 55758277 55758457 + 1.66667 NA intron (NM_001329756, intron 4 of 4) intron (NM_001329756, intron 4 of 4) 117223 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 269.501-2 chr7 11236450 11236668 + 1.66667 NA Intergenic Intergenic 262687 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 339-3 chr12 20227795 20228069 + 1.66667 NA Intergenic L1MC1|LINE|L1 -100031 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 265.834-3 chr9 75623306 75623533 + 1.66667 NA Intergenic L1PREC2|LINE|L1 -267225 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 350.334 chr18 544531 544928 + 1.66667 NA Intergenic Intergenic -29435 NR_136505 105376854 NR_136505 ENSG00000264265 LINC01925 - long intergenic non-protein coding RNA 1925 ncRNA 354.167 chr1 239458499 239458878 + 1.66667 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 72120 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 209-39 chr5 161062495 161062751 + 1.66667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -123997 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 317.001 chr14 84013974 84014243 + 1.66667 NA Intergenic Intergenic -1257824 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 227.667-31 chr9 91571017 91571208 + 1.66667 NA Intergenic Intergenic -65139 NR_037472 100500821 NR_037472 ENSG00000266855 MIR3910-1 mir-3910-1 microRNA 3910-1 ncRNA 202-3 chr10 95983838 95984047 + 1.66667 NA intron (NM_001349008, intron 19 of 34) intron (NM_001349008, intron 19 of 34) -16149 NM_001159747 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 259.501-2 chr2 49754155 49754365 + 1.66667 NA Intergenic L2a|LINE|L2 219943 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 265.833-3 chr14 63133209 63133555 + 1.66667 NA Intergenic L1MA9|LINE|L1 -71061 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 214.834-5 chr2 17248121 17248266 + 1.66667 NA Intergenic Intergenic 270247 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 218-15 chr14 78430583 78430924 + 1.66667 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 27034 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 421.667-2 chr5 107118900 107119340 + 1.66667 NA Intergenic AluJo|SINE|Alu -108106 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 309 chr10 86462896 86463194 + 1.66667 NA intron (NM_001318328, intron 9 of 18) intron (NM_001318328, intron 9 of 18) 58739 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 432-2 chr7 70756083 70756683 + 1.66667 NA intron (NM_015570, intron 6 of 18) intron (NM_015570, intron 6 of 18) -375761 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 409.167-2 chr4 58678298 58678765 + 1.66667 NA Intergenic LTR49-int|LTR|ERV1 -142203 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 348.834 chr13 70996611 70997028 + 1.66667 NA Intergenic L1M4a1|LINE|L1 -18322 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 270.833-15 chr21 27741510 27741775 + 1.66667 NA intron (NR_024357, intron 1 of 3) L1MA2|LINE|L1 19263 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 404.334 chr1 60795388 60795781 + 1.66667 NA intron (NR_110628, intron 1 of 5) L2c|LINE|L2 30000 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 201-10 chr10 82937029 82937193 + 1.66667 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -704191 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 537.667 chr20 12279361 12279839 + 1.66667 NA Intergenic L1MA3|LINE|L1 361707 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 287-11 chr7 53605615 53605857 + 1.66667 NA Intergenic L1P4a|LINE|L1 206195 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 452 chr14 75339317 75340168 + 1.66667 NA Intergenic MIR3|SINE|MIR 45338 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 306-4 chr10 98736309 98736522 + 1.66667 NA intron (NM_001166245, intron 2 of 9) intron (NM_001166245, intron 2 of 9) 188153 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 328.834 chr14 46177422 46177758 + 1.66667 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 113431 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 223.667-5 chr10 92053238 92053394 + 1.66667 NA intron (NM_001178137, intron 9 of 9) intron (NM_001178137, intron 9 of 9) 129546 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 167.5-15 chr11 14642387 14642518 + 1.66667 NA intron (NM_148976, intron 1 of 10) intron (NM_148976, intron 1 of 10) 1182 NM_148976 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 181.334-7 chr8 121396455 121396634 + 1.66667 NA Intergenic Charlie7|DNA|hAT-Charlie -242802 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 295.667-10 chr7 55156886 55157453 + 1.66667 NA TTS (NM_201283) TTS (NM_201283) 31780 NR_047551 100507500 Hs.720489 NR_047551 ENSG00000224057 EGFR-AS1 - EGFR antisense RNA 1 ncRNA 265-8 chr14 57075310 57075561 + 1.66667 NA Intergenic Intergenic 193470 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 128.333-60 chr2 65072933 65073070 + 1.66667 NA intron (NR_134966, intron 3 of 5) intron (NR_134966, intron 3 of 5) 16585 NM_001319101 23177 Hs.709257 NM_015147 ENSG00000011523 CEP68 KIAA0582 centrosomal protein 68 protein-coding 333-7 chr5 143241820 143242105 + 1.66667 NA Intergenic L1MC4|LINE|L1 49462 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 202.667-43 chr7 45945100 45945269 + 1.66667 NA Intergenic L1MEg|LINE|L1 -23912 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 114.667-96 chr4 125667037 125667124 + 1.66667 NA Intergenic MIR|SINE|MIR 159821 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 137.333-79 chr5 112091991 112092155 + 1.66667 NA Intergenic L1MA2|LINE|L1 -68453 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 296.667-4 chr12 61783261 61783477 + 1.66667 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 409470 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 277.501 chr10 18126612 18126784 + 1.66667 NA Intergenic L1M4|LINE|L1 -13726 NM_201593 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 226.334-11 chr9 121919414 121919613 + 1.66667 NA intron (NM_001139442, intron 6 of 8) L4_A_Mam|LINE|RTE-X 174093 NM_001139442 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 415 chr4 171786413 171786874 + 1.66667 NA Intergenic Intergenic -26761 NM_001034845 442117 Hs.386236 NM_001034845 ENSG00000174473 GALNTL6 GALNACT20|GALNT17|GalNAc-T6L polypeptide N-acetylgalactosaminyltransferase like 6 protein-coding 400-3 chr19 28536916 28537233 + 1.66667 NA intron (NR_110759, intron 5 of 9) L1MEf|LINE|L1 -69614 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 196-37 chr2 162613421 162613648 + 1.66667 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -155402 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 376.334-3 chr3 131463641 131463900 + 1.66667 NA intron (NM_007208, intron 9 of 9) intron (NM_007208, intron 9 of 9) 15463 NR_002985 677836 Hs.735762 NR_002985 SNORA58 ACA58|SNORA58B small nucleolar RNA, H/ACA box 58 snoRNA 282-8 chr12 81586001 81586219 + 1.66667 NA intron (NM_001220474, intron 2 of 30) intron (NM_001220474, intron 2 of 30) 12261 NM_001220477 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 232.334-3 chr2 51809834 51810319 + 1.66667 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -560572 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 351.834 chr12 5390877 5391330 + 1.66667 NA Intergenic Intergenic -41005 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 308.167-6 chr7 43309287 43309565 + 1.66667 NA intron (NM_001287059, intron 2 of 27) intron (NM_001287059, intron 2 of 27) 158531 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 246.667-20 chr5 26929055 26929304 + 1.66667 NA intron (NM_016279, intron 2 of 11) L1MA3|LINE|L1 109407 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 289.834-3 chr10 108627813 108628112 + 1.66667 NA Intergenic Intergenic -558669 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 427.666 chr5 26550331 26551051 + 1.66667 NA Intergenic L1MA8|LINE|L1 487895 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 299.667-9 chr2 232941739 232941980 + 1.66667 NA intron (NM_019850, intron 3 of 14) intron (NM_019850, intron 3 of 14) -13708 NM_001114090 25791 Hs.97316 NM_019850 ENSG00000066248 NGEF ARHGEF27|EPHEXIN neuronal guanine nucleotide exchange factor protein-coding 344.667-3 chr4 69586849 69587222 + 1.66667 NA Intergenic L1MB8|LINE|L1 52607 NM_001301233 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 318.834-5 chr2 79225112 79225335 + 1.66667 NA Intergenic L1ME2z|LINE|L1 -65470 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 253.667-17 chr6 104766337 104766597 + 1.66667 NA intron (NR_146792, intron 20 of 24) intron (NR_146792, intron 20 of 24) 93079 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 567.666 chr5 25231982 25232459 + 1.66667 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 41267 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 305.334-4 chr21 27441989 27442245 + 1.66667 NA Intergenic Intergenic -280262 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 349.167-3 chr12 40724495 40724869 + 1.66667 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) 32240 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 274.167-5 chr5 20436692 20436926 + 1.66667 NA intron (NM_001349558, intron 1 of 15) A-rich|Low_complexity|Low_complexity 131258 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 276-16 chr7 34245215 34245430 + 1.66667 NA Intergenic Intergenic 339783 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 140-52 chr3 104018786 104018933 + 1.66667 NA Intergenic Intergenic -494743 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 380-2 chr5 26206669 26206915 + 1.66667 NA Intergenic MamGyp-int|LTR|Gypsy 831794 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 253.334-6 chr5 69113065 69113476 + 1.66667 NA intron (NM_022902, intron 6 of 15) intron (NM_022902, intron 6 of 15) 19256 NM_022902 64924 Hs.631975 NM_022902 ENSG00000145740 SLC30A5 ZNT5|ZNTL1|ZTL1|ZnT-5 solute carrier family 30 member 5 protein-coding 437.834 chr14 71023808 71024295 + 1.66667 NA intron (NM_014982, intron 13 of 35) L1MC4|LINE|L1 116592 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 256.5-10 chr16 82445787 82446080 + 1.66667 NA Intergenic L1ME3A|LINE|L1 -181036 NM_001220488 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 166-40 chr3 84975593 84975809 + 1.66667 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 16712 NM_001167674 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 315.167-4 chr11 23869667 23869935 + 1.66667 NA Intergenic Intergenic -450611 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 363.167-2 chr16 76859332 76859657 + 1.66667 NA Intergenic L1PBa|LINE|L1 -9442 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 153-27 chr2 64875556 64875803 + 1.66667 NA Intergenic Intergenic -12048 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 184.667-4 chr1 218785559 218785765 + 1.66667 NA intron (NR_031644, intron 4 of 6) L1ME2|LINE|L1 132849 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 271.667-3 chr12 42425598 42425865 + 1.66667 NA intron (NM_016488, intron 9 of 12) intron (NM_016488, intron 9 of 12) 57884 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 380.667-4 chr3 22363673 22363966 + 1.66667 NA Intergenic L1ME3A|LINE|L1 406680 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 184.167-36 chr4 41625267 41625408 + 1.66667 NA intron (NM_001330672, intron 7 of 31) intron (NM_001330672, intron 7 of 31) 12435 NM_001330983 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 240.667-8 chr11 19234428 19234629 + 1.66667 NA intron (NM_001256372, intron 5 of 12) intron (NM_001256372, intron 5 of 12) 6417 NM_024680 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 291.334-6 chr2 29549429 29549616 + 1.66667 NA intron (NM_004304, intron 3 of 28) Charlie5|DNA|hAT-Charlie -74145 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 343.333-2 chr3 97987963 97988368 + 1.66667 NA intron (NM_001105580, intron 9 of 9) intron (NM_001105580, intron 9 of 9) -15714 NM_001042533 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 274.167-9 chr9 75783216 75783564 + 1.66667 NA Intergenic L1PA15|LINE|L1 -107254 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 194.334-4 chr4 35046049 35046201 + 1.66667 NA Intergenic Intergenic -776378 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 323.667-2 chr1 214875209 214875549 + 1.66667 NA Intergenic Intergenic -130163 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 175.666 chr17 69850401 69850697 + 1.66667 NA intron (NR_109972, intron 4 of 4) L1MB3|LINE|L1 -111158 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 693.668 chr1 40605453 40606065 + 1.66667 NA Intergenic AluJb|SINE|Alu 59923 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM 3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 385.833-3 chr9 29978743 29979173 + 1.66667 NA Intergenic Intergenic 429496 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 209.5-39 chr7 84638106 84638273 + 1.66667 NA Intergenic CR1-3_Croc|LINE|CR1 105713 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 406-3 chr5 133260480 133260905 + 1.66667 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 167014 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 349.167-2 chr1 95662967 95663322 + 1.66667 NA Intergenic L1MA9|LINE|L1 153028 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 304.334-2 chr4 21892455 21892766 + 1.66667 NA intron (NM_147182, intron 1 of 8) intron (NM_147182, intron 1 of 8) -39422 NR_002813 359822 Hs.354058 NR_002813 ENSG00000280650 KCNIP4-IT1 NCRNA00099|UM9(5)|UM9-5 KCNIP4 intronic transcript 1 ncRNA 315.834-2 chr1 218005617 218005891 + 1.66667 NA Intergenic L2|LINE|L2 -37751 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 268.333-2 chr1 77231143 77231436 + 1.66667 NA Intergenic Intergenic -11859 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 302.501-4 chrX 11060010 11060492 + 1.66667 NA Intergenic Intergenic -51081 NM_005333 3052 Hs.211571 NM_005333 ENSG00000004961 HCCS CCHL|LSDMCA1|MCOPS7|MLS holocytochrome c synthase protein-coding 215-10 chr11 70094741 70094951 + 1.66667 NA intron (NM_018043, intron 2 of 25) intron (NM_018043, intron 2 of 25) 9436 NR_030691 55107 Hs.503074 NM_018043 ENSG00000131620 ANO1 DOG1|ORAOV2|TAOS2|TMEM16A anoctamin 1 protein-coding 198.167-37 chr8 118388283 118388508 + 1.66667 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -232606 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 270.334-6 chr16 61750387 61750687 + 1.66667 NA intron (NM_001796, intron 8 of 11) intron (NM_001796, intron 8 of 11) 285901 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 263.334-5 chr8 111261662 111261889 + 1.66667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -25572 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 393.167-4 chr8 139305954 139306559 + 1.66667 NA Intergenic LTR81B|LTR|Gypsy -392215 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 197.5-12 chr11 35716711 35716919 + 1.66667 NA intron (NM_017583, intron 2 of 4) MIR|SINE|MIR 54040 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 292.333-8 chr4 34972892 34973204 + 1.66667 NA Intergenic Intergenic -703301 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 306.834-3 chr3 8237336 8237574 + 1.66667 NA intron (NR_033378, intron 3 of 3) L1MCa|LINE|L1 -221148 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 292.834-3 chr14 52857275 52857554 + 1.66667 NA 3' UTR (NM_001134999, exon 16 of 16) 3' UTR (NM_001134999, exon 16 of 16) -65807 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 215.834-11 chr9 103182274 103182459 + 1.66667 NA intron (NR_121578, intron 8 of 9) L1ME4a|LINE|L1 142667 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 175.334 chr10 92931773 92932122 + 1.66667 NA intron (NM_001319200, intron 8 of 17) L1ME1|LINE|L1 83427 NM_019053 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 580.668 chr5 91526528 91526997 + 1.66667 NA Intergenic Intergenic -143445 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 308.167-7 chr9 24379553 24380024 + 1.66667 NA Intergenic LTR49-int|LTR|ERV1 165888 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 328-15 chr8 78848326 78848631 + 1.66667 NA Intergenic MER103C|DNA|hAT-Charlie 10949 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 247-6 chr13 33834958 33835208 + 1.66667 NA intron (NM_002915, intron 7 of 8) intron (NM_002915, intron 7 of 8) 16934 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 267.834-3 chr5 15857430 15857863 + 1.66667 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -77536 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 185.5-20 chr2 84619074 84619208 + 1.66667 NA intron (NM_001370, intron 23 of 76) intron (NM_001370, intron 23 of 76) 102686 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 211.333-7 chr1 163056103 163056326 + 1.66667 NA Intergenic MLT1I|LTR|ERVL-MaLR -12392 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 151-55 chr4 72648857 72649009 + 1.66667 NA Intergenic L2|LINE|L2 -79712 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 310-2 chr12 54256374 54256696 + 1.66667 NA intron (NM_012117, intron 2 of 4) intron (NM_012117, intron 2 of 4) 3010 NM_001127322 23468 Hs.349283 NM_012117 ENSG00000094916 CBX5 HEL25|HP1|HP1A chromobox 5 protein-coding 359.667-3 chr2 109707810 109708248 + 1.66667 NA Intergenic Intergenic -84729 NM_032260 84220 Hs.469630 NM_005054 ENSG00000015568 RGPD5 BS-63|BS63|HEL161|RGP5 RANBP2 like and GRIP domain containing 5 protein-coding 359.834 chr5 99200884 99201194 + 1.66667 NA Intergenic SATR1|Satellite|Satellite -271325 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 263.333-17 chr2 157219643 157219914 + 1.66667 NA Intergenic Intergenic -37927 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 420.001-2 chr8 33312763 33313189 + 1.66667 NA Intergenic Intergenic 160170 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 446.001 chr1 166684577 166684891 + 1.66667 NA Intergenic L1PA16|LINE|L1 80818 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 276-6 chr14 20338118 20338598 + 1.66667 NA Intergenic Intergenic -5046 NM_182849 57820 Hs.107003 NM_021178 ENSG00000100814 CCNB1IP1 C14orf18|HEI10 cyclin B1 interacting protein 1 protein-coding 271.667 chr1 70686702 70687017 + 1.66667 NA Intergenic Intergenic -19594 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 154.167-42 chr3 37696511 37696690 + 1.66667 NA intron (NM_002207, intron 18 of 27) L3|LINE|CR1 165180 NR_110532 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 349.167-7 chr8 144174812 144175114 + 1.66667 NA intron (NM_001099281, intron 3 of 11) intron (NM_001099281, intron 3 of 11) 26318 NM_001288814 727957 Hs.443139 NM_032450 ENSG00000179832 MROH1 HEATR7A maestro heat like repeat family member 1 protein-coding 273.167-15 chr8 114109190 114109470 + 1.66667 NA Intergenic Intergenic -672391 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 373-4 chr7 52287808 52288075 + 1.66667 NA Intergenic (ATTA)n|Simple_repeat|Simple_repeat -747692 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 340-3 chr3 109948849 109949197 + 1.66667 NA Intergenic Intergenic 346195 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 170-75 chr7 108861557 108861702 + 1.66667 NA Intergenic Intergenic 22958 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 474 chr1 113520190 113520712 + 1.66667 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 129936 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 210-3 chr11 96700134 96700337 + 1.66667 NA Intergenic ERVL-B4-int|LTR|ERVL 191810 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 155-77 chr8 131987311 131987470 + 1.66667 NA intron (NR_136616, intron 17 of 23) intron (NR_136616, intron 17 of 23) 70617 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 217.667-17 chr17 19942087 19942251 + 1.66667 NA intron (NM_007202, intron 5 of 14) A-rich|Low_complexity|Low_complexity 35659 NM_007202 11216 Hs.642676 NM_007202 ENSG00000108599 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A-kinase anchoring protein 10 protein-coding 222.667-18 chr2 60563925 60564294 + 1.66667 NA Intergenic Intergenic -10455 NM_138559 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 310.834 chr10 31684766 31685058 + 1.66667 NA Intergenic Intergenic 224014 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 235.334 chr1 102486970 102487176 + 1.66667 NA Intergenic L1M1|LINE|L1 -489839 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 772.499 chr8 88472952 88473640 + 1.66667 NA Intergenic HAL1M8|LINE|L1 -145813 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 255.5-20 chr7 21262543 21262738 + 1.66667 NA Intergenic Intergenic -165443 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 338-4 chr11 27197303 27197690 + 1.66667 NA intron (NR_125767, intron 2 of 4) intron (NR_125767, intron 2 of 4) 21272 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 345.667-5 chr21 30927233 30927555 + 1.66667 NA Intergenic L1M2|LINE|L1 -45814 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 391.167-3 chr5 112355542 112355884 + 1.66667 NA intron (NM_001347887, intron 1 of 23) intron (NM_001347887, intron 1 of 23) 63564 NR_144931 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 432.334 chr2 68262268 68262692 + 1.66667 NA Intergenic Intergenic -9948 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 230-6 chr12 19029202 19029523 + 1.66667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -100371 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 326.667 chr1 38964813 38965050 + 1.66667 NA Intergenic AluSx|SINE|Alu -23101 NM_017821 54933 Hs.524626 NM_017821 ENSG00000158315 RHBDL2 RRP2 rhomboid like 2 protein-coding 362.5-3 chr2 79416583 79416974 + 1.66667 NA Intergenic Intergenic 84066 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 389.334 chr2 193187217 193187612 + 1.66667 NA Intergenic Intergenic 437569 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 262.5-19 chr4 27226346 27226587 + 1.66667 NA intron (NR_125921, intron 1 of 5) intron (NR_125921, intron 1 of 5) 8987 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 211.667-42 chr8 83486164 83486337 + 1.66667 NA Intergenic MLT1F2|LTR|ERVL-MaLR 82492 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 250-25 chr8 60818781 60819086 + 1.66667 NA intron (NM_017780, intron 8 of 37) intron (NM_017780, intron 8 of 37) 77674 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 359 chr12 119665883 119666230 + 1.66667 NA Intergenic Intergenic -2077 NM_006253 5564 Hs.741184 NM_006253 ENSG00000111725 PRKAB1 AMPK|HAMPKb protein kinase AMP-activated non-catalytic subunit beta 1 protein-coding 481.667-2 chr5 58310500 58311066 + 1.66667 NA Intergenic L1ME3A|LINE|L1 149303 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 363.833-2 chr2 136409617 136410387 + 1.66667 NA Intergenic Intergenic -291847 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 500.334 chr15 71046898 71047274 + 1.66667 NA intron (NM_017691, intron 15 of 15) L1PA16|LINE|L1 -94363 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 195.167 chr1 183015765 183015957 + 1.66667 NA Intergenic L1ME3|LINE|L1 -7559 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 310.667-6 chr6 143763889 143764147 + 1.66667 NA intron (NM_014721, intron 5 of 12) intron (NM_014721, intron 5 of 12) -79255 NM_001329953 84946 Hs.185675 NM_032860 ENSG00000135521 LTV1 C6orf93|dJ468K18.4 LTV1 ribosome biogenesis factor protein-coding 291.334-10 chr8 129749407 129749611 + 1.66667 NA exon (NM_031415, exon 13 of 14) exon (NM_031415, exon 13 of 14) 37115 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 223.5-34 chrX 21557410 21557805 + 1.66667 NA intron (NM_001168647, intron 11 of 20) intron (NM_001168647, intron 11 of 20) 100723 NM_153270 257240 Hs.448572 NM_153270 ENSG00000185915 KLHL34 - kelch like family member 34 protein-coding 233.334 chr10 126206189 126206489 + 1.66667 NA intron (NM_001288974, intron 3 of 18) intron (NM_001288974, intron 3 of 18) 182138 NM_001288975 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 304.667-19 chr8 134083850 134084242 + 1.66667 NA Intergenic Intergenic 197550 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 281.667 chr1 171093012 171093328 + 1.66667 NA intron (NM_001319174, intron 2 of 7) L1PB3|LINE|L1 2265 NM_001319174 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 272.5-11 chr20 43505588 43505815 + 1.66667 NA Intergenic Intergenic -1996 NM_032107 26013 Hs.709356 NM_015478 ENSG00000185513 L3MBTL1 H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3 L3MBTL histone methyl-lysine binding protein 1 protein-coding 340.834-3 chr8 58928715 58928976 + 1.66667 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) 190302 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 344.834 chr10 90518195 90518520 + 1.66667 NA intron (NR_110657, intron 2 of 6) L1PA13|LINE|L1 22448 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 234.334-2 chr14 46044018 46044222 + 1.66667 NA Intergenic L1M1|LINE|L1 -20039 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 223-11 chr17 54226236 54226502 + 1.66667 NA Intergenic Intergenic 403442 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 249.667-27 chr3 55532495 55532763 + 1.66667 NA intron (NM_015576, intron 16 of 16) MIR|SINE|MIR -44987 NM_003392 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 497.834 chr2 36840404 36841260 + 1.66667 NA 3' UTR (NM_003162, exon 18 of 18) 3' UTR (NM_003162, exon 18 of 18) 125704 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 380.834-2 chr17 74804854 74805161 + 1.66667 NA intron (NM_017728, intron 8 of 9) MER5A|DNA|hAT-Charlie 28508 NM_017728 54868 Hs.370262 NM_017728 ENSG00000109066 TMEM104 - transmembrane protein 104 protein-coding 346.667-4 chr3 113420113 113420492 + 1.66667 NA intron (NM_001164496, intron 4 of 34) intron (NM_001164496, intron 4 of 34) 11898 NR_107043 102466253 NR_107043 ENSG00000275670 MIR8076 hsa-mir-8076 microRNA 8076 ncRNA 226-23 chr5 117427104 117427328 + 1.66667 NA intron (NR_046089, intron 1 of 5) L1M2|LINE|L1 11704 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 294-12 chr8 129139044 129139373 + 1.66667 NA Intergenic MIRb|SINE|MIR 102032 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 473.834 chr8 117958522 117959038 + 1.66667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -37867 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 180.667-11 chr11 30696692 30696859 + 1.66667 NA Intergenic Intergenic -110422 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 352.167-2 chr8 76417307 76417625 + 1.66667 NA intron (NR_105006, intron 1 of 5) intron (NR_105006, intron 1 of 5) 10812 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 369.334-2 chr7 145693416 145693738 + 1.66667 NA Intergenic L1MB1|LINE|L1 -857524 NM_001042482 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 223.333-22 chr20 55719443 55719816 + 1.66667 NA Intergenic Charlie4a|DNA|hAT-Charlie 285890 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 297.501-3 chr21 26205082 26205708 + 1.66667 NA Intergenic MLT2B3|LTR|ERVL -34267 NM_001136131 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 252.167-3 chr11 92657698 92658079 + 1.66667 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 257740 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 248.5-4 chr12 43124384 43124705 + 1.66667 NA Intergenic L2a|LINE|L2 -30771 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 380.334 chr19 33709386 33709758 + 1.66667 NA intron (NM_001127895, intron 3 of 4) L1MB7|LINE|L1 25044 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 259.834-2 chr2 182523400 182523843 + 1.66667 NA promoter-TSS (NM_001003683) promoter-TSS (NM_001003683) -776 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 271-7 chr3 66790942 66791180 + 1.66667 NA Intergenic Intergenic -52725 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 374.167 chr1 115376007 115376749 + 1.66667 NA Intergenic L3|LINE|CR1 -38142 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 310.334-4 chr20 47658115 47658428 + 1.66667 NA 3' UTR (NM_001161841, exon 21 of 21) 3' UTR (NM_001161841, exon 21 of 21) 127793 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 230.501-2 chr2 126609641 126609863 + 1.66667 NA Intergenic L1ME3D|LINE|L1 -46183 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 369.501 chr14 81725763 81726020 + 1.66667 NA Intergenic Intergenic 17247 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 338.667-8 chr9 36075460 36075778 + 1.66667 NA intron (NM_001316345, intron 8 of 22) intron (NM_001316345, intron 8 of 22) 38706 NM_001316346 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 305.333-8 chr3 66676460 66676703 + 1.66667 NA Intergenic L1MDa|LINE|L1 61755 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 319.501-2 chr7 81574740 81575015 + 1.66667 NA Intergenic Intergenic -13058 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 437.5-2 chr2 103712427 103712964 + 1.66667 NA Intergenic L1MA4A|LINE|L1 695637 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 196.667-52 chr8 15342994 15343297 + 1.66667 NA Intergenic Intergenic -104714 NM_001322881 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 204.333-54 chr8 88964474 88964718 + 1.66667 NA Intergenic Intergenic -637113 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 272.334-3 chr2 117721367 117721732 + 1.66667 NA Intergenic MLT1D|LTR|ERVL-MaLR -93142 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 214.334-3 chr2 148801385 148801667 + 1.66667 NA Intergenic L1MC5a|LINE|L1 -73701 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 390.667-3 chr9 34199904 34200493 + 1.66667 NA intron (NM_001171204, intron 2 of 7) L1MD3|LINE|L1 21155 NM_016525 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 403.333-3 chr6 48171050 48171512 + 1.66667 NA Intergenic L1MD1|LINE|L1 -102592 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 160.833-21 chr15 62192197 62192353 + 1.66667 NA Intergenic L1ME3E|LINE|L1 11043 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 297-5 chr4 84519287 84519525 + 1.66667 NA Intergenic Intergenic -21172 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 247.501-2 chr6 133481546 133481799 + 1.66667 NA intron (NM_172103, intron 11 of 18) intron (NM_172103, intron 11 of 18) 240173 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 367.334-3 chr9 131168081 131168422 + 1.66667 NA intron (NM_001318324, intron 21 of 35) L1ME3B|LINE|L1 -21888 NM_001318325 8021 Hs.654530 NM_005085 ENSG00000126883 NUP214 CAIN|CAN nucleoporin 214 protein-coding 255.667-17 chr21 16442357 16442604 + 1.66667 NA intron (NR_136550, intron 1 of 3) intron (NR_136550, intron 1 of 3) 22185 NR_136550 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 471.833 chr14 62755972 62756405 + 1.66667 NA intron (NM_172375, intron 9 of 9) L1MA2|LINE|L1 289270 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 131.334 chr1 212999424 212999512 + 1.66667 NA intron (NM_144567, intron 7 of 8) intron (NM_144567, intron 7 of 8) 16041 NM_001300755 90806 Hs.157078 NM_144567 ENSG00000174606 ANGEL2 Ccr4d|KIAA0759L angel homolog 2 protein-coding 351-3 chr3 23240517 23240795 + 1.66667 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 37329 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 279.334-4 chr16 77947006 77947454 + 1.66667 NA intron (NM_020927, intron 7 of 8) intron (NM_020927, intron 7 of 8) -75318 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 236.333-2 chr10 5090388 5090654 + 1.66667 NA intron (NM_001253908, intron 1 of 8) L1PA17|LINE|L1 -3893 NM_003739 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 361.834 chr11 90566647 90567007 + 1.66667 NA intron (NR_104190, intron 2 of 6) AluSx3|SINE|Alu -10970 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 301.667-10 chr4 14438885 14439128 + 1.66667 NA Intergenic L2c|LINE|L2 327038 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 214.167-4 chr1 238539664 238539856 + 1.66667 NA Intergenic L1MD|LINE|L1 -53743 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 348-9 chr7 55352287 55352555 + 1.66667 NA Intergenic L1MEb|LINE|L1 -13027 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 274.834-2 chr14 72638052 72638288 + 1.66667 NA intron (NM_001280542, intron 8 of 10) intron (NM_001280542, intron 8 of 10) 121350 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 267.5-8 chr2 123841916 123842179 + 1.66667 NA Intergenic L1PA16|LINE|L1 183127 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 310.5-4 chr12 5132972 5133276 + 1.66667 NA Intergenic LTR37A|LTR|ERV1 89245 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 221.667-42 chr8 137790043 137790260 + 1.66667 NA Intergenic Intergenic 293394 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 168.334-3 chr4 89602515 89602635 + 1.66667 NA Intergenic Intergenic -233826 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 349.667-6 chr4 31094277 31094589 + 1.66667 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -76711 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 354.667 chr10 28355340 28355755 + 1.66667 NA Intergenic Intergenic -52483 NM_001318170 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 255-8 chr14 77674901 77675176 + 1.66667 NA intron (NM_006020, intron 5 of 5) intron (NM_006020, intron 5 of 5) 32985 NM_006020 8846 Hs.94542 NM_006020 ENSG00000100601 ALKBH1 ABH|ABH1|ALKBH|alkB|hABH alkB homolog 1, histone H2A dioxygenase protein-coding 200.5-22 chr2 139792127 139792332 + 1.66667 NA Intergenic MER39|LTR|ERV1 794456 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 395.333-4 chr20 50536763 50537381 + 1.66667 NA intron (NM_001278618, intron 1 of 8) AluSq2|SINE|Alu 26689 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 237.5-33 chr8 118804957 118805125 + 1.66667 NA Intergenic LTR85c|LTR|Gypsy? 146844 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 391-2 chr16 5756581 5756944 + 1.66667 NA Intergenic Intergenic 124295 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 420.834-3 chr2 202965508 202965799 + 1.66667 NA intron (NR_136330, intron 8 of 14) L1M5|LINE|L1 -49226 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 250-27 chr8 110659796 110660057 + 1.66667 NA Intergenic L1PA17|LINE|L1 367507 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 315.834-3 chr15 63492315 63492619 + 1.66667 NA Intergenic Intergenic -12044 NM_001256702 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 176.833-11 chr14 62876958 62877211 + 1.66667 NA intron (NM_139318, intron 7 of 10) L1PA3|LINE|L1 168374 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 427.834 chr7 83224722 83225127 + 1.66667 NA Intergenic Intergenic -62040 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 279.167-2 chr1 199508668 199509048 + 1.66667 NA Intergenic Intergenic 360260 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 239-13 chr4 57448250 57448533 + 1.66667 NA intron (NR_125907, intron 4 of 5) L1MA8|LINE|L1 22519 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 261.667-28 chr5 135346193 135346359 + 1.66667 NA intron (NM_138610, intron 6 of 8) intron (NM_138610, intron 6 of 8) 52962 NM_138610 9555 Hs.420272 NM_004893 ENSG00000113648 H2AFY H2A.y|H2A/y|H2AF12M|MACROH2A1.1|mH2A1|macroH2A1.2 H2A histone family member Y protein-coding 175.5-64 chr8 116433882 116434015 + 1.66667 NA Intergenic Intergenic -108889 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 207-50 chr8 86940984 86941240 + 1.66667 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 74697 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 218.334 chr17 62827264 62827412 + 1.66667 NA intron (NR_135634, intron 1 of 1) intron (NR_135634, intron 1 of 1) 18836 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 138.667-64 chr4 26092615 26092732 + 1.66667 NA Intergenic MLT1G1|LTR|ERVL-MaLR 178481 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 146.333-59 chr22 34635902 34635994 + 1.66667 NA Intergenic AluSc5|SINE|Alu 361968 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 400 chr11 50669862 50670194 + 1.66667 NA Intergenic ALR/Alpha|Satellite|centr 260881 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 191.333-4 chr11 62801207 62801516 + 1.66667 NA exon (NM_001081491, exon 8 of 20) exon (NM_001081491, exon 8 of 20) 4079 NM_006362 10482 Hs.523739 NM_006362 ENSG00000162231 NXF1 MEX67|TAP nuclear RNA export factor 1 protein-coding 537.166 chr4 47848966 47849639 + 1.66667 NA intron (NR_103795, intron 23 of 23) intron (NR_103795, intron 23 of 23) -11196 NM_001278585 10699 Hs.518618 NM_006587 ENSG00000145244 CORIN ATC2|CRN|Lrp4|PEE5|TMPRSS10 corin, serine peptidase protein-coding 423.001 chr19 29162431 29162730 + 1.66667 NA Intergenic Intergenic 50571 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 435.167 chr16 19102814 19103486 + 1.66667 NA Intergenic AluSp|SINE|Alu -10782 NM_001034841 162073 Hs.530899 NM_001034841 ENSG00000205730 ITPRIPL2 - ITPRIP like 2 protein-coding 233.667-27 chr6 141381670 141381886 + 1.66667 NA Intergenic Intergenic 697964 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 202.666-2 chr10 62349587 62349727 + 1.66667 NA intron (NR_104162, intron 3 of 3) L1MEf|LINE|L1 -24500 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 265.334-12 chr20 13769796 13770003 + 1.66667 NA intron (NM_001276380, intron 7 of 13) intron (NM_001276380, intron 7 of 13) 14987 NM_016649 51575 Hs.369284 NM_016649 ENSG00000089048 ESF1 ABTAP|C20orf6|HDCMC28P|bA526K24.1 ESF1 nucleolar pre-rRNA processing protein homolog protein-coding 352.5-2 chr12 89595203 89595528 + 1.66667 NA intron (NM_001366521, intron 20 of 20) intron (NM_001366521, intron 20 of 20) -69103 NM_001199782 100528030 Hs.25130 NM_001199781 ENSG00000259075 POC1B-GALNT4 GALNT4|GalNAc-T4 POC1B-GALNT4 readthrough protein-coding 422.667 chr1 179577211 179577576 + 1.66667 NA Intergenic Intergenic -1441 NM_014625 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 245.834-9 chr7 31138162 31138340 + 1.66667 NA Intergenic L1MD|LINE|L1 85790 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 310-3 chr13 71188464 71188802 + 1.66667 NA Intergenic Intergenic 173492 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 241.334 chr11 55678998 55679188 + 1.66667 NA Intergenic Intergenic 13926 NM_001004704 219432 Hs.511921 NM_001004704 ENSG00000181903 OR4C6 OR11-138 olfactory receptor family 4 subfamily C member 6 protein-coding 425.168 chr3 101176225 101176791 + 1.66667 NA Intergenic Intergenic 144067 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 303.334 chr1 33003903 33004245 + 1.66667 NA Intergenic L1ME4c|LINE|L1 32809 NM_001625 204 Hs.470907 NM_001625 ENSG00000004455 AK2 ADK2 adenylate kinase 2 protein-coding 191.334-5 chr2 66250227 66250378 + 1.66667 NA Intergenic Intergenic 108026 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 411-2 chr8 63435233 63435822 + 1.66667 NA Intergenic Tigger6a|DNA|TcMar-Tigger -30322 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 196.5-10 chr12 10622458 10622935 + 1.66667 NA intron (NM_018423, intron 8 of 10) intron (NM_018423, intron 8 of 10) -9087 NR_135121 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 426.001 chr20 21738701 21739020 + 1.66667 NA Intergenic L1PB1|LINE|L1 33196 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 392.001-3 chr2 124436659 124436941 + 1.66667 NA intron (NM_130773, intron 5 of 23) intron (NM_130773, intron 5 of 23) 411513 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 334.166 chr8 119471638 119472185 + 1.66667 NA Intergenic L1M4b|LINE|L1 55465 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 272.667-6 chr2 101325976 101326217 + 1.66667 NA Intergenic L1MC1|LINE|L1 16646 NR_049881 100847007 NR_049881 ENSG00000264857 MIR5696 - microRNA 5696 ncRNA 435 chr1 63212061 63212481 + 1.66667 NA intron (NR_038252, intron 4 of 11) L1MC5a|LINE|L1 104986 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 165.334-6 chr6 153318757 153318890 + 1.66667 NA Intergenic L1ME1|LINE|L1 -187541 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 213.334-3 chr3 8331040 8331181 + 1.66667 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 170548 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 200.833-28 chr5 58444656 58444895 + 1.66667 NA Intergenic Intergenic 15311 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 210-25 chr3 75035750 75035888 + 1.66667 NA Intergenic Intergenic -178657 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 317.999-2 chr22 26745827 26746145 + 1.66667 NA intron (NR_110543, intron 2 of 5) L1MB3|LINE|L1 73143 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 140.667-42 chr2 60884203 60884316 + 1.66667 NA intron (NM_002908, intron 1 of 10) intron (NM_002908, intron 1 of 10) 2685 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 390-4 chr3 99564077 99564608 + 1.66667 NA Intergenic Intergenic -74252 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 333.667-5 chr8 104648923 104649259 + 1.66667 NA Intergenic Intergenic -60067 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 260.5-22 chr6 131891086 131891368 + 1.66667 NA 3' UTR (NM_006208, exon 25 of 25) 3' UTR (NM_006208, exon 25 of 25) 60145 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 424.834-2 chr5 57393271 57393635 + 1.66667 NA Intergenic L1MC1|LINE|L1 89358 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 226.667-34 chr8 142908128 142908389 + 1.66667 NA Intergenic HERVL74-int|LTR|ERVL 9585 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 608 chr14 71057862 71058401 + 1.66667 NA intron (NM_014982, intron 26 of 35) intron (NM_014982, intron 26 of 35) 150672 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 400-5 chr5 102380366 102380806 + 1.66667 NA intron (NM_173488, intron 12 of 13) intron (NM_173488, intron 12 of 13) -84302 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 292.667-5 chr18 62412882 62413105 + 1.66667 NA Intergenic Intergenic 87683 NM_001270951 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 165.667-54 chr5 12914598 12914842 + 1.66667 NA intron (NR_147005, intron 2 of 4) L2|LINE|L2 118166 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 380.167-2 chr1 151923500 151923930 + 1.66667 NA Intergenic HERV35I-int|LTR|ERV1 -14204 NM_053055 117145 Hs.164070 NM_053055 ENSG00000159445 THEM4 CTMP thioesterase superfamily member 4 protein-coding 349-2 chr10 31531966 31532648 + 1.66667 NA Intergenic Tigger5b|DNA|TcMar-Tigger -132552 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 208.334 chr12 42753806 42753957 + 1.66667 NA Intergenic L1MA4|LINE|L1 61665 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 296.667-16 chr8 25616015 25616270 + 1.66667 NA Intergenic L1M4c|LINE|L1 156909 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 310.334 chr1 83654447 83654707 + 1.66667 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 205969 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 214.667-41 chr8 141747603 141747819 + 1.66667 NA Intergenic L1ME1|LINE|L1 38602 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 185-47 chr7 50284822 50285015 + 1.66667 NA Intergenic Intergenic -19146 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 217.334 chr1 83982907 83983044 + 1.66667 NA intron (NM_001350214, intron 1 of 21) L1PA16|LINE|L1 16157 NM_001350214 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 289-14 chr6 86789037 86789244 + 1.66667 NA Intergenic Tigger13a|DNA|TcMar-Tigger -148388 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 260.667-19 chr5 163726029 163726296 + 1.66667 NA Intergenic Intergenic 220543 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 403.834-2 chr8 83240743 83241312 + 1.66667 NA Intergenic Intergenic -162731 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 247-14 chr3 69021439 69021622 + 1.66667 NA 3' UTR (NM_001363879, exon 17 of 17) 3' UTR (NM_001363879, exon 17 of 17) -7846 NM_173654 285203 Hs.518059 NM_173654 ENSG00000163378 EOGT AER61|AOS4|C3orf64|EOGT1 EGF domain specific O-linked N-acetylglucosamine transferase protein-coding 375 chr20 22721785 22722259 + 1.66667 NA Intergenic MER67A|LTR|ERV1 -36678 NR_146527 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 182.5-32 chr4 66330980 66331265 + 1.66667 NA Intergenic Intergenic 54298 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 347.5 chr2 68046439 68046744 + 1.66667 NA intron (NM_173177, intron 2 of 4) intron (NM_173177, intron 2 of 4) 16413 NM_001190265 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 405.001 chr3 34807864 34808339 + 1.66667 NA Intergenic AluSz6|SINE|Alu 585922 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 370 chr11 91656427 91656856 + 1.66667 NA Intergenic Intergenic -568393 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 243.667-33 chr7 18083723 18083961 + 1.66667 NA Intergenic Tigger2a|DNA|TcMar-Tigger -2983 NM_001321869 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 278.333-14 chr5 123540356 123540653 + 1.66667 NA intron (NM_001364141, intron 2 of 14) L1ME2|LINE|L1 -4913 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 291.667-4 chr10 32061595 32061793 + 1.66667 NA Intergenic MLT1H1|LTR|ERVL-MaLR -5269 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 314.334 chr11 124191945 124192183 + 1.66667 NA Intergenic Intergenic 6848 NM_001355213 26497 Hs.538726 NM_001355213 ENSG00000197309 OR10D3 HTPCRX09|OR10D3P olfactory receptor family 10 subfamily D member 3 (putative) protein-coding 195.334-4 chr11 41701419 41701585 + 1.66667 NA Intergenic MER77|LTR|ERVL -13066 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 434.167-3 chr6 128954537 128954869 + 1.66667 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 71562 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 260.334-3 chr15 65795211 65795392 + 1.66667 NA Intergenic Intergenic -3008 NM_001320835 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 181.834-2 chr18 12672601 12673034 + 1.66667 NA 3' UTR (NM_024899, exon 12 of 12) 3' UTR (NM_024899, exon 12 of 12) 14078 NM_147163 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 222.834 chr1 23093154 23093469 + 1.66667 NA exon (NM_033631, exon 4 of 5) exon (NM_033631, exon 4 of 5) 49006 NR_036057 100422866 NR_036057 ENSG00000263793 MIR3115 mir-3115 microRNA 3115 ncRNA 304.834 chr12 130316304 130316495 + 1.66667 NA Intergenic Intergenic -21488 NM_001190971 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 289.167-5 chr10 52570835 52571074 + 1.66667 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -100421 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 197-48 chr8 15035916 15036054 + 1.66667 NA intron (NM_139167, intron 1 of 7) L1MA8|LINE|L1 -182475 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 547.333 chr4 30989707 30990827 + 1.66667 NA intron (NM_001173523, intron 2 of 2) (AT)n|Simple_repeat|Simple_repeat -180877 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 339.834-3 chrX 46452736 46453005 + 1.66667 NA intron (NM_017776, intron 3 of 5) L1ME4b|LINE|L1 5573 NM_001129898 55634 Hs.632800 NM_017776 ENSG00000147121 KRBOX4 ZNF673 KRAB box domain containing 4 protein-coding 239.167-5 chr11 73526457 73526641 + 1.66667 NA intron (NM_001286051, intron 1 of 5) MIRc|SINE|MIR 71563 NM_001286051 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 223-32 chr7 51724803 51725002 + 1.66667 NA Intergenic Intergenic -331646 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 241.333-21 chr5 4560020 4560301 + 1.66667 NA Intergenic Intergenic -213321 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 224.667-6 chr11 14943599 14943772 + 1.66667 NA Intergenic Intergenic 28601 NM_001033953 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 371.167 chr1 66306132 66306417 + 1.66667 NA intron (NM_001037340, intron 5 of 14) intron (NM_001037340, intron 5 of 14) -25834 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 251-13 chr21 22864455 22864793 + 1.66667 NA Intergenic Intergenic -214660 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 334.5-13 chr8 104066950 104067324 + 1.66667 NA intron (NM_001348499, intron 19 of 23) intron (NM_001348499, intron 19 of 23) -156198 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 466.667 chr14 50610837 50611228 + 1.66667 NA intron (NM_015915, intron 6 of 13) MLT1K|LTR|ERVL-MaLR 51007 NM_181598 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 259-10 chr2 46119668 46119934 + 1.66667 NA intron (NM_005400, intron 11 of 14) intron (NM_005400, intron 11 of 14) -177606 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 238.334-2 chr20 7284161 7284339 + 1.66667 NA Intergenic L1MD3|LINE|L1 23182 NR_135005 101929288 Hs.738005 NR_135005 ENSG00000261249 LINC01751 - long intergenic non-protein coding RNA 1751 ncRNA 279.334-2 chr13 114063107 114063414 + 1.66667 NA intron (NM_001320821, intron 2 of 25).2 intron (NM_001320821, intron 2 of 25).2 14695 NM_001320822 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 288.5-4 chr18 6355395 6355887 + 1.66667 NA intron (NM_001365765, intron 1 of 18) intron (NM_001365765, intron 1 of 18) 3389 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 260.667-22 chr8 78605738 78605935 + 1.66667 NA TTS (NM_006823) TTS (NM_006823) -47333 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 245.167-16 chr8 89616697 89617128 + 1.66667 NA Intergenic L3b|LINE|CR1 140799 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 269.001-2 chr2 161006331 161006666 + 1.66667 NA Intergenic Intergenic -130457 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 248.167-13 chr17 74336328 74336558 + 1.66667 NA intron (NM_153209, intron 2 of 19) MLT1C|LTR|ERVL-MaLR 10217 NM_153209 124602 Hs.372773 NM_153209 ENSG00000196169 KIF19 KIF19A kinesin family member 19 protein-coding 280.834-5 chr5 54660567 54660762 + 1.66667 NA intron (NR_104658, intron 2 of 2) MER30|DNA|hAT-Charlie 42660 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 547.667 chr2 22753112 22753759 + 1.66667 NA Intergenic Intergenic 216956 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 179.334 chr1 235582402 235582581 + 1.66667 NA intron (NM_004485, intron 2 of 2) intron (NM_004485, intron 2 of 2) 67293 NM_001098722 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 307.5-13 chr8 120739583 120739904 + 1.66667 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -21510 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 194.167-34 chr6 134057403 134057650 + 1.66667 NA Intergenic Intergenic -4902 NM_145176 154091 Hs.486508 NM_145176 ENSG00000146411 SLC2A12 GLUT12|GLUT8 solute carrier family 2 member 12 protein-coding 226.833 chr1 189748261 189748533 + 1.66667 NA Intergenic Intergenic 727613 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 283.333-10 chr6 154755946 154756218 + 1.66667 NA intron (NM_001286189, intron 3 of 21) intron (NM_001286189, intron 3 of 21) 22704 NM_001286199 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 366.667 chr1 89188352 89188750 + 1.66667 NA intron (NM_052941, intron 8 of 10) intron (NM_052941, intron 8 of 10) 10391 NM_052941 115361 Hs.409925 NM_052941 ENSG00000162654 GBP4 Mpa2 guanylate binding protein 4 protein-coding 385.501 chr6 155995091 155995452 + 1.66667 NA Intergenic Intergenic 48474 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 171.334-2 chr10 58136828 58136976 + 1.66667 NA Intergenic Intergenic 130992 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 223-31 chr7 10571489 10571656 + 1.66667 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -131104 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 253-26 chr8 136581061 136581333 + 1.66667 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 50399 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 488 chr8 66617524 66618017 + 1.66667 NA Intergenic Intergenic -4552 NM_001144755 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 158.834-2 chr2 150990391 150990570 + 1.66667 NA Intergenic L1MA5|LINE|L1 271383 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 353.167-4 chr21 24057899 24058369 + 1.66667 NA Intergenic L2|LINE|L2 263243 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 311-2 chr10 86464051 86464349 + 1.66667 NA intron (NM_001318328, intron 9 of 18) intron (NM_001318328, intron 9 of 18) 57584 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 332.333-2 chr15 60644364 60644664 + 1.66667 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) -16984 NM_002943 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 279.167-6 chr17 82760195 82760381 + 1.66667 NA intron (NM_005993, intron 2 of 38) L1M5|LINE|L1 8223 NM_005993 6904 Hs.464391 NM_005993 ENSG00000141556 TBCD PEBAT|SSD-1|tfcD tubulin folding cofactor D protein-coding 192.333-56 chr8 137080763 137080982 + 1.66667 NA Intergenic L2b|LINE|L2 332716 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 302.666 chr14 40519759 40520090 + 1.66667 NA Intergenic MLT2A2|LTR|ERVL -434787 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 339.167-3 chr2 17016648 17016918 + 1.66667 NA Intergenic L1M4|LINE|L1 -350949 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 370.666 chr17 60609681 60609947 + 1.66667 NA intron (NM_003620, intron 1 of 5) MER44B|DNA|TcMar-Tigger 9631 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 191.667-6 chr10 10987325 10987646 + 1.66667 NA intron (NM_001326319, intron 4 of 16) intron (NM_001326319, intron 4 of 16) -17163 NM_001326330 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 190-30 chr2 124697762 124697977 + 1.66667 NA intron (NM_130773, intron 13 of 23) MIR|SINE|MIR 672582 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 319.334-4 chr6 149087388 149087772 + 1.66667 NA Intergenic L1ME4a|LINE|L1 -54919 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 328-3 chr11 106383705 106384057 + 1.66667 NA Intergenic Intergenic 132474 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 316-6 chr4 70124197 70124798 + 1.66667 NA Intergenic L1MA8|LINE|L1 -9107 NR_033311 100337616 Hs.729824 NR_033311 CSN1S2BP CSN1S2B casein alpha s2 like B, pseudogene pseudo 152.667-67 chr5 44374311 44374440 + 1.66667 NA intron (NM_004465, intron 1 of 2) MLT1D|LTR|ERVL-MaLR -14357 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 345.834 chr4 39862135 39862380 + 1.66667 NA exon (NM_001100399, exon 26 of 33) exon (NM_001100399, exon 26 of 33) 115654 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 186.167-17 chr13 98903778 98903958 + 1.66667 NA intron (NM_001366682, intron 10 of 53) L1MB3|LINE|L1 71784 NR_046663 100874096 Hs.578066 NR_046663 ENSG00000229918 DOCK9-AS1 - DOCK9 antisense RNA 1 ncRNA 382.834 chr1 165026028 165026537 + 1.66667 NA Intergenic MER89|LTR|ERV1 -251641 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 236.834-12 chr5 92426273 92426502 + 1.66667 NA Intergenic Intergenic -1043070 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 216-13 chr17 59622830 59623058 + 1.66667 NA intron (NM_001288653, intron 1 of 31) intron (NM_001288653, intron 1 of 31) 3049 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 296.167-13 chr9 86441824 86442104 + 1.66667 NA Intergenic L1MEi|LINE|L1 -87554 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 192.667-57 chr9 90472714 90472837 + 1.66667 NA intron (NR_034157, intron 5 of 5) L1MDb|LINE|L1 -39286 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 229-18 chr18 33135085 33135245 + 1.66667 NA intron (NM_001308126, intron 20 of 23) intron (NM_001308126, intron 20 of 23) 305406 NM_001371121 142-22 chr11 26744712 26744897 + 1.66667 NA Intergenic MIRb|SINE|MIR -22744 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 245-12 chr20 14075992 14076187 + 1.66667 NA intron (NM_001351663, intron 2 of 17) MER31-int|LTR|ERV1 80573 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 323.333-14 chr7 46576029 46576601 + 1.66667 NA Intergenic MER45A|DNA|hAT-Tip100 120807 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 253.834-2 chr14 34237189 34237575 + 1.66667 NA Intergenic L1ME1|LINE|L1 224858 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 167-7 chr10 59152966 59153149 + 1.66667 NA Intergenic MIR|SINE|MIR 23407 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 327.001 chr2 211100083 211100383 + 1.66667 NA Intergenic L1M5|LINE|L1 482662 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 244.333-17 chr3 29740484 29740649 + 1.66667 NA intron (NM_001003792, intron 5 of 13) intron (NM_001003792, intron 5 of 13) 193590 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 193-7 chr10 123442062 123442289 + 1.66667 NA Intergenic Intergenic -224180 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 375.834-2 chr5 154259760 154260151 + 1.66667 NA intron (NM_198321, intron 1 of 11) intron (NM_198321, intron 1 of 11) 69222 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 411.001 chr3 138247735 138248040 + 1.66667 NA TTS (NM_014154) TTS (NM_014154) 60356 NM_001282342 25852 Hs.744868 NM_014154 ENSG00000114098 ARMC8 GID5|HSPC056|S863-2|VID28 armadillo repeat containing 8 protein-coding 308.334-4 chr6 55712358 55712606 + 1.66667 NA Intergenic Intergenic -133268 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 272.667-16 chr5 1906064 1906477 + 1.66667 NA Intergenic L1MEf|LINE|L1 18939 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 400.334 chr11 68157270 68157565 + 1.66667 NA 3' UTR (NM_017635, exon 11 of 11) 3' UTR (NM_017635, exon 11 of 11) -36026 NM_212469 1119 Hs.77221 NM_001277 ENSG00000110721 CHKA CHK|CK|CKI|EK choline kinase alpha protein-coding 470.667-2 chr8 82579988 82580527 + 1.66667 NA Intergenic L1MA4A|LINE|L1 -331847 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 345.333-4 chr4 174044567 174044870 + 1.66667 NA Intergenic Intergenic 147445 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 216-11 chr16 53620915 53621075 + 1.66667 NA intron (NM_001127897, intron 21 of 24) intron (NM_001127897, intron 21 of 24) 82864 NM_001328423 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 292-11 chr4 83007052 83007251 + 1.66667 NA intron (NM_001115007, intron 1 of 12) AluSx1|SINE|Alu 3672 NR_110253 132660 Hs.96952 NM_194282 ENSG00000189308 LIN54 CXCDC1|JC8.6|MIP120|TCX1 lin-54 DREAM MuvB core complex component protein-coding 196-64 chr8 108024063 108024260 + 1.66667 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 57778 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 386.334 chr21 15184063 15184433 + 1.66667 NA Intergenic MamRTE1|LINE|RTE-BovB -119248 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 421 chr1 163265194 163265484 + 1.66667 NA intron (NM_001254748, intron 2 of 5) L2c|LINE|L2 56452 NM_001254748 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 250-18 chr5 6927734 6927903 + 1.66667 NA Intergenic L1ME1|LINE|L1 -99897 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 260.334-6 chr8 47392536 47392774 + 1.66667 NA intron (NR_104581, intron 5 of 16) intron (NR_104581, intron 5 of 16) 131717 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 191.334-4 chr17 75407824 75408007 + 1.66667 NA Intergenic MIRb|SINE|MIR 1846 NR_037449 100500841 NR_037449 ENSG00000264511 MIR3678 mir-3678 microRNA 3678 ncRNA 172-23 chr14 103963387 103963575 + 1.66667 NA intron (NM_153046, intron 3 of 35) intron (NM_153046, intron 3 of 35) -20952 NM_001257268 647286 Hs.632325 NM_001257268 ENSG00000227729 RD3L TDRD9-AS1|TDRD9AS1 retinal degeneration 3 like protein-coding 260.667-6 chr18 4152745 4153149 + 1.66667 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -111655 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 410.167-4 chr8 115412437 115412827 + 1.66667 NA 3' UTR (NM_001282903, exon 7 of 7) 3' UTR (NM_001282903, exon 7 of 7) 255381 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 415.834 chr4 125933250 125933540 + 1.66667 NA Intergenic L1MA1|LINE|L1 426136 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 350.668 chr1 96958151 96958468 + 1.66667 NA Intergenic Intergenic -137614 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 419.334 chr12 37906781 37907093 + 1.66667 NA Intergenic ALR/Alpha|Satellite|centr -409837 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 476.501 chr1 64192591 64193057 + 1.66667 NA Intergenic MER117|DNA|hAT-Charlie -10799 NM_001366232 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 352.501 chr5 116566916 116567153 + 1.66667 NA intron (NM_001300780, intron 1 of 19) intron (NM_001300780, intron 1 of 19) -7384 NR_147170 105379132 NR_147170 SEMA6A-AS2 - SEMA6A antisense RNA 2 ncRNA 321.667-9 chr7 108194573 108194782 + 1.66667 NA intron (NM_001371137, intron 12 of 25) intron (NM_001371137, intron 12 of 25) 48708 NM_001371181 221.667-23 chr4 76348732 76348986 + 1.66667 NA intron (NM_001042784, intron 17 of 23) L1MEg|LINE|L1 42833 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 379-2 chr17 1527807 1528252 + 1.66667 NA intron (NM_006224, intron 10 of 11) AluJr|SINE|Alu 11110 NR_028514 100306951 Hs.633815 NR_028514 ENSG00000236618 PITPNA-AS1 - PITPNA antisense RNA 1 ncRNA 455.168 chr21 30767813 30768129 + 1.66667 NA Intergenic AluSc8|SINE|Alu -12543 NM_181619 337977 Hs.567837 NM_181619 ENSG00000187005 KRTAP21-1 KAP21.1 keratin associated protein 21-1 protein-coding 246.667-8 chr14 43348752 43348988 + 1.66667 NA Intergenic Intergenic 1158413 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 257.334-3 chr14 51206866 51207136 + 1.66667 NA Intergenic Intergenic -33246 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 234-33 chr6 56707835 56708416 + 1.66667 NA intron (NM_001144770, intron 3 of 94) intron (NM_001144770, intron 3 of 94) -65236 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 214-37 chr5 103882956 103883135 + 1.66667 NA Intergenic Intergenic -320256 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 282-22 chr6 110211342 110211644 + 1.66667 NA intron (NM_015891, intron 6 of 14) intron (NM_015891, intron 6 of 14) 31066 NM_015891 51362 Hs.428147 NM_015891 ENSG00000168438 CDC40 EHB3|PRP17|PRPF17 cell division cycle 40 protein-coding 409.167 chr1 213565307 213565674 + 1.66667 NA Intergenic L1ME2z|LINE|L1 -359259 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 292.5-5 chr12 71276939 71277249 + 1.66667 NA Intergenic Intergenic -119095 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 275.834-3 chr2 210576739 210576940 + 1.66667 NA intron (NR_161225, intron 4 of 38) intron (NR_161225, intron 4 of 38) -16516 NR_163592 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 241.834-2 chr11 14670684 14670868 + 1.66667 NA intron (NM_000922, intron 1 of 15) intron (NM_000922, intron 1 of 15) 26972 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 410.167 chr1 42458929 42459678 + 1.66667 NA intron (NM_001287507, intron 2 of 2) AluJb|SINE|Alu 2760 NM_024664 79717 Hs.706662 NM_024664 ENSG00000127125 PPCS CMD2C phosphopantothenoylcysteine synthetase protein-coding 250-29 chr9 130413358 130413581 + 1.66667 NA intron (NM_001291815, intron 85 of 97) L1MDa|LINE|L1 -31238 NM_000050 445 Hs.160786 NM_000050 ENSG00000130707 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 375-5 chr7 18245156 18245525 + 1.66667 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -44752 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 271-16 chr8 36567816 36568140 + 1.66667 NA Intergenic Intergenic -216396 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 347.833-2 chr11 37066797 37067146 + 1.66667 NA Intergenic ERVL-B4-int|LTR|ERVL -468692 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 149.5-60 chr7 79402507 79402739 + 1.66667 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -50334 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 604.999 chr21 33644414 33645004 + 1.66667 NA intron (NM_001001132, intron 1 of 29) intron (NM_001001132, intron 1 of 29) 2208 NM_001331011 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 399.667-3 chr5 18600254 18600697 + 1.66667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 793201 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 380.834-3 chr2 42448830 42449176 + 1.66667 NA intron (NM_172344, intron 1 of 1) MER8|DNA|TcMar-Tigger 44979 NM_172344 170850 Hs.352633 NM_133329 ENSG00000171126 KCNG3 KV10.1|KV6.3 potassium voltage-gated channel modifier subfamily G member 3 protein-coding 259.5-9 chr2 200678350 200678609 + 1.66667 NA Intergenic Intergenic -17244 NR_135011 107161151 Hs.148269 NR_135011 AOX3P-AOX2P AOX3/AOX3L1 AOX3P-AOX2P readthrough, transcribed pseudogene pseudo 360.833-4 chr2 129664147 129664517 + 1.66667 NA Intergenic L1ME2|LINE|L1 213159 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 355.5-5 chr21 28151282 28151808 + 1.66667 NA intron (NR_126012, intron 5 of 5) Tigger3b|DNA|TcMar-Tigger 61142 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 419.001 chr12 60286998 60287423 + 1.66667 NA Intergenic Intergenic 597840 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 302.501 chr1 110358899 110359081 + 1.66667 NA Intergenic Intergenic 19667 NM_001201545 64783 Hs.435947 NM_022768 ENSG00000162775 RBM15 OTT|OTT1|SPEN RNA binding motif protein 15 protein-coding 333.5-3 chr20 55048063 55048545 + 1.66667 NA Intergenic Intergenic -374739 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 206.667-19 chr15 43064368 43064571 + 1.66667 NA intron (NM_174916, intron 6 of 46) L3|LINE|CR1 41569 NM_174916 197131 Hs.591121 NM_174916 ENSG00000159459 UBR1 JBS ubiquitin protein ligase E3 component n-recognin 1 protein-coding 405.5 chr1 81295203 81295747 + 1.66667 NA Intergenic L2c|LINE|L2 -10717 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 242.834-2 chr12 40206737 40206885 + 1.66667 NA Intergenic Intergenic -18186 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 357.001 chr13 27658226 27658542 + 1.66667 NA intron (NM_152705, intron 2 of 2) intron (NM_152705, intron 2 of 2) 36492 NM_015972 51082 Hs.507584 NM_015972 ENSG00000186184 POLR1D AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2 RNA polymerase I and III subunit D protein-coding 292.5-11 chr2 205012224 205012496 + 1.66667 NA intron (NM_205863, intron 3 of 21) intron (NM_205863, intron 3 of 21) 466885 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 317.834-3 chr22 17703703 17704044 + 1.66667 NA TTS (NM_001363824) TTS (NM_001363824) -2785 NM_001270733 23786 Hs.631672 NM_015367 ENSG00000099968 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2 like 13 protein-coding 658.834 chr8 121206737 121207629 + 1.66667 NA Intergenic Intergenic -395137 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 275.334 chr1 207080980 207081257 + 1.66667 NA TTS (NM_001018053) TTS (NM_001018053) -7742 NM_001017365 725 Hs.99886 NM_000716 ENSG00000123843 C4BPB C4BP complement component 4 binding protein beta protein-coding 257.834-4 chr8 113854938 113855131 + 1.66667 NA Intergenic L2|LINE|L2 -418095 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 235.834-3 chr17 47326642 47326873 + 1.66667 NA intron (NM_001195192, intron 3 of 21) Tigger19b|DNA|TcMar-Tigger 2802 NM_001195192 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 244.333-7 chr13 101176377 101176793 + 1.66667 NA intron (NM_001350749, intron 14 of 43) intron (NM_001350749, intron 14 of 43) -232221 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 301.334 chr1 64876948 64877173 + 1.66667 NA intron (NM_002227, intron 4 of 24) intron (NM_002227, intron 4 of 24) 89489 NM_002227 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 293-10 chrX 147369572 147369899 + 1.66667 NA Intergenic Intergenic -85007 NR_030239 574517 NR_030239 ENSG00000207866 MIR514A2 MIR514-2|MIRN514-2|hsa-mir-514a-2 microRNA 514a-2 ncRNA 214.167-18 chr3 94759725 94759905 + 1.66667 NA Intergenic Intergenic -178448 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 448 chr3 100844040 100844403 + 1.66667 NA intron (NM_001349330, intron 18 of 61) intron (NM_001349330, intron 18 of 61) 134679 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 399.667 chr1 114931888 114932351 + 1.66667 NA intron (NM_001282542, intron 23 of 30) L1M4a2|LINE|L1 77256 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 231.167-16 chr3 126616654 126616993 + 1.66667 NA intron (NM_052883, intron 12 of 15) intron (NM_052883, intron 12 of 15) 38301 NM_001173513 114112 Hs.477475 NM_052883 ENSG00000197763 TXNRD3 TGR|TR2|TR2IT1|TRXR3|TXNRD3IT1|TXNRD3NB|TXNRD3NT1 thioredoxin reductase 3 protein-coding 370.5-2 chr14 57851451 57851987 + 1.66667 NA intron (NM_001352012, intron 1 of 8) L1MD3|LINE|L1 13280 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 216.667-24 chr2 238473183 238473394 + 1.66667 NA Intergenic Intergenic 46361 NM_001330196 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 319.501 chr5 110982264 110982556 + 1.66667 NA Intergenic L1M1|LINE|L1 -87670 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 270.334-12 chr8 57375325 57375579 + 1.66667 NA Intergenic L1ME3F|LINE|L1 31665 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 166.333-21 chr14 60670438 60670631 + 1.66667 NA Intergenic L1MEc|LINE|L1 -21057 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 368.667-2 chr14 61825015 61825307 + 1.66667 NA intron (NM_001367656, intron 1 of 7) HAL1|LINE|L1 12458 NM_001367656 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 408.667-2 chr2 166362975 166363496 + 1.66667 NA intron (NM_001365536, intron 1 of 26) intron (NM_001365536, intron 1 of 26) 12709 NM_001365536 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 301.5-13 chr8 135437385 135437723 + 1.66667 NA Intergenic (GAAT)n|Simple_repeat|Simple_repeat -19902 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 220.167-19 chr22 25676570 25676850 + 1.66667 NA intron (NM_001362778, intron 7 of 19) intron (NM_001362778, intron 7 of 19) -65478 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 340.167-5 chr21 22549563 22550046 + 1.66667 NA Intergenic Intergenic 451187 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 434-2 chr2 21699529 21700191 + 1.66667 NA intron (NR_038837, intron 2 of 2) L1ME4a|LINE|L1 10792 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 353.334-2 chr2 49842232 49842589 + 1.66667 NA Intergenic MamRep434|DNA|TcMar-Tigger 131793 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 351.667-5 chr14 70681468 70681784 + 1.66667 NA Intergenic MER33|DNA|hAT-Charlie -17072 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 431.001 chr3 40050372 40050650 + 1.66667 NA intron (NM_001284425, intron 3 of 15) Tigger1|DNA|TcMar-Tigger -49500 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 354.5-8 chrX 67667197 67667728 + 1.66667 NA intron (NM_001011645, intron 3 of 8) L1MA3|LINE|L1 122839 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 266.334-3 chr5 108039306 108039595 + 1.66667 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 342648 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 269.667-12 chr2 44619312 44619580 + 1.66667 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 257499 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 215.834-7 chr6 76185806 76186042 + 1.66667 NA Intergenic Intergenic -113246 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 212.667-27 chr20 33612104 33612239 + 1.66667 NA intron (NM_001039709, intron 3 of 10) intron (NM_001039709, intron 3 of 10) 49806 NM_005093 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 382.5-2 chr3 134734157 134734457 + 1.66667 NA Intergenic L1MD2|LINE|L1 -60953 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 198.167-24 chr3 116891119 116891523 + 1.66667 NA Intergenic Intergenic -30110 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 195.333-43 chr5 55347232 55347439 + 1.66667 NA intron (NM_015360, intron 11 of 26) intron (NM_015360, intron 11 of 26) 39346 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 338.333-5 chr4 10045530 10045961 + 1.66667 NA Intergenic Intergenic -5497 NM_001001290 56606 Hs.444612 NM_020041 ENSG00000109667 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 member 9 protein-coding 549.5 chr10 19215439 19216072 + 1.66667 NA intron (NM_001142308, intron 18 of 39) intron (NM_001142308, intron 18 of 39) 166954 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 309.001 chr4 173989004 173989240 + 1.66667 NA Intergenic Intergenic 91849 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 217-16 chr2 162613055 162613240 + 1.66667 NA intron (NM_033272, intron 2 of 15) L1MEd|LINE|L1 -155789 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 298.667-5 chr16 64011351 64011657 + 1.66667 NA Intergenic L1MEf|LINE|L1 1110559 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 177.667-14 chr12 15524880 15525012 + 1.66667 NA exon (NM_002848, exon 11 of 26) exon (NM_002848, exon 11 of 26) -21665 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 375.334-2 chr2 58792945 58793382 + 1.66667 NA intron (NR_033873, intron 2 of 13) MIRb|SINE|MIR 272410 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 286-4 chr11 25034517 25034730 + 1.66667 NA intron (NM_001009909, intron 9 of 11) L1PA16|LINE|L1 537570 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 449.333 chr9 96488584 96489142 + 1.66667 NA intron (NM_014282, intron 7 of 7) intron (NM_014282, intron 7 of 7) 38694 NM_014282 22927 Hs.494567 NM_014282 ENSG00000130956 HABP4 IHABP-4|IHABP4|Ki-1/57|SERBP1L hyaluronan binding protein 4 protein-coding 222.5-32 chr8 122613307 122613558 + 1.66667 NA Intergenic Intergenic -44788 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 315-7 chr4 31382840 31383266 + 1.66667 NA Intergenic Intergenic -123491 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 360-2 chr13 35553209 35553871 + 1.66667 NA intron (NM_001204197, intron 3 of 17) intron (NM_001204197, intron 3 of 17) 76791 NM_001204197 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 327.001-2 chr5 157250778 157251011 + 1.66667 NA intron (NM_005546, intron 16 of 16) L1MC3|LINE|L1 -15229 NM_001291722 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 146.333-62 chr3 48506928 48507095 + 1.66667 NA Intergenic LTR33|LTR|ERVL -2185 NM_001272066 51246 Hs.414579 NM_016479 ENSG00000164054 SHISA5 SCOTIN shisa family member 5 protein-coding 289.167-10 chr18 9878808 9879153 + 1.66667 NA Intergenic MER58A|DNA|hAT-Charlie -6993 NM_032243 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 439.167 chr12 17137678 17138096 + 1.66667 NA Intergenic Intergenic 149140 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 615.501 chr10 81821489 81822291 + 1.66667 NA Intergenic Intergenic -53304 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 302.167-9 chr4 76137977 76138655 + 1.66667 NA intron (NM_001278603, intron 2 of 10) intron (NM_001278603, intron 2 of 10) 10081 NM_017426 53371 Hs.430435 NM_017426 ENSG00000138750 NUP54 - nucleoporin 54 protein-coding 244.834-2 chr5 2955738 2955982 + 1.66667 NA Intergenic L1MA5|LINE|L1 38006 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 530.001 chr21 19302691 19303139 + 1.66667 NA Intergenic Intergenic -543103 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 309-8 chr3 115517619 115517943 + 1.66667 NA Intergenic Intergenic -105729 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 318.001 chr3 83165200 83165420 + 1.66667 NA Intergenic L1M4|LINE|L1 1179168 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 176-30 chr4 72491307 72491498 + 1.66667 NA intron (NM_014243, intron 3 of 21) L1MA9|LINE|L1 77819 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 165.667-56 chr5 58638177 58638308 + 1.66667 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 55167 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 475.668 chr1 222585887 222586187 + 1.66667 NA intron (NM_001201536, intron 2 of 11) Charlie2b|DNA|hAT-Charlie -3883 NR_110613 100506161 Hs.553851 NR_110613 ENSG00000225265 TAF1A-AS1 - TAF1A antisense RNA 1 ncRNA 598 chr14 71162101 71162629 + 1.66667 NA Intergenic L1MA4|LINE|L1 -158111 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 222.167-2 chr1 216616803 216617048 + 1.66667 NA intron (NM_001243505, intron 3 of 6) intron (NM_001243505, intron 3 of 6) 106504 NM_001243518 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 223.334-9 chr7 21104126 21104311 + 1.66667 NA Intergenic LTR8B|LTR|ERV1 268787 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 239.667-12 chr15 47930819 47931197 + 1.66667 NA Intergenic L1MA4|LINE|L1 -84772 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 134-62 chr2 139188460 139188583 + 1.66667 NA Intergenic L1MA8|LINE|L1 291197 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 221.001 chr14 20123417 20123584 + 1.66667 NA Intergenic L1MA5A|LINE|L1 6032 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 409.334 chr3 3875574 3875974 + 1.66667 NA Intergenic Intergenic -74899 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 521.501 chr10 113376753 113377355 + 1.66667 NA Intergenic Intergenic -173777 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 415.833 chr12 121472349 121472775 + 1.66667 NA intron (NM_001005366, intron 12 of 22) intron (NM_001005366, intron 12 of 22) -28210 NR_106957 102465665 NR_106957 ENSG00000284402 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 280.501 chr7 104905667 104906143 + 1.66667 NA intron (NR_027374, intron 3 of 3) intron (NR_027374, intron 3 of 3) 20740 NR_027374 723809 Hs.124316 NR_027374 ENSG00000225329 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 202-27 chr3 111495062 111495209 + 1.66667 NA Intergenic Intergenic -47062 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 482.834 chr4 64148891 64149278 + 1.66667 NA Intergenic MIRc|SINE|MIR 260366 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 269.334-4 chr16 76629644 76629921 + 1.66667 NA Intergenic L1MA9|LINE|L1 -5216 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 120.833-11 chr14 65465243 65465336 + 1.66667 NA intron (NM_004480, intron 2 of 9) L1MCa|LINE|L1 -5813 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 284-4 chr14 68137636 68137950 + 1.66667 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 314201 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 408.667-3 chr9 68754979 68755479 + 1.66667 NA intron (NM_003558, intron 2 of 15) intron (NM_003558, intron 2 of 15) -24836 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 597.334 chr2 82544585 82545165 + 1.66667 NA Intergenic Intergenic -311928 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 318.667-4 chr4 46817859 46818122 + 1.66667 NA intron (NM_130902, intron 2 of 2) intron (NM_130902, intron 2 of 2) 91255 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 459 chr5 164301131 164301627 + 1.66667 NA Intergenic Intergenic 166023 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 181.834-4 chr21 19822931 19823045 + 1.66667 NA Intergenic Intergenic 76767 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 356.333-2 chr14 87286602 87286883 + 1.66667 NA Intergenic Intergenic 368552 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 393-4 chr2 146504215 146504588 + 1.66667 NA Intergenic Intergenic -82656 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 128.667 chr1 36075663 36075894 + 1.66667 NA Intergenic AluJb|SINE|Alu -8316 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 416.667 chr4 62198971 62199441 + 1.66667 NA Intergenic Intergenic -37441 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 195-3 chr1 51140032 51140235 + 1.66667 NA intron (NM_001136508, intron 3 of 4) L1MEd|LINE|L1 37905 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 321.666 chr1 76922381 76922629 + 1.66667 NA intron (NM_001320274, intron 2 of 2) L1MD|LINE|L1 55025 NM_001320273 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 350-9 chr8 99738237 99738661 + 1.66667 NA intron (NM_017890, intron 39 of 61) intron (NM_017890, intron 39 of 61) 155258 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 170-3 chr1 214560370 214560508 + 1.66667 NA Intergenic Intergenic -8837 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 151.834-2 chr3 89257701 89257852 + 1.66667 NA intron (NM_182644, intron 3 of 6) L1MC4|LINE|L1 150155 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 275-7 chr20 23295201 23295496 + 1.66667 NA Intergenic Intergenic -55443 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 231.834-4 chr18 5301082 5301260 + 1.66667 NA Intergenic Intergenic -4118 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 311.334-3 chr17 54455313 54455512 + 1.66667 NA Intergenic MER57-int|LTR|ERV1 -445279 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 329.334 chr4 48661019 48661236 + 1.66667 NA intron (NM_015030, intron 3 of 63) L1MC3|LINE|L1 119172 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 329.167-2 chr14 44989112 44989375 + 1.66667 NA intron (NR_131765, intron 1 of 19) intron (NR_131765, intron 1 of 19) 27053 NR_131765 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 216.834-2 chr1 114745113 114745386 + 1.66667 NA intron (NM_001130523, intron 2 of 19) L1M5|LINE|L1 12735 NM_001242893 7812 Hs.69855 NM_007158 ENSG00000009307 CSDE1 D1S155E|UNR cold shock domain containing E1 protein-coding 288.833-7 chr3 4398124 4398567 + 1.66667 NA intron (NM_001164674, intron 6 of 7) intron (NM_001164674, intron 6 of 7) 68924 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 337 chr11 47431909 47432193 + 1.66667 NA Intergenic AluSz|SINE|Alu -5578 NM_002804 5702 Hs.250758 NM_002804 ENSG00000165916 PSMC3 TBP1 proteasome 26S subunit, ATPase 3 protein-coding 210.667-45 chr5 62147304 62147533 + 1.66667 NA Intergenic Intergenic -158744 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 229.167-35 chr7 117317587 117317835 + 1.66667 NA intron (NM_003391, intron 2 of 4) intron (NM_003391, intron 2 of 4) 5347 NM_003391 7472 Hs.567356 NM_003391 ENSG00000105989 WNT2 INT1L1|IRP Wnt family member 2 protein-coding 421.667-3 chr6 71612071 71612364 + 1.66667 NA Intergenic Intergenic 191190 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 270 chr1 53356360 53356622 + 1.66667 NA Intergenic L1ME2z|LINE|L1 28258 NR_131923 105378732 Hs.118609 NR_131923 ENSG00000225675 LINC01771 - long intergenic non-protein coding RNA 1771 ncRNA 398-3 chr3 71701478 71701983 + 1.66667 NA intron (NM_173359, intron 3 of 7) intron (NM_173359, intron 3 of 7) 23672 NM_001134651 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 347.167-4 chr8 79208438 79208768 + 1.66667 NA Intergenic Intergenic -123585 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 403.333 chr1 106020528 106021142 + 1.66667 NA intron (NR_146609, intron 3 of 5) intron (NR_146609, intron 3 of 5) 7418 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 181-12 chr11 35168923 35169112 + 1.66667 NA intron (NM_001001389, intron 1 of 16) intron (NM_001001389, intron 1 of 16) 6067 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 236.667-41 chrX 99069121 99069343 + 1.66667 NA Intergenic MER3|DNA|hAT-Charlie 1341041 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 200.334-5 chr2 226830311 226830483 + 1.66667 NA intron (NM_001349069, intron 3 of 8) MLT1A0|LTR|ERVL-MaLR -5657 NM_032276 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 358.501 chr3 163249867 163250425 + 1.66667 NA intron (NR_033945, intron 2 of 6) intron (NR_033945, intron 2 of 6) 53155 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 318 chr1 102293484 102293811 + 1.66667 NA Intergenic L1PA13|LINE|L1 -296413 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 429.5-2 chr3 27303022 27303492 + 1.66667 NA intron (NM_152534, intron 13 of 38) intron (NM_152534, intron 13 of 38) 66126 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 237.333-18 chr2 84152708 84152896 + 1.66667 NA Intergenic (CAT)n|Simple_repeat|Simple_repeat -137880 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 260-20 chr5 91707384 91707591 + 1.66667 NA Intergenic L1MEg|LINE|L1 -324170 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 277.5-2 chr14 37327399 37327689 + 1.66667 NA intron (NM_138731, intron 10 of 13) AluJo|SINE|Alu 129607 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 291.666 chr21 21270325 21270589 + 1.66667 NA intron (NM_001352592, intron 2 of 18) intron (NM_001352592, intron 2 of 18) 123295 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 293-9 chr8 112883381 112883724 + 1.66667 NA intron (NM_001363185, intron 8 of 66) L1MD3|LINE|L1 240059 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 432.5-4 chr9 114191021 114191527 + 1.66667 NA intron (NM_032888, intron 5 of 60) L1PA10|LINE|L1 -18160 NR_030255 619556 NR_030255 ENSG00000207726 MIR455 MIRN455|hsa-mir-455|mir-455 microRNA 455 ncRNA 304.333-8 chr5 102768648 102768853 + 1.66667 NA intron (NR_157231, intron 1 of 14) L1MA3|LINE|L1 13445 NR_157231 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 198.5-25 chr20 57189049 57189284 + 1.66667 NA intron (NM_001719, intron 3 of 6) intron (NM_001719, intron 3 of 6) -24530 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 287-12 chr8 77690256 77690490 + 1.66667 NA Intergenic L1MCa|LINE|L1 239676 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 199.167-29 chr4 66064073 66064200 + 1.66667 NA Intergenic Intergenic -212688 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 243.5-6 chr12 95103996 95104191 + 1.66667 NA intron (NM_018351, intron 14 of 20) intron (NM_018351, intron 14 of 20) -30475 NM_001032287 7181 Hs.108301 NM_003297 ENSG00000120798 NR2C1 TR2 nuclear receptor subfamily 2 group C member 1 protein-coding 286.834-3 chr5 13435865 13436092 + 1.66667 NA Intergenic Intergenic -403092 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 604.501 chr12 51724989 51725692 + 1.66667 NA intron (NM_001369788, intron 12 of 25) L1ME4a|LINE|L1 106577 NM_001013690 401720 Hs.648218 NM_001013690 ENSG00000261308 FIGNL2 - fidgetin like 2 protein-coding 177.5-55 chr3 112506019 112506144 + 1.66667 NA Intergenic Intergenic -6609 NM_001085357 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 353.5-8 chr7 77972478 77973104 + 1.66667 NA Intergenic L1ME1|LINE|L1 132661 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 206-3 chr10 108984028 108984189 + 1.66667 NA Intergenic Intergenic -914815 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 121.667-105 chr8 124026178 124026293 + 1.66667 NA intron (NM_001039112, intron 18 of 40) intron (NM_001039112, intron 18 of 40) 14547 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 420-2 chr16 34593204 34593634 + 1.66667 NA Intergenic (GATTCCATTC)n|Simple_repeat|Simple_repeat -211939 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 228.834-3 chr4 125949681 125949874 + 1.66667 NA Intergenic Intergenic 442518 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 340.5-4 chr2 105545755 105546311 + 1.66667 NA Intergenic Intergenic 64526 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 358.834-2 chr8 124572112 124572368 + 1.66667 NA intron (NM_001363294, intron 6 of 13) intron (NM_001363294, intron 6 of 13) 33117 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 438.501 chr1 245811479 245811780 + 1.66667 NA intron (NM_022743, intron 10 of 11) intron (NM_022743, intron 10 of 11) -577112 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 214-3 chr1 104309160 104309301 + 1.66667 NA Intergenic Intergenic 236207 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 142.5 chr1 72738017 72738154 + 1.66667 NA Intergenic Intergenic -455546 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 325.667 chr11 43628846 43629193 + 1.66667 NA Intergenic Intergenic 47625 NR_029697 406918 NR_029697 ENSG00000199077 MIR129-2 MIR-129b|MIRN129-2|mir-129-2 microRNA 129-2 ncRNA 230.334 chr11 3975951 3976155 + 1.66667 NA intron (NM_001277962, intron 2 of 12) L1ME1|LINE|L1 -118632 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 231.334-5 chr4 102335651 102335884 + 1.66667 NA intron (NM_022154, intron 1 of 7) intron (NM_022154, intron 1 of 7) 9424 NM_022154 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 222.834-3 chr17 64204061 64204210 + 1.66667 NA intron (NM_018469, intron 2 of 11) intron (NM_018469, intron 2 of 11) 26599 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 374-2 chr1 102121878 102122213 + 1.66667 NA Intergenic L1M2|LINE|L1 -124811 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 360 chr1 154581108 154581389 + 1.66667 NA TTS (NM_001193495) TTS (NM_001193495) 13470 NM_000748 1141 Hs.2306 NM_000748 ENSG00000160716 CHRNB2 EFNL3|nAChRB2 cholinergic receptor nicotinic beta 2 subunit protein-coding 351.667-7 chr2 181299291 181299510 + 1.66667 NA intron (NR_130784, intron 3 of 4) intron (NR_130784, intron 3 of 4) 6252 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 230.333-18 chr3 161904742 161904968 + 1.66667 NA Intergenic Intergenic 408047 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 456.667 chr10 60016158 60016497 + 1.66667 NA Intergenic MER5B|DNA|hAT-Charlie -55414 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 332.501 chr2 74545855 74546132 + 1.66667 NA intron (NM_032603, intron 4 of 13) L2a|LINE|L2 -3027 NM_001197260 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 244.167-10 chr2 31767242 31767612 + 1.66667 NA Intergenic Arthur1|DNA|hAT-Tip100 36553 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 156.834-5 chr3 100444630 100444777 + 1.66667 NA intron (NM_001085451, intron 2 of 3) MER4-int|LTR|ERV1 43164 NM_001085451 348801 Hs.591294 NM_001085451 ENSG00000206535 LNP1 NP3 leukemia NUP98 fusion partner 1 protein-coding 446.667 chr2 210624464 210624963 + 1.66667 NA intron (NR_163592, intron 11 of 27) intron (NR_163592, intron 11 of 27) 7142 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 304.001 chr14 61677163 61677482 + 1.66667 NA Intergenic MER106B|DNA|hAT-Charlie -18191 NM_001530 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 363 chr10 23466954 23467252 + 1.66667 NA Intergenic THE1B|LTR|ERVL-MaLR 27834 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 483.667-2 chr22 34955393 34955695 + 1.66667 NA intron (NR_138042, intron 1 of 4) A-rich|Low_complexity|Low_complexity 42372 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 211-23 chr2 185624759 185624901 + 1.66667 NA Intergenic Intergenic 113889 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 311-9 chr8 128439763 128440360 + 1.66667 NA intron (NR_121672, intron 2 of 7) L1PA13|LINE|L1 124618 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 269.5-14 chr3 181344315 181344793 + 1.66667 NA intron (NR_075091, intron 3 of 7) CR1-3_Croc|LINE|CR1 97932 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 474.5-3 chr8 78091154 78091575 + 1.66667 NA Intergenic Intergenic -424976 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 186.333-54 chr8 92424472 92424665 + 1.66667 NA Intergenic Intergenic 230926 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 335-5 chr4 45777451 45777774 + 1.66667 NA Intergenic Intergenic 346442 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 262-11 chr2 218522765 218523010 + 1.66667 NA intron (NM_020935, intron 10 of 25) AluSx|SINE|Alu 45464 NM_020935 57695 Hs.166068 NM_020935 ENSG00000135913 USP37 - ubiquitin specific peptidase 37 protein-coding 268-5 chr17 33512086 33512319 + 1.66667 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 21558 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 475.333 chr9 28483923 28484618 + 1.66667 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 235035 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 142.834 chr10 86794576 86794687 + 1.66667 NA intron (NM_004329, intron 1 of 12) intron (NM_004329, intron 1 of 12) 37992 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 261-6 chr11 90471035 90471319 + 1.66667 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 84680 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 503.167 chr1 43782489 43782966 + 1.66667 NA intron (NM_001270465, intron 2 of 7) MIR|SINE|MIR -55384 NR_125986 101929592 NR_125986 ENSG00000229444 LOC101929592 - uncharacterized LOC101929592 ncRNA 254.167-20 chr8 31556948 31557180 + 1.66667 NA Intergenic L1MB3|LINE|L1 -82688 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 498.667-2 chr7 77772497 77773317 + 1.66667 NA intron (NM_198467, intron 5 of 7) intron (NM_198467, intron 5 of 7) 25527 NM_032936 85025 Hs.19025 NM_032936 ENSG00000135211 TMEM60 C7orf35|DC32 transmembrane protein 60 protein-coding 210.834-5 chr8 88057760 88057926 + 1.66667 NA intron (NM_005941, intron 7 of 9) L2a|LINE|L2 -183828 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 160.5-34 chr3 97403140 97403277 + 1.66667 NA intron (NM_001080448, intron 5 of 17) L1MC5|LINE|L1 -36399 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 209-20 chr14 96951818 96952255 + 1.66667 NA Intergenic Intergenic 8457 NR_104113 145249 Hs.592323 NR_104113 ENSG00000225163 LINC00618 C14orf63 long intergenic non-protein coding RNA 618 ncRNA 155-47 chr22 45849289 45849548 + 1.66667 NA Intergenic L2a|LINE|L2 88894 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 171.667-22 chr14 52988359 52988548 + 1.66667 NA Intergenic Plat_L3|LINE|CR1 -37356 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 249.334-7 chr22 42471128 42471377 + 1.66667 NA Intergenic MLT1F1|LTR|ERVL-MaLR -29327 NR_027786 94009 Hs.360940 NM_170694 ENSG00000172250 SERHL BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1 serine hydrolase like (pseudogene) pseudo 246-12 chr2 113688858 113689134 + 1.66667 NA Intergenic L1M4a1|LINE|L1 32372 NR_039943 100616208 NR_039943 ENSG00000265429 MIR4782 - microRNA 4782 ncRNA 249.167-7 chr18 71488482 71488644 + 1.66667 NA Intergenic HAL1b|LINE|L1 90393 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 240.334-4 chr18 3584009 3584350 + 1.66667 NA intron (NM_001242761, intron 7 of 11) intron (NM_001242761, intron 7 of 11) -9935 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 238-8 chr14 61990898 61991071 + 1.66667 NA intron (NM_001367657, intron 3 of 6) intron (NM_001367657, intron 3 of 6) 63289 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 239-10 chr18 24789239 24789401 + 1.66667 NA Intergenic L1MEf|LINE|L1 63539 NR_134604 105372028 Hs.569901 NR_134604 ENSG00000266573 LOC105372028 - uncharacterized LOC105372028 ncRNA 375.501 chr2 27181964 27182359 + 1.66667 NA Intergenic Intergenic -29870 NM_080592 51374 Hs.9527 NM_016085 ENSG00000138085 ATRAID APR--3|APR-3|APR3|C2orf28|HSPC013|PRO240|p18 all-trans retinoic acid induced differentiation factor protein-coding 515.001 chr4 56322773 56323105 + 1.66667 NA intron (NM_020722, intron 8 of 10) AluSx1|SINE|Alu 64552 NM_181806 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 144.333-45 chr2 62784218 62784358 + 1.66667 NA intron (NM_001142615, intron 5 of 22) intron (NM_001142615, intron 5 of 22) 77391 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 364.667 chr2 60220406 60220886 + 1.66667 NA Intergenic Intergenic 162390 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 211.5-14 chr2 39957774 39957951 + 1.66667 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 40228 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 174-32 chr20 16356564 16356689 + 1.66667 NA intron (NM_024704, intron 22 of 25) intron (NM_024704, intron 22 of 25) 216822 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 186.667-54 chr3 100035020 100035180 + 1.66667 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) -70702 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 292.834 chr10 36601582 36602065 + 1.66667 NA Intergenic Intergenic -524034 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 433.667 chr18 13754866 13755374 + 1.66667 NA intron (NM_001308263, intron 11 of 11) L2c|LINE|L2 28447 NM_001308263 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 407.168-2 chr4 125119460 125119843 + 1.66667 NA Intergenic Intergenic -196761 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 428.334-4 chr20 1677616 1677891 + 1.66667 NA Intergenic L1MA9|LINE|L1 -19974 NM_001039508 55423 Hs.590883 NM_018556 ENSG00000089012 SIRPG CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1 signal regulatory protein gamma protein-coding 183.334-3 chr17 62155381 62155546 + 1.66667 NA Intergenic Intergenic -90185 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 320.333-2 chr12 40480043 40480467 + 1.66667 NA exon (NM_173600, exon 56 of 174) exon (NM_173600, exon 56 of 174) 86861 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 210-15 chr2 63205702 63205906 + 1.66667 NA intron (NR_148705, intron 13 of 16) L1MA2|LINE|L1 -86262 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 300-6 chr2 176485821 176486111 + 1.66667 NA Intergenic Intergenic 115086 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 251.834-6 chr4 112058939 112059419 + 1.66667 NA Intergenic Intergenic -86275 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 328.333-6 chr9 37082241 37082469 + 1.66667 NA intron (NR_036592, intron 1 of 1) MIR3|SINE|MIR 2459 NR_036592 100506710 Hs.446271 NR_036592 ENSG00000281649 EBLN3P EBLN3 endogenous Bornavirus like nucleoprotein 3, pseudogene pseudo 331.501-2 chr5 152199882 152200277 + 1.66667 NA intron (NR_109876, intron 1 of 2) L1ME1|LINE|L1 205200 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 205-25 chr3 28868709 28868844 + 1.66667 NA Intergenic L1MA4|LINE|L1 293498 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 271.5-9 chr17 62070902 62071126 + 1.66667 NA Intergenic Intergenic -5736 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 259.501 chr14 58845942 58846139 + 1.66667 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 17752 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 319.667-12 chr4 34475631 34475948 + 1.66667 NA Intergenic L1PA8|LINE|L1 -206042 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 205.334-9 chr5 172240273 172240434 + 1.66667 NA intron (NM_152277, intron 1 of 2) intron (NM_152277, intron 1 of 2) 43411 NM_152277 92181 Hs.131570 NM_152277 ENSG00000168246 UBTD2 DCUBP ubiquitin domain containing 2 protein-coding 301.667-11 chr4 155693202 155693495 + 1.66667 NA intron (NM_000856, intron 3 of 10) intron (NM_000856, intron 3 of 10) 25686 NM_001130684 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 328.167-3 chr3 5063944 5064262 + 1.66667 NA Intergenic Charlie1|DNA|hAT-Charlie -58189 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 448.334 chr8 53847634 53848106 + 1.66667 NA Intergenic L1MB7|LINE|L1 -3925 NM_170587 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 241.5-19 chr4 61527304 61527662 + 1.66667 NA intron (NM_001371343, intron 4 of 23) (AT)n|Simple_repeat|Simple_repeat 325311 NM_001371342 192.5-32 chr3 67825545 67825726 + 1.66667 NA intron (NR_109992, intron 3 of 6) L1M2b|LINE|L1 -165957 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 352.001-3 chr5 41988578 41988856 + 1.66667 NA Intergenic L1MCa|LINE|L1 63436 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 518.334 chr2 215264692 215265204 + 1.66667 NA Intergenic Intergenic -47111 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 320.334 chr11 130847370 130847590 + 1.66667 NA intron (NR_125383, intron 3 of 5) L3|LINE|CR1 14630 NR_125383 100507431 Hs.375101 NR_125383 LINC02551 - long intergenic non-protein coding RNA 2551 ncRNA 280-16 chr6 121118710 121118954 + 1.66667 NA intron (NR_104452, intron 30 of 35) intron (NR_104452, intron 30 of 35) 215648 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 629.834 chr5 43885595 43886393 + 1.66667 NA Intergenic Intergenic -282764 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 213-20 chr2 214500114 214500378 + 1.66667 NA intron (NM_001080500, intron 3 of 3) intron (NM_001080500, intron 3 of 3) -9936 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 175-34 chr20 6300774 6300924 + 1.66667 NA Intergenic Intergenic -125883 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 454.667 chr17 10285249 10285642 + 1.66667 NA Intergenic L1M5|LINE|L1 -86839 NM_201433 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 130.833-23 chr16 72237323 72237488 + 1.66667 NA Intergenic Intergenic -64955 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 357.834-2 chr4 71462583 71463207 + 1.66667 NA intron (NM_003759, intron 9 of 22) MIRb|SINE|MIR 123842 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 398.667-2 chr2 182937704 182938172 + 1.66667 NA intron (NM_013436, intron 24 of 30) intron (NM_013436, intron 24 of 30) -71301 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 364.501 chr18 71880434 71880704 + 1.66667 NA Intergenic Intergenic -98343 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 166-26 chr16 5388036 5388210 + 1.66667 NA Intergenic MLT1D|LTR|ERVL-MaLR 228127 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 351.334-3 chr5 14954566 14955039 + 1.66667 NA Intergenic MLT2C1|LTR|ERVL -83024 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 294.167-8 chr4 67700135 67700368 + 1.66667 NA intron (NM_018227, intron 1 of 32) intron (NM_018227, intron 1 of 32) 904 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 494.167 chr1 181471662 181472161 + 1.66667 NA Intergenic Intergenic -11606 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 408.667 chr10 62501533 62502048 + 1.66667 NA intron (NM_199451, intron 4 of 7) intron (NM_199451, intron 4 of 7) -18658 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 379.667-5 chr8 116310833 116311204 + 1.66667 NA intron (NR_046215, intron 1 of 13) L1MEd|LINE|L1 14041 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 123.333-98 chr6 140432013 140432148 + 1.66667 NA Intergenic L1MCa|LINE|L1 226828 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 304.167-9 chr6 93643296 93643539 + 1.66667 NA Intergenic LTR49-int|LTR|ERV1 -60600 NR_152794 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 255.834-5 chr2 2438845 2439222 + 1.66667 NA Intergenic L1MA9|LINE|L1 -107758 NM_001303052 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 265.667-20 chr7 6390683 6391022 + 1.66667 NA intron (NM_006908, intron 2 of 5) L1M5|LINE|L1 16325 NM_018890 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|MRD48|Rac-1|TC-25|p21-Rac1 Rac family small GTPase 1 protein-coding 322.834-3 chr2 56339420 56339783 + 1.66667 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -153831 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 224.167-2 chr1 71741043 71741281 + 1.66667 NA intron (NM_173808, intron 3 of 6) intron (NM_173808, intron 3 of 6) 95850 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 264.667-10 chr15 60451671 60451935 + 1.66667 NA 3' UTR (NM_001276385, exon 9 of 9) 3' UTR (NM_001276385, exon 9 of 9) 27339 NM_001018089 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 294.334-6 chr7 38621260 38621515 + 1.66667 NA intron (NM_001635, intron 1 of 20) L2a|LINE|L2 9986 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 335.834-2 chr15 89231967 89232266 + 1.66667 NA Intergenic Intergenic -10537 NM_000326 6017 Hs.1933 NM_000326 ENSG00000140522 RLBP1 CRALBP retinaldehyde binding protein 1 protein-coding 186.333-44 chr4 47727680 47727918 + 1.66667 NA intron (NM_006587, intron 5 of 21) Charlie2a|DNA|hAT-Charlie 75130 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 427-3 chr8 76944757 76945452 + 1.66667 NA Intergenic L1M2|LINE|L1 21746 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 321 chr10 44074799 44075256 + 1.66667 NA Intergenic MSTA|LTR|ERVL-MaLR 162625 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 317.667-6 chr6 82773482 82773712 + 1.66667 NA Intergenic Intergenic 292244 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 313.834 chr14 48844056 48844349 + 1.66667 NA Intergenic Intergenic 742178 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 443.501 chr7 124522068 124522400 + 1.66667 NA Intergenic L1PA15|LINE|L1 -170138 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 343.666 chr1 97787770 97788145 + 1.66667 NA intron (NM_000110, intron 3 of 22) intron (NM_000110, intron 3 of 22) -8964 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 246.834-3 chr17 63735490 63735684 + 1.66667 NA intron (NR_156741, intron 1 of 11) intron (NR_156741, intron 1 of 11) 6212 NR_156741 92335 Hs.514402 NM_153335 ENSG00000266173 STRADA LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk STE20 related adaptor alpha protein-coding 629.667 chr15 92489116 92489831 + 1.66667 NA intron (NR_161371, intron 2 of 2) HAL1|LINE|L1 17796 NR_161371 145858 Hs.367879 NM_153040 C15orf32 - chromosome 15 open reading frame 32 ncRNA 307.667-13 chr8 107155892 107156210 + 1.66667 NA Intergenic MIR|SINE|MIR 180464 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 499.334 chr2 167378265 167378782 + 1.66667 NA Intergenic L1PA16|LINE|L1 191151 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 277.667-4 chr12 39177844 39178044 + 1.66667 NA Intergenic Intergenic 265176 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 302.5-11 chr6 142169105 142169464 + 1.66667 NA intron (NM_001286371, intron 2 of 6) intron (NM_001286371, intron 2 of 6) 22021 NM_016485 51534 Hs.431367 NM_016485 ENSG00000009844 VTA1 C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1 vesicle trafficking 1 protein-coding 355-4 chr12 12224307 12224629 + 1.66667 NA intron (NM_002336, intron 2 of 22).2 intron (NM_002336, intron 2 of 22).2 42576 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 190.334-2 chr3 20508652 20508801 + 1.66667 NA Intergenic L1PA15-16|LINE|L1 166258 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 412.001 chr4 120106006 120106301 + 1.66667 NA Intergenic MamRep1894|DNA|hAT -39305 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 417.334-3 chr7 81889258 81889592 + 1.66667 NA Intergenic Intergenic -119378 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 410.833-2 chr11 75220801 75221493 + 1.66667 NA Intergenic L1PA13|LINE|L1 -19627 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein like protein-coding 274.167-8 chr8 101565647 101565911 + 1.66667 NA intron (NM_024915, intron 4 of 15) MLT1J2|LTR|ERVL-MaLR 73340 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 368.168 chr7 11994612 11995014 + 1.66667 NA Intergenic Intergenic -162615 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 471.667 chr11 25866938 25867286 + 1.66667 NA Intergenic Intergenic -322011 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 275-8 chr3 3419373 3419596 + 1.66667 NA Intergenic Intergenic -239767 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 289.667 chr1 95231519 95231825 + 1.66667 NA intron (NM_001199691, intron 7 of 7) intron (NM_001199691, intron 7 of 7) 2310 NR_125948 101928118 Hs.656443 NR_125948 ENSG00000226026 LOC101928118 - uncharacterized LOC101928118 ncRNA 259.334-2 chr15 83849767 83850043 + 1.66667 NA intron (NM_207517, intron 7 of 29) intron (NM_207517, intron 7 of 29) 195782 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 328.334-2 chr3 165315588 165315891 + 1.66667 NA intron (NR_125764, intron 1 of 5) L1MA3|LINE|L1 108779 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 203.333-45 chr7 107860470 107860670 + 1.66667 NA Intergenic MIR|SINE|MIR -30537 NM_001289752 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 378.167-2 chr4 36666488 36666927 + 1.66667 NA Intergenic Intergenic -24807 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 257.167-16 chr9 95969651 95970066 + 1.66667 NA intron (NM_020207, intron 14 of 18) intron (NM_020207, intron 14 of 18) 51953 NR_024129 100188953 Hs.434310 NR_024129 ENSG00000225194 LINC00092 NCRNA00092 long intergenic non-protein coding RNA 92 ncRNA 351.5-6 chr7 50162777 50163189 + 1.66667 NA Intergenic LTR32|LTR|ERVL 66897 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 350-8 chr6 151289334 151289741 + 1.66667 NA intron (NM_005100, intron 2 of 4) intron (NM_005100, intron 2 of 4) -35994 NM_144497 9590 Hs.371240 NM_005100 ENSG00000131016 AKAP12 AKAP250|SSeCKS A-kinase anchoring protein 12 protein-coding 488.001 chr8 82816471 82816870 + 1.66667 NA Intergenic L1MA4|LINE|L1 -95434 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 348.001 chr14 42596274 42596796 + 1.66667 NA Intergenic L1MB7|LINE|L1 989679 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 127-68 chr3 102312696 102312788 + 1.66667 NA Intergenic L1MA3|LINE|L1 -122273 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 206-25 chr3 191396623 191396800 + 1.66667 NA 3' UTR (NM_174908, exon 11 of 11) 3' UTR (NM_174908, exon 11 of 11) -28813 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 353.5-3 chr15 62313494 62314028 + 1.66667 NA Intergenic L1ME1|LINE|L1 -9027 NR_107034 102465869 NR_107034 ENSG00000277919 MIR8067 hsa-mir-8067 microRNA 8067 ncRNA 375.334 chr2 36575955 36576240 + 1.66667 NA intron (NM_001042548, intron 5 of 8) intron (NM_001042548, intron 5 of 8) 22071 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 344.667-5 chr8 40616707 40616978 + 1.66667 NA intron (NM_001135731, intron 4 of 5) L1PA5|LINE|L1 -273479 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 237.333-8 chr12 519620 519824 + 1.66667 NA intron (NM_173593, intron 1 of 19) UCON72|Unknown|Unknown 59783 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 240.333-29 chr8 85316553 85316788 + 1.66667 NA Intergenic L2c|LINE|L2 25044 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 192.5-2 chr1 167750681 167750916 + 1.66667 NA intron (NM_024569, intron 1 of 4) L1MC4|LINE|L1 28816 NM_001146191 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 353.333-8 chr9 20886682 20887042 + 1.66667 NA intron (NM_017794, intron 23 of 45) (TAA)n|Simple_repeat|Simple_repeat 99935 NR_145762 109616992 NR_145762 ENSG00000202189 SNORA30B - small nucleolar RNA, H/ACA box 30B snoRNA 141.667-62 chr3 21718104 21718252 + 1.66667 NA intron (NM_024697, intron 1 of 7) intron (NM_024697, intron 1 of 7) 33032 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 375-3 chr5 113927777 113928096 + 1.66667 NA Intergenic Intergenic 414242 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 322.5 chr1 48400165 48400466 + 1.66667 NA intron (NM_019073, intron 6 of 12) intron (NM_019073, intron 6 of 12) 71889 NM_019073 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 490.667 chr12 9010408 9011213 + 1.66667 NA TTS (NM_001329099) TTS (NM_001329099) 21185 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 315.833-3 chr2 115841362 115841727 + 1.66667 NA intron (NM_001178037, intron 25 of 25) intron (NM_001178037, intron 25 of 25) 497729 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 217.5-36 chr5 19001882 19002132 + 1.66667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 884265 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 237.667-7 chr20 5992840 5993031 + 1.66667 NA intron (NR_110101, intron 4 of 4) intron (NR_110101, intron 4 of 4) 12886 NR_110101 101929225 Hs.635771 NR_110101 ENSG00000278719 MCM8-AS1 - MCM8 antisense RNA 1 ncRNA 168.667-73 chr7 41016656 41016819 + 1.66667 NA Intergenic LTR85a|LTR|Gypsy? -36798 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 200.667-47 chr5 163980768 163980895 + 1.66667 NA Intergenic Intergenic 475212 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 389.501 chr3 188988332 188988750 + 1.66667 NA Intergenic Intergenic -40902 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 201-32 chr5 19765640 19765897 + 1.66667 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 120504 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 383.167 chr5 8267268 8267814 + 1.66667 NA Intergenic Intergenic 190023 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 244.334-6 chr7 38490484 38490728 + 1.66667 NA intron (NM_001635, intron 5 of 20) intron (NM_001635, intron 5 of 20) 140767 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 305-6 chr8 80144243 80144605 + 1.66667 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 26697 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 270.334-8 chr4 42068971 42069213 + 1.66667 NA intron (NM_006345, intron 14 of 17) intron (NM_006345, intron 14 of 17) 78562 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 190-56 chr6 70313446 70313685 + 1.66667 NA Intergenic L2b|LINE|L2 -10481 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 242.666-4 chr2 11285869 11286199 + 1.66667 NA intron (NM_001321643, intron 3 of 32) intron (NM_001321643, intron 3 of 32) 58602 NM_004850 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 317.334-3 chr20 44213226 44213471 + 1.66667 NA intron (NR_038337, intron 1 of 2) intron (NR_038337, intron 1 of 2) 2262 NR_038337 100505783 Hs.159049 NR_038337 ENSG00000223891 OSER1-DT OSER1-AS1 OSER1 divergent transcript ncRNA 303-7 chr3 197224243 197224661 + 1.66667 NA intron (NM_001366216, intron 4 of 23) intron (NM_001366216, intron 4 of 23) -40321 NM_001204388 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 340.333 chr10 41758979 41759375 + 1.66667 NA Intergenic ALR/Alpha|Satellite|centr 608868 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 207.667-25 chr20 46461429 46461577 + 1.66667 NA Intergenic Intergenic 3789 NR_026640 7686 Hs.717103 NR_026640 ENSG00000225849 MKRN7P MKRNP3|ZNF127L5|dJ981L23.2 makorin ring finger protein 7, pseudogene pseudo 253-15 chr4 67005054 67005512 + 1.66667 NA Intergenic L2|LINE|L2 416717 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 440.667-2 chr2 204330718 204331162 + 1.66667 NA Intergenic Intergenic -214535 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 251.667-13 chr3 72850373 72850740 + 1.66667 NA Intergenic Intergenic -2111 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 323.667-3 chr11 116015416 116015732 + 1.66667 NA Intergenic L1MA9|LINE|L1 -255374 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 196.334-8 chr5 155848634 155848894 + 1.66667 NA Intergenic Intergenic -477993 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 202-12 chr15 33146734 33146881 + 1.66667 NA intron (NM_001277313, intron 4 of 20) intron (NM_001277313, intron 4 of 20) 47907 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 355.667-7 chr4 146091199 146091593 + 1.66667 NA Intergenic AluSp|SINE|Alu 30517 NR_038331 100505545 Hs.122199 NR_038331 ENSG00000248809 LINC01095 - long intergenic non-protein coding RNA 1095 ncRNA 162.334-8 chr6 139737704 139737832 + 1.66667 NA Intergenic Intergenic -33305 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 128.834-2 chr10 56615280 56615467 + 1.66667 NA Intergenic L1MD1|LINE|L1 -254100 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 199.167-31 chr4 170951417 170951555 + 1.66667 NA Intergenic Intergenic -89116 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 305.833-3 chr2 165002139 165002500 + 1.66667 NA Intergenic Intergenic -46794 NM_173512 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 285-2 chr10 51272454 51272773 + 1.66667 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -26960 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 312-4 chr3 119517371 119517706 + 1.66667 NA intron (NM_016589, intron 6 of 6) intron (NM_016589, intron 6 of 6) 18991 NM_016589 51300 Hs.477287 NM_016589 ENSG00000113845 TIMMDC1 C3orf1|MC1DN31 translocase of inner mitochondrial membrane domain containing 1 protein-coding 195.833-26 chr6 167164094 167164273 + 1.66667 NA Intergenic Intergenic 5797 NR_134592 105378123 Hs.119929 NR_134592 LOC105378123 - uncharacterized LOC105378123 ncRNA 242.5-23 chr8 112345910 112346170 + 1.66667 NA intron (NM_001363185, intron 37 of 66) intron (NM_001363185, intron 37 of 66) -297453 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 352.667-2 chr10 53154226 53154603 + 1.66667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -382714 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 305-4 chr5 28118143 28118384 + 1.66667 NA Intergenic MER110-int|LTR|ERV1 169402 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 248.167-17 chr4 30502326 30502642 + 1.66667 NA Intergenic ERVL-B4-int|LTR|ERVL -217885 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 281-20 chr8 24867612 24867867 + 1.5 NA Intergenic Intergenic -46022 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 122.167-53 chr4 118095314 118095438 + 1.5 NA intron (NM_004784, intron 2 of 13) intron (NM_004784, intron 2 of 13) 60890 NR_146514 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 292.334-5 chr8 116733678 116733951 + 1.5 NA intron (NM_003756, intron 1 of 7) Charlie1a|DNA|hAT-Charlie 22009 NM_003756 8667 Hs.492599 NM_003756 ENSG00000147677 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3 subunit H protein-coding 187.333-61 chr4 99036763 99037096 + 1.5 NA intron (NM_015143, intron 4 of 10) L1ME4b|LINE|L1 39542 NR_037455 100500867 NR_037455 ENSG00000265213 MIR3684 - microRNA 3684 ncRNA 293.001 chr1 114938892 114939205 + 1.5 NA intron (NM_001282542, intron 23 of 30) L1M3|LINE|L1 84185 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 461.001 chr16 17683123 17683554 + 1.5 NA Intergenic Intergenic -212378 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 197.167-27 chr2 103967138 103967460 + 1.5 NA Intergenic Intergenic 441033 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 201.167-8 chr14 56190045 56190291 + 1.5 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 71757 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 208-34 chr6 153314060 153314388 + 1.5 NA Intergenic Intergenic -182942 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 153.667-2 chr1 9672809 9672938 + 1.5 NA intron (NR_126367, intron 1 of 1) intron (NR_126367, intron 1 of 1) 14701 NR_126368 101929074 Hs.661762 NR_126366 ENSG00000231789 PIK3CD-AS2 - PIK3CD antisense RNA 2 ncRNA 273.333-18 chr4 100617425 100617888 + 1.5 NA Intergenic MLT1B-int|LTR|ERVL-MaLR 57457 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 232-22 chr4 48717936 48718116 + 1.5 NA intron (NM_015030, intron 1 of 63) intron (NM_015030, intron 1 of 63) 62273 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 276.334-5 chr9 30073654 30073929 + 1.5 NA Intergenic Intergenic 334663 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 182.5-19 chr2 50693161 50693396 + 1.5 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 2984 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 252.334-2 chr11 22937395 22937631 + 1.5 NA Intergenic Intergenic -77039 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 213.167-7 chr12 819835 820025 + 1.5 NA intron (NM_001184985, intron 2 of 27) L1MB5|LINE|L1 67007 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 183-5 chr10 53289337 53289498 + 1.5 NA Intergenic Intergenic -517717 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 243.5-18 chr20 14374268 14374561 + 1.5 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -36747 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 138.833-45 chr20 14446167 14446318 + 1.5 NA intron (NM_001351663, intron 3 of 17) (AAT)n|Simple_repeat|Simple_repeat -108142 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 244-2 chr10 20177830 20178088 + 1.5 NA intron (NM_032812, intron 9 of 13) intron (NM_032812, intron 9 of 13) 361527 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 188.334 chr1 68733013 68733186 + 1.5 NA Intergenic L2a|LINE|L2 -236017 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 250.166 chr11 83095234 83095499 + 1.5 NA Intergenic Intergenic 23300 NR_038903 100506233 Hs.503429 NR_038903 ENSG00000246067 RAB30-DT RAB30-AS1 RAB30 divergent transcript ncRNA 293.167-5 chr18 12710312 12710654 + 1.5 NA intron (NM_147163, intron 2 of 6) intron (NM_147163, intron 2 of 6) 7441 NM_020232 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 327.167 chr11 100123998 100124425 + 1.5 NA intron (NM_001243270, intron 12 of 23) MIR|SINE|MIR -563077 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 247.833-5 chr21 18412786 18413067 + 1.5 NA Intergenic Intergenic -9141 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 177.667-17 chr12 69634215 69634364 + 1.5 NA Intergenic Intergenic -23382 NM_201550 376132 Hs.448708 NM_201550 ENSG00000198812 LRRC10 HRLRRP|LRRC10A leucine rich repeat containing 10 protein-coding 245.833 chr1 7032297 7032566 + 1.5 NA intron (NM_001349608, intron 2 of 21) L1MEc|LINE|L1 246977 NM_015215 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 236.667-40 chrX 98023598 98023799 + 1.5 NA Intergenic Intergenic -459163 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 176.5-6 chr10 44327502 44327699 + 1.5 NA Intergenic Intergenic 34850 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 225.5-34 chr3 25475911 25476170 + 1.5 NA intron (NR_110892, intron 2 of 6) MLT1I|LTR|ERVL-MaLR 17730 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 466.334 chr11 115556378 115556963 + 1.5 NA Intergenic Intergenic -52255 NM_001301043 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 235.5-33 chr8 76767764 76768293 + 1.5 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -84753 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 229.167-11 chr13 35879177 35879455 + 1.5 NA intron (NM_001330071, intron 4 of 16) intron (NM_001330071, intron 4 of 16) -23455 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 248.5-17 chr5 176758372 176758620 + 1.5 NA Intergenic AluJr4|SINE|Alu 15291 NR_108030 102577424 Hs.349025 NR_108030 ENSG00000248859 LINC01574 HI-LNC12 long intergenic non-protein coding RNA 1574 ncRNA 241.167-2 chr14 29225934 29226359 + 1.5 NA Intergenic Intergenic -440359 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 131.834-3 chr2 58996977 58997104 + 1.5 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -220668 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 218.833-7 chr11 131783742 131783900 + 1.5 NA intron (NM_001352006, intron 2 of 9) L1ME3|LINE|L1 -120265 NR_126159 101929637 Hs.730330 NM_207432 ENSG00000224795 NTM-AS1 C11orf39 NTM antisense RNA 1 ncRNA 179.333-55 chr8 109896432 109896595 + 1.5 NA Intergenic Intergenic 79258 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 114.833-51 chr4 145284239 145284318 + 1.5 NA Intergenic Intergenic 56141 NR_147156 105377466 Hs.405641 NR_147156 ENSG00000272727 LINC02266 - long intergenic non-protein coding RNA 2266 ncRNA 311.333-2 chr13 69399873 69400267 + 1.5 NA Intergenic Intergenic 177724 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 440.667 chr17 76836356 76836879 + 1.5 NA Intergenic AluSz|SINE|Alu -19549 NR_135283 283994 Hs.645372 NR_135283 ENSG00000267535 LINC00868 C17orf52 long intergenic non-protein coding RNA 868 ncRNA 205.167-19 chr17 65301048 65301238 + 1.5 NA Intergenic Intergenic -156398 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 226.5-7 chr10 6836669 6836911 + 1.5 NA intron (NR_038291, intron 3 of 4) intron (NR_038291, intron 3 of 4) 57192 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 132.667-94 chr8 79716409 79716540 + 1.5 NA Intergenic Charlie2a|DNA|hAT-Charlie 50001 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 389.5 chr20 23039662 23040089 + 1.5 NA Intergenic L2a|LINE|L2 4455 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 175.5-62 chr8 105683700 105683924 + 1.5 NA intron (NM_001362837, intron 5 of 7) L2c|LINE|L2 364269 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 275.333-19 chr6 5468520 5468904 + 1.5 NA intron (NM_006567, intron 4 of 6) intron (NM_006567, intron 4 of 6) -10637 NR_125846 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 292.5 chr1 46085167 46085471 + 1.5 NA intron (NM_001303427, intron 1 of 9) L2c|LINE|L2 45354 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 172.667-84 chr9 85497735 85497929 + 1.5 NA Intergenic L1M4c|LINE|L1 244197 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 245-13 chr20 56047442 56047642 + 1.5 NA Intergenic Intergenic -42023 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 180.167-57 chr8 82194884 82195064 + 1.5 NA Intergenic Intergenic -352688 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 178.333-38 chr4 74277609 74277767 + 1.5 NA intron (NR_147097, intron 8 of 9) intron (NR_147097, intron 8 of 9) -30782 NM_001270990 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 312-5 chr5 178931077 178931410 + 1.5 NA 5' UTR (NM_030613, exon 5 of 5) 5' UTR (NM_030613, exon 5 of 5) -9955 NM_001323308 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 169.5-50 chr4 85746987 85747163 + 1.5 NA intron (NM_001025616, intron 3 of 9) intron (NM_001025616, intron 3 of 9) 24607 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 273.333-6 chr15 96139210 96139472 + 1.5 NA intron (NR_125738, intron 3 of 4) intron (NR_125738, intron 3 of 4) -11500 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 183.167-43 chr5 30358151 30358348 + 1.5 NA Intergenic Intergenic 477689 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 396-7 chr8 29742169 29742502 + 1.5 NA intron (NR_026765, intron 1 of 3) FordPrefect_a|DNA|hAT-Tip100 5774 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 300.501-2 chr9 90236744 90237044 + 1.5 NA Intergenic MER49|LTR|ERV1 -195395 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 306.834-4 chr4 32213065 32213481 + 1.5 NA Intergenic Intergenic -137765 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 173.167-28 chr4 43107712 43107894 + 1.5 NA Intergenic L4_B_Mam|LINE|RTE-X 214537 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 233-15 chr2 206884640 206884891 + 1.5 NA Intergenic Intergenic -54753 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 271.833-11 chr20 62111288 62111767 + 1.5 NA Intergenic AluY|SINE|Alu -10948 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 216-25 chr4 98456500 98456678 + 1.5 NA Intergenic Intergenic 195205 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 178-67 chr8 108347353 108347523 + 1.5 NA Intergenic Intergenic -96145 NM_001329493 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 279.667-17 chr8 110660575 110660996 + 1.5 NA Intergenic Intergenic 366648 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 178.167-16 chr15 86335726 86335889 + 1.5 NA intron (NM_152336, intron 17 of 24) MIRc|SINE|MIR -18839 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 256.667-20 chr4 23381089 23381420 + 1.5 NA Intergenic L1ME3D|LINE|L1 500038 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 176.333-35 chr2 129657673 129657909 + 1.5 NA Intergenic L1MCa|LINE|L1 219700 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 542.999 chr5 35666709 35667168 + 1.5 NA intron (NM_144722, intron 8 of 9) intron (NM_144722, intron 8 of 9) 49075 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 342.5-7 chr17 77051091 77051577 + 1.5 NA Intergenic AluSg|SINE|Alu -37309 NR_027058 654434 Hs.720923 NR_027058 ENSG00000234912 SNHG20 C17orf86|LINC00338|NCRNA00338|SCARNA16HG small nucleolar RNA host gene 20 ncRNA 404.667 chr12 14757026 14757575 + 1.5 NA Intergenic L1MEj|LINE|L1 13831 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 318.5-3 chr13 97998914 97999240 + 1.5 NA intron (NM_002271, intron 12 of 28) AluSx1|SINE|Alu 45402 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 252.5-15 chr2 217297398 217297624 + 1.5 NA intron (NR_133642, intron 3 of 5) L1MEg|LINE|L1 14778 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 170.667-15 chr13 107813142 107813289 + 1.5 NA intron (NR_046848, intron 1 of 1) intron (NR_046848, intron 1 of 1) 22243 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 ncRNA 233.5-14 chr20 48571864 48572203 + 1.5 NA Intergenic MADE1|DNA|TcMar-Mariner 212122 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 311.167-5 chr6 12070597 12070891 + 1.5 NA intron (NM_002114, intron 2 of 8) intron (NM_002114, intron 2 of 8) 58432 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 135-85 chr6 134129573 134129672 + 1.5 NA Intergenic Intergenic -11942 NR_037938 387065 Hs.571061 NR_037938 HMGA1P7 HMGA1L7 high mobility group AT-hook 1 pseudogene 7 pseudo 291-8 chr3 45147989 45148305 + 1.5 NA Intergenic Intergenic -1725 NM_178181 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 181-34 chr2 37696512 37696695 + 1.5 NA Intergenic Intergenic -24068 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 329.167-3 chr2 171918818 171919207 + 1.5 NA Intergenic MIRc|SINE|MIR -3413 NR_027862 8520 Hs.632532 NM_003642 ENSG00000128708 HAT1 KAT1 histone acetyltransferase 1 protein-coding 240.167-5 chr12 117413326 117413750 + 1.5 NA Intergenic Intergenic -51736 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 184-55 chr6 70006680 70006902 + 1.5 NA intron (NM_001858, intron 11 of 50) L1M4a1|LINE|L1 140235 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 177-59 chr5 165014133 165014325 + 1.5 NA Intergenic Intergenic 543950 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 196.167-12 chr14 48821563 48821734 + 1.5 NA Intergenic L1PA16|LINE|L1 764732 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 169-13 chr14 39881128 39881292 + 1.5 NA Intergenic Intergenic -448710 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 179.167-34 chr4 66929970 66930178 + 1.5 NA Intergenic Intergenic 491926 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 390-8 chr7 46853144 46853493 + 1.5 NA Intergenic L1M4|LINE|L1 -156196 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 267-3 chr11 112561658 112561848 + 1.5 NA Intergenic LTR16C|LTR|ERVL -5951 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 257.667-11 chr2 175193687 175193975 + 1.5 NA Intergenic Intergenic -12121 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 306-3 chr10 56001549 56001820 + 1.5 NA Intergenic MIRb|SINE|MIR 359575 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 226.334-9 chr7 26655282 26655485 + 1.5 NA Intergenic Intergenic 17512 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 459.501 chr20 40182586 40183024 + 1.5 NA Intergenic L2b|LINE|L2 178344 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 136.5-46 chr2 19627740 19627861 + 1.5 NA Intergenic L1M2|LINE|L1 -241054 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 274.667-17 chr8 126058650 126058969 + 1.5 NA Intergenic Intergenic -107612 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 160.333-54 chr6 153421393 153421525 + 1.5 NA Intergenic Intergenic -290177 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 222.666-3 chr8 113771241 113771476 + 1.5 NA Intergenic Intergenic -334419 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 372-5 chr5 21602265 21602662 + 1.5 NA Intergenic Intergenic 142983 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 257-17 chr8 52474117 52474417 + 1.5 NA Intergenic Intergenic -64388 NM_001352834 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 436 chr7 28111063 28111452 + 1.5 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -69200 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 345.5-9 chr8 88028510 88028874 + 1.5 NA Intergenic Intergenic -154677 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 261-3 chr10 49604324 49604645 + 1.5 NA Intergenic L1ME3G|LINE|L1 -4611 NM_020984 1103 Hs.302002 NM_020549 ENSG00000070748 CHAT CHOACTASE|CMS1A|CMS1A2|CMS6 choline O-acetyltransferase protein-coding 147-67 chr5 37235134 37235266 + 1.5 NA intron (NM_023073, intron 8 of 51) L1PB4|LINE|L1 -13846 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 250 chr1 49869492 49869759 + 1.5 NA intron (NM_001323575, intron 1 of 12) L1PA10|LINE|L1 154329 NM_001323573 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 351.833-2 chr5 123821855 123822230 + 1.5 NA Intergenic Intergenic 276625 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 259.167-18 chr8 129424518 129424822 + 1.5 NA intron (NR_130920, intron 1 of 3) L1M1|LINE|L1 59472 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 501.5 chr7 52932849 52933229 + 1.5 NA Intergenic L1ME3B|LINE|L1 -102594 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 230.167-26 chr8 135763342 135763661 + 1.5 NA Intergenic Intergenic 306045 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 301.333-8 chr5 11938277 11938759 + 1.5 NA Intergenic L1MB1|LINE|L1 -34072 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 232.333-22 chr4 32761816 32761981 + 1.5 NA Intergenic Intergenic 410860 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 221.167-23 chr7 18466715 18466963 + 1.5 NA intron (NM_001204144, intron 3 of 12) intron (NM_001204144, intron 3 of 12) -28871 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 158.833-8 chr10 75482782 75482939 + 1.5 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) 51236 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 209.667 chr1 20584427 20584664 + 1.5 NA Intergenic L2b|LINE|L2 -4552 NM_001785 978 Hs.466910 NM_001785 ENSG00000158825 CDA CDD cytidine deaminase protein-coding 225-9 chr11 88289069 88289276 + 1.5 NA Intergenic Intergenic 48564 NM_001814 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 340.333-6 chr14 56147884 56148252 + 1.5 NA intron (NM_021255, intron 1 of 5) intron (NM_021255, intron 1 of 5) 29657 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 303.5-9 chr8 81191333 81191661 + 1.5 NA Intergenic MIRb|SINE|MIR -79429 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 262-17 chr4 181942156 181942433 + 1.5 NA Intergenic (T)n|Simple_repeat|Simple_repeat -112321 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 247.5-30 chr9 28345875 28346107 + 1.5 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 373314 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 143-58 chr4 165720657 165720833 + 1.5 NA intron (NR_121676, intron 3 of 5) intron (NR_121676, intron 3 of 5) 22326 NR_121677 101928131 Hs.406479 NR_121677 LOC101928131 - uncharacterized LOC101928131 ncRNA 365.5-5 chr6 56044131 56044535 + 1.5 NA Intergenic L1ME2|LINE|L1 47329 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 272.833-10 chr9 8375295 8375654 + 1.5 NA intron (NM_130392, intron 24 of 30) intron (NM_130392, intron 24 of 30) 358472 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 224.667-28 chr4 180766449 180766868 + 1.5 NA Intergenic Intergenic 392491 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 263.167-12 chr4 80646677 80647004 + 1.5 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) 311120 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 161.5-31 chr3 58300148 58300357 + 1.5 NA Intergenic MER53|DNA|hAT -5993 NM_001348715 109703458 Hs.446320 NM_001348712 ENSG00000255154 HTD2 - hydroxyacyl-thioester dehydratase type 2 protein-coding 310.5-15 chr6 64401620 64401954 + 1.5 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 594951 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 169.833-21 chr2 175234460 175234627 + 1.5 NA Intergenic Intergenic -52833 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 189.834-2 chr16 14127764 14127904 + 1.5 NA intron (NM_001365418, intron 3 of 5) intron (NM_001365418, intron 3 of 5) 56515 NM_001365412 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 265.667-5 chr12 19203367 19203695 + 1.5 NA intron (NM_019012, intron 3 of 25) intron (NM_019012, intron 3 of 25) -1794 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 173.833-48 chr5 89691206 89691342 + 1.5 NA Intergenic Intergenic 325446 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 145.5-46 chr3 88566609 88566813 + 1.5 NA Intergenic L1ME2|LINE|L1 228255 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 256.5-24 chr4 90466690 90467057 + 1.5 NA intron (NM_207491, intron 4 of 7) L1ME3A|LINE|L1 231842 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 270.667-18 chr4 146369271 146369533 + 1.5 NA intron (NM_001317816, intron 4 of 10) intron (NM_001317816, intron 4 of 10) -39181 NR_107003 102465837 NR_107003 ENSG00000278438 MIR7849 hsa-mir-7849 microRNA 7849 ncRNA 289.333-2 chr14 54049155 54049494 + 1.5 NA Intergenic Intergenic -92433 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 355.667-5 chr2 172865259 172865641 + 1.5 NA intron (NM_001282899, intron 1 of 27) LTR103b_Mam|LTR|ERV1? 5412 NM_001282900 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 228.5-30 chr7 7731725 7731934 + 1.5 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -13222 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 260.5-21 chr6 81357918 81358194 + 1.5 NA Intergenic Intergenic 394625 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 126.667-51 chr21 28524189 28524341 + 1.5 NA Intergenic Charlie1|DNA|hAT-Charlie -15053 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 171.5-43 chr21 29277257 29277452 + 1.5 NA intron (NR_027072, intron 1 of 1) L1ME2|LINE|L1 -21568 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 418.667 chr12 61902126 61902464 + 1.5 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 290544 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 281-11 chr2 19471670 19471999 + 1.5 NA Intergenic Intergenic -113211 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 294.833 chr15 59681694 59681928 + 1.5 NA intron (NM_001368060, intron 1 of 8) intron (NM_001368060, intron 1 of 8) 7115 NM_001320675 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 225.333-20 chr21 29458065 29458292 + 1.5 NA Intergenic Intergenic -37869 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 227.5-33 chr7 47023546 47023739 + 1.5 NA Intergenic Intergenic -326520 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 328-7 chr18 22946732 22947043 + 1.5 NA intron (NM_002894, intron 3 of 18) intron (NM_002894, intron 3 of 18) 13011 NM_203292 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 245.333-16 chr5 145741816 145742074 + 1.5 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat 93397 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 164-47 chr4 121926158 121926276 + 1.5 NA intron (NM_001130698, intron 2 of 11) MER65A|LTR|ERV1 6896 NM_003305 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 181.5-29 chr2 124297945 124298225 + 1.5 NA intron (NM_130773, intron 3 of 23) AluSg|SINE|Alu 272798 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 359.333 chr4 30354857 30355158 + 1.5 NA Intergenic MIR|SINE|MIR -365362 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 329.5-12 chr3 87204553 87204815 + 1.5 NA Intergenic Intergenic 21593 NR_039958 100616161 NR_039958 ENSG00000264119 MIR4795 - microRNA 4795 ncRNA 411.333-2 chr14 48495642 48495997 + 1.5 NA Intergenic Intergenic -700805 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 334.833-6 chr7 27441954 27442323 + 1.5 NA Intergenic L1ME4a|LINE|L1 -173836 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 376.5-4 chr10 131877308 131877787 + 1.5 NA Intergenic L1MC|LINE|L1 -23461 NM_018461 55844 Hs.380372 NM_018461 ENSG00000175470 PPP2R2D B55D|B55delta|MDS026 protein phosphatase 2 regulatory subunit Bdelta protein-coding 360.667 chr14 40598660 40599128 + 1.5 NA Intergenic Intergenic -355817 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 251-12 chr2 145550541 145550907 + 1.5 NA Intergenic Intergenic 882757 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 179-43 chr5 63047185 63047410 + 1.5 NA Intergenic LTR37A|LTR|ERV1 468478 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 387.166 chr20 35845319 35845891 + 1.5 NA intron (NM_016436, intron 3 of 17) AluJr4|SINE|Alu 73590 NM_016436 51230 Hs.517044 NM_016436 ENSG00000025293 PHF20 C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP PHD finger protein 20 protein-coding 339.667-3 chr3 46838806 46839153 + 1.5 NA Intergenic AluJb|SINE|Alu -4884 NR_160554 339906 Hs.585127 NM_182702 ENSG00000178055 PRSS42P PRSS42|TESSP2 serine protease 42, pseudogene pseudo 311.5-2 chr14 43052717 43052977 + 1.5 NA Intergenic Intergenic 1445991 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 126.5-29 chr14 86963461 86963571 + 1.5 NA Intergenic L1MA3|LINE|L1 57738 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 409.5-2 chr4 31025567 31026161 + 1.5 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -145280 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 230.833-4 chr14 72995405 72995764 + 1.5 NA intron (NM_021260, intron 3 of 11) intron (NM_021260, intron 3 of 11) -8628 NM_178441 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 185-32 chr21 19594876 19595121 + 1.5 NA Intergenic Intergenic 304757 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 386.666-2 chr20 16479693 16480313 + 1.5 NA intron (NM_001199866, intron 12 of 22) L1ME3A|LINE|L1 93445 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 321-9 chr3 118721904 118722143 + 1.5 NA intron (NR_135547, intron 1 of 3) L1M5|LINE|L1 80255 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 452.5-5 chr7 110601762 110602111 + 1.5 NA Intergenic Intergenic -489070 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 202-48 chr9 37762536 37762838 + 1.5 NA intron (NR_104612, intron 3 of 8) intron (NR_104612, intron 3 of 8) 8882 NM_144964 158234 Hs.655614 NM_144964 ENSG00000165275 TRMT10B RG9MTD3|bA3J10.9 tRNA methyltransferase 10B protein-coding 142.334-2 chr15 26111785 26111901 + 1.5 NA Intergenic Intergenic -3970 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 121.333-115 chr9 31308434 31308572 + 1.5 NA Intergenic Intergenic 72987 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 302.334 chr10 110943730 110943947 + 1.5 NA intron (NR_136749, intron 1 of 7) intron (NR_136749, intron 1 of 7) -6583 NR_026715 644511 Hs.632083 NR_026715 ENSG00000234118 RPL13AP6 RPL13A_7_1096|bA348N5.5 ribosomal protein L13a pseudogene 6 pseudo 255-9 chr19 47585870 47586072 + 1.5 NA Intergenic LTR26|LTR|ERV1 -12823 NM_001277075 84215 Hs.14161 NM_032255 ENSG00000118156 ZNF541 - zinc finger protein 541 protein-coding 266.167-18 chr5 59269136 59269346 + 1.5 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 6874 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 264.167-10 chr14 83102660 83103089 + 1.5 NA Intergenic L1M5|LINE|L1 460242 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 267.333-3 chr10 52471559 52471957 + 1.5 NA Intergenic Intergenic -1225 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 216.5-7 chr14 64838090 64838402 + 1.5 NA intron (NM_001355436, intron 1 of 35) L1ME1|LINE|L1 -14866 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 204.166-2 chr2 150289077 150289345 + 1.5 NA Intergenic Intergenic -32204 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 217.666-4 chr9 85117285 85117522 + 1.5 NA Intergenic Intergenic 411502 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 334.333 chr1 114879287 114879722 + 1.5 NA intron (NM_001282542, intron 12 of 30) intron (NM_001282542, intron 12 of 30) 24641 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 281.334-2 chr14 33548354 33548863 + 1.5 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -160329 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 281.001 chr22 32659254 32659629 + 1.5 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -141375 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 216.5-31 chr8 9039632 9039922 + 1.5 NA intron (NM_001354638, intron 6 of 7) Charlie2a|DNA|hAT-Charlie -8668 NR_039804 100616350 NR_039804 ENSG00000263407 MIR4660 - microRNA 4660 ncRNA 363.833 chr2 109413660 109414110 + 1.5 NA intron (NM_001099289, intron 4 of 9) intron (NM_001099289, intron 4 of 9) -100260 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 119.5-106 chr9 30003431 30003539 + 1.5 NA Intergenic Intergenic 404969 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 311.501-2 chr8 127016268 127016514 + 1.5 NA intron (NR_045262, intron 1 of 1) intron (NR_045262, intron 1 of 1) 3237 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 208.834-2 chr10 89598532 89599170 + 1.5 NA intron (NM_148977, intron 3 of 6) intron (NM_148977, intron 3 of 6) -6024 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 264.333-3 chr11 37536853 37537181 + 1.5 NA Intergenic Intergenic -401584 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 161.5-18 chr17 72945167 72945417 + 1.5 NA intron (NM_139177, intron 5 of 9) intron (NM_139177, intron 5 of 9) 147396 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 123.167-61 chr3 95898572 95898706 + 1.5 NA Intergenic L2c|LINE|L2 -215446 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 259.5-13 chr3 108328045 108328432 + 1.5 NA intron (NM_001282557, intron 1 of 9) L1MEg|LINE|L1 16453 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 180.333-2 chr1 75442765 75442991 + 1.5 NA intron (NM_001320285, intron 2 of 25) intron (NM_001320285, intron 2 of 25) 168236 NM_152697 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 252.667-3 chr10 34685931 34686254 + 1.5 NA intron (NM_001184789, intron 2 of 22) MER124|DNA?|DNA? 129204 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 244-16 chr5 38866425 38866680 + 1.5 NA intron (NM_003999, intron 1 of 17) L1MA4A|LINE|L1 20540 NM_003999 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 313.167-5 chr8 107725007 107725326 + 1.5 NA Intergenic Intergenic -227248 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 291.167 chr1 218052478 218052768 + 1.5 NA intron (NR_110794, intron 3 of 3) AluSc|SINE|Alu 9118 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 332.667-4 chr2 219478273 219478568 + 1.5 NA intron (NM_005876, intron 22 of 40) MIR|SINE|MIR 17608 NM_001173476 10290 Hs.21639 NM_005876 ENSG00000072195 SPEG APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta striated muscle enriched protein kinase protein-coding 478.167 chr2 114597694 114598654 + 1.5 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 136597 NM_001321905 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 173.5-30 chr2 53964271 53964414 + 1.5 NA intron (NM_014614, intron 1 of 46) L1MC1|LINE|L1 6651 NM_014614 23198 Hs.413801 NM_014614 ENSG00000068878 PSME4 PA200 proteasome activator subunit 4 protein-coding 166.334-2 chr2 168459170 168459306 + 1.5 NA intron (NM_001256126, intron 1 of 10) intron (NM_001256126, intron 1 of 10) 2966 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 184.5-46 chr6 144475416 144475597 + 1.5 NA intron (NM_007124, intron 24 of 73) L2a|LINE|L2 69851 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 173-3 chr1 113352433 113352554 + 1.5 NA Intergenic MER44A|DNA|TcMar-Tigger -38022 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 194.667-34 chr2 225682654 225682832 + 1.5 NA intron (NM_001371273, intron 7 of 7) intron (NM_001371273, intron 7 of 7) 281857 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 145.167-17 chr12 21544967 21545105 + 1.5 NA intron (NM_021957, intron 12 of 15) intron (NM_021957, intron 12 of 15) 17111 NR_135188 80763 Hs.130692 NM_030572 ENSG00000134548 SPX C12orf39 spexin hormone protein-coding 328.5-10 chr8 71696304 71696755 + 1.5 NA Intergenic Intergenic -146594 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 158.5-5 chr1 180999895 181000285 + 1.5 NA intron (NM_001286210, intron 1 of 5) intron (NM_001286210, intron 1 of 5) 22780 NM_005819 10228 Hs.518417 NM_005819 ENSG00000135823 STX6 - syntaxin 6 protein-coding 205.5-39 chr7 37634474 37634736 + 1.5 NA Intergenic L1MD1|LINE|L1 -49161 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 325.167-5 chrX 129205789 129206074 + 1.5 NA Intergenic L1PB1|LINE|L1 317559 NM_001282874 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 310.5-17 chr7 32050383 32050811 + 1.5 NA intron (NM_001322059, intron 3 of 17) L1MA9|LINE|L1 19810 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 170-7 chr11 94747833 94748036 + 1.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -7579 NR_135096 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 269-12 chr4 66190047 66190311 + 1.5 NA Intergenic Intergenic -86645 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 276.5-10 chr4 34334246 34334532 + 1.5 NA Intergenic MIR|SINE|MIR -64642 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 166.5-57 chr7 115517815 115518079 + 1.5 NA Intergenic Intergenic 63494 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 217-34 chr8 97473071 97473399 + 1.5 NA Intergenic Intergenic -26738 NR_125390 101927066 Hs.732112 NR_125390 LOC101927066 - uncharacterized LOC101927066 ncRNA 343-4 chr3 152080908 152081265 + 1.5 NA Intergenic THE1D|LTR|ERVL-MaLR 124343 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 168.5-13 chr12 21139472 21139596 + 1.5 NA intron (NM_006446, intron 1 of 14) intron (NM_006446, intron 1 of 14) 8340 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 226.667-13 chr17 52638068 52638277 + 1.5 NA Intergenic Intergenic -223949 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 307.5-10 chr4 64877782 64878116 + 1.5 NA Intergenic Intergenic 126551 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 121.167-91 chr9 28060109 28060331 + 1.5 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -486354 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 156-67 chr5 54126737 54126906 + 1.5 NA intron (NM_019087, intron 3 of 4) intron (NM_019087, intron 3 of 4) -175222 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 192.667-44 chr5 121259283 121259491 + 1.5 NA Intergenic L1PA13|LINE|L1 -63163 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 404 chr5 11696778 11697357 + 1.5 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -108001 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 240.667-34 chr5 89383697 89383922 + 1.5 NA intron (NR_136221, intron 5 of 6) intron (NR_136221, intron 5 of 6) -479704 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 226.333-17 chr2 19898132 19898383 + 1.5 NA intron (NM_001008237, intron 1 of 2) intron (NM_001008237, intron 1 of 2) 3726 NM_001008237 130502 Hs.591547 NM_001008237 ENSG00000183891 TTC32 - tetratricopeptide repeat domain 32 protein-coding 189.834-7 chr21 15592801 15592998 + 1.5 NA Intergenic Intergenic -137035 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 179.667-26 chr2 146400085 146400270 + 1.5 NA Intergenic L1MD|LINE|L1 -186880 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 259.667-16 chr22 22861365 22861786 + 1.5 NA Intergenic L1MA4A|LINE|L1 -24692 NR_049835 100847006 NR_049835 ENSG00000264824 MIR5571 - microRNA 5571 ncRNA 195.833-24 chr5 41388186 41388344 + 1.5 NA intron (NM_001005473, intron 1 of 2) L2b|LINE|L2 122336 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 288.5-13 chr8 133502995 133503298 + 1.5 NA intron (NM_003033, intron 2 of 8) MLT1I|LTR|ERVL-MaLR 68741 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 195-35 chr4 30588022 30588407 + 1.5 NA Intergenic Intergenic -132155 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 230.834-5 chr4 87873538 87873716 + 1.5 NA Intergenic Intergenic 38924 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 115-85 chr8 106995739 106995838 + 1.5 NA Intergenic Intergenic -225544 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 333 chr10 70208034 70208282 + 1.5 NA intron (NM_021129, intron 8 of 10) AluSg|SINE|Alu 25271 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 185-49 chr8 28286458 28286642 + 1.5 NA Intergenic Charlie25|DNA|hAT-Charlie -30718 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 194.167-33 chr6 73787129 73787422 + 1.5 NA exon (NM_133493, exon 21 of 33) exon (NM_133493, exon 21 of 33) 91072 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 221.5-42 chrX 44335872 44336177 + 1.5 NA intron (NM_025184, intron 1 of 14) L1MD|LINE|L1 7648 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 168.5-10 chr11 25994857 25995012 + 1.5 NA Intergenic Intergenic -194189 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 123.667-67 chr3 31561703 31561809 + 1.5 NA intron (NM_178862, intron 1 of 15) L1MA4A|LINE|L1 28831 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 284.834-6 chr20 49876685 49877044 + 1.5 NA intron (NR_048539, intron 9 of 13) intron (NR_048539, intron 9 of 13) 13005 NR_162136 113219455 NR_162136 MIR12122 - microRNA 12122 ncRNA 262.333-6 chr12 88976355 88976651 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 43189 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 132-13 chr10 60838268 60838365 + 1.5 NA Intergenic Arthur1B|DNA|hAT-Tip100 59838 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 160.5-16 chr15 71895057 71895198 + 1.5 NA intron (NM_006901, intron 25 of 41) intron (NM_006901, intron 25 of 41) 84573 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 348.167-3 chr14 68164742 68165112 + 1.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 341335 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 319.5-2 chr2 24518537 24518992 + 1.5 NA intron (NM_001362952, intron 1 of 23) L1ME1|LINE|L1 26887 NM_001362952 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 327.167-3 chr12 7536878 7537298 + 1.5 NA Intergenic L1M1|LINE|L1 -33270 NM_203416 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 230-18 chr20 37330020 37330231 + 1.5 NA Intergenic MIR|SINE|MIR -14560 NM_005417 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 433.166 chr3 140804403 140804786 + 1.5 NA Intergenic L1PB1|LINE|L1 126530 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 306-13 chr4 95816889 95817225 + 1.5 NA Intergenic L2|LINE|L2 -23036 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 288.833-2 chr12 18061996 18062373 + 1.5 NA Intergenic L1MB1|LINE|L1 28009 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 459.5-2 chr16 7035236 7035901 + 1.5 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 261759 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 180.833-37 chr6 35005435 35005614 + 1.5 NA intron (NM_015245, intron 10 of 23) intron (NM_015245, intron 10 of 23) 116269 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 240.5-27 chr9 70628701 70629043 + 1.5 NA intron (NM_001366142, intron 12 of 26) intron (NM_001366142, intron 12 of 26) 181212 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 267.667-4 chr10 58286834 58287103 + 1.5 NA intron (NM_018464, intron 2 of 2) AluSz|SINE|Alu 17806 NM_018464 55847 Hs.370102 NM_018464 ENSG00000122873 CISD1 C10orf70|MDS029|ZCD1|mitoNEET CDGSH iron sulfur domain 1 protein-coding 290.834-4 chr13 100152784 100153135 + 1.5 NA intron (NR_148031, intron 4 of 22) intron (NR_148031, intron 4 of 22) 63866 NR_148030 5095 Hs.80741 NM_000282 ENSG00000175198 PCCA - propionyl-CoA carboxylase subunit alpha protein-coding 190-54 chr6 34911364 34911616 + 1.5 NA intron (NM_015245, intron 1 of 23) intron (NM_015245, intron 1 of 23) 22235 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 381.833-3 chrX 85407917 85408353 + 1.5 NA Intergenic L1MA1|LINE|L1 -28470 NM_001307940 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 238.5-29 chr6 166917417 166917699 + 1.5 NA Intergenic MER65-int|LTR|ERV1 13860 NR_046644 100861523 Hs.634640 NR_046644 RPS6KA2-AS1 - RPS6KA2 antisense RNA 1 ncRNA 162.667-71 chr6 73912355 73912509 + 1.5 NA Intergenic L1M2|LINE|L1 -157019 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 209.167-32 chr6 55488504 55488690 + 1.5 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 90617 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 252-2 chr1 44494473 44494721 + 1.5 NA intron (NM_001319957, intron 1 of 13) L1ME4b|LINE|L1 -50896 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 375.833-3 chr16 83393272 83393687 + 1.5 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -114867 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 253-12 chr2 240116599 240117006 + 1.5 NA Intergenic L1ME3|LINE|L1 19503 NM_001163424 150678 Hs.293884 NM_138336 ENSG00000172428 COPS9 CSNAP|MYEOV2 COP9 signalosome subunit 9 protein-coding 300.5-13 chr5 130801860 130802340 + 1.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 363156 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 309-3 chr14 41301394 41301764 + 1.5 NA Intergenic Intergenic -305277 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 210.667 chr1 75151698 75151888 + 1.5 NA intron (NM_001001933, intron 8 of 9) intron (NM_001001933, intron 8 of 9) 17405 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 169-6 chr10 80896241 80896416 + 1.5 NA Intergenic Intergenic 246531 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 334.667-8 chr7 48598787 48599265 + 1.5 NA intron (NM_152701, intron 58 of 61) L1MB8|LINE|L1 -325521 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 203.167-5 chr10 81975011 81975228 + 1.5 NA intron (NR_163253, intron 2 of 10) A-rich|Low_complexity|Low_complexity 97432 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 138.167-55 chr3 150865221 150865391 + 1.5 NA Intergenic Intergenic 40133 NM_001351281 646951 Hs.380222 NM_001351281 MINDY4B C3orf76|FAM188B2 MINDY family member 4B protein-coding 246.5-22 chr8 5843221 5843707 + 1.5 NA Intergenic L1ME2|LINE|L1 563084 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 258.833-15 chr5 45024048 45024408 + 1.5 NA Intergenic MER21B|LTR|ERVL 215281 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 264.5-13 chr5 22658543 22658770 + 1.5 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 194688 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 349.833-6 chr5 82524995 82525365 + 1.5 NA Intergenic Intergenic 245718 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 285.333-17 chr9 85470641 85471041 + 1.5 NA Intergenic Kanga1c|DNA|TcMar-Tc2 271188 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 241.667-33 chr5 159044915 159045233 + 1.5 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 52882 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 363-2 chr16 3896405 3896706 + 1.5 NA Intergenic AluSc8|SINE|Alu -15842 NM_004380 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 229-7 chr11 114478308 114478538 + 1.5 NA Intergenic MER67C|LTR|ERV1 38956 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 273-12 chr5 112243942 112244263 + 1.5 NA intron (NM_001347887, intron 9 of 23) Tigger1|DNA|TcMar-Tigger 15819 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 212.167 chr1 24851969 24852220 + 1.5 NA Intergenic Intergenic 67322 NR_106789 102465437 NR_106789 ENSG00000278034 MIR6731 hsa-mir-6731 microRNA 6731 ncRNA 311.5-10 chr22 47226751 47227232 + 1.5 NA Intergenic Intergenic -118580 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 335.667-2 chr14 63561614 63561929 + 1.5 NA Intergenic Intergenic -18376 NM_001354926 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 314.333-5 chr8 81856103 81856434 + 1.5 NA Intergenic L2c|LINE|L2 -13982 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 292.5-2 chr1 96258682 96259105 + 1.5 NA intron (NR_110693, intron 5 of 5) intron (NR_110693, intron 5 of 5) 115232 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 216.5-6 chr13 103296410 103296680 + 1.5 NA Intergenic Intergenic -128655 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 305.667-2 chr1 191364470 191364673 + 1.5 NA Intergenic Intergenic -136073 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 348.334-3 chr16 23404242 23404511 + 1.5 NA intron (NM_153603, intron 12 of 16) intron (NM_153603, intron 12 of 16) 48813 NM_153603 91949 Hs.185807 NM_153603 ENSG00000168434 COG7 CDG2E component of oligomeric golgi complex 7 protein-coding 206.5-16 chr2 97814560 97814804 + 1.5 NA intron (NM_015348, intron 13 of 40) intron (NM_015348, intron 13 of 40) 80276 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 220-16 chr21 39323673 39323859 + 1.5 NA TTS (NR_046655) TTS (NR_046655) 8059 NR_046655 100874093 Hs.588102 NR_046655 ENSG00000238141 BRWD1-AS1 - BRWD1 antisense RNA 1 ncRNA 235.5-13 chr15 91592200 91592396 + 1.5 NA Intergenic L1ME2z|LINE|L1 128959 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 324.167-2 chr22 25916640 25917155 + 1.5 NA intron (NM_001318245, intron 33 of 43) AluSx1|SINE|Alu 174709 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 372-4 chr4 130258141 130258451 + 1.5 NA Intergenic Intergenic -118065 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 281.333-14 chr8 119743883 119744128 + 1.5 NA intron (NM_003184, intron 24 of 25) intron (NM_003184, intron 24 of 25) -70615 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 399.167 chr6 141596239 141596536 + 1.5 NA Intergenic L1ME1|LINE|L1 492412 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 172.833-20 chr15 57787724 57787902 + 1.5 NA Intergenic Intergenic 81099 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 216-29 chr6 141496008 141496280 + 1.5 NA Intergenic L1MD3|LINE|L1 592655 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 190.833-3 chr1 201722104 201722336 + 1.5 NA intron (NM_020443, intron 3 of 29) L1MB4|LINE|L1 2712 NR_049823 100847050 NR_049823 ENSG00000264802 MIR5191 - microRNA 5191 ncRNA 317.167-10 chr4 2612839 2613300 + 1.5 NA intron (NM_001366316, intron 2 of 20) L1M5|LINE|L1 -12363 NM_001256667 8603 Hs.652364 NM_003704 ENSG00000125386 FAM193A C4orf8|RES4-22 family with sequence similarity 193 member A protein-coding 309.5-4 chr2 160358655 160358863 + 1.5 NA intron (NM_002897, intron 2 of 13) intron (NM_002897, intron 2 of 13) 49123 NR_039946 100616364 NR_039946 ENSG00000283734 MIR4785 mir-4785 microRNA 4785 ncRNA 235.5 chr1 114212225 114212419 + 1.5 NA Intergenic L2c|LINE|L2 -58453 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 181-18 chr12 106498938 106499142 + 1.5 NA intron (NM_001160708, intron 25 of 27) intron (NM_001160708, intron 25 of 27) -83867 NM_213594 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 134.833 chr1 48251080 48251256 + 1.5 NA Intergenic Intergenic 28452 NM_001135181 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 336.166 chr5 106089011 106089312 + 1.5 NA Intergenic L2a|LINE|L2 921853 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 205.833-6 chr11 10225021 10225193 + 1.5 NA intron (NM_030962, intron 1 of 39) intron (NM_030962, intron 1 of 39) 69100 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 284.166-3 chr6 124223667 124223869 + 1.5 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -59237 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 304.333-6 chr2 129443892 129444247 + 1.5 NA Intergenic Intergenic -170178 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 179.333-48 chr6 27821288 27821511 + 1.5 NA Intergenic Intergenic -2726 NM_021968 8363 Hs.278483 NM_021968 ENSG00000197238 HIST1H4J H4/e|H4F2iv|H4FE|dJ160A22.2 histone cluster 1 H4 family member j protein-coding 228.5-16 chr22 47179296 47179478 + 1.5 NA Intergenic AluY|SINE|Alu -166184 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 252.5-24 chr8 63163647 63163864 + 1.5 NA Intergenic Intergenic 4687 NR_102684 101410533 Hs.163027 NR_102684 ENSG00000270673 YTHDF3-AS1 - YTHDF3 antisense RNA 1 (head to head) ncRNA 451.667-2 chr5 84852421 84853173 + 1.5 NA Intergenic Intergenic -467917 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 283 chr1 209964990 209965489 + 1.5 NA intron (NM_001256006, intron 3 of 8) L1PA17|LINE|L1 27022 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 549.333 chr7 18457797 18458367 + 1.5 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) -37628 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 155-81 chr9 94126756 94126897 + 1.5 NA Intergenic HAL1M8|LINE|L1 42362 NM_001253829 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 283.5-3 chr10 131048435 131048715 + 1.5 NA Intergenic Intergenic -46643 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 128.5-21 chr14 22165820 22165967 + 1.5 NA Intergenic Intergenic 266860 NR_148363 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 250-15 chr3 4774451 4774694 + 1.5 NA intron (NM_001168272, intron 45 of 60) intron (NM_001168272, intron 45 of 60) -22982 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 225.5-43 chr6 132950915 132951190 + 1.5 NA Intergenic MER8|DNA|TcMar-Tigger 133833 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 414-2 chr15 65697581 65697939 + 1.5 NA promoter-TSS (NR_145750) promoter-TSS (NR_145750) -824 NR_145750 109617020 NR_145750 ENSG00000238311 SNORD13E - small nucleolar RNA, C/D box 13E snoRNA 431.5 chr22 26757499 26758109 + 1.5 NA intron (NR_110543, intron 2 of 5) L1MB7|LINE|L1 84961 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 228-21 chr2 241617017 241617239 + 1.5 NA intron (NM_015963, intron 2 of 5) L1ME2|LINE|L1 373 NM_001164356 51078 Hs.435759 NM_015963 ENSG00000176946 THAP4 CGI-36|Nb(III)|PP238 THAP domain containing 4 protein-coding 272.167-14 chr14 103350465 103350821 + 1.5 NA Intergenic L1ME4b|LINE|L1 12794 NR_002964 677811 Hs.658237 NR_002964 ENSG00000272533 SNORA28 ACA28 small nucleolar RNA, H/ACA box 28 snoRNA 238-17 chr3 35932202 35932412 + 1.5 NA Intergenic Intergenic 187831 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 249.667-4 chr10 28121483 28122073 + 1.5 NA intron (NR_134518, intron 7 of 16) intron (NR_134518, intron 7 of 16) -48400 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 313.5-2 chr13 91323599 91323931 + 1.5 NA Intergenic MIR|SINE|MIR -24055 NR_027350 407975 Hs.24115 NR_027349 ENSG00000215417 MIR17HG C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92 miR-17-92a-1 cluster host gene ncRNA 296.167-12 chr9 82426550 82427141 + 1.5 NA Intergenic Intergenic 438073 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 317.167-2 chr10 74109031 74109494 + 1.5 NA intron (NM_003373, intron 18 of 20) intron (NM_003373, intron 18 of 20) 41566 NM_001320265 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 186.834 chr12 41682921 41683132 + 1.5 NA Intergenic Intergenic -81163 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 121.833-28 chr19 31464175 31464268 + 1.5 NA Intergenic L1MD|LINE|L1 -114785 NM_020856 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 310.5-10 chr22 34392051 34392275 + 1.5 NA Intergenic L2c|LINE|L2 -469275 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 272.167-8 chr13 51549573 51549955 + 1.5 NA Intergenic MLT1A|LTR|ERVL-MaLR -2825 NR_039852 100616423 NR_039852 ENSG00000266611 MIR4703 - microRNA 4703 ncRNA 180.167-5 chr10 52255519 52255784 + 1.5 NA intron (NM_001098512, intron 10 of 17) L2c|LINE|L2 58477 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 221-25 chr6 28265466 28265672 + 1.5 NA Intergenic Intergenic -1441 NM_001023560 7741 Hs.157883 NM_007151 ENSG00000197062 ZSCAN26 SRE-ZBP|SREZBP|ZNF187 zinc finger and SCAN domain containing 26 protein-coding 300.166 chr3 103738551 103738795 + 1.5 NA Intergenic Intergenic -214557 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 195.167-14 chr2 44487954 44488159 + 1.5 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 126109 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 229.5-18 chr3 97150923 97151130 + 1.5 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -288581 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 241.833-5 chr11 12924781 12924994 + 1.5 NA intron (NM_021961, intron 10 of 12) intron (NM_021961, intron 10 of 12) 64661 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 372.501 chr6 142241962 142242422 + 1.5 NA Intergenic Intergenic -59727 NM_001032394 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 339-2 chr10 74378433 74378762 + 1.5 NA intron (NM_001369124, intron 4 of 9) intron (NM_001369124, intron 4 of 9) 150727 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 292.167-9 chr7 4675323 4675657 + 1.5 NA Intergenic AluSx|SINE|Alu -6805 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 457.001 chr1 92097196 92097716 + 1.5 NA intron (NM_183242, intron 2 of 8) L1MB7|LINE|L1 17111 NM_183242 284697 Hs.676102 NM_183242 ENSG00000189195 BTBD8 - BTB domain containing 8 protein-coding 236.833-6 chr18 9908001 9908319 + 1.5 NA Intergenic Charlie13a|DNA|hAT-Charlie -5856 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 342.833 chr10 64267705 64268028 + 1.5 NA Intergenic MIRb|SINE|MIR -557662 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 214.167-16 chr22 48296029 48296221 + 1.5 NA Intergenic L1MCa|LINE|L1 21761 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 230-9 chr14 67991648 67991909 + 1.5 NA intron (NM_133509, intron 7 of 10) L1M1|LINE|L1 168186 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 136.333-104 chrX 95037849 95037988 + 1.5 NA Intergenic L1MB1|LINE|L1 25308 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 278.833-6 chr5 3295100 3295424 + 1.5 NA Intergenic ERVL-B4-int|LTR|ERVL 117427 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 258.167-19 chr8 131484285 131484578 + 1.5 NA Intergenic Intergenic -419662 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 363-3 chr17 53806045 53806441 + 1.5 NA Intergenic Intergenic -16684 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 297.833 chr1 236122546 236122768 + 1.5 NA Intergenic Intergenic -19882 NM_003272 7107 Hs.498160 NM_003272 ENSG00000077585 GPR137B TM7SF1 G protein-coupled receptor 137B protein-coding 174.5-48 chr7 39565877 39566068 + 1.5 NA promoter-TSS (NM_020192) promoter-TSS (NM_020192) -432 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 441.5 chr15 80851816 80852230 + 1.5 NA intron (NM_018689, intron 1 of 28) intron (NM_018689, intron 1 of 28) -9950 NR_030393 693132 NR_030393 ENSG00000208003 MIR549A MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a microRNA 549a ncRNA 364.667-2 chr5 86090054 86090422 + 1.5 NA Intergenic HAL1ME|LINE|L1 -192206 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 201.167-25 chr5 123352203 123352381 + 1.5 NA intron (NM_153223, intron 19 of 20) L1ME3A|LINE|L1 71300 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 366.5-2 chr16 53751089 53751524 + 1.5 NA intron (NM_001363897, intron 1 of 7) AluY|SINE|Alu 47150 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 378-2 chr14 62332990 62333386 + 1.5 NA Intergenic L1MEc|LINE|L1 -193215 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 304-5 chr4 105757496 105757786 + 1.5 NA intron (NM_001370181, intron 5 of 11) intron (NM_001370181, intron 5 of 11) 46828 NM_001031720 79807 Hs.161429 NM_024751 ENSG00000138780 GSTCD - glutathione S-transferase C-terminal domain containing protein-coding 371.167-5 chr4 43013045 43013419 + 1.5 NA intron (NM_001080476, intron 2 of 3) L1PA8A|LINE|L1 119966 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 329.5-10 chr21 19898327 19898628 + 1.5 NA intron (NR_146910, intron 1 of 2) L2a|LINE|L2 1278 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 594.167 chr10 90020631 90021355 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -63620 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 192-43 chr6 146552158 146552397 + 1.5 NA intron (NM_006834, intron 2 of 2) intron (NM_006834, intron 2 of 2) 8444 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 188.5-2 chr1 21015940 21016140 + 1.5 NA intron (NM_003760, intron 2 of 31) L1M4|LINE|L1 -27608 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 314-12 chr6 146528884 146529184 + 1.5 NA Intergenic Intergenic -14799 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 298.5-2 chr10 42621780 42622082 + 1.5 NA intron (NM_001305040, intron 4 of 6) L1MB4|LINE|L1 16639 NM_001305040 7582 Hs.435774 NM_006955 ENSG00000196693 ZNF33B KOX2|KOX31|ZNF11B zinc finger protein 33B protein-coding 301-4 chr5 10400440 10400907 + 1.5 NA intron (NM_001270660, intron 9 of 24) L1MC5a|LINE|L1 -1691 NR_162106 113218502 NR_162106 MIR10397 - microRNA 10397 ncRNA 391.667-2 chr16 82859751 82860227 + 1.5 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) 86670 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 308.667-9 chr8 121019708 121020178 + 1.5 NA Intergenic Intergenic -207897 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 254.5-18 chr7 90480403 90480653 + 1.5 NA intron (NM_001365443, intron 2 of 6) L1MC5|LINE|L1 10889 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 143.166-2 chr6 53610276 53610506 + 1.5 NA Intergenic Intergenic -17989 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 197.833-32 chr6 55526519 55526718 + 1.5 NA intron (NM_001287746, intron 4 of 9) intron (NM_001287746, intron 4 of 9) 52596 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 115.5-62 chr3 34234987 34235147 + 1.5 NA Intergenic L1MC5a|LINE|L1 436437 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 123.5-85 chr8 126019415 126019558 + 1.5 NA Intergenic L2a|LINE|L2 -68289 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 237.834-3 chr5 101629869 101630200 + 1.5 NA Intergenic Intergenic 666250 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 204.5-13 chr13 57137009 57137200 + 1.5 NA Intergenic Intergenic -3814 NM_001130404 729233 Hs.723090 NM_001130404 ENSG00000204918 PRR20B PRR20|PRR20A|PRR20C|PRR20D|PRR20E proline rich 20B protein-coding 367.333-3 chr5 30645892 30646313 + 1.5 NA Intergenic Intergenic -547584 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 346.167-4 chr8 81781943 81782205 + 1.5 NA Intergenic Intergenic 49626 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 407.333 chr12 30002783 30003481 + 1.5 NA Intergenic MER115|DNA|hAT-Tip100 -218373 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 149.834-7 chr5 171193462 171193692 + 1.5 NA intron (NM_022897, intron 18 of 27) MLT1D|LTR|ERVL-MaLR -115671 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 348-7 chr3 139426894 139427344 + 1.5 NA intron (NR_121609, intron 3 of 4) (TTATAG)n|Simple_repeat|Simple_repeat 37316 NR_121609 100507291 Hs.97661 NR_121608 ENSG00000248932 LOC100507291 - uncharacterized LOC100507291 ncRNA 124.167-48 chr2 135104316 135104440 + 1.5 NA intron (NM_001172435, intron 5 of 24) L1M4a1|LINE|L1 -32250 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 296.167-6 chr2 232412757 232413217 + 1.5 NA Intergenic Charlie7|DNA|hAT-Charlie 6143 NM_031313 251 Hs.333509 NM_031313 ENSG00000163286 ALPG ALPPL|ALPPL2|GCAP alkaline phosphatase, germ cell protein-coding 265.5-5 chr15 72133059 72133422 + 1.5 NA intron (NM_145204, intron 1 of 1) intron (NM_145204, intron 1 of 1) 14837 NM_145204 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 314.5-6 chr11 74421387 74421690 + 1.5 NA Intergenic L1ME5|LINE|L1 22301 NR_039710 100616215 NR_039710 ENSG00000264402 MIR548AL - microRNA 548al ncRNA 315.833-4 chr4 75860837 75861237 + 1.5 NA intron (NM_006239, intron 16 of 16) intron (NM_006239, intron 16 of 16) 41415 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 405 chr16 7107188 7107494 + 1.5 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -225504 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 160.333-17 chr15 33389726 33389919 + 1.5 NA intron (NM_001243996, intron 1 of 102) intron (NM_001243996, intron 1 of 102) 78855 NM_001036 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 308.5-11 chr6 2424978 2425340 + 1.5 NA Intergenic L1MB3|LINE|L1 179406 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 394.667-3 chr4 178328881 178329293 + 1.5 NA Intergenic Intergenic -421151 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 199.5-48 chr8 123113027 123113309 + 1.5 NA intron (NM_001363156, intron 9 of 19) intron (NM_001363156, intron 9 of 19) 39919 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 223.333-27 chr4 48678769 48678988 + 1.5 NA intron (NM_015030, intron 3 of 63) intron (NM_015030, intron 3 of 63) 101421 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 227.833-7 chr2 61944484 61944690 + 1.5 NA intron (NM_152516, intron 1 of 2) MER4-int|LTR|ERV1 38945 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 355.5-3 chr18 72297937 72298336 + 1.5 NA Intergenic Intergenic 246206 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 363.834-2 chr14 42300781 42301298 + 1.5 NA Intergenic Intergenic 694183 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 281-6 chr15 24777538 24777878 + 1.5 NA Intergenic L1MC3|LINE|L1 -45900 NM_022808 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 324.5-5 chr5 24201906 24202190 + 1.5 NA Intergenic L1PA13|LINE|L1 250700 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 257.5-8 chr18 77414804 77415162 + 1.5 NA Intergenic Intergenic 165135 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 217-12 chr2 37296088 37296307 + 1.5 NA intron (NM_005813, intron 1 of 17) intron (NM_005813, intron 1 of 17) 20887 NM_005813 23683 Hs.660757 NM_005813 ENSG00000115825 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 349.833-4 chr19 32398425 32398806 + 1.5 NA intron (NR_046201, intron 2 of 2) (AATA)n|Simple_repeat|Simple_repeat 6924 NR_046201 400684 Hs.438766 NR_046201 ENSG00000267213 LOC400684 - uncharacterized LOC400684 ncRNA 245.5-26 chr7 42869117 42869443 + 1.5 NA Intergenic Intergenic 42563 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 249.333-10 chr17 32603932 32604522 + 1.5 NA intron (NM_001303279, intron 21 of 21) intron (NM_001303279, intron 21 of 21) 117234 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 475.666 chr11 113931025 113931490 + 1.5 NA intron (NM_006028, intron 2 of 8) intron (NM_006028, intron 2 of 8) 22416 NM_001363563 9177 Hs.241377 NM_006028 ENSG00000149305 HTR3B 5-HT3B 5-hydroxytryptamine receptor 3B protein-coding 311.833-4 chr6 147244165 147244379 + 1.5 NA intron (NM_139244, intron 4 of 25) MER2|DNA|TcMar-Tigger -39658 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 391.333-5 chr5 114822271 114822733 + 1.5 NA Intergenic Intergenic -49089 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 306-12 chr21 30784181 30784511 + 1.5 NA Intergenic L1M3c|LINE|L1 -28918 NM_181619 337977 Hs.567837 NM_181619 ENSG00000187005 KRTAP21-1 KAP21.1 keratin associated protein 21-1 protein-coding 291-12 chr4 96319193 96319432 + 1.5 NA intron (NR_147149, intron 1 of 3) AluSq2|SINE|Alu 8609 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 215.5-41 chr8 115938038 115938331 + 1.5 NA Intergenic L1M1|LINE|L1 -269209 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 478 chr3 120069077 120069638 + 1.5 NA intron (NM_002093, intron 1 of 11) intron (NM_002093, intron 1 of 11) 15291 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 228-19 chr2 71901262 71901591 + 1.5 NA Intergenic MLT1F1|LTR|ERVL-MaLR 246436 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 181.167-36 chr8 135046487 135046684 + 1.5 NA Intergenic Charlie4a|DNA|hAT-Charlie -187546 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 241.333-6 chr11 10529485 10529902 + 1.5 NA intron (NM_016422, intron 3 of 5) L2c|LINE|L2 11494 NM_016422 50862 Hs.44685 NM_016422 ENSG00000110315 RNF141 RFP141|ZFP26|ZNF230 ring finger protein 141 protein-coding 265.5-2 chr10 72748480 72748796 + 1.5 NA intron (NR_073062, intron 3 of 9) AluJo|SINE|Alu 27609 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 231.833 chr1 221522838 221523158 + 1.5 NA Intergenic MER58C|DNA|hAT-Charlie -186702 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 319.5-5 chr4 44089009 44089387 + 1.5 NA Intergenic Intergenic 72136 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 328.5-9 chr5 125480473 125480745 + 1.5 NA Intergenic Intergenic -12652 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 348.5 chr1 179308416 179308869 + 1.5 NA intron (NM_001252511, intron 2 of 14) AluSx1|SINE|Alu 14845 NR_045530 6646 Hs.445588 NM_003101 ENSG00000057252 SOAT1 ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT sterol O-acyltransferase 1 protein-coding 280.667-26 chr8 124607141 124607499 + 1.5 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 68197 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 301.167 chr1 99687347 99687609 + 1.5 NA intron (NM_017734, intron 6 of 7) intron (NM_017734, intron 6 of 7) 25475 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 311.5-5 chr14 59371607 59372208 + 1.5 NA TTS (NM_014992) TTS (NM_014992) 93473 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 459-2 chr6 137638859 137639483 + 1.5 NA Intergenic Intergenic -26475 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 230.334-2 chr11 55468200 55468563 + 1.5 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -85888 NM_001001920 81309 NM_001001920 ENSG00000181939 OR4C15 OR11-127|OR11-134 olfactory receptor family 4 subfamily C member 15 protein-coding 225-19 chr2 84375435 84375822 + 1.5 NA Intergenic Intergenic 83652 NM_003849 8802 Hs.270428 NM_003849 ENSG00000163541 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase alpha subunit protein-coding 290.833-5 chr7 20638047 20638315 + 1.5 NA intron (NM_001163941, intron 5 of 27) L1ME4a|LINE|L1 -9149 NM_001163942 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 260.5-10 chr18 31704886 31705276 + 1.5 NA Intergenic Intergenic -20336 NM_004775 9331 Hs.591063 NM_004775 ENSG00000118276 B4GALT6 B4Gal-T6|beta4Gal-T6 beta-1,4-galactosyltransferase 6 protein-coding 235-25 chr5 20360685 20360848 + 1.5 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 55215 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 197-35 chr3 191199974 191200179 + 1.5 NA intron (NM_198184, intron 1 of 4) intron (NM_198184, intron 1 of 4) 835 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 546.5 chr12 10255624 10256352 + 1.5 NA intron (NM_001351060, intron 2 of 8) L1M4|LINE|L1 17027 NM_001351060 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 217.5-14 chr15 95454266 95454678 + 1.5 NA intron (NR_027133, intron 3 of 5) intron (NR_027133, intron 3 of 5) 21379 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 187.5-5 chr10 85161013 85161189 + 1.5 NA Intergenic L1ME3C|LINE|L1 37804 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 284.667-5 chr13 99685172 99685500 + 1.5 NA intron (NR_104592, intron 1 of 9) intron (NR_104592, intron 1 of 9) 5635 NR_046526 100874063 Hs.577064 NR_046526 ENSG00000227659 CLYBL-AS2 - CLYBL antisense RNA 2 ncRNA 253.5-2 chr1 167313641 167313889 + 1.5 NA intron (NR_037163, intron 2 of 16) L1MD2|LINE|L1 -15305 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 222.167-27 chr4 35449833 35450288 + 1.5 NA Intergenic L1MC|LINE|L1 793879 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 149.334 chr10 9744021 9744190 + 1.5 NA Intergenic L1MC3|LINE|L1 -314617 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 393 chr1 107007997 107008424 + 1.5 NA Intergenic MER47A|DNA|TcMar-Tigger -48464 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 287.667-10 chr4 106046604 106046873 + 1.5 NA intron (NM_001290768, intron 26 of 26) intron (NM_001290768, intron 26 of 26) -24260 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 270.333-5 chr3 17235936 17236124 + 1.5 NA intron (NM_001349086, intron 15 of 20) intron (NM_001349086, intron 15 of 20) 302834 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 173-4 chr1 172122153 172122287 + 1.5 NA intron (NR_146559, intron 14 of 20) intron (NR_146559, intron 14 of 20) -16588 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 343.5-6 chr21 26802533 26802929 + 1.5 NA Intergenic AluSz|SINE|Alu 42678 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 215.167-32 chr8 134647780 134648015 + 1.5 NA intron (NM_020863, intron 2 of 15) L1M3|LINE|L1 48658 NM_001029939 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 350.667-4 chr15 47378852 47379231 + 1.5 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 194952 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 282.333-8 chr17 67394229 67394561 + 1.5 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) 17114 NM_012417 26207 Hs.591185 NM_012417 ENSG00000154217 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein cytoplasmic 1 protein-coding 323-2 chr18 44015352 44015701 + 1.5 NA Intergenic L1MEd|LINE|L1 516171 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 385.001 chr1 172131494 172131818 + 1.5 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -7152 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 385.833-2 chr4 49634231 49635041 + 1.5 NA Intergenic (GAATG)n|Satellite|Satellite 647994 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 426-3 chr18 3991679 3992195 + 1.5 NA intron (NR_102696, intron 1 of 4) intron (NR_102696, intron 1 of 4) 29584 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 344 chr10 53209613 53209938 + 1.5 NA Intergenic Intergenic -438075 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 399.333-2 chr6 35034528 35034924 + 1.5 NA intron (NM_015245, intron 11 of 23) intron (NM_015245, intron 11 of 23) 106613 NM_001366330 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 221.833-18 chr4 34108804 34109006 + 1.5 NA Intergenic Intergenic -69012 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 407.168 chr2 61603437 61603852 + 1.5 NA Intergenic Intergenic -65288 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 313 chr1 72841226 72841579 + 1.5 NA Intergenic L1PB1|LINE|L1 -464768 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 167.333-11 chr10 77695475 77695675 + 1.5 NA Intergenic Charlie2b|DNA|hAT-Charlie -57767 NM_001161352 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 411.501 chr1 199981777 199982121 + 1.5 NA Intergenic Intergenic -45761 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 137-51 chr2 5028106 5028224 + 1.5 NA Intergenic Intergenic -371943 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 367.667-3 chr5 37999939 38000573 + 1.5 NA Intergenic Intergenic -25441 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 249.5-26 chr5 23398298 23398496 + 1.5 NA Intergenic MER31-int|LTR|ERV1 -109212 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 241-2 chr1 43496401 43496653 + 1.5 NA Intergenic L1ME4a|LINE|L1 -29510 NM_001329137 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 177.833-46 chr8 68168180 68168350 + 1.5 NA intron (NM_024870, intron 35 of 39) intron (NM_024870, intron 35 of 39) -162108 NM_001349478 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 462.167 chr21 27568716 27569155 + 1.5 NA Intergenic Intergenic -153444 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 220.667-25 chr4 43157959 43158324 + 1.5 NA Intergenic L1PA15|LINE|L1 264875 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 284.333-3 chr2 107996963 107997247 + 1.5 NA intron (NM_021815, intron 4 of 8) Charlie22a|DNA|hAT-Charlie 10581 NM_001305005 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 339.167-4 chr22 28400645 28400884 + 1.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -59105 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 233.167-3 chr1 114641335 114641515 + 1.5 NA intron (NM_198459, intron 1 of 17) MSTB|LTR|ERVL-MaLR 28624 NM_198459 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 176.5-4 chr1 242648504 242648642 + 1.5 NA Intergenic Intergenic -123876 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 165.167-49 chr6 104796597 104796758 + 1.5 NA exon (NM_001350559, exon 7 of 22) exon (NM_001350559, exon 7 of 22) 62869 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 133.667-96 chr8 119619766 119619879 + 1.5 NA intron (NM_001330600, intron 4 of 25) intron (NM_001330600, intron 4 of 25) 19017 NM_006209 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 230.5-23 chr7 114263713 114263917 + 1.5 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) -151000 NM_014491 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 139.833-6 chr10 83280069 83280211 + 1.5 NA Intergenic L1MEf|LINE|L1 396949 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 247-4 chr10 105256424 105256626 + 1.5 NA intron (NM_014978, intron 24 of 26) intron (NM_014978, intron 24 of 26) 563808 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 285.833-6 chr3 169739243 169739716 + 1.5 NA Intergenic Intergenic 25581 NR_001566 7012 Hs.436182 NR_001566 ENSG00000277925 TERC DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR telomerase RNA component ncRNA 338.667-7 chr8 137893016 137893462 + 1.5 NA intron (NR_161374, intron 2 of 7) MLT1G1-int|LTR|ERVL-MaLR 190306 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 395.833-2 chr12 34501036 34501394 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 478719 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 316.667-8 chr2 117380423 117380868 + 1.5 NA Intergenic MIR|SINE|MIR -434046 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 228.333-18 chr3 159180294 159180664 + 1.5 NA intron (NM_001197113, intron 1 of 10) intron (NM_001197113, intron 1 of 10) -92768 NM_001197108 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 143-51 chr3 189316768 189316880 + 1.5 NA intron (NM_198485, intron 5 of 5) intron (NM_198485, intron 5 of 5) -76230 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 289-9 chr3 109713474 109713700 + 1.5 NA Intergenic Intergenic 110759 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 442.5 chr15 26503531 26503919 + 1.5 NA Intergenic Intergenic 125365 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 267.5-16 chr9 71536440 71536722 + 1.5 NA Intergenic Intergenic -89610 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 234.667-26 chr5 43890369 43890619 + 1.5 NA Intergenic Intergenic -287264 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 234.667-25 chr5 32197083 32197330 + 1.5 NA Intergenic Intergenic -22887 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 340.167-3 chr2 138051691 138052047 + 1.5 NA Intergenic MIR|SINE|MIR -50015 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 343.667-5 chr4 70451788 70452107 + 1.5 NA intron (NM_001145006, intron 1 of 3) L1M1|LINE|L1 -20011 NM_001145007 4589 Hs.631946 NM_152291 ENSG00000171195 MUC7 MG2 mucin 7, secreted protein-coding 349.166 chr9 14382814 14383326 + 1.5 NA intron (NM_001369458, intron 1 of 11) intron (NM_001369458, intron 1 of 11) 15913 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 300.333-16 chr5 93477101 93477422 + 1.5 NA intron (NR_021491, intron 4 of 5) intron (NR_021491, intron 4 of 5) 94082 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 230.5-17 chr6 138943904 138944138 + 1.5 NA intron (NM_031922, intron 5 of 19) intron (NM_031922, intron 5 of 19) 44240 NM_031922 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 229.5-7 chr10 107942533 107942884 + 1.5 NA intron (NR_125760, intron 4 of 4) MIRb|SINE|MIR 126585 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 216.167-32 chr9 38177485 38177727 + 1.5 NA Intergenic Intergenic -108379 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 371.333-6 chr8 87587312 87587568 + 1.5 NA Intergenic Intergenic 286575 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 257.5-9 chr2 22668720 22668963 + 1.5 NA Intergenic Intergenic 132362 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 262.166 chr3 108045274 108045514 + 1.5 NA 3' UTR (NM_001777, exon 11 of 11) 3' UTR (NM_001777, exon 11 of 11) 45694 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 159-55 chr4 79796030 79796235 + 1.5 NA Intergenic Intergenic -31339 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 313.5-8 chr4 56661899 56662262 + 1.5 NA intron (NM_032495, intron 1 of 3) intron (NM_032495, intron 1 of 3) -5558 NM_139211 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 464.333 chr12 30555086 30555564 + 1.5 NA Intergenic L1PA13|LINE|L1 121919 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 323.5-2 chr20 18945225 18945553 + 1.5 NA Intergenic Intergenic -115186 NR_161342 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 360-3 chr14 28158921 28159195 + 1.5 NA Intergenic Intergenic -485837 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 155-69 chr6 83253226 83253379 + 1.5 NA intron (NM_002395, intron 7 of 13) intron (NM_002395, intron 7 of 13) -59402 NM_001199917 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 332.5-5 chr19 52325431 52325812 + 1.5 NA 3' UTR (NM_001297624, exon 4 of 4) 3' UTR (NM_001297624, exon 4 of 4) -10622 NM_001161425 162963 Hs.147025 NM_173530 ENSG00000167554 ZNF610 - zinc finger protein 610 protein-coding 319.333-4 chr11 77579124 77579380 + 1.5 NA Intergenic MER4-int|LTR|ERV1 8163 NR_130930 646029 Hs.609654 NM_001039908 LOC646029 - uncharacterized LOC646029 ncRNA 285.5-7 chr16 27387325 27387651 + 1.5 NA Intergenic AluJb|SINE|Alu -14686 NM_181079 50615 Hs.210546 NM_021798 ENSG00000103522 IL21R CD360|IMD56|NILR interleukin 21 receptor protein-coding 206.5-10 chr15 71059348 71059610 + 1.5 NA Intergenic L1ME2|LINE|L1 -81970 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 464.5-2 chr5 8981933 8982451 + 1.5 NA Intergenic L1ME4a|LINE|L1 71703 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 180-49 chr6 131719541 131719716 + 1.5 NA intron (NR_133007, intron 16 of 23) intron (NR_133007, intron 16 of 23) -8611 NM_001145659 643854 Hs.632613 NM_001145659 ENSG00000236761 CTAGE9 - CTAGE family member 9 protein-coding 355-11 chr6 154241440 154241830 + 1.5 NA intron (NM_015553, intron 5 of 11) intron (NM_015553, intron 5 of 11) 88446 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 299-11 chr4 167242347 167242640 + 1.5 NA Intergenic L1MDa|LINE|L1 -7903 NM_001251967 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 255.833-2 chr10 33973808 33974010 + 1.5 NA Intergenic MIRc|SINE|MIR -201229 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 185.667-28 chr20 45035306 45035534 + 1.5 NA intron (NM_006282, intron 10 of 10) intron (NM_006282, intron 10 of 10) 65707 NM_002251 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 213.5-11 chr18 63247635 63247863 + 1.5 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 71631 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 328-14 chr7 91766303 91766682 + 1.5 NA Intergenic L1MA5|LINE|L1 114210 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 219-22 chr5 19349810 19350025 + 1.5 NA Intergenic Intergenic 536355 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 378.833-3 chr18 51404835 51405552 + 1.5 NA intron (NR_040074, intron 1 of 2) intron (NR_040074, intron 1 of 2) 13151 NR_040075 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 275.333-5 chr10 60977885 60978285 + 1.5 NA intron (NM_001350906, intron 2 of 12) MIRc|SINE|MIR 22912 NM_001350908 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 185.667-27 chr2 209958328 209958609 + 1.5 NA intron (NM_032504, intron 48 of 63) Tigger19b|DNA|TcMar-Tigger -44097 NM_001278286 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 233.666-7 chr5 60346114 60346347 + 1.5 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 26433 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 188.833-31 chr5 107435414 107435768 + 1.5 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 235346 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 216.667-27 chr22 26928523 26928772 + 1.5 NA Intergenic L2c|LINE|L2 25355 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 145.167-49 chr3 124393687 124393919 + 1.5 NA intron (NM_001024660, intron 11 of 59) intron (NM_001024660, intron 11 of 59) 19471 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 187.834 chr3 56598674 56598963 + 1.5 NA intron (NR_148376, intron 10 of 17) L1MA4A|LINE|L1 41643 NM_001141947 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 228.5-15 chr22 20073230 20073503 + 1.5 NA Intergenic MER31-int|LTR|ERV1 -6866 NM_001190326 54487 Hs.643452 NM_022720 ENSG00000128191 DGCR8 C22orf12|DGCRK6|Gy1|pasha DGCR8 microprocessor complex subunit protein-coding 425 chr16 66808858 66809416 + 1.5 NA intron (NM_001018159, intron 16 of 20) intron (NM_001018159, intron 16 of 20) -7517 NM_001136505 283847 Hs.376505 NM_173616 ENSG00000249961 TERB1 CCDC79 telomere repeat binding bouquet formation protein 1 protein-coding 346.667-3 chr2 23265605 23266072 + 1.5 NA Intergenic L1ME2|LINE|L1 -119341 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 591.166 chr14 88711819 88713064 + 1.5 NA exon (NM_183387, exon 10 of 43) exon (NM_183387, exon 10 of 43) 80512 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 188-22 chr15 67247800 67248087 + 1.5 NA intron (NM_001271885, intron 1 of 9) intron (NM_001271885, intron 1 of 9) 6718 NM_024666 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 176.833-33 chr7 115936639 115936926 + 1.5 NA 3' UTR (NM_001018058, exon 7 of 7) 3' UTR (NM_001018058, exon 7 of 7) 31531 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 215.333-32 chr4 33018839 33019113 + 1.5 NA Intergenic Intergenic 667938 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 203-49 chr9 70989147 70989331 + 1.5 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -120187 NM_024971 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 275.833-4 chr2 204051862 204052105 + 1.5 NA Intergenic Intergenic 115235 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 173.667-55 chr5 119575433 119575569 + 1.5 NA Intergenic Intergenic -54057 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 327.667-9 chr3 36013306 36013929 + 1.5 NA Intergenic LTR16B2|LTR|ERVL 269141 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 427.833 chr14 71453096 71453816 + 1.5 NA intron (NM_001284247, intron 1 of 23) AluJb|SINE|Alu 14517 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 158-43 chr5 161977196 161977375 + 1.5 NA intron (NR_126372, intron 1 of 2) L1ME3|LINE|L1 23911 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 183.667-43 chr20 54999050 54999266 + 1.5 NA Intergenic L1MC4|LINE|L1 -423885 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 354.333 chr2 166288882 166289186 + 1.5 NA intron (NM_001365536, intron 9 of 26) intron (NM_001365536, intron 9 of 26) 86910 NM_001365536 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 290.5-5 chr12 126042697 126042925 + 1.5 NA Intergenic Intergenic -53181 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 247.5-10 chr16 48720022 48720290 + 1.5 NA Intergenic Intergenic -109976 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 396-4 chr2 145266952 145267495 + 1.5 NA Intergenic Intergenic 599256 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 247.833-8 chr5 28106086 28106320 + 1.5 NA Intergenic Intergenic 181462 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 216.5-22 chr21 27631471 27631744 + 1.5 NA Intergenic Intergenic -90772 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 487.334 chr21 14738892 14739247 + 1.5 NA Intergenic Intergenic -95962 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 289.167-6 chr10 75419482 75419768 + 1.5 NA Intergenic L1MC4|LINE|L1 10468 NR_110304 101929234 Hs.694695 NR_110304 LOC101929234 - uncharacterized LOC101929234 ncRNA 228.833-4 chr11 22270063 22270430 + 1.5 NA intron (NM_001142649, intron 17 of 21) intron (NM_001142649, intron 17 of 21) -68135 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 240-17 chr2 77588863 77589098 + 1.5 NA Intergenic Intergenic -66547 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 450.166 chr14 55955654 55956108 + 1.5 NA Intergenic Intergenic -159207 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 177-72 chr9 75608733 75608948 + 1.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -281804 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 263.334-2 chr14 46552494 46552866 + 1.5 NA Intergenic Intergenic 81321 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 201-27 chr3 4914553 4914732 + 1.5 NA intron (NR_125916, intron 1 of 2) intron (NR_125916, intron 1 of 2) -8141 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 234.667-38 chr9 19897225 19897501 + 1.5 NA Intergenic Intergenic -110344 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 332.5-10 chr7 93107625 93107871 + 1.5 NA intron (NM_001193307, intron 1 of 1) intron (NM_001193307, intron 1 of 1) 10231 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 299 chr1 164306361 164306733 + 1.5 NA Intergenic Mam_R4|LINE|Dong-R4 -252813 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 143.5-44 chr20 33221813 33221959 + 1.5 NA intron (NM_178466, intron 1 of 6) intron (NM_178466, intron 1 of 6) 4534 NM_178466 128861 Hs.360989 NM_178466 ENSG00000131059 BPIFA3 C20orf71|SPLUNC3 BPI fold containing family A member 3 protein-coding 326.5-2 chr1 110506522 110506793 + 1.5 NA Intergenic Intergenic 12518 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 286.833 chr12 13514364 13514722 + 1.5 NA Intergenic L1MB3|LINE|L1 -137798 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 343.666-3 chr5 84080576 84080820 + 1.5 NA intron (NM_001278642, intron 5 of 9) intron (NM_001278642, intron 5 of 9) 304169 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 492.999 chr11 11202650 11203065 + 1.5 NA Intergenic AluSz6|SINE|Alu 150393 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 267.167-6 chr13 29014244 29014494 + 1.5 NA intron (NM_001366651, intron 2 of 14) intron (NM_001366651, intron 2 of 14) -10088 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 206.167-23 chr7 50311770 50311950 + 1.5 NA intron (NM_001291847, intron 1 of 4) intron (NM_001291847, intron 1 of 4) 3160 NM_001291837 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 421-2 chr2 57661129 57661600 + 1.5 NA Intergenic Intergenic -246287 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 258.833-20 chr8 84245395 84245669 + 1.5 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 60866 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 188-25 chr17 64109223 64109424 + 1.5 NA intron (NM_001433, intron 1 of 21) intron (NM_001433, intron 1 of 21) 20821 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 205-44 chr9 26261176 26261444 + 1.5 NA Intergenic LTR26|LTR|ERV1 194635 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 381.833 chr11 115866826 115867176 + 1.5 NA Intergenic L1MA4A|LINE|L1 -106801 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 315.5-5 chr5 28138728 28138977 + 1.5 NA Intergenic Intergenic 148813 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 432.5-3 chr8 90959851 90960223 + 1.5 NA TTS (NM_022351) TTS (NM_022351) 25040 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 169-24 chr2 23888450 23888669 + 1.5 NA intron (NR_125717, intron 2 of 28) intron (NR_125717, intron 2 of 28) 38564 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 289.833-7 chr4 81167003 81167344 + 1.5 NA exon (NM_001282485, exon 6 of 19) exon (NM_001282485, exon 6 of 19) 2233 NR_125908 101928942 Hs.664002 NR_125908 ENSG00000251059 LOC101928942 - uncharacterized LOC101928942 ncRNA 248-2 chr12 101592236 101592421 + 1.5 NA Intergenic Intergenic -2603 NM_001254719 4604 Hs.654589 NM_002465 ENSG00000196091 MYBPC1 LCCS4|MYBPCC|MYBPCS myosin binding protein C, slow type protein-coding 331.166-2 chr18 2068726 2069354 + 1.5 NA Intergenic Intergenic 502465 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 370.666-2 chr8 123340172 123340824 + 1.5 NA intron (NM_014109, intron 19 of 27) L1MB4|LINE|L1 -7536 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 430.5-2 chr9 25149471 25149877 + 1.5 NA Intergenic Intergenic 529184 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 352.333-2 chr16 71752319 71752879 + 1.5 NA intron (NM_001128, intron 13 of 22) L1ME4a|LINE|L1 5888 NR_003059 692111 NR_003059 ENSG00000223224 SNORD71 HBII-239|MIRN768|hsa-mir-768 small nucleolar RNA, C/D box 71 snoRNA 573.168 chr14 46295426 46295904 + 1.5 NA intron (NR_102702, intron 3 of 3) L1MA4A|LINE|L1 -175694 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 227.334-11 chr5 9241711 9241952 + 1.5 NA intron (NM_003966, intron 5 of 22) intron (NM_003966, intron 5 of 22) -187936 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 247.833-6 chr3 79868417 79868631 + 1.5 NA Intergenic L2c|LINE|L2 -100526 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 128-91 chr8 114790826 114790919 + 1.5 NA Intergenic Intergenic 877141 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 249.5-24 chr4 74801325 74801529 + 1.5 NA Intergenic L1MC3|LINE|L1 -6904 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 144.833-63 chr6 64651343 64651459 + 1.5 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -650017 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 401.5 chr12 38970364 38970893 + 1.5 NA Intergenic Intergenic -65037 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 377.833-3 chr20 48338380 48338816 + 1.5 NA Intergenic L1PB2|LINE|L1 -21313 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 173.333-31 chr2 173029670 173029888 + 1.5 NA intron (NM_001282901, intron 19 of 24) intron (NM_001282901, intron 19 of 24) -46067 NM_016653 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 341-2 chr14 34932840 34933315 + 1.5 NA intron (NR_151701, intron 2 of 4) intron (NR_151701, intron 2 of 4) -6845 NR_002937 280655 Hs.639271 NR_002937 IGBP1P1 C14orf19 immunoglobulin (CD79A) binding protein 1 pseudogene 1 pseudo 171-7 chr10 106942075 106942223 + 1.5 NA intron (NM_001206569, intron 2 of 25) intron (NM_001206569, intron 2 of 25) 222557 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 238.833-15 chr6 116286915 116287188 + 1.5 NA intron (NR_136524, intron 1 of 4) Kanga1a|DNA|TcMar-Tc2 -6934 NM_003309 7259 Hs.458358 NM_003309 ENSG00000189241 TSPYL1 TSPYL TSPY like 1 protein-coding 299.5-7 chr2 188194938 188195150 + 1.5 NA intron (NR_126396, intron 1 of 2) AluJb|SINE|Alu 92647 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 361.667-2 chr12 47032447 47032902 + 1.5 NA Intergenic Intergenic -46929 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 260-7 chr12 81416473 81416674 + 1.5 NA intron (NM_001220478, intron 3 of 28) intron (NM_001220478, intron 3 of 28) -47159 NM_001220480 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 296.333-4 chr14 55978229 55978585 + 1.5 NA Intergenic Intergenic -140004 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 177.667-71 chr8 131825829 131826092 + 1.5 NA Intergenic Intergenic -78133 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 441.666 chr14 56862714 56863514 + 1.5 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 49956 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 150.333-101 chr8 94504837 94504975 + 1.5 NA intron (NM_015496, intron 16 of 23) intron (NM_015496, intron 16 of 23) -29791 NM_001205262 25788 Hs.30561 NM_006550 ENSG00000197275 RAD54B RDH54 RAD54 homolog B protein-coding 184.5-44 chr6 133040337 133040662 + 1.5 NA Intergenic Intergenic -47581 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 486.333 chr16 53266061 53266695 + 1.5 NA intron (NM_001352157, intron 19 of 37) L2b|LINE|L2 57927 NM_001352158 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 454.166-4 chr4 61053308 61053898 + 1.5 NA Intergenic MIR|SINE|MIR -90053 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 426 chr10 21301208 21301732 + 1.5 NA Intergenic AluJb|SINE|Alu 71480 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 191-34 chr2 177636120 177636406 + 1.5 NA intron (NM_001077197, intron 20 of 20) intron (NM_001077197, intron 20 of 20) -17521 NM_152275 92104 Hs.128384 NM_152275 ENSG00000197557 TTC30A IFT70A|TTC30B tetratricopeptide repeat domain 30A protein-coding 288-19 chr9 27622316 27622633 + 1.5 NA Intergenic L1ME3G|LINE|L1 -48608 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 301.833-7 chr9 103694381 103694656 + 1.5 NA Intergenic Intergenic -305191 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 169-62 chr9 18892609 18892779 + 1.5 NA intron (NM_001040272, intron 26 of 28) intron (NM_001040272, intron 26 of 28) 140515 NM_153707 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 321.333-6 chr5 23938512 23938838 + 1.5 NA Intergenic L1MA3|LINE|L1 -12673 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 180.667-41 chr2 210806850 210807025 + 1.5 NA Intergenic Intergenic 189366 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 585.167 chr2 104961447 104962196 + 1.5 NA intron (NR_110603, intron 1 of 2) L1MB2|LINE|L1 -76248 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 250-6 chr11 37830929 37831117 + 1.5 NA Intergenic Intergenic -107578 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 355.5-4 chr2 30381656 30382043 + 1.5 NA Intergenic L2b|LINE|L2 35203 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 199.5-42 chr7 40753292 40753517 + 1.5 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 226535 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 154-9 chr10 49199188 49199306 + 1.5 NA Intergenic L1ME3A|LINE|L1 -10856 NM_001010863 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 332 chr12 61245533 61245942 + 1.5 NA Intergenic Intergenic 947102 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 389-2 chr9 117958968 117959280 + 1.5 NA Intergenic MER58B|DNA|hAT-Charlie 254721 NM_138557 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 218.5-2 chr1 170072735 170072904 + 1.5 NA intron (NM_014970, intron 1 of 19) intron (NM_014970, intron 1 of 19) 1876 NM_014970 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 407.167 chr1 117192766 117193354 + 1.5 NA intron (NM_024626, intron 1 of 5) MER2|DNA|TcMar-Tigger 10776 NM_001253849 79679 Hs.546434 NM_024626 ENSG00000134258 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 177.5-24 chr13 98764206 98764446 + 1.5 NA Intergenic HERV3-int|LTR|ERV1 -11654 NM_005073 6564 Hs.436893 NM_005073 ENSG00000088386 SLC15A1 HPECT1|HPEPT1|PEPT1 solute carrier family 15 member 1 protein-coding 303 chr10 33268773 33269258 + 1.5 NA intron (NR_045259, intron 2 of 15) intron (NR_045259, intron 2 of 15) 65652 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 195-33 chr3 155946071 155946456 + 1.5 NA Intergenic MER119|DNA|hAT-Charlie 75613 NM_003875 8833 Hs.591314 NM_003875 ENSG00000163655 GMPS GATD7 guanine monophosphate synthase protein-coding 375.333-3 chr14 40733213 40733566 + 1.5 NA Intergenic Intergenic -221322 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 323.333-12 chr7 36128039 36128377 + 1.5 NA Intergenic Intergenic -25046 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 222.333-23 chr4 72557387 72557612 + 1.5 NA intron (NM_014243, intron 2 of 21) intron (NM_014243, intron 2 of 21) 11722 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 336.5-3 chr16 61900382 61900693 + 1.5 NA intron (NM_001796, intron 3 of 11) intron (NM_001796, intron 3 of 11) 135901 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 471.167 chr11 43666799 43667384 + 1.5 NA Intergenic Intergenic -13647 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 340.667-7 chr8 57451922 57452297 + 1.5 NA Intergenic Intergenic 108322 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 468.833-2 chr6 53406400 53406908 + 1.5 NA Intergenic L2|LINE|L2 -57475 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 275.667-11 chr17 26822187 26822377 + 1.5 NA Intergenic Intergenic 266959 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 287.5-20 chr8 136336203 136336563 + 1.5 NA Intergenic L1MC2|LINE|L1 -194415 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 140.667-80 chr7 93263520 93263651 + 1.5 NA intron (NM_001257998, intron 10 of 28) intron (NM_001257998, intron 10 of 28) 31219 NM_017667 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50 subunit of EARP/GARPII complex protein-coding 260.5 chr10 56475230 56475505 + 1.5 NA Intergenic L1MC5|LINE|L1 -114094 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 119.5-90 chr6 98550452 98550548 + 1.5 NA Intergenic MER126|DNA|DNA 281200 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 232.834-7 chr9 79550218 79550484 + 1.5 NA Intergenic Intergenic -21422 NM_001282753 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 351.833-4 chr7 81572954 81573352 + 1.5 NA Intergenic L1MC4|LINE|L1 -11334 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 304.167-6 chr5 5767941 5768294 + 1.5 NA Intergenic Intergenic 345440 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 319-5 chr14 80314257 80314940 + 1.5 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -83541 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 226.833-5 chr11 44152961 44153353 + 1.5 NA intron (NM_001178083, intron 8 of 14) L1MC1|LINE|L1 56960 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 274.5-14 chr4 124056448 124056990 + 1.5 NA Intergenic L2c|LINE|L2 282455 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 231.333-21 chr21 15838810 15839066 + 1.5 NA intron (NM_001283042, intron 17 of 24) intron (NM_001283042, intron 17 of 24) 108956 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 270.5-4 chr11 90890256 90890584 + 1.5 NA intron (NR_104190, intron 6 of 6) intron (NR_104190, intron 6 of 6) -21218 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 410.167-2 chr17 3081979 3082399 + 1.5 NA Intergenic L1M3b|LINE|L1 10807 NM_002548 4991 Hs.532771 NM_002548 ENSG00000184166 OR1D2 OLFR1|OR17-4 olfactory receptor family 1 subfamily D member 2 protein-coding 227.5-14 chr16 69675511 69675707 + 1.5 NA intron (NM_173215, intron 9 of 13) intron (NM_173215, intron 9 of 13) 33066 NR_145753 109617018 NR_145753 SNORD13H - small nucleolar RNA, C/D box 13H snoRNA 171.167-60 chr8 122787522 122787733 + 1.5 NA intron (NM_001362797, intron 1 of 4) intron (NM_001362797, intron 1 of 4) 5972 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 181-61 chr7 100419902 100420092 + 1.5 NA intron (NM_001258008, intron 3 of 15) intron (NM_001258008, intron 3 of 15) 8706 NM_001258008 55063 Hs.105191 NM_017984 ENSG00000078487 ZCWPW1 ZCW1 zinc finger CW-type and PWWP domain containing 1 protein-coding 123.5-78 chr7 97544247 97544345 + 1.5 NA Intergenic Intergenic -187790 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 250-21 chr5 136609814 136610188 + 1.5 NA Intergenic L1MA6|LINE|L1 -244525 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 389.167-3 chr5 7862245 7862742 + 1.5 NA intron (NR_073608, intron 3 of 5) intron (NR_073608, intron 3 of 5) 6538 NM_024091 79072 Hs.653162 NM_024091 ENSG00000124279 FASTKD3 - FAST kinase domains 3 protein-coding 187.5-29 chr3 90013657 90013850 + 1.5 NA Intergenic Intergenic 906132 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 217.667-51 chr8 132045124 132045375 + 1.5 NA intron (NM_001080399, intron 3 of 13) intron (NM_001080399, intron 3 of 13) 14133 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 320-3 chr2 188636644 188637018 + 1.5 NA Intergenic Intergenic 153292 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 348-5 chr20 52807785 52808216 + 1.5 NA Intergenic L1MC3|LINE|L1 -164358 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 523.501 chr6 163136515 163137312 + 1.5 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) 55089 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 222.5-2 chr10 32453146 32453432 + 1.5 NA intron (NR_109827, intron 2 of 8) intron (NR_109827, intron 2 of 8) 7149 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 138-114 chr9 86440078 86440182 + 1.5 NA Intergenic Intergenic -85720 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 162-19 chr12 91614166 91614317 + 1.5 NA Intergenic L2a|LINE|L2 -431424 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 317.5-8 chr2 206123398 206123858 + 1.5 NA 3' UTR (NM_005006, exon 19 of 19) 3' UTR (NM_005006, exon 19 of 19) -7056 NR_033248 100329109 Hs.356055 NR_033248 GCSHP3 - glycine cleavage system protein H pseudogene 3 pseudo 228.167-28 chr8 129947614 129947839 + 1.5 NA intron (NM_001353256, intron 2 of 13) L1ME4a|LINE|L1 -7915 NM_001353299 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 346-2 chr18 6535299 6535924 + 1.5 NA intron (NR_120518, intron 2 of 5) intron (NR_120518, intron 2 of 5) 24195 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 246-17 chr5 16708180 16708589 + 1.5 NA intron (NM_012334, intron 21 of 40) intron (NM_012334, intron 21 of 40) -91326 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 354.5-2 chr2 186404987 186405246 + 1.5 NA Intergenic L2a|LINE|L2 -81144 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 241-5 chr10 52875183 52875452 + 1.5 NA Intergenic AluSz6|SINE|Alu -103617 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 250-5 chr11 22172972 22173159 + 1.5 NA Intergenic Intergenic -20020 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 186.166 chr3 122310986 122311201 + 1.5 NA Intergenic L2|LINE|L2 -14155 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 163.833-31 chr2 117860974 117861090 + 1.5 NA Intergenic MIRb|SINE|MIR 27301 NR_158150 107985939 NR_158150 LOC107985939 - uncharacterized LOC107985939 ncRNA 156.833-33 chr3 28968490 28968662 + 1.5 NA Intergenic L1MA4A|LINE|L1 312363 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 376.667 chr1 101191038 101191861 + 1.5 NA Intergenic L2|LINE|L2 45079 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 469.832 chr14 56629853 56630320 + 1.5 NA intron (NM_017799, intron 12 of 15) L1MD2|LINE|L1 50288 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 363.5-4 chr5 62184282 62184762 + 1.5 NA Intergenic X9_LINE|LINE|L1 -121640 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 275.5-8 chr20 30976372 30976657 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr -281150 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 214-49 chr7 91126777 91126998 + 1.5 NA intron (NM_012395, intron 13 of 13) intron (NM_012395, intron 13 of 13) -137546 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 269-7 chr2 66682587 66682827 + 1.5 NA intron (NR_110156, intron 4 of 5) LTR33A|LTR|ERVL 20520 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 281-9 chr18 46502721 46503042 + 1.5 NA intron (NM_001145472, intron 19 of 23) intron (NM_001145472, intron 19 of 23) 16205 NM_001145473 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 343.833-3 chr17 70223013 70223373 + 1.5 NA Intergenic Intergenic 53658 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 221.333-4 chr11 112191634 112191928 + 1.5 NA intron (NM_031938, intron 2 of 11) L1M5|LINE|L1 15415 NM_001037290 83875 Hs.728325 NM_031938 ENSG00000197580 BCO2 B-DIOX-II|BCDO2 beta-carotene oxygenase 2 protein-coding 192.167-12 chr14 33036584 33036760 + 1.5 NA intron (NM_001165893, intron 1 of 10) intron (NM_001165893, intron 1 of 10) 97793 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 331.833-8 chr3 8284158 8284636 + 1.5 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 217261 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 503.333 chr17 59271058 59271817 + 1.5 NA intron (NM_182569, intron 8 of 9) intron (NM_182569, intron 8 of 9) 50926 NM_001165993 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 282.333-11 chr3 5840734 5841274 + 1.5 NA Intergenic Intergenic -590749 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 253.333-23 chr8 122714676 122714958 + 1.5 NA Intergenic Intergenic -20711 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 322.5-10 chr8 107286694 107287072 + 1.5 NA intron (NM_001199859, intron 6 of 8) intron (NM_001199859, intron 6 of 8) 49632 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 216.5-17 chr2 198682662 198682897 + 1.5 NA Intergenic L1MB1|LINE|L1 -307682 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 159.833-12 chr10 44326970 44327103 + 1.5 NA Intergenic Intergenic 34286 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 227.333-17 chr2 4673336 4673879 + 1.5 NA Intergenic Intergenic -17385 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 501.167 chr21 45195545 45196107 + 1.5 NA intron (NR_027674, intron 8 of 11) L1MC1|LINE|L1 -38514 NR_135279 114042 Hs.375832 NR_135279 ENSG00000182586 LINC00334 C21orf89|NCRNA00334 long intergenic non-protein coding RNA 334 ncRNA 228-38 chrX 152379129 152379364 + 1.5 NA intron (NM_000808, intron 1 of 9) L1MEd|LINE|L1 13053 NR_029521 406897 NR_029521 ENSG00000207957 MIR105-1 MIRN105-1|mir-105-1 microRNA 105-1 ncRNA 189.667-45 chr7 33301250 33301403 + 1.5 NA intron (NM_198428, intron 9 of 22) L1MA3|LINE|L1 171762 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 405.167 chr14 84774223 84774677 + 1.5 NA Intergenic L1M2|LINE|L1 -497482 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 411.167 chr9 32826553 32827513 + 1.5 NA Intergenic MER4CL34|LTR|ERV1 43493 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 182.333-10 chr11 26413662 26413794 + 1.5 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) -60174 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 238-22 chr4 156938336 156938548 + 1.5 NA intron (NR_036641, intron 1 of 6) intron (NR_036641, intron 1 of 6) 33357 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 275.167-14 chr5 102737265 102737659 + 1.5 NA Intergenic L1MD1|LINE|L1 -17321 NM_001319943 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 305.167-8 chr5 31872431 31873121 + 1.5 NA intron (NM_178140, intron 2 of 24) (GT)n|Simple_repeat|Simple_repeat 63383 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 227.167-8 chr15 51490719 51490940 + 1.5 NA intron (NM_001174116, intron 20 of 42) intron (NM_001174116, intron 20 of 42) 113583 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 258.333-34 chr9 125828993 125829321 + 1.5 NA intron (NR_024122, intron 2 of 7) intron (NR_024122, intron 2 of 7) 80974 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 406.499 chr2 153870210 153870583 + 1.5 NA Intergenic Intergenic -1526 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 165.166 chr7 136774598 136774771 + 1.5 NA Intergenic L1MA2|LINE|L1 -93968 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 272.5-9 chr2 138166265 138166501 + 1.5 NA Intergenic L1PA16|LINE|L1 64499 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 332.833 chr1 78952423 78952680 + 1.5 NA intron (NM_022159, intron 2 of 14) GA-rich|Low_complexity|Low_complexity 54179 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 447 chr10 32711395 32711921 + 1.5 NA exon (NM_001321115, exon 26 of 44) exon (NM_001321115, exon 26 of 44) 189814 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 328.167-4 chr6 148030361 148031151 + 1.5 NA Intergenic HSMAR2|DNA|TcMar-Mariner -241572 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 210.5-48 chr7 122535716 122535867 + 1.5 NA intron (NM_001167940, intron 8 of 29) intron (NM_001167940, intron 8 of 29) 163326 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 232.5-31 chr6 34707335 34707546 + 1.5 NA Intergenic AluJo|SINE|Alu 10495 NR_134626 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 178-19 chr15 85398226 85398399 + 1.5 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 17709 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 292.667-8 chr2 103487183 103487530 + 1.5 NA Intergenic Intergenic -502927 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 171.5-11 chr12 22406083 22406256 + 1.5 NA Intergenic L1PA5|LINE|L1 -71455 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 224.5-13 chr2 67391667 67391899 + 1.5 NA Intergenic Intergenic -5550 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 311.167-6 chr6 53428338 53428677 + 1.5 NA Intergenic HAL1b|LINE|L1 -79328 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 289.833-5 chr3 18618047 18618374 + 1.5 NA Intergenic L1M4|LINE|L1 -172618 NM_001322872 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 130.833-63 chr6 114265719 114265815 + 1.5 NA intron (NR_125845, intron 9 of 9) L2|LINE|L2 -202890 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 270.667-5 chr16 6277978 6278308 + 1.5 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 258440 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 165.167-47 chr6 39099698 39099858 + 1.5 NA Intergenic L1ME4b|LINE|L1 15408 NM_001304793 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 189.5-29 chr2 121482101 121482243 + 1.5 NA intron (NM_015282, intron 8 of 38) intron (NM_015282, intron 8 of 38) -48708 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 323.334-5 chr2 188374455 188374748 + 1.5 NA intron (NR_045563, intron 2 of 12) intron (NR_045563, intron 2 of 12) 77109 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 298.5-20 chr8 52566398 52566646 + 1.5 NA Intergenic Intergenic -1092 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 244.333 chr1 95774759 95775002 + 1.5 NA Intergenic Intergenic -217188 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 228-36 chr8 139398090 139398326 + 1.5 NA Intergenic Intergenic 304915 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 354.167-5 chr2 174839510 174839966 + 1.5 NA intron (NM_001025201, intron 7 of 12) AluJb|SINE|Alu 7880 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 233.334-5 chr3 86167463 86167707 + 1.5 NA Intergenic Intergenic -314358 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 208.667-3 chr1 168228634 168228797 + 1.5 NA intron (NM_199344, intron 1 of 7) intron (NM_199344, intron 1 of 7) 2711 NM_199344 375035 Hs.645435 NM_199344 ENSG00000213064 SFT2D2 UNQ512|dJ747L4.C1.2 SFT2 domain containing 2 protein-coding 132.333-14 chr10 84422608 84422739 + 1.5 NA intron (NM_018999, intron 4 of 10) intron (NM_018999, intron 4 of 10) -2266 NM_001284243 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 367.833-4 chr7 84396444 84396854 + 1.5 NA Intergenic L1MEd|LINE|L1 -135827 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 462.333 chr8 67036080 67036532 + 1.5 NA Intergenic Intergenic -7752 NM_001364910 286187 Hs.583933 NM_001013626 ENSG00000178125 PPP1R42 LRRC67|TLLR|TLRR|dtr protein phosphatase 1 regulatory subunit 42 protein-coding 464.333-2 chr13 89442516 89443082 + 1.5 NA Intergenic Intergenic 57710 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 221.5-28 chr4 170145904 170146312 + 1.5 NA Intergenic Intergenic -55721 NM_001286683 51166 Hs.529735 NM_016228 ENSG00000109576 AADAT KAT2|KATII|KYAT2 aminoadipate aminotransferase protein-coding 205.166 chr14 65877948 65878090 + 1.5 NA Intergenic Intergenic 406917 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 420.5 chr12 104651223 104651624 + 1.5 NA intron (NM_018413, intron 2 of 2) intron (NM_018413, intron 2 of 2) 59790 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 160.333-32 chr20 1039246 1039370 + 1.5 NA Intergenic Intergenic -36997 NM_001029871 343637 Hs.444980 NM_001029871 ENSG00000101282 RSPO4 C20orf182|CRISTIN4 R-spondin 4 protein-coding 338-2 chr1 203625687 203625920 + 1.5 NA promoter-TSS (NM_001001396) promoter-TSS (NM_001001396) -984 NM_001001396 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 344.667 chr2 62936011 62936284 + 1.5 NA intron (NM_001142615, intron 10 of 22) L1ME3B|LINE|L1 111564 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 560.666-2 chr17 79347227 79347820 + 1.5 NA intron (NM_001082575, intron 2 of 14) L1MEh|LINE|L1 168625 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 290.333-8 chr3 22759957 22760461 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 442369 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 235-7 chr11 16205121 16205378 + 1.5 NA intron (NM_033326, intron 4 of 15) intron (NM_033326, intron 4 of 15) 151297 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 327.667-13 chr7 145919863 145920191 + 1.5 NA Intergenic L1M2|LINE|L1 -854244 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 162-15 chr11 43451566 43451746 + 1.5 NA intron (NM_018259, intron 21 of 23) intron (NM_018259, intron 21 of 23) 92736 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 433 chr1 66944699 66945026 + 1.5 NA intron (NM_001350530, intron 5 of 15) AluJb|SINE|Alu 14606 NM_001077704 57708 Hs.605432 NM_020948 ENSG00000198160 MIER1 ER1|MI-ER1 MIER1 transcriptional regulator protein-coding 382-4 chr8 89657085 89657389 + 1.5 NA Intergenic L1MA5A|LINE|L1 100474 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 351.5-7 chr9 3770071 3770421 + 1.5 NA Intergenic Intergenic 102160 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 209.167-3 chr1 222555783 222556062 + 1.5 NA Intergenic Intergenic -7818 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 276.5-15 chr7 25214751 25215063 + 1.5 NA Intergenic Intergenic 13579 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 246.333-21 chr7 85425942 85426145 + 1.5 NA intron (NR_134240, intron 1 of 3) intron (NR_134240, intron 1 of 3) 4921 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 217.5-18 chr17 58689176 58689345 + 1.5 NA intron (NM_031272, intron 1 of 31) AluSc|SINE|Alu 2795 NM_198393 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 157.333-78 chr9 118666379 118666719 + 1.5 NA Intergenic MIRc|SINE|MIR -13122 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 352-4 chr9 583906 584324 + 1.5 NA intron (NM_001256877, intron 2 of 12) intron (NM_001256877, intron 2 of 12) 79560 NM_001354331 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 312.167-8 chr6 149793528 149793991 + 1.5 NA intron (NM_001360452, intron 5 of 7) intron (NM_001360452, intron 5 of 7) 44018 NM_001360456 5110 Hs.279257 NM_005389 ENSG00000120265 PCMT1 PIMT protein-L-isoaspartate (D-aspartate) O-methyltransferase protein-coding 276 chr1 63285389 63285749 + 1.5 NA intron (NR_038252, intron 3 of 11) L1M3e|LINE|L1 31688 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 178.5-59 chr5 42825817 42825994 + 1.5 NA Intergenic LTR1F|LTR|ERV1 -13829 NM_001093726 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 176.5-25 chr14 80405621 80405777 + 1.5 NA intron (NR_038355, intron 8 of 8) intron (NR_038355, intron 8 of 8) -174642 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 628.167 chr2 22418079 22419315 + 1.5 NA Intergenic Intergenic -117782 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 140.333-66 chr5 74270504 74270686 + 1.5 NA Intergenic L1M5|LINE|L1 37730 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 421.001 chr4 106280298 106280786 + 1.5 NA intron (NM_001290768, intron 3 of 26) L1MA3|LINE|L1 -35068 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 349-4 chr12 8753206 8753645 + 1.5 NA intron (NR_147950, intron 4 of 8) L1M2|LINE|L1 55434 NR_147947 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 291.833-9 chr8 88825467 88825766 + 1.5 NA Intergenic Intergenic -498133 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 189.5-7 chr10 20301190 20301577 + 1.5 NA Intergenic MIR1_Amn|SINE|MIR -250587 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 321.167-2 chr12 117922206 117922510 + 1.5 NA intron (NM_173598, intron 1 of 19) intron (NM_173598, intron 1 of 19) 46632 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 189.5-36 chr3 2177157 2177361 + 1.5 NA intron (NM_175607, intron 2 of 24) intron (NM_175607, intron 2 of 24) -33018 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 324.667-3 chr17 69016390 69016772 + 1.5 NA intron (NM_080283, intron 21 of 38) intron (NM_080283, intron 21 of 38) 11867 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 210.833-21 chr3 155582611 155582850 + 1.5 NA intron (NM_001349252, intron 6 of 24) intron (NM_001349252, intron 6 of 24) 93613 NM_001349250 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 144-51 chr4 44218541 44218657 + 1.5 NA intron (NM_198353, intron 1 of 1) L1MA1|LINE|L1 201537 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 214.167-7 chr16 72605125 72605341 + 1.5 NA intron (NR_159372, intron 1 of 7) L1MB8|LINE|L1 59737 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 276.167-3 chr14 70585612 70585931 + 1.5 NA exon (NM_001284209, exon 7 of 8) exon (NM_001284209, exon 7 of 8) 14919 NM_005466 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 602.166 chr22 27194030 27194671 + 1.5 NA Intergenic Intergenic 6834 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 192-27 chr22 31648857 31649014 + 1.5 NA intron (NM_001326415, intron 1 of 8) MIRc|SINE|MIR -10412 NM_178022 23761 Hs.420559 NM_014338 ENSG00000241878 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 306.5-4 chr16 19078417 19078653 + 1.5 NA non-coding (NR_163448, exon 6 of 6) non-coding (NR_163448, exon 6 of 6) 9888 NM_001370491 10229 Hs.157113 NM_016138 ENSG00000167186 COQ7 CAT5|CLK-1|CLK1|COQ10D8 coenzyme Q7, hydroxylase protein-coding 306-9 chr2 83237085 83237386 + 1.5 NA Intergenic Intergenic -285579 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 282.167-3 chr11 79574761 79575049 + 1.5 NA Intergenic MIRb|SINE|MIR -133875 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 221.833-8 chr18 50847810 50847968 + 1.5 NA Intergenic Intergenic -22509 NM_001369508 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 199-15 chr20 23368185 23368360 + 1.5 NA intron (NM_001317012, intron 4 of 6) intron (NM_001317012, intron 4 of 6) 3909 NM_001317019 64412 Hs.709462 NM_022482 ENSG00000125812 GZF1 JLSM|ZBTB23|ZNF336 GDNF inducible zinc finger protein 1 protein-coding 361.333-3 chr16 54147608 54147965 + 1.5 NA Intergenic Intergenic 108393 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 242-11 chr2 31418327 31418538 + 1.5 NA Intergenic L1M1|LINE|L1 -3690 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 370-3 chr2 120285889 120286150 + 1.5 NA exon (NM_002881, exon 3 of 5) exon (NM_002881, exon 3 of 5) 33167 NM_001369400 5899 Hs.469820 NM_002881 ENSG00000144118 RALB - RAS like proto-oncogene B protein-coding 266-21 chr7 55153470 55153750 + 1.5 NA intron (NM_201284, intron 6 of 15) intron (NM_201284, intron 6 of 15) 35339 NR_047551 100507500 Hs.720489 NR_047551 ENSG00000224057 EGFR-AS1 - EGFR antisense RNA 1 ncRNA 234.5-26 chr6 38919635 38919907 + 1.5 NA intron (NM_001371, intron 69 of 91) intron (NM_001371, intron 69 of 91) 33336 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 324.167-3 chr4 40986011 40986648 + 1.5 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -129137 NM_001166053 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 343-3 chr3 29459780 29460216 + 1.5 NA intron (NM_001003792, intron 2 of 13) L3|LINE|CR1 178686 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 302.834-3 chr6 152035581 152036022 + 1.5 NA intron (NM_001122741, intron 6 of 8) L1M5|LINE|L1 132486 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 228-33 chr7 18595333 18595701 + 1.5 NA intron (NM_001321893, intron 7 of 11) intron (NM_001321893, intron 7 of 11) 86247 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 204.5-18 chr2 75036179 75036359 + 1.5 NA Intergenic Charlie20a|DNA|hAT-Charlie -54543 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 131.833-60 chr6 64771384 64771497 + 1.5 NA intron (NM_001292009, intron 22 of 43) L1M5|LINE|L1 -529978 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 330.5-2 chr16 3102995 3103359 + 1.5 NA Intergenic AluJo|SINE|Alu -3883 NM_001282416 84891 Hs.334515 NM_032805 ENSG00000130182 ZSCAN10 ZFP206|ZNF206 zinc finger and SCAN domain containing 10 protein-coding 231.667-24 chr3 80370399 80370635 + 1.5 NA Intergenic Intergenic -394380 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 204.833-6 chr10 63951518 63951691 + 1.5 NA Intergenic L1ME3A|LINE|L1 -429714 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 190.334-5 chr8 88071650 88071860 + 1.5 NA intron (NM_005941, intron 7 of 9) intron (NM_005941, intron 7 of 9) -197740 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 312.501 chr15 62370950 62371241 + 1.5 NA Intergenic Intergenic 28066 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 194.833-18 chr3 99603017 99603246 + 1.5 NA Intergenic L1PA15|LINE|L1 -35463 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 147.333-92 chr8 127007279 127007431 + 1.5 NA Intergenic MIR|SINE|MIR -5799 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 116.5-80 chr6 142413198 142413301 + 1.5 NA intron (NM_198569, intron 18 of 24) intron (NM_198569, intron 18 of 24) 111242 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 226-6 chr14 66933088 66933398 + 1.5 NA intron (NM_020806, intron 8 of 22) intron (NM_020806, intron 8 of 22) -256197 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 150.167-36 chr2 230559351 230559482 + 1.5 NA Intergenic MER34A|LTR|ERV1 141113 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 384.334-2 chr7 112915405 112915783 + 1.5 NA intron (NM_152556, intron 1 of 4) intron (NM_152556, intron 1 of 4) 24281 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 267.5-6 chr2 34168440 34168870 + 1.5 NA intron (NR_126403, intron 4 of 5) L1MA7|LINE|L1 101429 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 167.5-37 chr2 209610694 209610876 + 1.5 NA intron (NM_001039538, intron 3 of 14) intron (NM_001039538, intron 3 of 14) 31106 NM_031845 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 215-15 chr19 28079972 28080191 + 1.5 NA Intergenic L1MD1|LINE|L1 -286141 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 355 chr1 70455000 70455325 + 1.5 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 43894 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 180.333-49 chr5 86420872 86421174 + 1.5 NA Intergenic (ATATAC)n|Simple_repeat|Simple_repeat 138579 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 238 chr1 77504230 77504430 + 1.5 NA intron (NM_012093, intron 10 of 13) L1ME4a|LINE|L1 178328 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 325.333-7 chr4 31157214 31157837 + 1.5 NA Intergenic Intergenic -13619 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 331.833-4 chr14 65910529 65910757 + 1.5 NA Intergenic LTR50|LTR|ERVL 439541 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 251.333-21 chr7 53050038 53050322 + 1.5 NA Intergenic Intergenic 14547 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 201-39 chr5 123141476 123141743 + 1.5 NA intron (NM_001136239, intron 3 of 7) MIRb|SINE|MIR -51293 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 240.5-12 chr4 33007208 33007508 + 1.5 NA Intergenic Intergenic 656320 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 300.333-14 chr5 66233614 66234097 + 1.5 NA Intergenic Intergenic -24409 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 301.5-4 chr18 5423847 5424122 + 1.5 NA intron (NM_001281535, intron 12 of 21) intron (NM_001281535, intron 12 of 21) 116572 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 334.833-3 chr2 102174664 102174910 + 1.5 NA intron (NM_001288706, intron 10 of 11) intron (NM_001288706, intron 10 of 11) -12186 NM_001351448 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 261.167-14 chr4 46005805 46006180 + 1.5 NA Intergenic L1MC4|LINE|L1 118062 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 419.167-3 chr8 121035633 121036384 + 1.5 NA Intergenic L1MA9|LINE|L1 -223962 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 314-11 chr6 83286163 83286417 + 1.5 NA intron (NM_002395, intron 6 of 13) MIR|SINE|MIR -92390 NM_001199917 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 312.834 chr10 28944538 28944764 + 1.5 NA Intergenic L1MD2|LINE|L1 98243 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 582 chr20 51633042 51633779 + 1.5 NA intron (NM_006045, intron 15 of 27) intron (NM_006045, intron 15 of 27) -70571 NM_001258294 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 133.5-70 chr7 8861583 8861792 + 1.5 NA Intergenic Intergenic 428078 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 266.5-14 chr8 6293123 6293516 + 1.5 NA Intergenic L1MEg|LINE|L1 113229 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 237.167-17 chr4 61489613 61489803 + 1.5 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 287536 NM_001371342 197.333-17 chr14 83273653 83273872 + 1.5 NA Intergenic Intergenic 631130 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 249-2 chr10 50404790 50405264 + 1.5 NA intron (NM_147156, intron 6 of 10) L1MC4a|LINE|L1 -156417 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 230.833-10 chr2 139192392 139192676 + 1.5 NA Intergenic L2a|LINE|L2 295210 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 368.5-2 chr5 88517462 88517723 + 1.5 NA Intergenic Intergenic -78502 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 226.5-6 chr1 229334488 229334733 + 1.5 NA intron (NM_145257, intron 2 of 3) L1M5|LINE|L1 8437 NM_145257 126731 Hs.585011 NM_145257 ENSG00000154429 CCSAP C1orf96|CSAP centriole, cilia and spindle associated protein protein-coding 261-2 chr1 233257261 233257614 + 1.5 NA intron (NM_014801, intron 5 of 33) MER94|DNA|hAT-Blackjack 38288 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 244.5-25 chr8 52655351 52655627 + 1.5 NA intron (NM_001083617, intron 15 of 23) intron (NM_001083617, intron 15 of 23) 58946 NM_014781 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 331.5-4 chr20 20494901 20495258 + 1.5 NA intron (NM_020343, intron 36 of 39) intron (NM_020343, intron 36 of 39) 126975 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 233.5-10 chr17 80750757 80751309 + 1.5 NA intron (NM_020761, intron 5 of 33) intron (NM_020761, intron 5 of 33) 54599 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 200.333-19 chr2 158191221 158191430 + 1.5 NA intron (NM_138803, intron 11 of 13) intron (NM_138803, intron 11 of 13) 24675 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 209.667-36 chr7 33185401 33185643 + 1.5 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 55958 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 357.333-6 chr5 60070104 60070386 + 1.5 NA intron (NM_001349243, intron 2 of 16) L1MB1|LINE|L1 -176519 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 262.833-5 chr13 66733142 66733333 + 1.5 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -91932 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 241.5-27 chr8 131998186 131998426 + 1.5 NA intron (NM_015137, intron 19 of 22) intron (NM_015137, intron 19 of 22) 61076 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 300.333-3 chr10 70577831 70578212 + 1.5 NA Intergenic AluJo|SINE|Alu 24720 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 335.833-2 chr13 60245304 60245566 + 1.5 NA intron (NR_047022, intron 1 of 2) Charlie7|DNA|hAT-Charlie 22669 NR_047022 100874169 Hs.171027 NR_047022 LINC00434 - long intergenic non-protein coding RNA 434 ncRNA 214.333-41 chr6 52669614 52670123 + 1.5 NA TTS (NR_024403) TTS (NR_024403) -1245 NM_014051 28978 Hs.94896 NM_014051 ENSG00000096092 TMEM14A C6orf73|PTD011 transmembrane protein 14A protein-coding 201.5-16 chr2 43580910 43581108 + 1.5 NA intron (NM_001083953, intron 8 of 37) intron (NM_001083953, intron 8 of 37) 14965 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 359.666-2 chr5 3095232 3095512 + 1.5 NA Intergenic Intergenic -82463 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 201.667-44 chr7 105427212 105427485 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -37958 NM_001350742 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 224-20 chr18 8772589 8772824 + 1.5 NA intron (NM_015210, intron 4 of 16) L1MA9|LINE|L1 55325 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 366.5-3 chr2 18576655 18577092 + 1.5 NA exon (NM_001199103, exon 7 of 9) exon (NM_001199103, exon 7 of 9) 12696 NM_001002006 93034 Hs.744358 NM_033253 ENSG00000185013 NT5C1B AIRP|CN-IB|CN1B 5'-nucleotidase, cytosolic IB protein-coding 215.5-40 chr8 108622813 108623061 + 1.5 NA intron (NR_136411, intron 2 of 3) L2c|LINE|L2 164657 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 173.167-33 chr5 5745624 5745878 + 1.5 NA Intergenic L1MC3|LINE|L1 323074 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 127.5-17 chr11 116209061 116209229 + 1.5 NA Intergenic AluJb|SINE|Alu -430277 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 217-18 chr20 39479917 39480523 + 1.5 NA Intergenic Intergenic -255472 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 331.833-7 chr2 137969795 137970305 + 1.5 NA intron (NM_001024075, intron 1 of 2) intron (NM_001024075, intron 1 of 2) 5577 NM_006895 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 327-4 chr4 87744274 87744804 + 1.5 NA Intergenic MIR|SINE|MIR -55015 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 180.167-53 chr7 41204603 41204828 + 1.5 NA Intergenic Intergenic 103111 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 224.834 chr1 42314210 42314449 + 1.5 NA intron (NM_001198850, intron 1 of 12) AluSq2|SINE|Alu 20626 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 634.5 chr8 121835630 121836177 + 1.5 NA Intergenic Intergenic -194463 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 411.667-2 chr7 37700717 37701273 + 1.5 NA intron (NM_001329994, intron 3 of 3) intron (NM_001329994, intron 3 of 3) 17229 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 451.667 chr11 43916885 43917428 + 1.5 NA intron (NR_038907, intron 3 of 5) intron (NR_038907, intron 3 of 5) 3788 NR_038907 100507300 Hs.664588 NR_038907 ENSG00000244926 ALKBH3-AS1 - ALKBH3 antisense RNA 1 ncRNA 214 chr1 85507755 85507947 + 1.5 NA intron (NM_001134445, intron 1 of 6) L1MC5a|LINE|L1 -42692 NM_012137 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 333.333-2 chr15 59532862 59533329 + 1.5 NA Intergenic MIRc|SINE|MIR -78688 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 226-14 chr3 11445650 11445915 + 1.5 NA intron (NM_001349238, intron 17 of 17) L1ME3B|LINE|L1 123016 NM_001128221 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 256.5-27 chr5 83856939 83857168 + 1.5 NA Intergenic Intergenic -136198 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 676.667 chr14 45462014 45463077 + 1.5 NA Intergenic Intergenic -209343 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 349-3 chr10 123596879 123597254 + 1.5 NA Intergenic Intergenic -69289 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 170-26 chr16 58865378 58865542 + 1.5 NA Intergenic Intergenic -131144 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 196.833-20 chr7 78469174 78469324 + 1.5 NA intron (NM_001301128, intron 6 of 20) intron (NM_001301128, intron 6 of 20) 122007 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 202.667-33 chr3 172810627 172810793 + 1.5 NA intron (NM_001349095, intron 22 of 25) intron (NM_001349095, intron 22 of 25) 59708 NM_001349099 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 153.333-13 chr12 7912794 7912921 + 1.5 NA Intergenic L1MEd|LINE|L1 -21661 NM_001286237 144195 Hs.655169 NM_153449 ENSG00000173262 SLC2A14 GLUT14|SLC2A3P3 solute carrier family 2 member 14 protein-coding 323.167 chr10 62925566 62926170 + 1.5 NA Intergenic Intergenic -106701 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 127.5-72 chr9 13599512 13599614 + 1.5 NA Intergenic MER33|DNA|hAT-Charlie -168234 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 288-12 chr3 194534581 194534819 + 1.5 NA Intergenic Intergenic 47560 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 313.833-8 chr8 62914152 62914615 + 1.5 NA intron (NM_001304533, intron 4 of 6) L1PA14|LINE|L1 -63478 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 401.833 chr14 35952512 35953250 + 1.5 NA Intergenic Intergenic -117546 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 203.667-14 chr18 60937156 60937401 + 1.5 NA Intergenic L1ME3C|LINE|L1 -396152 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 574.667 chr14 70377451 70378167 + 1.5 NA intron (NM_001202549, intron 2 of 4) intron (NM_001202549, intron 2 of 4) -18126 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 406.667 chr20 53420326 53420633 + 1.5 NA intron (NM_173485, intron 2 of 2) AluY|SINE|Alu -132291 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 241.333-22 chr5 13558426 13558591 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 385972 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 288.333-7 chr22 28591309 28591633 + 1.5 NA intron (NM_001145418, intron 2 of 22) MIRc|SINE|MIR 88394 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 264.333-4 chr11 79283843 79284074 + 1.5 NA intron (NM_001098816, intron 2 of 33) L1MB7|LINE|L1 118151 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 275.5-4 chr17 42395493 42395739 + 1.5 NA Intergenic AluSx|SINE|Alu -7121 NM_139276 6774 Hs.463059 NM_003150 ENSG00000168610 STAT3 ADMIO|ADMIO1|APRF|HIES signal transducer and activator of transcription 3 protein-coding 222-18 chr2 29164405 29164843 + 1.5 NA intron (NM_001287528, intron 13 of 14) intron (NM_001287528, intron 13 of 14) 49209 NM_024692 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 221.833-24 chr6 126541809 126542014 + 1.5 NA Intergenic L2a|LINE|L2 57280 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 318.833-4 chr10 59988705 59989090 + 1.5 NA Intergenic L1MA3|LINE|L1 -27984 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 345.5-4 chr2 211538434 211538805 + 1.5 NA intron (NM_001042599, intron 20 of 26) L3|LINE|CR1 887741 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 440.668 chr1 68632463 68633031 + 1.5 NA Intergenic Intergenic -135665 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 421.667 chr2 240062063 240062858 + 1.5 NA Intergenic L1M4|LINE|L1 -16388 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 188-68 chr9 2595027 2595161 + 1.5 NA intron (NR_015375, intron 1 of 3) L1ME4a|LINE|L1 -26693 NM_001322225 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 135.5-4 chr1 96322942 96323066 + 1.5 NA intron (NR_110693, intron 3 of 5) L1MA9|LINE|L1 51121 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 174.167-10 chr12 43010826 43011072 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL -144366 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 305.333-7 chr2 63940084 63940481 + 1.5 NA intron (NM_001005739, intron 11 of 22) intron (NM_001005739, intron 11 of 22) 79146 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 239-14 chr5 86043279 86043517 + 1.5 NA Intergenic Intergenic -239046 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 331-10 chr8 82020232 82020633 + 1.5 NA Intergenic Intergenic -178146 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 176.333-48 chr4 149125049 149125232 + 1.5 NA Intergenic Intergenic -29155 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 319.667-15 chr7 8963686 8964007 + 1.5 NA Intergenic Intergenic 530237 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 230.667-23 chr5 91697468 91697774 + 1.5 NA Intergenic L1PB1|LINE|L1 -314304 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 238.667-10 chr15 72007478 72007691 + 1.5 NA intron (NM_006901, intron 8 of 41) intron (NM_006901, intron 8 of 41) -106674 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 406.833 chr5 35083986 35084389 + 1.5 NA intron (NM_001204314, intron 2 of 6) intron (NM_001204314, intron 2 of 6) 33935 NM_001204318 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 260-13 chr2 187167317 187167591 + 1.5 NA Intergenic Intergenic 280798 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 176.833-25 chr4 6807309 6807449 + 1.5 NA intron (NM_014743, intron 2 of 9) intron (NM_014743, intron 2 of 9) 24647 NM_001100590 9778 Hs.79276 NM_014743 ENSG00000170871 KIAA0232 - KIAA0232 protein-coding 484.167 chr12 62904450 62905555 + 1.5 NA intron (NM_020700, intron 1 of 9) MIR|SINE|MIR 30148 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 197.833-24 chr4 32610949 32611188 + 1.5 NA Intergenic Intergenic 260030 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 259 chr10 63971062 63971371 + 1.5 NA Intergenic L1MDa|LINE|L1 -449326 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 180.5-48 chr8 67892318 67892489 + 1.5 NA Intergenic Intergenic -59643 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 507-3 chr8 87488406 87489072 + 1.5 NA Intergenic Intergenic 385276 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 350.5-4 chr8 132020605 132020909 + 1.5 NA Intergenic L1MA9|LINE|L1 38625 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 268.833 chr1 69624221 69624479 + 1.5 NA intron (NM_001366842, intron 1 of 7) L1ME3B|LINE|L1 55009 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 150.666-6 chr9 73414959 73415064 + 1.5 NA Intergenic MIRc|SINE|MIR 263146 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 333.167-2 chr6 164730570 164730820 + 1.5 NA Intergenic Intergenic 91368 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 394 chr1 192607957 192608277 + 1.5 NA Intergenic MIRc|SINE|MIR -28030 NM_002927 6003 Hs.497220 NM_002927 ENSG00000127074 RGS13 - regulator of G protein signaling 13 protein-coding 266-4 chr10 120173541 120173775 + 1.5 NA Intergenic Intergenic 181565 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 306-8 chr2 65614725 65615003 + 1.5 NA Intergenic L1ME4a|LINE|L1 -182265 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 323.5-5 chr7 55814268 55814497 + 1.5 NA intron (NM_207366, intron 7 of 9) L1MA3|LINE|L1 48370 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 144.166 chr14 54933096 54933232 + 1.5 NA Intergenic Intergenic -30338 NM_001024071 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 278-16 chr9 27764349 27764742 + 1.5 NA Intergenic Intergenic -190679 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 179.5-28 chr5 162687839 162688023 + 1.5 NA Intergenic Intergenic 620289 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 145-34 chr17 41193374 41193487 + 1.5 NA Intergenic L1M4|LINE|L1 3543 NM_001190460 728318 Hs.727478 NM_001190460 ENSG00000240542 KRTAP9-1 KAP9.1|KRTAP9L3 keratin associated protein 9-1 protein-coding 162.167-42 chr5 41983087 41983299 + 1.5 NA Intergenic L1PA7|LINE|L1 57912 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 165.167-43 chr5 84977135 84977353 + 1.5 NA Intergenic L1PA4|LINE|L1 -592364 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 237.5-21 chr5 13204059 13204313 + 1.5 NA Intergenic L1M5|LINE|L1 -171300 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 184-40 chr4 64291439 64291633 + 1.5 NA intron (NM_001363796, intron 8 of 11) intron (NM_001363796, intron 8 of 11) 117914 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 193-28 chr20 9095415 9095569 + 1.5 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) 26438 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 202.5-26 chr9 2542137 2542279 + 1.5 NA intron (NR_015375, intron 1 of 3) intron (NR_015375, intron 1 of 3) -79579 NM_001322225 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 265.667-8 chr14 26246094 26246367 + 1.5 NA Intergenic MIR|SINE|MIR 307200 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 253-8 chr13 85014460 85014857 + 1.5 NA Intergenic Intergenic 133399 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 338-12 chr6 150219924 150220220 + 1.5 NA intron (NM_030949, intron 3 of 3) AluSz6|SINE|Alu 77028 NM_030949 81706 Hs.486798 NM_030949 ENSG00000198729 PPP1R14C CPI17-like|KEPI|NY-BR-81 protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding 256.833-10 chr2 124762820 124763062 + 1.5 NA intron (NM_130773, intron 14 of 23) intron (NM_130773, intron 14 of 23) 737654 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 215.833-2 chr10 70021044 70021393 + 1.5 NA Intergenic L1PB1|LINE|L1 -31628 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 227.5-27 chr4 151721261 151721469 + 1.5 NA intron (NM_001363341, intron 2 of 11) intron (NM_001363341, intron 2 of 11) 39642 NM_004564 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 296.833-3 chr2 111066846 111067284 + 1.5 NA intron (NM_001371254, intron 17 of 18) L1M5|LINE|L1 48523 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 355-12 chr8 78298719 78299041 + 1.5 NA Intergenic Intergenic -217460 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 285.5-5 chr13 46612620 46612957 + 1.5 NA intron (NM_001164213, intron 1 of 18) intron (NM_001164213, intron 1 of 18) 59618 NM_001164211 23143 Hs.507971 NM_015116 ENSG00000136141 LRCH1 CHDC1|NP81 leucine rich repeats and calponin homology domain containing 1 protein-coding 388.834 chr11 50655897 50656178 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 246890 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 154.5-50 chr4 37095286 37095503 + 1.5 NA Intergenic Intergenic 93615 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 268.5-3 chr18 1185897 1186153 + 1.5 NA Intergenic MER2|DNA|TcMar-Tigger 173604 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 215-20 chr2 239895981 239896266 + 1.5 NA intron (NR_136158, intron 9 of 10) MER45B|DNA|hAT-Tip100 46971 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 242-26 chr8 74904000 74904220 + 1.5 NA Intergenic MER41-int|LTR|ERV1 79576 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 199.5-12 chr14 68378401 68378673 + 1.5 NA intron (NM_133509, intron 8 of 10) MER2|DNA|TcMar-Tigger 250250 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 285.5-4 chr11 99436557 99436795 + 1.5 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -119469 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 367.5-2 chr3 17342002 17342682 + 1.5 NA intron (NM_014744, intron 13 of 21) intron (NM_014744, intron 13 of 21) 357678 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 263-14 chr7 9648092 9648280 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 13916 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 185-58 chrX 63690329 63690559 + 1.5 NA intron (NM_001353922, intron 4 of 8) L1MA4|LINE|L1 -18942 NR_138419 100874355 Hs.671524 NR_138419 ENSG00000231729 ARHGEF9-IT1 - ARHGEF9 intronic transcript 1 ncRNA 200.167-34 chr3 101364362 101364696 + 1.5 NA intron (NM_020654, intron 10 of 23) intron (NM_020654, intron 10 of 23) -43954 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 280.333-2 chr1 196635461 196635790 + 1.5 NA Intergenic L1MC3|LINE|L1 -16253 NM_001014975 3075 Hs.363396 NM_000186 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 185.666-7 chr6 13627955 13628099 + 1.5 NA intron (NM_005493, intron 12 of 13) intron (NM_005493, intron 12 of 13) 12692 NM_016167 51406 Hs.306242 NM_016167 ENSG00000225921 NOL7 C6orf90|PQBP3|RARG-1|dJ223E5.2 nucleolar protein 7 protein-coding 262.5-21 chr4 36098523 36098859 + 1.5 NA intron (NR_146894, intron 27 of 32) intron (NR_146894, intron 27 of 32) 145248 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 185.5-23 chr2 122917013 122917266 + 1.5 NA Intergenic Intergenic 156342 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 154-6 chr10 8120722 8120893 + 1.5 NA Intergenic FRAM|SINE|Alu 66119 NM_001002295 2625 Hs.524134 NM_002051 ENSG00000107485 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 202.5-14 chr2 152225193 152225379 + 1.5 NA Intergenic L1MB5|LINE|L1 -49523 NM_005843 10254 Hs.17200 NM_005843 ENSG00000115145 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule 2 protein-coding 242.5-25 chr9 27174707 27174988 + 1.5 NA intron (NM_001290077, intron 6 of 21) intron (NM_001290077, intron 6 of 21) 65706 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 171.5-18 chr14 82515394 82515617 + 1.5 NA Intergenic Intergenic -127127 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 332-3 chr14 21726604 21726934 + 1.5 NA Intergenic L2c|LINE|L2 -55752 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 341.167 chr2 180642290 180642752 + 1.5 NA Intergenic L1MA2|LINE|L1 -49583 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 208.667-40 chr7 12075680 12076132 + 1.5 NA Intergenic Intergenic -135388 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 294.5-4 chr12 69378509 69378721 + 1.5 NA intron (NM_001300950, intron 4 of 4) L1MA3|LINE|L1 18872 NM_006530 8089 Hs.4029 NM_006530 ENSG00000127337 YEATS4 4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9 YEATS domain containing 4 protein-coding 462.5 chr12 70111220 70111550 + 1.5 NA Intergenic L1MA4A|LINE|L1 -131645 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 151.5-63 chr6 70186217 70186368 + 1.5 NA intron (NM_001858, intron 46 of 50) intron (NM_001858, intron 46 of 50) 96905 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 368.666-3 chr2 86475516 86475814 + 1.5 NA intron (NM_018433, intron 12 of 25) intron (NM_018433, intron 12 of 25) 34204 NM_001146688 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 301.5-7 chr3 38244053 38244344 + 1.5 NA intron (NM_005109, intron 12 of 17) intron (NM_005109, intron 12 of 17) -21614 NM_004256 9390 Hs.225941 NM_004256 ENSG00000172940 SLC22A13 OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3 solute carrier family 22 member 13 protein-coding 316.667-4 chr14 63477080 63477578 + 1.5 NA intron (NM_001354926, intron 2 of 2) MIR|SINE|MIR 30909 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 263.833-3 chr10 113727205 113727442 + 1.5 NA intron (NM_001320911, intron 6 of 6) intron (NM_001320911, intron 6 of 6) 17978 NM_001267058 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 284-7 chr20 48692232 48692557 + 1.5 NA intron (NM_020820, intron 8 of 39) L1ME3B|LINE|L1 135605 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 334.5 chr1 116164904 116165201 + 1.5 NA Intergenic Intergenic 53297 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 268 chr10 73864881 73865177 + 1.5 NA intron (NR_160045, intron 1 of 17) MIRb|SINE|MIR 9526 NM_001367531 818 Hs.523045 NM_001222 ENSG00000148660 CAMK2G CAMK|CAMK-II|CAMKG calcium/calmodulin dependent protein kinase II gamma protein-coding 253-4 chr11 78143592 78143899 + 1.5 NA intron (NR_102280, intron 2 of 3) LOR1b|LTR|ERV1 3952 NR_102280 100289388 Hs.628183 NM_203432 ENSG00000246174 KCTD21-AS1 - KCTD21 antisense RNA 1 ncRNA 453.667 chr3 175450304 175450837 + 1.5 NA intron (NM_207015, intron 6 of 13) intron (NM_207015, intron 6 of 13) 81030 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 439.167-2 chr17 44402034 44402607 + 1.5 NA intron (NM_001002909, intron 7 of 7) AluSx1|SINE|Alu -12671 NM_000419 3674 Hs.411312 NM_000419 ENSG00000005961 ITGA2B BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GTA|HPA3|PPP1R93 integrin subunit alpha 2b protein-coding 150.5-28 chr15 48471552 48471722 + 1.5 NA intron (NM_000138, intron 35 of 65) intron (NM_000138, intron 35 of 65) 139440 NM_001948 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 326.167-3 chr10 72474434 72474726 + 1.5 NA intron (NM_001195519, intron 3 of 6) FLAM_A|SINE|Alu 49406 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 225-16 chr15 76519928 76520108 + 1.5 NA intron (NR_148227, intron 23 of 32) Tigger12A|DNA|TcMar-Tigger -66629 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 295.833-7 chr8 58399505 58399871 + 1.5 NA Intergenic LTR68|LTR|ERV1 -11576 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 198.5-42 chr8 4291771 4292011 + 1.5 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 703023 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 393.666 chr8 89639594 89640320 + 1.5 NA Intergenic L1M2|LINE|L1 117754 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 278-11 chr3 110166642 110167134 + 1.5 NA Intergenic Intergenic 564060 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 476 chr2 103627786 103628178 + 1.5 NA Intergenic L1MA7|LINE|L1 -643553 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 297.167-9 chr9 85065103 85065446 + 1.5 NA Intergenic Intergenic 359373 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 170.833-35 chr4 136271662 136271791 + 1.5 NA Intergenic L1MEc|LINE|L1 -358046 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 135.333-76 chr7 49918449 49918619 + 1.5 NA 3' UTR (NM_198570, exon 4 of 4) 3' UTR (NM_198570, exon 4 of 4) 143201 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 220.5-19 chr2 117042287 117042529 + 1.5 NA Intergenic (TATACTA)n|Simple_repeat|Simple_repeat -772283 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 161-11 chr11 39122069 39122241 + 1.5 NA Intergenic Tigger15a|DNA|TcMar-Tigger 473297 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 234.167-10 chr2 148126652 148126930 + 1.5 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -105187 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 165.5-34 chr2 37730576 37730719 + 1.5 NA Intergenic Intergenic -58112 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 119.833-39 chr2 53866429 53866732 + 1.5 NA intron (NM_014614, intron 45 of 46) intron (NM_014614, intron 45 of 46) -6547 NM_001164165 100302652 Hs.40763 NM_001164165 ENSG00000270898 GPR75-ASB3 ASB-3|ASB3 GPR75-ASB3 readthrough protein-coding 274.167 chr10 43880417 43880724 + 1.5 NA intron (NR_038268, intron 4 of 4) MIRb|SINE|MIR 21159 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 172.333-17 chr11 90242174 90242465 + 1.5 NA Intergenic L1MEc|LINE|L1 -8913 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 193-33 chr3 175231020 175231279 + 1.5 NA intron (NM_207015, intron 2 of 13) L1ME3F|LINE|L1 39947 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 221.333-31 chr8 94275609 94275852 + 1.5 NA Intergenic Intergenic -13411 NM_181702 2669 Hs.654463 NM_005261 ENSG00000164949 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 199.5-21 chr2 240938971 240939154 + 1.5 NA intron (NM_001351305, intron 14 of 31) L1ME2|LINE|L1 28389 NR_033841 200772 Hs.647893 NR_033841 ENSG00000233392 LOC200772 - uncharacterized LOC200772 ncRNA 184.833-29 chr6 142605143 142605420 + 1.5 NA intron (NR_027311, intron 1 of 2) L2c|LINE|L2 32555 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 364-2 chr4 62456626 62457279 + 1.5 NA Intergenic Charlie25|DNA|hAT-Charlie -295187 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 445.5 chr2 119414003 119414566 + 1.5 NA Intergenic Tigger4|DNA|TcMar-Tigger -17570 NM_183240 140738 Hs.26216 NM_183240 ENSG00000171227 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 230.167-8 chr18 11020057 11020364 + 1.5 NA intron (NM_022068, intron 2 of 51) intron (NM_022068, intron 2 of 51) 128552 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 172.5-64 chr9 30239358 30239524 + 1.5 NA Intergenic Intergenic 169013 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 186.667-38 chr2 99732656 99732895 + 1.5 NA intron (NM_001025108, intron 9 of 23) L1ME3D|LINE|L1 -242758 NM_001321454 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 274.833-8 chr7 13837784 13838007 + 1.5 NA Intergenic Intergenic 148619 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 187.5-46 chr6 61817769 61817909 + 1.5 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 243709 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 147-31 chr2 33631052 33631222 + 1.5 NA Intergenic HAL1ME|LINE|L1 -31775 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 376.5-7 chr2 144235137 144235513 + 1.5 NA intron (NM_001354351, intron 4 of 15) intron (NM_001354351, intron 4 of 15) 2014 NM_024659 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 218.667-39 chr7 30489821 30490119 + 1.5 NA Intergenic L1MB5|LINE|L1 -11104 NR_149002 10392 Hs.405153 NM_006092 ENSG00000106100 NOD1 CARD4|CLR7.1|NLRC1 nucleotide binding oligomerization domain containing 1 protein-coding 292.5-17 chr8 135320664 135320898 + 1.5 NA Intergenic Intergenic 86650 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 206.167-15 chr22 47326978 47327145 + 1.5 NA Intergenic MER1B|DNA|hAT-Charlie -18510 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 363.333-6 chr2 179573729 179574055 + 1.5 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) 7779 NM_001352814 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 245.5-29 chr8 70193293 70193549 + 1.5 NA intron (NM_001321711, intron 4 of 21) intron (NM_001321711, intron 4 of 21) -122169 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 399.167-2 chr8 125280524 125280832 + 1.5 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -149680 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 260.333-9 chr17 60452279 60452558 + 1.5 NA intron (NM_006380, intron 11 of 12) intron (NM_006380, intron 11 of 12) 29929 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 293-4 chr5 119224594 119224835 + 1.5 NA exon (NM_001290322, exon 37 of 43) exon (NM_001290322, exon 37 of 43) -44045 NM_001286815 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 454.999-2 chr7 30519968 30520518 + 1.5 NA Intergenic L2c|LINE|L2 -15402 NM_001199816 79017 Hs.530024 NM_024051 ENSG00000006625 GGCT C7orf24|CRF21|GCTG|GGC gamma-glutamylcyclotransferase protein-coding 246-20 chr9 26737262 26737539 + 1.5 NA Intergenic L1PA15|LINE|L1 155402 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 401-2 chr6 11907589 11908021 + 1.5 NA Intergenic Intergenic 93439 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 166.5-30 chr2 21956594 21956839 + 1.5 NA Intergenic MER58A|DNA|hAT-Charlie -246064 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 305.167-10 chr9 74406707 74406999 + 1.5 NA Intergenic Intergenic 35322 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 394.667-5 chr5 165168710 165169025 + 1.5 NA Intergenic Intergenic 698588 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 361.667-5 chr3 8600725 8601124 + 1.5 NA Intergenic MIRb|SINE|MIR 29142 NR_024065 29931 Hs.433151 NM_013343 LINC00312 ERR-10|ERR10|LMCD1DN|LOH3CR2A|NAG-7|NAG7|NCRNA00312 long intergenic non-protein coding RNA 312 ncRNA 345.167-5 chr3 81278441 81278864 + 1.5 NA Intergenic Intergenic 284784 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 343.5 chr1 10305926 10306240 + 1.5 NA 3' UTR (NM_183416, exon 21 of 21) 3' UTR (NM_183416, exon 21 of 21) 7117 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 320.167-4 chr4 61935399 61935650 + 1.5 NA intron (NM_001371343, intron 13 of 23) intron (NM_001371343, intron 13 of 23) 226241 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 228.333-10 chr17 10740352 10740665 + 1.5 NA intron (NR_073456, intron 2 of 3) L1ME2z|LINE|L1 -10179 NM_001330140 388335 Hs.462230 NM_001004313 ENSG00000187824 TMEM220 - transmembrane protein 220 protein-coding 147.334-2 chr1 222413852 222414057 + 1.5 NA Intergenic Intergenic 134150 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 242.667-25 chr8 81126971 81127200 + 1.5 NA Intergenic MIRc|SINE|MIR -15017 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 171.666-4 chr7 123509997 123510135 + 1.5 NA intron (NR_104245, intron 2 of 11) intron (NR_104245, intron 2 of 11) 22882 NR_104244 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 289.5-12 chr4 121119080 121119439 + 1.5 NA Intergenic Intergenic 45062 NM_024873 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 345.167-3 chr19 37355014 37355313 + 1.5 NA intron (NM_001329779, intron 4 of 4) (GTATAT)n|Simple_repeat|Simple_repeat -15936 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 347.334 chr12 12119111 12119501 + 1.5 NA 3' UTR (NM_002336, exon 23 of 23).2 3' UTR (NM_002336, exon 23 of 23).2 7354 NR_036262 100422885 NR_036262 ENSG00000283498 MIR1244-2 - microRNA 1244-2 ncRNA 333.5-2 chr2 44573572 44573934 + 1.5 NA intron (NM_024766, intron 3 of 10) L1M5|LINE|L1 211806 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 127-64 chr3 40604806 40604903 + 1.5 NA Intergenic MIRb|SINE|MIR 79894 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 360.833-3 chr17 62052569 62053080 + 1.5 NA intron (NM_005121, intron 2 of 29) intron (NM_005121, intron 2 of 29) 12454 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 488.167 chr1 178465024 178465485 + 1.5 NA intron (NM_004841, intron 13 of 15) intron (NM_004841, intron 13 of 15) -47855 NM_001170723 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 361.167-3 chr12 3799506 3799995 + 1.5 NA Intergenic L1ME4a|LINE|L1 -46641 NM_001144958 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 231.667-6 chr11 120912754 120912928 + 1.5 NA intron (NM_001282470, intron 12 of 19) intron (NM_001282470, intron 12 of 19) -18044 NR_132790 101929227 Hs.627156 NR_132790 ENSG00000250493 LOC101929227 - uncharacterized LOC101929227 ncRNA 224.833-13 chr5 84267464 84267664 + 1.5 NA intron (NM_001278642, intron 1 of 9) intron (NM_001278642, intron 1 of 9) 117303 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 239.166 chr2 35461435 35461625 + 1.5 NA Intergenic Intergenic -9875 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 290.833-8 chr8 136181923 136182375 + 1.5 NA Intergenic L2c|LINE|L2 -348649 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 449.167 chr10 90666044 90666693 + 1.5 NA Intergenic THE1D|LTR|ERVL-MaLR -125563 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 291 chr1 160772680 160772899 + 1.5 NA Intergenic Intergenic -23385 NM_001033667 4063 Hs.403857 NM_002348 ENSG00000122224 LY9 CD229|SLAMF3|hly9|mLY9 lymphocyte antigen 9 protein-coding 232.5-28 chr4 99017198 99017529 + 1.5 NA intron (NM_015143, intron 1 of 10) HERVIP10B3-int|LTR|ERV1 19976 NR_037455 100500867 NR_037455 ENSG00000265213 MIR3684 - microRNA 3684 ncRNA 372.167 chr2 39223059 39223329 + 1.5 NA intron (NM_001009565, intron 2 of 7) L1ME4a|LINE|L1 6394 NM_001009565 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 284.5-5 chr16 68379362 68379651 + 1.5 NA intron (NM_018667, intron 2 of 8) intron (NM_018667, intron 2 of 8) 68392 NM_001290018 54496 Hs.640229 NM_019023 ENSG00000132600 PRMT7 SBIDDS protein arginine methyltransferase 7 protein-coding 139-26 chr2 55186878 55187011 + 1.5 NA intron (NR_148539, intron 1 of 3) L1ME3B|LINE|L1 -44959 NM_001135592 6233 Hs.311640 NM_002954 ENSG00000143947 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 444.167-2 chr11 108380494 108381126 + 1.5 NA intron (NR_147053, intron 10 of 12) ERVL-E-int|LTR|ERVL 86719 NM_001351110 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 322-2 chr10 33643328 33643653 + 1.5 NA Intergenic (AATG)n|Simple_repeat|Simple_repeat 129190 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 169.833-15 chr14 84799670 84799849 + 1.5 NA Intergenic Intergenic -472173 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 122.5-11 chr10 33907727 33907911 + 1.5 NA Intergenic L1MEc|LINE|L1 -135139 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 283.833-2 chr1 195963361 195963639 + 1.5 NA Intergenic Intergenic 125215 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 487.5 chr8 72743389 72743795 + 1.5 NA intron (NR_110656, intron 1 of 2) intron (NR_110656, intron 1 of 2) 11547 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 241.333-14 chr18 22788122 22788365 + 1.5 NA Intergenic Tigger6a|DNA|TcMar-Tigger -1406 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 339.166 chr12 64101541 64101971 + 1.5 NA intron (NM_001346201, intron 15 of 21) intron (NM_001346201, intron 15 of 21) 120540 NM_001300941 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 270.167 chr1 78191704 78191911 + 1.5 NA Intergenic L1PA11|LINE|L1 -37792 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 186.167-10 chr11 74112826 74113006 + 1.5 NA intron (NM_001286577, intron 11 of 32) L1MB7|LINE|L1 58086 NM_015531 26005 Hs.557938 NM_015531 ENSG00000168014 C2CD3 OFD14 C2 domain containing 3 centriole elongation regulator protein-coding 176.667-43 chr20 48175860 48176023 + 1.5 NA Intergenic Intergenic -183970 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 270.833-8 chr17 55780188 55780382 + 1.5 NA intron (NM_001330378, intron 5 of 5) intron (NM_001330378, intron 5 of 5) 29180 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 154-23 chr14 55220651 55220809 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 -29145 NM_001146015 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 270.667-12 chr20 3607823 3608156 + 1.5 NA intron (NM_001323332, intron 24 of 25) L1MA4|LINE|L1 55410 NM_145762 64096 Hs.302025 NM_022139 ENSG00000125861 GFRA4 - GDNF family receptor alpha 4 protein-coding 387.333-4 chr4 67680166 67680504 + 1.5 NA intron (NM_018227, intron 4 of 32) L1MC5|LINE|L1 20820 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 258.5-4 chr10 59873730 59874046 + 1.5 NA intron (NM_005436, intron 1 of 8) intron (NM_005436, intron 1 of 8) 32668 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 190.167-7 chr12 23776475 23776653 + 1.5 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) 173106 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 530.334 chr2 118216389 118217048 + 1.5 NA Intergenic L1MD1|LINE|L1 -30332 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 151.5-37 chr2 68581090 68581222 + 1.5 NA TTS (NM_173545) TTS (NM_173545) -62432 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 322.167-5 chr2 103865451 103865763 + 1.5 NA Intergenic MER53|DNA|hAT 542725 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 125.667-20 chr11 109523470 109523638 + 1.5 NA Intergenic Intergenic 101364 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 160.5-27 chr2 41142939 41143150 + 1.5 NA Intergenic Intergenic -630609 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 410.333-2 chr8 132068855 132069440 + 1.5 NA intron (NM_001145095, intron 14 of 15) L2b|LINE|L2 -9765 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 267-6 chr2 159456074 159456340 + 1.5 NA intron (NM_001329858, intron 3 of 36) intron (NM_001329858, intron 3 of 36) -159087 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 185.167-31 chr4 63489687 63489914 + 1.5 NA Intergenic Intergenic 919650 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 350.333-3 chr18 66174672 66175163 + 1.5 NA Intergenic Intergenic 423905 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 284.834-5 chr20 41502720 41503263 + 1.5 NA intron (NM_032221, intron 5 of 36) AluSz|SINE|Alu 115386 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 375.833 chr11 40233520 40233870 + 1.5 NA intron (NM_020929, intron 3 of 4) intron (NM_020929, intron 3 of 4) 59435 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 209 chr1 72268114 72268316 + 1.5 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 14324 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 182.833-43 chr5 92354965 92355236 + 1.5 NA Intergenic L2b|LINE|L2 -971783 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 386-6 chr8 64591476 64591810 + 1.5 NA 3' UTR (NM_004820, exon 6 of 6) 3' UTR (NM_004820, exon 6 of 6) -9751 NR_152770 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 275-16 chr9 83797319 83797635 + 1.5 NA intron (NM_025211, intron 4 of 12) intron (NM_025211, intron 4 of 12) 20292 NM_025211 80318 Hs.522255 NM_025211 ENSG00000165113 GKAP1 FKSG21|GKAP42 G kinase anchoring protein 1 protein-coding 290.167-11 chr5 93514479 93514768 + 1.5 NA intron (NR_109825, intron 5 of 8) intron (NR_109825, intron 5 of 8) 56720 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 238-15 chr22 46831044 46831208 + 1.5 NA intron (NM_001284305, intron 4 of 12) intron (NM_001284305, intron 4 of 12) 57199 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 355-5 chr16 66755265 66755531 + 1.5 NA TTS (NR_133569) TTS (NR_133569) -3570 NR_136658 1783 Hs.369068 NM_006141 ENSG00000135720 DYNC1LI2 DNCLI2|LIC2 dynein cytoplasmic 1 light intermediate chain 2 protein-coding 245.667-23 chr20 63045734 63046019 + 1.5 NA intron (NR_033369, intron 1 of 5) intron (NR_033369, intron 1 of 5) 7865 NR_033369 100144597 Hs.636485 NR_033369 ENSG00000237119 LINC01056 - long intergenic non-protein coding RNA 1056 ncRNA 271-2 chr14 102794844 102795051 + 1.5 NA intron (NM_001199427, intron 1 of 7) intron (NM_001199427, intron 1 of 7) 17468 NM_145725 7187 Hs.510528 NM_003300 ENSG00000131323 TRAF3 CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118 TNF receptor associated factor 3 protein-coding 346.001 chr4 107245689 107245973 + 1.5 NA Intergenic Intergenic -209518 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 269.333-4 chr11 132613664 132613987 + 1.5 NA intron (NM_002545, intron 2 of 6) intron (NM_002545, intron 2 of 6) 329523 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 303-12 chrX 52593998 52594480 + 1.5 NA Intergenic LTR75B|LTR|ERVL -28696 NR_027250 280659 Hs.694472 NM_174961 SSX8P SSX8 SSX family member 8, pseudogene pseudo 234.5-29 chr6 136061795 136062094 + 1.5 NA intron (NR_149042, intron 3 of 3) intron (NR_149042, intron 3 of 3) 10883 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 205.667-39 chr2 217307541 217307688 + 1.5 NA intron (NR_133642, intron 4 of 5) L3|LINE|CR1 24881 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 225-21 chr2 103683742 103683986 + 1.5 NA Intergenic Charlie2b|DNA|hAT-Charlie -699435 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 203.5-14 chr14 58699358 58699636 + 1.5 NA Intergenic L1MC4|LINE|L1 60660 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 369.333 chr14 45599954 45600304 + 1.5 NA Intergenic Intergenic 115473 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 243-17 chr2 74078018 74078341 + 1.5 NA intron (NM_001287491, intron 5 of 11) intron (NM_001287491, intron 5 of 11) 69733 NM_001035505 388962 Hs.61472 NM_212552 ENSG00000163170 BOLA3 MMDS2 bolA family member 3 protein-coding 207.833-7 chr11 78700968 78701223 + 1.5 NA intron (NM_001098816, intron 28 of 33) Tigger15a|DNA|TcMar-Tigger -126231 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 118.333-81 chr4 55071128 55071231 + 1.5 NA Intergenic Intergenic 54416 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 264-22 chr8 14233277 14233518 + 1.5 NA intron (NM_139167, intron 4 of 7) intron (NM_139167, intron 4 of 7) 603707 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 397.333-5 chrX 93815441 93815728 + 1.5 NA Intergenic L1MA2|LINE|L1 141378 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 232.333-10 chr14 56550756 56550986 + 1.5 NA non-coding (NR_135241, exon 2 of 2) non-coding (NR_135241, exon 2 of 2) -28927 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 164.833 chr1 31282046 31282191 + 1.5 NA intron (NM_004814, intron 4 of 9) L1M4|LINE|L1 14670 NM_004814 9410 Hs.33962 NM_004814 ENSG00000060688 SNRNP40 40K|HPRP8BP|PRP8BP|PRPF8BP|SPF38|WDR57 small nuclear ribonucleoprotein U5 subunit 40 protein-coding 235.167-2 chr11 6166971 6167272 + 1.5 NA Intergenic Intergenic 3205 NM_001004052 255725 Hs.690457 NM_001004052 ENSG00000255307 OR52B2 OR11-70 olfactory receptor family 52 subfamily B member 2 protein-coding 278.5-8 chr3 23437863 23438105 + 1.5 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 234657 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 159.667-29 chr12 103069593 103069786 + 1.5 NA Intergenic L1MEg|LINE|L1 -82153 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 265.333-20 chr7 124226954 124227278 + 1.5 NA Intergenic LTR37B|LTR|ERV1 124980 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 240.667-18 chr2 37162946 37163343 + 1.5 NA Intergenic L1ME3C|LINE|L1 -6097 NM_002759 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 309.5-9 chr6 95970786 95971080 + 1.5 NA Intergenic L1MA9|LINE|L1 -45041 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 214.5-35 chr6 110141200 110141670 + 1.5 NA intron (NM_001024936, intron 1 of 8) L2c|LINE|L2 38235 NM_003931 8936 Hs.75850 NM_003931 ENSG00000112290 WASF1 SCAR1|WAVE|WAVE1 WASP family member 1 protein-coding 301-6 chr5 86118456 86118701 + 1.5 NA Intergenic Intergenic -163866 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 161.5-41 chr6 90013089 90013303 + 1.5 NA intron (NM_021813, intron 5 of 8) L1ME1|LINE|L1 118727 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 283.167-4 chr17 71848435 71849018 + 1.5 NA Intergenic Intergenic 177253 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 184.833-18 chr21 19745609 19745789 + 1.5 NA Intergenic L1MC4a|LINE|L1 154056 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 334.833-8 chrX 57782795 57783055 + 1.5 NA Intergenic MER4B-int|LTR|ERV1 -102665 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 362.667 chr8 137930033 137930611 + 1.5 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 153223 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 146.333-47 chr2 37070105 37070235 + 1.5 NA intron (NM_019024, intron 7 of 35) AluSx|SINE|Alu 14202 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 506 chr11 8537516 8538025 + 1.5 NA intron (NM_030906, intron 1 of 13) AluSx|SINE|Alu 56206 NM_001352397 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 308-8 chr7 47006768 47007109 + 1.5 NA Intergenic L1MC2|LINE|L1 -309816 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 411.5 chr1 115830435 115830918 + 1.5 NA Intergenic MIR|SINE|MIR 10027 NM_001111061 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 181.167-33 chr8 92636743 92636931 + 1.5 NA intron (NR_125827, intron 2 of 4) intron (NR_125827, intron 2 of 4) 18657 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 333.666-3 chr5 13194935 13195393 + 1.5 NA Intergenic Intergenic -162278 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 388-4 chr5 12790603 12791240 + 1.5 NA intron (NR_033383, intron 3 of 3) MER87B|LTR|ERV1 123062 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 302-2 chr1 92603161 92603405 + 1.5 NA intron (NM_001350198, intron 18 of 19) L1MB4|LINE|L1 -116358 NM_005263 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 453-2 chr6 50124286 50124772 + 1.5 NA Intergenic Intergenic -74600 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 266.5-4 chr14 59500930 59501211 + 1.5 NA intron (NM_001284204, intron 5 of 5) intron (NM_001284204, intron 5 of 5) 16553 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 188.667-24 chr17 70912298 70912499 + 1.5 NA Intergenic MER30|DNA|hAT-Charlie 289781 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 173-28 chr2 82385524 82385685 + 1.5 NA Intergenic Intergenic -471199 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 206.5-22 chr4 113019630 113019802 + 1.5 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) -29698 NM_001354265 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 352-3 chr6 162089177 162089568 + 1.5 NA intron (NM_004562, intron 4 of 11) L1MB7|LINE|L1 618395 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 335.333-2 chr15 91437087 91437337 + 1.5 NA Intergenic Intergenic -26127 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 350-11 chrX 83218890 83219277 + 1.5 NA Intergenic L1M3|LINE|L1 -289207 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 159.5-33 chr22 34940504 34940672 + 1.5 NA intron (NR_138042, intron 1 of 4) MIRb|SINE|MIR 57328 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 347.666 chr18 2785577 2785991 + 1.5 NA intron (NM_015295, intron 45 of 47) L1MB2|LINE|L1 -61222 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 198.167-38 chr8 128083001 128083216 + 1.5 NA intron (NR_003367, intron 6 of 8) MIR|SINE|MIR 33956 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 289-6 chr20 42124439 42124720 + 1.5 NA intron (NM_133170, intron 20 of 31) intron (NM_133170, intron 20 of 31) -506202 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 245-15 chr5 104949043 104949330 + 1.5 NA Intergenic Intergenic -150288 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 326.5-8 chr8 135207764 135208138 + 1.5 NA Intergenic Intergenic -26180 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 331 chr10 52333173 52334051 + 1.5 NA Intergenic Intergenic 19331 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 215.333-6 chr10 115114896 115115296 + 1.5 NA intron (NR_074088, intron 2 of 9) L1MA7|LINE|L1 21731 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 220.5-10 chr14 45092764 45092991 + 1.5 NA intron (NM_017922, intron 1 of 13) intron (NM_017922, intron 1 of 13) 8761 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 200.167-12 chr12 65429059 65429277 + 1.5 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 128143 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 305.667-14 chr8 83367850 83368115 + 1.5 NA Intergenic Intergenic -35776 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 222.167-35 chr8 126686813 126687096 + 1.5 NA Intergenic L1ME3C|LINE|L1 -128476 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 186-51 chr7 33010202 33010412 + 1.5 NA Intergenic L2a|LINE|L2 30599 NM_016489 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 527.167 chr3 48306541 48307070 + 1.5 NA TTS (NM_001080525) TTS (NM_001080525) -5120 NM_001308435 10201 Hs.465558 NM_005793 ENSG00000172113 NME6 IPIA-ALPHA|NDK 6|NM23-H6 NME/NM23 nucleoside diphosphate kinase 6 protein-coding 137.5-72 chr4 86807279 86807408 + 1.5 NA intron (NM_080685, intron 44 of 47) intron (NM_080685, intron 44 of 47) 42041 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 163.5-74 chr8 82350568 82350786 + 1.5 NA Intergenic Intergenic -508391 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 406.5-2 chr5 45334090 45334584 + 1.5 NA intron (NM_021072, intron 5 of 7) intron (NM_021072, intron 5 of 7) 362043 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 181.5-25 chr2 52797331 52797595 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -94848 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 187.333-15 chr12 33049974 33050159 + 1.5 NA Intergenic L2b|LINE|L2 -153220 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 175-65 chr9 35277315 35277491 + 1.5 NA intron (NM_006377, intron 7 of 38) intron (NM_006377, intron 7 of 38) -64493 NM_001371188 340.667-6 chr3 158083038 158083488 + 1.5 NA Intergenic Intergenic 22900 NM_006884 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 348.166 chr10 53282578 53282862 + 1.5 NA Intergenic Intergenic -511020 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 226.167-5 chr11 68775286 68775515 + 1.5 NA exon (NM_001876, exon 13 of 19) exon (NM_001876, exon 13 of 19) -23880 NM_004923 9633 Hs.145932 NM_004923 ENSG00000132749 TESMIN CXCDC2|MTL5|MTLT testis expressed metallothionein like protein protein-coding 223.5 chr1 30754115 30754380 + 1.5 NA intron (NM_006762, intron 1 of 7) intron (NM_006762, intron 1 of 7) 3527 NM_006762 7805 Hs.371021 NM_006762 ENSG00000162511 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 213.667-14 chr18 6698131 6698355 + 1.5 NA Intergenic L1ME1|LINE|L1 -31473 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 280.833-3 chr17 54667819 54668422 + 1.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR -232571 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 151-53 chr4 65006801 65006904 + 1.5 NA Intergenic Intergenic -2352 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 318.833-6 chr2 15931242 15931508 + 1.5 NA intron (NR_125783, intron 2 of 2) intron (NR_125783, intron 2 of 2) -9175 NM_005378 4613 Hs.25960 NM_005378 ENSG00000134323 MYCN MODED|N-myc|NMYC|ODED|bHLHe37 MYCN proto-oncogene, bHLH transcription factor protein-coding 315.501-2 chr2 52226924 52227466 + 1.5 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -143453 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 236.833-3 chr11 81879859 81880292 + 1.5 NA non-coding (NR_120571, exon 8 of 8) non-coding (NR_120571, exon 8 of 8) 10761 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 173.5-8 chr10 6506969 6507192 + 1.5 NA intron (NM_001282645, intron 3 of 16) intron (NM_001282645, intron 3 of 16) 73196 NM_006257 5588 Hs.498570 NM_006257 ENSG00000065675 PRKCQ PRKCT|nPKC-theta protein kinase C theta protein-coding 296.5-3 chr14 27708022 27708249 + 1.5 NA Intergenic L1ME3A|LINE|L1 -34914 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 211.333-48 chr6 137017706 137018073 + 1.5 NA intron (NM_001278724, intron 1 of 5) intron (NM_001278724, intron 1 of 5) -24658 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 277.167-2 chr14 66574369 66574602 + 1.5 NA intron (NM_001024218, intron 1 of 21) L1MA8|LINE|L1 67078 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 122.167-39 chr20 9259290 9259523 + 1.5 NA intron (NM_182797, intron 1 of 35) L1MEi|LINE|L1 42016 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 243.834-4 chr18 44461546 44461771 + 1.5 NA intron (NR_110792, intron 2 of 4) intron (NR_110792, intron 2 of 4) 70039 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 341.667-4 chr8 59556635 59557083 + 1.5 NA Intergenic MIR3|SINE|MIR 437649 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 280.5-11 chr6 141372758 141372994 + 1.5 NA Intergenic Intergenic 689062 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 196-65 chr8 136341969 136342192 + 1.5 NA Intergenic L1MA4|LINE|L1 -188718 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 318.334-6 chr4 143498973 143499214 + 1.5 NA Intergenic Intergenic -14609 NM_003601 8467 Hs.558422 NM_003601 ENSG00000153147 SMARCA5 ISWI|SNF2H|WCRF135|hISWI|hSNF2H SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein-coding 370.167-3 chr15 68469030 68469548 + 1.5 NA Intergenic Intergenic -37126 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 196-60 chr8 70351305 70351505 + 1.5 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 51985 NM_001321713 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 341.167-2 chr2 207063288 207063681 + 1.5 NA Intergenic Intergenic 46589 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 175-6 chr1 119292159 119292358 + 1.5 NA Intergenic Intergenic -35994 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 311.5-8 chr20 58034299 58034689 + 1.5 NA Intergenic L1M8|LINE|L1 30590 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 310-9 chr3 107845056 107845402 + 1.5 NA intron (NR_024276, intron 5 of 7) intron (NR_024276, intron 5 of 7) 32839 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 224-36 chr7 53106548 53106848 + 1.5 NA Intergenic Intergenic 71065 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 185.667-3 chr1 165836577 165836762 + 1.5 NA intron (NM_012474, intron 1 of 6) Charlie2a|DNA|hAT-Charlie 9055 NM_001363568 7371 Hs.458360 NM_012474 ENSG00000143179 UCK2 TSA903|UK|UMPK uridine-cytidine kinase 2 protein-coding 286.834 chr12 5427596 5427961 + 1.5 NA Intergenic MIRb|SINE|MIR -4330 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 284.167-2 chr12 18315955 18316184 + 1.5 NA intron (NM_001288774, intron 6 of 32) MIR|SINE|MIR 54529 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 117-111 chr7 52432718 52432849 + 1.5 NA Intergenic Intergenic -602850 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 264.167-17 chr4 22486485 22486709 + 1.5 NA intron (NM_145290, intron 1 of 18) intron (NM_145290, intron 1 of 18) -28715 NR_162129 113219450 NR_162129 MIR12115 - microRNA 12115 ncRNA 364.5-2 chr12 12893973 12894535 + 1.5 NA intron (NM_003979, intron 1 of 3) intron (NM_003979, intron 1 of 3) 3232 NM_003979 9052 Hs.631733 NM_003979 ENSG00000013588 GPRC5A GPCR5A|PEIG-1|RAI3|RAIG1|TIG1 G protein-coupled receptor class C group 5 member A protein-coding 189-36 chr4 30726800 30727031 + 1.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 6546 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 313-5 chr6 135342633 135342994 + 1.5 NA intron (NM_017651, intron 23 of 27) L1MB7|LINE|L1 103653 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 432 chr14 44431709 44432013 + 1.5 NA Intergenic L2|LINE|L2 75422 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 350.667-6 chr22 41250869 41251215 + 1.5 NA exon (NM_001278651, exon 14 of 17) exon (NM_001278651, exon 14 of 17) 2008 NR_106949 102466758 NR_106949 ENSG00000274552 MIR6889 hsa-mir-6889 microRNA 6889 ncRNA 193-15 chr12 121864289 121864504 + 1.5 NA intron (NM_001171993, intron 1 of 15) AluJr|SINE|Alu -5537 NM_002150 3242 Hs.2899 NM_002150 ENSG00000158104 HPD 4-HPPD|4HPPD|GLOD3|HPPDASE|PPD 4-hydroxyphenylpyruvate dioxygenase protein-coding 335.5 chr1 111272016 111272271 + 1.5 NA Intergenic L4_A_Mam|LINE|RTE-X -8381 NR_003928 149620 Hs.736960 NM_001013621 ENSG00000203878 CHIAP2 - chitinase, acidic pseudogene 2 pseudo 166.833-39 chr7 8471856 8472127 + 1.5 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 38382 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 181.667-67 chr8 77873003 77873325 + 1.5 NA Intergenic L1MEg|LINE|L1 422467 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 443.333-3 chr4 45416155 45416832 + 1.5 NA Intergenic ERVL-B4-int|LTR|ERVL -689859 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 225.5-32 chr20 22468653 22468870 + 1.5 NA Intergenic Intergenic -48118 NR_027089 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 301.5-6 chr3 13597208 13597439 + 1.5 NA intron (NM_001004019, intron 2 of 17) intron (NM_001004019, intron 2 of 17) -21058 NR_132775 106635526 NR_132775 SNORA93 - small nucleolar RNA, H/ACA box 93 snoRNA 204.5-47 chrX 77817038 77817189 + 1.5 NA Intergenic Intergenic -30897 NM_000489 546 Hs.533526 NM_000489 ENSG00000085224 ATRX JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX ATRX chromatin remodeler protein-coding 134.667-99 chr7 47091946 47092088 + 1.5 NA Intergenic L1MA5A|LINE|L1 372786 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 298-6 chr3 81007010 81007236 + 1.5 NA intron (NR_132411, intron 1 of 1) intron (NR_132411, intron 1 of 1) 13255 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 402.667-2 chr21 29200130 29200556 + 1.5 NA intron (NR_027072, intron 1 of 1) L1M4|LINE|L1 6849 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 317-2 chr1 113739673 113739929 + 1.5 NA intron (NM_001323043, intron 3 of 18) L1MA5|LINE|L1 19354 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 283.5 chr10 46531056 46531465 + 1.5 NA Intergenic L1MC4|LINE|L1 24811 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 210-28 chr4 101690914 101691081 + 1.5 NA Intergenic Intergenic -99610 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 315-8 chr5 72850038 72850367 + 1.5 NA intron (NM_001364293, intron 2 of 24) intron (NM_001364293, intron 2 of 24) 2063 NM_153188 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 195-15 chr2 33564581 33564874 + 1.5 NA TTS (NM_001139488) TTS (NM_001139488) 4703 NR_146505 105374454 NR_146505 LOC105374454 - uncharacterized LOC105374454 ncRNA 284.5-2 chr1 73256397 73256709 + 1.5 NA Intergenic MER53|DNA|hAT -49617 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 223.499 chr1 116045886 116046091 + 1.5 NA intron (NM_018420, intron 8 of 11) L1MEc|LINE|L1 -65767 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 340.333-5 chr12 126147158 126147587 + 1.5 NA Intergenic Intergenic 51380 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 213.167-23 chr5 71700886 71701208 + 1.5 NA Intergenic MIR|SINE|MIR -18228 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 325.499 chr3 68229010 68229327 + 1.5 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 224921 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 150.333-63 chr22 35387973 35388209 + 1.5 NA intron (NM_002133, intron 3 of 4) AluJb|SINE|Alu 6995 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 341.5-6 chr5 36342438 36342981 + 1.5 NA Intergenic L1MEc|LINE|L1 -40807 NM_001323276 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 205.5-9 chr16 13715795 13715967 + 1.5 NA Intergenic Intergenic -204276 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 182.5-4 chr10 8820934 8821143 + 1.5 NA Intergenic MIRc|SINE|MIR -76951 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 370-6 chr8 27625763 27626116 + 1.5 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -7963 NM_016240 51435 Hs.128856 NM_016240 ENSG00000168077 SCARA3 APC7|CSR|CSR1|MSLR1|MSRL1 scavenger receptor class A member 3 protein-coding 224.666-2 chr14 53388120 53388291 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie 234851 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 320.333-3 chr12 63063202 63063589 + 1.5 NA Intergenic Intergenic 89415 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 374.666-2 chr1 239017594 239018019 + 1.5 NA Intergenic Intergenic -368762 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 470.833 chr14 70897252 70897905 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -9881 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 247.333-30 chr8 136582288 136582603 + 1.5 NA intron (NR_147196, intron 2 of 5) L1M5|LINE|L1 51647 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 453.166 chr5 39008015 39008573 + 1.5 NA intron (NM_001285439, intron 3 of 38) intron (NM_001285439, intron 3 of 38) 66105 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 276.5-3 chr12 12836226 12836487 + 1.5 NA Intergenic Intergenic 23010 NM_016355 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 236.5-8 chr10 68602428 68602770 + 1.5 NA intron (NM_030625, intron 3 of 11) intron (NM_030625, intron 3 of 11) 42262 NM_030625 80312 Hs.258855 NM_030625 ENSG00000138336 TET1 CXXC6|LCX|bA119F7.1 tet methylcytosine dioxygenase 1 protein-coding 238.333-14 chr14 72476160 72476390 + 1.5 NA intron (NM_001370286, intron 10 of 16) intron (NM_001370286, intron 10 of 16) -40545 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 125.167-21 chr14 31069427 31069530 + 1.5 NA intron (NM_001128126, intron 2 of 5) intron (NM_001128126, intron 2 of 5) 42835 NM_001254728 11154 Hs.293411 NM_007077 ENSG00000100478 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor related protein complex 4 subunit sigma 1 protein-coding 209-28 chr21 15462125 15462303 + 1.5 NA Intergenic Intergenic -267720 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 158-6 chr1 240728798 240728985 + 1.5 NA Intergenic Intergenic -116736 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 350.5-2 chr2 79332799 79333047 + 1.5 NA Intergenic Intergenic 167921 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 269.833 chr1 163777158 163777620 + 1.5 NA Intergenic Intergenic -354198 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 199.333-32 chr4 73747661 73748042 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 7282 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 196.333-34 chr4 106390497 106390679 + 1.5 NA Intergenic Intergenic -23153 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 323.5-4 chr4 54865968 54866252 + 1.5 NA Intergenic MIR|SINE|MIR 208182 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 280-5 chr12 12222017 12222268 + 1.5 NA intron (NM_002336, intron 2 of 22).2 intron (NM_002336, intron 2 of 22).2 44902 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 398.833 chr9 80008410 80008909 + 1.5 NA intron (NR_121212, intron 3 of 4) L1MB7|LINE|L1 33636 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 276.333-17 chr5 129695490 129695785 + 1.5 NA intron (NM_133638, intron 19 of 22) intron (NM_133638, intron 19 of 22) -52457 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 296-15 chr7 79003116 79003322 + 1.5 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -5769 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 215.5-43 chr9 98213507 98213791 + 1.5 NA promoter-TSS (NM_001267572) promoter-TSS (NM_001267572) -98 NM_001267572 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 479.666 chr10 39331945 39332282 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 635517 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 383.5 chr11 21170538 21170977 + 1.5 NA intron (NM_201551, intron 13 of 18) L3|LINE|CR1 501171 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 212.5-35 chr9 109538930 109539149 + 1.5 NA Intergenic MIRc|SINE|MIR -27494 NR_037493 100500898 NR_037493 ENSG00000263861 MIR3927 - microRNA 3927 ncRNA 286.167-9 chr4 128487307 128487764 + 1.5 NA intron (NR_125882, intron 6 of 8) L1PA15|LINE|L1 59519 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 339-7 chr7 112198458 112198709 + 1.5 NA intron (NM_001363540, intron 1 of 52) L2|LINE|L2 7816 NM_014705 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 260.667-10 chr2 32657924 32658431 + 1.5 NA intron (NM_017735, intron 5 of 19) AluJr|SINE|Alu 22922 NR_039922 100616219 NR_039922 ENSG00000265057 MIR4765 - microRNA 4765 ncRNA 208.833-13 chr15 66300238 66300490 + 1.5 NA intron (NM_001323948, intron 2 of 15) L1MB7|LINE|L1 6549 NM_001323941 115752 Hs.446251 NM_133375 ENSG00000166938 DIS3L DIS3L1 DIS3 like exosome 3'-5' exoribonuclease protein-coding 147-62 chr4 160993562 160993741 + 1.5 NA Intergenic (TTAATAA)n|Simple_repeat|Simple_repeat -1029082 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 205.167 chr1 101934348 101934546 + 1.5 NA intron (NM_058170, intron 1 of 5) L1PA14|LINE|L1 62435 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 224.666-6 chr20 37792981 37793313 + 1.5 NA intron (NM_001281495, intron 11 of 16) L1ME1|LINE|L1 99117 NM_030877 56259 Hs.472667 NM_030877 ENSG00000132792 CTNNBL1 C20orf33|NAP|P14L|PP8304|dJ633O20.1 catenin beta like 1 protein-coding 232-17 chr19 46338348 46338645 + 1.5 NA TTS (NM_152796) TTS (NM_152796) -8591 NM_001204284 5536 Hs.654604 NM_006247 ENSG00000011485 PPP5C PP5|PPP5|PPT protein phosphatase 5 catalytic subunit protein-coding 373-5 chr8 88815261 88815677 + 1.5 NA Intergenic L1PA17|LINE|L1 -487986 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 211.5-29 chr5 174974829 174975105 + 1.5 NA intron (NR_046113, intron 2 of 2) intron (NR_046113, intron 2 of 2) 20764 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 241.667-14 chr2 31031222 31031741 + 1.5 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 98159 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 244.5-10 chr17 34486680 34487168 + 1.5 NA Intergenic Intergenic 92445 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 301.667-3 chr11 112196349 112196736 + 1.5 NA intron (NM_031938, intron 5 of 11) intron (NM_031938, intron 5 of 11) 20176 NM_001037290 83875 Hs.728325 NM_031938 ENSG00000197580 BCO2 B-DIOX-II|BCDO2 beta-carotene oxygenase 2 protein-coding 328.501 chr1 180590803 180591127 + 1.5 NA Intergenic LTR78|LTR|ERV1 31991 NR_125716 148756 NR_125716 ENSG00000236719 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 169.333-45 chr3 1372143 1372338 + 1.5 NA intron (NM_001289080, intron 12 of 22) intron (NM_001289080, intron 12 of 22) 279216 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 322.833-7 chr9 126999576 127000072 + 1.5 NA intron (NM_001190729, intron 4 of 17) L1MC1|LINE|L1 37599 NM_001190728 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 163.334-2 chr2 74813650 74813832 + 1.5 NA Intergenic Intergenic -18914 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 180.167 chr1 50745295 50745433 + 1.5 NA intron (NM_007051, intron 4 of 18) intron (NM_007051, intron 4 of 18) 214903 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 327.5-7 chr9 85868812 85869181 + 1.5 NA Intergenic Intergenic 62994 NR_029410 389765 Hs.715986 NR_029410 LOC389765 - kinesin family member 27 pseudogene pseudo 401.167-2 chr2 45531160 45531606 + 1.5 NA intron (NM_018079, intron 14 of 20) intron (NM_018079, intron 14 of 20) 79884 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 219.833-14 chr3 193890564 193890878 + 1.5 NA Intergenic L1ME1|LINE|L1 -46712 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 260-6 chr11 101153063 101153252 + 1.5 NA intron (NR_073144, intron 4 of 4) L1MA6|LINE|L1 -23344 NM_000926 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 359-3 chr5 75917742 75918035 + 1.5 NA Intergenic L1MA1|LINE|L1 -165495 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 322.167-6 chr3 35629063 35629373 + 1.5 NA Intergenic Intergenic -10307 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 206.167-18 chr3 99897735 99897998 + 1.5 NA intron (NM_001042459, intron 4 of 4) intron (NM_001042459, intron 4 of 4) -21663 NM_014890 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 308-10 chr8 118582053 118582508 + 1.5 NA intron (NR_109794, intron 1 of 4) intron (NR_109794, intron 1 of 4) -38721 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 156.333-37 chr17 29486677 29486795 + 1.5 NA intron (NM_025142, intron 8 of 17) intron (NM_025142, intron 8 of 17) 80301 NM_198147 116236 Hs.106510 NM_198147 ENSG00000168792 ABHD15 - abhydrolase domain containing 15 protein-coding 361.167-6 chr8 83089520 83089807 + 1.5 NA Intergenic HERVL-int|LTR|ERVL 177559 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 277.834-4 chr8 92058880 92059360 + 1.5 NA intron (NM_001198633, intron 1 of 10) intron (NM_001198633, intron 1 of 10) 3514 NM_004349 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 168.833-44 chr5 19862340 19862546 + 1.5 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 23829 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 243-6 chr10 92227462 92227663 + 1.5 NA intron (NM_001178137, intron 2 of 9) intron (NM_001178137, intron 2 of 9) 15717 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 361.5-4 chr4 41563011 41563649 + 1.5 NA intron (NM_001330786, intron 1 of 22) MIRb|SINE|MIR 25173 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 206.166-3 chrX 44302369 44302559 + 1.5 NA intron (NM_025184, intron 2 of 14) intron (NM_025184, intron 2 of 14) 41208 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 286.667-6 chr2 99357221 99357515 + 1.5 NA intron (NM_015904, intron 1 of 23) MIRc|SINE|MIR 19979 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 218-43 chr7 55490709 55491040 + 1.5 NA intron (NM_001321243, intron 4 of 5) intron (NM_001321243, intron 4 of 5) 36006 NM_001321251 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 146.5-7 chr1 208972157 208972268 + 1.5 NA promoter-TSS (NR_146915) promoter-TSS (NR_146915) -242 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 302.5-13 chr7 99996864 99997189 + 1.5 NA promoter-TSS (NR_159960) promoter-TSS (NR_159960) -49 NR_159960 105375423 NR_159959 LOC105375423 - uncharacterized LOC105375423 ncRNA 190.5-45 chr5 165892147 165892382 + 1.5 NA Intergenic Intergenic 1034106 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 220-15 chr2 162757804 162758038 + 1.5 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -11015 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 194-5 chr10 76917271 76917522 + 1.5 NA intron (NM_001271519, intron 23 of 28) intron (NM_001271519, intron 23 of 28) 29352 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 315.167-16 chrX 76604501 76604727 + 1.5 NA Intergenic L2|LINE|L2 176904 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 361.167 chr1 179426570 179426875 + 1.5 NA intron (NR_073544, intron 12 of 25) L1ME3G|LINE|L1 60678 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 267.167-14 chr2 209413972 209414395 + 1.5 NA Intergenic L1ME1|LINE|L1 -9864 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 136.5-40 chr16 74485246 74485366 + 1.5 NA intron (NR_027264, intron 9 of 26) intron (NR_027264, intron 9 of 26) -63836 NM_001011880 497190 Hs.454670 NM_001011880 ENSG00000140839 CLEC18B MRCL2 C-type lectin domain family 18 member B protein-coding 483.334 chrX 53089559 53090199 + 1.5 NA Intergenic L1MC3|LINE|L1 -4278 NR_145973 102723508 Hs.633244 NR_110456 KANTR LINC01155|Spasm KDM5C adjacent transcript ncRNA 295.667-8 chr6 147711688 147712001 + 1.5 NA Intergenic Intergenic 203154 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 240.333-21 chr4 92153527 92153769 + 1.5 NA Intergenic Intergenic 123654 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 212.167-17 chr4 65261777 65262011 + 1.5 NA Intergenic Intergenic -257394 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 138.833-32 chr2 8811634 8811771 + 1.5 NA intron (NM_001348732, intron 6 of 28) intron (NM_001348732, intron 6 of 28) 25911 NR_145964 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 252.5-13 chr2 103329783 103330137 + 1.5 NA Intergenic L1MCb|LINE|L1 -345531 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 269.5-20 chr9 84718989 84719548 + 1.5 NA intron (NM_001018064, intron 6 of 17) MIRb|SINE|MIR 13367 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 265.333-8 chr14 26037559 26037837 + 1.5 NA Intergenic Intergenic 515732 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 261.667-19 chr17 17723898 17724284 + 1.5 NA 5' UTR (NM_030665, exon 2 of 6) 5' UTR (NM_030665, exon 2 of 6) 42211 NR_130894 100861516 Hs.624874 NR_130894 ENSG00000237328 RAI1-AS1 - RAI1 antisense RNA 1 ncRNA 270.5-8 chr2 61245459 61245768 + 1.5 NA intron (NM_014709, intron 50 of 79) intron (NM_014709, intron 50 of 79) 68195 NR_152212 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 122.667-53 chr20 54415729 54415857 + 1.5 NA Intergenic L1MC5a|LINE|L1 -59800 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 252.5-23 chr6 126588145 126588424 + 1.5 NA Intergenic L1PB4|LINE|L1 103653 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 279.5-12 chr5 145621312 145621718 + 1.5 NA Intergenic L1MB8|LINE|L1 213827 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 541.167 chr11 26325900 26326384 + 1.5 NA intron (NM_001313726, intron 2 of 27) intron (NM_001313726, intron 2 of 27) -5988 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 329.167 chr12 14650839 14651434 + 1.5 NA intron (NM_004963, intron 15 of 26) intron (NM_004963, intron 15 of 26) 45463 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 348.334-5 chr9 111290593 111291111 + 1.5 NA Intergenic AluJb|SINE|Alu -19638 NR_106989 102465800 NR_106989 ENSG00000274263 MIR7702 hsa-mir-7702 microRNA 7702 ncRNA 258.167-13 chr4 32056386 32056666 + 1.5 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -34104 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 373.333-5 chr7 22362593 22362996 + 1.5 NA Intergenic LTR9|LTR|ERV1 -5640 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 409.5 chr2 12323734 12324194 + 1.5 NA intron (NR_110196, intron 4 of 5) MLT1B|LTR|ERVL-MaLR 124834 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 227.167-25 chr4 116269740 116270270 + 1.5 NA Intergenic Intergenic -29720 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 305.667 chr1 178589617 178590002 + 1.5 NA Intergenic L1MA5A|LINE|L1 47013 NR_033186 400798 Hs.668085 NM_207467 ENSG00000213057 C1orf220 - chromosome 1 open reading frame 220 (putative) ncRNA 159.667-93 chr8 87526008 87526235 + 1.5 NA Intergenic Intergenic 347894 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 292.5-8 chr15 63995041 63995433 + 1.5 NA intron (NM_014326, intron 2 of 11) AluJb|SINE|Alu 51248 NM_001363730 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 310-4 chr15 61813080 61813304 + 1.5 NA Intergenic L2c|LINE|L2 83274 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 175.167-26 chr18 12386627 12386825 + 1.5 NA Intergenic Intergenic -9450 NM_006796 10939 Hs.726355 NM_006796 ENSG00000141385 AFG3L2 SCA28|SPAX5 AFG3 like matrix AAA peptidase subunit 2 protein-coding 200.333-38 chr8 80673163 80673417 + 1.5 NA intron (NM_001033723, intron 4 of 8) intron (NM_001033723, intron 4 of 8) 187064 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 285.167 chr1 95651824 95652164 + 1.5 NA Intergenic Intergenic 141878 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 273.5-16 chr3 176198042 176198232 + 1.5 NA Intergenic L1M4|LINE|L1 -46414 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 131-3 chr1 246101937 246102045 + 1.5 NA intron (NM_022743, intron 5 of 11) L2a|LINE|L2 315421 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 172-14 chr12 59982960 59983162 + 1.5 NA Intergenic ERVL-B4-int|LTR|ERVL 293691 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 282.167-14 chr3 96952660 96952946 + 1.5 NA intron (NM_001080448, intron 2 of 17) L1PA13|LINE|L1 138209 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 302-17 chr20 55360399 55360775 + 1.5 NA Intergenic Intergenic -62456 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 280.833-5 chr3 76231439 76231783 + 1.5 NA Intergenic Intergenic -446062 NM_001290210 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 346.333-6 chr5 61281323 61281591 + 1.5 NA Intergenic Intergenic -16528 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 162.833-52 chr8 99474426 99474609 + 1.5 NA intron (NM_017890, intron 24 of 61) L1ME1|LINE|L1 62213 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 179.5-9 chr16 4963578 4963843 + 1.5 NA intron (NM_014692, intron 2 of 15) AluJo|SINE|Alu 5380 NM_014692 9717 Hs.512856 NM_014692 ENSG00000103184 SEC14L5 PRELID4B SEC14 like lipid binding 5 protein-coding 125.667-57 chr2 51160130 51160301 + 1.5 NA intron (NR_135237, intron 2 of 10) MLT1K|LTR|ERVL-MaLR 127614 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 240.333 chr1 71862364 71862600 + 1.5 NA intron (NM_173808, intron 2 of 6) L4_B_Mam|LINE|RTE-X -25470 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 243.5-16 chr2 211418143 211418343 + 1.5 NA intron (NM_005235, intron 25 of 27) intron (NM_005235, intron 25 of 27) 800672 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 238.167-19 chr6 491782 492163 + 1.5 NA intron (NM_018303, intron 25 of 27) L1M4|LINE|L1 100220 NR_046000 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 223.5-15 chr22 41885065 41885415 + 1.5 NA intron (NR_103834, intron 12 of 21) intron (NR_103834, intron 12 of 21) -15704 NR_029507 407039 NR_029507 ENSG00000207932 MIR33A MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a microRNA 33a ncRNA 186.667-19 chr13 66011531 66011836 + 1.5 NA Intergenic ERVL-B4-int|LTR|ERVL -45254 NR_039692 100616302 NR_039692 ENSG00000263581 MIR548X2 - microRNA 548x-2 ncRNA 374.167-3 chr22 35032107 35032491 + 1.5 NA Intergenic Kanga1|DNA|TcMar-Tc2 -33859 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 292.167-10 chr8 82221512 82222122 + 1.5 NA Intergenic Intergenic -379531 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 271.5 chr1 88712125 88712450 + 1.5 NA intron (NM_001320708, intron 1 of 20) L2a|LINE|L2 -27083 NR_110682 101927891 Hs.637231 NR_110682 ENSG00000237505 PKN2-AS1 - PKN2 antisense RNA 1 ncRNA 279.167-12 chr6 42652566 42653030 + 1.5 NA intron (NM_015255, intron 25 of 46) intron (NM_015255, intron 25 of 46) 69799 NM_000322 5961 Hs.654489 NM_000322 ENSG00000112619 PRPH2 AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 protein-coding 415.167-2 chr2 116695149 116695695 + 1.5 NA Intergenic Intergenic -1119269 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 308.333 chr1 56673658 56673889 + 1.5 NA intron (NM_006252, intron 1 of 8) intron (NM_006252, intron 1 of 8) -28455 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 339.5-7 chr7 119737431 119737736 + 1.5 NA intron (NR_131962, intron 2 of 2) intron (NR_131962, intron 2 of 2) 169792 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 326.999-2 chr3 172151162 172151507 + 1.5 NA intron (NM_001135095, intron 3 of 25) intron (NM_001135095, intron 3 of 25) 110803 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 297.166 chr10 15523779 15524024 + 1.5 NA intron (NM_001291494, intron 27 of 28) AluSz|SINE|Alu -152612 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 344.834-3 chr8 110756786 110757131 + 1.5 NA Intergenic Eulor11|DNA|DNA 270475 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 214.167-25 chr8 81233113 81233355 + 1.5 NA Intergenic Intergenic -47302 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 260-8 chr14 46054218 46054633 + 1.5 NA Intergenic Intergenic -9734 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 261.5-4 chr12 23565357 23565612 + 1.5 NA intron (NM_152989, intron 13 of 17) intron (NM_152989, intron 13 of 17) 19102 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 260.5-17 chr5 31026203 31026398 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -167386 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 308.667-3 chr2 121377046 121377688 + 1.5 NA intron (NM_015282, intron 33 of 38) L1MA5|LINE|L1 -92165 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 212.667-32 chr5 36938505 36938714 + 1.5 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 61840 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 181.333-38 chr3 120412612 120412808 + 1.5 NA intron (NM_007085, intron 3 of 10) intron (NM_007085, intron 3 of 10) -16981 NR_029584 406975 NR_029584 ENSG00000284121 MIR198 MIRN198|miR-198 microRNA 198 ncRNA 181.167-29 chr8 20064882 20065081 + 1.5 NA Intergenic Intergenic 118155 NM_001142324 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 232.833-19 chr7 79158862 79159079 + 1.5 NA intron (NM_001301128, intron 1 of 20) MER4B-int|LTR|ERV1 149982 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 366.833 chr8 68964185 68964465 + 1.5 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 139865 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 199.5-25 chr3 144590582 144590770 + 1.5 NA Intergenic Intergenic 617595 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 210.5-36 chr4 133613816 133614119 + 1.5 NA Intergenic L3|LINE|CR1 464673 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 335-3 chr2 168086782 168087058 + 1.5 NA intron (NM_013233, intron 10 of 17) intron (NM_013233, intron 10 of 17) -145776 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 477.167 chr11 69383835 69384458 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -41509 NM_001319657 102724265 Hs.448669 NM_001319657 LOC102724265 - uncharacterized LOC102724265 protein-coding 273.333-12 chr20 49534014 49534453 + 1.5 NA intron (NM_000961, intron 5 of 9) L1ME4b|LINE|L1 33904 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 240.5-4 chr14 48270460 48270695 + 1.5 NA Intergenic L1MC1|LINE|L1 -475563 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 363.666 chr5 74510709 74511166 + 1.5 NA intron (NR_126354, intron 1 of 2) LTR102_Mam|LTR|ERVL 26039 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 224.5-20 chr5 78526913 78527144 + 1.5 NA intron (NM_005779, intron 3 of 4) intron (NM_005779, intron 3 of 4) 121744 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 356.5-4 chr4 66068447 66068699 + 1.5 NA Intergenic Intergenic -208251 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 196-55 chr5 92705825 92706058 + 1.5 NA Intergenic L1MA4A|LINE|L1 865402 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 146.5-21 chr12 60259773 60259929 + 1.5 NA Intergenic Intergenic 570481 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 138.5-12 chr10 33548488 33548610 + 1.5 NA Intergenic Intergenic -213644 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 166.167-56 chr6 121106635 121106833 + 1.5 NA intron (NR_104452, intron 33 of 35) intron (NR_104452, intron 33 of 35) 227746 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 241-24 chr9 27265609 27265800 + 1.5 NA intron (NR_026679, intron 10 of 16) intron (NR_026679, intron 10 of 16) 17089 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 245-21 chr9 88725692 88726192 + 1.5 NA Intergenic Intergenic 19963 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 477.166-2 chr9 73207100 73207676 + 1.5 NA Intergenic Intergenic 55523 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 288 chr11 12603008 12603318 + 1.5 NA Intergenic Intergenic -71258 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 119.834 chr11 70010995 70011116 + 1.5 NA Intergenic Intergenic 52869 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 129.333-53 chr20 11128182 11128345 + 1.5 NA Intergenic Intergenic 101719 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 227.167-23 chr3 150041847 150042174 + 1.5 NA Intergenic L1MEc|LINE|L1 -54433 NR_136187 105374313 Hs.151216 NR_136187 LOC105374313 - uncharacterized LOC105374313 ncRNA 199.166 chr1 35663844 35664103 + 1.5 NA Intergenic HAL1|LINE|L1 -22447 NM_002794 5690 Hs.471441 NM_002794 ENSG00000126067 PSMB2 HC7-I proteasome subunit beta 2 protein-coding 221-14 chr14 86388957 86389204 + 1.5 NA Intergenic L1MEd|LINE|L1 454402 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 165.5-29 chr17 58731439 58731668 + 1.5 NA intron (NM_058216, intron 7 of 8) AluSp|SINE|Alu -24301 NM_014906 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 391.333-2 chr2 199632212 199632693 + 1.5 NA intron (NR_110270, intron 5 of 6) intron (NR_110270, intron 5 of 6) 24384 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 162.167-23 chr2 193305515 193305653 + 1.5 NA Intergenic Intergenic 555739 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 218-39 chr5 105356354 105356631 + 1.5 NA Intergenic Intergenic 257018 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 146-68 chr8 48843623 48843810 + 1.5 NA Intergenic L1M5|LINE|L1 77713 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 215.167-22 chr6 46889289 46889575 + 1.5 NA intron (NM_001098518, intron 3 of 20) intron (NM_001098518, intron 3 of 20) -14039 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 447.333 chr4 5104409 5104772 + 1.5 NA intron (NM_001306082, intron 1 of 12) L1ME3A|LINE|L1 53110 NM_001345969 55351 Hs.133062 NM_018401 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 277.833-7 chr5 29673824 29674247 + 1.5 NA Intergenic L1MB7|LINE|L1 -206525 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 233.167-6 chr11 113913010 113913200 + 1.5 NA intron (NM_006028, intron 2 of 8) L1ME2|LINE|L1 4264 NM_001363563 9177 Hs.241377 NM_006028 ENSG00000149305 HTR3B 5-HT3B 5-hydroxytryptamine receptor 3B protein-coding 145.167-74 chr8 86479866 86480010 + 1.5 NA intron (NM_001286719, intron 5 of 8) intron (NM_001286719, intron 5 of 8) 28748 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 201.333-33 chr6 2571956 2572152 + 1.5 NA Intergenic L1MC3|LINE|L1 -62446 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 296.5 chr1 62752775 62753021 + 1.5 NA Intergenic AluSq|SINE|Alu -31208 NM_178221 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 246.167-2 chr1 194820824 194821091 + 1.5 NA Intergenic Intergenic 1267758 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 217-4 chr11 121271696 121271944 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -20951 NM_006918 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 423.5 chr11 84065719 84066116 + 1.5 NA intron (NM_001142699, intron 10 of 27) L1PA15|LINE|L1 207363 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 281.833-9 chr6 136230925 136231213 + 1.5 NA TTS (NM_138419) TTS (NM_138419) 19242 NM_001099286 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 295.833-4 chr2 116376268 116376640 + 1.5 NA Intergenic Intergenic 1032639 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 293.499 chr6 119994538 119994753 + 1.5 NA Intergenic Intergenic -20534 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 167.167-7 chr10 11322274 11322474 + 1.5 NA intron (NM_001025076, intron 11 of 13) intron (NM_001025076, intron 11 of 13) 22300 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 341.334 chr10 68914213 68914546 + 1.5 NA intron (NM_024045, intron 7 of 14) intron (NM_024045, intron 7 of 14) 13064 NM_024045 79009 Hs.522984 NM_024045 ENSG00000107625 DDX50 GU2|GUB|RH-II/GuB|mcdrh DExD-box helicase 50 protein-coding 313.667-5 chr14 47233933 47234308 + 1.5 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 109126 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 231.5-23 chr7 104054691 104055127 + 1.5 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR -65251 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 206-37 chr9 103538473 103538654 + 1.5 NA Intergenic L1PA15|LINE|L1 -213530 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 232.5-33 chr7 1775174 1775416 + 1.5 NA Intergenic L1MD2|LINE|L1 -32985 NR_120510 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 271.5-6 chr15 84848475 84848818 + 1.5 NA intron (NM_020778, intron 5 of 13) L1MEf|LINE|L1 31966 NM_020778 57538 Hs.459183 NM_020778 ENSG00000136383 ALPK3 CMH27|MAK|MIDORI alpha kinase 3 protein-coding 216-35 chr9 27975909 27976077 + 1.5 NA intron (NM_001354574, intron 5 of 5) MIR|SINE|MIR -402127 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 296.167-8 chr4 143107812 143108088 + 1.5 NA Intergenic L1PA5|LINE|L1 76911 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 526.667 chr7 110205965 110206509 + 1.5 NA Intergenic Intergenic -246024 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 187.333-85 chrX 41151851 41152151 + 1.5 NA intron (NM_001039591, intron 13 of 44) AluSz6|SINE|Alu 66556 NM_001039591 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 315.334-2 chr5 6019985 6020278 + 1.5 NA Intergenic Intergenic 317161 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 314.167-5 chr2 41912156 41912482 + 1.5 NA Intergenic Intergenic 21404 NR_110263 101929723 Hs.369330 NR_110262 ENSG00000234362 LINC01914 - long intergenic non-protein coding RNA 1914 ncRNA 171.5-24 chr17 49669874 49670035 + 1.5 NA intron (NM_001007230, intron 1 of 11) intron (NM_001007230, intron 1 of 11) 8143 NM_001007228 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 260-10 chr15 99268005 99268266 + 1.5 NA intron (NR_135755, intron 2 of 8) intron (NR_135755, intron 2 of 8) 10610 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 313-4 chr4 71594688 71595278 + 1.5 NA Intergenic Intergenic 189096 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 242.333-9 chr2 71107572 71107802 + 1.5 NA Intergenic Intergenic 22542 NM_032601 84693 Hs.94949 NM_032601 ENSG00000124370 MCEE GLOD2 methylmalonyl-CoA epimerase protein-coding 181.5-55 chr7 3590364 3590609 + 1.5 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 289234 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 206.667-25 chr2 73366854 73367109 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL -18777 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 361-5 chr6 40840621 40841091 + 1.5 NA Intergenic L1MDa|LINE|L1 182424 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 549 chr8 129597917 129598502 + 1.5 NA intron (NR_130917, intron 1 of 3) L1MB7|LINE|L1 -23191 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 347.667-2 chr16 53640682 53641029 + 1.5 NA intron (NM_015272, intron 19 of 26) intron (NM_015272, intron 19 of 26) 63004 NM_001328423 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 282.834-3 chr4 20042645 20042901 + 1.5 NA Intergenic Intergenic -209132 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 379.833-6 chrX 29061147 29061413 + 1.5 NA intron (NM_014271, intron 2 of 10) intron (NM_014271, intron 2 of 10) 473834 NM_014271 11141 Hs.658912 NM_014271 ENSG00000169306 IL1RAPL1 IL-1-RAPL-1|IL-1RAPL-1|IL1R8|IL1RAPL|IL1RAPL-1|MRX10|MRX21|MRX34|OPHN4|TIGIRR-2 interleukin 1 receptor accessory protein like 1 protein-coding 342.333 chr10 22390971 22391318 + 1.5 NA intron (NM_172242, intron 7 of 9) intron (NM_172242, intron 7 of 9) 45648 NM_012443 9576 Hs.655170 NM_012443 ENSG00000077327 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 252.333-19 chr5 64055873 64056169 + 1.5 NA Intergenic Intergenic -93729 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 175.333-53 chr5 121240612 121240795 + 1.5 NA Intergenic Intergenic -81847 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 274.833-2 chr1 185750456 185750716 + 1.5 NA intron (NM_031935, intron 1 of 106) L1MEd|LINE|L1 16195 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 212.167-25 chr8 98077520 98077746 + 1.5 NA intron (NM_001170806, intron 1 of 1) intron (NM_001170806, intron 1 of 1) 13065 NM_173549 203111 Hs.171455 NM_173549 ENSG00000177459 ERICH5 C8orf47 glutamate rich 5 protein-coding 369.5-2 chr5 169586712 169587175 + 1.5 NA intron (NM_001329641, intron 1 of 11) L2a|LINE|L2 2863 NM_001329640 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 137.666-2 chr18 64096082 64096335 + 1.5 NA intron (NR_027245, intron 3 of 3) L1MC|LINE|L1 -7883 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 175.333-5 chr11 35741560 35741727 + 1.5 NA intron (NM_017583, intron 4 of 4) intron (NM_017583, intron 4 of 4) 78868 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 186.667-6 chr10 84397055 84397230 + 1.5 NA intron (NM_018999, intron 3 of 10) intron (NM_018999, intron 3 of 10) -27797 NM_001284243 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 208.333-2 chr1 93380626 93380884 + 1.5 NA Intergenic L1MC|LINE|L1 34848 NM_001938 1810 Hs.348418 NM_001938 ENSG00000117505 DR1 NC2|NC2-BETA|NC2B|NCB2 down-regulator of transcription 1 protein-coding 137.667-42 chr17 71140054 71140227 + 1.5 NA intron (NR_104152, intron 2 of 3) L1MC4a|LINE|L1 62039 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 231-9 chr16 46555913 46556155 + 1.5 NA intron (NR_026556, intron 4 of 16) intron (NR_026556, intron 4 of 16) 13063 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 172.5-45 chr4 102785190 102785344 + 1.5 NA intron (NR_125932, intron 4 of 4) Charlie5|DNA|hAT-Charlie 8230 NR_125932 102723704 Hs.638374 NR_125932 LOC102723704 - uncharacterized LOC102723704 ncRNA 202.334-3 chr18 5799499 5799715 + 1.5 NA Intergenic L1MB7|LINE|L1 -41088 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 337.833 chr6 63100885 63101176 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 218947 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 304.667-10 chr2 66167556 66167811 + 1.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR 190645 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 312.334 chr10 69719776 69720033 + 1.5 NA Intergenic L1MC3|LINE|L1 -82002 NM_080805 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 410.833 chr1 53578190 53578720 + 1.5 NA intron (NM_147193, intron 3 of 9) intron (NM_147193, intron 3 of 9) 119056 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 211.667-40 chr7 145738167 145738440 + 1.5 NA Intergenic L1PA16|LINE|L1 -902250 NM_001042482 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 369.333-2 chr21 30371157 30371670 + 1.5 NA TTS (NM_181621) TTS (NM_181621) 858 NM_181621 337959 Hs.58152 NM_181621 ENSG00000182816 KRTAP13-2 KAP13-2 keratin associated protein 13-2 protein-coding 134.333-64 chr2 154388094 154388203 + 1.5 NA intron (NM_052917, intron 9 of 12) L1MA7|LINE|L1 69290 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 187.667-25 chr18 5798116 5798363 + 1.5 NA Intergenic Intergenic -42456 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 140.833-36 chr2 231175792 231175979 + 1.5 NA Intergenic Intergenic -22746 NM_001352757 80210 Hs.162411 NM_025139 ENSG00000135931 ARMC9 ARM|JBTS30|KU-MEL-1|NS21 armadillo repeat containing 9 protein-coding 250.167-17 chr7 43654107 43654315 + 1.5 NA intron (NM_001321205, intron 1 of 3) L1M6|LINE|L1 71103 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 388.5-5 chr8 76352827 76353237 + 1.5 NA Intergenic Intergenic -53622 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 230.5-20 chr7 80369971 80370176 + 1.5 NA Intergenic Intergenic 4366 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 264.833-8 chr6 67894036 67894321 + 1.5 NA Intergenic L1PA3|LINE|L1 -161173 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 236.334-4 chr17 70244277 70244663 + 1.5 NA Intergenic LTR33|LTR|ERVL 74935 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 207.5-3 chr10 93844278 93844484 + 1.5 NA Intergenic LTR26E|LTR|ERV1 -49597 NR_144335 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 338 chr1 31864376 31864667 + 1.5 NA Intergenic MER74B|LTR|ERVL -48470 NM_001281988 90853 Hs.62604 NM_144569 ENSG00000134668 SPOCD1 PPP1R146 SPOC domain containing 1 protein-coding 283.667 chr1 231543472 231543699 + 1.5 NA intron (NR_028393, intron 4 of 15) intron (NR_028393, intron 4 of 15) 14916 NM_005999 7257 Hs.13318 NM_005999 ENSG00000116918 TSNAX C3PO|TRAX translin associated factor X protein-coding 297-3 chr14 30864924 30865239 + 1.5 NA Intergenic MER105|DNA|hAT-Charlie -9454 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 168-24 chr16 77826814 77826931 + 1.5 NA intron (NM_020927, intron 3 of 8) intron (NM_020927, intron 3 of 8) 38308 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 114.5-72 chr5 50799438 50799579 + 1.5 NA intron (NM_024615, intron 14 of 25) L1MB5|LINE|L1 132094 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 216.167-16 chr20 44488402 44488781 + 1.5 NA intron (NM_001039199, intron 4 of 4) L2a|LINE|L2 12717 NM_024331 79183 Hs.283869 NM_024331 ENSG00000124120 TTPAL C20orf121 alpha tocopherol transfer protein like protein-coding 129.667-44 chr19 27768464 27768569 + 1.5 NA Intergenic HSAT4|Satellite|centr -24915 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 198.833-8 chr16 19511812 19511993 + 1.5 NA intron (NR_136689, intron 2 of 5) L1MA4A|LINE|L1 10196 NM_016641 51573 Hs.512607 NM_016641 ENSG00000006007 GDE1 363E6.2|MIR16 glycerophosphodiester phosphodiesterase 1 protein-coding 166-28 chr16 86421321 86421440 + 1.5 NA Intergenic L1MC4a|LINE|L1 -75701 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 163.5-67 chr7 3183831 3183948 + 1.5 NA Intergenic AluJr|SINE|Alu -25316 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 307.834-2 chr12 92229367 92229868 + 1.5 NA Intergenic Intergenic 83532 NR_135036 101928617 Hs.434392 NR_135036 LOC101928617 - uncharacterized LOC101928617 ncRNA 217-20 chr22 34664987 34665270 + 1.5 NA Intergenic AluSq2|SINE|Alu 332788 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 281.167-6 chr2 80869583 80869800 + 1.5 NA Intergenic Intergenic 556312 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 275.5-9 chr3 33543305 33543553 + 1.5 NA intron (NM_001365634, intron 29 of 35) intron (NM_001365634, intron 29 of 35) -103024 NM_001128161 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 415.5 chr6 45194413 45194932 + 1.5 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) 3098 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 403-5 chr8 90435028 90435451 + 1.5 NA Intergenic Intergenic 170824 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 303.667 chr1 218124885 218125187 + 1.5 NA Intergenic Intergenic 81531 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 155.167-9 chr12 43129053 43129211 + 1.5 NA Intergenic L2c|LINE|L2 -26183 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 406.5 chr11 58620473 58620982 + 1.5 NA 3' UTR (NM_053023, exon 11 of 11) 3' UTR (NM_053023, exon 11 of 11) -1938 NM_000614 1270 Hs.524920 NM_000614 ENSG00000242689 CNTF HCNTF ciliary neurotrophic factor protein-coding 184.5-55 chr9 99725622 99725783 + 1.5 NA intron (NR_109802, intron 2 of 6) intron (NR_109802, intron 2 of 6) 94187 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 240.667-31 chr4 107233852 107234137 + 1.5 NA Intergenic Intergenic -197681 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 198.667-24 chr17 75038078 75038322 + 1.5 NA TTS (NM_006356) TTS (NM_006356) 5633 NR_110835 23510 Hs.514468 NM_015353 ENSG00000180901 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 164.5-15 chr12 4515849 4515989 + 1.5 NA intron (NR_144382, intron 5 of 9) L1MA9|LINE|L1 22550 NM_020374 57102 Hs.302977 NM_020374 ENSG00000047621 C12orf4 - chromosome 12 open reading frame 4 protein-coding 166.667-36 chr4 36393162 36393360 + 1.5 NA Intergenic Intergenic 33167 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 285.5-10 chr2 69027920 69028206 + 1.5 NA intron (NM_032208, intron 1 of 17) L1M6|LINE|L1 14919 NM_053034 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 319 chr1 29494573 29494945 + 1.5 NA Intergenic L1MB7|LINE|L1 -144645 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 196.167-9 chr11 115541586 115541792 + 1.5 NA Intergenic L3|LINE|CR1 -37274 NM_001301043 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 170.167-57 chr9 125661617 125661766 + 1.5 NA intron (NM_001006621, intron 1 of 9) L1MC5a|LINE|L1 45517 NM_001006617 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g MAPK associated protein 1 protein-coding 288-3 chr11 111337987 111338286 + 1.5 NA Intergenic AluJb|SINE|Alu -9621 NR_039712 100616330 NR_039712 ENSG00000264032 MIR4491 mir-4491 microRNA 4491 ncRNA 178-42 chr4 126304806 126304996 + 1.5 NA Intergenic (TTATAA)n|Simple_repeat|Simple_repeat 797642 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 297.167-6 chr8 76861505 76861839 + 1.5 NA intron (NM_024721, intron 10 of 10) intron (NM_024721, intron 10 of 10) 105178 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 271.834-2 chr13 94215421 94215632 + 1.5 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) -27535 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 326.667-6 chr8 84571458 84571882 + 1.5 NA intron (NM_001354308, intron 3 of 9) L1PA15-16|LINE|L1 -134257 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 200.167-41 chr5 94797409 94797552 + 1.5 NA intron (NM_001297777, intron 15 of 19) intron (NM_001297777, intron 15 of 19) 178811 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 169.666 chr13 35938153 35938332 + 1.5 NA intron (NM_001330071, intron 4 of 16) intron (NM_001330071, intron 4 of 16) -82381 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 191.5-19 chr16 56448639 56448849 + 1.5 NA intron (NM_007006, intron 1 of 6) intron (NM_007006, intron 1 of 6) 2588 NM_007006 11051 Hs.528834 NM_007006 ENSG00000167005 NUDT21 CFIM25|CPSF5 nudix hydrolase 21 protein-coding 283.167-10 chr5 147883156 147883646 + 1.5 NA Intergenic LTR33A_|LTR|ERVL 4690 NM_054023 117156 Hs.483765 NM_054023 ENSG00000164265 SCGB3A2 LU103|PNSP1|UGRP1|pnSP-1 secretoglobin family 3A member 2 protein-coding 214-40 chr5 147715062 147715309 + 1.5 NA intron (NM_001270934, intron 1 of 20) L1MEg|LINE|L1 67543 NM_001282282 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 229.333-3 chr10 15803734 15804177 + 1.5 NA intron (NM_024948, intron 10 of 14) intron (NM_024948, intron 10 of 14) 56552 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 270.833-19 chr9 104813233 104813520 + 1.5 NA intron (NM_005502, intron 27 of 49) intron (NM_005502, intron 27 of 49) 49247 NM_018376 55335 Hs.429294 NM_018376 ENSG00000165028 NIPSNAP3B FP944|NIPSNAP3|SNAP1 nipsnap homolog 3B protein-coding 417-3 chr12 127930157 127930778 + 1.5 NA intron (NR_046392, intron 1 of 4) LTR28|LTR|ERV1 15057 NR_046392 100862680 Hs.385496 NR_046392 ENSG00000256193 LINC00507 - long intergenic non-protein coding RNA 507 ncRNA 210.166-4 chr8 134864375 134864644 + 1.5 NA intron (NR_125427, intron 1 of 2) MLT2D|LTR|ERVL 14574 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 218-14 chr14 74034505 74034660 + 1.5 NA intron (NM_025057, intron 4 of 11) intron (NM_025057, intron 4 of 11) 15233 NM_025057 80127 Hs.644621 NM_025057 ENSG00000119636 BBOF1 C14orf45|CCDC176 basal body orientation factor 1 protein-coding 220.5-24 chr3 150786127 150786401 + 1.5 NA Intergenic MER44B|DNA|TcMar-Tigger -23095 NM_005067 6478 Hs.477959 NM_005067 ENSG00000181788 SIAH2 hSiah2 siah E3 ubiquitin protein ligase 2 protein-coding 434.333-2 chr6 68052060 68052555 + 1.5 NA Intergenic L1MC2|LINE|L1 -3044 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 186.333-36 chr20 55030520 55030676 + 1.5 NA Intergenic MER66-int|LTR|ERV1 -392445 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 162.334-5 chr18 24435511 24435714 + 1.5 NA intron (NM_018439, intron 4 of 10) MER67D|LTR|ERV1 8942 NM_018439 55364 Hs.515317 NM_018439 ENSG00000154059 IMPACT RWDD5 impact RWD domain protein protein-coding 361.5-2 chr1 115050363 115050752 + 1.5 NA intron (NM_001308316, intron 6 of 6) intron (NM_001308316, intron 6 of 6) 16611 NM_001277991 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 183.833-4 chr10 88460908 88461081 + 1.5 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 122324 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 591.167 chr1 81558692 81559102 + 1.5 NA intron (NM_001366008, intron 2 of 26) intron (NM_001366008, intron 2 of 26) -1195 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 257.5 chr1 85142880 85143114 + 1.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR 9203 NR_039619 100616481 NR_039619 ENSG00000266110 MIR4423 mir-4423 microRNA 4423 ncRNA 241-12 chr2 76387704 76388056 + 1.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR -598085 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 279.333-3 chr14 39064345 39064644 + 1.5 NA intron (NM_006364, intron 11 of 19) (T)n|Simple_repeat|Simple_repeat -38646 NR_146545 105370458 NR_146545 ENSG00000258651 SEC23A-AS1 - SEC23A antisense RNA 1 ncRNA 553.167 chr7 80504696 80505531 + 1.5 NA intron (NM_001102386, intron 1 of 7) intron (NM_001102386, intron 1 of 7) 6951 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 264.833-7 chr4 114512735 114512923 + 1.5 NA Intergenic Intergenic -85573 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 168-77 chr7 125065662 125065875 + 1.5 NA intron (NR_125718, intron 4 of 10) intron (NR_125718, intron 4 of 10) -118801 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 186.667-72 chr6 61930682 61930901 + 1.5 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 355434 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 215.333-31 chr3 114976089 114976313 + 1.5 NA intron (NM_015642, intron 1 of 9) L2a|LINE|L2 -75576 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 188.667-35 chr3 56519676 56519853 + 1.5 NA Intergenic Intergenic -37392 NM_001353151 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 234-21 chr2 107547244 107547480 + 1.5 NA intron (NR_146968, intron 2 of 2) L1ME3D|LINE|L1 17943 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 156-4 chr1 70005265 70005426 + 1.5 NA intron (NM_001370785, intron 11 of 26) intron (NM_001370785, intron 11 of 26) 86023 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 299.167-2 chr14 83156291 83156671 + 1.5 NA Intergenic L1PA15|LINE|L1 513849 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 223.833-2 chr1 45407896 45408064 + 1.5 NA intron (NM_007170, intron 3 of 10) HAL1|LINE|L1 -67510 NM_001293192 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 210.167-21 chr4 179051795 179051968 + 1.5 NA Intergenic Intergenic -1143945 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 317.833-2 chr4 55479598 55479897 + 1.5 NA intron (NM_004898, intron 4 of 22) intron (NM_004898, intron 4 of 22) 66185 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 214.834-4 chr17 59073661 59073880 + 1.5 NA intron (NR_148346, intron 8 of 23) Tigger3b|DNA|TcMar-Tigger 33110 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 250-8 chr12 65295066 65295271 + 1.5 NA intron (NM_001193461, intron 1 of 6) intron (NM_001193461, intron 1 of 6) 16181 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 199.5-29 chr4 83425331 83425561 + 1.5 NA intron (NM_001297757, intron 13 of 16) intron (NM_001297757, intron 13 of 16) 30377 NM_133636 113510 Hs.480101 NM_133636 ENSG00000163312 HELQ HEL308 helicase, POLQ like protein-coding 299.833-8 chr7 40433761 40434011 + 1.5 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 298910 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 360.334-2 chr15 69122761 69123060 + 1.5 NA Intergenic L1ME4a|LINE|L1 -37687 NM_001324091 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 276.333-16 chr4 115548065 115548301 + 1.5 NA Intergenic MER4-int|LTR|ERV1 -434563 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 227.667-30 chr9 84382999 84383416 + 1.5 NA Intergenic Intergenic -14480 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 320.5-2 chr10 29672358 29672650 + 1.5 NA intron (NM_001323599, intron 2 of 38) intron (NM_001323599, intron 2 of 38) -37533 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 454.5-2 chr3 186752069 186752613 + 1.5 NA Intergenic FLAM_C|SINE|Alu -31236 NM_001967 1974 Hs.518475 NM_001967 ENSG00000156976 EIF4A2 BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II eukaryotic translation initiation factor 4A2 protein-coding 141.667-108 chr8 101227314 101227481 + 1.5 NA Intergenic L1ME2z|LINE|L1 -21333 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 189-25 chr3 26313407 26313595 + 1.5 NA Intergenic L3|LINE|CR1 -309305 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 211.667-41 chr8 60519454 60519652 + 1.5 NA intron (NM_001242644, intron 1 of 6) intron (NM_001242644, intron 1 of 6) 2566 NM_002865 5862 Hs.369017 NM_002865 ENSG00000104388 RAB2A LHX|RAB2 RAB2A, member RAS oncogene family protein-coding 239-4 chr10 82683386 82683923 + 1.5 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -450734 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 290.167-4 chr13 37013993 37014358 + 1.5 NA intron (NM_001014286, intron 23 of 25) L1MD|LINE|L1 13389 NM_181503 11340 Hs.294041 NM_181503 ENSG00000120699 EXOSC8 CIP3|EAP2|OIP2|PCH1C|RRP43|Rrp43p|bA421P11.3|p9 exosome component 8 protein-coding 210-22 chr3 21597033 21597232 + 1.5 NA intron (NM_024697, intron 2 of 7) intron (NM_024697, intron 2 of 7) 54343 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 420.333 chr17 60900058 60900437 + 1.5 NA intron (NM_001330413, intron 10 of 25) L1PB4|LINE|L1 222396 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 188.333-8 chr11 57141102 57141450 + 1.5 NA Intergenic L2a|LINE|L2 -40677 NM_001005210 219527 Hs.199853 NM_001005210 ENSG00000183908 LRRC55 - leucine rich repeat containing 55 protein-coding 299.833-2 chr2 30503458 30503765 + 1.5 NA intron (NM_001304445, intron 3 of 7) intron (NM_001304445, intron 3 of 7) 56365 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 237.166 chr18 35516532 35516844 + 1.5 NA Intergenic Tigger16a|DNA|TcMar-Tigger -18728 NM_001098817 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 304.5-3 chr10 90339863 90340213 + 1.5 NA Intergenic Intergenic 200767 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 202.667-30 chr3 15978419 15978636 + 1.5 NA Intergenic Intergenic 104756 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 299.5-11 chr5 82019061 82019332 + 1.5 NA intron (NM_031482, intron 2 of 7) UCON33|DNA|TcMar-Tigger 47173 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 260.5-5 chr14 73683256 73683485 + 1.5 NA intron (NM_001201366, intron 6 of 8) Tigger3b|DNA|TcMar-Tigger 31014 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 PNMA family member 1 protein-coding 122.667-12 chr10 94341585 94341817 + 1.5 NA exon (NM_022451, exon 14 of 21) exon (NM_022451, exon 14 of 21) 21238 NM_022451 64318 Hs.74899 NM_022451 ENSG00000173145 NOC3L AD24|C10orf117|FAD24 NOC3 like DNA replication regulator protein-coding 261-19 chr4 132232384 132232617 + 1.5 NA Intergenic HERV16-int|LTR|ERVL -358589 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 274.166 chr20 49498453 49498675 + 1.5 NA Intergenic MIR|SINE|MIR -15896 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 280.666-5 chr5 91874823 91875126 + 1.5 NA Intergenic Intergenic -491657 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 293-2 chr2 35582999 35583266 + 1.5 NA Intergenic Intergenic 111727 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 202.833-23 chr6 19345769 19345977 + 1.5 NA Intergenic L1MB8|LINE|L1 -103948 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 199-43 chr9 31234459 31234628 + 1.5 NA Intergenic Intergenic 146947 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 510.167 chr17 69259966 69260706 + 1.5 NA intron (NM_018672, intron 26 of 37) intron (NM_018672, intron 26 of 37) -15521 NM_080282 10349 Hs.25377 NM_080282 ENSG00000154263 ABCA10 EST698739 ATP binding cassette subfamily A member 10 protein-coding 281.833-4 chr18 2841120 2841408 + 1.5 NA Intergenic AluSz6|SINE|Alu -5742 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 278.167-12 chr9 73442893 73443157 + 1.5 NA Intergenic MIRb|SINE|MIR 291160 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 211-26 chr20 58369428 58369754 + 1.5 NA Intergenic AluY|SINE|Alu -19528 NM_004738 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 470.333 chr14 27609315 27609993 + 1.5 NA intron (NR_148991, intron 2 of 2) MER4B-int|LTR|ERV1 -2934 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 296.501 chr1 168768381 168768674 + 1.5 NA Intergenic L1ME5|LINE|L1 -18414 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 471 chr4 113860574 113860955 + 1.5 NA Intergenic Intergenic -98837 NM_172127 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 485.167 chr13 91328510 91329147 + 1.5 NA Intergenic Intergenic -18992 NR_027350 407975 Hs.24115 NR_027349 ENSG00000215417 MIR17HG C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92 miR-17-92a-1 cluster host gene ncRNA 163.167-5 chr11 84713023 84713209 + 1.5 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 7826 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 298.167-6 chr20 9433903 9434134 + 1.5 NA intron (NM_000933, intron 24 of 35) L1ME4b|LINE|L1 -80340 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 399.333 chr14 64292927 64293517 + 1.5 NA intron (NR_073496, intron 1 of 7) intron (NR_073496, intron 1 of 7) 1188 NM_001040275 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 265.333-25 chr9 88390720 88390998 + 1.5 NA intron (NM_006717, intron 1 of 5) intron (NM_006717, intron 1 of 5) 2415 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 310.167 chr16 3378504 3378860 + 1.5 NA Intergenic Intergenic -6014 NM_001190476 100463285 NM_001190476 ENSG00000232196 MTRNR2L4 HN4 MT-RNR2 like 4 protein-coding 192.333 chr1 88762336 88762560 + 1.5 NA intron (NM_006256, intron 3 of 21) intron (NM_006256, intron 3 of 21) -77244 NR_110682 101927891 Hs.637231 NR_110682 ENSG00000237505 PKN2-AS1 - PKN2 antisense RNA 1 ncRNA 210.667-49 chr6 45337322 45337538 + 1.5 NA intron (NM_001015051, intron 2 of 7) intron (NM_001015051, intron 2 of 7) 9100 NR_103533 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 375.666-2 chr9 28165423 28165769 + 1.5 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 553709 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 333.833 chr10 24121212 24121597 + 1.5 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -87387 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 190.5-18 chr14 65759174 65759421 + 1.5 NA Intergenic Intergenic 288195 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 268.5-10 chr21 30870950 30871219 + 1.5 NA Intergenic Intergenic 10496 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 145-2 chr1 30117970 30118121 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -80433 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 303.5-6 chr6 43549892 43550278 + 1.5 NA intron (NR_144392, intron 15 of 32) intron (NR_144392, intron 15 of 32) 25953 NM_020750 57510 Hs.203206 NM_020750 ENSG00000124571 XPO5 exp5 exportin 5 protein-coding 264.333-8 chr22 39161225 39161562 + 1.5 NA Intergenic L1MEd|LINE|L1 -8713 NM_001346743 23492 Hs.356416 NM_175709 ENSG00000100307 CBX7 - chromobox 7 protein-coding 182.5-11 chr14 53435810 53436013 + 1.5 NA Intergenic Intergenic 282557 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 284.667-14 chr5 59821988 59822399 + 1.5 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -53345 NM_001197218 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 257-15 chr6 62020232 62020478 + 1.5 NA intron (NR_146874, intron 3 of 13) L1M5|LINE|L1 265870 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 459.5 chr10 89453342 89453751 + 1.5 NA intron (NM_213606, intron 3 of 7) Tigger3a|DNA|TcMar-Tigger -2445 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 247.833-3 chr15 101659096 101659347 + 1.5 NA intron (NM_152334, intron 16 of 18) intron (NM_152334, intron 16 of 18) -6830 NM_001307960 80213 Hs.288912 NM_025141 ENSG00000184277 TM2D3 BLP2 TM2 domain containing 3 protein-coding 159.834-5 chr5 79029511 79029633 + 1.5 NA intron (NM_013391, intron 11 of 15) MIRb|SINE|MIR 40102 NR_104003 29958 Hs.655653 NM_013391 ENSG00000132837 DMGDH DMGDHD|ME2GLYDH dimethylglycine dehydrogenase protein-coding 197.167-39 chr4 94871256 94871840 + 1.5 NA intron (NM_001203, intron 1 of 12) intron (NM_001203, intron 1 of 12) 113593 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 115.333-110 chr9 80857093 80857205 + 1.5 NA Intergenic Intergenic 832386 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 226-21 chr5 75342374 75342640 + 1.5 NA intron (NM_001130996, intron 1 of 18) intron (NM_001130996, intron 1 of 18) 5287 NM_000859 3156 Hs.628096 NM_000859 ENSG00000113161 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 339.5-6 chr7 29011703 29012100 + 1.5 NA non-coding (NR_038965, exon 5 of 5) non-coding (NR_038965, exon 5 of 5) 31934 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 398.501 chr8 127026459 127026859 + 1.5 NA Intergenic LTR85b|LTR|Gypsy? 13505 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 278.333-15 chr6 56995717 56996087 + 1.5 NA intron (NM_152731, intron 3 of 6) L2a|LINE|L2 40795 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 215.5-37 chr7 1712363 1712529 + 1.5 NA intron (NM_001128636, intron 2 of 2) AluSx1|SINE|Alu 24327 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 234-22 chr2 152235699 152236051 + 1.5 NA Intergenic Intergenic -60112 NM_005843 10254 Hs.17200 NM_005843 ENSG00000115145 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule 2 protein-coding 267 chr1 40075659 40075855 + 1.5 NA intron (NM_001363695, intron 7 of 7) AluSx|SINE|Alu 21495 NM_001142604 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 527 chr8 109028286 109029144 + 1.5 NA Intergenic Intergenic -57913 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 153.333-9 chr10 65607150 65607551 + 1.5 NA intron (NR_120647, intron 2 of 5) intron (NR_120647, intron 2 of 5) 35925 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 380.333-4 chr5 168685204 168685529 + 1.5 NA intron (NM_003062, intron 31 of 35) intron (NM_003062, intron 31 of 35) -21561 NR_130737 101927969 Hs.661903 NR_130737 LOC101927969 - uncharacterized LOC101927969 ncRNA 229.667-20 chr2 179401154 179401370 + 1.5 NA Intergenic L1MB8|LINE|L1 -136430 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 294.167-7 chr3 192611519 192611728 + 1.5 NA intron (NM_004113, intron 2 of 5) MER5B|DNA|hAT-Charlie 96601 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 331.333-3 chr11 31416197 31416514 + 1.5 NA intron (NM_181706, intron 3 of 4) intron (NM_181706, intron 3 of 4) 46495 NM_181706 120526 Hs.187269 NM_181706 ENSG00000170946 DNAJC24 DPH4|JJJ3|ZCSL3 DnaJ heat shock protein family (Hsp40) member C24 protein-coding 227.333-3 chr1 199485522 199485794 + 1.5 NA Intergenic Intergenic 337060 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 413.666 chr2 159655319 159655886 + 1.5 NA Intergenic L1M4a1|LINE|L1 -39001 NM_001289975 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 375.333-4 chr3 32589262 32589614 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -18514 NM_001329135 51143 Hs.529495 NM_016141 ENSG00000144635 DYNC1LI1 DLC-A|DNCLI1|LIC1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 247.5-24 chr4 122221930 122222212 + 1.5 NA intron (NM_015312, intron 20 of 83) intron (NM_015312, intron 20 of 83) 51468 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 336-10 chr8 88268777 88269164 + 1.5 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 58513 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 397.5-2 chr3 106180026 106180347 + 1.5 NA Intergenic Intergenic -310785 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 291.667-17 chr3 64582468 64582757 + 1.5 NA intron (NM_001318781, intron 27 of 38) MER20|DNA|hAT-Charlie 21266 NR_110150 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 344-4 chr5 95993853 95994290 + 1.5 NA intron (NR_130776, intron 1 of 4) L1ME1|LINE|L1 32070 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 412.833-2 chr3 123364647 123365128 + 1.5 NA intron (NM_183357, intron 1 of 20) intron (NM_183357, intron 1 of 20) 51455 NM_001199642 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 225.167-32 chr9 11134718 11134874 + 1.5 NA Intergenic Charlie5|DNA|hAT-Charlie 521590 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 173-11 chr10 96815420 96815581 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 13264 NR_030338 693192 NR_030338 ENSG00000207976 MIR607 MIRN607|hsa-mir-607 microRNA 607 ncRNA 285.667-3 chr20 16303955 16304194 + 1.5 NA intron (NM_024704, intron 25 of 25) intron (NM_024704, intron 25 of 25) 269374 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 220-26 chr8 139451765 139451979 + 1.5 NA Intergenic L1MEi|LINE|L1 251251 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 247.333-27 chr8 108393187 108393486 + 1.5 NA Intergenic Intergenic -50247 NM_001329493 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 439.333-2 chr8 84048109 84048569 + 1.5 NA Intergenic L1ME4b|LINE|L1 -134448 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 308-7 chr5 92629250 92629729 + 1.5 NA Intergenic L1ME1|LINE|L1 941854 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 432.833 chr14 49625699 49626231 + 1.5 NA exon (NM_018139, exon 3 of 3) exon (NM_018139, exon 3 of 3) 5166 NM_002408 4247 Hs.93338 NM_002408 ENSG00000168282 MGAT2 CDG2A|CDGS2|GLCNACTII|GNT-II|GNT2 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding 226-4 chr14 51447401 51447564 + 1.5 NA Intergenic Intergenic -41646 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 211.833-29 chr8 132819174 132819440 + 1.5 NA intron (NM_001277196, intron 11 of 19) intron (NM_001277196, intron 11 of 19) 43919 NM_001277196 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 218.333-14 chr14 44615542 44615747 + 1.5 NA Intergenic Intergenic 108235 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 253.667-11 chr3 84409820 84410073 + 1.5 NA Intergenic L1M5|LINE|L1 459629 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 293.167-2 chr13 96879925 96880344 + 1.5 NA Intergenic Intergenic 104038 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 359.833-2 chr15 97427842 97428142 + 1.5 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 93819 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 221-28 chr7 3965265 3965521 + 1.5 NA intron (NM_152744, intron 9 of 44) MIRc|SINE|MIR -164292 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 265.5-9 chr3 104647235 104647507 + 1.5 NA Intergenic Intergenic -719342 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 162.5-12 chr11 45778579 45778737 + 1.5 NA Intergenic L1ME1|LINE|L1 7226 NR_027134 374387 Hs.632142 NM_199137 ENSG00000205106 LINC02716 DKFZp779M0652 long intergenic non-protein coding RNA 2716 ncRNA 159.833-41 chr6 47282747 47282881 + 1.5 NA intron (NM_014452, intron 3 of 5) L1ME4c|LINE|L1 27091 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 209-14 chr10 131027681 131027946 + 1.5 NA Intergenic Intergenic -65145 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 215-24 chr4 64899440 64899740 + 1.5 NA Intergenic Intergenic 104910 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 294.167-12 chr9 97905471 97905918 + 1.5 NA intron (NM_001330725, intron 5 of 5) intron (NM_001330725, intron 5 of 5) 16876 NM_001330725 51531 Hs.9196 NM_016481 ENSG00000136932 TRMO C9orf156|HSPC219|NAP1 tRNA methyltransferase O protein-coding 354.5-5 chr5 29615343 29615775 + 1.5 NA Intergenic L1M3|LINE|L1 -219583 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 196-17 chr12 38701071 38701286 + 1.5 NA intron (NM_153634, intron 14 of 19) L1MB8|LINE|L1 204413 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 468 chr13 63672927 63673593 + 1.5 NA intron (NR_047011, intron 3 of 3) intron (NR_047011, intron 3 of 3) -64175 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 520.667 chr15 56725691 56726102 + 1.5 NA intron (NM_001002843, intron 1 of 20) intron (NM_001002843, intron 1 of 20) 8190 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 148.333-5 chr1 152258019 152258141 + 1.5 NA Intergenic MLT2B3|LTR|ERVL -33884 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 249.5-31 chr8 114384374 114384639 + 1.5 NA Intergenic Intergenic -947567 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 181.5-62 chr8 131960180 131960424 + 1.5 NA intron (NR_136616, intron 8 of 23) MER8|DNA|TcMar-Tigger 43529 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 180.167-37 chr3 187435886 187436350 + 1.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -10928 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 183.667-31 chr17 62970437 62970613 + 1.5 NA intron (NM_025185, intron 1 of 25) intron (NM_025185, intron 1 of 25) 4290 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 485.667 chr11 78296098 78296728 + 1.5 NA intron (NM_080491, intron 1 of 9) Tigger17a|DNA|TcMar-Tigger 45467 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 252.667-28 chr8 122982546 122982840 + 1.5 NA Intergenic Intergenic 43079 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 303.5-3 chr17 72124683 72125083 + 1.5 NA 3' UTR (NM_000346, exon 3 of 3) 3' UTR (NM_000346, exon 3 of 3) 3863 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 216.167-3 chr1 194668662 194668839 + 1.5 NA Intergenic L1MA3|LINE|L1 1364005 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 198.5-16 chr17 18891297 18891543 + 1.5 NA intron (NM_001353099, intron 8 of 11) intron (NM_001353099, intron 8 of 11) 25951 NM_001243940 5636 Hs.632236 NM_002767 ENSG00000141127 PRPSAP2 PAP41 phosphoribosyl pyrophosphate synthetase associated protein 2 protein-coding 216.167-9 chr15 57764865 57765099 + 1.5 NA Intergenic Intergenic 58268 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 230.167-6 chr16 80768756 80768958 + 1.5 NA intron (NM_152342, intron 1 of 6) MIR|SINE|MIR 35741 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 293.333-6 chr16 906630 907102 + 1.5 NA intron (NR_147885, intron 4 of 11) L1M5|LINE|L1 -14167 NR_110946 101929387 Hs.737087 NR_110945 ENSG00000260439 LMF1-AS1 LA16c-366D3.1 LMF1 antisense RNA 1 ncRNA 278.167-4 chr19 30995342 30995623 + 1.5 NA Intergenic AluJr|SINE|Alu -172028 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 200-51 chr4 56938760 56938918 + 1.5 NA Intergenic Intergenic 29926 NM_001193508 5978 Hs.307836 NM_005612 ENSG00000084093 REST DFNA27|GINGF5|HGF5|NRSF|WT6|XBR RE1 silencing transcription factor protein-coding 194-59 chr9 32611955 32612123 + 1.5 NA Intergenic Intergenic 23630 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 163.834-7 chrX 26397274 26397502 + 1.5 NA Intergenic Intergenic -160949 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 163.333-47 chr22 27059335 27059543 + 1.5 NA intron (NM_001318329, intron 1 of 1) intron (NM_001318329, intron 1 of 1) 1079 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 165-62 chr8 110858846 110859040 + 1.5 NA Intergenic L1MC3|LINE|L1 168490 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 251.5-13 chr3 79101841 79102070 + 1.5 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) -82496 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 332.167-6 chr5 10866444 10866999 + 1.5 NA Intergenic Intergenic -105487 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 241-11 chr18 79430276 79430547 + 1.5 NA intron (NM_001278672, intron 2 of 8) AluSx1|SINE|Alu 30112 NM_001278672 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 253.5-22 chr6 63207687 63208284 + 1.5 NA Intergenic Intergenic 111992 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 381.333 chr1 109592281 109592767 + 1.5 NA 3' UTR (NM_006496, exon 9 of 9) 3' UTR (NM_006496, exon 9 of 9) -6369 NR_029583 406974 NR_029583 ENSG00000284443 MIR197 MIRN197|miR-197|miRNA197 microRNA 197 ncRNA 506.5 chr5 35518211 35518799 + 1.5 NA Intergenic Intergenic -99358 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 346.833 chr1 40945495 40945922 + 1.5 NA Intergenic L1M5|LINE|L1 -33988 NM_001905 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|GATD5|IMD24 CTP synthase 1 protein-coding 373-2 chr13 111354757 111355087 + 1.5 NA Intergenic L1MD2|LINE|L1 34280 NM_152324 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 197.167-21 chr18 63770070 63770266 + 1.5 NA intron (NM_001040147, intron 1 of 7) intron (NM_001040147, intron 1 of 7) -5207 NM_001261831 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 372.833-3 chr5 52224338 52224701 + 1.5 NA Intergenic L1ME4b|LINE|L1 216488 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 290.333-2 chr10 87831105 87831449 + 1.5 NA intron (NR_028492, intron 2 of 3) L3|LINE|CR1 12964 NR_028492 142913 Hs.369431 NR_028492 ENSG00000223820 CFL1P1 CFLP1 cofilin 1 pseudogene 1 pseudo 357.5-5 chr6 90963393 90963704 + 1.5 NA Intergenic L1M5|LINE|L1 -376476 NM_145331 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 205.167-41 chr8 118437329 118437536 + 1.5 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -183569 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 354-3 chr9 30631257 30631612 + 1.5 NA Intergenic L1M5|LINE|L1 -222980 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 329.5-6 chr14 45428390 45428718 + 1.5 NA Intergenic Intergenic -175352 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 119.833-14 chr10 17900525 17900652 + 1.5 NA intron (NM_002438, intron 24 of 29) intron (NM_002438, intron 24 of 29) -51251 NM_152725 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 130.333-85 chr7 36525105 36525304 + 1.5 NA intron (NM_001177507, intron 18 of 19) intron (NM_001177507, intron 18 of 19) 74916 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 347 chr1 199061137 199061463 + 1.5 NA intron (NR_126351, intron 2 of 2) L1MC1|LINE|L1 -42336 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 381-3 chr8 137160838 137161485 + 1.5 NA Intergenic Intergenic 252427 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 369-2 chr21 31157016 31157552 + 1.5 NA intron (NM_001353690, intron 16 of 27) MER6|DNA|TcMar-Tigger 3656 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 128.167-78 chr7 85148330 85148439 + 1.5 NA Intergenic Intergenic -26453 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 344.167-4 chr4 82412553 82412829 + 1.5 NA Intergenic L1M4|LINE|L1 17534 NM_001207000 9987 Hs.527105 NM_005463 ENSG00000152795 HNRNPDL HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|LGMDD3|laAUF1 heterogeneous nuclear ribonucleoprotein D like protein-coding 208.5-3 chr1 72940828 72941063 + 1.5 NA Intergenic Intergenic -365225 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 145.5-20 chr14 38569296 38569445 + 1.5 NA Intergenic Intergenic -313226 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 155.333-50 chr2 99962891 99963093 + 1.5 NA intron (NM_001025108, intron 6 of 23) L1MDa|LINE|L1 142591 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 315-3 chr18 8016115 8016474 + 1.5 NA intron (NM_002845, intron 7 of 30) AluSz|SINE|Alu 350740 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 227-2 chr10 43152489 43152789 + 1.5 NA intron (NM_018590, intron 1 of 7) intron (NM_018590, intron 1 of 7) -2258 NM_001319654 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 222.5-22 chr4 80044353 80044598 + 1.5 NA intron (NM_001286781, intron 7 of 16) intron (NM_001286781, intron 7 of 16) 28754 NM_001286781 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 360.5-5 chr16 12301380 12301844 + 1.5 NA intron (NM_032167, intron 15 of 20) L2a|LINE|L2 324878 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 175-35 chr22 24726467 24726626 + 1.5 NA intron (NM_001008496, intron 16 of 20) AluY|SINE|Alu -37955 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 218-40 chr6 44438812 44438972 + 1.5 NA intron (NM_001253, intron 14 of 15) L1MB8|LINE|L1 3251 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 315.833 chr18 3167809 3168175 + 1.5 NA intron (NM_019856, intron 9 of 36) intron (NM_019856, intron 9 of 36) 51976 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 168.333-20 chr15 98877781 98877977 + 1.5 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 93453 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 218.667-41 chr7 92061949 92062228 + 1.5 NA intron (NM_147185, intron 23 of 49) intron (NM_147185, intron 23 of 49) 72389 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 242.333-16 chr5 64389691 64389945 + 1.5 NA Intergenic L1MD2|LINE|L1 -116197 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 261.5-14 chr22 20672308 20672607 + 1.5 NA Intergenic Intergenic -17098 NR_024592 266697 Hs.558711 NR_024592 POM121L4P - POM121 transmembrane nucleoporin like 4, pseudogene pseudo 278-5 chr15 39267025 39267245 + 1.5 NA Intergenic Charlie10|DNA|hAT-Charlie 16466 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 338.667-6 chr8 81319559 81320030 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 39258 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 412.5-7 chr8 90624171 90624686 + 1.5 NA 3' UTR (NM_001146273, exon 2 of 2) 3' UTR (NM_001146273, exon 2 of 2) -18365 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 181.333-35 chr2 214512108 214512309 + 1.5 NA intron (NR_047698, intron 1 of 3) intron (NR_047698, intron 1 of 3) 2026 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 467.501 chr22 28538202 28538829 + 1.5 NA intron (NM_001145418, intron 2 of 22) L1ME4b|LINE|L1 78646 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 236.834-2 chr10 51289723 51290033 + 1.5 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -9695 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 243.5-17 chr2 234042178 234042358 + 1.5 NA Intergenic L1MB1|LINE|L1 -8434 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 242.333-26 chr8 116159248 116159486 + 1.5 NA intron (NR_046215, intron 4 of 13) intron (NR_046215, intron 4 of 13) 165692 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 151-20 chr14 46884474 46884640 + 1.5 NA intron (NM_001113498, intron 10 of 16) intron (NM_001113498, intron 10 of 16) -232776 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 233-19 chr5 125591131 125591381 + 1.5 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 97995 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 218.667-48 chr9 30793749 30794001 + 1.5 NA Intergenic Intergenic -385421 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 289-2 chr2 46617225 46617491 + 1.5 NA promoter-TSS (NM_002643) promoter-TSS (NM_002643) 143 NM_014171 9419 Hs.133998 NM_014171 ENSG00000119878 CRIPT HSPC139|SSMDF CXXC repeat containing interactor of PDZ3 domain protein-coding 150-54 chr3 165385538 165385721 + 1.5 NA intron (NR_125764, intron 3 of 5) Tigger3a|DNA|TcMar-Tigger 178669 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 390.667-2 chr16 64787231 64787697 + 1.5 NA Intergenic Intergenic 334599 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 363.5-3 chr3 158129937 158130245 + 1.5 NA intron (NM_001271834, intron 3 of 8) MLT1A0|LTR|ERVL-MaLR 20002 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 188.833-24 chr4 33177853 33178067 + 1.5 NA Intergenic Intergenic 826922 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 151.5-55 chr4 72902177 72902326 + 1.5 NA Intergenic Intergenic 167465 NM_001297732 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 216.167-28 chr7 79046783 79047063 + 1.5 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 37935 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 134.333-62 chr2 123414290 123414414 + 1.5 NA Intergenic L1MD1|LINE|L1 -340871 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 220.5-36 chr8 71714217 71714463 + 1.5 NA Intergenic Intergenic -128783 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 290.834-9 chr9 129916655 129917048 + 1.5 NA intron (NM_001363755, intron 10 of 15) intron (NM_001363755, intron 10 of 15) 47246 NR_106914 102466750 NR_106914 ENSG00000276124 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 302-10 chr10 115671105 115671415 + 1.5 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 523529 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 172.667-78 chr8 119203534 119203657 + 1.5 NA Intergenic L1MEc|LINE|L1 -4768 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 165-7 chr10 31162240 31162463 + 1.5 NA Intergenic L1MA9|LINE|L1 -25532 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 395-3 chr4 83832409 83832790 + 1.5 NA Intergenic Intergenic 296491 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 129.5-62 chr3 147253115 147253232 + 1.5 NA Intergenic Intergenic 139257 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 184.833-24 chr4 57382331 57382545 + 1.5 NA Intergenic X7C_LINE|LINE|CR1 -43434 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 225.834 chr4 53760232 53760499 + 1.5 NA Intergenic L1MA7|LINE|L1 64464 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 147.667-20 chr14 59506017 59506145 + 1.5 NA TTS (NM_001098625) TTS (NM_001098625) 21564 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 306.167-5 chr8 91243730 91244255 + 1.5 NA intron (NM_001282357, intron 2 of 18) intron (NM_001282357, intron 2 of 18) -5327 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 250-28 chr8 111808464 111808778 + 1.5 NA Intergenic Intergenic 431982 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 223.5-23 chr5 56911070 56911228 + 1.5 NA intron (NR_136557, intron 1 of 4) intron (NR_136557, intron 1 of 4) 1087 NM_001323018 133383 Hs.85950 NM_153706 ENSG00000155542 SETD9 C5orf35 SET domain containing 9 protein-coding 261-25 chrX 73995905 73996254 + 1.5 NA intron (NR_024582, intron 3 of 4) L1M4b|LINE|L1 51755 NR_024582 554203 Hs.648316 NR_024582 ENSG00000225470 JPX DCBALD06|ENOX|LINC00183|NCRNA00183 JPX transcript, XIST activator ncRNA 548 chr6 48274041 48274986 + 1.5 NA Intergenic Intergenic -205824 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 441.167 chr14 19883301 19883801 + 1.5 NA Intergenic Intergenic 7283 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 282.333-18 chr9 83211155 83211499 + 1.5 NA Intergenic Intergenic 55941 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 186.167-7 chr10 52599281 52599427 + 1.5 NA intron (NR_155748, intron 1 of 2) A-rich|Low_complexity|Low_complexity -128821 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 400.333-2 chr6 114457649 114458086 + 1.5 NA Intergenic L4_C_Mam|LINE|RTE-X -394990 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 424 chr1 182159748 182160302 + 1.5 NA Intergenic L1MB3|LINE|L1 -98313 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 174.667 chr1 23973754 23973905 + 1.5 NA intron (NM_054016, intron 3 of 5) intron (NM_054016, intron 3 of 5) 6498 NM_006625 10772 Hs.3530 NM_006625 ENSG00000188529 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine and arginine rich splicing factor 10 protein-coding 228.333-2 chr1 190481818 190482003 + 1.5 NA TTS (NR_110716) TTS (NR_110716) 3359 NR_110717 101929120 Hs.602301 NR_110716 LINC01351 - long intergenic non-protein coding RNA 1351 ncRNA 131.333-89 chr5 115684398 115684501 + 1.5 NA Intergenic Intergenic -11797 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 301.667-12 chr7 15393565 15393790 + 1.5 NA intron (NM_001004320, intron 6 of 12) L3|LINE|CR1 168338 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 231.167-7 chr16 49449917 49450183 + 1.5 NA Intergenic L1ME1|LINE|L1 68535 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 513.667 chr4 31669473 31669830 + 1.5 NA Intergenic L2c|LINE|L2 163107 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 218-28 chr20 24635166 24635371 + 1.5 NA intron (NM_024893, intron 3 of 3) intron (NM_024893, intron 3 of 3) 165307 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 226.5-32 chr7 90242113 90242512 + 1.5 NA Intergenic Intergenic -2862 NM_001363438 79846 Hs.521014 NM_024788 ENSG00000105792 CFAP69 C7orf63|FAP69|SPGF24 cilia and flagella associated protein 69 protein-coding 345.333 chr1 50018142 50018481 + 1.5 NA intron (NM_001323575, intron 1 of 12) intron (NM_001323575, intron 1 of 12) 5643 NM_001323573 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 209.833-17 chr3 193388715 193388890 + 1.5 NA Intergenic Intergenic -10049 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 179.333-25 chr18 22570740 22570969 + 1.5 NA Intergenic HAL1|LINE|L1 -152939 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 207-42 chr5 148104138 148104343 + 1.5 NA intron (NM_006846, intron 15 of 32) MIR|SINE|MIR 40260 NM_001127698 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 141.5-4 chr1 187843412 187843583 + 1.5 NA Intergenic MamGyp-int|LTR|Gypsy 399869 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 180.667-48 chr3 90022935 90023115 + 1.5 NA Intergenic MLT1F1|LTR|ERVL-MaLR 915404 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 301.5-11 chr5 26008639 26008903 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR 817818 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 185-48 chr7 77181759 77181948 + 1.5 NA intron (NM_020879, intron 2 of 18) L1MB2|LINE|L1 17966 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 163.5-23 chr15 46516048 46516217 + 1.5 NA Intergenic L1ME2|LINE|L1 -667957 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 210.5-20 chr18 50859541 50859681 + 1.5 NA Intergenic AluSx3|SINE|Alu -19507 NM_002396 4200 Hs.233119 NM_002396 ENSG00000082212 ME2 ODS1 malic enzyme 2 protein-coding 237.5-22 chr5 26201284 26201544 + 1.5 NA Intergenic Intergenic 837172 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 283.5-6 chr14 68708877 68709155 + 1.5 NA Intergenic Intergenic -80229 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 397.5-3 chr8 59533251 59533670 + 1.5 NA Intergenic Intergenic 414250 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 133.833-59 chr5 12784771 12784951 + 1.5 NA intron (NR_033383, intron 3 of 3) intron (NR_033383, intron 3 of 3) 117002 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 235-28 chr6 113424862 113425105 + 1.5 NA Intergenic Charlie9|DNA|hAT-Charlie 8464 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 193.5-32 chr3 47057854 47058002 + 1.5 NA intron (NR_146158, intron 15 of 21) intron (NR_146158, intron 15 of 21) 46386 NR_024046 100129354 Hs.201522 NR_024046 NRADDP - neurotrophin receptor associated death domain, pseudogene pseudo 196.167 chr1 157713025 157713213 + 1.5 NA Intergenic L1ME3B|LINE|L1 -12350 NR_135215 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 256.5-36 chr8 27831864 27832273 + 1.5 NA intron (NM_001278945, intron 2 of 7) L1MEc|LINE|L1 5749 NM_018492 55872 Hs.104741 NM_018492 ENSG00000168078 PBK CT84|HEL164|Nori-3|SPK|TOPK PDZ binding kinase protein-coding 283.5-15 chr8 87192394 87192787 + 1.5 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 326175 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 293.667-11 chr5 152730730 152730977 + 1.5 NA intron (NR_109877, intron 3 of 4) MER44A|DNA|TcMar-Tigger 241496 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 218.5-6 chr11 79567202 79567698 + 1.5 NA Intergenic Intergenic -126420 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 279.499-2 chr8 85011660 85011865 + 1.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -95476 NM_001349637 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 212.333-15 chr18 21208227 21208430 + 1.5 NA Intergenic HAL1|LINE|L1 -33914 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 185-8 chr11 36380536 36380741 + 1.5 NA intron (NM_024841, intron 2 of 9) intron (NM_024841, intron 2 of 9) 4653 NM_001160168 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 311.333-12 chr8 88710795 88711133 + 1.5 NA Intergenic MER34-int|LTR|ERV1 -383481 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 208.167-2 chr10 15599080 15599281 + 1.5 NA intron (NM_001291494, intron 19 of 28) intron (NM_001291494, intron 19 of 28) 120742 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 280-12 chr3 96058631 96058945 + 1.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -301176 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 225-36 chr8 52263348 52263575 + 1.5 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) -8969 NM_001352842 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 158.333-35 chr17 63006296 63006471 + 1.5 NA intron (NM_025185, intron 1 of 25) L1ME2z|LINE|L1 40148 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 234.833-11 chr18 682075 682364 + 1.5 NA intron (NM_001318760, intron 9 of 13) Tigger3a|DNA|TcMar-Tigger -23928 NM_001012716 494514 Hs.274959 NM_001012716 TYMSOS C18orf56 TYMS opposite strand protein-coding 343.5-10 chr8 49549282 49549617 + 1.5 NA Intergenic L1MEc|LINE|L1 -37269 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 166.5-16 chr12 127542172 127542333 + 1.5 NA Intergenic Intergenic 94215 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 810.333 chr7 8459012 8460122 + 1.5 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 25958 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 198.667-32 chr21 29584193 29584521 + 1.5 NA intron (NM_000830, intron 12 of 16) intron (NM_000830, intron 12 of 16) -11683 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 289.333-10 chr4 85844141 85844408 + 1.5 NA intron (NM_001287805, intron 1 of 7) L2a|LINE|L2 16337 NM_001287805 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 128.167-30 chr15 46554604 46554750 + 1.5 NA Intergenic L1MC4|LINE|L1 -629412 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 162-37 chr2 203913095 203913275 + 1.5 NA Intergenic Intergenic -23563 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 380.167-4 chr17 66319024 66319755 + 1.5 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 16776 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 506.333 chr14 57435962 57436827 + 1.5 NA Intergenic L1MA3|LINE|L1 45808 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 188.667 chr1 48586033 48586160 + 1.5 NA intron (NM_001323575, intron 11 of 12) intron (NM_001323575, intron 11 of 12) -113888 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 422 chr12 34437475 34438007 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 415245 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 178.5-17 chr11 133129962 133130269 + 1.5 NA intron (NM_001012393, intron 1 of 7) L1MEc|LINE|L1 -186347 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 210.333-28 chr4 41264995 41265266 + 1.5 NA intron (NM_004181, intron 8 of 8) MER58A|DNA|hAT-Charlie 8202 NM_004181 7345 Hs.518731 NM_004181 ENSG00000154277 UCHL1 HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|Uch-L1 ubiquitin C-terminal hydrolase L1 protein-coding 276.833-9 chr9 12768994 12769185 + 1.5 NA intron (NR_125775, intron 2 of 3) intron (NR_125775, intron 2 of 3) -5931 NM_203403 286343 Hs.445356 NM_203403 ENSG00000153714 LURAP1L C9orf150|HYST0841|LRAP35b|bA3L8.2 leucine rich adaptor protein 1 like protein-coding 177-21 chr16 49766026 49766202 + 1.5 NA intron (NM_001271620, intron 2 of 7) intron (NM_001271620, intron 2 of 7) 56624 NM_015069 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 180.167-10 chr12 47367917 47368186 + 1.5 NA Intergenic L2a|LINE|L2 -3782 NR_039715 100616478 NR_039715 ENSG00000264906 MIR4494 - microRNA 4494 ncRNA 169.167-6 chr11 60131831 60131998 + 1.5 NA Intergenic Intergenic 43250 NM_000139 2206 Hs.386748 NM_000139 ENSG00000149534 MS4A2 APY|ATOPY|FCER1B|FCERI|IGEL|IGER|IGHER|MS4A1 membrane spanning 4-domains A2 protein-coding 218.501 chr16 76147462 76147661 + 1.5 NA Intergenic Intergenic -129840 NM_001322179 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 237.167-9 chr18 924928 925109 + 1.5 NA Intergenic Intergenic 2975 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 393.5-2 chr5 25730233 25730523 + 1.5 NA Intergenic L1M5|LINE|L1 539425 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 266.333-19 chr7 102877087 102877532 + 1.5 NA intron (NR_105043, intron 17 of 20) intron (NR_105043, intron 17 of 20) -35691 NM_001031692 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 244.333-14 chr2 182298483 182298788 + 1.5 NA intron (NM_005019, intron 1 of 14) ERV3-16A3_I-int|LTR|ERVL -56572 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 189-10 chr2 32914476 32914710 + 1.5 NA intron (NR_027099, intron 10 of 10) AluSq2|SINE|Alu -12534 NR_027097 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 178.5-35 chr17 55927466 55927674 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 176465 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 314.5-11 chr5 158745846 158746240 + 1.5 NA intron (NM_001324107, intron 10 of 15) intron (NM_001324107, intron 10 of 15) -336270 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 348-3 chr14 65713506 65713819 + 1.5 NA intron (NR_038167, intron 7 of 8) L1MA3|LINE|L1 242560 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 210 chr1 201247285 201247491 + 1.5 NA Intergenic L1ME3D|LINE|L1 -36064 NM_000299 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 369 chr15 63322593 63322938 + 1.5 NA TTS (NM_001293642) TTS (NM_001293642) 45160 NM_031301 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 284-6 chr20 14825660 14825917 + 1.5 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 103730 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 342.167-2 chr2 147855952 147856260 + 1.5 NA intron (NM_001278579, intron 2 of 11) intron (NM_001278579, intron 2 of 11) 11077 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 256.5-5 chr11 85561462 85561649 + 1.5 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 65715 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 203.333-15 chr19 47710382 47710755 + 1.5 NA Intergenic AluJr|SINE|Alu -2854 NM_014601 30846 Hs.744963 NM_014601 ENSG00000024422 EHD2 PAST2 EH domain containing 2 protein-coding 205.167-20 chr17 68672353 68672562 + 1.5 NA intron (NR_110825, intron 3 of 4) intron (NR_110825, intron 3 of 4) 44303 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 270.333-4 chr14 37116254 37116624 + 1.5 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -55587 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 411.334-3 chr15 86451045 86451490 + 1.5 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -134299 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 217.667-25 chr2 192138471 192138659 + 1.5 NA intron (NM_001305134, intron 4 of 9) L3|LINE|CR1 56368 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 391 chr13 64560724 64561022 + 1.5 NA Intergenic Intergenic -484862 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 304.667-13 chr4 135106145 135106494 + 1.5 NA Intergenic Intergenic 17240 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 340.167-9 chr6 56161170 56161463 + 1.5 NA intron (NM_030820, intron 9 of 29) intron (NM_030820, intron 9 of 29) -69654 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 251-28 chr8 25709842 25710090 + 1.5 NA Intergenic L1ME3F|LINE|L1 250733 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 282.333-14 chr4 158343819 158344117 + 1.5 NA Intergenic Intergenic 133482 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 274-4 chr15 79423458 79423665 + 1.5 NA Intergenic L2b|LINE|L2 -8955 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 351.333-6 chr3 98907814 98908285 + 1.5 NA Intergenic LTR85c|LTR|Gypsy? -6354 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 250.5 chr1 238148337 238148646 + 1.5 NA Intergenic Intergenic -257569 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 440.5-2 chr4 26685133 26685743 + 1.5 NA intron (NM_001292054, intron 9 of 17) Tigger9a|DNA|TcMar-Tigger 101354 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 317-9 chr8 122622184 122622658 + 1.5 NA Intergenic Intergenic -53777 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 247.5-20 chr3 38128886 38129145 + 1.5 NA intron (NM_001130410, intron 5 of 9) intron (NM_001130410, intron 5 of 9) 8112 NM_001607 30 Hs.643487 NM_001607 ENSG00000060971 ACAA1 ACAA|PTHIO|THIO acetyl-CoA acyltransferase 1 protein-coding 358.167 chr14 54857251 54857615 + 1.5 NA intron (NM_001024071, intron 3 of 5) intron (NM_001024071, intron 3 of 5) 20760 NR_036194 100422984 NR_036194 ENSG00000265432 MIR4308 - microRNA 4308 ncRNA 208-44 chr8 137320796 137320975 + 1.5 NA Intergenic Intergenic 92703 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 296.666-6 chr6 40911000 40911357 + 1.5 NA intron (NR_110873, intron 1 of 5) L2c|LINE|L2 112102 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 165-24 chr18 73175891 73176157 + 1.5 NA intron (NR_034133, intron 3 of 5) intron (NR_034133, intron 3 of 5) 88474 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 247.5-31 chrX 14098834 14099076 + 1.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR -69063 NM_001042480 54960 Hs.592237 NM_017856 ENSG00000046647 GEMIN8 FAM51A1 gem nuclear organelle associated protein 8 protein-coding 169.5-13 chr12 7050267 7050403 + 1.5 NA Intergenic L1PA8A|LINE|L1 -10383 NM_001734 716 Hs.458355 NM_001734 ENSG00000182326 C1S EDSPD2 complement C1s protein-coding 412.166 chr20 17400812 17401657 + 1.5 NA intron (NM_002594, intron 5 of 11) MLT1A0|LTR|ERVL-MaLR 130145 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 201-42 chr7 90084097 90084279 + 1.5 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -35212 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 186.833-33 chr4 97805900 97806296 + 1.5 NA intron (NM_174952, intron 9 of 10) L1PA16|LINE|L1 337378 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 221.833-14 chr2 228126311 228126584 + 1.5 NA intron (NM_030623, intron 2 of 10) intron (NM_030623, intron 2 of 10) 55198 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 267-4 chr16 60429754 60429964 + 1.5 NA Intergenic FLAM_A|SINE|Alu -70066 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 323.333-8 chr4 30732840 30733493 + 1.5 NA TTS (NM_002589) TTS (NM_002589) 12797 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 334.5-8 chr2 149737436 149737793 + 1.5 NA intron (NR_110240, intron 1 of 2) Charlie7|DNA|hAT-Charlie 121577 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 290.5-7 chr15 77067705 77068074 + 1.5 NA intron (NM_198902, intron 1 of 5) intron (NM_198902, intron 1 of 5) 3220 NM_198902 10099 Hs.744863 NM_005724 ENSG00000140391 TSPAN3 TM4-A|TM4SF8|TSPAN-3 tetraspanin 3 protein-coding 210.5-25 chr2 79838466 79838654 + 1.5 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 28023 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 182.833-25 chr2 49432335 49432550 + 1.5 NA Intergenic Intergenic -277915 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 211-9 chr10 109335188 109335339 + 1.5 NA Intergenic L1MEf|LINE|L1 587983 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 186.167-25 chr3 12366422 12366559 + 1.5 NA intron (NM_015869, intron 1 of 6) L1MC1|LINE|L1 14988 NM_015869 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 273-8 chr3 153461747 153461985 + 1.5 NA intron (NR_146713, intron 5 of 6) intron (NR_146713, intron 5 of 6) -22629 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 289.834-6 chr3 188741891 188742200 + 1.5 NA intron (NM_001167672, intron 6 of 9) L1ME1|LINE|L1 53264 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 144.667-49 chr2 21531912 21532061 + 1.5 NA Intergenic L1ME1|LINE|L1 178666 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 178.667-53 chr5 89562059 89562257 + 1.5 NA Intergenic Intergenic 454562 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 221.5-9 chr12 1807516 1807768 + 1.5 NA intron (NM_172364, intron 29 of 37).2 intron (NM_172364, intron 29 of 37).2 -12625 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 342.5-5 chr13 75898528 75898884 + 1.5 NA Intergenic Intergenic 21820 NR_126373 104326189 Hs.671216 NR_126373 ENSG00000223458 LMO7DN-IT1 C13orf45-IT1|TCONS_00021569 LMO7DN intronic transcript 1 ncRNA 174.5-9 chr13 72825427 72825633 + 1.5 NA intron (NR_146206, intron 6 of 16) MER8|DNA|TcMar-Tigger 43397 NM_001349655 10464 Hs.441926 NM_006346 ENSG00000083535 PIBF1 C13orf24|CEP90|JBTS33|PIBF progesterone immunomodulatory binding factor 1 protein-coding 210-12 chr17 64214414 64214702 + 1.5 NA intron (NM_018469, intron 1 of 11) intron (NM_018469, intron 1 of 11) 16176 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 192.5-55 chr8 109225569 109225843 + 1.5 NA Intergenic Intergenic 104227 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 177-9 chr10 81439950 81440206 + 1.5 NA Intergenic L1MC4a|LINE|L1 -435116 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 269.167-7 chr2 23797176 23797406 + 1.5 NA intron (NR_125717, intron 20 of 28) intron (NR_125717, intron 20 of 28) 129832 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 234.167-17 chr7 51755775 51756116 + 1.5 NA Intergenic Intergenic -362689 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 476.833-2 chr20 50469820 50470422 + 1.5 NA Intergenic L2a|LINE|L2 -40200 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 521.833 chr6 56672441 56673685 + 1.5 NA intron (NM_001144770, intron 6 of 94) AluJb|SINE|Alu -30174 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 194.5-38 chr5 176314307 176314539 + 1.5 NA intron (NM_001308200, intron 2 of 6) intron (NM_001308200, intron 2 of 6) 1278 NM_001308200 375484 Hs.719847 NM_198567 ENSG00000170085 SIMC1 C5orf25|OOMA1|PLEIAD SUMO interacting motifs containing 1 protein-coding 219.666-4 chr17 81286660 81287123 + 1.5 NA intron (NM_001037984, intron 2 of 15) intron (NM_001037984, intron 2 of 15) 8416 NM_001037984 124565 Hs.352240 NM_138570 ENSG00000157637 SLC38A10 PP1744 solute carrier family 38 member 10 protein-coding 236.5-16 chr2 86559499 86559801 + 1.5 NA intron (NM_001198954, intron 3 of 7) intron (NM_001198954, intron 3 of 7) 3793 NM_016079 51652 Hs.591582 NM_016079 ENSG00000115561 CHMP3 CGI-149|NEDF|VPS24 charged multivesicular body protein 3 protein-coding 126.667-20 chr14 67685938 67686073 + 1.5 NA intron (NM_001252650, intron 4 of 5) L2a|LINE|L2 9759 NM_016026 51109 Hs.719925 NM_016026 ENSG00000072042 RDH11 ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|RDJCSS|SCALD|SDR7C1 retinol dehydrogenase 11 protein-coding 515-2 chr6 139994650 139995112 + 1.5 NA intron (NR_121623, intron 1 of 1) intron (NR_121623, intron 1 of 1) -3620 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 198-33 chr2 181425853 181426090 + 1.5 NA Intergenic MER50|LTR|ERV1 -30921 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 263.5-3 chr1 153882852 153883033 + 1.5 NA intron (NM_020699, intron 1 of 10) intron (NM_020699, intron 1 of 10) 40030 NM_020699 57459 Hs.4779 NM_020699 ENSG00000143614 GATAD2B MRD18|P66beta|p68 GATA zinc finger domain containing 2B protein-coding 388.5 chr11 112021801 112022337 + 1.5 NA 3' UTR (NM_033425, exon 16 of 16) 3' UTR (NM_033425, exon 16 of 16) -2745 NM_001931 1737 Hs.335551 NM_001931 ENSG00000150768 DLAT DLTA|E2|PDC-E2|PDCE2 dihydrolipoamide S-acetyltransferase protein-coding 168.167-28 chr18 62162738 62162936 + 1.5 NA intron (NM_176787, intron 2 of 30) intron (NM_176787, intron 2 of 30) 24219 NM_176787 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 269.5-7 chr14 67956760 67957086 + 1.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 133331 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 197.5-48 chr7 37827364 37827533 + 1.5 NA Intergenic Charlie7|DNA|hAT-Charlie -21149 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 326.666-4 chr5 132705019 132705460 + 1.5 NA intron (NM_007054, intron 9 of 16) intron (NM_007054, intron 9 of 16) -22610 NR_134248 105379176 Hs.73917 NR_134248 LOC105379176 - uncharacterized LOC105379176 ncRNA 260.167-9 chr17 53695116 53695408 + 1.5 NA Intergenic Intergenic -127665 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 237.333-32 chr5 106867325 106867488 + 1.5 NA intron (NR_104671, intron 2 of 3) intron (NR_104671, intron 2 of 3) 143608 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 233-10 chr15 33005479 33005646 + 1.5 NA intron (NM_001277313, intron 7 of 20) MIR|SINE|MIR 62612 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 153.667-9 chr10 67053043 67053276 + 1.5 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 40893 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 259-2 chr10 73253474 73253717 + 1.5 NA promoter-TSS (NM_016065) promoter-TSS (NM_016065) 854 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 264.833 chr1 94883245 94883565 + 1.5 NA intron (NM_001258340, intron 12 of 14) AluJb|SINE|Alu 42403 NM_001286056 1266 Hs.483454 NM_001839 ENSG00000117519 CNN3 - calponin 3 protein-coding 226.5-35 chr8 114010425 114010714 + 1.5 NA Intergenic Intergenic -573630 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 318.833-5 chr10 107837790 107838152 + 1.5 NA Intergenic L1MD3|LINE|L1 231322 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 139.334-10 chr8 85452479 85452684 + 1.5 NA intron (NR_121630, intron 2 of 2) intron (NR_121630, intron 2 of 2) 10473 NR_121633 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 284-2 chr14 47171104 47171371 + 1.5 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 172009 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 150.5-33 chr17 12693716 12693880 + 1.5 NA intron (NR_104605, intron 2 of 2) L1M6B|LINE|L1 12337 NR_104605 101928418 Hs.620346 NR_104605 ENSG00000227274 LOC101928418 - uncharacterized LOC101928418 ncRNA 307.833-7 chr20 16454801 16455067 + 1.5 NA intron (NM_001199866, intron 12 of 22) L1MC5a|LINE|L1 118514 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 380.167-3 chr12 32834223 32834684 + 1.5 NA intron (NM_001005242, intron 6 of 12) intron (NM_001005242, intron 6 of 12) 62393 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 224.166-2 chr10 9111081 9111409 + 1.5 NA Intergenic Intergenic -164368 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 173.167-26 chr3 143224328 143224546 + 1.5 NA Intergenic Kanga1a|DNA|TcMar-Tc2 104666 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 133-9 chr1 238315579 238315708 + 1.5 NA Intergenic Intergenic 170374 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 280-21 chr9 70290387 70290621 + 1.5 NA intron (NM_015110, intron 8 of 24) L1M4|LINE|L1 31526 NM_015110 23137 Hs.534189 NM_015110 ENSG00000198887 SMC5 SMC5L1 structural maintenance of chromosomes 5 protein-coding 394.5 chr10 74199735 74200012 + 1.5 NA intron (NM_001369124, intron 1 of 9) AluSc|SINE|Alu 23110 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 412-2 chr20 3379292 3379696 + 1.5 NA intron (NM_001009984, intron 3 of 36) AluSx1|SINE|Alu 28168 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 377.333-3 chr16 17530392 17530721 + 1.5 NA Intergenic MLT1N2|LTR|ERVL-MaLR -59596 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 382-5 chr8 119146030 119146499 + 1.5 NA Intergenic Intergenic -62099 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 166.667-28 chr20 12527581 12527815 + 1.5 NA Intergenic Intergenic 409265 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 177.5-47 chr21 24134356 24134530 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 186934 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 208.667-33 chr5 40020321 40020548 + 1.5 NA Intergenic L1M5|LINE|L1 -31857 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 279-8 chr18 430629 430994 + 1.5 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 69890 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 208.667-42 chr8 91238409 91238601 + 1.5 NA intron (NM_001282357, intron 2 of 18) intron (NM_001282357, intron 2 of 18) -10814 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 425.333 chr1 109560866 109561596 + 1.5 NA intron (NM_006496, intron 1 of 8) intron (NM_006496, intron 1 of 8) 12616 NM_006496 2773 Hs.73799 NM_006496 ENSG00000065135 GNAI3 87U6|ARCND1 G protein subunit alpha i3 protein-coding 280.667-11 chr2 39794938 39795170 + 1.5 NA Intergenic Intergenic -15778 NM_001321475 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 272.167-5 chr11 33103582 33103823 + 1.5 NA intron (NM_001326, intron 8 of 20) AluSz|SINE|Alu 27552 NR_015451 283267 Hs.533701 NR_015451 ENSG00000280798 LINC00294 NCRNA00294 long intergenic non-protein coding RNA 294 ncRNA 430.5 chr17 58872402 58872844 + 1.5 NA intron (NM_014906, intron 1 of 6) MER89|LTR|ERV1 116754 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 193.5-19 chr18 49038323 49038486 + 1.5 NA intron (NR_148999, intron 3 of 4) L1ME3B|LINE|L1 11364 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 233.5-18 chr5 21071740 21071944 + 1.5 NA Intergenic L1ME1|LINE|L1 -387638 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 159.5-21 chr17 60477628 60477740 + 1.5 NA intron (NM_006380, intron 4 of 12) intron (NM_006380, intron 4 of 12) 48556 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 237-19 chr7 70136033 70136255 + 1.5 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 537669 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 186.5-20 chr12 12759471 12759612 + 1.5 NA intron (NM_001130415, intron 1 of 1) intron (NM_001130415, intron 1 of 1) -5108 NR_030344 693198 NR_030344 ENSG00000207983 MIR613 MIRN613|hsa-mir-613 microRNA 613 ncRNA 288-11 chr3 144952106 144952328 + 1.5 NA Intergenic Intergenic 979136 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 203-11 chr14 43950564 43950775 + 1.5 NA Intergenic Intergenic 556614 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 185.333-50 chr5 136187940 136188085 + 1.5 NA Intergenic L2b|LINE|L2 5150 NM_001350994 389332 Hs.127680 NM_001350994 ENSG00000271824 SMIM32 - small integral membrane protein 32 protein-coding 123-31 chr16 80659103 80659220 + 1.5 NA intron (NM_152342, intron 2 of 6) intron (NM_152342, intron 2 of 6) -86353 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 275.5-2 chr14 73307949 73308261 + 1.5 NA intron (NM_001005745, intron 5 of 10) L2a|LINE|L2 -62104 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 350 chr1 169934469 169934767 + 1.5 NA intron (NM_014970, intron 19 of 19) intron (NM_014970, intron 19 of 19) -40659 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 240.666 chr1 118508474 118508676 + 1.5 NA Intergenic Intergenic -323347 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 153.5-21 chr14 71476017 71476141 + 1.5 NA intron (NM_001284247, intron 1 of 23) intron (NM_001284247, intron 1 of 23) -11782 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 229.833-10 chr2 136068796 136069054 + 1.5 NA Intergenic Intergenic 47310 NM_001008540 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 248.834-10 chr4 124886078 124886348 + 1.5 NA Intergenic Intergenic -173481 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 498 chr18 3250961 3251627 + 1.5 NA promoter-TSS (NM_001303049) promoter-TSS (NM_001303049) -919 NM_001303049 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 389.666-2 chr4 35809454 35809888 + 1.5 NA Intergenic Intergenic 434268 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 290.667-2 chr10 82119971 82120230 + 1.5 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 112820 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 246.5-2 chr1 73735379 73735575 + 1.5 NA intron (NR_146300, intron 3 of 3) MIRc|SINE|MIR 60798 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 326.667-5 chr6 50159310 50159703 + 1.5 NA Intergenic Eulor6B|DNA?|DNA? -109577 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 185.167-5 chr11 23729170 23729379 + 1.5 NA Intergenic Intergenic -310084 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 216.5-23 chr3 74587439 74587702 + 1.5 NA Intergenic Intergenic -66430 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 126.5-73 chr5 44853633 44853758 + 1.5 NA Intergenic Intergenic 44748 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 367.833 chr12 8877577 8877885 + 1.5 NA TTS (NM_144670) TTS (NM_144670) 32727 NM_001282424 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 416.5 chr5 35341261 35341811 + 1.5 NA Intergenic Intergenic -111049 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 241-3 chr1 76976358 76976559 + 1.5 NA intron (NM_001320274, intron 2 of 2) L1M5|LINE|L1 -83685 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 240.5-18 chr5 167670280 167670474 + 1.5 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) -84552 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 226.667-28 chr6 45140579 45140785 + 1.5 NA intron (NM_001350325, intron 2 of 10) L1PB2|LINE|L1 57088 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 150.5-14 chr11 66436719 66436827 + 1.5 NA intron (NM_016050, intron 4 of 4) intron (NM_016050, intron 4 of 4) 2075 NR_120589 65003 Hs.418450 NM_016050 ENSG00000174547 MRPL11 CGI-113|L11MT|MRP-L11 mitochondrial ribosomal protein L11 protein-coding 266.333-18 chr7 88200026 88200348 + 1.5 NA 3' UTR (NM_021722, exon 31 of 31) 3' UTR (NM_021722, exon 31 of 31) -16473 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 143.5-68 chr6 35248317 35248455 + 1.5 NA intron (NM_001303136, intron 21 of 21) L2a|LINE|L2 -11349 NM_001292032 7629 Hs.388024 NM_003427 ENSG00000065029 ZNF76 D6S229E|ZNF523|Zfp523 zinc finger protein 76 protein-coding 167.5-64 chr8 125279315 125279480 + 1.5 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -150961 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 164-70 chr7 81726626 81726814 + 1.5 NA intron (NM_001010932, intron 8 of 17) intron (NM_001010932, intron 8 of 17) -35314 NR_126025 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 226.5-20 chr2 187443315 187443589 + 1.5 NA intron (NM_001369435, intron 1 of 15) intron (NM_001369435, intron 1 of 15) 4800 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 114-99 chr8 92553797 92553928 + 1.5 NA Intergenic Intergenic 101632 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 181.667-31 chr2 232164785 232164979 + 1.5 NA intron (NR_046477, intron 8 of 18) MIR3|SINE|MIR -7771 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 218.5-26 chr5 82817484 82817732 + 1.5 NA Intergenic AluSx|SINE|Alu -22547 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 312.833-7 chr6 149784051 149784332 + 1.5 NA intron (NM_001252050, intron 3 of 6) intron (NM_001252050, intron 3 of 6) 34450 NM_001360456 5110 Hs.279257 NM_005389 ENSG00000120265 PCMT1 PIMT protein-L-isoaspartate (D-aspartate) O-methyltransferase protein-coding 204.333-9 chr10 100971168 100971537 + 1.5 NA Intergenic Intergenic -1177 NM_001203244 57715 Hs.591923 NM_017893 ENSG00000095539 SEMA4G - semaphorin 4G protein-coding 350-4 chr18 8653729 8654126 + 1.5 NA Intergenic Intergenic 44482 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 289.667-4 chr2 159158794 159159059 + 1.5 NA intron (NM_001350063, intron 6 of 24) intron (NM_001350063, intron 6 of 24) -27909 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 131.5-32 chr18 58710249 58710345 + 1.5 NA intron (NM_173844, intron 6 of 15) intron (NM_173844, intron 6 of 15) -38424 NM_001289967 101927322 Hs.644875 NM_001289967 LOC101927322 - uncharacterized LOC101927322 protein-coding 355-3 chr11 88332213 88332656 + 1.5 NA intron (NM_148170, intron 2 of 3) intron (NM_148170, intron 2 of 3) 5302 NM_001814 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 347.5-2 chr5 170296887 170297126 + 1.5 NA intron (NM_005565, intron 1 of 20) intron (NM_005565, intron 1 of 20) 771 NM_005565 3937 Hs.304475 NM_005565 ENSG00000043462 LCP2 SLP-76|SLP76 lymphocyte cytosolic protein 2 protein-coding 226.5-10 chr11 32973310 32973702 + 1.5 NA exon (NM_001076786, exon 11 of 13) exon (NM_001076786, exon 11 of 13) -42372 NM_001077242 91614 Hs.280990 NM_139160 ENSG00000121690 DEPDC7 TR2|dJ85M6.4 DEP domain containing 7 protein-coding 335.5-2 chr20 14307419 14307862 + 1.5 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 29972 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 283.167-3 chr13 39405204 39405506 + 1.5 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 197838 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 146.667-100 chrX 66108517 66108681 + 1.5 NA Intergenic Intergenic -54072 NM_138737 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 253.333-20 chr7 119660667 119660979 + 1.5 NA intron (NR_131960, intron 4 of 4) intron (NR_131960, intron 4 of 4) 246552 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 204.833-28 chr6 64603401 64603599 + 1.5 NA intron (NM_001292009, intron 24 of 43) intron (NM_001292009, intron 24 of 43) -697918 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 341-4 chr4 130940220 130940657 + 1.5 NA Intergenic L1MC3|LINE|L1 564077 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 196.5-29 chr5 129310548 129310702 + 1.5 NA Intergenic Intergenic 86522 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 275.167-10 chr4 38137825 38138199 + 1.5 NA 3' UTR (NM_001253915, exon 4 of 4) 3' UTR (NM_001253915, exon 4 of 4) 18058 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 271-14 chr7 37984605 37984914 + 1.5 NA Intergenic Intergenic 63440 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 136.833-64 chr6 78999625 78999949 + 1.5 NA intron (NM_017934, intron 17 of 39) intron (NM_017934, intron 17 of 39) 78467 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 239.333-26 chr9 30716085 30716371 + 1.5 NA Intergenic L1MEg|LINE|L1 -307774 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 331.333 chr10 22331974 22332477 + 1.5 NA TTS (NM_005180) TTS (NM_005180) 11126 NM_005180 648 Hs.380403 NM_005180 ENSG00000168283 BMI1 FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1 BMI1 proto-oncogene, polycomb ring finger protein-coding 265.5-8 chr2 190951912 190952334 + 1.5 NA intron (NM_014905, intron 14 of 17) intron (NM_014905, intron 14 of 17) 62127 NM_139266 6772 Hs.642990 NM_007315 ENSG00000115415 STAT1 CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91 signal transducer and activator of transcription 1 protein-coding 251.5-3 chr10 58046659 58046839 + 1.5 NA Intergenic Intergenic 221145 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 327.333 chr1 228961946 228962546 + 1.5 NA Intergenic L1MB4|LINE|L1 212555 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 545.666 chr22 43750610 43751576 + 1.5 NA intron (NM_198856, intron 4 of 29) intron (NM_198856, intron 4 of 29) 61212 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 130.333-67 chr4 61477676 61477827 + 1.5 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 275579 NM_001371342 326.5-5 chr15 69430185 69430569 + 1.5 NA intron (NM_138555, intron 10 of 22) L2a|LINE|L2 -15348 NR_132969 145694 Hs.147229 NR_132969 ENSG00000259426 LOC145694 - uncharacterized LOC145694 ncRNA 165.5-9 chr11 19046638 19046751 + 1.5 NA Intergenic L1MA7|LINE|L1 13323 NM_001303615 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 251.334-8 chr9 28125269 28125458 + 1.5 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -551497 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 279.167-8 chr2 109010741 109010995 + 1.5 NA Intergenic MLT2F|LTR|ERVL -21648 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 169.5-51 chr4 117569644 117569847 + 1.5 NA intron (NR_125757, intron 2 of 3) ERVL-E-int|LTR|ERVL 141347 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 228.334 chr11 34231612 34231792 + 1.5 NA intron (NM_145804, intron 1 of 16) AluSc8|SINE|Alu 126073 NM_001144030 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|Kre33|NET43 N-acetyltransferase 10 protein-coding 366.334 chr2 221621655 221622082 + 1.5 NA Intergenic L1MA9|LINE|L1 -47666 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 334.001 chr4 110440951 110441379 + 1.5 NA Intergenic Intergenic -34990 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 535.166-2 chr4 174427932 174428374 + 1.5 NA Intergenic Intergenic 4358 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 382.5-3 chr4 20358182 20358740 + 1.5 NA intron (NM_001289135, intron 4 of 35) intron (NM_001289135, intron 4 of 35) -33728 NR_037876 100505893 Hs.665305 NR_037876 ENSG00000248228 SLIT2-IT1 - SLIT2 intronic transcript 1 ncRNA 216.833-13 chr2 43500512 43500886 + 1.5 NA intron (NM_001083953, intron 24 of 37) L1ME3C|LINE|L1 95275 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 143-82 chr8 132113387 132113605 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -8231 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 274.5-17 chr7 54913262 54913553 + 1.5 NA Intergenic L1M5|LINE|L1 -105610 NM_001346897 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 410-2 chr5 63164441 63164767 + 1.5 NA Intergenic MIRb|SINE|MIR 585785 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 278.167-5 chr2 136403691 136404019 + 1.5 NA Intergenic Intergenic -285700 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 201-2 chr1 41622354 41622555 + 1.5 NA intron (NM_024503, intron 3 of 8) intron (NM_024503, intron 3 of 8) -137771 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 248.333-11 chr7 44527621 44527910 + 1.5 NA intron (NM_013389, intron 10 of 19) L1M4c|LINE|L1 13565 NM_001300967 29881 Hs.567486 NM_013389 ENSG00000015520 NPC1L1 LDLCQ7|NPC11L1|SLC65A2 NPC1 like intracellular cholesterol transporter 1 protein-coding 217.333-34 chr6 120328209 120328475 + 1.5 NA Intergenic L1ME1|LINE|L1 313163 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 238.667-22 chr3 127940004 127940390 + 1.5 NA intron (NM_001370224, intron 4 of 6) L1MD2|LINE|L1 24965 NM_001370224 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 315.833-2 chr2 25560786 25561179 + 1.5 NA intron (NM_001320937, intron 8 of 8) L2|LINE|L2 89240 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 256.5-2 chr1 213886058 213886319 + 1.5 NA intron (NR_037850, intron 4 of 5) MLT1D|LTR|ERVL-MaLR -38561 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 261.834-5 chr8 129854479 129854778 + 1.5 NA intron (NM_001353307, intron 8 of 13) intron (NM_001353307, intron 8 of 13) -68004 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 268-7 chr18 61496880 61497070 + 1.5 NA intron (NM_031891, intron 2 of 11) intron (NM_031891, intron 2 of 11) 163545 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 252.167-6 chr14 59154241 59154594 + 1.5 NA Intergenic Intergenic -34250 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 379.833-4 chr14 83778164 83778503 + 1.5 NA Intergenic Intergenic 1135701 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 446.001-2 chr3 133850851 133851188 + 1.5 NA intron (NM_001363953, intron 3 of 8) L1MEf|LINE|L1 44828 NM_001363953 51560 Hs.715344 NM_016577 ENSG00000154917 RAB6B - RAB6B, member RAS oncogene family protein-coding 379.5 chr2 193133874 193134186 + 1.5 NA Intergenic L1MCa|LINE|L1 384185 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 203.5-43 chr8 102274974 102275163 + 1.5 NA intron (NM_001282873, intron 47 of 58) L1MC5|LINE|L1 35617 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 219.333-27 chr4 30477346 30477579 + 1.5 NA Intergenic MER97a|DNA|hAT-Tip100 -242907 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 204-11 chr17 25920028 25920317 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 1169069 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 178.667-70 chr8 105458552 105458712 + 1.5 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 139089 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 259.5-2 chr10 131406447 131406624 + 1.5 NA Intergenic Intergenic -94814 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 292.5-14 chr4 151638960 151639229 + 1.5 NA intron (NM_001109977, intron 9 of 13) intron (NM_001109977, intron 9 of 13) 121913 NM_004564 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 177.5-59 chr4 135790483 135790628 + 1.5 NA Intergenic Intergenic 97538 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 152.5-38 chr3 97695900 97696054 + 1.5 NA intron (NM_001080448, intron 14 of 17) L2b|LINE|L2 -68544 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 252.333-4 chr1 219014137 219014510 + 1.5 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) -95812 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 253.5-19 chr3 89628102 89628434 + 1.5 NA Intergenic Intergenic 520647 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 347-6 chr3 86166918 86167232 + 1.5 NA Intergenic Intergenic -314868 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 179.5-22 chr3 95136310 95136526 + 1.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR 198155 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 200.167-42 chr6 162698682 162699012 + 1.5 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -28285 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 499.833 chr14 73884267 73885101 + 1.5 NA non-coding (NR_163921, exon 10 of 10) non-coding (NR_163921, exon 10 of 10) -2175 NR_040251 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 216.166-2 chr14 61751952 61752103 + 1.5 NA promoter-TSS (NR_144368) promoter-TSS (NR_144368) -930 NR_144368 105370526 Hs.661638 NR_144368 ENSG00000258667 HIF1A-AS3 - HIF1A antisense RNA 3 ncRNA 127.5-71 chr8 130993775 130993905 + 1.5 NA intron (NM_001115, intron 1 of 17) L1ME4a|LINE|L1 47069 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 278.334-5 chr9 72195813 72196242 + 1.5 NA intron (NM_001351573, intron 2 of 14) L2c|LINE|L2 46587 NM_001242506 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 334.667-2 chr10 74016130 74016406 + 1.5 NA intron (NM_014000, intron 1 of 21) intron (NM_014000, intron 1 of 21) 18152 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 223.333-5 chr10 72478311 72478506 + 1.5 NA intron (NM_001195519, intron 1 of 6) intron (NM_001195519, intron 1 of 6) 45578 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 256.001-3 chr8 88698601 88698839 + 1.5 NA Intergenic Intergenic -371237 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 230.333-40 chr9 27522746 27523149 + 1.5 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -1367 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 226-24 chr5 162172603 162172792 + 1.5 NA Intergenic Intergenic 105055 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 207.5-35 chr9 110443838 110444092 + 1.5 NA intron (NM_153366, intron 26 of 47) intron (NM_153366, intron 26 of 47) -106081 NM_001286947 255220 Hs.147064 NM_001003936 ENSG00000204193 TXNDC8 SPTRX-3|SPTRX3|TRX6|bA427L11.2 thioredoxin domain containing 8 protein-coding 196.5-4 chr1 221239456 221239657 + 1.5 NA Intergenic Intergenic 96740 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 431-2 chr19 28774385 28774765 + 1.5 NA Intergenic L1PREC2|LINE|L1 -46881 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 275-14 chr7 106913209 106913558 + 1.5 NA Intergenic Tigger19a|DNA|TcMar-Tigger 47904 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 263.833-9 chr3 164421766 164421950 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 -250302 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 274.5-6 chr18 42676059 42676304 + 1.5 NA intron (NR_046174, intron 7 of 9) intron (NR_046174, intron 7 of 9) 439504 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 273.167-10 chr17 2882811 2883112 + 1.5 NA intron (NM_001330058, intron 2 of 24) intron (NM_001330058, intron 2 of 24) 82934 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 327.333-14 chr6 147912875 147913282 + 1.5 NA Intergenic L1MC4a|LINE|L1 -359250 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 165.333-4 chr1 219499295 219499481 + 1.5 NA intron (NR_135822, intron 1 of 3) intron (NR_135822, intron 1 of 3) 57936 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 190.834-3 chr15 46222062 46222248 + 1.5 NA Intergenic Intergenic 516960 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 312 chr1 208054870 208055245 + 1.5 NA intron (NM_025179, intron 13 of 31) intron (NM_025179, intron 13 of 31) -143932 NM_001025109 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 160.833-11 chr10 103191829 103191976 + 1.5 NA intron (NM_001351187, intron 1 of 21) intron (NM_001351187, intron 1 of 21) 1404 NM_001351185 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 224.667-5 chr10 58728625 58729100 + 1.5 NA intron (NM_001080512, intron 3 of 20) Tigger1|DNA|TcMar-Tigger 13847 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 225.833-10 chr21 21809138 21809334 + 1.5 NA Intergenic Intergenic 62251 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 316.667-7 chr2 14730347 14730638 + 1.5 NA Intergenic Intergenic 97775 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 208.5-35 chr4 91039802 91040010 + 1.5 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 804875 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 162-72 chr8 113177137 113177257 + 1.5 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 199955 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 434 chr11 39044738 39045139 + 1.5 NA Intergenic Intergenic 396080 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 455.501 chr4 74355237 74355890 + 1.5 NA Intergenic AluSp|SINE|Alu -9582 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 301.834 chr1 223690966 223691345 + 1.5 NA Intergenic Intergenic -10438 NM_001146068 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 411.666-3 chrX 20309373 20309925 + 1.5 NA Intergenic MIR3|SINE|MIR -42740 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 244.667-6 chr13 82683386 82683580 + 1.5 NA Intergenic L1PB1|LINE|L1 1198910 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 219.333-20 chr2 47846725 47847027 + 1.5 NA intron (NM_001190274, intron 1 of 22) MER33|DNA|hAT-Charlie 41843 NM_025133 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 127.334-4 chr6 94113729 94113923 + 1.5 NA Intergenic (CTTTAC)n|Simple_repeat|Simple_repeat 395523 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 137.333-87 chr6 94767904 94767995 + 1.5 NA Intergenic Intergenic 809502 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 155.333-65 chr3 68024006 68024155 + 1.5 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 19833 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 195.5-35 chr6 96095518 96095678 + 1.5 NA intron (NM_006581, intron 1 of 2) L2a|LINE|L2 79624 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 273.5-5 chr12 17467318 17467688 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 121575 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 217.333-24 chr4 32747662 32747898 + 1.5 NA Intergenic Intergenic 396742 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 178.5-77 chr9 20901368 20901550 + 1.5 NA intron (NM_017794, intron 23 of 45) intron (NM_017794, intron 23 of 45) 114532 NR_145762 109616992 NR_145762 ENSG00000202189 SNORA30B - small nucleolar RNA, H/ACA box 30B snoRNA 319.334 chr14 62052274 62052568 + 1.5 NA intron (NM_001367661, intron 4 of 8) intron (NM_001367661, intron 4 of 8) -64936 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 163.833-60 chr8 136541446 136541565 + 1.5 NA intron (NR_147196, intron 2 of 5) L1PB1|LINE|L1 10707 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 219.333-32 chr5 39490383 39490770 + 1.5 NA Intergenic L1ME3G|LINE|L1 -29855 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 337.667-4 chr5 117548647 117549040 + 1.5 NA intron (NR_046089, intron 4 of 5) L1M5|LINE|L1 133331 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 251.5 chr1 228779154 228779451 + 1.5 NA Intergenic Intergenic 43823 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 284.167-7 chr16 78891091 78891470 + 1.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 709457 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 173.167-31 chr4 108773908 108774055 + 1.5 NA Intergenic Intergenic -10928 NM_001331033 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 245.667-8 chr14 48709696 48710016 + 1.5 NA Intergenic Intergenic 876524 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 279.833-7 chr7 28216382 28217075 + 1.5 NA intron (NR_034097, intron 2 of 3) intron (NR_034097, intron 2 of 3) -35933 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 177.667-6 chr10 36360206 36360391 + 1.5 NA Intergenic Intergenic 581996 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 197.166-2 chr3 6068469 6068803 + 1.5 NA Intergenic Intergenic 736813 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 194.167-17 chr21 27254001 27254333 + 1.5 NA Intergenic L1ME3E|LINE|L1 -287079 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 145.5-49 chr3 99170170 99170424 + 1.5 NA Intergenic L1PA15|LINE|L1 -268602 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 289.5-10 chr4 71415426 71415632 + 1.5 NA intron (NM_003759, intron 4 of 22) intron (NM_003759, intron 4 of 22) 76476 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 215.167-3 chr1 227300376 227300528 + 1.5 NA intron (NM_001366019, intron 1 of 36) L1PB3|LINE|L1 18040 NM_001366010 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 258.833-13 chr4 65069917 65070308 + 1.5 NA Intergenic Intergenic -65612 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 320.666-2 chr14 74938194 74938668 + 1.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR -15171 NM_001370255 83694 Hs.414481 NM_031464 ENSG00000198208 RPS6KL1 RSKL2 ribosomal protein S6 kinase like 1 protein-coding 160.833-9 chr10 89726850 89727010 + 1.5 NA intron (NM_016195, intron 16 of 32) AluJo|SINE|Alu 25340 NM_001284259 9585 Hs.240 NM_016195 ENSG00000138182 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 352.5-5 chr7 48318311 48318715 + 1.5 NA intron (NM_152701, intron 27 of 61) AluJo|SINE|Alu 147055 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 275.833-2 chr14 19879555 19879946 + 1.5 NA Intergenic Intergenic 3482 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 219.834-8 chr8 53489892 53490147 + 1.5 NA Intergenic Intergenic 33946 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 220-24 chr7 38407168 38407424 + 1.5 NA intron (NM_139316, intron 16 of 19) (AG)n|Simple_repeat|Simple_repeat 65719 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 229.333 chr1 45207400 45207711 + 1.5 NA promoter-TSS (NM_020883) promoter-TSS (NM_020883) -950 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 114.167-43 chr2 18680962 18681265 + 1.5 NA Intergenic Intergenic -91533 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 182.5-26 chr21 42432846 42433062 + 1.5 NA intron (NM_018961, intron 9 of 14) L1M7|LINE|L1 29052 NM_001001895 53347 Hs.473912 NM_018961 ENSG00000160185 UBASH3A CLIP4|STS-2|TULA|TULA-1 ubiquitin associated and SH3 domain containing A protein-coding 255.333-3 chr10 21614695 21615000 + 1.5 NA non-coding (NR_136736, exon 8 of 26) non-coding (NR_136736, exon 8 of 26) 80675 NM_001195628 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 236.5-24 chr4 128247570 128247835 + 1.5 NA Intergenic MER4-int|LTR|ERV1 40111 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 312.167-6 chr4 64414623 64414985 + 1.5 NA Intergenic Ricksha_c|DNA|MULE-MuDR -5344 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 253.5-9 chr12 31698059 31698313 + 1.5 NA intron (NM_001113402, intron 3 of 6) MARNA|DNA|TcMar-Mariner 30835 NM_001113402 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 328.333-5 chr8 120781851 120782125 + 1.5 NA intron (NM_021021, intron 1 of 6) MLT1C|LTR|ERVL-MaLR 20735 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 186.333-58 chr9 30007911 30008129 + 1.5 NA Intergenic Intergenic 400434 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 407.167-5 chr5 36092432 36092871 + 1.5 NA Intergenic LTR50|LTR|ERVL -25769 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 225-14 chr14 62789265 62789775 + 1.5 NA intron (NM_139318, intron 9 of 10) L1MA9|LINE|L1 255938 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 308.5-4 chr14 46084066 46084476 + 1.5 NA intron (NR_102702, intron 1 of 3) L1ME2|LINE|L1 20112 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 263.333-12 chr15 95882408 95882708 + 1.5 NA Intergenic Intergenic 245283 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 178-54 chr7 15590626 15590795 + 1.5 NA Intergenic L1MC1|LINE|L1 -28695 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 273.667-7 chr14 88778659 88778841 + 1.5 NA intron (NM_183387, intron 1 of 42) AluSc|SINE|Alu 14203 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 439.333 chr2 24219351 24219887 + 1.5 NA TTS (NM_147152) TTS (NM_147152) 44566 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 236.333-3 chr10 78588531 78588721 + 1.5 NA Intergenic L2c|LINE|L2 321284 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 349.167-6 chr8 133946905 133947431 + 1.5 NA Intergenic Intergenic 60672 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 204.334-5 chr6 69862607 69862803 + 1.5 NA Intergenic L2c|LINE|L2 -3851 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 354.334-2 chr8 63857504 63857972 + 1.5 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 88308 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 361-2 chr14 50502127 50502676 + 1.5 NA intron (NM_198794, intron 3 of 31) intron (NM_198794, intron 3 of 31) 30168 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 365.334-2 chr8 109464125 109464634 + 1.5 NA exon (NM_177531, exon 49 of 78) exon (NM_177531, exon 49 of 78) -75321 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 251.167-17 chrX 83361406 83361639 + 1.5 NA Intergenic Intergenic -146768 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 264-13 chr4 33233332 33233563 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 806446 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 260-3 chr1 190500834 190501054 + 1.5 NA Intergenic Intergenic 22393 NR_110717 101929120 Hs.602301 NR_110716 LINC01351 - long intergenic non-protein coding RNA 1351 ncRNA 261.5-17 chr5 150881357 150881698 + 1.5 NA intron (NM_001346557, intron 3 of 3) L1M1|LINE|L1 23456 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 132.166 chr1 66498687 66498861 + 1.5 NA Intergenic LTR104_Mam|LTR|Gypsy -34819 NM_001308203 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 180.667-60 chr5 173960721 173961142 + 1.5 NA TTS (NM_001308193) TTS (NM_001308193) -28239 NM_001144954 133491 Hs.131469 NM_001144954 ENSG00000185056 C5orf47 - chromosome 5 open reading frame 47 protein-coding 310 chr12 32819945 32820395 + 1.5 NA intron (NM_001005242, intron 9 of 12) intron (NM_001005242, intron 9 of 12) -64273 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 394.5-3 chr4 114365667 114365945 + 1.5 NA Intergenic Intergenic -232596 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 183.333-3 chr1 73467411 73467783 + 1.5 NA Intergenic L2c|LINE|L2 161427 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 332.667 chr18 3330103 3330554 + 1.5 NA Intergenic MIR|SINE|MIR 20231 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 548.5 chr8 54275345 54276069 + 1.5 NA Intergenic L1MC3|LINE|L1 -54979 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 333.667-6 chr8 123606865 123607237 + 1.5 NA Intergenic Intergenic 46750 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 356.333-6 chr9 82177672 82178063 + 1.5 NA Intergenic L1MCc|LINE|L1 189095 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 251.5-5 chr14 48729647 48729986 + 1.5 NA Intergenic Intergenic 856564 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 201.334-4 chr18 29864198 29864387 + 1.5 NA Intergenic Intergenic -434618 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 291.5-4 chr12 103871694 103872019 + 1.5 NA intron (NR_027249, intron 9 of 15) L1ME4a|LINE|L1 -30622 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 286.5-14 chr6 167462129 167462323 + 1.5 NA intron (NR_134591, intron 3 of 3) intron (NR_134591, intron 3 of 3) 10564 NR_134591 105378127 Hs.58456 NR_134591 LOC105378127 - uncharacterized LOC105378127 ncRNA 165.333-12 chr12 26929233 26929352 + 1.5 NA intron (NM_018164, intron 3 of 16) L1M4|LINE|L1 8689 NM_018164 55726 Hs.505077 NM_018164 ENSG00000064102 INTS13 ASUN|C12orf11|GCT1|Mat89Bb|NET48|SPATA30 integrator complex subunit 13 protein-coding 287.5-11 chr22 45739439 45739765 + 1.5 NA intron (NM_013236, intron 8 of 11) intron (NM_013236, intron 8 of 11) -20922 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 255-4 chr10 82796493 82796819 + 1.5 NA intron (NR_163252, intron 3 of 8) L1M8|LINE|L1 -563736 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 325.167-2 chr15 47461456 47461767 + 1.5 NA intron (NM_001198999, intron 2 of 19) intron (NM_001198999, intron 2 of 19) -255894 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 403.5-3 chr2 67638946 67639245 + 1.5 NA Intergenic MER58B|DNA|hAT-Charlie 186467 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 367.833-3 chr2 198142364 198142803 + 1.5 NA intron (NM_006226, intron 5 of 5) intron (NM_006226, intron 5 of 5) 232514 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 199.167-40 chr7 50239248 50239489 + 1.5 NA Intergenic Intergenic -64696 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 276.333-3 chr1 235859044 235859380 + 1.5 NA intron (NR_102436, intron 1 of 3) L2a|LINE|L2 -6152 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 153-40 chr4 76470754 76470930 + 1.5 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 35613 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 257-9 chr18 1494100 1494389 + 1.5 NA Intergenic L1PA17|LINE|L1 -134615 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 154.5-73 chr8 136981311 136981439 + 1.5 NA Intergenic Intergenic 432213 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 295.166 chr4 43428615 43429258 + 1.5 NA Intergenic Intergenic 63607 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 250.333-14 chr2 197111517 197112067 + 1.5 NA intron (NM_153697, intron 8 of 9) intron (NM_153697, intron 8 of 9) -86199 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 151.333-28 chr14 67525242 67525381 + 1.5 NA intron (NM_001348546, intron 1 of 2) L1ME4a|LINE|L1 -7979 NM_020715 57475 Hs.594236 NM_020715 ENSG00000054690 PLEKHH1 - pleckstrin homology, MyTH4 and FERM domain containing H1 protein-coding 205.167-21 chr18 25527976 25528195 + 1.5 NA Intergenic L1ME1|LINE|L1 -175919 NM_015461 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 319.999 chr5 7254075 7254537 + 1.5 NA Intergenic L1M4|LINE|L1 15048 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 355-2 chr10 57995721 57996090 + 1.5 NA Intergenic Intergenic 271989 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 210.5-43 chr6 43389647 43389902 + 1.5 NA Intergenic L1PB|LINE|L1 -20127 NM_014345 24149 Hs.509718 NM_014345 ENSG00000171467 ZNF318 HRIHFB2436|TZF|ZFP318 zinc finger protein 318 protein-coding 278-14 chr7 108624208 108624431 + 1.5 NA Intergenic Intergenic 54445 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 241-18 chr3 77776639 77776870 + 1.5 NA Intergenic Intergenic 272209 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 194.167-36 chr7 12978843 12979206 + 1.5 NA Intergenic Intergenic 291391 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 276.667-2 chr12 84426665 84426943 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 485995 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 168.833-27 chr2 230342687 230342882 + 1.5 NA intron (NM_001352892, intron 2 of 18) L1PA10|LINE|L1 15613 NM_001308162 93349 Hs.589661 NM_138402 ENSG00000185404 SP140L - SP140 nuclear body protein like protein-coding 326-7 chr5 29671442 29671720 + 1.5 NA Intergenic Intergenic -208979 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 298.5-6 chr12 119825579 119825915 + 1.5 NA intron (NM_007174, intron 7 of 46) intron (NM_007174, intron 7 of 46) 51573 NM_001206999 11113 Hs.119594 NM_007174 ENSG00000122966 CIT CITK|CRIK|MCPH17|STK21 citron rho-interacting serine/threonine kinase protein-coding 231.5 chr1 237552583 237553028 + 1.5 NA intron (NM_001035, intron 27 of 104) L1ME2|LINE|L1 81686 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 312.834-5 chr5 19888015 19888484 + 1.5 NA intron (NM_001349562, intron 2 of 13) L1ME3B|LINE|L1 -1977 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 212.833-19 chr5 34020238 34020427 + 1.5 NA non-coding (NR_146599, exon 12 of 12) non-coding (NR_146599, exon 12 of 12) -12282 NM_014324 23600 Hs.508343 NM_014324 ENSG00000242110 AMACR AMACRD|CBAS4|P504S|RACE|RM alpha-methylacyl-CoA racemase protein-coding 143.667-89 chr5 74594929 74595096 + 1.5 NA Intergenic Intergenic -45011 NM_001292004 3074 Hs.69293 NM_000521 ENSG00000049860 HEXB ENC-1AS|HEL-248|HEL-S-111 hexosaminidase subunit beta protein-coding 229-31 chr4 66372764 66373092 + 1.5 NA Intergenic Intergenic 96104 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 177.5-49 chr22 25640985 25641130 + 1.5 NA intron (NM_001362778, intron 2 of 19) intron (NM_001362778, intron 2 of 19) 76382 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 219.333-6 chr10 76249267 76249527 + 1.5 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 466636 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 269-14 chr7 54357257 54357532 + 1.5 NA Intergenic Intergenic 26697 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 341.5-3 chr3 70156125 70156496 + 1.5 NA Intergenic Intergenic 156328 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 163.5-35 chr2 187612004 187612222 + 1.5 NA Intergenic Intergenic -57608 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 340.5-2 chr10 115057694 115058052 + 1.5 NA Intergenic Intergenic -35492 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 245.833-3 chr12 25877104 25877496 + 1.5 NA Intergenic Intergenic -3221 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 294.999-2 chr22 32400571 32401014 + 1.5 NA intron (NM_014306, intron 5 of 11) intron (NM_014306, intron 5 of 11) 11455 NM_014306 51493 Hs.474643 NM_014306 ENSG00000100220 RTCB C22orf28|DJ149A16.6|FAAP|HSPC117 RNA 2',3'-cyclic phosphate and 5'-OH ligase protein-coding 242.5-9 chr2 192031220 192031518 + 1.5 NA intron (NM_001305134, intron 5 of 9) L2a|LINE|L2 163564 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 156-83 chr8 27621756 27622045 + 1.5 NA Intergenic L1M5|LINE|L1 -7200 NM_001831 1191 Hs.436657 NM_001831 ENSG00000120885 CLU AAG4|APO-J|APOJ|CLI|CLU1|CLU2|KUB1|NA1/NA2|SGP-2|SGP2|SP-40|TRPM-2|TRPM2 clusterin protein-coding 254-32 chr8 109919073 109919479 + 1.5 NA Intergenic Intergenic 56495 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 317.833 chr18 7958772 7959014 + 1.5 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 391577 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 197.5-42 chr4 112825294 112825509 + 1.5 NA intron (NM_001354275, intron 1 of 43) intron (NM_001354275, intron 1 of 43) 7404 NM_001354244 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 294.667-4 chr19 36605737 36606260 + 1.5 NA promoter-TSS (NR_027239) promoter-TSS (NR_027239) 685 NM_032825 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 395-5 chrX 100874590 100874983 + 1.5 NA promoter-TSS (NM_013955) promoter-TSS (NM_013955) -427 NM_007052 27035 Hs.592227 NM_007052 ENSG00000007952 NOX1 GP91-2|MOX1|NOH-1|NOH1 NADPH oxidase 1 protein-coding 313.667-2 chr1 92598492 92599099 + 1.5 NA intron (NM_001350198, intron 18 of 19) intron (NM_001350198, intron 18 of 19) -111870 NM_005263 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 342-3 chr14 48338090 48338434 + 1.5 NA Intergenic L1PA13|LINE|L1 -543248 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 402-4 chr5 65298559 65299266 + 1.5 NA intron (NR_135689, intron 10 of 25) intron (NR_135689, intron 10 of 25) 183008 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 273.5-15 chr21 14677559 14677960 + 1.5 NA Intergenic Intergenic -34652 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 176.666 chr14 58548898 58549079 + 1.5 NA TTS (NM_001244191) TTS (NM_001244191) -85080 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 354 chr22 31500988 31501389 + 1.5 NA intron (NM_001258326, intron 1 of 30) AluY|SINE|Alu 4652 NM_014775 9814 Hs.62209 NM_014775 ENSG00000198089 SFI1 PISD|PPP1R139|hSfi1p SFI1 centrin binding protein protein-coding 244.167-13 chr2 145714619 145714890 + 1.5 NA Intergenic MER106A|DNA|hAT-Charlie -872303 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 406-4 chr7 14291265 14291597 + 1.5 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -300006 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 161.833-44 chrX 77786639 77786818 + 1.5 NA promoter-TSS (NM_138270) promoter-TSS (NM_138270) -512 NM_000489 546 Hs.533526 NM_000489 ENSG00000085224 ATRX JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX ATRX chromatin remodeler protein-coding 214-4 chr10 61670268 61670504 + 1.5 NA intron (NM_173554, intron 1 of 6) intron (NM_173554, intron 1 of 6) 7425 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 343.833 chr1 27495771 27496041 + 1.5 NA Intergenic AluSx1|SINE|Alu -5739 NM_006990 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WASP family member 2 protein-coding 290.5-12 chr2 169203030 169203337 + 1.5 NA intron (NM_004525, intron 42 of 78) intron (NM_004525, intron 42 of 78) 122076 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 261-7 chr12 18056047 18056284 + 1.5 NA Intergenic Intergenic 34028 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 217-21 chr3 21506946 21507179 + 1.5 NA intron (NM_024697, intron 4 of 7) intron (NM_024697, intron 4 of 7) -35727 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 338.333-8 chr7 42539457 42539883 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 166777 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 341-3 chr2 212749768 212750166 + 1.5 NA Intergenic L1MC4|LINE|L1 -45364 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 284.167-15 chr5 165643391 165643763 + 1.5 NA Intergenic Intergenic 1173298 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 309-5 chr2 51438575 51438940 + 1.5 NA intron (NR_135237, intron 4 of 10) (AT)n|Simple_repeat|Simple_repeat 406156 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 230-32 chr9 27994135 27994387 + 1.5 NA intron (NM_001354574, intron 5 of 5) L1MA4|LINE|L1 -420395 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 322.667-7 chr8 118302336 118302700 + 1.5 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -190699 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 166-33 chr2 16620292 16620518 + 1.5 NA intron (NM_030797, intron 2 of 11) intron (NM_030797, intron 2 of 11) 45429 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 310-11 chr8 122675886 122676245 + 1.5 NA intron (NR_126348, intron 2 of 3) L1ME4b|LINE|L1 18041 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 206-2 chr10 92697384 92697581 + 1.5 NA Intergenic Intergenic 7527 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 328.667-7 chr2 122318908 122319343 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 563474 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 220.167-27 chr6 71606094 71606253 + 1.5 NA Intergenic L2c|LINE|L2 185146 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 308.5-7 chr2 189463543 189463843 + 1.5 NA intron (NM_001303096, intron 10 of 21) intron (NM_001303096, intron 10 of 21) 22219 NM_032168 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 458.333 chr12 249519 250277 + 1.5 NA intron (NM_016615, intron 2 of 14) L1ME2z|LINE|L1 7401 NR_120482 102723544 Hs.669733 NR_120482 ENSG00000255746 LOC102723544 - uncharacterized LOC102723544 ncRNA 453 chr15 60894999 60895416 + 1.5 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 213638 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 205-5 chr13 80943709 80943944 + 1.5 NA Intergenic Intergenic -74565 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 524.834 chr12 113596404 113597097 + 1.5 NA Intergenic L1ME1|LINE|L1 124747 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 294.667-6 chr2 145414810 145415066 + 1.5 NA Intergenic (TTTTAT)n|Simple_repeat|Simple_repeat 746971 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 325.166-2 chr22 26708599 26709075 + 1.5 NA intron (NR_110543, intron 1 of 5) intron (NR_110543, intron 1 of 5) 35994 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 354.667-2 chr19 31597631 31598024 + 1.5 NA Intergenic Intergenic 5546 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 289.5-6 chr20 43277370 43277854 + 1.5 NA Intergenic Intergenic -87706 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 311.833 chr10 35211608 35211966 + 1.5 NA exon (NM_181571, exon 8 of 8) exon (NM_181571, exon 8 of 8) 15885 NM_182721 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 462 chr12 37943293 37943790 + 1.5 NA Intergenic L1PA4|LINE|L1 -373233 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 167-56 chr7 38113051 38113199 + 1.5 NA Intergenic Intergenic -65120 NM_001363347 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 247.167 chr1 98422201 98422411 + 1.5 NA Intergenic Intergenic 211595 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 232.667-19 chr3 116004600 116004923 + 1.5 NA intron (NM_001318915, intron 3 of 8) intron (NM_001318915, intron 3 of 8) -99635 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 331.833-6 chr18 75173233 75173901 + 1.5 NA Intergenic Intergenic 31946 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 347-3 chr16 82147631 82148191 + 1.5 NA TTS (NM_005792) TTS (NM_005792) 22313 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 165.5-23 chr15 81171766 81171884 + 1.5 NA Intergenic L2b|LINE|L2 -25054 NM_001352685 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 325-4 chr9 2452235 2452644 + 1.5 NA Intergenic Intergenic -169348 NM_001322225 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 237.333-9 chr17 52518114 52518345 + 1.5 NA intron (NR_146898, intron 1 of 3) intron (NR_146898, intron 1 of 3) 127707 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 248.167-23 chr6 143477625 143477858 + 1.5 NA intron (NM_003630, intron 9 of 11) MIR|SINE|MIR 26936 NM_003630 8504 Hs.7277 NM_003630 ENSG00000034693 PEX3 PBD10A|PBD10B|TRG18 peroxisomal biogenesis factor 3 protein-coding 342.667 chr1 238257559 238257975 + 1.5 NA Intergenic L1M7|LINE|L1 228250 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 434.167-2 chr2 167699914 167700397 + 1.5 NA Intergenic AluJb|SINE|Alu -118517 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 317-5 chr20 478155 478394 + 1.5 NA 3' UTR (NM_001895, exon 13 of 13) 3' UTR (NM_001895, exon 13 of 13) -15741 NM_144628 128637 Hs.590876 NM_144628 ENSG00000125875 TBC1D20 C20orf140|WARBM4 TBC1 domain family member 20 protein-coding 324.333-4 chr4 104965948 104966406 + 1.5 NA Intergenic Intergenic -179698 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 200.5-21 chr2 114291089 114291343 + 1.5 NA Intergenic Intergenic -151425 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 232.667-27 chr7 7359438 7359904 + 1.5 NA intron (NM_001037763, intron 34 of 34) intron (NM_001037763, intron 34 of 34) 104517 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 246.5-24 chr8 89670638 89670955 + 1.5 NA Intergenic Intergenic 86915 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 342 chr1 227646057 227646466 + 1.5 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 51446 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 329.667-2 chr17 53806876 53807242 + 1.5 NA Intergenic Intergenic -15868 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 273-14 chr6 138874211 138874478 + 1.5 NA intron (NM_001077706, intron 13 of 21) intron (NM_001077706, intron 13 of 21) 78233 NM_001077706 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 150.167-44 chr4 33009074 33009311 + 1.5 NA Intergenic AluSx|SINE|Alu 658154 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 248.667-18 chr3 20036003 20036276 + 1.5 NA Intergenic Intergenic -4307 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 294.333-2 chr1 219132093 219132431 + 1.5 NA intron (NR_038845, intron 3 of 4) (T)n|Simple_repeat|Simple_repeat 41526 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 266.334 chr2 39573049 39573386 + 1.5 NA intron (NR_037875, intron 5 of 5) intron (NR_037875, intron 5 of 5) -92281 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 321.5-6 chr3 44132482 44132911 + 1.5 NA Intergenic Intergenic 18484 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 126.833-20 chr10 120407659 120407755 + 1.5 NA Intergenic Arthur1B|DNA|hAT-Tip100 -49247 NM_001318168 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 321.167-9 chr8 53232612 53233019 + 1.5 NA intron (NM_000912, intron 3 of 3) intron (NM_000912, intron 3 of 3) 18822 NM_000912 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 332.334-2 chr10 111135733 111136193 + 1.5 NA Intergenic Intergenic 21672 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 247.667-3 chr10 75539175 75539479 + 1.5 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) -13131 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 185.5-46 chr6 162130432 162130575 + 1.5 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -596629 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 322.833-4 chr3 142943830 142944217 + 1.5 NA Intergenic Intergenic 17348 NR_038455 100507389 Hs.38715 NR_038455 ENSG00000243818 LOC100507389 - uncharacterized LOC100507389 ncRNA 237-2 chr1 64890100 64890666 + 1.5 NA intron (NM_001321852, intron 1 of 24) MIRb|SINE|MIR 76166 NM_002227 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 301.166 chr4 148564913 148565267 + 1.5 NA Intergenic Intergenic -120392 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 361.333-4 chr2 157794401 157794794 + 1.5 NA intron (NM_001111067, intron 3 of 10) MIRb|SINE|MIR 44033 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 180.667-8 chr10 52828586 52828789 + 1.5 NA Intergenic L1MA4|LINE|L1 -56987 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 291.167-11 chr9 30415414 30415709 + 1.5 NA Intergenic Intergenic -7107 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 346.5 chr12 13364859 13365112 + 1.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR 11760 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 256.333-4 chr1 222678772 222678954 + 1.5 NA intron (NM_022831, intron 6 of 9) intron (NM_022831, intron 6 of 9) 33628 NM_022831 64853 Hs.156625 NM_022831 ENSG00000186063 AIDA C1orf80 axin interactor, dorsalization associated protein-coding 382.167-3 chr8 112268590 112268880 + 1.5 NA intron (NM_001363185, intron 55 of 66) intron (NM_001363185, intron 55 of 66) -374758 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 377 chr11 100094929 100095380 + 1.5 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) 539009 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 200.833-33 chr7 17068680 17069050 + 1.5 NA Intergenic Intergenic -186882 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 223.333-31 chr5 32928205 32928439 + 1.5 NA Intergenic Intergenic -19121 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 127.5-57 chr5 84676668 84676778 + 1.5 NA Intergenic Zaphod|DNA|hAT-Tip100 -291843 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 264.667-14 chr18 23155224 23155441 + 1.5 NA promoter-TSS (NM_138375) promoter-TSS (NM_138375) -493 NM_138375 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 369.667-3 chrX 70574231 70574477 + 1.5 NA intron (NM_001003811, intron 26 of 30) intron (NM_001003811, intron 26 of 30) -118360 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 425.333-2 chr3 8669365 8669834 + 1.5 NA Intergenic L1MC4a|LINE|L1 -17515 NM_015931 51066 Hs.736935 NM_015931 ENSG00000125046 SSUH2 C3orf32|SSU-2|fls485 ssu-2 homolog protein-coding 134.167-11 chr10 31517458 31517679 + 1.5 NA intron (NM_001323638, intron 10 of 12) L4_A_Mam|LINE|RTE-X -117813 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 168.833-53 chr9 37380978 37381158 + 1.5 NA Intergenic Intergenic -41628 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 209.5-28 chr3 183671946 183672398 + 1.5 NA intron (NM_001349426, intron 5 of 6) MamRep434|DNA|TcMar-Tigger -25625 NM_018023 55689 Hs.632575 NM_018023 ENSG00000163872 YEATS2 - YEATS domain containing 2 protein-coding 221.167-24 chr7 36330452 36330794 + 1.5 NA intron (NM_001199707, intron 5 of 5) L1MC4|LINE|L1 36617 NM_001300956 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 341.5-4 chr3 158210657 158211052 + 1.5 NA intron (NM_001271838, intron 4 of 9) intron (NM_001271838, intron 4 of 9) 100765 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 246.166-4 chr8 107249851 107250078 + 1.5 NA 3' UTR (NM_001146, exon 9 of 9) 3' UTR (NM_001146, exon 9 of 9) 86551 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 326.333-3 chr14 82172942 82173478 + 1.5 NA Intergenic Intergenic -430072 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 249.167-9 chr3 78926084 78926291 + 1.5 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 93272 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 366-4 chr4 97978645 97978953 + 1.5 NA intron (NM_174952, intron 6 of 10) MLT1H1-int|LTR|ERVL-MaLR 164677 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 322.5-5 chr2 114857414 114857749 + 1.5 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -24033 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 282.334-3 chr7 108593075 108593468 + 1.5 NA Intergenic Intergenic 23397 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 192.333-10 chr15 52145114 52145275 + 1.5 NA intron (NM_006578, intron 4 of 10) intron (NM_006578, intron 4 of 10) -32419 NM_001306168 10017 Hs.283672 NM_020396 ENSG00000137875 BCL2L10 BCL-B|Boo|Diva|bcl2-L-10 BCL2 like 10 protein-coding 364.334 chr17 47759430 47759862 + 1.5 NA Intergenic Intergenic 26410 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 287.833-5 chr3 196908136 196908446 + 1.5 NA intron (NM_001308045, intron 6 of 8) AluJr|SINE|Alu -31586 NR_046630 100874001 Hs.591671 NR_046630 NCBP2-AS1 - NCBP2 antisense RNA 1 ncRNA 277.5-11 chr5 25427127 25427378 + 1.5 NA Intergenic Intergenic 236299 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 237.5-16 chr3 88607267 88607525 + 1.5 NA Intergenic Intergenic 268940 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 309.5-3 chr14 84508243 84508479 + 1.5 NA Intergenic Intergenic -763571 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 235.5-25 chr21 30453417 30453811 + 1.5 NA Intergenic Intergenic 13335 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 321.167 chr1 164052667 164053010 + 1.5 NA Intergenic Intergenic -506522 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 131.167-34 chr17 52977387 52977489 + 1.5 NA Intergenic L1MC1|LINE|L1 -8067 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 180-12 chr14 83309936 83310123 + 1.5 NA Intergenic Intergenic 667397 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 382.167 chr17 54052611 54053061 + 1.5 NA Intergenic HAL1|LINE|L1 229909 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 118.833-67 chr8 86354151 86354375 + 1.5 NA intron (NM_007013, intron 1 of 24) MER46C|DNA|TcMar-Tigger 11716 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 224.334-3 chr21 18960881 18961050 + 1.5 NA Intergenic Intergenic -201153 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 197-31 chr3 27292180 27292416 + 1.5 NA intron (NM_152534, intron 17 of 38) intron (NM_152534, intron 17 of 38) -75775 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 207.167-32 chr8 120608008 120608329 + 1.5 NA intron (NM_021021, intron 3 of 6) L1MEd|LINE|L1 -153085 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 214-20 chr2 37313573 37313757 + 1.5 NA intron (NM_005813, intron 1 of 17) L1MEc|LINE|L1 3419 NM_005813 23683 Hs.660757 NM_005813 ENSG00000115825 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 176.333-15 chr12 29847390 29847515 + 1.5 NA Intergenic L1MA9|LINE|L1 -62693 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 253.167-15 chr7 70119746 70120017 + 1.5 NA intron (NM_015570, intron 3 of 18) Charlie7|DNA|hAT-Charlie 521406 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 238.667-7 chr14 62815128 62815391 + 1.5 NA intron (NM_139318, intron 8 of 10) L1ME3A|LINE|L1 230199 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 297.5-3 chr11 126739269 126739517 + 1.5 NA intron (NM_001301097, intron 1 of 15) MIRc|SINE|MIR 83307 NR_120533 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 342-8 chr4 157172626 157173028 + 1.5 NA TTS (NM_001166060) TTS (NM_001166060) -47757 NM_001083619 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 209.5-33 chr5 65519187 65519359 + 1.5 NA intron (NM_001267038, intron 10 of 10) MER103C|DNA|hAT-Charlie -37353 NR_135689 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 391.167-2 chr3 151331784 151332246 + 1.5 NA intron (NM_053002, intron 14 of 42) intron (NM_053002, intron 14 of 42) -2466 NM_176894 53829 Hs.546396 NM_023914 ENSG00000181631 P2RY13 FKSG77|GPCR1|GPR86|GPR94|P2Y13|SP174 purinergic receptor P2Y13 protein-coding 291.167-6 chr5 110146411 110146699 + 1.5 NA Intergenic L1MEg|LINE|L1 263373 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 315.5-6 chr5 123560002 123560406 + 1.5 NA intron (NM_001044723, intron 3 of 12) L1MB3|LINE|L1 14787 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 377.334-2 chr3 5049456 5049832 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -69683 NR_125915 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 156.167-6 chr10 72998048 72998276 + 1.5 NA Intergenic HAL1M8|LINE|L1 -43356 NM_032562 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 256-13 chr4 135088683 135088968 + 1.5 NA Intergenic Intergenic 34734 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 259-16 chr4 21179381 21180126 + 1.5 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) 124153 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 215.5-13 chr15 72033189 72033441 + 1.5 NA intron (NM_006901, intron 2 of 41) intron (NM_006901, intron 2 of 41) -80943 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 517.5 chr6 65503517 65504547 + 1.5 NA intron (NM_001292009, intron 2 of 43) L1MCa|LINE|L1 75772 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 250-24 chr8 36588654 36588898 + 1.5 NA Intergenic Intergenic -195598 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 285.333-2 chr1 191047044 191047607 + 1.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 181173 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 405.5-2 chr10 32568982 32569459 + 1.5 NA intron (NR_109826, intron 15 of 16) intron (NR_109826, intron 15 of 16) 123080 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 231.167-25 chr5 61597260 61597473 + 1.5 NA Intergenic Intergenic -40394 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 182.833-39 chr4 150286453 150286718 + 1.5 NA intron (NM_001199282, intron 53 of 56) intron (NM_001199282, intron 53 of 56) 208140 NM_001040261 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 166.333-62 chr5 81297994 81298143 + 1.5 NA intron (NR_034122, intron 1 of 3) intron (NR_034122, intron 1 of 3) 3501 NR_034121 100131067 Hs.655855 NR_034121 ENSG00000247572 CKMT2-AS1 - CKMT2 antisense RNA 1 ncRNA 121.167-26 chr14 53100775 53100902 + 1.5 NA intron (NM_030637, intron 2 of 11) intron (NM_030637, intron 2 of 11) 52485 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 221-6 chr12 15608376 15608578 + 1.5 NA Intergenic L1M4a1|LINE|L1 61866 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 150.833-11 chr15 23925873 23926016 + 1.5 NA Intergenic Intergenic -49203 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 266-19 chr5 107998495 107998891 + 1.5 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -327756 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 388.167-4 chr18 12827958 12828531 + 1.5 NA intron (NM_080423, intron 4 of 8) HAL1M8|LINE|L1 12718 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 256.833-13 chr7 48154203 48154409 + 1.5 NA Intergenic L1MEf|LINE|L1 -17152 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 228-13 chr16 80412897 80413171 + 1.5 NA intron (NR_120307, intron 2 of 5) MER5B|DNA|hAT-Charlie -127700 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 185.833-10 chr12 27802660 27802871 + 1.5 NA 3' UTR (NM_020782, exon 3 of 3) 3' UTR (NM_020782, exon 3 of 3) 22532 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 302.833-7 chr7 37242035 37242563 + 1.5 NA intron (NM_001206480, intron 7 of 21) L1MEf|LINE|L1 111369 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 144.667-101 chr9 37781072 37781235 + 1.5 NA intron (NM_001002269, intron 2 of 2) intron (NM_001002269, intron 2 of 2) 3911 NM_016042 51010 Hs.602571 NM_016042 ENSG00000107371 EXOSC3 CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10 exosome component 3 protein-coding 137.5-96 chr8 111066476 111066619 + 1.5 NA Intergenic Intergenic -39114 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 248-3 chr15 58434779 58435053 + 1.5 NA TTS (NR_120338) TTS (NR_120338) 2925 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 233-17 chr20 58613670 58613862 + 1.5 NA intron (NR_034147, intron 6 of 6) intron (NR_034147, intron 6 of 6) -21006 NR_125359 79160 Hs.280135 NR_125359 ENSG00000268941 LINC01711 - long intergenic non-protein coding RNA 1711 ncRNA 308.333-4 chr12 90530297 90530698 + 1.5 NA Intergenic L1ME3G|LINE|L1 237179 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 282-11 chr18 39973826 39974053 + 1.5 NA Intergenic MIRc|SINE|MIR -92347 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 190.5-51 chr8 87080999 87081283 + 1.5 NA intron (NM_173538, intron 4 of 10) L1MEf|LINE|L1 214726 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 169.667-6 chr10 52174673 52174860 + 1.5 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 139362 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 321-4 chr12 76141607 76141940 + 1.5 NA Intergenic Intergenic -57088 NM_004537 4673 Hs.524599 NM_004537 ENSG00000187109 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1 like 1 protein-coding 382.333-3 chr18 12787771 12788268 + 1.5 NA intron (NM_080423, intron 8 of 8) intron (NM_080423, intron 8 of 8) -38597 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 555 chr1 83633087 83634068 + 1.5 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 187523 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 278.666-5 chr7 66249089 66249445 + 1.5 NA intron (NM_003596, intron 2 of 5) intron (NM_003596, intron 2 of 5) 43933 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 414.501 chr5 37622956 37623356 + 1.5 NA intron (NM_001345998, intron 10 of 17) MER113|DNA|hAT-Charlie 211666 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 120.167-75 chr7 48669732 48669817 + 1.5 NA Intergenic L3|LINE|CR1 -254773 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 260.167-4 chr10 61368509 61368826 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -83972 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 328.667-15 chr7 36813820 36814182 + 1.5 NA Intergenic MIRc|SINE|MIR -89452 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 191.667-55 chr7 110169455 110169629 + 1.5 NA Intergenic L1PA16|LINE|L1 -209329 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 169.167-43 chr8 105779019 105779197 + 1.5 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 281395 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 376-6 chr6 51300931 51301327 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -320741 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 350.333-7 chr5 177169677 177170098 + 1.5 NA intron (NM_172349, intron 3 of 23) L1M4|LINE|L1 35658 NM_001365684 64324 Hs.106861 NM_022455 ENSG00000165671 NSD1 ARA267|KMT3B|SOTOS|SOTOS1|STO nuclear receptor binding SET domain protein 1 protein-coding 306.501-2 chr18 4405102 4405344 + 1.5 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 50043 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 319.333-8 chr2 133817040 133817343 + 1.5 NA Intergenic L1MA4A|LINE|L1 -248728 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 421.167 chr6 133268414 133268739 + 1.5 NA intron (NM_172103, intron 1 of 18) intron (NM_172103, intron 1 of 18) 27077 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 309.5-8 chr6 75109012 75109276 + 1.5 NA exon (NM_004370, exon 52 of 66) exon (NM_004370, exon 52 of 66) 19638 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 190.5-4 chr1 151954507 151954716 + 1.5 NA Intergenic MER65-int|LTR|ERV1 39248 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 344-2 chr15 58834392 58834854 + 1.5 NA intron (NM_001040450, intron 6 of 8) intron (NM_001040450, intron 6 of 8) 63321 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 397 chr14 99306594 99307109 + 1.5 NA Intergenic L1ME3A|LINE|L1 -34654 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 176.5-70 chrX 43814117 43814268 + 1.5 NA intron (NM_000898, intron 3 of 14) intron (NM_000898, intron 3 of 14) 68258 NM_000898 4129 Hs.654473 NM_000898 ENSG00000069535 MAOB - monoamine oxidase B protein-coding 376-3 chr4 150487231 150487571 + 1.5 NA intron (NM_001367550, intron 42 of 56) intron (NM_001367550, intron 42 of 56) -91688 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 402.833-2 chr2 52143509 52144016 + 1.5 NA intron (NR_135237, intron 7 of 10) LTR48B|LTR|ERV1 -226886 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 436.167-2 chr14 99409325 99409879 + 1.5 NA TTS (NM_199123) TTS (NM_199123) 71257 NM_032233 84193 Hs.510407 NM_032233 ENSG00000183576 SETD3 C14orf154|hSETD3 SET domain containing 3, actin histidine methyltransferase protein-coding 369.833-3 chr3 41084101 41084402 + 1.5 NA Intergenic Intergenic -115254 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 219.833-13 chr22 39338172 39338452 + 1.5 NA Intergenic L1M5|LINE|L1 -11637 NM_145731 9145 Hs.216226 NM_004711 ENSG00000100321 SYNGR1 - synaptogyrin 1 protein-coding 252-7 chr2 13464945 13465284 + 1.5 NA Intergenic L1MC3|LINE|L1 -458101 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 180.5-50 chr8 104697436 104697606 + 1.5 NA Intergenic Intergenic -108497 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 311-8 chr6 160250370 160250676 + 1.5 NA intron (NM_003058, intron 3 of 10) intron (NM_003058, intron 3 of 10) 8298 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 318.167-2 chr16 6590075 6590299 + 1.5 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -183622 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 276-10 chr2 187491064 187491379 + 1.5 NA intron (NM_001318941, intron 4 of 7) L1PB4|LINE|L1 -42969 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 158.333-16 chr11 100305429 100305614 + 1.5 NA intron (NM_001243270, intron 19 of 23) MER102c|DNA|hAT-Charlie -381767 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 266.5-8 chr2 150211087 150211325 + 1.5 NA Intergenic Intergenic 45801 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 159-43 chr2 133222758 133222935 + 1.5 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -43349 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 241.5-24 chr6 82424474 82424716 + 1.5 NA Intergenic L2c|LINE|L2 60351 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 211.5-15 chr2 144304128 144304421 + 1.5 NA intron (NM_001354354, intron 1 of 12) L1ME1|LINE|L1 -8961 NM_001354361 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 256.167-5 chr11 108286586 108286848 + 1.5 NA intron (NM_001351834, intron 27 of 63) MER51A|LTR|ERV1 63188 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 364.333-2 chr15 91269762 91270016 + 1.5 NA intron (NM_001323036, intron 8 of 11) intron (NM_001323036, intron 8 of 11) 168093 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 162-26 chr16 63924429 63924625 + 1.5 NA Intergenic Intergenic 1197536 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 284.5-4 chr10 89578592 89578857 + 1.5 NA TTS (NM_148978) TTS (NM_148978) 14103 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 330.166-3 chr17 59004437 59004856 + 1.5 NA intron (NR_148346, intron 22 of 23) L1MEd|LINE|L1 102234 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 137.333-25 chr14 61475173 61475355 + 1.5 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 94930 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 198.834-3 chr10 128119947 128120205 + 1.5 NA intron (NM_001145966, intron 4 of 13) intron (NM_001145966, intron 4 of 13) 6347 NM_001145966 4288 Hs.80976 NM_002417 ENSG00000148773 MKI67 KIA|MIB-|MIB-1|PPP1R105 marker of proliferation Ki-67 protein-coding 328.167 chr10 108704889 108705257 + 1.5 NA Intergenic Intergenic -635780 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 466.167 chr5 3297479 3298305 + 1.5 NA Intergenic Intergenic 120057 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 238.5-7 chr10 113668714 113668880 + 1.5 NA Intergenic MLT2B3|LTR|ERVL -4727 NM_001261463 4892 Hs.268788 NM_006175 ENSG00000197893 NRAP N-RAP nebulin related anchoring protein protein-coding 159.167-44 chr4 32601673 32601806 + 1.5 NA Intergenic Intergenic 250701 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 327-6 chr5 90436463 90436969 + 1.5 NA Intergenic L2a|LINE|L2 26716 NR_105024 731157 Hs.551062 NR_105024 ENSG00000255647 LOC731157 - uncharacterized LOC731157 ncRNA 254-2 chr1 152319830 152320047 + 1.5 NA intron (NM_002016, intron 1 of 2) L1MEg|LINE|L1 5265 NM_002016 2312 Hs.654510 NM_002016 ENSG00000143631 FLG ATOD2 filaggrin protein-coding 316.833 chr1 82189905 82190285 + 1.5 NA Intergenic Intergenic 387642 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 247.334 chr10 118475917 118476211 + 1.5 NA Intergenic AluJo|SINE|Alu 118956 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 216.833-9 chr13 33851376 33851600 + 1.5 NA intron (NM_181558, intron 8 of 8) Tigger2a|DNA|TcMar-Tigger 33339 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 227.333-4 chr10 52281407 52281566 + 1.5 NA intron (NM_001098512, intron 13 of 17) intron (NM_001098512, intron 13 of 17) 32642 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 228.333-27 chr5 63009736 63009933 + 1.5 NA Intergenic L1MA8|LINE|L1 431015 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 252-17 chr8 122383511 122383797 + 1.5 NA Intergenic L1MC1|LINE|L1 184990 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 303.333-2 chr11 6966490 6966813 + 1.5 NA intron (NR_149005, intron 6 of 6) L1MC|LINE|L1 38989 NM_001354854 7762 Hs.523457 NM_013250 ENSG00000149054 ZNF215 BAZ-2|BAZ2|ZKSCAN11|ZSCAN43 zinc finger protein 215 protein-coding 308.5-14 chr6 121205089 121205451 + 1.5 NA intron (NR_104452, intron 22 of 35) MER5B|DNA|hAT-Charlie 129210 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 232.167-29 chr9 77484812 77485133 + 1.5 NA intron (NR_121184, intron 2 of 4) Tigger1|DNA|TcMar-Tigger 37323 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 283-7 chr3 176241343 176241580 + 1.5 NA Intergenic Intergenic -3090 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 226.667-3 chr1 113322422 113322675 + 1.5 NA Intergenic L2a|LINE|L2 -67967 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 159.833-27 chr2 67158534 67158716 + 1.5 NA intron (NR_038844, intron 4 of 7) intron (NR_038844, intron 4 of 7) -54783 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 142.5-36 chr2 18806142 18806318 + 1.5 NA Intergenic L1MEc|LINE|L1 -216650 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 215-2 chr1 114874360 114874710 + 1.5 NA non-coding (NR_104211, exon 9 of 33) non-coding (NR_104211, exon 9 of 33) 19672 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 263.5-6 chr11 117328721 117328966 + 1.5 NA intron (NM_014956, intron 1 of 32) intron (NM_014956, intron 1 of 32) 989 NM_014956 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 161.333-11 chr11 27092086 27092311 + 1.5 NA intron (NR_125767, intron 3 of 4) intron (NR_125767, intron 3 of 4) 51383 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 192.666 chr10 131962981 131963258 + 1.5 NA Intergenic AluSx3|SINE|Alu 18894 NM_004052 664 Hs.144873 NM_004052 ENSG00000176171 BNIP3 NIP3 BCL2 interacting protein 3 protein-coding 169.5-61 chr6 62351581 62351814 + 1.5 NA Intergenic Intergenic -65470 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 185.5-12 chr12 39411232 39411359 + 1.5 NA intron (NM_001173464, intron 1 of 37) MER5A1|DNA|hAT-Charlie 31825 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 140-69 chr5 168980960 168981123 + 1.5 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) -32186 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 344-6 chr8 31407406 31407858 + 1.5 NA Intergenic L1MD|LINE|L1 -232120 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 194.833-26 chr5 146484520 146484759 + 1.5 NA intron (NM_006706, intron 14 of 21) intron (NM_006706, intron 14 of 21) 31474 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 513.001 chr8 90755094 90755552 + 1.5 NA Intergenic Intergenic -36452 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 379.833-3 chr12 27878862 27879297 + 1.5 NA Intergenic L1MA8|LINE|L1 90897 NM_198966 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 269.167 chr1 175587681 175588041 + 1.5 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 155734 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 290.5-13 chr4 100495969 100496412 + 1.5 NA intron (NM_001159694, intron 1 of 10) intron (NM_001159694, intron 1 of 10) 21832 NM_016242 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 231-25 chr6 79225480 79225766 + 1.5 NA intron (NM_138730, intron 1 of 5) intron (NM_138730, intron 1 of 5) -8051 NR_040671 100288198 Hs.586270 NR_040671 ENSG00000270362 HMGN3-AS1 - HMGN3 antisense RNA 1 ncRNA 190.667-26 chr2 210694711 210694891 + 1.5 NA Intergenic LTR33|LTR|ERVL 77230 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 252.5-7 chr12 70390401 70390682 + 1.5 NA intron (NM_014505, intron 1 of 2) ERVL-E-int|LTR|ERVL 24251 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 139.167-67 chr8 92278092 92278206 + 1.5 NA Intergenic Intergenic -174764 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 169.834-4 chr22 38684509 38684715 + 1.5 NA TTS (NM_014876) TTS (NM_014876) 2655 NM_020243 56993 Hs.595072 NM_020243 ENSG00000100216 TOMM22 1C9-2|MST065|MSTP065|TOM22 translocase of outer mitochondrial membrane 22 protein-coding 174.5-49 chr7 47235710 47235914 + 1.5 NA Intergenic Intergenic 228991 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 282.667-10 chr4 30777813 30778192 + 1.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 57633 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 333-4 chr3 121643466 121643727 + 1.5 NA intron (NM_001292041, intron 5 of 12) intron (NM_001292041, intron 5 of 12) 17307 NM_005335 3059 Hs.14601 NM_005335 ENSG00000180353 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 262.5-2 chr1 147730423 147730673 + 1.5 NA Intergenic L1MA4A|LINE|L1 30054 NM_181703 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 249.5-9 chr17 61247274 61247634 + 1.5 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 120250 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 280-11 chr21 19920834 19921100 + 1.5 NA Intergenic Intergenic -21212 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 296.167-2 chr17 62299759 62299975 + 1.5 NA Intergenic Intergenic -24212 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 147-27 chr19 46152029 46152151 + 1.5 NA intron (NM_001002915, intron 2 of 4) L1MB5|LINE|L1 3852 NM_001135113 147920 Hs.99376 NM_001002915 ENSG00000204866 IGFL2 UNQ645|VPRI645 IGF like family member 2 protein-coding 170.333-40 chr2 207101364 207101624 + 1.5 NA intron (NR_073108, intron 3 of 4) L2c|LINE|L2 8579 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 239.667-11 chr15 38116364 38116558 + 1.5 NA Intergenic Intergenic -43471 NR_147199 107984773 Hs.285193 NR_147199 ENSG00000236914 LINC01852 - long intergenic non-protein coding RNA 1852 ncRNA 314.167-4 chr17 54985702 54986059 + 1.5 NA intron (NM_178509, intron 2 of 17) intron (NM_178509, intron 2 of 17) -17095 NM_001162862 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 188.667-66 chr8 125082103 125082335 + 1.5 NA intron (NM_014846, intron 4 of 28) intron (NM_014846, intron 4 of 28) 9573 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 224-22 chr2 54418387 54418652 + 1.5 NA Intergenic MIR|SINE|MIR -37808 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 235.5-38 chr9 106078379 106078735 + 1.5 NA Intergenic Charlie18a|DNA|hAT-Charlie 384016 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 419-2 chr6 71685306 71685676 + 1.5 NA Intergenic Intergenic -201212 NM_014989 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 271.5-4 chr12 54606427 54606797 + 1.5 NA Intergenic Intergenic 3850 NR_003039 644076 Hs.483519 NR_003039 ENSG00000257780 GLYCAM1 - glycosylation dependent cell adhesion molecule 1 (pseudogene) pseudo 246.5-23 chr8 84068071 84068329 + 1.5 NA Intergenic Intergenic -114587 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 254.333-10 chr16 78289662 78289934 + 1.5 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 190144 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 163.5-14 chr11 94275387 94275575 + 1.5 NA Intergenic Intergenic -30156 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 484-3 chr7 24820868 24821360 + 1.5 NA intron (NR_104111, intron 15 of 21) intron (NR_104111, intron 15 of 21) -63175 NM_001127454 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 159-64 chr7 17312586 17312730 + 1.5 NA intron (NM_001621, intron 2 of 10) intron (NM_001621, intron 2 of 10) 14006 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 221.667-3 chr1 169249406 169249737 + 1.5 NA intron (NR_104229, intron 7 of 12) L1PB3|LINE|L1 118226 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 265.333-16 chr4 82940346 82940705 + 1.5 NA intron (NR_110253, intron 3 of 10) AluSz6|SINE|Alu -39609 NR_034076 100499177 Hs.728916 NR_034075 ENSG00000251022 THAP9-AS1 - THAP9 antisense RNA 1 ncRNA 471.5 chr1 150058890 150059237 + 1.5 NA Intergenic AluSg4|SINE|Alu -8319 NM_001279353 11311 Hs.443750 NM_007259 ENSG00000136631 VPS45 H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A vacuolar protein sorting 45 homolog protein-coding 236-3 chr10 77121802 77122115 + 1.5 NA intron (NM_001271519, intron 5 of 28) intron (NM_001271519, intron 5 of 28) -18873 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 353.167-5 chr8 136419416 136419797 + 1.5 NA Intergenic Intergenic -111192 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 270-5 chr17 55392177 55392504 + 1.5 NA TTS (NM_012329) TTS (NM_012329) 29495 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 226.333-33 chr5 14177994 14178210 + 1.5 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 34760 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 150-11 chr11 67210394 67210517 + 1.5 NA intron (NR_027473, intron 6 of 20) intron (NR_027473, intron 6 of 20) -29559 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 351.5-2 chr12 51783512 51783981 + 1.5 NA intron (NM_001330260, intron 21 of 26) intron (NM_001330260, intron 21 of 26) 48171 NM_001013690 401720 Hs.648218 NM_001013690 ENSG00000261308 FIGNL2 - fidgetin like 2 protein-coding 237-18 chr5 98964969 98965288 + 1.5 NA intron (NR_151718, intron 1 of 3) L1MC5a|LINE|L1 -35414 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 224.5-4 chr10 124098875 124099125 + 1.5 NA Intergenic MER5B|DNA|hAT-Charlie -5402 NM_001270764 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 316-7 chr4 139811278 139811521 + 1.5 NA intron (NM_018717, intron 2 of 4) intron (NM_018717, intron 2 of 4) 145580 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 199.667-37 chr20 48332300 48332506 + 1.5 NA Intergenic Intergenic -27508 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 292.667-9 chr2 183856322 183856845 + 1.5 NA Intergenic L1PB1|LINE|L1 -522392 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 481-2 chr9 26478871 26479316 + 1.5 NA Intergenic L1ME3G|LINE|L1 412418 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 297.167-7 chr9 20521197 20521459 + 1.5 NA intron (NM_001286691, intron 2 of 10) AluSx|SINE|Alu -18986 NR_039685 100616441 NR_039685 ENSG00000264941 MIR4474 - microRNA 4474 ncRNA 351.5-3 chr14 52952610 52952935 + 1.5 NA Intergenic Intergenic -1675 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 235.833-8 chr14 63873113 63873363 + 1.5 NA intron (NM_015180, intron 1 of 114) intron (NM_015180, intron 1 of 114) 20234 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 211.167-11 chr17 26633065 26633304 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 456057 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 462.5-2 chr9 128595364 128595823 + 1.5 NA intron (NM_003127, intron 24 of 55) L1MB5|LINE|L1 43006 NM_001195532 6709 Hs.372331 NM_003127 ENSG00000197694 SPTAN1 EIEE5|NEAS|SPTA2 spectrin alpha, non-erythrocytic 1 protein-coding 413.333-4 chrX 47215056 47215400 + 1.5 NA TTS (NM_003334) TTS (NM_003334) -3075 NM_033018 5127 Hs.496068 NM_006201 ENSG00000102225 CDK16 PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1 cyclin dependent kinase 16 protein-coding 408.5-3 chr2 194780976 194781503 + 1.5 NA Intergenic L1M6|LINE|L1 50644 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 233.5-12 chr2 123793796 123794213 + 1.5 NA Intergenic L1MB4|LINE|L1 231170 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 234-19 chr2 19800362 19800525 + 1.5 NA Intergenic Intergenic -68411 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 328.833-3 chr3 97318596 97318897 + 1.5 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -120861 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 288.667-9 chr5 117679616 117679905 + 1.5 NA Intergenic Intergenic -50601 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 207-34 chr3 76046832 76047110 + 1.5 NA Intergenic L4_A_Mam|LINE|RTE-X -261422 NM_001290210 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 249.833-7 chr14 53696319 53696605 + 1.5 NA Intergenic Intergenic 252022 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 328.333-2 chr13 55248317 55248778 + 1.5 NA Intergenic L1MA4|LINE|L1 74093 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 247.167-15 chr3 108883307 108883764 + 1.5 NA Intergenic L1MD1|LINE|L1 60749 NM_016388 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 385.167-2 chr13 37115414 37115873 + 1.5 NA Intergenic L3|LINE|CR1 -9979 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 261.333-16 chr5 57861942 57862277 + 1.5 NA Intergenic Intergenic 37053 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 235.166 chr20 35903114 35903310 + 1.5 NA intron (NM_016436, intron 10 of 17) intron (NM_016436, intron 10 of 17) 51414 NM_033630 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 245-10 chr15 97135904 97136087 + 1.5 NA Intergenic Intergenic 352560 NR_158223 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 238-10 chr15 67778822 67778995 + 1.5 NA intron (NM_001206804, intron 21 of 21) intron (NM_001206804, intron 21 of 21) -46601 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 230.167-7 chr17 44660414 44660646 + 1.5 NA intron (NM_001145080, intron 2 of 7) AluSx1|SINE|Alu 4062 NM_001145080 284071 Hs.349758 NM_001033659 ENSG00000180336 MEIOC C17orf104 meiosis specific with coiled-coil domain protein-coding 419.167-2 chr11 63122872 63123452 + 1.5 NA intron (NM_173586, intron 2 of 3) intron (NM_173586, intron 2 of 3) 21059 NM_173586 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 181.833-20 chr17 62642053 62642255 + 1.5 NA intron (NM_006039, intron 1 of 29) L1MC4|LINE|L1 14484 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 235.5-36 chr9 27167796 27168021 + 1.5 NA intron (NM_001290077, intron 2 of 21) intron (NM_001290077, intron 2 of 21) 58767 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 292.5-18 chr9 23384228 23384495 + 1.5 NA Intergenic Intergenic 288038 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 280.5-8 chr3 34163922 34164115 + 1.5 NA Intergenic MER3|DNA|hAT-Charlie 365388 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 126.833-54 chr5 122391177 122391270 + 1.5 NA intron (NR_131762, intron 2 of 9) intron (NR_131762, intron 2 of 9) 134 NR_131761 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 347-2 chr15 81194648 81194985 + 1.5 NA Intergenic Intergenic -2063 NM_001352685 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 289.5-2 chr1 86947314 86947645 + 1.5 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) 32844 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 180.333-33 chr2 61903032 61903211 + 1.5 NA intron (NM_001321781, intron 1 of 2) intron (NM_001321781, intron 1 of 2) -2521 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 226.5-14 chr16 79934459 79934698 + 1.5 NA Intergenic Intergenic 139329 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 349.833-2 chr11 24103735 24104106 + 1.5 NA Intergenic L1PB4|LINE|L1 -393133 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 278.5-13 chr6 153793282 153793592 + 1.5 NA Intergenic Intergenic -217059 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 274.333-9 chr4 30906258 30906674 + 1.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 186097 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 292.833-9 chr5 61507685 61507973 + 1.5 NA intron (NM_020928, intron 4 of 13) intron (NM_020928, intron 4 of 13) -129931 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 312.5-2 chr13 93006632 93006893 + 1.5 NA Intergenic MSTB-int|LTR|ERVL-MaLR -38579 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 370-7 chr8 129158239 129158635 + 1.5 NA Intergenic L1M6|LINE|L1 82803 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 207-22 chr19 28075535 28075809 + 1.5 NA Intergenic Intergenic -281732 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 268.5-14 chr4 73913475 73913697 + 1.5 NA Intergenic Intergenic 44193 NR_046035 2919 Hs.789 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 C-X-C motif chemokine ligand 1 protein-coding 132-91 chr8 14020539 14020670 + 1.5 NA Intergenic L1MC5|LINE|L1 390914 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 475.001 chr18 67910038 67910505 + 1.5 NA Intergenic Intergenic -95449 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 272-17 chr8 122852133 122852388 + 1.5 NA intron (NM_001362797, intron 1 of 4) intron (NM_001362797, intron 1 of 4) 70605 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 120.667-106 chr7 85486457 85486559 + 1.5 NA intron (NR_134240, intron 3 of 3) intron (NR_134240, intron 3 of 3) 65386 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 191.834-6 chr4 106987196 106987430 + 1.5 NA intron (NM_014421, intron 1 of 3) intron (NM_014421, intron 1 of 3) 49000 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 388.5-3 chr4 65764412 65764906 + 1.5 NA Intergenic L1PA13|LINE|L1 -94164 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 353.5-4 chr17 61931728 61932017 + 1.5 NA Intergenic Intergenic -3890 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 136-3 chr1 110793274 110793501 + 1.5 NA Intergenic L1PA16|LINE|L1 -77812 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 254-29 chr7 32227935 32228270 + 1.5 NA intron (NM_001322059, intron 1 of 17) MLT1F|LTR|ERVL-MaLR 71226 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 154.5-40 chr2 223295550 223295711 + 1.5 NA Intergenic Intergenic 243700 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 328.5-4 chr21 16696411 16696938 + 1.5 NA Intergenic Intergenic 106437 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 130.667-90 chr7 96239229 96239369 + 1.5 NA intron (NM_001160210, intron 3 of 17) intron (NM_001160210, intron 3 of 17) -19543 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 179.333-5 chr10 48420972 48421151 + 1.5 NA intron (NM_001278548, intron 5 of 9) intron (NM_001278548, intron 5 of 9) 19449 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 261-24 chr8 120925209 120925440 + 1.5 NA Intergenic L2a|LINE|L2 -113278 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 217.667-47 chr7 104369425 104369603 + 1.5 NA intron (NM_199000, intron 1 of 2) L1ME3|LINE|L1 40858 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 454.5 chr12 9706564 9707316 + 1.5 NA Intergenic L1PA12|LINE|L1 26359 NM_172004 160365 Hs.560087 NM_172004 ENSG00000184293 CLECL1 DCAL-1|DCAL1 C-type lectin like 1 protein-coding 289.667-6 chr20 50290174 50290431 + 1.5 NA Intergenic Intergenic -2418 NR_034124 284751 Hs.282325 NM_001025463 ENSG00000203999 LINC01270 - long intergenic non-protein coding RNA 1270 ncRNA 288.833-5 chr17 59534765 59535057 + 1.5 NA Intergenic LTR23|LTR|ERV1 -8054 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 596.666 chr2 188816248 188817044 + 1.5 NA Intergenic L1MB5|LINE|L1 -26523 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 142.167-87 chr9 84804497 84804620 + 1.5 NA intron (NM_001369547, intron 13 of 13) intron (NM_001369547, intron 13 of 13) 98657 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 123-68 chr3 143524031 143524137 + 1.5 NA intron (NM_173653, intron 9 of 15) L2|LINE|L2 181838 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 319.667-8 chr2 135116794 135117116 + 1.5 NA intron (NM_001172435, intron 7 of 24) intron (NM_001172435, intron 7 of 24) -19673 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 725.833 chr12 38902821 38903720 + 1.5 NA intron (NM_153634, intron 1 of 19) intron (NM_153634, intron 1 of 19) 2321 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 246.333-2 chr10 53902314 53902481 + 1.5 NA intron (NM_001354411, intron 27 of 34) intron (NM_001354411, intron 27 of 34) -583833 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 311-5 chr3 100463590 100463937 + 1.5 NA Intergenic L2a|LINE|L2 -28856 NM_001363876 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 276.666-2 chr1 166641921 166642277 + 1.5 NA Intergenic L1PA16|LINE|L1 38183 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 390.5-4 chr16 4566571 4566979 + 1.5 NA intron (NM_001145011, intron 1 of 15) L1M4|LINE|L1 10285 NM_001145011 342346 Hs.684212 NM_001145011 ENSG00000205832 C16orf96 - chromosome 16 open reading frame 96 protein-coding 256.834-3 chr2 168715809 168716057 + 1.5 NA intron (NM_001256126, intron 7 of 10) intron (NM_001256126, intron 7 of 10) 70496 NR_045786 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 - CERS6 antisense RNA 1 ncRNA 221.5-27 chr4 83575875 83576041 + 1.5 NA intron (NM_001256421, intron 3 of 12) L1ME3C|LINE|L1 39850 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 138-95 chr6 165600909 165601021 + 1.5 NA intron (NM_006661, intron 1 of 22) intron (NM_006661, intron 1 of 22) 61135 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 256.166-2 chr4 44969317 44969704 + 1.5 NA Intergenic Intergenic -242876 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 225.333-36 chr9 74886272 74886471 + 1.5 NA intron (NM_017662, intron 1 of 38) intron (NM_017662, intron 1 of 38) 976 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 346-5 chr8 18847585 18847944 + 1.5 NA intron (NM_015310, intron 4 of 15) MIR3|SINE|MIR -38897 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 251.5-18 chr6 55407749 55408177 + 1.5 NA Intergenic Intergenic 80494 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 295.5-7 chr5 160618523 160618899 + 1.5 NA intron (NM_001366652, intron 14 of 24) intron (NM_001366652, intron 14 of 24) 66680 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 402 chr12 22891082 22891729 + 1.5 NA Intergenic L1PA16|LINE|L1 266234 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 283.833-9 chr9 26312641 26312911 + 1.5 NA Intergenic Intergenic 246101 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 150.833-32 chr4 65373103 65373277 + 1.5 NA intron (NM_182472, intron 8 of 16) intron (NM_182472, intron 8 of 16) 296298 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 308.667-7 chr8 5046056 5046537 + 1.5 NA Intergenic L1ME3G|LINE|L1 -51382 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 288.333-12 chr6 103381763 103382048 + 1.5 NA Intergenic L1M4|LINE|L1 1477641 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 367.167 chr5 148302962 148303305 + 1.5 NA intron (NR_105057, intron 3 of 4) intron (NR_105057, intron 3 of 4) -9290 NM_032566 84651 Hs.244569 NM_032566 ENSG00000145879 SPINK7 ECG2|ECRG2 serine peptidase inhibitor, Kazal type 7 (putative) protein-coding 213.167-8 chr12 18220708 18220886 + 1.5 NA Intergenic Intergenic -40743 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 170-30 chr18 7861468 7861605 + 1.5 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 294220 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 273.5-6 chr12 26915151 26915471 + 1.5 NA intron (NM_018164, intron 11 of 16) L1ME4a|LINE|L1 22670 NM_018164 55726 Hs.505077 NM_018164 ENSG00000064102 INTS13 ASUN|C12orf11|GCT1|Mat89Bb|NET48|SPATA30 integrator complex subunit 13 protein-coding 266.5-3 chr14 58932415 58932938 + 1.5 NA intron (NR_110547, intron 3 of 5) L1M2a|LINE|L1 104388 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 225.5-33 chr22 28438189 28438450 + 1.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -21550 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 281.833-2 chr14 34931117 34931363 + 1.5 NA intron (NR_151701, intron 2 of 4) L1M5|LINE|L1 -8682 NR_002937 280655 Hs.639271 NR_002937 IGBP1P1 C14orf19 immunoglobulin (CD79A) binding protein 1 pseudogene 1 pseudo 160-25 chr14 46063990 46064179 + 1.5 NA promoter-TSS (NR_102701) promoter-TSS (NR_102701) -75 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 264.667-20 chr3 133237853 133238056 + 1.5 NA intron (NM_001282865, intron 2 of 3) Charlie1a|DNA|hAT-Charlie 19167 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 282.5-5 chr15 88046906 88047129 + 1.5 NA intron (NM_001007156, intron 13 of 15) intron (NM_001007156, intron 13 of 15) -100749 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 270-13 chr7 86940206 86940471 + 1.5 NA intron (NM_001291990, intron 5 of 21) intron (NM_001291990, intron 5 of 21) 25561 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 127-69 chr3 102386840 102387001 + 1.5 NA Intergenic HAL1|LINE|L1 -48095 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 183.333-14 chr11 111581707 111581850 + 1.5 NA Intergenic Intergenic -20671 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 352.333 chr14 33644158 33644639 + 1.5 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) -64539 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 406-2 chr3 124639613 124640127 + 1.5 NA intron (NM_007064, intron 4 of 26) intron (NM_007064, intron 4 of 26) 55211 NM_001322994 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 251.667-23 chr7 52789284 52789620 + 1.5 NA Intergenic Intergenic -246181 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 342.833-4 chr17 70611830 70612370 + 1.5 NA Intergenic (GT)n|Simple_repeat|Simple_repeat 442565 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 155.5-16 chr15 33947919 33948089 + 1.5 NA intron (NM_020371, intron 2 of 5) intron (NM_020371, intron 2 of 5) -20493 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 196.667-46 chr5 108974065 108974298 + 1.5 NA intron (NR_146155, intron 13 of 19) L2a|LINE|L2 49575 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 332.5-11 chr8 82007185 82007492 + 1.5 NA Intergenic Intergenic -165052 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 307.833 chr18 56910165 56910487 + 1.5 NA intron (NM_015285, intron 21 of 27) intron (NM_015285, intron 21 of 27) 161793 NR_152602 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 180.5-2 chr1 63973326 63973484 + 1.5 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 138800 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 307-2 chr14 33234976 33235227 + 1.5 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) 296222 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 221-3 chr10 55969730 55969981 + 1.5 NA Intergenic L1MEf|LINE|L1 -341913 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 308.5-5 chr14 55721918 55722298 + 1.5 NA Intergenic Intergenic -44137 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 339-8 chr8 93146905 93147242 + 1.5 NA intron (NR_161372, intron 1 of 2) L1P4|LINE|L1 19777 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 195.167-35 chr6 142179669 142179872 + 1.5 NA intron (NM_001286371, intron 4 of 6) intron (NM_001286371, intron 4 of 6) 32507 NM_016485 51534 Hs.431367 NM_016485 ENSG00000009844 VTA1 C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1 vesicle trafficking 1 protein-coding 338.167-2 chr18 7829862 7830260 + 1.5 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 262745 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 174.667-21 chr14 72820338 72820569 + 1.5 NA intron (NM_001280542, intron 1 of 10) L1ME4c|LINE|L1 72196 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 292.167-6 chr4 31738394 31738680 + 1.5 NA Intergenic Intergenic 231993 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 262.333-13 chr2 35765063 35765390 + 1.5 NA Intergenic L1MCa|LINE|L1 293821 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 245.333-5 chr13 96750945 96751123 + 1.5 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 233138 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 185.167-45 chr9 95799447 95799816 + 1.5 NA Intergenic L1MB8|LINE|L1 -76060 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 296.167-5 chr2 115600444 115600716 + 1.5 NA intron (NM_001321912, intron 6 of 25) OldhAT1|DNA|hAT-Ac 256765 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 231.334-4 chr2 217283127 217283419 + 1.5 NA TTS (NR_026597) TTS (NR_026597) 540 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 185.333-62 chr8 122024222 122024399 + 1.5 NA Intergenic Intergenic -382870 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 259.167 chr12 14310858 14311231 + 1.5 NA Intergenic L1M2|LINE|L1 -54588 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 257.333-12 chr22 34264575 34264941 + 1.5 NA Intergenic Intergenic -341870 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 245.5-28 chr8 67872735 67873027 + 1.5 NA Intergenic L1PA16|LINE|L1 -79165 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 239.833-3 chr1 218703733 218704023 + 1.5 NA intron (NR_031644, intron 4 of 6) intron (NR_031644, intron 4 of 6) 193783 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 183-25 chr2 98295991 98296195 + 1.5 NA intron (NM_001345864, intron 17 of 21) MER58B|DNA|hAT-Charlie -50062 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 277.667-12 chr5 25508698 25509004 + 1.5 NA Intergenic Intergenic 317898 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 253-14 chr3 191276080 191276300 + 1.5 NA intron (NM_198152, intron 7 of 8) intron (NM_198152, intron 7 of 8) -41585 NR_133663 106480738 NR_133663 ENSG00000233308 OSTN-AS1 - OSTN antisense RNA 1 ncRNA 130.5-48 chr2 213761176 213761394 + 1.5 NA intron (NR_047660, intron 9 of 14) L1MB1|LINE|L1 3218 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 289-13 chr6 69613713 69614347 + 1.5 NA Intergenic L1MC5|LINE|L1 182436 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 175-46 chr5 100589726 100589881 + 1.5 NA Intergenic Intergenic 54429 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 153-60 chr9 103552162 103552317 + 1.5 NA Intergenic L1M4|LINE|L1 -227206 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 148.833-32 chr2 50325101 50325242 + 1.5 NA intron (NM_001330093, intron 17 of 22) L2|LINE|L2 22583 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 204.5-20 chr20 31053890 31054127 + 1.5 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -203656 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 311 chr1 43889987 43890380 + 1.5 NA intron (NR_073018, intron 6 of 10) L1MC5|LINE|L1 -43137 NM_057090 9048 Hs.632404 NM_003976 ENSG00000117407 ARTN ART|ENOVIN|EVN|NBN artemin protein-coding 244.333-2 chr1 118796629 118796935 + 1.5 NA Intergenic L1MA7|LINE|L1 191561 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 254.166-3 chr5 85324761 85324942 + 1.5 NA Intergenic Intergenic -939971 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 338.667-3 chr2 165520425 165520794 + 1.5 NA intron (NM_001172173, intron 3 of 6) intron (NM_001172173, intron 3 of 6) 50911 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 208.5-8 chr10 30326175 30326428 + 1.5 NA intron (NM_018109, intron 5 of 8) intron (NM_018109, intron 5 of 8) 23037 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 176.167-15 chr16 8273906 8274046 + 1.5 NA Intergenic Intergenic 315862 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 353.5 chr12 3978716 3978976 + 1.5 NA Intergenic Intergenic -105398 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 184.333-17 chr16 61379118 61379331 + 1.5 NA Intergenic Intergenic -323458 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 355-9 chr4 97006809 97007062 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -359991 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 196.333-6 chr12 112515986 112516162 + 1.5 NA Intergenic L2b|LINE|L2 -59162 NM_001347952 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 370.167-4 chr2 42181909 42182339 + 1.5 NA intron (NM_001145076, intron 1 of 21) (T)n|Simple_repeat|Simple_repeat -11893 NR_110584 102723824 Hs.639826 NR_110584 LOC102723824 - uncharacterized LOC102723824 ncRNA 171.833-9 chr10 123048472 123048764 + 1.5 NA intron (NM_001609, intron 8 of 10) intron (NM_001609, intron 8 of 10) 39612 NM_001330174 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase short/branched chain protein-coding 248.833-11 chr4 114977036 114977376 + 1.5 NA exon (NM_022569, exon 3 of 14) exon (NM_022569, exon 3 of 14) 136414 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 234.667-22 chr3 1621545 1621707 + 1.5 NA Intergenic Intergenic -477177 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 189.5-2 chr1 75020539 75020693 + 1.5 NA Intergenic Intergenic -107818 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 351.167-6 chr12 115236316 115236961 + 1.5 NA Intergenic L3|LINE|CR1 -552463 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 201.333-21 chr2 52646542 52646713 + 1.5 NA Intergenic Intergenic 55988 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 485.5-2 chr2 14094385 14094945 + 1.5 NA Intergenic Intergenic 306293 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 324.667-6 chr4 104478602 104478897 + 1.5 NA intron (NR_132741, intron 2 of 2) intron (NR_132741, intron 2 of 2) -12216 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 338.833-4 chr8 125885806 125886239 + 1.5 NA Intergenic (TTGT)n|Simple_repeat|Simple_repeat 65175 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 214.667-31 chr6 130182226 130182407 + 1.5 NA intron (NM_001277185, intron 6 of 10) intron (NM_001277185, intron 6 of 10) 33569 NM_001277185 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 206-20 chr22 25173327 25173559 + 1.5 NA intron (NM_001145206, intron 5 of 10) (AATG)n|Simple_repeat|Simple_repeat -26415 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 260.167-10 chr18 22290298 22290558 + 1.5 NA Intergenic L1MEg|LINE|L1 120991 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 180.667-2 chr1 116320111 116320353 + 1.5 NA Intergenic Arthur1|DNA|hAT-Tip100 -53012 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 290.833 chr2 230777123 230777446 + 1.5 NA intron (NM_001130850, intron 2 of 8) intron (NM_001130850, intron 2 of 8) 63736 NM_001130849 51719 Hs.603930 NM_016289 ENSG00000135932 CAB39 CGI-66|MO25 calcium binding protein 39 protein-coding 145-82 chr7 54385339 54385464 + 1.5 NA Intergenic Intergenic 54704 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 258.5-14 chr2 206064472 206064665 + 1.5 NA intron (NM_017759, intron 1 of 10) MIRb|SINE|MIR 21606 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 240.667-43 chr8 81195316 81195578 + 1.5 NA Intergenic Intergenic -83379 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 390.333-4 chr7 159326560 159327060 + 1.5 NA Intergenic (CTAC)n|Simple_repeat|Simple_repeat -181853 NM_001304522 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 181.334 chr10 80716684 80716841 + 1.5 NA Intergenic Intergenic 66965 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 324-9 chr8 106448806 106449185 + 1.5 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 1071 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 398-6 chr8 83252356 83252765 + 1.5 NA Intergenic L1M4|LINE|L1 -151198 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 232.5 chr1 80886890 80887164 + 1.5 NA Intergenic Intergenic 245740 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 319-2 chr1 224285321 224285573 + 1.5 NA intron (NM_002533, intron 15 of 22) AluSg|SINE|Alu -28337 NR_031574 100313769 NR_031574 ENSG00000221406 MIR320B2 MIR320B-2|MIRN320B2|mir-320b-2 microRNA 320b-2 ncRNA 491.001 chr1 200488725 200489210 + 1.5 NA Intergenic Intergenic -78931 NM_012482 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 410.167-3 chr4 36677127 36677694 + 1.5 NA Intergenic Intergenic -35510 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 284.166 chr3 111190212 111190496 + 1.5 NA intron (NM_001243288, intron 7 of 8) intron (NM_001243288, intron 7 of 8) 118538 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 400-2 chr16 54059631 54059941 + 1.5 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) 20393 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 523-2 chr6 52172189 52172793 + 1.5 NA Intergenic AluSz|SINE|Alu -13884 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 387 chr1 104906700 104907212 + 1.5 NA Intergenic L1M5|LINE|L1 711979 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 291-13 chr4 96703569 96703782 + 1.5 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 392972 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 149.667-6 chr1 222083667 222083826 + 1.5 NA Intergenic HAL1M8|LINE|L1 -105226 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 265.833-2 chr10 110605408 110605658 + 1.5 NA TTS (NM_005445) TTS (NM_005445) 37842 NM_005445 9126 Hs.24485 NM_005445 ENSG00000108055 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 190.5-21 chr15 52706299 52706496 + 1.5 NA Intergenic L1MC4|LINE|L1 -27763 NM_019600 56204 Hs.152385 NM_019600 ENSG00000047346 FAM214A KIAA1370 family with sequence similarity 214 member A protein-coding 125.5-36 chr19 13159770 13159919 + 1.5 NA Intergenic AluJr|SINE|Alu 9433 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 262-6 chr11 82564472 82564661 + 1.5 NA Intergenic L2|LINE|L2 -160653 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 334.833-4 chr3 7522503 7522828 + 1.5 NA intron (NR_046606, intron 1 of 2) MIRc|SINE|MIR 12619 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 233.5-21 chr6 42405239 42405486 + 1.5 NA intron (NM_001297573, intron 2 of 17) MIRb|SINE|MIR 46689 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 227.333-16 chr18 67817169 67817409 + 1.5 NA intron (NR_033921, intron 1 of 4) L1MB3|LINE|L1 -2467 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 257.333-24 chr8 84865149 84865414 + 1.5 NA intron (NM_001287244, intron 5 of 7) intron (NM_001287244, intron 5 of 7) 159354 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 162.333-5 chr1 185298335 185298500 + 1.5 NA intron (NM_006469, intron 14 of 14) L2a|LINE|L2 18826 NM_006469 10625 Hs.497183 NM_006469 ENSG00000116679 IVNS1ABP ARA3|FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 371 chr1 158510291 158510618 + 1.5 NA Intergenic Intergenic 30576 NM_001004472 343406 Hs.451913 NM_001004472 ENSG00000198965 OR10R2 OR1-8|OR10R2Q olfactory receptor family 10 subfamily R member 2 protein-coding 251.667-5 chr18 36034320 36034601 + 1.5 NA intron (NM_001303413, intron 1 of 6) intron (NM_001303413, intron 1 of 6) 33099 NM_018170 55197 Hs.464912 NM_018170 ENSG00000141425 RPRD1A HsT3101|P15RS regulation of nuclear pre-mRNA domain containing 1A protein-coding 295.5-10 chr7 145904929 145905249 + 1.5 NA Intergenic (TGTC)n|Simple_repeat|Simple_repeat -869182 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 175.5-41 chr3 111777807 111777971 + 1.5 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) 45393 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 260.667-16 chr3 112737808 112738322 + 1.5 NA TTS (NR_162092) TTS (NR_162092) 976 NR_162092 113218483 NR_162092 MIR9900 - microRNA 9900 ncRNA 217.166-5 chr7 83596500 83596710 + 1.5 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 44826 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 196-51 chr5 24199529 24199730 + 1.5 NA Intergenic Intergenic 248281 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 307-4 chr21 29129238 29129471 + 1.5 NA intron (NM_001371376, intron 1 of 3) L1MC2|LINE|L1 -1290 NM_001371373 138.833-30 chr18 12277642 12277794 + 1.5 NA TTS (NM_001318383) TTS (NM_001318383) 23357 NM_001279 1149 Hs.249129 NM_001279 ENSG00000176194 CIDEA CIDE-A cell death inducing DFFA like effector a protein-coding 238.667-26 chr5 38579053 38579361 + 1.5 NA intron (NR_103554, intron 1 of 8) MLT1I|LTR|ERVL-MaLR 16198 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 259.833-8 chr4 93690285 93690488 + 1.5 NA intron (NM_001286838, intron 13 of 14) intron (NM_001286838, intron 13 of 14) -138367 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 430.5-3 chr9 32555522 32555875 + 1.5 NA intron (NM_182739, intron 2 of 2) MLT1J2-int|LTR|ERVL-MaLR -3070 NM_001195622 10210 Hs.589962 NM_005802 ENSG00000197579 TOPORS LUN|P53BP3|RP31|TP53BPL TOP1 binding arginine/serine rich protein protein-coding 227.5-34 chr8 83190641 83190883 + 1.5 NA Intergenic Intergenic -212996 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 552 chr7 72141587 72142277 + 1.5 NA intron (NM_001363460, intron 2 of 5) LTR31|LTR|ERV1 195459 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 198-61 chr8 63681468 63681855 + 1.5 NA Intergenic Intergenic -87769 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 239.5-26 chr8 123610368 123610656 + 1.5 NA Intergenic Intergenic 43289 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 237.167-10 chr2 66747840 66748162 + 1.5 NA Intergenic Intergenic -44774 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 349.667-5 chr3 178876138 178876473 + 1.5 NA Intergenic Intergenic -15900 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 329.333-8 chr6 124907797 124908162 + 1.5 NA TTS (NR_026876) TTS (NR_026876) -54566 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 156-18 chr12 14009194 14009389 + 1.5 NA Intergenic L2|LINE|L2 -28935 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 346.167-2 chr7 26829167 26829542 + 1.5 NA intron (NM_003930, intron 4 of 12) AluJb|SINE|Alu 28369 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 250.167-12 chr3 162289101 162289299 + 1.5 NA Intergenic Intergenic 792392 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 148.5-73 chr8 141890225 141890364 + 1.5 NA Intergenic MER20B|DNA|hAT-Charlie -103981 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 176.667-7 chr1 153901443 153901608 + 1.5 NA intron (NM_020699, intron 1 of 10) intron (NM_020699, intron 1 of 10) 21447 NM_020699 57459 Hs.4779 NM_020699 ENSG00000143614 GATAD2B MRD18|P66beta|p68 GATA zinc finger domain containing 2B protein-coding 197-30 chr22 28265546 28265721 + 1.5 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -194236 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 339.501-2 chr6 97912016 97912286 + 1.5 NA Intergenic L1MD|LINE|L1 -112380 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 193.333-8 chr10 72702427 72702712 + 1.5 NA intron (NM_001270680, intron 1 of 7) intron (NM_001270680, intron 1 of 7) 9950 NM_001270680 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 266-26 chrX 102620417 102620703 + 1.5 NA intron (NR_146584, intron 4 of 18) L1PREC2|LINE|L1 21045 NM_022838 64860 Hs.522729 NM_022838 ENSG00000125962 ARMCX5 GASP5 armadillo repeat containing X-linked 5 protein-coding 311.5-11 chr4 24255057 24255487 + 1.5 NA intron (NR_148982, intron 1 of 13) intron (NR_148982, intron 1 of 13) 217633 NR_148981 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 303.667-8 chr7 113277944 113278206 + 1.5 NA Intergenic Intergenic -159493 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 192.333-2 chr1 94243689 94243822 + 1.5 NA intron (NM_001328664, intron 1 of 22) L1ME1|LINE|L1 3991 NM_001328665 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 376-7 chr6 98603169 98603541 + 1.5 NA Intergenic Intergenic 228345 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 284.5-14 chr5 43311510 43311793 + 1.5 NA intron (NM_001324220, intron 1 of 10) intron (NM_001324220, intron 1 of 10) 1530 NM_001364188 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 303.666 chr19 8920927 8921263 + 1.5 NA intron (NM_024690, intron 10 of 83) (TA)n|Simple_repeat|Simple_repeat 60247 NM_024690 94025 Hs.432676 NM_024690 ENSG00000181143 MUC16 CA125 mucin 16, cell surface associated protein-coding 366.333-4 chr2 75706740 75707173 + 1.5 NA intron (NM_001201335, intron 1 of 2) intron (NM_001201335, intron 1 of 2) 3959 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 258.5-10 chr2 52082523 52082812 + 1.5 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -287981 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 267.833-18 chr8 132670124 132670341 + 1.5 NA intron (NR_135907, intron 1 of 10) L1M5|LINE|L1 5313 NM_001321965 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 218.5-31 chr8 35348483 35348703 + 1.5 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) 113118 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 216.833-19 chr4 31789762 31789970 + 1.5 NA Intergenic Intergenic -207513 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 258.167-14 chr6 69636282 69636560 + 1.5 NA Intergenic Intergenic 160045 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 292-5 chr2 47406222 47406580 + 1.5 NA intron (NM_000251, intron 1 of 15) THE1B|LTR|ERVL-MaLR 3334 NM_001258281 4436 Hs.597656 NM_000251 ENSG00000095002 MSH2 COCA1|FCC1|HNPCC|HNPCC1|LCFS2|hMSH2 mutS homolog 2 protein-coding 288-5 chr12 71322219 71322507 + 1.5 NA Intergenic L1MA10|LINE|L1 -117435 NR_110596 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 298-3 chr2 76538989 76539277 + 1.5 NA Intergenic L1MDa|LINE|L1 -446832 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 367.833-2 chr12 23917291 23918009 + 1.5 NA intron (NM_152989, intron 4 of 17) L3|LINE|CR1 32020 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 181-15 chr12 44603092 44603308 + 1.5 NA intron (NM_006159, intron 16 of 20) intron (NM_006159, intron 16 of 20) 272461 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 251.167-12 chr4 30644976 30645239 + 1.5 NA Intergenic Intergenic -75262 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 179.833-3 chr1 153623710 153623884 + 1.5 NA intron (NM_001024212, intron 2 of 2) L2|LINE|L2 3251 NM_001024213 6284 Hs.516505 NM_005979 ENSG00000189171 S100A13 - S100 calcium binding protein A13 protein-coding 336.167-2 chr15 84969756 84970018 + 1.5 NA intron (NM_001321721, intron 16 of 16) intron (NM_001321721, intron 16 of 16) -10580 NM_001243137 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 229.833-9 chr2 20006493 20006734 + 1.5 NA intron (NM_002381, intron 1 of 7) intron (NM_002381, intron 1 of 7) 6055 NM_002381 4148 Hs.656199 NM_002381 ENSG00000132031 MATN3 DIPOA|EDM5|HOA|OADIP|OS2 matrilin 3 protein-coding 271.333-14 chr4 45278614 45278902 + 1.5 NA Intergenic Intergenic -552124 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 127.333-30 chr13 31915745 31915884 + 1.5 NA intron (NR_027062, intron 1 of 3) L1M5|LINE|L1 69031 NR_027062 196549 Hs.507667 NM_145293 EEF1DP3 - eukaryotic translation elongation factor 1 delta pseudogene 3 pseudo 351.833-3 chr5 167991551 167992049 + 1.5 NA intron (NM_001368145, intron 3 of 26) intron (NM_001368145, intron 3 of 26) -174045 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 344.5 chr11 72794117 72794690 + 1.5 NA promoter-TSS (NM_006645) promoter-TSS (NM_006645) -698 NM_006645 10809 Hs.188606 NM_006645 ENSG00000214530 STARD10 CGI-52|NY-CO-28|PCTP2|SDCCAG28 StAR related lipid transfer domain containing 10 protein-coding 149.333-46 chr2 38047253 38047425 + 1.5 NA intron (NM_144713, intron 10 of 10) L1MB7|LINE|L1 -10998 NR_102712 101410544 Hs.591566 NR_102712 RMDN2-AS1 - RMDN2 antisense RNA 1 ncRNA 473.167 chr11 94257665 94258159 + 1.5 NA Intergenic L1MA6|LINE|L1 -47725 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 205-20 chr2 152073577 152073861 + 1.5 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) 25044 NM_001005746 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 273.167-4 chr11 35685393 35685635 + 1.5 NA intron (NM_017583, intron 2 of 4) intron (NM_017583, intron 2 of 4) 22739 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 471.667-2 chr14 46434228 46435153 + 1.5 NA intron (NR_102702, intron 3 of 3) MER110|LTR|ERV1 -36669 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 259-14 chr3 157428531 157429003 + 1.5 NA intron (NM_024621, intron 4 of 13) intron (NM_024621, intron 4 of 13) -8083 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 327.166 chr5 35270948 35271547 + 1.5 NA Intergenic Intergenic -40760 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 191.667-7 chr10 65910763 65910970 + 1.5 NA Intergenic Intergenic 339441 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 245.666 chr4 26572248 26572479 + 1.5 NA Intergenic L1MA6|LINE|L1 -11561 NM_001292054 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 162.833-34 chr4 159688946 159689119 + 1.5 NA intron (NR_146278, intron 2 of 2) L1MB3|LINE|L1 88752 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 234.167-5 chr14 80715490 80715697 + 1.5 NA intron (NM_152446, intron 19 of 24) L2b|LINE|L2 226145 NR_157142 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 163-62 chr8 83777738 83777971 + 1.5 NA Intergenic L1PA15|LINE|L1 374096 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 229.667 chr1 97768829 97769106 + 1.5 NA intron (NM_000110, intron 3 of 22) intron (NM_000110, intron 3 of 22) -27954 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 142.166 chr8 58510543 58510776 + 1.5 NA Intergenic L1MB7|LINE|L1 -10496 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 118.833-68 chr8 87338866 87338991 + 1.5 NA intron (NM_173538, intron 8 of 10) L1MCa|LINE|L1 472513 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 227.166-3 chr8 80062406 80062636 + 1.5 NA intron (NR_105034, intron 1 of 4) L1MB5|LINE|L1 18309 NM_001287140 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 182.834-5 chr2 137422030 137422614 + 1.5 NA intron (NM_001316349, intron 14 of 27) intron (NM_001316349, intron 14 of 27) 505610 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 185.5-44 chr6 64174288 64174530 + 1.5 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 367573 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 242-8 chr16 61934227 61934446 + 1.5 NA intron (NM_001796, intron 2 of 11) intron (NM_001796, intron 2 of 11) 102102 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 138-45 chr17 76428373 76428507 + 1.5 NA intron (NM_022066, intron 1 of 17) intron (NM_022066, intron 1 of 17) 24712 NM_022066 63893 Hs.16130 NM_022066 ENSG00000175931 UBE2O E2-230K ubiquitin conjugating enzyme E2 O protein-coding 279.333-4 chr15 79828305 79828786 + 1.5 NA Intergenic L1MEg|LINE|L1 68452 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 273.833-6 chr2 113867394 113867742 + 1.5 NA intron (NR_110174, intron 1 of 4) intron (NR_110174, intron 1 of 4) -22366 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 317.5-9 chr3 109267204 109267618 + 1.5 NA Intergenic L1M4a1|LINE|L1 49106 NM_138815 151871 Hs.351113 NM_138815 ENSG00000163530 DPPA2 CT100|ECAT15-2|PESCRG1 developmental pluripotency associated 2 protein-coding 278.5-5 chr12 78872178 78872450 + 1.5 NA intron (NM_001291901, intron 1 of 9) intron (NM_001291901, intron 1 of 9) 7540 NM_001291901 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 204.333-36 chr3 139049388 139049536 + 1.5 NA Intergenic AluJr|SINE|Alu -4570 NM_001134657 389152 Hs.531377 NM_001004315 ENSG00000233701 PRR23C - proline rich 23C protein-coding 197.833-38 chr8 123567140 123567409 + 1.5 NA Intergenic Intergenic -26068 NM_001242463 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 377.5 chr16 13384005 13384453 + 1.5 NA Intergenic Intergenic 482631 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 219-4 chr11 108001451 108001686 + 1.5 NA Intergenic Intergenic -7330 NM_003478 8065 Hs.440320 NM_003478 ENSG00000166266 CUL5 CUL-5|VACM-1|VACM1 cullin 5 protein-coding 374-4 chr2 165025607 165025990 + 1.5 NA Intergenic L1M6|LINE|L1 -70273 NM_173512 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 338.833 chr22 46152439 46152901 + 1.5 NA intron (NM_001001928, intron 2 of 7) intron (NM_001001928, intron 2 of 7) 1875 NM_001362873 5465 Hs.103110 NM_005036 ENSG00000186951 PPARA NR1C1|PPAR|PPARalpha|hPPAR peroxisome proliferator activated receptor alpha protein-coding 396.5-2 chr8 92933249 92933993 + 1.5 NA intron (NM_001171798, intron 1 of 4) intron (NM_001171798, intron 1 of 4) 31968 NM_001191036 286144 Hs.440643 NM_001171795 ENSG00000205133 TRIQK C8orf83|PRO0845|UPF0599 triple QxxK/R motif containing protein-coding 210-26 chr4 67679771 67680031 + 1.5 NA intron (NM_018227, intron 4 of 32) L1MC5|LINE|L1 21254 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 290.667-8 chr7 6394448 6394743 + 1.5 NA intron (NM_006908, intron 3 of 5) intron (NM_006908, intron 3 of 5) 20068 NM_018890 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|MRD48|Rac-1|TC-25|p21-Rac1 Rac family small GTPase 1 protein-coding 269.167-8 chr3 176584460 176584659 + 1.5 NA Intergenic L1MB7|LINE|L1 50973 NR_109968 100505547 Hs.253350 NR_109968 LINC01208 - long intergenic non-protein coding RNA 1208 ncRNA 345.5-2 chr10 15879473 15879984 + 1.5 NA Intergenic Intergenic -19195 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 175.667-64 chr7 88413239 88413412 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -106431 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 265-19 chr8 138351745 138351994 + 1.5 NA intron (NM_015912, intron 2 of 19) AluSx|SINE|Alu 145392 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 325.167-4 chr4 145316418 145316925 + 1.5 NA Intergenic Intergenic 23748 NR_147156 105377466 Hs.405641 NR_147156 ENSG00000272727 LINC02266 - long intergenic non-protein coding RNA 2266 ncRNA 230-8 chr14 25130196 25130359 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -79980 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 183-16 chr18 8840740 8840955 + 1.5 NA Intergenic Intergenic 123466 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 226.166-4 chr21 18918170 18918333 + 1.5 NA Intergenic MIR|SINE|MIR -158439 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 276.167-9 chr4 105935959 105936201 + 1.5 NA intron (NM_001184693, intron 4 of 11) intron (NM_001184693, intron 4 of 11) 40609 NM_001184691 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 276.5-8 chr2 176077139 176077555 + 1.5 NA Intergenic Intergenic 6615 NM_001080458 344191 Hs.452341 NM_001080458 ENSG00000174279 EVX2 EVX-2 even-skipped homeobox 2 protein-coding 305.667-3 chr10 22861673 22861897 + 1.5 NA Intergenic Intergenic -66239 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 227-19 chr3 88227938 88228197 + 1.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 78108 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 134.333-55 chr2 51056676 51056765 + 1.5 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 24119 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 373.5-2 chr2 112539807 112540315 + 1.5 NA 3' UTR (NM_153712, exon 7 of 7) 3' UTR (NM_153712, exon 7 of 7) -1854 NM_001282777 84172 Hs.745127 NM_019014 ENSG00000125630 POLR1B RPA135|RPA2|Rpo1-2 RNA polymerase I subunit B protein-coding 194-51 chr6 159910079 159910309 + 1.5 NA Intergenic Intergenic 19206 NM_001366704 4142 Hs.99900 NM_002377 ENSG00000130368 MAS1 MAS|MGRA MAS1 proto-oncogene, G protein-coupled receptor protein-coding 265-18 chr7 93888095 93888316 + 1.5 NA intron (NM_006528, intron 3 of 4) intron (NM_006528, intron 3 of 4) 2548 NM_001271004 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 172.5-42 chr4 42763142 42763306 + 1.5 NA Intergenic Intergenic -106119 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 284.167 chr1 163465581 163465958 + 1.5 NA Intergenic Intergenic -42578 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 252.333-17 chr3 158454068 158454315 + 1.5 NA intron (NM_001271838, intron 6 of 9) HAL1ME|LINE|L1 -72517 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 140.167-65 chr6 145127763 145127947 + 1.5 NA Intergenic Intergenic 559022 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 242.5-22 chr8 105222703 105222894 + 1.5 NA Intergenic Intergenic -95640 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 172-20 chr13 66074765 66074954 + 1.5 NA Intergenic Intergenic -108430 NR_039692 100616302 NR_039692 ENSG00000263581 MIR548X2 - microRNA 548x-2 ncRNA 220.5-2 chr1 111109045 111109326 + 1.5 NA Intergenic L1MA4|LINE|L1 -30198 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 183-47 chr5 57513373 57513555 + 1.5 NA Intergenic L1ME4b|LINE|L1 -30653 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 237.5-10 chr15 66321948 66322273 + 1.5 NA intron (NM_001323944, intron 9 of 16) intron (NM_001323944, intron 9 of 16) 25232 NR_004388 692149 NR_004388 ENSG00000252712 SCARNA14 U100 small Cajal body-specific RNA 14 ncRNA 263.5-21 chr8 63844138 63844412 + 1.5 NA Intergenic L2a|LINE|L2 74845 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 176-40 chr7 4965198 4965350 + 1.5 NA Intergenic AluSz|SINE|Alu -6087 NM_001100600 221938 Hs.558694 NM_198403 ENSG00000136297 MMD2 PAQR10 monocyte to macrophage differentiation associated 2 protein-coding 225.333-4 chr10 76863035 76863232 + 1.5 NA Intergenic L1MC4|LINE|L1 -24911 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 206-33 chr6 165683568 165683793 + 1.5 NA Intergenic Intergenic -21400 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 227.334-14 chr7 40767047 40767290 + 1.5 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 212771 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 327.167-5 chr8 121511313 121511868 + 1.5 NA Intergenic HERVL74-int|LTR|ERVL -127756 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 201-29 chr4 19091325 19091514 + 1.5 NA Intergenic Intergenic -1069544 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 337-5 chr3 3158833 3159234 + 1.5 NA intron (NM_001173482, intron 5 of 10) THE1C|LTR|ERVL-MaLR 20684 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 263.5 chr1 15531258 15531483 + 1.5 NA intron (NR_109898, intron 2 of 14) intron (NR_109898, intron 2 of 14) 4522 NM_015291 23341 Hs.655410 NM_015291 ENSG00000116138 DNAJC16 - DnaJ heat shock protein family (Hsp40) member C16 protein-coding 377.333-2 chr12 8647888 8648564 + 1.5 NA intron (NM_001297712, intron 6 of 6) intron (NM_001297712, intron 6 of 6) 14600 NR_123734 8076 Hs.512842 NM_003480 ENSG00000197614 MFAP5 AAT9|MAGP-2|MAGP2|MFAP-5|MP25 microfibril associated protein 5 protein-coding 209.333-21 chr2 226967292 226967593 + 1.5 NA intron (NM_001349069, intron 8 of 8) L1PA4|LINE|L1 131388 NM_001167608 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 271.167-11 chr20 19543025 19543295 + 1.5 NA intron (NM_020689, intron 3 of 16) MIRb|SINE|MIR -258564 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 251.667-24 chr8 121875363 121875913 + 1.5 NA Intergenic Intergenic -234198 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 184-57 chr6 153964996 153965211 + 1.5 NA Intergenic Intergenic -45393 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 282.333 chr1 196373345 196373598 + 1.5 NA intron (NM_001287820, intron 13 of 26) intron (NM_001287820, intron 13 of 26) 209010 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 276.334-4 chr7 80446529 80446749 + 1.5 NA Intergenic Intergenic 65425 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 295.333-5 chr16 73961860 73962215 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 253484 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 236.833-4 chr14 44911169 44911472 + 1.5 NA intron (NR_110050, intron 1 of 2) intron (NR_110050, intron 1 of 2) 597 NR_110050 101927418 Hs.144809 NR_110050 ENSG00000258949 LOC101927418 - uncharacterized LOC101927418 ncRNA 276.833-3 chr15 63810247 63810566 + 1.5 NA intron (NM_003922, intron 1 of 77) L1MB4|LINE|L1 23542 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 354.5 chr16 49252828 49253264 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 28792 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 342.333-2 chr11 87860321 87860724 + 1.5 NA Intergenic Intergenic -141111 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 151-6 chr1 179045889 179046116 + 1.5 NA intron (NM_001324310, intron 2 of 7) MIRb|SINE|MIR 19878 NM_001324311 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B glycosaminoglycan xylosylkinase protein-coding 430.667-4 chr6 121910600 121911288 + 1.5 NA Intergenic L1MA6|LINE|L1 475298 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 127.833-25 chr15 43860367 43860512 + 1.5 NA intron (NM_024908, intron 11 of 12) intron (NM_024908, intron 11 of 12) 17732 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1 pseudo 272.5-19 chr8 34100145 34100409 + 1.5 NA Intergenic Intergenic -500171 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 289-5 chr20 15231406 15231654 + 1.5 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 34690 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 254.667-16 chr2 77911632 77912044 + 1.5 NA intron (NR_110288, intron 1 of 3) L1M2|LINE|L1 -4096 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 200.333-30 chr5 14493925 14494240 + 1.5 NA intron (NM_007118, intron 49 of 56) Tigger1|DNA|TcMar-Tigger 30099 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 229-9 chr12 84028757 84029027 + 1.5 NA Intergenic Intergenic 883907 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 313.5-11 chr7 26104099 26104685 + 1.5 NA Intergenic Intergenic -47806 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 301-2 chr2 148220839 148221187 + 1.5 NA intron (NM_018328, intron 3 of 14) L1MA2|LINE|L1 -199409 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 235-29 chr6 143683020 143683312 + 1.5 NA intron (NM_001100165, intron 1 of 11) intron (NM_001100165, intron 1 of 11) 5201 NM_001100164 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 166-37 chr21 29801430 29801605 + 1.5 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 53342 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 218.333-32 chr7 34590116 34590569 + 1.5 NA intron (NR_033664, intron 2 of 4) intron (NR_033664, intron 2 of 4) -67876 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 253.5-7 chr11 81063233 81063560 + 1.5 NA Intergenic Intergenic -300593 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 412.167 chr11 3992522 3992878 + 1.5 NA intron (NM_001277962, intron 2 of 12) L1M4|LINE|L1 -101985 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 150.5-26 chr14 70337683 70337797 + 1.5 NA intron (NM_001202549, intron 3 of 4) L1MEg|LINE|L1 21943 NM_016468 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 551.166 chr8 106146573 106147219 + 1.5 NA Intergenic Intergenic -86393 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 171.5-48 chr5 3174924 3175224 + 1.5 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -2761 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 200.167-39 chr5 23944906 23945194 + 1.5 NA Intergenic L1MC3|LINE|L1 -6298 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 277.667-13 chr5 33666712 33667057 + 1.5 NA intron (NM_001324512, intron 5 of 21) intron (NM_001324512, intron 5 of 21) 225106 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 223-12 chr18 3009800 3010171 + 1.5 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) 1962 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 260.667-17 chr3 119143589 119143899 + 1.5 NA intron (NM_152538, intron 1 of 8) L1M4|LINE|L1 2276 NM_001353322 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 128.667-103 chr6 101586659 101587084 + 1.5 NA intron (NM_001166247, intron 1 of 16) AluSz6|SINE|Alu 187886 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 271-4 chr2 69101998 69102227 + 1.5 NA intron (NM_032208, intron 9 of 17) intron (NM_032208, intron 9 of 17) -1570 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 121.167-73 chr6 56434005 56434158 + 1.5 NA Intergenic Intergenic -39953 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 162.5-70 chr7 69417615 69417768 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR 179933 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 227.333-35 chr5 58791859 58792186 + 1.5 NA intron (NM_138453, intron 3 of 4) MIR1_Amn|SINE|MIR 207876 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 204.667-41 chr6 166156800 166157102 + 1.5 NA TTS (NM_003181) TTS (NM_003181) 10900 NM_001366285 6862 Hs.389457 NM_003181 ENSG00000164458 TBXT SAVA|T|TFT T-box transcription factor T protein-coding 276.333-12 chr22 29086191 29086569 + 1.5 NA intron (NM_001039570, intron 1 of 8) intron (NM_001039570, intron 1 of 8) 13345 NM_001039570 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 ECTD13|KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding 380.001 chr12 65146713 65147250 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -22602 NM_001167614 23592 Hs.744150 NM_014319 ENSG00000174106 LEMD3 MAN1 LEM domain containing 3 protein-coding 484 chr16 60854760 60855243 + 1.5 NA Intergenic MER33|DNA|hAT-Charlie 200765 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 256.333-12 chr18 64638971 64639287 + 1.5 NA Intergenic MER58B|DNA|hAT-Charlie -379074 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 286.333-13 chr8 125829522 125829801 + 1.5 NA Intergenic MLT2B1|LTR|ERVL 121536 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 298.5-5 chr12 24756789 24757017 + 1.5 NA Intergenic Intergenic 145319 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 313.833-4 chr19 36722186 36722412 + 1.5 NA TTS (NM_001300979) TTS (NM_001300979) 18618 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 190-45 chr4 45221712 45222029 + 1.5 NA Intergenic Intergenic -495236 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 535.168 chr9 72183993 72184727 + 1.5 NA intron (NM_001351571, intron 1 of 13) L1MC1|LINE|L1 34920 NM_001242506 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 138-85 chr5 82686771 82686887 + 1.5 NA Intergenic Intergenic -153326 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 189.5-31 chr2 184222054 184222307 + 1.5 NA Intergenic MER73|LTR|ERVL -156795 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 264.333-2 chr10 74245910 74246416 + 1.5 NA intron (NM_001369124, intron 3 of 9) Charlie1b|DNA|hAT-Charlie 69400 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 133.667-24 chr14 52635558 52635663 + 1.5 NA non-coding (NR_148417, exon 8 of 8) non-coding (NR_148417, exon 8 of 8) 59948 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 371.333 chr2 193730776 193731206 + 1.5 NA Intergenic Intergenic -613278 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 204.5-19 chr2 200395503 200395714 + 1.5 NA intron (NM_001100423, intron 3 of 12) MIRb|SINE|MIR 86658 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 332.667-2 chr2 40079396 40079761 + 1.5 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 161944 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 339.667-4 chr3 81249556 81249905 + 1.5 NA Intergenic MER58A|DNA|hAT-Charlie 255862 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 233.5-17 chr4 82764343 82764622 + 1.5 NA intron (NM_001037582, intron 1 of 4) L1MEc|LINE|L1 -11052 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 220.5-21 chr2 123049119 123049324 + 1.5 NA Intergenic Intergenic 24260 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 193-13 chr12 20306724 20306886 + 1.5 NA Intergenic L1M2a|LINE|L1 -62440 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 264 chr1 203813152 203813384 + 1.5 NA intron (NM_014827, intron 4 of 19) AluSq|SINE|Alu 15745 NM_001174108 100381270 NM_001174108 ENSG00000257315 ZBED6 MGR zinc finger BED-type containing 6 protein-coding 298.167-2 chr10 74793366 74793740 + 1.5 NA Intergenic AluJb|SINE|Alu -31702 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 417-4 chr21 34043519 34043996 + 1.5 NA Intergenic L1MB7|LINE|L1 -29821 NM_032476 64968 Hs.302742 NM_032476 ENSG00000243927 MRPS6 C21orf101|MRP-S6|RPMS6|S6mt mitochondrial ribosomal protein S6 protein-coding 314-6 chr2 79228829 79229166 + 1.5 NA Intergenic L1PA16|LINE|L1 -69244 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 253-5 chr11 110890098 110890356 + 1.5 NA Intergenic L2|LINE|L2 -177038 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 280.667 chr1 102484426 102484751 + 1.5 NA Intergenic MER77|LTR|ERVL -487354 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 139.167-50 chr22 33716122 33716240 + 1.5 NA intron (NM_133642, intron 2 of 14) MER53|DNA|hAT -8805 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 308.834-3 chr8 84284879 84285214 + 1.5 NA intron (NM_001354320, intron 2 of 9) A-rich|Low_complexity|Low_complexity 100380 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 365.501-2 chr2 212537190 212537644 + 1.5 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 1211 NM_001042599 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 332.5-4 chr18 7066523 7066910 + 1.5 NA intron (NM_005559, intron 3 of 62) intron (NM_005559, intron 3 of 62) 51081 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 219-26 chr7 7838562 7838828 + 1.5 NA intron (NM_001302350, intron 4 of 4) L1ME3E|LINE|L1 -120088 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 197.167-55 chr7 114957072 114957221 + 1.5 NA intron (NM_001166345, intron 3 of 4) intron (NM_001166345, intron 3 of 4) 34992 NM_001166345 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 282.667-5 chr11 74186074 74186267 + 1.5 NA intron (NM_001271593, intron 1 of 13) intron (NM_001271593, intron 1 of 13) 14881 NM_001271593 51400 Hs.503251 NM_016147 ENSG00000214517 PPME1 ABDH19|PME-1 protein phosphatase methylesterase 1 protein-coding 232-36 chr8 131905269 131905495 + 1.5 NA intron (NM_001323555, intron 1 of 22) intron (NM_001323555, intron 1 of 22) 1289 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 412.5-2 chr2 66199784 66200431 + 1.5 NA Intergenic Intergenic 158221 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 262.667-20 chr2 59395807 59396032 + 1.5 NA Intergenic Intergenic 178211 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 242.5-18 chr6 81426737 81427072 + 1.5 NA Intergenic Intergenic 325777 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 252-16 chr8 118976354 118976563 + 1.5 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 24195 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 474-2 chr11 39671597 39671934 + 1.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR 621365 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 323.667-9 chr7 9016027 9016242 + 1.5 NA Intergenic L1M4|LINE|L1 582525 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 248.834-2 chr1 108773096 108773392 + 1.5 NA intron (NM_007269, intron 7 of 18) intron (NM_007269, intron 7 of 18) 26570 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 243.5-10 chr15 57054162 57054514 + 1.5 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 134893 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 246.5-18 chr5 94473845 94474075 + 1.5 NA intron (NM_001145678, intron 7 of 20) intron (NM_001145678, intron 7 of 20) 144644 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 180.833-14 chr15 38379807 38379947 + 1.5 NA Intergenic MER91A|DNA|hAT-Tip100 -74250 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 259.167-13 chr4 121039236 121039519 + 1.5 NA intron (NM_024574, intron 3 of 3) intron (NM_024574, intron 3 of 3) 33158 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 279-4 chr12 116262645 116262900 + 1.5 NA intron (NM_015335, intron 1 of 30) intron (NM_015335, intron 1 of 30) 14414 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 316.5-3 chr17_GL000205v2_random 42527 42825 + 1.5 NA Intergenic HERVL66-int|LTR|ERVL 15290 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 221.5-30 chr6 49467809 49468089 + 1.5 NA intron (NM_018132, intron 1 of 8) intron (NM_018132, intron 1 of 8) 4579 NM_018132 55166 Hs.88663 NM_018132 ENSG00000031691 CENPQ C6orf139|CENP-Q centromere protein Q protein-coding 422-3 chr3 29096669 29097271 + 1.5 NA Intergenic L1PB3|LINE|L1 183969 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 254-16 chr3 95781083 95781526 + 1.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -98111 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 225-32 chr6 142645016 142645174 + 1.5 NA Intergenic FordPrefect|DNA|hAT-Tip100 -7206 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 421.5 chr3 102639793 102640211 + 1.5 NA Intergenic Tigger4a|DNA|TcMar-Tigger 204987 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 153.667 chr1 8700867 8701024 + 1.5 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 116695 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 261.5 chr10 55665489 55665825 + 1.5 NA Intergenic MER44B|DNA|TcMar-Tigger -37715 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 150.833-12 chr15 61301382 61301739 + 1.5 NA Intergenic Intergenic -72258 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 215.167-29 chr7 118423047 118423553 + 1.5 NA Intergenic Charlie23a|DNA|hAT-Charlie 198596 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 349-6 chr4 85560012 85560456 + 1.5 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 85084 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 208-2 chr10 31498969 31499400 + 1.5 NA intron (NM_001323658, intron 3 of 8) Charlie2a|DNA|hAT-Charlie -99429 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 257.833-5 chr18 21696331 21696533 + 1.5 NA intron (NM_138340, intron 3 of 8) AluY|SINE|Alu 8342 NM_138340 171586 Hs.397978 NM_138340 ENSG00000158201 ABHD3 LABH3 abhydrolase domain containing 3 protein-coding 212-26 chr4 30289162 30289401 + 1.5 NA Intergenic Intergenic -431088 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 375.667-5 chr2 112119523 112120070 + 1.5 NA TTS (NM_032824) TTS (NM_032824) -18589 NM_153214 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 224.333-25 chr4 59683302 59683577 + 1.5 NA Intergenic L1MA9|LINE|L1 669866 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 215-34 chr6 6335389 6335662 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -14834 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 195.833 chr1 92105858 92106102 + 1.5 NA intron (NM_183242, intron 3 of 8) MER57D|LTR|ERV1 25635 NM_183242 284697 Hs.676102 NM_183242 ENSG00000189195 BTBD8 - BTB domain containing 8 protein-coding 317.5-5 chr16 63947418 63947760 + 1.5 NA Intergenic Intergenic 1174474 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 289.333-12 chr5 162314448 162314735 + 1.5 NA Intergenic L1ME1|LINE|L1 246949 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 393-6 chr8 73633090 73633546 + 1.5 NA intron (NM_001164383, intron 1 of 9) MIR|SINE|MIR 113522 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 314.5-2 chr1 191894076 191894452 + 1.5 NA Intergenic MIR1_Amn|SINE|MIR -264198 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 215.333-46 chr7 9452096 9452384 + 1.5 NA Intergenic L1M5|LINE|L1 -182030 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 363.667-7 chr8 134630765 134631195 + 1.5 NA intron (NM_020863, intron 3 of 15) intron (NM_020863, intron 3 of 15) 32909 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 272.833-6 chr2 52966801 52967077 + 1.5 NA Intergenic Intergenic -264324 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 184.833-11 chr18 26078226 26078396 + 1.5 NA intron (NM_001007559, intron 2 of 10) intron (NM_001007559, intron 2 of 10) 12302 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 258.333-24 chr4 76473271 76473515 + 1.5 NA intron (NM_020859, intron 1 of 10) AluJr4|SINE|Alu 38164 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 207.834-10 chr7 3858503 3858722 + 1.5 NA intron (NM_152744, intron 5 of 44) L1MDa|LINE|L1 -271073 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 301.167-3 chr4 34111516 34111791 + 1.5 NA Intergenic Intergenic -71760 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 318.833 chr1 222172500 222172922 + 1.5 NA Intergenic L1PA16|LINE|L1 -194191 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 293.667 chr1 61890194 61890431 + 1.5 NA intron (NM_001350145, intron 22 of 43) AluJr4|SINE|Alu 44237 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 203-33 chr4 175885779 175885976 + 1.5 NA intron (NR_048571, intron 1 of 5) intron (NR_048571, intron 1 of 5) -72763 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 258.667-18 chr5 10366906 10367417 + 1.5 NA intron (NM_001270661, intron 1 of 22) L1MC3|LINE|L1 13466 NM_001270660 10299 Hs.432862 NM_005885 ENSG00000145495 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane associated ring-CH-type finger 6 protein-coding 174.5-28 chr4 32433687 32433869 + 1.5 NA Intergenic L1PA13|LINE|L1 82740 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 362.834-2 chr3 109184602 109184930 + 1.5 NA non-coding (NR_026767, exon 3 of 3) non-coding (NR_026767, exon 3 of 3) 6601 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 236-27 chr8 61736514 61736799 + 1.5 NA Intergenic MER49|LTR|ERV1 21868 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 mir-4470 microRNA 4470 ncRNA 345-3 chr7 8118135 8118515 + 1.5 NA intron (NR_146928, intron 13 of 14) intron (NR_146928, intron 13 of 14) 143727 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 382.333-2 chr13 67709838 67710312 + 1.5 NA Intergenic Intergenic 337688 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 235.833-2 chr1 86007649 86007869 + 1.5 NA intron (NR_146340, intron 20 of 60) L1MC1|LINE|L1 148712 NM_001349955 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 131.167-17 chr12 21452790 21452962 + 1.5 NA intron (NM_001350912, intron 5 of 11) intron (NM_001350912, intron 5 of 11) 14961 NM_001350912 79912 Hs.709545 NM_024854 ENSG00000121350 PYROXD1 MFM8 pyridine nucleotide-disulphide oxidoreductase domain 1 protein-coding 285.333-3 chr10 27767578 27767831 + 1.5 NA TTS (NR_121652) TTS (NR_121652) -21885 NM_173576 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 328-10 chr5 81785551 81785905 + 1.5 NA Intergenic Intergenic -34475 NM_001256736 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 423.834-3 chr9 37831498 37832020 + 1.5 NA intron (NM_001286810, intron 2 of 6) intron (NM_001286810, intron 2 of 6) 30962 NM_024345 79269 Hs.118394 NM_024345 ENSG00000122741 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 330-10 chr9 106620439 106620793 + 1.5 NA intron (NR_104145, intron 1 of 6) intron (NR_104145, intron 1 of 6) 4558 NR_104145 100996590 Hs.147110 NR_104145 ENSG00000234323 LINC01505 - long intergenic non-protein coding RNA 1505 ncRNA 148-55 chr3 192546378 192546549 + 1.5 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 31441 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 168-76 chr7 105063782 105063996 + 1.5 NA intron (NM_182931, intron 5 of 26) intron (NM_182931, intron 5 of 26) 49684 NM_182931 55904 Hs.592262 NM_018682 ENSG00000005483 KMT2E HDCMC04P|MLL5|NKp44L lysine methyltransferase 2E protein-coding 340.834-2 chr3 24439522 24439870 + 1.5 NA intron (NM_001354709, intron 1 of 10) L3|LINE|CR1 -54391 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 463.833 chr10 108111658 108112092 + 1.5 NA Intergenic MER66-int|LTR|ERV1 -42582 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 306.5-7 chr8 103399194 103399575 + 1.5 NA non-coding (NR_102337, exon 6 of 6) non-coding (NR_102337, exon 6 of 6) 15723 NM_030780 81034 Hs.532265 NM_030780 ENSG00000164933 SLC25A32 MFT|MFTC|RREI solute carrier family 25 member 32 protein-coding 300.333-4 chr11 78631634 78632016 + 1.5 NA Intergenic L1M1|LINE|L1 -56961 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 256.5-38 chr8 121893696 121893930 + 1.5 NA Intergenic L2c|LINE|L2 -252373 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 246.5-12 chr18 2151038 2151455 + 1.5 NA Intergenic Intergenic 420259 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 273.167-5 chr12 61631679 61632012 + 1.5 NA Intergenic L2c|LINE|L2 560994 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 227.333-10 chr11 36164428 36164667 + 1.5 NA intron (NM_001304263, intron 3 of 4) intron (NM_001304263, intron 3 of 4) -86646 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 244.667-22 chr6 145280220 145280447 + 1.5 NA Intergenic Intergenic 406544 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 236.5-2 chr1 164746793 164746982 + 1.5 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 27754 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 262.834-2 chr4 34318186 34318515 + 1.5 NA Intergenic Intergenic -48603 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 249.167-4 chr12 3915514 3915768 + 1.5 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -42193 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 155.167-32 chr4 30790325 30790471 + 1.5 NA intron (NM_032457, intron 1 of 2) MIR|SINE|MIR 70029 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 223.5-22 chr4 94751205 94751515 + 1.5 NA intron (NR_121610, intron 2 of 2) intron (NR_121610, intron 2 of 2) 6173 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 319.5-8 chr9 70355461 70355831 + 1.5 NA TTS (NM_015110) TTS (NM_015110) 59011 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 362.833-2 chr2 31983614 31984002 + 1.5 NA intron (NR_126034, intron 1 of 6) L1MC3|LINE|L1 26856 NM_001137602 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 256.833-5 chr15 65478716 65479075 + 1.5 NA non-coding (NR_135486, exon 12 of 22) non-coding (NR_135486, exon 12 of 22) 38379 NM_197960 54878 Hs.458609 NM_017743 ENSG00000074603 DPP8 DP8|DPRP-1|DPRP1|MST097|MSTP097|MSTP135|MSTP141 dipeptidyl peptidase 8 protein-coding 202-35 chr5 82568972 82569144 + 1.5 NA Intergenic L1PREC2|LINE|L1 -271097 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 237-22 chr8 82480018 82480321 + 1.5 NA Intergenic Intergenic -431935 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 273.833 chr1 62507083 62507430 + 1.5 NA intron (NM_001367561, intron 35 of 49) intron (NM_001367561, intron 35 of 49) 70207 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 312.667 chr1 197791797 197792136 + 1.5 NA Intergenic L1M3e|LINE|L1 -16486 NR_125340 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 143.333-88 chr8 120295863 120295984 + 1.5 NA intron (NM_021110, intron 34 of 47) MIR|SINE|MIR 149227 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 240.333-6 chr11 81101868 81102425 + 1.5 NA Intergenic Intergenic -339343 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 488.333-2 chr8 107347991 107348868 + 1.5 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -11914 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 357-2 chr3 33862567 33863101 + 1.5 NA intron (NM_001162429, intron 15 of 17) intron (NM_001162429, intron 15 of 17) 64204 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 374.667-2 chr20 55186753 55187550 + 1.5 NA Intergenic Intergenic -235892 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 202.333-45 chr7 92145919 92146172 + 1.5 NA intron (NM_001161528, intron 4 of 4) intron (NM_001161528, intron 4 of 4) -11300 NM_001146152 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 217.167-12 chr4 107787190 107787420 + 1.5 NA Intergenic L2a|LINE|L2 -37260 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 388.333-2 chr2 124294189 124294648 + 1.5 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 269131 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 265.833-7 chr2 68978112 68978483 + 1.5 NA intron (NM_019617, intron 3 of 5) GA-rich|Low_complexity|Low_complexity 3724 NM_019617 56287 Hs.69319 NM_019617 ENSG00000169605 GKN1 AMP18|BRICD1|CA11|FOV|foveolin gastrokine 1 protein-coding 155.5-7 chr11 73017814 73018001 + 1.5 NA intron (NM_014824, intron 3 of 19) L1MC5|LINE|L1 124411 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 357 chr14 59461493 59461770 + 1.5 NA 3' UTR (NM_022571, exon 1 of 1) 3' UTR (NM_022571, exon 1 of 1) 3749 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 402.833 chr10 33825469 33826063 + 1.5 NA Intergenic Intergenic -53086 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 224-21 chr2 46630551 46630835 + 1.5 NA TTS (NM_014171) TTS (NM_014171) 13478 NM_014171 9419 Hs.133998 NM_014171 ENSG00000119878 CRIPT HSPC139|SSMDF CXXC repeat containing interactor of PDZ3 domain protein-coding 253.5-5 chr10 32575098 32575334 + 1.5 NA TTS (NM_001026383) TTS (NM_001026383) 129076 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 116-40 chr19 28808953 28809055 + 1.5 NA Intergenic L1MC|LINE|L1 -81310 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 238.5-30 chr7 13977366 13977614 + 1.5 NA intron (NM_001370556, intron 3 of 11) intron (NM_001370556, intron 3 of 11) 9024 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 348.001-2 chr16 50483418 50483687 + 1.5 NA Intergenic Charlie1b|DNA|hAT-Charlie -64844 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 233.5-5 chr11 97551177 97551365 + 1.5 NA Intergenic Intergenic 1042846 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 292.666-2 chr3 81511555 81511802 + 1.5 NA intron (NM_000158, intron 14 of 15) L1PA16|LINE|L1 249967 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 260-5 chr10 16120280 16120539 + 1.5 NA Intergenic MER1A|DNA|hAT-Charlie -259876 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 413-2 chr3 163647098 163647658 + 1.5 NA Intergenic Intergenic -344077 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 130-53 chr2 108219518 108219617 + 1.5 NA Intergenic Intergenic -1726 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 252.834-2 chr12 95302259 95302569 + 1.5 NA non-coding (NR_147923, exon 12 of 12) non-coding (NR_147923, exon 12 of 12) -6006 NR_029895 442903 NR_029895 ENSG00000199172 MIR331 MIRN331|hsa-mir-331|mir-331 microRNA 331 ncRNA 260.333-12 chr2 194557493 194557826 + 1.5 NA Intergenic Intergenic -172936 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 134.167-89 chrX 9093350 9093482 + 1.5 NA Intergenic MER84|LTR|ERV1 -59289 NM_205849 171483 Hs.733351 NM_173696 ENSG00000177138 FAM9B TEX39B family with sequence similarity 9 member B protein-coding 432.167 chr7 122245348 122245676 + 1.5 NA Intergenic Intergenic -58146 NR_036484 154860 Hs.664204 NR_036484 ENSG00000230316 FEZF1-AS1 - FEZF1 antisense RNA 1 ncRNA 314.5-13 chr7 116059605 116059984 + 1.5 NA Intergenic L1ME1|LINE|L1 -29031 NM_012252 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 172.333-36 chr2 99116073 99116479 + 1.5 NA intron (NM_001349012, intron 2 of 18) intron (NM_001349012, intron 2 of 18) 24904 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 462.999 chr9 13951576 13951921 + 1.5 NA Intergenic Intergenic 23777 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 259.333-5 chr12 9022716 9023075 + 1.5 NA Intergenic MER21B|LTR|ERVL 33270 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 242-15 chr4 61461568 61461754 + 1.5 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 259489 NM_001371342 207-10 chr13 62091424 62091659 + 1.5 NA Intergenic Intergenic -61993 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 152.5-56 chr5 126208698 126208840 + 1.5 NA Intergenic LTR78B|LTR|ERV1 29192 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 176-26 chr3 123190999 123191342 + 1.5 NA Intergenic L1ME4a|LINE|L1 -10773 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 126-41 chr2 75066833 75066956 + 1.5 NA intron (NM_015727, intron 2 of 3) intron (NM_015727, intron 2 of 3) -23918 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 304.833 chr11 108598013 108598262 + 1.5 NA Intergenic L2a|LINE|L2 -4369 NM_015065 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 282.5-8 chr5 42523080 42523462 + 1.5 NA intron (NM_001242400, intron 2 of 10) intron (NM_001242400, intron 2 of 10) -24772 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 263.833-4 chr10 113882536 113882777 + 1.5 NA intron (NM_198514, intron 4 of 10) L1MB8|LINE|L1 27995 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 256-7 chr2 56360676 56360903 + 1.5 NA intron (NM_001348515, intron 3 of 3) intron (NM_001348515, intron 3 of 3) -175019 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 210.5-17 chr16 75750189 75750349 + 1.5 NA Intergenic Intergenic -23779 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 214-27 chr22 43136091 43136383 + 1.5 NA intron (NR_046423, intron 2 of 2) AluJb|SINE|Alu 7160 NR_046423 27349 Hs.349111 NM_014507 ENSG00000100294 MCAT FASN2C|MCT|MCT1|MT|NET62|fabD malonyl-CoA-acyl carrier protein transacylase protein-coding 340.167-8 chr5 15633069 15633337 + 1.5 NA intron (NM_001278317, intron 2 of 3) L1ME4a|LINE|L1 -18201 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 216-18 chr2 190683461 190683644 + 1.5 NA intron (NM_001321315, intron 3 of 5) intron (NM_001321315, intron 3 of 5) 24394 NM_001321315 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 132.333-59 chr2 117441964 117442150 + 1.5 NA Intergenic L2c|LINE|L2 -372634 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 446.833 chr2 26703421 26703816 + 1.5 NA intron (NM_002246, intron 1 of 1) intron (NM_002246, intron 1 of 1) 10896 NM_002246 3777 Hs.24040 NM_002246 ENSG00000171303 KCNK3 K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1 potassium two pore domain channel subfamily K member 3 protein-coding 490.833 chr6 88009992 88010458 + 1.5 NA Intergenic Intergenic -37616 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 280.5-5 chr10 100253295 100253541 + 1.5 NA intron (NM_001303404, intron 6 of 12) intron (NM_001303404, intron 6 of 12) 14220 NM_001303404 55280 Hs.215502 NM_018294 ENSG00000095485 CWF19L1 C19L1|SCAR17|hDrn1 CWF19 like cell cycle control factor 1 protein-coding 303.5-8 chr7 50266001 50266339 + 1.5 NA Intergenic Intergenic -37894 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 226.667-26 chr5 37829972 37830184 + 1.5 NA intron (NM_001278098, intron 1 of 2) intron (NM_001278098, intron 1 of 2) 4744 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 334-8 chr6 143929260 143929491 + 1.5 NA intron (NM_001013623, intron 6 of 7) L1PB4|LINE|L1 32035 NM_001317157 5325 Hs.743225 NM_002656 ENSG00000118495 PLAGL1 LOT1|ZAC|ZAC1 PLAG1 like zinc finger 1 protein-coding 276.667-9 chr8 138732856 138733247 + 1.5 NA intron (NM_152888, intron 23 of 64) intron (NM_152888, intron 23 of 64) 180990 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 205.166-2 chr4 78499000 78499164 + 1.5 NA intron (NM_025074, intron 60 of 73) intron (NM_025074, intron 60 of 73) -52688 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 193.833-18 chr16 60787363 60787653 + 1.5 NA Intergenic Intergenic 268258 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 252-21 chr9 15642724 15642918 + 1.5 NA intron (NM_001355547, intron 6 of 24) intron (NM_001355547, intron 6 of 24) 78843 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 232.5-24 chr4 32649535 32649736 + 1.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR 298597 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 274.333-14 chr8 91359508 91359788 + 1.5 NA intron (NM_134266, intron 11 of 18) intron (NM_134266, intron 11 of 18) 110329 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 345.5-8 chr8 83046603 83046927 + 1.5 NA Intergenic Intergenic 134661 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 191.5-36 chr3 159129660 159129827 + 1.5 NA intron (NM_001197113, intron 1 of 10) intron (NM_001197113, intron 1 of 10) 60424 NM_001042706 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 427-2 chr14 68842371 68842829 + 1.5 NA Intergenic MER5A1|DNA|hAT-Charlie -46357 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 400-6 chr6 21774224 21774599 + 1.5 NA intron (NR_015410, intron 2 of 11) AluSc5|SINE|Alu 107998 NR_015410 401237 Hs.712707 NR_015410 CASC15 CANT|LINC00340|lnc-SOX4-1 cancer susceptibility 15 ncRNA 230-3 chr11 98427069 98427328 + 1.5 NA Intergenic L1MA8|LINE|L1 -593751 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 150.5-9 chr10 80391211 80391367 + 1.5 NA Intergenic Intergenic -16540 NM_001243779 84293 Hs.500333 NM_032333 ENSG00000122378 PRXL2A Adrx|C10orf58|FAM213A|PAMM peroxiredoxin like 2A protein-coding 221.333-16 chr20 55012384 55012607 + 1.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR -410548 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 384.834-2 chr8 129913547 129913980 + 1.5 NA intron (NM_001353256, intron 2 of 13) MIR|SINE|MIR 26048 NM_001353313 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 213.333-3 chr1 163974382 163974717 + 1.5 NA Intergenic Charlie25|DNA|hAT-Charlie -551358 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 170.5-9 chr10 73133462 73133609 + 1.5 NA TTS (NM_001135752) TTS (NM_001135752) -7328 NR_145776 109617000 NR_145776 ENSG00000221164 SNORA11F - small nucleolar RNA, H/ACA box 11F snoRNA 149.5-54 chr5 119819118 119819270 + 1.5 NA Intergenic Intergenic 189635 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 196-59 chr8 67234735 67235031 + 1.5 NA intron (NM_006421, intron 22 of 38) L2b|LINE|L2 108898 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 377.667 chr18 6636270 6636719 + 1.5 NA Intergenic Intergenic -93222 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 202.167 chr1 173778973 173779142 + 1.5 NA intron (NM_014458, intron 10 of 11) L1M1|LINE|L1 45075 NM_001171182 91687 Hs.531856 NM_033319 ENSG00000120334 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 324-3 chr13 67110565 67110821 + 1.5 NA intron (NM_001318372, intron 2 of 4) MIRb|SINE|MIR 119643 NM_020403 5101 Hs.654709 NM_020403 ENSG00000184226 PCDH9 - protocadherin 9 protein-coding 240-22 chr20 3313306 3313495 + 1.5 NA intron (NM_001009984, intron 20 of 36) intron (NM_001009984, intron 20 of 36) -74210 NM_001174089 83959 Hs.105607 NM_032034 ENSG00000088836 SLC4A11 BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2 solute carrier family 4 member 11 protein-coding 254.667-31 chr8 89767853 89768269 + 1.5 NA intron (NM_003821, intron 3 of 10) L3|LINE|CR1 10245 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 249.5-15 chr2 222702507 222702721 + 1.5 NA intron (NM_058165, intron 5 of 5) L1MC4|LINE|L1 30956 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 282-2 chr1 191508428 191508802 + 1.5 NA Intergenic MLT2B4|LTR|ERVL -280117 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 408.833-2 chr5 26176841 26177283 + 1.5 NA Intergenic Intergenic 861524 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 229.333-28 chr5 29346351 29346912 + 1.5 NA Intergenic Intergenic 49345 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 209.5-21 chr2 100292680 100293018 + 1.5 NA intron (NM_198461, intron 9 of 11) L1ME2|LINE|L1 29884 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 188-42 chr4 176266037 176266193 + 1.5 NA intron (NM_080874, intron 1 of 6) intron (NM_080874, intron 1 of 6) 3107 NM_080874 140458 Hs.591712 NM_080874 ENSG00000164122 ASB5 ASB-5 ankyrin repeat and SOCS box containing 5 protein-coding 193.833-25 chr3 12402839 12403097 + 1.5 NA intron (NM_001354669, intron 5 of 6) MER2|DNA|TcMar-Tigger 51466 NM_015869 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 165-23 chr18 10815083 10815339 + 1.5 NA intron (NM_022068, intron 7 of 51) intron (NM_022068, intron 7 of 51) -55562 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 212.167-22 chr5 101520256 101520556 + 1.5 NA Intergenic LOR1a|LTR|ERV1 -617124 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 209.5-32 chr5 36306162 36306451 + 1.5 NA Intergenic Intergenic -4404 NM_001323276 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 228.667-25 chr20 15868975 15869197 + 1.5 NA intron (NM_001351663, intron 9 of 17) AluJo|SINE|Alu 54228 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 304-6 chr5 44743688 44744014 + 1.5 NA TTS (NR_109862) TTS (NR_109862) 64942 NR_109862 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 256.333-8 chr12 15381017 15381261 + 1.5 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 58631 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 136.833-3 chr1 188088438 188088615 + 1.5 NA Intergenic Intergenic 644898 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 281.333-7 chr2 134339144 134339512 + 1.5 NA intron (NM_001371457, intron 7 of 16) L1MC5|LINE|L1 85256 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 387.167 chr7 93333941 93334269 + 1.5 NA intron (NM_001257998, intron 22 of 28) intron (NM_001257998, intron 22 of 28) 101739 NM_017667 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50 subunit of EARP/GARPII complex protein-coding 326.167-7 chr2 41691762 41692225 + 1.5 NA Intergenic Intergenic -185562 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 236.167-19 chrX 84046753 84046970 + 1.5 NA Intergenic L1PA15-16|LINE|L1 141074 NM_001330512 27330 Hs.234478 NM_014496 ENSG00000072133 RPS6KA6 PP90RSK4|RSK-4|RSK4|S6K-alpha-6|p90RSK6 ribosomal protein S6 kinase A6 protein-coding 310.166 chr1 220041983 220042320 + 1.5 NA intron (NM_004446, intron 1 of 31) AluSc8|SINE|Alu 4354 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 517.167-3 chr8 132802892 132803695 + 1.5 NA intron (NM_016018, intron 6 of 20) intron (NM_016018, intron 6 of 20) 27905 NM_001277196 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 419.333 chr10 8993945 8994277 + 1.5 NA Intergenic Tigger17a|DNA|TcMar-Tigger 96122 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 290.167-14 chr7 122926178 122926552 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL -39606 NM_001167940 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 279-12 chr4 77954939 77955192 + 1.5 NA Intergenic MIRb|SINE|MIR 92235 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 210.667-42 chr4 175700895 175701035 + 1.5 NA intron (NM_201592, intron 2 of 6) intron (NM_201592, intron 2 of 6) 86711 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 258-7 chr7 112143143 112143425 + 1.5 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 63115 NM_014705 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 251.833-4 chr18 12701203 12701397 + 1.5 NA intron (NM_001271989, intron 1 of 10) intron (NM_001271989, intron 1 of 10) 1423 NM_024899 79959 Hs.236940 NM_024899 ENSG00000101624 CEP76 C18orf9|HsT1705 centrosomal protein 76 protein-coding 163.167-48 chr8 108618327 108618553 + 1.5 NA intron (NR_136411, intron 2 of 3) intron (NR_136411, intron 2 of 3) 169154 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 326.499 chr16 5673857 5674302 + 1.5 NA Intergenic L2a|LINE|L2 41612 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 187.667-51 chr7 106283439 106283650 + 1.5 NA intron (NM_005746, intron 1 of 10) intron (NM_005746, intron 1 of 10) 1439 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 528.334 chr15 95504030 95504690 + 1.5 NA intron (NR_027133, intron 5 of 5) intron (NR_027133, intron 5 of 5) 71267 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 212.667-37 chr5 145755532 145755714 + 1.5 NA TTS (NM_182960) TTS (NM_182960) 79719 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 222.5-19 chr3 87463342 87463525 + 1.5 NA Intergenic L1MA3|LINE|L1 -186849 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 291.5-12 chr2 115270885 115271170 + 1.5 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -38210 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 208.5-14 chr14 83795132 83795319 + 1.5 NA Intergenic Intergenic 1152593 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 152.5-37 chr3 94488612 94488757 + 1.5 NA Intergenic Intergenic 425623 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 200.167-29 chr2 155722577 155722776 + 1.5 NA Intergenic L2c|LINE|L2 532255 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 397.167-2 chr15 56965518 56965880 + 1.5 NA intron (NM_207038, intron 3 of 19) intron (NM_207038, intron 3 of 19) 46254 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 226.001-2 chr5 59927065 59927287 + 1.5 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -33450 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 246-19 chr5 120055658 120055971 + 1.5 NA Intergenic MER45A|DNA|hAT-Tip100 -408464 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 310.167-8 chr7 30116243 30116502 + 1.5 NA intron (NM_001350973, intron 13 of 13) intron (NM_001350973, intron 13 of 13) -18614 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 260.5-7 chr16 79830531 79830851 + 1.5 NA Intergenic Intergenic 35442 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 241-20 chr5 149034600 149034797 + 1.5 NA intron (NM_024577, intron 8 of 16) intron (NM_024577, intron 8 of 16) 27711 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 158.5-59 chr4 123571253 123571398 + 1.5 NA Intergenic Intergenic -78666 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 214.5-5 chr10 105806890 105807058 + 1.5 NA intron (NR_120625, intron 3 of 3) intron (NR_120625, intron 3 of 3) 13359 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 225-24 chr3 60007152 60007411 + 1.5 NA intron (NM_001320901, intron 5 of 6) intron (NM_001320901, intron 5 of 6) 73628 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 128.333-79 chr3 36784891 36784998 + 1.5 NA Intergenic Intergenic 37556 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 266.667-15 chr4 55154144 55154445 + 1.5 NA Intergenic Intergenic -28699 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 190.333-8 chr10 57388765 57388945 + 1.5 NA Intergenic Intergenic -84296 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 397-2 chr4 139451927 139452383 + 1.5 NA non-coding (NR_159963, exon 2 of 2) non-coding (NR_159963, exon 2 of 2) 1886 NR_159963 107984036 Hs.605782 NR_159963 LOC107984036 - uncharacterized LOC107984036 ncRNA 218-12 chr14 66882768 66883023 + 1.5 NA intron (NM_001024218, intron 5 of 21) L1MEf|LINE|L1 -306545 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 119.167-70 chr4 77732474 77732609 + 1.5 NA intron (NM_001365006, intron 8 of 11) intron (NM_001365006, intron 8 of 11) 86523 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 232.667-20 chr3 161997826 161998213 + 1.5 NA Intergenic L1MB1|LINE|L1 501211 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 334-3 chr14 44989950 44990336 + 1.5 NA intron (NR_131765, intron 1 of 19) THE1D|LTR|ERVL-MaLR 27953 NR_131765 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 186.5-23 chr13 80524702 80524846 + 1.5 NA Intergenic L2a|LINE|L2 -183648 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 196.333-29 chr3 150808173 150808318 + 1.5 NA Intergenic Intergenic -45076 NM_005067 6478 Hs.477959 NM_005067 ENSG00000181788 SIAH2 hSiah2 siah E3 ubiquitin protein ligase 2 protein-coding 377.333-4 chr4 98251318 98251790 + 1.5 NA Intergenic Intergenic -9830 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 448.5 chr18 940379 940733 + 1.5 NA Intergenic MIRb|SINE|MIR -12563 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 220-17 chr3 38234563 38234808 + 1.33333 NA intron (NM_005109, intron 10 of 17) L1MB8|LINE|L1 -31127 NM_004256 9390 Hs.225941 NM_004256 ENSG00000172940 SLC22A13 OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3 solute carrier family 22 member 13 protein-coding 198.667-53 chr8 29785031 29785335 + 1.33333 NA intron (NR_125815, intron 1 of 3) intron (NR_125815, intron 1 of 3) 36874 NR_125815 101929450 Hs.512440 NR_125814 ENSG00000253490 LINC02099 - long intergenic non-protein coding RNA 2099 ncRNA 380.666-2 chr5 113480021 113480660 + 1.33333 NA intron (NM_001085377, intron 1 of 18) intron (NM_001085377, intron 1 of 18) 8113 NM_001085377 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 230.833-7 chr2 56333341 56333577 + 1.33333 NA intron (NM_001348516, intron 2 of 2) L2a|LINE|L2 -147689 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 352.666-2 chr20 54730771 54731229 + 1.33333 NA Intergenic Intergenic 255407 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 192.166 chr8 66903275 66903629 + 1.33333 NA intron (NM_001136160, intron 13 of 13) intron (NM_001136160, intron 13 of 13) 19097 NR_002598 641648 NR_002598 ENSG00000254341 SNORD87 HBII-276|U87 small nucleolar RNA, C/D box 87 snoRNA 212.666 chr10 45660453 45660647 + 1.33333 NA intron (NM_174890, intron 2 of 9) L1MCa|LINE|L1 12182 NM_001282905 93550 Hs.89029 NM_174890 ENSG00000172671 ZFAND4 ANUBL1 zinc finger AN1-type containing 4 protein-coding 136.833-34 chr20 53449758 53449913 + 1.33333 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -102935 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 289.166 chr13 113243646 113243964 + 1.33333 NA intron (NM_001008895, intron 11 of 19) intron (NM_001008895, intron 11 of 19) -19115 NR_107042 102465874 NR_107042 ENSG00000277942 MIR8075 hsa-mir-8075 microRNA 8075 ncRNA 203.5-33 chr5 69001750 69002286 + 1.33333 NA intron (NR_130778, intron 1 of 3) intron (NR_130778, intron 1 of 3) 27909 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 276.666 chr1 14546725 14546993 + 1.33333 NA Intergenic Intergenic -51826 NM_001370230 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 163.333-80 chr8 132357911 132358068 + 1.33333 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 89273 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 344.166-2 chr3 60955741 60956240 + 1.33333 NA intron (NR_148922, intron 3 of 3) L3|LINE|CR1 295462 NM_001320900 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 187.333-64 chr4 179364846 179365108 + 1.33333 NA Intergenic Intergenic -1457041 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 135.333-75 chr7 20536604 20536826 + 1.33333 NA Intergenic Intergenic -78952 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 274.333-13 chr7 70846644 70846986 + 1.33333 NA Intergenic Intergenic -285329 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 215.666-2 chr16 82433922 82434173 + 1.33333 NA Intergenic L1ME1|LINE|L1 -192922 NM_001220488 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 281.833-8 chr5 26447410 26447691 + 1.33333 NA Intergenic Intergenic 591036 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 265.166-5 chr9 112459303 112459560 + 1.33333 NA intron (NR_036651, intron 8 of 9) intron (NR_036651, intron 8 of 9) -27396 NM_001287038 158405 Hs.656619 NM_133465 ENSG00000165185 KIAA1958 - KIAA1958 protein-coding 183.167-19 chr17 12069361 12069679 + 1.33333 NA intron (NM_001281435, intron 3 of 11) intron (NM_001281435, intron 3 of 11) -12379 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 221.333-8 chr13 70886690 70886927 + 1.33333 NA Intergenic MER57-int|LTR|ERV1 -128333 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 336-2 chr1 178461876 178462264 + 1.33333 NA intron (NM_004841, intron 12 of 15) intron (NM_004841, intron 12 of 15) -51039 NM_001170723 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 372.001 chr5 27032329 27032855 + 1.33333 NA intron (NM_016279, intron 1 of 11) intron (NM_016279, intron 1 of 11) 5994 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 237-15 chr3 115200937 115201237 + 1.33333 NA Intergenic Intergenic -53799 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 340.333-8 chr17 58766385 58767246 + 1.33333 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 10946 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 172.833-16 chr14 85773256 85773628 + 1.33333 NA Intergenic L1ME1|LINE|L1 -161236 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 316.167-2 chr2 127180168 127180675 + 1.33333 NA Intergenic L1MEd|LINE|L1 25346 NM_001001665 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 168.833-10 chr12 9779856 9780296 + 1.33333 NA Intergenic L1PA13|LINE|L1 -19175 NM_001781 969 Hs.208854 NM_001781 ENSG00000110848 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 149-18 chr12 5972275 5972488 + 1.33333 NA intron (NM_000552, intron 43 of 51) intron (NM_000552, intron 43 of 51) -26149 NM_001278597 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 330.666-6 chr9 27055836 27056100 + 1.33333 NA intron (NM_025103, intron 17 of 19) intron (NM_025103, intron 17 of 19) -50296 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 157.5-53 chr5 111339317 111339512 + 1.33333 NA intron (NM_001744, intron 1 of 10) L1ME3G|LINE|L1 115030 NM_001323377 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 271.167-16 chr6 90615447 90615860 + 1.33333 NA Intergenic Intergenic -28581 NM_145331 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 442.999 chr5 66922621 66923116 + 1.33333 NA intron (NM_015183, intron 3 of 27) intron (NM_015183, intron 3 of 27) -36205 NM_001290226 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 251-17 chr4 67233998 67234299 + 1.33333 NA Intergenic THE1D|LTR|ERVL-MaLR 187852 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 200.333-24 chr21 29097241 29097421 + 1.33333 NA intron (NM_001286634, intron 5 of 7) intron (NM_001286634, intron 5 of 7) 5077 NM_001286619 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 213.333-9 chr11 69981728 69982032 + 1.33333 NA Intergenic L1MB5|LINE|L1 82044 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 168-41 chr3 111555974 111556147 + 1.33333 NA intron (NM_001318889, intron 2 of 7) L1M4a1|LINE|L1 13863 NM_001318889 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 171.166 chr10 101056336 101056541 + 1.33333 NA Intergenic FLAM_C|SINE|Alu -4804 NR_135067 81621 Hs.534859 NM_030929 ENSG00000107821 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal type serine peptidase inhibitor domain 1 protein-coding 175.167-53 chr9 79316764 79316931 + 1.33333 NA Intergenic Intergenic -171181 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 426.667-2 chr2 234116283 234116777 + 1.33333 NA Intergenic Intergenic 65828 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 279.834-4 chr4 12056788 12057436 + 1.33333 NA Intergenic MIR|SINE|MIR -166339 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 329.833-3 chr14 88814393 88814780 + 1.33333 NA Intergenic Intergenic -9567 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 205.666 chr10 60974508 60974698 + 1.33333 NA intron (NM_001350906, intron 2 of 12) intron (NM_001350906, intron 2 of 12) 26394 NM_001350908 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 194.333-11 chr14 61576833 61577030 + 1.33333 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -6278 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 183.333-38 chr3 111555310 111555507 + 1.33333 NA intron (NM_001318889, intron 2 of 7) L1M4a1|LINE|L1 13211 NM_001318889 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 374.667-3 chr20 56083268 56083823 + 1.33333 NA Intergenic L1MEc|LINE|L1 -78026 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 241.833-8 chr15 80095112 80095367 + 1.33333 NA intron (NM_001242912, intron 2 of 6) L1MC4|LINE|L1 -3177 NM_001242919 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 219.666-5 chr4 110952475 110952943 + 1.33333 NA Intergenic Intergenic -92062 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 220.833-24 chr8 88907387 88907681 + 1.33333 NA Intergenic L1MA6|LINE|L1 -580051 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 234.666-4 chr7 36171716 36171904 + 1.33333 NA intron (NM_030636, intron 2 of 7) intron (NM_030636, intron 2 of 7) 18556 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 130.667-54 chr3 125639062 125639254 + 1.33333 NA Intergenic L1P4|LINE|L1 -43661 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 224.333-27 chr6 57020972 57021284 + 1.33333 NA intron (NM_152731, intron 6 of 6) intron (NM_152731, intron 6 of 6) -25404 NM_001286275 57691 Hs.709521 NM_020931 ENSG00000168116 KIAA1586 - KIAA1586 protein-coding 393.999 chr4 32359370 32359744 + 1.33333 NA Intergenic L1MA9|LINE|L1 8519 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 156-45 chr2 186740908 186741060 + 1.33333 NA intron (NM_177454, intron 2 of 7) intron (NM_177454, intron 2 of 7) 46924 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 266-11 chr17 76154142 76154466 + 1.33333 NA non-coding (NR_040017, exon 8 of 8) non-coding (NR_040017, exon 8 of 8) -13059 NM_001454 2302 Hs.651204 NM_001454 ENSG00000129654 FOXJ1 FKHL13|HFH-4|HFH4 forkhead box J1 protein-coding 298.666-3 chr9 77816172 77816527 + 1.33333 NA intron (NM_002072, intron 2 of 6) intron (NM_002072, intron 2 of 6) -168027 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 288.333-6 chr22 27992356 27992727 + 1.33333 NA intron (NM_001145418, intron 19 of 22) intron (NM_001145418, intron 19 of 22) -71929 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 130.667-83 chr6 126306357 126306503 + 1.33333 NA Intergenic AluSc|SINE|Alu -33359 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 143.667-19 chr10 113904249 113904562 + 1.33333 NA intron (NM_198514, intron 9 of 10) intron (NM_198514, intron 9 of 10) 49744 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 180.667-39 chr2 191494901 191495149 + 1.33333 NA Intergenic L1ME1|LINE|L1 -183047 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 336.666-6 chr5 4253333 4253976 + 1.33333 NA Intergenic LTR82A|LTR|ERVL -519827 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 255-11 chr2 58149450 58149795 + 1.33333 NA intron (NM_001130482, intron 12 of 12) L1ME2|LINE|L1 91758 NR_156742 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 256.667-2 chr1 57778352 57778689 + 1.33333 NA intron (NM_001353980, intron 3 of 5) L1ME1|LINE|L1 -82061 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 417.999 chrX 22027294 22027794 + 1.33333 NA Intergenic Intergenic -4781 NM_001282754 5251 Hs.495834 NM_000444 ENSG00000102174 PHEX HPDR|HPDR1|HYP|HYP1|LXHR|PEX|XLH phosphate regulating endopeptidase homolog X-linked protein-coding 169.666-3 chr5 146236085 146236257 + 1.33333 NA intron (NM_018989, intron 7 of 20) L1ME2z|LINE|L1 32566 NM_018989 54439 Hs.61441 NM_018989 ENSG00000091009 RBM27 ARRS1|Psc1|ZC3H18|ZC3H20 RNA binding motif protein 27 protein-coding 334-7 chr6 143249433 143249893 + 1.33333 NA intron (NM_001366354, intron 3 of 4) intron (NM_001366354, intron 3 of 4) 84881 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 289 chr10 83681274 83681673 + 1.33333 NA Intergenic L1MA9|LINE|L1 -4384 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 320.666 chr10 89962036 89962421 + 1.33333 NA Intergenic Intergenic -4855 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 204.333-38 chr4 36150178 36150389 + 1.33333 NA intron (NR_146894, intron 16 of 32) intron (NR_146894, intron 16 of 32) 93656 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 146.667-88 chr8 35007193 35007348 + 1.33333 NA Intergenic Intergenic 223349 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 203.666-3 chr9 73332915 73333186 + 1.33333 NA Intergenic Intergenic 181185 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 351.333-4 chr2 110919298 110919699 + 1.33333 NA intron (NM_001371254, intron 11 of 18) L1PA7|LINE|L1 186925 NM_001371254 210.833-16 chr2 80259918 80260185 + 1.33333 NA intron (NM_001282598, intron 7 of 17) MIR|SINE|MIR 44701 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 268.833-9 chr2 202936243 202936566 + 1.33333 NA intron (NM_001352677, intron 3 of 13) L1MB5|LINE|L1 24129 NM_001282912 79800 Hs.444982 NM_024744 ENSG00000138380 CARF ALS2CR8|NYD-SP24 calcium responsive transcription factor protein-coding 213.5-7 chr17 39121055 39121289 + 1.33333 NA intron (NM_020405, intron 2 of 13) MER4D|LTR|ERV1 30465 NM_020405 57125 Hs.125036 NM_020405 ENSG00000161381 PLXDC1 TEM3|TEM7 plexin domain containing 1 protein-coding 220-19 chr4 47201276 47201457 + 1.33333 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 169799 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 138.667-82 chr6 51792064 51792214 + 1.33333 NA intron (NM_138694, intron 52 of 66) intron (NM_138694, intron 52 of 66) 170269 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 117.667-54 chr17 72416809 72416989 + 1.33333 NA intron (NR_036488, intron 3 of 3) intron (NR_036488, intron 3 of 3) 74088 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 122.5-42 chr18 10121450 10121590 + 1.33333 NA Intergenic L1MA7|LINE|L1 207504 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 241-6 chr12 63891145 63891411 + 1.33333 NA intron (NM_001346201, intron 1 of 21) intron (NM_001346201, intron 1 of 21) 46578 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 238-3 chr1 203621579 203621917 + 1.33333 NA Intergenic Intergenic -5039 NM_001001396 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 257.333-4 chr13 93287021 93287290 + 1.33333 NA intron (NM_005708, intron 1 of 8) Tigger4b|DNA|TcMar-Tigger 60348 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 130-42 chr16 2755148 2755290 + 1.33333 NA intron (NM_016333, intron 1 of 14) intron (NM_016333, intron 1 of 14) 2581 NM_016333 23524 Hs.433343 NM_016333 ENSG00000167978 SRRM2 300-KD|CWF21|Cwc21|HSPC075|SRL300|SRm300 serine/arginine repetitive matrix 2 protein-coding 266.5-15 chr8 72104797 72105480 + 1.33333 NA Intergenic L1MA9|LINE|L1 -29554 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 246.166-3 chr8 82978116 82978393 + 1.33333 NA Intergenic Intergenic 66150 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 264-2 chr10 67310572 67310835 + 1.33333 NA intron (NM_001127384, intron 5 of 17) THE1C|LTR|ERVL-MaLR 92707 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 312.167-10 chr7 54106302 54106680 + 1.33333 NA Intergenic Intergenic -224206 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 401.999 chr2 185815105 185815507 + 1.33333 NA intron (NM_173651, intron 18 of 22) intron (NM_173651, intron 18 of 22) -15155 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 403-3 chr5 104916171 104916805 + 1.33333 NA Intergenic Intergenic -182986 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 206-30 chr5 110319973 110320342 + 1.33333 NA Intergenic MLT1I|LTR|ERVL-MaLR 193758 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 145.833-43 chr2 219838140 219838263 + 1.33333 NA Intergenic Intergenic 66688 NR_146975 105373889 Hs.570066 NR_146975 ENSG00000228909 LINC01803 - long intergenic non-protein coding RNA 1803 ncRNA 364.166 chr13 101450321 101450721 + 1.33333 NA Intergenic Intergenic -2072 NM_001271755 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 135.333-92 chr9 9721423 9721580 + 1.33333 NA intron (NM_002839, intron 7 of 45) intron (NM_002839, intron 7 of 45) -77891 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 257.666 chr4 112418853 112419108 + 1.33333 NA intron (NM_001102406, intron 5 of 15) L1MEd|LINE|L1 -96399 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 161.5-23 chr2 123365313 123365470 + 1.33333 NA Intergenic Intergenic -291910 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 216.834-8 chr9 107310517 107310763 + 1.33333 NA intron (NM_001244724, intron 4 of 9) intron (NM_001244724, intron 4 of 9) 25871 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 310.667 chr14 66965624 66966060 + 1.33333 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -223598 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 186-33 chr4 36389908 36390204 + 1.33333 NA Intergenic L2a|LINE|L2 36372 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 259.166 chr2 103677008 103677247 + 1.33333 NA Intergenic Intergenic -692698 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 189.5 chr1 62384041 62384214 + 1.33333 NA Intergenic Intergenic -52177 NM_001017415 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 236-5 chr14 87945531 87945872 + 1.33333 NA exon (NM_001201402, exon 14 of 17) exon (NM_001201402, exon 14 of 17) 47481 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 151.5-9 chr1 210306898 210307021 + 1.33333 NA Intergenic Intergenic -21293 NM_001170564 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 202.333-8 chr10 90039691 90039911 + 1.33333 NA Intergenic MLT1K|LTR|ERVL-MaLR -82428 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 118.5-2 chr1 41266561 41266733 + 1.33333 NA Intergenic Intergenic -24341 NM_001350667 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 206 chr1 195421733 195421933 + 1.33333 NA Intergenic L1MA3|LINE|L1 666882 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 323.667-12 chr8 83336713 83337093 + 1.33333 NA Intergenic Intergenic -66855 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 255.5-21 chr7 84909778 84910076 + 1.33333 NA Intergenic MLT1H|LTR|ERVL-MaLR 212004 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 285.167-4 chr2 189813283 189813623 + 1.33333 NA intron (NM_000534, intron 4 of 12) Kanga1c|DNA|TcMar-Tc2 29003 NM_001321046 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 240.667-7 chr10 68451424 68451730 + 1.33333 NA intron (NM_001080449, intron 5 of 20) intron (NM_001080449, intron 5 of 20) 20396 NM_001080449 1763 Hs.532446 NM_001080449 ENSG00000138346 DNA2 DNA2L|hDNA2 DNA replication helicase/nuclease 2 protein-coding 304.834-3 chr2 212359715 212360039 + 1.33333 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 66483 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 211.166-4 chr5 76117355 76117599 + 1.33333 NA intron (NM_014979, intron 1 of 12) L1ME4a|LINE|L1 34094 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 245.833-20 chr9 91461966 91462358 + 1.33333 NA Intergenic Intergenic -37536 NM_001289999 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 240.333-14 chr2 31210999 31211413 + 1.33333 NA intron (NM_001321270, intron 2 of 21) L1M4|LINE|L1 6309 NM_001145122 440854 Hs.468059 NM_001145122 ENSG00000214711 CAPN14 - calpain 14 protein-coding 212.333-8 chr12 12317185 12317383 + 1.33333 NA Intergenic L1ME4a|LINE|L1 32958 NM_001363613 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 148.666-3 chr16 29645369 29645511 + 1.33333 NA Intergenic L4_B_Mam|LINE|RTE-X -17510 NM_001030288 6693 Hs.632188 NM_003123 ENSG00000197471 SPN CD43|GALGP|GPL115|LSN sialophorin protein-coding 266.333-7 chr2 149265610 149265973 + 1.33333 NA Intergenic Intergenic -64194 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 202-23 chr21 30633230 30633432 + 1.33333 NA Intergenic L1M3|LINE|L1 -1875 NM_181616 337976 Hs.553698 NM_181616 ENSG00000184032 KRTAP20-2 KAP20.2 keratin associated protein 20-2 protein-coding 518.666 chr1 42125968 42126565 + 1.33333 NA Intergenic Intergenic -27144 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 187-34 chr5 45058741 45058914 + 1.33333 NA Intergenic Intergenic 249880 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 281-16 chr4 138206398 138206734 + 1.33333 NA intron (NM_014331, intron 6 of 11) intron (NM_014331, intron 6 of 11) 35783 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 416.166 chr8 6667840 6668443 + 1.33333 NA intron (NR_125386, intron 1 of 4) L1MEd|LINE|L1 40068 NR_125386 100507530 Hs.490892 NR_125386 MCPH1-AS1 - MCPH1 antisense RNA 1 ncRNA 119.167-22 chr14 54231525 54231827 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -165192 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 236.834-4 chr12 17571722 17572209 + 1.33333 NA Intergenic L1MA8|LINE|L1 17113 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 225.5-29 chr2 58890905 58891147 + 1.33333 NA intron (NR_033873, intron 3 of 13) L2c|LINE|L2 -326682 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 189.5-12 chr13 79837924 79838147 + 1.33333 NA Intergenic Intergenic 33649 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 214-9 chr11 87957939 87958250 + 1.33333 NA Intergenic MER47B|DNA|TcMar-Tigger 217349 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 120-114 chr9 74017560 74017681 + 1.33333 NA Intergenic L1MA3|LINE|L1 -353911 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 120.833-23 chr19 8264035 8264227 + 1.33333 NA Intergenic Intergenic 44227 NM_016579 51293 Hs.558499 NM_016579 ENSG00000167775 CD320 8D6|8D6A|TCBLR|TCN2R CD320 molecule protein-coding 464.334 chr4 78436729 78437114 + 1.33333 NA intron (NM_001166133, intron 38 of 41) L1ME3F|LINE|L1 -114849 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 158-52 chr7 112815553 112815700 + 1.33333 NA Intergenic Intergenic -25203 NR_109840 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 372.5 chr1 67626782 67627436 + 1.33333 NA Intergenic Intergenic -58092 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 269.5-12 chr2 80784887 80785211 + 1.33333 NA Intergenic Intergenic 471670 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 310.833-4 chr4 60761934 60762507 + 1.33333 NA Intergenic Intergenic -160399 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 287-10 chr7 33376037 33376397 + 1.33333 NA intron (NM_198428, intron 17 of 22) L1PREC2|LINE|L1 246653 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 316.667-3 chr13 41026284 41026940 + 1.33333 NA intron (NM_001370329, intron 1 of 9) ERVL-B4-int|LTR|ERVL -7296 NM_001370332 1997 Hs.135646 NM_172373 ENSG00000120690 ELF1 EFTUD1|RIA1 E74 like ETS transcription factor 1 protein-coding 228.333-20 chr4 1904496 1904782 + 1.33333 NA intron (NM_133334, intron 2 of 8) intron (NM_133334, intron 2 of 8) 4013 NM_133334 7468 Hs.113876 NM_007331 ENSG00000109685 NSD2 KMT3F|KMT3G|MMSET|REIIBP|TRX5|WHS|WHSC1 nuclear receptor binding SET domain protein 2 protein-coding 285.833-3 chr10 76422725 76423059 + 1.33333 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -465152 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 130-84 chr5 80153702 80153845 + 1.33333 NA intron (NR_126061, intron 8 of 13) MER20B|DNA|hAT-Charlie -70108 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 165.666-2 chr7 46696879 46697201 + 1.33333 NA promoter-TSS (NR_134575) promoter-TSS (NR_134575) 82 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 411.999 chr10 90054730 90055195 + 1.33333 NA Intergenic Intergenic -97589 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 236.333-19 chr2 240064400 240064819 + 1.33333 NA Intergenic L1MEg|LINE|L1 -18537 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 206.667-13 chr11 36006214 36006540 + 1.33333 NA intron (NM_001304264, intron 1 of 5) MIRb|SINE|MIR -3721 NR_039769 100616311 NR_039769 ENSG00000263389 MIR3973 - microRNA 3973 ncRNA 158.333-49 chr20 53320039 53320193 + 1.33333 NA intron (NM_173485, intron 2 of 2) (CAT)n|Simple_repeat|Simple_repeat 134833 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 184-13 chr12 61391357 61391522 + 1.33333 NA Intergenic (AAGATT)n|Simple_repeat|Simple_repeat 801400 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 254.667-13 chr2 50329071 50329485 + 1.33333 NA intron (NM_001330093, intron 17 of 22) L1ME4a|LINE|L1 18476 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 215-26 chr4 173260137 173260505 + 1.33333 NA intron (NM_017423, intron 2 of 11) LTR64|LTR|ERV1 -7839 NR_036093 100422849 NR_036093 ENSG00000221296 MIR548T - microRNA 548t ncRNA 259.333-19 chr6 68777606 68777943 + 1.33333 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 142492 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 317.5-12 chr5 57444299 57444550 + 1.33333 NA Intergenic AluSz|SINE|Alu 38387 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 223.666-2 chr7 22628820 22629057 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR 36595 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 169.834-3 chr2 127275099 127275414 + 1.33333 NA intron (NM_001303418, intron 10 of 14) FLAM_C|SINE|Alu 18888 NM_001303418 2071 Hs.469872 NM_000122 ENSG00000163161 ERCC3 BTF2|GTF2H|RAD25|TFIIH|TTD2|XPB ERCC excision repair 3, TFIIH core complex helicase subunit protein-coding 284.167-6 chr16 52960767 52961379 + 1.33333 NA Intergenic MIR|SINE|MIR 91800 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 302-13 chr12 83359427 83359779 + 1.33333 NA Intergenic Intergenic 672448 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 119.667-89 chr6 91344292 91344445 + 1.33333 NA Intergenic Intergenic -177292 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 357.333-3 chr15 43181184 43181586 + 1.33333 NA intron (NM_024956, intron 13 of 13) intron (NM_024956, intron 13 of 13) -4018 NR_027514 23582 Hs.36794 NM_012142 ENSG00000166946 CCNDBP1 DIP1|GCIP|HHM cyclin D1 binding protein 1 protein-coding 302.167-10 chr5 23882200 23882599 + 1.33333 NA Intergenic L1MA9|LINE|L1 -68949 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 298.833-3 chr15 26920808 26921292 + 1.33333 NA intron (NM_001165037, intron 7 of 10) L1MDa|LINE|L1 -50131 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 170.666-4 chr3 85678083 85678354 + 1.33333 NA intron (NM_001256503, intron 2 of 9) L2a|LINE|L2 -48264 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 152.167-81 chr9 25084388 25084612 + 1.33333 NA Intergenic Intergenic -538603 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 298.167-7 chr3 184650905 184651435 + 1.33333 NA Intergenic Intergenic 60894 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 MAGE-F1 MAGE family member F1 protein-coding 229.333-13 chr16 6937653 6937950 + 1.33333 NA intron (NM_001142334, intron 1 of 13) MER4B|LTR|ERV1 163992 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 204.333-17 chr14 41216930 41217101 + 1.33333 NA Intergenic Intergenic 262304 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 176-23 chr22 26547765 26547973 + 1.33333 NA intron (NM_001362923, intron 1 of 7) intron (NM_001362923, intron 1 of 7) 7454 NR_031615 100313914 NR_031615 ENSG00000221760 MIR548J MIRN548J|hsa-mir-548j microRNA 548j ncRNA 478.166 chr3 103786311 103786980 + 1.33333 NA Intergenic Intergenic -262529 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 213.666 chr5 117355025 117355247 + 1.33333 NA Intergenic Intergenic -60376 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 305.833-9 chr8 82032682 82032984 + 1.33333 NA Intergenic Intergenic -190547 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 255.5-18 chr5 51323599 51324005 + 1.33333 NA Intergenic Intergenic 59530 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 284.667-13 chr4 170276229 170276578 + 1.33333 NA intron (NR_125889, intron 1 of 2) intron (NR_125889, intron 1 of 2) 49812 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 127-18 chr12 3450187 3450302 + 1.33333 NA intron (NM_001256536, intron 1 of 9) Charlie1a|DNA|hAT-Charlie -40959 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 419 chr12 20273431 20274003 + 1.33333 NA Intergenic Tigger15a|DNA|TcMar-Tigger -95528 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 247.833-4 chr2 102128604 102128838 + 1.33333 NA intron (NM_001320980, intron 1 of 11) intron (NM_001320980, intron 1 of 11) -13070 NM_001320981 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 179.333-16 chr12 101829548 101829765 + 1.33333 NA intron (NM_024312, intron 1 of 20) intron (NM_024312, intron 1 of 20) 1303 NM_024312 79158 Hs.46850 NM_024312 ENSG00000111670 GNPTAB GNPTA|ICD N-acetylglucosamine-1-phosphate transferase subunits alpha and beta protein-coding 392 chr3 10429851 10430316 + 1.33333 NA intron (NM_001001331, intron 2 of 22) Tigger1|DNA|TcMar-Tigger -35521 NR_030614 100126334 NR_030614 ENSG00000216135 MIR885 MIRN885|hsa-mir-885|mir-885 microRNA 885 ncRNA 178.833-15 chr17 67120781 67120996 + 1.33333 NA intron (NM_001330447, intron 26 of 32) intron (NM_001330447, intron 26 of 32) 76334 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 425.333-3 chr4 83187961 83188511 + 1.33333 NA Intergenic MER34B-int|LTR|ERV1 -73507 NM_016619 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 295.333-8 chr2 144744255 144744648 + 1.33333 NA intron (NR_033870, intron 1 of 4) L1MA3|LINE|L1 76484 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 321.499-2 chr2 51218478 51218783 + 1.33333 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 186029 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 210.166-3 chr21 32215699 32215911 + 1.33333 NA Intergenic Intergenic 63244 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 173.333-2 chr1 65534008 65534492 + 1.33333 NA intron (NM_001198687, intron 1 of 18) L1ME3B|LINE|L1 8561 NM_001198688 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 181.833-13 chr13 88778342 88778531 + 1.33333 NA Intergenic Intergenic 151583 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 273.999-2 chr5 105951054 105951281 + 1.33333 NA Intergenic L1MEj|LINE|L1 851693 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 183.833-30 chr4 32452293 32452531 + 1.33333 NA Intergenic Intergenic 101374 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 224.833-2 chr1 220039174 220039521 + 1.33333 NA intron (NM_004446, intron 2 of 31) LTR49-int|LTR|ERV1 7158 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 153.333-81 chr8 50829221 50829367 + 1.33333 NA Intergenic L1MB7|LINE|L1 665163 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 340.333-11 chr5 4844429 4844803 + 1.33333 NA Intergenic Intergenic 71135 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 251-2 chr10 33438232 33438441 + 1.33333 NA Intergenic L1MD|LINE|L1 -103431 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 298.166-2 chr3 110354440 110354833 + 1.33333 NA Intergenic Intergenic 715323 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 375.333-2 chr14 20292370 20292848 + 1.33333 NA intron (NM_138376, intron 8 of 9) L2c|LINE|L2 13342 NM_138376 91875 Hs.98553 NM_138376 ENSG00000136319 TTC5 Strap tetratricopeptide repeat domain 5 protein-coding 283.833-3 chr11 125204928 125205246 + 1.33333 NA intron (NM_022062, intron 1 of 12) L2a|LINE|L2 40336 NM_022062 63876 Hs.278564 NM_022062 ENSG00000165495 PKNOX2 PREP2 PBX/knotted 1 homeobox 2 protein-coding 176.333-20 chr14 48242733 48242898 + 1.33333 NA Intergenic MIR3|SINE|MIR -447801 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 149.666 chr1 215230667 215230794 + 1.33333 NA intron (NM_001017424, intron 6 of 6) MIRb|SINE|MIR 147993 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 331.833-9 chr7 126859832 126860277 + 1.33333 NA intron (NM_001371085, intron 6 of 10) MIR|SINE|MIR 198130 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 256.333 chr1 30530407 30530674 + 1.33333 NA Intergenic AluSz|SINE|Alu -188232 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 248-19 chr6 124770086 124770504 + 1.33333 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -192250 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 156.333-89 chr8 126683369 126683591 + 1.33333 NA Intergenic L2b|LINE|L2 -125002 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 375.999 chr2 227004902 227005312 + 1.33333 NA 3' UTR (NM_000092, exon 48 of 48) 3' UTR (NM_000092, exon 48 of 48) 159452 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 307.333-9 chr6 97370346 97370748 + 1.33333 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 64961 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 147.333-100 chr9 105772796 105772960 + 1.33333 NA intron (NM_018112, intron 5 of 5) L1ME5|LINE|L1 78337 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 122.167-11 chr11 79615781 79615958 + 1.33333 NA Intergenic MIRb|SINE|MIR -174839 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 404.666 chr12 60070709 60071293 + 1.33333 NA Intergenic Intergenic 381631 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 148-40 chr2 5682861 5683085 + 1.33333 NA intron (NR_110580, intron 2 of 4) MLT1B|LTR|ERVL-MaLR 8145 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 156.833-40 chr4 53774651 53774842 + 1.33333 NA Intergenic MSTD|LTR|ERVL-MaLR 78845 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 272.333-3 chr12 18697713 18698013 + 1.33333 NA intron (NM_033123, intron 10 of 14) intron (NM_033123, intron 10 of 14) 39646 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 344-5 chr6 130294254 130294834 + 1.33333 NA intron (NM_001258275, intron 2 of 13) intron (NM_001258275, intron 2 of 13) 71324 NM_001258275 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 321.166-2 chr16 17795025 17795439 + 1.33333 NA Intergenic L1M6|LINE|L1 -324272 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 249.333-6 chr14 51712956 51713317 + 1.33333 NA intron (NM_001042481, intron 10 of 14) intron (NM_001042481, intron 10 of 14) -4147 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 171.166-3 chr8 8953371 8953540 + 1.33333 NA Intergenic Intergenic -49442 NM_001354636 90459 Hs.20000 NM_153332 ENSG00000104626 ERI1 3'HEXO|HEXO|THEX1 exoribonuclease 1 protein-coding 197.666-3 chr2 187375898 187376158 + 1.33333 NA intron (NM_001369434, intron 9 of 15) intron (NM_001369434, intron 9 of 15) 72224 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 217.166-2 chr10 64306426 64306639 + 1.33333 NA Intergenic MIRb|SINE|MIR -518996 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 375.834 chr10 82649069 82649687 + 1.33333 NA intron (NR_163253, intron 3 of 10) MER67B|LTR|ERV1 -416458 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 125.333-80 chr3 105865117 105865272 + 1.33333 NA intron (NR_135809, intron 2 of 18) intron (NR_135809, intron 2 of 18) 2397 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 348.166-2 chr2 29682280 29682672 + 1.33333 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -207099 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 316.666-2 chr7 42844868 42845218 + 1.33333 NA Intergenic Intergenic 66800 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 308.333-8 chr5 73084731 73084999 + 1.33333 NA intron (NM_001146032, intron 23 of 24) intron (NM_001146032, intron 23 of 24) -35710 NM_173490 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 165.5-25 chr16 8540414 8540657 + 1.33333 NA intron (NM_001290098, intron 2 of 2) intron (NM_001290098, intron 2 of 2) 49303 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 268.666-2 chr10 25052049 25052290 + 1.33333 NA intron (NM_001270383, intron 2 of 5) intron (NM_001270383, intron 2 of 5) 10110 NM_001270383 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 132.167 chr1 2986844 2987029 + 1.33333 NA Intergenic MIR|SINE|MIR -34531 NM_080431 140625 Hs.236635 NM_080431 ENSG00000169717 ACTRT2 ARPM2|ARPT2|Arp-T2|HARPM2 actin related protein T2 protein-coding 248.666-4 chr21 29161616 29161871 + 1.33333 NA intron (NM_001286620, intron 4 of 4) intron (NM_001286620, intron 4 of 4) 16166 NM_001286624 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 119-100 chr8 132885277 132885469 + 1.33333 NA intron (NM_003235, intron 8 of 47) intron (NM_003235, intron 8 of 47) 18415 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 268-21 chr7 97591320 97591636 + 1.33333 NA Intergenic L1M1|LINE|L1 -140608 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 183.333-57 chr7 93542023 93542272 + 1.33333 NA intron (NM_001164737, intron 2 of 15) Tigger3b|DNA|TcMar-Tigger 17663 NM_001164738 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 202-5 chr12 17225687 17225958 + 1.33333 NA Intergenic Intergenic 237075 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 137.666-4 chr4 119923392 119923496 + 1.33333 NA Intergenic Intergenic -16096 NR_121639 100996694 Hs.119926 NR_121639 ENSG00000250392 LINC02502 - long intergenic non-protein coding RNA 2502 ncRNA 414 chr11 56884066 56884771 + 1.33333 NA Intergenic L1MC4|LINE|L1 35940 NR_110137 101927120 Hs.472675 NR_110136 ENSG00000255433 LINC02735 - long intergenic non-protein coding RNA 2735 ncRNA 230.333-28 chr7 7426607 7426880 + 1.33333 NA intron (NM_001037763, intron 25 of 34) intron (NM_001037763, intron 25 of 34) 109130 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 154.666-2 chr5 128454870 128455091 + 1.33333 NA intron (NM_001999, intron 6 of 64) intron (NM_001999, intron 6 of 64) 83265 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 235.5-23 chr20 13899170 13899436 + 1.33333 NA intron (NR_073206, intron 6 of 20) L1MD|LINE|L1 91311 NM_025229 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 185.5-37 chr4 129178752 129178954 + 1.33333 NA Intergenic Intergenic 82701 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 195-42 chr7 17283122 17283334 + 1.33333 NA Intergenic L2c|LINE|L2 -15424 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 392.167-4 chr5 115919712 115920216 + 1.33333 NA Intergenic L1ME3Cz|LINE|L1 -36607 NR_157226 107986443 NR_157226 LINCADL LINC-ADAL lincRNA adipogenesis and lipogenesis associated ncRNA 279.667-19 chr8 121888273 121888832 + 1.33333 NA Intergenic L1PA16|LINE|L1 -247112 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 273.167-3 chr11 27496492 27497274 + 1.33333 NA 3' UTR (NM_018362, exon 5 of 5) 3' UTR (NM_018362, exon 5 of 5) 9886 NM_018362 55327 Hs.91393 NM_018362 ENSG00000148943 LIN7C LIN-7-C|LIN-7C|MALS-3|MALS3|VELI3 lin-7 homolog C, crumbs cell polarity complex component protein-coding 302.666-4 chr2 2841077 2841311 + 1.33333 NA Intergenic Intergenic 284832 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 402.666-4 chr9 80371044 80371455 + 1.33333 NA Intergenic Intergenic 396226 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 215-28 chr5 8437806 8438068 + 1.33333 NA intron (NR_039984, intron 2 of 5) intron (NR_039984, intron 2 of 5) 19627 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 265.999-2 chr9 118918866 118919090 + 1.33333 NA Intergenic L1MA2|LINE|L1 239307 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 360.833 chr1 173108313 173108800 + 1.33333 NA Intergenic L1M4|LINE|L1 -57593 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 351.667-6 chr16 72560408 72561083 + 1.33333 NA intron (NR_159370, intron 2 of 5) intron (NR_159370, intron 2 of 5) 104225 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 319-7 chr4 127995972 127996269 + 1.33333 NA intron (NM_001039717, intron 4 of 10) intron (NM_001039717, intron 4 of 10) -30157 NM_152778 256471 Hs.480701 NM_152778 ENSG00000164073 MFSD8 CCMD|CLN7 major facilitator superfamily domain containing 8 protein-coding 193-4 chr1 117140496 117140643 + 1.33333 NA Intergenic AluJr|SINE|Alu -18820 NM_025188 80263 Hs.301526 NM_025188 ENSG00000134253 TRIM45 RNF99 tripartite motif containing 45 protein-coding 146-53 chr4 70943934 70944063 + 1.33333 NA intron (NM_173468, intron 1 of 5) Arthur1|DNA|hAT-Tip100 41629 NM_173468 92597 Hs.691454 NM_173468 ENSG00000173542 MOB1B MATS2|MOB4A|MOBKL1A MOB kinase activator 1B protein-coding 269.333-12 chr4 114643617 114643911 + 1.33333 NA intron (NM_003360, intron 1 of 4) intron (NM_003360, intron 1 of 4) -12995 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 225.334-3 chr15 97640105 97640416 + 1.33333 NA Intergenic L1M5|LINE|L1 -79562 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 322.333 chr17 63297165 63297499 + 1.33333 NA intron (NM_025185, intron 8 of 25) L1MB5|LINE|L1 142935 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 160.333-33 chr20 57781354 57781478 + 1.33333 NA Intergenic (TGATGG)n|Simple_repeat|Simple_repeat -69880 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 282.833 chr10 56416164 56416481 + 1.33333 NA Intergenic Intergenic -55049 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 187.333-73 chr6 135546350 135546541 + 1.33333 NA intron (NR_152845, intron 2 of 4) intron (NR_152845, intron 2 of 4) 48644 NR_152844 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 139-11 chr13 88418570 88418776 + 1.33333 NA Intergenic Intergenic -122156 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 150.333-71 chr4 31696805 31697006 + 1.33333 NA Intergenic MIRb|SINE|MIR 190361 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 198.166 chr5 146900021 146900341 + 1.33333 NA intron (NM_001271900, intron 2 of 10) intron (NM_001271900, intron 2 of 10) 19325 NR_047115 100874361 Hs.193825 NR_047115 ENSG00000249553 PPP2R2B-IT1 - PPP2R2B intronic transcript 1 ncRNA 221.333-34 chr8 115431984 115432165 + 1.33333 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 235939 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 194.666-9 chr3 113428971 113429246 + 1.33333 NA intron (NR_046728, intron 4 of 5) intron (NR_046728, intron 4 of 5) 3092 NR_107043 102466253 NR_107043 ENSG00000275670 MIR8076 hsa-mir-8076 microRNA 8076 ncRNA 222.167-23 chr3 132179175 132179502 + 1.33333 NA Intergenic Intergenic -138069 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 194.666-10 chr4 91586700 91587012 + 1.33333 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 690446 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 431-3 chr20 7710934 7711328 + 1.33333 NA Intergenic MER5B|DNA|hAT-Charlie 229327 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 179.333-15 chr12 100004130 100004335 + 1.33333 NA Intergenic MSTC|LTR|ERVL-MaLR -19578 NM_152788 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 193.666-4 chrX 47744317 47744557 + 1.33333 NA Intergenic AluJo|SINE|Alu 37246 NR_033924 392459 Hs.562045 NR_033924 ENSG00000187893 CXXC1P1 CXorf25|NCRNA00236 CXXC finger protein 1 pseudogene 1 pseudo 158-36 chr4 85513604 85513836 + 1.33333 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 38570 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 240.5-26 chr9 11166774 11166979 + 1.33333 NA Intergenic LTR49-int|LTR|ERV1 553670 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 263.333-16 chr19 37248015 37248399 + 1.33333 NA 3' UTR (NM_001345947, exon 5 of 5) 3' UTR (NM_001345947, exon 5 of 5) -3678 NR_110719 101927667 Hs.633102 NR_110718 ENSG00000226686 LINC01535 - long intergenic non-protein coding RNA 1535 ncRNA 206.666-3 chr18 68718086 68718256 + 1.33333 NA intron (NM_001093729, intron 2 of 9) MLT1A1|LTR|ERVL-MaLR 2955 NM_001093729 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 137.333-31 chr15 51634331 51634510 + 1.33333 NA Intergenic Intergenic -11649 NM_015263 23312 Hs.511386 NM_015263 ENSG00000104093 DMXL2 DFNA71|PEPNS|RC3 Dmx like 2 protein-coding 401.833-2 chr17_GL000205v2_random 34143 34649 + 1.33333 NA Intergenic CER|Satellite|Satellite 23570 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 281-24 chr9 92643665 92644087 + 1.33333 NA intron (NM_022755, intron 6 of 12) intron (NM_022755, intron 6 of 12) 25826 NR_036505 100128361 Hs.660395 NR_036505 LOC100128361 - uncharacterized LOC100128361 ncRNA 373.833 chr19 34013021 34013440 + 1.33333 NA Intergenic L1MA9|LINE|L1 -159274 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 290.666 chr1 236995240 236995671 + 1.33333 NA Intergenic AluJr|SINE|Alu 8986 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 171.667-56 chr3 185837571 185837969 + 1.33333 NA Intergenic L1MC4|LINE|L1 -12728 NM_001291869 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 215-41 chr8 25163722 25163947 + 1.33333 NA Intergenic Intergenic -20855 NM_001322810 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 213.333-35 chr5 8585835 8586037 + 1.33333 NA Intergenic Intergenic 125011 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 210.333-31 chr5 37664374 37664632 + 1.33333 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 170319 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 260.667-2 chr12 27372889 27373266 + 1.33333 NA intron (NM_001248002, intron 3 of 15) L2|LINE|L2 40241 NM_001248005 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 130-26 chr12 40860019 40860164 + 1.33333 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) 32153 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 290.499-2 chr6 68836078 68836381 + 1.33333 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 200947 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 375.166-3 chr8 129198577 129199584 + 1.33333 NA Intergenic Intergenic 42160 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 154.666 chr21 18778188 18778440 + 1.33333 NA Intergenic AluSx1|SINE|Alu -18502 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 171.667-4 chr1 87837884 87838251 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -466412 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 251.333-22 chr8 132578133 132578424 + 1.33333 NA intron (NR_135913, intron 10 of 10) intron (NR_135913, intron 10 of 10) -16799 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 158.166 chr1 86713928 86714118 + 1.33333 NA intron (NM_001206653, intron 1 of 7) intron (NM_001206653, intron 1 of 7) 9447 NM_001206652 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 225.333-14 chr2 14076752 14077045 + 1.33333 NA Intergenic L1M4b|LINE|L1 324060 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 142.333-100 chr8 135297451 135297594 + 1.33333 NA intron (NR_120396, intron 4 of 4) L1ME2|LINE|L1 63391 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 218-3 chr1 240706868 240707054 + 1.33333 NA Intergenic Intergenic -94806 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 230.833-21 chr5 159379341 159379597 + 1.33333 NA Intergenic L1PB2|LINE|L1 47951 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 294-8 chr20 10841064 10841455 + 1.33333 NA Intergenic L1MEc|LINE|L1 68013 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 226.666-7 chr9 27346399 27346736 + 1.33333 NA intron (NM_024761, intron 3 of 3) intron (NM_024761, intron 3 of 3) -49417 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 249.333-12 chr2 53358338 53358652 + 1.33333 NA Intergenic MamGypsy2-I|LTR|Gypsy -409288 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 203.666 chr5 125460917 125461109 + 1.33333 NA Intergenic Intergenic -32248 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 241-10 chr17 70870200 70870603 + 1.33333 NA Intergenic L2c|LINE|L2 331778 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 228.666-3 chr3 94023687 94024224 + 1.33333 NA intron (NM_001001850, intron 1 of 1) intron (NM_001001850, intron 1 of 1) 4642 NM_001001850 415117 Hs.679768 NM_001001850 ENSG00000178750 STX19 - syntaxin 19 protein-coding 189.833-9 chr15 27735231 27735451 + 1.33333 NA Intergenic L1M1|LINE|L1 363974 NM_000275 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 180-60 chr9 27769759 27769930 + 1.33333 NA Intergenic Intergenic -195978 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 310.5 chr1 70575116 70575442 + 1.33333 NA Intergenic MER31-int|LTR|ERV1 -131174 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 166.167-22 chr16 84698397 84698532 + 1.33333 NA Intergenic L1MC4|LINE|L1 -1536 NM_005153 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 250-17 chr4 143629367 143629600 + 1.33333 NA intron (NM_001168235, intron 2 of 7) intron (NM_001168235, intron 2 of 7) 70011 NR_003675 441046 Hs.135705 NM_001011539 ENSG00000236296 GUSBP5 GYPELOC441046 GUSB pseudogene 5 pseudo 165.166-2 chrX 49923941 49924128 + 1.33333 NA intron (NM_001127899, intron 2 of 14) intron (NM_001127899, intron 2 of 14) 1438 NM_001127898 1184 Hs.166486 NM_000084 ENSG00000171365 CLCN5 CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2 chloride voltage-gated channel 5 protein-coding 226.166-3 chr18 12798996 12799251 + 1.33333 NA intron (NM_080422, intron 8 of 9) intron (NM_080422, intron 8 of 9) 41839 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 243.166-3 chr4 73004756 73005015 + 1.33333 NA Intergenic Intergenic 64831 NM_001297732 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 183.166 chr3 174853645 174853862 + 1.33333 NA Intergenic L1MA4|LINE|L1 -5581 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 248-12 chr3 21103503 21103773 + 1.33333 NA Intergenic L1PA15|LINE|L1 -302088 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 203.5-31 chr4 52291834 52292182 + 1.33333 NA Intergenic MER33|DNA|hAT-Charlie 240704 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 191-21 chr18 28116966 28117221 + 1.33333 NA intron (NM_001792, intron 2 of 15) intron (NM_001792, intron 2 of 15) 60037 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 260.499 chr14 54681992 54682225 + 1.33333 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) -72725 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 288.833-6 chr2 214894693 214895076 + 1.33333 NA intron (NR_110292, intron 2 of 3) intron (NR_110292, intron 2 of 3) 47937 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 164.333-35 chr2 184210338 184210503 + 1.33333 NA Intergenic Intergenic -168555 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 316.333-12 chr8 143898241 143898564 + 1.33333 NA Intergenic AluSx|SINE|Alu -19938 NM_031308 83481 Hs.200412 NM_031308 ENSG00000261150 EPPK1 EPIPL|EPIPL1 epiplakin 1 protein-coding 224-11 chr14 27414570 27414934 + 1.33333 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -197836 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 154.833-44 chr4 71846730 71846960 + 1.33333 NA Intergenic AluSz6|SINE|Alu -41325 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 203.333-6 chr11 91331877 91332125 + 1.33333 NA Intergenic L1MB8|LINE|L1 -462799 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 345.333-2 chr17 48162065 48162372 + 1.33333 NA intron (NM_001075099, intron 11 of 12) AluSx|SINE|Alu -5707 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 186.333-17 chr13 57013404 57013599 + 1.33333 NA Intergenic Intergenic -127417 NM_001130404 729233 Hs.723090 NM_001130404 ENSG00000204918 PRR20B PRR20|PRR20A|PRR20C|PRR20D|PRR20E proline rich 20B protein-coding 205.666-4 chr5 107321981 107322236 + 1.33333 NA Intergenic Intergenic -311094 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 288.167-2 chr11 39771212 39771628 + 1.33333 NA Intergenic L1MD|LINE|L1 521710 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 292.167-8 chr6 39408480 39408840 + 1.33333 NA intron (NM_001289024, intron 2 of 9) L1ME3G|LINE|L1 22730 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 203.167-35 chr7 99793203 99793551 + 1.33333 NA Intergenic L1MB5|LINE|L1 -9193 NM_001202855 1576 Hs.728751 NM_017460 ENSG00000160868 CYP3A4 CP33|CP34|CYP3A|CYP3A3|CYPIIIA3|CYPIIIA4|HLP|NF-25|P450C3|P450PCN1 cytochrome P450 family 3 subfamily A member 4 protein-coding 171.833-7 chr10 31885149 31885491 + 1.33333 NA intron (NM_001270696, intron 3 of 17) intron (NM_001270696, intron 3 of 17) 23606 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 192-20 chr19 28729762 28729931 + 1.33333 NA Intergenic LTR48B|LTR|ERV1 -2152 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 342-7 chr3 197843795 197844165 + 1.33333 NA intron (NM_001365717, intron 10 of 19) L2a|LINE|L2 52726 NR_158582 84859 Hs.518414 NM_032773 ENSG00000186001 LRCH3 - leucine rich repeats and calponin homology domain containing 3 protein-coding 196.5-40 chr8 108652112 108652364 + 1.33333 NA intron (NR_136411, intron 2 of 3) L1ME3G|LINE|L1 135356 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 156-59 chr4 74197188 74197346 + 1.33333 NA intron (NM_001351314, intron 5 of 9) intron (NM_001351314, intron 5 of 9) 39149 NM_001351314 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 270.499 chr8 112005231 112005451 + 1.33333 NA Intergenic Intergenic 628702 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 259.666 chr2 54376233 54376582 + 1.33333 NA Intergenic L3|LINE|CR1 45523 NM_001369401 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 228.333-40 chr8 126187472 126187802 + 1.33333 NA Intergenic Intergenic -137858 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 167.666 chr20 21717295 21717599 + 1.33333 NA 3' UTR (NM_001257096, exon 5 of 5) 3' UTR (NM_001257096, exon 5 of 5) 11783 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 308-4 chr2 69836342 69836635 + 1.33333 NA intron (NM_178439, intron 1 of 13) MIR|SINE|MIR 6828 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 234.5-7 chr12 115549853 115550163 + 1.33333 NA Intergenic Intergenic 598646 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 271.833-4 chr11 126994567 126994836 + 1.33333 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) 6069 NM_032531 84623 Hs.376015 NM_032531 ENSG00000149571 KIRREL3 KIRRE|MRD4|NEPH2|PRO4502 kirre like nephrin family adhesion molecule 3 protein-coding 228-2 chr1 80303135 80303373 + 1.33333 NA Intergenic Intergenic -232501 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 339-9 chr8 121132230 121132726 + 1.33333 NA Intergenic Intergenic -320432 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 333.166 chr4 84333504 84333957 + 1.33333 NA Intergenic L1MB8|LINE|L1 -34561 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 138-36 chr15 61189935 61190094 + 1.33333 NA intron (NM_134261, intron 1 of 10) L1ME3G|LINE|L1 39288 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 136.667-69 chr4 31160880 31161074 + 1.33333 NA Intergenic Intergenic -10167 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 329.333-6 chr3 70993400 70993870 + 1.33333 NA intron (NR_146142, intron 12 of 19) Kanga11a|DNA|TcMar-Tc2 71289 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 261.333-12 chr3 147275190 147275455 + 1.33333 NA Intergenic Intergenic 117108 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 233.666-6 chr4 129484085 129484371 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger 287250 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 119.333-118 chr9 30504213 30504336 + 1.33333 NA Intergenic Intergenic -95820 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 138-19 chr11 24300158 24300277 + 1.33333 NA Intergenic MER110A|LTR|ERV1 -196836 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 364.666-4 chr5 37472039 37472334 + 1.33333 NA intron (NM_001345998, intron 7 of 17) intron (NM_001345998, intron 7 of 17) 92868 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 237.333-41 chr8 139648779 139648988 + 1.33333 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 54240 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 237.5-29 chr8 49445971 49446245 + 1.33333 NA Intergenic Intergenic 66072 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 191.667-34 chr3 64499852 64500073 + 1.33333 NA Intergenic MamRep1151|LTR?|LTR? -61384 NR_110151 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 183-31 chr20 19739911 19740202 + 1.33333 NA Intergenic Intergenic -146465 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 174.5-4 chr1 198842978 198843355 + 1.33333 NA intron (NR_040073, intron 2 of 2) intron (NR_040073, intron 2 of 2) 15816 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 166-11 chr10 48540137 48540292 + 1.33333 NA intron (NR_144642, intron 3 of 9) intron (NR_144642, intron 3 of 9) -28625 NR_146782 100689073 Hs.667964 NR_146782 ARHGAP22-IT1 - ARHGAP22 intronic transcript 1 ncRNA 118.333-114 chr8 79061731 79061872 + 1.33333 NA Intergenic Intergenic 224272 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 269.667-13 chr2 104400397 104400829 + 1.33333 NA intron (NR_037885, intron 1 of 2) intron (NR_037885, intron 1 of 2) 7719 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 138.5-62 chr6 65401446 65401574 + 1.33333 NA intron (NM_198283, intron 6 of 9) intron (NM_198283, intron 6 of 9) 100092 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 264.667-11 chr16 76373747 76374234 + 1.33333 NA intron (NR_136213, intron 3 of 23) intron (NR_136213, intron 3 of 23) 64138 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 254.333-17 chr8 89648901 89649224 + 1.33333 NA Intergenic L1M2c|LINE|L1 108649 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 150-9 chr11 4071671 4071827 + 1.33333 NA intron (NM_001277962, intron 6 of 12) MIRb|SINE|MIR -22936 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 167.333-8 chr10 52576116 52576248 + 1.33333 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -105649 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 294.667-11 chr5 163475220 163475654 + 1.33333 NA intron (NM_012484, intron 10 of 17) intron (NM_012484, intron 10 of 17) 14805 NM_001142557 3161 Hs.740467 NM_012484 ENSG00000072571 HMMR CD168|IHABP|RHAMM hyaluronan mediated motility receptor protein-coding 384.999-3 chr4 72221706 72222074 + 1.33333 NA Intergenic LTR90B|LTR|LTR 182758 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 182.333-60 chr6 131019810 131020048 + 1.33333 NA intron (NM_001135554, intron 1 of 14) intron (NM_001135554, intron 1 of 14) -6320 NM_001350309 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 387.333-3 chr2 218941156 218941496 + 1.33333 NA Intergenic AluJb|SINE|Alu -10689 NR_110238 101928537 Hs.611129 NR_110238 ENSG00000228135 LINC01494 - long intergenic non-protein coding RNA 1494 ncRNA 363.333-5 chr19 56836203 56836503 + 1.33333 NA intron (NR_161476, intron 1 of 3) intron (NR_161476, intron 1 of 3) 1455 NM_001369733 5178 Hs.731875 NM_006210 ENSG00000198300 PEG3 PW1|ZKSCAN22|ZNF904|ZSCAN24 paternally expressed 3 protein-coding 285.999 chr12 6554383 6554637 + 1.33333 NA intron (NR_036467, intron 1 of 9) intron (NR_036467, intron 1 of 9) 1532 NR_036467 25900 Hs.15243 NM_015438 ENSG00000010295 IFFO1 HOM-TES-103|IFFO intermediate filament family orphan 1 protein-coding 309.333-6 chr2 179509951 179510418 + 1.33333 NA intron (NR_148056, intron 5 of 9) intron (NR_148056, intron 5 of 9) 52404 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 221.833-3 chr11 102343307 102343505 + 1.33333 NA Intergenic MER31B|LTR|ERV1 -3776 NM_001166 329 Hs.696238 NM_001166 ENSG00000110330 BIRC2 API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1 baculoviral IAP repeat containing 2 protein-coding 383.666 chr7 137444060 137444470 + 1.33333 NA intron (NM_001321710, intron 27 of 32) intron (NM_001321710, intron 27 of 32) -100532 NM_002825 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 365.666 chr7 114071334 114071840 + 1.33333 NA Intergenic L1MD2|LINE|L1 -14740 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 303.333-10 chr3 88418105 88418509 + 1.33333 NA intron (NM_001368168, intron 2 of 2) intron (NM_001368168, intron 2 of 2) 79851 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 231.333-17 chr19 28925688 28925924 + 1.33333 NA Intergenic Intergenic -39325 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 154-72 chr7 95047853 95048019 + 1.33333 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 138038 NM_001166162 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 293.333-17 chr8 104071811 104072135 + 1.33333 NA intron (NR_145711, intron 17 of 21) intron (NR_145711, intron 17 of 21) -151362 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 151.5-14 chr10 72891726 72891999 + 1.33333 NA Intergenic L1MC5a|LINE|L1 -1877 NM_152635 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 255.333-31 chr9 31293457 31293705 + 1.33333 NA Intergenic L1PA16|LINE|L1 87909 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 200.333-10 chr15 47496385 47496620 + 1.33333 NA intron (NM_001198999, intron 3 of 19) intron (NM_001198999, intron 3 of 19) -221003 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 330.667-8 chr2 107965289 107965805 + 1.33333 NA Intergenic Intergenic -20977 NM_021815 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 334.666 chr11 63296624 63296938 + 1.33333 NA intron (NM_001039752, intron 2 of 9) intron (NM_001039752, intron 2 of 9) 6878 NM_001039752 387775 Hs.188982 NM_001039752 ENSG00000184999 SLC22A10 OAT5|hOAT5 solute carrier family 22 member 10 protein-coding 306-10 chr2 232029234 232029501 + 1.33333 NA intron (NR_046477, intron 4 of 18) intron (NR_046477, intron 4 of 18) 67654 NR_046477 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 218.666-3 chr20 17213848 17214079 + 1.33333 NA Intergenic Intergenic -12144 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 153.833-67 chr9 78513620 78513954 + 1.33333 NA Intergenic L1ME3|LINE|L1 216662 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 225.833-21 chr9 70590379 70590655 + 1.33333 NA intron (NM_001366143, intron 21 of 25) intron (NM_001366143, intron 21 of 25) -175860 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 195.333-6 chr10 87103673 87103932 + 1.33333 NA intron (NM_001330112, intron 2 of 9) intron (NM_001330112, intron 2 of 9) 8596 NM_019054 54537 Hs.500419 NM_019054 ENSG00000122376 SHLD2 FAM35A|FAM35A1|RINN2|bA163M19.1 shieldin complex subunit 2 protein-coding 141.666-2 chr21 29639799 29639966 + 1.33333 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 43842 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 184.166 chr17 53308824 53309034 + 1.33333 NA Intergenic L1M3|LINE|L1 323424 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 250.666-6 chr5 165926292 165926517 + 1.33333 NA Intergenic Intergenic 999966 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 180-59 chr8 137525249 137525499 + 1.33333 NA Intergenic Intergenic -111786 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 260.334 chr11 78320408 78320785 + 1.33333 NA intron (NM_080491, intron 1 of 9) AluJb|SINE|Alu 21284 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 209.333-8 chr12 16303148 16303468 + 1.33333 NA Intergenic Intergenic -25623 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 151-8 chr10 109113923 109114077 + 1.33333 NA Intergenic Intergenic 809246 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 239.333-2 chr1 208901853 208902149 + 1.33333 NA Intergenic AluSx|SINE|Alu -70453 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 251.833-7 chr4 36016597 36017121 + 1.33333 NA intron (NR_146893, intron 35 of 36) intron (NR_146893, intron 35 of 36) 227080 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 246-13 chr2 205457134 205457366 + 1.33333 NA intron (NM_057177, intron 19 of 21) L1MD2|LINE|L1 -225250 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 226.333-4 chr11 60487686 60488007 + 1.33333 NA Intergenic L1MA9|LINE|L1 -4932 NM_017716 54860 Hs.272789 NM_017716 ENSG00000071203 MS4A12 Ms4a10 membrane spanning 4-domains A12 protein-coding 205.667-61 chr8 133684694 133684976 + 1.33333 NA promoter-TSS (NR_134462) promoter-TSS (NR_134462) -769 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 116.666 chr1 165669707 165669882 + 1.33333 NA intron (NM_001365774, intron 6 of 10) intron (NM_001365774, intron 6 of 10) 28768 NM_001365774 223 Hs.2533 NM_000696 ENSG00000143149 ALDH9A1 ALDH4|ALDH7|ALDH9|E3|TMABADH aldehyde dehydrogenase 9 family member A1 protein-coding 146.667-46 chr18 31779067 31779243 + 1.33333 NA Intergenic L1M4a1|LINE|L1 -18275 NM_001034172 147407 Hs.567708 NM_001034172 ENSG00000141437 SLC25A52 MCART2 solute carrier family 25 member 52 protein-coding 171.666-3 chr6 94922481 94922654 + 1.33333 NA Intergenic Intergenic 654884 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 206.666-2 chr14 88888154 88888380 + 1.33333 NA Intergenic L1ME1|LINE|L1 63616 NM_001366535 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 242.667 chr1 70568367 70568700 + 1.33333 NA Intergenic MLT1I|LTR|ERVL-MaLR -137920 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 130.334-4 chr3 164653969 164654154 + 1.33333 NA Intergenic Intergenic 177419 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 284-3 chr14 65601796 65602099 + 1.33333 NA intron (NM_178156, intron 2 of 9) intron (NM_178156, intron 2 of 9) 130845 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 190-27 chr2 53162264 53162512 + 1.33333 NA Intergenic Intergenic -459773 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 205-34 chr5 60939652 60939957 + 1.33333 NA intron (NM_001007234, intron 1 of 5) L1MEj|LINE|L1 5266 NM_001007234 1161 Hs.435237 NM_000082 ENSG00000049167 ERCC8 CKN1|CSA|UVSS2 ERCC excision repair 8, CSA ubiquitin ligase complex subunit protein-coding 147.333-101 chr9 112229611 112229725 + 1.33333 NA intron (NM_001244896, intron 9 of 12) intron (NM_001244896, intron 9 of 12) -54371 NM_022486 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 351.333-7 chr4 40978402 40978808 + 1.33333 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -121413 NM_001166053 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 208.666-2 chr2 21799310 21799516 + 1.33333 NA Intergenic MLT1A|LTR|ERVL-MaLR -88761 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 256-6 chr2 4295379 4295750 + 1.33333 NA Intergenic Intergenic 321403 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 243.166 chr12 17173924 17174183 + 1.33333 NA Intergenic L1MEf|LINE|L1 185306 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 136-64 chr5 32860767 32860912 + 1.33333 NA Intergenic L1PA16|LINE|L1 -86604 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 155-21 chr12 116290748 116291180 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -13778 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 326.666-5 chr8 47140481 47141009 + 1.33333 NA Intergenic MER89-int|LTR|ERV1 -48562 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 317.5-11 chr4 51829021 51829586 + 1.33333 NA Intergenic L1M4|LINE|L1 -13697 NM_001287757 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 373.499 chr16 48255622 48256053 + 1.33333 NA intron (NM_001300948, intron 2 of 13) THE1B|LTR|ERVL-MaLR -8298 NM_001370497 85320 Hs.652267 NM_032583 ENSG00000121270 ABCC11 EWWD|MRP8|WW ATP binding cassette subfamily C member 11 protein-coding 218.333-5 chr10 92879376 92879548 + 1.33333 NA intron (NM_001319195, intron 1 of 21) AluJr|SINE|Alu 30942 NM_019053 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 134.166-3 chr6 72301752 72301878 + 1.33333 NA intron (NM_001350414, intron 17 of 24) MER2|DNA|TcMar-Tigger -64931 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 348.666-5 chr2 151652103 151652410 + 1.33333 NA intron (NM_001271208, intron 52 of 182) AluJb|SINE|Alu 82220 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 297.001 chr11 41528046 41528466 + 1.33333 NA Intergenic Intergenic -68604 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 144.166-2 chr16 12997842 12997986 + 1.33333 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 96316 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 266.333-2 chr12 97000919 97001318 + 1.33333 NA Intergenic Intergenic 93652 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 232-16 chr19 42031204 42031484 + 1.33333 NA intron (NM_002088, intron 11 of 18) ERVL-E-int|LTR|ERVL 34461 NM_002088 2901 Hs.367799 NM_002088 ENSG00000105737 GRIK5 EAA2|GRIK2|GluK5|KA2 glutamate ionotropic receptor kainate type subunit 5 protein-coding 331.166 chr10 51215349 51216085 + 1.33333 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -83856 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 175.333-49 chr5 44024917 44025059 + 1.33333 NA Intergenic Intergenic -363744 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 228.333-15 chr2 88487099 88487336 + 1.33333 NA Intergenic AluSx|SINE|Alu -34524 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 408.332 chr3 132519316 132519694 + 1.33333 NA intron (NM_001329126, intron 49 of 56) L1MB8|LINE|L1 -77765 NM_016557 51554 Hs.310512 NM_016557 ENSG00000129048 ACKR4 CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1 atypical chemokine receptor 4 protein-coding 256.666-5 chr8 92163363 92163652 + 1.33333 NA Intergenic L1M5|LINE|L1 -60122 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 177.5-22 chr13 61408715 61408901 + 1.33333 NA TTS (NM_022843) TTS (NM_022843) 6714 NM_022843 64881 Hs.391781 NM_022843 ENSG00000280165 PCDH20 PCDH13 protocadherin 20 protein-coding 114.333-103 chr5 109996601 109996936 + 1.33333 NA Intergenic Intergenic 113586 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 180.833-35 chr4 79552328 79552655 + 1.33333 NA intron (NR_038826, intron 3 of 3) MER67D|LTR|ERV1 59898 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 166-44 chr4 65696270 65696488 + 1.33333 NA Intergenic Intergenic -25884 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 280.167-8 chr4 22928330 22928607 + 1.33333 NA Intergenic Intergenic 214379 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 501.166 chr8 26013891 26014518 + 1.33333 NA intron (NM_022659, intron 6 of 15) intron (NM_022659, intron 6 of 15) 31209 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 207-2 chr1 156748241 156748547 + 1.33333 NA intron (NM_001319186, intron 1 of 5) intron (NM_001319186, intron 1 of 5) 2899 NM_001319187 3068 Hs.743948 NM_004494 ENSG00000143321 HDGF HMG1L2 heparin binding growth factor protein-coding 277.667-6 chr2 68819771 68820035 + 1.33333 NA intron (NM_001007231, intron 9 of 10) intron (NM_001007231, intron 9 of 10) 44993 NM_001166276 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 299.666-4 chr5 59703428 59703665 + 1.33333 NA TTS (NR_030308) TTS (NR_030308) 157 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 287.499 chr10 82829835 82830079 + 1.33333 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -597037 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 210.667-10 chr11 113724555 113724856 + 1.33333 NA Intergenic MIRb|SINE|MIR -18332 NR_110046 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 235.667-16 chr3 47630327 47630647 + 1.33333 NA intron (NM_003074, intron 24 of 27) intron (NM_003074, intron 24 of 27) 31207 NR_145791 109623484 NR_145791 SNORD146 - small nucleolar RNA, C/D box 146 snoRNA 167.833-24 chr17 65178249 65178444 + 1.33333 NA intron (NM_003835, intron 9 of 18) intron (NM_003835, intron 9 of 18) 40976 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 353.834-2 chr20 42139266 42139676 + 1.33333 NA intron (NM_133170, intron 19 of 31) LTR16C|LTR|ERVL -521094 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 187.667-41 chr5 40988462 40988708 + 1.33333 NA Intergenic L1MEc|LINE|L1 79088 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 129.334 chr11 95856732 95856910 + 1.33333 NA intron (NM_001243571, intron 10 of 17) intron (NM_001243571, intron 10 of 17) 66323 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 239.5 chr1 45255130 45255418 + 1.33333 NA Intergenic LTR8B|LTR|ERV1 -48636 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 138.667-46 chr2 95555088 95555246 + 1.33333 NA Intergenic Intergenic -36834 NM_138800 129868 Hs.232026 NM_138800 ENSG00000144015 TRIM43 TRIM43A tripartite motif containing 43 protein-coding 421.333 chr6 131977480 131978004 + 1.33333 NA Intergenic Intergenic -26370 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 326-2 chr12 62674654 62675085 + 1.33333 NA intron (NM_020700, intron 8 of 9) intron (NM_020700, intron 8 of 9) 71183 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 303.167-2 chr10 34531654 34532159 + 1.33333 NA intron (NM_001184789, intron 2 of 22) Tigger2|DNA|TcMar-Tigger 283390 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 144.833-42 chr21 28926985 28927104 + 1.33333 NA Intergenic Intergenic -41671 NR_047510 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 212.333-7 chr11 127357539 127357722 + 1.33333 NA Intergenic L1MEd|LINE|L1 86560 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 215.5-5 chr10 42808500 42808702 + 1.33333 NA intron (NM_014753, intron 13 of 22) L1MD2|LINE|L1 25806 NM_014753 9790 Hs.10848 NM_014753 ENSG00000165733 BMS1 ACC|BMS1L BMS1 ribosome biogenesis factor protein-coding 115.5-55 chr2 178025285 178025427 + 1.33333 NA intron (NM_001077197, intron 2 of 20) intron (NM_001077197, intron 2 of 20) 47421 NM_016953 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 253.333-19 chr5 102417532 102417826 + 1.33333 NA intron (NM_001308014, intron 3 of 8) L1ME1|LINE|L1 81322 NM_001289002 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 298.666-2 chr7 53482895 53483244 + 1.33333 NA Intergenic MLT1H2|LTR|ERVL-MaLR 328862 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 305.999 chr16 29953741 29954034 + 1.33333 NA Intergenic L1M3|LINE|L1 -8192 NM_001369689 124446 Hs.460574 NM_194280 ENSG00000149932 TMEM219 IGFBP-3R transmembrane protein 219 protein-coding 369.166 chr10 65971147 65971461 + 1.33333 NA intron (NM_001127384, intron 16 of 17) L1PA16|LINE|L1 399879 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 211.667-18 chr2 21415183 21415608 + 1.33333 NA Intergenic Intergenic 291409 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 141.333-79 chr5 156997171 156997290 + 1.33333 NA Intergenic L1ME3G|LINE|L1 -34004 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 332.5-2 chr11 134226954 134227337 + 1.33333 NA intron (NM_052875, intron 1 of 5) MER20|DNA|hAT-Charlie 2474 NM_052875 112936 Hs.334684 NM_052875 ENSG00000151502 VPS26B Pep8b VPS26, retromer complex component B protein-coding 288.333-9 chr5 84680913 84681324 + 1.33333 NA Intergenic MER57D|LTR|ERV1 -296238 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 196.333-37 chr5 24219677 24219934 + 1.33333 NA Intergenic Intergenic 268457 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 158.333-17 chr11 104823713 104823870 + 1.33333 NA Intergenic Intergenic 74879 NR_034061 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 310.667-7 chr8 27358117 27358462 + 1.33333 NA intron (NM_173175, intron 1 of 29) intron (NM_173175, intron 1 of 29) 32725 NM_173175 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 476.666 chr8 112768507 112769384 + 1.33333 NA intron (NM_001363185, intron 11 of 66) intron (NM_001363185, intron 11 of 66) 125452 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 261.333-22 chr6 157863285 157863958 + 1.33333 NA intron (NM_016224, intron 1 of 17) intron (NM_016224, intron 1 of 17) 40375 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 375-4 chr6 142802888 142803410 + 1.33333 NA intron (NM_006734, intron 2 of 9) intron (NM_006734, intron 2 of 9) 142027 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 254.333-5 chr12 62796251 62796495 + 1.33333 NA intron (NM_020700, intron 3 of 9) MER21B|LTR|ERVL 138777 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 278.333-13 chr5 23820074 23820354 + 1.33333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -131134 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 127.833-61 chr5 123787997 123788140 + 1.33333 NA Intergenic Intergenic 242651 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 180.667-32 chr2 14019341 14019610 + 1.33333 NA Intergenic Intergenic 381483 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 219.166-2 chr7 103627879 103628207 + 1.33333 NA intron (NM_005045, intron 20 of 64) intron (NM_005045, intron 20 of 64) -181836 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 195.333-33 chr3 35606822 35607073 + 1.33333 NA Intergenic HAL1b|LINE|L1 -32578 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 286.5-13 chr4 32823865 32824182 + 1.33333 NA Intergenic MER4-int|LTR|ERV1 472985 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 181-50 chr5 22735508 22735687 + 1.33333 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 117747 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 206.833-20 chr4 81968138 81968419 + 1.33333 NA Intergenic L1MA8|LINE|L1 405713 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 212-33 chr7 39093996 39094278 + 1.33333 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -80570 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 192.666-6 chr7 87446421 87446687 + 1.33333 NA intron (NM_018849, intron 9 of 27) intron (NM_018849, intron 9 of 27) 29126 NM_000443 5244 Hs.654403 NM_000443 ENSG00000005471 ABCB4 ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3 ATP binding cassette subfamily B member 4 protein-coding 203.333-2 chr1 95632519 95632695 + 1.33333 NA Intergenic Intergenic 122491 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 272.833-9 chr6 121480175 121480590 + 1.33333 NA Intergenic L2|LINE|L2 44736 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 350.166 chr8 137792230 137792682 + 1.33333 NA Intergenic MIR|SINE|MIR 291089 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 200-11 chr11 72723879 72724145 + 1.33333 NA intron (NM_001040118, intron 3 of 34) intron (NM_001040118, intron 3 of 34) -1654 NM_001135190 116985 Hs.503165 NM_015242 ENSG00000186635 ARAP1 CENTD2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding 180-52 chr7 114422029 114422247 + 1.33333 NA intron (NR_033767, intron 1 of 17) intron (NR_033767, intron 1 of 17) -4364 NM_148899 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 186 chr1 49367378 49367557 + 1.33333 NA intron (NR_136623, intron 2 of 12) MSTB|LTR|ERVL-MaLR 104618 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 328.334 chr12 25129212 25129655 + 1.33333 NA intron (NR_147910, intron 7 of 11) intron (NR_147910, intron 7 of 11) 65727 NM_001352067 55259 Hs.407771 NM_018272 ENSG00000118307 CASC1 LAS1|PPP1R54 cancer susceptibility 1 protein-coding 235.333-9 chr16 14368117 14368395 + 1.33333 NA intron (NR_131191, intron 1 of 1) intron (NR_131191, intron 1 of 1) 2010 NR_131191 105447648 Hs.554151 NR_131191 ENSG00000260009 LINC02130 - long intergenic non-protein coding RNA 2130 ncRNA 214.333-44 chr8 107932386 107932702 + 1.33333 NA intron (NM_001282863, intron 4 of 4) intron (NM_001282863, intron 4 of 4) 149395 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 234.334 chr10 88823355 88823620 + 1.33333 NA intron (NM_144590, intron 4 of 5) intron (NM_144590, intron 4 of 5) 20757 NM_001128215 340654 Hs.55118 NM_001128215 ENSG00000173239 LIPM LIPL3|bA304I5.1 lipase family member M protein-coding 196-33 chr2 89819711 89819952 + 1.33333 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -181924 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 224.666-8 chr3 121308559 121308735 + 1.33333 NA intron (NM_001348343, intron 20 of 27) L1M4b|LINE|L1 237341 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 124.833-15 chr11 124630403 124630581 + 1.33333 NA intron (NM_032811, intron 6 of 8) intron (NM_032811, intron 6 of 8) 7628 NM_032811 84897 Hs.436410 NM_032811 ENSG00000154144 TBRG1 NIAM|TB-5 transforming growth factor beta regulator 1 protein-coding 306.333-6 chr6 56004946 56005390 + 1.33333 NA Intergenic Intergenic 86494 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 324.5-4 chr4 66424464 66425142 + 1.33333 NA Intergenic L1M1|LINE|L1 147979 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 167.333-5 chr1 189673136 189673338 + 1.33333 NA Intergenic Intergenic 802773 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 227.666-6 chr6 113604487 113604686 + 1.33333 NA Intergenic Intergenic 45489 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 387.667-4 chr6 38376553 38377074 + 1.33333 NA intron (NM_052893, intron 7 of 11) intron (NM_052893, intron 7 of 11) -104783 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 236.333-6 chr12 2515860 2516197 + 1.33333 NA intron (NM_199460, intron 9 of 49).2 L2a|LINE|L2 156192 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 243.999 chr12 4097324 4097532 + 1.33333 NA Intergenic Intergenic -176334 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 249.333-22 chr5 96254177 96254461 + 1.33333 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 175181 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 211.333-21 chr17 74672522 74672768 + 1.33333 NA intron (NM_175738, intron 1 of 8) MIRc|SINE|MIR 1514 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 192.833-3 chr1 96768630 96768902 + 1.33333 NA intron (NM_001300985, intron 3 of 13) intron (NM_001300985, intron 3 of 13) 46128 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 196.333-5 chr12 2591073 2591307 + 1.33333 NA intron (NM_199460, intron 18 of 49).2 intron (NM_199460, intron 18 of 49).2 81030 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 278-13 chr4 105256002 105256350 + 1.33333 NA intron (NM_001127208, intron 6 of 10) L1MC1|LINE|L1 96705 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 208-7 chr13 104744561 104744779 + 1.33333 NA Intergenic Intergenic -721197 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 161.5-26 chr2 157736445 157736953 + 1.33333 NA 3' UTR (NM_001105, exon 11 of 11) 3' UTR (NM_001105, exon 11 of 11) 101931 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 443.166-2 chr5 165729178 165729578 + 1.33333 NA Intergenic Intergenic 1196992 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 258.833-10 chr2 79251168 79251405 + 1.33333 NA Intergenic Intergenic -91533 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 266.5-5 chr14 66352557 66352911 + 1.33333 NA Intergenic L1MA8|LINE|L1 -133637 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 354-2 chr5 8606056 8606435 + 1.33333 NA Intergenic Intergenic 145320 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 332.5-3 chr12 90826329 90826688 + 1.33333 NA Intergenic Tigger16b|DNA|TcMar-Tigger -91515 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 139.5-19 chr15 100967610 100967814 + 1.33333 NA intron (NM_024652, intron 2 of 33) L1ME2z|LINE|L1 48355 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 140.666-2 chr15 98181572 98181715 + 1.33333 NA Intergenic Intergenic -92890 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 333.166-2 chr7 25265730 25266241 + 1.33333 NA Intergenic Intergenic -37499 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 371.833-3 chr5 8250236 8250683 + 1.33333 NA Intergenic L2|LINE|L2 207105 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 272.166-3 chr17 77516949 77517263 + 1.33333 NA Intergenic MLT1F|LTR|ERVL-MaLR -9895 NR_148967 400622 Hs.514516 NR_148967 LOC400622 - uncharacterized LOC400622 ncRNA 260.666-8 chr9 28753529 28753829 + 1.33333 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -34374 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 229.834-5 chr21 44816114 44816392 + 1.33333 NA intron (NM_006936, intron 1 of 3) intron (NM_006936, intron 1 of 3) 1809 NM_006936 6612 Hs.474005 NM_006936 ENSG00000184900 SUMO3 SMT3A|SMT3H1|SUMO-3|Smt3B small ubiquitin like modifier 3 protein-coding 251.5-28 chr9 73720251 73720696 + 1.33333 NA Intergenic L1MC4|LINE|L1 568608 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 206.667-23 chr18 7315479 7315747 + 1.33333 NA Intergenic Intergenic 84509 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 363.833-3 chr2 234260687 234261083 + 1.33333 NA Intergenic Intergenic 193710 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 172-64 chr7 12126623 12126825 + 1.33333 NA Intergenic Intergenic -84570 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 182.333-62 chr7 26232397 26232556 + 1.33333 NA Intergenic AluSz6|SINE|Alu 30731 NM_016587 11335 Hs.381189 NM_007276 ENSG00000122565 CBX3 HECH|HP1-GAMMA|HP1Hs-gamma chromobox 3 protein-coding 185.333-33 chr2 169755423 169755673 + 1.33333 NA Intergenic LTR38A1|LTR|ERV1 21716 NM_144711 151230 Hs.655150 NM_144711 ENSG00000213160 KLHL23 DITHP kelch like family member 23 protein-coding 238.666-4 chr3 104002686 104002947 + 1.33333 NA Intergenic L1MD|LINE|L1 -478700 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 269.5-15 chr4 30674603 30675119 + 1.33333 NA Intergenic AluJb|SINE|Alu -45508 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 319.167-6 chr8 124026452 124026922 + 1.33333 NA intron (NM_001039112, intron 18 of 40) intron (NM_001039112, intron 18 of 40) 14095 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 171.333-48 chr4 38040957 38041172 + 1.33333 NA intron (NM_001253912, intron 8 of 20) intron (NM_001253912, intron 8 of 20) -69117 NM_001253913 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 154.166-3 chrX 101674381 101674496 + 1.33333 NA Intergenic L2|LINE|L2 -14588 NM_001282231 9823 Hs.48924 NM_014782 ENSG00000184867 ARMCX2 ALEX2|GASP9 armadillo repeat containing X-linked 2 protein-coding 116-82 chr6 48092074 48092164 + 1.33333 NA Intergenic Intergenic -23430 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 521.666 chr10 107041063 107041530 + 1.33333 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 123410 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 241.667-12 chr15 63468503 63468806 + 1.33333 NA Intergenic MLT1L|LTR|ERVL-MaLR -35857 NM_001256702 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 229.666-2 chr18 5144890 5145263 + 1.33333 NA 3' UTR (NM_001330553, exon 2 of 2) 3' UTR (NM_001330553, exon 2 of 2) 52181 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 134.167-80 chr8 55770098 55770258 + 1.33333 NA intron (NM_001286660, intron 1 of 2) intron (NM_001286660, intron 1 of 2) 3200 NM_001286661 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 251.999 chr2 76275818 76276041 + 1.33333 NA Intergenic Intergenic -565014 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 370-2 chr12 92565996 92566315 + 1.33333 NA Intergenic MIRb|SINE|MIR 99476 NR_144532 100507616 Hs.339918 NR_144532 LINC02397 - long intergenic non-protein coding RNA 2397 ncRNA 265.666-2 chr2 145675054 145675383 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger -911839 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 305.666 chr10 126941026 126941405 + 1.33333 NA intron (NM_001290223, intron 1 of 51) intron (NM_001290223, intron 1 of 51) 35806 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 527.999 chr12 24824363 24824945 + 1.33333 NA intron (NM_001178091, intron 9 of 9) intron (NM_001178091, intron 9 of 9) 77568 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 260.333-17 chr6 37352467 37352816 + 1.33333 NA Intergenic A-rich|Low_complexity|Low_complexity -1342 NM_003958 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 177.5-74 chr7 17221659 17221919 + 1.33333 NA Intergenic L1MB8|LINE|L1 -76863 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 291-9 chr3 72627491 72627887 + 1.33333 NA Intergenic Intergenic 36560 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 447.166 chr4 102156620 102157050 + 1.33333 NA Intergenic Intergenic 167477 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 161.333-50 chr3 177480080 177480221 + 1.33333 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 38229 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 256.667-3 chr1 183543993 183544271 + 1.33333 NA intron (NM_001174061, intron 13 of 21) intron (NM_001174061, intron 13 of 21) 46472 NM_001190789 4688 Hs.587558 NM_000433 ENSG00000116701 NCF2 NCF-2|NOXA2|P67-PHOX|P67PHOX neutrophil cytosolic factor 2 protein-coding 360-4 chr14 65483516 65484052 + 1.33333 NA intron (NM_004480, intron 2 of 9) AluSz|SINE|Alu 12682 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 182.333-53 chr5 23560803 23560966 + 1.33333 NA Intergenic L1ME3A|LINE|L1 53229 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 325.333 chr1 219172917 219173259 + 1.33333 NA promoter-TSS (NM_138794) promoter-TSS (NM_138794) 700 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 268.666-4 chr7 95840505 95840891 + 1.33333 NA intron (NM_004411, intron 5 of 16) L1M3de|LINE|L1 68192 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 306.666 chr5 117200052 117200352 + 1.33333 NA Intergenic MIRb|SINE|MIR -215310 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 298.666 chr2 21929778 21930012 + 1.33333 NA Intergenic Intergenic -219243 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 306.667-5 chr4 126151141 126151524 + 1.33333 NA Intergenic L1ME2z|LINE|L1 644073 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 435-3 chr10 82577087 82577736 + 1.33333 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -344491 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 204.667-3 chr1 161153340 161153633 + 1.33333 NA promoter-TSS (NM_016406) promoter-TSS (NM_016406) -492 NM_016406 51506 Hs.301412 NM_016406 ENSG00000143222 UFC1 HSPC155|NEDSG ubiquitin-fold modifier conjugating enzyme 1 protein-coding 333.5-5 chr7 39585547 39586130 + 1.33333 NA intron (NM_001282446, intron 2 of 2) AluJb|SINE|Alu 19434 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 276.333-19 chr6 140089207 140089456 + 1.33333 NA intron (NR_121622, intron 3 of 3) intron (NR_121622, intron 3 of 3) -98070 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 234-30 chr5 72479090 72479380 + 1.33333 NA intron (NM_152625, intron 1 of 4) intron (NM_152625, intron 1 of 4) 28175 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 439 chr5 125180870 125181403 + 1.33333 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 144305 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 208.666 chr10 98686982 98687162 + 1.33333 NA intron (NM_021828, intron 6 of 11) L1ME2z|LINE|L1 237496 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 174.667-12 chr11 131305583 131305888 + 1.33333 NA Intergenic Intergenic -64880 NM_001352003 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 170.5-41 chr21 28340741 28340931 + 1.33333 NA Intergenic Intergenic -112169 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 410.666 chr18 67772128 67772571 + 1.33333 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) 42473 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 253.667-4 chr14 36470950 36471399 + 1.33333 NA Intergenic Intergenic 42361 NR_161362 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 382.333-6 chr6 147161016 147161661 + 1.33333 NA intron (NR_132442, intron 1 of 2) intron (NR_132442, intron 1 of 2) 2413 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 254.666 chr1 69202368 69202588 + 1.33333 NA Intergenic L1MA4A|LINE|L1 146580 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 226.667-14 chr17 67617713 67618028 + 1.33333 NA intron (NM_181671, intron 5 of 9) MLT1C|LTR|ERVL-MaLR -99963 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 214-32 chr5 4273152 4273328 + 1.33333 NA Intergenic Intergenic -500241 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 229-26 chr3 18745246 18745546 + 1.33333 NA Intergenic Intergenic -299804 NM_001322872 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 224-23 chr2 76038981 76039253 + 1.33333 NA Intergenic Intergenic -328202 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 155.5-25 chr18 33429998 33430326 + 1.33333 NA intron (NM_001308126, intron 2 of 23) intron (NM_001308126, intron 2 of 23) 10409 NM_001371121 295.666-2 chr22 47069232 47069485 + 1.33333 NA intron (NM_001284305, intron 11 of 12) intron (NM_001284305, intron 11 of 12) -153316 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 324.667-2 chr14 50789165 50789627 + 1.33333 NA intron (NM_016350, intron 5 of 28) AluSg7|SINE|Alu -32401 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 195.333-61 chr8 130527335 130527542 + 1.33333 NA Intergenic Intergenic -83764 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 130.667-70 chr4 162779164 162779410 + 1.33333 NA Intergenic Intergenic 314341 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 250-19 chr5 12366361 12366728 + 1.33333 NA Intergenic L1MEd|LINE|L1 -208313 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 316.333 chr1 107101215 107101777 + 1.33333 NA Intergenic L2c|LINE|L2 -38592 NM_014917 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 142.333-90 chr6 145421739 145421856 + 1.33333 NA Intergenic Intergenic 265080 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 176.333-61 chr8 132748735 132749102 + 1.33333 NA intron (NM_001364885, intron 4 of 9) MIR|SINE|MIR 11664 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 195-25 chr20 57207469 57207675 + 1.33333 NA intron (NM_001719, intron 2 of 6) L1ME4b|LINE|L1 -6124 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 219.666 chr12 81735864 81736081 + 1.33333 NA intron (NM_003625, intron 3 of 32) L1MB8|LINE|L1 22535 NM_001220475 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 331.5-7 chr7 70725414 70725991 + 1.33333 NA intron (NM_015570, intron 6 of 18) intron (NM_015570, intron 6 of 18) -406442 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 224-6 chr10 113355435 113355663 + 1.33333 NA Intergenic MIRb|SINE|MIR -195282 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 156.5-47 chr2 89836361 89836600 + 1.33333 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -198573 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 242.833-10 chr5 157677895 157678247 + 1.33333 NA intron (NM_001145132, intron 2 of 2) MER5A|DNA|hAT-Charlie 6538 NM_001145132 100190949 Hs.720862 NM_001145132 ENSG00000187658 C5orf52 - chromosome 5 open reading frame 52 protein-coding 162-43 chr21 29604734 29604940 + 1.33333 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 8797 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 454.166-2 chr10 76681187 76681738 + 1.33333 NA Intergenic Intergenic -206582 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 191.666-3 chr9 105016154 105016362 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR -88103 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 150.667-42 chr17 63030691 63030883 + 1.33333 NA intron (NM_025185, intron 2 of 25) MLT1L|LTR|ERVL-MaLR 64552 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 202.333-40 chr6 57263884 57264122 + 1.33333 NA promoter-TSS (NR_109774) promoter-TSS (NR_109774) -657 NR_109774 100506188 Hs.485640 NR_109774 LOC100506188 - uncharacterized LOC100506188 ncRNA 166.666 chr20 55935313 55935487 + 1.33333 NA Intergenic Intergenic 70119 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 219.833-2 chr1 96823175 96823453 + 1.33333 NA non-coding (NR_125357, exon 13 of 13) non-coding (NR_125357, exon 13 of 13) 100676 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 336.666-4 chr3 22832631 22832964 + 1.33333 NA Intergenic Intergenic 369781 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 174.666 chr1 76048234 76048429 + 1.33333 NA Intergenic Intergenic -26415 NM_001160011 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 196-21 chr13 109674735 109674946 + 1.33333 NA Intergenic Intergenic -53434 NR_103846 101409253 Hs.578072 NR_103846 ENSG00000234854 LINC00676 - long intergenic non-protein coding RNA 676 ncRNA 346.333-5 chr21 29470472 29470924 + 1.33333 NA Intergenic Intergenic -25349 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 287.833-6 chr4 64299643 64299985 + 1.33333 NA intron (NM_001363796, intron 8 of 11) intron (NM_001363796, intron 8 of 11) 109636 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 307.833-6 chr2 216253181 216253683 + 1.33333 NA Intergenic LTR85b|LTR|Gypsy? 36543 NR_037701 150967 Hs.56876 NM_001199924 ENSG00000260804 LINC01963 PKI55 long intergenic non-protein coding RNA 1963 ncRNA 137.333-16 chr11 112442366 112442525 + 1.33333 NA Intergenic Intergenic -39787 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 144.833-61 chr5 118401480 118401629 + 1.33333 NA intron (NR_104610, intron 9 of 9) L1PA16|LINE|L1 118980 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 255.5-2 chr1 238134477 238134760 + 1.33333 NA Intergenic L2b|LINE|L2 -243696 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 140.333-45 chr21 45679476 45679614 + 1.33333 NA intron (NM_001348238, intron 2 of 16) Tigger1|DNA|TcMar-Tigger 10671 NM_001348241 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 213.167-36 chr9 75717150 75717484 + 1.33333 NA Intergenic Intergenic -173327 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 223.833-25 chr8 118103570 118104186 + 1.33333 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 7941 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 194-7 chr10 115334232 115334429 + 1.33333 NA exon (NM_207303, exon 19 of 29) exon (NM_207303, exon 19 of 29) 240965 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 289.999 chr1 190424084 190424319 + 1.33333 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 51809 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 273.5-4 chr11 48212713 48213040 + 1.33333 NA Intergenic Intergenic -3934 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 302-14 chr18 55195167 55195546 + 1.33333 NA Intergenic L2c|LINE|L2 -71050 NR_110743 101927229 Hs.638474 NR_110743 ENSG00000267013 LINC01929 - long intergenic non-protein coding RNA 1929 ncRNA 207.666-3 chr13 67964266 67964496 + 1.33333 NA Intergenic Intergenic 591994 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 215.666-4 chr8 141972866 141973221 + 1.33333 NA Intergenic Intergenic -186730 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 285.667-8 chr4 91702510 91703033 + 1.33333 NA Intergenic L1M4b|LINE|L1 574531 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 301.333-11 chr7 86707869 86708198 + 1.33333 NA intron (NM_001363522, intron 1 of 4) MIR|SINE|MIR 64119 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 270.167-3 chr10 89373685 89374118 + 1.33333 NA Intergenic MER5A1|DNA|hAT-Charlie -4155 NM_001010987 439996 Hs.500491 NM_001010987 ENSG00000204010 IFIT1B IFIT1L|bA149I23.6 interferon induced protein with tetratricopeptide repeats 1B protein-coding 521.333 chr8 92324867 92325604 + 1.33333 NA Intergenic L1ME3B|LINE|L1 -221850 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 150.666 chr12 47308164 47308345 + 1.33333 NA promoter-TSS (NR_135024) promoter-TSS (NR_135024) -855 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 302-8 chr10 23433736 23434042 + 1.33333 NA Intergenic Intergenic -5380 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 304.167-2 chr1 221902889 221903429 + 1.33333 NA Intergenic MER52D|LTR|ERV1 -62493 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 134.5-16 chr10 107894319 107894470 + 1.33333 NA intron (NR_125760, intron 4 of 4) L1MA9|LINE|L1 174899 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 148.167-77 chr7 48136853 48136974 + 1.33333 NA Intergenic MER51-int|LTR|ERV1 -34545 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 229-32 chr4 80169246 80169502 + 1.33333 NA Intergenic L1MB4|LINE|L1 -15896 NM_020226 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 263-3 chr10 53842975 53843341 + 1.33333 NA intron (NM_001354411, intron 29 of 34) HAL1b|LINE|L1 -643072 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 181.667-19 chr17 39320178 39320484 + 1.33333 NA intron (NM_001370209, intron 2 of 13) intron (NM_001370209, intron 2 of 13) 22931 NR_162098 113839521 NR_162098 MIR548BC - microRNA 548BC ncRNA 407.666 chr6 64017472 64018002 + 1.33333 NA intron (NM_001292009, intron 33 of 43) intron (NM_001292009, intron 33 of 43) 210901 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 309.667-5 chr9 73365348 73365766 + 1.33333 NA Intergenic L1MB7|LINE|L1 213692 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 230.833-19 chr5 94944483 94944808 + 1.33333 NA intron (NM_001297777, intron 3 of 19) intron (NM_001297777, intron 3 of 19) 137221 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 242.333-13 chr22 31798613 31798910 + 1.33333 NA intron (NR_146296, intron 14 of 42) MER41C|LTR|ERV1 44738 NM_001369903 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 148-17 chr10 87657595 87657748 + 1.33333 NA Intergenic MIR3|SINE|MIR -2207 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 346.333-3 chr16 87372336 87372691 + 1.33333 NA intron (NM_001282683, intron 2 of 9) intron (NM_001282683, intron 2 of 9) 11263 NM_024735 79791 Hs.567582 NM_024735 ENSG00000103264 FBXO31 FBX14|FBXO14|Fbx31|MRT45|pp2386 F-box protein 31 protein-coding 306-6 chr18 7841042 7841456 + 1.33333 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 273933 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 320-4 chr22 26459772 26460184 + 1.33333 NA intron (NR_146315, intron 12 of 14) intron (NR_146315, intron 12 of 14) 19510 NR_073136 89781 Hs.474436 NM_022081 ENSG00000100099 HPS4 BLOC3S2|LE HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 protein-coding 122.666-2 chr12 99627064 99627281 + 1.33333 NA intron (NM_152788, intron 9 of 25) intron (NM_152788, intron 9 of 25) -20581 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 287.333 chr1 119783337 119783772 + 1.33333 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -14622 NM_005518 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 472.166 chr20 41628776 41629326 + 1.33333 NA Intergenic L1PA16|LINE|L1 -10674 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 238.5-8 chr11 88372370 88372590 + 1.33333 NA Intergenic Intergenic -34744 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 314.666 chr1 214584423 214584793 + 1.33333 NA Intergenic AluSc5|SINE|Alu -18587 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 380-4 chr7 8228695 8229134 + 1.33333 NA intron (NM_001350836, intron 3 of 14) intron (NM_001350836, intron 3 of 14) 33138 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 162-34 chr2 63206691 63206864 + 1.33333 NA intron (NR_148705, intron 13 of 16) L1M8|LINE|L1 -87235 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 249.333-8 chr15 78992304 78992596 + 1.33333 NA intron (NM_001145648, intron 20 of 26) intron (NM_001145648, intron 20 of 26) 13210 NM_153815 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 252.833-6 chr15 94449728 94449994 + 1.33333 NA intron (NM_018349, intron 18 of 21) intron (NM_018349, intron 18 of 21) 93931 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 272.166-2 chr11 110018247 110018800 + 1.33333 NA Intergenic L2a|LINE|L2 -74869 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 300.666-4 chr15 64464967 64465247 + 1.33333 NA Intergenic Intergenic -34313 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 202.333-46 chr7 111218892 111219115 + 1.33333 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 127876 NM_018334 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 321.333-2 chr12 46701418 46701676 + 1.33333 NA Intergenic MamRep1527|LTR|LTR 124450 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 369.333-4 chr9 96592609 96593154 + 1.33333 NA intron (NR_147239, intron 1 of 14) intron (NR_147239, intron 1 of 14) -25905 NM_001351570 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 354.666 chr2 58422197 58422657 + 1.33333 NA Intergenic Intergenic -98326 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 284.5-8 chr21 31585980 31586273 + 1.33333 NA Intergenic Intergenic 26893 NM_001321023 150051 Hs.708976 NM_001321023 LOC150051 - uncharacterized LOC150051 protein-coding 280.5-9 chr5 83884946 83885392 + 1.33333 NA Intergenic MER97a|DNA|hAT-Tip100 -164314 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 210.333-39 chr7 13473337 13473520 + 1.33333 NA Intergenic MSTB1|LTR|ERVL-MaLR 513086 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 282.834-4 chr5 89467840 89468383 + 1.33333 NA TTS (NR_136218) TTS (NR_136218) 548609 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 311.334-4 chr2 180815240 180815724 + 1.33333 NA intron (NR_104324, intron 3 of 4) AluJr|SINE|Alu 123378 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 265-10 chr15 56714233 56714612 + 1.33333 NA intron (NM_001002843, intron 1 of 20) intron (NM_001002843, intron 1 of 20) 19664 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 319.333-10 chr8 121235857 121236278 + 1.33333 NA Intergenic AluJr4|SINE|Alu -403279 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 158.666 chr1 119185689 119185828 + 1.33333 NA intron (NR_125975, intron 4 of 6) L1M2|LINE|L1 -45086 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 194.666-5 chr2 64010831 64011008 + 1.33333 NA intron (NM_001005739, intron 1 of 22) intron (NM_001005739, intron 1 of 22) 8509 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 221.333-24 chr6 48423893 48424082 + 1.33333 NA Intergenic Intergenic -355298 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 290.499 chr4 61058853 61059108 + 1.33333 NA Intergenic Intergenic -84676 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 316.666-3 chr8 129608422 129608691 + 1.33333 NA intron (NR_130917, intron 1 of 3) L1PA4|LINE|L1 -33538 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 311.334-2 chr14 56880644 56881053 + 1.33333 NA intron (NR_146411, intron 2 of 2) UCON2|DNA?|DNA? 67690 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 220.833-17 chr5 16611187 16611685 + 1.33333 NA intron (NM_001034850, intron 1 of 8) intron (NM_001034850, intron 1 of 8) -4490 NR_109946 101929524 Hs.734029 NR_109946 ENSG00000246214 LOC101929524 - uncharacterized LOC101929524 ncRNA 358 chr10 74256952 74257461 + 1.33333 NA intron (NM_001369124, intron 3 of 9) MER8|DNA|TcMar-Tigger 80443 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 162-11 chr10 98200417 98200748 + 1.33333 NA intron (NM_001256620, intron 3 of 8) intron (NM_001256620, intron 3 of 8) 65925 NM_001256619 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 297-4 chr2 74586455 74586715 + 1.33333 NA intron (NM_001321739, intron 4 of 10) intron (NM_001321739, intron 4 of 10) 32425 NM_001318867 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 130-68 chr3 61230302 61230571 + 1.33333 NA intron (NM_001320900, intron 1 of 9) MSTA|LTR|ERVL-MaLR 21016 NM_001320900 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 321.667-10 chr8 129309720 129310383 + 1.33333 NA Intergenic L1MEc|LINE|L1 -68811 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 174.333-45 chr5 39298235 39298406 + 1.33333 NA intron (NM_001737, intron 9 of 10) L1MEc|LINE|L1 -27671 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 560.666 chr13 66631186 66631874 + 1.33333 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -193639 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 299.667-15 chr8 104764266 104764636 + 1.33333 NA Intergenic LTR81A|LTR|Gypsy -175427 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 340-4 chr4 81901647 81902105 + 1.33333 NA Intergenic LTR85c|LTR|Gypsy? -429969 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 391.667 chr10 33831839 33832475 + 1.33333 NA Intergenic Intergenic -59477 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 267.5-9 chr22 47526199 47526508 + 1.33333 NA Intergenic L1ME3F|LINE|L1 -39242 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 352.666-4 chr8 113591815 113592117 + 1.33333 NA Intergenic Intergenic -155027 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 212.667-23 chr2 64668182 64668512 + 1.33333 NA Intergenic L2|LINE|L2 -14434 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 171.333-52 chr4 99301550 99301772 + 1.33333 NA TTS (NR_037884) TTS (NR_037884) -10676 NM_000667 124 Hs.654433 NM_000667 ENSG00000187758 ADH1A ADH1 alcohol dehydrogenase 1A (class I), alpha polypeptide protein-coding 122.666-4 chr4 56708340 56708516 + 1.33333 NA Intergenic Intergenic -26722 NM_001145460 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 179.333-57 chr9 31735056 31735381 + 1.33333 NA Intergenic L2c|LINE|L2 -353728 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 258.167-2 chr12 10455268 10455604 + 1.33333 NA promoter-TSS (NM_001304448) promoter-TSS (NM_001304448) -751 NM_001304448 3821 Hs.512576 NM_002259 ENSG00000134545 KLRC1 CD159A|NKG2|NKG2A killer cell lectin like receptor C1 protein-coding 376.666-3 chr3 118453230 118453711 + 1.33333 NA Intergenic L1PA11|LINE|L1 -188298 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 219-25 chr6 161344066 161344309 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -70126 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 172.667-24 chr14 71580721 71580961 + 1.33333 NA intron (NM_001354289, intron 5 of 23) L1ME4a|LINE|L1 -5457 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 241.166 chr11 91069531 91069726 + 1.33333 NA Intergenic L2a|LINE|L2 -200426 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 270.999 chr2 78065459 78065683 + 1.33333 NA intron (NR_110288, intron 1 of 3) MER31A|LTR|ERV1 -23159 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 200.833-14 chr2 34182635 34182806 + 1.33333 NA intron (NR_126403, intron 4 of 5) Tigger1|DNA|TcMar-Tigger 115494 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 165.333-73 chr9 36033484 36033705 + 1.33333 NA Intergenic L2a|LINE|L2 -3319 NM_001316347 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 305.333-9 chr4 87926341 87926663 + 1.33333 NA Intergenic ERVL-E-int|LTR|ERVL -49148 NM_001251829 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 119.666-3 chr7 12087854 12087982 + 1.33333 NA Intergenic Intergenic -123376 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 282-20 chr5 26115523 26115851 + 1.33333 NA Intergenic L1ME1|LINE|L1 922899 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 303-10 chr8 88604848 88605343 + 1.33333 NA Intergenic Intergenic -277612 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 278.833 chr12 81777780 81778255 + 1.33333 NA Intergenic Intergenic -18667 NM_003625 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 261.333-13 chr3 183541455 183541909 + 1.33333 NA intron (NM_130446, intron 1 of 6) FLAM_A|SINE|Alu -7053 NR_046687 100874019 NR_046687 ENSG00000242522 KLHL6-AS1 - KLHL6 antisense RNA 1 ncRNA 177.333-21 chr14 88082721 88083014 + 1.33333 NA intron (NR_046094, intron 2 of 3) L1PA3|LINE|L1 -56555 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 225-33 chr7 1731228 1731513 + 1.33333 NA intron (NM_001128636, intron 2 of 2) L1MC|LINE|L1 10940 NR_120508 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 285.333-11 chr4 126176825 126177168 + 1.33333 NA Intergenic L2a|LINE|L2 669737 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 325.833 chr11 16206930 16207273 + 1.33333 NA intron (NM_033326, intron 4 of 15) intron (NM_033326, intron 4 of 15) 149445 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 250.333-9 chr12 46673719 46673912 + 1.33333 NA Intergenic Intergenic 152182 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 186.166-2 chr7 127789985 127790208 + 1.33333 NA intron (NM_014390, intron 10 of 23) intron (NM_014390, intron 10 of 23) 137902 NM_014390 27044 Hs.122523 NM_014390 ENSG00000197157 SND1 TDRD11|Tudor-SN|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 116.833-15 chr12 65952722 65952988 + 1.33333 NA TTS (NM_001300918) TTS (NM_001300918) -70530 NR_158985 100129940 Hs.685856 NR_120478 ENSG00000197301 HMGA2-AS1 - HMGA2 antisense RNA 1 ncRNA 169.5-7 chr10 126165952 126166145 + 1.33333 NA intron (NM_001288974, intron 3 of 18) intron (NM_001288974, intron 3 of 18) -192775 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 159.667-18 chr10 56871940 56872162 + 1.33333 NA Intergenic L1PA7|LINE|L1 432508 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 207.333-12 chr11 83953840 83954032 + 1.33333 NA intron (NM_001142699, intron 14 of 27) intron (NM_001142699, intron 14 of 27) -271511 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 301.999 chr15 95732874 95733178 + 1.33333 NA Intergenic Intergenic 299933 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 218-23 chr2 10076924 10077099 + 1.33333 NA intron (NM_001037160, intron 1 of 2) L2|LINE|L2 3400 NM_001037160 192668 Hs.27092 NM_001037160 ENSG00000205795 CYS1 - cystin 1 protein-coding 261.333-33 chrX 76101698 76102074 + 1.33333 NA Intergenic L1MA3|LINE|L1 -71043 NM_001300888 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 147.333-31 chr15 82841263 82841444 + 1.33333 NA Intergenic L1ME4a|LINE|L1 31725 NM_001080435 123720 Hs.377360 NM_001080435 ENSG00000156232 WHAMM WHAMM1|WHDC1 WASP homolog associated with actin, golgi membranes and microtubules protein-coding 295.999-2 chr21 27454959 27455408 + 1.33333 NA Intergenic Intergenic -267196 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 269.833-16 chr5 71661956 71662353 + 1.33333 NA Intergenic Intergenic -57121 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 129.333-44 chr2 31853695 31853806 + 1.33333 NA Intergenic Intergenic -49770 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 161.5-24 chr2 135140598 135140911 + 1.33333 NA intron (NM_001172435, intron 17 of 24) MER68|LTR|ERVL 4126 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 308-2 chr11 37173719 37173966 + 1.33333 NA Intergenic Intergenic -575563 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 254.834 chr12 47702889 47703237 + 1.33333 NA intron (NM_024604, intron 1 of 16) intron (NM_024604, intron 1 of 16) 2967 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 142-36 chr17 61540906 61541095 + 1.33333 NA Intergenic L1PA16|LINE|L1 50219 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 176.666-3 chr7 91927148 91927345 + 1.33333 NA Intergenic L2a|LINE|L2 -13616 NM_147185 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 367.666 chr6 79609790 79610240 + 1.33333 NA Intergenic Intergenic -21314 NM_031469 83699 Hs.302772 NM_031469 ENSG00000198478 SH3BGRL2 - SH3 domain binding glutamate rich protein like 2 protein-coding 381-2 chr5 123588869 123589375 + 1.33333 NA intron (NM_001044723, intron 7 of 12) intron (NM_001044723, intron 7 of 12) 43705 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 182-57 chr9 105082432 105082709 + 1.33333 NA Intergenic MER4D1|LTR|ERV1 -154415 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 169-41 chr4 61319482 61319724 + 1.33333 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 117431 NM_001371342 146-30 chr18 54720672 54720791 + 1.33333 NA Intergenic Intergenic -107746 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 178.167-23 chr2 16961786 16962041 + 1.33333 NA Intergenic Intergenic -296079 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 201.167-15 chr20 42061148 42061481 + 1.33333 NA Intergenic MLT1I|LTR|ERVL-MaLR -442937 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 132.333-44 chr17 62866880 62866989 + 1.33333 NA Intergenic Intergenic 58432 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 240.667-5 chr1 239993061 239993366 + 1.33333 NA Intergenic AluSq|SINE|Alu -14311 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 170.5-31 chr2 127613370 127613695 + 1.33333 NA intron (NM_001080527, intron 25 of 46) L1MEb|LINE|L1 -32332 NM_001161415 2840 Hs.46453 NM_005291 ENSG00000144230 GPR17 - G protein-coupled receptor 17 protein-coding 216.667-45 chr7 39256985 39257281 + 1.33333 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 72001 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 409.999 chr2 238603850 238604406 + 1.33333 NA Intergenic L1MEd|LINE|L1 -48629 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 159.333-46 chr22 34565568 34565860 + 1.33333 NA Intergenic Intergenic 432202 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 472 chr4 77053935 77054605 + 1.33333 NA intron (NM_006835, intron 6 of 6) intron (NM_006835, intron 6 of 6) 20640 NM_001348133 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 184.833-22 chr4 31474681 31474915 + 1.33333 NA Intergenic Intergenic -31746 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 295.5-5 chr21 23357443 23357916 + 1.33333 NA Intergenic MLT1E|LTR|ERVL-MaLR 27156 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 291.5-15 chr4 88534110 88534648 + 1.33333 NA Intergenic MER20|DNA|hAT-Charlie 10569 NR_134663 101929134 Hs.734064 NR_134662 ENSG00000285122 PIGY-DT - PIGY divergent transcript ncRNA 246.333-5 chr11 109837217 109837628 + 1.33333 NA Intergenic L2a|LINE|L2 -255970 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 279.5-10 chr5 23821534 23821797 + 1.33333 NA Intergenic Intergenic -129683 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 202.166-3 chr8 80133552 80133889 + 1.33333 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 37401 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 334.999-2 chr14 65774145 65774398 + 1.33333 NA Intergenic Intergenic 303169 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 234.833-18 chr5 38010679 38010887 + 1.33333 NA Intergenic Intergenic -14914 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 201.666-2 chr21 18592989 18593233 + 1.33333 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 93053 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 145-77 chr7 15409591 15409722 + 1.33333 NA intron (NM_001004320, intron 5 of 12) intron (NM_001004320, intron 5 of 12) 152359 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 183.333-21 chr15 56167662 56167839 + 1.33333 NA intron (NM_001368073, intron 2 of 8) intron (NM_001368073, intron 2 of 8) 22182 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 124-34 chr14 57387131 57387242 + 1.33333 NA Intergenic Intergenic -3400 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 186.333-2 chr1 22915577 22915752 + 1.33333 NA 3' UTR (NM_001309193, exon 17 of 17) 3' UTR (NM_001309193, exon 17 of 17) -52438 NR_036214 100422914 NR_036214 ENSG00000264014 MIR4253 - microRNA 4253 ncRNA 333.333 chr11 72937249 72937870 + 1.33333 NA intron (NM_014824, intron 8 of 19) intron (NM_014824, intron 8 of 19) 123148 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 196.666-4 chr8 87142447 87142736 + 1.33333 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 276176 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 314.167-3 chr14 55000456 55000813 + 1.33333 NA exon (NM_001008396, exon 9 of 25) exon (NM_001008396, exon 9 of 25) 26465 NM_007086 11169 Hs.385998 NM_007086 ENSG00000198554 WDHD1 AND-1|AND1|CHTF4|CTF4 WD repeat and HMG-box DNA binding protein 1 protein-coding 275.666 chr12 24932231 24932510 + 1.33333 NA intron (NM_001178091, intron 1 of 9) L2a|LINE|L2 16731 NM_001178091 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 197.667-62 chr9 74446973 74447339 + 1.33333 NA Intergenic Intergenic -50179 NM_006914 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 214.5-33 chr6 46245648 46245931 + 1.33333 NA intron (NM_001251973, intron 4 of 4) MER5B|DNA|hAT-Charlie -30535 NR_125838 101926915 Hs.575377 NR_125838 LOC101926915 - uncharacterized LOC101926915 ncRNA 126.333-75 chr3 167809892 167810000 + 1.33333 NA intron (NM_001122752, intron 6 of 8) intron (NM_001122752, intron 6 of 8) 74223 NM_005025 5274 Hs.478153 NM_005025 ENSG00000163536 SERPINI1 PI12|neuroserpin serpin family I member 1 protein-coding 428.833 chr15 67678992 67679515 + 1.33333 NA intron (NM_001206804, intron 13 of 21) intron (NM_001206804, intron 13 of 21) 130159 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 352.334-3 chr5 42007405 42007745 + 1.33333 NA Intergenic Intergenic 82294 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 184-19 chr15 38281947 38282131 + 1.33333 NA intron (NM_152594, intron 1 of 6) intron (NM_152594, intron 1 of 6) 29203 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 354.667-4 chr8 137460349 137460817 + 1.33333 NA Intergenic Intergenic -46995 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 298-12 chr8 113583650 113583944 + 1.33333 NA Intergenic Intergenic -146858 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 154.166 chr12 125432210 125432352 + 1.33333 NA intron (NM_052907, intron 3 of 8) intron (NM_052907, intron 3 of 8) 105665 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 299.999 chr17 63709309 63709579 + 1.33333 NA intron (NM_001003787, intron 8 of 12) L1ME5|LINE|L1 9106 NR_046273 729683 Hs.534931 NR_046273 LOC729683 - uncharacterized LOC729683 ncRNA 370-4 chr7 49532331 49532754 + 1.33333 NA Intergenic L1PA10|LINE|L1 -241096 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 243.999-2 chr4 143633464 143633651 + 1.33333 NA intron (NM_001168235, intron 2 of 7) intron (NM_001168235, intron 2 of 7) 67118 NM_001168235 166752 Hs.252714 NM_001168235 ENSG00000183090 FREM3 - FRAS1 related extracellular matrix 3 protein-coding 198.333-44 chr8 100258391 100258619 + 1.33333 NA 3' UTR (NM_001353838, exon 10 of 10) 3' UTR (NM_001353838, exon 10 of 10) 43688 NM_001353837 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 343.666-4 chr8 77932082 77932487 + 1.33333 NA Intergenic Intergenic 481587 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 181.333-17 chr14 87670697 87671008 + 1.33333 NA Intergenic L1PA15|LINE|L1 -15558 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 355.999-2 chr6 138173458 138173736 + 1.33333 NA intron (NM_020340, intron 2 of 33) L1M2|LINE|L1 11658 NM_020340 57221 Hs.194408 NM_020340 ENSG00000112379 ARFGEF3 A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1 ARFGEF family member 3 protein-coding 515 chr10 92765336 92766077 + 1.33333 NA Intergenic Intergenic -61125 NM_001013848 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 238.5-35 chr9 84312894 84313231 + 1.33333 NA intron (NR_037638, intron 2 of 18) intron (NR_037638, intron 2 of 18) 27696 NR_037638 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 236.667-9 chr14 49465433 49465758 + 1.33333 NA Intergenic Intergenic 120785 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 144.833-62 chr5 121228300 121228499 + 1.33333 NA Intergenic L1PA16|LINE|L1 -94151 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 180.666-2 chr18 50032187 50032500 + 1.33333 NA intron (NM_001080467, intron 4 of 39) L1MB8|LINE|L1 94220 NR_036204 100422865 NR_036204 ENSG00000283343 MIR4320 - microRNA 4320 ncRNA 231.666-2 chr19 44974441 44974873 + 1.33333 NA intron (NM_001282175, intron 4 of 13) intron (NM_001282175, intron 4 of 13) 19277 NM_001294 1209 Hs.444441 NM_001294 ENSG00000104853 CLPTM1 - CLPTM1 regulator of GABA type A receptor forward trafficking protein-coding 178.833-6 chr10 81185453 81185624 + 1.33333 NA Intergenic Intergenic 535741 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 136-57 chr4 55986069 55986221 + 1.33333 NA intron (NM_025009, intron 14 of 25) MIR|SINE|MIR 37200 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 387.333-2 chr2 36184673 36185082 + 1.33333 NA Intergenic Intergenic 170693 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 500.999 chr5 80935355 80935809 + 1.33333 NA Intergenic L1ME3A|LINE|L1 -24781 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 121.333-17 chr11 45986408 45986557 + 1.33333 NA intron (NR_147890, intron 5 of 18) intron (NR_147890, intron 5 of 18) 63826 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 282.167-8 chr18 70679175 70679596 + 1.33333 NA Intergenic Intergenic -28431 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 290.666-3 chr6 66995482 66995848 + 1.33333 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -1059686 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 178-17 chr13 108267133 108267359 + 1.33333 NA Intergenic Intergenic -2383 NM_006573 10673 Hs.525157 NM_006573 ENSG00000102524 TNFSF13B BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 TNF superfamily member 13b protein-coding 189-29 chr3 89322677 89322960 + 1.33333 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 215197 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 257.833-4 chr17 63160344 63160720 + 1.33333 NA intron (NM_025185, intron 4 of 25) L1ME4a|LINE|L1 194297 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 239.833-11 chr17 62142619 62142907 + 1.33333 NA Intergenic L1MB3|LINE|L1 -77485 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 356.5-2 chr12 14968517 14968983 + 1.33333 NA Intergenic Intergenic -4292 NM_006205 5149 Hs.54471 NM_006205 ENSG00000139053 PDE6H ACHM6|RCD3 phosphodiesterase 6H protein-coding 278.333-9 chr2 100839509 100839806 + 1.33333 NA intron (NM_002518, intron 1 of 20) Tigger2|DNA|TcMar-Tigger 19518 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 159-11 chr10 63823836 63824063 + 1.33333 NA Intergenic L1MA9|LINE|L1 -302059 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 177.5-63 chr5 68827551 68827745 + 1.33333 NA Intergenic Intergenic 202279 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 244.667-17 chr3 44848039 44848471 + 1.33333 NA intron (NM_020242, intron 31 of 34).2 intron (NM_020242, intron 31 of 34).2 -13633 NR_030290 693149 NR_030290 ENSG00000284498 MIR564 MIRN564|hsa-mir-564 microRNA 564 ncRNA 275.333-20 chr6 19743008 19743299 + 1.33333 NA intron (NR_134651, intron 3 of 3) MER45B|DNA|hAT-Tip100 61606 NR_134651 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 474.666 chr1 106764625 106765303 + 1.33333 NA Intergenic L1M5|LINE|L1 -53275 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 132.833-25 chr17 53056098 53056292 + 1.33333 NA Intergenic THE1B|LTR|ERVL-MaLR 70690 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 283.333-9 chr6 40496699 40497013 + 1.33333 NA intron (NM_020737, intron 1 of 2) L2a|LINE|L2 90508 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 220.5-31 chr6 137540605 137541122 + 1.33333 NA Intergenic Intergenic -46469 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 250.167-7 chr16 71243146 71243391 + 1.33333 NA Intergenic Intergenic -12546 NM_001198543 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 121.167-60 chr4 45537566 45537696 + 1.33333 NA Intergenic L1MC3|LINE|L1 586423 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 196-47 chr4 27830630 27830856 + 1.33333 NA Intergenic Intergenic 613264 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 182.833-36 chr4 82743733 82743990 + 1.33333 NA intron (NM_001037582, intron 1 of 4) AluJb|SINE|Alu 9569 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 245.5-32 chr9 32190998 32191331 + 1.33333 NA Intergenic MER92-int|LTR|ERV1 -193439 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 254-7 chr15 94254538 94254845 + 1.33333 NA Intergenic Intergenic -43510 NM_001159643 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 181.333-41 chr4 101979029 101979214 + 1.33333 NA intron (NM_017935, intron 7 of 16) intron (NM_017935, intron 7 of 16) 165279 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 211.666 chr11 39886722 39887155 + 1.33333 NA Intergenic L1PA3|LINE|L1 406192 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 278.833-3 chr18 6028645 6028955 + 1.33333 NA TTS (NM_001365767) TTS (NM_001365767) -132846 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 258.333-9 chr11 23699629 23699990 + 1.33333 NA Intergenic AluSz|SINE|Alu -280619 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 246.333-17 chr4 31979913 31980139 + 1.33333 NA Intergenic L2|LINE|L2 -17353 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 195.667-38 chr6 65470470 65470725 + 1.33333 NA intron (NM_198283, intron 4 of 9) intron (NM_198283, intron 4 of 9) 109207 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 152-47 chr8 67779846 67779971 + 1.33333 NA Intergenic Intergenic -33548 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 298.833-4 chr2 51784573 51784979 + 1.33333 NA intron (NR_135237, intron 6 of 10) MIRb|SINE|MIR -585872 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 119-97 chr8 63649505 63649659 + 1.33333 NA Intergenic Intergenic -119848 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 252.833-10 chrX 133150980 133151261 + 1.33333 NA Intergenic Intergenic 67234 NM_016521 51270 NM_016521 ENSG00000183434 TFDP3 CT30|DP4|HCA661 transcription factor Dp family member 3 protein-coding 200.333-7 chr11 76030875 76031083 + 1.33333 NA intron (NM_003369, intron 12 of 14) intron (NM_003369, intron 12 of 14) 175523 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 515.833 chr2 15298556 15299718 + 1.33333 NA intron (NR_052013, intron 40 of 50) intron (NR_052013, intron 40 of 50) 262197 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 252-13 chr6 78202883 78203397 + 1.33333 NA Intergenic Intergenic 336169 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 146-69 chr8 50053094 50053276 + 1.33333 NA intron (NR_135798, intron 1 of 15) L1MB7|LINE|L1 -110946 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 313.834-3 chr20 41303162 41303535 + 1.33333 NA Intergenic Intergenic -3228 NM_015035 23051 Hs.380133 NM_015035 ENSG00000174306 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 303.166 chr11 106627644 106627923 + 1.33333 NA Intergenic L1ME2z|LINE|L1 376376 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 171.666 chr11 25518576 25518780 + 1.33333 NA Intergenic Intergenic -670445 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 371.666 chr3 87513643 87514121 + 1.33333 NA Intergenic Intergenic -237298 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 210-13 chr18 10119542 10119777 + 1.33333 NA Intergenic L1MA7|LINE|L1 205643 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 185.667-40 chr5 74027674 74027883 + 1.33333 NA Intergenic L1ME4b|LINE|L1 214232 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 267.333-20 chr3 112894031 112894437 + 1.33333 NA Intergenic L1ME1|LINE|L1 -48284 NM_001370552 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 162.667-73 chr6 141810514 141810716 + 1.33333 NA Intergenic Intergenic 278184 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 236.166 chr1 29540898 29541091 + 1.33333 NA Intergenic Intergenic -190880 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 227.167-11 chr17 71467338 71467957 + 1.33333 NA Intergenic MIRc|SINE|MIR -265468 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 157.333-45 chr22 28459666 28459813 + 1.33333 NA promoter-TSS (NR_106713) promoter-TSS (NR_106713) -130 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 177.834-5 chr5 38975290 38975601 + 1.33333 NA intron (NM_001285439, intron 10 of 38) intron (NM_001285439, intron 10 of 38) 98954 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 379.999 chr5 99747196 99747600 + 1.33333 NA Intergenic L1MA4|LINE|L1 213408 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 222.333-12 chr15 60301330 60301573 + 1.33333 NA Intergenic Intergenic 96535 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 298.667-11 chr6 51591434 51591866 + 1.33333 NA Intergenic L1MA9|LINE|L1 -30220 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 174.5-3 chr1 181550783 181550935 + 1.33333 NA intron (NM_001205293, intron 3 of 47) intron (NM_001205293, intron 3 of 47) 67342 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 259.833-15 chr8 11499346 11499800 + 1.33333 NA intron (NM_001330465, intron 1 of 11).2 L4_A_Mam|LINE|RTE-X 5186 NM_001715 640 Hs.146591 NM_001715 ENSG00000136573 BLK MODY11 BLK proto-oncogene, Src family tyrosine kinase protein-coding 199.833-10 chr14 63017538 63017715 + 1.33333 NA intron (NM_139318, intron 1 of 10) intron (NM_139318, intron 1 of 10) 27832 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 188.833-43 chr9 83321010 83321428 + 1.33333 NA intron (NM_001244960, intron 6 of 13) L1M2a1|LINE|L1 10742 NM_001244961 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 238.333-26 chr5 106559471 106559771 + 1.33333 NA Intergenic L1MC5a|LINE|L1 451393 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 212.666-2 chr18 13793095 13793337 + 1.33333 NA Intergenic MER4B|LTR|ERV1 -30933 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 323.667-5 chr2 165424609 165425017 + 1.33333 NA Intergenic Intergenic -44885 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 161.333-62 chr5 85598934 85599157 + 1.33333 NA Intergenic Intergenic -683399 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 439.834 chr3 47691879 47692476 + 1.33333 NA intron (NM_003074, intron 12 of 27) intron (NM_003074, intron 12 of 27) -30483 NR_145791 109623484 NR_145791 SNORD146 - small nucleolar RNA, C/D box 146 snoRNA 168.333-59 chr8 127910702 127910855 + 1.33333 NA intron (NR_003367, intron 2 of 8) MIR|SINE|MIR 37945 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 499.667 chr8 110025190 110025869 + 1.33333 NA Intergenic Intergenic -49758 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 251.333-18 chr4 65368098 65368805 + 1.33333 NA intron (NM_182472, intron 8 of 16) intron (NM_182472, intron 8 of 16) 301037 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 216.833-14 chr2 104487999 104488186 + 1.33333 NA TTS (NR_110113) TTS (NR_110113) 22417 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 178.666-2 chr4 55516546 55516720 + 1.33333 NA intron (NM_004898, intron 1 of 22) L1MC1|LINE|L1 29299 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 427.333 chr2 50931607 50932072 + 1.33333 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 100293 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 279.333-17 chr7 112605395 112605738 + 1.33333 NA Intergenic Intergenic -12499 NR_110160 100996249 Hs.561749 NR_110159 LOC100996249 - uncharacterized LOC100996249 ncRNA 286.166 chr11 13502787 13503150 + 1.33333 NA Intergenic Intergenic -6793 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 247.333-29 chr8 128400162 128400574 + 1.33333 NA Intergenic Intergenic 164311 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 162.667-86 chr8 130129910 130130085 + 1.33333 NA intron (NM_001362925, intron 16 of 29) intron (NM_001362925, intron 16 of 29) -45229 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 422.168 chr1 69250080 69250436 + 1.33333 NA Intergenic Intergenic -182997 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 184-23 chr19 46157306 46157617 + 1.33333 NA intron (NM_001002915, intron 2 of 4) L1MD|LINE|L1 9223 NM_001135113 147920 Hs.99376 NM_001002915 ENSG00000204866 IGFL2 UNQ645|VPRI645 IGF like family member 2 protein-coding 181.666-4 chr2 223152832 223152996 + 1.33333 NA Intergenic Intergenic 100984 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 253.666 chr1 186926411 186926643 + 1.33333 NA intron (NM_024420, intron 7 of 17) intron (NM_024420, intron 7 of 17) 97578 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 131.666 chr20 52562476 52562583 + 1.33333 NA Intergenic L1MB7|LINE|L1 -58309 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 265.333-6 chr11 74585127 74585478 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -7280 NR_046409 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 179.333 chr1 40302511 40302823 + 1.33333 NA exon (NM_001852, exon 30 of 32) exon (NM_001852, exon 30 of 32) 14619 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 384-3 chr5 36941142 36941674 + 1.33333 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 64639 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 250.833-4 chr12 94620939 94621237 + 1.33333 NA intron (NM_020698, intron 1 of 3) intron (NM_020698, intron 1 of 3) -5087 NM_001301036 57458 Hs.370410 NM_020698 ENSG00000057704 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 219.167-23 chr6 142384316 142384590 + 1.33333 NA intron (NM_198569, intron 6 of 24) intron (NM_198569, intron 6 of 24) 82446 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 193.333-10 chr11 20319933 20320108 + 1.33333 NA Intergenic MIRb|SINE|MIR -43665 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 294.666-3 chr4 47803568 47804062 + 1.33333 NA intron (NM_006587, intron 2 of 21) L1MA2|LINE|L1 -27530 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 287.499-2 chr7 82086016 82086326 + 1.33333 NA intron (NM_000722, intron 6 of 38) intron (NM_000722, intron 6 of 38) 76994 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 252.333-3 chr1 77048280 77048532 + 1.33333 NA intron (NM_030965, intron 3 of 4) intron (NM_030965, intron 3 of 4) -11737 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 230.167-21 chr7 24472230 24472518 + 1.33333 NA Intergenic L2a|LINE|L2 -101078 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 363.666-3 chr8 83096650 83097096 + 1.33333 NA Intergenic Intergenic 184769 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 232 chr1 2261029 2261328 + 1.33333 NA intron (NM_003036, intron 1 of 6) L1MC4|LINE|L1 32859 NM_003036 6497 Hs.656507 NM_003036 ENSG00000157933 SKI SGS|SKV SKI proto-oncogene protein-coding 254 chr1 106560865 106561160 + 1.33333 NA Intergenic L1MA3|LINE|L1 -257227 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 173.166-2 chr15 96572770 96572921 + 1.33333 NA Intergenic MLT1G1|LTR|ERVL-MaLR 208809 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 293.167-4 chr18 1934566 1935125 + 1.33333 NA Intergenic ERVL-E-int|LTR|ERVL -575216 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 178-36 chr3 163650424 163650683 + 1.33333 NA Intergenic Intergenic -347252 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 155.333-57 chr20 52680579 52680780 + 1.33333 NA Intergenic MER113|DNA|hAT-Charlie 59841 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 191.333-20 chr2 186728082 186728310 + 1.33333 NA intron (NM_177454, intron 1 of 7) intron (NM_177454, intron 1 of 7) 34136 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 393.5-4 chr8 123316936 123317887 + 1.33333 NA Intergenic Intergenic -30623 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 190-3 chr1 94592795 94593058 + 1.33333 NA Intergenic Intergenic 49224 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 241-15 chr3 41821850 41822137 + 1.33333 NA intron (NR_136342, intron 17 of 34) L2|LINE|L2 140110 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 291.333-11 chr7 13938908 13939295 + 1.33333 NA intron (NM_001370555, intron 6 of 12) intron (NM_001370555, intron 6 of 12) 47413 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 366.001 chr10 23840249 23840736 + 1.33333 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 145765 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 142.666-2 chr15 92984861 92984984 + 1.33333 NA intron (NM_001271, intron 25 of 38) MIRc|SINE|MIR 80523 NR_036136 100422995 NR_036136 ENSG00000284324 MIR3175 mir-3175 microRNA 3175 ncRNA 176.667-27 chr17 64502977 64503170 + 1.33333 NA exon (NM_001320595, exon 9 of 14) exon (NM_001320595, exon 9 of 14) -1760 NR_039969 100616408 NR_039969 ENSG00000284368 MIR5047 - microRNA 5047 ncRNA 200.833-13 chr18 66620570 66620823 + 1.33333 NA Intergenic L1M4b|LINE|L1 -16606 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 296.166 chr6 53786718 53787067 + 1.33333 NA Intergenic Intergenic -8113 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 205.833-20 chr22 27351865 27352134 + 1.33333 NA Intergenic Intergenic 41348 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 238-18 chr3 44837195 44837455 + 1.33333 NA intron (NM_020242, intron 26 of 34).2 L1M5|LINE|L1 -24563 NR_030290 693149 NR_030290 ENSG00000284498 MIR564 MIRN564|hsa-mir-564 microRNA 564 ncRNA 267.833-2 chr10 96163983 96164295 + 1.33333 NA TTS (NM_001330737) TTS (NM_001330737) 33517 NM_001330734 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 167.833-10 chr12 116991679 116991901 + 1.33333 NA intron (NM_153348, intron 7 of 10) intron (NM_153348, intron 7 of 10) -4453 NR_103809 100506551 Hs.657861 NR_103809 ENSG00000257279 LOC100506551 - uncharacterized LOC100506551 ncRNA 225.666-3 chr7 38819051 38819348 + 1.33333 NA intron (NM_014396, intron 6 of 28) L2c|LINE|L2 89992 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 300.666-2 chr10 106041191 106041433 + 1.33333 NA Intergenic L1M3|LINE|L1 -98853 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 268.666 chr1 176734160 176734442 + 1.33333 NA intron (NM_020318, intron 12 of 22) intron (NM_020318, intron 12 of 22) 271126 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 283.5-2 chr10 110132967 110133374 + 1.33333 NA intron (NM_001320591, intron 15 of 15) intron (NM_001320591, intron 15 of 15) -74435 NM_130439 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 117.667-17 chr10 56621897 56622040 + 1.33333 NA Intergenic Intergenic -260695 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 308-3 chr14 46248590 46248960 + 1.33333 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 184616 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 228-18 chr2 39738668 39738891 + 1.33333 NA intron (NR_135664, intron 11 of 11) intron (NR_135664, intron 11 of 11) 40479 NM_025264 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 320.666-3 chr20 47636553 47636943 + 1.33333 NA exon (NM_006534, exon 12 of 23) exon (NM_006534, exon 12 of 23) 134861 NM_181659 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 339.999 chr13 89785601 89785915 + 1.33333 NA Intergenic Intergenic -221345 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 232.333-6 chr12 25192186 25192466 + 1.33333 NA intron (NM_001352063, intron 1 of 13) intron (NM_001352063, intron 1 of 13) 2834 NM_001352067 55259 Hs.407771 NM_018272 ENSG00000118307 CASC1 LAS1|PPP1R54 cancer susceptibility 1 protein-coding 327.5-4 chr2 162745988 162746279 + 1.33333 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -22803 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 291.166 chr2 143773523 143773854 + 1.33333 NA Intergenic Intergenic -163379 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 265.666 chr1 111489260 111489527 + 1.33333 NA intron (NM_001081976, intron 2 of 5) MLT1B|LTR|ERVL-MaLR 14240 NM_020683 57413 Hs.281342 NM_020683 ENSG00000121933 TMIGD3 AD026 transmembrane and immunoglobulin domain containing 3 protein-coding 180.5-36 chr3 139750308 139750499 + 1.33333 NA Intergenic L1M4c|LINE|L1 -72353 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 253-21 chr6 50509763 50510207 + 1.33333 NA Intergenic Intergenic -203559 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 335 chr1 155153624 155153942 + 1.33333 NA Intergenic L1MA2|LINE|L1 -13252 NM_153741 54344 Hs.110477 NM_018973 ENSG00000179085 DPM3 CDG1O dolichyl-phosphate mannosyltransferase subunit 3, regulatory protein-coding 313.167-3 chr2 13157472 13157749 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -150597 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 161.333-32 chr17 61251904 61252071 + 1.33333 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 115717 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 226.666-4 chr5 96464706 96465037 + 1.33333 NA intron (NR_130776, intron 4 of 4) L1M5|LINE|L1 -31623 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 216.333-33 chr5 5578396 5578707 + 1.33333 NA Intergenic Intergenic 155874 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 261.333-18 chr5 173389404 173389754 + 1.33333 NA Intergenic L1MC4|LINE|L1 42124 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 221.666-2 chr16 22983882 22984084 + 1.33333 NA Intergenic Intergenic 165287 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 214-16 chr18 4747765 4748071 + 1.33333 NA Intergenic Intergenic -292611 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 250-20 chr5 102173883 102174191 + 1.33333 NA Intergenic L1ME3A|LINE|L1 122247 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 367.334-2 chr14 83861642 83862081 + 1.33333 NA Intergenic LTR33A_|LTR|ERVL 1219229 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 252.999 chr10 17752187 17752499 + 1.33333 NA exon (NM_001098844, exon 1 of 4) exon (NM_001098844, exon 1 of 4) 142 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 317.333-9 chr6 138207986 138208332 + 1.33333 NA intron (NM_020340, intron 3 of 33) intron (NM_020340, intron 3 of 33) 10331 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 473.999 chr5 73107990 73108412 + 1.33333 NA Intergenic L1MB3|LINE|L1 -12374 NM_173490 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 406.667-2 chr5 124340127 124340730 + 1.33333 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 98092 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 396-6 chr5 96962967 96963540 + 1.33333 NA intron (NM_175920, intron 1 of 17) intron (NM_175920, intron 1 of 17) 4820 NM_175920 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 339.333-2 chr4 86160319 86160697 + 1.33333 NA intron (NM_001318069, intron 3 of 13) MER20B|DNA|hAT-Charlie 40702 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 117.5-74 chr8 129457609 129457765 + 1.33333 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 26455 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 290.167-8 chr4 169149193 169149428 + 1.33333 NA intron (NM_020870, intron 4 of 11) intron (NM_020870, intron 4 of 11) 121646 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 317.333-8 chr6 121581385 121581775 + 1.33333 NA Intergenic Intergenic 145934 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 277.999-2 chr2 113788322 113788636 + 1.33333 NA Intergenic MER76|LTR|ERVL -31837 NM_001330314 80255 Hs.355655 NM_025181 ENSG00000115084 SLC35F5 - solute carrier family 35 member F5 protein-coding 190-35 chr20 15339068 15339237 + 1.33333 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 142312 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 198.333-38 chr6 135899128 135899532 + 1.33333 NA intron (NM_018945, intron 1 of 12) intron (NM_018945, intron 1 of 12) 47629 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 229.333-19 chr2 212737827 212738045 + 1.33333 NA Intergenic Intergenic -57395 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 122.833-56 chr3 19514239 19514375 + 1.33333 NA intron (NM_144633, intron 13 of 15) intron (NM_144633, intron 13 of 15) -199376 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 206.833-31 chr9 28118364 28118541 + 1.33333 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -544586 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 328.833-4 chr5 56843711 56844065 + 1.33333 NA intron (NM_005921, intron 1 of 19) intron (NM_005921, intron 1 of 19) 28339 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 188.833-35 chr6 137276939 137277099 + 1.33333 NA Intergenic Intergenic -57589 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 290.666-2 chr3 137745700 137745998 + 1.33333 NA Intergenic Intergenic -18466 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 282-19 chr4 74322978 74323267 + 1.33333 NA Intergenic Intergenic 14652 NM_001270993 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 249 chr10 26270577 26271014 + 1.33333 NA intron (NM_000818, intron 10 of 16) intron (NM_000818, intron 10 of 16) 54021 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 320-6 chr5 112109728 112110171 + 1.33333 NA Intergenic Intergenic -50577 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 160.166-3 chr6 38593910 38594058 + 1.33333 NA exon (NM_152733, exon 2 of 10) exon (NM_152733, exon 2 of 10) 2083 NM_001172418 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 394.666 chr3 149208113 149208580 + 1.33333 NA intron (NM_000096, intron 4 of 18) intron (NM_000096, intron 4 of 18) 13483 NR_046371 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin protein-coding 230-31 chr8 123742356 123742857 + 1.33333 NA Intergenic MLT1C|LTR|ERVL-MaLR -5213 NM_001003954 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 123.333-33 chr12 89040442 89040808 + 1.33333 NA Intergenic Intergenic -20933 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 189.833-29 chr8 69790674 69790961 + 1.33333 NA intron (NM_001146009, intron 1 of 7) intron (NM_001146009, intron 1 of 7) 42352 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 180.166-3 chr3 133581452 133581603 + 1.33333 NA intron (NM_001282765, intron 2 of 4) intron (NM_001282765, intron 2 of 4) 7093 NM_001134423 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 499.332 chr4 33352829 33353427 + 1.33333 NA Intergenic L2b|LINE|L2 686765 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 239-6 chr14 75999447 75999813 + 1.33333 NA intron (NM_001102564, intron 2 of 8) L2c|LINE|L2 13867 NM_001255995 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 120-62 chr2 201095983 201096120 + 1.33333 NA Intergenic AluJb|SINE|Alu -20053 NM_001127184 8837 Hs.390736 NM_003879 ENSG00000003402 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP CASP8 and FADD like apoptosis regulator protein-coding 358-2 chr11 82618830 82619214 + 1.33333 NA Intergenic MLT1H2|LTR|ERVL-MaLR 114842 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 177-71 chr9 30008562 30008750 + 1.33333 NA Intergenic LTR37-int|LTR|ERV1 399798 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 407.833-2 chr11 82636060 82636670 + 1.33333 NA Intergenic L2|LINE|L2 97499 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 159.333-39 chr2 159737125 159737401 + 1.33333 NA intron (NM_001282807, intron 1 of 8) L1M4|LINE|L1 3299 NM_001282807 64844 Hs.529272 NM_022826 ENSG00000136536 MARCH7 AXO|AXOT|MARCH-VII|RNF177 membrane associated ring-CH-type finger 7 protein-coding 260-21 chr7 94401565 94401911 + 1.33333 NA intron (NM_000089, intron 6 of 51) intron (NM_000089, intron 6 of 51) 7177 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 EDSARTH2|EDSCV|OI4 collagen type I alpha 2 chain protein-coding 191.667-45 chr5 112098170 112098376 + 1.33333 NA Intergenic Intergenic -62253 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 194.5-11 chr17 58880909 58881097 + 1.33333 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 125134 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 146.333-71 chr4 15913392 15913509 + 1.33333 NA Intergenic Intergenic 25290 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 184.667-28 chr2 134345698 134345912 + 1.33333 NA intron (NM_001371457, intron 9 of 16) MER113|DNA|hAT-Charlie 91733 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 196-53 chr5 65464098 65464360 + 1.33333 NA intron (NR_135689, intron 3 of 25) Charlie4a|DNA|hAT-Charlie 17691 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 328-4 chr14 63617591 63617880 + 1.33333 NA intron (NM_080666, intron 2 of 2) AluSx1|SINE|Alu 24136 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 304.666-2 chr12 77417578 77417875 + 1.33333 NA Intergenic Intergenic -352157 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 290.333-9 chr7 97219430 97219769 + 1.33333 NA Intergenic MER106B|DNA|hAT-Charlie 103006 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 305.333-11 chr5 72812437 72812876 + 1.33333 NA Intergenic L1MB7|LINE|L1 -3935 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 140.5-19 chr12 81600158 81600484 + 1.33333 NA intron (NM_001220474, intron 2 of 30) L1MC3|LINE|L1 -1950 NM_001220478 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 158.333-59 chr5 81627432 81627741 + 1.33333 NA intron (NM_012446, intron 3 of 16) intron (NM_012446, intron 3 of 16) 123667 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 291.666-2 chr9 29661853 29662259 + 1.33333 NA Intergenic Tigger14a|DNA|TcMar-Tigger -448455 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 246.666-6 chr4 69853800 69854080 + 1.33333 NA intron (NM_005420, intron 4 of 7) MIR|SINE|MIR 6205 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 381.666 chr6 72886276 72886710 + 1.33333 NA intron (NM_001160132, intron 1 of 13) L1MEd|LINE|L1 81260 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 243.333-12 chr18 63388148 63388358 + 1.33333 NA TTS (NM_004869) TTS (NM_004869) -21047 NM_002035 2531 Hs.74050 NM_002035 ENSG00000119537 KDSR DHSR|EKVP4|FVT1|SDR35C1 3-ketodihydrosphingosine reductase protein-coding 194.666-8 chr20 45016862 45017049 + 1.33333 NA intron (NM_001352385, intron 9 of 11) intron (NM_001352385, intron 9 of 11) 50443 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 204.166 chr18 5406128 5406395 + 1.33333 NA intron (NM_001281533, intron 15 of 20) AluSz6|SINE|Alu -109208 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 248.5-18 chr6 49484498 49484734 + 1.33333 NA intron (NM_018132, intron 6 of 8) intron (NM_018132, intron 6 of 8) -15307 NM_001010904 389396 Hs.585172 NM_001010904 ENSG00000203972 GLYATL3 C6orf140|bA28H17.2 glycine-N-acyltransferase like 3 protein-coding 331.833-5 chr17 71422910 71423526 + 1.33333 NA Intergenic L1ME3Cz|LINE|L1 -221039 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 212.834-3 chr19 53306151 53306504 + 1.33333 NA Intergenic Intergenic -14893 NR_159880 112401 Hs.348263 NM_033341 ENSG00000163098 BIRC8 ILP-2|ILP2|RNF136|hILP2 baculoviral IAP repeat containing 8 pseudo 234.333-18 chr2 36192657 36193203 + 1.33333 NA Intergenic Intergenic 162640 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 166.5-50 chr5 13217479 13217806 + 1.33333 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -184756 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 177.333-49 chr5 4037366 4037557 + 1.33333 NA Intergenic Intergenic 441629 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 176.833-6 chr12 40569653 40570120 + 1.33333 NA intron (NM_173600, intron 173 of 173) intron (NM_173600, intron 173 of 173) -122553 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 155-56 chr4 121150866 121151044 + 1.33333 NA intron (NM_001128843, intron 8 of 12) intron (NM_001128843, intron 8 of 12) 13366 NM_024873 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 189-2 chr11 26701025 26701331 + 1.33333 NA intron (NM_178498, intron 6 of 14) intron (NM_178498, intron 6 of 14) 20882 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 241.333-27 chr7 53668601 53668784 + 1.33333 NA intron (NR_038371, intron 5 of 5) L1MB4|LINE|L1 143239 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 168.667-82 chr8 107037483 107037685 + 1.33333 NA Intergenic Intergenic -267340 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 210.667-33 chr3 26726064 26726616 + 1.33333 NA Intergenic Intergenic 31783 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 150.167-62 chr7 92263715 92263940 + 1.33333 NA intron (NM_019004, intron 1 of 19) intron (NM_019004, intron 1 of 19) -17727 NM_001350688 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 213-24 chr5 85776729 85777094 + 1.33333 NA Intergenic L1MD2|LINE|L1 -505533 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 170.833-13 chr15 70801165 70801334 + 1.33333 NA Intergenic MLT1H2|LTR|ERVL-MaLR -37691 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 114-10 chr1 214620949 214621109 + 1.33333 NA intron (NM_016343, intron 6 of 19) intron (NM_016343, intron 6 of 19) 17834 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 271.333-3 chr1 159524801 159525115 + 1.33333 NA Intergenic L1PB4|LINE|L1 11049 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 315.167-13 chr6 3011053 3011547 + 1.33333 NA intron (NM_001318940, intron 3 of 6) L1M3f|LINE|L1 11142 NM_001318940 4835 Hs.533050 NM_000904 ENSG00000124588 NQO2 DHQV|DIA6|NMOR2|QR2 N-ribosyldihydronicotinamide:quinone reductase 2 protein-coding 228.5-31 chr7 19770591 19770871 + 1.33333 NA intron (NM_001366627, intron 1 of 4) intron (NM_001366627, intron 1 of 4) 2050 NM_152774 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 228.166-2 chr4 118754616 118754866 + 1.33333 NA intron (NM_014822, intron 11 of 22) MER63A|DNA|hAT-Blackjack 69349 NM_020961 57721 Hs.596872 NM_020961 ENSG00000145388 METTL14 hMETTL14 methyltransferase like 14 protein-coding 185.666-2 chr10 71563981 71564239 + 1.33333 NA intron (NM_052836, intron 6 of 12) MIR|SINE|MIR -52190 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 196.333-25 chr21 29277897 29278117 + 1.33333 NA intron (NR_027072, intron 1 of 1) L1ME2|LINE|L1 -20915 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 266.666-5 chr9 110346740 110346973 + 1.33333 NA Intergenic Intergenic -8972 NM_001286947 255220 Hs.147064 NM_001003936 ENSG00000204193 TXNDC8 SPTRX-3|SPTRX3|TRX6|bA427L11.2 thioredoxin domain containing 8 protein-coding 164.166-2 chr11 36801228 36801603 + 1.33333 NA Intergenic L4_C_Mam|LINE|RTE-X -203136 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 159.667-52 chr2 81633411 81633870 + 1.33333 NA Intergenic Intergenic -166694 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 291.667-7 chr11 104337261 104337591 + 1.33333 NA Intergenic Intergenic -173279 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 319.333-7 chr2 62624590 62624935 + 1.33333 NA Intergenic L1MB7|LINE|L1 -49116 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 330.666-3 chr15 61747734 61748127 + 1.33333 NA Intergenic Intergenic 18012 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 252-19 chr8 127816278 127816648 + 1.33333 NA intron (NR_003367, intron 1 of 8) L1ME3F|LINE|L1 20501 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 241.833-12 chr3 138139674 138139954 + 1.33333 NA Intergenic L1M5|LINE|L1 -7424 NM_016161 51146 Hs.278960 NM_016161 ENSG00000118017 A4GNT alpha4GnT alpha-1,4-N-acetylglucosaminyltransferase protein-coding 256.666-4 chr5 104513117 104513322 + 1.33333 NA Intergenic Intergenic -586255 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 289.167-11 chr2 35652662 35652973 + 1.33333 NA Intergenic L1MC4|LINE|L1 181412 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 337.667-3 chr3 48045453 48045919 + 1.33333 NA intron (NM_002375, intron 1 of 18) Tigger6a|DNA|TcMar-Tigger 43162 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 331.333-8 chr4 26676811 26677153 + 1.33333 NA intron (NM_001292054, intron 8 of 17) L2|LINE|L2 92898 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 237.666 chr4 33321777 33322030 + 1.33333 NA Intergenic Intergenic 717990 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 277.833-8 chr5 120778790 120779204 + 1.33333 NA Intergenic Intergenic 247533 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 276-15 chr6 73038793 73039017 + 1.33333 NA intron (NM_001160132, intron 2 of 13) L1MD2|LINE|L1 -71152 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 219.333-45 chrX 125357378 125357711 + 1.33333 NA Intergenic MLT-int|LTR|ERVL-MaLR 37673 NM_001195272 100129520 NM_001195272 ENSG00000282815 TEX13C - TEX13 family member C protein-coding 410.333 chr8 18725986 18726741 + 1.33333 NA intron (NM_015310, intron 9 of 15) intron (NM_015310, intron 9 of 15) 82504 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 273.333-15 chr4 11755197 11755509 + 1.33333 NA intron (NR_146995, intron 1 of 3) intron (NR_146995, intron 1 of 3) 14115 NR_146995 105374484 Hs.581972 NR_146995 ENSG00000248300 LINC02360 - long intergenic non-protein coding RNA 2360 ncRNA 126.333-34 chr14 77602557 77602721 + 1.33333 NA intron (NM_004863, intron 1 of 11) AluJb|SINE|Alu 14128 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 305.833-4 chr3 137323480 137323884 + 1.33333 NA Intergenic L1MC5|LINE|L1 365699 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 240-28 chr4 31721634 31721898 + 1.33333 NA Intergenic L2c|LINE|L2 215222 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 259.334 chr12 129999362 129999759 + 1.33333 NA Intergenic MLT1J2|LTR|ERVL-MaLR 42782 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 327.333-9 chr4 120876994 120877345 + 1.33333 NA intron (NM_001300824, intron 2 of 13) intron (NM_001300824, intron 2 of 13) 45697 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 157.167-14 chr10 54832794 54833041 + 1.33333 NA intron (NM_001354404, intron 4 of 34) MIR3|SINE|MIR -31626 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 171.666-2 chr3 71088727 71088898 + 1.33333 NA intron (NR_146142, intron 7 of 19) intron (NR_146142, intron 7 of 19) -23888 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 362.334-3 chr5 116561249 116561799 + 1.33333 NA intron (NM_001300780, intron 1 of 19) intron (NM_001300780, intron 1 of 19) -12894 NR_147170 105379132 NR_147170 SEMA6A-AS2 - SEMA6A antisense RNA 2 ncRNA 225.667-37 chr9 124649919 124650224 + 1.33333 NA intron (NM_033334, intron 2 of 9) L1MA4|LINE|L1 -8365 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 231.333-33 chr8 92490233 92490470 + 1.33333 NA Intergenic Intergenic 165143 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 165.333-75 chrX 72582787 72582968 + 1.33333 NA intron (NM_002637, intron 30 of 31) L1ME4c|LINE|L1 -9774 NM_001166420 55869 Hs.310536 NM_018486 ENSG00000147099 HDAC8 CDA07|CDLS5|HD8|HDACL1|KDAC8|MRXS6|RPD3|WTS histone deacetylase 8 protein-coding 315-2 chr11 42619973 42620432 + 1.33333 NA Intergenic Intergenic -366512 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 183.666 chr14 81878867 81879079 + 1.33333 NA Intergenic L1MCa|LINE|L1 -135835 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 222.167-15 chr14 71131360 71131718 + 1.33333 NA Intergenic MER49|LTR|ERV1 -188937 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 287.333-5 chr21 26794825 26795119 + 1.33333 NA Intergenic L1PA17|LINE|L1 50437 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 285-5 chr5 80087818 80088078 + 1.33333 NA Intergenic MamRep1151|LTR?|LTR? -4283 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 186.667-26 chr15 87029625 87029886 + 1.33333 NA TTS (NM_152336) TTS (NM_152336) -41329 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 281.167-8 chr6 64074698 64075054 + 1.33333 NA intron (NM_001292009, intron 32 of 43) intron (NM_001292009, intron 32 of 43) 268040 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 192.167-2 chr10 6346552 6346839 + 1.33333 NA Intergenic Tigger12c|DNA|TcMar-Tigger -3621 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 234-10 chr13 113245144 113245432 + 1.33333 NA intron (NM_001008895, intron 14 of 19) AluJr|SINE|Alu -17632 NR_107042 102465874 NR_107042 ENSG00000277942 MIR8075 hsa-mir-8075 microRNA 8075 ncRNA 169.666-2 chr4 107122625 107122794 + 1.33333 NA Intergenic Intergenic -86396 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 253.666-5 chr9 5176604 5176844 + 1.33333 NA intron (NM_007179, intron 1 of 1) L1ME5|LINE|L1 8915 NM_007179 11172 Hs.632648 NM_007179 ENSG00000120210 INSL6 RIF1 insulin like 6 protein-coding 336.999 chr13 75362733 75363137 + 1.33333 NA intron (NM_001286658, intron 1 of 19) intron (NM_001286658, intron 1 of 19) 119233 NM_001286659 9882 Hs.210891 NM_014832 ENSG00000136111 TBC1D4 AS160|NIDDM5 TBC1 domain family member 4 protein-coding 159.5-45 chr6 46716547 46716986 + 1.33333 NA intron (NM_005084, intron 3 of 11) intron (NM_005084, intron 3 of 11) 18609 NM_005084 7941 Hs.584823 NM_005084 ENSG00000146070 PLA2G7 LDL-PLA2|LP-PLA2|PAFAD|PAFAH phospholipase A2 group VII protein-coding 371.833-2 chr3 168904855 168905210 + 1.33333 NA intron (NR_109989, intron 2 of 4) intron (NR_109989, intron 2 of 4) 3087 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 204.833-13 chr2 66602124 66602474 + 1.33333 NA intron (NR_110156, intron 1 of 5) intron (NR_110156, intron 1 of 5) 28269 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 290.667-5 chr18 2266854 2267231 + 1.33333 NA Intergenic L2b|LINE|L2 304463 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 196-11 chr10 89491998 89492229 + 1.33333 NA intron (NM_213606, intron 2 of 7) intron (NM_213606, intron 2 of 7) 36122 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 214-21 chr2 63437834 63438266 + 1.33333 NA promoter-TSS (NR_122106) promoter-TSS (NR_122106) -43 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 308.666 chr2 61011952 61012303 + 1.33333 NA intron (NM_144709, intron 1 of 17) intron (NM_144709, intron 1 of 17) 5085 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 234.333-15 chr17 70832888 70833159 + 1.33333 NA Intergenic Intergenic 369156 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 124.667-9 chr1 192232558 192232732 + 1.33333 NA Intergenic Intergenic 74183 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 176-8 chr14 37277918 37278230 + 1.33333 NA intron (NM_138731, intron 7 of 13) intron (NM_138731, intron 7 of 13) 80137 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 350-5 chr4 30779443 30779954 + 1.33333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 59329 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 250.833-14 chr9 38699427 38699683 + 1.33333 NA Intergenic LTR16B1|LTR|ERVL 78467 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 258.5 chr1 86695902 86696151 + 1.33333 NA intron (NR_135837, intron 3 of 4) intron (NR_135837, intron 3 of 4) 8467 NR_135838 105378828 Hs.175285 NR_135837 ENSG00000261737 CLCA4-AS1 - CLCA4 antisense RNA 1 ncRNA 492.332 chr9 34109919 34110701 + 1.33333 NA intron (NM_015397, intron 2 of 8) L2c|LINE|L2 16388 NM_015397 25853 Hs.493750 NM_015397 ENSG00000198876 DCAF12 CT102|KIAA1892|TCC52|WDR40A DDB1 and CUL4 associated factor 12 protein-coding 173.167-43 chr7 47511185 47511430 + 1.33333 NA intron (NM_022748, intron 2 of 30) Charlie1a|DNA|hAT-Charlie -46504 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 278.167-2 chr10 112924784 112925280 + 1.33333 NA Intergenic AluJr4|SINE|Alu -25215 NM_001198527 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 142.333-43 chr18 1960765 1960896 + 1.33333 NA Intergenic Intergenic -601201 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 252.5-12 chr2 71203829 71204198 + 1.33333 NA intron (NM_020459, intron 1 of 3) intron (NM_020459, intron 1 of 3) 23090 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 123.667-99 chr7 4258407 4258636 + 1.33333 NA intron (NM_001079653, intron 18 of 19) L4_C_Mam|LINE|RTE-X -123684 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 229-30 chr4 62035919 62036285 + 1.33333 NA intron (NM_001371343, intron 21 of 23) intron (NM_001371343, intron 21 of 23) 125663 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 272.333-10 chr15 92351665 92351910 + 1.33333 NA Intergenic MER63A|DNA|hAT-Blackjack -42094 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 144-55 chr4 64423344 64423502 + 1.33333 NA Intergenic Intergenic -13963 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 376.666 chr1 190589751 190590181 + 1.33333 NA Intergenic Intergenic -34924 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 193.167-37 chr8 52301047 52301346 + 1.33333 NA intron (NR_148195, intron 2 of 3) L1M5|LINE|L1 -46704 NM_001352842 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 155-50 chr3 67487842 67487965 + 1.33333 NA intron (NM_001177599, intron 9 of 10) L1ME4c|LINE|L1 166711 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 157-73 chr7 6149471 6149747 + 1.33333 NA exon (NM_001365764, exon 13 of 16) exon (NM_001365764, exon 13 of 16) 22528 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 222.166 chr11 102736496 102736848 + 1.33333 NA Intergenic Intergenic -11718 NM_001304442 4317 Hs.161839 NM_002424 ENSG00000118113 MMP8 CLG1|HNC|MMP-8|PMNL-CL matrix metallopeptidase 8 protein-coding 237.333-11 chr18 6022670 6022947 + 1.33333 NA intron (NR_158609, intron 15 of 17) intron (NR_158609, intron 15 of 17) -126854 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 123.833-9 chr10 108556660 108556847 + 1.33333 NA Intergenic L1MC1|LINE|L1 -487460 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 140.333-87 chr8 113853618 113853820 + 1.33333 NA Intergenic L1MA9|LINE|L1 -416780 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 182-16 chr14 74382311 74382514 + 1.33333 NA Intergenic AluJo|SINE|Alu 33941 NM_018228 55237 Hs.578167 NM_018228 ENSG00000133980 VRTN C14orf115|vertnin vertebrae development associated protein-coding 178.166-3 chr3 195359343 195359503 + 1.33333 NA intron (NM_012287, intron 4 of 22) L1M1|LINE|L1 83597 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 259.666-5 chr6 78335952 78336222 + 1.33333 NA Intergenic Intergenic 203222 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 421.333-2 chr8 131719948 131720717 + 1.33333 NA Intergenic L2c|LINE|L2 -183761 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 388.166-2 chr9 36988502 36989110 + 1.33333 NA intron (NM_001280554, intron 4 of 8) MIRb|SINE|MIR 45462 NM_001280554 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 144-80 chr9 72750183 72750358 + 1.33333 NA intron (NM_138691, intron 10 of 23) intron (NM_138691, intron 10 of 23) 123839 NR_121181 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 246.666-3 chr16 70158203 70158525 + 1.33333 NA 3' UTR (NM_017990, exon 19 of 19) 3' UTR (NM_017990, exon 19 of 19) 15084 NR_126007 400541 Hs.461183 NR_126007 ENSG00000247228 LOC400541 - uncharacterized LOC400541 ncRNA 217.333-23 chr4 32611276 32611453 + 1.33333 NA Intergenic MIRb|SINE|MIR 260326 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 287.333-12 chr7 46691158 46691543 + 1.33333 NA intron (NR_134575, intron 2 of 2) L1M4|LINE|L1 5772 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 394.667-2 chr12 81739630 81740151 + 1.33333 NA intron (NM_003625, intron 3 of 32) intron (NM_003625, intron 3 of 32) 18617 NM_001220475 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 218.667-27 chr5 86437867 86438150 + 1.33333 NA Intergenic Intergenic 155564 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 243.499 chr2 13903395 13903595 + 1.33333 NA Intergenic L1MD|LINE|L1 497463 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 140.666-3 chr8 4004028 4004170 + 1.33333 NA intron (NM_033225, intron 4 of 69) intron (NM_033225, intron 4 of 69) 990815 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 417.333 chr13 77810900 77811701 + 1.33333 NA Intergenic Intergenic -7637 NR_103853 100505518 Hs.742215 NR_103853 EDNRB-AS1 - EDNRB antisense RNA 1 ncRNA 272-11 chr5 28287699 28288027 + 1.33333 NA promoter-TSS (NR_134265) promoter-TSS (NR_134265) -198 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 484.833 chr2 77623401 77623910 + 1.33333 NA Intergenic Intergenic -101222 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 167-58 chr7 105953762 105953959 + 1.33333 NA Intergenic L1MEd|LINE|L1 -9404 NM_001301161 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding 172-6 chr10 132178215 132178445 + 1.33333 NA intron (NM_001105521, intron 24 of 24) intron (NM_001105521, intron 24 of 24) -8618 NM_006426 10570 Hs.100058 NM_006426 ENSG00000151640 DPYSL4 CRMP3|DRP-4|ULIP4 dihydropyrimidinase like 4 protein-coding 256.666 chr14 62942073 62942314 + 1.33333 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 103265 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 408.666-3 chr18 75380548 75381113 + 1.33333 NA Intergenic Intergenic 46873 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 353.333-3 chr12 123778016 123778394 + 1.33333 NA intron (NM_207437, intron 5 of 77) AluJr|SINE|Alu 15710 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 390.333-3 chr5 147377525 147378168 + 1.33333 NA intron (NM_001112724, intron 11 of 12) L1MB4|LINE|L1 75846 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 232-18 chr3 103361578 103361802 + 1.33333 NA Intergenic Intergenic 162426 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 376 chr2 57980257 57980682 + 1.33333 NA intron (NM_001288838, intron 1 of 15) L1PA15|LINE|L1 -66173 NM_001288836 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 579.166 chr11 81803625 81804323 + 1.33333 NA Intergenic Intergenic 86862 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 172-55 chr5 136643134 136643375 + 1.33333 NA Intergenic Intergenic -277778 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 545.166 chr12 24962865 24963578 + 1.33333 NA Intergenic L1M1|LINE|L1 -14120 NM_005504 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 190-26 chr2 39028437 39028690 + 1.33333 NA intron (NM_005633, intron 8 of 22) intron (NM_005633, intron 8 of 22) -68219 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 191.333-42 chrX 45614585 45614753 + 1.33333 NA Intergenic L1MA9|LINE|L1 109281 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 238.666 chr1 118798968 118799258 + 1.33333 NA Intergenic L1MA7|LINE|L1 189230 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 186.667-78 chr8 45998549 45998811 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr 618963 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 194-36 chr3 25652984 25653139 + 1.33333 NA intron (NM_001330700, intron 1 of 35) L1MB2|LINE|L1 11311 NM_001068 7155 Hs.475733 NM_001068 ENSG00000077097 TOP2B TOPIIB|top2beta DNA topoisomerase II beta protein-coding 245.333-19 chr6 62778060 62778271 + 1.33333 NA Intergenic Intergenic -491938 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 240.667-25 chr3 36285966 36286280 + 1.33333 NA Intergenic L1ME3D|LINE|L1 -94364 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 233.333-35 chr4 108074796 108074980 + 1.33333 NA intron (NM_001130713, intron 7 of 10) intron (NM_001130713, intron 7 of 10) 70224 NM_001331027 3033 Hs.438289 NM_005327 ENSG00000138796 HADH HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD hydroxyacyl-CoA dehydrogenase protein-coding 261.167-3 chr12 19184131 19184391 + 1.33333 NA intron (NM_019012, intron 3 of 25) MER131|DNA?|DNA? -21064 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 319.5-4 chr3 116308408 116308924 + 1.33333 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -51358 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 255.666-2 chr4 46683396 46683639 + 1.33333 NA Intergenic Intergenic 225728 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 237.167-5 chr12 79666758 79667079 + 1.33333 NA intron (NM_001354732, intron 2 of 6) MER4B|LTR|ERV1 23662 NM_001354732 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 252.166 chr14 68797840 68798158 + 1.33333 NA Intergenic L1ME1|LINE|L1 -1756 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 330.333-2 chr17 51758751 51759204 + 1.33333 NA intron (NM_001082533, intron 4 of 9) MIRb|SINE|MIR 323550 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 167.333-48 chr4 56648349 56648635 + 1.33333 NA 3' UTR (NM_001145460, exon 5 of 5) 3' UTR (NM_001145460, exon 5 of 5) 8030 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 271.333-17 chr8 117874646 117874958 + 1.33333 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 46111 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 260 chr1 43519040 43519321 + 1.33333 NA Intergenic Intergenic -6857 NM_001329137 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 114.833-66 chr7 114106086 114106225 + 1.33333 NA intron (NR_033766, intron 1 of 19) MIRb|SINE|MIR 19828 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 226.833-19 chr6 40639429 40639677 + 1.33333 NA Intergenic Intergenic -52189 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 144-58 chr5 5944323 5944585 + 1.33333 NA Intergenic Intergenic 392838 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 193.333-2 chr1 72237050 72237279 + 1.33333 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 45375 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 376-2 chr3 178313088 178313593 + 1.33333 NA Intergenic Intergenic -105861 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 217-22 chr3 139850622 139850899 + 1.33333 NA Intergenic L1PA16|LINE|L1 -84425 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 296.666-7 chr8 131806326 131806649 + 1.33333 NA Intergenic L2a|LINE|L2 -97606 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 209.666 chr15 92350829 92351045 + 1.33333 NA Intergenic MIRb|SINE|MIR -42944 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 204-21 chr20 36703691 36703986 + 1.33333 NA intron (NM_022477, intron 2 of 14) intron (NM_022477, intron 2 of 14) 42252 NM_022477 57446 Hs.437338 NM_022477 ENSG00000101079 NDRG3 - NDRG family member 3 protein-coding 287.333-6 chr3 165449500 165449761 + 1.33333 NA intron (NR_125764, intron 3 of 5) intron (NR_125764, intron 3 of 5) 242670 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 266.5-11 chr3 118286917 118287247 + 1.33333 NA Intergenic L1M5|LINE|L1 -354686 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 200-3 chr10 10485706 10485959 + 1.33333 NA intron (NM_001326317, intron 1 of 14) intron (NM_001326317, intron 1 of 14) 23282 NM_001326319 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 472.166-2 chr8 78664205 78664902 + 1.33333 NA Intergenic Intergenic -1536 NM_016010 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 358.166 chr2 187395457 187395925 + 1.33333 NA intron (NM_005795, intron 1 of 14) intron (NM_005795, intron 1 of 14) 52561 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 220.667-26 chr4 88106222 88106488 + 1.33333 NA intron (NM_001257386, intron 10 of 15) L1MB3|LINE|L1 52284 NM_004827 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 477 chr5 129198862 129199258 + 1.33333 NA Intergenic Intergenic 101372 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 553.5 chr3 191984261 191984921 + 1.33333 NA Intergenic L2a|LINE|L2 -254039 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 156.166 chr18 28909441 28909636 + 1.33333 NA Intergenic Intergenic -732408 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 314.166-2 chr2 121178345 121178649 + 1.33333 NA Intergenic L1M8|LINE|L1 106705 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 131.333-47 chr2 18331141 18331297 + 1.33333 NA Intergenic MLT1E1A-int|LTR|ERVL-MaLR 229434 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 228.667-9 chr11 106529481 106529792 + 1.33333 NA Intergenic Intergenic 278229 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 281.666-3 chr7 94592902 94593231 + 1.33333 NA intron (NM_001346717, intron 8 of 9) intron (NM_001346717, intron 8 of 9) 63067 NM_001346713 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 195.666-6 chr3 39733870 39734096 + 1.33333 NA Intergenic Intergenic -74931 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 225.333 chr1 105680224 105680458 + 1.33333 NA Intergenic L1MA1|LINE|L1 -61406 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 348-8 chr7 50057605 50058106 + 1.33333 NA intron (NM_001159878, intron 4 of 7) intron (NM_001159878, intron 4 of 7) 35391 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 173 chr1 6912202 6912410 + 1.33333 NA intron (NM_001349608, intron 2 of 21) intron (NM_001349608, intron 2 of 21) 126852 NM_015215 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 229.333-5 chr10 55517932 55518274 + 1.33333 NA intron (NM_001354404, intron 2 of 34) MER67A|LTR|ERV1 -80939 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 266.333-12 chr5 14636749 14637043 + 1.33333 NA Intergenic Intergenic 15486 NR_132981 106635684 NR_132981 SNORD141B - small nucleolar RNA, C/D box 141B snoRNA 203-19 chr2 58392761 58392949 + 1.33333 NA Intergenic L1ME3E|LINE|L1 116978 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 240.333-4 chr10 107694438 107694651 + 1.33333 NA Intergenic L3|LINE|CR1 374749 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 239.5-12 chr2 182856611 182856947 + 1.33333 NA intron (NM_001463, intron 2 of 5) L1MEf|LINE|L1 9858 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 396.833 chr1 21770799 21771409 + 1.33333 NA intron (NM_001350167, intron 1 of 26) AluSx|SINE|Alu 12045 NM_001350168 84196 Hs.467524 NM_032236 ENSG00000090686 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 261.333-25 chr7 81742314 81742538 + 1.33333 NA TTS (NM_001010931) TTS (NM_001010931) 27621 NM_001010931 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 247.333-13 chr3 123204170 123204466 + 1.33333 NA intron (NM_012430, intron 1 of 6) MER113B|DNA|hAT-Charlie 2375 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 273.333-9 chr17 65922811 65923178 + 1.33333 NA intron (NM_001353129, intron 19 of 26) intron (NM_001353129, intron 19 of 26) -96451 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 329.333-7 chr5 83261916 83262203 + 1.33333 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) 184512 NM_001318012 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 138.667-91 chr7 33245568 33245708 + 1.33333 NA intron (NM_198428, intron 5 of 22) L2a|LINE|L2 116074 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 164.167-38 chr2 164838624 164838867 + 1.33333 NA intron (NM_001278458, intron 2 of 16) intron (NM_001278458, intron 2 of 16) -2004 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 369.833-4 chr8 99371254 99371635 + 1.33333 NA intron (NM_017890, intron 19 of 61) L1PA8|LINE|L1 165286 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 160.666-3 chr11 107561741 107562053 + 1.33333 NA intron (NM_001301010, intron 1 of 11) intron (NM_001301010, intron 1 of 11) 3838 NM_138775 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9|TRMT9A alkB homolog 8, tRNA methyltransferase protein-coding 134-82 chr4 70637291 70637395 + 1.33333 NA promoter-TSS (NM_001368133) promoter-TSS (NM_001368133) -368 NM_001368133 10117 Hs.667018 NM_031889 ENSG00000132464 ENAM ADAI|AI1C|AIH2 enamelin protein-coding 357.999-2 chr8 116549816 116550140 + 1.33333 NA Intergenic MLT2C2|LTR|ERVL -102122 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 182.333-43 chr3 80301457 80301688 + 1.33333 NA Intergenic L1MEf|LINE|L1 -463325 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 300.333-6 chr12 116476899 116477210 + 1.33333 NA Intergenic AluSp|SINE|Alu -48736 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 366.667-2 chr12 115838813 115839374 + 1.33333 NA Intergenic L2b|LINE|L2 309561 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 415-2 chr8 15041493 15041860 + 1.33333 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) -188166 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 149.833-52 chr7 91350445 91350647 + 1.33333 NA Intergenic Intergenic 86113 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 228-6 chr11 71068434 71068687 + 1.33333 NA intron (NM_012309, intron 8 of 24) intron (NM_012309, intron 8 of 24) 156236 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 382.333-5 chr4 40793840 40794212 + 1.33333 NA intron (NM_024677, intron 8 of 11) intron (NM_024677, intron 8 of 11) 44071 NM_024677 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 185.333-46 chr4 177089645 177089911 + 1.33333 NA Intergenic Intergenic 214076 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 315.667-3 chr14 47895245 47895633 + 1.33333 NA Intergenic Intergenic -100425 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 290.166-4 chr9 82352334 82352719 + 1.33333 NA Intergenic Intergenic 363754 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 149.833-37 chr5 33283024 33283280 + 1.33333 NA Intergenic Charlie2b|DNA|hAT-Charlie 53417 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 364 chr14 59330031 59330780 + 1.33333 NA intron (NM_001270520, intron 12 of 24) intron (NM_001270520, intron 12 of 24) 66964 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 155.666-4 chrX 35051133 35051325 + 1.33333 NA Intergenic Intergenic 108433 NM_152631 170062 Hs.197801 NM_152631 ENSG00000189132 FAM47B - family with sequence similarity 47 member B protein-coding 182.166 chr6 28086937 28087091 + 1.33333 NA intron (NM_003447, intron 3 of 3) intron (NM_003447, intron 3 of 3) -3793 NR_024063 221584 Hs.634723 NR_024063 ZSCAN12P1 ZNF187p1|ZNF305P1|ZNF96L1|ZNF96P1|ZSCAN12L1|dJ313I6.7 zinc finger and SCAN domain containing 12 pseudogene 1 pseudo 444.333 chr14 73180435 73180815 + 1.33333 NA intron (NM_000021, intron 5 of 11) intron (NM_000021, intron 5 of 11) 44118 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 300-2 chr15 67618373 67618734 + 1.33333 NA intron (NM_001206804, intron 8 of 21) L2a|LINE|L2 69459 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 171.833-25 chr21 27729236 27729713 + 1.33333 NA intron (NR_024357, intron 1 of 3) L1MEf|LINE|L1 7095 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 150.666-5 chr4 117488932 117489091 + 1.33333 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 60613 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 273.999 chr1 5900887 5901092 + 1.33333 NA intron (NR_111987, intron 16 of 32) AluJb|SINE|Alu -38248 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 213.333-24 chr21 30768413 30768704 + 1.33333 NA Intergenic Intergenic -13130 NM_181619 337977 Hs.567837 NM_181619 ENSG00000187005 KRTAP21-1 KAP21.1 keratin associated protein 21-1 protein-coding 280-22 chr9 127235697 127235954 + 1.33333 NA Intergenic L2|LINE|L2 -27837 NM_001286779 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding 347-4 chr3 28870649 28870952 + 1.33333 NA Intergenic Intergenic 295522 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 165.5-47 chr5 120079421 120079630 + 1.33333 NA Intergenic L1M5|LINE|L1 -384753 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 435.5-2 chr4 93907988 93908546 + 1.33333 NA Intergenic MIR|SINE|MIR 79514 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 281.333-8 chr2 158380702 158380941 + 1.33333 NA intron (NM_138803, intron 1 of 13) L1M5|LINE|L1 75932 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 205.333-25 chr2 76364629 76364978 + 1.33333 NA Intergenic Intergenic -621162 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 132-59 chr4 30809987 30810148 + 1.33333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 89698 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 248.666-5 chr9 94774644 94774903 + 1.33333 NA intron (NM_001193331, intron 3 of 7) L1M6|LINE|L1 15124 NM_001193329 84909 Hs.434253 NM_032823 ENSG00000148120 AOPEP AP-O|APO|C90RF3|C9orf3|ONPEP aminopeptidase O (putative) protein-coding 330 chr1 84257608 84257966 + 1.33333 NA Intergenic Intergenic -40751 NM_001010971 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 448.333 chr10 18707392 18707839 + 1.33333 NA Intergenic L1MC1|LINE|L1 48184 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 225.333-28 chr7 36516928 36517187 + 1.33333 NA intron (NM_001177506, intron 20 of 21) L2b|LINE|L2 83063 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 310.667-8 chr8 84965410 84965814 + 1.33333 NA Intergenic Intergenic -141626 NM_001349637 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 160-72 chr9 5317536 5317708 + 1.33333 NA Intergenic Intergenic -12906 NM_134441 6019 Hs.127032 NM_005059 ENSG00000107014 RLN2 H2|H2-RLX|RLXH2|bA12D24.1.1|bA12D24.1.2 relaxin 2 protein-coding 117.667-95 chr5 5176703 5176856 + 1.33333 NA intron (NM_139056, intron 3 of 22) intron (NM_139056, intron 3 of 22) 36449 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 172.667-27 chr15 26906531 26906780 + 1.33333 NA intron (NM_001165037, intron 6 of 10) intron (NM_001165037, intron 6 of 10) 39529 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 230-29 chr8 105920537 105920758 + 1.33333 NA intron (NR_125796, intron 2 of 7) L1PA17|LINE|L1 139856 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 197.666-5 chr3 71827581 71827760 + 1.33333 NA Intergenic Intergenic -42522 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 217.667-55 chr9 104857688 104857960 + 1.33333 NA intron (NM_005502, intron 7 of 49) intron (NM_005502, intron 7 of 49) 70331 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 295.333-3 chr14 46923405 46923788 + 1.33333 NA intron (NM_001113498, intron 9 of 16) intron (NM_001113498, intron 9 of 16) -271815 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 141.333-29 chr14 47024299 47024536 + 1.33333 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) 318829 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 199.333-20 chr2 77882379 77882768 + 1.33333 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -33361 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 288.334-2 chr15 48771937 48772329 + 1.33333 NA intron (NM_014985, intron 13 of 25) AluJb|SINE|Alu 38936 NM_014985 22995 Hs.443005 NM_014985 ENSG00000103995 CEP152 MCPH4|MCPH9|SCKL5 centrosomal protein 152 protein-coding 135.833-56 chr5 23477030 23477164 + 1.33333 NA Intergenic LTR34|LTR|ERV1 -30512 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 183.666-3 chr9 69554364 69554599 + 1.33333 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 117890 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 348.666 chr11 30418354 30418735 + 1.33333 NA intron (NM_001584, intron 3 of 5) intron (NM_001584, intron 3 of 5) 95440 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 153.333-38 chr2 38460082 38460241 + 1.33333 NA intron (NR_110259, intron 4 of 4) AluJb|SINE|Alu 28867 NR_146454 100996902 Hs.128280 NR_146454 ENSG00000235009 LINC01883 - long intergenic non-protein coding RNA 1883 ncRNA 277.333-12 chr4 59701456 59701712 + 1.33333 NA Intergenic AluSz6|SINE|Alu 688011 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 117.333-31 chr14 53720747 53720876 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger 227673 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 212-23 chr22 48844036 48844223 + 1.33333 NA Intergenic Intergenic -22641 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 208.833-23 chr3 97409091 97409307 + 1.33333 NA intron (NM_001080448, intron 6 of 17) intron (NM_001080448, intron 6 of 17) -30408 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 244-13 chr4 108925958 108926269 + 1.33333 NA intron (NR_045756, intron 7 of 35) intron (NR_045756, intron 7 of 35) -163060 NM_001331033 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 275.833-8 chr4 93485644 93486002 + 1.33333 NA intron (NM_001286838, intron 10 of 14) L1ME3B|LINE|L1 -342930 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 174.666-3 chr7 49361723 49361912 + 1.33333 NA Intergenic L1MB8|LINE|L1 -411821 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 304-8 chr7 116816264 116816696 + 1.33333 NA Intergenic MIRc|SINE|MIR -46107 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 194.666-6 chr2 103119914 103120102 + 1.33333 NA Intergenic Intergenic -135579 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 320.833-3 chr21 26180871 26181634 + 1.33333 NA Intergenic MLT2B2|LTR|ERVL -10124 NM_001136131 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 302.833 chr10 62719490 62719884 + 1.33333 NA Intergenic L2-1_AMi|LINE|L2 -85033 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 358.666 chr20 8210144 8210577 + 1.33333 NA intron (NM_182734, intron 2 of 32) Charlie2a|DNA|hAT-Charlie -38344 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 266.666-2 chr15 77389959 77390182 + 1.33333 NA intron (NM_024776, intron 1 of 7) MIRb|SINE|MIR 30034 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 135.666 chr1 191332434 191332596 + 1.33333 NA Intergenic L1M5|LINE|L1 -104017 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 191-40 chr22 26983144 26983410 + 1.33333 NA Intergenic Intergenic 77241 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 157.666-2 chr9 71233660 71233844 + 1.33333 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -112131 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 154.333-8 chr10 57199750 57199976 + 1.33333 NA Intergenic Intergenic 104696 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 184.666 chr1 164285540 164285733 + 1.33333 NA Intergenic L1MCa|LINE|L1 -273724 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 176.167-2 chr1 87014564 87014991 + 1.33333 NA intron (NM_012262, intron 1 of 6) MER65A|LTR|ERV1 100142 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 287.167-4 chr12 66262570 66263064 + 1.33333 NA Intergenic L1ME4a|LINE|L1 11735 NR_106757 102465249 NR_106757 ENSG00000284011 MIR6502 hsa-mir-6502 microRNA 6502 ncRNA 215.333-34 chr4 88191572 88191795 + 1.33333 NA intron (NM_001257386, intron 1 of 15) L1MB7|LINE|L1 -32360 NM_001348989 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 204.667-7 chr10 70262261 70262565 + 1.33333 NA intron (NM_022146, intron 2 of 3) L1MC4a|LINE|L1 21591 NM_022146 64106 Hs.302026 NM_022146 ENSG00000148734 NPFFR1 GPR147|NPFF1|NPFF1R1|OT7T022 neuropeptide FF receptor 1 protein-coding 259.333-2 chr10 13469947 13470192 + 1.33333 NA intron (NM_001370075, intron 5 of 8) intron (NM_001370075, intron 5 of 8) 32907 NM_152751 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 126-89 chr7 71773894 71774044 + 1.33333 NA Intergenic L2b|LINE|L2 -466199 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 178.333-42 chr5 83352350 83352545 + 1.33333 NA intron (NM_022550, intron 7 of 7) OldhAT1|DNA|hAT-Ac -119227 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 226.333-39 chr8 99745452 99745850 + 1.33333 NA intron (NM_017890, intron 39 of 61) MER44A|DNA|TcMar-Tigger 148056 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 234-31 chr5 73001614 73001868 + 1.33333 NA intron (NM_001146032, intron 5 of 24) AluJo|SINE|Alu 45700 NM_138782 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 185.5-30 chr4 44534958 44535145 + 1.33333 NA Intergenic Tigger17a|DNA|TcMar-Tigger -86242 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 128.666-2 chr8 116456841 116456989 + 1.33333 NA Intergenic Intergenic -131856 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 210.666-5 chr4 101008027 101008194 + 1.33333 NA Intergenic Intergenic 232762 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 138.666-2 chr3 27571767 27571883 + 1.33333 NA Intergenic MamTip3|DNA|hAT-Tip100 -87441 NM_001321106 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 180.833-33 chr4 47909896 47910115 + 1.33333 NA intron (NR_103795, intron 3 of 23) intron (NR_103795, intron 3 of 23) -4222 NR_125879 101927157 Hs.134190 NR_125879 LOC101927157 - uncharacterized LOC101927157 ncRNA 186.833-10 chr13 20899528 20899753 + 1.33333 NA intron (NM_022459, intron 1 of 22) intron (NM_022459, intron 1 of 22) 3134 NM_022459 64328 Hs.507452 NM_022459 ENSG00000132953 XPO4 exp4 exportin 4 protein-coding 258.333-18 chr18 71490301 71490598 + 1.33333 NA Intergenic Intergenic 88507 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 166.667-61 chr8 16482711 16482916 + 1.33333 NA Intergenic Intergenic -290022 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 209.999 chr14 48870121 48870285 + 1.33333 NA Intergenic UCON14|DNA?|DNA? 716177 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 282-5 chr10 66464176 66464454 + 1.33333 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -461721 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 164-59 chr5 143349427 143349651 + 1.33333 NA intron (NR_157096, intron 1 of 7) intron (NR_157096, intron 1 of 7) 53744 NM_001364182 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 298.333-8 chr18 65226924 65227482 + 1.33333 NA Intergenic Intergenic -523049 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 153.333-16 chr13 35093521 35093680 + 1.33333 NA intron (NM_015678, intron 10 of 57) intron (NM_015678, intron 10 of 57) 151313 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 390.666 chr13 71589801 71590277 + 1.33333 NA intron (NM_001366712, intron 3 of 11) intron (NM_001366712, intron 3 of 11) 277153 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 282.333-9 chr18 70713397 70713698 + 1.33333 NA Intergenic L2c|LINE|L2 -62593 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 456.999-2 chr18 23027122 23027566 + 1.33333 NA TTS (NM_203292) TTS (NM_203292) 93468 NM_203292 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 205.833-24 chr3 157452403 157452560 + 1.33333 NA intron (NM_024621, intron 4 of 13) L3|LINE|CR1 15631 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 179.333-17 chr13 87500372 87500578 + 1.33333 NA intron (NR_033829, intron 2 of 5) MIRb|SINE|MIR 118265 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 170.166-2 chr9 91520717 91520995 + 1.33333 NA Intergenic L1MB3|LINE|L1 -96230 NM_001289999 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 324-7 chr21 29792164 29792671 + 1.33333 NA intron (NM_000830, intron 1 of 16) MER135|DNA|DNA 44242 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 393-5 chr4 64645974 64646546 + 1.33333 NA Intergenic Intergenic -236800 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 178.833-21 chr2 183035390 183035608 + 1.33333 NA intron (NM_205842, intron 1 of 31) intron (NM_205842, intron 1 of 31) 2958 NM_013436 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 273.166 chr1 45522232 45522552 + 1.33333 NA promoter-TSS (NM_002574) promoter-TSS (NM_002574) -454 NM_002574 5052 Hs.180909 NM_002574 ENSG00000117450 PRDX1 MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2 peroxiredoxin 1 protein-coding 336.666-3 chr14 42200281 42200679 + 1.33333 NA Intergenic Intergenic 593624 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 209.667-22 chr2 44712119 44712461 + 1.33333 NA intron (NM_024766, intron 6 of 10) intron (NM_024766, intron 6 of 10) 226598 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 133.167-39 chr3 76554408 76554617 + 1.33333 NA Intergenic Intergenic -485587 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 157.833-7 chr10 44075519 44075739 + 1.33333 NA Intergenic Tigger4a|DNA|TcMar-Tigger 163227 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 276.833-5 chr4 133808153 133808503 + 1.33333 NA Intergenic Intergenic 393461 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 215.333-44 chr6 50745899 50746150 + 1.33333 NA intron (NM_172238, intron 6 of 7) intron (NM_172238, intron 6 of 7) 32480 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 244.166-2 chr9 35471181 35471476 + 1.33333 NA intron (NR_003581, intron 13 of 17) intron (NR_003581, intron 13 of 17) -18783 NM_014806 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 307.333-11 chr9 26992476 26992930 + 1.33333 NA TTS (NM_022901) TTS (NM_022901) 12969 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 217.666 chr17 19816699 19817006 + 1.33333 NA exon (NM_001142610, exon 13 of 28) exon (NM_001142610, exon 13 of 28) 51084 NM_001142610 9706 Hs.168762 NM_014683 ENSG00000083290 ULK2 ATG1B|Unc51.2 unc-51 like autophagy activating kinase 2 protein-coding 241.5-18 chr3 83617917 83618264 + 1.33333 NA Intergenic Intergenic 1251485 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 240-5 chr11 12725411 12725633 + 1.33333 NA intron (NM_021961, intron 2 of 12) L1MA4A|LINE|L1 51101 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 137.833-33 chr5 13642024 13642144 + 1.33333 NA Intergenic Intergenic 302396 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 206.666-7 chr7 27649979 27650176 + 1.33333 NA intron (NM_152740, intron 1 of 7) intron (NM_152740, intron 1 of 7) 12806 NM_152740 11112 Hs.406758 NM_152740 ENSG00000106049 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 133.834-4 chr17 16640338 16640589 + 1.33333 NA intron (NM_020787, intron 3 of 5) L1MB7|LINE|L1 13387 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 264.666-7 chr22 40834369 40834600 + 1.33333 NA intron (NM_003932, intron 7 of 11) L1MC5a|LINE|L1 -15085 NR_104236 10478 Hs.474938 NM_006358 ENSG00000100372 SLC25A17 PMP34 solute carrier family 25 member 17 protein-coding 395.333 chr10 44529747 44530569 + 1.33333 NA Intergenic MSTB|LTR|ERVL-MaLR -145061 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 188-29 chr2 53051739 53051919 + 1.33333 NA Intergenic Intergenic -349214 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 159.833-35 chr4 11939653 11939849 + 1.33333 NA Intergenic L1ME1|LINE|L1 156573 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 380.333 chr1 113028299 113028875 + 1.33333 NA intron (NR_103777, intron 2 of 2) intron (NR_103777, intron 2 of 2) 44515 NR_103777 100996251 Hs.382067 NR_103777 ENSG00000238198 LRIG2-DT - LRIG2 divergent transcript ncRNA 521.166 chr17 61161256 61161803 + 1.33333 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 206175 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 305.666-2 chr12 76802805 76803329 + 1.33333 NA intron (NM_015336, intron 2 of 16) AluJb|SINE|Alu 38809 NM_001359626 23390 Hs.4014 NM_015336 ENSG00000186908 ZDHHC17 DHHC-17|HIP14|HIP3|HSPC294|HYPH zinc finger DHHC-type containing 17 protein-coding 388.166 chr6 151877180 151877581 + 1.33333 NA intron (NM_001291230, intron 3 of 8) intron (NM_001291230, intron 3 of 8) 68273 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 259-18 chr4 96760452 96760728 + 1.33333 NA intron (NR_147149, intron 3 of 3) L1MA4A|LINE|L1 449887 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 334.833-5 chr5 10144574 10145019 + 1.33333 NA Intergenic MSTC|LTR|ERVL-MaLR 105092 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 291-4 chr12 119468656 119469023 + 1.33333 NA intron (NM_178499, intron 2 of 13) AluJr|SINE|Alu -124935 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 385.999 chr4 109455937 109456295 + 1.33333 NA intron (NM_001300813, intron 2 of 24) L1MD|LINE|L1 -22299 NR_039978 100533182 Hs.518927 NR_039978 ENSG00000247950 SEC24B-AS1 1/2-SBSRNA4 SEC24B antisense RNA 1 ncRNA 230-16 chr2 220354606 220354818 + 1.33333 NA Intergenic Intergenic -448147 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 280.167-10 chr5 119926548 119927010 + 1.33333 NA Intergenic Intergenic 297220 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 288.333-11 chr5 149501817 149502069 + 1.33333 NA intron (NM_001271741, intron 9 of 9) intron (NM_001271741, intron 9 of 9) 48422 NM_001271742 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 212.667-28 chr3 78856115 78856435 + 1.33333 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 163184 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 175.5-59 chr8 86938701 86939026 + 1.33333 NA intron (NM_173538, intron 3 of 10) intron (NM_173538, intron 3 of 10) 72448 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 191.167-27 chr5 156095742 156096014 + 1.33333 NA Intergenic PABL_B-int|LTR|ERV1 -230879 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 182.667-60 chr8 78191106 78191347 + 1.33333 NA Intergenic Intergenic -325114 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 224.666-3 chr16 10700231 10700467 + 1.33333 NA Intergenic SATR2|Satellite|Satellite -5419 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 184-3 chr1 159040587 159040913 + 1.33333 NA intron (NM_005531, intron 7 of 10) intron (NM_005531, intron 7 of 10) 30843 NM_001206567 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 276-14 chr5 180963088 180963419 + 1.33333 NA Intergenic L1M3e|LINE|L1 -25593 NM_197975 10917 Hs.225949 NM_006707 ENSG00000168903 BTNL3 BTN9.1|BTNLR butyrophilin like 3 protein-coding 160.166-2 chr21 29568197 29568357 + 1.33333 NA intron (NM_000830, intron 14 of 16) intron (NM_000830, intron 14 of 16) -27763 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 193.667-46 chr7 40898719 40899021 + 1.33333 NA Intergenic Intergenic 81069 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 233.166-3 chr5 99136293 99136513 + 1.33333 NA Intergenic LTR80A|LTR|ERVL -206689 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 301.999-2 chr6 63710868 63711152 + 1.33333 NA intron (NM_001370350, intron 13 of 14) intron (NM_001370350, intron 13 of 14) 64484 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 194-11 chr12 10058160 10058312 + 1.33333 NA intron (NM_207345, intron 5 of 8) intron (NM_207345, intron 5 of 8) 27554 NM_207345 283420 Hs.531189 NM_207345 ENSG00000197992 CLEC9A CD370|DNGR-1|DNGR1|UNQ9341 C-type lectin domain containing 9A protein-coding 422.666-3 chr3 9017809 9018359 + 1.33333 NA intron (NM_014850, intron 14 of 21) L1MA4A|LINE|L1 -54612 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 260.666-3 chr14 67737691 67737940 + 1.33333 NA Intergenic FLAM_C|SINE|Alu 35929 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 170.333-22 chr13 84536895 84537044 + 1.33333 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) -246685 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 169.333-27 chr15 86907991 86908127 + 1.33333 NA intron (NM_152336, intron 23 of 24) MIRb|SINE|MIR -24821 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 205.333-57 chr7 66633082 66633295 + 1.33333 NA intron (NM_001167961, intron 1 of 4) intron (NM_001167961, intron 1 of 4) 4307 NM_153033 154881 Hs.546627 NM_153033 ENSG00000243335 KCTD7 CLN14|EPM3 potassium channel tetramerization domain containing 7 protein-coding 295.333-15 chr5 58917980 58918263 + 1.33333 NA Intergenic Intergenic 81777 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 313.667-13 chr4 179831076 179831457 + 1.33333 NA Intergenic ERVL-E-int|LTR|ERVL 1327883 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 315.166 chr4 62785690 62786051 + 1.33333 NA Intergenic Intergenic -624105 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 437.5-4 chr5 76856588 76857477 + 1.33333 NA intron (NM_130772, intron 1 of 4) AluSg|SINE|Alu 7018 NM_130772 170591 Hs.482563 NM_130772 ENSG00000171643 S100Z Gm625|S100-zeta S100 calcium binding protein Z protein-coding 258.833-11 chr2 136739768 136740085 + 1.33333 NA Intergenic Intergenic -25619 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 320.5 chr1 30939089 30939501 + 1.33333 NA intron (NM_001020658, intron 20 of 21) L1MEb|LINE|L1 -3519 NR_033295 692235 NR_033295 SNORD103B U103B small nucleolar RNA, C/D box 103B snoRNA 407.833-3 chr16 79212312 79212968 + 1.33333 NA TTS (NM_016373) TTS (NM_016373) 388097 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 210.501-3 chr3 180431572 180432104 + 1.33333 NA Intergenic Intergenic 17665 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 172.5-21 chr14 72380967 72381166 + 1.33333 NA intron (NM_001370288, intron 3 of 16) L1MA5A|LINE|L1 -135754 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 272.166-5 chr5 57566508 57566869 + 1.33333 NA Intergenic L1ME3G|LINE|L1 -3654 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 160.667-78 chr8 123450957 123451167 + 1.33333 NA Intergenic L2a|LINE|L2 34288 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 257.333-22 chr6 126031324 126031660 + 1.33333 NA intron (NM_001031712, intron 12 of 12) intron (NM_001031712, intron 12 of 12) 44952 NR_146804 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 228.333-5 chr11 47272973 47273303 + 1.33333 NA intron (NM_130476, intron 1 of 32) intron (NM_130476, intron 1 of 32) -1028 NR_120569 101928943 Hs.664956 NR_120568 ENSG00000256746 LOC101928943 - uncharacterized LOC101928943 ncRNA 236.666-4 chr20 14368444 14368735 + 1.33333 NA intron (NM_001351663, intron 3 of 17) L1MB5|LINE|L1 -30922 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 386.667-2 chr4 62989496 62989959 + 1.33333 NA Intergenic L1MC4a|LINE|L1 -827962 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 282.666-3 chr17 58884619 58884944 + 1.33333 NA intron (NM_014906, intron 1 of 6) MIR|SINE|MIR 128912 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 248-4 chr17 66366245 66366498 + 1.33333 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 50483 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 181.333-18 chr15 52970957 52971157 + 1.33333 NA Intergenic Intergenic -145308 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 159.333-45 chr20 60820108 60820283 + 1.33333 NA Intergenic Intergenic 255633 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 173.833-64 chr9 99223600 99223879 + 1.33333 NA intron (NM_006808, intron 2 of 3) intron (NM_006808, intron 2 of 3) 1457 NM_006808 10952 Hs.191887 NM_006808 ENSG00000106803 SEC61B - SEC61 translocon beta subunit protein-coding 366.999 chr15 47569983 47570391 + 1.33333 NA intron (NM_001198999, intron 3 of 19) intron (NM_001198999, intron 3 of 19) -147318 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 347-5 chr3 84142149 84142447 + 1.33333 NA Intergenic Intergenic 727277 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 256.667-19 chr3 88430861 88431105 + 1.33333 NA intron (NM_001368168, intron 2 of 2) HAL1ME|LINE|L1 92527 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 163-55 chr7 8284611 8284733 + 1.33333 NA intron (NR_125740, intron 3 of 5) (TTTG)n|Simple_repeat|Simple_repeat -22060 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 130.333-11 chr10 25568622 25568802 + 1.33333 NA intron (NM_020752, intron 6 of 10) intron (NM_020752, intron 6 of 10) -83000 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 157.5-54 chr5 113283249 113283407 + 1.33333 NA intron (NM_001085377, intron 3 of 18) L1M3|LINE|L1 11610 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 136-37 chr2 130886169 130886314 + 1.33333 NA intron (NM_001367493, intron 1 of 13) L1MEd|LINE|L1 49327 NM_001367493 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 238.333-10 chr12 41955685 41956244 + 1.33333 NA Intergenic L1ME2z|LINE|L1 188910 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 138.333-15 chr10 16506345 16506502 + 1.33333 NA intron (NM_030664, intron 5 of 5) MIRb|SINE|MIR 15456 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 145.333-51 chr3 123209370 123209568 + 1.33333 NA intron (NM_012430, intron 2 of 6) intron (NM_012430, intron 2 of 6) 7526 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 245-6 chr12 9209128 9209352 + 1.33333 NA promoter-TSS (NM_002864) promoter-TSS (NM_002864) -845 NM_002864 5858 Hs.707491 NM_002864 ENSG00000126838 PZP CPAMD6 PZP alpha-2-macroglobulin like protein-coding 188-17 chr11 82887827 82888033 + 1.33333 NA intron (NM_199418, intron 1 of 9) MER39|LTR|ERV1 12500 NM_005040 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 184.333-18 chr17 57922630 57922868 + 1.33333 NA intron (NM_001271875, intron 1 of 10) MIRb|SINE|MIR -19360 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 212.667-10 chr10 66907832 66908231 + 1.33333 NA intron (NR_111911, intron 4 of 6) MamGypsy2-I|LTR|Gypsy -18005 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 351.333-3 chr14 43746459 43747141 + 1.33333 NA Intergenic Intergenic 760483 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 156.667-58 chr2 206774498 206774706 + 1.33333 NA intron (NM_001136193, intron 7 of 11) intron (NM_001136193, intron 7 of 11) -8632 NR_036078 100423002 NR_036078 ENSG00000263468 MIR3130-2 MIR3130-4|mir-3130-2 microRNA 3130-2 ncRNA 183-45 chr4 145951733 145951897 + 1.33333 NA Intergenic Intergenic -12992 NM_001306215 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 188.667-68 chr9 104621613 104621871 + 1.33333 NA Intergenic Intergenic -3538 NM_001001956 286362 Hs.553682 NM_001001956 ENSG00000136839 OR13C9 OR37L|OR9-13 olfactory receptor family 13 subfamily C member 9 protein-coding 135.166 chr3 197148446 197148597 + 1.33333 NA intron (NM_001366216, intron 5 of 23) L1M4|LINE|L1 35351 NM_001366221 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 288.833-3 chr12 40415902 40416163 + 1.33333 NA intron (NM_173600, intron 9 of 173) intron (NM_173600, intron 9 of 173) 22638 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 318.666-3 chr14 65181954 65182416 + 1.33333 NA Intergenic L1M2|LINE|L1 40162 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 684.334 chr9 31246991 31247946 + 1.33333 NA Intergenic Intergenic 134022 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 266.333-16 chr6 152902234 152902768 + 1.33333 NA Intergenic Intergenic 80540 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 303.5-4 chr4 64243220 64243568 + 1.33333 NA Intergenic Intergenic 166056 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 226.833-13 chr20 3026140 3026609 + 1.33333 NA intron (NM_080841, intron 16 of 22) intron (NM_080841, intron 16 of 22) -17248 NM_178332 2797 Hs.129715 NM_001501 ENSG00000125787 GNRH2 GnRH-II|LH-RHII gonadotropin releasing hormone 2 protein-coding 199.333-39 chr7 158912305 158912552 + 1.33333 NA intron (NM_001350918, intron 14 of 26) intron (NM_001350918, intron 14 of 26) 55870 NM_001350916 55112 Hs.389945 NM_018051 ENSG00000126870 WDR60 FAP163|SRPS6|SRTD8 WD repeat domain 60 protein-coding 216-34 chr8 128434953 128435252 + 1.33333 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 129577 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 160.667-56 chr3 117486149 117486354 + 1.33333 NA Intergenic Tigger5b|DNA|TcMar-Tigger 204674 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 211.166 chr12 101572150 101572337 + 1.33333 NA Intergenic Intergenic -22688 NM_001254719 4604 Hs.654589 NM_002465 ENSG00000196091 MYBPC1 LCCS4|MYBPCC|MYBPCS myosin binding protein C, slow type protein-coding 279.333-5 chr2 3763734 3764024 + 1.33333 NA intron (NM_001287444, intron 6 of 10) L2c|LINE|L2 57037 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 185.666-5 chr21 21188594 21188776 + 1.33333 NA intron (NM_001352597, intron 1 of 10) intron (NM_001352597, intron 1 of 10) 41523 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 140.667-52 chr3 26325144 26325345 + 1.33333 NA Intergenic Intergenic -297562 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 205-23 chr22 29833841 29834022 + 1.33333 NA intron (NM_001369921, intron 2 of 21) FLAM_C|SINE|Alu 4343 NM_001369924 84164 Hs.731754 NM_032204 ENSG00000100325 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 223.5-29 chr7 20253716 20254108 + 1.33333 NA Intergenic L1MA9|LINE|L1 36335 NR_134568 100506098 Hs.59203 NR_134567 ENSG00000233834 LOC100506098 - uncharacterized LOC100506098 ncRNA 162.333-9 chr11 27691156 27691283 + 1.33333 NA intron (NR_033312, intron 8 of 8) intron (NR_033312, intron 8 of 8) 8448 NM_170734 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 157.333-27 chr17 34960219 34960406 + 1.33333 NA intron (NM_006584, intron 1 of 13) intron (NM_006584, intron 1 of 13) 1148 NM_006584 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 249.5-5 chr11 11080693 11081072 + 1.33333 NA Intergenic Intergenic 222665 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 277.333-8 chr2 166425758 166425980 + 1.33333 NA intron (NR_045628, intron 18 of 25) MLT1D|LTR|ERVL-MaLR -49882 NM_002977 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 200.166 chr6 40116962 40117164 + 1.33333 NA Intergenic Intergenic -182601 NM_001358531 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 172.5-25 chr16 74029116 74029299 + 1.33333 NA Intergenic Intergenic 186314 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 219.666-2 chr17 53625767 53626173 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -196957 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 442-4 chr17 60335484 60336057 + 1.33333 NA intron (NM_032582, intron 2 of 33) intron (NM_032582, intron 2 of 33) 56363 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 323.333-3 chr11 84532209 84532548 + 1.33333 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) 188564 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 286.166-2 chr2 190539847 190540095 + 1.33333 NA Intergenic L1MA4|LINE|L1 -5249 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 301.333-9 chr5 28461835 28462237 + 1.33333 NA Intergenic Intergenic -174371 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 323.333-15 chr7 84703223 84703532 + 1.33333 NA Intergenic Intergenic 170901 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 256.667-5 chr10 8633547 8633882 + 1.33333 NA Intergenic L1MB8|LINE|L1 -39323 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 234-20 chr2 54994436 54994695 + 1.33333 NA intron (NM_153828, intron 1 of 6) L1MB7|LINE|L1 15707 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 160.167-65 chrX 87847219 87847711 + 1.33333 NA Intergenic Intergenic 329663 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 318-10 chr8 136582679 136583187 + 1.33333 NA intron (NR_147196, intron 2 of 5) L1M4|LINE|L1 52135 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 227.666-2 chr2 52925527 52925754 + 1.33333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -223025 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 204.833-31 chr7 82371903 82372116 + 1.33333 NA intron (NM_000722, intron 1 of 38) intron (NM_000722, intron 1 of 38) 71768 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 206.666-8 chr9 112686670 112686992 + 1.33333 NA non-coding (NR_138056, exon 3 of 3) non-coding (NR_138056, exon 3 of 3) 31286 NM_001329587 58493 Hs.658575 NM_021218 ENSG00000148153 INIP C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 INTS3 and NABP interacting protein protein-coding 285.5-11 chr2 155429073 155429382 + 1.33333 NA Intergenic Intergenic 730532 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 228.333-21 chr4 46413080 46413392 + 1.33333 NA Intergenic Intergenic -23108 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 272.5-8 chr2 130933538 130933903 + 1.33333 NA intron (NM_001367493, intron 3 of 13) L1MB5|LINE|L1 96806 NM_001367493 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 214-29 chr3 60871121 60871314 + 1.33333 NA intron (NM_001320900, intron 4 of 9) intron (NM_001320900, intron 4 of 9) -253347 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 261.333-5 chr16 72816985 72817195 + 1.33333 NA intron (NM_001164766, intron 4 of 8) intron (NM_001164766, intron 4 of 8) -152120 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 445.833 chr5 167512056 167512509 + 1.33333 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -61377 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 177.5-61 chr5 35716553 35716799 + 1.33333 NA intron (NM_024867, intron 20 of 36) intron (NM_024867, intron 20 of 36) 98813 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 198.666-2 chr5 175221821 175222169 + 1.33333 NA Intergenic L1ME2z|LINE|L1 222187 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 200-59 chr6 63300791 63301008 + 1.33333 NA intron (NM_001143940, intron 1 of 4) MER57A-int|LTR|ERV1 19078 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 385.166 chr17 33736978 33737374 + 1.33333 NA intron (NM_001094, intron 1 of 9) L1ME3G|LINE|L1 -203416 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 236-23 chr5 24486040 24486398 + 1.33333 NA TTS (NM_001317224) TTS (NM_001317224) 158759 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 194.5-45 chrX 15520361 15520565 + 1.33333 NA intron (NM_203281, intron 6 of 18) L1MB7|LINE|L1 13155 NM_001721 660 Hs.495731 NM_001721 ENSG00000102010 BMX ETK|PSCTK2|PSCTK3 BMX non-receptor tyrosine kinase protein-coding 385-3 chr2 58253791 58254577 + 1.33333 NA Intergenic AluJo|SINE|Alu -12804 NM_018062 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 198.166-2 chr6 129652460 129652650 + 1.33333 NA intron (NM_033515, intron 1 of 14) intron (NM_033515, intron 1 of 14) 57622 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 294.666 chr13 36993962 36994232 + 1.33333 NA intron (NM_013338, intron 3 of 9) MIRb|SINE|MIR 5243 NM_013338 29880 Hs.507769 NM_013338 ENSG00000120697 ALG5 bA421P11.2 ALG5 dolichyl-phosphate beta-glucosyltransferase protein-coding 295.333-10 chr3 39915397 39915804 + 1.33333 NA intron (NM_001284424, intron 2 of 15) ERV24B_Prim-int|LTR|ERV1 105940 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 199.5-15 chr18 151653 151825 + 1.33333 NA Intergenic Intergenic -6818 NM_001037334 9097 Hs.464416 NM_005151 ENSG00000101557 USP14 TGT ubiquitin specific peptidase 14 protein-coding 172.333-8 chr10 22912625 22912800 + 1.33333 NA Intergenic Intergenic -15312 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 128-87 chr7 85077905 85078070 + 1.33333 NA intron (NM_152754, intron 3 of 16) L1ME4a|LINE|L1 43944 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 142.667-71 chr3 116433209 116433338 + 1.33333 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) 12214 NM_001318915 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 222-12 chr14 61983616 61983925 + 1.33333 NA intron (NM_001367657, intron 3 of 6) AluJr4|SINE|Alu 56075 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 143.166 chr10 41859849 41859984 + 1.33333 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 508129 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 173.833-28 chr2 62474295 62474445 + 1.33333 NA Intergenic Intergenic 31825 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 172.5-3 chr1 49679640 49679876 + 1.33333 NA intron (NR_136623, intron 2 of 12) L1MDa|LINE|L1 -207673 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 234.5-2 chr1 219058241 219058653 + 1.33333 NA intron (NR_031644, intron 6 of 6) L1MB1|LINE|L1 115341 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 319-4 chr13 82217969 82218452 + 1.33333 NA Intergenic Intergenic -991227 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 262.5-13 chr3 57513487 57513836 + 1.33333 NA intron (NM_198564, intron 4 of 11) L1MC4a|LINE|L1 30683 NM_198564 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein axonemal heavy chain 12 protein-coding 163.833-11 chr11 15103070 15103235 + 1.33333 NA Intergenic L3|LINE|CR1 -9272 NM_001031853 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 222.333-26 chr5 40056310 40056523 + 1.33333 NA Intergenic L4_A_Mam|LINE|RTE-X 4125 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 236.5-18 chr2 222326278 222326788 + 1.33333 NA intron (NR_136642, intron 1 of 3) intron (NR_136642, intron 1 of 3) 5872 NR_136641 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 255.167 chr1 112303018 112303345 + 1.33333 NA Intergenic Intergenic -93033 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 230-33 chr9 86792118 86792368 + 1.33333 NA Intergenic Intergenic 155263 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 251.999-2 chr8 82469174 82469461 + 1.33333 NA Intergenic Intergenic -442787 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 141.666 chr11 15520721 15520859 + 1.33333 NA Intergenic L1MA7|LINE|L1 -123095 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 352.334 chr3 87954310 87954603 + 1.33333 NA intron (NM_001322210, intron 2 of 2) HAL1ME|LINE|L1 -28120 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 195.666-2 chr12 1448368 1448536 + 1.33333 NA intron (NR_027948, intron 19 of 19) intron (NR_027948, intron 19 of 19) -52039 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 249.5-21 chr3 548524 548913 + 1.33333 NA Intergenic HAL1ME|LINE|L1 -43387 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 269.333-14 chr5 59485481 59485774 + 1.33333 NA intron (NM_001349242, intron 1 of 16) (ATATAA)n|Simple_repeat|Simple_repeat 100871 NM_001349242 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 174.667-52 chr5 99645075 99645510 + 1.33333 NA Intergenic Intergenic 111302 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 185.667-21 chr15 68843192 68843402 + 1.33333 NA Intergenic Intergenic -22402 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 224.166 chr1 115747223 115747525 + 1.33333 NA intron (NM_001232, intron 1 of 10) L1MD1|LINE|L1 21431 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 386.999 chr1 193687909 193688292 + 1.33333 NA Intergenic Intergenic 383355 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 210.333-41 chr8 82034259 82034457 + 1.33333 NA Intergenic L1MDb|LINE|L1 -192072 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 451.666 chr5 39128577 39129255 + 1.33333 NA intron (NM_001243093, intron 10 of 18) L1MA4A|LINE|L1 -54517 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 197.833-23 chr4 30471984 30472181 + 1.33333 NA Intergenic Intergenic -248287 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 210.667-38 chr3 127868890 127869087 + 1.33333 NA Intergenic L1ME2|LINE|L1 -45738 NM_001003794 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 301.833-6 chr6 104949480 104949915 + 1.33333 NA Intergenic Intergenic -7410 NM_001004317 389421 Hs.23616 NM_001004317 ENSG00000187772 LIN28B CSDD2 lin-28 homolog B protein-coding 302 chr1 53048807 53049303 + 1.33333 NA intron (NM_001193600, intron 14 of 14) intron (NM_001193600, intron 14 of 14) -12997 NM_001199081 127435 Hs.586141 NM_153703 ENSG00000174348 PODN PCAN|SLRR5A podocan protein-coding 124.333-73 chr4 150572631 150572767 + 1.33333 NA intron (NM_001367550, intron 40 of 56) intron (NM_001367550, intron 40 of 56) -6390 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 214.833-7 chr14 64635503 64635718 + 1.33333 NA Intergenic AluSx1|SINE|Alu -68814 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 197-26 chr2 184824924 184825242 + 1.33333 NA intron (NM_194250, intron 1 of 3) MLT1G3|LTR|ERVL-MaLR 226554 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 211.333-50 chr8 76414154 76414529 + 1.33333 NA intron (NR_105006, intron 1 of 5) intron (NR_105006, intron 1 of 5) 7687 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 156.5-14 chr10 63445630 63445803 + 1.33333 NA intron (NM_001322258, intron 1 of 24) L2a|LINE|L2 15141 NR_134312 105378330 Hs.602852 NR_134312 LOC105378330 - uncharacterized LOC105378330 ncRNA 217.5-30 chr22 28527235 28527516 + 1.33333 NA intron (NM_001145418, intron 2 of 22) LTR41B|LTR|ERVL 67506 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 287.833-2 chr14 60413785 60414448 + 1.33333 NA Intergenic L1MB3|LINE|L1 71947 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 131.333-75 chr4 59157540 59157690 + 1.33333 NA Intergenic Intergenic 144042 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 258.333-6 chr10 90167861 90168106 + 1.33333 NA Intergenic Intergenic -210610 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 240.666-4 chr4 159015622 159015997 + 1.33333 NA intron (NM_152543, intron 1 of 4) intron (NM_152543, intron 1 of 4) 19420 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 347.333-3 chr4 57613410 57613881 + 1.33333 NA Intergenic Intergenic 187773 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 279.166 chr21 19530027 19530282 + 1.33333 NA Intergenic Intergenic 369601 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 265.666-4 chr4 47434732 47435018 + 1.33333 NA Intergenic Intergenic 28827 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 169-15 chr14 57043888 57044194 + 1.33333 NA Intergenic Intergenic 224864 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 225.167-28 chr8 53824778 53825014 + 1.33333 NA intron (NM_213620, intron 4 of 13) L1MC5a|LINE|L1 18146 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 206.666-5 chr3 135570781 135570999 + 1.33333 NA Intergenic Intergenic -394838 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 315.167-2 chr1 197995144 197995726 + 1.33333 NA Intergenic Intergenic 78063 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 164-30 chr2 41344276 41344488 + 1.33333 NA Intergenic Intergenic -533173 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 328.667-3 chr12 11468333 11468715 + 1.33333 NA intron (NR_148969, intron 2 of 4) intron (NR_148969, intron 2 of 4) 18154 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 365.333-2 chr6 52993216 52993584 + 1.33333 NA intron (NM_001512, intron 2 of 6) L1MC5a|LINE|L1 1884 NM_001512 2941 Hs.485557 NM_001512 ENSG00000170899 GSTA4 GSTA4-4|GTA4 glutathione S-transferase alpha 4 protein-coding 190.5-19 chr15 27123139 27123309 + 1.33333 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 38095 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 305 chr14 65872542 65872867 + 1.33333 NA Intergenic Intergenic 401602 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 222.833-12 chr20 145751 145980 + 1.33333 NA TTS (NM_030931) TTS (NM_030931) 3275 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 162.833-27 chr20 56023821 56023980 + 1.33333 NA Intergenic AluSx|SINE|Alu -18381 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 269.666 chr12 1325324 1325809 + 1.33333 NA intron (NR_027948, intron 15 of 19) intron (NR_027948, intron 15 of 19) -174925 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 172.666-2 chr12 14853401 14853533 + 1.33333 NA Intergenic MIRb|SINE|MIR -9941 NM_021071 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DO/ART4|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 158.667-16 chr11 67339639 67339818 + 1.33333 NA intron (NR_024469, intron 2 of 3) L1MEf|LINE|L1 13818 NM_021173 57804 Hs.523829 NM_021173 ENSG00000175482 POLD4 POLDS|p12 DNA polymerase delta 4, accessory subunit protein-coding 222-31 chr5 123037667 123037971 + 1.33333 NA Intergenic Intergenic -1094 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 263.999-2 chr5 40670482 40670728 + 1.33333 NA Intergenic Intergenic -9310 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 201.667-47 chr8 61371352 61371611 + 1.33333 NA intron (NM_173519, intron 2 of 5) intron (NM_173519, intron 2 of 5) 83511 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 262-9 chr2 81365985 81366286 + 1.33333 NA Intergenic Intergenic 100811 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 178-22 chr17 42992948 42993220 + 1.33333 NA 3' UTR (NM_001321381, exon 6 of 6) 3' UTR (NM_001321381, exon 6 of 6) -5189 NM_001349921 6155 Hs.514196 NM_000988 ENSG00000131469 RPL27 DBA16|L27 ribosomal protein L27 protein-coding 225.333-24 chr5 139204488 139204760 + 1.33333 NA Intergenic Intergenic -6256 NM_022464 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 300.333-11 chr18 12269452 12269686 + 1.33333 NA intron (NM_001279, intron 3 of 4) Charlie1|DNA|hAT-Charlie 15208 NM_001279 1149 Hs.249129 NM_001279 ENSG00000176194 CIDEA CIDE-A cell death inducing DFFA like effector a protein-coding 296-2 chr1 239139164 239139463 + 1.33333 NA Intergenic Intergenic -247255 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 163.667-32 chr19 33671848 33672150 + 1.33333 NA intron (NM_001127895, intron 2 of 4) L1ME3E|LINE|L1 -12529 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 215.166-3 chr8 134030013 134030259 + 1.33333 NA Intergenic L2|LINE|L2 143640 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 222.667-25 chr3 98998416 98998788 + 1.33333 NA Intergenic THE1B|LTR|ERVL-MaLR -96907 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 213.5-13 chr2 19984045 19984399 + 1.33333 NA intron (NM_001006657, intron 2 of 27) intron (NM_001006657, intron 2 of 27) 5883 NM_001006657 57539 Hs.205427 NM_020779 ENSG00000118965 WDR35 CED2|IFT121|IFTA1|SRTD7 WD repeat domain 35 protein-coding 321.833-3 chr11 102168455 102168863 + 1.33333 NA intron (NM_001282097, intron 3 of 7) intron (NM_001282097, intron 3 of 7) 56211 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 243.666 chr1 113845925 113846210 + 1.33333 NA intron (NM_012411, intron 9 of 18) L1MDa|LINE|L1 -10568 NR_037864 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 224-25 chr20 32006837 32007144 + 1.33333 NA Intergenic L2c|LINE|L2 -3448 NM_080625 140706 Hs.382151 NM_080625 ENSG00000101331 CCM2L C20orf160|dJ310O13.5 CCM2 like scaffold protein protein-coding 157.5-11 chr12 8623146 8623330 + 1.33333 NA Intergenic Intergenic -10379 NM_001330343 57379 Hs.149342 NM_020661 ENSG00000111732 AICDA AID|ARP2|CDA2|HEL-S-284|HIGM2 activation induced cytidine deaminase protein-coding 182.833-58 chr8 100814465 100814804 + 1.33333 NA Intergenic Intergenic -92546 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 188.667-9 chr11 21237705 21237977 + 1.33333 NA intron (NM_201551, intron 14 of 18) L2|LINE|L2 568255 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 114.667-124 chr8 38744529 38744719 + 1.33333 NA intron (NM_001352787, intron 2 of 13) MARNA|DNA|TcMar-Mariner -12651 NM_001352796 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 148.333-88 chr6 114310311 114310445 + 1.33333 NA intron (NR_125845, intron 9 of 9) intron (NR_125845, intron 9 of 9) -247501 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 214.333-20 chr15 67588659 67588962 + 1.33333 NA intron (NM_001206804, intron 6 of 21) intron (NM_001206804, intron 6 of 21) 39716 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 429 chr12 74842842 74843478 + 1.33333 NA Intergenic Intergenic 305325 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 271.666 chr11 66958247 66958506 + 1.33333 NA promoter-TSS (NM_000920) promoter-TSS (NM_000920) 7 NM_000920 5091 Hs.89890 NM_000920 ENSG00000173599 PC PCB pyruvate carboxylase protein-coding 265.333-10 chr17 17022979 17023297 + 1.33333 NA Intergenic Intergenic -19319 NM_001364716 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 326-6 chr4 69564701 69565006 + 1.33333 NA Intergenic L1M1|LINE|L1 -38839 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 204-34 chr6 88212180 88212360 + 1.33333 NA Intergenic Intergenic -44921 NM_001370546 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 249.5-22 chr3 32892738 32893132 + 1.33333 NA 3' UTR (NM_001039111, exon 4 of 4) 3' UTR (NM_001039111, exon 4 of 4) -58709 NM_005508 1233 Hs.184926 NM_005508 ENSG00000183813 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 C-C motif chemokine receptor 4 protein-coding 330.999 chr14 66670800 66671197 + 1.33333 NA intron (NM_001024218, intron 1 of 21) Cheshire|DNA|hAT-Charlie 163591 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 239.666 chr14 87031225 87031470 + 1.33333 NA Intergenic Intergenic 125569 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 516.333 chr2 85122345 85123318 + 1.33333 NA Intergenic MLT1C|LTR|ERVL-MaLR -10561 NM_031283 83439 Hs.516297 NM_031283 ENSG00000152284 TCF7L1 TCF-3|TCF3 transcription factor 7 like 1 protein-coding 201.834-6 chr6 54150917 54151176 + 1.33333 NA intron (NM_001281746, intron 5 of 11) intron (NM_001281746, intron 5 of 11) 39603 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 329-8 chrX 87758393 87758786 + 1.33333 NA Intergenic L1PA16|LINE|L1 240787 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 191.833-8 chr15 92244039 92244266 + 1.33333 NA Intergenic Intergenic -149729 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 246-3 chr12 87262985 87263650 + 1.33333 NA Intergenic Intergenic -67422 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 216.5-9 chr16 25318459 25318818 + 1.33333 NA Intergenic L1M5|LINE|L1 -60793 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 175.166 chr5 81392303 81392674 + 1.33333 NA intron (NM_130767, intron 1 of 14) intron (NM_130767, intron 1 of 14) 1646 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 253.666-4 chr7 70483446 70483925 + 1.33333 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -648459 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 277.166-2 chr3 95494341 95494601 + 1.33333 NA Intergenic Intergenic 188722 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 317.333-3 chr10 65614630 65615095 + 1.33333 NA intron (NR_120647, intron 2 of 5) MLT1I|LTR|ERVL-MaLR 43437 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 300.833 chr10 24813350 24813749 + 1.33333 NA Intergenic MIR3|SINE|MIR -89662 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 209.333-33 chr3 170885328 170885578 + 1.33333 NA Intergenic (TATACA)n|Simple_repeat|Simple_repeat -15258 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 191.833 chr1 92922172 92922360 + 1.33333 NA intron (NM_001006605, intron 1 of 4) intron (NM_001006605, intron 1 of 4) 39196 NM_001006605 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 238-11 chr17 29485105 29485378 + 1.33333 NA intron (NM_025142, intron 8 of 17) intron (NM_025142, intron 8 of 17) 81796 NM_198147 116236 Hs.106510 NM_198147 ENSG00000168792 ABHD15 - abhydrolase domain containing 15 protein-coding 203.5-24 chr21 32848907 32849068 + 1.33333 NA Intergenic Intergenic -35284 NM_001162496 56245 Hs.517235 NM_019596 ENSG00000205929 C21orf62 B37|C21orf120|PRED81 chromosome 21 open reading frame 62 protein-coding 423.333-4 chr7 136683003 136683601 + 1.33333 NA Intergenic Intergenic -185350 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 309.5-5 chr4 52729769 52730343 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR 16807 NR_003016 677810 Hs.635034 NR_003016 ENSG00000212588 SNORA26 HBI-6 small nucleolar RNA, H/ACA box 26 snoRNA 210.333-25 chr4 30814267 30814474 + 1.33333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 94001 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 256-10 chr3 48711408 48711695 + 1.33333 NA intron (NM_016291, intron 1 of 5) intron (NM_016291, intron 1 of 5) 5670 NR_027438 51447 Hs.595983 NM_016291 ENSG00000068745 IP6K2 IHPK2|InsP6K2|PIUS inositol hexakisphosphate kinase 2 protein-coding 205.834-7 chr8 119431618 119431872 + 1.33333 NA Intergenic Intergenic 15299 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 268.333-13 chr5 19438046 19438435 + 1.33333 NA Intergenic Intergenic 448032 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 186-46 chr5 163603513 163603739 + 1.33333 NA Intergenic Intergenic 98007 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 129-64 chr4 54925289 54925499 + 1.33333 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 200201 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 216.666-2 chr8 140425872 140426380 + 1.33333 NA intron (NM_001321646, intron 4 of 21) intron (NM_001321646, intron 4 of 21) 31618 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 273.666-3 chr22 37731581 37731822 + 1.33333 NA intron (NM_001039141, intron 7 of 23) AluSz|SINE|Alu 14243 NR_160697 102724378 NR_160696 LOC102724378 - uncharacterized LOC102724378 ncRNA 209.333 chr1 55463065 55463323 + 1.33333 NA Intergenic Zaphod|DNA|hAT-Tip100 237553 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 188.667-41 chr5 2210337 2210567 + 1.33333 NA Intergenic Intergenic 101749 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 414-4 chr2 160175010 160175624 + 1.33333 NA intron (NM_001282390, intron 3 of 13) Tigger17a|DNA|TcMar-Tigger 24955 NM_001282390 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 216.333-42 chr6 53448337 53448660 + 1.33333 NA Intergenic MIRb|SINE|MIR 96603 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 426.666-3 chr3 4699681 4700225 + 1.33333 NA intron (NM_001168272, intron 34 of 60) intron (NM_001168272, intron 34 of 60) 51637 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 205.5-42 chr7 71885998 71886206 + 1.33333 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 451289 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 374.333-2 chr3 89425459 89425755 + 1.33333 NA intron (NM_005233, intron 11 of 16) intron (NM_005233, intron 11 of 16) 317986 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 385.333 chr2 137722253 137722684 + 1.33333 NA Intergenic L1MA2|LINE|L1 205464 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 124.333-8 chr10 19014719 19014899 + 1.33333 NA Intergenic MLT1C|LTR|ERVL-MaLR -33992 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 206-22 chr3 27980079 27980299 + 1.33333 NA Intergenic MIRc|SINE|MIR -146053 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 277.5-10 chr3 189639625 189639928 + 1.33333 NA intron (NM_003722, intron 1 of 13) intron (NM_003722, intron 1 of 13) 8387 NM_001114978 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 262.333-20 chr4 47599622 47599986 + 1.33333 NA intron (NM_006587, intron 21 of 21) intron (NM_006587, intron 21 of 21) -52865 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 222.833-9 chr2 171240887 171241115 + 1.33333 NA Intergenic L3|LINE|CR1 -9708 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 127.667-96 chr8 84914770 84915021 + 1.33333 NA intron (NM_001287244, intron 7 of 7) intron (NM_001287244, intron 7 of 7) -192343 NM_001349637 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 273.666 chr11 105133106 105133494 + 1.33333 NA Intergenic AluSc|SINE|Alu 6469 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 186-47 chr6 38113537 38113692 + 1.33333 NA intron (NM_021943, intron 4 of 5) intron (NM_021943, intron 4 of 5) 293887 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 244 chr1 85968291 85968643 + 1.33333 NA intron (NM_152890, intron 22 of 59) intron (NM_152890, intron 22 of 59) 188004 NM_001349955 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 411.5-2 chr14 42651632 42652022 + 1.33333 NA Intergenic Intergenic 1044971 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 217.333-20 chr22 25662381 25662687 + 1.33333 NA intron (NM_001362778, intron 3 of 19) intron (NM_001362778, intron 3 of 19) -79654 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 178.833-9 chr11 79551498 79551654 + 1.33333 NA Intergenic Intergenic -110546 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 185.333-38 chr3 7378103 7378326 + 1.33333 NA intron (NM_000844, intron 4 of 9) intron (NM_000844, intron 4 of 9) 157070 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 212.334-8 chr8 122135912 122136139 + 1.33333 NA Intergenic MIRb|SINE|MIR 432619 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 338.333-7 chr6 50710176 50710454 + 1.33333 NA Intergenic Intergenic -3229 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 328.667-6 chr2 78097244 78097699 + 1.33333 NA intron (NR_110287, intron 3 of 5) intron (NR_110287, intron 3 of 5) 8741 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 197.166-4 chr8 52551698 52551906 + 1.33333 NA intron (NM_207413, intron 1 of 4) intron (NM_207413, intron 1 of 4) 13628 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 227.5-13 chr16 17044735 17045089 + 1.33333 NA Intergenic L1MA9|LINE|L1 -89592 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 241.333-18 chr3 4786723 4787032 + 1.33333 NA intron (NM_001168272, intron 50 of 60) intron (NM_001168272, intron 50 of 60) -35287 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 330.999-2 chr2 137658519 137658839 + 1.33333 NA intron (NM_001316349, intron 24 of 27) intron (NM_001316349, intron 24 of 27) 269253 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 166.667-65 chr8 122588979 122589315 + 1.33333 NA Intergenic L2|LINE|L2 -20503 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 177.167-44 chr7 3078419 3078627 + 1.33333 NA Intergenic Intergenic -34656 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 163.667-19 chr13 94207281 94207493 + 1.33333 NA intron (NM_005708, intron 4 of 8) MIRb|SINE|MIR -19396 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 166.667-10 chr11 46464288 46464502 + 1.33333 NA intron (NM_001267782, intron 13 of 19) intron (NM_001267782, intron 13 of 19) -12506 NR_036117 100422827 NR_036117 ENSG00000265014 MIR3160-1 mir-3160-1 microRNA 3160-1 ncRNA 198.666-3 chr7 11591901 11592091 + 1.33333 NA intron (NM_015204, intron 3 of 26) intron (NM_015204, intron 3 of 26) 240202 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 202.833-9 chr14 86569261 86569530 + 1.33333 NA Intergenic L1PBa|LINE|L1 -336383 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 196.333-11 chr15 56872888 56873301 + 1.33333 NA Intergenic MLT1J|LTR|ERVL-MaLR -44996 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 372.833 chr22 28219758 28220215 + 1.33333 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -239883 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 199.333-17 chr16 83705094 83705315 + 1.33333 NA intron (NM_001220489, intron 9 of 12) intron (NM_001220489, intron 9 of 12) 98772 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 344.166 chr14 104219661 104220130 + 1.33333 NA Intergenic Intergenic -3689 NR_146612 145195 Hs.534297 NR_146611 ENSG00000258913 LINC02691 C14orf144 long intergenic non-protein coding RNA 2691 ncRNA 237.833 chr1 115207895 115208350 + 1.33333 NA Intergenic HAL1|LINE|L1 -74912 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 137.333-71 chr4 161041530 161041637 + 1.33333 NA Intergenic L1MA4|LINE|L1 -981150 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 234-25 chr21 29662584 29663004 + 1.33333 NA intron (NM_000830, intron 4 of 16) intron (NM_000830, intron 4 of 16) 66754 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 235.5-17 chr2 50303685 50303954 + 1.33333 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 43935 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 151.333-88 chr8 88860926 88861111 + 1.33333 NA Intergenic Intergenic -533535 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 202.333-4 chr10 57472706 57472998 + 1.33333 NA Intergenic Intergenic -168293 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 200.334-2 chr13 76732972 76733446 + 1.33333 NA Intergenic THE1B|LTR|ERVL-MaLR 153196 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 398.5 chr9 26984922 26985422 + 1.33333 NA intron (NM_001099224, intron 6 of 13) L1PREC2|LINE|L1 20500 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 340 chr14 49941066 49941390 + 1.33333 NA Intergenic Intergenic -25171 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 160.666 chr1 216376737 216376901 + 1.33333 NA intron (NM_206933, intron 3 of 71) intron (NM_206933, intron 3 of 71) 46577 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 173.333-14 chr12 1771324 1771480 + 1.33333 NA intron (NM_024551, intron 2 of 7).2 AluJr|SINE|Alu -48865 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 292.333-9 chr5 157241671 157242048 + 1.33333 NA intron (NM_005546, intron 11 of 16) intron (NM_005546, intron 11 of 16) -24264 NM_001291722 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 294-3 chr18 54387925 54388323 + 1.33333 NA Intergenic Intergenic 30207 NR_110234 162681 Hs.208701 NM_173529 ENSG00000166845 C18orf54 LAS2 chromosome 18 open reading frame 54 protein-coding 180-32 chr3 79223238 79223512 + 1.33333 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -188352 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 408.666 chr1 60060116 60060733 + 1.33333 NA intron (NM_152377, intron 2 of 11) intron (NM_152377, intron 2 of 11) 13346 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 246.667-30 chrX 138692308 138692608 + 1.33333 NA intron (NM_033642, intron 3 of 4) intron (NM_033642, intron 3 of 4) 19259 NM_004114 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 277.999-3 chr5 166122080 166122325 + 1.33333 NA Intergenic Intergenic 804168 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 184-61 chr8 79567770 79568031 + 1.33333 NA Intergenic MLT1H|LTR|ERVL-MaLR -43217 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 145.333-3 chr1 70872930 70873164 + 1.33333 NA intron (NR_028293, intron 2 of 4) MamGypLTR1a|LTR|Gypsy 166594 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 383.334 chr10 27863739 27864352 + 1.33333 NA intron (NM_001290021, intron 10 of 13) intron (NM_001290021, intron 10 of 13) 117826 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 263.833 chr1 37089978 37090413 + 1.33333 NA Intergenic MamRep605|LTR?|LTR? -55680 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 260.666-4 chr15 48947499 48947731 + 1.33333 NA intron (NM_203349, intron 1 of 11) intron (NM_203349, intron 1 of 11) 16304 NM_203349 399694 Hs.642615 NM_203349 ENSG00000185634 SHC4 RaLP|SHCD SHC adaptor protein 4 protein-coding 119.666-2 chr5 163952684 163952861 + 1.33333 NA Intergenic Intergenic 447153 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 132-23 chr14 36472699 36472891 + 1.33333 NA TTS (NR_138600) TTS (NR_138600) 40740 NR_161362 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 229.834-6 chr4 33336040 33336333 + 1.33333 NA Intergenic L1PB4|LINE|L1 703707 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 202.333-14 chr15 58145038 58145289 + 1.33333 NA intron (NM_020980, intron 1 of 5) intron (NM_020980, intron 1 of 5) 6782 NM_001320635 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 220.833-21 chr6 50119730 50120048 + 1.33333 NA Intergenic Intergenic -69960 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 167.333-23 chr14 25557697 25557857 + 1.33333 NA Intergenic Intergenic -507480 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 155.666-2 chr18 74713621 74713746 + 1.33333 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 82720 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 258.833-19 chr8 78066022 78066234 + 1.33333 NA Intergenic Intergenic -450212 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 340.666 chr3 185604001 185604560 + 1.33333 NA intron (NM_021627, intron 5 of 16) L1MD|LINE|L1 17985 NM_021627 59343 Hs.401388 NM_021627 ENSG00000163904 SENP2 AXAM2|SMT3IP2 SUMO specific peptidase 2 protein-coding 451.666-2 chr9 71187280 71187836 + 1.33333 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -65937 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 415.333 chr1 200022247 200022624 + 1.33333 NA Intergenic Intergenic -5275 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 313.166 chr7 53452918 53453412 + 1.33333 NA Intergenic Intergenic 358766 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 234.667-4 chr1 169086262 169086517 + 1.33333 NA intron (NR_104091, intron 1 of 4) intron (NR_104091, intron 1 of 4) 616 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 169.333 chr1 42926794 42926999 + 1.33333 NA 3' UTR (NM_006516, exon 10 of 10) 3' UTR (NM_006516, exon 10 of 10) 31972 NM_006516 6513 Hs.473721 NM_006516 ENSG00000117394 SLC2A1 CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN solute carrier family 2 member 1 protein-coding 274.667-9 chr4 138232251 138232590 + 1.33333 NA intron (NM_014331, intron 2 of 11) intron (NM_014331, intron 2 of 11) 9929 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 276.999 chr8 141024386 141024728 + 1.33333 NA Intergenic Intergenic -22478 NM_001352699 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 204.833-15 chr2 205553021 205553174 + 1.33333 NA intron (NM_205863, intron 20 of 21) intron (NM_205863, intron 20 of 21) -129403 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 143.833-31 chr4 88754257 88754468 + 1.33333 NA intron (NM_001015045, intron 8 of 17) intron (NM_001015045, intron 8 of 17) 44573 NR_002806 285512 Hs.744957 NR_002806 ENSG00000248019 FAM13A-AS1 FAM13A1OS|FAM13AOS|NCRNA00039 FAM13A antisense RNA 1 ncRNA 114.667-44 chr2 13944672 13944842 + 1.33333 NA Intergenic Intergenic 456201 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 327-5 chr4 146060842 146061267 + 1.33333 NA Intergenic Intergenic 60859 NR_038331 100505545 Hs.122199 NR_038331 ENSG00000248809 LINC01095 - long intergenic non-protein coding RNA 1095 ncRNA 179.666-2 chr8 53429165 53429318 + 1.33333 NA Intergenic Intergenic 94724 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 225-29 chr5 9515980 9516238 + 1.33333 NA intron (NR_109935, intron 2 of 2) L2b|LINE|L2 4776 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 163.333-89 chrX 66402668 66402802 + 1.33333 NA Intergenic L1PA12|LINE|L1 213295 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 186.833-12 chr14 81590743 81591005 + 1.33333 NA Intergenic MIRc|SINE|MIR 32187 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 172.833-14 chr14 75977380 75977643 + 1.33333 NA intron (NM_001329938, intron 1 of 4) MIR3|SINE|MIR 4484 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 238-33 chr9 130078302 130078521 + 1.33333 NA intron (NM_020960, intron 4 of 17) intron (NM_020960, intron 4 of 17) 24505 NM_020960 57720 Hs.512461 NM_020960 ENSG00000148358 GPR107 GCDRP|LUSTR1|bA138E2.2 G protein-coupled receptor 107 protein-coding 230.166 chr12 39612434 39612701 + 1.33333 NA intron (NM_005164, intron 2 of 9) intron (NM_005164, intron 2 of 9) 7236 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 302-22 chr9 104223611 104223989 + 1.33333 NA Intergenic MIR3|SINE|MIR -46429 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 178-61 chr7 120159064 120159286 + 1.33333 NA Intergenic L1MC3|LINE|L1 -114000 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 246-14 chr4 69733667 69733954 + 1.33333 NA intron (NM_014465, intron 5 of 7) intron (NM_014465, intron 5 of 7) 26810 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 201.333-20 chr19 52000237 52000503 + 1.33333 NA exon (NM_001321318, exon 5 of 6) exon (NM_001321318, exon 5 of 6) 7841 NM_001199324 284370 Hs.368355 NM_198480 ENSG00000197619 ZNF615 - zinc finger protein 615 protein-coding 222.167-26 chr4 32847225 32847778 + 1.33333 NA Intergenic L1M1|LINE|L1 496463 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 313.5-3 chr14 72388041 72388462 + 1.33333 NA intron (NM_001370288, intron 3 of 16) (AC)n|Simple_repeat|Simple_repeat -128569 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 280.666-3 chr2 119498611 119498879 + 1.33333 NA intron (NM_002980, intron 1 of 12) L1MDa|LINE|L1 22291 NR_147847 107105282 Hs.670673 NR_147846 ENSG00000231013 LOC107105282 - uncharacterized LOC107105282 ncRNA 352.999-3 chr4 166859577 166859895 + 1.33333 NA intron (NM_001040159, intron 6 of 10) intron (NM_001040159, intron 6 of 10) 374690 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 187.666-2 chr6 36551980 36552234 + 1.33333 NA Intergenic Intergenic -4628 NM_007271 11329 Hs.409578 NM_007271 ENSG00000112079 STK38 NDR|NDR1 serine/threonine kinase 38 protein-coding 277-8 chr2 56534090 56534431 + 1.33333 NA Intergenic LTR39|LTR|ERV1 -348490 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 326.833-2 chr4 146850124 146850573 + 1.33333 NA intron (NR_133922, intron 8 of 13) MIR|SINE|MIR 95516 NR_133922 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 359-2 chr14 66748129 66748547 + 1.33333 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 240931 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 319.333-9 chr8 119106427 119106800 + 1.33333 NA 3' UTR (NM_006438, exon 6 of 6) 3' UTR (NM_006438, exon 6 of 6) -37831 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 364.666-2 chr13 87926261 87926692 + 1.33333 NA Intergenic L1MB3|LINE|L1 -115956 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 279.333 chr1 178786006 178786359 + 1.33333 NA intron (NM_152663, intron 4 of 19) Tigger2a|DNA|TcMar-Tigger 60938 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 152.666-5 chr5 166850610 166850755 + 1.33333 NA Intergenic Intergenic 75688 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 176.333-42 chr3 83592035 83592193 + 1.33333 NA Intergenic Intergenic 1277461 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 200-16 chr14 24058979 24059258 + 1.33333 NA intron (NM_138360, intron 19 of 39).2 intron (NM_138360, intron 19 of 39).2 7109 NM_138360 90668 Hs.26135 NM_138360 ENSG00000186648 CARMIL3 C14orf121|LRRC16B|crml-1 capping protein regulator and myosin 1 linker 3 protein-coding 181.667-50 chr5 104242511 104242890 + 1.33333 NA Intergenic Intergenic -679911 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 180.666-3 chr3 54680598 54680830 + 1.33333 NA intron (NM_018398, intron 11 of 37) intron (NM_018398, intron 11 of 37) -40857 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 144.667-100 chr9 14172483 14172698 + 1.33333 NA intron (NM_001369477, intron 2 of 7) intron (NM_001369477, intron 2 of 7) 8212 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 498.999 chr5 166582459 166583098 + 1.33333 NA Intergenic MER41E|LTR|ERV1 343592 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 249-22 chr9 118948963 118949243 + 1.33333 NA Intergenic Intergenic 269432 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 129.666-2 chrX 69415776 69415930 + 1.33333 NA Intergenic L1ME3A|LINE|L1 -89382 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 290-2 chr10 64645590 64645966 + 1.33333 NA Intergenic Intergenic -179750 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 148.333-96 chr7 127287662 127287865 + 1.33333 NA Intergenic Intergenic -34822 NM_000845 2918 Hs.449625 NM_000845 ENSG00000179603 GRM8 GLUR8|GPRC1H|MGLUR8|mGlu8 glutamate metabotropic receptor 8 protein-coding 286.333 chr10 60520211 60520700 + 1.33333 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 52501 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 261.667-22 chr2 52898189 52898600 + 1.33333 NA Intergenic Intergenic -195779 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 231.166-2 chr8 100887951 100888235 + 1.33333 NA Intergenic Intergenic 62478 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 372.667 chr1 80907163 80907689 + 1.33333 NA Intergenic L3|LINE|CR1 266139 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 252.333-28 chrX 93708286 93708541 + 1.33333 NA intron (NM_173698, intron 3 of 3) L2b|LINE|L2 34207 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 145.167-19 chr12 55290488 55290728 + 1.33333 NA Intergenic Intergenic 4624 NM_001005493 283365 Hs.554555 NM_001005493 ENSG00000188324 OR6C6 - olfactory receptor family 6 subfamily C member 6 protein-coding 189.333-9 chr14 32846382 32846547 + 1.33333 NA Intergenic L4_C_Mam|LINE|RTE-X -92415 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 240-10 chr14 50707622 50707874 + 1.33333 NA Intergenic Charlie1a|DNA|hAT-Charlie -39442 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 425.834 chr10 13186733 13187260 + 1.33333 NA intron (NM_018518, intron 9 of 19) AluSx1|SINE|Alu 25438 NM_182751 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding 243.667-15 chr17 61103681 61103962 + 1.33333 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 263883 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 200.666-3 chr12 40842087 40842297 + 1.33333 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) 14254 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 254-11 chr2 146901382 146901647 + 1.33333 NA Intergenic Intergenic 314457 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 252.667-16 chr3 17833093 17833353 + 1.33333 NA Intergenic Intergenic 90279 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 300.666 chr10 63701981 63702283 + 1.33333 NA Intergenic Intergenic -180242 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 341-7 chr7 43040411 43040941 + 1.33333 NA Intergenic Intergenic -71971 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 184-47 chr5 42796878 42797047 + 1.33333 NA intron (NM_001134848, intron 7 of 8) LTR84a|LTR|ERVL 14930 NM_005410 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 131.667-107 chr5 154120219 154120429 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger -70409 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 211.166-3 chr20 11197897 11198100 + 1.33333 NA Intergenic Intergenic 75385 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 385.334-2 chr6 92141964 92142408 + 1.33333 NA Intergenic Intergenic -451758 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 167.667-89 chr8 113320053 113320320 + 1.33333 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) 56966 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 194-21 chr14 85711712 85711966 + 1.33333 NA Intergenic Intergenic 178490 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 279.166-3 chr5 108187183 108187479 + 1.33333 NA intron (NM_001163315, intron 5 of 8) intron (NM_001163315, intron 5 of 8) 194767 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 327.833-8 chr8 108301414 108301873 + 1.33333 NA Intergenic Intergenic -52926 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 246-6 chr14 54254357 54254658 + 1.33333 NA Intergenic Intergenic -142361 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 152.333-55 chr6 44439145 44439296 + 1.33333 NA intron (NM_001253, intron 14 of 15) L1MB8|LINE|L1 3579 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 216.5-34 chr9 9382148 9382365 + 1.33333 NA intron (NM_002839, intron 9 of 45) L1M3|LINE|L1 -417136 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 371.5-4 chr6 143411456 143411806 + 1.33333 NA Intergenic AluSz|SINE|Alu 31046 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 197.833-14 chr2 30549982 30550370 + 1.33333 NA intron (NM_182551, intron 4 of 6) L1MC3|LINE|L1 102930 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 283.5-5 chr14 68147382 68147848 + 1.33333 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 324023 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 159.833-15 chr11 25117679 25117800 + 1.33333 NA Intergenic Intergenic 620686 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 183.5-55 chr7 126087531 126087759 + 1.33333 NA Intergenic L1M4|LINE|L1 -823354 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 150.667-27 chr14 46763154 46763371 + 1.33333 NA Intergenic L1MB7|LINE|L1 -111481 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 316.499 chr11 3350877 3351137 + 1.33333 NA Intergenic Intergenic 28139 NM_007152 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 326.166-2 chr18 2209265 2209681 + 1.33333 NA Intergenic Intergenic 362032 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 229.333-12 chr14 65736999 65737249 + 1.33333 NA intron (NM_004480, intron 9 of 9) intron (NM_004480, intron 9 of 9) 266022 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 364.666 chr11 114859561 114860222 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR 181364 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 235.667-18 chr4 133706238 133706551 + 1.33333 NA Intergenic Intergenic 495395 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 182-8 chr10 91399302 91399542 + 1.33333 NA intron (NR_024467, intron 3 of 4) L1MA9|LINE|L1 -9813 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 246.167-32 chr8 138634025 138634433 + 1.33333 NA intron (NM_152888, intron 49 of 64) Tigger18a|DNA|TcMar-Tigger -136499 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 196-7 chr10 55261674 55261940 + 1.33333 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -337235 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 331.833-2 chr11 31070015 31070300 + 1.33333 NA intron (NM_001367979, intron 18 of 38) intron (NM_001367979, intron 18 of 38) -77471 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 329.166 chr1 84562468 84562766 + 1.33333 NA intron (NM_004388, intron 6 of 6) intron (NM_004388, intron 6 of 6) 11823 NM_004388 1486 Hs.513557 NM_004388 ENSG00000117151 CTBS CTB chitobiase protein-coding 296.167-3 chr2 64745068 64745305 + 1.33333 NA Intergenic Intergenic -91273 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 144.333-88 chr8 79961987 79962115 + 1.33333 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 68208 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 180.333-18 chr13 85726502 85726767 + 1.33333 NA Intergenic Intergenic 72785 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 253.666-2 chr11 8598068 8598368 + 1.33333 NA Intergenic Intergenic -3990 NM_001352389 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 272.167-3 chr10 53683631 53683966 + 1.33333 NA Intergenic L1MB1|LINE|L1 -802432 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 232.833-20 chr8 31973663 31973885 + 1.33333 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -51962 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 334.999-3 chr6 34966378 34966814 + 1.33333 NA intron (NM_015245, intron 1 of 23) intron (NM_015245, intron 1 of 23) 77341 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 250.666-2 chr12 116208403 116208800 + 1.33333 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) -59947 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 180.666-4 chr8 106561026 106561174 + 1.33333 NA intron (NM_018002, intron 3 of 15) L1PA7|LINE|L1 -96708 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 219.667-21 chr4 32111965 32112323 + 1.33333 NA intron (NR_125936, intron 1 of 2) AluSq|SINE|Alu -89722 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 193.833-9 chr11 76272196 76272658 + 1.33333 NA Intergenic AluJr|SINE|Alu -65925 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 213.667-30 chr4 129513319 129513562 + 1.33333 NA Intergenic Intergenic 258038 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 276.333-11 chr20 47693201 47693423 + 1.33333 NA intron (NM_198596, intron 4 of 20) intron (NM_198596, intron 4 of 20) 92752 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 137.666-3 chr4 42873740 42873858 + 1.33333 NA Intergenic Intergenic -19467 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 272.333-15 chr21 21112462 21112906 + 1.33333 NA intron (NM_001352595, intron 1 of 14) MamGypsy2-I|LTR|Gypsy -34478 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 128.333-55 chr19 31255799 31256015 + 1.33333 NA intron (NR_138036, intron 1 of 4) intron (NR_138036, intron 1 of 4) 88397 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 325.666-2 chr3 161259059 161259392 + 1.33333 NA Intergenic AluSx1|SINE|Alu 37935 NM_001320227 51068 Hs.598836 NM_015938 ENSG00000169251 NMD3 CGI-07 NMD3 ribosome export adaptor protein-coding 275-10 chr4 132313822 132314174 + 1.33333 NA Intergenic MLT2B3|LTR|ERVL -277091 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 247.667-19 chr5 145543388 145543737 + 1.33333 NA Intergenic Intergenic 291780 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 262.667-7 chr13 46696359 46696711 + 1.33333 NA intron (NM_001164213, intron 9 of 18) intron (NM_001164213, intron 9 of 18) 100626 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 266.334-2 chr2 68733005 68733267 + 1.33333 NA Intergenic L2|LINE|L2 -1675 NM_001364819 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 319.5-3 chr3 97657343 97657809 + 1.33333 NA intron (NM_001080448, intron 14 of 17) MIRc|SINE|MIR -106945 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 167.833-21 chr16 61281526 61281746 + 1.33333 NA Intergenic L1MB7|LINE|L1 -225870 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 178.333-39 chr4 106578013 106578332 + 1.33333 NA Intergenic MIRb|SINE|MIR 144548 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 284.333-7 chr5 156770008 156770508 + 1.33333 NA Intergenic Intergenic -80037 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 368.666-2 chr2 80791101 80791468 + 1.33333 NA Intergenic LTR16|LTR|ERVL 477905 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 221.833-20 chr5 45817917 45818139 + 1.33333 NA Intergenic L1MC3|LINE|L1 -121648 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 149-25 chr13 108855611 108855817 + 1.33333 NA intron (NM_015011, intron 11 of 34) intron (NM_015011, intron 11 of 34) 226103 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 302.666-3 chr19 39975540 39975931 + 1.33333 NA intron (NM_153001, intron 6 of 10) MIR|SINE|MIR 4570 NM_006503 5704 Hs.211594 NM_006503 ENSG00000013275 PSMC4 MIP224|RPT3|S6|TBP-7|TBP7 proteasome 26S subunit, ATPase 4 protein-coding 209.166-2 chr7 80884542 80884762 + 1.33333 NA intron (NM_006379, intron 2 of 17) intron (NM_006379, intron 2 of 17) 34399 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 170.333-7 chr1 187997546 187997879 + 1.33333 NA Intergenic L1ME3G|LINE|L1 554084 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 357.499 chr3 32287897 32288251 + 1.33333 NA intron (NM_001320308, intron 1 of 2) MIRb|SINE|MIR 49394 NM_178868 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 317.5-13 chr5 102727843 102728165 + 1.33333 NA Intergenic Intergenic -26779 NM_001319943 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 300.5-2 chr10 81458030 81458580 + 1.33333 NA Intergenic L1MA7|LINE|L1 -416889 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 243.333-23 chr9 107279283 107279770 + 1.33333 NA Intergenic AluSx4|SINE|Alu -3753 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 257.333-2 chr12 49318817 49319141 + 1.33333 NA intron (NR_120449, intron 2 of 7) SVA_E|Retroposon|SVA -4276 NM_005480 10024 Hs.524399 NM_005480 ENSG00000135451 TROAP TASTIN trophinin associated protein protein-coding 207.166-2 chrX 93421694 93421919 + 1.33333 NA Intergenic Intergenic 251772 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 294.5-9 chr3 192781930 192782288 + 1.33333 NA Intergenic Intergenic -54568 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 187.333-40 chr2 187091646 187091942 + 1.33333 NA Intergenic MamRep605|LTR?|LTR? -242624 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 150-56 chr3 182603609 182603819 + 1.33333 NA Intergenic Intergenic -96590 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 314.166 chr1 220161881 220162359 + 1.33333 NA intron (NM_012414, intron 28 of 34) intron (NM_012414, intron 28 of 34) 38499 NR_031705 100302234 NR_031705 ENSG00000281696 MIR664A MIR664|MIRN664|hsa-mir-664|hsa-mir-664a|mir-664a microRNA 664a ncRNA 168.167-4 chr1 242453404 242453631 + 1.33333 NA intron (NM_001320272, intron 2 of 10) intron (NM_001320272, intron 2 of 10) -4035 NM_001195811 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 175.333-58 chr6 149858853 149859120 + 1.33333 NA intron (NM_032832, intron 1 of 6) L1ME4c|LINE|L1 -4512 NR_045126 100652739 Hs.642734 NR_045126 ENSG00000223701 RAET1E-AS1 RAET1G-AS1 RAET1E antisense RNA 1 ncRNA 291.333-10 chr6 158476831 158477267 + 1.33333 NA intron (NM_020245, intron 6 of 13) intron (NM_020245, intron 6 of 13) -59387 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 172-32 chr18 3980586 3980832 + 1.33333 NA intron (NR_102696, intron 1 of 4) intron (NR_102696, intron 1 of 4) 18356 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 344.666-3 chr13 28418828 28419243 + 1.33333 NA intron (NM_002019, intron 10 of 29) intron (NM_002019, intron 10 of 29) 76093 NM_001160030 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 205.666-3 chr4 91517974 91518155 + 1.33333 NA intron (NM_001145065, intron 10 of 10) L1PA15|LINE|L1 759238 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 254.333-8 chr14 81521346 81521856 + 1.33333 NA intron (NM_005065, intron 3 of 20) Tigger3b|DNA|TcMar-Tigger 12252 NM_005065 6400 Hs.181300 NM_005065 ENSG00000071537 SEL1L Hrd3|PRO1063|SEL1-LIKE|SEL1L1 SEL1L adaptor subunit of ERAD E3 ubiquitin ligase protein-coding 147.166 chr13 69556739 69556903 + 1.33333 NA Intergenic MER61C|LTR|ERV1 334475 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 153.166 chr2 208695599 208695782 + 1.33333 NA intron (NR_136588, intron 3 of 5) intron (NR_136588, intron 3 of 5) 153048 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 265.5-3 chr14 50526722 50527045 + 1.33333 NA intron (NM_198794, intron 2 of 31) intron (NM_198794, intron 2 of 31) 5686 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 249.667-46 chr8 136948759 136949233 + 1.33333 NA Intergenic MLT2D|LTR|ERVL 418198 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 143.5-16 chr12 43931486 43931886 + 1.33333 NA intron (NM_001286213, intron 2 of 6) L1MEd|LINE|L1 95605 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 332-7 chr5 39123816 39124230 + 1.33333 NA intron (NM_001243093, intron 13 of 18) intron (NM_001243093, intron 13 of 18) -49624 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 222.166-5 chr8 49955652 49955895 + 1.33333 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) 44366 NM_001321776 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 176.333-30 chr16 62475953 62476106 + 1.33333 NA Intergenic L1PREC2|LINE|L1 -439591 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 278.666-6 chr7 112891423 112891698 + 1.33333 NA intron (NM_152556, intron 3 of 4) intron (NM_152556, intron 3 of 4) 48315 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 147.666 chr5 58647941 58648072 + 1.33333 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 64931 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 193.333-29 chr2 81687763 81687937 + 1.33333 NA Intergenic LTR45B|LTR|ERV1 -220904 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 266.167-20 chr7 107556463 107556909 + 1.33333 NA intron (NM_181733, intron 2 of 20) L2c|LINE|L2 -7271 NM_001270419 11062 Hs.97627 NM_181581 ENSG00000105865 DUS4L DUS4|PP35 dihydrouridine synthase 4 like protein-coding 180.333-31 chr2 40101515 40101790 + 1.33333 NA 3' UTR (NM_001112802, exon 8 of 8) 3' UTR (NM_001112802, exon 8 of 8) 184018 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 162.666-3 chr7 17243095 17243316 + 1.33333 NA Intergenic Intergenic -55447 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 174-6 chr1 213867544 213867708 + 1.33333 NA intron (NR_037850, intron 4 of 5) intron (NR_037850, intron 4 of 5) -57123 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 231.666 chr10 73297082 73297350 + 1.33333 NA intron (NM_001367801, intron 15 of 27) intron (NM_001367801, intron 15 of 27) 44475 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 139.333-75 chr5 67595584 67595765 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR 51115 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 156-89 chr8 118901850 118902011 + 1.33333 NA Intergenic UCON38|Unknown|Unknown 49955 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 185.333-51 chr5 150824735 150824980 + 1.33333 NA Intergenic L1MA7|LINE|L1 -21664 NM_001346557 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 547 chr22 25639363 25640535 + 1.33333 NA intron (NM_001362778, intron 2 of 19) L1ME2|LINE|L1 75274 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 201.666-3 chr21 29449691 29449943 + 1.33333 NA Intergenic Intergenic -46230 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 231.167-23 chr4 187778814 187779002 + 1.33333 NA Intergenic MER57A-int|LTR|ERV1 -106267 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 282.666 chr1 70876143 70876443 + 1.33333 NA intron (NR_028293, intron 2 of 4) L1PB4|LINE|L1 169840 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 150.666-2 chr2 127511376 127511527 + 1.33333 NA intron (NM_017969, intron 2 of 13) intron (NM_017969, intron 2 of 13) 15038 NM_017969 55677 Hs.469879 NM_017969 ENSG00000163166 IWS1 - interacts with SUPT6H, CTD assembly factor 1 protein-coding 251.5-26 chr8 127469712 127469981 + 1.33333 NA intron (NR_024393, intron 4 of 4) MIRc|SINE|MIR 12293 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 220.833-19 chr5 101118799 101119272 + 1.33333 NA Intergenic Intergenic -215753 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 162.166-2 chr9 19345754 19345974 + 1.33333 NA intron (NR_073201, intron 21 of 31) intron (NR_073201, intron 21 of 31) 34372 NM_001010 6194 Hs.408073 NM_001010 ENSG00000137154 RPS6 S6 ribosomal protein S6 protein-coding 148-25 chr13 26856469 26856614 + 1.33333 NA Intergenic Intergenic -95755 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 146.666-2 chr12 127342290 127342417 + 1.33333 NA Intergenic Intergenic -2281 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 238.666-3 chr2 14019729 14020020 + 1.33333 NA Intergenic Intergenic 381084 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 207-44 chr6 142922722 142922994 + 1.33333 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 22318 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 286.667 chr10 55128323 55128698 + 1.33333 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -327219 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 204.333-27 chr2 179778667 179778886 + 1.33333 NA intron (NR_148056, intron 1 of 9) L1ME4a|LINE|L1 -32266 NM_001352817 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 155.333-53 chr2 163296354 163296489 + 1.33333 NA Intergenic L1M5|LINE|L1 439587 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 119.333-106 chr8 20829807 20829954 + 1.33333 NA Intergenic L1ME1|LINE|L1 -123753 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 198-62 chr8 134064276 134064441 + 1.33333 NA Intergenic Charlie7|DNA|hAT-Charlie 177862 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 355-8 chr3 18480560 18481008 + 1.33333 NA intron (NR_125803, intron 4 of 6) intron (NR_125803, intron 4 of 6) -35192 NM_001322872 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 383.667-2 chr10 64448287 64448834 + 1.33333 NA Intergenic L1MEg|LINE|L1 -376968 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 140.333-89 chr8 118379136 118379400 + 1.33333 NA 3' UTR (NM_207506, exon 4 of 4) 3' UTR (NM_207506, exon 4 of 4) -241733 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 195.333-48 chr5 124845976 124846240 + 1.33333 NA Intergenic Intergenic -100996 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 312.666 chr1 106769331 106769802 + 1.33333 NA Intergenic Intergenic -48673 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 207-21 chr18 14021601 14021818 + 1.33333 NA Intergenic Intergenic -106002 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 215.166-2 chr7 48267663 48267974 + 1.33333 NA intron (NM_152701, intron 15 of 61) L1ME1|LINE|L1 96360 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 279.833-4 chr2 99260272 99260799 + 1.33333 NA Intergenic Intergenic -5428 NM_175735 254773 Hs.436468 NM_175735 ENSG00000185674 LYG2 LYGH|LYSG2 lysozyme g2 protein-coding 267.5-3 chr11 86370323 86370598 + 1.33333 NA Intergenic MSTB1|LTR|ERVL-MaLR -4276 NM_021827 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 151.333-20 chr11 75925345 75925460 + 1.33333 NA intron (NM_003369, intron 6 of 14) intron (NM_003369, intron 6 of 14) 110192 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 182.333-13 chr11 125738776 125738953 + 1.33333 NA Intergenic L1MA7|LINE|L1 -7415 NM_138294 160065 Hs.148565 NM_138294 ENSG00000171053 PATE1 PATE prostate and testis expressed 1 protein-coding 183.5-14 chr15 89285245 89285680 + 1.33333 NA intron (NM_001113378, intron 18 of 37) AluJo|SINE|Alu 41348 NR_106824 102466983 NR_106824 ENSG00000275101 MIR6766 hsa-mir-6766 microRNA 6766 ncRNA 332.167-2 chr11 106811966 106812608 + 1.33333 NA intron (NM_001256424, intron 4 of 8) intron (NM_001256424, intron 4 of 8) 206189 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 146-29 chr17 60355226 60355450 + 1.33333 NA intron (NM_032582, intron 1 of 33) L1ME2|LINE|L1 36795 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 195.833-3 chr10 21789624 21789831 + 1.33333 NA intron (NM_022365, intron 9 of 11) L1M2a|LINE|L1 214003 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 192.833-8 chr10 105403611 105403812 + 1.33333 NA Intergenic L1MC1|LINE|L1 416622 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 178.666-3 chr8 88411457 88411612 + 1.33333 NA Intergenic HERVL40-int|LTR|ERVL -84051 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 263.333-20 chr6 51821132 51821535 + 1.33333 NA intron (NM_138694, intron 52 of 66) MER81|DNA|hAT-Blackjack 199463 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 393-2 chr12 91996810 91997322 + 1.33333 NA intron (NR_132341, intron 1 of 4) L1MC5|LINE|L1 144647 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 414.834 chr4 66429828 66430454 + 1.33333 NA Intergenic Intergenic 153317 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 118.5-77 chr5 4422739 4422828 + 1.33333 NA Intergenic Intergenic -350698 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 265.333-11 chr17 72063124 72063459 + 1.33333 NA Intergenic Intergenic -5557 NR_110877 102723517 Hs.600042 NR_110877 ENSG00000234899 LOC102723517 - uncharacterized LOC102723517 ncRNA 141-75 chr5 113556276 113556430 + 1.33333 NA intron (NM_001345975, intron 16 of 28) L1ME4b|LINE|L1 42659 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 459.167 chr7 24872977 24873685 + 1.33333 NA intron (NR_104111, intron 1 of 21) intron (NR_104111, intron 1 of 21) 19290 NM_145322 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 386.166 chr10 33443860 33444316 + 1.33333 NA Intergenic Intergenic -109183 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 126-94 chr8 81666384 81666558 + 1.33333 NA intron (NM_001144879, intron 6 of 7) L1MC4|LINE|L1 19854 NM_005536 3612 Hs.656694 NM_005536 ENSG00000133731 IMPA1 IMP|IMPA|MRT59 inositol monophosphatase 1 protein-coding 269.333-7 chr14 52175150 52175408 + 1.33333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -92419 NM_000953 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 248-13 chr3 112644306 112644577 + 1.33333 NA Intergenic Intergenic -3298 NM_199512 151887 Hs.477128 NM_199511 ENSG00000091986 CCDC80 CL2|DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 389.167-2 chr19 51512223 51512575 + 1.33333 NA Intergenic L1M5|LINE|L1 -10599 NM_053003 89858 Hs.249741 NM_033329 ENSG00000254521 SIGLEC12 S2V|SIGLECL1|SLG|Siglec-XII sialic acid binding Ig like lectin 12 (gene/pseudogene) protein-coding 206.5-23 chr4 126614127 126614342 + 1.33333 NA Intergenic Intergenic -1018723 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 170-32 chr18 27267545 27267709 + 1.33333 NA Intergenic Intergenic 75029 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 122-81 chr7 15263318 15263477 + 1.33333 NA intron (NM_001004320, intron 12 of 12) L1PB1|LINE|L1 -288539 NM_001350722 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 261.333-27 chr7 107318516 107318791 + 1.33333 NA intron (NM_181733, intron 11 of 20) MLT1B|LTR|ERVL-MaLR 149650 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 185-26 chr2 154982321 154982614 + 1.33333 NA Intergenic Intergenic 283772 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 299-10 chr4 59819177 59819566 + 1.33333 NA Intergenic AluSc8|SINE|Alu 805798 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 116.333-58 chr3 16806798 16807003 + 1.33333 NA Intergenic Intergenic -78055 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 296.666-2 chr10 83350450 83350814 + 1.33333 NA Intergenic Intergenic 326457 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 337.167-4 chr2 16343837 16344350 + 1.33333 NA Intergenic L1MA4A|LINE|L1 293666 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 262-16 chr4 45964342 45964720 + 1.33333 NA Intergenic L1PA13|LINE|L1 159523 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 317.833-3 chr5 62455005 62455362 + 1.33333 NA intron (NM_016338, intron 5 of 29) intron (NM_016338, intron 5 of 29) 36299 NM_001134779 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 238.667-33 chr8 83857696 83857990 + 1.33333 NA Intergenic Intergenic -324944 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 124.666-2 chr5 153820402 153820507 + 1.33333 NA Intergenic Intergenic 78533 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 153.333-30 chr17 67236662 67236789 + 1.33333 NA intron (NM_001330447, intron 3 of 32) intron (NM_001330447, intron 3 of 32) -8051 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 337.667-2 chr12 39869872 39870286 + 1.33333 NA intron (NM_052885, intron 5 of 9) intron (NM_052885, intron 5 of 9) 236002 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 197.833-20 chr21 28539008 28539320 + 1.33333 NA promoter-TSS (NR_026553) promoter-TSS (NR_026553) -154 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 236.999 chr2 127158768 127158973 + 1.33333 NA Intergenic Charlie1|DNA|hAT-Charlie 46897 NM_001001665 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 313.666 chr5 27881716 27882173 + 1.33333 NA Intergenic L1MA3|LINE|L1 405721 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 133.333-121 chr8 116553872 116553981 + 1.33333 NA Intergenic Intergenic -98174 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 250.666-4 chr4 12207327 12207594 + 1.33333 NA Intergenic Intergenic -15991 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 348.333-2 chr2 54398005 54398355 + 1.33333 NA Intergenic Intergenic -58147 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 210.666-4 chr3 165741163 165741374 + 1.33333 NA Intergenic ERVL-int|LTR|ERVL 96155 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 373.666-3 chr7 38097320 38097740 + 1.33333 NA Intergenic Intergenic -80715 NM_001363347 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 217.833-6 chr14 59277573 59277903 + 1.33333 NA intron (NM_001270520, intron 2 of 24) intron (NM_001270520, intron 2 of 24) 14297 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 206.166 chr3 196040281 196040517 + 1.33333 NA Intergenic L1MB7|LINE|L1 41691 NM_001128148 7037 Hs.529618 NM_003234 ENSG00000072274 TFRC CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90 transferrin receptor protein-coding 356.666-3 chr7 129734405 129734856 + 1.33333 NA intron (NM_005011, intron 10 of 10) intron (NM_005011, intron 10 of 10) 35862 NR_029614 406958 NR_029614 ENSG00000207990 MIR182 MIRN182|miRNA182|mir-182 microRNA 182 ncRNA 180.666 chr1 88593588 88594006 + 1.33333 NA intron (NR_110682, intron 1 of 3) L1MA3|LINE|L1 -90347 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 262.167-22 chr5 163261297 163261505 + 1.33333 NA Intergenic Intergenic -176170 NM_001364023 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 178.167-18 chr17 58991511 58991829 + 1.33333 NA intron (NM_001005207, intron 24 of 24) L1MCa|LINE|L1 115210 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 189.833-16 chr2 41340514 41340806 + 1.33333 NA Intergenic MamRep137|DNA|TcMar-Tigger -536895 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 201.667-29 chr5 46263137 46263351 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr -566864 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 254.667-24 chr5 107711731 107712060 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -40958 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 224.666-7 chr3 27695597 27695874 + 1.33333 NA Intergenic L1ME1|LINE|L1 26588 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 217.333-7 chr11 85542759 85543068 + 1.33333 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 84357 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 232.5-32 chr6 137992109 137992413 + 1.33333 NA Intergenic L1ME2|LINE|L1 -46461 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 142.833-36 chr2 43750705 43750873 + 1.33333 NA intron (NM_172069, intron 24 of 29) intron (NM_172069, intron 24 of 29) -23250 NM_001348913 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 171.166-2 chr4 93789811 93789968 + 1.33333 NA Intergenic MER1B|DNA|hAT-Charlie -38864 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 210.666-6 chr5 138089561 138089784 + 1.33333 NA intron (NM_001300939, intron 4 of 4) intron (NM_001300939, intron 4 of 4) 5639 NM_001300938 7478 Hs.591274 NM_031933 ENSG00000061492 WNT8A WNT8D Wnt family member 8A protein-coding 246.666 chr10 24634508 24634750 + 1.33333 NA intron (NM_001367447, intron 5 of 24) intron (NM_001367447, intron 5 of 24) -11786 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 198.833-3 chr11 81027511 81027679 + 1.33333 NA Intergenic Intergenic -264792 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 172-17 chr12 83491983 83492131 + 1.33333 NA Intergenic Intergenic 804902 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 173-43 chr5 115382567 115382869 + 1.33333 NA Intergenic Helitron2Na_Mam|RC?|Helitron? -86064 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 531.5 chr1 207977018 207977706 + 1.33333 NA Intergenic L1MC4a|LINE|L1 -66237 NM_001025109 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 341.999 chr4 175067511 175067945 + 1.33333 NA Intergenic Intergenic 149370 NM_001130705 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 189.333-32 chr3 21694681 21694896 + 1.33333 NA intron (NM_024697, intron 1 of 7) MIRc|SINE|MIR 56422 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 270-9 chr3 117285619 117285886 + 1.33333 NA Intergenic Intergenic 364321 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 170-53 chr4 64721404 64721544 + 1.33333 NA Intergenic Intergenic 283026 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 234.667-6 chr1 233899783 233900193 + 1.33333 NA Intergenic L1MA9|LINE|L1 -4688 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 197.166-3 chr8 13744654 13744844 + 1.33333 NA Intergenic Intergenic 115059 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 316.999 chr2 159767491 159767812 + 1.33333 NA TTS (NM_001198763) TTS (NM_001198763) 30557 NM_014880 9936 Hs.130014 NM_014880 ENSG00000241399 CD302 BIMLEC|CLEC13A|DCL-1|DCL1 CD302 molecule protein-coding 267.166-2 chr11 111368259 111368577 + 1.33333 NA intron (NM_006235, intron 1 of 4) intron (NM_006235, intron 1 of 4) 10857 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 homeobox associating factor 1 protein-coding 192.667-30 chr20 11161204 11161379 + 1.33333 NA Intergenic Intergenic 112092 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 264.666 chr12 72030414 72030961 + 1.33333 NA intron (NM_173353, intron 9 of 10) intron (NM_173353, intron 9 of 10) 91842 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 327.333-3 chr11 80402957 80403401 + 1.33333 NA Intergenic Intergenic 359624 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 220.333-7 chr14 57167300 57167484 + 1.33333 NA Intergenic Zaphod|DNA|hAT-Tip100 101513 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 262.667-35 chr8 103683676 103684015 + 1.33333 NA intron (NM_001348488, intron 3 of 25) intron (NM_001348488, intron 3 of 25) -135375 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 342.834 chr6 134528707 134529119 + 1.33333 NA non-coding (NR_125855, exon 3 of 4) non-coding (NR_125855, exon 3 of 4) 11092 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 449.333-2 chr9 118090366 118090961 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR 386260 NM_138557 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 175.167-21 chr14 65083538 65083825 + 1.33333 NA TTS (NM_145114) TTS (NM_145114) -6237 NR_045122 100506321 Hs.711267 NR_045122 ENSG00000259118 LOC100506321 - uncharacterized LOC100506321 ncRNA 237-10 chr2 53904261 53904527 + 1.33333 NA intron (NM_014614, intron 26 of 46) intron (NM_014614, intron 26 of 46) -44361 NM_001164165 100302652 Hs.40763 NM_001164165 ENSG00000270898 GPR75-ASB3 ASB-3|ASB3 GPR75-ASB3 readthrough protein-coding 288-17 chr8 111966502 111967018 + 1.33333 NA Intergenic Intergenic 590121 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 272.667-7 chr3 12013877 12014257 + 1.33333 NA intron (NM_133625, intron 1 of 12) L2c|LINE|L2 9676 NM_133625 6854 Hs.445503 NM_003178 ENSG00000157152 SYN2 SYNII synapsin II protein-coding 269.333-15 chr6 72926102 72926450 + 1.33333 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 41477 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 340.333-2 chr10 56712938 56713419 + 1.33333 NA Intergenic Intergenic -351905 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 233.833-6 chr2 66240485 66240671 + 1.33333 NA Intergenic Intergenic 117750 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 270.334-3 chr12 9689641 9689985 + 1.33333 NA intron (NR_036693, intron 3 of 3) L1M4|LINE|L1 20100 NM_001197319 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 136-65 chr5 34855612 34855735 + 1.33333 NA intron (NM_001317949, intron 4 of 10) L1MC5a|LINE|L1 16292 NM_001317949 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 175.333-8 chr12 45807737 45807902 + 1.33333 NA intron (NM_152641, intron 3 of 20) intron (NM_152641, intron 3 of 20) 78110 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 159-20 chr14 53941803 53941975 + 1.33333 NA Intergenic L1MA2|LINE|L1 6595 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 260.666-6 chr4 66034690 66034948 + 1.33333 NA Intergenic Intergenic -242005 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 233.5-20 chr5 123957988 123958354 + 1.33333 NA Intergenic L1MC4|LINE|L1 412754 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 352.999 chr1 164151204 164151779 + 1.33333 NA Intergenic Intergenic -407869 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 186-18 chr16 76105290 76105520 + 1.33333 NA Intergenic Intergenic -171996 NM_001322179 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 148.666-4 chr2 195152411 195152560 + 1.33333 NA Intergenic Intergenic 421890 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 275.333-13 chr2 18189735 18190076 + 1.33333 NA Intergenic Intergenic 311238 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 162-63 chr6 106318506 106318653 + 1.33333 NA intron (NM_004849, intron 1 of 7) intron (NM_004849, intron 1 of 7) -2313 NR_104403 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 222.833-3 chr12 81290943 81291398 + 1.33333 NA intron (NM_001282536, intron 21 of 29) L1ME4a|LINE|L1 11981 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 428 chr6 13929921 13930389 + 1.33333 NA intron (NM_001165033, intron 1 of 1) MER2|DNA|TcMar-Tigger 4962 NM_001165033 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 240.667-16 chr17 68835407 68835728 + 1.33333 NA Intergenic L1MEh|LINE|L1 119825 NM_007168 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 117.333-74 chr3 107027183 107027284 + 1.33333 NA Intergenic L1PB3|LINE|L1 213405 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 195.333-23 chr2 117162486 117162743 + 1.33333 NA Intergenic Intergenic -652077 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 443.5 chr7 120285129 120285836 + 1.33333 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 12307 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 278-12 chr4 37488191 37488606 + 1.33333 NA intron (NM_001104629, intron 1 of 3) intron (NM_001104629, intron 1 of 3) 34473 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 235.333-13 chr2 10513349 10513672 + 1.33333 NA Intergenic Intergenic 63782 NR_110597 101929715 Hs.634550 NR_110597 ODC1-DT lncRNA-MIF ODC1 divergent transcript ncRNA 170-56 chr5 44229999 44230209 + 1.33333 NA Intergenic Intergenic -158628 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 330.166 chr13 65555887 65556268 + 1.33333 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -309970 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 228-17 chr2 18297574 18297820 + 1.33333 NA Intergenic Intergenic 262956 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 249.666 chr12 99125820 99126150 + 1.33333 NA intron (NM_152788, intron 15 of 25) intron (NM_152788, intron 15 of 25) 28781 NM_001352204 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 212-8 chr13 23225969 23226383 + 1.33333 NA intron (NM_000231, intron 2 of 7) L1M5|LINE|L1 45255 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 291.833-6 chr3 137238564 137238845 + 1.33333 NA Intergenic MLT1A|LTR|ERVL-MaLR 280721 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 143.666 chr12 12180558 12180735 + 1.33333 NA intron (NM_002336, intron 6 of 22).2 intron (NM_002336, intron 6 of 22).2 68694 NR_036262 100422885 NR_036262 ENSG00000283498 MIR1244-2 - microRNA 1244-2 ncRNA 398.332 chr5 130110854 130111195 + 1.33333 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 206559 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 473.499 chr5 36088474 36088913 + 1.33333 NA Intergenic L1MEd|LINE|L1 -21811 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 340-5 chr6 132988474 132988980 + 1.33333 NA Intergenic HSMAR2|DNA|TcMar-Mariner -99353 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 224.333-15 chr17 62588730 62589123 + 1.33333 NA intron (NM_001284363, intron 14 of 19) intron (NM_001284363, intron 14 of 19) -38744 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 308.999 chr6 118934007 118934248 + 1.33333 NA intron (NM_153255, intron 1 of 6) intron (NM_153255, intron 1 of 6) 1035 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 235.5-20 chr2 193703526 193703752 + 1.33333 NA Intergenic Intergenic -640630 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 326.5-7 chr4 14583575 14583918 + 1.33333 NA intron (NR_126435, intron 4 of 6) intron (NR_126435, intron 4 of 6) 304423 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 259.666-3 chr3 46300682 46300934 + 1.33333 NA Intergenic Intergenic -52936 NM_001123041 729230 Hs.511794 NM_001123041 ENSG00000121807 CCR2 CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R C-C motif chemokine receptor 2 protein-coding 319.333-6 chr15 62406944 62407287 + 1.33333 NA Intergenic Intergenic 64086 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 236.833-18 chr8 114160192 114160477 + 1.33333 NA Intergenic Intergenic -723395 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 265.166 chr1 192299249 192299490 + 1.33333 NA Intergenic Intergenic -17623 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 146.333-93 chr8 28074828 28075006 + 1.33333 NA intron (NM_001010906, intron 1 of 18) AluSx1|SINE|Alu 9019 NM_001010906 389643 Hs.370129 NM_001010906 ENSG00000189233 NUGGC C8orf80|HMFN0672|SLIP-GC nuclear GTPase, germinal center associated protein-coding 187.333-72 chr6 98996195 98996461 + 1.33333 NA Intergenic Intergenic -48322 NM_012160 26235 Hs.536850 NM_012160 ENSG00000112234 FBXL4 FBL4|FBL5|MTDPS13 F-box and leucine rich repeat protein 4 protein-coding 268.333-11 chr3 122395208 122395664 + 1.33333 NA intron (NM_014367, intron 1 of 4) L1MB7|LINE|L1 11254 NM_014367 26355 Hs.584881 NM_014367 ENSG00000114023 FAM162A C3orf28|E2IG5|HGTD-P family with sequence similarity 162 member A protein-coding 321.499 chr17 68970379 68970676 + 1.33333 NA Intergenic Intergenic -15135 NM_001288985 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 146.333-52 chr2 100505859 100506041 + 1.33333 NA Intergenic L1M4b|LINE|L1 35468 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 312.167-3 chr17 66162241 66162677 + 1.33333 NA intron (NM_001353129, intron 4 of 26) L1ME3|LINE|L1 29433 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 303.333-5 chr14 53386151 53386391 + 1.33333 NA Intergenic Intergenic 232917 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 377.166 chr9 76739104 76739625 + 1.33333 NA intron (NM_001308048, intron 6 of 17) intron (NM_001308048, intron 6 of 17) -25072 NR_132312 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 221-19 chr2 154364306 154364488 + 1.33333 NA intron (NM_052917, intron 9 of 12) intron (NM_052917, intron 9 of 12) 93041 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 248.834-8 chr3 183444359 183444773 + 1.33333 NA Intergenic L1ME4b|LINE|L1 -3042 NR_038302 100505687 Hs.551751 NR_038301 ENSG00000240024 LINC00888 - long intergenic non-protein coding RNA 888 ncRNA 336.666-5 chr3 83708901 83709253 + 1.33333 NA Intergenic Intergenic 1160498 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 264-12 chr3 179477995 179478275 + 1.33333 NA Intergenic MSTD|LTR|ERVL-MaLR -26665 NM_021629 59345 Hs.173030 NM_021629 ENSG00000114450 GNB4 CMTD1F G protein subunit beta 4 protein-coding 246.5-16 chr4 29004257 29004732 + 1.33333 NA intron (NR_146499, intron 1 of 2) intron (NR_146499, intron 1 of 2) 7710 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 143.333-5 chr10 23903189 23903462 + 1.33333 NA intron (NM_001098500, intron 1 of 18) MER39|LTR|ERV1 208598 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 210-6 chr14 32921225 32921499 + 1.33333 NA Intergenic MER5A|DNA|hAT-Charlie -17517 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 190.333-32 chr2 64126673 64126931 + 1.33333 NA intron (NM_020651, intron 1 of 6) intron (NM_020651, intron 1 of 6) 17618 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 214.667-11 chr11 106511140 106511546 + 1.33333 NA Intergenic Intergenic 259936 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 158-19 chr14 75634448 75634628 + 1.33333 NA intron (NM_017791, intron 4 of 9) intron (NM_017791, intron 4 of 9) 26338 NM_007176 11161 Hs.15106 NM_007176 ENSG00000133935 ERG28 C14orf1|NET51 ergosterol biosynthesis 28 homolog protein-coding 213.833-24 chr3 96235238 96235575 + 1.33333 NA Intergenic MIRc|SINE|MIR -124558 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 257.333-25 chr8 114326161 114326374 + 1.33333 NA Intergenic Tigger2|DNA|TcMar-Tigger -889328 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 251.333-5 chr10 117737432 117737715 + 1.33333 NA Intergenic Intergenic -192505 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 273.166-4 chr21 29164981 29165359 + 1.33333 NA intron (NM_001286620, intron 4 of 4) intron (NM_001286620, intron 4 of 4) 19593 NM_001286624 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 387.333 chr1 170176953 170177316 + 1.33333 NA intron (NR_146891, intron 1 of 4) L2a|LINE|L2 2755 NR_146891 105371609 Hs.508115 NR_146891 LINC01681 - long intergenic non-protein coding RNA 1681 ncRNA 397.666 chr1 244518566 244518892 + 1.33333 NA intron (NM_001130957, intron 8 of 21) A-rich|Low_complexity|Low_complexity 57358 NM_001242340 257044 Hs.459534 NM_173807 ENSG00000179397 CATSPERE C10orf101|C1orf101 catsper channel auxiliary subunit epsilon protein-coding 219.833-22 chr8 129305507 129305860 + 1.33333 NA Intergenic L1MB8|LINE|L1 -64443 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 147.5-54 chr20 50934157 50934506 + 1.33333 NA TTS (NM_001317034) TTS (NM_001317034) -2894 NM_001282531 23394 Hs.293736 NM_015339 ENSG00000101126 ADNP ADNP1|HVDAS|MRD28 activity dependent neuroprotector homeobox protein-coding 265-20 chr9 117262042 117262281 + 1.33333 NA intron (NM_014010, intron 2 of 21) intron (NM_014010, intron 2 of 21) -80960 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 164.333-5 chr1 219736027 219736217 + 1.33333 NA Intergenic Intergenic -122977 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 303.833-2 chr4 54060201 54060637 + 1.33333 NA intron (NM_012110, intron 1 of 5) intron (NM_012110, intron 1 of 5) 4186 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 207-35 chr3 149610672 149610857 + 1.33333 NA intron (NM_001348362, intron 5 of 9) intron (NM_001348362, intron 5 of 9) 47261 NM_001168280 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 296.5-10 chr8 78296872 78297267 + 1.33333 NA Intergenic L2c|LINE|L2 -219271 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 265.166-3 chr6 139938886 139939221 + 1.33333 NA Intergenic Intergenic -37266 NR_121623 100507477 Hs.179213 NR_121622 ENSG00000236013 LOC100507477 - uncharacterized LOC100507477 ncRNA 310.333-5 chr20 51942133 51942552 + 1.33333 NA Intergenic Intergenic -79429 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 243.666-2 chr14 20000950 20001161 + 1.33333 NA Intergenic Intergenic -1007 NM_001348271 390432 NM_001348271 ENSG00000196383 OR4Q2 OR4Q2P olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene) protein-coding 131.333-70 chr3 77111221 77111359 + 1.33333 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 13278 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 184.333-71 chr9 27849024 27849345 + 1.33333 NA Intergenic L3|LINE|CR1 -275318 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 354.167-7 chr8 81181804 81182313 + 1.33333 NA Intergenic Intergenic -69990 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 367.5-3 chr6 142362727 142363310 + 1.33333 NA intron (NM_198569, intron 2 of 24) intron (NM_198569, intron 2 of 24) 61011 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 411.666-2 chr5 41343484 41344166 + 1.33333 NA intron (NM_001005473, intron 2 of 2) intron (NM_001005473, intron 2 of 2) -82356 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 130-66 chr21 17830300 17830470 + 1.33333 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -11029 NM_001100421 54149 Hs.293811 NM_017447 ENSG00000154642 C21orf91 C21orf14|C21orf38|CSSG1|EURL|YG81 chromosome 21 open reading frame 91 protein-coding 128-12 chr10 60442424 60442799 + 1.33333 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -52736 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 188-50 chr5 133760799 133761015 + 1.33333 NA Intergenic Intergenic -148366 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 253.833-4 chr18 65108471 65108927 + 1.33333 NA Intergenic Intergenic -641553 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 192.333-32 chr3 62504399 62504780 + 1.33333 NA intron (NM_183393, intron 16 of 26) intron (NM_183393, intron 16 of 26) -131039 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 374-6 chr4 29706308 29706710 + 1.33333 NA Intergenic THE1D-int|LTR|ERVL-MaLR 492217 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 125.167-55 chr3 99528195 99528358 + 1.33333 NA Intergenic Intergenic -110318 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 263.333-3 chr10 53330674 53330936 + 1.33333 NA Intergenic Intergenic -559105 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 227.333-7 chr10 85193250 85193487 + 1.33333 NA TTS (NR_120668) TTS (NR_120668) 5537 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 272-5 chr17 59190361 59190859 + 1.33333 NA intron (NM_018304, intron 4 of 9) MLT1K|LTR|ERVL-MaLR -19400 NM_018149 55181 Hs.7296 NM_018149 ENSG00000167447 SMG8 C17orf71 SMG8 nonsense mediated mRNA decay factor protein-coding 258.666-2 chr3 75155943 75156223 + 1.33333 NA Intergenic Intergenic -58393 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 292.5-15 chr7 47059788 47060322 + 1.33333 NA Intergenic Intergenic -362933 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 297.666 chr10 105820205 105820538 + 1.33333 NA promoter-TSS (NR_120625) promoter-TSS (NR_120625) -38 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 195.667-22 chr2 40628593 40628852 + 1.33333 NA Intergenic Intergenic -116287 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 256-2 chr11 78070761 78071129 + 1.33333 NA intron (NM_001204055, intron 2 of 2) intron (NM_001204055, intron 2 of 2) 7084 NM_003251 7069 Hs.591969 NM_003251 ENSG00000151365 THRSP LPGP1|Lpgp|S14|SPOT14|THRP thyroid hormone responsive protein-coding 163.333-66 chr5 61595611 61595778 + 1.33333 NA Intergenic Intergenic -42066 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 304.333-5 chr18 74682060 74682323 + 1.33333 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 51228 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 256.167-10 chr2 161971959 161972362 + 1.33333 NA intron (NM_001354443, intron 23 of 25) intron (NM_001354443, intron 23 of 25) 102055 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 403.5-4 chr7 8271243 8271899 + 1.33333 NA intron (NR_125740, intron 3 of 5) L1MEc|LINE|L1 -8959 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 170-74 chr7 105727917 105728084 + 1.33333 NA intron (NM_020725, intron 3 of 11) L1ME3G|LINE|L1 -48838 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 348.666-4 chr2 113764096 113764619 + 1.33333 NA Intergenic MSTA-int|LTR|ERVL-MaLR -7715 NM_001330314 80255 Hs.355655 NM_025181 ENSG00000115084 SLC35F5 - solute carrier family 35 member F5 protein-coding 185.667-57 chr8 82549368 82549516 + 1.33333 NA Intergenic L1M6|LINE|L1 -362662 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 204.666-5 chr8 73119387 73119623 + 1.33333 NA Intergenic Intergenic -26333 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 157.5-65 chr8 34699174 34699411 + 1.33333 NA Intergenic L1MEc|LINE|L1 -84629 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 140.166 chr18 65909046 65909277 + 1.33333 NA Intergenic Intergenic 158149 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 166.5-38 chr3 188055522 188055706 + 1.33333 NA Intergenic MIRc|SINE|MIR -79207 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 194.333-44 chr8 137951501 137951741 + 1.33333 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 131924 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 300.999 chr6 49962389 49962640 + 1.33333 NA intron (NM_001037499, intron 1 of 1) L1ME3|LINE|L1 1650 NM_001037499 245928 Hs.381372 NM_001037499 ENSG00000177684 DEFB114 DEFB-14|DEFB14 defensin beta 114 protein-coding 504 chr18 31909588 31910100 + 1.33333 NA intron (NM_014939, intron 5 of 28) intron (NM_014939, intron 5 of 28) 33284 NM_014939 22878 Hs.202001 NM_014939 ENSG00000153339 TRAPPC8 GSG1|HsT2706|KIAA1012|TRS85 trafficking protein particle complex 8 protein-coding 164.334-2 chr11 81478791 81479061 + 1.33333 NA Intergenic Intergenic 411910 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 353.667-3 chr8 91422930 91423569 + 1.33333 NA Intergenic L2c|LINE|L2 173930 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 239.333-4 chr10 57485518 57485710 + 1.33333 NA Intergenic LTR16C|LTR|ERVL -181055 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 273.166-3 chr12 87794109 87794428 + 1.33333 NA intron (NR_149056, intron 2 of 3) intron (NR_149056, intron 2 of 3) -9557 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 156-94 chr8 134426812 134427013 + 1.33333 NA Intergenic Intergenic -171159 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 264.666-4 chr2 169509572 169509933 + 1.33333 NA promoter-TSS (NM_006063) promoter-TSS (NM_006063) 50 NM_006063 10324 Hs.50550 NM_006063 ENSG00000239474 KLHL41 KBTBD10|Krp1|SARCOSIN kelch like family member 41 protein-coding 251.5-16 chr4 180082649 180082970 + 1.33333 NA Intergenic Intergenic 1076340 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 141.333-99 chr8 142387085 142387226 + 1.33333 NA intron (NM_001366903, intron 1 of 9) L1M7|LINE|L1 16027 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 161.666 chr8 129869615 129869756 + 1.33333 NA intron (NM_001353307, intron 6 of 13) intron (NM_001353307, intron 6 of 13) 70126 NM_001353313 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 355-6 chr2 11037120 11037542 + 1.33333 NA Intergenic L1PB3|LINE|L1 94845 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 163.666-2 chr15 27107383 27107519 + 1.33333 NA intron (NM_001270873, intron 3 of 5) L1MC|LINE|L1 53868 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 266-24 chr8 138009154 138009702 + 1.33333 NA intron (NR_161374, intron 2 of 7) MIRb|SINE|MIR 74117 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 152.666-2 chr10 41875369 41875527 + 1.33333 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 492597 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 268.833-2 chr1 90692407 90692762 + 1.33333 NA Intergenic Intergenic 24718 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 184.167 chr1 10848738 10849074 + 1.33333 NA Intergenic AluSz|SINE|Alu -52260 NM_001079843 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 195-43 chr7 21560845 21561001 + 1.33333 NA intron (NM_001277115, intron 4 of 81) intron (NM_001277115, intron 4 of 81) 17884 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 345.333-3 chr2 196003818 196004335 + 1.33333 NA intron (NM_018897, intron 10 of 64) intron (NM_018897, intron 10 of 64) 64761 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 145.667-16 chr11 48096597 48096814 + 1.33333 NA promoter-TSS (NR_036119) promoter-TSS (NR_036119) -77 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 251.166 chr10 22338398 22339007 + 1.33333 NA Intergenic Intergenic -6743 NM_001253855 9576 Hs.655170 NM_012443 ENSG00000077327 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 184.667-11 chr11 82429840 82430036 + 1.33333 NA Intergenic L1MC1|LINE|L1 -26025 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 337-3 chr2 209192247 209192704 + 1.33333 NA Intergenic Intergenic -231572 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 203.5-40 chr7 92855880 92856088 + 1.33333 NA intron (NR_110087, intron 2 of 2) intron (NR_110087, intron 2 of 2) -19357 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 202.667-26 chr2 115188717 115189019 + 1.33333 NA intron (NM_001321906, intron 2 of 26) L1MC5|LINE|L1 26713 NM_001321909 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 202.667-50 chr8 144797433 144797713 + 1.33333 NA Intergenic MIR|SINE|MIR -1303 NM_001317936 340385 Hs.521942 NM_213605 ENSG00000197363 ZNF517 - zinc finger protein 517 protein-coding 251.5-9 chr19 36878300 36878603 + 1.33333 NA 3' UTR (NM_003419, exon 3 of 3) 3' UTR (NM_003419, exon 3 of 3) 26800 NM_001242475 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 179.333-28 chr2 82581658 82581800 + 1.33333 NA Intergenic L1M5|LINE|L1 -275074 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 464.166 chr9 36512547 36512973 + 1.33333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -60102 NM_001256691 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 179.333-4 chr1 245184614 245184812 + 1.33333 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) 29728 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 243.833-21 chr9 3431269 3431568 + 1.33333 NA intron (NM_001282116, intron 1 of 16) Tigger2|DNA|TcMar-Tigger -35822 NM_002919 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 173.333-28 chr18 78244440 78244685 + 1.33333 NA Intergenic Intergenic -250835 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 223.666-3 chr9 28508012 28508376 + 1.33333 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 211111 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 131-6 chr10 108071559 108071700 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -2336 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 205.333-62 chr8 105356565 105356934 + 1.33333 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 37206 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 162-74 chr8 135538702 135538966 + 1.33333 NA intron (NM_006558, intron 2 of 8) intron (NM_006558, intron 2 of 8) 81378 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 292.333-3 chr11 64993659 64994070 + 1.33333 NA intron (NM_138456, intron 2 of 2) AluJo|SINE|Alu 3107 NM_138456 116071 Hs.124840 NM_138456 ENSG00000168062 BATF2 SARI basic leucine zipper ATF-like transcription factor 2 protein-coding 148.166-2 chr17 67414626 67414767 + 1.33333 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) 37415 NM_012417 26207 Hs.591185 NM_012417 ENSG00000154217 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein cytoplasmic 1 protein-coding 313.501-3 chr11 57074825 57075262 + 1.33333 NA Intergenic MIRb|SINE|MIR 37509 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 262.333-9 chr14 51249627 51249923 + 1.33333 NA intron (NM_030755, intron 7 of 7) intron (NM_030755, intron 7 of 7) 9528 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 265.833-5 chr18 33016616 33017034 + 1.33333 NA intron (NM_001308126, intron 21 of 23) L1MB7|LINE|L1 -243802 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 299.5-4 chr15 63629318 63629771 + 1.33333 NA intron (NM_003922, intron 69 of 77) intron (NM_003922, intron 69 of 77) -28717 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 338-8 chr20 4832203 4832626 + 1.33333 NA Intergenic L1M7|LINE|L1 -8806 NM_014737 9770 Hs.631504 NM_014737 ENSG00000101265 RASSF2 CENP-34|RASFADIN Ras association domain family member 2 protein-coding 363.333-3 chr14 69965580 69966064 + 1.33333 NA intron (NM_001034852, intron 3 of 11) intron (NM_001034852, intron 3 of 11) -12311 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 232-30 chr7 106737937 106738421 + 1.33333 NA Intergenic L1M5|LINE|L1 -77021 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 168.667-29 chr2 20880970 20881153 + 1.33333 NA Intergenic Intergenic -57931 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 210.666-7 chr9 99790212 99790705 + 1.33333 NA intron (NR_109802, intron 2 of 6) L1M5|LINE|L1 29431 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 249-5 chr14 60491016 60491356 + 1.33333 NA Intergenic MLT1A1|LTR|ERVL-MaLR -5123 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 240-19 chr2 137789209 137789502 + 1.33333 NA Intergenic Intergenic 138577 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 288.999 chr1 74151931 74152218 + 1.33333 NA intron (NM_001105659, intron 4 of 7) HAL1M8|LINE|L1 46102 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 202-25 chr3 39939741 39939948 + 1.33333 NA intron (NM_001284424, intron 2 of 15) intron (NM_001284424, intron 2 of 15) 130184 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 175.166-2 chr8 50533777 50533988 + 1.33333 NA intron (NR_135797, intron 10 of 20) intron (NR_135797, intron 10 of 20) 369751 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 256.667-23 chr6 130646446 130646990 + 1.33333 NA Intergenic Intergenic -180687 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 195.333-57 chr8 48758374 48758698 + 1.33333 NA Intergenic Intergenic -23225 NM_001142857 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 593.5 chr3 71769807 71770627 + 1.33333 NA Intergenic Intergenic 14931 NM_001126128 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 146-44 chr20 52689866 52690045 + 1.33333 NA Intergenic L1MD|LINE|L1 69117 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 282.999 chr2 15636924 15637375 + 1.33333 NA Intergenic LTR85c|LTR|Gypsy? 45281 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 311.667-3 chr22 25157484 25157954 + 1.33333 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -42139 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 201.833-19 chr6 68948398 68948562 + 1.33333 NA intron (NM_001704, intron 6 of 31) intron (NM_001704, intron 6 of 31) 313198 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 264.5 chr1 179056544 179056982 + 1.33333 NA intron (NM_001324310, intron 4 of 7) L1MC1|LINE|L1 -25307 NM_022371 64222 Hs.584957 NM_022371 ENSG00000186283 TOR3A ADIR|ADIR2 torsin family 3 member A protein-coding 256.167-17 chr7 30760234 30760596 + 1.33333 NA intron (NR_037598, intron 2 of 19) L1MB3|LINE|L1 8280 NR_037598 100526825 Hs.660192 NR_037598 ENSG00000254959 INMT-MINDY4 INMT-FAM188B INMT-MINDY4 readthrough (NMD candidate) ncRNA 148-14 chr10 31604482 31604631 + 1.33333 NA Intergenic CR1-13_AMi|LINE|CR1 -204801 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 278.333-17 chrX 38412003 38412245 + 1.33333 NA intron (NM_000531, intron 9 of 9) intron (NM_000531, intron 9 of 9) 59520 NM_000531 5009 Hs.117050 NM_000531 ENSG00000036473 OTC OCTD ornithine carbamoyltransferase protein-coding 413 chr10 74884442 74885083 + 1.33333 NA intron (NM_001370144, intron 3 of 15) AluSz|SINE|Alu -28024 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 298-2 chr18 10389314 10389746 + 1.33333 NA Intergenic L1M5|LINE|L1 24840 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 245-9 chr14 55476799 55477090 + 1.33333 NA Intergenic Charlie25|DNA|hAT-Charlie -36399 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 235-18 chr2 53526758 53527211 + 1.33333 NA Intergenic HAL1|LINE|L1 -240799 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 329.5-3 chr10 107834526 107835171 + 1.33333 NA Intergenic L1MD3|LINE|L1 234445 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 261.333-4 chr14 38761541 38761901 + 1.33333 NA intron (NR_039982, intron 4 of 4) intron (NR_039982, intron 4 of 4) -120875 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 163.333-6 chr1 192770057 192770447 + 1.33333 NA Intergenic L1ME3Cz|LINE|L1 -38787 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G protein signaling 2 protein-coding 151-31 chr17 59200146 59200286 + 1.33333 NA intron (NM_018304, intron 9 of 9) intron (NM_018304, intron 9 of 9) -9794 NM_018149 55181 Hs.7296 NM_018149 ENSG00000167447 SMG8 C17orf71 SMG8 nonsense mediated mRNA decay factor protein-coding 142.333-95 chr8 55581823 55581964 + 1.33333 NA Intergenic Intergenic -60915 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 198-45 chr4 123386727 123386949 + 1.33333 NA Intergenic Kanga1a|DNA|TcMar-Tc2 -9957 NM_199327 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 368.333 chr1 95698134 95698551 + 1.33333 NA Intergenic MARNA|DNA|TcMar-Mariner 188226 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 282.666-6 chr7 16462080 16462346 + 1.33333 NA 3' UTR (NM_015464, exon 2 of 2) 3' UTR (NM_015464, exon 2 of 2) 3525 NM_015464 25928 Hs.648106 NM_015464 ENSG00000171243 SOSTDC1 CDA019|DAND7|ECTODIN|USAG1 sclerostin domain containing 1 protein-coding 158.666-3 chr2 105292225 105292391 + 1.33333 NA intron (NM_001142621, intron 4 of 11) L1M8|LINE|L1 37348 NR_137328 9392 Hs.446350 NM_004257 ENSG00000135966 TGFBRAP1 TRAP-1|TRAP1|VPS3 transforming growth factor beta receptor associated protein 1 protein-coding 292.333-12 chr8 82216788 82217046 + 1.33333 NA Intergenic Intergenic -374631 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 356.667-6 chr3 100564943 100565338 + 1.33333 NA intron (NM_001363876, intron 5 of 6) MIR|SINE|MIR -44461 NM_032787 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 242.666-6 chr7 119003354 119003643 + 1.33333 NA Intergenic L1M4|LINE|L1 778794 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 296-10 chr2 114691510 114691842 + 1.33333 NA intron (NM_001321908, intron 2 of 25) L1PA11|LINE|L1 141872 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 141.333-10 chr10 35729109 35729302 + 1.33333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -49097 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 278.333-4 chr11 113215109 113215462 + 1.33333 NA intron (NM_000615, intron 8 of 17) intron (NM_000615, intron 8 of 17) 58616 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 229.834-8 chr5 52417390 52417720 + 1.33333 NA Intergenic Intergenic -370361 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 141-86 chr8 80830022 80830128 + 1.33333 NA intron (NM_001033723, intron 1 of 8) intron (NM_001033723, intron 1 of 8) 44393 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 370.333-4 chr8 64866365 64866698 + 1.33333 NA Intergenic L1MA3|LINE|L1 -67794 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 337.333 chr1 60832190 60832589 + 1.33333 NA Intergenic UCON4|Unknown|Unknown -6805 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 291.5-10 chr2 37902090 37902507 + 1.33333 NA Intergenic Intergenic -22989 NM_001322212 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 287.666 chr13 60638771 60639012 + 1.33333 NA Intergenic Intergenic -34064 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 314.666-2 chr8 60393594 60393885 + 1.33333 NA Intergenic Intergenic 20079 NR_103854 100505532 Hs.720321 NR_103854 LINC01301 - long intergenic non-protein coding RNA 1301 ncRNA 330.5 chr1 233084771 233085038 + 1.33333 NA intron (NM_014801, intron 23 of 33) intron (NM_014801, intron 23 of 33) 134062 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 153.166-2 chr7 31975992 31976174 + 1.33333 NA intron (NM_001322059, intron 3 of 17) Tigger15a|DNA|TcMar-Tigger 94324 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 234.333-24 chr4 48178185 48178542 + 1.33333 NA intron (NM_003215, intron 2 of 17) intron (NM_003215, intron 2 of 17) -44113 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 426.666 chr10 60165768 60166227 + 1.33333 NA intron (NM_001204404, intron 23 of 43) intron (NM_001204404, intron 23 of 43) -24981 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 506.833 chr13 54256044 54256616 + 1.33333 NA Intergenic Intergenic 55718 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 264.5-2 chr10 64078196 64078577 + 1.33333 NA Intergenic Intergenic -556496 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 310.167-2 chr2 11969375 11969852 + 1.33333 NA Intergenic L1MA4A|LINE|L1 -37503 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 187.333-13 chr11 22679598 22679875 + 1.33333 NA intron (NM_005256, intron 1 of 6) intron (NM_005256, intron 1 of 6) 4962 NM_005256 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 GAS-2 growth arrest specific 2 protein-coding 168-13 chr12 64317129 64317285 + 1.33333 NA intron (NM_001170633, intron 4 of 12) intron (NM_001170633, intron 4 of 12) 73551 NM_001170633 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 172.666-3 chr17 61848545 61848736 + 1.33333 NA intron (NM_032043, intron 5 of 19) intron (NM_032043, intron 5 of 19) 14919 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 308.333-6 chr2 173886235 173886598 + 1.33333 NA Intergenic L1MC4a|LINE|L1 77464 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 265.333-19 chr7 40510620 40510853 + 1.33333 NA intron (NM_001193312, intron 11 of 12) L1MC4a|LINE|L1 375760 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 241.667-5 chr11 33636790 33637131 + 1.33333 NA intron (NM_012194, intron 16 of 20) L2a|LINE|L2 63780 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 225.333-19 chr20 47726470 47726785 + 1.33333 NA intron (NM_198596, intron 3 of 20) MER3|DNA|hAT-Charlie 59437 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 360.833-5 chr5 36176195 36176641 + 1.33333 NA intron (NM_032637, intron 7 of 9) intron (NM_032637, intron 7 of 9) 24307 NM_032637 6502 Hs.23348 NM_005983 ENSG00000145604 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase associated protein 2 protein-coding 489.332 chr2 77447118 77447518 + 1.33333 NA intron (NR_146416, intron 1 of 1) Tigger9b|DNA|TcMar-Tigger 75058 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 196.166 chr9 84214621 84214860 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR 126018 NR_037638 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 320.167-2 chr2 68771543 68772065 + 1.33333 NA intron (NM_001364821, intron 1 of 10) intron (NM_001364821, intron 1 of 10) -3106 NM_014882 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 188.334-2 chr1 236562256 236562820 + 1.33333 NA intron (NM_018072, intron 32 of 44) L1ME3C|LINE|L1 -38030 NR_034040 100287902 Hs.677376 NR_034040 ENSG00000223776 LGALS8-AS1 - LGALS8 antisense RNA 1 ncRNA 351.666 chr8 80572837 80573191 + 1.33333 NA Intergenic MLT1O|LTR|ERVL-MaLR 86788 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 210.833-15 chr2 65955980 65956154 + 1.33333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 402261 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 162-67 chr7 38648838 38649026 + 1.33333 NA Intergenic L1MB8|LINE|L1 -17365 NM_139316 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 155.333-100 chr9 28027140 28027337 + 1.33333 NA intron (NM_152570, intron 5 of 6) MIR|SINE|MIR -453372 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 172-11 chr12 7622437 7622588 + 1.33333 NA Intergenic L1ME1|LINE|L1 43396 NM_005889 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 205.667-28 chr18 66220045 66220376 + 1.33333 NA Intergenic MER39|LTR|ERV1 383880 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 199.167-26 chr3 146845207 146845450 + 1.33333 NA Intergenic Intergenic -76595 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 202-34 chr5 79368463 79368715 + 1.33333 NA Intergenic L2b|LINE|L2 132458 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 312.5-3 chr14 84464394 84464939 + 1.33333 NA Intergenic Intergenic -807266 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 162-41 chr21 19662125 19662357 + 1.33333 NA Intergenic L1M4|LINE|L1 237514 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 209-4 chr1 157648029 157648214 + 1.33333 NA Intergenic L1ME4c|LINE|L1 -50036 NM_031282 83417 Hs.120260 NM_031282 ENSG00000163518 FCRL4 CD307d|FCRH4|IGFP2|IRTA1 Fc receptor like 4 protein-coding 278.166 chr3 188631011 188631359 + 1.33333 NA intron (NM_005578, intron 6 of 10) L1PA15|LINE|L1 -57596 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 264.333-9 chr3 83119859 83120352 + 1.33333 NA Intergenic AluSx3|SINE|Alu 1133963 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 190.333-43 chr3 18593166 18593335 + 1.33333 NA Intergenic L2a|LINE|L2 -147658 NM_001322872 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 145.166 chr4 55976321 55976527 + 1.33333 NA intron (NM_025009, intron 11 of 25) intron (NM_025009, intron 11 of 25) 27479 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 230.833-24 chr8 25993911 25994160 + 1.33333 NA intron (NM_022659, intron 6 of 15) L1M6|LINE|L1 51378 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 250.666-5 chr5 108798118 108798363 + 1.33333 NA exon (NM_001308038, exon 4 of 8) exon (NM_001308038, exon 4 of 8) 49292 NR_146155 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 317.333-5 chr16 85743635 85743886 + 1.33333 NA intron (NR_161454, intron 1 of 3) AluSp|SINE|Alu -2060 NR_031731 100302261 NR_031731 ENSG00000283416 MIR1910 MIRN1910|hsa-mir-1910|mir-1910 microRNA 1910 ncRNA 145.167 chr1 61418568 61418705 + 1.33333 NA intron (NM_005595, intron 9 of 9) L1ME4a|LINE|L1 -165118 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 276.667-8 chr8 121895578 121895822 + 1.33333 NA Intergenic MER33|DNA|hAT-Charlie -254260 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 163-52 chr6 39735525 39735996 + 1.33333 NA Intergenic L1ME1|LINE|L1 -10337 NM_001351503 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 299.5-12 chr6 122688299 122688636 + 1.33333 NA intron (NM_181795, intron 3 of 4) L1MA2|LINE|L1 35738 NM_001270395 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 201.667-5 chr10 58171229 58171488 + 1.33333 NA Intergenic MLT1J|LTR|ERVL-MaLR 96536 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 150.334-7 chr6 65246620 65246917 + 1.33333 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -54650 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 150.667-34 chr14 73284584 73284790 + 1.33333 NA intron (NM_001005743, intron 9 of 12) intron (NM_001005743, intron 9 of 12) -38686 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 178-10 chr11 87812506 87812716 + 1.33333 NA Intergenic Intergenic -93200 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 372.167-2 chr3 7382799 7383319 + 1.33333 NA intron (NM_000844, intron 4 of 9) intron (NM_000844, intron 4 of 9) 152225 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 271.666-5 chr5 161657794 161658059 + 1.33333 NA Intergenic L1MC3|LINE|L1 -27795 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 344.666-5 chrX 80228242 80228513 + 1.33333 NA TTS (NR_110646) TTS (NR_110646) 106941 NR_110646 101060146 Hs.546064 NR_110646 ENSG00000278530 CHMP1B2P - charged multivesicular body protein 1B2, pseudogene pseudo 173-16 chr14 55889523 55889780 + 1.33333 NA Intergenic Intergenic -92977 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 199-29 chr6 34954395 34954588 + 1.33333 NA intron (NM_015245, intron 1 of 23) intron (NM_015245, intron 1 of 23) 65236 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 244-14 chr4 186826291 186826554 + 1.33333 NA Intergenic Intergenic -102566 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 270.666 chr14 67659150 67659376 + 1.33333 NA intron (NM_006370, intron 3 of 5) intron (NM_006370, intron 3 of 5) 15369 NM_006370 10490 Hs.741177 NM_006370 ENSG00000100568 VTI1B VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 vesicle transport through interaction with t-SNAREs 1B protein-coding 274-7 chr5 96540215 96540546 + 1.33333 NA intron (NR_130776, intron 4 of 4) L1MEc|LINE|L1 -107132 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 358.333-2 chr9 77082860 77083261 + 1.33333 NA Intergenic Intergenic 63405 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 214.666-2 chr11 44201520 44201741 + 1.33333 NA intron (NM_207122, intron 9 of 13) intron (NM_207122, intron 9 of 13) 105433 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 134-45 chr15 95375549 95375711 + 1.33333 NA Intergenic MIR|SINE|MIR -48530 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 287.166 chr14 28802655 28803108 + 1.33333 NA Intergenic L2a|LINE|L2 -17094 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 283.666 chr2 197859464 197859890 + 1.33333 NA intron (NM_006226, intron 1 of 5) Tigger3a|DNA|TcMar-Tigger 55084 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 175.333-20 chr16 61084399 61084625 + 1.33333 NA Intergenic Intergenic -28746 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 176.333-4 chr1 189748737 189748890 + 1.33333 NA Intergenic L1MC4|LINE|L1 727197 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 251-14 chr21 31196973 31197277 + 1.33333 NA intron (NM_001353686, intron 12 of 27) L1PA16|LINE|L1 -36185 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 270.333-6 chr3 95940457 95940795 + 1.33333 NA Intergenic L1MA3|LINE|L1 -257433 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 229-24 chr21 25077430 25077774 + 1.33333 NA Intergenic Intergenic 237052 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 360.999 chr6 135095640 135096086 + 1.33333 NA Intergenic Intergenic -41041 NM_001145207 10767 Hs.378532 NM_006620 ENSG00000112339 HBS1L EF-1a|ERFS|HBS1|HSPC276|eRF3c HBS1 like translational GTPase protein-coding 304.833-3 chr2 49287118 49287477 + 1.33333 NA Intergenic Intergenic -132770 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 151-16 chr13 34821245 34821659 + 1.33333 NA Intergenic Intergenic -120835 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 184.333-59 chr7 52727984 52728277 + 1.33333 NA Intergenic Intergenic -307503 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 178-56 chr7 52599116 52599377 + 1.33333 NA Intergenic Intergenic -436387 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 335.833-3 chr5 35661071 35661708 + 1.33333 NA intron (NM_144722, intron 8 of 9) (AT)n|Simple_repeat|Simple_repeat 43526 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 121-54 chr20 2604358 2604465 + 1.33333 NA intron (NM_080751, intron 11 of 19) intron (NM_080751, intron 11 of 19) -48221 NR_145428 10528 Hs.376064 NM_006392 ENSG00000101361 NOP56 NOL5A|SCA36 NOP56 ribonucleoprotein protein-coding 156.666 chr10 105326953 105327115 + 1.33333 NA Intergenic Intergenic 493299 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 184.333-20 chr18 3147238 3147512 + 1.33333 NA intron (NM_019856, intron 13 of 36) L1ME1|LINE|L1 72593 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 173.333 chr1 29062069 29062204 + 1.33333 NA intron (NM_004437, intron 14 of 18) intron (NM_004437, intron 14 of 18) 60365 NM_001171868 399474 Hs.712722 NM_001003682 ENSG00000253304 TMEM200B TTMB transmembrane protein 200B protein-coding 372-8 chr8 118489744 118490232 + 1.33333 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -131013 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 327-8 chr7 53558170 53558638 + 1.33333 NA Intergenic Intergenic 253527 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 286-8 chr3 80902476 80902783 + 1.33333 NA Intergenic Intergenic -91239 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 247-19 chrX 53600723 53601004 + 1.33333 NA intron (NM_031407, intron 28 of 83) intron (NM_031407, intron 28 of 83) -43589 NR_029484 406889 NR_029484 ENSG00000208012 MIRLET7F2 LET7F2|MIRNLET7F2|let-7f-2 microRNA let-7f-2 ncRNA 267.666-5 chr9 81842660 81842897 + 1.33333 NA Intergenic Intergenic -70659 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D member 5, pseudogene pseudo 192-21 chr2 22386551 22386748 + 1.33333 NA Intergenic Charlie24|DNA|hAT-Charlie -149830 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 169.667-4 chr1 245080257 245080551 + 1.33333 NA intron (NM_032328, intron 4 of 7) intron (NM_032328, intron 4 of 7) -74581 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 273.333-24 chr8 129493838 129494059 + 1.33333 NA intron (NR_130917, intron 1 of 3) L2b|LINE|L2 -9806 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 261.333-2 chr11 9964069 9964381 + 1.33333 NA intron (NM_030962, intron 14 of 39) AluJo|SINE|Alu 125083 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 325.833-5 chr3 14999934 15000248 + 1.33333 NA intron (NM_003298, intron 1 of 14) L1MA7|LINE|L1 -51650 NR_046251 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 342.667-7 chr6 150736299 150736883 + 1.33333 NA intron (NM_001329803, intron 2 of 13) AluSx|SINE|Alu 15492 NM_001329801 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 226.167-2 chr10 70845983 70846282 + 1.33333 NA intron (NM_003901, intron 3 of 14) intron (NM_003901, intron 3 of 14) 30184 NM_003901 8879 Hs.499984 NM_003901 ENSG00000166224 SGPL1 NPHS14|S1PL|SPL sphingosine-1-phosphate lyase 1 protein-coding 250.333-22 chr7 104380277 104380493 + 1.33333 NA intron (NM_199000, intron 1 of 2) L1M6|LINE|L1 51729 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 213.166 chr2 144167920 144168113 + 1.33333 NA intron (NM_001284234, intron 2 of 9) intron (NM_001284234, intron 2 of 9) 43563 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 537.167 chr10 13534230 13534892 + 1.33333 NA Intergenic AluSz6|SINE|Alu -5547 NM_001369863 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 151.5-58 chr5 12830290 12830533 + 1.33333 NA Intergenic Intergenic 162552 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 251.5-23 chr8 102325446 102325724 + 1.33333 NA intron (NM_001282873, intron 13 of 58) Charlie1a|DNA|hAT-Charlie 86134 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 215.333-13 chr14 73300385 73300607 + 1.33333 NA intron (NM_001005745, intron 5 of 10) intron (NM_001005745, intron 5 of 10) -54495 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 164.833-51 chr9 5342060 5342257 + 1.33333 NA Intergenic L1MA9|LINE|L1 -2282 NM_006911 6013 Hs.368996 NM_006911 ENSG00000107018 RLN1 H1|H1RLX|RLXH1|bA12D24.3.1|bA12D24.3.2 relaxin 1 protein-coding 247.333-31 chrX 101158794 101159102 + 1.33333 NA intron (NM_001318521, intron 20 of 20) L2|LINE|L2 57890 NM_001318523 2491 Hs.348920 NM_006733 ENSG00000102384 CENPI CENP-I|FSHPRH1|LRPR1 centromere protein I protein-coding 352.667-8 chr8 91380247 91380780 + 1.33333 NA intron (NM_134266, intron 15 of 18) Tigger4|DNA|TcMar-Tigger 131194 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 182-6 chr10 62218225 62218489 + 1.33333 NA intron (NM_145307, intron 7 of 11) intron (NM_145307, intron 7 of 11) 50487 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 343.499 chr3 72414878 72415251 + 1.33333 NA intron (NM_012234, intron 1 of 3) intron (NM_012234, intron 1 of 3) 31559 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 287.833-8 chr7 90444761 90445347 + 1.33333 NA Intergenic Intergenic -24585 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 209.333-32 chr3 140209344 140209550 + 1.33333 NA intron (NM_022131, intron 2 of 16) L1M6|LINE|L1 274262 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 284.666-3 chr12 38858029 38858442 + 1.33333 NA intron (NM_153634, intron 3 of 19) MER67C|LTR|ERV1 47356 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 308-9 chr8 105205200 105205604 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger -113036 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 300.666-3 chr12 42732159 42732441 + 1.33333 NA Intergenic Intergenic 40084 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 438.999 chr17 61704456 61704899 + 1.33333 NA intron (NM_032043, intron 17 of 19) L1MD2|LINE|L1 -113458 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 176.667-82 chr9 28490341 28490607 + 1.33333 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 228831 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 328-5 chr15 56427279 56427678 + 1.33333 NA intron (NM_198524, intron 10 of 12) intron (NM_198524, intron 10 of 12) 37659 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 230.667-5 chr12 8112661 8112963 + 1.33333 NA Intergenic L1MEd|LINE|L1 -10820 NM_194447 50856 Hs.504657 NM_016184 ENSG00000111729 CLEC4A CD367|CLECSF6|DCIR|DDB27|HDCGC13P|LLIR C-type lectin domain family 4 member A protein-coding 458.999 chr1 116144828 116145357 + 1.33333 NA Intergenic L1ME3D|LINE|L1 33337 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 313.333 chr1 14855859 14856263 + 1.33333 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -68068 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 182.666-2 chr13 107624193 107624390 + 1.33333 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -93043 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 421.833 chr6 120717643 120718057 + 1.33333 NA Intergenic L1M1|LINE|L1 616630 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 205.333-34 chr22 25839711 25840000 + 1.33333 NA intron (NM_001318245, intron 17 of 43) intron (NM_001318245, intron 17 of 43) 97667 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 162-69 chr8 81031920 81032185 + 1.33333 NA intron (NM_018440, intron 2 of 8) L1MB8|LINE|L1 80016 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 255.333-24 chr7 83689602 83689917 + 1.33333 NA Intergenic Intergenic -40620 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 230.333-5 chr16 63717997 63718187 + 1.33333 NA Intergenic L2|LINE|L2 1403971 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 239.166-2 chr8 137699573 137699863 + 1.33333 NA Intergenic Intergenic -286130 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 144.333-28 chr13 113525490 113525634 + 1.33333 NA intron (NR_146222, intron 8 of 11) Tigger3b|DNA|TcMar-Tigger 34541 NR_146221 55002 Hs.317593 NM_017905 ENSG00000150403 TMCO3 C13orf11 transmembrane and coiled-coil domains 3 protein-coding 269.334-8 chr8 78094994 78095453 + 1.33333 NA Intergenic Intergenic -421117 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 207-49 chr8 27716396 27716677 + 1.33333 NA Intergenic L1MC4|LINE|L1 -14769 NR_037418 100500871 NR_037418 ENSG00000265075 MIR3622B - microRNA 3622b ncRNA 399.666-2 chrX 57239554 57239948 + 1.33333 NA Intergenic L1MA6|LINE|L1 -46926 NM_001353840 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 218.333-19 chr2 103162579 103162882 + 1.33333 NA Intergenic Intergenic -178301 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 322.667 chr13 105695296 105695718 + 1.33333 NA Intergenic Tigger7|DNA|TcMar-Tigger -11323 NR_120418 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 233.667-22 chr5 153352407 153352751 + 1.33333 NA Intergenic Intergenic -137945 NM_001258019 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 182-50 chr7 3659968 3660144 + 1.33333 NA intron (NM_152744, intron 4 of 44) L2b|LINE|L2 358804 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 294.666-4 chr4 168190573 168190947 + 1.33333 NA Intergenic L1MA4A|LINE|L1 98223 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 214-41 chr6 41886284 41886491 + 1.33333 NA intron (NM_018561, intron 2 of 6) intron (NM_018561, intron 2 of 6) 8988 NM_018561 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 251.999-3 chr9 91988127 91988369 + 1.33333 NA Intergenic ERVL-B4-int|LTR|ERVL -38020 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 305.999-2 chr4 30422477 30422926 + 1.33333 NA Intergenic Intergenic -297668 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 149.667-63 chr5 6616885 6617013 + 1.33333 NA intron (NM_017755, intron 8 of 18) intron (NM_017755, intron 8 of 18) 16095 NR_037947 54888 Hs.481526 NM_017755 ENSG00000037474 NSUN2 MISU|MRT5|SAKI|TRM4 NOP2/Sun RNA methyltransferase 2 protein-coding 332.666-2 chr8 103729066 103729369 + 1.33333 NA intron (NM_001348496, intron 3 of 23) L1M3|LINE|L1 -90003 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 165.667-7 chr1 213769999 213770288 + 1.33333 NA Intergenic Intergenic -154606 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 217-13 chr2 48787065 48787346 + 1.33333 NA Intergenic MER39|LTR|ERV1 -31481 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 262.667-24 chr5 25424118 25424455 + 1.33333 NA Intergenic Intergenic 233333 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 231.166 chr12 122898055 122898412 + 1.33333 NA Intergenic Intergenic -2109 NM_024667 79720 Hs.507162 NM_024667 ENSG00000139722 VPS37B - VPS37B subunit of ESCRT-I protein-coding 220-18 chr4 33062730 33062982 + 1.33333 NA Intergenic Intergenic 711818 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 246.5-15 chr3 97401735 97401936 + 1.33333 NA intron (NM_001080448, intron 5 of 17) L1MA5|LINE|L1 -37772 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 139.5-14 chr12 20907694 20907877 + 1.33333 NA intron (NM_001371097, intron 13 of 15) AluSx1|SINE|Alu 85237 NM_001349920 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 334-5 chr2 114537234 114537583 + 1.33333 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 75831 NM_001321905 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 118-80 chr4 43792567 43792716 + 1.33333 NA Intergenic Intergenic -224220 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 322.666 chr16 47443926 47444310 + 1.33333 NA intron (NM_030790, intron 5 of 17) Charlie2a|DNA|hAT-Charlie 16945 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 224.666-11 chrX 74834183 74834480 + 1.33333 NA intron (NM_001008537, intron 1 of 3) L1MA2|LINE|L1 91121 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 246.833 chr1 11690260 11690520 + 1.33333 NA intron (NM_001127325, intron 1 of 8) intron (NM_001127325, intron 1 of 8) 1231 NM_001127325 10459 Hs.19400 NM_006341 ENSG00000116670 MAD2L2 FANCV|MAD2B|POLZ2|REV7 mitotic arrest deficient 2 like 2 protein-coding 375.833-2 chr16 56331217 56331611 + 1.33333 NA intron (NM_138736, intron 4 of 7) L2a|LINE|L2 85894 NR_037499 100500891 NR_037499 ENSG00000265281 MIR3935 - microRNA 3935 ncRNA 172-39 chr20 9299487 9300028 + 1.33333 NA intron (NM_182797, intron 1 of 35) L1ME4a|LINE|L1 -8043 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 306-11 chr21 18863651 18864117 + 1.33333 NA Intergenic Intergenic -104072 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 170.333-12 chr10 83107565 83107886 + 1.33333 NA Intergenic Intergenic 569364 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 386.332 chr18 6606125 6606445 + 1.33333 NA Intergenic Intergenic 94869 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 185.333-54 chr6 27494358 27494595 + 1.33333 NA Intergenic Intergenic -21358 NM_001318891 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 318.166-2 chr8 53038049 53038650 + 1.33333 NA Intergenic L1MC3|LINE|L1 98441 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 265.666-5 chr8 85843784 85844117 + 1.33333 NA Intergenic Intergenic -16008 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 241.667-30 chr5 31157845 31158291 + 1.33333 NA Intergenic Intergenic -35618 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 234-29 chr4 165559169 165559468 + 1.33333 NA Intergenic L1ME3D|LINE|L1 -125321 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 348.666-3 chr15 101255095 101255515 + 1.33333 NA Intergenic Intergenic -3257 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 242.667-16 chr2 40967557 40967946 + 1.33333 NA Intergenic Intergenic -455316 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 262.666-3 chr4 56120049 56120325 + 1.33333 NA Intergenic Intergenic -50008 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 206.5-4 chr1 227871352 227871520 + 1.33333 NA Intergenic L1ME3B|LINE|L1 55719 NM_183062 339501 Hs.97604 NM_183062 ENSG00000185888 PRSS38 MPN2 serine protease 38 protein-coding 241.666-3 chr16 62310620 62311004 + 1.33333 NA Intergenic Intergenic -274374 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 185.5-32 chr4 67556036 67556276 + 1.33333 NA Intergenic Intergenic -2571 NM_012108 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 260.666-7 chr7 84355075 84355299 + 1.33333 NA Intergenic Intergenic -160398 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 177.333-35 chr2 49855138 49855301 + 1.33333 NA Intergenic Intergenic 118984 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 172.667-4 chr1 152235652 152235883 + 1.33333 NA Intergenic L1MA4|LINE|L1 -11571 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 190.833-10 chr13 51887707 51887900 + 1.33333 NA Intergenic Intergenic 25834 NM_031290 83446 Hs.120573 NM_031290 ENSG00000123171 CCDC70 - coiled-coil domain containing 70 protein-coding 227.334-12 chr5 13243031 13243454 + 1.33333 NA Intergenic MIR|SINE|MIR -210356 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 255.333-5 chr12 64256193 64256655 + 1.33333 NA Intergenic Tigger16b|DNA|TcMar-Tigger -34128 NM_152440 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 183.666-2 chr4 85382654 85382792 + 1.33333 NA Intergenic Charlie7|DNA|hAT-Charlie -92427 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 155.333-17 chr11 31304568 31304718 + 1.33333 NA intron (NM_181807, intron 6 of 8) intron (NM_181807, intron 6 of 8) 65096 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 125.333-76 chr3 18094541 18094713 + 1.33333 NA intron (NR_161333, intron 4 of 4) HAL1|LINE|L1 132075 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 124.833-84 chr7 101450970 101451073 + 1.33333 NA intron (NM_133457, intron 3 of 12) L1ME4a|LINE|L1 88146 NM_001278563 136227 Hs.654854 NM_133457 ENSG00000160963 COL26A1 EMI6|EMID2|EMU2|SH2B collagen type XXVI alpha 1 chain protein-coding 303.334-4 chr17 70554835 70555590 + 1.33333 NA Intergenic Intergenic 385677 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 296.333-13 chr7 52670397 52670809 + 1.33333 NA Intergenic Intergenic -365030 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 181.666-3 chr13 78113118 78113285 + 1.33333 NA intron (NR_047001, intron 1 of 5) L1MA3|LINE|L1 58346 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 249-7 chr17 40590984 40591329 + 1.33333 NA Intergenic MER57B1|LTR|ERV1 -25684 NM_001838 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 121.333-124 chrX 104740417 104740602 + 1.33333 NA intron (NM_017416, intron 2 of 10) intron (NM_017416, intron 2 of 10) 174310 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 196.833-8 chr10 121590526 121590804 + 1.33333 NA intron (NM_001320658, intron 2 of 17) (ATGAT)n|Simple_repeat|Simple_repeat 3302 NM_023029 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 196.666-2 chr4 160862845 160863137 + 1.33333 NA Intergenic L1M3|LINE|L1 -1085207 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 276-4 chr10 13522219 13522495 + 1.33333 NA intron (NM_001370075, intron 1 of 8) intron (NM_001370075, intron 1 of 8) 3864 NM_001370075 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 186.833-14 chr15 84863559 84863828 + 1.33333 NA intron (NM_020778, intron 11 of 13) intron (NM_020778, intron 11 of 13) -20968 NM_001287761 9154 Hs.459187 NM_004213 ENSG00000156222 SLC28A1 CNT1|HCNT1 solute carrier family 28 member 1 protein-coding 148-31 chr14 101488321 101488474 + 1.33333 NA Intergenic L1MEf|LINE|L1 46321 NR_135240 100507277 Hs.123543 NR_135240 ENSG00000259082 LINC02314 - long intergenic non-protein coding RNA 2314 ncRNA 197.333-43 chr4 151843960 151844361 + 1.33333 NA Intergenic Intergenic -83137 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 257.333-7 chr14 67245815 67246022 + 1.33333 NA intron (NM_001256550, intron 1 of 14) L1MD|LINE|L1 4483 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 223.833-13 chr14 61290950 61291232 + 1.33333 NA Intergenic L4_A_Mam|LINE|RTE-X -9753 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 125.333-48 chr14 86150403 86150552 + 1.33333 NA Intergenic MER58A|DNA|hAT-Charlie 215799 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 160.666-2 chr11 90757796 90757935 + 1.33333 NA intron (NR_104190, intron 3 of 6) L2|LINE|L2 111337 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 416-4 chr9 92117895 92118473 + 1.33333 NA Intergenic Intergenic -2771 NM_001281303 10558 Hs.90458 NM_006415 ENSG00000090054 SPTLC1 HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI serine palmitoyltransferase long chain base subunit 1 protein-coding 125-5 chr1 108625408 108625554 + 1.33333 NA intron (NM_001010883, intron 6 of 10) intron (NM_001010883, intron 6 of 10) 35612 NM_001102592 113802 Hs.7962 NM_144584 ENSG00000162639 HENMT1 C1orf59|HEN1 HEN methyltransferase 1 protein-coding 301-7 chr9 28666885 28667265 + 1.33333 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 52230 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 241-22 chr6 120978409 120978748 + 1.33333 NA Intergenic Intergenic 355902 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 161-25 chr18 75812039 75812165 + 1.33333 NA Intergenic Intergenic -99699 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 330-3 chr12 78018439 78018899 + 1.33333 NA intron (NM_001024383, intron 8 of 39) intron (NM_001024383, intron 8 of 39) 187775 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 277.666-2 chr5 19083525 19083783 + 1.33333 NA Intergenic Intergenic 802618 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 300.333-10 chr17 81268313 81268647 + 1.33333 NA intron (NM_001037984, intron 10 of 15) AluSx|SINE|Alu 26827 NM_001037984 124565 Hs.352240 NM_138570 ENSG00000157637 SLC38A10 PP1744 solute carrier family 38 member 10 protein-coding 121-84 chr7 64734328 64734432 + 1.33333 NA Intergenic Intergenic 55316 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 261-4 chr10 57067341 57067569 + 1.33333 NA Intergenic L1MCa|LINE|L1 237104 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 188.5-46 chr5 166361300 166361646 + 1.33333 NA Intergenic Intergenic 564897 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 245.999 chr7 23254282 23254492 + 1.33333 NA intron (NM_001005340, intron 3 of 10) intron (NM_001005340, intron 3 of 10) 7612 NM_001005340 10457 Hs.190495 NM_002510 ENSG00000136235 GPNMB HGFIN|NMB|PLCA3 glycoprotein nmb protein-coding 390.333 chr1 185827678 185828205 + 1.33333 NA intron (NM_031935, intron 1 of 106) L1M7|LINE|L1 93550 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 240.833-22 chr5 121313941 121314247 + 1.33333 NA Intergenic L1MEb|LINE|L1 -8456 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 155-19 chr12 84343542 84343883 + 1.33333 NA Intergenic L1PA16|LINE|L1 569087 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 231.333-29 chr6 116724006 116724270 + 1.33333 NA TTS (NM_001366309) TTS (NM_001366309) 41581 NM_001085480 221303 Hs.126712 NM_001085480 ENSG00000183807 FAM162B C6orf189|bA86F4.2 family with sequence similarity 162 member B protein-coding 325-2 chr7 112623796 112624223 + 1.33333 NA intron (NR_110158, intron 1 of 7) MER41B|LTR|ERV1 1628 NR_110158 101928012 Hs.521131 NR_110158 ENSG00000223646 LOC101928012 - uncharacterized LOC101928012 ncRNA 202.333-23 chr2 135819724 135819893 + 1.33333 NA promoter-TSS (NR_045486) promoter-TSS (NR_045486) -383 NR_045486 100507600 Hs.662020 NR_045486 ENSG00000226806 LOC100507600 - uncharacterized LOC100507600 ncRNA 215.333-50 chr8 80080361 80080682 + 1.33333 NA non-coding (NR_105033, exon 1 of 9) non-coding (NR_105033, exon 1 of 9) 309 NM_001287140 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 272.5-10 chr2 189461078 189461401 + 1.33333 NA intron (NM_001303096, intron 9 of 21) intron (NM_001303096, intron 9 of 21) 19765 NM_032168 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 175.333-36 chr3 17163366 17163598 + 1.33333 NA intron (NM_014744, intron 21 of 21) intron (NM_014744, intron 21 of 21) 230286 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 323.666 chr17 64254457 64254739 + 1.33333 NA intron (NM_018469, intron 1 of 11) intron (NM_018469, intron 1 of 11) 8662 NM_018469 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 323.333-13 chr7 36857908 36858243 + 1.33333 NA intron (NM_001206480, intron 21 of 21) L1MC5|LINE|L1 61357 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 217.333-5 chr10 118357308 118357601 + 1.33333 NA intron (NR_108045, intron 1 of 2) intron (NR_108045, intron 1 of 2) 346 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 229.667-23 chr4 40727446 40727635 + 1.33333 NA Intergenic L1MB7|LINE|L1 -22415 NM_001330648 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 143.333-60 chr3 120218180 120218324 + 1.33333 NA intron (NM_001168271, intron 2 of 8) L1ME3A|LINE|L1 26043 NM_153002 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 305.333-13 chr6 53091628 53092074 + 1.33333 NA intron (NM_033481, intron 7 of 12) L2a|LINE|L2 20878 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 289.666 chr14 66091148 66091790 + 1.33333 NA Intergenic L1MC4a|LINE|L1 -394902 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 186.5-22 chr13 54757608 54757926 + 1.33333 NA Intergenic L1MC1|LINE|L1 -416687 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 151.666 chr12 34363477 34363596 + 1.33333 NA Intergenic Intergenic 341040 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 192.333-5 chr11 31962943 31963125 + 1.33333 NA Intergenic L1MB2|LINE|L1 78284 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 183-15 chr18 2635228 2635432 + 1.33333 NA Intergenic Intergenic 20065 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox 3 pseudogene 2 pseudo 229.333-34 chr8 119135379 119135601 + 1.33333 NA Intergenic Intergenic -66708 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 233.999 chr1 45144151 45144362 + 1.33333 NA intron (NM_020883, intron 1 of 13) AluJr|SINE|Alu 62349 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 192.167-4 chr10 22055428 22055726 + 1.33333 NA Intergenic Intergenic -51847 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 423.333 chr2 20804505 20804993 + 1.33333 NA intron (NM_021925, intron 1 of 6) intron (NM_021925, intron 1 of 6) 18352 NM_021925 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 212-37 chr7 139617334 139617594 + 1.33333 NA intron (NM_022740, intron 7 of 14) intron (NM_022740, intron 7 of 14) 93779 NM_001353368 154790 Hs.57806 NM_001080511 ENSG00000236279 CLEC2L - C-type lectin domain family 2 member L protein-coding 368.667-3 chr5 5760634 5761135 + 1.33333 NA Intergenic Intergenic 338207 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 236.834 chr1 155957263 155957458 + 1.33333 NA intron (NM_001350112, intron 13 of 21) Tigger8|DNA|TcMar-Tigger -6024 NR_106796 102465442 NR_106796 ENSG00000277817 MIR6738 hsa-mir-6738 microRNA 6738 ncRNA 142.333-66 chr22 29679194 29679444 + 1.33333 NA intron (NR_156186, intron 15 of 16) intron (NR_156186, intron 15 of 16) -40684 NM_182527 164633 Hs.643608 NM_182527 ENSG00000100314 CABP7 CALN2 calcium binding protein 7 protein-coding 236.667-28 chr4 70653502 70653788 + 1.33333 NA Intergenic MIRb|SINE|MIR 12863 NM_144646 3512 Hs.643431 NM_144646 ENSG00000132465 JCHAIN IGCJ|IGJ|JCH joining chain of multimeric IgA and IgM protein-coding 175.667-3 chr1 150397152 150397372 + 1.33333 NA intron (NM_015203, intron 1 of 10) AluSx1|SINE|Alu 33151 NM_015203 23248 Hs.213666 NM_015203 ENSG00000163125 RPRD2 HSPC099|KIAA0460 regulation of nuclear pre-mRNA domain containing 2 protein-coding 186.667-69 chr5 44564291 44564516 + 1.33333 NA Intergenic L1MC1|LINE|L1 -54121 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 226.166 chr1 96979998 96980261 + 1.33333 NA Intergenic Intergenic -115794 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 391.999 chr2 100399971 100400320 + 1.33333 NA intron (NM_004854, intron 4 of 6) intron (NM_004854, intron 4 of 6) 17523 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 307.666 chr5 28689354 28689606 + 1.33333 NA Intergenic Intergenic -237390 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 286-13 chr6 152572088 152572368 + 1.33333 NA intron (NM_182961, intron 3 of 145) intron (NM_182961, intron 3 of 145) 64623 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 244.167-18 chr6 82320456 82320701 + 1.33333 NA Intergenic Intergenic -42628 NM_006670 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 190.333-62 chrX 42349504 42349725 + 1.33333 NA Intergenic Intergenic -426060 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 276.333-22 chr8 81547533 81547792 + 1.33333 NA Intergenic Intergenic -16272 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 124-72 chr5 12604681 12604847 + 1.33333 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) 29907 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 124-60 chr20 39497929 39498107 + 1.33333 NA Intergenic MamGypLTR1b|LTR|Gypsy -273270 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 602.667 chr8 121638227 121638928 + 1.33333 NA promoter-TSS (NR_002835) promoter-TSS (NR_002835) -769 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 282.333-2 chr10 8129132 8129544 + 1.33333 NA Intergenic Intergenic 74650 NM_001002295 2625 Hs.524134 NM_002051 ENSG00000107485 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 254-14 chr21 29399720 29399979 + 1.33333 NA Intergenic L1ME1|LINE|L1 27348 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 329.333-5 chr2 176963160 176963461 + 1.33333 NA Intergenic Intergenic 249101 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 247.333-25 chr8 80530042 80530338 + 1.33333 NA Intergenic Intergenic 43964 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 125.167-22 chr14 45117652 45117842 + 1.33333 NA intron (NM_002013, intron 6 of 6) intron (NM_002013, intron 6 of 6) 6872 NR_003691 100113389 Hs.712501 NR_003691 ENSG00000239043 SNORD127 - small nucleolar RNA, C/D box 127 snoRNA 246.333-22 chr8 19569692 19569901 + 1.33333 NA intron (NM_001354495, intron 2 of 9) L1ME3|LINE|L1 32749 NM_001354494 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 169.833-13 chr12 40137482 40137725 + 1.33333 NA Intergenic Intergenic -18636 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 338-3 chr10 31654161 31654552 + 1.33333 NA Intergenic L1MEc|LINE|L1 254570 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 144.667-96 chr8 114410531 114410752 + 1.33333 NA Intergenic L1M5|LINE|L1 -973702 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 243.833-20 chr8 134165113 134165405 + 1.33333 NA Intergenic Intergenic 278763 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 125.167-47 chr2 224671049 224671260 + 1.33333 NA Intergenic Intergenic -85757 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 192.333-9 chr14 89601225 89601449 + 1.33333 NA intron (NM_001085471, intron 1 of 6) intron (NM_001085471, intron 1 of 6) 17828 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 281.333-17 chrX 133793003 133793326 + 1.33333 NA intron (NM_001164619, intron 1 of 6) intron (NM_001164619, intron 1 of 6) -104279 NR_148713 110806308 Hs.658628 NR_148713 ENSG00000286096 GPC3-AS1 - GPC3 antisense RNA 1 ncRNA 378.666 chr12 126516478 126516770 + 1.33333 NA Intergenic Intergenic -67297 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 224.666-4 chr2 6599688 6599862 + 1.33333 NA Intergenic L1M3|LINE|L1 34012 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 208.5-10 chr10 72664626 72664912 + 1.33333 NA Intergenic AluSg|SINE|Alu -27362 NR_073062 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 199-2 chr1 172179494 172179742 + 1.33333 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -34783 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 116.667-26 chr13 41880019 41880305 + 1.33333 NA intron (NM_001009814, intron 9 of 25) intron (NM_001009814, intron 9 of 25) 80923 NM_001009814 23078 Hs.368282 NM_015058 ENSG00000102763 VWA8 KIAA0564|P7BP2 von Willebrand factor A domain containing 8 protein-coding 138.666 chr1 119870171 119870316 + 1.33333 NA Intergenic Intergenic -25363 NM_001047980 343505 NM_001047980 NBPF7 - NBPF member 7 protein-coding 254.166 chr2 41529896 41530195 + 1.33333 NA Intergenic Intergenic -347510 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 300.333-17 chr8 77302637 77303006 + 1.33333 NA Intergenic Intergenic -147876 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 321.166-4 chr9 135235513 135236004 + 1.33333 NA Intergenic L1MEc|LINE|L1 54149 NR_046107 401557 Hs.640138 NR_046107 LOC401557 - uncharacterized LOC401557 ncRNA 385.666 chr16 12351207 12351721 + 1.33333 NA intron (NM_032167, intron 15 of 20) intron (NM_032167, intron 15 of 20) -368857 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 131.333-35 chr16 59024644 59024770 + 1.33333 NA Intergenic Intergenic -290391 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 224.666-5 chr2 167854029 167854233 + 1.33333 NA intron (NM_020981, intron 1 of 1) intron (NM_020981, intron 1 of 1) 35459 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 385.833 chr10 63534808 63535322 + 1.33333 NA intron (NM_001001330, intron 1 of 7) intron (NM_001001330, intron 1 of 7) -13175 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 160.333-59 chr7 114640038 114640268 + 1.33333 NA intron (NR_033767, intron 7 of 17) intron (NR_033767, intron 7 of 17) -13192 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 246.667-16 chr3 55043575 55043925 + 1.33333 NA intron (NM_018398, intron 35 of 37) L1ME1|LINE|L1 -76648 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 221.666-3 chr2 51833205 51833476 + 1.33333 NA intron (NR_135237, intron 6 of 10) L1MC5a|LINE|L1 -537308 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 254.667-28 chr7 78391097 78391403 + 1.33333 NA intron (NM_001301128, intron 6 of 20) intron (NM_001301128, intron 6 of 20) 44008 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 164.667-11 chr11 8486618 8486852 + 1.33333 NA intron (NM_001352388, intron 1 of 14) L2|LINE|L2 107241 NM_001352397 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 161.833-37 chr6 46760355 46760536 + 1.33333 NA Intergenic MIRb|SINE|MIR 13528 NM_001162435 100287718 Hs.736491 NM_001162435 ENSG00000230062 ANKRD66 - ankyrin repeat domain 66 protein-coding 193.5-49 chr6 39036673 39036959 + 1.33333 NA Intergenic Intergenic -11965 NM_002062 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 303.333-4 chr11 90168916 90169250 + 1.33333 NA intron (NM_001300930, intron 11 of 17) intron (NM_001300930, intron 11 of 17) 34420 NM_005467 10003 Hs.112482 NM_005467 ENSG00000077616 NAALAD2 GCPIII|GPCIII|NAADALASE2|NAALADASE2 N-acetylated alpha-linked acidic dipeptidase 2 protein-coding 199.834-5 chr3 157932097 157932263 + 1.33333 NA Intergenic Intergenic 173983 NM_006884 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 163.333-2 chr1 70864341 70864558 + 1.33333 NA intron (NR_028293, intron 3 of 4) intron (NR_028293, intron 3 of 4) 157996 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 185.666 chr10 9591642 9591862 + 1.33333 NA Intergenic L1M4|LINE|L1 -296159 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 236.166-2 chr14 19996359 19996578 + 1.33333 NA Intergenic L1ME3|LINE|L1 -5594 NM_001348271 390432 NM_001348271 ENSG00000196383 OR4Q2 OR4Q2P olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene) protein-coding 157.333-64 chr6 64023201 64023479 + 1.33333 NA intron (NM_001292009, intron 33 of 43) L1MB4|LINE|L1 216504 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 259.333-20 chr7 18361134 18361461 + 1.33333 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 71205 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 339.999-2 chr2 122305810 122306118 + 1.33333 NA Intergenic L1PA15|LINE|L1 550313 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 296.5-6 chr20 16594172 16594519 + 1.33333 NA Intergenic L1MB7|LINE|L1 -20897 NM_024704 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 350.333 chr17 52163496 52163911 + 1.33333 NA Intergenic L1ME1|LINE|L1 -3686 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 134.5-75 chr8 120414611 120414856 + 1.33333 NA intron (NM_014078, intron 5 of 6) intron (NM_014078, intron 5 of 6) 30417 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 185-53 chr8 121783533 121783879 + 1.33333 NA Intergenic Intergenic -142266 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 260.666-5 chr4 63502481 63502764 + 1.33333 NA Intergenic Intergenic 906828 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 266-3 chr10 56658322 56658644 + 1.33333 NA Intergenic L1M1|LINE|L1 -297210 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 209.333-26 chr22 28519805 28520036 + 1.33333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 60051 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 394.333-2 chr8 18357632 18358316 + 1.33333 NA Intergenic Intergenic -33308 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 209.333-35 chr4 28495626 28495812 + 1.33333 NA Intergenic Intergenic -323863 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 355.333 chr1 76643318 76643734 + 1.33333 NA Intergenic MLT1F2|LTR|ERVL-MaLR 135741 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 301.5-2 chr1 217560417 217560784 + 1.33333 NA intron (NM_018040, intron 5 of 9) intron (NM_018040, intron 5 of 9) 70490 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 134-86 chr5 20134286 20134412 + 1.33333 NA intron (NM_001291956, intron 2 of 14) L1MC3|LINE|L1 -146149 NM_001349561 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 123.333-76 chr3 156314440 156314626 + 1.33333 NA intron (NM_172159, intron 1 of 13) intron (NM_172159, intron 1 of 13) 23496 NM_001308222 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 148.5-70 chr8 113649757 113650173 + 1.33333 NA Intergenic Intergenic -213026 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 254-22 chr5 35554796 35555040 + 1.33333 NA Intergenic Intergenic -62945 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 224.667-27 chr4 138967481 138967786 + 1.33333 NA intron (NR_133945, intron 2 of 2) intron (NR_133945, intron 2 of 2) 45013 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 239.333-20 chr7 14824804 14825026 + 1.33333 NA intron (NM_001350717, intron 2 of 24) intron (NM_001350717, intron 2 of 24) 16535 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 241.166-3 chr8 92727121 92727535 + 1.33333 NA intron (NR_046114, intron 1 of 2) L2c|LINE|L2 58732 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 264-19 chr7 92000777 92001066 + 1.33333 NA exon (NM_005751, exon 8 of 50) exon (NM_005751, exon 8 of 50) 60046 NM_005751 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 240-16 chr19 16420998 16421198 + 1.33333 NA intron (NM_021235, intron 10 of 22) intron (NM_021235, intron 10 of 22) 50872 NM_001258374 58513 Hs.654639 NM_021235 ENSG00000127527 EPS15L1 EPS15R epidermal growth factor receptor pathway substrate 15 like 1 protein-coding 381.333-3 chr17 5354194 5354576 + 1.33333 NA exon (NM_004703, exon 8 of 18) exon (NM_004703, exon 8 of 18) -65256 NM_001160246 84268 Hs.462086 NM_032308 ENSG00000129197 RPAIN HRIP|RIP RPA interacting protein protein-coding 185.667-59 chr8 126662471 126662781 + 1.33333 NA Intergenic L1MC1|LINE|L1 -104148 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 383.333-2 chr17 60969909 60970581 + 1.33333 NA intron (NM_001330413, intron 14 of 25) L1MEf|LINE|L1 292394 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 295.999-4 chr5 93576036 93576299 + 1.33333 NA intron (NR_109818, intron 1 of 6) intron (NR_109818, intron 1 of 6) -4824 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 172.666 chr10 28597499 28597661 + 1.33333 NA intron (NM_100264, intron 7 of 13) intron (NM_100264, intron 7 of 13) 64462 NM_100486 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 174.5-31 chr4 64311282 64311465 + 1.33333 NA intron (NM_001363796, intron 5 of 11) L2a|LINE|L2 98077 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 161.333-70 chr7 47188220 47188411 + 1.33333 NA Intergenic Intergenic 276488 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 189.333-31 chr2 210454875 210455065 + 1.33333 NA intron (NR_110605, intron 3 of 5) intron (NR_110605, intron 3 of 5) 21735 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 286.334-2 chr11 99773760 99774130 + 1.33333 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 217800 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 188.666 chr12 75500060 75500258 + 1.33333 NA 3' UTR (NM_006851, exon 6 of 6) 3' UTR (NM_006851, exon 6 of 6) 11450 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 300.166-2 chr7 52759062 52759413 + 1.33333 NA Intergenic Intergenic -276396 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 577.5 chr1 174142601 174143431 + 1.33333 NA intron (NR_121197, intron 3 of 3) AluJo|SINE|Alu 16271 NR_121197 102724601 Hs.563791 NR_121197 ENSG00000227373 RABGAP1L-DT - RABGAP1L divergent transcript ncRNA 262.666-4 chr6 71763691 71763900 + 1.33333 NA Intergenic Intergenic -122908 NM_014989 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 177.333-48 chr4 143782505 143782657 + 1.33333 NA Intergenic Intergenic 46767 NR_134680 105377458 Hs.738046 NR_134680 LOC105377458 - uncharacterized LOC105377458 ncRNA 267.999 chr17 65258175 65258404 + 1.33333 NA Intergenic LTR16C|LTR|ERVL 120919 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 195.333-52 chr7 13357099 13357388 + 1.33333 NA Intergenic Intergenic 629271 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 477.833-2 chr6 168007486 168008150 + 1.33333 NA Intergenic LTR51|LTR|ERV1 -10055 NM_030615 3834 Hs.150013 NM_005355 ENSG00000125337 KIF25 KNSL3 kinesin family member 25 protein-coding 183.833-2 chr1 165430538 165430782 + 1.33333 NA intron (NM_001256570, intron 1 of 10) intron (NM_001256570, intron 1 of 10) -5676 NM_001256571 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 149.166-2 chr4 58787983 58788131 + 1.33333 NA Intergenic Intergenic -196225 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 233.333-40 chr7 4281696 4281905 + 1.33333 NA Intergenic Intergenic -146963 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 282.666-7 chr7 32883515 32883849 + 1.33333 NA intron (NM_015483, intron 1 of 3) intron (NM_015483, intron 1 of 3) 8078 NM_015483 25948 Hs.372541 NM_015483 ENSG00000170852 KBTBD2 BKLHD1 kelch repeat and BTB domain containing 2 protein-coding 254.999 chr2 53916943 53917145 + 1.33333 NA intron (NM_014614, intron 20 of 46) intron (NM_014614, intron 20 of 46) 53949 NM_014614 23198 Hs.413801 NM_014614 ENSG00000068878 PSME4 PA200 proteasome activator subunit 4 protein-coding 397.666-3 chr6 134992259 134992655 + 1.33333 NA intron (NM_006620, intron 8 of 17) Tigger3|DNA|TcMar-Tigger -13025 NR_037435 100500880 NR_037435 ENSG00000283409 MIR3662 mir-3662 microRNA 3662 ncRNA 262.333-14 chr2 175093510 175093731 + 1.33333 NA intron (NR_045773, intron 10 of 13) intron (NR_045773, intron 10 of 13) 74089 NR_030630 100126350 NR_030630 ENSG00000215973 MIR933 MIRN933|hsa-mir-933|mir-933 microRNA 933 ncRNA 156.833-10 chr10 80847400 80847740 + 1.33333 NA Intergenic AluSc5|SINE|Alu 197773 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 379.166 chr1 106157705 106158049 + 1.33333 NA Intergenic Intergenic -129624 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 194.666-3 chr12 39046401 39046556 + 1.33333 NA Intergenic Intergenic -140887 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 236.666-3 chr17 55259841 55260339 + 1.33333 NA Intergenic Intergenic -4870 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 267.333-24 chr9 135905946 135906207 + 1.33333 NA intron (NM_015447, intron 1 of 16) intron (NM_015447, intron 1 of 16) 1470 NM_015447 157922 Hs.522493 NM_015447 ENSG00000130559 CAMSAP1 - calmodulin regulated spectrin associated protein 1 protein-coding 261.333-8 chr20 22975775 22976116 + 1.33333 NA Intergenic Charlie4a|DNA|hAT-Charlie -59475 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 207.666-5 chr2 35584369 35584533 + 1.33333 NA Intergenic MER66-int|LTR|ERV1 113046 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 273-13 chr6 88304804 88305093 + 1.33333 NA Intergenic L1ME3G|LINE|L1 -137599 NM_001370546 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 290.333-4 chr12 9283110 9283563 + 1.33333 NA promoter-TSS (NR_024374) promoter-TSS (NR_024374) -321 NR_024374 642846 Hs.447869 NR_024374 LOC642846 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like ncRNA 290-9 chr5 136201844 136202295 + 1.33333 NA Intergenic Intergenic -8907 NM_001350994 389332 Hs.127680 NM_001350994 ENSG00000271824 SMIM32 - small integral membrane protein 32 protein-coding 226.666-3 chr2 39285705 39285919 + 1.33333 NA intron (NM_003618, intron 21 of 33) intron (NM_003618, intron 21 of 33) -41829 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 254.166-2 chr20 59935586 59935960 + 1.33333 NA TTS (NM_006242) TTS (NM_006242) 1994 NM_001190826 63939 Hs.54973 NM_022106 ENSG00000196227 FAM217B C20orf177|dJ551D2.5 family with sequence similarity 217 member B protein-coding 320.833-4 chr3 112172823 112173078 + 1.33333 NA intron (NM_001320531, intron 22 of 27).2 L1MD|LINE|L1 39527 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 229-48 chr8 127417276 127417459 + 1.33333 NA TTS (NM_001159542) TTS (NM_001159542) 1542 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 241.333-23 chr5 62726847 62727132 + 1.33333 NA Intergenic Intergenic 148170 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 192.666-2 chr2 128295874 128296127 + 1.33333 NA intron (NM_004807, intron 1 of 1) MLT1A0|LTR|ERVL-MaLR 22868 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 116-11 chr10 92724671 92724827 + 1.33333 NA Intergenic L1ME3Cz|LINE|L1 34794 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 263.999 chr17 58001109 58001341 + 1.33333 NA non-coding (NR_034041, exon 4 of 4) non-coding (NR_034041, exon 4 of 4) 6021 NM_001078166 6426 Hs.68714 NM_006924 ENSG00000136450 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine and arginine rich splicing factor 1 protein-coding 430.833 chr9 102374461 102375111 + 1.33333 NA Intergenic Intergenic -144851 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 237-17 chr5 55177020 55177238 + 1.33333 NA Intergenic Intergenic -3952 NM_001170402 166979 Hs.669184 NM_152623 ENSG00000164287 CDC20B G6VTS76519 cell division cycle 20B protein-coding 297.333-8 chr5 64888640 64889026 + 1.33333 NA intron (NM_005869, intron 11 of 13) L1MC4a|LINE|L1 119903 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 158.333-55 chr4 137340060 137340445 + 1.33333 NA Intergenic Intergenic -127453 NR_149105 105377441 Hs.668386 NR_149105 LINC02511 - long intergenic non-protein coding RNA 2511 ncRNA 156.333-68 chr4 32390302 32390473 + 1.33333 NA Intergenic Intergenic 39349 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 134.166-2 chr3 157869622 157869824 + 1.33333 NA Intergenic AluSq2|SINE|Alu 236440 NM_006884 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 120-82 chr4 97440014 97440171 + 1.33333 NA intron (NR_102713, intron 2 of 5) intron (NR_102713, intron 2 of 5) 73166 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 267.166 chr10 60404676 60404934 + 1.33333 NA intron (NM_001204403, intron 2 of 43) L1ME2z|LINE|L1 -14930 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 315.667-13 chr4 105116041 105116602 + 1.33333 NA Intergenic Intergenic -29554 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 181-4 chr1 182676880 182677163 + 1.33333 NA Intergenic Intergenic -4089 NM_001102450 85397 Hs.20982 NM_033345 ENSG00000135824 RGS8 - regulator of G protein signaling 8 protein-coding 163.833-35 chr2 158188225 158188480 + 1.33333 NA intron (NM_138803, intron 11 of 13) L4_A_Mam|LINE|RTE-X 21702 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 246.333-3 chr11 75608471 75608681 + 1.33333 NA intron (NM_207577, intron 1 of 2) MIRc|SINE|MIR 25380 NR_145823 105369391 Hs.689687 NR_145823 ENSG00000255326 LOC105369391 - uncharacterized LOC105369391 ncRNA 204.667-50 chr9 100659262 100659702 + 1.33333 NA Intergenic Intergenic 81403 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 151.333-36 chr18 4941976 4942194 + 1.33333 NA Intergenic LTR33|LTR|ERVL -139097 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 248.666-2 chr13 99220350 99220693 + 1.33333 NA intron (NR_026644, intron 1 of 8) intron (NR_026644, intron 1 of 8) 19667 NR_026644 337867 Hs.508545 NM_177967 ENSG00000134882 UBAC2 PHGDHL1 UBA domain containing 2 protein-coding 273.333-5 chr15 26505884 26506230 + 1.33333 NA Intergenic Intergenic 123033 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 138.666-3 chr7 15006289 15006416 + 1.33333 NA Intergenic Intergenic -31494 NM_001350722 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 254.5-15 chr6 87101327 87101684 + 1.33333 NA Intergenic MSTB1|LTR|ERVL-MaLR -6399 NM_001252383 1081 Hs.119689 NM_000735 ENSG00000135346 CGA CG-ALPHA|FSHA|GPA1|GPHA1|GPHa|HCG|LHA|TSHA glycoprotein hormones, alpha polypeptide protein-coding 526.666 chr2 65959602 65960698 + 1.33333 NA Intergenic L1ME4a|LINE|L1 398178 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 214.167-11 chr2 30430663 30431262 + 1.33333 NA Intergenic AluY|SINE|Alu -16284 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 238.666-2 chr18 12730394 12730614 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger 18918 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 408.999 chr9 87836318 87836795 + 1.33333 NA Intergenic Intergenic -8189 NR_033405 1518 Hs.726015 NR_033405 CTSLP8 CTSL1P8 cathepsin L pseudogene 8 pseudo 254.833-8 chr20 56068783 56069059 + 1.33333 NA Intergenic Intergenic -63402 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 392.167-3 chr2 24511280 24511885 + 1.33333 NA intron (NM_001362952, intron 1 of 23) L1MB5|LINE|L1 19705 NM_001362952 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 141.333-62 chr3 158796542 158796689 + 1.33333 NA Intergenic L1M5|LINE|L1 -5439 NM_001167903 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 349.334-2 chr5 100739030 100739684 + 1.33333 NA Intergenic L1MB7|LINE|L1 77208 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 161.5-10 chr13 68767029 68767215 + 1.33333 NA Intergenic Intergenic 118203 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 237.166-2 chr6 137109122 137109622 + 1.33333 NA Intergenic Intergenic -64192 NM_001278723 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 205.666-2 chr19 11788755 11788960 + 1.33333 NA Intergenic L1MA3|LINE|L1 -9666 NM_152356 126069 Hs.631634 NM_152356 ENSG00000177599 ZNF491 - zinc finger protein 491 protein-coding 212-36 chr7 104259452 104259670 + 1.33333 NA Intergenic L1M5|LINE|L1 -51514 NM_181747 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 316.333-3 chr10 110542829 110543173 + 1.33333 NA Intergenic L2b|LINE|L2 -24690 NM_005445 9126 Hs.24485 NM_005445 ENSG00000108055 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 228.5-23 chr4 63088295 63088675 + 1.33333 NA Intergenic Intergenic -926720 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 254-23 chr5 73529364 73529654 + 1.33333 NA Intergenic L4_A_Mam|LINE|RTE-X 31084 NM_001207 689 Hs.591768 NM_001207 ENSG00000145741 BTF3 BETA-NAC|BTF3a|BTF3b|NACB basic transcription factor 3 protein-coding 184.667-25 chr17 60508144 60508387 + 1.33333 NA intron (NM_006380, intron 1 of 12) intron (NM_006380, intron 1 of 12) 17975 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 192-7 chr10 64537225 64537377 + 1.33333 NA Intergenic Intergenic -288227 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 137.666 chr15 59500629 59500816 + 1.33333 NA intron (NM_152450, intron 4 of 8) L1M4b|LINE|L1 62536 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 212.833-12 chr20 10396452 10396714 + 1.33333 NA Intergenic L1ME3Cz|LINE|L1 35342 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 267.667-22 chr8 117027094 117027570 + 1.33333 NA intron (NM_001172813, intron 2 of 10) L2b|LINE|L2 76357 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 280.333-16 chr5 122531061 122531473 + 1.33333 NA Intergenic Intergenic -52180 NR_051996 153163 Hs.679757 NR_051996 ENSG00000250328 MGC32805 - uncharacterized LOC153163 ncRNA 130.667-4 chr1 110586332 110586493 + 1.33333 NA Intergenic L2a|LINE|L2 19946 NM_004974 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 204.667-17 chr12 97628754 97629024 + 1.33333 NA Intergenic FLAM_A|SINE|Alu 65077 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 188.833-12 chr12 75185122 75185307 + 1.33333 NA intron (NM_001260499, intron 2 of 3) intron (NM_001260499, intron 2 of 3) 24534 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 123.167-53 chr2 127685762 127685914 + 1.33333 NA Intergenic L1MEc|LINE|L1 -4052 NM_001161404 55679 Hs.469881 NM_017980 ENSG00000072163 LIMS2 LGMD2W|MDRCMTT|PINCH-2|PINCH2 LIM zinc finger domain containing 2 protein-coding 252-12 chr5 126832823 126833150 + 1.33333 NA intron (NR_134488, intron 11 of 11) Charlie7a|DNA|hAT-Charlie 55850 NM_005573 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 127.333-43 chr17 55168037 55168154 + 1.33333 NA 3' UTR (NM_178509, exon 18 of 18) 3' UTR (NM_178509, exon 18 of 18) -96865 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 335.333-3 chr3 46607012 46607312 + 1.33333 NA Intergenic Intergenic -5363 NM_001195442 100132146 Hs.679623 NM_001195442 ENSG00000283473 FAM240A - family with sequence similarity 240 member A protein-coding 134-95 chr7 28656465 28656595 + 1.33333 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -29603 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 171.833-4 chr1 116895358 116895566 + 1.33333 NA Intergenic L1ME1|LINE|L1 -14454 NM_020440 5738 Hs.418093 NM_020440 ENSG00000134247 PTGFRN CD315|CD9P-1|EWI-F|FPRP|SMAP-6 prostaglandin F2 receptor inhibitor protein-coding 223.333-28 chr4 66631656 66631876 + 1.33333 NA Intergenic LTR78|LTR|ERV1 354942 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 204-27 chr3 178506956 178507207 + 1.33333 NA Intergenic Intergenic -29355 NM_181361 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 178.833-40 chr9 30192406 30192638 + 1.33333 NA Intergenic Intergenic 215932 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 448.499 chr2 210154665 210155123 + 1.33333 NA intron (NM_001307976, intron 1 of 13) intron (NM_001307976, intron 1 of 13) 16515 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 158.167-13 chr15 88790880 88791103 + 1.33333 NA Intergenic Intergenic -12445 NM_001369268 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 143.667-21 chr11 62267111 62267245 + 1.33333 NA Intergenic Intergenic -2980 NM_002411 4250 Hs.46452 NM_002411 ENSG00000110484 SCGB2A2 MGB1|UGB2 secretoglobin family 2A member 2 protein-coding 259.667-6 chr14 40661945 40662325 + 1.33333 NA Intergenic Intergenic -292576 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 232-3 chr1 234043916 234044396 + 1.33333 NA intron (NM_173508, intron 2 of 7) MSTB2|LTR|ERVL-MaLR 139480 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 156.833-56 chr8 23918980 23919204 + 1.33333 NA Intergenic L1ME4c|LINE|L1 -64286 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 199.667-53 chr6 132273907 132274168 + 1.33333 NA Intergenic Intergenic 127438 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 252-4 chr14 48526682 48527018 + 1.33333 NA Intergenic L1PA15|LINE|L1 -731836 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 338-9 chr3 25119967 25120515 + 1.33333 NA intron (NM_001290216, intron 3 of 10) intron (NM_001290216, intron 3 of 10) -220561 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 228.833-16 chr5 4442819 4443167 + 1.33333 NA Intergenic A-rich|Low_complexity|Low_complexity -330488 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 305.5-8 chr4 41809933 41810248 + 1.33333 NA Intergenic Intergenic -61120 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 167.667-20 chr12 42319169 42319353 + 1.33333 NA intron (NM_033114, intron 3 of 7) intron (NM_033114, intron 3 of 7) 4598 NR_107005 102467003 NR_107005 ENSG00000278520 MIR7851 hsa-mir-7851 microRNA 7851 ncRNA 355.667 chr1 118659472 118659943 + 1.33333 NA Intergenic Intergenic 328636 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 400.999 chr9 73414067 73414552 + 1.33333 NA Intergenic Tigger3c|DNA|TcMar-Tigger 262444 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 168.833-15 chr12 46066115 46066513 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger -75740 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 200.5-19 chr19 30015432 30015597 + 1.33333 NA non-coding (NR_045557, exon 10 of 10) non-coding (NR_045557, exon 10 of 10) 73275 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 159.333-36 chr2 59965846 59965983 + 1.33333 NA Intergenic Intergenic 417122 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 141.333-60 chr3 69838994 69839145 + 1.33333 NA intron (NM_001354608, intron 2 of 10) intron (NM_001354608, intron 2 of 10) -27155 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 266-16 chr4 65445863 65446228 + 1.33333 NA intron (NM_001281767, intron 5 of 16) L2|LINE|L2 223443 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 162.334 chr1 61317387 61317583 + 1.33333 NA intron (NM_001134673, intron 3 of 10) intron (NM_001134673, intron 3 of 10) -63967 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 237.667-17 chr7 45483021 45483457 + 1.33333 NA Intergenic L3|LINE|CR1 -90901 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 222.667-13 chr15 72528072 72528438 + 1.33333 NA intron (NM_005744, intron 2 of 13) intron (NM_005744, intron 2 of 13) 53925 NM_005744 25820 Hs.268787 NM_005744 ENSG00000166233 ARIH1 ARI|HARI|HHARI|UBCH7BP ariadne RBR E3 ubiquitin protein ligase 1 protein-coding 188.167-45 chr8 123404752 123405022 + 1.33333 NA Intergenic MLT1C|LTR|ERVL-MaLR -8440 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 224-40 chr9 69082569 69082819 + 1.33333 NA Intergenic HAL1|LINE|L1 -38570 NM_001170414 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 270.166-3 chr2 195392207 195392409 + 1.33333 NA Intergenic Intergenic -264650 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 261.833-4 chr13 112065221 112065498 + 1.33333 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) -1790 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 167-23 chr14 53737907 53738053 + 1.33333 NA Intergenic Intergenic 210504 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 356.666 chr10 82599997 82600384 + 1.33333 NA intron (NR_163253, intron 3 of 10) L1M6B|LINE|L1 -367270 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 212-10 chr14 74309826 74310002 + 1.33333 NA Intergenic L1MC|LINE|L1 -6980 NM_001353606 5826 Hs.94395 NM_005050 ENSG00000119688 ABCD4 ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L ATP binding cassette subfamily D member 4 protein-coding 135-9 chr1 228725845 228726054 + 1.33333 NA intron (NR_037962, intron 1 of 2) intron (NR_037962, intron 1 of 2) -9530 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 271.167-4 chr10 21677279 21677594 + 1.33333 NA intron (NM_001195626, intron 11 of 22) MER2|DNA|TcMar-Tigger 143264 NM_001195628 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 208.333-44 chr9 27439204 27439412 + 1.33333 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -85006 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 322.833-3 chr2 99407838 99408321 + 1.33333 NA exon (NM_016316, exon 15 of 23) exon (NM_016316, exon 15 of 23) 70690 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 169.333-59 chr5 133180131 133180377 + 1.33333 NA Intergenic L1ME3B|LINE|L1 128241 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 208.333-33 chr5 30634383 30634668 + 1.33333 NA Intergenic L1MB1|LINE|L1 -559161 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 244.666-3 chr2 17417589 17417949 + 1.33333 NA Intergenic L1MA5|LINE|L1 100671 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 129.333-32 chr14 71374301 71374449 + 1.33333 NA intron (NM_001354285, intron 2 of 24) intron (NM_001354285, intron 2 of 24) -23962 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 259.5-17 chr5 64577623 64577926 + 1.33333 NA intron (NM_001271891, intron 1 of 3) (ACACAT)n|Simple_repeat|Simple_repeat 2124 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 250-30 chrX 96099430 96099703 + 1.33333 NA Intergenic L1ME1|LINE|L1 238336 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 133.166-2 chr10 109302795 109302916 + 1.33333 NA Intergenic MER67C|LTR|ERV1 620391 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 369.667 chr5 2089348 2089931 + 1.33333 NA Intergenic L1MEc|LINE|L1 202308 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 474.5 chr20 58904009 58904741 + 1.33333 NA intron (NM_080425, intron 5 of 12) intron (NM_080425, intron 5 of 12) 12212 NR_132272 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 217.166-4 chr14 42756252 42756488 + 1.33333 NA Intergenic Tigger3a|DNA|TcMar-Tigger 1149514 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 205-41 chr8 88728942 88729310 + 1.33333 NA Intergenic AluY|SINE|Alu -401643 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 168.333-22 chr16 80401164 80401300 + 1.33333 NA intron (NR_120307, intron 2 of 5) L1MC5|LINE|L1 -139502 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 228.666 chr13 79134603 79134814 + 1.33333 NA Intergenic L1MC|LINE|L1 271513 NM_001286631 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 367-2 chr2 181643018 181643713 + 1.33333 NA intron (NR_027690, intron 1 of 11) intron (NR_027690, intron 1 of 11) 13740 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 143.667-113 chrX 44845315 44845577 + 1.33333 NA TTS (NM_022076) TTS (NM_022076) 1425 NM_022076 63904 Hs.534478 NM_022076 ENSG00000189037 DUSP21 LMWDSP21 dual specificity phosphatase 21 protein-coding 150-8 chr10 93159838 93160001 + 1.33333 NA Intergenic L1MC1|LINE|L1 86026 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 214.833-5 chr13 49703568 49703844 + 1.33333 NA intron (NM_002267, intron 15 of 16) intron (NM_002267, intron 15 of 16) -12219 NR_103803 84650 Hs.433278 NM_032565 ENSG00000123179 EBPL EBRP EBP like protein-coding 277.666 chr2 166232595 166232861 + 1.33333 NA intron (NM_001365536, intron 21 of 26) intron (NM_001365536, intron 21 of 26) -83567 NM_001353950 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 354.167-2 chr11 111917058 111917546 + 1.33333 NA intron (NR_037651, intron 1 of 4) L2|LINE|L2 -1611 NM_080659 91894 Hs.97013 NM_080659 ENSG00000149300 C11orf52 - chromosome 11 open reading frame 52 protein-coding 126.333-14 chr10 112498987 112499185 + 1.33333 NA intron (NM_001365712, intron 3 of 8) intron (NM_001365712, intron 3 of 8) -51483 NM_001351082 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 173.333-29 chr2 22736827 22737136 + 1.33333 NA Intergenic L1MB1|LINE|L1 200502 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 235.999 chr8 121644420 121644601 + 1.33333 NA non-coding (NR_002835, exon 4 of 4) non-coding (NR_002835, exon 4 of 4) -3070 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 523.999 chr8 130872073 130872625 + 1.33333 NA intron (NM_001115, intron 8 of 17) MIRb|SINE|MIR 168560 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 148-82 chr8 110093978 110094142 + 1.33333 NA Intergenic Intergenic -118289 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 419.333-2 chr14 43777997 43778521 + 1.33333 NA Intergenic Intergenic 729024 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 295.667-3 chr2 26438645 26439039 + 1.33333 NA intron (NM_145038, intron 7 of 16) intron (NM_145038, intron 7 of 16) 36922 NM_145038 92749 Hs.393714 NM_145038 ENSG00000157856 DRC1 C2orf39|CCDC164|CILD21 dynein regulatory complex subunit 1 protein-coding 350-6 chr5 112022831 112023304 + 1.33333 NA Intergenic L2|LINE|L2 -46135 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 343.667-4 chr4 41449622 41450114 + 1.33333 NA intron (NM_001289122, intron 1 of 25) MLT1C|LTR|ERVL-MaLR -88289 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 252.833-2 chr1 242528431 242528848 + 1.33333 NA Intergenic MIRc|SINE|MIR -3942 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 362.334 chr14 86485906 86486308 + 1.33333 NA Intergenic Intergenic -419671 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 117.833-39 chr18 7816814 7816949 + 1.33333 NA intron (NM_002845, intron 2 of 30) Charlie2b|DNA|hAT-Charlie 249565 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 138.5-88 chr8 142266132 142266474 + 1.33333 NA intron (NM_001366901, intron 12 of 13) L1MEd|LINE|L1 67947 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 179.5-43 chr9 37196607 37196914 + 1.33333 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 76162 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 121-60 chr3 111343093 111343187 + 1.33333 NA Intergenic Intergenic -199057 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 293.666-2 chr1 237836318 237836644 + 1.33333 NA Intergenic Intergenic -25694 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 231.334-7 chr8 138554938 138555164 + 1.33333 NA Intergenic Intergenic -57321 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 305.5-5 chr22 45923567 45924012 + 1.33333 NA intron (NM_058238, intron 3 of 3) L2b|LINE|L2 53373 NM_058238 7477 Hs.512714 NM_058238 ENSG00000188064 WNT7B - Wnt family member 7B protein-coding 356.666-2 chr12 114805386 114805820 + 1.33333 NA Intergenic MLT1A1|LTR|ERVL-MaLR -121428 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 476.166 chr11 27388188 27388657 + 1.33333 NA intron (NM_018490, intron 4 of 17) intron (NM_018490, intron 4 of 17) -25174 NM_080654 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 210.333-16 chr19 41082599 41082800 + 1.33333 NA Intergenic L1M2|LINE|L1 -5752 NM_000766 1553 Hs.567252 NM_000766 ENSG00000197838 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450 family 2 subfamily A member 13 protein-coding 271.833-7 chr15 65490056 65490541 + 1.33333 NA non-coding (NR_135486, exon 7 of 22) non-coding (NR_135486, exon 7 of 22) 26976 NM_197960 54878 Hs.458609 NM_017743 ENSG00000074603 DPP8 DP8|DPRP-1|DPRP1|MST097|MSTP097|MSTP135|MSTP141 dipeptidyl peptidase 8 protein-coding 260-2 chr1 83028243 83028584 + 1.33333 NA intron (NR_147074, intron 5 of 10) intron (NR_147074, intron 5 of 10) -42205 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 291.5-6 chr17 55435203 55435775 + 1.33333 NA Intergenic L2c|LINE|L2 -13654 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 170.667-64 chr6 133723037 133723252 + 1.33333 NA intron (NR_109982, intron 4 of 8) L1ME3Cz|LINE|L1 -98003 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 245.834-2 chr1 65277610 65277978 + 1.33333 NA intron (NM_014787, intron 1 of 18) LTR36|LTR|ERV1 13045 NM_014787 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 140.666-4 chr8 92300714 92300858 + 1.33333 NA Intergenic L2a|LINE|L2 -197401 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 380.667-2 chr14 22281304 22281620 + 1.33333 NA Intergenic Intergenic 151291 NR_148363 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 160-32 chr15 98062692 98062894 + 1.33333 NA Intergenic L1MD1|LINE|L1 25960 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 267.333-23 chr8 83258427 83258724 + 1.33333 NA Intergenic Intergenic -145183 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 262-3 chr10 58757864 58758385 + 1.33333 NA intron (NM_001080512, intron 3 of 20) Tigger16b|DNA|TcMar-Tigger 43109 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 214-35 chr5 57184513 57184823 + 1.33333 NA intron (NM_001331037, intron 2 of 12) MSTB|LTR|ERVL-MaLR 9220 NM_001127235 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 217-33 chr8 83725548 83725791 + 1.33333 NA Intergenic MER57-int|LTR|ERV1 321911 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 167.5-43 chr3 155145018 155145212 + 1.33333 NA intron (NM_000902, intron 14 of 22) intron (NM_000902, intron 14 of 22) 65104 NM_001354643 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 304.333-2 chr10 55200624 55200971 + 1.33333 NA intron (NM_001354404, intron 2 of 34) MSTA|LTR|ERVL-MaLR -398245 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 283.666-4 chrX 40226195 40226724 + 1.33333 NA Intergenic AluY|SINE|Alu -36458 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 257.833-12 chr6 151146020 151146375 + 1.33333 NA Intergenic Intergenic 43522 NR_162145 113219461 NR_162145 MIR12131 - microRNA 12131 ncRNA 279.167-3 chr10 112505521 112506324 + 1.33333 NA intron (NM_001365712, intron 3 of 8) intron (NM_001365712, intron 3 of 8) -58319 NM_001351082 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 118.667-110 chr8 55795317 55795483 + 1.33333 NA intron (NM_001317902, intron 5 of 10) intron (NM_001317902, intron 5 of 10) 21954 NM_001317902 96764 Hs.335068 NM_024831 ENSG00000137574 TGS1 NCOA6IP|PIMT|PIPMT trimethylguanosine synthase 1 protein-coding 335.999 chr2 72566126 72566645 + 1.33333 NA intron (NR_135774, intron 7 of 19) L1ME1|LINE|L1 259648 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 197.166 chr12 76956472 76956705 + 1.33333 NA Intergenic L2a|LINE|L2 -77569 NM_001321 1466 Hs.530904 NM_001321 ENSG00000175183 CSRP2 CRP2|LMO5|SmLIM cysteine and glycine rich protein 2 protein-coding 346.333-4 chr20 62187044 62187340 + 1.33333 NA intron (NM_015666, intron 1 of 6) L1MEf|LINE|L1 4167 NM_015666 26164 Hs.340636 NM_015666 ENSG00000101181 MTG2 GTPBP5|ObgH1|dJ1005F21.2 mitochondrial ribosome associated GTPase 2 protein-coding 208.333-5 chr10 13637682 13638022 + 1.33333 NA Intergenic Intergenic 50887 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 192.833-31 chr6 144941373 144941621 + 1.33333 NA Intergenic Intergenic 535842 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 283.5-14 chr7 46379930 46380291 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger 317012 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 258.666-3 chr6 135901499 135901715 + 1.33333 NA intron (NM_018945, intron 1 of 12) intron (NM_018945, intron 1 of 12) 49906 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 280.167-14 chr8 123501480 123501973 + 1.33333 NA 3' UTR (NM_001242463, exon 7 of 7) 3' UTR (NM_001242463, exon 7 of 7) 30417 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 179.167-20 chr18 1660506 1660852 + 1.33333 NA Intergenic HAL1|LINE|L1 -301050 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 271.666-3 chr2 226573571 226573905 + 1.33333 NA Intergenic Intergenic 85055 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 366.333 chr10 48398458 48398935 + 1.33333 NA intron (NM_001323302, intron 3 of 13) L1ME3B|LINE|L1 -2916 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 249.166-2 chr9 29687522 29687780 + 1.33333 NA Intergenic L1M4b|LINE|L1 -474050 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 166-62 chr7 23280328 23280557 + 1.33333 NA Intergenic Intergenic -18897 NM_138446 115416 Hs.87385 NM_138446 ENSG00000156928 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 210.333-11 chr14 63981035 63981296 + 1.33333 NA exon (NM_182914, exon 16 of 116) exon (NM_182914, exon 16 of 116) 113960 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 278.666-2 chr2 85157086 85157554 + 1.33333 NA intron (NM_031283, intron 3 of 11) MIRb|SINE|MIR 23928 NM_031283 83439 Hs.516297 NM_031283 ENSG00000152284 TCF7L1 TCF-3|TCF3 transcription factor 7 like 1 protein-coding 198-46 chr4 185595132 185595512 + 1.33333 NA intron (NM_001145672, intron 18 of 20) intron (NM_001145672, intron 18 of 20) -59764 NM_014476 27295 Hs.701364 NM_014476 ENSG00000154553 PDLIM3 ALP PDZ and LIM domain 3 protein-coding 231-20 chr4 60501065 60501438 + 1.33333 NA Intergenic MER4CL34|LTR|ERV1 -421368 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 145.666 chr1 45633714 45633889 + 1.33333 NA intron (NM_021639, intron 9 of 12) intron (NM_021639, intron 9 of 12) -9747 NM_001190182 149483 Hs.18912 NM_152500 ENSG00000159588 CCDC17 - coiled-coil domain containing 17 protein-coding 133.5-37 chr2 216365864 216365986 + 1.33333 NA intron (NM_020814, intron 1 of 3) L2b|LINE|L2 6558 NM_020814 57574 Hs.170388 NM_020814 ENSG00000144583 MARCH4 MARCH-IV|RNF174 membrane associated ring-CH-type finger 4 protein-coding 288-2 chr11 105555553 105555949 + 1.33333 NA Intergenic MER21C|LTR|ERVL -54322 NM_001077244 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 180.166-4 chr6 50340284 50340470 + 1.33333 NA Intergenic L2|LINE|L2 -290448 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 364.833-2 chr2 17671927 17672379 + 1.33333 NA intron (NM_024624, intron 24 of 26) intron (NM_024624, intron 24 of 26) 81657 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 275.333-9 chr12 61387131 61387358 + 1.33333 NA Intergenic Intergenic 805595 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 260.667-13 chr20 37773474 37773798 + 1.33333 NA intron (NM_001281495, intron 8 of 16) intron (NM_001281495, intron 8 of 16) 79606 NM_030877 56259 Hs.472667 NM_030877 ENSG00000132792 CTNNBL1 C20orf33|NAP|P14L|PP8304|dJ633O20.1 catenin beta like 1 protein-coding 251.5-15 chr4 122050467 122050837 + 1.33333 NA Intergenic L3|LINE|CR1 -98592 NM_001130698 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 146.666-3 chr2 143453891 143454030 + 1.33333 NA intron (NM_018460, intron 8 of 13) intron (NM_018460, intron 8 of 13) 324541 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 272.333-2 chr11 100253888 100254133 + 1.33333 NA intron (NM_001243270, intron 15 of 23) intron (NM_001243270, intron 15 of 23) -433278 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 143-77 chr8 68309231 68309400 + 1.33333 NA intron (NR_038877, intron 1 of 2) LTR8A|LTR|ERV1 -21058 NM_001349478 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 239.333-23 chr8 66631733 66632049 + 1.33333 NA 3' UTR (NM_025054, exon 3 of 3) 3' UTR (NM_025054, exon 3 of 3) -18673 NM_001144755 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 206.833-21 chr5 25833718 25834222 + 1.33333 NA Intergenic L1PB4|LINE|L1 643017 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 316.333-2 chr1 175217179 175217512 + 1.33333 NA Intergenic Charlie4z|DNA|hAT-Charlie -24358 NM_001319230 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 416-3 chr4 66653592 66654165 + 1.33333 NA Intergenic Intergenic 377054 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 153-15 chr12 74227624 74227869 + 1.33333 NA intron (NR_038300, intron 3 of 6) Tigger3|DNA|TcMar-Tigger 64885 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 114.5-101 chrX 130930965 130931130 + 1.33333 NA Intergenic L1MD1|LINE|L1 -27730 NM_182314 10495 Hs.171458 NM_006375 ENSG00000165675 ENOX2 APK1|COVA1|tNOX ecto-NOX disulfide-thiol exchanger 2 protein-coding 297.333-10 chr7 42678596 42678914 + 1.33333 NA intron (NR_110833, intron 1 of 2) LTR85c|LTR|Gypsy? 27692 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 167.333-18 chr11 101689035 101689327 + 1.33333 NA Intergenic L2a|LINE|L2 -105174 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 206-11 chr15 54235416 54235729 + 1.33333 NA intron (NM_001080534, intron 4 of 30) intron (NM_001080534, intron 4 of 30) 222924 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 201.666-4 chr5 64354815 64355064 + 1.33333 NA intron (NM_001113561, intron 7 of 7) L1MB4|LINE|L1 -151076 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 257.833-10 chr5 23466862 23467272 + 1.33333 NA Intergenic LTR8B|LTR|ERV1 -40542 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 239.5-7 chr10 115473963 115474343 + 1.33333 NA intron (NM_207303, intron 24 of 28) L1MB1|LINE|L1 380788 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 216.833-5 chr12 5961461 5961783 + 1.33333 NA intron (NM_000552, intron 47 of 51) L1M5|LINE|L1 -15390 NM_001278597 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 285.833 chr1 85684969 85685810 + 1.33333 NA intron (NM_017953, intron 5 of 9) L1ME4a|LINE|L1 23044 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 136.5-89 chr8 69149446 69149556 + 1.33333 NA Intergenic Intergenic -45311 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 228.5-14 chr2 72029704 72030030 + 1.33333 NA Intergenic Intergenic 117995 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 178.5-26 chr14 54649666 54649802 + 1.33333 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 82122 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 126.666-3 chr8 108657122 108657267 + 1.33333 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 130400 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 198-24 chr18 5310975 5311255 + 1.33333 NA Intergenic Intergenic -14062 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 183.333-29 chr2 123055483 123055677 + 1.33333 NA Intergenic L1M4c|LINE|L1 17901 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 178.667-38 chr3 34958358 34958598 + 1.33333 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 435545 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 199.5-23 chr20 9061046 9061479 + 1.33333 NA Intergenic Intergenic -7792 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 222.5-5 chr12 90514716 90514891 + 1.33333 NA Intergenic Intergenic 221485 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 194-45 chr5 58056968 58057195 + 1.33333 NA Intergenic Intergenic 65260 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 140.667-72 chr5 175285535 175285693 + 1.33333 NA Intergenic Intergenic 158568 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 204-15 chr2 5872831 5873093 + 1.33333 NA Intergenic Intergenic -59725 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 266.333 chr1 114995419 114995720 + 1.33333 NA TTS (NR_104211) TTS (NR_104211) -34255 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 230.166-3 chr7 50977361 50977626 + 1.33333 NA Intergenic L1MB3|LINE|L1 -184040 NM_001371008 157.833-24 chr14 61758504 61758746 + 1.33333 NA Intergenic L1ME3F|LINE|L1 -3795 NM_003082 6617 Hs.179312 NM_003082 ENSG00000023608 SNAPC1 PTFgamma|SNAP43 small nuclear RNA activating complex polypeptide 1 protein-coding 184.166-2 chr3 151352802 151352962 + 1.33333 NA intron (NM_053002, intron 15 of 42) intron (NM_053002, intron 15 of 42) -12060 NM_176876 64805 Hs.591281 NM_022788 ENSG00000169313 P2RY12 ADPG-R|BDPLT8|HORK3|P2T(AC)|P2Y(12)R|P2Y(AC)|P2Y(ADP)|P2Y(cyc)|P2Y12|SP1999 purinergic receptor P2Y12 protein-coding 501.334 chr2 189966388 189966808 + 1.33333 NA Intergenic L1MD2|LINE|L1 96131 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 152.833-73 chr8 141927708 141927843 + 1.33333 NA Intergenic Intergenic -141462 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 272.333 chr1 64554738 64554989 + 1.33333 NA intron (NM_020925, intron 2 of 26) MER3|DNA|hAT-Charlie -24984 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 244-19 chr5 174789443 174789780 + 1.33333 NA Intergenic MER58B|DNA|hAT-Charlie 37877 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 251.667-20 chr5 153544031 153544616 + 1.33333 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 52151 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 243-22 chr3 29933071 29933414 + 1.33333 NA intron (NR_046556, intron 1 of 2) intron (NR_046556, intron 1 of 2) 914 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 179.333-9 chr11 62215868 62216130 + 1.33333 NA Intergenic LTR5B|LTR|ERVK 7326 NM_002407 4246 Hs.97644 NM_002407 ENSG00000124939 SCGB2A1 LPHC|LPNC|MGB2|UGB3 secretoglobin family 2A member 1 protein-coding 177-58 chr5 161932832 161933020 + 1.33333 NA intron (NR_126372, intron 1 of 2) intron (NR_126372, intron 1 of 2) 68270 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 176-24 chr3 9455497 9455670 + 1.33333 NA intron (NM_001080517, intron 17 of 22) intron (NM_001080517, intron 17 of 22) 57883 NM_001080517 55209 Hs.288164 NM_018187 ENSG00000168137 SETD5 - SET domain containing 5 protein-coding 245.333-15 chr5 81496354 81496592 + 1.33333 NA intron (NM_001256734, intron 4 of 15) AluSx|SINE|Alu -102339 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 451 chr14 35381447 35381926 + 1.33333 NA Intergenic Intergenic 23068 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA EDAID2|IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 268.333-16 chr8 105834441 105834873 + 1.33333 NA intron (NR_125796, intron 2 of 7) intron (NR_125796, intron 2 of 7) 225846 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 212-24 chr3 111260988 111261221 + 1.33333 NA Intergenic L1MB2|LINE|L1 189288 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 199-11 chr18 70557826 70558025 + 1.33333 NA Intergenic Intergenic 93029 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 370-5 chr7 62575381 62575794 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr 728469 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 408.666-4 chr3 35985518 35986006 + 1.33333 NA Intergenic Intergenic 241286 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 329-7 chr8 107935006 107935421 + 1.33333 NA intron (NM_001282863, intron 4 of 4) MER11B|LTR|ERVK 146726 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 314-8 chr2 161301151 161301670 + 1.33333 NA Intergenic Intergenic -7015 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 188.333-46 chr5 28335221 28335497 + 1.33333 NA Intergenic L1PB4|LINE|L1 -47694 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 159.5-18 chr15 72032296 72032454 + 1.33333 NA intron (NM_006901, intron 3 of 41) intron (NM_006901, intron 3 of 41) -81883 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 157.333-76 chr9 76443032 76443198 + 1.33333 NA intron (NM_001097634, intron 1 of 2) AluSx|SINE|Alu 1449 NM_001097634 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1 protein-coding 232.667-7 chr12 68964377 68964855 + 1.33333 NA Intergenic LTR8B|LTR|ERV1 -1376 NM_001874 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 142.833-78 chrX 27570818 27571114 + 1.33333 NA Intergenic Intergenic -19378 NR_148432 347442 Hs.720885 NM_001136533 ENSG00000189186 DCAF8L2 WDR42C DDB1 and CUL4 associated factor 8 like 2 protein-coding 173.333-74 chr9 78333483 78333679 + 1.33333 NA Intergenic Intergenic 36456 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 296.5-4 chr16 51738099 51738595 + 1.33333 NA Intergenic MIR3|SINE|MIR -24172 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 326.666 chr14 36720883 36721150 + 1.33333 NA intron (NM_001171170, intron 6 of 10) intron (NM_001171170, intron 6 of 10) 63448 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 368.333-2 chr10 33547317 33547682 + 1.33333 NA Intergenic Intergenic -212594 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 373.666-2 chr6 106573676 106574060 + 1.33333 NA intron (NM_032730, intron 8 of 8) intron (NM_032730, intron 8 of 8) 55630 NM_032730 84816 Hs.155839 NM_032730 ENSG00000130347 RTN4IP1 NIMP|OPA10 reticulon 4 interacting protein 1 protein-coding 306.666-2 chr7 54754556 54754830 + 1.33333 NA intron (NM_014302, intron 3 of 3) intron (NM_014302, intron 3 of 3) 4518 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 150-58 chr4 30915393 30915572 + 1.33333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 195113 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 124.666 chr1 17649701 17649830 + 1.33333 NA intron (NR_137287, intron 23 of 29) L2c|LINE|L2 31452 NM_001319838 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 209.333-11 chr15 97210065 97210313 + 1.33333 NA Intergenic Intergenic 311622 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 188.333-11 chr12 21842901 21843099 + 1.33333 NA intron (NM_005691, intron 26 of 37) intron (NM_005691, intron 26 of 37) -68294 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 206.833-17 chr3 109895478 109895656 + 1.33333 NA Intergenic Intergenic 292739 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 204.5-36 chr6 90495204 90495524 + 1.33333 NA Intergenic Intergenic 91708 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 276.333-13 chr22 31225245 31225520 + 1.33333 NA intron (NM_005569, intron 1 of 15) L3|LINE|CR1 13084 NM_005569 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 275 chr10 43231927 43232223 + 1.33333 NA intron (NM_145313, intron 1 of 12) intron (NM_145313, intron 1 of 12) -2336 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 263-8 chr16 83038180 83038544 + 1.33333 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -48064 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 302-6 chr1 180887614 180888008 + 1.33333 NA non-coding (NR_137330, exon 13 of 13) non-coding (NR_137330, exon 13 of 13) -25086 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 143.5-72 chr6 77407700 77407967 + 1.33333 NA Intergenic L2c|LINE|L2 56189 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 338.333-9 chr7 45313323 45313707 + 1.33333 NA Intergenic L1MDa|LINE|L1 155724 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 191.666 chr2 129566031 129566473 + 1.33333 NA Intergenic Intergenic -292361 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 347.166 chr11 80369862 80370277 + 1.33333 NA Intergenic L1MC4a|LINE|L1 392734 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 214.666 chr11 27227023 27227238 + 1.33333 NA Intergenic MIR|SINE|MIR -7017 NR_125766 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 163.166 chr2 45834708 45834986 + 1.33333 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 183172 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 195-12 chr16 73389325 73389521 + 1.33333 NA intron (NR_038234, intron 1 of 2) intron (NR_038234, intron 1 of 2) 2618 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 190.666-3 chr4 41132190 41132418 + 1.33333 NA intron (NM_173075, intron 2 of 16) intron (NM_173075, intron 2 of 16) 82238 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 282.999-2 chr2 75529870 75530245 + 1.33333 NA intron (NM_001369524, intron 2 of 5) L1PB1|LINE|L1 5989 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 183.5-37 chr20 31401599 31401770 + 1.33333 NA Intergenic L2a|LINE|L2 4531 NM_001011878 245934 Hs.272294 NM_001011878 ENSG00000204548 DEFB121 DEFB21|ESC42RELC defensin beta 121 protein-coding 148.5-3 chr1 150435039 150435257 + 1.33333 NA intron (NM_015203, intron 2 of 10) Tigger1|DNA|TcMar-Tigger -52271 NM_001271896 80222 Hs.288974 NM_025150 ENSG00000143374 TARS2 COXPD21|TARSL1|thrRS threonyl-tRNA synthetase 2, mitochondrial protein-coding 198 chr1 2217822 2218077 + 1.33333 NA Intergenic AluY|SINE|Alu -5229 NM_001282670 199990 Hs.107101 NM_182533 ENSG00000162585 FAAP20 C1orf86|FP7162 FA core complex associated protein 20 protein-coding 238.667-13 chr17 66089284 66089884 + 1.33333 NA intron (NM_001302891, intron 6 of 24) L1MA8|LINE|L1 102308 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 398-2 chr17 53422224 53422822 + 1.33333 NA Intergenic Intergenic -400404 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 218.667-16 chr18 59173737 59174000 + 1.33333 NA Intergenic L1MEc|LINE|L1 33984 NM_001307941 90701 Hs.45107 NM_033280 ENSG00000166562 SEC11C SEC11L3|SPC21|SPCS4C SEC11 homolog C, signal peptidase complex subunit protein-coding 215.001-2 chr3 187664941 187665152 + 1.33333 NA Intergenic Intergenic 5348 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 184-58 chr7 34255201 34255421 + 1.33333 NA Intergenic MLT1C|LTR|ERVL-MaLR 349772 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 296-12 chr20 56903486 56903880 + 1.33333 NA Intergenic Intergenic 274377 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 343.999-2 chr14 58174714 58175258 + 1.33333 NA Intergenic Intergenic -22773 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 329.333 chr10 59791224 59791564 + 1.33333 NA 3' UTR (NM_005436, exon 9 of 9) 3' UTR (NM_005436, exon 9 of 9) -37939 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 294-5 chr2 112759179 112759593 + 1.33333 NA intron (NR_130712, intron 3 of 9) intron (NR_130712, intron 3 of 9) 5223 NR_130712 150468 Hs.434250 NM_152515 ENSG00000169607 CKAP2L - cytoskeleton associated protein 2 like protein-coding 191.5-50 chr7 93654137 93654387 + 1.33333 NA Intergenic L1MEf|LINE|L1 -62666 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 256.666-3 chr22 19381826 19382085 + 1.33333 NA intron (NM_003325, intron 13 of 24) L1ME4b|LINE|L1 49778 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 355.667-3 chr19 41041193 41041790 + 1.33333 NA Intergenic L1MB8|LINE|L1 -46960 NM_000766 1553 Hs.567252 NM_000766 ENSG00000197838 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450 family 2 subfamily A member 13 protein-coding 328.666 chr11 105267761 105268011 + 1.33333 NA Intergenic Intergenic -128117 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 134.667-89 chr5 144196589 144196755 + 1.33333 NA intron (NM_020768, intron 2 of 3) intron (NM_020768, intron 2 of 3) -8719 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 226.833-12 chr2 161683359 161683564 + 1.33333 NA intron (NM_001354451, intron 1 of 25) intron (NM_001354451, intron 1 of 25) 59045 NM_001354445 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 215.833-17 chr4 102055140 102055628 + 1.33333 NA intron (NM_017935, intron 11 of 16) intron (NM_017935, intron 11 of 16) 241542 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 154-75 chr7 137565782 137565985 + 1.33333 NA intron (NM_001321710, intron 19 of 32) intron (NM_001321710, intron 19 of 32) -222150 NM_002825 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 208.166-3 chr6 132457069 132457308 + 1.33333 NA TTS (NM_001326579) TTS (NM_001326579) 55595 NM_001326578 8417 Hs.593148 NM_003569 ENSG00000079950 STX7 - syntaxin 7 protein-coding 399.667-4 chr8 133896606 133897146 + 1.33333 NA intron (NR_125424, intron 1 of 3) intron (NR_125424, intron 1 of 3) 10380 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 258.333-27 chr5 25300339 25300608 + 1.33333 NA intron (NR_136209, intron 3 of 3) L1MC1|LINE|L1 109520 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 509.5 chr21 28821246 28822075 + 1.33333 NA Intergenic Intergenic 63707 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 127.333-99 chr6 139448363 139448640 + 1.33333 NA Intergenic Intergenic 26095 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 133-83 chr6 145523575 145523775 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger 163202 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 296.666-4 chr4 91191107 91191493 + 1.33333 NA intron (NM_001145065, intron 10 of 10) L2|LINE|L2 956269 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 157.333-3 chr1 97537264 97537480 + 1.33333 NA intron (NM_000110, intron 12 of 22) intron (NM_000110, intron 12 of 22) -259549 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 198-12 chr10 65276837 65277117 + 1.33333 NA Intergenic LTR51|LTR|ERV1 -294448 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 563.166 chr2 169805411 169806461 + 1.33333 NA intron (NM_003142, intron 4 of 11) MIRb|SINE|MIR 6634 NM_001294145 6741 Hs.632535 NM_003142 ENSG00000138385 SSB LARP3|La|La/SSB small RNA binding exonuclease protection factor La protein-coding 325.667-11 chr9 29027001 29027437 + 1.33333 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -138264 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 264.999 chr3 179981759 179982043 + 1.33333 NA intron (NM_016559, intron 1 of 14) intron (NM_016559, intron 1 of 14) -7676 NM_001349386 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 211.333-16 chr16 6987915 6988153 + 1.33333 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 214225 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 129-35 chr18 33949947 33950107 + 1.33333 NA intron (NM_001198546, intron 7 of 9) intron (NM_001198546, intron 7 of 9) 98585 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 288-4 chr12 32162259 32162656 + 1.33333 NA intron (NR_148725, intron 1 of 9) intron (NR_148725, intron 1 of 9) 55610 NR_148725 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 191.666-2 chr5 39882082 39882531 + 1.33333 NA Intergenic Intergenic -169985 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 276.666-5 chr3 1832745 1833044 + 1.33333 NA Intergenic Intergenic -265909 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 240.667-6 chr10 56841600 56841957 + 1.33333 NA Intergenic L1MEg|LINE|L1 462781 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 131.5-74 chr7 49875643 49875908 + 1.33333 NA intron (NR_136188, intron 2 of 3) intron (NR_136188, intron 2 of 3) 100442 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 479.999 chr7 115461884 115462323 + 1.33333 NA Intergenic Intergenic 119338 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 222-5 chr11 14211913 14212155 + 1.33333 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 146451 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 154.833-64 chrX 142035997 142036128 + 1.33333 NA Intergenic Intergenic 132168 NM_005462 9947 Hs.132194 NM_005462 ENSG00000155495 MAGEC1 CT7|CT7.1 MAGE family member C1 protein-coding 149.166 chr17 62309315 62309489 + 1.33333 NA Intergenic L2c|LINE|L2 -33747 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 195.666-4 chr2 182083181 182083408 + 1.33333 NA intron (NM_001261425, intron 4 of 5) L1PB3|LINE|L1 97441 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 198.667-47 chr5 56166512 56166767 + 1.33333 NA intron (NM_024669, intron 5 of 11) L4_A_Mam|LINE|RTE-X 66691 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 325.333-9 chr8 49027494 49027935 + 1.33333 NA Intergenic L1ME4b|LINE|L1 -26622 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 256.833-2 chr10 82456242 82456707 + 1.33333 NA intron (NR_163253, intron 3 of 10) Tigger3b|DNA|TcMar-Tigger -223554 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 280.666-4 chr20 11269757 11270065 + 1.33333 NA intron (NR_038972, intron 1 of 1) intron (NR_038972, intron 1 of 1) 3472 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 402.666-2 chr7 10391840 10392276 + 1.33333 NA Intergenic Intergenic -310618 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 124.333-19 chr12 40398825 40398932 + 1.33333 NA intron (NM_173600, intron 2 of 173) intron (NM_173600, intron 2 of 173) 5484 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 204.666-3 chr6 148375181 148375344 + 1.33333 NA intron (NM_001346506, intron 1 of 20) AluJb|SINE|Alu 32424 NM_001346506 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 336.5-2 chr11 41299001 41299435 + 1.33333 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 160418 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 271.666-2 chr16 65430121 65430389 + 1.33333 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 146045 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 236.666-2 chr13 21694725 21694932 + 1.33333 NA intron (NM_002010, intron 2 of 2) intron (NM_002010, intron 2 of 2) 23755 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 156-80 chr7 47029104 47029280 + 1.33333 NA Intergenic Intergenic -332070 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 190.5-48 chr7 42027497 42027773 + 1.33333 NA intron (NM_000168, intron 7 of 14) intron (NM_000168, intron 7 of 14) 209574 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 194.666-7 chr20 43111965 43112175 + 1.33333 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 77836 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 328.667-5 chr17 59519369 59519782 + 1.33333 NA intron (NR_110813, intron 1 of 2) intron (NR_110813, intron 1 of 2) 7282 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 424.499 chr3 126224476 126225045 + 1.33333 NA Intergenic MER47A|DNA|TcMar-Tigger -43574 NM_001270364 10840 Hs.434435 NM_012190 ENSG00000144908 ALDH1L1 10-FTHFDH|10-fTHF|FDH|FTHFD aldehyde dehydrogenase 1 family member L1 protein-coding 388.834-2 chr4 53225938 53226600 + 1.33333 NA intron (NM_152540, intron 4 of 8) intron (NM_152540, intron 4 of 8) 139792 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 242.666-5 chr4 62697351 62697607 + 1.33333 NA Intergenic MIRc|SINE|MIR -535714 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 134.667-24 chr14 39078617 39078870 + 1.33333 NA intron (NM_006364, intron 7 of 19) L1MEd|LINE|L1 -24397 NR_146545 105370458 NR_146545 ENSG00000258651 SEC23A-AS1 - SEC23A antisense RNA 1 ncRNA 307-3 chr14 71154290 71154594 + 1.33333 NA Intergenic L1ME3G|LINE|L1 -166034 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 300.5-6 chr14 64691831 64692218 + 1.33333 NA Intergenic AluSx3|SINE|Alu -12400 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 124-84 chr6 160726551 160726715 + 1.33333 NA intron (NM_000301, intron 10 of 18) Charlie1|DNA|hAT-Charlie 24440 NM_000301 5340 Hs.143436 NM_000301 ENSG00000122194 PLG - plasminogen protein-coding 304.5-7 chr2 193463013 193463508 + 1.33333 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 713415 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 155.5-34 chr20 14200999 14201197 + 1.33333 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 136514 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 247.833-13 chr8 127076823 127077063 + 1.33333 NA intron (NR_119373, intron 2 of 3) intron (NR_119373, intron 2 of 3) -2931 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 255.5-14 chr3 23833205 23833460 + 1.33333 NA intron (NM_003341, intron 3 of 5) intron (NM_003341, intron 3 of 5) 22878 NM_001202476 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 267.333-21 chr3 194206580 194206827 + 1.33333 NA promoter-TSS (NR_125404) promoter-TSS (NR_125404) -396 NR_125404 100505920 Hs.436654 NR_125403 ENSG00000225742 LINC02036 - long intergenic non-protein coding RNA 2036 ncRNA 216.833-2 chr10 90058365 90058607 + 1.33333 NA Intergenic MIRb|SINE|MIR -101113 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 305.666-4 chr6 55201745 55202080 + 1.33333 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) 95452 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 222.834-6 chr5 57526733 57526962 + 1.33333 NA Intergenic Intergenic -43495 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 198.333-46 chr8 118062788 118063030 + 1.33333 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 48910 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 279.666-6 chr9 111512743 111513026 + 1.33333 NA Intergenic Intergenic -12295 NM_133464 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 174.166 chr1 185609533 185609714 + 1.33333 NA intron (NR_110793, intron 2 of 3) intron (NR_110793, intron 2 of 3) 18865 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 225.667-5 chr11 130529949 130530281 + 1.33333 NA Intergenic AluJb|SINE|Alu 81141 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 322.334-3 chr15 61958861 61959292 + 1.33333 NA intron (NM_001018088, intron 36 of 81) intron (NM_001018088, intron 36 of 81) 101371 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 250.666-7 chr8 14187866 14188172 + 1.33333 NA intron (NM_139167, intron 4 of 7) L1M4b|LINE|L1 558329 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 127.5-66 chr7 108492521 108492696 + 1.33333 NA intron (NM_001256010, intron 6 of 9) intron (NM_001256010, intron 6 of 9) 33527 NM_001256007 50640 Hs.617340 NM_015723 ENSG00000135241 PNPLA8 IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma patatin like phospholipase domain containing 8 protein-coding 206.666-4 chr2 48381936 48382151 + 1.33333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -58723 NM_001135629 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 275.833-6 chr4 65120335 65120635 + 1.33333 NA Intergenic L1MB2|LINE|L1 -115985 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 124.833-7 chr10 6673766 6673923 + 1.33333 NA Intergenic Intergenic 38774 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 212.333-11 chr14 59534913 59535236 + 1.33333 NA intron (NM_001164399, intron 13 of 19) ERVL-E-int|LTR|ERVL 41738 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 302.166 chr8 95332378 95332916 + 1.33333 NA intron (NR_038208, intron 2 of 3) MIRb|SINE|MIR -63446 NM_001363260 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 282.333-7 chr17 56638241 56638542 + 1.33333 NA Intergenic MIRb|SINE|MIR 44692 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 177.333-11 chr10 58126071 58126349 + 1.33333 NA Intergenic L1ME2z|LINE|L1 141684 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 236.333-7 chr12 76979915 76980106 + 1.33333 NA Intergenic L1MA9|LINE|L1 85559 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 235.333-25 chr8 58839438 58839777 + 1.33333 NA intron (NM_014729, intron 4 of 8) MIR3|SINE|MIR -179754 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 328-2 chr11 97911657 97912033 + 1.33333 NA Intergenic Intergenic -1109104 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 137.834-3 chr5 42753644 42753847 + 1.33333 NA Intergenic L4_B_Mam|LINE|RTE-X -3073 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 172.333-38 chr2 103606736 103606868 + 1.33333 NA Intergenic L1ME2|LINE|L1 -622373 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 145.833-28 chr16 4542364 4542494 + 1.33333 NA Intergenic MER33|DNA|hAT-Charlie -3656 NM_001199056 29965 Hs.654653 NM_013399 ENSG00000089486 CDIP1 C16orf5|CDIP|I1|LITAFL cell death inducing p53 target 1 protein-coding 196.333-14 chr17 30949292 30949559 + 1.33333 NA intron (NR_144488, intron 6 of 9) intron (NR_144488, intron 6 of 9) -21614 NM_197939 84282 Hs.29874 NM_032322 ENSG00000181481 RNF135 L13|MMFD|REUL|Riplet ring finger protein 135 protein-coding 214.5-15 chr17 72592834 72593329 + 1.33333 NA promoter-TSS (NR_152516) promoter-TSS (NR_152516) -277 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 125.333-27 chr11 96858540 96858731 + 1.33333 NA Intergenic L1PA13|LINE|L1 350210 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 131.333-28 chr14 46176148 46176318 + 1.33333 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 112074 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 285.833-5 chr3 155487775 155488087 + 1.33333 NA TTS (NR_146955) TTS (NR_146955) 2128 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 249.5-17 chr20 45023346 45023883 + 1.33333 NA intron (NM_001352385, intron 9 of 11) intron (NM_001352385, intron 9 of 11) 57102 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 143.333-45 chr20 31702837 31703042 + 1.33333 NA intron (NR_134257, intron 1 of 2) AluSg|SINE|Alu -18568 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 219-15 chr2 118395880 118396153 + 1.33333 NA Intergenic Intergenic 206950 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 205.333-26 chr2 103895107 103895404 + 1.33333 NA Intergenic Intergenic 513077 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 178.166 chr11 22568323 22568504 + 1.33333 NA Intergenic L1P4b|LINE|L1 57428 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF FA complementation group F protein-coding 276-2 chr1 86547728 86548098 + 1.33333 NA intron (NM_012128, intron 1 of 13) L1MA5|LINE|L1 835 NM_012128 22802 Hs.567422 NM_012128 ENSG00000016602 CLCA4 CaCC|CaCC2 chloride channel accessory 4 protein-coding 308 chr1 98348780 98349170 + 1.33333 NA Intergenic L2a|LINE|L2 138264 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 221.333-11 chr15 56134464 56134678 + 1.33333 NA intron (NM_001370561, intron 7 of 11) intron (NM_001370561, intron 7 of 11) 55361 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 198-15 chr12 26693610 26693794 + 1.33333 NA intron (NM_002223, intron 10 of 56) MER2B|DNA|TcMar-Tigger 139492 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 256.999 chr12 20886616 20886857 + 1.33333 NA intron (NM_019844, intron 13 of 15) L1PB4|LINE|L1 64188 NM_001349920 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 273.666-2 chr14 45612942 45613208 + 1.33333 NA Intergenic Intergenic 102527 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 210.5-50 chr8 143906986 143907183 + 1.33333 NA Intergenic L1M4|LINE|L1 -28620 NM_031308 83481 Hs.200412 NM_031308 ENSG00000261150 EPPK1 EPIPL|EPIPL1 epiplakin 1 protein-coding 190-58 chr6 132606296 132606505 + 1.33333 NA Intergenic Intergenic 2902 NR_028511 9288 Hs.730091 NR_028511 ENSG00000179073 TAAR3P GPR57|GPR58|TAAR2|TAAR3 trace amine associated receptor 3, pseudogene pseudo 346.667-7 chr8 110227699 110228141 + 1.33333 NA Intergenic LOR1a|LTR|ERV1 -252149 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 181.666-2 chr13 77405429 77405623 + 1.33333 NA Intergenic Intergenic -78432 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|PHR1|Phr MYC binding protein 2 protein-coding 268.499 chr8 82173780 82174041 + 1.33333 NA Intergenic Intergenic -331624 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 141-12 chr10 99408877 99409095 + 1.33333 NA intron (NM_002079, intron 2 of 8) L1MC5|LINE|L1 21638 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 310.333-10 chr5 101142804 101143105 + 1.33333 NA Intergenic Intergenic -239672 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 186.667-13 chr12 12845479 12846048 + 1.33333 NA Intergenic AluSx|SINE|Alu -29714 NR_003932 387841 Hs.631728 NR_003932 ENSG00000234498 RPL13AP20 RPL13A_9_1211 ribosomal protein L13a pseudogene 20 pseudo 432.166 chr17 70643719 70644219 + 1.33333 NA Intergenic Intergenic 474434 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 332.666 chr3 76743388 76743689 + 1.33333 NA Intergenic Intergenic -296561 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 293.667-6 chr2 162970636 162971036 + 1.33333 NA Intergenic Intergenic -132069 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 139.667-97 chr9 75664605 75664834 + 1.33333 NA Intergenic Intergenic -225925 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 223.333-30 chr5 22238871 22239116 + 1.33333 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -25143 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 279.333-16 chr7 50343347 50343669 + 1.33333 NA intron (NM_001291840, intron 2 of 2) intron (NM_001291840, intron 2 of 2) 24460 NM_001291842 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 245.833-5 chr17 47203124 47203533 + 1.33333 NA Intergenic L1MEh|LINE|L1 -5734 NM_001002841 4635 Hs.463300 NM_002476 ENSG00000198336 MYL4 ALC1|AMLC|GT1|PRO1957 myosin light chain 4 protein-coding 129.5-6 chr1 110949805 110949988 + 1.33333 NA exon (NM_001006945, exon 2 of 3) exon (NM_001006945, exon 2 of 3) 14026 NM_018372 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 285.667-2 chr2 199256602 199256952 + 1.33333 NA Intergenic Intergenic 201162 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 161.333-66 chr6 61903320 61903501 + 1.33333 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 329280 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 290.166-3 chr8 37749018 37749301 + 1.33333 NA intron (NM_007175, intron 6 of 11) intron (NM_007175, intron 6 of 11) -1113 NR_003671 728024 Hs.647135 NR_003671 LOC728024 - chromosome X open reading frame 56 pseudogene pseudo 142-17 chr10 56185654 56185815 + 1.33333 NA Intergenic L1M5|LINE|L1 175525 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 146.667-92 chr8 85280149 85280367 + 1.33333 NA intron (NM_198584, intron 6 of 6) AluSc|SINE|Alu 34800 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 405.999 chr9 69105015 69105441 + 1.33333 NA Intergenic Intergenic -16036 NM_001170414 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 284.167-10 chr2 66692755 66692993 + 1.33333 NA intron (NR_110156, intron 5 of 5) intron (NR_110156, intron 5 of 5) 10353 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 153.667-37 chr2 51536552 51536758 + 1.33333 NA intron (NR_135237, intron 5 of 10) L1MC3|LINE|L1 504054 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 194-56 chr8 76784898 76785063 + 1.33333 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -101705 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 188.667-20 chr14 73879579 73879825 + 1.33333 NA intron (NM_001146154, intron 6 of 9) intron (NM_001146154, intron 6 of 9) -7157 NR_040251 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 260-23 chrX 152565527 152565889 + 1.33333 NA Intergenic Intergenic -72187 NM_018558 55879 Hs.283081 NM_018558 ENSG00000268089 GABRQ THETA gamma-aminobutyric acid type A receptor theta subunit protein-coding 273.5-9 chr13 44253615 44254189 + 1.33333 NA Intergenic Intergenic -57702 NR_107046 102465876 NR_107046 ENSG00000276319 MIR8079 hsa-mir-8079 microRNA 8079 ncRNA 279.166-2 chr4 100734196 100734688 + 1.33333 NA Intergenic L1M7|LINE|L1 -59329 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 244.666 chr10 48379337 48379596 + 1.33333 NA intron (NM_001323302, intron 3 of 13) LTR49-int|LTR|ERV1 -22146 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 229.167-28 chr5 23308089 23308450 + 1.33333 NA Intergenic L1MC3|LINE|L1 -199340 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 243.667-13 chr15 60211583 60211869 + 1.33333 NA Intergenic Chap1_Mam|DNA|hAT-Charlie 186260 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 286.666 chr2 192206026 192206500 + 1.33333 NA Intergenic Intergenic -11330 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 148.166-4 chr4 65653865 65654032 + 1.33333 NA intron (NM_001281767, intron 1 of 16) intron (NM_001281767, intron 1 of 16) 15540 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 263.666 chr10 54376760 54377169 + 1.33333 NA intron (NM_001354411, intron 4 of 34) L1ME3G|LINE|L1 -109266 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 294.334-3 chr2 16497286 16497730 + 1.33333 NA Intergenic Intergenic 168326 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 246.666-5 chr4 30473224 30473558 + 1.33333 NA Intergenic Intergenic -246978 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 143.333-57 chr3 60922177 60922383 + 1.33333 NA intron (NR_148922, intron 3 of 3) intron (NR_148922, intron 3 of 3) -304410 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 195.333-28 chr20 2766551 2766727 + 1.33333 NA Intergenic L1M5|LINE|L1 33988 NM_001184699 56265 Hs.659346 NM_019609 ENSG00000088882 CPXM1 CPX1|CPXM carboxypeptidase X, M14 family member 1 protein-coding 143.666-2 chr12 18266181 18266385 + 1.33333 NA intron (NM_001288774, intron 1 of 32) intron (NM_001288774, intron 1 of 32) 4743 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 163-51 chr6 15832829 15832959 + 1.33333 NA Intergenic Intergenic -169836 NM_001271668 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 386.668-3 chr4 162363038 162363432 + 1.33333 NA Intergenic Intergenic -199201 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 307.999 chr4 16932219 16932507 + 1.33333 NA Intergenic L2b|LINE|L2 -33554 NM_001304435 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 226.833-17 chr5 5741009 5741282 + 1.33333 NA Intergenic MERX|DNA|TcMar-Tigger 318468 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 260.5-2 chr11 104007274 104007620 + 1.33333 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) -29193 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 151-34 chr2 32771009 32771233 + 1.33333 NA intron (NM_017735, intron 13 of 19) MIRb|SINE|MIR -54312 NR_027098 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 286-6 chr2 124545120 124545518 + 1.33333 NA intron (NM_130773, intron 10 of 23) intron (NM_130773, intron 10 of 23) 520032 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 194.834-6 chr3 41836764 41837020 + 1.33333 NA intron (NR_136342, intron 16 of 34) intron (NR_136342, intron 16 of 34) 125211 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 190-48 chr4 104264531 104264768 + 1.33333 NA Intergenic Intergenic -226316 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 249.333-3 chr11 129456674 129456897 + 1.33333 NA Intergenic AluSz|SINE|Alu 80937 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 196.167-10 chr12 73845721 73845991 + 1.33333 NA Intergenic AluSz|SINE|Alu 446775 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 256-9 chr3 29775396 29775754 + 1.33333 NA intron (NM_001003792, intron 6 of 13) intron (NM_001003792, intron 6 of 13) 158581 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 333-3 chr18 7251934 7252355 + 1.33333 NA Intergenic L1MEd|LINE|L1 21040 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 119.667-64 chr3 80331933 80332190 + 1.33333 NA Intergenic L1MC3|LINE|L1 -432836 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 281-12 chr2 99050540 99051216 + 1.33333 NA intron (NR_146001, intron 15 of 18) Tigger3a|DNA|TcMar-Tigger 90302 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 471.5-3 chr5 23713715 23714599 + 1.33333 NA Intergenic L1PA16|LINE|L1 206502 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 141.5-57 chr3 1302332 1302448 + 1.33333 NA intron (NM_001349359, intron 6 of 20) intron (NM_001349359, intron 6 of 20) 209366 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 234.666 chr19 8144236 8144447 + 1.33333 NA intron (NM_032447, intron 6 of 63) AluSz6|SINE|Alu 4528 NM_001321431 84467 Hs.370362 NM_032447 ENSG00000142449 FBN3 - fibrillin 3 protein-coding 343.5-3 chr15 23917055 23917834 + 1.33333 NA Intergenic AluJb|SINE|Alu -57703 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 179-13 chr14 69032007 69032252 + 1.33333 NA Intergenic L1ME1|LINE|L1 52447 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 420.167 chr3 60009924 60010396 + 1.33333 NA intron (NM_001320901, intron 5 of 6) intron (NM_001320901, intron 5 of 6) 70749 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 122.333-23 chr11 114309925 114310093 + 1.33333 NA intron (NM_006169, intron 2 of 2) L1MB7|LINE|L1 14196 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 147.333-59 chr3 179375187 179375424 + 1.33333 NA exon (NM_033540, exon 10 of 18) exon (NM_033540, exon 10 of 18) 27596 NM_033540 55669 Hs.478383 NM_017927 ENSG00000171109 MFN1 hfzo1|hfzo2 mitofusin 1 protein-coding 277.667-3 chr10 32694154 32694675 + 1.33333 NA intron (NM_001321115, intron 24 of 43) MER6|DNA|TcMar-Tigger 207058 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 160.667-80 chr9 27471568 27471756 + 1.33333 NA intron (NM_024761, intron 1 of 3) MIR|SINE|MIR -52652 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 221-33 chr8 54866653 54866913 + 1.33333 NA Intergenic Intergenic -235245 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 188.833-42 chr9 33091757 33091924 + 1.33333 NA Intergenic L1MEg|LINE|L1 -15166 NM_018225 55234 Hs.655351 NM_018225 ENSG00000122692 SMU1 BWD|SMU-1|fSAP57 SMU1 DNA replication regulator and spliceosomal factor protein-coding 146.666 chr1 85942408 85942551 + 1.33333 NA intron (NM_152890, intron 24 of 59) intron (NM_152890, intron 24 of 59) 213992 NM_001349955 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 226.5-25 chr5 35167966 35168282 + 1.33333 NA intron (NM_000949, intron 1 of 9) L1MEg|LINE|L1 -50002 NM_001204317 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 131.333-59 chr2 227449443 227449577 + 1.33333 NA Intergenic Intergenic -22622 NR_049888 100847081 NR_049888 ENSG00000284092 MIR5703 mir-5703 microRNA 5703 ncRNA 232-20 chr3 164414218 164414473 + 1.33333 NA Intergenic L1PA16|LINE|L1 -242789 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 292.666 chr18 560737 561045 + 1.33333 NA Intergenic L1ME3D|LINE|L1 -19489 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 371.333-4 chr7 23250843 23251243 + 1.33333 NA intron (NM_001005340, intron 1 of 10) intron (NM_001005340, intron 1 of 10) 4268 NM_001005340 10457 Hs.190495 NM_002510 ENSG00000136235 GPNMB HGFIN|NMB|PLCA3 glycoprotein nmb protein-coding 169.667-5 chr10 31861746 31862006 + 1.33333 NA intron (NM_001270696, intron 3 of 17) intron (NM_001270696, intron 3 of 17) 47050 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 181.166 chr2 237035873 237036041 + 1.33333 NA Intergenic Intergenic 20210 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 197.334 chr11 20724239 20724535 + 1.33333 NA intron (NM_201551, intron 2 of 18) THE1D-int|LTR|ERVL-MaLR 54801 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 160.666-6 chr9 74915761 74916108 + 1.33333 NA Intergenic L1MA4|LINE|L1 -28013 NM_017662 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 243-21 chr3 5781401 5781804 + 1.33333 NA Intergenic L1MC4|LINE|L1 -531347 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 272-9 chr4 34289910 34290189 + 1.33333 NA Intergenic Intergenic -20302 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 184.333-4 chr10 58126415 58126587 + 1.33333 NA Intergenic L1ME2z|LINE|L1 141393 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 257.333-29 chr9 33984924 33985176 + 1.33333 NA intron (NM_001370059, intron 6 of 28) L1MA4A|LINE|L1 -32196 NR_003685 100113379 NR_003685 ENSG00000238886 SNORD121A - small nucleolar RNA, C/D box 121A snoRNA 151-68 chr7 45525224 45525372 + 1.33333 NA Intergenic MLT1O|LTR|ERVL-MaLR -48842 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 135.833-63 chr6 69817839 69817959 + 1.33333 NA Intergenic Charlie29a|DNA|hAT-Charlie -20889 NM_018368 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 366.501-2 chr8 125080595 125081375 + 1.33333 NA intron (NM_014846, intron 5 of 28) intron (NM_014846, intron 5 of 28) 10807 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 150.166 chr1 43589037 43589152 + 1.33333 NA intron (NM_001329137, intron 10 of 34) intron (NM_001329137, intron 10 of 34) 58211 NM_002840 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 339.666 chr3 26655229 26655586 + 1.33333 NA intron (NM_001317810, intron 2 of 2) intron (NM_001317810, intron 2 of 2) 30740 NM_001317810 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 328-8 chr2 240221329 240221627 + 1.33333 NA Intergenic L1ME2z|LINE|L1 -80820 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 323.833 chr2 106625816 106626531 + 1.33333 NA Intergenic L1MC4a|LINE|L1 138809 NM_001368307 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 412.833-3 chr8 55500292 55500950 + 1.33333 NA intron (NM_052898, intron 2 of 2) intron (NM_052898, intron 2 of 2) 20357 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 122-49 chr3 90069579 90069718 + 1.33333 NA Intergenic Intergenic 962027 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 198-41 chr4 42670968 42671216 + 1.33333 NA Intergenic Intergenic -13987 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 212.667-19 chr14 85421098 85421392 + 1.33333 NA Intergenic AluSq|SINE|Alu 27330 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 259.166-2 chr4 33031879 33032141 + 1.33333 NA Intergenic Intergenic 680972 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 148.167-25 chr15 90502346 90502517 + 1.33333 NA TTS (NM_003870) TTS (NM_003870) -27492 NM_022769 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 274.667-5 chr13 39790706 39791116 + 1.33333 NA 3' UTR (NM_001145079, exon 19 of 19) 3' UTR (NM_001145079, exon 19 of 19) -126776 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 251-10 chr15 64273992 64274337 + 1.33333 NA intron (NM_001329607, intron 2 of 11) intron (NM_001329607, intron 2 of 11) 82009 NM_001329606 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 153-18 chr14 55700559 55700857 + 1.33333 NA Intergenic THE1A|LTR|ERVL-MaLR -65537 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 153.333-49 chr3 31461860 31461977 + 1.33333 NA Intergenic Intergenic -71007 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 208.833-29 chr5 129293073 129293400 + 1.33333 NA Intergenic Intergenic 103911 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 150.833-26 chr21 29337459 29337594 + 1.33333 NA intron (NR_027655, intron 4 of 7) L1MC4a|LINE|L1 32322 NR_027655 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 185.833-6 chr1 214439907 214440384 + 1.33333 NA intron (NM_005401, intron 3 of 18) intron (NM_005401, intron 3 of 18) 111457 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 341.667-2 chr14 61811286 61811647 + 1.33333 NA promoter-TSS (NM_001367650) promoter-TSS (NM_001367650) -696 NM_001367650 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 177.333-64 chr8 92044745 92045029 + 1.33333 NA intron (NM_001198633, intron 1 of 10) intron (NM_001198633, intron 1 of 10) 17747 NM_004349 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 228.167-2 chr11 8968988 8969288 + 1.33333 NA intron (NR_073431, intron 4 of 4) intron (NR_073431, intron 4 of 4) -4127 NM_001286095 56674 Hs.501853 NM_020644 ENSG00000175348 TMEM9B C11orf15 TMEM9 domain family member B protein-coding 170-70 chr7 89152270 89152572 + 1.33333 NA intron (NM_181646, intron 1 of 3) HAL1b|LINE|L1 -356684 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 168.166-2 chr5 81613794 81613983 + 1.33333 NA intron (NM_012446, intron 4 of 16) intron (NM_012446, intron 4 of 16) 137365 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 137.5-26 chr13 61933532 61933761 + 1.33333 NA Intergenic L2a|LINE|L2 95902 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 197-19 chr17 74462586 74462878 + 1.33333 NA Intergenic Intergenic -3641 NM_001330456 11314 Hs.9688 NM_007261 ENSG00000167851 CD300A CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60 CD300a molecule protein-coding 249.166 chr8 109923827 109924100 + 1.33333 NA Intergenic Intergenic 51808 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 262-2 chr1 163025527 163025975 + 1.33333 NA Intergenic Intergenic -42855 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 284.499 chr14 72746166 72746436 + 1.33333 NA intron (NM_001280544, intron 3 of 9) intron (NM_001280544, intron 3 of 9) 146348 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 262.333-10 chr14 62317542 62317940 + 1.33333 NA Intergenic Intergenic -177768 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 120.333-100 chr5 165625266 165625431 + 1.33333 NA Intergenic Intergenic 1155069 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 172.333-50 chr3 108617546 108617873 + 1.33333 NA intron (NM_014648, intron 5 of 32) intron (NM_014648, intron 5 of 32) 27987 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 130.333-53 chr2 181351620 181351788 + 1.33333 NA intron (NR_130784, intron 3 of 4) intron (NR_130784, intron 3 of 4) -46052 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 261.333-7 chr2 57471399 57471624 + 1.33333 NA Intergenic Intergenic -436140 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 372-2 chr12 19664672 19665128 + 1.33333 NA Intergenic AluJb|SINE|Alu 224301 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 509.834 chr14 79368407 79369437 + 1.33333 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 89542 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 219.5-13 chr16 66721614 66722074 + 1.33333 NA non-coding (NR_136658, exon 14 of 14) non-coding (NR_136658, exon 14 of 14) -25101 NM_181521 146223 Hs.643961 NM_178818 ENSG00000183723 CMTM4 CKLFSF4 CKLF like MARVEL transmembrane domain containing 4 protein-coding 262.833-14 chr8 100592957 100593191 + 1.33333 NA intron (NM_152628, intron 10 of 13) L1MB7|LINE|L1 25331 NM_001363720 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 243-14 chr16 10630809 10631063 + 1.33333 NA intron (NM_144674, intron 6 of 6) AluSz|SINE|Alu -50338 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 173.666 chr2 193552884 193553017 + 1.33333 NA Intergenic L1MB7|LINE|L1 -791319 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 297.333-9 chr7 32291379 32291666 + 1.33333 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) 7806 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 299.999-3 chr9 69898493 69898740 + 1.33333 NA intron (NM_001010940, intron 5 of 5) L1MC4|LINE|L1 77799 NR_131756 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 230.333-11 chr2 104169576 104169994 + 1.33333 NA Intergenic L1ME1|LINE|L1 238547 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 249.333-25 chr7 9581514 9581847 + 1.33333 NA Intergenic (ATGT)n|Simple_repeat|Simple_repeat -52590 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 283.5-16 chr8 121532781 121533126 + 1.33333 NA Intergenic MIRb|SINE|MIR -106393 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 273.5-18 chr4 41255594 41255867 + 1.33333 NA intron (NR_102709, intron 1 of 2) MIR|SINE|MIR 997 NR_102709 101410542 Hs.518731 NR_102709 ENSG00000251173 UCHL1-AS1 - UCHL1 antisense RNA 1 (head to head) ncRNA 234.333-34 chr9 12392352 12392641 + 1.33333 NA Intergenic Intergenic -300889 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 194.5-2 chr1 147350119 147350323 + 1.33333 NA Intergenic Intergenic 107079 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 359.666-3 chr6 63633490 63633891 + 1.33333 NA Intergenic Intergenic -2112 NM_001370348 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 153.666 chr12 43282024 43282184 + 1.33333 NA Intergenic Intergenic 126789 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 202.833-11 chr15 80117828 80118001 + 1.33333 NA intron (NM_001242917, intron 2 of 6) Charlie1a|DNA|hAT-Charlie 19498 NM_001242919 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 429.5 chr2 153433252 153433837 + 1.33333 NA Intergenic Intergenic 45218 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 352.667-5 chr2 120409704 120410203 + 1.33333 NA Intergenic MLT1J|LTR|ERVL-MaLR 56396 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 141.166-3 chr5 40189189 40189335 + 1.33333 NA Intergenic Intergenic 136971 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 222.166-3 chr16 14255631 14255848 + 1.33333 NA intron (NM_001308142, intron 15 of 16) L1MEf|LINE|L1 -46549 NR_132983 100129781 Hs.190748 NR_132983 MIR193BHG - MIR193B host gene ncRNA 253.333-13 chr3 70165900 70166257 + 1.33333 NA Intergenic Intergenic 146560 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 282-13 chr2 149602639 149603059 + 1.33333 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -15074 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 215.166 chr5 43457715 43458036 + 1.33333 NA intron (NM_022483, intron 1 of 2) L1MC5|LINE|L1 25990 NM_022483 64417 Hs.732093 NM_022483 ENSG00000151881 TMEM267 C5orf28 transmembrane protein 267 protein-coding 277.333 chr1 86038290 86038621 + 1.33333 NA intron (NM_152890, intron 12 of 59) Zaphod|DNA|hAT-Tip100 118016 NM_001349955 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 217.667-48 chr8 82463618 82464069 + 1.33333 NA Intergenic Intergenic -448261 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 126.667-73 chr5 4030863 4031008 + 1.33333 NA Intergenic MER58A|DNA|hAT-Charlie 435103 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 307.833-10 chr6 53850596 53850928 + 1.33333 NA intron (NM_018214, intron 2 of 13) intron (NM_018214, intron 2 of 13) 55757 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 246.167-6 chr11 41181783 41182201 + 1.33333 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 277644 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 288.666-2 chr6 130901303 130901608 + 1.33333 NA intron (NM_001350320, intron 4 of 15) intron (NM_001350320, intron 4 of 15) 69028 NM_001350299 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 294-2 chr12 41407660 41408215 + 1.33333 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -29802 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 253.833-16 chr8 83409406 83409684 + 1.33333 NA TTS (NR_122034) TTS (NR_122034) 5787 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 163.333-23 chr14 45368528 45368708 + 1.33333 NA Intergenic Intergenic -115416 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 152-51 chr8 119087129 119087261 + 1.33333 NA intron (NM_006438, intron 1 of 5) L2b|LINE|L2 -18413 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 297.5-6 chr22 34140084 34140573 + 1.33333 NA Intergenic MLT1I|LTR|ERVL-MaLR -217440 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 265.667-21 chr7 39990488 39990861 + 1.33333 NA intron (NM_003718, intron 2 of 13) MIRc|SINE|MIR 40314 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 199-41 chr8 131432886 131433089 + 1.33333 NA Intergenic L1ME1|LINE|L1 -392078 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 210-9 chr15 70229235 70229469 + 1.33333 NA Intergenic Intergenic -131435 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 231.167-36 chr8 129151070 129151429 + 1.33333 NA Intergenic Intergenic 89991 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 272.833-7 chr3 176271012 176271402 + 1.33333 NA Intergenic Intergenic 26656 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 148.667-66 chr5 89912635 89912868 + 1.33333 NA Intergenic Intergenic 103969 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 272-6 chr2 41141115 41141580 + 1.33333 NA Intergenic L2c|LINE|L2 -628912 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 541.666 chr9 31264838 31265629 + 1.33333 NA Intergenic Intergenic 116257 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 229.5-24 chr7 81865528 81865814 + 1.33333 NA Intergenic Intergenic -95624 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 180.666-5 chr8 120773622 120773865 + 1.33333 NA intron (NR_125419, intron 3 of 4) MIR|SINE|MIR 12490 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 208.666-3 chr2 216794691 216794871 + 1.33333 NA Intergenic L1MA4A|LINE|L1 65283 NM_003284 7141 Hs.3017 NM_003284 ENSG00000118245 TNP1 TP1 transition protein 1 protein-coding 345.666 chr3 133619141 133619466 + 1.33333 NA intron (NM_001363889, intron 20 of 27) intron (NM_001363889, intron 20 of 27) 42638 NM_007027 11073 Hs.593379 NM_007027 ENSG00000163781 TOPBP1 Dpb11|TOP2BP1 DNA topoisomerase II binding protein 1 protein-coding 330-5 chr19 24401232 24401662 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr -238000 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 167.5-51 chr5 153260033 153260172 + 1.33333 NA Intergenic Intergenic -230422 NM_001258019 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 296.666-5 chr5 68045235 68045506 + 1.33333 NA Intergenic Intergenic -144506 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 133.5-87 chr9 93105977 93106166 + 1.33333 NA intron (NR_134468, intron 1 of 4) L1MB4|LINE|L1 9854 NR_134468 84270 Hs.434213 NM_032310 ENSG00000165233 CARD19 BinCARD|C9orf89 caspase recruitment domain family member 19 protein-coding 450.833 chr16 10807979 10808582 + 1.33333 NA intron (NR_134903, intron 1 of 8) intron (NR_134903, intron 1 of 8) 10514 NR_134903 780776 Hs.371576 NM_001079512 ENSG00000166676 TVP23A FAM18A|YDR084C trans-golgi network vesicle protein 23 homolog A protein-coding 216-27 chr5 99883573 99883822 + 1.33333 NA Intergenic L1ME3A|LINE|L1 349707 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 208-18 chr2 25646745 25646976 + 1.33333 NA intron (NM_033147, intron 2 of 19) MER4B|LTR|ERV1 3362 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 486.999 chr8 89419850 89420227 + 1.33333 NA Intergenic Intergenic 337673 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 271.333-6 chr13 37203288 37203641 + 1.33333 NA Intergenic Intergenic -97800 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 236.5-14 chr16 9980894 9981326 + 1.33333 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 200957 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 185-44 chr5 172838740 172838957 + 1.33333 NA intron (NM_001031711, intron 1 of 9) intron (NM_001031711, intron 1 of 9) 4597 NM_001031711 57222 Hs.509163 NM_020462 ENSG00000113719 ERGIC1 AMCN|ERGIC-32|ERGIC32|NET24 endoplasmic reticulum-golgi intermediate compartment 1 protein-coding 346.666-2 chr2 74206066 74206670 + 1.33333 NA intron (NM_006636, intron 2 of 7) intron (NM_006636, intron 2 of 7) 7753 NM_006636 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 331.999 chr7 117848519 117848802 + 1.33333 NA intron (NM_001363351, intron 2 of 22) intron (NM_001363351, intron 2 of 22) 23560 NM_001363350 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 278.667-15 chr5 36101719 36102111 + 1.33333 NA 3' UTR (NM_001007527, exon 18 of 18) 3' UTR (NM_001007527, exon 18 of 18) -35033 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 143-8 chr1 233268518 233268688 + 1.33333 NA intron (NM_014801, intron 1 of 33) intron (NM_014801, intron 1 of 33) 27122 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 262.166-3 chr8 131926461 131926814 + 1.33333 NA intron (NM_001323557, intron 1 of 22) AluJr|SINE|Alu 9864 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 170-86 chrX 123000016 123000221 + 1.33333 NA Intergenic L1PB1|LINE|L1 -184125 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 224.001 chr8 60172279 60172722 + 1.33333 NA Intergenic Intergenic 108900 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 267.833-4 chr11 113138881 113139258 + 1.33333 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) 134832 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 509.833 chr11 96702315 96702863 + 1.33333 NA Intergenic Intergenic 194164 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 186.666 chr2 135157929 135158134 + 1.33333 NA intron (NM_001172435, intron 19 of 24) L1MC4|LINE|L1 21403 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 156.667-51 chr2 75042868 75043078 + 1.33333 NA Intergenic Intergenic -47839 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 209.666-2 chr2 59258424 59258657 + 1.33333 NA intron (NR_110219, intron 2 of 2) MER58B|DNA|hAT-Charlie 40832 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 127.167-74 chr6 16741705 16741833 + 1.33333 NA intron (NR_152112, intron 1 of 1) intron (NR_152112, intron 1 of 1) 18415 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 220.333-2 chr10 55427949 55428284 + 1.33333 NA intron (NM_001354404, intron 2 of 34) L1MEc|LINE|L1 -170926 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 115.167-50 chr19 37896991 37897147 + 1.33333 NA intron (NM_031951, intron 2 of 5) intron (NM_031951, intron 2 of 5) 9525 NM_001291088 83889 Hs.664194 NM_031951 ENSG00000171804 WDR87 NYD-SP11 WD repeat domain 87 protein-coding 234.167-7 chr2 5535206 5535528 + 1.33333 NA Intergenic Intergenic 155751 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 272.666-3 chr17 67541745 67542067 + 1.33333 NA intron (NM_181671, intron 2 of 9) L3|LINE|CR1 -70321 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 286.5-15 chr7 33607811 33608221 + 1.33333 NA intron (NM_001348041, intron 22 of 22) L1PA16|LINE|L1 -296899 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 290.166 chr11 115693991 115694314 + 1.33333 NA Intergenic L1MB2|LINE|L1 40610 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 219.333-34 chr5 151775683 151775884 + 1.33333 NA intron (NM_198395, intron 1 of 11) intron (NM_198395, intron 1 of 11) -3607 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 349-5 chr2 26219292 26219720 + 1.33333 NA intron (NM_000182, intron 7 of 19) ERVL-E-int|LTR|ERVL 25126 NM_000182 3030 Hs.516032 NM_000182 ENSG00000084754 HADHA ECHA|GBP|HADH|LCEH|LCHAD|MTPA|TP-ALPHA hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha protein-coding 376.999 chr7 14829852 14830373 + 1.33333 NA intron (NM_001350717, intron 2 of 24) intron (NM_001350717, intron 2 of 24) 11338 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 323.501-2 chr12 133086137 133086732 + 1.33333 NA intron (NM_001300777, intron 4 of 4) L1ME3B|LINE|L1 6231 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 114.667-100 chr5 67499380 67499523 + 1.33333 NA Intergenic L1PA16|LINE|L1 147338 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 116.333-70 chr4 91316754 91316866 + 1.33333 NA intron (NM_001145065, intron 10 of 10) L2a|LINE|L2 960492 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 402.166 chr9 32285020 32285421 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -99383 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 115.666 chr8 123281867 123281970 + 1.33333 NA Intergenic Intergenic -6377 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 141.333-54 chr20 7736639 7736916 + 1.33333 NA Intergenic Intergenic 203681 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 287.501 chr14 84913467 84913722 + 1.33333 NA Intergenic MER57A-int|LTR|ERV1 -358338 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 203.333-14 chr18 44443163 44443375 + 1.33333 NA intron (NR_110792, intron 2 of 4) intron (NR_110792, intron 2 of 4) 88428 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 380.666 chr18 1770469 1770950 + 1.33333 NA Intergenic L1MB3|LINE|L1 -411080 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 703.667 chr5 49599501 49600764 + 1.33333 NA Intergenic BSR/Beta|Satellite|Satellite 841156 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 123.333-75 chr3 120485609 120485802 + 1.33333 NA Intergenic L1MA7|LINE|L1 -34713 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 125.333-112 chr7 29239073 29239198 + 1.33333 NA intron (NM_001293072, intron 1 of 12) L2a|LINE|L2 -30165 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 309.333-3 chr14 64095101 64095378 + 1.33333 NA promoter-TSS (NR_031677) promoter-TSS (NR_031677) -114 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 128-69 chr4 102678788 102678935 + 1.33333 NA intron (NM_005908, intron 7 of 16) intron (NM_005908, intron 7 of 16) 82107 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 300-4 chr17 48454673 48455148 + 1.33333 NA intron (NR_110804, intron 3 of 5) LTR1E|LTR|ERV1 10077 NR_110804 101927166 Hs.149244 NR_110804 LOC101927166 - uncharacterized LOC101927166 ncRNA 505.5 chr10 65694743 65695480 + 1.33333 NA intron (NR_120647, intron 4 of 5) intron (NR_120647, intron 4 of 5) 123686 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 254-3 chr13 22553802 22554137 + 1.33333 NA Intergenic L1MEg|LINE|L1 343684 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 248.834-5 chr17 71200499 71200881 + 1.33333 NA intron (NR_104152, intron 1 of 3) LTR33|LTR|ERVL 1489 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 189-14 chr2 105360822 105361129 + 1.33333 NA 3' UTR (NM_001318899, exon 8 of 8) 3' UTR (NM_001318899, exon 8 of 8) 23435 NM_001286537 79074 Hs.549577 NM_024093 ENSG00000135974 C2orf49 asw chromosome 2 open reading frame 49 protein-coding 122.666 chr1 55236508 55236760 + 1.33333 NA Intergenic Intergenic 10993 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 365.5-3 chr18 11301460 11301847 + 1.33333 NA Intergenic L1MA2|LINE|L1 -152825 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 199.666-2 chr12 107681964 107682136 + 1.33333 NA Intergenic MER52C|LTR|ERV1 -3682 NM_001317963 11137 Hs.506652 NM_007062 ENSG00000136045 PWP1 IEF-SSP-9502 PWP1 homolog, endonuclein protein-coding 218.333-17 chr16 86531145 86531336 + 1.33333 NA non-coding (NR_027489, exon 9 of 9) non-coding (NR_027489, exon 9 of 9) 20713 NM_001451 2294 Hs.155591 NM_001451 ENSG00000103241 FOXF1 ACDMPV|FKHL5|FREAC1 forkhead box F1 protein-coding 275.333-3 chr1 73167905 73168309 + 1.33333 NA Intergenic Arthur1B|DNA|hAT-Tip100 -138063 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 188-16 chr11 78316282 78316438 + 1.33333 NA intron (NM_080491, intron 1 of 9) MLT2B3|LTR|ERVL 25520 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 245-20 chr8 101336871 101337165 + 1.33333 NA Intergenic Intergenic -31875 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 243.5-19 chr20 44420670 44420968 + 1.33333 NA intron (NM_001287183, intron 8 of 10) AluJr|SINE|Alu 12699 NR_037419 100500813 NR_037419 ENSG00000266151 MIR3646 - microRNA 3646 ncRNA 142-34 chr17 21973016 21973182 + 1.33333 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat -229896 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 294.666-5 chr8 105638339 105638571 + 1.33333 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 318912 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 224.167-19 chr4 39350415 39350831 + 1.33333 NA intron (NM_001204747, intron 2 of 24) L1MEf|LINE|L1 15739 NM_001363496 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 433.333 chr2 83274968 83275416 + 1.33333 NA Intergenic Intergenic -247622 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 236.666-5 chr7 27741021 27741255 + 1.33333 NA intron (NM_001362794, intron 1 of 16) intron (NM_001362794, intron 1 of 16) 1043 NM_001079864 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 381.333-5 chr8 86300842 86301394 + 1.33333 NA Intergenic Intergenic -41429 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 209-32 chr3 17795883 17796062 + 1.33333 NA Intergenic L1MB4|LINE|L1 53028 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 260.333-4 chr14 24912218 24912526 + 1.33333 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 136628 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 171.5-47 chr4 155213641 155214123 + 1.33333 NA intron (NM_000910, intron 1 of 1) (T)n|Simple_repeat|Simple_repeat 5246 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 158.5-91 chrX 51864545 51864730 + 1.33333 NA intron (NM_001005332, intron 1 of 12) L1MA9|LINE|L1 -28986 NM_006986 9500 Hs.5258 NM_006986 ENSG00000179222 MAGED1 DLXIN-1|NRAGE MAGE family member D1 protein-coding 275-15 chr8 22664604 22664963 + 1.33333 NA intron (NM_018688, intron 1 of 8) intron (NM_018688, intron 1 of 8) 4338 NM_018688 55909 Hs.433722 NM_018688 ENSG00000147439 BIN3 - bridging integrator 3 protein-coding 330.166-2 chr14 64670504 64670868 + 1.33333 NA Intergenic Intergenic -33738 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 155-15 chr11 41893323 41893462 + 1.33333 NA Intergenic L2-3_Crp|LINE|L2 178824 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 326-8 chr6 165133904 165134467 + 1.33333 NA Intergenic Intergenic 175420 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 117.666 chr3 79655400 79655494 + 1.33333 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 112551 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 293.166-2 chr15 60655523 60655818 + 1.33333 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) -25899 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 149.5-11 chr10 74103083 74103219 + 1.33333 NA intron (NM_014000, intron 14 of 21) AluSx1|SINE|Alu 47677 NM_001320265 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 130-61 chr20 8786435 8786615 + 1.33333 NA intron (NM_182734, intron 27 of 32) MIR|SINE|MIR -44660 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 139.667-33 chr16 12151675 12151808 + 1.33333 NA intron (NM_032167, intron 13 of 20) AluSx|SINE|Alu 175007 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 128.333-7 chr1 173934969 173935151 + 1.33333 NA 3' UTR (NM_172071, exon 19 of 19) 3' UTR (NM_172071, exon 19 of 19) -17682 NM_000488 462 Hs.75599 NM_000488 ENSG00000117601 SERPINC1 AT3|AT3D|ATIII|ATIII-R2|ATIII-T1|ATIII-T2|THPH7 serpin family C member 1 protein-coding 149-15 chr10 84558163 84558359 + 1.33333 NA Intergenic L1MEg|LINE|L1 133092 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 226.666-6 chr8 122824443 122824630 + 1.33333 NA intron (NM_001362797, intron 1 of 4) MIR3|SINE|MIR 42881 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 134.666 chr8 111432912 111433019 + 1.33333 NA intron (NR_146282, intron 2 of 3) L1M5|LINE|L1 56326 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 262.167-11 chr2 182047749 182048387 + 1.33333 NA intron (NM_001261425, intron 2 of 5) intron (NM_001261425, intron 2 of 5) 62215 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 138-15 chr10 81729410 81729556 + 1.33333 NA Intergenic Intergenic -145711 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 228.333-8 chr13 49471967 49472155 + 1.33333 NA intron (NM_001320727, intron 5 of 19) FLAM_C|SINE|Alu -23892 NM_001040443 51131 Hs.369039 NM_001040443 ENSG00000136147 PHF11 APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34 PHD finger protein 11 protein-coding 388.499 chr2 135231105 135231440 + 1.33333 NA intron (NM_001286569, intron 13 of 21) MIR|SINE|MIR 94644 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 221-5 chr12 14396546 14396795 + 1.33333 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 11389 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 165-39 chr4 36407534 36407733 + 1.33333 NA Intergenic Intergenic 18795 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 270-8 chr3 67179607 67179903 + 1.33333 NA Intergenic Intergenic -45709 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 307.333-5 chr2 18005915 18006146 + 1.33333 NA Intergenic Intergenic 127363 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 260-11 chr2 65579265 65579537 + 1.33333 NA Intergenic AluSx1|SINE|Alu -146802 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 316.333-5 chr14 59998796 59999246 + 1.33333 NA intron (NR_075071, intron 18 of 32) intron (NR_075071, intron 18 of 32) 79308 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 282.5-6 chr2 53593812 53594136 + 1.33333 NA Intergenic Intergenic -173809 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 251.834-2 chr1 194430162 194430833 + 1.33333 NA Intergenic LTR12D|LTR|ERV1 1125752 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 189.666 chr7 46320971 46321202 + 1.33333 NA Intergenic Intergenic 376036 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 188.667-46 chr5 90099557 90099840 + 1.33333 NA Intergenic Intergenic -82978 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 188.333-17 chr14 73889077 73889365 + 1.33333 NA intron (NR_040251, intron 1 of 11) AluJb|SINE|Alu 2362 NM_021188 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 249.666-2 chr8 122194805 122195043 + 1.33333 NA Intergenic Intergenic 373720 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 379.833-5 chr6 72202348 72202745 + 1.33333 NA intron (NM_014989, intron 6 of 33) MLT1B|LTR|ERVL-MaLR -10347 NM_001350439 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 178.166-4 chr4 49025693 49025911 + 1.33333 NA intron (NM_001286791, intron 9 of 15) L1PB1|LINE|L1 39160 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 210.499 chr1 220006851 220007028 + 1.33333 NA intron (NM_004446, intron 14 of 31) intron (NM_004446, intron 14 of 31) 39566 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 453.833-2 chr8 70378935 70379418 + 1.33333 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 24214 NM_001321713 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 385 chr11 94976280 94976771 + 1.33333 NA intron (NM_018039, intron 2 of 2) L2a|LINE|L2 2816 NM_018039 55693 Hs.503598 NM_018039 ENSG00000186280 KDM4D JMJD2D lysine demethylase 4D protein-coding 197.333-49 chr5 102823451 102823680 + 1.33333 NA intron (NM_001364582, intron 1 of 24) intron (NM_001364582, intron 1 of 24) 15367 NM_001364582 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 378-5 chrX 39239939 39240407 + 1.33333 NA Intergenic Intergenic 87189 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 210.833-22 chr5 12075755 12076037 + 1.33333 NA Intergenic L1MEb|LINE|L1 -171450 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 278.666 chr12 51768281 51768594 + 1.33333 NA intron (NM_001369788, intron 16 of 25) intron (NM_001369788, intron 16 of 25) 63480 NM_001013690 401720 Hs.648218 NM_001013690 ENSG00000261308 FIGNL2 - fidgetin like 2 protein-coding 249-18 chr7 49405299 49405645 + 1.33333 NA Intergenic THE1B|LTR|ERVL-MaLR -368166 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 333.666-2 chr21 29261816 29262085 + 1.33333 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -36972 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 438.666 chr11 81050409 81050837 + 1.33333 NA Intergenic Intergenic -287820 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 134.833-47 chr4 113199611 113199778 + 1.33333 NA intron (NM_001354275, intron 5 of 43) intron (NM_001354275, intron 5 of 43) 47412 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 280.166-4 chr8 110258533 110258779 + 1.33333 NA Intergenic L1ME1|LINE|L1 -282885 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 327.333-8 chr3 192513446 192513792 + 1.33333 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -1403 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 352-5 chr9 30741031 30741520 + 1.33333 NA Intergenic L1MA4A|LINE|L1 -332821 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 186.833-31 chr4 62103601 62103799 + 1.33333 NA intron (NR_110595, intron 6 of 7) intron (NR_110595, intron 6 of 7) 58065 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 256.999-2 chr8 117109447 117109751 + 1.33333 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -25396 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 210.166-2 chr21 27726058 27726399 + 1.33333 NA intron (NR_024357, intron 1 of 3) MER50-int|LTR|ERV1 3849 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 232.5-14 chr16 80069913 80070404 + 1.33333 NA Intergenic Intergenic 274909 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 205.333-61 chr8 89441078 89441413 + 1.33333 NA Intergenic L1PA16|LINE|L1 316466 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 155-10 chr10 56752956 56753159 + 1.33333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -391784 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 194.5-37 chr5 162638570 162638879 + 1.33333 NA Intergenic Intergenic 571082 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 126.666-2 chr15 66648112 66648360 + 1.33333 NA intron (NR_110372, intron 1 of 4) MER106A|DNA|hAT-Charlie -54000 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 180.166-2 chr2 41446419 41446555 + 1.33333 NA Intergenic Intergenic -431068 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 302.333-9 chr7 11484300 11484644 + 1.33333 NA intron (NM_015204, intron 6 of 26) L2a|LINE|L2 347726 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 287.5-3 chr12 14645177 14645714 + 1.33333 NA intron (NM_004963, intron 15 of 26) intron (NM_004963, intron 15 of 26) 51154 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 299-3 chr10 43619659 43620087 + 1.33333 NA Intergenic MLT1G3|LTR|ERVL-MaLR -8944 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 415.833-2 chr5 101946371 101946779 + 1.33333 NA Intergenic Intergenic 349709 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 189.5-44 chr4 73576521 73576781 + 1.33333 NA exon (NM_001270392, exon 8 of 10) exon (NM_001270392, exon 8 of 10) 43785 NM_177532 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 164.5-45 chr5 91738189 91738481 + 1.33333 NA Intergenic Intergenic -355018 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 138-107 chr8 102857715 102857906 + 1.33333 NA intron (NM_001363083, intron 2 of 12) intron (NM_001363083, intron 2 of 12) 6353 NM_148174 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 165.333-9 chr11 111701607 111701840 + 1.33333 NA intron (NM_015191, intron 6 of 14) intron (NM_015191, intron 6 of 14) 64666 NM_181700 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 162.667-75 chr6 151881086 151881304 + 1.33333 NA intron (NM_001122741, intron 4 of 8) intron (NM_001122741, intron 4 of 8) 72088 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 273-5 chr2 117418072 117418310 + 1.33333 NA Intergenic Intergenic -396500 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 291.833-7 chr6 145958041 145958473 + 1.33333 NA intron (NM_001370328, intron 1 of 31) L1ME1|LINE|L1 5840 NM_173082 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 173.833-6 chr1 216190764 216190917 + 1.33333 NA intron (NM_206933, intron 19 of 71) intron (NM_206933, intron 19 of 71) 118375 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 340.666-2 chr5 126991954 126992429 + 1.33333 NA intron (NM_178450, intron 1 of 4) intron (NM_178450, intron 1 of 4) 38367 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 184-42 chr4 91348609 91348784 + 1.33333 NA intron (NM_001145065, intron 10 of 10) L1MC2|LINE|L1 928606 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 185-14 chr14 32075325 32075514 + 1.33333 NA TTS (NR_027263) TTS (NR_027263) 1280 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 162.333-4 chr1 160324822 160325032 + 1.33333 NA intron (NM_001098398, intron 7 of 32) intron (NM_001098398, intron 7 of 32) 7662 NR_002190 474338 Hs.621179 NR_002190 SUMO1P3 - SUMO1 pseudogene 3 pseudo 155.666-3 chr5 59674014 59674137 + 1.33333 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 29628 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 369.833 chr10 63093238 63093704 + 1.33333 NA Intergenic MER20B|DNA|hAT-Charlie -39776 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 474.999 chr5 79378608 79379081 + 1.33333 NA intron (NM_001277078, intron 5 of 5) intron (NM_001277078, intron 5 of 5) 134992 NM_001277078 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 166.666-2 chr3 18726194 18726348 + 1.33333 NA Intergenic Intergenic -280679 NM_001322872 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 251.333-17 chr3 124796451 124796799 + 1.33333 NA exon (NM_001354765, exon 10 of 15) exon (NM_001354765, exon 10 of 15) 64186 NR_036088 100422864 NR_036088 ENSG00000265981 MIR544B - microRNA 544b ncRNA 390 chr1 152523168 152523808 + 1.33333 NA Intergenic Intergenic 9006 NM_019060 54544 Hs.110196 NM_019060 ENSG00000169509 CRCT1 C1orf42|NICE-1|NICE1 cysteine rich C-terminal 1 protein-coding 300.5 chr1 99530451 99530943 + 1.33333 NA intron (NR_031666, intron 3 of 4) intron (NR_031666, intron 3 of 4) -42893 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 209-17 chr12 34494638 34494922 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr 472284 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 208.166-2 chr2 135758353 135758556 + 1.33333 NA intron (NM_014607, intron 5 of 12) AluJr4|SINE|Alu -15810 NR_163478 107985946 Hs.591242 NM_001365239 LOC107985946 - uncharacterized LOC107985946 ncRNA 375.166 chr18 10355254 10355772 + 1.33333 NA Intergenic L2a|LINE|L2 58857 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 265.333-23 chr8 131360053 131360297 + 1.33333 NA Intergenic L1PA15|LINE|L1 -319266 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 269.333-9 chr16 35951732 35952042 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr 205335 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 299-7 chr17 71380732 71381155 + 1.33333 NA Intergenic Intergenic -178764 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 226.333-12 chr16 55167754 55168031 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -156667 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 117.333-107 chr8 68682345 68682460 + 1.33333 NA intron (NR_146187, intron 8 of 13) MER34C_|LTR|ERV1 -350911 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 165.333-61 chr7 42035692 42035887 + 1.33333 NA intron (NM_000168, intron 7 of 14) intron (NM_000168, intron 7 of 14) 201420 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 243.667-10 chr12 42555535 42555930 + 1.33333 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) 34014 NM_153026 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 280.333-6 chr12 41214777 41215171 + 1.33333 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 26654 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 278.333-2 chr1 105603578 105603829 + 1.33333 NA intron (NR_125954, intron 3 of 3) intron (NR_125954, intron 3 of 3) 15232 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 336.666-2 chr12 102176258 102176671 + 1.33333 NA intron (NM_001319994, intron 7 of 10) intron (NM_001319994, intron 7 of 10) 21369 NM_002674 5367 Hs.707990 NM_002674 ENSG00000183395 PMCH MCH|ppMCH pro-melanin concentrating hormone protein-coding 288.833-10 chr7 41327340 41328048 + 1.33333 NA Intergenic Intergenic 226090 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 250.666-3 chr2 73141491 73141702 + 1.33333 NA Intergenic L1MEh|LINE|L1 -28648 NM_015470 26056 Hs.24557 NM_015470 ENSG00000135631 RAB11FIP5 GAF1|RIP11|pp75 RAB11 family interacting protein 5 protein-coding 198-35 chr20 1249769 1249993 + 1.33333 NA intron (NM_001136566, intron 13 of 13) L1PA5|LINE|L1 -16413 NM_014723 9751 Hs.323833 NM_014723 ENSG00000101298 SNPH - syntaphilin protein-coding 296-13 chr4 76516121 76516406 + 1.33333 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) -57305 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 158-9 chr11 20353763 20353986 + 1.33333 NA Intergenic Intergenic -9811 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 294 chr11 13201022 13201337 + 1.33333 NA Intergenic L1PA16|LINE|L1 -75473 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 295.499-2 chr2 202692219 202692499 + 1.33333 NA intron (NM_173511, intron 1 of 7) intron (NM_173511, intron 1 of 7) 57390 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 196.167-2 chr1 171513960 171514797 + 1.33333 NA intron (NM_015172, intron 3 of 33) intron (NM_015172, intron 3 of 33) 28848 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 292-7 chr2 239442055 239442311 + 1.33333 NA Intergenic Intergenic 40435 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 229.166-3 chrX 96051713 96051908 + 1.33333 NA Intergenic L1MC4a|LINE|L1 286092 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 361.499 chr21 31415293 31415895 + 1.33333 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -71240 NM_001353686 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 237.333-23 chr3 32319285 32319584 + 1.33333 NA intron (NM_001320308, intron 1 of 2) (CTC)n|Simple_repeat|Simple_repeat -72419 NM_181472 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 203.167-34 chr6 123706860 123707125 + 1.33333 NA Intergenic Intergenic -69899 NM_001256022 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 316.333-7 chr2 67390374 67390762 + 1.33333 NA Intergenic L1ME1|LINE|L1 -6765 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 281-19 chr6 146677886 146678130 + 1.33333 NA intron (NM_024694, intron 9 of 35) intron (NM_024694, intron 9 of 35) 79036 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 188.667-16 chr12 94314453 94314699 + 1.33333 NA intron (NM_001042399, intron 13 of 15) L1ME3A|LINE|L1 52055 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 213.833-32 chr5 106777311 106777536 + 1.33333 NA Intergenic L2a|LINE|L2 233591 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 422.666-2 chr14 41306312 41306787 + 1.33333 NA Intergenic Intergenic -300307 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 328.667-8 chr20 22268954 22269369 + 1.33333 NA Intergenic L1MA9|LINE|L1 13640 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 190-31 chr2 135675147 135675343 + 1.33333 NA intron (NM_001282798, intron 18 of 25) intron (NM_001282798, intron 18 of 25) 9848 NR_029672 406915 NR_029672 ENSG00000207654 MIR128-1 MIR128A|MIRN128-1|MIRN128A|mir-128-1 microRNA 128-1 ncRNA 164-29 chr2 37058886 37059040 + 1.33333 NA exon (NM_019024, exon 13 of 36) exon (NM_019024, exon 13 of 36) 25409 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 280.166 chr14 49785160 49785532 + 1.33333 NA 3' UTR (NM_014315, exon 13 of 13) 3' UTR (NM_014315, exon 13 of 13) 17193 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 301.834-2 chr19 29357512 29357882 + 1.33333 NA intron (NR_040029, intron 9 of 9) L1MA8|LINE|L1 -144546 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 143.333-29 chr18 13746025 13746160 + 1.33333 NA intron (NM_003799, intron 8 of 11) intron (NM_003799, intron 8 of 11) 19419 NM_001308263 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 236.333-24 chr7 13771844 13772094 + 1.33333 NA Intergenic MER57A-int|LTR|ERV1 214545 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 169.833-30 chr6 111694440 111694663 + 1.33333 NA intron (NM_153047, intron 11 of 13) intron (NM_153047, intron 11 of 13) 64580 NM_153048 2534 Hs.390567 NM_002037 ENSG00000010810 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 291.167-10 chr7 41918158 41918620 + 1.33333 NA Intergenic Intergenic -215299 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 141.333-56 chr20 44781546 44781672 + 1.33333 NA intron (NM_001205317, intron 1 of 5) intron (NM_001205317, intron 1 of 5) 28937 NM_001205317 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 212.667-36 chr5 120742876 120743162 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR 211555 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 264.666-5 chr2 185357667 185357988 + 1.33333 NA Intergenic Intergenic -190755 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 144.666-3 chr9 90776174 90776364 + 1.33333 NA Intergenic L1ME3A|LINE|L1 -25331 NM_001174168 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 219-11 chr2 20023678 20023873 + 1.33333 NA Intergenic L2|LINE|L2 -11107 NM_002381 4148 Hs.656199 NM_002381 ENSG00000132031 MATN3 DIPOA|EDM5|HOA|OADIP|OS2 matrilin 3 protein-coding 169.833-9 chr11 2055591 2055912 + 1.33333 NA Intergenic (CTCCATT)n|Simple_repeat|Simple_repeat -54285 NR_131224 283120 Hs.533566 NR_002196 ENSG00000130600 H19 ASM|ASM1|BWS|D11S813E|LINC00008|MIR675HG|NCRNA00008|WT2 H19 imprinted maternally expressed transcript ncRNA 319.333-3 chr10 60787948 60788205 + 1.33333 NA exon (NM_001320918, exon 5 of 8) exon (NM_001320918, exon 5 of 8) 9598 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 234.5-30 chr6 158622184 158622512 + 1.33333 NA intron (NM_020823, intron 10 of 16) MER44D|DNA|TcMar-Tigger 12641 NR_106981 102465694 NR_106981 ENSG00000278571 MIR7161 hsa-mir-7161 microRNA 7161 ncRNA 311.999 chr3 98958790 98959153 + 1.33333 NA Intergenic MIRc|SINE|MIR -57276 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 291-3 chr12 12663241 12663494 + 1.33333 NA intron (NM_006143, intron 3 of 3) FLAM_C|SINE|Alu 32816 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 284.666 chr1 183016594 183016973 + 1.33333 NA Intergenic L1ME3|LINE|L1 -6637 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 194-37 chr3 79217512 79217799 + 1.33333 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -194072 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 258.333-4 chr1 186413587 186414005 + 1.33333 NA intron (NM_001164246, intron 11 of 12) intron (NM_001164246, intron 11 of 12) 13224 NM_022375 10896 Hs.679230 NM_022375 ENSG00000262180 OCLM TISR oculomedin protein-coding 148-4 chr1 96206148 96206342 + 1.33333 NA Intergenic Intergenic 167880 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 291.333-12 chr8 113319295 113319590 + 1.33333 NA intron (NM_001363185, intron 1 of 66) L1M3|LINE|L1 57710 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 309.5-12 chr8 127621863 127622163 + 1.33333 NA Intergenic L1MC5|LINE|L1 111954 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 122-20 chr15 27373737 27373916 + 1.33333 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -212507 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 188-9 chr10 67756762 67756989 + 1.33333 NA Intergenic Intergenic -60680 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 147.167-33 chr2 162046899 162047072 + 1.33333 NA exon (NM_001935, exon 4 of 26) exon (NM_001935, exon 4 of 26) 27230 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 191.166-2 chr3 185516550 185516721 + 1.33333 NA intron (NM_139248, intron 7 of 9) intron (NM_139248, intron 7 of 9) -17600 NM_080652 90407 Hs.677570 NM_080652 ENSG00000163900 TMEM41A 2900010K02Rik transmembrane protein 41A protein-coding 113.833-67 chr5 1532502 1532610 + 1.33333 NA Intergenic L1MEc|LINE|L1 -8596 NM_024830 79888 Hs.368853 NM_024830 ENSG00000153395 LPCAT1 AGPAT10|AGPAT9|AYTL2|LPCAT-1|PFAAP3|lpcat|lysoPAFAT lysophosphatidylcholine acyltransferase 1 protein-coding 199.166-2 chr4 103854818 103855012 + 1.33333 NA Intergenic ERVL-E-int|LTR|ERVL -134930 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 318.666 chr10 60367208 60367629 + 1.33333 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 22457 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 224.666 chr14 48303359 48303672 + 1.33333 NA Intergenic Intergenic -508501 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 170.333-72 chr8 100580580 100580813 + 1.33333 NA intron (NM_152628, intron 12 of 13) MLT1J|LTR|ERVL-MaLR -20937 NM_001270379 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 238.667-16 chr20 12317661 12317883 + 1.33333 NA Intergenic MER58B|DNA|hAT-Charlie 399879 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 247-12 chr22 22040946 22041212 + 1.33333 NA intron (NR_135291, intron 1 of 6) L1M5|LINE|L1 2855 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 328.5 chr1 38391263 38391727 + 1.33333 NA Intergenic L1MEd|LINE|L1 -83701 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 253-3 chr11 66180516 66180826 + 1.33333 NA intron (NM_018026, intron 1 of 23) intron (NM_018026, intron 1 of 23) -76623 NM_001134775 64837 Hs.280792 NM_022822 ENSG00000174996 KLC2 - kinesin light chain 2 protein-coding 170.166 chr13 69120440 69120661 + 1.33333 NA Intergenic L1PB1|LINE|L1 -101796 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 257.333-15 chr3 163978630 163978902 + 1.33333 NA Intergenic Intergenic 192790 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 156.666-3 chr7 7230072 7230248 + 1.33333 NA intron (NM_020156, intron 1 of 3) Charlie16a|DNA|hAT-Charlie -24994 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 476.5-2 chr7 5059593 5060197 + 1.33333 NA intron (NM_001204513, intron 4 of 5) intron (NM_001204513, intron 4 of 5) -12165 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 300-5 chr2 12336063 12336391 + 1.33333 NA intron (NR_110196, intron 4 of 5) L2b|LINE|L2 137097 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 222.333-38 chr8 124596766 124597091 + 1.33333 NA intron (NM_001282971, intron 3 of 14) MLT1C|LTR|ERVL-MaLR 57805 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 213.333-40 chr7 17328809 17329098 + 1.33333 NA intron (NM_001621, intron 4 of 10) intron (NM_001621, intron 4 of 10) 30301 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 234-34 chr6 161715378 161715681 + 1.33333 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 244552 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 191.333-34 chr6 25856911 25857113 + 1.33333 NA intron (NM_006632, intron 4 of 11) AluJr|SINE|Alu 17231 NM_001098486 10786 Hs.327179 NM_006632 ENSG00000124564 SLC17A3 GOUT4|NPT4|UAQTL4 solute carrier family 17 member 3 protein-coding 202.333-42 chr6 153485504 153485801 + 1.33333 NA Intergenic Intergenic -354370 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 442.332 chr2 112686410 112686821 + 1.33333 NA Intergenic Intergenic -34871 NM_001350494 284958 Hs.589714 NM_001350494 ENSG00000144130 NT5DC4 - 5'-nucleotidase domain containing 4 protein-coding 238.167-25 chr8 9176261 9176457 + 1.33333 NA Intergenic Intergenic -12640 NR_125431 101929128 NR_125431 ENSG00000248538 LOC101929128 - uncharacterized LOC101929128 ncRNA 329.167-4 chr6 162484101 162484462 + 1.33333 NA intron (NM_004562, intron 1 of 11) L2|LINE|L2 -242851 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 167.334-3 chr3 65703415 65703821 + 1.33333 NA intron (NM_001365904, intron 1 of 24) L2|LINE|L2 -190198 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 166.167-55 chr6 120565758 120565895 + 1.33333 NA Intergenic L1ME1|LINE|L1 550647 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 243.667-5 chr10 24116357 24116699 + 1.33333 NA intron (NM_001098500, intron 2 of 18) MER58A|DNA|hAT-Charlie -92263 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 170.667-67 chr7 1468707 1469310 + 1.33333 NA Intergenic Intergenic -9538 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 335.999-2 chr2 137057997 137058308 + 1.33333 NA intron (NM_001316349, intron 3 of 27) intron (NM_001316349, intron 3 of 27) 292607 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 244-4 chr11 84614470 84614919 + 1.33333 NA intron (NM_001351274, intron 5 of 26) MIRc|SINE|MIR 106248 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 202.333-33 chr4 57615645 57615930 + 1.33333 NA Intergenic LFSINE_Vert|SINE|tRNA 189915 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 267.333-12 chr2 19577807 19578061 + 1.33333 NA Intergenic MIRc|SINE|MIR -219311 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 217.166 chr1 55277851 55278128 + 1.33333 NA Intergenic Intergenic 52348 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 167.666-2 chr5 36771274 36771535 + 1.33333 NA Intergenic Intergenic 105290 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 254.333-18 chr8 136031481 136031822 + 1.33333 NA Intergenic Intergenic -499147 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 213.333-28 chr3 44810959 44811120 + 1.33333 NA exon (NM_020242, exon 17 of 35).2 exon (NM_020242, exon 17 of 35).2 49245 NM_020242 56992 Hs.658939 NM_020242 ENSG00000163808 KIF15 HKLP2|KLP2|KNSL7|NY-BR-62 kinesin family member 15 protein-coding 392.334 chr3 100287411 100287735 + 1.33333 NA intron (NM_001199198, intron 4 of 18) intron (NM_001199198, intron 4 of 18) 26581 NM_001199198 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 242.333-2 chr10 12862754 12863066 + 1.33333 NA Intergenic L1ME3B|LINE|L1 -137557 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 418.666-2 chr5 34489137 34489566 + 1.33333 NA Intergenic Intergenic -166977 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 207-43 chr6 46354501 46354763 + 1.33333 NA intron (NR_125838, intron 2 of 3) MER5B|DNA|hAT-Charlie -28740 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 205.333-56 chr7 42248149 42248423 + 1.33333 NA Intergenic Intergenic -11077 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 162.166 chr3 191562501 191562693 + 1.33333 NA intron (NR_120606, intron 4 of 6) intron (NR_120606, intron 4 of 6) 101434 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 252.333-13 chr17 61165718 61166160 + 1.33333 NA intron (NM_001330413, intron 23 of 25) MIRb|SINE|MIR 201765 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 292-13 chr7 112725373 112725750 + 1.33333 NA Intergenic L1M4a1|LINE|L1 64832 NM_022484 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 249.333-2 chr11 119478409 119478798 + 1.33333 NA intron (NR_034160, intron 3 of 3) L1ME3G|LINE|L1 -53618 NM_001311162 7070 Hs.644697 NM_006288 ENSG00000154096 THY1 CD90|CDw90 Thy-1 cell surface antigen protein-coding 217.667-33 chr5 53361319 53361656 + 1.33333 NA Intergenic Intergenic -119142 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 244.333-26 chr5 164570478 164570692 + 1.33333 NA Intergenic Intergenic 100306 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 142.666 chr1 186321542 186321724 + 1.33333 NA intron (NM_003292, intron 45 of 50) MIR|SINE|MIR 25360 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 141.333-8 chr10 20284102 20284285 + 1.33333 NA 3' UTR (NM_001282736, exon 13 of 13) 3' UTR (NM_001282736, exon 13 of 13) -267777 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 311-4 chr16 31422766 31423187 + 1.33333 NA intron (NM_001318185, intron 23 of 29) AluJo|SINE|Alu 5384 NM_005205 1339 Hs.250760 NM_005205 ENSG00000156885 COX6A2 COX6AH|COXVIAH cytochrome c oxidase subunit 6A2 protein-coding 349-8 chr8 100659525 100659946 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -10070 NM_152628 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 420.499 chr11 90747347 90747895 + 1.33333 NA intron (NR_104190, intron 3 of 6) L1MB7|LINE|L1 121581 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 270.166-4 chr4 72936536 72936756 + 1.33333 NA Intergenic Intergenic 133070 NM_001297732 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 435-5 chr9 73977832 73978347 + 1.33333 NA Intergenic L1ME4b|LINE|L1 -393442 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 281.5-7 chr4 176039228 176039629 + 1.33333 NA Intergenic L1PA13|LINE|L1 -26413 NM_181265 116966 Hs.532056 NM_170710 ENSG00000150627 WDR17 - WD repeat domain 17 protein-coding 219.666-6 chr5 93867708 93867953 + 1.33333 NA intron (NM_032042, intron 7 of 10) intron (NM_032042, intron 7 of 10) -126230 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 238.166-2 chr5 63413748 63413970 + 1.33333 NA Intergenic Intergenic 548433 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 163.333-37 chr2 4474805 4474957 + 1.33333 NA Intergenic Intergenic 181341 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 294.667-10 chr5 105440620 105441039 + 1.33333 NA Intergenic Intergenic 341355 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 272-7 chr2 185211871 185212189 + 1.33333 NA Intergenic MLT2D|LTR|ERVL -44958 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 177.666 chr1 213933444 213933772 + 1.33333 NA intron (NR_037850, intron 2 of 5) intron (NR_037850, intron 2 of 5) 8859 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 222.5-26 chr6 73702684 73702893 + 1.33333 NA intron (NM_001159588, intron 2 of 31) MIR|SINE|MIR 6585 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 230.667-22 chr5 14823099 14823452 + 1.33333 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 2737 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 360.5-8 chr4 179670911 179671205 + 1.33333 NA Intergenic Intergenic 1488091 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 299.999-2 chr4 93630911 93631318 + 1.33333 NA intron (NM_001286838, intron 13 of 14) MIR|SINE|MIR -197639 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 217-15 chr2 147782533 147782895 + 1.33333 NA Intergenic Intergenic -61803 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 300.666-6 chr7 132453725 132454044 + 1.33333 NA intron (NM_001105543, intron 3 of 3) intron (NM_001105543, intron 3 of 3) 122586 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 161.333 chr1 118629017 118629228 + 1.33333 NA Intergenic LTR33|LTR|ERVL 359221 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 339.667-6 chr8 80730431 80731122 + 1.33333 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 143692 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 243.666-3 chr15 49753277 49753531 + 1.33333 NA Intergenic Intergenic 132356 NM_001144955 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 162.667-23 chr15 77187548 77187809 + 1.33333 NA intron (NM_024776, intron 4 of 7) intron (NM_024776, intron 4 of 7) 37726 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 261.667-7 chr11 28560991 28561333 + 1.33333 NA Intergenic L2c|LINE|L2 -83614 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 136-56 chr4 44087027 44087129 + 1.33333 NA Intergenic L1MB7|LINE|L1 70016 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 212.666-5 chr6 129616270 129616516 + 1.33333 NA intron (NM_033515, intron 6 of 14) intron (NM_033515, intron 6 of 14) 93784 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 348-2 chr11 96097685 96098218 + 1.33333 NA intron (NM_032427, intron 1 of 4) MIR|SINE|MIR -173744 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 266-25 chrUn_KI270442v1 350 739 + 1.33333 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 234.666-2 chr22 25668285 25668573 + 1.33333 NA intron (NM_001362778, intron 5 of 19) intron (NM_001362778, intron 5 of 19) -73759 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 241.667-16 chr2 108091461 108091684 + 1.33333 NA Intergenic L1MA1|LINE|L1 -38817 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 277.5-4 chr16 13244418 13244724 + 1.33333 NA Intergenic Tigger2a|DNA|TcMar-Tigger 342973 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 211.666-3 chr4 66979539 66979792 + 1.33333 NA Intergenic Intergenic 442335 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 267-7 chr3 78275654 78275913 + 1.33333 NA Intergenic Intergenic -226820 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 248-18 chr5 77818469 77818803 + 1.33333 NA Intergenic Intergenic -42275 NM_001297740 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 144.833-64 chr6 70266528 70266679 + 1.33333 NA intron (NM_001851, intron 18 of 37) intron (NM_001851, intron 18 of 37) 16594 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 260.334-4 chr2 33827192 33827465 + 1.33333 NA intron (NR_126403, intron 1 of 5) L1PA4|LINE|L1 -99111 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 193.667-38 chr4 72530761 72530963 + 1.33333 NA intron (NM_014243, intron 3 of 21) (TATATAT)n|Simple_repeat|Simple_repeat 38359 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 132.167-18 chr14 22230172 22230355 + 1.33333 NA Intergenic Intergenic 202490 NR_148363 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 159.667-97 chr8 133365124 133365358 + 1.33333 NA Intergenic MLT1K|LTR|ERVL-MaLR -67937 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 225.333-21 chr3 71502861 71503118 + 1.33333 NA intron (NR_146142, intron 2 of 19) intron (NR_146142, intron 2 of 19) 39100 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 272.666 chr12 44381791 44381998 + 1.33333 NA intron (NM_001286213, intron 6 of 6) intron (NM_001286213, intron 6 of 6) 493767 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 127.333-71 chr22 25855021 25855144 + 1.33333 NA intron (NM_001318245, intron 21 of 43) L1PA13|LINE|L1 112894 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 238-12 chr2 135598662 135598937 + 1.33333 NA intron (NM_001282798, intron 1 of 25) intron (NM_001282798, intron 1 of 25) 12447 NM_001282798 23518 Hs.412462 NM_015361 ENSG00000048991 R3HDM1 R3HDM R3H domain containing 1 protein-coding 294.166 chr18 991882 992251 + 1.33333 NA Intergenic L3|LINE|CR1 -64073 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 132-8 chr1 187920906 187921038 + 1.33333 NA Intergenic Intergenic 477344 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 191.166 chr3 49996443 49996707 + 1.33333 NA intron (NM_001349190, intron 4 of 18) intron (NM_001349190, intron 4 of 18) 56425 NM_001167582 10180 Hs.696735 NM_005777 ENSG00000004534 RBM6 3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16 RNA binding motif protein 6 protein-coding 269.333-3 chr11 88165493 88165799 + 1.33333 NA intron (NM_022337, intron 1 of 2) intron (NM_022337, intron 1 of 2) 9797 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 160.666-4 chr15 69584497 69584788 + 1.33333 NA Intergenic Intergenic -7558 NR_126438 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 217.166-3 chr12 23102198 23102480 + 1.33333 NA Intergenic Intergenic -73297 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 286.666-2 chr4 62463273 62463606 + 1.33333 NA Intergenic Charlie10|DNA|hAT-Charlie -301674 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 153.333-32 chr18 45818000 45818158 + 1.33333 NA Intergenic L1ME4b|LINE|L1 -7596 NM_213602 284266 Hs.287692 NM_213602 ENSG00000197046 SIGLEC15 CD33L3|HsT1361|SIGLEC-15 sialic acid binding Ig like lectin 15 protein-coding 217.5-5 chr12 12435252 12435438 + 1.33333 NA intron (NM_001300742, intron 2 of 3).2 MIRb|SINE|MIR 78267 NM_058169 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 200-50 chr3 171750772 171750963 + 1.33333 NA intron (NM_002662, intron 1 of 26) intron (NM_002662, intron 1 of 26) 59616 NM_001130081 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 178.166-5 chr5 19062097 19062346 + 1.33333 NA Intergenic L1MEd|LINE|L1 824051 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 173.5-34 chr3 3524217 3524388 + 1.33333 NA Intergenic Intergenic -275129 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 275.999-2 chr14 40586228 40586606 + 1.33333 NA Intergenic L1ME2|LINE|L1 -368294 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 240-7 chr12 27248387 27248661 + 1.33333 NA intron (NM_015000, intron 1 of 13) intron (NM_015000, intron 1 of 13) 4238 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 316.333-11 chr8 81037345 81037797 + 1.33333 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 74497 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 277-5 chr15 71189043 71189556 + 1.33333 NA promoter-TSS (NR_120348) promoter-TSS (NR_120348) -240 NR_120348 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 262.333-16 chr20 10804220 10804481 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR 51260 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 314.5-3 chr1 195522323 195522768 + 1.33333 NA Intergenic L1PA17|LINE|L1 566170 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 142.333-41 chr17 64408676 64408819 + 1.33333 NA Intergenic MIR|SINE|MIR -17887 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 211-15 chr14 24972478 24972816 + 1.33333 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 76353 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 177.333-25 chr16 23155327 23155511 + 1.33333 NA Intergenic MLT1N2|LTR|ERVL-MaLR -6149 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 136.666 chr11 27236935 27237146 + 1.33333 NA Intergenic Charlie1a|DNA|hAT-Charlie -16927 NR_125766 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 294.999 chr11 34264304 34264648 + 1.33333 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 93534 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 275.333-15 chr2 125107267 125107553 + 1.33333 NA Intergenic L1MA7|LINE|L1 1010575 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 176.166 chr10 64257550 64257778 + 1.33333 NA Intergenic MIR|SINE|MIR -567864 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 181.833-58 chrX 122525649 122525837 + 1.33333 NA Intergenic L1PA3|LINE|L1 -658500 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 457 chr4 30787195 30787671 + 1.33333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 67064 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 307.333-10 chr7 122901022 122901363 + 1.33333 NA Intergenic Intergenic -14433 NM_001167940 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 163.333-9 chr10 29513621 29513774 + 1.33333 NA intron (NM_001323599, intron 17 of 38) intron (NM_001323599, intron 17 of 38) 31400 NR_030335 693189 NR_030335 ENSG00000207612 MIR604 MIRN604|hsa-mir-604 microRNA 604 ncRNA 178-63 chr8 33280961 33281131 + 1.33333 NA Intergenic L1PREC2|LINE|L1 192100 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 315.333-8 chr4 71302539 71303000 + 1.33333 NA intron (NM_001098484, intron 3 of 25) intron (NM_001098484, intron 3 of 25) -36284 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 225.167-10 chr16 84781221 84781657 + 1.33333 NA Intergenic Intergenic -38546 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 384.999 chr12 47926519 47926992 + 1.33333 NA Intergenic Intergenic -21724 NM_001364085 7421 Hs.524368 NM_000376 ENSG00000111424 VDR NR1I1|PPP1R163 vitamin D receptor protein-coding 311.833-2 chr11 39963950 39964346 + 1.33333 NA Intergenic Intergenic 328982 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 260.833-10 chr22 28235508 28235706 + 1.33333 NA intron (NM_001145418, intron 5 of 22) L1M5|LINE|L1 -224262 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 173.5-28 chr18 7854391 7854731 + 1.33333 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 287245 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 215.333-26 chr2 146007988 146008270 + 1.33333 NA Intergenic MIRb|SINE|MIR -578928 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 371.5 chr12 78590216 78590573 + 1.33333 NA Intergenic Intergenic -230648 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 168.5-51 chr5 55986424 55986610 + 1.33333 NA intron (NR_157112, intron 1 of 17) L1MEc|LINE|L1 8446 NR_157112 3572 Hs.532082 NM_002184 ENSG00000134352 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 338.333-4 chr20 48750349 48750720 + 1.33333 NA intron (NM_020820, intron 1 of 39) L2b|LINE|L2 77465 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 128.667-31 chr12 28143343 28143468 + 1.33333 NA Intergenic Intergenic -47051 NM_001352079 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 219.666-8 chr9 24821304 24821546 + 1.33333 NA Intergenic Intergenic -275528 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 115.166 chr4 75638584 75638805 + 1.33333 NA Intergenic Intergenic -8166 NM_003948 8999 Hs.591698 NM_003948 ENSG00000138769 CDKL2 KKIAMRE|P56 cyclin dependent kinase like 2 protein-coding 209.5-18 chr18 65808439 65808743 + 1.33333 NA intron (NM_001362438, intron 2 of 11) intron (NM_001362438, intron 2 of 11) 57579 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 401.333 chr1 191365492 191365901 + 1.33333 NA Intergenic L1M1|LINE|L1 -137198 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 378.833-7 chr9 37273640 37274255 + 1.33333 NA intron (NM_001289120, intron 2 of 8) L1ME3G|LINE|L1 -148749 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 339-5 chr3 160413483 160414054 + 1.33333 NA intron (NM_001002800, intron 8 of 23) intron (NM_001002800, intron 8 of 23) 9023 NR_029525 406951 NR_029525 ENSG00000198987 MIR16-2 MIRN16-2|mir-16-2|mir-16-3 microRNA 16-2 ncRNA 331.333-4 chr14 90911210 90911491 + 1.33333 NA intron (NM_001322227, intron 8 of 17) Tigger20a|DNA|TcMar-Tigger -94920 NM_001010854 145567 Hs.655697 NM_001010854 ENSG00000165914 TTC7B TTC7L1|c14_5685 tetratricopeptide repeat domain 7B protein-coding 203.833-10 chr18 391611 391785 + 1.33333 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 109003 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 161.833-28 chr3 16649763 16649934 + 1.33333 NA Intergenic MER31-int|LTR|ERV1 -44425 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 371.5-3 chr3 27978798 27979232 + 1.33333 NA Intergenic L1MD1|LINE|L1 -144879 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 129.666 chr15 65892642 65892750 + 1.33333 NA TTS (NM_001206836) TTS (NM_001206836) 23205 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 165.5-11 chr11 68982510 68982795 + 1.33333 NA Intergenic L1ME2z|LINE|L1 -1666 NM_198923 116512 Hs.527802 NM_198923 ENSG00000172938 MRGPRD MRGD|TGR7 MAS related GPR family member D protein-coding 340.5-3 chr18_GL383571v1_alt 35861 36249 + 1.33333 NA Intergenic MLT1G1|LTR|ERVL-MaLR 126392 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 299.5-2 chr10 109230635 109231561 + 1.33333 NA Intergenic MER92A|LTR|ERV1 692148 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 266-12 chr2 37300819 37301253 + 1.33333 NA intron (NM_005813, intron 1 of 17) L1ME4b|LINE|L1 16048 NM_005813 23683 Hs.660757 NM_005813 ENSG00000115825 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 302.833-9 chr8 78984711 78985119 + 1.33333 NA Intergenic L1MA8|LINE|L1 147386 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 142.833-43 chr21 30222129 30222309 + 1.33333 NA Intergenic Intergenic -6122 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 181-41 chr22 32614598 32614885 + 1.33333 NA intron (NM_003490, intron 6 of 13) MIRc|SINE|MIR 139504 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 191.333-2 chr10 58775923 58776100 + 1.33333 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 60996 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 238.333-28 chr8 85526563 85526810 + 1.33333 NA Intergenic AluSx1|SINE|Alu -61771 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 271.833-3 chr10 28516648 28516997 + 1.33333 NA Intergenic L1MB5|LINE|L1 15532 NR_033805 220906 Hs.403253 NR_033805 WAC-AS1 - WAC antisense RNA 1 (head to head) ncRNA 194.666 chr1 68253514 68253679 + 1.33333 NA Intergenic L1MD|LINE|L1 -21050 NM_001002292 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 197.666-4 chr20 54151387 54151743 + 1.33333 NA Intergenic AluSc8|SINE|Alu 22421 NM_001128915 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 226.333-36 chr6 14767506 14767806 + 1.33333 NA Intergenic Intergenic -478413 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 306.667-7 chr6 38738903 38739333 + 1.33333 NA intron (NM_001371, intron 6 of 91) intron (NM_001371, intron 6 of 91) 23807 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 267.167-18 chr5 74738100 74738449 + 1.33333 NA intron (NR_104006, intron 14 of 19) intron (NR_104006, intron 14 of 19) 28843 NM_001281302 84340 Hs.277154 NM_032380 ENSG00000164347 GFM2 EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 G elongation factor mitochondrial 2 protein-coding 362.166 chr6 52454335 52454803 + 1.33333 NA intron (NR_033327, intron 4 of 9) intron (NR_033327, intron 4 of 9) 33561 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 238.333-12 chr13 24064877 24065111 + 1.33333 NA intron (NM_001286792, intron 3 of 14) L1MD3|LINE|L1 85192 NM_001286792 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 243.167-16 chr7 54168903 54169142 + 1.33333 NA Intergenic L1MEd|LINE|L1 -161675 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 324.833-3 chr8 56943501 56943797 + 1.33333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 50218 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 229.166 chr4 46536158 46536375 + 1.33333 NA Intergenic Intergenic -146138 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 145-33 chr17 4331895 4332138 + 1.33333 NA intron (NM_003342, intron 1 of 5) HAL1|LINE|L1 34658 NM_003342 7326 Hs.741319 NM_003342 ENSG00000132388 UBE2G1 E217K|UBC7|UBE2G ubiquitin conjugating enzyme E2 G1 protein-coding 238.666-6 chr8 105108147 105108397 + 1.33333 NA Intergenic MIRc|SINE|MIR -210166 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 332-2 chr12 87385652 87386011 + 1.33333 NA Intergenic MER65-int|LTR|ERV1 55092 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 466.666 chr7 150531578 150532120 + 1.33333 NA Intergenic L1PA14|LINE|L1 16977 NM_153236 168537 Hs.647074 NM_153236 ENSG00000179144 GIMAP7 IAN7|hIAN7 GTPase, IMAP family member 7 protein-coding 276.666-3 chr10 71343515 71343859 + 1.33333 NA intron (NR_033414, intron 2 of 3) AluJr4|SINE|Alu 24428 NM_018344 55315 Hs.438419 NM_018344 ENSG00000198246 SLC29A3 ENT3|HCLAP|HJCD|PHID solute carrier family 29 member 3 protein-coding 168.166 chr11 94927508 94927683 + 1.33333 NA Intergenic Intergenic 45961 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 233.666-4 chr18 7528387 7528595 + 1.33333 NA Intergenic Intergenic -38825 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 193.833-8 chr10 93375332 93375603 + 1.33333 NA intron (NM_013451, intron 22 of 53) intron (NM_013451, intron 22 of 53) 106867 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 247.167-17 chr4 42268378 42268715 + 1.33333 NA Intergenic MER117|DNA|hAT-Charlie -115891 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 211.166-2 chr18 6317175 6317385 + 1.33333 NA intron (NM_001365765, intron 1 of 18) L1PB3|LINE|L1 41750 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 142.833-32 chr18 8966915 8967063 + 1.33333 NA Intergenic L1MB3|LINE|L1 -135710 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 176-14 chr17 75396590 75396773 + 1.33333 NA intron (NM_002086, intron 1 of 5) FLAM_C|SINE|Alu 8997 NM_002086 2885 Hs.444356 NM_002086 ENSG00000177885 GRB2 ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2 growth factor receptor bound protein 2 protein-coding 226.5-8 chr10 19219576 19220246 + 1.33333 NA intron (NM_001142308, intron 18 of 39) intron (NM_001142308, intron 18 of 39) 171110 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 151.333-9 chr10 56394512 56394752 + 1.33333 NA Intergenic Intergenic -33359 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 280.333-4 chr10 123056714 123057137 + 1.33333 NA 3' UTR (NM_001330174, exon 10 of 10) 3' UTR (NM_001330174, exon 10 of 10) 47919 NM_001330174 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase short/branched chain protein-coding 216.667-25 chr20 14950113 14950392 + 1.33333 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -20734 NR_072988 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 398.332-2 chr7 112872182 112872587 + 1.33333 NA intron (NM_152556, intron 3 of 4) L1PA17|LINE|L1 67491 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 299.667-14 chr8 72183232 72183695 + 1.33333 NA Intergenic Intergenic 68171 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 180.167-21 chr17 61646734 61647110 + 1.33333 NA Intergenic Intergenic -55703 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 330.833-2 chr5 44855403 44856052 + 1.33333 NA Intergenic AluJr|SINE|Alu 46780 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 198.5-17 chr17 31193233 31193553 + 1.33333 NA intron (NM_001042492, intron 8 of 57) FLAM_A|SINE|Alu 98416 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 127.5-47 chr3 137791375 137791514 + 1.33333 NA Intergenic L1ME4a|LINE|L1 19533 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 322.833-5 chr6 102744995 102745580 + 1.33333 NA Intergenic Intergenic 1346302 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 113.5-29 chr12 75034664 75034832 + 1.33333 NA Intergenic ERVL-B4-int|LTR|ERVL 175000 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 149.5-6 chr1 165379818 165380062 + 1.33333 NA Intergenic Intergenic -23225 NM_177398 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 217.833-2 chr10 85941250 85941417 + 1.33333 NA intron (NM_017551, intron 4 of 15) L1ME4a|LINE|L1 323455 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 261.666-2 chr8 86687161 86687407 + 1.33333 NA intron (NM_019098, intron 3 of 17) L1MB5|LINE|L1 56391 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 128-83 chr7 4537092 4537196 + 1.33333 NA Intergenic Intergenic -145151 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 264.666-3 chr2 164202390 164202648 + 1.33333 NA Intergenic Intergenic 365976 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 177-42 chr21 30399967 30400164 + 1.33333 NA Intergenic Intergenic 4034 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 128-14 chr10 82341941 82342085 + 1.33333 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -109093 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 277-19 chr8 131078666 131079018 + 1.33333 NA Intergenic MIR|SINE|MIR -37933 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 220-3 chr10 120644853 120645117 + 1.33333 NA Intergenic Intergenic 47036 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 281.333-4 chr16 63788644 63788947 + 1.33333 NA Intergenic MER66-int|LTR|ERV1 1333268 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 241.833-13 chr4 170637388 170637821 + 1.33333 NA Intergenic L1ME3B|LINE|L1 106131 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 121.666 chr8 82216072 82216187 + 1.33333 NA Intergenic L2b|LINE|L2 -373843 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 233.666 chr1 211378096 211378350 + 1.33333 NA Intergenic L2a|LINE|L2 -4532 NR_026761 84791 Hs.523932 NM_032705 LINC00467 C1orf97 long intergenic non-protein coding RNA 467 ncRNA 321.667-4 chr14 77548233 77548649 + 1.33333 NA intron (NM_004863, intron 9 of 11) intron (NM_004863, intron 9 of 11) -49625 NM_182509 145501 Hs.29742 NM_182509 ENSG00000100593 ISM2 TAIL1|THSD3 isthmin 2 protein-coding 150.666-4 chr4 49058525 49058684 + 1.33333 NA intron (NM_001286791, intron 15 of 15) L1MA8|LINE|L1 71962 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 151.333-12 chr10 98210256 98210478 + 1.33333 NA intron (NM_001256620, intron 4 of 8) intron (NM_001256620, intron 4 of 8) 57827 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 261.5-16 chr4 36605984 36606334 + 1.33333 NA intron (NR_149124, intron 2 of 4) L1M2|LINE|L1 35741 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 192-10 chr11 81960645 81960910 + 1.33333 NA intron (NR_120571, intron 6 of 7) L1M6|LINE|L1 -69941 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 292.666-3 chr7 94122269 94122668 + 1.33333 NA Intergenic L2c|LINE|L2 -118113 NR_133909 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 289.333 chr10 64768248 64768576 + 1.33333 NA Intergenic MamRep1151|LTR?|LTR? -57116 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 262.333-28 chr7 111238354 111238756 + 1.33333 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 147428 NM_018334 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 246.333-19 chr5 102995737 102995971 + 1.33333 NA intron (NM_001364590, intron 17 of 25) intron (NM_001364590, intron 17 of 25) 124284 NM_001317954 54826 Hs.24088 NM_017676 ENSG00000145723 GIN1 GIN-1|TGIN1|ZH2C2 gypsy retrotransposon integrase 1 protein-coding 235.666-3 chr6 45434617 45434802 + 1.33333 NA intron (NM_001015051, intron 4 of 7) intron (NM_001015051, intron 4 of 7) 12434 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 192.5-47 chr7 96106497 96106832 + 1.33333 NA intron (NM_001278422, intron 15 of 15) L1M4|LINE|L1 113092 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 269.333-11 chr3 158445824 158446109 + 1.33333 NA intron (NM_001271838, intron 6 of 9) intron (NM_001271838, intron 6 of 9) -80742 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 312.667-5 chr22 28082674 28083064 + 1.33333 NA intron (NM_001145418, intron 12 of 22) L1MB2|LINE|L1 -162257 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 340.333-3 chr10 108393871 108394320 + 1.33333 NA Intergenic Intergenic -324802 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 355.5-6 chr5 174004961 174005373 + 1.33333 NA 3' UTR (NM_001144954, exon 5 of 5) 3' UTR (NM_001144954, exon 5 of 5) 15997 NM_001144954 133491 Hs.131469 NM_001144954 ENSG00000185056 C5orf47 - chromosome 5 open reading frame 47 protein-coding 272.5-18 chr6 156479123 156479654 + 1.33333 NA Intergenic L1ME3Cz|LINE|L1 100638 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 252.666 chr12 83162873 83163209 + 1.33333 NA Intergenic L2a|LINE|L2 475886 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 305.334-5 chr5 113386296 113386857 + 1.33333 NA intron (NM_001085377, intron 1 of 18) intron (NM_001085377, intron 1 of 18) 48413 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 254.834-8 chr5 64890865 64891080 + 1.33333 NA intron (NM_005869, intron 11 of 13) intron (NM_005869, intron 11 of 13) 122042 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 238.666-7 chrX 53685637 53685847 + 1.33333 NA intron (NM_031407, intron 2 of 83) L1ME3G|LINE|L1 977 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 137.166 chr11 24773736 24773869 + 1.33333 NA intron (NM_001252010, intron 5 of 9) LTR43|LTR|ERV1 276749 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 172.333-63 chr5 82619947 82620128 + 1.33333 NA Intergenic L1MCa|LINE|L1 -220118 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 282.666-5 chr6 148943044 148943373 + 1.33333 NA intron (NM_005715, intron 3 of 7) intron (NM_005715, intron 3 of 7) 21476 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 163.666-3 chr7 77583653 77583834 + 1.33333 NA intron (NM_001131008, intron 4 of 17) intron (NM_001131008, intron 4 of 17) 45700 NM_001131009 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 285.833-7 chr3 184058605 184059014 + 1.33333 NA intron (NM_130770, intron 6 of 8) AluSg|SINE|Alu 5762 NM_130770 170572 Hs.632579 NM_130770 ENSG00000178084 HTR3C - 5-hydroxytryptamine receptor 3C protein-coding 203.5-28 chr3 27752515 27752794 + 1.33333 NA Intergenic HAL1|LINE|L1 -29939 NM_001278183 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 444.499 chr6 111901774 111902305 + 1.33333 NA intron (NR_149099, intron 1 of 2) L1MC3|LINE|L1 7358 NR_149099 105377946 NR_149099 LINC02527 - long intergenic non-protein coding RNA 2527 ncRNA 193.666 chr12 87237842 87238079 + 1.33333 NA Intergenic L1PA17|LINE|L1 -92779 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 221.167-9 chr15 41063841 41064171 + 1.33333 NA intron (NM_017553, intron 14 of 35) L1MEg|LINE|L1 52240 NR_104038 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1 INO80 complex ATPase subunit protein-coding 262-25 chr7 126383697 126384067 + 1.33333 NA Intergenic L1M5|LINE|L1 674302 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 413.334 chr6 69633096 69633531 + 1.33333 NA Intergenic Intergenic 163153 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 325.667-8 chr3 112099220 112099628 + 1.33333 NA intron (NM_024616, intron 2 of 5) MIR3|SINE|MIR 13089 NM_024616 79669 Hs.434247 NM_024616 ENSG00000114529 C3orf52 TTMP chromosome 3 open reading frame 52 protein-coding 139.666 chr1 41441082 41441266 + 1.33333 NA Intergenic Intergenic 43509 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 329.999 chr9 111400502 111400802 + 1.33333 NA intron (NM_001363756, intron 23 of 48) L1MA4|LINE|L1 -70428 NM_205859 26248 Hs.381312 NM_205859 ENSG00000171133 OR2K2 HSHTPCRH06|HTPCRH06|OR2AN1P|OR2AR1P olfactory receptor family 2 subfamily K member 2 protein-coding 350-2 chr14 56703679 56704080 + 1.33333 NA Intergenic Intergenic 101788 NM_172337 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 160.666-5 chr4 49089901 49090043 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr 103330 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 151.166 chr8 138388368 138388530 + 1.33333 NA intron (NM_001362965, intron 1 of 19) L1MC1|LINE|L1 108812 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 285.333-14 chr5 8031480 8031939 + 1.33333 NA Intergenic L1MDa|LINE|L1 162561 NR_157171 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 250.999 chr2 149193184 149193483 + 1.33333 NA intron (NM_001317002, intron 4 of 7) intron (NM_001317002, intron 4 of 7) 75159 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 126.167-27 chr16 52154568 52154724 + 1.33333 NA Intergenic L1PA5|LINE|L1 69365 NR_104655 102467079 Hs.98466 NR_104655 ENSG00000261749 LINC02180 - long intergenic non-protein coding RNA 2180 ncRNA 266.667-14 chr3 169656404 169656800 + 1.33333 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) 7110 NM_001366466 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 305.833-7 chr7 41332231 41332938 + 1.33333 NA Intergenic L1MC4a|LINE|L1 230980 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 158.833-53 chr5 99694287 99694475 + 1.33333 NA Intergenic Intergenic 160391 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 221.667-24 chr4 90985372 90985554 + 1.33333 NA intron (NM_001145065, intron 9 of 10) MIRb|SINE|MIR 750432 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 176.167-11 chr12 62370635 62370879 + 1.33333 NA intron (NR_147080, intron 6 of 19) L2a|LINE|L2 -96069 NM_001278469 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 209.5-14 chr17 43201751 43201995 + 1.33333 NA intron (NM_001291572, intron 17 of 17) intron (NM_001291572, intron 17 of 17) -10002 NM_001291588 113277 Hs.536474 NM_145041 ENSG00000184988 TMEM106A - transmembrane protein 106A protein-coding 236.5-33 chr8 131179716 131180248 + 1.33333 NA Intergenic Intergenic -139073 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 158.833-52 chr5 49667074 49667425 + 1.33333 NA Intergenic (CATTC)n|Satellite|Satellite 774039 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 166.167-5 chr10 19813544 19813783 + 1.33333 NA Intergenic Intergenic -2769 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 305.333-12 chr5 92125422 92125777 + 1.33333 NA Intergenic LTR80A|LTR|ERVL -742282 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 281.333-2 chr15 39864783 39865086 + 1.33333 NA intron (NM_001271854, intron 1 of 3) L1PB4|LINE|L1 -35658 NM_001271855 11245 Hs.37196 NM_007223 ENSG00000166073 GPR176 HB-954 G protein-coupled receptor 176 protein-coding 158-10 chr11 57331318 57331521 + 1.33333 NA intron (NM_003146, intron 9 of 16) intron (NM_003146, intron 9 of 16) 4473 NM_003146 6749 Hs.523680 NM_003146 ENSG00000149136 SSRP1 FACT|FACT80|T160 structure specific recognition protein 1 protein-coding 194.666-2 chr11 59483266 59483463 + 1.33333 NA Intergenic Intergenic 5934 NM_001004705 390197 Hs.553756 NM_001004705 ENSG00000254466 OR4D10 OR11-251|OR4D10P|OST711 olfactory receptor family 4 subfamily D member 10 protein-coding 182-5 chr10 60785421 60785690 + 1.33333 NA intron (NM_033379, intron 3 of 6) intron (NM_033379, intron 3 of 6) 7077 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 317.666 chr5 66160785 66161107 + 1.33333 NA intron (NM_139168, intron 4 of 12) intron (NM_139168, intron 4 of 12) 16111 NM_139168 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 113.166 chr2 40794252 40794346 + 1.33333 NA Intergenic Intergenic -281864 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 318.333-6 chr9 30101605 30101999 + 1.33333 NA Intergenic Tigger2a|DNA|TcMar-Tigger 306652 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 228.666-2 chr3 4750157 4750350 + 1.33333 NA intron (NR_004428, intron 1 of 1) intron (NR_004428, intron 1 of 1) 1337 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 131.333-68 chr3 57995709 57995880 + 1.33333 NA Intergenic MamTip3|DNA|hAT-Tip100 -12628 NM_001164318 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 181.166-2 chr7 43195955 43196176 + 1.33333 NA intron (NM_015052, intron 2 of 29) MER41E|LTR|ERV1 45170 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 156-72 chr5 120629720 120629991 + 1.33333 NA intron (NM_001308088, intron 3 of 3) L1MEd|LINE|L1 98391 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 148.167-3 chr1 106525938 106526126 + 1.33333 NA Intergenic Intergenic -292207 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 126-100 chr9 72922901 72923048 + 1.33333 NA intron (NM_000689, intron 7 of 12) intron (NM_000689, intron 7 of 12) 30079 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 172.833-12 chr14 60569157 60569310 + 1.33333 NA Intergenic L1MEj|LINE|L1 60087 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 231-7 chr14 62964576 62964780 + 1.33333 NA intron (NM_139318, intron 6 of 10) MER67D|LTR|ERV1 80780 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 227.667-4 chr10 59193263 59193639 + 1.33333 NA intron (NM_001143774, intron 1 of 4) intron (NM_001143774, intron 1 of 4) 15984 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 278.666-3 chr5 22938249 22938567 + 1.33333 NA Intergenic Looper|DNA|PiggyBac -85064 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 184.666-3 chr20 50108251 50108417 + 1.33333 NA intron (NM_001257399, intron 1 of 4) L2a|LINE|L2 4816 NM_001282577 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 209.833-4 chr10 83044054 83044228 + 1.33333 NA Intergenic Intergenic 632948 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 198.666 chr20 1652517 1652791 + 1.33333 NA intron (NM_018556, intron 1 of 5) L1M4c|LINE|L1 5125 NM_080816 55423 Hs.590883 NM_018556 ENSG00000089012 SIRPG CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1 signal regulatory protein gamma protein-coding 168-47 chr4 65720211 65720425 + 1.33333 NA Intergenic Intergenic -49823 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 247-17 chr7 7168087 7168521 + 1.33333 NA Intergenic Intergenic -14311 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 214-8 chr11 75116489 75116780 + 1.33333 NA Intergenic MLT2B3|LTR|ERVL -19744 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 352.667-7 chr5 18683727 18684225 + 1.33333 NA Intergenic Intergenic 876702 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 233.667 chr10 42522681 42523070 + 1.33333 NA intron (NR_026777, intron 7 of 7) L1ME3|LINE|L1 29995 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 149.333-82 chr6 74972240 74972393 + 1.33333 NA Intergenic Intergenic 156466 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 213.333-11 chr12 121342752 121342936 + 1.33333 NA intron (NM_001137559, intron 4 of 16) AluSc|SINE|Alu 9567 NM_001330489 51433 Hs.7101 NM_016237 ENSG00000089053 ANAPC5 APC5 anaphase promoting complex subunit 5 protein-coding 334 chr1 86125430 86125818 + 1.33333 NA non-coding (NR_146343, exon 3 of 60) non-coding (NR_146343, exon 3 of 60) 30847 NM_001349955 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 134.833-56 chr6 39248592 39248789 + 1.33333 NA Intergenic MSTC|LTR|ERVL-MaLR -19215 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 270.833-10 chr18 80103273 80103604 + 1.33333 NA Intergenic MER89-int|LTR|ERV1 -5824 NM_014913 22850 Hs.131915 NM_014913 ENSG00000101544 ADNP2 ZNF508 ADNP homeobox 2 protein-coding 218-47 chr8 137804420 137804889 + 1.33333 NA Intergenic AluJo|SINE|Alu 278891 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 318-9 chr8 122406485 122406956 + 1.33333 NA Intergenic Intergenic 161924 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 174.333-64 chr8 83389979 83390139 + 1.33333 NA Intergenic L1MC3|LINE|L1 -13699 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 260.666 chr1 185189429 185189776 + 1.33333 NA intron (NM_017673, intron 9 of 18) intron (NM_017673, intron 9 of 18) 32435 NM_017673 54823 Hs.134183 NM_017673 ENSG00000116668 SWT1 C1orf26|HsSwt1 SWT1 RNA endoribonuclease homolog protein-coding 235.333-3 chr12 88396332 88396734 + 1.33333 NA Intergenic L1PB4|LINE|L1 183938 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 266.5-6 chr14 70697100 70697405 + 1.33333 NA Intergenic MIRb|SINE|MIR -1446 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 339.667 chr10 65579229 65579696 + 1.33333 NA intron (NR_120647, intron 2 of 5) intron (NR_120647, intron 2 of 5) 8037 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 284.666-4 chr5 31435644 31436033 + 1.33333 NA exon (NM_001100412, exon 24 of 35) exon (NM_001100412, exon 24 of 35) 96255 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 300.667-9 chr3 131102889 131103264 + 1.33333 NA intron (NM_001353034, intron 5 of 18) L1P4a|LINE|L1 75348 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 154.333-52 chr3 118121038 118121182 + 1.33333 NA Intergenic L1ME3B|LINE|L1 -430185 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 190-25 chr2 28630154 28630467 + 1.33333 NA intron (NR_138141, intron 31 of 35) intron (NR_138141, intron 31 of 35) 63953 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 319.167 chr1 172968666 172969176 + 1.33333 NA Intergenic L1MC5|LINE|L1 82042 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 147-2 chr1 69060729 69060880 + 1.33333 NA intron (NR_146608, intron 1 of 4) intron (NR_146608, intron 1 of 4) 4906 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 314.333-4 chr22 23702482 23702786 + 1.33333 NA intron (NR_024448, intron 6 of 11) L1PA16|LINE|L1 6218 NM_001329425 266747 Hs.658997 NM_153615 ENSG00000159496 RGL4 Rgr ral guanine nucleotide dissociation stimulator like 4 protein-coding 207-36 chr3 184152361 184152626 + 1.33333 NA Intergenic HAL1|LINE|L1 -2884 NM_004423 1857 Hs.388116 NM_004423 ENSG00000161202 DVL3 DRS3 dishevelled segment polarity protein 3 protein-coding 436.833 chrUn_GL000216v2 124 861 + 1.33333 NA NA (ATTCC)n|Simple_repeat|Simple_repeat NA NA 227.166 chr14 68773793 68774052 + 1.33333 NA Intergenic Intergenic 19992 NM_001244698 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 313-7 chr7 46962999 46963406 + 1.33333 NA Intergenic L1PA17|LINE|L1 -266080 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 235.333-18 chr3 179303272 179303503 + 1.33333 NA Intergenic L1MD2|LINE|L1 -19644 NM_001303426 51193 Hs.632578 NM_016331 ENSG00000121864 ZNF639 ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 267.666-4 chr8 111919720 111919959 + 1.33333 NA Intergenic Intergenic 543200 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 271.333-2 chr1 108830928 108831260 + 1.33333 NA intron (NR_049760, intron 8 of 13) intron (NR_049760, intron 8 of 13) 26000 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 172.5-65 chrX 71567187 71567356 + 1.33333 NA intron (NM_181672, intron 19 of 21) intron (NM_181672, intron 19 of 21) -10753 NM_052957 93953 Hs.135167 NM_052957 ENSG00000147174 GCNA ACRC|NAAR1 germ cell nuclear acidic peptidase protein-coding 210.666-3 chr3 62470314 62470532 + 1.33333 NA intron (NM_003716, intron 24 of 29) intron (NM_003716, intron 24 of 29) -96873 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 289.166-2 chr7 128054638 128054985 + 1.33333 NA intron (NM_014390, intron 16 of 23) intron (NM_014390, intron 16 of 23) -23374 NM_022143 64101 Hs.655003 NM_022143 ENSG00000128594 LRRC4 NAG14|NGL-2 leucine rich repeat containing 4 protein-coding 218.333-36 chr8 125886561 125886927 + 1.33333 NA Intergenic Intergenic 64453 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 136.333-29 chr14 62620708 62620977 + 1.33333 NA Intergenic Intergenic 424616 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 126.833-59 chr7 42744506 42744658 + 1.33333 NA Intergenic Intergenic -38135 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 169.5-48 chr4 63114925 63115066 + 1.33333 NA Intergenic L1PA16|LINE|L1 -953230 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 319.667-10 chr3 55027797 55028215 + 1.33333 NA intron (NM_018398, intron 35 of 37) intron (NM_018398, intron 35 of 37) -60904 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 391.832 chr4 134703953 134704246 + 1.33333 NA Intergenic Intergenic 280231 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 340.833-5 chr6 64848886 64849365 + 1.33333 NA intron (NM_001292009, intron 19 of 43) intron (NM_001292009, intron 19 of 43) -452293 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 124.667-53 chr18 5476761 5477035 + 1.33333 NA intron (NM_001281535, intron 5 of 21) intron (NM_001281535, intron 5 of 21) 63658 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 234-2 chr1 97081578 97081905 + 1.33333 NA intron (NM_000110, intron 22 of 22) intron (NM_000110, intron 22 of 22) -14182 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 261.833-18 chr8 90982451 90982822 + 1.33333 NA intron (NM_001190972, intron 1 of 5) intron (NM_001190972, intron 1 of 5) 2441 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 324.666-3 chr8 105600404 105600791 + 1.33333 NA intron (NM_001362837, intron 4 of 7) intron (NM_001362837, intron 4 of 7) 281054 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 446.332 chr12 20746106 20746585 + 1.33333 NA intron (NM_017435, intron 13 of 14) L1MC5|LINE|L1 50880 NM_001145944 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 305-7 chr8 133178048 133178513 + 1.33333 NA Intergenic L1M5|LINE|L1 -12759 NR_037944 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 200-27 chr17 60843742 60843922 + 1.33333 NA intron (NM_001330413, intron 7 of 25) L2a|LINE|L2 165981 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 174.333-39 chr3 100206369 100206645 + 1.33333 NA Intergenic Intergenic 20683 NR_028357 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 190.833-13 chr14 41044501 41045008 + 1.33333 NA intron (NR_109758, intron 3 of 3) L1M5|LINE|L1 90043 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 164.666 chr11 60069554 60069747 + 1.33333 NA exon (NM_001031809, exon 5 of 6) exon (NM_001031809, exon 5 of 6) 12985 NM_006138 932 Hs.99960 NM_006138 ENSG00000149516 MS4A3 CD20L|HTM4 membrane spanning 4-domains A3 protein-coding 270-3 chr13 94590190 94590523 + 1.33333 NA intron (NR_130732, intron 3 of 10) intron (NR_130732, intron 3 of 10) 5796 NR_130731 23483 Hs.12393 NM_014305 ENSG00000088451 TGDS CATMANS|SDR2E1|TDPGD TDP-glucose 4,6-dehydratase protein-coding 176-55 chr9 35931298 35931584 + 1.33333 NA Intergenic Intergenic 21951 NM_001348107 158376 Hs.302677 NM_001348107 ENSG00000235387 SPAAR LINC00961|SPAR small regulatory polypeptide of amino acid response protein-coding 235.833-18 chr6 71263596 71263873 + 1.33333 NA Intergenic MER103C|DNA|hAT-Charlie -25077 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 251-7 chr12 131777578 131777811 + 1.33333 NA intron (NM_004592, intron 13 of 17) L1PA4|LINE|L1 -50699 NM_016155 4326 Hs.709245 NM_016155 ENSG00000198598 MMP17 MMP-17|MT4-MMP|MT4MMP|MTMMP4 matrix metallopeptidase 17 protein-coding 209.834 chr10 7196513 7196761 + 1.33333 NA intron (NM_001029880, intron 15 of 20) L2a|LINE|L2 -9853 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 352.5-3 chr16 12715790 12716165 + 1.33333 NA intron (NM_018340, intron 2 of 3) intron (NM_018340, intron 2 of 3) -4344 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 161.333-77 chr9 31968717 31968969 + 1.33333 NA Intergenic Intergenic -415760 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 133-62 chr4 30830642 30830839 + 1.33333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 110371 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 243.501-3 chr12 24616763 24617269 + 1.33333 NA Intergenic Intergenic -32848 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 271-5 chr2 102895356 102895798 + 1.33333 NA intron (NR_135562, intron 1 of 3) intron (NR_135562, intron 1 of 3) 145 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 178.666 chr2 194581066 194581254 + 1.33333 NA Intergenic L1MC|LINE|L1 -149435 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 250.666 chr1 214148211 214148423 + 1.33333 NA Intergenic L1ME5|LINE|L1 -132842 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 162.167-36 chr4 115600156 115600405 + 1.33333 NA Intergenic Intergenic -486660 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 344.5-4 chr2 106664942 106665529 + 1.33333 NA Intergenic L1ME3B|LINE|L1 177871 NM_001368307 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 240.833-27 chr8 82382666 82383016 + 1.33333 NA Intergenic Intergenic -529263 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 140.667-48 chr21 16223360 16223577 + 1.33333 NA intron (NR_136543, intron 1 of 4) intron (NR_136543, intron 1 of 4) 29089 NR_027791 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 186.666-3 chr3 95667656 95667833 + 1.33333 NA intron (NR_077228, intron 3 of 4) intron (NR_077228, intron 3 of 4) 15449 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 279.333-13 chr6 49552306 49552649 + 1.33333 NA TTS (NM_001145652) TTS (NM_001145652) 1809 NR_146861 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 148.333-43 chr2 78506651 78506799 + 1.33333 NA Intergenic L1PA15|LINE|L1 -38806 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 156.666-2 chr17 33789772 33789929 + 1.33333 NA intron (NM_001094, intron 1 of 9) Arthur1B|DNA|hAT-Tip100 -256090 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 295.666-4 chr8 80547015 80547457 + 1.33333 NA Intergenic MSTD|LTR|ERVL-MaLR 61010 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 207.333-16 chr14 38615742 38616161 + 1.33333 NA Intergenic Zaphod2|DNA|hAT-Tip100 -266645 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 126-85 chr6 153204128 153204236 + 1.33333 NA Intergenic Intergenic -72900 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 123.333-99 chr7 9600111 9600249 + 1.33333 NA Intergenic L2a|LINE|L2 -34090 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 285.833-11 chr8 133559420 133559744 + 1.33333 NA intron (NM_003033, intron 1 of 8) intron (NM_003033, intron 1 of 8) 12305 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 294.333-8 chr2 54880723 54881303 + 1.33333 NA intron (NM_001039753, intron 16 of 40) intron (NM_001039753, intron 16 of 40) 129259 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 164.166-3 chr7 18099946 18100188 + 1.33333 NA intron (NM_001204144, intron 1 of 12) L1MEc|LINE|L1 13242 NM_001321871 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 116.666-3 chr2 47790277 47790379 + 1.33333 NA intron (NM_001281494, intron 1 of 9) AluSz6|SINE|Alu 6373 NM_001281494 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 164-26 chr2 20891653 20891782 + 1.33333 NA Intergenic L1MB7|LINE|L1 -68587 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 344.5-3 chr16 6734756 6735173 + 1.33333 NA intron (NM_018723, intron 3 of 15) AluJb|SINE|Alu -38845 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 244.333-16 chr3 6063778 6064060 + 1.33333 NA Intergenic L2b|LINE|L2 741530 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 201.666-5 chr6 35122751 35122962 + 1.33333 NA intron (NM_001366329, intron 2 of 7) intron (NM_001366329, intron 2 of 7) 18483 NM_001366330 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 191.167-17 chr21 19219845 19220141 + 1.33333 NA Intergenic Intergenic -460181 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 201.333-4 chr1 173180927 173181274 + 1.33333 NA Intergenic Intergenic 24432 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 186.5-10 chr10 35570884 35571057 + 1.33333 NA 3' UTR (NM_001282852, exon 9 of 9) 3' UTR (NM_001282852, exon 9 of 9) -34371 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 375.333-5 chr5 28085798 28086276 + 1.33333 NA Intergenic Intergenic 201628 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 470.666 chr8 136062702 136063078 + 1.33333 NA Intergenic L1PA16|LINE|L1 -467908 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 259.333-8 chr14 48523585 48523890 + 1.33333 NA Intergenic MamRep137|DNA|TcMar-Tigger -728723 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 152.666-4 chr3 177788636 177788787 + 1.33333 NA Intergenic MER63A|DNA|hAT-Blackjack -28154 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 253.833-7 chr21 18291718 18291969 + 1.33333 NA intron (NM_002772, intron 21 of 24) intron (NM_002772, intron 21 of 24) 45968 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 200.833-21 chr21 28546570 28546845 + 1.33333 NA Intergenic MLT2F|LTR|ERVL 7389 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 140.333-83 chr7 110222710 110222924 + 1.33333 NA Intergenic Intergenic -262604 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 251.333-9 chr15 69915821 69916227 + 1.33333 NA Intergenic Charlie16a|DNA|hAT-Charlie 80790 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 189.666-2 chr9 113643147 113643382 + 1.33333 NA Intergenic L1ME1|LINE|L1 49135 NM_001276262 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 253.166 chr12 23423554 23423935 + 1.33333 NA Intergenic Intergenic 160842 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 162.333-31 chr2 65944867 65945068 + 1.33333 NA Intergenic Intergenic 413361 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 276.666-7 chr8 54474204 54474464 + 1.33333 NA Intergenic MER5B|DNA|hAT-Charlie 16399 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 274.333-12 chr6 64644690 64645055 + 1.33333 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -656546 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 240.334-8 chr7 38438953 38439396 + 1.33333 NA intron (NM_001635, intron 11 of 20) THE1D|LTR|ERVL-MaLR 97597 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 338.166 chr20 34452920 34453438 + 1.33333 NA intron (NM_001257137, intron 13 of 25) intron (NM_001257137, intron 13 of 25) -13146 NR_030374 693229 NR_030374 ENSG00000207997 MIR644A MIR644|MIRN644|hsa-mir-644|hsa-mir-644a microRNA 644a ncRNA 172.5-18 chr13 79194533 79194728 + 1.33333 NA Intergenic Intergenic 211591 NM_001286631 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 164.5-20 chr15 65763129 65763267 + 1.33333 NA intron (NM_005848, intron 1 of 31) MamRTE1|LINE|RTE-BovB 29095 NM_005848 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 235-20 chr21 16666136 16666360 + 1.33333 NA Intergenic Intergenic 76011 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 172.5-16 chr12 26865537 26865776 + 1.33333 NA Intergenic Intergenic -32462 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 241.499 chr17 66091765 66092009 + 1.33333 NA intron (NM_001302891, intron 6 of 24) L1MA8|LINE|L1 100005 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 318.667-2 chr21 28292518 28292957 + 1.33333 NA Intergenic Intergenic -64070 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 160.834-5 chr5 159253580 159253791 + 1.33333 NA Intergenic Intergenic -9605 NM_145049 134510 Hs.591733 NM_145049 ENSG00000164332 UBLCP1 CPUB1 ubiquitin like domain containing CTD phosphatase 1 protein-coding 164-2 chr1 119161595 119161822 + 1.33333 NA intron (NR_125975, intron 4 of 6) FLAM_C|SINE|Alu -21036 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 262.999 chr3 191822432 191822751 + 1.33333 NA Intergenic L1PREC2|LINE|L1 361428 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 348.666-2 chr12 88776544 88776929 + 1.33333 NA Intergenic Intergenic -196263 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 251.167 chr1 156633252 156633616 + 1.33333 NA Intergenic ERVL-E-int|LTR|ERVL -8683 NM_021948 63827 Hs.516904 NM_021948 ENSG00000132692 BCAN BEHAB|CSPG7 brevican protein-coding 319-8 chr4 150822955 150823339 + 1.33333 NA intron (NM_001367550, intron 30 of 56) L1M1|LINE|L1 192120 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 231-8 chr14 86070626 86071037 + 1.33333 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 136153 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 158.333-29 chr14 72235949 72236155 + 1.33333 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -280768 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 250-12 chr2 99608511 99608849 + 1.33333 NA intron (NM_001025108, intron 12 of 23) MER102a|DNA|hAT-Charlie -118663 NM_001321454 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 337.499 chr1 175844037 175844470 + 1.33333 NA Intergenic L2a|LINE|L2 -33090 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 259-17 chr4 40758050 40758394 + 1.33333 NA intron (NM_024677, intron 2 of 11) intron (NM_024677, intron 2 of 11) 8267 NM_024677 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 258-6 chr7 91838439 91838765 + 1.33333 NA Intergenic Intergenic 42100 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 158.333-46 chr20 40039348 40039480 + 1.33333 NA Intergenic Intergenic 34953 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 220.833-16 chr4 59872980 59873475 + 1.33333 NA Intergenic Intergenic 859654 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 366.333-5 chr3 108984582 108984960 + 1.33333 NA exon (NM_014429, exon 23 of 28) exon (NM_014429, exon 23 of 28) -30892 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 118.5-29 chr14 49202915 49203019 + 1.33333 NA Intergenic Intergenic 383413 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 246.666-2 chr11 120413069 120413303 + 1.33333 NA intron (NM_015313, intron 4 of 40) intron (NM_015313, intron 4 of 40) 27859 NM_001301084 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 123.667-91 chr5 121123959 121124138 + 1.33333 NA Intergenic AluJb|SINE|Alu -198502 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 164.667-4 chr1 99906291 99906536 + 1.33333 NA intron (NM_000028, intron 27 of 33) L1MB2|LINE|L1 55438 NM_000646 178 Hs.904 NM_000028 ENSG00000162688 AGL GDE amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase protein-coding 162.667-37 chr2 33850145 33850337 + 1.33333 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -122024 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 232.667-16 chr21 29836898 29837184 + 1.33333 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 88866 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 263-10 chr2 52749534 52749880 + 1.33333 NA Intergenic Intergenic -47092 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 234.333-35 chr9 68720930 68721292 + 1.33333 NA intron (NM_001278253, intron 1 of 13) L2|LINE|L2 15697 NM_001278253 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 122.667-7 chr10 57208159 57208391 + 1.33333 NA Intergenic Intergenic 96284 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 235.5-4 chr10 32934925 32935579 + 1.33333 NA intron (NM_002211, intron 2 of 15) CR1_Mam|LINE|CR1 306 NM_033668 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 173.166-3 chr5 15218386 15218515 + 1.33333 NA intron (NR_109944, intron 2 of 2) intron (NR_109944, intron 2 of 2) 48110 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 204.666-6 chrUn_KI270442v1 169641 169876 + 1.33333 NA NA ALR/Alpha|Satellite|centr NA NA 135.334-2 chr12 27826280 27826456 + 1.33333 NA Intergenic MLT1F1-int|LTR|ERVL-MaLR 46135 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 317.666-2 chr7 94402130 94402611 + 1.33333 NA intron (NM_000089, intron 6 of 51) intron (NM_000089, intron 6 of 51) 7809 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 EDSARTH2|EDSCV|OI4 collagen type I alpha 2 chain protein-coding 180.667-17 chr13 58732948 58733183 + 1.33333 NA Intergenic Ricksha_c|DNA|MULE-MuDR -499948 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 143.334-3 chr2 22918189 22918423 + 1.33333 NA Intergenic Charlie10|DNA|hAT-Charlie 381827 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 257.167-13 chr7 6110399 6110696 + 1.33333 NA intron (NM_032172, intron 1 of 17) intron (NM_032172, intron 1 of 17) 5598 NM_001365764 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 129.667-108 chr8 126919680 126919834 + 1.33333 NA Intergenic L1ME1|LINE|L1 -93397 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 258.166 chr5 111320610 111320908 + 1.33333 NA intron (NM_001744, intron 1 of 10) AluSp|SINE|Alu 96375 NM_001323377 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 254.333-15 chr5 126729597 126729917 + 1.33333 NA Intergenic Intergenic 46729 NR_134485 102723557 Hs.582207 NR_134485 ENSG00000251072 LMNB1-DT - LMNB1 divergent transcript ncRNA 118.333-100 chr6 161017053 161017141 + 1.33333 NA intron (NM_005922, intron 1 of 26) intron (NM_005922, intron 1 of 26) 25328 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 251-11 chr16 54507062 54507255 + 1.33333 NA Intergenic Intergenic -136459 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 126.667-90 chr7 77882884 77883071 + 1.33333 NA intron (NM_001366089, intron 2 of 18) intron (NM_001366089, intron 2 of 18) 42847 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 294.666-2 chr2 166987203 166987498 + 1.33333 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 98863 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 182.167-39 chr8 102072331 102072634 + 1.33333 NA intron (NM_001040624, intron 1 of 7) MADE2|DNA|TcMar-Mariner 51852 NM_001040629 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 316.333-8 chr4 59795313 59795739 + 1.33333 NA Intergenic AluY|SINE|Alu 781953 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 240.666-3 chr2 176435503 176435769 + 1.33333 NA Intergenic Intergenic 165416 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 310.667-9 chr9 95529185 95529660 + 1.33333 NA Intergenic Intergenic -12365 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 315.667-9 chr2 143221758 143222150 + 1.33333 NA intron (NM_018460, intron 4 of 13) intron (NM_018460, intron 4 of 13) 92535 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 158.666-4 chr5 120045642 120045808 + 1.33333 NA Intergenic Intergenic 416166 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 392.5-2 chr8 49098584 49099184 + 1.33333 NA Intergenic HERVIP10F-int|LTR|ERV1 26540 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 162.666-2 chr19 53935052 53935271 + 1.33333 NA intron (NM_031896, intron 3 of 4) intron (NM_031896, intron 3 of 4) 22424 NM_031896 59284 Hs.631597 NM_031896 ENSG00000105605 CACNG7 - calcium voltage-gated channel auxiliary subunit gamma 7 protein-coding 190.334-4 chr8 87350943 87351157 + 1.33333 NA intron (NM_173538, intron 8 of 10) MIR|SINE|MIR 484635 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 238.667-11 chr16 76465584 76465899 + 1.33333 NA intron (NR_136213, intron 9 of 23) intron (NR_136213, intron 9 of 23) 155889 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 152.666-6 chr7 3781566 3781727 + 1.33333 NA intron (NM_152744, intron 4 of 44) L1MA7|LINE|L1 -348039 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 199.333-9 chr14 51724455 51724648 + 1.33333 NA intron (NM_001042481, intron 13 of 14) intron (NM_001042481, intron 13 of 14) 7268 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 353.5-2 chr13 94348308 94348772 + 1.33333 NA intron (NM_005708, intron 6 of 8) L2c|LINE|L2 131142 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 273.333-20 chr5 135067372 135067706 + 1.33333 NA intron (NR_161235, intron 2 of 5) intron (NR_161235, intron 2 of 5) -27492 NR_105050 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 Epist C5orf66 antisense RNA 1 ncRNA 149.666-2 chr11 25603114 25603293 + 1.33333 NA Intergenic Intergenic -585920 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 151.833-41 chr4 71553915 71554071 + 1.33333 NA intron (NM_003759, intron 17 of 22) intron (NM_003759, intron 17 of 22) 214940 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 171.333-28 chr18 44632894 44633059 + 1.33333 NA Intergenic ERVL-E-int|LTR|ERVL -47097 NM_001130110 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 118-109 chr6 153586758 153586897 + 1.33333 NA Intergenic Intergenic -423669 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 271-3 chr16 65677890 65678236 + 1.33333 NA Intergenic Intergenic -101763 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 295.499 chr15 58657666 58657953 + 1.33333 NA intron (NM_001320570, intron 5 of 14) L1MA2|LINE|L1 35798 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 274.666 chr5 130590638 130591027 + 1.33333 NA Intergenic L1MA5|LINE|L1 574424 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 188.5-11 chr11 74372273 74372491 + 1.33333 NA intron (NM_173582, intron 2 of 13) intron (NM_173582, intron 2 of 13) 26051 NM_173582 283209 Hs.26612 NM_173582 ENSG00000165434 PGM2L1 BM32A|PMMLP phosphoglucomutase 2 like 1 protein-coding 296.5-8 chr3 81274476 81275118 + 1.33333 NA Intergenic Intergenic 280929 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 323.333-9 chr5 94221660 94222073 + 1.33333 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -110167 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 244.167-15 chr5 91054860 91055167 + 1.33333 NA intron (NR_003149, intron 85 of 89) intron (NR_003149, intron 85 of 89) 259389 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 188.167-17 chr19 40046626 40046838 + 1.33333 NA intron (NM_001005851, intron 4 of 4) L2a|LINE|L2 9499 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 234.333-27 chr4 158371842 158372218 + 1.33333 NA Intergenic Intergenic -149684 NM_001253727 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 122.666-3 chr2 13096959 13097074 + 1.33333 NA Intergenic Charlie15b|DNA|hAT-Charlie -90003 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 257.333-23 chr8 67228267 67228507 + 1.33333 NA intron (NM_006421, intron 23 of 38) intron (NM_006421, intron 23 of 38) 115394 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 121-18 chr12 1850380 1850488 + 1.33333 NA intron (NM_172364, intron 23 of 37).2 L1MC5|LINE|L1 29869 NM_001039029 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 216.166 chr1 67468327 67468734 + 1.33333 NA Intergenic MamSINE1|SINE|tRNA-RTE -38128 NM_015640 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 221-12 chr14 51858451 51858650 + 1.33333 NA Intergenic Intergenic -2062 NM_053064 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 231.333-34 chr8 120853820 120854135 + 1.33333 NA Intergenic MIR|SINE|MIR -41931 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 318.666-4 chr3 180609293 180609598 + 1.33333 NA 3' UTR (NM_001042601, exon 10 of 10) 3' UTR (NM_001042601, exon 10 of 10) 7282 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 257.166-3 chr3 82148862 82149190 + 1.33333 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 162884 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 396.334 chr17 20229026 20229482 + 1.33333 NA intron (NM_001033553, intron 5 of 14) Tigger17b|DNA|TcMar-Tigger 73182 NM_001243438 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 327.333-12 chr6 51068508 51068883 + 1.33333 NA Intergenic MSTA|LTR|ERVL-MaLR 249824 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 173.667-65 chr8 80975272 80975471 + 1.33333 NA 3' UTR (NM_018440, exon 9 of 9) 3' UTR (NM_018440, exon 9 of 9) -100590 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 189.333-5 chr11 125754783 125755038 + 1.33333 NA Intergenic L1M4c|LINE|L1 8631 NM_138294 160065 Hs.148565 NM_138294 ENSG00000171053 PATE1 PATE prostate and testis expressed 1 protein-coding 200.333-21 chr20 21566971 21567259 + 1.33333 NA Intergenic L1ME3B|LINE|L1 -2909 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 176.333-58 chr8 53505243 53505404 + 1.33333 NA Intergenic AluJb|SINE|Alu 18642 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 327.667-6 chr2 64114671 64114932 + 1.33333 NA intron (NM_020651, intron 1 of 6) MER20|DNA|hAT-Charlie 29619 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 204.333-41 chr4 130294663 130294861 + 1.33333 NA Intergenic MLT1L|LTR|ERVL-MaLR -81599 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 217.667-52 chr9 9202841 9203081 + 1.33333 NA intron (NM_002839, intron 9 of 45) intron (NM_002839, intron 9 of 45) 344943 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 280.833-10 chr8 83735910 83736355 + 1.33333 NA Intergenic Intergenic 332374 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 151.5-52 chr4 34406599 34406846 + 1.33333 NA Intergenic Intergenic -136975 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 221.166 chr2 201546332 201546552 + 1.33333 NA intron (NM_001168221, intron 10 of 15) L1MB8|LINE|L1 72736 NM_152525 151254 Hs.335788 NM_152525 ENSG00000155754 C2CD6 ALS2CR11 C2 calcium dependent domain containing 6 protein-coding 218-37 chr5 41720236 41720454 + 1.33333 NA Intergenic L1MD2|LINE|L1 123312 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 285.167-6 chr20 40312815 40313627 + 1.33333 NA Intergenic Intergenic 308760 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 155.833-18 chr14 71304072 71304188 + 1.33333 NA Intergenic Intergenic -16346 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 243.667-20 chr22 42816076 42816406 + 1.33333 NA intron (NM_001142293, intron 10 of 14) MIR|SINE|MIR 41032 NM_014570 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 186-44 chr5 45051392 45051622 + 1.33333 NA Intergenic MLT1C|LTR|ERVL-MaLR 242560 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 320.833-5 chr3 180680591 180680930 + 1.33333 NA Intergenic L1MC5a|LINE|L1 -1271 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 223.334-4 chr2 9436838 9437023 + 1.33333 NA intron (NM_016207, intron 7 of 17) L1ME4a|LINE|L1 13276 NM_016207 51692 Hs.515972 NM_016207 ENSG00000119203 CPSF3 CPSF-73|CPSF73 cleavage and polyadenylation specific factor 3 protein-coding 310.5-11 chr4 30506304 30506851 + 1.33333 NA Intergenic ERVL-B4-int|LTR|ERVL -213792 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 334.666-2 chr6 45003649 45004247 + 1.33333 NA intron (NM_001261823, intron 4 of 9) intron (NM_001261823, intron 4 of 9) 193822 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 242.167-16 chr4 42722685 42723262 + 1.33333 NA Intergenic L3|LINE|CR1 -65868 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 160.333-45 chr4 66326635 66326833 + 1.33333 NA Intergenic Intergenic 49910 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 195.333-31 chr3 2630496 2630683 + 1.33333 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -261626 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 184.666-2 chr2 161657488 161657738 + 1.33333 NA intron (NM_001354451, intron 1 of 25) intron (NM_001354451, intron 1 of 25) 33197 NM_001354445 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 286.5-11 chr3 100053214 100053588 + 1.33333 NA intron (NM_001042459, intron 1 of 4) MLT1C|LTR|ERVL-MaLR 61112 NM_182909 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 320 chr1 48818043 48818697 + 1.33333 NA intron (NR_136623, intron 5 of 12) intron (NR_136623, intron 5 of 12) -41401 NM_001349795 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 333.834 chr19 15065828 15066458 + 1.33333 NA Intergenic L1MB4|LINE|L1 16663 NM_012114 23581 Hs.466057 NM_012114 ENSG00000105141 CASP14 ARCI12 caspase 14 protein-coding 174.167-19 chr2 30891943 30892150 + 1.33333 NA Intergenic HAL1|LINE|L1 -84600 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 256.667-22 chr5 90921603 90921906 + 1.33333 NA intron (NR_003149, intron 83 of 89) intron (NR_003149, intron 83 of 89) 362957 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 156.667-15 chr10 31148330 31148513 + 1.33333 NA Intergenic L1MA4A|LINE|L1 -39462 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 130.666 chr8 42177267 42177393 + 1.33333 NA intron (NM_001319189, intron 11 of 11) MER6|DNA|TcMar-Tigger 24267 NM_006803 10947 Hs.654529 NM_006803 ENSG00000070718 AP3M2 AP47B|CLA20|P47B adaptor related protein complex 3 subunit mu 2 protein-coding 158.5-2 chr1 42706317 42706645 + 1.33333 NA Intergenic L1MA4A|LINE|L1 23345 NR_132737 4904 Hs.473583 NM_004559 ENSG00000065978 YBX1 BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 Y-box binding protein 1 protein-coding 218-18 chr17 41794835 41795008 + 1.33333 NA Intergenic AluSp|SINE|Alu -8153 NM_001352774 3728 Hs.514174 NM_002230 ENSG00000173801 JUP CTNNG|DP3|DPIII|PDGB|PKGB junction plakoglobin protein-coding 239.333-17 chr4 34361916 34362183 + 1.33333 NA Intergenic MER50-int|LTR|ERV1 -92302 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 144.666-2 chr5 19541951 19542072 + 1.33333 NA intron (NM_001349559, intron 9 of 12) intron (NM_001349559, intron 9 of 12) 344261 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 178.333-8 chr11 99038829 99039037 + 1.33333 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 17984 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 129.333-66 chr4 64636546 64636752 + 1.33333 NA Intergenic Intergenic -227189 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 140.666 chr10 35685730 35685887 + 1.33333 NA Intergenic Intergenic -44374 NM_031866 8325 Hs.302634 NM_031866 ENSG00000177283 FZD8 FZ-8|hFZ8 frizzled class receptor 8 protein-coding 321.166-3 chr2 43592858 43593340 + 1.33333 NA intron (NM_001345925, intron 1 of 38) L3|LINE|CR1 2875 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 238.833 chr10 82357854 82358422 + 1.33333 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -125218 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 225.666-4 chr8 54695973 54696243 + 1.33333 NA Intergenic Intergenic 80012 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 194.5-10 chr16 78757676 78757950 + 1.33333 NA intron (NM_001291997, intron 7 of 7) MLT1A0|LTR|ERVL-MaLR 658159 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 177-53 chr5 11612046 11612267 + 1.33333 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -23090 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 291.5-2 chr10 96008983 96009305 + 1.33333 NA intron (NM_001349008, intron 25 of 34) L1ME1|LINE|L1 9053 NM_001001732 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 187-30 chr4 31168789 31168985 + 1.33333 NA Intergenic Intergenic -2257 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 193.833-4 chr1 158965745 158965939 + 1.33333 NA intron (NM_198929, intron 7 of 7) L1PA15|LINE|L1 -34134 NM_001364867 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 239.833-9 chr12 45076567 45077048 + 1.33333 NA Intergenic Intergenic -11396 NR_026583 83956 Hs.650500 NM_032032 RACGAP1P FKSG42 Rac GTPase activating protein 1 pseudogene pseudo 276.666-4 chr12 133177382 133177629 + 1.33333 NA Intergenic L1PB4|LINE|L1 -3990 NM_001165882 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 172.333-55 chr4 41991584 41991751 + 1.33333 NA intron (NM_006345, intron 1 of 17) FLAM_A|SINE|Alu 1137 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 201.333-19 chr19 29861088 29861432 + 1.33333 NA Intergenic MADE1|DNA|TcMar-Mariner 49269 NM_001238 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 308.333-9 chr8 101221846 101222146 + 1.33333 NA Intergenic MamSINE1|SINE|tRNA-RTE -15932 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 205.333-47 chr5 24802679 24802919 + 1.33333 NA Intergenic L1ME2z|LINE|L1 37784 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 150.333-41 chr15 51248046 51248256 + 1.33333 NA intron (NM_000103, intron 1 of 9) intron (NM_000103, intron 1 of 9) -4236 NM_001347254 1588 Hs.260074 NM_000103 ENSG00000137869 CYP19A1 ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM cytochrome P450 family 19 subfamily A member 1 protein-coding 287.666-2 chr8 124766344 124766565 + 1.33333 NA Intergenic Intergenic -37947 NM_014751 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 186-60 chr9 31931034 31931281 + 1.33333 NA Intergenic Intergenic -453446 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 173-62 chrX 131533352 131533592 + 1.33333 NA Intergenic L1M4|LINE|L1 -10602 NM_001004486 347468 Hs.553711 NM_001004486 ENSG00000171054 OR13H1 ORX1 olfactory receptor family 13 subfamily H member 1 protein-coding 165.667-53 chr4 131459049 131459351 + 1.33333 NA Intergenic Intergenic -305638 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 204-8 chr14 67937731 67938053 + 1.33333 NA intron (NM_133509, intron 7 of 10) MamGypsy2-I|LTR|Gypsy 114300 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 247.333-6 chr16 68562137 68562517 + 1.33333 NA intron (NM_001305204, intron 4 of 4) intron (NM_001305204, intron 4 of 4) 23036 NM_001305207 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 249-9 chr2 22636608 22636880 + 1.33333 NA Intergenic L2c|LINE|L2 100265 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 280.5-6 chr10 109723067 109723545 + 1.33333 NA Intergenic Intergenic 199940 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 301.333 chr10 51588170 51588553 + 1.33333 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 111234 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 306-5 chr12 118302601 118303128 + 1.33333 NA intron (NM_001346490, intron 1 of 21) intron (NM_001346490, intron 1 of 21) 56841 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 264.5-9 chr3 76733235 76733528 + 1.33333 NA Intergenic Intergenic -306718 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 254-20 chr4 59398682 59398984 + 1.33333 NA Intergenic Intergenic 385260 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 228.166 chr11 98516278 98516521 + 1.33333 NA Intergenic Intergenic -504550 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 213.333-26 chr3 30100424 30100597 + 1.33333 NA Intergenic Intergenic -166354 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 244-25 chr8 124550562 124550833 + 1.33333 NA TTS (NM_001363302) TTS (NM_001363302) 11574 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 254-15 chr3 89643037 89643366 + 1.33333 NA Intergenic L1MA3|LINE|L1 535580 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 365.5-6 chr7 50076314 50076865 + 1.33333 NA intron (NM_007009, intron 3 of 7) L1MA1|LINE|L1 16657 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 254.333-6 chr14 48039696 48039919 + 1.33333 NA Intergenic L1M2|LINE|L1 -244793 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 338-10 chr4 164295993 164296435 + 1.33333 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) 87041 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 291.166-3 chr3 143908863 143909348 + 1.33333 NA Intergenic L1MC1|LINE|L1 -60637 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 355-7 chr2 127186333 127186753 + 1.33333 NA 3' UTR (NM_001367502, exon 9 of 9) 3' UTR (NM_001367502, exon 9 of 9) 19224 NM_001001665 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 158.5-15 chr11 101781424 101781620 + 1.33333 NA Intergenic L1PB|LINE|L1 -133488 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 217-35 chr8 111286835 111287029 + 1.33333 NA Intergenic MLT1A1|LTR|ERVL-MaLR -50729 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 353.666 chr7 91977435 91977828 + 1.33333 NA intron (NM_147185, intron 2 of 49) L1M4|LINE|L1 36756 NM_005751 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 209.333-46 chr8 73082806 73083034 + 1.33333 NA intron (NM_153225, intron 1 of 4) intron (NM_153225, intron 1 of 4) 10252 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 381 chr2 31696821 31697253 + 1.33333 NA Intergenic Intergenic 106943 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 324.166 chr6 132208162 132208572 + 1.33333 NA Intergenic L1PA16|LINE|L1 74389 NR_038981 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 338.667 chr12 44647278 44647685 + 1.33333 NA intron (NM_006159, intron 14 of 20) intron (NM_006159, intron 14 of 20) 228180 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 286.5-19 chr8 127323353 127323908 + 1.33333 NA intron (NR_117099, intron 2 of 3) MSTB-int|LTR|ERVL-MaLR -76769 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 160-52 chr3 99730548 99730695 + 1.33333 NA intron (NM_001850, intron 2 of 4) intron (NM_001850, intron 2 of 4) -87241 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 213.166-2 chrX 73613623 73613912 + 1.33333 NA intron (NM_001300884, intron 3 of 4) L1MB4|LINE|L1 50619 NM_001039840 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 181.833-2 chr1 106000470 106000713 + 1.33333 NA intron (NR_146609, intron 3 of 5) intron (NR_146609, intron 3 of 5) 27662 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 258.333-20 chr2 144628530 144628786 + 1.33333 NA Intergenic LTR40b|LTR|ERVL -39309 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 288-10 chr3 112142414 112142675 + 1.33333 NA intron (NM_001320531, intron 27 of 27).2 intron (NM_001320531, intron 27 of 27).2 9121 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 159.833-30 chr2 197600201 197600351 + 1.33333 NA intron (NM_144629, intron 7 of 8) intron (NM_144629, intron 7 of 8) 75311 NM_144629 130132 Hs.591615 NM_144629 ENSG00000162944 RFTN2 C2orf11|Raftlin-2 raftlin family member 2 protein-coding 274 chr1 112106420 112106827 + 1.33333 NA Intergenic MER21B|LTR|ERVL 116087 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 272.667-17 chr6 137435968 137436380 + 1.33333 NA Intergenic Intergenic 58220 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 321.333-7 chrX 108102172 108102643 + 1.33333 NA intron (NM_001321287, intron 1 of 13) L1MB1|LINE|L1 10629 NM_052936 115201 Hs.8763 NM_052936 ENSG00000101844 ATG4A APG4A|AUTL2 autophagy related 4A cysteine peptidase protein-coding 256-16 chr6 148133048 148133362 + 1.33333 NA Intergenic Intergenic -139123 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 161.5-45 chr7 8379540 8379668 + 1.33333 NA Intergenic Intergenic -54005 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 206-24 chr3 122815256 122815520 + 1.33333 NA intron (NM_032839, intron 2 of 8) AluSx1|SINE|Alu 20319 NM_032839 84925 Hs.477346 NM_032839 ENSG00000138463 SLC49A4 DIRC2|RCC4 solute carrier family 49 member 4 protein-coding 206.667-52 chr9 78276871 78277147 + 1.33333 NA 3' UTR (NM_001330691, exon 17 of 17) 3' UTR (NM_001330691, exon 17 of 17) -20116 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 149.333-11 chr10 57159018 57159168 + 1.33333 NA Intergenic MER58C|DNA|hAT-Charlie 145466 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 257.5-18 chr9 37005885 37006192 + 1.33333 NA intron (NM_001280548, intron 4 of 8) intron (NM_001280548, intron 4 of 8) 28230 NM_001280554 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 268.666-3 chr20 54009032 54009393 + 1.33333 NA intron (NM_001366297, intron 4 of 8) L1MD1|LINE|L1 49808 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 424.501 chr2 201847972 201848402 + 1.33333 NA intron (NM_001366386, intron 9 of 13) intron (NM_001366386, intron 9 of 13) 41608 NM_001261435 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 217-27 chr4 142817992 142818185 + 1.33333 NA intron (NM_001331040, intron 1 of 25) intron (NM_001331040, intron 1 of 25) 28447 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 200-28 chr17 63094444 63094676 + 1.33333 NA intron (NM_025185, intron 3 of 25) intron (NM_025185, intron 3 of 25) 128325 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 310.166-2 chr10 92824435 92824731 + 1.33333 NA Intergenic Intergenic -2248 NM_001013848 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 268.5-4 chr19 30682983 30683339 + 1.33333 NA intron (NM_001352260, intron 5 of 5) intron (NM_001352260, intron 5 of 5) 310777 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 327.499-2 chr5 116201505 116201799 + 1.33333 NA intron (NM_001308080, intron 5 of 6) L1MC1|LINE|L1 -54091 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 122.333-62 chr20 56845089 56845250 + 1.33333 NA Intergenic MER81|DNA|hAT-Blackjack 215863 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 306.166 chr3 89033760 89034107 + 1.33333 NA Intergenic Intergenic -73688 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 192-13 chr12 32218696 32218899 + 1.33333 NA intron (NR_148725, intron 2 of 9) intron (NR_148725, intron 2 of 9) 111950 NR_148725 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 246.167-7 chr14 27492083 27492429 + 1.33333 NA intron (NR_148991, intron 2 of 2) L1M2|LINE|L1 -120332 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 267.666-2 chr4 36699589 36700116 + 1.33333 NA Intergenic Tigger3a|DNA|TcMar-Tigger -57952 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 186.333-49 chr6 3979733 3979948 + 1.33333 NA Intergenic L1MD2|LINE|L1 -41460 NR_146785 8899 Hs.159014 NM_003913 ENSG00000112739 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 316.666 chr1 211602526 211603028 + 1.33333 NA Intergenic Intergenic -23616 NM_021194 7779 Hs.519469 NM_021194 ENSG00000170385 SLC30A1 ZNT1|ZRC1 solute carrier family 30 member 1 protein-coding 186.666-2 chr2 221359087 221359245 + 1.33333 NA Intergenic Intergenic 213138 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 327.666 chr8 80660513 80660896 + 1.33333 NA intron (NM_001033723, intron 6 of 8) L1MA4A|LINE|L1 174478 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 257 chr1 99977894 99978309 + 1.33333 NA intron (NM_001271685, intron 1 of 7) intron (NM_001271685, intron 1 of 7) 7584 NM_001271685 23443 Hs.448979 NM_012243 ENSG00000117620 SLC35A3 AMRS solute carrier family 35 member A3 protein-coding 302.666-2 chr14 53914535 53914903 + 1.33333 NA Intergenic Intergenic 33765 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 347.166-2 chr19 11685423 11685772 + 1.33333 NA non-coding (NR_028594, exon 3 of 3) non-coding (NR_028594, exon 3 of 3) 11599 NR_028594 401898 Hs.672384 NM_001013691 ZNF833P ZNF833 zinc finger protein 833, pseudogene pseudo 322.167-8 chr5 12363734 12364063 + 1.33333 NA Intergenic Intergenic -210959 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 155.166-2 chr9 116328981 116329138 + 1.33333 NA intron (NM_002581, intron 10 of 21) intron (NM_002581, intron 10 of 21) 71547 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 255.333-27 chr8 109111854 109112346 + 1.33333 NA intron (NM_003301, intron 2 of 2) MIRc|SINE|MIR 25472 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 282.833-4 chr8 122520355 122521035 + 1.33333 NA intron (NR_131202, intron 2 of 3) AluSc8|SINE|Alu 47949 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 225.667-14 chr18 38854117 38854675 + 1.33333 NA Intergenic Intergenic 767779 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 173.166 chr14 43237593 43237753 + 1.33333 NA Intergenic Intergenic 1269610 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 148-69 chr5 108371483 108371693 + 1.33333 NA intron (NM_001163315, intron 1 of 8) L1M4|LINE|L1 10510 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 222.333-39 chrX 49785214 49785515 + 1.33333 NA Intergenic MER77B|LTR|ERVL -43896 NM_001318877 9506 Hs.441038 NM_007003 ENSG00000101951 PAGE4 CT16.7|GAGE-9|GAGEC1|JM-27|JM27|PAGE-1|PAGE-4 PAGE family member 4 protein-coding 220.666 chr1 32947300 32947550 + 1.33333 NA intron (NM_153341, intron 3 of 8) AluSx1|SINE|Alu 17384 NM_001127361 127544 Hs.591504 NM_153341 ENSG00000116514 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 325.834-3 chr6 67834746 67835158 + 1.33333 NA Intergenic Intergenic -220399 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 195-41 chr6 166479813 166479995 + 1.33333 NA intron (NM_001006932, intron 11 of 21) L1ME4b|LINE|L1 -14521 NR_046793 100874353 Hs.675698 NR_046793 ENSG00000232082 RPS6KA2-IT1 - RPS6KA2 intronic transcript 1 ncRNA 231.167-27 chr6 50549820 50550197 + 1.33333 NA Intergenic MER20B|DNA|hAT-Charlie -163536 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 236.5-25 chr5 1520703 1521332 + 1.33333 NA intron (NM_024830, intron 1 of 13) intron (NM_024830, intron 1 of 13) 2943 NM_024830 79888 Hs.368853 NM_024830 ENSG00000153395 LPCAT1 AGPAT10|AGPAT9|AYTL2|LPCAT-1|PFAAP3|lpcat|lysoPAFAT lysophosphatidylcholine acyltransferase 1 protein-coding 417.333-2 chr2 109327065 109328043 + 1.33333 NA intron (NM_001099289, intron 1 of 9) L1M5|LINE|L1 -13929 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 169-50 chr6 75075728 75075940 + 1.33333 NA Intergenic MIRb|SINE|MIR 52948 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 334.999 chr12 92981889 92982160 + 1.33333 NA Intergenic L1PA15|LINE|L1 -52729 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 210.666-2 chr14 63007066 63007326 + 1.33333 NA intron (NM_139318, intron 2 of 10) Tigger6a|DNA|TcMar-Tigger 38262 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 198.333-40 chr7 11681286 11681674 + 1.33333 NA intron (NM_015204, intron 1 of 26) L1PA17|LINE|L1 150718 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 233.166 chr14 56299240 56299514 + 1.33333 NA 3' UTR (NM_021255, exon 6 of 6) 3' UTR (NM_021255, exon 6 of 6) 180966 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 198.833-21 chr4 63759685 63759889 + 1.33333 NA Intergenic Intergenic 649663 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 210.667-26 chr2 187928452 187928834 + 1.33333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 359048 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 258.5-8 chr18 748527 748754 + 1.33333 NA intron (NM_005433, intron 3 of 11) L1MB8|LINE|L1 -35976 NR_148707 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 FUCD|RTS|TYMSAS enolase superfamily member 1 protein-coding 158.833-4 chr10 18921915 18922061 + 1.33333 NA Intergenic L1MB2|LINE|L1 -126813 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 280.666 chr1 114525874 114526241 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -14854 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 118.666 chr11 108858668 108858763 + 1.33333 NA intron (NM_004398, intron 16 of 17) intron (NM_004398, intron 16 of 17) 193646 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 220-7 chr12 283723 284038 + 1.33333 NA 3' UTR (NM_001042603, exon 28 of 28) 3' UTR (NM_001042603, exon 28 of 28) -21007 NM_001190997 6540 Hs.504398 NM_016615 ENSG00000010379 SLC6A13 GAT-2|GAT2|GAT3 solute carrier family 6 member 13 protein-coding 119.666 chr5 133219016 133219173 + 1.33333 NA intron (NM_015082, intron 12 of 15) L2c|LINE|L2 167081 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 197-41 chr6 65226792 65226944 + 1.33333 NA intron (NM_001292009, intron 12 of 43) L1MB5|LINE|L1 -74550 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 262-12 chr2 230556786 230557144 + 1.33333 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 140209 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 298.667-8 chr22 19593407 19593852 + 1.33333 NA Intergenic MER66B|LTR|ERV1 -26790 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 245.667-18 chr2 82019669 82020030 + 1.33333 NA Intergenic L1MA4|LINE|L1 -552903 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 136.5-60 chr21 20458848 20458985 + 1.33333 NA Intergenic Intergenic -200231 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 293.666-3 chr14 59320533 59321097 + 1.33333 NA intron (NM_001270520, intron 5 of 24) L1MB7|LINE|L1 57374 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 255.5-17 chr4 102212236 102212616 + 1.33333 NA Intergenic Intergenic 111886 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 200.334-7 chr4 30960593 30961056 + 1.33333 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -210320 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 303.499 chr1 168518224 168518509 + 1.33333 NA Intergenic Intergenic -22722 NR_125956 101928565 Hs.563806 NR_125956 ENSG00000228697 LOC101928565 - uncharacterized LOC101928565 ncRNA 299-13 chr6 38347886 38348541 + 1.33333 NA intron (NM_052893, intron 7 of 11) intron (NM_052893, intron 7 of 11) -133383 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 142.333-33 chr15 24295350 24295471 + 1.33333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -125462 NR_152824 791115 Hs.560378 NR_026647 ENSG00000260551 PWRN2 NCRNA00199 Prader-Willi region non-protein coding RNA 2 ncRNA 240-15 chr17 68783707 68783933 + 1.33333 NA Intergenic Intergenic 155666 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 164-79 chr8 126811947 126812117 + 1.33333 NA Intergenic Intergenic -201122 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 225-20 chr2 85783970 85784354 + 1.33333 NA promoter-TSS (NR_106719) promoter-TSS (NR_106719) -485 NR_106719 102466516 NR_106719 ENSG00000278783 MIR6071 hsa-mir-6071 microRNA 6071 ncRNA 230.333-33 chr8 77815531 77815817 + 1.33333 NA Intergenic L1PB4|LINE|L1 364977 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 126.667-113 chr9 74239161 74239381 + 1.33333 NA Intergenic L1MB4|LINE|L1 -132260 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 132.666 chr1 63878814 63878946 + 1.33333 NA intron (NM_005012, intron 1 of 8) L2a|LINE|L2 104863 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 155.333-14 chr10 72889013 72889139 + 1.33333 NA Intergenic MER30|DNA|hAT-Charlie -4663 NM_152635 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 294.333-3 chr10 76344230 76344500 + 1.33333 NA intron (NM_001305581, intron 6 of 6) L1MC4|LINE|L1 -543679 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 294.166-4 chr8 134344894 134345313 + 1.33333 NA Intergenic L2a|LINE|L2 -252968 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 208.166 chr1 113677242 113677708 + 1.33333 NA intron (NM_001142782, intron 19 of 20) MIRb|SINE|MIR 81680 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 228.333-9 chr14 46836672 46837002 + 1.33333 NA Intergenic Intergenic -185056 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 450-2 chr7 4236078 4236749 + 1.33333 NA intron (NM_001079653, intron 15 of 19) intron (NM_001079653, intron 15 of 19) -101576 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 141.166 chr1 199632352 199632492 + 1.33333 NA Intergenic Intergenic -395288 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 261.5-18 chr7 41782425 41782670 + 1.33333 NA Intergenic Intergenic -79457 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 218.5-33 chr9 29349492 29349677 + 1.33333 NA Intergenic HAL1b|LINE|L1 -135983 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 344.666-2 chr1 159479001 159479356 + 1.33333 NA Intergenic Intergenic 39456 NM_012351 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 380-5 chr7 8415168 8415938 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger -18056 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 220.333-15 chr2 106986141 106986598 + 1.33333 NA Intergenic Intergenic -99260 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 232.499 chr5 10056807 10057011 + 1.33333 NA Intergenic L2a|LINE|L2 -153085 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 517.167 chr1 146016826 146017420 + 1.33333 NA TTS (NM_001316767) TTS (NM_001316767) 4612 NM_001316767 148738 Hs.632436 NM_145277 ENSG00000168509 HJV HFE2|HFE2A|JH|RGMC hemojuvelin BMP co-receptor protein-coding 195.666 chr11 38719002 38719189 + 1.33333 NA Intergenic L2b|LINE|L2 70237 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 176.667-6 chr1 84530544 84530761 + 1.33333 NA intron (NM_001310156, intron 6 of 13) intron (NM_001310156, intron 6 of 13) -24071 NM_005274 2787 Hs.645427 NM_005274 ENSG00000174021 GNG5 - G protein subunit gamma 5 protein-coding 264-21 chr7 132189741 132190028 + 1.33333 NA intron (NM_020911, intron 14 of 31) intron (NM_020911, intron 14 of 31) -70977 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 230-28 chr8 71828900 71829208 + 1.33333 NA Intergenic L1MB5|LINE|L1 -14069 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 225.666-2 chr5 5160700 5161019 + 1.33333 NA intron (NM_139056, intron 3 of 22) intron (NM_139056, intron 3 of 22) 20529 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 250-13 chr2 106536834 106537143 + 1.33333 NA intron (NM_001368307, intron 5 of 5) LTR102_Mam|LTR|ERVL 49624 NM_001368307 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 268.5-5 chr2 28334339 28334630 + 1.33333 NA intron (NM_001329114, intron 13 of 13) intron (NM_001329114, intron 13 of 13) -24025 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 251-21 chr6 6558969 6559190 + 1.33333 NA intron (NR_026970, intron 3 of 7) L1MD2|LINE|L1 -29641 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 263.333-11 chr15 23795809 23796226 + 1.33333 NA Intergenic L1MD3|LINE|L1 -108712 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 333.167-4 chr8 83935851 83936659 + 1.33333 NA Intergenic Intergenic -246532 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 170.666 chr11 35475880 35476042 + 1.33333 NA intron (NM_015430, intron 3 of 11) intron (NM_015430, intron 3 of 11) 49655 NM_001001991 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 270.501 chr10 34919220 34919639 + 1.33333 NA Intergenic Intergenic 103661 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 368.833 chr21 31822043 31822506 + 1.33333 NA Intergenic L1MA4|LINE|L1 -50746 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 346.666 chr12 5263819 5264261 + 1.33333 NA Intergenic MLT1H1|LTR|ERVL-MaLR -20889 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 180.667-67 chr7 50544705 50544956 + 1.33333 NA intron (NM_001082971, intron 1 of 14) Tigger17a|DNA|TcMar-Tigger 13071 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 252.667-14 chr2 194883766 194884085 + 1.33333 NA Intergenic Intergenic 153330 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 142.667-23 chr12 59070851 59071015 + 1.33333 NA Intergenic Intergenic -150395 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 177.5-27 chr14 70285961 70286143 + 1.33333 NA Intergenic Intergenic -38251 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 242-25 chr8 68370584 68370906 + 1.33333 NA intron (NR_146187, intron 1 of 13) intron (NR_146187, intron 1 of 13) -39254 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 314.834-4 chr6 80441317 80441667 + 1.33333 NA Intergenic Intergenic 334821 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 356.167 chr4 55586217 55586612 + 1.33333 NA intron (NM_152401, intron 1 of 5) L1MB4|LINE|L1 5831 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 330.833 chr4 111863142 111863462 + 1.33333 NA Intergenic L1ME5|LINE|L1 -282152 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 312.666-3 chr5 106386182 106386545 + 1.33333 NA Intergenic Intergenic 624651 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 195-16 chr2 58247019 58247268 + 1.33333 NA Intergenic Intergenic -5763 NM_018062 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 119-72 chr4 44290481 44290650 + 1.33333 NA intron (NM_198353, intron 1 of 1) L1PA16|LINE|L1 158244 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 160.166 chr10 63195440 63195605 + 1.33333 NA intron (NM_001322258, intron 12 of 24) intron (NM_001322258, intron 12 of 24) 62194 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 134-84 chr4 120798801 120799018 + 1.33333 NA intron (NM_001300824, intron 8 of 13) (CATATAA)n|Simple_repeat|Simple_repeat 123957 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 281.333-16 chrX 93361698 93362018 + 1.33333 NA Intergenic Intergenic 311720 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 212.666-4 chr4 152514841 152515192 + 1.33333 NA intron (NM_001349798, intron 2 of 13) intron (NM_001349798, intron 2 of 13) 20017 NM_033632 55294 Hs.561245 NM_018315 ENSG00000109670 FBXW7 AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 F-box and WD repeat domain containing 7 protein-coding 302.999 chr18 1827675 1827971 + 1.33333 NA Intergenic Intergenic -468194 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 244.666-2 chr11 84265581 84265930 + 1.33333 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) 7525 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 232-12 chr14 65787817 65788335 + 1.33333 NA Intergenic AluSx1|SINE|Alu 316974 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 217.833-11 chr17 60051060 60051270 + 1.33333 NA intron (NM_022070, intron 14 of 19) intron (NM_022070, intron 14 of 19) -8060 NR_039890 100616210 NR_039890 ENSG00000264049 MIR4737 - microRNA 4737 ncRNA 389.834 chr16 48418366 48418995 + 1.33333 NA Intergenic AluSq|SINE|Alu -33267 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 246.666-9 chr7 89980353 89980666 + 1.33333 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -138891 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 411.333 chr14 29422320 29422651 + 1.33333 NA Intergenic Intergenic 504611 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 140.333-28 chr18 12999212 12999396 + 1.33333 NA intron (NM_032142, intron 1 of 44) intron (NM_032142, intron 1 of 44) 7942 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 199-10 chr15 86874842 86875159 + 1.33333 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -57880 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 190.333-30 chr2 15507477 15507731 + 1.33333 NA intron (NR_052013, intron 10 of 50) MIRb|SINE|MIR 53730 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 188.167-3 chr1 238994199 238994701 + 1.33333 NA Intergenic Intergenic -392118 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 202-10 chr13 102239420 102239644 + 1.33333 NA intron (NM_001321940, intron 1 of 5) intron (NM_001321940, intron 1 of 5) 71154 NM_001321931 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 153.333-33 chr19 28852834 28853067 + 1.33333 NA Intergenic Intergenic -112181 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 138.833-6 chr1 171076211 171076410 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR -14595 NM_001319173 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 296-5 chr13 113523268 113523582 + 1.33333 NA intron (NR_146222, intron 8 of 11) L1MDa|LINE|L1 32404 NR_146221 55002 Hs.317593 NM_017905 ENSG00000150403 TMCO3 C13orf11 transmembrane and coiled-coil domains 3 protein-coding 243.333-24 chrX 155058237 155058590 + 1.33333 NA 3' UTR (NM_023934, exon 5 of 5) 3' UTR (NM_023934, exon 5 of 5) 12723 NM_001018024 100272147 Hs.6917 NM_001018024 ENSG00000182712 CMC4 C6.1B|MTCP1|MTCP1B|MTCP1NB|p8|p8MTCP1 C-X9-C motif containing 4 protein-coding 189-33 chr3 170921259 170921474 + 1.33333 NA Intergenic L1PREC2|LINE|L1 -12729 NM_020390 56648 Hs.164144 NM_020390 ENSG00000163577 EIF5A2 EIF-5A2|eIF5AII eukaryotic translation initiation factor 5A2 protein-coding 362.166-2 chr6 140787146 140787647 + 1.33333 NA Intergenic L1ME3|LINE|L1 103582 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 159-23 chr14 84912213 84912354 + 1.33333 NA Intergenic MER57A-int|LTR|ERV1 -359649 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 297.5-4 chr12 97965251 97965558 + 1.33333 NA Intergenic AluSg4|SINE|Alu -26283 NR_039716 100616287 NR_039716 ENSG00000265861 MIR4495 - microRNA 4495 ncRNA 142-40 chr2 16460162 16460338 + 1.33333 NA Intergenic MER44A|DNA|TcMar-Tigger 205584 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 154.666-3 chr8 34768256 34768458 + 1.33333 NA Intergenic Intergenic -15564 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 218.666-2 chr2 156268144 156268379 + 1.33333 NA Intergenic Intergenic -13330 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 396.667 chr9 90444915 90445353 + 1.33333 NA Intergenic Intergenic -11645 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 263.833-10 chr4 102139185 102139485 + 1.33333 NA Intergenic Intergenic 184977 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 225.667-23 chr3 117832896 117833210 + 1.33333 NA Intergenic Intergenic -142128 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 203.333-13 chr16 77337588 77337830 + 1.33333 NA intron (NM_199355, intron 11 of 22) intron (NM_199355, intron 11 of 22) 97325 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 222.333-7 chr12 91228795 91228999 + 1.33333 NA Intergenic Intergenic -46080 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 187-46 chr8 118120990 118121163 + 1.33333 NA Intergenic Intergenic -9257 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 211.333-2 chr1 55718816 55719016 + 1.33333 NA Intergenic Intergenic 226047 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 184.333-2 chr1 62479058 62479288 + 1.33333 NA intron (NM_001271999, intron 42 of 48) intron (NM_001271999, intron 42 of 48) 42124 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 222.166-4 chr2 34518300 34518580 + 1.33333 NA Intergenic L1ME3|LINE|L1 -159117 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 289.666-5 chr5 54116057 54116395 + 1.33333 NA intron (NM_019087, intron 3 of 4) LTR16A1|LTR|ERVL -164627 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 291.167-5 chr5 97204463 97204856 + 1.33333 NA Intergenic Intergenic -21412 NM_001159749 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 222-11 chr12 72887148 72887371 + 1.33333 NA Intergenic Intergenic -271931 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 151.5-62 chr6 69949003 69949260 + 1.33333 NA intron (NM_001858, intron 9 of 50) intron (NM_001858, intron 9 of 50) 82575 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 147.333-73 chr6 41304007 41304177 + 1.33333 NA Intergenic MER63A|DNA|hAT-Blackjack -17347 NR_136332 54210 Hs.283022 NM_018643 ENSG00000124731 TREM1 CD354|TREM-1 triggering receptor expressed on myeloid cells 1 protein-coding 278.666-7 chr9 18836599 18837089 + 1.33333 NA intron (NM_001040272, intron 23 of 28) L1PA16|LINE|L1 196365 NM_153707 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 164.166 chr10 48329690 48329826 + 1.33333 NA intron (NM_001323302, intron 3 of 13) intron (NM_001323302, intron 3 of 13) 23081 NM_001323323 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 221 chr1 118424550 118424870 + 1.33333 NA Intergenic L2c|LINE|L2 -239482 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 307.5-14 chrX 43384841 43385270 + 1.33333 NA Intergenic L2b|LINE|L2 208061 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 128.833-12 chr1 222194131 222194261 + 1.33333 NA Intergenic Intergenic -215676 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 346.5-3 chr18 1683950 1684673 + 1.33333 NA Intergenic Intergenic -324682 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 148.166 chr12 10350282 10350489 + 1.33333 NA Intergenic L1PA8A|LINE|L1 -12093 NR_159946 113523642 Hs.539490 NR_159946 LINC02617 - long intergenic non-protein coding RNA 2617 ncRNA 186-41 chr4 152796781 152796956 + 1.33333 NA intron (NM_001287433, intron 2 of 8) intron (NM_001287433, intron 2 of 8) 16914 NM_001025595 27236 Hs.416089 NM_014447 ENSG00000164144 ARFIP1 HSU52521 ADP ribosylation factor interacting protein 1 protein-coding 268.5-6 chr2 57187994 57188224 + 1.33333 NA Intergenic Intergenic -719542 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 181.5-28 chr2 81958191 81958515 + 1.33333 NA Intergenic Intergenic -491407 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 403.833-2 chr10 61206704 61207083 + 1.33333 NA Intergenic THE1D|LTR|ERVL-MaLR 190618 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 220-29 chrX 29337265 29337471 + 1.33333 NA intron (NM_014271, intron 3 of 10) intron (NM_014271, intron 3 of 10) -236910 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 196.667-21 chr18 5558030 5558413 + 1.33333 NA intron (NM_001281535, intron 3 of 21) intron (NM_001281535, intron 3 of 21) -13882 NM_001330557 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 238.5-27 chr5 111861063 111861598 + 1.33333 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -51178 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 266.333-17 chr6 165868777 165869110 + 1.33333 NA Intergenic L1MA4|LINE|L1 -118608 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 138-78 chr4 88604483 88604687 + 1.33333 NA intron (NM_001271602, intron 2 of 24) L1MB8|LINE|L1 12105 NM_014606 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 241.667-37 chr8 19144764 19145148 + 1.33333 NA Intergenic Intergenic 100566 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 122.833-64 chr4 73530807 73530957 + 1.33333 NA Intergenic Intergenic 22079 NR_046377 728040 Hs.640574 NR_046377 ENSG00000250436 LINC02499 - long intergenic non-protein coding RNA 2499 ncRNA 218-35 chr5 1677088 1677335 + 1.33333 NA Intergenic L1MA4A|LINE|L1 31657 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 153-9 chr10 55931924 55932302 + 1.33333 NA Intergenic L1M4|LINE|L1 -304171 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 264.666-2 chr17 69353280 69353554 + 1.33333 NA Intergenic LTR37A|LTR|ERV1 -26284 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 291.5 chr1 196956297 196956706 + 1.33333 NA intron (NM_005666, intron 3 of 4) L1MDa|LINE|L1 12733 NM_001312672 3080 Hs.632450 NM_005666 ENSG00000080910 CFHR2 CFHL2|FHR2|HFL3 complement factor H related 2 protein-coding 216.5-19 chr2 216084858 216085167 + 1.33333 NA intron (NM_001142310, intron 2 of 3) AluSx3|SINE|Alu 3093 NM_001142311 92691 Hs.334916 NM_138390 ENSG00000163449 TMEM169 - transmembrane protein 169 protein-coding 300.666-5 chr5 36432743 36433022 + 1.33333 NA Intergenic L1MD|LINE|L1 -130980 NM_001323276 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 329.667-6 chr4 67358426 67359181 + 1.33333 NA Intergenic MER21C|LTR|ERVL 63197 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 265.999 chr9 105940303 105940574 + 1.33333 NA Intergenic Intergenic 245897 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 165.333-3 chr1 190110814 190111017 + 1.33333 NA intron (NM_199051, intron 7 of 7) intron (NM_199051, intron 7 of 7) 365095 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 334.333-5 chr5 125098275 125098623 + 1.33333 NA intron (NR_109882, intron 2 of 5) intron (NR_109882, intron 2 of 5) 61618 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 128-25 chr13 57535813 57535931 + 1.33333 NA Intergenic Intergenic -95872 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 167.667-52 chr21 23688506 23688671 + 1.33333 NA Intergenic Intergenic -303753 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 240-31 chr6 102964618 102964831 + 1.33333 NA Intergenic Intergenic 1565739 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 206.667-3 chr1 97450353 97450658 + 1.33333 NA intron (NM_000110, intron 13 of 22) intron (NM_000110, intron 13 of 22) -346416 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 235.666-2 chr12 51965385 51965794 + 1.33333 NA intron (NM_020327, intron 1 of 8) intron (NM_020327, intron 1 of 8) 12209 NM_020327 91 Hs.438918 NM_004302 ENSG00000135503 ACVR1B ACTRIB|ACVRLK4|ALK4|SKR2 activin A receptor type 1B protein-coding 261.333-11 chr3 102038530 102038851 + 1.33333 NA Intergenic Intergenic 97831 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 308.166-2 chr5 94066019 94066345 + 1.33333 NA intron (NM_001163418, intron 1 of 8) L1MA3|LINE|L1 45481 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 318.166 chr4 65756836 65757241 + 1.33333 NA Intergenic Intergenic -86543 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 247.666 chr1 180106748 180107095 + 1.33333 NA intron (NM_014810, intron 37 of 37) L3|LINE|CR1 -47912 NM_001004128 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 168.667-9 chr12 42758603 42758862 + 1.33333 NA Intergenic Intergenic 66516 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 230.667-2 chr1 176706956 176707227 + 1.33333 NA intron (NM_020318, intron 10 of 22) intron (NM_020318, intron 10 of 22) 243916 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 361.666 chr7 31527265 31527680 + 1.33333 NA intron (NR_047565, intron 1 of 13) intron (NR_047565, intron 1 of 13) -1990 NM_001257968 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 134.667-14 chr10 84429310 84429499 + 1.33333 NA intron (NM_018999, intron 5 of 10) L1M4|LINE|L1 4235 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 181.666-7 chr8 119054604 119054818 + 1.33333 NA intron (NM_001324095, intron 3 of 7) intron (NM_001324095, intron 3 of 7) -12536 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 198.333-12 chr15 27466367 27466633 + 1.33333 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -305181 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 225.333-27 chr7 5063921 5064100 + 1.33333 NA exon (NM_021163, exon 5 of 5) exon (NM_021163, exon 5 of 5) -8050 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 124-64 chr3 47994166 47994262 + 1.33333 NA intron (NM_002375, intron 2 of 18) intron (NM_002375, intron 2 of 18) 94634 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 192-56 chr9 98682181 98682365 + 1.33333 NA intron (NM_005458, intron 1 of 18) intron (NM_005458, intron 1 of 18) 26662 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 255.333-19 chr5 6513284 6513932 + 1.33333 NA Intergenic MER101-int|LTR|ERV1 64749 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 157.667-33 chr2 46014339 46014600 + 1.33333 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -282938 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 387.666 chr4 37358742 37359138 + 1.33333 NA intron (NM_001144990, intron 3 of 6) intron (NM_001144990, intron 3 of 6) -94985 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 259.833-16 chr8 72864592 72864870 + 1.33333 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 132686 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 144-62 chr5 113362221 113362450 + 1.33333 NA intron (NM_001085377, intron 2 of 18) L1MEd|LINE|L1 -67397 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 350.833-3 chr6 113342885 113343322 + 1.33333 NA Intergenic Intergenic 90344 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 264.333-17 chr9 27068043 27068647 + 1.33333 NA Intergenic Intergenic -40796 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 386.666 chr14 58696328 58696857 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR 57755 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 155-25 chr14 60120090 60120299 + 1.33333 NA intron (NM_001330177, intron 7 of 10) MER68|LTR|ERVL 28271 NM_001330177 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 243-13 chr15 38782243 38782528 + 1.33333 NA Intergenic ERVL-E-int|LTR|ERVL 85787 NR_160786 228-14 chr18 2764414 2764769 + 1.33333 NA intron (NM_015295, intron 37 of 47) MER2|DNA|TcMar-Tigger -82415 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 219-19 chr3 137300578 137300779 + 1.33333 NA Intergenic L1MEd|LINE|L1 342695 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 152.666-3 chr15 99252152 99252360 + 1.33333 NA intron (NR_135755, intron 1 of 8) intron (NR_135755, intron 1 of 8) 775 NM_001321679 123355 Hs.578684 NM_144598 ENSG00000168904 LRRC28 - leucine rich repeat containing 28 protein-coding 276.833-2 chr11 112522309 112522628 + 1.33333 NA intron (NR_120559, intron 2 of 2) intron (NR_120559, intron 2 of 2) 33334 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 212-38 chr8 29555842 29556253 + 1.33333 NA Intergenic Intergenic 192062 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 167-59 chr7 123152974 123153212 + 1.33333 NA intron (NM_001324400, intron 7 of 17) intron (NM_001324400, intron 7 of 17) 46876 NM_022444 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 164.666-3 chr9 32194826 32194968 + 1.33333 NA Intergenic Charlie1a|DNA|hAT-Charlie -189706 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 395.333-6 chr4 166584233 166584605 + 1.33333 NA Intergenic Zaphod|DNA|hAT-Tip100 650007 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 338.333-10 chr9 85088315 85088705 + 1.33333 NA Intergenic L1PA13|LINE|L1 382609 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 120.5-75 chr6 50010363 50010523 + 1.33333 NA intron (NM_001037728, intron 1 of 1) intron (NM_001037728, intron 1 of 1) 11538 NM_001037728 245913 Hs.571093 NM_001037497 ENSG00000203970 DEFB110 DEFB-10|DEFB-11|DEFB111 defensin beta 110 protein-coding 267.333 chr1 74066911 74067255 + 1.33333 NA intron (NM_001105659, intron 6 of 7) MLT1J2-int|LTR|ERVL-MaLR 131093 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 140.5-53 chr4 90336243 90336373 + 1.33333 NA intron (NM_207491, intron 3 of 7) intron (NM_207491, intron 3 of 7) 101277 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 355.5-7 chr6 74897101 74897709 + 1.33333 NA Intergenic L1MA4|LINE|L1 231377 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 457.666-2 chr8 27175052 27175484 + 1.33333 NA Intergenic Intergenic 83136 NM_001283054 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 356.333-4 chr5 72699445 72699867 + 1.33333 NA Intergenic L1ME1|LINE|L1 -38987 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 186-26 chr22 31752791 31752980 + 1.33333 NA Intergenic Intergenic -1083 NM_001364318 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 170-64 chr6 148187677 148187881 + 1.33333 NA Intergenic MIRb|SINE|MIR -84549 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 217.5-13 chr15 65131870 65132092 + 1.33333 NA intron (NM_005707, intron 1 of 4) MIRb|SINE|MIR 1827 NM_005707 10081 Hs.458596 NM_005707 ENSG00000090470 PDCD7 ES18|HES18 programmed cell death 7 protein-coding 215-12 chr13 49465277 49465491 + 1.33333 NA intron (NM_031915, intron 5 of 14) intron (NM_031915, intron 5 of 14) 21110 NM_001320699 83852 Hs.631789 NM_031915 ENSG00000136169 SETDB2 C13orf4|CLLD8|CLLL8|KMT1F SET domain bifurcated histone lysine methyltransferase 2 protein-coding 233.333-13 chr15 25856958 25857401 + 1.33333 NA intron (NM_024490, intron 1 of 20) AluJo|SINE|Alu 6023 NM_024490 57194 Hs.638517 NM_024490 ENSG00000206190 ATP10A ATP10C|ATPVA|ATPVC ATPase phospholipid transporting 10A (putative) protein-coding 137.667-11 chr10 54417648 54417836 + 1.33333 NA intron (NM_001142773, intron 2 of 31) intron (NM_001142773, intron 2 of 31) -68488 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 136.667-103 chr8 65387908 65388079 + 1.33333 NA Intergenic Intergenic 174673 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 301.333-12 chr9 38103420 38103835 + 1.33333 NA Intergenic L1MB7|LINE|L1 -34400 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 465.5-2 chr5 173921526 173922153 + 1.33333 NA intron (NM_001308193, intron 2 of 7) intron (NM_001308193, intron 2 of 7) 28788 NM_001308193 80315 Hs.127126 NM_030627 ENSG00000113742 CPEB4 CPE-BP4|hCPEB-4 cytoplasmic polyadenylation element binding protein 4 protein-coding 233.667-13 chr2 78713082 78713410 + 1.33333 NA Intergenic HAL1|LINE|L1 167715 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 307.833-5 chr2 165899104 165899469 + 1.33333 NA intron (NM_024753, intron 21 of 28) intron (NM_024753, intron 21 of 28) -27345 NR_045375 100506124 Hs.709870 NR_045375 LOC100506124 - uncharacterized LOC100506124 ncRNA 257.333-17 chr5 96689345 96689801 + 1.33333 NA intron (NM_001330629, intron 2 of 30) intron (NM_001330629, intron 2 of 30) -13087 NM_001330632 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 137-69 chr3 113801707 113801899 + 1.33333 NA intron (NM_001690, intron 12 of 14) intron (NM_001690, intron 12 of 14) -36985 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 159.667-20 chr11 13518559 13518774 + 1.33333 NA Intergenic L1MC5a|LINE|L1 -22491 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 389.333-2 chr10 100013303 100013693 + 1.33333 NA Intergenic LTR29|LTR|ERV1 -3551 NM_015221 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 230.166-2 chr6 68262231 68262498 + 1.33333 NA intron (NR_125854, intron 3 of 3) intron (NR_125854, intron 3 of 3) 67535 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 195-51 chr9 75924012 75924198 + 1.33333 NA intron (NR_120409, intron 1 of 19) MLT1D|LTR|ERVL-MaLR 33432 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 177.333-15 chr12 54531903 54532147 + 1.33333 NA intron (NM_001184976, intron 25 of 30) intron (NM_001184976, intron 25 of 30) -17368 NM_001288768 5153 Hs.530871 NM_000924 ENSG00000123360 PDE1B HEL-S-79p|PDE1B1|PDES1B phosphodiesterase 1B protein-coding 279.333-12 chr5 127768761 127769173 + 1.33333 NA intron (NM_001317938, intron 3 of 6) intron (NM_001317938, intron 3 of 6) 65578 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 201.666 chr17 59070275 59070459 + 1.33333 NA intron (NR_148346, intron 9 of 23) intron (NR_148346, intron 9 of 23) 36513 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 380-3 chr5 113182680 113183460 + 1.33333 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 111868 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 150.666-3 chr2 146866155 146866294 + 1.33333 NA Intergenic Intergenic 279167 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 442-2 chr1 188470901 188471382 + 1.33333 NA Intergenic L1M5|LINE|L1 1027513 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 435.833-2 chr2 57977603 57978120 + 1.33333 NA intron (NM_001288838, intron 1 of 15) L1PA15|LINE|L1 -68781 NM_001288836 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 357.333-7 chr6 109541601 109542049 + 1.33333 NA intron (NM_001145128, intron 27 of 40) MER5B|DNA|hAT-Charlie -58588 NM_014797 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 220.166 chr3 107385969 107386209 + 1.33333 NA Intergenic Intergenic -3930 NR_126332 101929579 Hs.552750 NR_126332 LOC101929579 - uncharacterized LOC101929579 ncRNA 254.999-2 chr20 56067443 56067745 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -62075 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 215.666 chr16 9774239 9774551 + 1.33333 NA intron (NM_001134408, intron 11 of 13) intron (NM_001134408, intron 11 of 13) -318890 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 139.833-4 chr10 58020803 58021011 + 1.33333 NA Intergenic L1PB2|LINE|L1 246987 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 223.333-9 chr11 82341736 82342086 + 1.33333 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 62002 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 187.667-53 chr8 19275045 19275195 + 1.33333 NA Intergenic Intergenic -29598 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 204.667-39 chr6 41506249 41506627 + 1.33333 NA intron (NR_120347, intron 2 of 2) intron (NR_120347, intron 2 of 2) 3994 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 215-8 chr10 111685684 111686052 + 1.33333 NA Intergenic Intergenic 497897 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 349.5 chr10 17793608 17794068 + 1.33333 NA intron (NM_001098844, intron 3 of 3) intron (NM_001098844, intron 3 of 3) -15510 NM_002438 4360 Hs.75182 NM_002438 ENSG00000260314 MRC1 CD206|CLEC13D|CLEC13DL|MMR|MRC1L1|bA541I19.1|hMR mannose receptor C-type 1 protein-coding 351.333 chr1 188748511 188748805 + 1.33333 NA Intergenic MSTA-int|LTR|ERVL-MaLR 1305030 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 192.667-48 chr7 20604009 20604275 + 1.33333 NA Intergenic MER74A|LTR|ERVL -11525 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 153.5-19 chr12 62916342 62916683 + 1.33333 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 18638 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 114-49 chr17 14564728 14564880 + 1.33333 NA Intergenic L1M5|LINE|L1 261064 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 205-22 chr20 59919152 59919572 + 1.33333 NA intron (NM_014258, intron 6 of 44) intron (NM_014258, intron 6 of 44) 14275 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 275.333-22 chr7 18377763 18378178 + 1.33333 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 87878 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 192.833-7 chr10 11754858 11755023 + 1.33333 NA intron (NM_024693, intron 3 of 4) intron (NM_024693, intron 3 of 4) 12558 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 277.499 chr2 53799421 53799708 + 1.33333 NA intron (NM_015701, intron 6 of 13) L2c|LINE|L2 12520 NM_015701 27248 Hs.438336 NM_015701 ENSG00000068912 ERLEC1 C2orf30|CIM|CL24936|CL25084|HEL117|XTP3-B|XTP3TPB endoplasmic reticulum lectin 1 protein-coding 287.333-2 chr14 26125385 26125806 + 1.33333 NA Intergenic Intergenic 427835 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 225.5-31 chr2 103733949 103734141 + 1.33333 NA Intergenic L1PA15|LINE|L1 674287 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 265.5-13 chr9 28420491 28420807 + 1.33333 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 298656 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 351.166 chr14 64920697 64921118 + 1.33333 NA intron (NM_001204063, intron 1 of 3) L1ME2|LINE|L1 6452 NM_001202558 100529261 Hs.325531 NM_001202558 ENSG00000125954 CHURC1-FNTB FNTB|FTase-beta CHURC1-FNTB readthrough protein-coding 280.667-13 chr2 153123762 153124194 + 1.33333 NA Intergenic MLT1F2|LTR|ERVL-MaLR 354784 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 131.667-52 chr2 28066224 28066427 + 1.33333 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 69958 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 281.666-2 chr2 107188398 107188802 + 1.33333 NA intron (NR_049853, intron 2 of 3) L1PA13|LINE|L1 160925 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 348.5-5 chr4 138213695 138214419 + 1.33333 NA intron (NM_014331, intron 6 of 11) intron (NM_014331, intron 6 of 11) 28292 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 160.833-16 chr12 23275138 23275360 + 1.33333 NA Intergenic L1ME5|LINE|L1 99613 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 187-21 chr20 9890051 9890215 + 1.33333 NA Intergenic LTR67B|LTR|ERVL -51057 NM_177990 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 163.833-19 chr14 63005050 63005205 + 1.33333 NA intron (NM_139318, intron 3 of 10) intron (NM_139318, intron 3 of 10) 40331 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 125-54 chr3 116385152 116385325 + 1.33333 NA intron (NM_001318915, intron 1 of 8) MIR3|SINE|MIR 25214 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 170.666-3 chr14 47701166 47701389 + 1.33333 NA Intergenic MER30|DNA|hAT-Charlie -26323 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 189.166 chr12 31816644 31816837 + 1.33333 NA Intergenic L1MC4|LINE|L1 -24442 NM_001013699 440093 Hs.448697 NM_001013699 ENSG00000188375 H3F3C H3.5 H3 histone family member 3C protein-coding 157-7 chr1 153631243 153631404 + 1.33333 NA intron (NM_001024210, intron 2 of 4) MIRb|SINE|MIR -2659 NM_001317077 26097 Hs.611057 NM_015607 ENSG00000160679 CHTOP C10orf77|C1orf77|FL-SRAG|FOP|SRAG|SRAG-3|SRAG-5|pp7704 chromatin target of PRMT1 protein-coding 242.667-31 chr9 25268366 25268763 + 1.33333 NA Intergenic Intergenic 410294 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 218.666-6 chr5 136845438 136845674 + 1.33333 NA Intergenic Intergenic -282641 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 232.833-22 chr9 37385861 37386077 + 1.33333 NA Intergenic L1MB2|LINE|L1 -36727 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 221.833-13 chr2 186969274 186969601 + 1.33333 NA Intergenic Intergenic -120267 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 188.833-40 chr8 79945687 79946061 + 1.33333 NA intron (NM_014018, intron 2 of 2) MIR|SINE|MIR -74137 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 184.333-60 chr7 90262612 90263185 + 1.33333 NA intron (NM_001039706, intron 4 of 22) (TTTAATA)n|Simple_repeat|Simple_repeat 17724 NM_001039706 79846 Hs.521014 NM_024788 ENSG00000105792 CFAP69 C7orf63|FAP69|SPGF24 cilia and flagella associated protein 69 protein-coding 281.834-2 chr13 87523873 87524108 + 1.33333 NA intron (NR_033829, intron 1 of 5) intron (NR_033829, intron 1 of 5) 94750 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 382.666 chr13 34414848 34415209 + 1.33333 NA intron (NR_146542, intron 1 of 3) LTR81B|LTR|Gypsy 66985 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 201-21 chr18 44923803 44923988 + 1.33333 NA intron (NM_015559, intron 3 of 5) intron (NM_015559, intron 3 of 5) 46271 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 233.999-2 chr3 90143021 90143284 + 1.33333 NA Intergenic Intergenic 1035531 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 196-46 chr3 183506747 183507011 + 1.33333 NA intron (NM_130446, intron 3 of 6) L2c|LINE|L2 -41856 NR_046687 100874019 NR_046687 ENSG00000242522 KLHL6-AS1 - KLHL6 antisense RNA 1 ncRNA 212-28 chr4 124698649 124698930 + 1.33333 NA intron (NM_001167882, intron 1 of 3) L1M5|LINE|L1 13943 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 331.333-5 chr2 133338112 133338481 + 1.33333 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 72101 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 172.833-25 chr2 76659648 76659866 + 1.33333 NA Intergenic L1MC1|LINE|L1 -326208 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 226.5-33 chr8 42027393 42027635 + 1.33333 NA intron (NM_001305878, intron 2 of 13) L1MA4A|LINE|L1 -24236 NR_136589 105379393 Hs.742878 NR_136589 LOC105379393 - uncharacterized LOC105379393 ncRNA 310-13 chr9 118427537 118427853 + 1.33333 NA Intergenic Intergenic -251976 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 392.167 chr12 54878852 54879453 + 1.33333 NA Intergenic L1M5|LINE|L1 24636 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 183.5-17 chr16 53968014 53968369 + 1.33333 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) -71202 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 402-3 chr2 80884599 80885538 + 1.33333 NA Intergenic Intergenic 571689 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 254.334-2 chr11 10810561 10810897 + 1.33333 NA intron (NR_120540, intron 2 of 2) intron (NR_120540, intron 2 of 2) 1432 NR_120540 101928053 Hs.637773 NR_120540 ENSG00000246308 LOC101928053 - uncharacterized LOC101928053 ncRNA 318.333-4 chr20 19528935 19529203 + 1.33333 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -244473 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 159.333-28 chr15 44021624 44021795 + 1.33333 NA intron (NM_032892, intron 1 of 13) L1MB4|LINE|L1 -143538 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1 pseudo 141.166-2 chr18 6718089 6718205 + 1.33333 NA Intergenic Intergenic -11569 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 139-47 chr4 33703791 33704038 + 1.33333 NA Intergenic L1MB1|LINE|L1 335979 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 324 chr1 67755628 67755937 + 1.33333 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 70581 NM_001199742 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 168.666-4 chr6 123404826 123405067 + 1.33333 NA intron (NM_001251987, intron 12 of 20) intron (NM_001251987, intron 12 of 20) -34658 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 182-58 chrX 49028292 49028587 + 1.33333 NA TTS (NM_006521) TTS (NM_006521) 14918 NM_001282142 7030 Hs.730740 NM_006521 ENSG00000068323 TFE3 RCCP2|RCCX1|TFEA|bHLHe33 transcription factor binding to IGHM enhancer 3 protein-coding 224.5-22 chr7 84915926 84916257 + 1.33333 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 205840 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 238.666-5 chr4 171652518 171652713 + 1.33333 NA Intergenic L1M2|LINE|L1 -13852 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 276-8 chr14 81392933 81393204 + 1.33333 NA intron (NM_001366850, intron 4 of 7) intron (NM_001366850, intron 4 of 7) 34707 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 293.666-4 chr2 121352300 121352608 + 1.33333 NA intron (NM_015282, intron 36 of 38) intron (NM_015282, intron 36 of 38) -67252 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 188-64 chr8 74405460 74405648 + 1.33333 NA intron (NM_001362931, intron 5 of 5) intron (NM_001362931, intron 5 of 5) 55151 NM_001362931 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 322-6 chr7 46147232 46147622 + 1.33333 NA Intergenic Intergenic -226155 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 359.666 chr10 19546162 19546484 + 1.33333 NA intron (NM_001142308, intron 32 of 39) intron (NM_001142308, intron 32 of 39) 182227 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 290.833-6 chr7 25484957 25485394 + 1.33333 NA Intergenic Intergenic 177965 NR_157823 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 283.666-2 chr5 13076409 13076676 + 1.33333 NA Intergenic Intergenic -43656 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 254-19 chr4 58380132 58380413 + 1.33333 NA Intergenic Tigger3a|DNA|TcMar-Tigger 156056 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 206.666 chr10 111892545 111892751 + 1.33333 NA Intergenic L1MD1|LINE|L1 291117 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 118.333-55 chr2 170789896 170790010 + 1.33333 NA intron (NM_001289947, intron 2 of 4) L1MC5|LINE|L1 6162 NM_001289947 285141 Hs.443729 NM_001289947 ENSG00000204334 ERICH2 - glutamate rich 2 protein-coding 140.833-37 chr2 232017835 232018062 + 1.33333 NA intron (NR_046477, intron 3 of 18) L2c|LINE|L2 56235 NR_046477 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 295.333-12 chr4 128762688 128762991 + 1.33333 NA Intergenic L1ME4b|LINE|L1 -46861 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 307.333-6 chr2 115458972 115459661 + 1.33333 NA intron (NM_001321912, intron 4 of 25) AluSx|SINE|Alu 115501 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 149.333-45 chr2 3778834 3778980 + 1.33333 NA intron (NM_001287444, intron 9 of 10) intron (NM_001287444, intron 9 of 10) 72065 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 244.667-20 chr5 150883813 150884263 + 1.33333 NA intron (NM_001346557, intron 3 of 3) L1M1|LINE|L1 20945 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 134.667-39 chr17 59151537 59151966 + 1.33333 NA promoter-TSS (NR_029842) promoter-TSS (NR_029842) -530 NR_029842 407027 NR_029842 ENSG00000207996 MIR301A MIR301|MIRN301|MIRN301A|mir-301a microRNA 301a ncRNA 283.166 chr5 10925127 10925405 + 1.33333 NA Intergenic L3|LINE|CR1 -164032 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 262.666-2 chr18 63676338 63676648 + 1.33333 NA Intergenic Charlie2b|DNA|hAT-Charlie -14600 NM_006919 6317 Hs.227948 NM_006919 ENSG00000057149 SERPINB3 HsT1196|SCC|SCCA-1|SCCA-PD|SCCA1|SSCA1|T4-A serpin family B member 3 protein-coding 384.999-2 chr3 49131817 49132149 + 1.33333 NA intron (NM_002292, intron 4 of 31) L2c|LINE|L2 1067 NM_002292 3913 Hs.439726 NM_002292 ENSG00000172037 LAMB2 LAMS|NPHS5 laminin subunit beta 2 protein-coding 324.666-2 chr2 20098675 20099048 + 1.33333 NA Intergenic AluSx1|SINE|Alu -47233 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 217.666-3 chr5 67972855 67973064 + 1.33333 NA Intergenic MSTA|LTR|ERVL-MaLR 179746 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 314-2 chr10 85427336 85427771 + 1.33333 NA Intergenic Intergenic 5219 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 237.333-17 chr2 59587071 59587474 + 1.33333 NA Intergenic Intergenic 369564 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 132-73 chr5 63713484 63713604 + 1.33333 NA Intergenic Intergenic 248748 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 215.667-40 chr5 71724273 71724573 + 1.33333 NA Intergenic L1M6|LINE|L1 5148 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 253.333-21 chr8 95699602 95699922 + 1.33333 NA intron (NR_038205, intron 2 of 2) intron (NR_038205, intron 2 of 2) 248586 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 122.333-106 chr8 54083394 54083553 + 1.33333 NA intron (NM_001279356, intron 2 of 7) intron (NM_001279356, intron 2 of 7) 18081 NM_001279360 10434 Hs.744046 NM_006330 ENSG00000120992 LYPLA1 APT-1|APT1|LPL-I|LPL1|hAPT1 lysophospholipase 1 protein-coding 266.666 chr10 44510637 44510855 + 1.33333 NA Intergenic Intergenic -125649 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 327 chr10 27749189 27749683 + 1.33333 NA intron (NR_121652, intron 1 of 1) L1ME3G|LINE|L1 -3617 NM_173576 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 149.5-68 chr8 127727733 127727948 + 1.33333 NA intron (NR_117102, intron 1 of 3) intron (NR_117102, intron 1 of 3) 6127 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 305.333-14 chr8 125020453 125020795 + 1.33333 NA intron (NM_003129, intron 9 of 10) intron (NM_003129, intron 9 of 10) 22119 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 378.833-5 chr2 165290372 165290672 + 1.33333 NA intron (NM_001040143, intron 2 of 27) intron (NM_001040143, intron 2 of 27) -3533 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 194-33 chr2 145863447 145863664 + 1.33333 NA Intergenic Intergenic -723502 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 236.833-17 chr8 95103808 95104076 + 1.33333 NA intron (NR_148914, intron 9 of 11) intron (NR_148914, intron 9 of 11) -29843 NM_024613 79666 Hs.29724 NM_024613 ENSG00000175895 PLEKHF2 EAPF|PHAFIN2|ZFYVE18 pleckstrin homology and FYVE domain containing 2 protein-coding 194.333-20 chr2 63597277 63597572 + 1.33333 NA exon (NM_001199111, exon 4 of 9) exon (NM_001199111, exon 4 of 9) 8273 NM_001199111 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 321.333-4 chr14 25658806 25659089 + 1.33333 NA Intergenic LTR80B|LTR|ERVL -608650 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 263-15 chr7 42251277 42251563 + 1.33333 NA Intergenic MER1B|DNA|hAT-Charlie -14211 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 158.5-79 chr7 86522814 86522960 + 1.33333 NA Intergenic Charlie2a|DNA|hAT-Charlie -121022 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 263-12 chr4 32955828 32956108 + 1.33333 NA Intergenic Intergenic 604930 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 298.667-9 chr4 103128813 103129115 + 1.33333 NA intron (NM_001813, intron 42 of 48) L1MC1|LINE|L1 -29130 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 466.501-2 chr2 33651895 33652536 + 1.33333 NA Intergenic Intergenic -52853 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 373.167-2 chr2 35316192 35316542 + 1.33333 NA Intergenic MIR3|SINE|MIR -155038 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 277.333-9 chr2 200637611 200637926 + 1.33333 NA intron (NM_001159, intron 22 of 34) intron (NM_001159, intron 22 of 34) 51754 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 475.832 chr22 43817065 43817449 + 1.33333 NA Intergenic Intergenic -4952 NM_022785 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 450.667 chr8 131996894 131997781 + 1.33333 NA intron (NM_015137, intron 19 of 22) intron (NM_015137, intron 19 of 22) 62045 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 206.333-24 chr5 87552987 87553292 + 1.33333 NA Intergenic Intergenic -108903 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 160-11 chr10 32951317 32951457 + 1.33333 NA intron (NM_002211, intron 1 of 15) intron (NM_002211, intron 1 of 15) 6507 NM_133376 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 452.666 chr4 52016126 52016653 + 1.33333 NA intron (NM_001024611, intron 2 of 4) intron (NM_001024611, intron 2 of 4) 3974 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 348.333-3 chr5 82195433 82195810 + 1.33333 NA intron (NM_031482, intron 5 of 7) L1MB7|LINE|L1 82733 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 126.666 chr11 106339775 106339956 + 1.33333 NA Intergenic Intergenic 88458 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 390.333-2 chr14 65012725 65013749 + 1.33333 NA intron (NM_002028, intron 3 of 11) MER102b|DNA|hAT-Charlie 26342 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 144.5-93 chr9 94599534 94599685 + 1.33333 NA Intergenic L1MB3|LINE|L1 -5785 NM_003837 8789 Hs.61255 NM_003837 ENSG00000130957 FBP2 - fructose-bisphosphatase 2 protein-coding 166-19 chr12 64815269 64815522 + 1.33333 NA intron (NM_001330188, intron 3 of 13) intron (NM_001330188, intron 3 of 13) -9252 NM_001364838 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 204.333-52 chr8 17619483 17619715 + 1.33333 NA intron (NM_006207, intron 3 of 6) intron (NM_006207, intron 3 of 6) 43166 NM_006207 5157 Hs.458573 NM_006207 ENSG00000104213 PDGFRL PDGRL|PRLTS platelet derived growth factor receptor like protein-coding 290-3 chr16 8404742 8405170 + 1.33333 NA Intergenic Intergenic 184882 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 162.666 chr13 107708479 107708628 + 1.33333 NA intron (NM_001080396, intron 1 of 2) L2c|LINE|L2 126905 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 ncRNA 215.333 chr1 99686395 99686571 + 1.33333 NA intron (NM_017734, intron 3 of 7) intron (NM_017734, intron 3 of 7) 26470 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 218-2 chr1 192565183 192565530 + 1.33333 NA Intergenic Intergenic -10417 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 167.333-14 chr10 119588524 119588784 + 1.33333 NA intron (NM_001323964, intron 1 of 12) intron (NM_001323964, intron 1 of 12) 8375 NR_136662 7073 Hs.501203 NM_003252 ENSG00000151923 TIAL1 TCBP|TIAR TIA1 cytotoxic granule associated RNA binding protein like 1 protein-coding 218.666-5 chr4 29724124 29724293 + 1.33333 NA Intergenic Intergenic 509916 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 218-30 chr3 85006866 85007125 + 1.33333 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 48006 NM_001167674 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 117.333-6 chr1 72366809 72367043 + 1.33333 NA Intergenic Intergenic -84387 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 248.167-6 chr11 20137390 20137734 + 1.33333 NA Intergenic Intergenic 22913 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 381.333-2 chr11 76879298 76879772 + 1.33333 NA intron (NM_001300953, intron 1 of 9) L1ME2z|LINE|L1 18617 NM_018367 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 170.5-33 chr2 153492781 153493018 + 1.33333 NA Intergenic L1M5|LINE|L1 -14137 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 314.833 chr18 13596644 13596911 + 1.33333 NA intron (NM_181482, intron 4 of 5) L1M4b|LINE|L1 -14337 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 227.666-3 chr22 27923797 27924045 + 1.33333 NA intron (NR_026962, intron 2 of 2) intron (NR_026962, intron 2 of 2) -3309 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 259.5-6 chr15 71104374 71104751 + 1.33333 NA Intergenic MER4D|LTR|ERV1 -36887 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 185-45 chr6 53128191 53128427 + 1.33333 NA exon (NM_003643, exon 6 of 6) exon (NM_003643, exon 6 of 6) 20532 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 212.666-3 chr2 64069731 64069904 + 1.33333 NA Intergenic MER101-int|LTR|ERV1 -50389 NM_001005739 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 395-4 chr8 139684413 139684934 + 1.33333 NA intron (NR_104210, intron 1 of 3) L1M4|LINE|L1 18450 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 175.5-38 chr3 66942827 66943070 + 1.33333 NA Intergenic L1MA8|LINE|L1 -55359 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 155.666 chr12 5320057 5320218 + 1.33333 NA Intergenic L1MA5|LINE|L1 -76986 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 284.833-5 chr4 60944979 60945394 + 1.33333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 22567 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 211.166-5 chr6 145709678 145709879 + 1.33333 NA intron (NM_001360064, intron 1 of 3) intron (NM_001360064, intron 1 of 3) -22901 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 321.666-2 chr12 120769449 120769907 + 1.33333 NA intron (NM_139015, intron 6 of 10) AluSx1|SINE|Alu 43852 NM_000017 35 Hs.507076 NM_000017 ENSG00000122971 ACADS ACAD3|SCAD acyl-CoA dehydrogenase short chain protein-coding 209-37 chr4 104936756 104936942 + 1.33333 NA Intergenic Intergenic -209026 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 289.666-4 chr5 26862542 26862801 + 1.33333 NA Intergenic MIR|SINE|MIR 175915 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 140.667-6 chr1 218543002 218543185 + 1.33333 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) 32998 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 246.667-15 chr22 29140531 29140927 + 1.33333 NA intron (NM_001039570, intron 8 of 8) intron (NM_001039570, intron 8 of 8) -65167 NM_133455 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 298.333-5 chr13 54852542 54852803 + 1.33333 NA Intergenic Intergenic -321782 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 142.833-10 chr12 5955874 5956273 + 1.33333 NA intron (NM_000552, intron 47 of 51) Tigger3b|DNA|TcMar-Tigger -9841 NM_001278597 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 164.333-23 chr14 52112766 52113045 + 1.33333 NA Intergenic Arthur1B|DNA|hAT-Tip100 -43846 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 389.666 chr10 116403746 116404340 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -23804 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 269-13 chr5 24017036 24017326 + 1.33333 NA intron (NR_131245, intron 4 of 4) MLT1A|LTR|ERVL-MaLR 65833 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 218-46 chr8 87050135 87050482 + 1.33333 NA intron (NM_173538, intron 4 of 10) HUERS-P3-int|LTR|ERV1 183893 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 124.666-3 chr8 85162884 85163008 + 1.33333 NA Intergenic L1M4|LINE|L1 14095 NR_134311 102723322 Hs.535913 NR_134311 ENSG00000260493 LOC102723322 - uncharacterized LOC102723322 ncRNA 232.333-26 chr5 38151595 38152120 + 1.33333 NA non-coding (NR_134272, exon 2 of 2) non-coding (NR_134272, exon 2 of 2) 3377 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 209.166 chr2 56532102 56532350 + 1.33333 NA Intergenic Intergenic -346456 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 257.333-19 chr5 154114819 154115202 + 1.33333 NA Intergenic L2b|LINE|L2 -75723 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 459.332 chr20 50125430 50125892 + 1.33333 NA intron (NM_199129, intron 5 of 5) AluSc|SINE|Alu -9704 NM_199144 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 221.333-7 chr12 84855677 84855916 + 1.33333 NA Intergenic L1MA2|LINE|L1 57003 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 206.834-3 chr14 21684376 21684854 + 1.33333 NA Intergenic L2a|LINE|L2 -13598 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 192.666-3 chr2 187900092 187900300 + 1.33333 NA Intergenic Intergenic -345691 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 204.666-2 chr4 55440638 55440832 + 1.33333 NA intron (NM_004898, intron 21 of 22) intron (NM_004898, intron 21 of 22) 44778 NM_018475 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 255-15 chr3 88172527 88172776 + 1.33333 NA Intergenic ERVL-B4-int|LTR|ERVL 22692 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 344.666 chr1 94251880 94252220 + 1.33333 NA Intergenic Intergenic -4304 NM_001328664 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 117-71 chr3 191446344 191446597 + 1.33333 NA intron (NR_120606, intron 1 of 6) L1MA4|LINE|L1 -14693 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 194-17 chr13 79696437 79696661 + 1.33333 NA Intergenic Intergenic -107837 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 258.5-2 chr1 195525582 195526079 + 1.33333 NA Intergenic L1MA4|LINE|L1 562885 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 242-23 chr7 114423139 114423431 + 1.33333 NA intron (NR_033767, intron 1 of 17) intron (NR_033767, intron 1 of 17) -3217 NM_148899 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 209-11 chr10 57150720 57150964 + 1.33333 NA Intergenic L1MA3|LINE|L1 153717 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 194.666-4 chr13 109166572 109166774 + 1.33333 NA non-coding (NR_047700, exon 2 of 3) non-coding (NR_047700, exon 2 of 3) 630 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 349.666 chr2 115097699 115098125 + 1.33333 NA intron (NM_001178037, intron 1 of 25) LTR16A|LTR|ERVL 33339 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 387.667-5 chr8 105047632 105048365 + 1.33333 NA Intergenic L1MEg|LINE|L1 -270440 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 163.666 chr14 49739233 49739414 + 1.33333 NA intron (NM_172193, intron 10 of 12) intron (NM_172193, intron 10 of 12) -28830 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 283.333-7 chr3 87419138 87419472 + 1.33333 NA Intergenic Intergenic -142721 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 259-4 chr14 37315467 37315871 + 1.33333 NA intron (NM_138731, intron 10 of 13) L2a|LINE|L2 117732 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 284-5 chr2 125582700 125583051 + 1.33333 NA Intergenic Intergenic 535110 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 296.333-8 chr22 28147456 28148075 + 1.33333 NA intron (NM_001145418, intron 6 of 22) MIRb|SINE|MIR -227153 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 280.333-3 chr1 220433870 220434184 + 1.33333 NA Intergenic Intergenic -94109 NM_018650 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 192-49 chr8 17066252 17066433 + 1.33333 NA intron (NR_146233, intron 2 of 15) intron (NR_146233, intron 2 of 15) 39104 NR_146233 286097 Hs.403594 NM_181723 ENSG00000155970 MICU3 EFHA2 mitochondrial calcium uptake family member 3 protein-coding 286.333-2 chr14 53978163 53978481 + 1.33333 NA Intergenic (A)n|Simple_repeat|Simple_repeat -21431 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 323.667-7 chr5 3494588 3495046 + 1.33333 NA intron (NR_033898, intron 2 of 4) L1MD2|LINE|L1 9187 NR_104618 102467075 Hs.652949 NR_104618 ENSG00000250716 LINC01017 - long intergenic non-protein coding RNA 1017 ncRNA 300.833-6 chrX 109448265 109448575 + 1.33333 NA intron (NM_001522, intron 5 of 19) intron (NM_001522, intron 5 of 19) 33666 NM_001522 2986 Hs.123074 NM_001522 ENSG00000101890 GUCY2F CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 guanylate cyclase 2F, retinal protein-coding 307.667 chr1 57542176 57542428 + 1.33333 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -117381 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 118-29 chr13 80265279 80265454 + 1.33333 NA Intergenic Intergenic 74293 NM_001318537 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 194-54 chr7 77335799 77336043 + 1.33333 NA intron (NM_001350897, intron 18 of 29) intron (NM_001350897, intron 18 of 29) -79277 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 411.166 chr18 12953227 12953611 + 1.33333 NA intron (NM_031216, intron 2 of 8) L1ME1|LINE|L1 5408 NM_001013437 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 263.333-6 chr12 58540625 58540893 + 1.33333 NA Intergenic Intergenic -50943 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 150-74 chr6 144372932 144373063 + 1.33333 NA intron (NM_007124, intron 1 of 73) L1MB7|LINE|L1 -32658 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 209.666-3 chr9 95659633 95660000 + 1.33333 NA Intergenic Intergenic -142759 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 418.166 chr4 90994524 90994967 + 1.33333 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 759714 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 305.666-3 chr4 80789144 80789463 + 1.33333 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -241405 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 168.5-57 chr5 151196779 151197142 + 1.33333 NA intron (NM_015621, intron 4 of 8) L1MB5|LINE|L1 -15174 NR_160730 105378230 NR_160730 LOC105378230 - uncharacterized LOC105378230 ncRNA 309.166 chr7 114103565 114104171 + 1.33333 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 17541 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 388.833 chr14 40524576 40525089 + 1.33333 NA Intergenic Intergenic -429879 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 176.666-2 chr5 130010736 130010917 + 1.33333 NA intron (NM_175856, intron 2 of 2) L1PA15|LINE|L1 106361 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 333.333-5 chr8 104534275 104534574 + 1.33333 NA intron (NM_013437, intron 1 of 6) intron (NM_013437, intron 1 of 6) -49959 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 394.166 chr12 47125012 47125435 + 1.33333 NA intron (NM_001281429, intron 2 of 2) L1ME1|LINE|L1 -45264 NM_001370299 347902 Hs.121520 NM_181847 ENSG00000139211 AMIGO2 ALI1|AMIGO-2|DEGA adhesion molecule with Ig like domain 2 protein-coding 174.333-40 chr4 46170204 46170374 + 1.33333 NA Intergenic Intergenic -46235 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 263.667-22 chr9 38668412 38668694 + 1.33333 NA Intergenic Intergenic 47465 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 222.667-30 chr5 127443149 127443457 + 1.33333 NA intron (NM_001256545, intron 19 of 24) MIRb|SINE|MIR -74337 NM_130809 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 307.499 chr11 30095155 30095394 + 1.33333 NA Intergenic L1PA10|LINE|L1 -78244 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 174.666-4 chr8 88905735 88906036 + 1.33333 NA Intergenic L1MA1|LINE|L1 -578402 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 304.333 chr1 181593186 181593666 + 1.33333 NA intron (NM_001205293, intron 6 of 47) intron (NM_001205293, intron 6 of 47) 109909 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 177.834-6 chr9 31241023 31241465 + 1.33333 NA Intergenic Intergenic 140246 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 361.333-2 chr15 98737082 98737394 + 1.33333 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) -47188 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 346.333-7 chr5 126976804 126977234 + 1.33333 NA intron (NM_178450, intron 1 of 4) intron (NM_178450, intron 1 of 4) 53539 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 203.167-30 chr4 73688760 73689045 + 1.33333 NA Intergenic L1PREC2|LINE|L1 -51667 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 241.666-2 chr10 32925595 32925830 + 1.33333 NA intron (NM_002211, intron 6 of 15) intron (NM_002211, intron 6 of 15) 9846 NM_033668 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 238.333-27 chr7 82318503 82318708 + 1.33333 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 125172 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 271.666-4 chr3 63526610 63526942 + 1.33333 NA intron (NM_001130003, intron 3 of 5) intron (NM_001130003, intron 3 of 5) 23275 NR_046677 100874016 Hs.441275 NR_046677 ENSG00000241359 SYNPR-AS1 - SYNPR antisense RNA 1 ncRNA 234.166 chr11 115031170 115031608 + 1.33333 NA Intergenic L1MCb|LINE|L1 -302188 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 131.833-39 chr2 204568052 204568285 + 1.33333 NA intron (NM_205863, intron 1 of 21) Charlie1|DNA|hAT-Charlie 22693 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 198.5-9 chr14 61264316 61264594 + 1.33333 NA Intergenic Intergenic 16883 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 275.5-5 chr19 27910935 27911239 + 1.33333 NA intron (NR_146735, intron 4 of 7) intron (NR_146735, intron 4 of 7) -117147 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 119.833-58 chr3 113445984 113446146 + 1.33333 NA intron (NM_001331078, intron 17 of 17) intron (NM_001331078, intron 17 of 17) -4551 NM_018338 55779 Hs.584936 NM_018338 ENSG00000206530 CFAP44 SPGF20|WDR52 cilia and flagella associated protein 44 protein-coding 271.333-15 chr4 67413422 67413798 + 1.33333 NA Intergenic Charlie1|DNA|hAT-Charlie 8390 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 216-14 chr19 15743813 15744024 + 1.33333 NA Intergenic FordPrefect|DNA|hAT-Tip100 2525 NM_013938 26532 Hs.553524 NM_013938 ENSG00000171936 OR10H3 - olfactory receptor family 10 subfamily H member 3 protein-coding 222-36 chr9 26180160 26180481 + 1.33333 NA Intergenic L4_B_Mam|LINE|RTE-X 113645 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 326.666-2 chr15 26140061 26140390 + 1.33333 NA Intergenic Intergenic 24412 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 181-16 chr12 52485729 52485962 + 1.33333 NA Intergenic L1MC3|LINE|L1 7412 NM_005554 3853 Hs.700779 NM_005554 ENSG00000205420 KRT6A CK-6C|CK-6E|CK6A|CK6C|CK6D|K6A|K6C|K6D|KRT6C|KRT6D|PC3 keratin 6A protein-coding 307.333-7 chr3 34440957 34441375 + 1.33333 NA Intergenic L1MA9|LINE|L1 642536 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 114.167-11 chr11 16897842 16897985 + 1.33333 NA intron (NM_001329630, intron 3 of 26) intron (NM_001329630, intron 3 of 26) 28109 NR_145810 109623465 NR_145810 SNORD147 - small nucleolar RNA, C/D box 147 snoRNA 224.666-9 chr5 133567572 133567825 + 1.33333 NA intron (NM_015082, intron 2 of 15) intron (NM_015082, intron 2 of 15) 44843 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 116.666-2 chr11 110536477 110536591 + 1.33333 NA Intergenic L1ME3G|LINE|L1 106586 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 217.834-2 chr11 84635680 84635998 + 1.33333 NA intron (NM_001351274, intron 5 of 26) MIRb|SINE|MIR 85103 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 160.333-52 chr5 146522214 146522368 + 1.33333 NA Intergenic Intergenic -6178 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 202.666 chr1 217559379 217559535 + 1.33333 NA intron (NM_018040, intron 5 of 9) intron (NM_018040, intron 5 of 9) 71633 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 176-18 chr2 200004674 200004884 + 1.33333 NA Intergenic Intergenic -49288 NR_109905 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 226.666-5 chr8 96709972 96710224 + 1.33333 NA intron (NM_016134, intron 1 of 7) L1PB3|LINE|L1 64856 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 297.166-3 chr4 143653642 143653883 + 1.33333 NA intron (NM_001168235, intron 2 of 7) MER5B|DNA|hAT-Charlie 46913 NM_001168235 166752 Hs.252714 NM_001168235 ENSG00000183090 FREM3 - FRAS1 related extracellular matrix 3 protein-coding 228.333-30 chr6 46475807 46475998 + 1.33333 NA intron (NM_001251973, intron 1 of 4) intron (NM_001251973, intron 1 of 4) 15421 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 344.666-4 chr17 51874446 51874818 + 1.33333 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 284082 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 226.833-11 chr2 133576526 133576827 + 1.33333 NA Intergenic Intergenic -8213 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 183-41 chr4 59395280 59395435 + 1.33333 NA Intergenic L1M4|LINE|L1 381784 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 275-3 chr11 56112921 56113305 + 1.33333 NA Intergenic L1PA13|LINE|L1 8070 NM_001005200 390151 Hs.553744 NM_001005200 ENSG00000181767 OR8H2 OR11-171 olfactory receptor family 8 subfamily H member 2 protein-coding 336.333-3 chr3 1990559 1990931 + 1.33333 NA Intergenic Intergenic -108058 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 140.333-30 chr19 53102848 53103133 + 1.33333 NA intron (NM_001322126, intron 1 of 6) CpG 432 NM_001322125 90338 Hs.655967 NM_033288 ENSG00000170949 ZNF160 F11|HKr18|HZF5|KR18 zinc finger protein 160 protein-coding 355.999 chr5 20619801 20620308 + 1.33333 NA intron (NR_149120, intron 1 of 11) intron (NR_149120, intron 1 of 11) -4519 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 351.666-2 chr9 97038082 97038719 + 1.33333 NA intron (NM_001201575, intron 1 of 7) intron (NM_001201575, intron 1 of 7) 742 NM_001333 1515 Hs.610096 NM_001333 ENSG00000136943 CTSV CATL2|CTSL2|CTSU cathepsin V protein-coding 193.833-19 chr17 20909812 20909995 + 1.33333 NA intron (NR_160710, intron 3 of 4) intron (NR_160710, intron 3 of 4) -11125 NR_160711 440416 Hs.661076 NR_104185 ENSG00000233098 CCDC144NL-AS1 - CCDC144NL antisense RNA 1 ncRNA 314 chr10 24463152 24463479 + 1.33333 NA intron (NM_001321681, intron 1 of 13) intron (NM_001321681, intron 1 of 13) -3216 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 157-85 chr8 137257884 137258123 + 1.33333 NA Intergenic Intergenic 155585 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 237-25 chr8 123661677 123661923 + 1.33333 NA Intergenic L1M6|LINE|L1 -7999 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 163-67 chrX 87701023 87701367 + 1.33333 NA Intergenic L2a|LINE|L2 183393 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 223-3 chr10 60053109 60053297 + 1.33333 NA intron (NM_001204403, intron 42 of 43) intron (NM_001204403, intron 42 of 43) 87813 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 305.333 chr1 115271000 115271302 + 1.33333 NA Intergenic Intergenic -11883 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 144.166-3 chr5 44601604 44601915 + 1.33333 NA Intergenic L3|LINE|CR1 -91477 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 363.5-2 chr2 208437683 208438154 + 1.33333 NA intron (NM_005048, intron 4 of 12) intron (NM_005048, intron 4 of 12) 31088 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 157.333-57 chr5 27087427 27087574 + 1.33333 NA Intergenic Intergenic -48914 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 296.666 chr1 220434500 220434812 + 1.33333 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -93480 NM_018650 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 136.666-2 chr2 132887020 132887138 + 1.33333 NA intron (NM_207481, intron 8 of 17) L1MC4|LINE|L1 -28478 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 185.833-18 chr2 54901419 54901613 + 1.33333 NA intron (NM_001039753, intron 21 of 40) intron (NM_001039753, intron 21 of 40) 108756 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 152.666 chr1 96347057 96347196 + 1.33333 NA intron (NR_110693, intron 3 of 5) L1MEd|LINE|L1 26999 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 176.666-4 chr9 22310244 22310425 + 1.33333 NA Intergenic LTR8B|LTR|ERV1 -136490 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 118.166 chr15 34031605 34031757 + 1.33333 NA intron (NM_020371, intron 1 of 5) intron (NM_020371, intron 1 of 5) 7523 NM_020371 57099 Hs.555966 NM_020371 ENSG00000169857 AVEN PDCD12 apoptosis and caspase activation inhibitor protein-coding 228.5-7 chr12 46952416 46952715 + 1.33333 NA Intergenic Intergenic -126568 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 316-8 chr5 54650088 54650406 + 1.33333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 53077 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 275.5-14 chr9 102998375 102998695 + 1.33333 NA intron (NM_001340, intron 1 of 7) intron (NM_001340, intron 1 of 7) 3202 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 252.666-3 chr14 60886883 60887192 + 1.33333 NA intron (NM_001177963, intron 6 of 6) L1M4c|LINE|L1 94042 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 339.5 chr1 103315971 103316382 + 1.33333 NA Intergenic Intergenic -207654 NR_134980 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 233.833-10 chr4 30851517 30851866 + 1.33333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 131322 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 185-13 chr13 90866028 90866353 + 1.33333 NA Intergenic Intergenic 60407 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 265.333-24 chr8 135347155 135347572 + 1.33333 NA Intergenic L1ME3Cz|LINE|L1 -110093 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 152.667-60 chr3 152607055 152607272 + 1.33333 NA Intergenic Intergenic -227968 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 543.833 chr8 134120225 134120818 + 1.33333 NA Intergenic Intergenic 234025 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 260.166 chr11 57076591 57076876 + 1.33333 NA Intergenic Intergenic 39199 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 161.833-22 chr2 197757441 197757625 + 1.33333 NA intron (NM_033030, intron 7 of 10) L1MB8|LINE|L1 27786 NM_001284362 66037 Hs.169797 NM_033030 ENSG00000152430 BOLL BOULE boule homolog, RNA binding protein protein-coding 252.667-29 chr8 124097989 124098306 + 1.33333 NA intron (NM_001039112, intron 37 of 40) intron (NM_001039112, intron 37 of 40) -57365 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 295.999-3 chr3 35570838 35571227 + 1.33333 NA Intergenic Intergenic -68493 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 332-5 chr3 65584782 65585212 + 1.33333 NA intron (NM_001365904, intron 2 of 24) intron (NM_001365904, intron 2 of 24) -308819 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 268.5-16 chr4 173745530 173745742 + 1.33333 NA Intergenic Intergenic -151637 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 238.5-9 chr12 14929646 14929944 + 1.33333 NA promoter-TSS (NM_001300784) promoter-TSS (NM_001300784) -670 NM_001300784 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 157-75 chr7 34833140 34833323 + 1.33333 NA intron (NM_207172, intron 5 of 8) intron (NM_207172, intron 5 of 8) 1100 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 165.333-30 chr2 46433485 46433630 + 1.33333 NA intron (NR_103805, intron 1 of 3) intron (NR_103805, intron 1 of 3) 4367 NR_103805 101805491 Hs.304781 NR_103805 ENSG00000187600 LINC02583 - long intergenic non-protein coding RNA 2583 ncRNA 262.5-4 chr12 75169475 75169682 + 1.33333 NA intron (NM_001260499, intron 2 of 3) intron (NM_001260499, intron 2 of 3) 40170 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 321.333-5 chr22 47520037 47520382 + 1.33333 NA Intergenic MER63A|DNA|hAT-Blackjack -33098 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 227.666-4 chr4 100258971 100259396 + 1.33333 NA Intergenic Intergenic -68715 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 228.166-3 chr7 7543117 7543331 + 1.33333 NA Intergenic MER63C|DNA|hAT-Blackjack -7351 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 236.834-13 chr7 103592997 103593305 + 1.33333 NA intron (NM_005045, intron 27 of 64) intron (NM_005045, intron 27 of 64) -146944 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 260.333-15 chr5 50976536 50976850 + 1.33333 NA Intergenic Intergenic -6506 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 267.666-3 chr5 145721212 145721592 + 1.33333 NA Intergenic L1MC4a|LINE|L1 113940 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 200-35 chr2 90191512 90191676 + 1.33333 NA Intergenic Intergenic -553687 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 313.333-9 chr5 175711089 175711456 + 1.33333 NA TTS (NM_001367711) TTS (NM_001367711) 53201 NR_160284 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 298.999 chr14 47266891 47267294 + 1.33333 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 76154 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 193.666-2 chr21 30124006 30124307 + 1.33333 NA Intergenic MIRb|SINE|MIR 42649 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 211.333-17 chr16 49069421 49069672 + 1.33333 NA Intergenic L1MEf|LINE|L1 212292 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 142.667-72 chr3 152674803 152675010 + 1.33333 NA Intergenic Intergenic -160225 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 178.167-20 chr18 8093165 8093381 + 1.33333 NA intron (NM_002845, intron 11 of 30) intron (NM_002845, intron 11 of 30) 273761 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 148-73 chr6 64585655 64585829 + 1.33333 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) -715676 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 227.333-11 chr14 35015656 35015928 + 1.33333 NA intron (NM_003136, intron 11 of 15) intron (NM_003136, intron 11 of 15) -29115 NM_001079519 283635 Hs.446357 NM_173607 ENSG00000151327 FAM177A1 C14orf24 family with sequence similarity 177 member A1 protein-coding 376.833 chr1 103956822 103957590 + 1.33333 NA Intergenic L1MC1|LINE|L1 -115817 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 250.333-15 chr3 56871126 56871353 + 1.33333 NA intron (NM_001128615, intron 4 of 12) intron (NM_001128615, intron 4 of 12) 45197 NM_001289698 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 265.166-2 chr13 102672567 102672837 + 1.33333 NA intron (NM_001367947, intron 27 of 29) intron (NM_001367947, intron 27 of 29) 21819 NM_001010977 196541 Hs.508623 NM_001010977 ENSG00000139780 METTL21C C13orf39 methyltransferase like 21C protein-coding 226-2 chr12 39324233 39324513 + 1.33333 NA intron (NM_001173464, intron 26 of 37) intron (NM_001173464, intron 26 of 37) 118747 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 281.999 chr2 149619175 149619578 + 1.33333 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -31601 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 133.334-4 chr2 156359515 156359935 + 1.33333 NA Intergenic Intergenic -17605 NR_147695 440918 Hs.641142 NR_147695 FLJ46875 - uncharacterized LOC440918 ncRNA 130-25 chr12 26018169 26018381 + 1.33333 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) -34289 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 273.166-2 chr10 95500250 95500588 + 1.33333 NA intron (NM_001290295, intron 1 of 24) MER33|DNA|hAT-Charlie -59239 NM_001034957 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 147.333-12 chr11 75845946 75846146 + 1.33333 NA intron (NM_003369, intron 1 of 14) intron (NM_003369, intron 1 of 14) 30836 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 363-5 chr4 161398589 161399086 + 1.33333 NA intron (NM_001128428, intron 14 of 14) intron (NM_001128428, intron 14 of 14) -623896 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 246.667-22 chr5 152505665 152506009 + 1.33333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -100558 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 373.333-4 chr4 53175572 53175923 + 1.33333 NA intron (NM_152540, intron 4 of 8) intron (NM_152540, intron 4 of 8) 190314 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 191.5-48 chr6 153261238 153261445 + 1.33333 NA Intergenic Intergenic -130059 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 118-93 chr5 55459014 55459114 + 1.33333 NA intron (NR_103485, intron 4 of 6) L1ME1|LINE|L1 49862 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 263.333-18 chr5 30651889 30652173 + 1.33333 NA Intergenic Intergenic -541655 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 282.666-2 chr15 96533811 96534229 + 1.33333 NA Intergenic Intergenic 200255 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 194-15 chr12 127441161 127441358 + 1.33333 NA Intergenic L1MA7|LINE|L1 -101187 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 242.666 chr1 103813529 103813773 + 1.33333 NA Intergenic Intergenic 63810 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 290.333-7 chr22 28256696 28257139 + 1.33333 NA intron (NM_001145418, intron 5 of 22) AluJr|SINE|Alu -202952 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 318.666-5 chr6 83611683 83612144 + 1.33333 NA intron (NM_001242794, intron 9 of 19) AluY|SINE|Alu 96646 NM_001363677 9892 Hs.368046 NM_014841 ENSG00000065609 SNAP91 AP180|CALM synaptosome associated protein 91 protein-coding 259.666-2 chr2 152709258 152709557 + 1.33333 NA intron (NM_001365601, intron 2 of 24) Tigger4a|DNA|TcMar-Tigger 8054 NM_001365596 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 270-4 chr14 56799833 56800192 + 1.33333 NA non-coding (NR_073036, exon 2 of 2) non-coding (NR_073036, exon 2 of 2) 5655 NM_172337 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 295.999 chr18 5218443 5218767 + 1.33333 NA Intergenic Intergenic 19424 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 138-13 chr10 43479427 43479646 + 1.33333 NA intron (NM_001355444, intron 3 of 3) Looper|DNA|PiggyBac 42425 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 161.333-54 chr4 85299546 85299723 + 1.33333 NA Intergenic Intergenic -175516 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 187.167-17 chr2 74646402 74646647 + 1.33333 NA intron (NM_001321739, intron 1 of 10) Tigger6a|DNA|TcMar-Tigger 1513 NM_138804 130951 Hs.348645 NM_138804 ENSG00000159374 M1AP C2orf65|D6Mm5e|SPATA37 meiosis 1 associated protein protein-coding 270-6 chr2 165410455 165410723 + 1.33333 NA Intergenic Intergenic -59109 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 193.833-31 chr5 175548729 175549089 + 1.33333 NA Intergenic LTR45|LTR|ERV1 70349 NM_001322977 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 SLC56A1|TCC sideroflexin 1 protein-coding 338.166-2 chr5 164358583 164358908 + 1.33333 NA Intergenic MLT1A-int|LTR|ERVL-MaLR 108657 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 302.5-14 chr9 88789676 88790140 + 1.33333 NA Intergenic L1MC4|LINE|L1 -44003 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 355.667-8 chr6 68828005 68828384 + 1.33333 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 192912 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 184.333-37 chr3 78901426 78901970 + 1.33333 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 117761 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 204.666 chr1 156059428 156059683 + 1.33333 NA Intergenic Intergenic -1605 NR_133653 57111 Hs.632469 NM_020387 ENSG00000132698 RAB25 CATX-8|RAB11C RAB25, member RAS oncogene family protein-coding 174.333-2 chr1 167092205 167092378 + 1.33333 NA Intergenic Intergenic -1784 NM_001080426 92235 Hs.632462 NM_001080426 ENSG00000198842 DUSP27 - dual specificity phosphatase 27, atypical protein-coding 219-29 chr8 17474765 17475050 + 1.33333 NA Intergenic L1M3c|LINE|L1 -22181 NM_001370338 6542 Hs.448520 NM_003046 ENSG00000003989 SLC7A2 ATRC2|CAT2|HCAT2 solute carrier family 7 member 2 protein-coding 287.999 chr5 158192907 158193145 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR 216747 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 244.166 chr1 85191799 85192019 + 1.33333 NA intron (NM_032184, intron 1 of 6) intron (NM_032184, intron 1 of 6) 9107 NM_032184 84144 Hs.533853 NM_032184 ENSG00000097096 SYDE2 - synapse defective Rho GTPase homolog 2 protein-coding 146.166 chr1 100451426 100451559 + 1.33333 NA intron (NM_001319212, intron 7 of 13) intron (NM_001319212, intron 7 of 13) -86647 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 154.166-2 chr8 90542267 90542442 + 1.33333 NA Intergenic L1MA8|LINE|L1 63709 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 406.666 chr2 187147454 187147829 + 1.33333 NA Intergenic L1M4|LINE|L1 -298471 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 182.5-25 chr21 32132899 32133152 + 1.33333 NA Intergenic (TTTCT)n|Simple_repeat|Simple_repeat -46730 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 328-9 chr4 90065066 90065486 + 1.33333 NA Intergenic Intergenic -62257 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 288.666-3 chr9 25494294 25494582 + 1.33333 NA Intergenic Intergenic 184420 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 185.667-5 chr10 67469222 67469525 + 1.33333 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -65963 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 280.666-2 chr10 18345121 18345455 + 1.33333 NA intron (NM_201590, intron 1 of 12) L1ME4c|LINE|L1 4579 NM_201590 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 170.167-38 chr22 34736197 34736425 + 1.33333 NA Intergenic MLT1E2|LTR|ERVL-MaLR 261605 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 338.833-3 chr6 64523971 64524286 + 1.33333 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 717292 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 153.333-19 chr14 67503580 67503709 + 1.33333 NA intron (NM_001348549, intron 1 of 3) MIR|SINE|MIR 11571 NM_001348544 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 168.5-24 chr18 46230339 46230596 + 1.33333 NA intron (NM_001008239, intron 2 of 3) intron (NM_001008239, intron 2 of 3) 56433 NM_145055 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|Ark2N|RNF111L1 chromosome 18 open reading frame 25 protein-coding 362.833-3 chr7 7986463 7986913 + 1.33333 NA intron (NM_138426, intron 1 of 7) intron (NM_138426, intron 1 of 7) 17892 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 197.333-60 chr8 67037868 67038055 + 1.33333 NA Intergenic Intergenic -9407 NM_001364910 286187 Hs.583933 NM_001013626 ENSG00000178125 PPP1R42 LRRC67|TLLR|TLRR|dtr protein phosphatase 1 regulatory subunit 42 protein-coding 276.333-21 chr7 67371205 67371619 + 1.33333 NA Intergenic AluJr|SINE|Alu 35436 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 295.333-16 chr6 70021090 70021476 + 1.33333 NA intron (NM_001858, intron 11 of 50) L3|LINE|CR1 154727 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 180.167-44 chr5 6016247 6016410 + 1.33333 NA Intergenic Intergenic 320964 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 312.666-2 chr2 182708391 182708717 + 1.33333 NA Intergenic THE1D|LTR|ERVL-MaLR -7703 NR_073367 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 237.999 chr2 99443419 99443664 + 1.33333 NA intron (NR_135652, intron 4 of 21) intron (NR_135652, intron 4 of 21) 46476 NM_016316 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 341.333-2 chr3 18641622 18642056 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger -196247 NM_001322872 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 263-4 chr10 61733636 61734015 + 1.33333 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 70864 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 151.333-74 chr5 110236053 110236188 + 1.33333 NA Intergenic L1PA4|LINE|L1 277795 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 350.667-2 chr12 59501335 59501842 + 1.33333 NA Intergenic MER5A|DNA|hAT-Charlie -94441 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 178-34 chr3 141325187 141325416 + 1.33333 NA intron (NM_001080412, intron 1 of 7) intron (NM_001080412, intron 1 of 7) 1115 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 236.833 chr1 234257655 234257885 + 1.33333 NA intron (NM_173508, intron 3 of 7) L3|LINE|CR1 43559 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 354.666-2 chr6 125711330 125711933 + 1.33333 NA intron (NR_038906, intron 3 of 3) L1MEc|LINE|L1 37278 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 240.833-20 chr4 61763762 61764157 + 1.33333 NA intron (NM_001371343, intron 8 of 23) MER31-int|LTR|ERV1 397806 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 187.166-2 chr17 56312346 56312515 + 1.33333 NA intron (NM_001370326, intron 3 of 20) intron (NM_001370326, intron 3 of 20) 158955 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 172.166 chr14 88454011 88454187 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR 68442 NM_018418 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 327.167-2 chr11 113905811 113906305 + 1.33333 NA intron (NM_006028, intron 1 of 8) intron (NM_006028, intron 1 of 8) 1262 NM_006028 9177 Hs.241377 NM_006028 ENSG00000149305 HTR3B 5-HT3B 5-hydroxytryptamine receptor 3B protein-coding 247.167-10 chr2 101819694 101820109 + 1.33333 NA intron (NM_145686, intron 3 of 30) intron (NM_145686, intron 3 of 30) 122194 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 145-87 chr8 28836878 28837000 + 1.33333 NA intron (NR_026826, intron 3 of 14) intron (NR_026826, intron 3 of 14) 52976 NM_001172562 55756 Hs.162397 NM_018250 ENSG00000104299 INTS9 CPSF2L|INT9|RC74 integrator complex subunit 9 protein-coding 214.333-14 chr13 44919587 44919844 + 1.33333 NA Intergenic Intergenic 69756 NM_012345 26747 Hs.525006 NM_012345 ENSG00000083635 NUFIP1 NUFIP|bA540M5.1 nuclear FMR1 interacting protein 1 protein-coding 148.666 chr1 207143599 207143748 + 1.33333 NA intron (NM_000715, intron 10 of 11) MIR|SINE|MIR 39440 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 281.999-2 chr4 160760971 160761205 + 1.33333 NA Intergenic L4_B_Mam|LINE|RTE-X -983304 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 157.5-39 chr21 35309540 35309699 + 1.33333 NA Intergenic MIRb|SINE|MIR -260321 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 476.833-3 chr8 120951042 120951820 + 1.33333 NA Intergenic Intergenic -139385 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 188.667-53 chr6 11990758 11990991 + 1.33333 NA intron (NR_125853, intron 2 of 2) intron (NR_125853, intron 2 of 2) 10370 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 205.333-58 chr7 85703562 85703850 + 1.33333 NA Intergenic Intergenic 282584 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 512.166 chr4 35298327 35298786 + 1.33333 NA Intergenic Intergenic 945383 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 447-2 chr4 60404785 60405380 + 1.33333 NA Intergenic Intergenic -517537 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 208-29 chr4 53151271 53151757 + 1.33333 NA intron (NM_152540, intron 4 of 8) intron (NM_152540, intron 4 of 8) 214547 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 266.667-2 chr1 190457098 190457388 + 1.33333 NA intron (NM_199051, intron 1 of 7) AluSx|SINE|Alu 18767 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 251.833-5 chr2 51750348 51750581 + 1.33333 NA intron (NR_135237, intron 5 of 10) L1MEd|LINE|L1 -620184 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 229.833-15 chr4 88957161 88957545 + 1.33333 NA intron (NM_014883, intron 4 of 23) MSTB|LTR|ERVL-MaLR 99832 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 206.666-6 chr5 116896015 116896203 + 1.33333 NA Intergenic MER34A|LTR|ERV1 -133900 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 372.333-2 chr7 80591666 80592004 + 1.33333 NA Intergenic Intergenic -10372 NM_001371075 117-13 chr10 33351144 33351326 + 1.33333 NA Intergenic Intergenic -16330 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 171.667-25 chr14 69806114 69806389 + 1.33333 NA Intergenic L1M7|LINE|L1 -5509 NR_149012 100506358 NR_149012 LOC100506358 - uncharacterized LOC100506358 ncRNA 231.833-9 chr20 13326488 13326786 + 1.33333 NA Intergenic L1ME1|LINE|L1 -86950 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 244.333-19 chr4 8647109 8647344 + 1.33333 NA Intergenic Intergenic 54461 NM_001014447 8532 Hs.61995 NM_003652 ENSG00000109625 CPZ - carboxypeptidase Z protein-coding 313.333-2 chr20 20646783 20647160 + 1.33333 NA intron (NM_020343, intron 4 of 39) intron (NM_020343, intron 4 of 39) 65673 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 215-6 chr10 41827706 41828043 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr 540171 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 290-8 chr5 38202402 38202812 + 1.33333 NA Intergenic Intergenic 54127 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 271.167 chr1 78727671 78727887 + 1.33333 NA Intergenic Intergenic 77948 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 233.666-9 chr8 116799216 116799406 + 1.33333 NA Intergenic L1MEc|LINE|L1 32787 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23 small subunit processome component protein-coding 299.167-7 chr5 6352408 6353056 + 1.33333 NA Intergenic L1ME3A|LINE|L1 -15440 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 350.999-2 chr3 174808525 174808864 + 1.33333 NA Intergenic Intergenic -50640 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 322-4 chr14 36499618 36499968 + 1.33333 NA intron (NR_161365, intron 1 of 4) intron (NR_161365, intron 1 of 4) 13742 NR_161362 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 264-3 chr11 10672621 10672858 + 1.33333 NA intron (NM_130385, intron 1 of 20) L1MB7|LINE|L1 -20438 NM_001098579 10335 Hs.501898 NM_130385 ENSG00000072952 MRVI1 IRAG|JAW1L murine retrovirus integration site 1 homolog protein-coding 246.667-26 chr8 92456513 92456874 + 1.33333 NA Intergenic Intergenic 198801 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 395.166 chr1 75115741 75116075 + 1.33333 NA Intergenic Intergenic -12526 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 187.333-11 chr10 86318521 86318722 + 1.33333 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) 48174 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 477.833 chr2 104874820 104875454 + 1.33333 NA Intergenic L1MB3|LINE|L1 -2542 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 260.167-14 chr8 108664273 108664628 + 1.33333 NA intron (NR_136411, intron 1 of 3) L1PREC2|LINE|L1 123144 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 267.5-17 chr9 110669040 110669424 + 1.33333 NA intron (NM_001166281, intron 1 of 11) intron (NM_001166281, intron 1 of 11) 441 NM_001166281 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 255.666 chr11 21225564 21225795 + 1.33333 NA intron (NM_201551, intron 13 of 18) intron (NM_201551, intron 13 of 18) 556093 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 191.333-15 chr19 31943362 31943573 + 1.33333 NA Intergenic Intergenic -82395 NR_110674 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 351.833 chr4 188131920 188132201 + 1.33333 NA Intergenic L1MB1|LINE|L1 -7381 NM_178556 339976 Hs.348618 NM_178556 ENSG00000184108 TRIML1 RNF209 tripartite motif family like 1 protein-coding 145-5 chr1 100272860 100273001 + 1.33333 NA intron (NM_003729, intron 4 of 10) L1ME4a|LINE|L1 -6756 NR_110434 100506007 Hs.192268 NR_110434 RTCA-AS1 - RTCA antisense RNA 1 ncRNA 278.667-7 chr15 93816380 93816707 + 1.33333 NA Intergenic L1PREC2|LINE|L1 -40017 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 208-6 chr11 60542469 60542731 + 1.33333 NA 3' UTR (NM_001012417, exon 7 of 7) 3' UTR (NM_001012417, exon 7 of 7) 27208 NM_001278320 503497 Hs.523704 NM_001012417 ENSG00000204979 MS4A13 - membrane spanning 4-domains A13 protein-coding 210.833-12 chr17 61602677 61602977 + 1.33333 NA Intergenic L2b|LINE|L2 -11608 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 186-6 chr10 25586686 25586838 + 1.33333 NA intron (NM_020752, intron 7 of 10) intron (NM_020752, intron 7 of 10) -64950 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 334.667-6 chr4 68271038 68271515 + 1.33333 NA Intergenic THE1D|LTR|ERVL-MaLR -25582 NM_182502 132724 Hs.407122 NM_182502 ENSG00000185873 TMPRSS11B - transmembrane serine protease 11B protein-coding 150-67 chr5 124446790 124446916 + 1.33333 NA Intergenic Intergenic -8333 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 168-51 chr4 142229117 142229363 + 1.33333 NA intron (NM_001331040, intron 12 of 25) intron (NM_001331040, intron 12 of 25) 592657 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 214-15 chr15 91175573 91175856 + 1.33333 NA intron (NM_001323040, intron 2 of 12) (TA)n|Simple_repeat|Simple_repeat 73918 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 257.333-28 chr9 32339724 32339988 + 1.33333 NA Intergenic L1ME1|LINE|L1 -44747 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 309.999 chr19 28802385 28802754 + 1.33333 NA Intergenic L1PA16|LINE|L1 -74875 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 357.334 chr4 31495340 31495675 + 1.33333 NA Intergenic L2a|LINE|L2 -11037 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 375.333 chr14 20095595 20096012 + 1.33333 NA Intergenic Intergenic -21665 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 159.834-7 chr7 122535293 122535655 + 1.33333 NA intron (NM_001167940, intron 8 of 29) intron (NM_001167940, intron 8 of 29) 163643 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 342.666 chr2 38539713 38540183 + 1.33333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -24208 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 487.334-3 chr6 95788810 95789466 + 1.33333 NA Intergenic Intergenic 211603 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 226 chr12 23563628 23563982 + 1.33333 NA intron (NM_152989, intron 13 of 17) intron (NM_152989, intron 13 of 17) 20781 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 115.333-36 chr15 85536942 85537104 + 1.33333 NA intron (NM_007200, intron 4 of 36) intron (NM_007200, intron 4 of 36) -82927 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 391-3 chr3 84176232 84177017 + 1.33333 NA Intergenic L1PA16|LINE|L1 692951 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 306-7 chr18 65696128 65696551 + 1.33333 NA Intergenic L1M5|LINE|L1 -53913 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 187.333-7 chr10 31402139 31402340 + 1.33333 NA intron (NM_001323646, intron 4 of 11) intron (NM_001323646, intron 4 of 11) -2484 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 298.5-19 chr7 36347127 36347524 + 1.33333 NA intron (NM_001300956, intron 1 of 5) intron (NM_001300956, intron 1 of 5) 19915 NM_001300956 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 230-17 chr2 230066427 230066628 + 1.33333 NA intron (NM_152527, intron 1 of 4) intron (NM_152527, intron 1 of 4) 2397 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 288.666 chr12 130830587 130830926 + 1.33333 NA intron (NM_001351051, intron 1 of 10) intron (NM_001351051, intron 1 of 10) 8494 NM_001351052 2054 Hs.437585 NM_001980 ENSG00000111450 STX2 EPIM|EPM|STX2A|STX2B|STX2C syntaxin 2 protein-coding 259.333-21 chr7 24592721 24592949 + 1.33333 NA intron (NM_001303037, intron 1 of 11) Tigger1|DNA|TcMar-Tigger 19383 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 273.167-14 chr5 103660984 103661402 + 1.33333 NA Intergenic Intergenic -98404 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 347-7 chr3 188473531 188474064 + 1.33333 NA intron (NM_001167672, intron 2 of 9) intron (NM_001167672, intron 2 of 9) 94869 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 308-5 chr2 190379768 190380426 + 1.33333 NA Intergenic Intergenic -28258 NM_017694 54842 Hs.418581 NM_017694 ENSG00000151690 MFSD6 MMR2|hMMR2 major facilitator superfamily domain containing 6 protein-coding 272.5-15 chr3 43388549 43388901 + 1.33333 NA intron (NM_001204831, intron 11 of 12) intron (NM_001204831, intron 11 of 12) -36763 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 293.666-5 chr20 10867283 10867659 + 1.33333 NA Intergenic Intergenic 41801 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 254.5-3 chr15 60654703 60654988 + 1.33333 NA intron (NM_134261, intron 2 of 10) MLT1D|LTR|ERVL-MaLR -26724 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 234.833-17 chr5 11411351 11411751 + 1.33333 NA non-coding (NR_109988, exon 5 of 22) non-coding (NR_109988, exon 5 of 22) 177366 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 128.666 chr2 116389387 116389525 + 1.33333 NA Intergenic L2|LINE|L2 1045641 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 234.666-3 chr6 62563244 62563589 + 1.33333 NA Intergenic AluSx4|SINE|Alu -277189 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 135.833-2 chr10 44086280 44086468 + 1.33333 NA Intergenic Intergenic 173972 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 326.666-3 chr4 42800032 42800417 + 1.33333 NA Intergenic MIR|SINE|MIR -93042 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 194.333-47 chr9 75444021 75444287 + 1.33333 NA Intergenic L1PREC2|LINE|L1 355640 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 342-4 chr14 77463652 77464088 + 1.33333 NA intron (NM_012111, intron 4 of 8) intron (NM_012111, intron 4 of 8) 5777 NM_012111 10598 Hs.204041 NM_012111 ENSG00000100591 AHSA1 AHA1|C14orf3|hAha1|p38 activator of HSP90 ATPase activity 1 protein-coding 184.666-6 chr6 136244926 136245102 + 1.33333 NA intron (NM_001099286, intron 2 of 7) intron (NM_001099286, intron 2 of 7) 5297 NM_001099286 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 392.333-2 chr19 56514738 56515128 + 1.33333 NA intron (NM_001321768, intron 2 of 3) L1MC3|LINE|L1 7078 NM_020813 57573 Hs.230188 NM_020813 ENSG00000196263 ZNF471 ERP1|Z1971 zinc finger protein 471 protein-coding 321.5-5 chr21 29826677 29827102 + 1.33333 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 78714 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 272.333-7 chr14 29667668 29667975 + 1.33333 NA intron (NM_001330069, intron 2 of 18) intron (NM_001330069, intron 2 of 18) 259275 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 281.666 chr14 73972480 73972736 + 1.33333 NA intron (NM_001249, intron 13 of 15) L1MA10|LINE|L1 22306 NM_182476 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 279.666-4 chr21 26925661 26926008 + 1.33333 NA intron (NM_007038, intron 7 of 7) intron (NM_007038, intron 7 of 7) -28127 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 156.5-83 chr8 42347980 42348240 + 1.33333 NA intron (NM_002690, intron 3 of 13) L1ME4b|LINE|L1 9616 NM_002690 5423 Hs.654484 NM_002690 ENSG00000070501 POLB - DNA polymerase beta protein-coding 406.333 chr22 30738876 30739542 + 1.33333 NA intron (NM_030758, intron 1 of 13) intron (NM_030758, intron 1 of 13) 7652 NR_036171 100422912 NR_036171 ENSG00000264661 MIR3200 mir-3200 microRNA 3200 ncRNA 220.5-32 chr6 139240125 139240432 + 1.33333 NA 3' UTR (NM_153235, exon 10 of 10) 3' UTR (NM_153235, exon 10 of 10) 51720 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 273.667-18 chr6 53228047 53228549 + 1.33333 NA Intergenic Intergenic -48695 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 240-21 chr2 224937960 224938175 + 1.33333 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) 8982 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 403 chr1 175875655 175876193 + 1.33333 NA Intergenic Intergenic -1419 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 299-14 chr9 77463247 77463681 + 1.33333 NA intron (NR_121184, intron 2 of 4) intron (NR_121184, intron 2 of 4) 15815 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 363.833-4 chr3 12096300 12096730 + 1.33333 NA intron (NM_133625, intron 1 of 12) intron (NM_133625, intron 1 of 12) 62397 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 318.333-5 chr6 168286451 168286833 + 1.33333 NA Intergenic Intergenic 33135 NM_001286351 168002 Hs.673059 NM_214462 ENSG00000164488 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled binding antagonist of beta catenin 2 protein-coding 146-36 chr2 107761556 107761738 + 1.33333 NA intron (NR_126370, intron 2 of 4) MIR|SINE|MIR 7535 NR_126369 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 163.167-39 chr6 90921641 90921839 + 1.33333 NA Intergenic L1MEd|LINE|L1 -334668 NM_145331 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 348.166-4 chr8 102753045 102753529 + 1.33333 NA Intergenic Intergenic -53535 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 328.833-2 chr18 2547002 2547406 + 1.33333 NA intron (NM_022840, intron 6 of 8) intron (NM_022840, intron 6 of 8) 24301 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 309.333 chr1 183724446 183724757 + 1.33333 NA intron (NM_001297669, intron 2 of 18) L1M1|LINE|L1 -71285 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding 207-18 chr17 60344729 60345052 + 1.33333 NA intron (NM_032582, intron 2 of 33) FLAM_C|SINE|Alu 47243 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 200.333-17 chr2 26263347 26263663 + 1.33333 NA intron (NM_001281512, intron 4 of 14) intron (NM_001281512, intron 4 of 14) 18566 NM_001281513 3032 Hs.515848 NM_000183 ENSG00000138029 HADHB ECHB|MSTP029|MTPB|TP-BETA hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta protein-coding 248 chr11 113968902 113969135 + 1.33333 NA Intergenic Intergenic -6057 NR_046363 3359 Hs.413899 NM_000869 ENSG00000166736 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine receptor 3A protein-coding 146.5-40 chr2 8275636 8275808 + 1.33333 NA intron (NR_152741, intron 8 of 9) L1MEg|LINE|L1 52697 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 288.166 chr14 49584607 49584982 + 1.33333 NA intron (NM_001032, intron 2 of 2) intron (NM_001032, intron 2 of 2) 1586 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 398-4 chr3 73532246 73532702 + 1.33333 NA intron (NR_121660, intron 1 of 1) MIRb|SINE|MIR 11152 NR_121660 101927296 Hs.662049 NR_121660 LOC101927296 - uncharacterized LOC101927296 ncRNA 279.667-8 chr18 79548239 79548531 + 1.33333 NA Intergenic CpG -30897 NR_148949 284240 Hs.448912 NR_148949 LOC284240 - uncharacterized LOC284240 ncRNA 329.5-13 chr3 110100487 110100756 + 1.33333 NA Intergenic Intergenic 497793 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 182.167-10 chr11 93191594 93191863 + 1.33333 NA intron (NM_152313, intron 1 of 10) intron (NM_152313, intron 1 of 10) 5698 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 221.666-5 chr7 12653342 12653634 + 1.33333 NA non-coding (NR_156701, exon 15 of 15) non-coding (NR_156701, exon 15 of 15) -33339 NM_212460 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 181.333-44 chr5 3201585 3201972 + 1.33333 NA Intergenic L1MA5|LINE|L1 23943 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 171-64 chr8 84908987 84909186 + 1.33333 NA intron (NM_001287244, intron 7 of 7) intron (NM_001287244, intron 7 of 7) -198152 NM_001349637 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 440.666 chr1 233851290 233852045 + 1.33333 NA Intergenic Intergenic -53009 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 305.333-3 chr10 50213457 50213829 + 1.33333 NA intron (NM_001143974, intron 8 of 18) intron (NM_001143974, intron 8 of 18) 34967 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 366.167-2 chr10 86359770 86360269 + 1.33333 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) 6776 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 220.334 chr1 210425978 210426159 + 1.33333 NA intron (NM_001122834, intron 7 of 11) L1PA12|LINE|L1 96702 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 200.334-8 chr8 136389221 136389562 + 1.33333 NA Intergenic Intergenic -141407 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 170.666-2 chr12 22816131 22816371 + 1.33333 NA Intergenic Intergenic 191080 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 432.999 chr14 27555358 27555798 + 1.33333 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -57010 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 225.833-20 chr8 92657330 92657614 + 1.33333 NA Intergenic Intergenic -1978 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 345.833-2 chr8 88987000 88987382 + 1.33333 NA Intergenic Intergenic -659708 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 209.833-24 chr7 51211507 51211682 + 1.33333 NA intron (NM_015198, intron 2 of 12) intron (NM_015198, intron 2 of 12) 105215 NM_001287438 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 327.333-11 chr4 126247471 126247770 + 1.33333 NA Intergenic L1M2|LINE|L1 740361 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 237.5-8 chr14 24915201 24915450 + 1.33333 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 133675 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 279.666-3 chr2 127499694 127500042 + 1.33333 NA intron (NM_017969, intron 5 of 13) Tigger3d|DNA|TcMar-Tigger 26621 NM_017969 55677 Hs.469879 NM_017969 ENSG00000163166 IWS1 - interacts with SUPT6H, CTD assembly factor 1 protein-coding 128.833-86 chr8 129929434 129929568 + 1.33333 NA intron (NM_001353256, intron 2 of 13) L1MB7|LINE|L1 10310 NM_001353313 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 251.333-12 chr2 46812785 46813059 + 1.33333 NA Intergenic Intergenic -3746 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 158-28 chr20 60072682 60072926 + 1.33333 NA non-coding (NR_161291, exon 4 of 4) non-coding (NR_161291, exon 4 of 4) -14882 NR_109916 729296 Hs.534781 NR_109916 LOC729296 - uncharacterized LOC729296 ncRNA 182.833-30 chr20 44120700 44120998 + 1.33333 NA intron (NM_020433, intron 2 of 5) MER30|DNA|hAT-Charlie 66339 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 124-13 chr10 43948006 43948125 + 1.33333 NA intron (NR_033846, intron 5 of 7) L1MB8|LINE|L1 35663 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 309.333-5 chr2 163624383 163624681 + 1.33333 NA intron (NM_001321825, intron 1 of 1) intron (NM_001321825, intron 1 of 1) 111476 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 129.333-113 chrX 84493091 84493216 + 1.33333 NA intron (NM_001177478, intron 1 of 9) intron (NM_001177478, intron 1 of 9) 9300 NM_144657 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 206-32 chr6 48895367 48895590 + 1.33333 NA Intergenic Intergenic 567775 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 126.167-45 chr2 185101370 185101520 + 1.33333 NA Intergenic MIR3|SINE|MIR 65627 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 148-10 chr1 198757535 198757753 + 1.33333 NA TTS (NM_080921) TTS (NM_080921) 101338 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 143.667-105 chr8 121210254 121210437 + 1.33333 NA Intergenic Intergenic -398299 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 213.333-10 chr12 19759851 19760056 + 1.33333 NA Intergenic AluJr|SINE|Alu -254732 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 358-3 chr12 8581423 8581903 + 1.33333 NA Intergenic Intergenic 31196 NM_020661 57379 Hs.149342 NM_020661 ENSG00000111732 AICDA AID|ARP2|CDA2|HEL-S-284|HIGM2 activation induced cytidine deaminase protein-coding 244.833-2 chr10 118027534 118027895 + 1.33333 NA intron (NM_014904, intron 3 of 4) intron (NM_014904, intron 3 of 4) -19107 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 294-10 chr5 29516223 29516658 + 1.33333 NA Intergenic Intergenic -120464 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 240-26 chr3 98934596 98934995 + 1.33333 NA Intergenic L1PA16|LINE|L1 -33100 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 348-10 chr8 120017919 120018252 + 1.33333 NA intron (NM_022783, intron 8 of 8) intron (NM_022783, intron 8 of 8) -107017 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 289.666-2 chr15 56863256 56863843 + 1.33333 NA Intergenic L1MD|LINE|L1 -54541 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 141.667-80 chr4 76122987 76123214 + 1.33333 NA intron (NR_103781, intron 7 of 9) L1MB8|LINE|L1 25297 NM_017426 53371 Hs.430435 NM_017426 ENSG00000138750 NUP54 - nucleoporin 54 protein-coding 127.167-97 chr9 76714710 76714887 + 1.33333 NA intron (NM_001308048, intron 6 of 17) L2a|LINE|L2 -22383 NM_001308050 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 240.333-19 chr4 35411457 35411727 + 1.33333 NA Intergenic L1ME1|LINE|L1 832347 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 251.333-10 chr19 5429823 5430157 + 1.33333 NA Intergenic Intergenic -25427 NM_181710 148066 Hs.126496 NM_181710 ENSG00000105428 ZNRF4 RNF204|SPERIZIN|Ssrzf1|spzn zinc and ring finger 4 protein-coding 236.667-31 chr5 26507589 26507867 + 1.33333 NA Intergenic Intergenic 530858 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 277-11 chr3 166836728 166837003 + 1.33333 NA Intergenic L1ME2|LINE|L1 -61818 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 329 chr10 81478253 81478607 + 1.33333 NA Intergenic L1MD2|LINE|L1 -396764 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 180-46 chr6 12006379 12006528 + 1.33333 NA Intergenic Intergenic -5209 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 196.333-55 chr8 113804017 113804242 + 1.33333 NA Intergenic L1MB1|LINE|L1 -367190 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 227.166-2 chr14 84220732 84220969 + 1.33333 NA Intergenic LTR16C|LTR|ERVL -1051082 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 255-14 chr22 35097541 35097827 + 1.33333 NA Intergenic Intergenic 31526 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 158.333-50 chr22 46305139 46305306 + 1.33333 NA intron (NM_016426, intron 2 of 11) L1M5|LINE|L1 8352 NM_016426 51512 Hs.386189 NM_016426 ENSG00000075218 GTSE1 B99 G2 and S-phase expressed 1 protein-coding 201.333-38 chr7 79274712 79275004 + 1.33333 NA intron (NM_001301128, intron 1 of 20) Tigger1|DNA|TcMar-Tigger -178099 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 242.333-25 chr8 103425835 103426047 + 1.33333 NA intron (NM_015420, intron 3 of 10) intron (NM_015420, intron 3 of 10) 10555 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 255.833-6 chr18 73575438 73575696 + 1.33333 NA Intergenic L1MA8|LINE|L1 250626 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 117-114 chr7 87834345 87834514 + 1.33333 NA 3' UTR (NM_018843, exon 12 of 12) 3' UTR (NM_018843, exon 12 of 12) 41931 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 356.166-2 chr5 35403686 35404011 + 1.33333 NA Intergenic L1ME3B|LINE|L1 -173361 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 216-5 chr10 116264645 116264885 + 1.33333 NA intron (NM_005264, intron 4 of 10) intron (NM_005264, intron 4 of 10) 7460 NM_145793 2674 Hs.388347 NM_005264 ENSG00000151892 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 165-13 chr12 40009263 40009406 + 1.33333 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 96747 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 168.333-54 chr8 83407341 83407614 + 1.33333 NA intron (NR_122034, intron 1 of 1) MER92-int|LTR|ERV1 3719 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 138.167-32 chr17 67100216 67100423 + 1.33333 NA intron (NM_001330447, intron 31 of 32) intron (NM_001330447, intron 31 of 32) 55765 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 237.333-3 chr10 66996838 66997043 + 1.33333 NA intron (NR_111911, intron 1 of 6) intron (NR_111911, intron 1 of 6) 15213 NR_111911 101928961 Hs.687014 NR_111911 LOC101928961 - uncharacterized LOC101928961 ncRNA 224-31 chr5 63828773 63829030 + 1.33333 NA Intergenic THE1C|LTR|ERVL-MaLR 133391 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 144.333-75 chr6 61527808 61528066 + 1.33333 NA Intergenic MER34B|LTR|ERV1 -46193 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 185.666-6 chr5 61999595 61999856 + 1.33333 NA Intergenic Intergenic -264027 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 227-23 chr6 55448792 55449213 + 1.33333 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 121533 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 211.667-33 chr5 149493808 149494043 + 1.33333 NA 3' UTR (NM_001892, exon 10 of 10) 3' UTR (NM_001892, exon 10 of 10) 56440 NM_001271742 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 205.667-3 chr1 209144208 209144516 + 1.33333 NA Intergenic Intergenic 171908 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 187.166 chr10 70632773 70632993 + 1.33333 NA Intergenic Tigger2|DNA|TcMar-Tigger -30095 NM_005041 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 126.333-89 chr5 113848524 113848674 + 1.33333 NA Intergenic Intergenic 334905 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 181.333-20 chr16 74163446 74163601 + 1.33333 NA Intergenic L1MEc|LINE|L1 51998 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 123.333-13 chr10 6917119 6917227 + 1.33333 NA Intergenic Intergenic 137575 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 354.001 chr3 102167341 102167637 + 1.33333 NA Intergenic L1MEf|LINE|L1 3784 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 249.333-14 chr2 145823635 145823951 + 1.33333 NA Intergenic MER104|DNA|TcMar-Tc2 -763264 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 137-23 chr12 51936077 51936269 + 1.33333 NA Intergenic MLT1O|LTR|ERVL-MaLR -15526 NM_004302 91 Hs.438918 NM_004302 ENSG00000135503 ACVR1B ACTRIB|ACVRLK4|ALK4|SKR2 activin A receptor type 1B protein-coding 159.333-55 chr4 63666217 63666404 + 1.33333 NA Intergenic L1PREC2|LINE|L1 743140 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 295.666 chr17 61150480 61150743 + 1.33333 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 217093 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 196.333-30 chr3 181298039 181298312 + 1.33333 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 66438 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 221.333-5 chr12 17159434 17159641 + 1.33333 NA Intergenic Intergenic 170790 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 242.5-15 chr5 82116140 82116503 + 1.33333 NA intron (NM_031482, intron 3 of 7) intron (NM_031482, intron 3 of 7) 144298 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 214.666-4 chr3 115471199 115471500 + 1.33333 NA Intergenic MER58D|DNA|hAT-Charlie -152161 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 434.667-3 chr7 88386936 88387625 + 1.33333 NA Intergenic Intergenic -80386 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 164.667-13 chr11 13090241 13090429 + 1.33333 NA Intergenic LTR33|LTR|ERVL 81019 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 392.334-3 chr5 129791040 129791711 + 1.33333 NA Intergenic L1MEf|LINE|L1 43281 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 116.167-86 chr9 102478713 102478885 + 1.33333 NA Intergenic Intergenic -40838 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 255-24 chr9 19793432 19793710 + 1.33333 NA Intergenic Intergenic -6552 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 136.167-50 chr3 36797157 36797429 + 1.33333 NA Intergenic Charlie2b|DNA|hAT-Charlie 25207 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 242.667-15 chr2 10643314 10643626 + 1.33333 NA intron (NR_048552, intron 12 of 19) intron (NR_048552, intron 12 of 19) 46505 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 291.5-8 chr18 61326550 61327145 + 1.33333 NA Intergenic Intergenic -6583 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 192-39 chr5 90837007 90837183 + 1.33333 NA intron (NR_003149, intron 77 of 89) intron (NR_003149, intron 77 of 89) 278298 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 270-10 chr3 173514495 173514719 + 1.33333 NA intron (NM_014932, intron 2 of 6) L1MB1|LINE|L1 -69827 NM_001365928 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 183.833-28 chr3 31521970 31522196 + 1.33333 NA Intergenic Intergenic -10842 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 170-81 chr8 113839266 113839460 + 1.33333 NA Intergenic Intergenic -402424 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 229.666-3 chr2 119245300 119245558 + 1.33333 NA non-coding (NR_046721, exon 2 of 2) non-coding (NR_046721, exon 2 of 2) 3642 NR_046721 100874111 Hs.704682 NR_046721 ENSG00000229867 STEAP3-AS1 - STEAP3 antisense RNA 1 ncRNA 155.833-6 chr10 36150398 36150684 + 1.33333 NA Intergenic Intergenic 372239 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 267.833-9 chr2 97664542 97664958 + 1.33333 NA promoter-TSS (NM_005735) promoter-TSS (NM_005735) -706 NM_005735 10120 Hs.98791 NM_005735 ENSG00000115073 ACTR1B ARP1B|CTRN2|PC3 actin related protein 1B protein-coding 121-87 chr8 49116983 49117139 + 1.33333 NA Intergenic L1M5|LINE|L1 44717 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 135.667-28 chr12 84900309 84900537 + 1.33333 NA intron (NM_182767, intron 1 of 11) L1M5|LINE|L1 12376 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 250-3 chr10 79997613 79997975 + 1.33333 NA Intergenic Intergenic -48689 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 158-30 chr3 4649965 4650186 + 1.33333 NA intron (NM_001168272, intron 10 of 60) L1MB7|LINE|L1 101515 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 144.333-23 chr12 41072399 41072633 + 1.33333 NA TTS (NM_175038) TTS (NM_175038) -115804 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 323.001 chr5 30571447 30571746 + 1.33333 NA Intergenic L1M5|LINE|L1 -622090 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 263.333-22 chr8 80963343 80963563 + 1.33333 NA Intergenic Intergenic -88672 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 291.833-4 chr16 58830836 58831103 + 1.33333 NA Intergenic MIRb|SINE|MIR -96653 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 164-61 chr6 73426586 73426833 + 1.33333 NA intron (NM_138441, intron 4 of 4) intron (NM_138441, intron 4 of 4) 25588 NM_138441 115004 Hs.658405 NM_138441 ENSG00000164430 CGAS C6orf150|MB21D1|h-cGAS cyclic GMP-AMP synthase protein-coding 163.667-62 chr5 76039054 76039491 + 1.33333 NA Intergenic Intergenic -44111 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 540.833 chr11 39956937 39957642 + 1.33333 NA Intergenic Intergenic 335841 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 240.833-11 chr17 74689929 74690160 + 1.33333 NA intron (NM_175738, intron 1 of 8) AluJo|SINE|Alu 18913 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 285.333-15 chr6 69182751 69183085 + 1.33333 NA intron (NM_001704, intron 17 of 31) MER63A|DNA|hAT-Blackjack 547636 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 338-7 chr2 152566243 152566733 + 1.33333 NA intron (NM_052905, intron 6 of 25) MIRb|SINE|MIR 150973 NM_001365596 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 207.833-28 chr5 44932154 44932486 + 1.33333 NA Intergenic L1MA6|LINE|L1 123373 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 227.666-5 chr6 34866372 34866587 + 1.33333 NA intron (NM_017754, intron 15 of 20) L1MC5|LINE|L1 21563 NM_005643 6882 Hs.112444 NM_005643 ENSG00000064995 TAF11 MGC:15243|PRO2134|TAF2I|TAFII28 TATA-box binding protein associated factor 11 protein-coding 177.5-53 chr3 88356701 88356868 + 1.33333 NA intron (NM_001368167, intron 2 of 2) L1MA4|LINE|L1 18328 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 166-43 chr4 45437368 45437558 + 1.33333 NA Intergenic L1PA16|LINE|L1 686591 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 163.333-44 chr2 123171871 123172097 + 1.33333 NA Intergenic MER2|DNA|TcMar-Tigger -98503 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 170.667-39 chr3 84535495 84535710 + 1.33333 NA Intergenic Intergenic 333973 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 172.5-49 chr5 39250994 39251206 + 1.33333 NA intron (NM_001243093, intron 1 of 18) intron (NM_001243093, intron 1 of 18) 19549 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 197-46 chr7 37829578 37829773 + 1.33333 NA Intergenic MLT1J|LTR|ERVL-MaLR -18922 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 174-34 chr21 29445404 29445581 + 1.33333 NA Intergenic L1M5|LINE|L1 -50555 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 195.833-22 chr4 122221229 122221468 + 1.33333 NA intron (NM_015312, intron 20 of 83) intron (NM_015312, intron 20 of 83) 50745 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 340.333-13 chr5 135345658 135346073 + 1.33333 NA intron (NM_138609, intron 7 of 8) intron (NM_138609, intron 7 of 8) 53373 NM_138610 9555 Hs.420272 NM_004893 ENSG00000113648 H2AFY H2A.y|H2A/y|H2AF12M|MACROH2A1.1|mH2A1|macroH2A1.2 H2A histone family member Y protein-coding 249.334 chr1 86425156 86425626 + 1.33333 NA exon (NM_006536, exon 2 of 14) exon (NM_006536, exon 2 of 14) 1220 NM_006536 9635 Hs.241551 NM_006536 ENSG00000137975 CLCA2 CACC|CACC3|CLCRG2|CaCC-3 chloride channel accessory 2 protein-coding 330-9 chr7 40260554 40261023 + 1.33333 NA intron (NM_001193312, intron 7 of 12) AluSx|SINE|Alu 125812 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 172.666-5 chr4 48199939 48200122 + 1.33333 NA intron (NM_003215, intron 2 of 17) L2b|LINE|L2 -65780 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 168.833-2 chr1 68540956 68541176 + 1.33333 NA Intergenic Arthur1B|DNA|hAT-Tip100 -43984 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 193-3 chr1 84747224 84747675 + 1.33333 NA Intergenic Intergenic -56981 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 255.333-21 chr5 84681947 84682217 + 1.33333 NA Intergenic Intergenic -297202 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 224.333-3 chr11 110087054 110087270 + 1.33333 NA Intergenic Intergenic -6230 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 350.666-3 chr8 121181118 121181449 + 1.33333 NA Intergenic Intergenic -369237 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 233.333 chr1 225274711 225274954 + 1.33333 NA intron (NM_001367479, intron 52 of 85) intron (NM_001367479, intron 52 of 85) 153206 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 160.333-60 chr8 11944401 11944533 + 1.33333 NA Intergenic Intergenic 30132 NM_001033018 613210 Hs.558285 NM_001033018 ENSG00000205884 DEFB136 DEFB137 defensin beta 136 protein-coding 241.5-29 chr8 138526110 138526606 + 1.33333 NA Intergenic LTR37-int|LTR|ERV1 -28628 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 260.833-17 chr9 28210057 28210341 + 1.33333 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 509106 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 156.667-56 chr2 197287797 197288176 + 1.33333 NA intron (NR_046837, intron 5 of 5) AluSz|SINE|Alu 14533 NR_046837 101927547 Hs.687027 NR_046837 ENSG00000236977 ANKRD44-IT1 - ANKRD44 intronic transcript 1 ncRNA 217-28 chr5 27533997 27534544 + 1.33333 NA Intergenic Intergenic 61978 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 116-99 chr9 30521898 30522091 + 1.33333 NA Intergenic Intergenic -113540 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 168.666-2 chr22 27677005 27677200 + 1.33333 NA Intergenic L1ME3|LINE|L1 124654 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 262.5 chr1 84566783 84567049 + 1.33333 NA intron (NM_004388, intron 3 of 6) AluSx|SINE|Alu 7524 NM_004388 1486 Hs.513557 NM_004388 ENSG00000117151 CTBS CTB chitobiase protein-coding 241.333-2 chr1 88641066 88641273 + 1.33333 NA intron (NR_110682, intron 1 of 3) MLT2B4|LTR|ERVL -42975 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 219.333-3 chr10 16956816 16957130 + 1.33333 NA intron (NM_001081, intron 31 of 66) L1MA6|LINE|L1 -139519 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 273.833-9 chr5 15742723 15742976 + 1.33333 NA intron (NM_001278317, intron 2 of 3) THE1C|LTR|ERVL-MaLR -127847 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 292-10 chr3 108966701 108967001 + 1.33333 NA intron (NM_014429, intron 26 of 27) L2c|LINE|L2 -12972 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 356.666-4 chr8 129039023 129039479 + 1.33333 NA Intergenic L1MEf|LINE|L1 -73250 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 141.333-86 chr6 129844133 129844289 + 1.33333 NA intron (NM_001010876, intron 2 of 4) intron (NM_001010876, intron 2 of 4) 17104 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 248.667-20 chr5 55645697 55645999 + 1.33333 NA exon (NM_173514, exon 12 of 16) exon (NM_173514, exon 12 of 16) 47205 NM_001258286 153129 Hs.742101 NM_173514 ENSG00000177058 SLC38A9 URLC11 solute carrier family 38 member 9 protein-coding 180.166 chr11 92382154 92382350 + 1.33333 NA intron (NM_001008781, intron 1 of 24) intron (NM_001008781, intron 1 of 24) 30156 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 144.333-21 chr12 24103798 24103938 + 1.33333 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -108553 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 261.333-28 chr7 113327274 113327685 + 1.33333 NA Intergenic Intergenic -208897 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 251.333-13 chr2 203044700 203045021 + 1.33333 NA intron (NM_001114132, intron 3 of 54) intron (NM_001114132, intron 3 of 54) 29981 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 278.666-4 chr5 109504023 109504439 + 1.33333 NA Intergenic LTR33A_|LTR|ERVL -94257 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 162.333-21 chr15 49656516 49656653 + 1.33333 NA TTS (NM_001144955) TTS (NM_001144955) 35536 NM_001144955 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 300.667 chr1 107666625 107667107 + 1.33333 NA intron (NM_006113, intron 19 of 26) MIR|SINE|MIR 21633 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 129.166 chr14 72403702 72403820 + 1.33333 NA intron (NM_001370288, intron 3 of 16) L3|LINE|CR1 -113059 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 193.5-3 chr1 171746023 171746268 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR -4080 NM_001185127 8674 Hs.6651 NM_003762 ENSG00000117533 VAMP4 VAMP-4|VAMP24 vesicle associated membrane protein 4 protein-coding 350.666-2 chr8 112690108 112690382 + 1.33333 NA intron (NM_001363185, intron 11 of 66) MIR3|SINE|MIR 46752 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 253.833-10 chr4 9827428 9827671 + 1.33333 NA intron (NM_001001290, intron 12 of 12) intron (NM_001001290, intron 12 of 12) 45915 NM_000798 1816 Hs.380681 NM_000798 ENSG00000169676 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 230.667-8 chr15 57924551 57924856 + 1.33333 NA Intergenic MIRb|SINE|MIR 89320 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 213.333-32 chr3 158693793 158694008 + 1.33333 NA Intergenic Intergenic -21252 NM_020169 56925 Hs.478067 NM_020169 ENSG00000079257 LXN ECI|TCI latexin protein-coding 149.5-34 chr2 50311717 50311837 + 1.33333 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 35977 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 232.667-25 chr5 36261006 36261277 + 1.33333 NA intron (NM_001323279, intron 6 of 12) intron (NM_001323279, intron 6 of 12) -18862 NM_153013 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 232.5-23 chr4 32065815 32066063 + 1.33333 NA intron (NR_125936, intron 1 of 2) L1MEg|LINE|L1 -43517 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 146-76 chr9 120297513 120297763 + 1.33333 NA Intergenic MLT1H1|LTR|ERVL-MaLR -52588 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 212.333-39 chr8 89002460 89002799 + 1.33333 NA Intergenic HAL1|LINE|L1 -675146 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 400.166 chr7 13523543 13524149 + 1.33333 NA Intergenic Intergenic 462668 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 305.167-2 chr10 121654197 121654497 + 1.33333 NA Intergenic Intergenic -55889 NM_022970 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 336-9 chr5 147149574 147149897 + 1.33333 NA Intergenic MIRb|SINE|MIR -68215 NM_001271900 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 167.333-55 chr5 65666785 65666988 + 1.33333 NA TTS (NM_001243737) TTS (NM_001243737) 41859 NM_001365343 80006 Hs.591760 NM_024941 ENSG00000113597 TRAPPC13 C5orf44|SHLD3 trafficking protein particle complex 13 protein-coding 236.5 chr1 113172088 113172572 + 1.33333 NA Intergenic L1MA4A|LINE|L1 33923 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 139.666-2 chr12 22682382 22682532 + 1.33333 NA intron (NM_018638, intron 6 of 7) Charlie1a|DNA|hAT-Charlie 57286 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 216.166-3 chr7 84708465 84708668 + 1.33333 NA Intergenic Intergenic 176090 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 260.833 chr1 24438435 24438818 + 1.33333 NA intron (NM_001322862, intron 3 of 12) intron (NM_001322862, intron 3 of 12) 22601 NM_001322857 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 203.666-2 chr8 51457490 51457860 + 1.33333 NA intron (NM_144651, intron 8 of 22) intron (NM_144651, intron 8 of 22) 351770 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 230.333-21 chr4 73397770 73398129 + 1.33333 NA Intergenic Intergenic -6338 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 256.001 chr2 54437950 54438234 + 1.33333 NA Intergenic Intergenic -18235 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 314.667 chr11 74686604 74687135 + 1.33333 NA Intergenic LTR16A2|LTR|ERVL 24498 NM_001304417 25884 Hs.432379 NM_015424 ENSG00000054938 CHRDL2 BNF1|CHL2 chordin like 2 protein-coding 207-19 chr17 77336037 77336317 + 1.33333 NA intron (NM_006640, intron 1 of 10) L1MEf|LINE|L1 16662 NM_006640 10801 Hs.440932 NM_006640 ENSG00000184640 SEPTIN9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1 septin 9 protein-coding 246-4 chr12 95152684 95152992 + 1.33333 NA exon (NM_018351, exon 5 of 21) exon (NM_018351, exon 5 of 21) 64629 NM_018351 55785 Hs.506381 NM_018351 ENSG00000180263 FGD6 ZFYVE24 FYVE, RhoGEF and PH domain containing 6 protein-coding 273.167-2 chr11 23385089 23385536 + 1.33333 NA Intergenic Intergenic 33878 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 207.666-4 chr15 72267583 72267842 + 1.33333 NA intron (NR_136599, intron 2 of 22) intron (NR_136599, intron 2 of 22) 4842 NM_001323528 56965 Hs.270244 NM_020213 ENSG00000137817 PARP6 ARTD17|PARP-6-B1|PARP-6-C|pART17 poly(ADP-ribose) polymerase family member 6 protein-coding 222-28 chr4 157934808 157935208 + 1.33333 NA Intergenic Intergenic -235744 NR_147408 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 164.667-28 chr16 63503394 63503913 + 1.33333 NA Intergenic Intergenic -1467215 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 312.666-4 chr8 115301327 115301727 + 1.33333 NA Intergenic Intergenic 366486 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 169.167-36 chr5 166252397 166252933 + 1.33333 NA Intergenic MIRb|SINE|MIR 673705 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 195.333-9 chr14 68192649 68192907 + 1.33333 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 369186 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 137.5-54 chr22 37117222 37117407 + 1.33333 NA Intergenic Intergenic -7601 NM_001289000 164656 Hs.370885 NM_153609 ENSG00000187045 TMPRSS6 IRIDA transmembrane serine protease 6 protein-coding 264.833-5 chr10 114853122 114853357 + 1.33333 NA intron (NM_001135051, intron 13 of 16) intron (NM_001135051, intron 13 of 16) 31459 NM_020940 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 148.666-2 chr12 66263520 66263681 + 1.33333 NA Intergenic Intergenic 12518 NR_106757 102465249 NR_106757 ENSG00000284011 MIR6502 hsa-mir-6502 microRNA 6502 ncRNA 283.501 chr10 76227424 76227883 + 1.33333 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 444892 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 136.5-13 chr10 65042672 65042783 + 1.33333 NA Intergenic L1MA3|LINE|L1 -118209 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 310-6 chr2 199789852 199790200 + 1.33333 NA intron (NM_001350855, intron 3 of 3) intron (NM_001350855, intron 3 of 3) 61147 NM_001350854 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 264.5-7 chr20 54250753 54251226 + 1.33333 NA Intergenic Intergenic 42902 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 122.667-84 chr5 39648017 39648185 + 1.33333 NA Intergenic Intergenic 127670 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 212.833-2 chr11 34030058 34030305 + 1.33333 NA Intergenic Intergenic -21550 NM_005898 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 264-23 chr8 78967479 78967777 + 1.33333 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 130099 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 248-22 chr7 85271607 85271855 + 1.33333 NA Intergenic MLT1K|LTR|ERVL-MaLR -149391 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 120.666 chr11 73490799 73490938 + 1.33333 NA intron (NM_001286051, intron 1 of 5) L2a|LINE|L2 107244 NM_001286051 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 261.666 chr12 53572304 53572631 + 1.33333 NA intron (NR_073163, intron 2 of 12) L1MCa|LINE|L1 53523 NM_001366562 11016 Hs.12286 NM_006856 ENSG00000170653 ATF7 ATFA activating transcription factor 7 protein-coding 256.166-4 chr8 131536706 131537094 + 1.33333 NA Intergenic L1MB7|LINE|L1 -367193 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 303-5 chr3 111670941 111671445 + 1.33333 NA Intergenic Intergenic -3483 NM_001185106 257068 Hs.477114 NM_153268 ENSG00000240891 PLCXD2 - phosphatidylinositol specific phospholipase C X domain containing 2 protein-coding 177.333-53 chr5 161368204 161368468 + 1.33333 NA intron (NM_000813, intron 6 of 9) intron (NM_000813, intron 6 of 9) 179788 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 256-20 chrX 98079214 98079622 + 1.33333 NA Intergenic Intergenic -514883 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 265.001 chr2 146268353 146268948 + 1.33333 NA Intergenic Intergenic -318407 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 202.166 chr12 24895544 24895757 + 1.33333 NA intron (NM_001178092, intron 1 of 8) intron (NM_001178092, intron 1 of 8) 6572 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 329-2 chr11 50650443 50650972 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr 241560 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 287-6 chr22 31277807 31278060 + 1.33333 NA TTS (NM_001031801) TTS (NM_001031801) 14555 NM_052880 113791 Hs.26670 NM_052880 ENSG00000100100 PIK3IP1 HGFL|TrIP|hHGFL(S) phosphoinositide-3-kinase interacting protein 1 protein-coding 234-13 chr16 8485879 8486242 + 1.33333 NA Intergenic Intergenic 103778 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 146-8 chr11 33200590 33200731 + 1.33333 NA Intergenic L1MC|LINE|L1 39003 NR_034027 338739 Hs.423476 NR_034027 ENSG00000247151 CSTF3-DT CSTF3-AS1 CSTF3 divergent transcript ncRNA 144.833-25 chr17 47388695 47388848 + 1.33333 NA intron (NM_001195192, intron 12 of 21) L1MB7|LINE|L1 64816 NM_001195192 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 135-17 chr11 86428455 86428625 + 1.33333 NA Intergenic L1MA7|LINE|L1 53653 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 295.5-6 chr22 26219316 26219698 + 1.33333 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 50033 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 125.666 chr21 19569926 19570055 + 1.33333 NA Intergenic L1ME1|LINE|L1 329765 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 123.666 chr5 7929268 7929389 + 1.33333 NA Intergenic Intergenic 60180 NR_157171 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 204.5-3 chr1 28399865 28400063 + 1.33333 NA intron (NM_001350160, intron 2 of 14) L2a|LINE|L2 30224 NM_001048183 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 378.834 chr17 20036408 20036804 + 1.33333 NA intron (NM_001243439, intron 1 of 14) L1MA8|LINE|L1 27247 NM_001243439 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 407.833-4 chr2 164899554 164899950 + 1.33333 NA intron (NM_001199148, intron 10 of 10) L1MA9|LINE|L1 55773 NM_001351539 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 313.833-2 chr12 70993289 70993771 + 1.33333 NA Intergenic Intergenic -72792 NM_002849 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 354.333-2 chr5 105252450 105252810 + 1.33333 NA Intergenic L1MEf|LINE|L1 153156 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 114-108 chr9 35988171 35988388 + 1.33333 NA Intergenic Intergenic -30125 NM_019897 56656 Hs.553540 NM_019897 ENSG00000278889 OR2S2 OR37A|OST715 olfactory receptor family 2 subfamily S member 2 (gene/pseudogene) protein-coding 158.667-14 chr10 88495251 88495493 + 1.33333 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 87946 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 454.166-3 chr15 59035667 59036103 + 1.33333 NA intron (NM_001270529, intron 2 of 13) THE1B-int|LTR|ERVL-MaLR 47739 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 251.833-9 chr6 135357920 135358248 + 1.33333 NA intron (NM_017651, intron 23 of 27) intron (NM_017651, intron 23 of 27) 118924 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 280-8 chr2 40317296 40317630 + 1.33333 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 112841 NM_021097 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 248.667-15 chr2 133638163 133638484 + 1.33333 NA Intergenic L1MEd|LINE|L1 -69860 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 218-34 chr4 177921936 177922134 + 1.33333 NA intron (NR_028342, intron 2 of 5) L1M1|LINE|L1 -14099 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 195.501 chr1 216043519 216043724 + 1.33333 NA intron (NM_206933, intron 32 of 71) intron (NM_206933, intron 32 of 71) -28844 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 362.833 chr12 56239790 56240438 + 1.33333 NA 3' UTR (NM_173595, exon 28 of 28) 3' UTR (NM_173595, exon 28 of 28) 9397 NM_001135195 283375 Hs.591018 NM_173596 ENSG00000139540 SLC39A5 LZT-Hs7|MYP24|ZIP5 solute carrier family 39 member 5 protein-coding 229.5-9 chr13 46813425 46813625 + 1.33333 NA Intergenic L1ME1|LINE|L1 -16364 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 386.666-3 chr9 23311585 23311987 + 1.33333 NA Intergenic Intergenic 360613 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 289.667-3 chr13 81433013 81433413 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger -206230 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 246.666-7 chr5 149126382 149126662 + 1.33333 NA Intergenic L2c|LINE|L2 -14925 NM_001345859 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 233.333-23 chr2 144201738 144202036 + 1.33333 NA intron (NM_001284238, intron 4 of 13) intron (NM_001284238, intron 4 of 13) 9692 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 226.666-2 chr14 60034616 60034944 + 1.33333 NA intron (NR_075071, intron 29 of 32) L1MA4|LINE|L1 -57131 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 150.333-29 chr12 29472158 29472419 + 1.33333 NA intron (NM_001353179, intron 15 of 25) L2a|LINE|L2 27405 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 333.667-2 chr3 90450783 90451344 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr 1343442 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 201.333-46 chrX 14354757 14354957 + 1.33333 NA Intergenic LTR89|LTR|ERVL? 110592 NR_110506 286480 Hs.567831 NR_110506 UBE2E4P UbcM2 ubiquitin conjugating enzyme E2 E4 pseudogene pseudo 321.333-3 chr12 63004941 63005292 + 1.33333 NA Intergenic Intergenic -69966 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 186.5-24 chr14 50929898 50930149 + 1.33333 NA intron (NM_002863, intron 4 of 19) intron (NM_002863, intron 4 of 19) 14460 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 167.333-59 chr5 168583341 168583527 + 1.33333 NA Intergenic (GATGTTT)n|Simple_repeat|Simple_repeat -4066 NM_024594 79646 Hs.388400 NM_024594 ENSG00000120137 PANK3 - pantothenate kinase 3 protein-coding 450.167 chr10 120311969 120312620 + 1.33333 NA Intergenic Intergenic 42929 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 144.667-40 chr14 74285138 74285351 + 1.33333 NA TTS (NM_020325) TTS (NM_020325) 17690 NM_001353597 5826 Hs.94395 NM_005050 ENSG00000119688 ABCD4 ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L ATP binding cassette subfamily D member 4 protein-coding 341-6 chr7 9087971 9088265 + 1.33333 NA Intergenic L1MC|LINE|L1 -546152 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 201.667-2 chr1 65489888 65490117 + 1.33333 NA intron (NM_001003679, intron 2 of 19) MIRb|SINE|MIR -35649 NM_001198687 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 481.167-2 chr8 125227786 125228414 + 1.33333 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 136240 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 156.833-45 chr5 41186560 41186724 + 1.33333 NA intron (NM_000065, intron 5 of 17) intron (NM_000065, intron 5 of 17) 26890 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 391.334-2 chr18 12698050 12698518 + 1.33333 NA intron (NM_001271989, intron 3 of 10) AluSx1|SINE|Alu 4439 NM_024899 79959 Hs.236940 NM_024899 ENSG00000101624 CEP76 C18orf9|HsT1705 centrosomal protein 76 protein-coding 352.666 chr1 216260841 216261195 + 1.33333 NA intron (NM_206933, intron 11 of 71) intron (NM_206933, intron 11 of 71) 162378 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 232.166 chr18 60417320 60417714 + 1.33333 NA Intergenic L1MA4|LINE|L1 -44742 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 216.333-37 chr5 111316410 111316679 + 1.33333 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 92160 NM_001323377 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 292.5-13 chr4 65121298 65121538 + 1.33333 NA Intergenic L1MCa|LINE|L1 -116918 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 150.166-2 chr2 231368978 231369171 + 1.33333 NA intron (NM_001352754, intron 23 of 24) intron (NM_001352754, intron 23 of 24) 6366 NR_039937 100616317 NR_039937 ENSG00000263641 MIR4777 - microRNA 4777 ncRNA 341.333-6 chr6 114912146 114912666 + 1.33333 NA Intergenic L1M5|LINE|L1 731429 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 281.833 chr1 218267885 218268334 + 1.33333 NA Intergenic L1MDa|LINE|L1 -17184 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 243.166-2 chr3 93828746 93828996 + 1.33333 NA Intergenic L1PA3|LINE|L1 145210 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 227.666 chr12 26831566 26831924 + 1.33333 NA intron (NM_002223, intron 1 of 56) intron (NM_002223, intron 1 of 56) 1449 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 157.666 chr1 111348023 111348296 + 1.33333 NA intron (NM_181643, intron 3 of 5) intron (NM_181643, intron 3 of 5) 1537 NM_181643 128344 Hs.172510 NM_181643 ENSG00000173947 PIFO C1orf88|pitchfork primary cilia formation protein-coding 256.667-28 chr9 6873430 6873799 + 1.33333 NA intron (NR_148680, intron 5 of 21) Tigger1|DNA|TcMar-Tigger 116264 NM_001354000 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 177-35 chr2 133227546 133227801 + 1.33333 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -38522 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 360.833-2 chr10 43397954 43398552 + 1.33333 NA promoter-TSS (NM_001098207) promoter-TSS (NM_001098207) -907 NM_001098207 3185 Hs.808 NM_004966 ENSG00000169813 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 318-7 chr5 92832966 92833324 + 1.33333 NA Intergenic L1PA10|LINE|L1 738198 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 342.5-9 chr5 9409915 9410197 + 1.33333 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -101277 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 238-7 chr14 54805161 54805451 + 1.33333 NA Intergenic MIR|SINE|MIR 50473 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 221.833-26 chr8 83195229 83195450 + 1.33333 NA Intergenic L1MC4|LINE|L1 -208419 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 383.833 chr5 131009681 131010163 + 1.33333 NA Intergenic L1MA3|LINE|L1 155334 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 243-7 chr10 113420424 113420922 + 1.33333 NA Intergenic Intergenic -130158 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 220.5-38 chr8 124082767 124083331 + 1.33333 NA intron (NM_001039112, intron 33 of 40) L1MA3|LINE|L1 -42267 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 343.999 chr1 162181061 162181361 + 1.33333 NA intron (NM_014697, intron 2 of 9) Tigger18a|DNA|TcMar-Tigger 24104 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 379.666-2 chr7 71507053 71507488 + 1.33333 NA intron (NM_022479, intron 5 of 10) intron (NM_022479, intron 5 of 10) -199500 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 143.5-23 chr14 47360587 47360724 + 1.33333 NA intron (NM_001113498, intron 1 of 16) L1MA9|LINE|L1 -17409 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 258.666 chr2 46301841 46302095 + 1.33333 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 4561 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 245.333-17 chr6 8690249 8690554 + 1.33333 NA intron (NR_038980, intron 3 of 4) L1MD1|LINE|L1 38192 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 266-14 chr22 21109269 21109613 + 1.33333 NA intron (NR_037566, intron 1 of 5) L1ME2|LINE|L1 6425 NR_037566 400892 Hs.745077 NM_207474 BCRP2 BCR-2|BCR2|BCRL2 BCR pseudogene 2 pseudo 393.167-2 chr3 181465323 181465891 + 1.33333 NA intron (NR_075091, intron 3 of 7) A-rich|Low_complexity|Low_complexity -23121 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 290.333 chr1 188819993 188820356 + 1.33333 NA Intergenic Intergenic 1376546 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 221.5-36 chr8 77947329 77947656 + 1.33333 NA Intergenic Charlie9|DNA|hAT-Charlie 496795 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 314.5-9 chr3 68823364 68823933 + 1.33333 NA intron (NM_001005527, intron 3 of 5) L1PA10|LINE|L1 108899 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 291.333-5 chr2 74590760 74591099 + 1.33333 NA intron (NM_001321739, intron 4 of 10) L2b|LINE|L2 36769 NM_001318867 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 335.333-5 chr5 147079221 147079655 + 1.33333 NA intron (NM_181677, intron 2 of 10) (TA)n|Simple_repeat|Simple_repeat 2032 NM_181677 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 319.833-6 chr6 53275363 53275875 + 1.33333 NA intron (NM_001242830, intron 4 of 6) intron (NM_001242830, intron 4 of 6) -1374 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 310.999 chr1 182416333 182416713 + 1.33333 NA Intergenic Intergenic 8902 NR_034131 388719 Hs.508989 NM_001010899 ENSG00000203729 LINC00272 C1orf120|NCRNA00272 long intergenic non-protein coding RNA 272 ncRNA 327.5-2 chr2 52404120 52404500 + 1.33333 NA intron (NR_135237, intron 10 of 10) intron (NR_135237, intron 10 of 10) 33662 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 233.666-3 chr17 62051257 62051581 + 1.33333 NA intron (NM_005121, intron 3 of 29) MLT1J|LTR|ERVL-MaLR 13859 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 176.333-11 chr10 84677032 84677280 + 1.33333 NA Intergenic Intergenic 251987 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 207-48 chr7 130166961 130167335 + 1.33333 NA intron (NR_156699, intron 14 of 14) HAL1|LINE|L1 25417 NR_149034 100128325 Hs.105944 NR_149033 ENSG00000229196 LOC100128325 - uncharacterized LOC100128325 ncRNA 235.333-26 chr8 86217279 86217667 + 1.33333 NA exon (NM_138817, exon 3 of 4) exon (NM_138817, exon 3 of 4) 12908 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 181.666-6 chr7 97087343 97087573 + 1.33333 NA Intergenic Intergenic -29135 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 280.666-6 chr7 47489689 47490027 + 1.33333 NA intron (NM_022748, intron 3 of 30) intron (NM_022748, intron 3 of 30) -25055 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 289.833-6 chr3 135993875 135994443 + 1.33333 NA intron (NM_001190447, intron 1 of 12) HAL1|LINE|L1 28431 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 141.5-67 chr4 87804436 87804575 + 1.33333 NA intron (NM_004967, intron 4 of 6) intron (NM_004967, intron 4 of 6) 4951 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 164.666-2 chr2 70287846 70287996 + 1.33333 NA intron (NM_001317165, intron 3 of 4) intron (NM_001317165, intron 3 of 4) 5303 NM_001317167 6637 Hs.465167 NM_003096 ENSG00000143977 SNRPG SMG|Sm-G small nuclear ribonucleoprotein polypeptide G protein-coding 250.333-16 chr3 146826948 146827182 + 1.33333 NA Intergenic L1M3|LINE|L1 -94858 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 439.666 chr4 75757479 75757973 + 1.33333 NA intron (NM_003715, intron 4 of 23) intron (NM_003715, intron 4 of 23) 33204 NM_003715 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 262.833-9 chr20 38060964 38061412 + 1.33333 NA intron (NM_021215, intron 5 of 6) L1MB2|LINE|L1 27442 NM_021215 58490 Hs.278839 NM_021215 ENSG00000101413 RPRD1B C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 235.666 chr10 9288822 9289043 + 1.33333 NA intron (NR_120635, intron 2 of 4) intron (NR_120635, intron 2 of 4) 6661 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 229.833-14 chr4 61275799 61276198 + 1.33333 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 73826 NM_001371342 401.833-3 chr8 120931004 120931412 + 1.33333 NA Intergenic MLT1F|LTR|ERVL-MaLR -119162 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 181-24 chr15 83173446 83173713 + 1.33333 NA intron (NM_016073, intron 1 of 5) L2a|LINE|L2 34244 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 339 chr1 155555557 155556005 + 1.33333 NA intron (NM_018489, intron 1 of 27) intron (NM_018489, intron 1 of 27) -6261 NR_147964 645676 Hs.568693 NR_027023 ENSG00000235919 ASH1L-AS1 - ASH1L antisense RNA 1 ncRNA 249-3 chr10 50549763 50550189 + 1.33333 NA intron (NM_147156, intron 2 of 10) intron (NM_147156, intron 2 of 10) 73980 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 166.666-3 chr5 25321485 25321650 + 1.33333 NA Intergenic Intergenic 130614 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 225.5-15 chr13 113323109 113323444 + 1.33333 NA TTS (NM_001286733) TTS (NM_001286733) 26037 NM_005561 3916 Hs.494419 NM_005561 ENSG00000185896 LAMP1 CD107a|LAMPA|LGP120 lysosomal associated membrane protein 1 protein-coding 173.5-26 chr18 4349350 4349616 + 1.33333 NA intron (NM_001242761, intron 1 of 11) L1MA9|LINE|L1 84881 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 218.666-4 chr3 152392840 152393024 + 1.33333 NA intron (NM_001314057, intron 2 of 11) intron (NM_001314057, intron 2 of 11) -51942 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 267-9 chr5 73581552 73581818 + 1.33333 NA 3' UTR (NM_032175, exon 13 of 13) 3' UTR (NM_032175, exon 13 of 13) 15942 NM_032175 84135 Hs.406703 NM_032175 ENSG00000164338 UTP15 NET21 UTP15 small subunit processome component protein-coding 284.666-2 chr11 123051142 123051429 + 1.33333 NA Intergenic Intergenic 6871 NR_003125 85391 NR_003125 ENSG00000200879 SNORD14E - small nucleolar RNA, C/D box 14E snoRNA 180-39 chr4 133545804 133546013 + 1.33333 NA Intergenic Intergenic 396614 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 338.667-4 chr20 11139065 11139588 + 1.33333 NA Intergenic Intergenic 112782 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 182.667-52 chr6 168550061 168550249 + 1.33333 NA intron (NM_001166412, intron 7 of 12) intron (NM_001166412, intron 7 of 12) 108971 NM_001166412 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 230-15 chr2 194409014 194409355 + 1.33333 NA intron (NR_110222, intron 4 of 5) intron (NR_110222, intron 4 of 5) 64915 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 143.5-11 chr11 85109031 85109228 + 1.33333 NA intron (NM_001351274, intron 5 of 26) MLT1O|LTR|ERVL-MaLR -185708 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 168.667-56 chr3 89780289 89780523 + 1.33333 NA Intergenic Intergenic 672785 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 197.333-38 chr4 36917293 36917455 + 1.33333 NA Intergenic MER39B|LTR|ERV1 -84405 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 366.333-6 chr4 49149293 49149885 + 1.33333 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 162947 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 213.833-18 chr2 180474665 180474964 + 1.33333 NA Intergenic MLT1O|LTR|ERVL-MaLR -217290 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 278.333-3 chr11 104020037 104020408 + 1.33333 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) -16418 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 242.834-3 chr12 59784587 59785130 + 1.33333 NA non-coding (NR_073056, exon 7 of 7) non-coding (NR_073056, exon 7 of 7) 95488 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 179.666-3 chrX 54696903 54697141 + 1.33333 NA Intergenic L1MA3|LINE|L1 101233 NM_198510 347365 Hs.454272 NM_198510 ENSG00000102313 ITIH6 ITIH5L|UNQ6369|dJ14O9.1 inter-alpha-trypsin inhibitor heavy chain family member 6 protein-coding 356.833 chr3 102583480 102583915 + 1.33333 NA Intergenic Intergenic 148682 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 197.5-20 chr14 63664501 63665016 + 1.33333 NA Intergenic LTR16A1|LTR|ERVL -22887 NM_080666 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 304.333-10 chr5 129371653 129372084 + 1.33333 NA Intergenic Intergenic 25279 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 250.333-17 chr4 77908996 77909237 + 1.33333 NA intron (NM_020236, intron 6 of 8) MLT1E1A|LTR|ERVL-MaLR 46286 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 132.833-38 chr20 3938808 3939146 + 1.33333 NA intron (NM_001134337, intron 4 of 5) AluJo|SINE|Alu -21414 NR_031722 100302282 NR_031722 ENSG00000283320 MIR103B2 MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as microRNA 103b-2 ncRNA 221.333-18 chr4 33540129 33540350 + 1.33333 NA Intergenic Intergenic 499654 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 187.5-15 chr15 58423870 58424059 + 1.33333 NA Intergenic Intergenic -8027 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 241.833-7 chr12 9254280 9254532 + 1.33333 NA intron (NR_137434, intron 4 of 6) intron (NR_137434, intron 4 of 6) 14403 NR_137430 100499405 Hs.182314 NR_036466 ENSG00000237248 LINC00987 - long intergenic non-protein coding RNA 987 ncRNA 324.999 chr21 22777408 22777659 + 1.33333 NA Intergenic Intergenic -301751 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 218.667-30 chr5 149105244 149105541 + 1.33333 NA intron (NR_122044, intron 2 of 2) MER2|DNA|TcMar-Tigger -36055 NM_001345859 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 351.333-8 chr7 50200224 50200680 + 1.33333 NA Intergenic Intergenic -103612 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 131.167-81 chr8 108416372 108416596 + 1.33333 NA Intergenic L1ME1|LINE|L1 -27099 NM_001329493 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 388.667 chr1 69952367 69952983 + 1.33333 NA intron (NM_001370785, intron 8 of 26) intron (NM_001370785, intron 8 of 26) 33353 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 269-18 chr8 136250819 136251217 + 1.33333 NA Intergenic L1MB7|LINE|L1 -279780 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 260.666-2 chr14 62155366 62155592 + 1.33333 NA Intergenic L1PA16|LINE|L1 -15506 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 298.5-9 chr2 39476106 39476446 + 1.33333 NA intron (NR_037875, intron 3 of 5) L1MEi|LINE|L1 38860 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 222.166-2 chr11 111420450 111420765 + 1.33333 NA Intergenic Intergenic -2421 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 261.333-23 chr7 26411660 26411920 + 1.33333 NA intron (NR_148503, intron 2 of 6) MamTip2|DNA|hAT-Tip100 -12372 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 330.666-4 chr8 26795911 26796324 + 1.33333 NA intron (NM_001322504, intron 1 of 1) L1MC5|LINE|L1 69538 NM_033302 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 299.666-2 chr22 27945431 27945734 + 1.33333 NA intron (NR_026963, intron 2 of 4) AluJr|SINE|Alu -24970 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 268.833-6 chr15 57850937 57851192 + 1.33333 NA Intergenic Intergenic 144350 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 310.667-3 chr18 4559791 4560200 + 1.33333 NA Intergenic L1PA8|LINE|L1 -104688 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 188-31 chr2 156930365 156930862 + 1.33333 NA Intergenic Intergenic -327092 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 384.334 chr4 61082064 61082510 + 1.33333 NA Intergenic Intergenic -61369 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 356.5-5 chr6 148662597 148663072 + 1.33333 NA Intergenic L1MA4|LINE|L1 -84196 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 190-10 chr11 40340522 40340716 + 1.33333 NA intron (NM_020929, intron 2 of 4) MIRb|SINE|MIR -47489 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 284.333-8 chr7 38756525 38756877 + 1.33333 NA intron (NM_014396, intron 19 of 28) intron (NM_014396, intron 19 of 28) -69612 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 345.999 chr4 46513419 46513694 + 1.33333 NA Intergenic MLT1F2|LTR|ERVL-MaLR -123428 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 184.5-8 chr10 76385689 76385859 + 1.33333 NA intron (NM_001305581, intron 6 of 6) L2c|LINE|L2 -502270 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 276.333-10 chr2 203432501 203432808 + 1.33333 NA TTS (NM_001282927) TTS (NM_001282927) 65770 NM_001282927 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 150.333-90 chr6 112226671 112226818 + 1.33333 NA intron (NM_001105206, intron 2 of 38) intron (NM_001105206, intron 2 of 38) -9852 NR_121193 101927640 Hs.510007 NR_121193 LOC101927640 - uncharacterized LOC101927640 ncRNA 381.667-5 chr8 125088659 125089144 + 1.33333 NA intron (NM_014846, intron 1 of 28) L2a|LINE|L2 2891 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 171-32 chr21 19087586 19087724 + 1.33333 NA Intergenic MIR|SINE|MIR -327843 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 339.666-2 chr6 64540511 64541039 + 1.33333 NA intron (NM_001292009, intron 26 of 43) AluSx|SINE|Alu 733939 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 213.333-23 chr21 29030611 29030830 + 1.33333 NA exon (NM_006447, exon 3 of 18) exon (NM_006447, exon 3 of 18) 6052 NM_006447 10600 Hs.99819 NM_006447 ENSG00000156256 USP16 UBP-M|UBPM ubiquitin specific peptidase 16 protein-coding 337.333-4 chr12 94352574 94353021 + 1.33333 NA intron (NR_160431, intron 7 of 12) L1MA5|LINE|L1 90276 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 273.333-2 chr10 33967453 33967794 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -194943 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 317.999 chr18 2591934 2592265 + 1.33333 NA intron (NM_006101, intron 10 of 16) intron (NM_006101, intron 10 of 16) 20542 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 440.333 chr2 80601872 80602582 + 1.33333 NA intron (NM_001282599, intron 9 of 11) intron (NM_001282599, intron 9 of 11) 288848 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 219.333-29 chr4 65323848 65324066 + 1.33333 NA 3' UTR (NM_001281766, exon 17 of 17) 3' UTR (NM_001281766, exon 17 of 17) -319457 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 456.666 chr6 52422895 52423391 + 1.33333 NA intron (NM_001172420, intron 1 of 11) L1ME4c|LINE|L1 2135 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 342.333-4 chr6 136528596 136528863 + 1.33333 NA intron (NM_001198617, intron 1 of 15) intron (NM_001198617, intron 1 of 15) -2019 NM_001198619 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 349.333-3 chr2 167522737 167523173 + 1.33333 NA Intergenic Intergenic -295717 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 239.833-12 chr2 35370501 35370798 + 1.33333 NA Intergenic MIRc|SINE|MIR -100756 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 476.167 chr4 36990299 36990876 + 1.33333 NA Intergenic L1MEg|LINE|L1 -11192 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 279.167 chr1 13750485 13750822 + 1.33333 NA intron (NM_001135610, intron 6 of 7) intron (NM_001135610, intron 6 of 7) 1238 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 317.333-10 chr6 166992337 166992730 + 1.33333 NA Intergenic L2b|LINE|L2 5379 NR_037504 100500857 NR_037504 ENSG00000265828 MIR3939 mir-3939 microRNA 3939 ncRNA 235.333-7 chr14 58692498 58692706 + 1.33333 NA Intergenic Intergenic 53765 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 279.166-4 chr8 130337930 130338166 + 1.33333 NA intron (NM_001362925, intron 3 of 29) MIRb|SINE|MIR -41515 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 352.333-3 chr17 52982771 52983292 + 1.33333 NA Intergenic Intergenic -2474 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 207-4 chr10 125111581 125111925 + 1.33333 NA intron (NM_001083914, intron 1 of 10) intron (NM_001083914, intron 1 of 10) 47024 NM_001321014 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 374.5 chr15 93922142 93922571 + 1.33333 NA intron (NR_120320, intron 8 of 8) L1M4|LINE|L1 21655 NR_120322 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 183.167-50 chr5 128643511 128643678 + 1.33333 NA Intergenic L1MC|LINE|L1 -105349 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 294.166-2 chr2 68452880 68453202 + 1.33333 NA Intergenic FLAM_C|SINE|Alu 14253 NR_133923 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 225.666 chr21 16987911 16988162 + 1.33333 NA Intergenic L1M1|LINE|L1 397799 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 282.666-4 chr21 16105883 16106170 + 1.33333 NA intron (NR_111005, intron 1 of 6) intron (NR_111005, intron 1 of 6) 34912 NR_111004 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 162.333-59 chr5 63385097 63385331 + 1.33333 NA Intergenic Intergenic 577078 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 359.5 chr1 200130446 200130924 + 1.33333 NA intron (NM_205860, intron 7 of 7) intron (NM_205860, intron 7 of 7) 87860 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 424.5-2 chr7 14873220 14873736 + 1.33333 NA intron (NM_001350717, intron 1 of 24) intron (NM_001350717, intron 1 of 24) 29273 NM_001350723 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 197.5-36 chr3 103680135 103680314 + 1.33333 NA Intergenic Intergenic -156108 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 225.333-33 chr8 121197583 121197909 + 1.33333 NA Intergenic Tigger4b|DNA|TcMar-Tigger -385700 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 171.167-51 chr5 131532133 131532406 + 1.33333 NA intron (NM_016340, intron 6 of 27) intron (NM_016340, intron 6 of 27) 102960 NM_001164386 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 148.333-30 chr13 77834338 77834674 + 1.33333 NA non-coding (NR_103853, exon 6 of 7) non-coding (NR_103853, exon 6 of 7) 15569 NR_103853 100505518 Hs.742215 NR_103853 EDNRB-AS1 - EDNRB antisense RNA 1 ncRNA 412.499-2 chrX 46071537 46071982 + 1.33333 NA Intergenic Intergenic -220269 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 248.5-8 chr21 23978215 23978516 + 1.33333 NA Intergenic MLT1L|LTR|ERVL-MaLR 343012 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 168.667-25 chr16 56798330 56798484 + 1.33333 NA intron (NM_001242796, intron 1 of 19) intron (NM_001242796, intron 1 of 19) 14951 NM_001242796 9688 Hs.276878 NM_014669 ENSG00000102900 NUP93 NIC96 nucleoporin 93 protein-coding 171.333-67 chr8 126909055 126909279 + 1.33333 NA Intergenic Intergenic -103987 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 258.833-8 chr15 38957296 38957619 + 1.33333 NA Intergenic MER63D|DNA|hAT-Blackjack 260859 NR_160786 119.333-31 chr15 88054736 88054898 + 1.33333 NA intron (NM_001007156, intron 13 of 15) MIR|SINE|MIR -108549 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 164-32 chr2 45412157 45412342 + 1.33333 NA intron (NM_018079, intron 19 of 20) L1ME2z|LINE|L1 -157308 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 212.667-22 chr18 2339287 2339673 + 1.33333 NA Intergenic Intergenic 232025 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 238-2 chr1 96663903 96664243 + 1.33333 NA Intergenic L1MC1|LINE|L1 -57532 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 346.666-3 chr3 33900743 33901064 + 1.33333 NA Intergenic Intergenic 102273 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 257-12 chr5 110965269 110965564 + 1.33333 NA Intergenic Intergenic -104664 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 196-31 chr19 34065377 34065589 + 1.33333 NA Intergenic Intergenic -107021 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 225.833-5 chr14 50551254 50551535 + 1.33333 NA intron (NM_001127713, intron 1 of 13) L1PB2|LINE|L1 -8631 NM_015915 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 328.5-2 chr16 74583506 74583838 + 1.33333 NA intron (NR_027264, intron 1 of 26) AluSq2|SINE|Alu 23442 NM_012201 2734 Hs.109731 NM_012201 ENSG00000090863 GLG1 CFR-1|ESL-1|MG-160|MG160 golgi glycoprotein 1 protein-coding 262-21 chr5 104612086 104612355 + 1.33333 NA Intergenic Intergenic -487254 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 280.833-4 chr2 188091439 188091801 + 1.33333 NA intron (NR_126396, intron 2 of 2) intron (NR_126396, intron 2 of 2) 196071 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 114.167-15 chr11 73460905 73461079 + 1.33333 NA intron (NM_001286051, intron 2 of 5) MIR3|SINE|MIR 84324 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 340.333-10 chr3 190264530 190264929 + 1.33333 NA Intergenic LTR54|LTR|ERV1 57717 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 185.666-4 chr17 31084113 31084353 + 1.33333 NA Intergenic Charlie7|DNA|hAT-Charlie 10192 NR_039886 100616266 NR_039886 ENSG00000265444 MIR4733 - microRNA 4733 ncRNA 256.666-2 chr2 119423451 119423875 + 1.33333 NA Intergenic MER112|DNA|hAT-Charlie -8191 NM_183240 140738 Hs.26216 NM_183240 ENSG00000171227 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 172.667-25 chr14 75892098 75892314 + 1.33333 NA intron (NM_015072, intron 30 of 31) L1MEi|LINE|L1 89789 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 243.333-19 chr6 113827522 113827849 + 1.33333 NA Intergenic Intergenic -29660 NM_002356 4082 Hs.519909 NM_002356 ENSG00000277443 MARCKS 80K-L|MACS|PKCSL|PRKCSL myristoylated alanine rich protein kinase C substrate protein-coding 155.166 chr15 68368273 68368447 + 1.33333 NA intron (NM_001004439, intron 3 of 29) intron (NM_001004439, intron 3 of 29) 63803 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 196.666-3 chr8 86259293 86259524 + 1.33333 NA Intergenic Intergenic -29027 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 232-19 chr3 122788703 122788897 + 1.33333 NA intron (NM_001320728, intron 1 of 6) L1MB2|LINE|L1 5031 NM_001320728 79663 Hs.29169 NM_024610 ENSG00000169087 HSPBAP1 PASS1 HSPB1 associated protein 1 protein-coding 245.333-18 chr6 53792443 53792700 + 1.33333 NA Intergenic MIRb|SINE|MIR -2434 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 237-6 chr11 6039345 6039815 + 1.33333 NA Intergenic HUERS-P1-int|LTR|ERV1 -11839 NM_001001917 120796 Hs.553543 NM_001001917 ENSG00000180934 OR56A1 OR11-75 olfactory receptor family 56 subfamily A member 1 protein-coding 359.833-4 chr20 59482901 59483452 + 1.33333 NA Intergenic L1MB3|LINE|L1 -94333 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 391.333-3 chr4 39913429 39913977 + 1.33333 NA exon (NM_001100400, exon 9 of 16) exon (NM_001100400, exon 9 of 16) 64208 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 259.333-10 chr2 120593414 120593818 + 1.33333 NA Intergenic Intergenic -127267 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 194-19 chr14 73017013 73017265 + 1.33333 NA intron (NM_021260, intron 2 of 11) intron (NM_021260, intron 2 of 11) 9967 NM_021260 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 307.501-2 chr17 60134648 60134987 + 1.33333 NA Intergenic Intergenic -15156 NM_000717 762 Hs.89485 NM_000717 ENSG00000167434 CA4 CAIV|Car4|RP17 carbonic anhydrase 4 protein-coding 132.833-45 chr3 16699332 16699470 + 1.33333 NA Intergenic Intergenic -93978 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 401.333-3 chr5 7739254 7739611 + 1.33333 NA intron (NM_020546, intron 14 of 24) L1MEf|LINE|L1 111701 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 227.334-3 chr14 86407438 86407669 + 1.33333 NA Intergenic Intergenic 472875 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 363.333-4 chr15 61670918 61671530 + 1.33333 NA Intergenic L1MD|LINE|L1 -58694 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 252.666-4 chr5 135993388 135993608 + 1.33333 NA Intergenic Intergenic -35490 NM_000358 7045 Hs.369397 NM_000358 ENSG00000120708 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor beta induced protein-coding 245.666-2 chr5 18445647 18445923 + 1.33333 NA Intergenic L2a|LINE|L2 638511 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 221.333-27 chr8 22518995 22519328 + 1.33333 NA intron (NM_005605, intron 6 of 13) L1M2|LINE|L1 -32766 NM_005775 10174 Hs.528572 NM_005775 ENSG00000120896 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 367.333-4 chr7 106739170 106739563 + 1.33333 NA Intergenic MER77B|LTR|ERVL -78208 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 217-3 chr11 116944147 116944460 + 1.33333 NA intron (NM_001366687, intron 3 of 4) MER77B|LTR|ERVL -106353 NM_000039 335 Hs.93194 NM_000039 ENSG00000118137 APOA1 apo(a) apolipoprotein A1 protein-coding 226.166-2 chr1 186266590 186266910 + 1.33333 NA Intergenic L1M4a2|LINE|L1 -29523 NM_001127708 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 203.833-19 chr4 65279067 65279226 + 1.33333 NA Intergenic Intergenic -274646 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 376.832 chr12 78525675 78525957 + 1.33333 NA Intergenic Intergenic -166070 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 262.5-8 chr18 26413303 26413672 + 1.33333 NA Intergenic L1MC5|LINE|L1 -9508 NR_110762 100506787 Hs.734746 NR_110762 LINC01543 - long intergenic non-protein coding RNA 1543 ncRNA 193.667-3 chr1 153157289 153157490 + 1.33333 NA Intergenic L1MC5a|LINE|L1 -6499 NM_001014291 6706 Hs.490253 NM_001014291 ENSG00000159516 SPRR2G - small proline rich protein 2G protein-coding 381.999 chr16 68130537 68130952 + 1.33333 NA intron (NM_004555, intron 3 of 10) L1MA4|LINE|L1 45374 NM_004555 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NF-AT4c|NFAT4|NFATX nuclear factor of activated T cells 3 protein-coding 294.333-6 chr2 44451164 44451417 + 1.33333 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 89343 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 214.166 chr10 60685960 60686169 + 1.33333 NA intron (NM_001204403, intron 1 of 43) L1ME3Cz|LINE|L1 47464 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 184.666-5 chr3 154079879 154080140 + 1.33333 NA intron (NR_037901, intron 2 of 3) L2c|LINE|L2 -40994 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 126.5-4 chr1 232715775 232715995 + 1.33333 NA Intergenic L2a|LINE|L2 -2186 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 296.333 chr1 212709517 212709944 + 1.33333 NA Intergenic Arthur1B|DNA|hAT-Tip100 -9890 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 368.666 chr19 32148000 32148400 + 1.33333 NA Intergenic L1MDa|LINE|L1 -42284 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 218.666 chr10 99273235 99273562 + 1.33333 NA Intergenic L1PB1|LINE|L1 -37523 NM_021828 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 197.666-2 chr15 95977151 95977320 + 1.33333 NA Intergenic Intergenic 150606 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 226.333-31 chr5 7572444 7572713 + 1.33333 NA intron (NM_020546, intron 3 of 24) L1PA13|LINE|L1 176440 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 188-23 chr16 11498650 11498862 + 1.33333 NA intron (NM_001370704, intron 10 of 66) intron (NM_001370704, intron 10 of 66) 28491 NM_001370704 400499 Hs.459937 NM_001370704 ENSG00000188897 LOC400499 - putative uncharacterized protein LOC400499 protein-coding 270.166-2 chr14 48223251 48223695 + 1.33333 NA Intergenic Intergenic -428459 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 181.667-58 chr6 129600580 129600752 + 1.33333 NA exon (NM_033515, exon 11 of 15) exon (NM_033515, exon 11 of 15) 109511 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 331.499 chr12 2586216 2586558 + 1.33333 NA intron (NM_199460, intron 18 of 49).2 intron (NM_199460, intron 18 of 49).2 85833 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 215.333-49 chr8 32894809 32895025 + 1.33333 NA Intergenic Intergenic 173082 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 183.333-52 chr6 123569021 123569206 + 1.33333 NA intron (NM_001256020, intron 2 of 8) MSTA-int|LTR|ERVL-MaLR 67837 NM_001256020 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 418.167 chr3 70483398 70484076 + 1.33333 NA Intergenic L3|LINE|CR1 -171099 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 376.666-2 chr2 187136818 187137106 + 1.33333 NA Intergenic Intergenic -287792 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 155-53 chr4 56103463 56103836 + 1.33333 NA Intergenic Intergenic -66546 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 155.334 chr1 166355857 166356104 + 1.33333 NA Intergenic Intergenic 134059 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 223.333-16 chr2 97953385 97953638 + 1.33333 NA intron (NM_015348, intron 1 of 40) L1MDa|LINE|L1 42437 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 221.667-38 chr8 104617100 104617486 + 1.33333 NA Intergenic Intergenic -28269 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 220.167-12 chr15 83506729 83507016 + 1.33333 NA intron (NM_001324185, intron 2 of 9) intron (NM_001324185, intron 2 of 9) 16258 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 269.333-5 chr12 33842284 33842520 + 1.33333 NA Intergenic L1MA9|LINE|L1 -180094 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 223.666 chr4 42113764 42114082 + 1.33333 NA 3' UTR (NM_001159547, exon 6 of 6) 3' UTR (NM_001159547, exon 6 of 6) 38732 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 222.333-29 chr5 108407903 108408114 + 1.33333 NA Intergenic LTR37-int|LTR|ERV1 -25910 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 197-7 chr11 15704627 15704911 + 1.33333 NA intron (NM_001293172, intron 2 of 2) MIRc|SINE|MIR 60884 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 204-26 chr3 148531466 148531807 + 1.33333 NA Intergenic Intergenic -166235 NM_000685 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 395.333-3 chr17 48209671 48210407 + 1.33333 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -53528 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 346.333 chr10 52997662 52998027 + 1.33333 NA Intergenic L1M4|LINE|L1 -226144 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 252.499 chr2 76043681 76043896 + 1.33333 NA Intergenic Intergenic -332873 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 142.667-91 chr6 153964349 153964530 + 1.33333 NA Intergenic Intergenic -46057 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 160.667-52 chr3 51284486 51284724 + 1.33333 NA intron (NM_004947, intron 27 of 52) L1M3de|LINE|L1 -100686 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 251.333-23 chr9 113205775 113206003 + 1.33333 NA intron (NM_015258, intron 4 of 27) L1MB4|LINE|L1 15388 NM_015258 23307 Hs.522351 NM_015258 ENSG00000119321 FKBP15 FKBP133|KIAA0674|PPP1R76 FKBP prolyl isomerase 15 protein-coding 179.667-11 chr12 88091696 88092028 + 1.33333 NA intron (NM_025114, intron 29 of 53) intron (NM_025114, intron 29 of 53) 50354 NM_025114 80184 Hs.150444 NM_025114 ENSG00000198707 CEP290 3H11Ag|BBS14|CT87|JBTS5|LCA10|MKS4|NPHP6|POC3|SLSN6|rd16 centrosomal protein 290 protein-coding 370.333 chr12 58391554 58392088 + 1.33333 NA Intergenic Intergenic -199881 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 246.999 chr2 146846534 146846742 + 1.33333 NA Intergenic Intergenic 259581 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 139.333-57 chr22 28122655 28122835 + 1.33333 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -202133 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 142-76 chr5 107804125 107804278 + 1.33333 NA Intergenic MIRc|SINE|MIR -133264 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 572.833 chr4 37461686 37462448 + 1.33333 NA intron (NM_001104629, intron 1 of 3) intron (NM_001104629, intron 1 of 3) 8142 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 143-5 chr1 166645861 166646085 + 1.33333 NA Intergenic Intergenic 42057 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 320-2 chr15 65496110 65496540 + 1.33333 NA intron (NR_135485, intron 5 of 20) (ATG)n|Simple_repeat|Simple_repeat 20949 NM_197960 54878 Hs.458609 NM_017743 ENSG00000074603 DPP8 DP8|DPRP-1|DPRP1|MST097|MSTP097|MSTP135|MSTP141 dipeptidyl peptidase 8 protein-coding 129.5-69 chr5 16471274 16471397 + 1.33333 NA Intergenic Intergenic -5535 NM_033414 90441 Hs.60300 NM_033414 ENSG00000173545 ZNF622 ZPR9 zinc finger protein 622 protein-coding 323.166 chr11 113176483 113176962 + 1.33333 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) 97179 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 214.666-6 chr6 41947388 41947667 + 1.33333 NA intron (NM_001136017, intron 1 of 4) L2a|LINE|L2 -5679 NM_001760 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 173.333-10 chr1 247621479 247621744 + 1.33333 NA Intergenic L1MA7|LINE|L1 16025 NM_001001914 81469 Hs.653227 NM_001001914 ENSG00000177476 OR2G3 OR1-33 olfactory receptor family 2 subfamily G member 3 protein-coding 159.666 chr10 82945427 82945612 + 1.33333 NA intron (NR_163253, intron 6 of 10) MSTD|LTR|ERVL-MaLR -712599 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 196.666 chr1 218747040 218747333 + 1.33333 NA intron (NR_031644, intron 4 of 6) L1MA3|LINE|L1 171325 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 232.5-29 chr4 102064448 102064634 + 1.33333 NA intron (NM_017935, intron 13 of 16) MIR|SINE|MIR 250699 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 198.666-4 chr7 37430643 37430934 + 1.33333 NA intron (NM_001206480, intron 1 of 21) MIRb|SINE|MIR 18164 NM_014800 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 188-26 chr2 8310684 8310944 + 1.33333 NA intron (NR_034135, intron 2 of 8) intron (NR_034135, intron 2 of 8) 17605 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 230.667-4 chr10 73280522 73280856 + 1.33333 NA intron (NM_001367801, intron 20 of 27) L1M5|LINE|L1 27948 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 308.167 chr14 63013947 63014296 + 1.33333 NA intron (NM_139318, intron 2 of 10) intron (NM_139318, intron 2 of 10) 31337 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 272.666-2 chr15 86177539 86177822 + 1.33333 NA intron (NM_152336, intron 5 of 24) L1MEc|LINE|L1 -60963 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 144-75 chr8 129255576 129255775 + 1.33333 NA Intergenic Intergenic -14435 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 162.167-10 chr11 114982343 114982471 + 1.33333 NA Intergenic Intergenic 303880 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 207-28 chr21 21613413 21613591 + 1.33333 NA Intergenic Intergenic 123817 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 168-25 chr17 60420746 60420976 + 1.33333 NA Intergenic Intergenic -1628 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 231.333-31 chr7 47841551 47841769 + 1.33333 NA intron (NM_138295, intron 34 of 56) L1M5|LINE|L1 46369 NR_161269 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 266.666-3 chr3 167687063 167687319 + 1.33333 NA intron (NM_145859, intron 8 of 8) intron (NM_145859, intron 8 of 8) -29268 NM_001348951 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 157-2 chr1 43020849 43020973 + 1.33333 NA Intergenic MLT1K|LTR|ERVL-MaLR 61862 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 131.666-2 chr8 131399771 131399954 + 1.33333 NA Intergenic Intergenic -358953 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 297.667-3 chr3 20745931 20746546 + 1.33333 NA Intergenic Intergenic 403770 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 202-29 chr4 57486430 57486660 + 1.33333 NA Intergenic L2a|LINE|L2 60673 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 233.666-8 chr8 25617033 25617233 + 1.33333 NA Intergenic L1M4c|LINE|L1 157900 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 214.666-3 chr2 78229572 78229824 + 1.33333 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 61033 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 261.833-11 chr3 144060885 144061160 + 1.33333 NA Intergenic AluJr|SINE|Alu 87941 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 177.5-37 chr2 63876770 63876946 + 1.33333 NA intron (NM_001001521, intron 3 of 9) intron (NM_001001521, intron 3 of 9) 34978 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 148.833-31 chr2 48784528 48784713 + 1.33333 NA Intergenic Intergenic -28896 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 337.166 chr2 103167198 103167590 + 1.33333 NA Intergenic Intergenic -182965 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 292.834-2 chr11 54778362 54778742 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr 71720 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 376.167-3 chr7 30329275 30330018 + 1.33333 NA intron (NM_147128, intron 2 of 4) L1MA4|LINE|L1 -39756 NR_037513 100500883 NR_037513 ENSG00000283237 MIR550B1 - microRNA 550b-1 ncRNA 417.5 chr2 183217827 183218219 + 1.33333 NA Intergenic Intergenic 93580 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 282-4 chr1 235118121 235118379 + 1.33333 NA intron (NM_014765, intron 3 of 4) intron (NM_014765, intron 3 of 4) 9687 NR_002956 677802 Hs.744743 NR_002956 ENSG00000207181 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 248.166 chr8 99253120 99253307 + 1.33333 NA intron (NM_017890, intron 17 of 61) L1MB7|LINE|L1 239947 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 211.833-9 chr15 58119098 58119413 + 1.33333 NA Intergenic MamRTE1|LINE|RTE-BovB -18914 NM_001320636 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 180.5-54 chrX 15024075 15024280 + 1.33333 NA Intergenic Intergenic 138886 NM_001177475 158747 Hs.744919 NM_152581 ENSG00000130150 MOSPD2 - motile sperm domain containing 2 protein-coding 389.667 chr2 217533470 217534150 + 1.33333 NA intron (NR_026597, intron 2 of 12) MIRb|SINE|MIR 222783 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 236.666 chr11 38187657 38188000 + 1.33333 NA Intergenic Intergenic 249227 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 159.667-11 chr10 10385671 10385926 + 1.33333 NA Intergenic Intergenic 76551 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 277-4 chr15 49536908 49537331 + 1.33333 NA intron (NM_001330293, intron 9 of 10) L1MA9|LINE|L1 83699 NM_152647 196951 Hs.712959 NM_152647 ENSG00000166262 FAM227B C15orf33 family with sequence similarity 227 member B protein-coding 159.833-57 chr9 33009174 33009523 + 1.33333 NA intron (NM_001368996, intron 1 of 7) intron (NM_001368996, intron 1 of 7) -7707 NM_001195251 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 147.666-2 chr8 117063668 117063795 + 1.33333 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -71264 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 185.666-3 chr12 10084289 10084557 + 1.33333 NA intron (NM_001297748, intron 1 of 4) intron (NM_001297748, intron 1 of 4) 14562 NM_001297751 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 165.667-57 chr5 77528734 77529001 + 1.33333 NA Intergenic L1MB5|LINE|L1 -36551 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 251.333-14 chr20 62246602 62246799 + 1.33333 NA intron (NM_001363878, intron 1 of 14) intron (NM_001363878, intron 1 of 14) 8179 NM_144498 9885 Hs.473254 NM_014835 ENSG00000130703 OSBPL2 DFNA67|DNFA67|ORP-2|ORP2 oxysterol binding protein like 2 protein-coding 350.999 chr20 35481031 35481456 + 1.33333 NA intron (NM_007186, intron 20 of 34) AluJb|SINE|Alu 21260 NM_001318219 11190 Hs.443976 NM_007186 ENSG00000126001 CEP250 C-NAP1|CEP2|CNAP1|CRDHL2 centrosomal protein 250 protein-coding 379.333-2 chr3 26766483 26766978 + 1.33333 NA Intergenic Intergenic 72173 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 319.666 chr2 47940864 47941225 + 1.33333 NA Intergenic L1MB7|LINE|L1 -35251 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 263.5-19 chr4 163751346 163751707 + 1.33333 NA intron (NM_001166373, intron 3 of 7) L1MEd|LINE|L1 -137992 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 171.667-2 chr1 35976340 35976530 + 1.33333 NA intron (NM_024852, intron 5 of 18) L1MC4a|LINE|L1 45330 NM_024852 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 315.333-4 chr12 74166304 74166606 + 1.33333 NA intron (NR_038300, intron 4 of 6) L1PA16|LINE|L1 126176 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 254-9 chr18 3195666 3195998 + 1.33333 NA intron (NM_019856, intron 2 of 36) intron (NM_019856, intron 2 of 36) 24136 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 286.333-4 chr18 8019929 8020265 + 1.33333 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 346937 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 188.333-25 chr18 2542630 2542965 + 1.33333 NA intron (NM_001308401, intron 7 of 7) intron (NM_001308401, intron 7 of 7) 28708 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 260.333-14 chr5 35329861 35330288 + 1.33333 NA Intergenic L1PA13|LINE|L1 -99587 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 233.333-36 chr5 12364733 12365005 + 1.33333 NA Intergenic Intergenic -209988 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 395.834-3 chr5 105435900 105436428 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR 336690 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 140-63 chr4 167833202 167833309 + 1.33333 NA Intergenic MSTD|LTR|ERVL-MaLR -259282 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 430.167 chr8 103290137 103290716 + 1.33333 NA intron (NR_148215, intron 1 of 3) L1MA9|LINE|L1 -8068 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 226.333-27 chr4 76487552 76487774 + 1.33333 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 52434 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 146.667-90 chr8 77594213 77594349 + 1.33333 NA Intergenic Intergenic 143584 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 180-18 chr18 66360072 66360229 + 1.33333 NA Intergenic Intergenic 243940 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 195.333-34 chr3 54132201 54132648 + 1.33333 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 9872 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 221-34 chr8 76755509 76756013 + 1.33333 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -72486 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 194-34 chr2 150508712 150508952 + 1.33333 NA Intergenic Intergenic -21137 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 164-16 chr14 58115620 58115857 + 1.33333 NA TTS (NM_001320173) TTS (NM_001320173) 36475 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 212.333-21 chr2 170000498 170000867 + 1.33333 NA intron (NM_172070, intron 26 of 38) L2|LINE|L2 173174 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 247-11 chr21 37066369 37066690 + 1.33333 NA intron (NM_153682, intron 4 of 4) intron (NM_153682, intron 4 of 4) -2463 NR_131189 105372795 Hs.528019 NR_131189 LOC105372795 - uncharacterized LOC105372795 ncRNA 176.833-28 chr6 38763968 38764178 + 1.33333 NA intron (NM_001371, intron 10 of 91) intron (NM_001371, intron 10 of 91) 48762 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 222.333-34 chr8 5892968 5893201 + 1.33333 NA Intergenic L1M3|LINE|L1 513464 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 261.333-19 chr6 19918517 19918819 + 1.33333 NA Intergenic L1PA16|LINE|L1 81298 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 230.833-11 chr2 188438406 188438810 + 1.33333 NA intron (NM_016315, intron 2 of 11) intron (NM_016315, intron 2 of 11) 141116 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 242.666-2 chr12 11623522 11623734 + 1.33333 NA Intergenic MER31-int|LTR|ERV1 -26226 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 242-3 chr10 63416511 63416742 + 1.33333 NA intron (NM_001322258, intron 1 of 24) intron (NM_001322258, intron 1 of 24) -13949 NR_134312 105378330 Hs.602852 NR_134312 LOC105378330 - uncharacterized LOC105378330 ncRNA 302-15 chr19 56789494 56790115 + 1.33333 NA intron (NR_163143, intron 9 of 12) intron (NR_163143, intron 9 of 12) -22676 NR_023847 100169890 NR_023847 PEG3-AS1 APEG3|NCRNA00155|PEG3-AS|PEG3AS PEG3 antisense RNA 1 ncRNA 221.667-31 chr5 130441706 130441947 + 1.33333 NA Intergenic Intergenic 537361 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 170.167-10 chr12 9678504 9678815 + 1.33333 NA intron (NM_001197319, intron 1 of 2) AluJr|SINE|Alu 8946 NM_001197319 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 241.666-4 chr2 180500126 180500484 + 1.33333 NA Intergenic L1PA12|LINE|L1 -191799 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 177.333-66 chr8 114361184 114361348 + 1.33333 NA Intergenic L1PB1|LINE|L1 -924327 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 297.5 chr1 220566780 220567224 + 1.33333 NA intron (NM_018650, intron 1 of 17) L1ME4b|LINE|L1 38819 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 194-44 chr5 33067277 33067452 + 1.33333 NA Intergenic Intergenic 119921 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 390.833-2 chr6 53321508 53321853 + 1.33333 NA intron (NM_001242830, intron 1 of 6) intron (NM_001242830, intron 1 of 6) 15937 NR_046241 647190 Hs.520189 NR_046241 RPS16P5 RPS16_3_702 ribosomal protein S16 pseudogene 5 pseudo 189.667-44 chr6 159803875 159804265 + 1.33333 NA exon (NM_001271862, exon 5 of 19) exon (NM_001271862, exon 5 of 19) 3794 NM_001271862 154197 Hs.349077 NM_173516 ENSG00000146453 PNLDC1 HsPNLDC1 PARN like, ribonuclease domain containing 1 protein-coding 142.167-26 chr16 8493223 8493395 + 1.33333 NA Intergenic MLT1F2|LTR|ERVL-MaLR 96529 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 291.166-2 chr22 32204790 32205245 + 1.33333 NA promoter-TSS (NM_001364985) promoter-TSS (NM_001364985) -98 NR_149072 110806273 Hs.382171 NR_149072 ENSG00000242082 SLC5A4-AS1 - SLC5A4 antisense RNA 1 ncRNA 267.833-11 chr3 117899364 117899565 + 1.33333 NA Intergenic Intergenic -208539 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 166.166 chr6 149507307 149507435 + 1.33333 NA intron (NM_139126, intron 12 of 12) intron (NM_139126, intron 12 of 12) -22357 NM_207360 340152 Hs.632618 NM_207360 ENSG00000178199 ZC3H12D C6orf95|MCPIP4|TFL|dJ281H8.1|p34 zinc finger CCCH-type containing 12D protein-coding 167.333-67 chr8 124480187 124480341 + 1.33333 NA intron (NM_007218, intron 1 of 1) L1M5|LINE|L1 5497 NM_007218 11236 Hs.744151 NM_007218 ENSG00000170881 RNF139 HRCA1|RCA1|TRC8 ring finger protein 139 protein-coding 442.833 chr4 43734237 43734810 + 1.33333 NA Intergenic L1MA2|LINE|L1 -241980 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 329-5 chr19 15704675 15705048 + 1.33333 NA Intergenic L1PBb|LINE|L1 -23163 NM_013939 26538 Hs.247694 NM_013939 ENSG00000171942 OR10H2 - olfactory receptor family 10 subfamily H member 2 protein-coding 360.333 chr10 67250874 67251484 + 1.33333 NA intron (NM_001127384, intron 5 of 17) L1MB7|LINE|L1 152231 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 372.666-2 chr4 66498172 66498526 + 1.33333 NA Intergenic Intergenic 221525 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 233-12 chr17 52040350 52040626 + 1.33333 NA intron (NM_001082533, intron 3 of 9) L1ME1|LINE|L1 118226 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 265.666-3 chr20 47185411 47185657 + 1.33333 NA intron (NM_172110, intron 13 of 13) AluSz6|SINE|Alu 18567 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 220.334-8 chr5 170456489 170456742 + 1.33333 NA intron (NM_001034838, intron 1 of 7) L1M4|LINE|L1 -47405 NM_001034837 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 220-25 chr7 116502394 116502943 + 1.33333 NA intron (NM_001233, intron 2 of 2) intron (NM_001233, intron 2 of 2) 2622 NM_001206748 858 Hs.212332 NM_001233 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 172.333-71 chr7 93412316 93412458 + 1.33333 NA Intergenic Intergenic 70468 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 165-47 chr5 56468735 56468992 + 1.33333 NA intron (NR_104664, intron 1 of 4) intron (NR_104664, intron 1 of 4) 12906 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 258.333-3 chr1 101707574 101707900 + 1.33333 NA Intergenic L2|LINE|L2 139343 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 186.333-43 chr3 194857568 194857746 + 1.33333 NA Intergenic Intergenic -88948 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 307.167-4 chr7 37867498 37867925 + 1.33333 NA exon (NM_016616, exon 11 of 18) exon (NM_016616, exon 11 of 18) 19114 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 213.666-2 chrX 93263508 93263811 + 1.33333 NA Intergenic ERVL-E-int|LTR|ERVL 409919 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 453.999 chr4 37399169 37399742 + 1.33333 NA intron (NM_001144990, intron 3 of 6) intron (NM_001144990, intron 3 of 6) -54470 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 204.5-11 chr12 1161590 1161864 + 1.33333 NA intron (NR_027948, intron 7 of 19) intron (NR_027948, intron 7 of 19) 133979 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 220-12 chr2 58183072 58183403 + 1.33333 NA intron (NR_156742, intron 3 of 9) L1MD|LINE|L1 58143 NR_156742 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 236.667-15 chr18 6557950 6558289 + 1.33333 NA intron (NR_120518, intron 2 of 5) intron (NR_120518, intron 2 of 5) 46703 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 265.666-6 chr9 37689000 37689252 + 1.33333 NA intron (NM_001371223, intron 1 of 15) HAL1|LINE|L1 21117 NM_001371223 194.333-41 chr8 55295382 55295598 + 1.33333 NA intron (NM_052898, intron 1 of 2) L2c|LINE|L2 159831 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 192.666-5 chr3 97557885 97558119 + 1.33333 NA intron (NM_001080448, intron 11 of 17) intron (NM_001080448, intron 11 of 17) 118395 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 272.333-4 chr12 26611996 26612405 + 1.33333 NA intron (NM_002223, intron 26 of 56) intron (NM_002223, intron 26 of 56) 220994 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 170-2 chr1 94597696 94597854 + 1.33333 NA Intergenic MIRb|SINE|MIR 54073 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 260.999 chr6 136204916 136205224 + 1.33333 NA Intergenic L2c|LINE|L2 45241 NM_001099286 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 276.667-7 chr8 107201001 107201772 + 1.33333 NA Intergenic L1MB8|LINE|L1 135129 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 126-57 chr22 25572862 25573044 + 1.33333 NA intron (NM_001362778, intron 1 of 19) intron (NM_001362778, intron 1 of 19) 8278 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 182.333-24 chr17 35418127 35418520 + 1.33333 NA intron (NM_018042, intron 3 of 3) Tigger2a|DNA|TcMar-Tigger 14177 NM_018042 55106 Hs.663548 NM_018042 ENSG00000172123 SLFN12 SLFN3 schlafen family member 12 protein-coding 184-6 chr1 237877355 237877643 + 1.33333 NA intron (NR_027247, intron 3 of 11) intron (NR_027247, intron 3 of 11) 13423 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 282-23 chr7 30186214 30186567 + 1.33333 NA Intergenic THE1C|LTR|ERVL-MaLR 51404 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 187.333-48 chr3 9014865 9015090 + 1.33333 NA intron (NM_014850, intron 15 of 21) intron (NM_014850, intron 15 of 21) -51505 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 304.666-3 chr5 31605306 31605664 + 1.33333 NA Intergenic AluSq|SINE|Alu -33646 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 153-61 chr9 113038984 113039153 + 1.33333 NA 3' UTR (NM_001282515, exon 4 of 4) 3' UTR (NM_001282515, exon 4 of 4) 17656 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 175-58 chr6 147260561 147260794 + 1.33333 NA exon (NM_001127715, exon 5 of 28) exon (NM_001127715, exon 5 of 28) -56063 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 261.5-20 chr8 109541823 109542169 + 1.33333 NA intron (NM_001278938, intron 1 of 6) intron (NM_001278938, intron 1 of 6) 1370 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 348.166-3 chr2 125902384 125902778 + 1.33333 NA Intergenic Intergenic 215404 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 235-2 chr1 19191547 19192054 + 1.33333 NA intron (NM_020765, intron 11 of 105) intron (NM_020765, intron 11 of 105) 18466 NM_020765 23352 Hs.148078 NM_020765 ENSG00000127481 UBR4 RBAF600|ZUBR1|p600 ubiquitin protein ligase E3 component n-recognin 4 protein-coding 133.667-73 chr5 118313001 118313222 + 1.33333 NA Intergenic L1ME4a|LINE|L1 30537 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 293.333-13 chr5 28226602 28226862 + 1.33333 NA Intergenic L1MD1|LINE|L1 60933 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 234-17 chr18 3943099 3943340 + 1.33333 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -19134 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 229-33 chr4 115030826 115031408 + 1.33333 NA intron (NM_022569, intron 2 of 13) intron (NM_022569, intron 2 of 13) 82503 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 166.333-8 chr10 53931228 53931445 + 1.33333 NA intron (NM_001354411, intron 26 of 34) intron (NM_001354411, intron 26 of 34) -554894 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 296.666-3 chr20 19504631 19504972 + 1.33333 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -220205 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 202-45 chr8 131664522 131664977 + 1.33333 NA Intergenic L1M4|LINE|L1 -239344 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 237.333-4 chr11 56103003 56103212 + 1.33333 NA Intergenic Intergenic -1936 NM_001005200 390151 Hs.553744 NM_001005200 ENSG00000181767 OR8H2 OR11-171 olfactory receptor family 8 subfamily H member 2 protein-coding 169.333-14 chr11 114395567 114395813 + 1.33333 NA intron (NM_019021, intron 1 of 1) intron (NM_019021, intron 1 of 1) 4821 NM_019021 54494 Hs.715083 NM_019021 ENSG00000180425 C11orf71 URLC7 chromosome 11 open reading frame 71 protein-coding 239.5-9 chr13 86340373 86340632 + 1.33333 NA Intergenic L1M1|LINE|L1 -541083 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 213.501 chr10 56060590 56061020 + 1.33333 NA Intergenic L1PA5|LINE|L1 300454 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 340.333-7 chr16 65675898 65676321 + 1.33333 NA Intergenic MIRb|SINE|MIR -99809 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 260.333-8 chr16 76692089 76692380 + 1.33333 NA Intergenic L1MC1|LINE|L1 57236 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 187.333-37 chr2 147635745 147635975 + 1.33333 NA Intergenic L2b|LINE|L2 -208657 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 143.166-3 chr6 137106084 137106254 + 1.33333 NA Intergenic MLT1J1|LTR|ERVL-MaLR -60989 NM_001278723 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 206.833-24 chr5 133397767 133397982 + 1.33333 NA intron (NM_015082, intron 4 of 15) intron (NM_015082, intron 4 of 15) 29832 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 228-24 chr3 110353798 110354140 + 1.33333 NA Intergenic Intergenic 715990 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 148.166-3 chr2 187104702 187104851 + 1.33333 NA Intergenic Intergenic -255606 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 227.666-8 chrX 72722917 72723132 + 1.33333 NA Intergenic L1MC5|LINE|L1 -8718 NM_002637 5255 Hs.201379 NM_002637 ENSG00000067177 PHKA1 PHKA phosphorylase kinase regulatory subunit alpha 1 protein-coding 213.5-10 chr18 8607338 8607757 + 1.33333 NA Intergenic MamTip2|DNA|hAT-Tip100 -1898 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 143.5-14 chr12 38596887 38597074 + 1.33333 NA Intergenic Intergenic 280206 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 120.167-44 chr20 14318439 14318581 + 1.33333 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 19102 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 274.333 chr1 48087325 48087567 + 1.33333 NA Intergenic L1ME1|LINE|L1 -90061 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 135.333-80 chr8 31534691 31534826 + 1.33333 NA Intergenic MER50|LTR|ERV1 -104994 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 326.999 chr1 88568743 88569022 + 1.33333 NA intron (NR_110682, intron 2 of 3) intron (NR_110682, intron 2 of 3) -115262 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 288-14 chr6 62116078 62116529 + 1.33333 NA intron (NR_146874, intron 2 of 13) L1MA7|LINE|L1 169922 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 455.666 chr4 84756871 84757322 + 1.33333 NA exon (NM_014991, exon 33 of 68) exon (NM_014991, exon 33 of 68) 173969 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 468.666 chr7 53223503 53224198 + 1.33333 NA Intergenic Intergenic 188217 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 197.833-8 chr14 81167671 81167878 + 1.33333 NA Intergenic Intergenic 35060 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 134.166 chr3 142199227 142199388 + 1.33333 NA intron (NM_001039547, intron 4 of 15) intron (NM_001039547, intron 4 of 15) 26278 NM_001039547 256356 Hs.135904 NM_152776 ENSG00000175066 GK5 - glycerol kinase 5 protein-coding 293.167-3 chr17 63722032 63722495 + 1.33333 NA intron (NM_153335, intron 2 of 8) intron (NM_153335, intron 2 of 8) 19536 NR_156741 92335 Hs.514402 NM_153335 ENSG00000266173 STRADA LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk STE20 related adaptor alpha protein-coding 264-16 chr5 17442238 17442581 + 1.33333 NA TTS (NR_134275) TTS (NR_134275) -1601 NR_134270 102723526 NR_134270 ENSG00000249662 LINC02218 - long intergenic non-protein coding RNA 2218 ncRNA 402.833-4 chr8 114810993 114811349 + 1.33333 NA Intergenic AluJr|SINE|Alu 856842 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 464.666 chr11 32131338 32131992 + 1.33333 NA Intergenic Intergenic 12247 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 163.333-35 chr18 63922148 63922341 + 1.33333 NA intron (NM_005024, intron 5 of 7) intron (NM_005024, intron 5 of 7) 14286 NM_005024 5273 Hs.158339 NM_005024 ENSG00000242550 SERPINB10 PI-10|PI10 serpin family B member 10 protein-coding 280.166-3 chr3 104665602 104665962 + 1.33333 NA Intergenic THE1B-int|LTR|ERVL-MaLR -700931 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 210.334-2 chr12 12337910 12338307 + 1.33333 NA intron (NM_001363613, intron 4 of 4) MARNA|DNA|TcMar-Mariner 12134 NM_001363613 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 241.166-2 chr15 78222796 78223035 + 1.33333 NA intron (NM_015162, intron 1 of 13) L1ME2|LINE|L1 11650 NM_001199377 23205 Hs.655760 NM_015162 ENSG00000103740 ACSBG1 BG|BG1|BGM|GR-LACS|LPD acyl-CoA synthetase bubblegum family member 1 protein-coding 349.333 chr17 62063405 62063764 + 1.33333 NA intron (NM_005121, intron 1 of 29) intron (NM_005121, intron 1 of 29) 1694 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 288.999-2 chr13 26333680 26334087 + 1.33333 NA intron (NM_001318368, intron 1 of 12) intron (NM_001318368, intron 1 of 12) 79754 NM_001346501 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 179.666 chr3 11690140 11690309 + 1.33333 NA intron (NM_001284390, intron 2 of 6) HAL1ME|LINE|L1 30315 NM_014667 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 213.5-12 chr19 29703549 29703760 + 1.33333 NA intron (NM_001282930, intron 1 of 1) AluSx|SINE|Alu 11402 NM_001031726 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 221.5-29 chr5 152675432 152675673 + 1.33333 NA intron (NR_109877, intron 4 of 4) L1PREC2|LINE|L1 -270273 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 182.333-8 chr10 68125639 68125839 + 1.33333 NA intron (NR_045663, intron 2 of 17) intron (NR_045663, intron 2 of 17) 16251 NR_045663 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 283-4 chr11 10703579 10703979 + 1.33333 NA Intergenic Intergenic -9791 NM_130385 10335 Hs.501898 NM_130385 ENSG00000072952 MRVI1 IRAG|JAW1L murine retrovirus integration site 1 homolog protein-coding 144.666 chr19 51006210 51006329 + 1.33333 NA intron (NM_012315, intron 3 of 4) MER104|DNA|TcMar-Tc2 3323 NM_012315 284366 NM_012315 ENSG00000213022 KLK9 KLK-L3|KLKL3 kallikrein related peptidase 9 protein-coding 476.332 chr11 79449023 79449455 + 1.33333 NA Intergenic MER57A1|LTR|ERV1 -8209 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 198-25 chr18 63257384 63257656 + 1.33333 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 61860 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 211.333-38 chr4 144660331 144660580 + 1.33333 NA intron (NM_022475, intron 4 of 12) intron (NM_022475, intron 4 of 12) 14299 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 204-17 chr2 34186148 34186346 + 1.33333 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 119021 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 270.667-2 chr12 47711005 47711383 + 1.33333 NA intron (NM_001172440, intron 7 of 7) intron (NM_001172440, intron 7 of 7) -5133 NM_001146076 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 247.666-2 chr8 107001826 107002380 + 1.33333 NA Intergenic L1PA8|LINE|L1 -231859 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 234-32 chr5 104600947 104601224 + 1.33333 NA Intergenic L1MA4|LINE|L1 -498389 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 199.333-35 chr5 11093272 11093508 + 1.33333 NA intron (NM_001364128, intron 12 of 19) intron (NM_001364128, intron 12 of 19) -332156 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 157-15 chr11 5475584 5475757 + 1.33333 NA intron (NM_001005567, intron 1 of 4) L2b|LINE|L2 -13015 NM_001005163 390066 Hs.553734 NM_001005163 ENSG00000181609 OR52D1 OR11-43 olfactory receptor family 52 subfamily D member 1 protein-coding 253-10 chr15 62300261 62300665 + 1.33333 NA Intergenic L1PA13|LINE|L1 4271 NR_107034 102465869 NR_107034 ENSG00000277919 MIR8067 hsa-mir-8067 microRNA 8067 ncRNA 171.5-13 chr12 55665301 55665450 + 1.33333 NA Intergenic L1MA9|LINE|L1 -16361 NM_152637 196410 Hs.51483 NM_152637 ENSG00000170439 METTL7B ALDI methyltransferase like 7B protein-coding 127-67 chr3 99568537 99568657 + 1.33333 NA Intergenic Intergenic -69997 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 248-25 chr9 85182320 85182647 + 1.33333 NA Intergenic MIRc|SINE|MIR 476582 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 396.333 chr18 64961519 64961932 + 1.33333 NA Intergenic L2c|LINE|L2 -701670 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 151.666-2 chrX 40408052 40408221 + 1.33333 NA Intergenic MIRb|SINE|MIR 145219 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 135.833-68 chr7 104756118 104756289 + 1.33333 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 47889 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 233.333-32 chr4 33617051 33617340 + 1.33333 NA Intergenic MamRep137|DNA|TcMar-Tigger 422698 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 330-2 chr10 102299526 102299980 + 1.16667 NA intron (NM_001199378, intron 3 of 39) AluSp|SINE|Alu 54221 NM_004193 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 158.167-42 chr5 132305894 132306060 + 1.16667 NA intron (NM_003059, intron 1 of 9) L1MB7|LINE|L1 11583 NM_003059 6583 Hs.310591 NM_003059 ENSG00000197208 SLC22A4 DFNB60|OCTN1 solute carrier family 22 member 4 protein-coding 273.5-20 chr5 113987408 113987686 + 1.16667 NA Intergenic Intergenic -374523 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 361.167-5 chr21 31666475 31667132 + 1.16667 NA intron (NM_000454, intron 3 of 4) intron (NM_000454, intron 3 of 4) 7181 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 115-57 chr4 52796234 52796388 + 1.16667 NA intron (NR_040106, intron 3 of 4) L1MA7|LINE|L1 6317 NR_040106 152578 Hs.383806 NR_040106 ENSG00000250302 LINC01618 - long intergenic non-protein coding RNA 1618 ncRNA 184-50 chr5 90018767 90019104 + 1.16667 NA Intergenic Intergenic -2215 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 214-46 chr7 27032053 27032369 + 1.16667 NA Intergenic Intergenic 63789 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 272-4 chr15 45536140 45536387 + 1.16667 NA promoter-TSS (NR_145777) promoter-TSS (NR_145777) -988 NR_145777 109617005 NR_145777 ENSG00000207516 SNORA41B - small nucleolar RNA, H/ACA box 41B snoRNA 222.667-10 chr14 75952972 75953244 + 1.16667 NA intron (NM_015072, intron 31 of 31) L1MEd|LINE|L1 28887 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 240.501 chr11 82484002 82484441 + 1.16667 NA Intergenic L1MB8|LINE|L1 -80308 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 129.834-6 chr5 72101746 72102182 + 1.16667 NA Intergenic L2|LINE|L2 -5511 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 138.667-96 chr7 72030375 72030595 + 1.16667 NA intron (NM_001363460, intron 3 of 5) intron (NM_001363460, intron 3 of 5) 306906 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 215.5-21 chr2 82057050 82057310 + 1.16667 NA Intergenic Intergenic -590234 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 356 chr5 32357366 32357902 + 1.16667 NA intron (NM_016107, intron 19 of 19) intron (NM_016107, intron 19 of 19) 36841 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 129.833-6 chr10 49377309 49377572 + 1.16667 NA intron (NM_001276451, intron 6 of 6) intron (NM_001276451, intron 6 of 6) 18649 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 240.333-2 chr1 101883737 101884117 + 1.16667 NA intron (NR_033424, intron 1 of 1) intron (NR_033424, intron 1 of 1) 11915 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 168.667-17 chr14 44133485 44133837 + 1.16667 NA Intergenic Intergenic 373622 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 129.5-88 chr8 120010606 120010840 + 1.16667 NA intron (NM_022783, intron 8 of 8) L1ME4a|LINE|L1 -114379 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 285.334-2 chr1 101213831 101214253 + 1.16667 NA Intergenic L1MC1|LINE|L1 22486 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 261-11 chr18 61917754 61918226 + 1.16667 NA Intergenic Intergenic -24983 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 183.834-10 chr9 16630613 16630879 + 1.16667 NA intron (NM_001317940, intron 2 of 5) AluSp|SINE|Alu -96068 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 142.5-29 chr16 71517363 71517584 + 1.16667 NA intron (NR_135171, intron 2 of 2) intron (NR_135171, intron 2 of 2) 3662 NR_135171 105371335 Hs.564879 NR_135171 ENSG00000260520 LOC105371335 - uncharacterized LOC105371335 ncRNA 251.501 chr7 64929568 64929852 + 1.16667 NA non-coding (NR_003099, exon 5 of 5) non-coding (NR_003099, exon 5 of 5) 26468 NM_021148 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 234.834-3 chr10 93520751 93520973 + 1.16667 NA intron (NM_018131, intron 8 of 8) intron (NM_018131, intron 8 of 8) 24250 NM_001127182 55165 Hs.14559 NM_018131 ENSG00000138180 CEP55 C10orf3|CT111|MARCH|URCC6 centrosomal protein 55 protein-coding 383.5-3 chr6 123788992 123789531 + 1.16667 NA Intergenic L2|LINE|L2 -14585 NM_153355 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 290.167-13 chr7 50438083 50438655 + 1.16667 NA 3' UTR (NM_001346564, exon 4 of 4) 3' UTR (NM_001346564, exon 4 of 4) 11981 NM_001287494 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 353-2 chr3 181810010 181810490 + 1.16667 NA Intergenic Intergenic 98325 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 283-10 chr8 134781909 134782497 + 1.16667 NA Intergenic Intergenic 18404 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 132.167-31 chr18 59784558 59784756 + 1.16667 NA Intergenic Intergenic -87234 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 121.167-62 chr5 5687804 5688026 + 1.16667 NA Intergenic L1MA8|LINE|L1 265238 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 197.167-59 chrX 46730713 46730971 + 1.16667 NA intron (NM_001257291, intron 1 of 16) L1ME4b|LINE|L1 28276 NM_001257291 84679 Hs.91389 NM_032591 ENSG00000065923 SLC9A7 MRX108|NHE-7|NHE7|SLC9A6 solute carrier family 9 member A7 protein-coding 271.167-3 chr1 186712552 186712877 + 1.16667 NA Intergenic MLT1C|LTR|ERVL-MaLR 32060 NR_125801 103752588 Hs.441636 NR_125801 ENSG00000273129 PACERR PACER|PTGS2-AS1|PTGS2AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 194.5-40 chr6 165351366 165351693 + 1.16667 NA intron (NM_006661, intron 19 of 22) intron (NM_006661, intron 19 of 22) -41924 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 344.834-4 chr8 114761676 114762055 + 1.16667 NA Intergenic Intergenic 906148 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 269-6 chr15 64552565 64552930 + 1.16667 NA intron (NM_015042, intron 1 of 8) AluJr|SINE|Alu 53327 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 218.834-3 chr14 72659758 72660005 + 1.16667 NA intron (NM_001280542, intron 8 of 10) L1MB3|LINE|L1 143061 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 156.167-46 chr4 152384115 152384337 + 1.16667 NA intron (NM_033632, intron 2 of 11) L1MB3|LINE|L1 -1697 NM_001013415 55294 Hs.561245 NM_018315 ENSG00000109670 FBXW7 AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 F-box and WD repeat domain containing 7 protein-coding 372-3 chr3 104612100 104612742 + 1.16667 NA Intergenic Intergenic -754292 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 206.167-12 chr2 140318839 140319055 + 1.16667 NA intron (NM_018557, intron 82 of 90) intron (NM_018557, intron 82 of 90) 267738 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 239.5-28 chr8 130766783 130767126 + 1.16667 NA Intergenic THE1B|LTR|ERVL-MaLR 273955 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 280.167-2 chr15 99373917 99374245 + 1.16667 NA intron (NR_135755, intron 8 of 8) L1MD|LINE|L1 116556 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 279.334-6 chr3 33415062 33415529 + 1.16667 NA intron (NM_001128160, intron 3 of 14) intron (NM_001128160, intron 3 of 14) 25083 NM_001128160 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 224.167-26 chr7 37516239 37516477 + 1.16667 NA Intergenic Intergenic -67032 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 143.167-50 chr3 116976386 116976667 + 1.16667 NA Intergenic L1ME3A|LINE|L1 55095 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 397.167-3 chr2 77382870 77383643 + 1.16667 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 139120 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 231.833-7 chr18 58326213 58326493 + 1.16667 NA intron (NM_001144965, intron 9 of 30) intron (NM_001144965, intron 9 of 30) 104782 NM_001144966 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 213.667-16 chr2 69857427 69857687 + 1.16667 NA intron (NM_178439, intron 9 of 13) intron (NM_178439, intron 9 of 13) 27897 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 179.667-47 chr6 164413553 164414009 + 1.16667 NA Intergenic Intergenic 408282 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 214.833-2 chr10 108423550 108423846 + 1.16667 NA Intergenic L1MA8|LINE|L1 -354405 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 192.5-42 chr5 41557038 41557296 + 1.16667 NA Intergenic L1MA7|LINE|L1 -46566 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 120.167-63 chr5 65914177 65914357 + 1.16667 NA Intergenic Intergenic -12287 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 135.5-43 chr2 71195214 71195570 + 1.16667 NA intron (NM_020459, intron 2 of 3) L1PA14|LINE|L1 31711 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 329.667 chr12 96050702 96051111 + 1.16667 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -7386 NM_001256644 4048 Hs.524648 NM_000895 ENSG00000111144 LTA4H - leukotriene A4 hydrolase protein-coding 128.334-4 chr16 61183999 61184172 + 1.16667 NA Intergenic Intergenic -128319 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 265.334-9 chr15 72316443 72316878 + 1.16667 NA intron (NM_052840, intron 1 of 12) intron (NM_052840, intron 1 of 12) 3286 NM_001172684 60677 Hs.348342 NM_052840 ENSG00000140488 CELF6 BRUNOL6 CUGBP Elav-like family member 6 protein-coding 302.501-3 chr7 49293688 49294194 + 1.16667 NA Intergenic Intergenic 369394 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 165.5-31 chr19 29908146 29908328 + 1.16667 NA Intergenic Intergenic -15420 NM_001252641 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 263.333-8 chr14 20558847 20559251 + 1.16667 NA intron (NM_001110361, intron 3 of 4) L1M5|LINE|L1 1882 NM_001110361 390443 Hs.533972 NM_001001673 ENSG00000188655 RNASE9 HEL128|RAK1|h461 ribonuclease A family member 9 (inactive) protein-coding 196.333-12 chr15 81630222 81630412 + 1.16667 NA Intergenic Intergenic -256104 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 121.167-46 chr2 197127041 197127191 + 1.16667 NA intron (NM_153697, intron 4 of 9) intron (NM_153697, intron 4 of 9) -70875 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 369.167-2 chr2 52370447 52370787 + 1.16667 NA promoter-TSS (NR_135239) promoter-TSS (NR_135239) -31 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 194.833-21 chr4 107143243 107143562 + 1.16667 NA Intergenic MER1A|DNA|hAT-Charlie -107089 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 154-34 chr18 64278704 64278911 + 1.16667 NA intron (NR_033881, intron 3 of 9) L1M1|LINE|L1 -18752 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 127.667-58 chr3 99875338 99875489 + 1.16667 NA intron (NM_001370247, intron 1 of 2) intron (NM_001370247, intron 1 of 2) 760 NM_001370247 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 153.334-3 chr10 50363517 50363685 + 1.16667 NA intron (NM_147156, intron 6 of 10) HAL1|LINE|L1 -114991 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 131.334-8 chr7 118341556 118341707 + 1.16667 NA Intergenic Zaphod|DNA|hAT-Tip100 116927 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 288.334-3 chr22 50352639 50352940 + 1.16667 NA intron (NM_001242899, intron 1 of 22) AluJb|SINE|Alu 9462 NM_001351646 9701 Hs.449098 NM_014678 ENSG00000100239 PPP6R2 KIAA0685|PP6R2|SAP190|SAPS2 protein phosphatase 6 regulatory subunit 2 protein-coding 216.167-33 chr9 112264974 112265216 + 1.16667 NA intron (NM_001244896, intron 3 of 12) L1M5|LINE|L1 67931 NM_001244898 9991 Hs.269988 NM_005156 ENSG00000119314 PTBP3 ROD1 polypyrimidine tract binding protein 3 protein-coding 189.5-32 chr2 225638835 225639013 + 1.16667 NA intron (NM_001371273, intron 6 of 7) LTR78|LTR|ERV1 238038 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 412.5 chr18 3055099 3055696 + 1.16667 NA Intergenic Intergenic -43450 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 304.333-7 chr2 230481176 230481569 + 1.16667 NA intron (NM_001080391, intron 17 of 28) L2a|LINE|L2 64616 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 303.501 chr4 119157228 119157512 + 1.16667 NA intron (NM_016599, intron 3 of 5) intron (NM_016599, intron 3 of 5) 21586 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 401 chr14 34435815 34436527 + 1.16667 NA intron (NM_138288, intron 1 of 1) intron (NM_138288, intron 1 of 1) 26069 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 219.333-7 chr11 28083481 28083820 + 1.16667 NA intron (NM_031217, intron 7 of 16) MIRc|SINE|MIR 24506 NM_031217 81930 Hs.301052 NM_031217 ENSG00000121621 KIF18A MS-KIF18A|PPP1R99 kinesin family member 18A protein-coding 167-42 chr5 4481819 4482016 + 1.16667 NA Intergenic Intergenic -291564 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 217.834 chr10 15324910 15325225 + 1.16667 NA intron (NM_001010924, intron 1 of 7) intron (NM_001010924, intron 1 of 7) 46222 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 158.5-24 chr15 46983770 46984227 + 1.16667 NA Intergenic L1PREC2|LINE|L1 -200091 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 298.334 chr22 29701297 29701589 + 1.16667 NA Intergenic MIR|SINE|MIR -18560 NM_182527 164633 Hs.643608 NM_182527 ENSG00000100314 CABP7 CALN2 calcium binding protein 7 protein-coding 239.167-20 chr8 25444037 25444434 + 1.16667 NA intron (NM_017634, intron 3 of 11) intron (NM_017634, intron 3 of 11) 14198 NM_017634 54793 Hs.72071 NM_017634 ENSG00000104756 KCTD9 BTBD27 potassium channel tetramerization domain containing 9 protein-coding 238.501 chr4 116931260 116931472 + 1.16667 NA Intergenic Intergenic 154210 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 260.334-7 chr9 80604211 80604551 + 1.16667 NA Intergenic Intergenic 629358 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 177-20 chr16 1721559 1721948 + 1.16667 NA intron (NM_001040439, intron 1 of 30) intron (NM_001040439, intron 1 of 30) -13232 NR_036138 100423012 NR_036138 ENSG00000265820 MIR3177 mir-3177 microRNA 3177 ncRNA 126.167-50 chr21 24788336 24788544 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -52110 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 310.833-8 chr8 103667689 103668203 + 1.16667 NA intron (NM_001348488, intron 3 of 25) MER57A-int|LTR|ERV1 -151274 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 338-5 chr17 61528527 61529080 + 1.16667 NA Intergenic AluSg7|SINE|Alu 62416 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 381.167-4 chr9 100248619 100249235 + 1.16667 NA intron (NR_134606, intron 8 of 16) AluJo|SINE|Alu 103644 NM_001161584 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 157.167-37 chr22 26839242 26839390 + 1.16667 NA Intergenic Intergenic -20895 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 137.334-3 chr15 56621883 56622037 + 1.16667 NA Intergenic MER99|DNA|hAT? 112126 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 143.5-6 chr10 119532937 119533224 + 1.16667 NA intron (NM_001005339, intron 1 of 4) AluSg|SINE|Alu 3453 NM_002925 6001 Hs.501200 NM_002925 ENSG00000148908 RGS10 - regulator of G protein signaling 10 protein-coding 133.834-5 chr2 107540381 107540573 + 1.16667 NA intron (NR_146968, intron 2 of 2) intron (NR_146968, intron 2 of 2) 11058 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 355.5-2 chr18 67066390 67066733 + 1.16667 NA Intergenic L1M4|LINE|L1 -15023 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 247.167-18 chr4 161793990 161794333 + 1.16667 NA intron (NM_001128428, intron 4 of 14) MER5B|DNA|hAT-Charlie -228572 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 186.834-5 chr4 62660679 62660935 + 1.16667 NA Intergenic Intergenic -499042 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 141-18 chr12 54713285 54713523 + 1.16667 NA Intergenic L2|LINE|L2 -65039 NM_053283 117159 Hs.350570 NM_053283 ENSG00000161634 DCD AIDD|DCD-1|DSEP|HCAP|PIF dermcidin protein-coding 181.5-53 chr6 140849005 140849231 + 1.16667 NA Intergenic Intergenic 165304 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 264.834 chr1 118006274 118006525 + 1.16667 NA intron (NM_206996, intron 31 of 48) L1MB7|LINE|L1 76660 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 248.667-21 chr7 105792114 105792509 + 1.16667 NA intron (NM_152749, intron 2 of 3) intron (NM_152749, intron 2 of 3) 84274 NM_020725 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 206.167-4 chr16 56383329 56383611 + 1.16667 NA intron (NM_001144, intron 10 of 13) L2a|LINE|L2 41519 NM_001323511 267 Hs.295137 NM_001144 ENSG00000159461 AMFR GP78|RNF45 autocrine motility factor receptor protein-coding 245.667-7 chr12 78115276 78115638 + 1.16667 NA intron (NM_001024383, intron 12 of 39) Charlie7|DNA|hAT-Charlie 244289 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 130.834-5 chr6 61218044 61218224 + 1.16667 NA Intergenic MIR|SINE|MIR -355996 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 141.667-43 chr18 61648112 61648354 + 1.16667 NA Intergenic Intergenic -99943 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 234.667-35 chr8 123338308 123338561 + 1.16667 NA intron (NM_014109, intron 20 of 27) intron (NM_014109, intron 20 of 27) -9600 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 232-35 chr8 128428527 128428809 + 1.16667 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 136011 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 173.334-6 chr9 107181260 107181500 + 1.16667 NA Intergenic Intergenic -78392 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 199.334-6 chr3 83035750 83035998 + 1.16667 NA Intergenic MER52D|LTR|ERV1 1049732 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 279-5 chr14 87966396 87966779 + 1.16667 NA intron (NM_000153, intron 8 of 16) intron (NM_000153, intron 8 of 16) 26595 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 128.334 chr1 87096994 87097259 + 1.16667 NA intron (NM_012262, intron 4 of 6) intron (NM_012262, intron 4 of 6) -32639 NR_026989 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 157.667-17 chr12 108258071 108258290 + 1.16667 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat 62482 NM_001142345 1240 Hs.197143 NM_004072 ENSG00000174600 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemerin chemokine-like receptor 1 protein-coding 142.5-33 chr18 70458993 70459127 + 1.16667 NA Intergenic L2a|LINE|L2 -74469 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 301.334-5 chr4 39965275 39965584 + 1.16667 NA intron (NM_001100399, intron 2 of 32) MLT1H1|LTR|ERVL-MaLR 12482 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 185.167-39 chr7 80998930 80999164 + 1.16667 NA Intergenic Intergenic -76658 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 246.833-8 chr2 42570671 42571006 + 1.16667 NA intron (NM_001330443, intron 2 of 16) AluSp|SINE|Alu 2206 NM_001330444 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 217.5-24 chr2 70247001 70247254 + 1.16667 NA intron (NM_001351511, intron 1 of 12) intron (NM_001351511, intron 1 of 12) 1501 NM_001351521 7072 Hs.413123 NM_022037 ENSG00000116001 TIA1 TIA-1|WDM TIA1 cytotoxic granule associated RNA binding protein protein-coding 328.667-9 chr3 89515459 89515917 + 1.16667 NA Intergenic Intergenic 408067 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 208.333-20 chr2 9315665 9315939 + 1.16667 NA intron (NM_003887, intron 3 of 27) intron (NM_003887, intron 3 of 27) 106789 NM_001319068 9270 Hs.467662 NM_004763 ENSG00000119185 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin subunit beta 1 binding protein 1 protein-coding 265-17 chr6 159468420 159468767 + 1.16667 NA Intergenic Intergenic 85062 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 180.5-40 chr4 146329921 146330163 + 1.16667 NA intron (NM_001317816, intron 4 of 10) intron (NM_001317816, intron 4 of 10) -78541 NR_107003 102465837 NR_107003 ENSG00000278438 MIR7849 hsa-mir-7849 microRNA 7849 ncRNA 178.834 chr2 101015257 101015495 + 1.16667 NA intron (NM_001102426, intron 17 of 19) Tigger3|DNA|TcMar-Tigger 13087 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 117-8 chr1 160878557 160878687 + 1.16667 NA intron (NM_017625, intron 7 of 7) AluJb|SINE|Alu 6558 NM_017625 55600 Hs.50813 NM_017625 ENSG00000179914 ITLN1 HL-1|HL1|INTL|ITLN|LFR|hIntL|omentin intelectin 1 protein-coding 217.667-29 chr3 88390525 88390832 + 1.16667 NA intron (NM_001368167, intron 2 of 2) intron (NM_001368167, intron 2 of 2) 52222 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 126.167-32 chr17 50972385 50972514 + 1.16667 NA intron (NM_001130527, intron 28 of 29) intron (NM_001130527, intron 28 of 29) 74429 NM_001251971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 292.5-16 chr8 125848295 125848687 + 1.16667 NA Intergenic L2a|LINE|L2 102706 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 240.833-21 chr4 89321191 89321765 + 1.16667 NA Intergenic Intergenic -13678 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 128.167-90 chr9 24097165 24097543 + 1.16667 NA Intergenic Intergenic -246753 NM_001351456 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 121.334 chr7 84825485 84825702 + 1.16667 NA Intergenic L1MEf|LINE|L1 293117 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 115.333-84 chr5 62185157 62185339 + 1.16667 NA Intergenic (ATAC)n|Simple_repeat|Simple_repeat -120914 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 279.001 chr1 109042807 109043058 + 1.16667 NA promoter-TSS (NM_001142550) promoter-TSS (NM_001142550) -704 NM_014969 22911 Hs.570055 NM_014969 ENSG00000085433 WDR47 - WD repeat domain 47 protein-coding 246-2 chr12 22750746 22751044 + 1.16667 NA Intergenic Intergenic 125724 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 325.834 chr10 99047170 99047764 + 1.16667 NA intron (NM_021828, intron 3 of 11) L1PA16|LINE|L1 -122899 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 189.5-30 chr2 154622441 154622679 + 1.16667 NA Intergenic Intergenic -76021 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 227-24 chr6 106057057 106057490 + 1.16667 NA Intergenic Intergenic -29063 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 251.834-3 chr1 236591596 236592225 + 1.16667 NA intron (NM_018072, intron 11 of 44) intron (NM_018072, intron 11 of 44) 12606 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 219.334-2 chr1 165502412 165502672 + 1.16667 NA intron (NR_026744, intron 4 of 6) intron (NR_026744, intron 4 of 6) -41699 NM_001005214 440699 Hs.664975 NM_001005214 ENSG00000162763 LRRC52 - leucine rich repeat containing 52 protein-coding 272.167-17 chr16 75644076 75644417 + 1.16667 NA intron (NM_005548, intron 1 of 13) intron (NM_005548, intron 1 of 13) 3441 NM_005548 3735 Hs.3100 NM_005548 ENSG00000065427 KARS CMTRIB|DFNB89|KARS1|KARS2|KRS lysyl-tRNA synthetase protein-coding 223.833-19 chr3 8384203 8384532 + 1.16667 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 117291 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 193.667-20 chr16 73571084 73571648 + 1.16667 NA Intergenic Intergenic 184561 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 226.167-16 chr2 196957893 196958214 + 1.16667 NA Intergenic Intergenic -31346 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 281.167-13 chr8 113484001 113484337 + 1.16667 NA Intergenic L1MA2|LINE|L1 -47230 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 241.667-9 chr12 110590361 110590586 + 1.16667 NA Intergenic AluSx1|SINE|Alu -7155 NR_138550 160760 Hs.13854 NM_139283 ENSG00000196850 PPTC7 TA-PP2C|TAPP2C PTC7 protein phosphatase homolog protein-coding 178.667-30 chr2 150060109 150060394 + 1.16667 NA Intergenic Intergenic 196756 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 181.833-39 chr5 17822925 17823376 + 1.16667 NA intron (NR_134286, intron 2 of 7) (TA)n|Simple_repeat|Simple_repeat 15876 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 203.833 chr1 174839774 174840137 + 1.16667 NA intron (NM_001366446, intron 19 of 25) intron (NM_001366446, intron 19 of 25) -34431 NM_001243763 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 282.667-6 chr11 77651898 77652400 + 1.16667 NA Intergenic L1MB3|LINE|L1 -14343 NM_001311199 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 234.667-9 chr11 121720772 121721139 + 1.16667 NA Intergenic L2a|LINE|L2 268641 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 321.167-3 chr17 53067707 53068175 + 1.16667 NA Intergenic Intergenic 82436 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 228.5-32 chr7 42761970 42762263 + 1.16667 NA Intergenic Intergenic -55669 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 181.833-54 chr9 27444490 27444714 + 1.16667 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -79712 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 342-9 chr7 126136424 126137172 + 1.16667 NA Intergenic Intergenic -872507 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 135.667-113 chr9 25804512 25804700 + 1.16667 NA intron (NR_121604, intron 5 of 5) MER34C2|LTR|ERV1 24550 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 269.334-7 chr3 27490364 27490883 + 1.16667 NA Intergenic Intergenic -6239 NM_001321106 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 122.5-65 chr4 31521787 31522101 + 1.16667 NA intron (NR_149121, intron 1 of 2) L1MC3|LINE|L1 15400 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 261.001-2 chr2 122104295 122104640 + 1.16667 NA Intergenic MSTB-int|LTR|ERVL-MaLR 348816 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 153.667-87 chrX 43318253 43318514 + 1.16667 NA Intergenic Intergenic 141389 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 240.5-15 chr4 98678571 98678865 + 1.16667 NA Intergenic L1PREC2|LINE|L1 19816 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 183.334 chr1 42605414 42605571 + 1.16667 NA intron (NM_001080850, intron 10 of 16) AluJb|SINE|Alu -52931 NM_006347 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 301.167-2 chr11 38443205 38443545 + 1.16667 NA Intergenic Intergenic 202981 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 162.5-7 chr10 102090613 102090886 + 1.16667 NA Intergenic MIR|SINE|MIR 24253 NM_003893 8861 Hs.454418 NM_003893 ENSG00000198728 LDB1 CLIM-2|CLIM2|LDB-1|NLI LIM domain binding 1 protein-coding 126.5-13 chr12 8043986 8044172 + 1.16667 NA exon (NM_018416, exon 5 of 11) exon (NM_018416, exon 5 of 11) 11363 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 164-17 chr14 67015783 67016114 + 1.16667 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -173492 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 323.667 chr1 40679874 40680331 + 1.16667 NA Intergenic FLAM_C|SINE|Alu -11602 NM_014223 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y subunit gamma protein-coding 148.167-58 chr5 6618401 6618607 + 1.16667 NA intron (NM_017755, intron 7 of 18) intron (NM_017755, intron 7 of 18) 14540 NR_037947 54888 Hs.481526 NM_017755 ENSG00000037474 NSUN2 MISU|MRT5|SAKI|TRM4 NOP2/Sun RNA methyltransferase 2 protein-coding 253-25 chr8 121541192 121541496 + 1.16667 NA Intergenic L1MC2|LINE|L1 -98002 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 242.501 chr17 66282925 66283224 + 1.16667 NA Intergenic Intergenic -19539 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 410.001 chr2 19575509 19576133 + 1.16667 NA Intergenic Intergenic -217198 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 340.667-5 chr3 37662781 37663251 + 1.16667 NA intron (NM_002207, intron 17 of 27) intron (NM_002207, intron 17 of 27) 198764 NR_110532 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 341.334-4 chr3 98361913 98362502 + 1.16667 NA Intergenic Intergenic 8353 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 254-25 chr5 154942370 154942741 + 1.16667 NA intron (NM_001014990, intron 2 of 5) L2c|LINE|L2 1482 NM_001014990 29093 Hs.483924 NM_014180 ENSG00000082515 MRPL22 HSPC158|L22mt|MRP-L22|MRP-L25|RPML25 mitochondrial ribosomal protein L22 protein-coding 208-43 chr8 134017469 134017728 + 1.16667 NA Intergenic Intergenic 131102 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 270.001-2 chr21 33696069 33696501 + 1.16667 NA intron (NM_001001132, intron 1 of 29) intron (NM_001001132, intron 1 of 29) 53784 NM_001331011 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 139-69 chr7 19959853 19959984 + 1.16667 NA intron (NR_110114, intron 5 of 5) MSTA|LTR|ERVL-MaLR 180508 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 264.667-5 chr10 77467699 77468080 + 1.16667 NA intron (NM_001271519, intron 1 of 28) MamRep4096|DNA|hAT-Tip100 117017 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 150.667-93 chr8 119028739 119029047 + 1.16667 NA intron (NM_001324095, intron 1 of 7) L2b|LINE|L2 -38354 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 179-4 chr10 24073445 24073687 + 1.16667 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -135225 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 256.834-4 chr6 72398660 72398881 + 1.16667 NA intron (NM_001350433, intron 24 of 25) intron (NM_001350433, intron 24 of 25) 32024 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 396-2 chr14 78683555 78684091 + 1.16667 NA intron (NR_073547, intron 6 of 20) intron (NR_073547, intron 6 of 20) 280104 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 304.001-3 chr3 150414743 150415348 + 1.16667 NA intron (NM_001303264, intron 1 of 2) intron (NM_001303264, intron 1 of 2) 6747 NM_001303264 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 295.834-5 chr4 65185240 65185570 + 1.16667 NA Intergenic Intergenic -180905 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 174.833-26 chr20 46580378 46580628 + 1.16667 NA intron (NM_001193340, intron 9 of 12) (AT)n|Simple_repeat|Simple_repeat -29849 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 429.167 chr12 1708886 1709455 + 1.16667 NA intron (NM_024551, intron 1 of 7).2 L1ME1|LINE|L1 18100 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 130-4 chr1 76299621 76299832 + 1.16667 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 224980 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 275.667-19 chr4 128102184 128102565 + 1.16667 NA intron (NR_146772, intron 8 of 19) MIR|SINE|MIR 41062 NM_001278604 55132 Hs.654971 NM_018078 ENSG00000138709 LARP1B LARP2 La ribonucleoprotein domain family member 1B protein-coding 220.334-3 chr16 80689590 80689788 + 1.16667 NA intron (NM_152342, intron 1 of 6) intron (NM_152342, intron 1 of 6) 114909 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 280.667-20 chr5 6498441 6498911 + 1.16667 NA Intergenic Intergenic 49817 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 131.833-53 chr4 109523514 109523739 + 1.16667 NA intron (NM_001300813, intron 15 of 24) intron (NM_001300813, intron 15 of 24) 34928 NR_030302 693161 NR_030302 ENSG00000207988 MIR576 MIRN576|hsa-mir-576 microRNA 576 ncRNA 195.334-8 chr4 121971217 121971585 + 1.16667 NA Intergenic Intergenic -19341 NM_001130698 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 144.333-6 chr1 151945192 151945377 + 1.16667 NA Intergenic Intergenic -35773 NM_053055 117145 Hs.164070 NM_053055 ENSG00000159445 THEM4 CTMP thioesterase superfamily member 4 protein-coding 206.667-16 chr13 80776273 80776525 + 1.16667 NA Intergenic MIRb|SINE|MIR -241992 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 141.167-10 chr10 67034351 67034547 + 1.16667 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 22183 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 170.5-61 chr6 70894731 70894989 + 1.16667 NA intron (NM_080742, intron 1 of 3) intron (NM_080742, intron 1 of 3) 62200 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 116.833-68 chrX 155540786 155540966 + 1.16667 NA intron (NM_018196, intron 2 of 7) L1M4c|LINE|L1 -71689 NM_001304990 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 361.667 chr12 41056533 41056930 + 1.16667 NA intron (NM_001843, intron 23 of 23) intron (NM_001843, intron 23 of 23) -131589 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 154.834-8 chr8 118985710 118985896 + 1.16667 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 33540 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 120.167-73 chr7 17545612 17545719 + 1.16667 NA intron (NR_110013, intron 1 of 3) intron (NR_110013, intron 1 of 3) 13244 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 142-2 chr1 58121305 58121559 + 1.16667 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 129071 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 143-85 chr9 80820846 80821012 + 1.16667 NA Intergenic Intergenic 845906 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 116.334-3 chr9 33881202 33881317 + 1.16667 NA intron (NM_017811, intron 1 of 4) L1MC3|LINE|L1 53105 NM_001282530 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 213.167-4 chr11 8027700 8028270 + 1.16667 NA Intergenic L1MB4|LINE|L1 -10648 NM_003320 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 215.667-24 chr2 121957923 121958133 + 1.16667 NA Intergenic L2b|LINE|L2 202377 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 227.333-20 chr2 102535290 102535641 + 1.16667 NA Intergenic Intergenic 62239 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 265.5 chr10 66084926 66085398 + 1.16667 NA intron (NM_001127384, intron 14 of 17) intron (NM_001127384, intron 14 of 17) 513737 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 224.5-24 chr8 127519757 127520042 + 1.16667 NA Intergenic L1MD1|LINE|L1 -37760 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 201-26 chr3 3519679 3519868 + 1.16667 NA Intergenic Intergenic -279658 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 135.5-85 chr9 5031424 5031620 + 1.16667 NA intron (NM_004972, intron 4 of 24) L1M5|LINE|L1 -10171 NM_001322204 3717 Hs.656213 NM_004972 ENSG00000096968 JAK2 JTK10|THCYT3 Janus kinase 2 protein-coding 294-6 chr2 191724886 191725458 + 1.16667 NA Intergenic Intergenic 34991 NR_131917 105747689 Hs.104972 NR_131917 LOC105747689 - uncharacterized LOC105747689 ncRNA 284.501 chr1 71426632 71427032 + 1.16667 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 345508 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 114.333-120 chr8 101603043 101603174 + 1.16667 NA intron (NM_024915, intron 8 of 15) MARNA|DNA|TcMar-Mariner 110669 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 192.334-6 chr4 62872080 62872393 + 1.16667 NA Intergenic ERVL-B4-int|LTR|ERVL -710471 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 264.167-21 chr6 135476775 135477050 + 1.16667 NA intron (NM_017651, intron 4 of 27) L1MD3|LINE|L1 20828 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 335.334-2 chr3 193749135 193749661 + 1.16667 NA Intergenic MSTA|LTR|ERVL-MaLR 94611 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 285.334 chr1 71495278 71495718 + 1.16667 NA intron (NM_173808, intron 6 of 6) AluSz|SINE|Alu 341514 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 216-23 chr3 145525261 145525546 + 1.16667 NA Intergenic L1M5|LINE|L1 543782 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 215.334 chr14 60459575 60459770 + 1.16667 NA intron (NM_174978, intron 13 of 17) L1ME3B|LINE|L1 26391 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 175.334-9 chr5 30330944 30331191 + 1.16667 NA Intergenic Intergenic 450507 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 448.5-3 chr7 14480834 14481419 + 1.16667 NA intron (NM_001350717, intron 19 of 24) BLACKJACK|DNA|hAT-Blackjack 360324 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 251.667-3 chr13 59242698 59243264 + 1.16667 NA Intergenic X6B_LINE|LINE|CR1 -769737 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 138.667-22 chr12 92801283 92801447 + 1.16667 NA intron (NM_003566, intron 20 of 28) intron (NM_003566, intron 20 of 28) 64876 NM_001004330 440107 Hs.591013 NM_001004330 ENSG00000187510 PLEKHG7 - pleckstrin homology and RhoGEF domain containing G7 protein-coding 351.667-2 chr10 46516527 46517043 + 1.16667 NA Intergenic Intergenic 39286 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 168-52 chr5 21236843 21237031 + 1.16667 NA Intergenic Intergenic -222543 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 181.834-6 chr5 66965764 66965954 + 1.16667 NA intron (NM_001290226, intron 1 of 26) L2|LINE|L2 6786 NM_001290226 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 223.834-5 chr2 223532354 223532633 + 1.16667 NA Intergenic Intergenic 69868 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 166.667-11 chr12 18860344 18860521 + 1.16667 NA Intergenic Intergenic 122313 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 159.834-4 chr4 107251018 107251184 + 1.16667 NA Intergenic Intergenic -214788 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 117.167-92 chr8 63764132 63764310 + 1.16667 NA Intergenic L1MD1|LINE|L1 -5209 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 121.333-116 chr9 32543284 32543463 + 1.16667 NA exon (NM_005802, exon 3 of 3) exon (NM_005802, exon 3 of 3) -7771 NM_001349118 100129250 Hs.664395 NM_001349118 ENSG00000235453 SMIM27 C9orf133|TOPORS-AS1 small integral membrane protein 27 protein-coding 156-97 chrX 78431213 78431380 + 1.16667 NA Intergenic Intergenic -103605 NM_001282186 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 205.5-38 chr6 65466169 65466456 + 1.16667 NA intron (NM_198283, intron 4 of 9) intron (NM_198283, intron 4 of 9) 113492 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 155.5-43 chr4 141223942 141224115 + 1.16667 NA intron (NM_014487, intron 2 of 9) intron (NM_014487, intron 2 of 9) 3133 NM_001292002 27309 Hs.120766 NM_014487 ENSG00000109445 ZNF330 HSA6591|NOA36 zinc finger protein 330 protein-coding 155.333-83 chr5 113263291 113263586 + 1.16667 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 31500 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 237.667-18 chr8 14470826 14471263 + 1.16667 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 382466 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 435.834 chr10 64875748 64876421 + 1.16667 NA Intergenic Intergenic 48434 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 341.501-2 chr11 107167635 107168003 + 1.16667 NA Intergenic L1MEf|LINE|L1 -149343 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 338.334-2 chr16 50094365 50094817 + 1.16667 NA intron (NR_138092, intron 12 of 15) (GTTT)n|Simple_repeat|Simple_repeat 28621 NM_001329731 55027 Hs.733027 NM_017939 ENSG00000155393 HEATR3 SYO1 HEAT repeat containing 3 protein-coding 165-41 chr5 12305731 12306002 + 1.16667 NA Intergenic L1MA5|LINE|L1 -268991 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 242.834-6 chr7 78309602 78309858 + 1.16667 NA intron (NM_001301128, intron 9 of 20) MIRc|SINE|MIR -37512 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 214.334-5 chr9 98148935 98149184 + 1.16667 NA intron (NM_003389, intron 2 of 11) L1MD1|LINE|L1 23833 NM_003389 7464 Hs.113094 NM_003389 ENSG00000106789 CORO2A CLIPINB|IR10|WDR2 coronin 2A protein-coding 202.501 chr2 53319974 53320157 + 1.16667 NA Intergenic Intergenic -447718 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 284.834-4 chr2 180990047 180990488 + 1.16667 NA intron (NM_001278555, intron 3 of 5) MER20|DNA|hAT-Charlie 9143 NM_001278554 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 179.834-9 chr22 49759057 49759317 + 1.16667 NA Intergenic MSTB1|LTR|ERVL-MaLR 65144 NM_001349940 23774 Hs.127950 NM_014577 ENSG00000100425 BRD1 BRL|BRPF1|BRPF2 bromodomain containing 1 protein-coding 209.667-30 chr5 43383191 43383568 + 1.16667 NA intron (NM_001301874, intron 2 of 3) intron (NM_001301874, intron 2 of 3) 13758 NM_001301875 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 151.667-67 chr5 44894758 44894935 + 1.16667 NA Intergenic L1MA3|LINE|L1 85899 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 231.5-8 chr2 129107065 129107483 + 1.16667 NA Intergenic Intergenic 166617 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 192-51 chr8 49414233 49414508 + 1.16667 NA Intergenic Intergenic 97810 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 157.5-51 chr5 74955984 74956200 + 1.16667 NA Intergenic MLT2B4|LTR|ERVL -89126 NM_015566 26049 Hs.91662 NM_015566 ENSG00000198780 FAM169A SLAP75 family with sequence similarity 169 member A protein-coding 332.5-6 chr22 22099196 22099690 + 1.16667 NA Intergenic Intergenic -55509 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 242.667-14 chr16 82036814 82037202 + 1.16667 NA intron (NM_002153, intron 1 of 4) intron (NM_002153, intron 1 of 4) 1755 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 265-13 chr2 13819886 13820329 + 1.16667 NA Intergenic L2c|LINE|L2 580851 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 127.5-39 chr20 54012984 54013190 + 1.16667 NA intron (NM_001366297, intron 4 of 8) intron (NM_001366297, intron 4 of 8) 45933 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 335-6 chr5 67082656 67083138 + 1.16667 NA intron (NM_001297651, intron 2 of 25) L1MC4|LINE|L1 78242 NM_001297651 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 205.167-32 chr5 22528507 22528820 + 1.16667 NA intron (NM_004061, intron 1 of 14) ERVL-B4-int|LTR|ERVL -314813 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 179.833-23 chr3 164716665 164716943 + 1.16667 NA intron (NR_126405, intron 3 of 3) MER5A|DNA|hAT-Charlie 114676 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 196.5-2 chr1 105708541 105708788 + 1.16667 NA Intergenic Intergenic -89729 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 184.5-10 chr11 24817086 24817282 + 1.16667 NA intron (NM_001252010, intron 5 of 9) MIRb|SINE|MIR 320131 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 199.667-17 chr14 40743316 40743527 + 1.16667 NA Intergenic HERV16-int|LTR|ERVL -211290 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 236.834-8 chr22 50143541 50143802 + 1.16667 NA intron (NM_018995, intron 17 of 26) intron (NM_018995, intron 17 of 26) -3384 NM_001164106 54456 Hs.62880 NM_018995 ENSG00000073146 MOV10L1 CHAMP|DJ402G11.8 Mov10 like RISC complex RNA helicase 1 protein-coding 228.334-2 chr11 119749747 119750020 + 1.16667 NA Intergenic MIRb|SINE|MIR 20300 NR_120587 102724301 Hs.637640 NR_120587 ENSG00000254854 LOC102724301 - uncharacterized LOC102724301 ncRNA 141-7 chr10 45492897 45493094 + 1.16667 NA intron (NM_001282866, intron 2 of 7) Tigger4a|DNA|TcMar-Tigger -39874 NR_120674 102724323 Hs.559151 NR_120674 ENSG00000231964 LOC102724323 - uncharacterized LOC102724323 ncRNA 217-25 chr4 86204989 86205216 + 1.16667 NA intron (NM_001363657, intron 2 of 13) intron (NM_001363657, intron 2 of 13) 85296 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 329.501 chr4 5718358 5718732 + 1.16667 NA intron (NM_001306090, intron 1 of 20) Tigger17a|DNA|TcMar-Tigger 7344 NM_001306092 2121 Hs.646899 NM_014556 ENSG00000072840 EVC DWF-1|EVC1|EVCL EvC ciliary complex subunit 1 protein-coding 120-71 chr3 72357706 72357825 + 1.16667 NA Intergenic AluJr|SINE|Alu 88858 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 298.334-3 chrX 80122337 80122679 + 1.16667 NA Intergenic Intergenic 99448 NM_001303475 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 207.333-23 chr18 7355235 7355672 + 1.16667 NA Intergenic Intergenic 105553 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 150-23 chr14 68628141 68628332 + 1.16667 NA intron (NR_135816, intron 1 of 1) intron (NR_135816, intron 1 of 1) 551 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 428.834 chr14 45057857 45058423 + 1.16667 NA intron (NR_131765, intron 16 of 19) L1M2|LINE|L1 -25976 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 248.834-6 chr18 50090898 50091273 + 1.16667 NA intron (NM_001080467, intron 1 of 39) intron (NM_001080467, intron 1 of 39) 35478 NR_036204 100422865 NR_036204 ENSG00000283343 MIR4320 - microRNA 4320 ncRNA 284.334-2 chr2 7851910 7852212 + 1.16667 NA Intergenic Intergenic 47594 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 207-41 chr5 125506692 125506942 + 1.16667 NA intron (NR_109887, intron 2 of 3) L1PA8|LINE|L1 13556 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 218-26 chr2 184960545 184960750 + 1.16667 NA Intergenic MIRc|SINE|MIR 206425 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 151.5-2 chr1 92501463 92501629 + 1.16667 NA Intergenic L1MA7|LINE|L1 -14621 NM_005263 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 122.334-4 chr20 31890200 31890304 + 1.16667 NA intron (NR_148013, intron 3 of 16) MLT1L|LTR|ERVL-MaLR 10435 NR_160276 164395 Hs.712915 NM_001008409 ENSG00000131044 TTLL9 C20orf125 tubulin tyrosine ligase like 9 protein-coding 166.667-48 chr6 65017625 65018062 + 1.16667 NA intron (NM_001292009, intron 13 of 43) MER90a|LTR|ERV1 -283575 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 170.334-3 chr2 50065765 50065925 + 1.16667 NA intron (NM_001330093, intron 19 of 22) intron (NM_001330093, intron 19 of 22) -91642 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 150-36 chr2 36386482 36386710 + 1.16667 NA intron (NM_016441, intron 1 of 16) L2c|LINE|L2 30818 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 293.333-8 chr2 150822197 150822732 + 1.16667 NA Intergenic Intergenic 193567 NR_110245 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 178.167-36 chr4 110778665 110778898 + 1.16667 NA Intergenic L1PA16|LINE|L1 81866 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 144.833-22 chr16 6917517 6917656 + 1.16667 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 143777 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 310.5-14 chr6 62654826 62655216 + 1.16667 NA Intergenic MER63A|DNA|hAT-Blackjack -368794 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 278.167-8 chr3 125254634 125254916 + 1.16667 NA intron (NM_001348434, intron 6 of 7) L1ME3A|LINE|L1 -42010 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 252.5-25 chr8 113468202 113468632 + 1.16667 NA Intergenic Intergenic -31478 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 311.667-4 chr3 125197755 125198064 + 1.16667 NA intron (NM_001195483, intron 1 of 12) L1MC4a|LINE|L1 13490 NM_001195483 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 210.833-8 chr14 66142763 66143109 + 1.16667 NA Intergenic L1PA13|LINE|L1 -343435 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 121.167-36 chr19 8813919 8814097 + 1.16667 NA intron (NM_001304350, intron 2 of 4) L1MB5|LINE|L1 8055 NM_001304350 148156 Hs.349444 NM_144693 ENSG00000167785 ZNF558 - zinc finger protein 558 protein-coding 290.501-2 chr4 48548655 48548985 + 1.16667 NA intron (NM_015030, intron 39 of 63) intron (NM_015030, intron 39 of 63) 58568 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 327.334-2 chr8 76039326 76039832 + 1.16667 NA Intergenic Intergenic -367075 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 360.167 chr3 4991695 4992379 + 1.16667 NA Intergenic L1ME4b|LINE|L1 -12076 NR_125915 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 228.167-11 chr2 50736153 50736480 + 1.16667 NA intron (NM_001330093, intron 4 of 22) L2b|LINE|L2 -40054 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 222.667-7 chr14 33272750 33272943 + 1.16667 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) 333967 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 210.5-19 chr18 21628952 21629217 + 1.16667 NA exon (NM_006938, exon 4 of 4) exon (NM_006938, exon 4 of 4) 16770 NM_001291916 6632 Hs.464734 NM_006938 ENSG00000167088 SNRPD1 HsT2456|SMD1|SNRPD|Sm-D1 small nuclear ribonucleoprotein D1 polypeptide protein-coding 203.333-19 chr2 43549884 43550275 + 1.16667 NA intron (NM_001083953, intron 19 of 37) L2a|LINE|L2 45895 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 266.501-3 chr2 181492197 181492511 + 1.16667 NA intron (NM_000885, intron 10 of 27) intron (NM_000885, intron 10 of 27) 34968 NM_000885 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 213.334 chr1 225641254 225641564 + 1.16667 NA intron (NM_001008493, intron 1 of 14) FLAM_C|SINE|Alu 11714 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 159.333-71 chr9 96779365 96779694 + 1.16667 NA Intergenic Intergenic -1400 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 298.667-4 chr15 86636902 86637184 + 1.16667 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -295837 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 275.501 chr22 19053951 19054419 + 1.16667 NA intron (NM_001184781, intron 6 of 9) L1MC4|LINE|L1 -5810 NR_024157 25786 Hs.720269 NR_024157 ENSG00000273311 DGCR11 DGS-D DiGeorge syndrome critical region gene 11 ncRNA 130.333-27 chr12 89288540 89288683 + 1.16667 NA Intergenic L1ME3A|LINE|L1 63890 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 261-14 chr2 191367682 191368116 + 1.16667 NA intron (NM_012223, intron 11 of 28) MIR|SINE|MIR 122495 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 305.667-4 chr11 103567398 103567686 + 1.16667 NA Intergenic Intergenic -282364 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 263.5-13 chr2 32576157 32576618 + 1.16667 NA intron (NM_016252, intron 66 of 73) intron (NM_016252, intron 66 of 73) -1569 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 395.168 chr2 115400041 115400584 + 1.16667 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 56497 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 252.334-6 chr8 135965299 135965745 + 1.16667 NA Intergenic Intergenic 508066 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 319.167-5 chr4 41835904 41836262 + 1.16667 NA Intergenic Intergenic 46528 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 345.333-7 chr8 130177287 130177859 + 1.16667 NA intron (NM_001362925, intron 9 of 29) intron (NM_001362925, intron 9 of 29) -92805 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 280.667-28 chr8 141746665 141747000 + 1.16667 NA Intergenic L1ME1|LINE|L1 39481 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 206.334-9 chr6 18844605 18844810 + 1.16667 NA Intergenic LTR78|LTR|ERV1 272923 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 137.5-6 chr1 82065565 82065753 + 1.16667 NA Intergenic Intergenic 263206 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 145.667-87 chr6 51657936 51658188 + 1.16667 NA intron (NM_138694, intron 61 of 66) intron (NM_138694, intron 61 of 66) 36192 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 225.5-20 chr15 23937425 23937762 + 1.16667 NA Intergenic L1MC3|LINE|L1 -37554 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 150.167-17 chr14 64082248 64082490 + 1.16667 NA intron (NM_015180, intron 57 of 114) MLT1E1A|LTR|ERVL-MaLR 12756 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 260.167-13 chr4 88934482 88934759 + 1.16667 NA intron (NM_014883, intron 5 of 23) intron (NM_014883, intron 5 of 23) -111259 NM_001265579 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 142.834-8 chr8 137654731 137654886 + 1.16667 NA Intergenic MLT2F|LTR|ERVL -241220 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 273.834 chr12 38402192 38402488 + 1.16667 NA Intergenic Intergenic 85566 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 166.5-44 chr4 71729889 71730109 + 1.16667 NA Intergenic Intergenic 54080 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 266.167-11 chr2 99657749 99658085 + 1.16667 NA intron (NM_001025108, intron 11 of 23) intron (NM_001025108, intron 11 of 23) -167900 NM_001321454 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 195.167-7 chr12 87672093 87672400 + 1.16667 NA Intergenic L1PA16|LINE|L1 -96566 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 135.167-47 chr2 79823622 79823746 + 1.16667 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 42899 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 300.667-12 chr8 32733499 32733957 + 1.16667 NA intron (NM_001322201, intron 4 of 8) intron (NM_001322201, intron 4 of 8) 11893 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 226.5-4 chr1 162725567 162726020 + 1.16667 NA intron (NM_006182, intron 3 of 17) Charlie4z|DNA|hAT-Charlie -64909 NM_001304512 51478 Hs.492925 NM_016371 ENSG00000132196 HSD17B7 PRAP|SDR37C1 hydroxysteroid 17-beta dehydrogenase 7 protein-coding 234.667-24 chr4 111296744 111297148 + 1.16667 NA Intergenic Intergenic -436299 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 160.5-37 chr4 43914036 43914192 + 1.16667 NA Intergenic Intergenic -102747 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 252.834-4 chr4 172987327 172987547 + 1.16667 NA intron (NM_001034845, intron 10 of 12) THE1C|LTR|ERVL-MaLR -181374 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 331.501 chr4 93573216 93573588 + 1.16667 NA intron (NM_001286838, intron 12 of 14) intron (NM_001286838, intron 12 of 14) -255351 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 352.667-6 chr20 52880170 52880711 + 1.16667 NA Intergenic Intergenic -91918 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 249-4 chr12 60122470 60122885 + 1.16667 NA Intergenic L1MC3|LINE|L1 433307 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 146.834 chr12 2678075 2678332 + 1.16667 NA intron (NR_045725, intron 3 of 3) intron (NR_045725, intron 3 of 3) -5983 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 190.333-50 chr6 121902727 121903069 + 1.16667 NA Intergenic MLT1F|LTR|ERVL-MaLR 467252 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 240.667-26 chr3 104788180 104788616 + 1.16667 NA Intergenic Intergenic -578315 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 327.667-2 chr14 42510934 42511399 + 1.16667 NA Intergenic L1M4c|LINE|L1 904310 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 191.834-5 chr22 44499075 44499271 + 1.16667 NA promoter-TSS (NM_032287) promoter-TSS (NM_032287) -940 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 335.167-5 chr20 32432590 32433243 + 1.16667 NA exon (NM_001363734, exon 9 of 11) exon (NM_001363734, exon 9 of 11) 50574 NM_001351680 140688 Hs.516978 NM_080616 ENSG00000197183 NOL4L C20orf112|C20orf113 nucleolar protein 4 like protein-coding 174.667-41 chr3 80613628 80613913 + 1.16667 NA Intergenic Intergenic -151127 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 197.834-6 chr22 33007433 33007743 + 1.16667 NA promoter-TSS (NM_133633) promoter-TSS (NM_133633) -767 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 200-65 chr8 108875640 108875938 + 1.16667 NA Intergenic Intergenic -88195 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 162.167-35 chr3 132171489 132171781 + 1.16667 NA Intergenic Intergenic -132029 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 183-50 chr7 20142735 20143013 + 1.16667 NA intron (NR_046756, intron 1 of 3) intron (NR_046756, intron 1 of 3) 958 NR_046756 100874041 Hs.145104 NR_046756 ENSG00000228598 MACC1-AS1 - MACC1 antisense RNA 1 ncRNA 373.501 chr2 67377436 67377941 + 1.16667 NA Intergenic Intergenic -19645 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 169.5-14 chr12 12487261 12487498 + 1.16667 NA intron (NM_030640, intron 4 of 6).2 intron (NM_030640, intron 4 of 6).2 75484 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 254.334-3 chr11 44136903 44137137 + 1.16667 NA intron (NM_207122, intron 7 of 13) intron (NM_207122, intron 7 of 13) 40823 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 270.334-4 chr14 86417315 86417805 + 1.16667 NA Intergenic L1PA3|LINE|L1 482882 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 421.5-3 chr6 55466887 55467682 + 1.16667 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 111930 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 193.167-34 chr7 126528963 126529250 + 1.16667 NA intron (NM_001371085, intron 9 of 10) intron (NM_001371085, intron 9 of 10) 529078 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 213.167-6 chr11 124903082 124903399 + 1.16667 NA Intergenic MLT1H|LTR|ERVL-MaLR -5375 NM_019055 54538 Hs.524121 NM_019055 ENSG00000154133 ROBO4 ECSM4|MRB roundabout guidance receptor 4 protein-coding 275.834 chr18 4122594 4122903 + 1.16667 NA intron (NM_001242761, intron 2 of 11) LTR68|LTR|ERV1 -141854 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 189.834-4 chr2 107342032 107342612 + 1.16667 NA intron (NR_049853, intron 1 of 3) intron (NR_049853, intron 1 of 3) 7203 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 181.833-28 chr2 163264217 163264525 + 1.16667 NA Intergenic Intergenic -425604 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 328.667-12 chr5 27098792 27099516 + 1.16667 NA Intergenic Intergenic -60568 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 309.834 chr1 182133801 182134195 + 1.16667 NA Intergenic Intergenic -72286 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 326.5-4 chr14 83722977 83723492 + 1.16667 NA Intergenic Intergenic 1080602 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 157.5-17 chr14 29195499 29195728 + 1.16667 NA Intergenic L1MC3|LINE|L1 -409826 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 243.501-2 chr11 123240644 123240901 + 1.16667 NA Intergenic Intergenic -45524 NM_024769 79827 Hs.591949 NM_024769 ENSG00000166250 CLMP ACAM|ASAM|CSBM|CSBS CXADR like membrane protein protein-coding 187.5-34 chr4 45905692 45905901 + 1.16667 NA Intergenic L1MA4|LINE|L1 218258 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 244.834-4 chr9 8588693 8589002 + 1.16667 NA intron (NM_130392, intron 3 of 30) intron (NM_130392, intron 3 of 30) 145099 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 151.167-21 chr17 47141054 47141268 + 1.16667 NA intron (NM_001256, intron 12 of 18) L2a|LINE|L2 48134 NM_001353051 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 322.834-4 chr5 27298540 27298985 + 1.16667 NA Intergenic MLT1K|LTR|ERVL-MaLR -173530 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 268.5-13 chr4 71319704 71320148 + 1.16667 NA intron (NM_001098484, intron 3 of 25) intron (NM_001098484, intron 3 of 25) -19127 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 233.333-9 chr14 72062167 72062556 + 1.16667 NA intron (NM_001370288, intron 2 of 16) L2a|LINE|L2 128834 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 113.167-12 chr11 24295640 24295850 + 1.16667 NA Intergenic Intergenic -201308 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 410.168 chr2 74319749 74320241 + 1.16667 NA intron (NM_133478, intron 5 of 30) HAL1|LINE|L1 -4970 NM_021196 57835 Hs.594099 NM_021196 ENSG00000188687 SLC4A5 NBC4|NBCe2 solute carrier family 4 member 5 protein-coding 279.334-5 chr3 18182159 18182799 + 1.16667 NA intron (NR_161333, intron 4 of 4) L1MA7|LINE|L1 219927 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 227.167-19 chr2 206207090 206207508 + 1.16667 NA intron (NR_104359, intron 1 of 5).2 AluSx|SINE|Alu 3923 NR_104359 101669764 Hs.574781 NR_104359 GPR1-AS GPR1-AS1|GPR1AS GPR1 antisense RNA ncRNA 316.834-4 chr17 10476503 10477059 + 1.16667 NA intron (NR_125367, intron 2 of 10) intron (NR_125367, intron 2 of 10) -7222 NM_017533 4622 Hs.711141 NM_017533 ENSG00000264424 MYH4 MYH2B|MyHC-2B|MyHC-IIb myosin heavy chain 4 protein-coding 182.667-7 chr11 14824450 14824636 + 1.16667 NA intron (NM_000922, intron 7 of 15) L1PA13|LINE|L1 67662 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 199.833-33 chrX 125997691 125998055 + 1.16667 NA Intergenic Intergenic -111889 NR_110409 101928495 Hs.545998 NR_110409 ENSG00000237208 LOC101928495 - uncharacterized LOC101928495 ncRNA 247.667-14 chr20 4907411 4907682 + 1.16667 NA intron (NM_005116, intron 4 of 16) L1M2|LINE|L1 -83938 NM_014737 9770 Hs.631504 NM_014737 ENSG00000101265 RASSF2 CENP-34|RASFADIN Ras association domain family member 2 protein-coding 189.167-3 chr1 71443731 71443999 + 1.16667 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 362541 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 272.167-4 chr10 125304778 125305144 + 1.16667 NA Intergenic MER6|DNA|TcMar-Tigger -143931 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 251.5-21 chr7 38597005 38597421 + 1.16667 NA intron (NM_001635, intron 1 of 20) intron (NM_001635, intron 1 of 20) 34160 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 244.667-5 chr12 51418815 51419227 + 1.16667 NA intron (NM_001258401, intron 1 of 24) intron (NM_001258401, intron 1 of 24) -5810 NR_047672 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 168.5-5 chr1 103226055 103226447 + 1.16667 NA Intergenic L1M5|LINE|L1 -117729 NR_134980 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 280.167-3 chr2 14658834 14659350 + 1.16667 NA Intergenic L1MEf|LINE|L1 26375 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 219.333-44 chr9 83741800 83742039 + 1.16667 NA intron (NM_025211, intron 12 of 12) intron (NM_025211, intron 12 of 12) 33588 NR_135840 105376114 Hs.9589 NR_135839 ENSG00000254473 LOC105376114 - uncharacterized LOC105376114 ncRNA 195-31 chr3 107397149 107397397 + 1.16667 NA Intergenic LTR81|LTR|Gypsy -15114 NR_126332 101929579 Hs.552750 NR_126332 LOC101929579 - uncharacterized LOC101929579 ncRNA 247.5-22 chr3 117220154 117220486 + 1.16667 NA Intergenic L1ME4a|LINE|L1 298889 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 214.834-9 chr9 76182505 76182731 + 1.16667 NA intron (NR_120409, intron 15 of 19) LTR37B|LTR|ERV1 211808 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 162.667-20 chr14 58170206 58170436 + 1.16667 NA Intergenic AluSq2|SINE|Alu -18108 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 145.667-48 chr2 38610660 38610971 + 1.16667 NA Intergenic MIRc|SINE|MIR -7779 NM_001142650 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 166.833-15 chr14 45014365 45014619 + 1.16667 NA intron (NM_001308120, intron 7 of 19) intron (NM_001308120, intron 7 of 19) 52302 NR_131765 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 155.334-3 chr18 54390471 54390616 + 1.16667 NA Intergenic AluSq2|SINE|Alu 32626 NR_110234 162681 Hs.208701 NM_173529 ENSG00000166845 C18orf54 LAS2 chromosome 18 open reading frame 54 protein-coding 191.834-3 chr15 27149646 27149904 + 1.16667 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 11544 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 144.333-70 chr5 83610728 83610994 + 1.16667 NA Intergenic LTR16A|LTR|ERVL -48547 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 471.334 chrUn_KI270438v1 105436 106040 + 1.16667 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 210.667-52 chr7 126008196 126008467 + 1.16667 NA Intergenic Intergenic -744040 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 268.334-7 chr3 101615076 101615331 + 1.16667 NA Intergenic L1MA9|LINE|L1 41023 NM_020357 57092 Hs.732633 NM_020357 ENSG00000081154 PCNP - PEST proteolytic signal containing nuclear protein protein-coding 121.834-3 chr15 93639014 93639171 + 1.16667 NA Intergenic HERV16-int|LTR|ERVL -217468 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 149.333-25 chr13 37656254 37656520 + 1.16667 NA intron (NM_003306, intron 6 of 10) intron (NM_003306, intron 6 of 10) -57543 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 162.334-6 chr2 64129381 64129632 + 1.16667 NA intron (NM_020651, intron 1 of 6) intron (NM_020651, intron 1 of 6) 14914 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 202.001-2 chr6 144633914 144634093 + 1.16667 NA intron (NM_007124, intron 50 of 73) intron (NM_007124, intron 50 of 73) 228348 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 297.334 chr21 26116962 26117402 + 1.16667 NA intron (NM_001136131, intron 1 of 15) AluSz|SINE|Alu 23208 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 238.667-18 chr21 29020982 29021341 + 1.16667 NA Intergenic L1ME2z|LINE|L1 -1790 NM_001320724 10069 Hs.713123 NM_016940 ENSG00000156253 RWDD2B C21orf6|GL011 RWD domain containing 2B protein-coding 252.834 chr10 79569787 79570217 + 1.16667 NA Intergenic L1ME3|LINE|L1 -9595 NM_001098668 729238 Hs.523084 NM_001098668 ENSG00000185303 SFTPA2 COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-2A|SP-A|SPA2|SPAII surfactant protein A2 protein-coding 270.167-16 chr8 107136897 107137150 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 199492 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 204.834 chr1 41213726 41214012 + 1.16667 NA intron (NM_001172218, intron 1 of 15) MER39|LTR|ERV1 28437 NM_012236 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 219.167-11 chr15 64252005 64252537 + 1.16667 NA intron (NM_001329607, intron 3 of 11) intron (NM_001329607, intron 3 of 11) -89116 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 286-10 chr4 39702522 39702800 + 1.16667 NA intron (NM_001111113, intron 1 of 4) intron (NM_001111113, intron 1 of 4) 4525 NM_005339 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 280.167-7 chr3 191213615 191213878 + 1.16667 NA intron (NR_133663, intron 5 of 5) intron (NR_133663, intron 5 of 5) 14505 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 169.5-66 chr7 34033931 34034113 + 1.16667 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 128483 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 217.167-2 chr10 53835105 53835311 + 1.16667 NA intron (NM_001354411, intron 30 of 34) intron (NM_001354411, intron 30 of 34) -651022 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 238.5-22 chr3 85241882 85242208 + 1.16667 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -143665 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 116.5-43 chr20 24301271 24301439 + 1.16667 NA Intergenic Intergenic 101588 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 155.333-21 chr12 5346382 5346575 + 1.16667 NA Intergenic Intergenic -85630 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 139-41 chr3 97948511 97948649 + 1.16667 NA intron (NM_001042533, intron 7 of 9) MER90a|LTR|ERV1 23851 NM_153182 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 149.333-12 chr10 65704205 65704424 + 1.16667 NA intron (NR_120647, intron 4 of 5) intron (NR_120647, intron 4 of 5) 132889 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 145.667-88 chr6 51754811 51755147 + 1.16667 NA intron (NM_138694, intron 55 of 66) intron (NM_138694, intron 55 of 66) 133109 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 196.334-7 chr2 59221624 59221900 + 1.16667 NA intron (NR_110219, intron 1 of 2) intron (NR_110219, intron 1 of 2) 4054 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 162.5-2 chr1 159757514 159757766 + 1.16667 NA Intergenic Intergenic -23322 NM_001319659 54935 Hs.425801 NM_017823 ENSG00000158716 DUSP23 DUSP25|LDP-3|LDP3|MOSP|VHZ dual specificity phosphatase 23 protein-coding 121.333-94 chr6 64632644 64632790 + 1.16667 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -668701 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 316.834-2 chr12 55589437 55589758 + 1.16667 NA Intergenic L1M1|LINE|L1 15182 NM_001258285 121129 Hs.742584 NM_001258285 ENSG00000179615 OR2AP1 OR2AP1P olfactory receptor family 2 subfamily AP member 1 protein-coding 144.667-68 chr4 40820571 40820711 + 1.16667 NA intron (NM_173075, intron 16 of 16) AluSq2|SINE|Alu 36514 NM_001166052 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 232.667-24 chr5 4688212 4688484 + 1.16667 NA Intergenic L1PA8|LINE|L1 -85133 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 165.334-5 chr6 11890142 11890345 + 1.16667 NA Intergenic Intergenic 111001 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 154.167-17 chr13 91135446 91135647 + 1.16667 NA intron (NR_047004, intron 2 of 3) intron (NR_047004, intron 2 of 3) -45929 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 235.5-29 chr5 94336831 94337142 + 1.16667 NA intron (NM_001145678, intron 20 of 20) L1ME1|LINE|L1 -225287 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 254.334-7 chr7 112928533 112928802 + 1.16667 NA intron (NM_152556, intron 1 of 4) intron (NM_152556, intron 1 of 4) 11208 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 180.334-4 chr17 72535240 72535484 + 1.16667 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 57442 NR_137280 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 273.167-18 chr9 37754107 37754648 + 1.16667 NA intron (NR_104612, intron 1 of 8) L2a|LINE|L2 572 NM_144964 158234 Hs.655614 NM_144964 ENSG00000165275 TRMT10B RG9MTD3|bA3J10.9 tRNA methyltransferase 10B protein-coding 365.501-3 chr8 49915472 49915990 + 1.16667 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) 4324 NM_001321776 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 209-23 chr2 36732877 36733084 + 1.16667 NA intron (NM_001177969, intron 3 of 14) L2b|LINE|L2 36273 NM_001328661 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 114.834 chr10 90921134 90921272 + 1.16667 NA promoter-TSS (NM_014391) promoter-TSS (NM_014391) 72 NM_014391 27063 Hs.448589 NM_014391 ENSG00000148677 ANKRD1 ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 ankyrin repeat domain 1 protein-coding 172.667-88 chrX 58073435 58073644 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr -162906 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 292.667-3 chr12 32416328 32416754 + 1.16667 NA intron (NM_001370298, intron 1 of 16) L1M1|LINE|L1 16983 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 194.5-6 chr14 47690420 47690979 + 1.16667 NA Intergenic Intergenic -15745 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 196.5-12 chr13 100567232 100567479 + 1.16667 NA intron (NM_001195087, intron 2 of 2) L1MC4|LINE|L1 21437 NM_001195087 87769 Hs.350868 NM_033110 ENSG00000134864 GGACT A2LD1 gamma-glutamylamine cyclotransferase protein-coding 137.167-27 chr18 4539876 4540171 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -84716 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 163.333-52 chr3 168287967 168288204 + 1.16667 NA intron (NR_021485, intron 1 of 15) intron (NR_021485, intron 1 of 15) 38563 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 143.167-16 chr13 60110160 60110385 + 1.16667 NA intron (NM_001258368, intron 1 of 25) intron (NM_001258368, intron 1 of 25) -34426 NR_046540 100874196 Hs.662188 NR_046540 ENSG00000223815 DIAPH3-AS2 DIPAH3-AS2 DIAPH3 antisense RNA 2 ncRNA 234.833-8 chr14 66971668 66972072 + 1.16667 NA intron (NM_001024218, intron 8 of 21) Charlie1|DNA|hAT-Charlie -217570 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 216.334-3 chr17 785450 785751 + 1.16667 NA intron (NM_018146, intron 2 of 3) intron (NM_018146, intron 2 of 3) 3247 NM_001317947 55178 Hs.182729 NM_018146 ENSG00000171861 MRM3 RMTL1|RNMTL1 mitochondrial rRNA methyltransferase 3 protein-coding 133.667-6 chr1 75886852 75886977 + 1.16667 NA intron (NM_002440, intron 15 of 19) intron (NM_002440, intron 15 of 19) 45490 NM_080868 127247 Hs.125423 NM_080868 ENSG00000154007 ASB17 Asb-17 ankyrin repeat and SOCS box containing 17 protein-coding 212.167-29 chrX 46817011 46817546 + 1.16667 NA Intergenic Intergenic -19765 NM_006915 6102 Hs.44766 NM_006915 ENSG00000102218 RP2 DELXp11.3|NM23-H10|NME10|TBCCD2|XRP2 RP2 activator of ARL3 GTPase protein-coding 293.667-4 chr15 60557077 60557342 + 1.16667 NA intron (NM_134260, intron 2 of 11) intron (NM_134260, intron 2 of 11) 35317 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 207.667-18 chr18 2615183 2615558 + 1.16667 NA intron (NM_006101, intron 16 of 16) MLT1D|LTR|ERVL-MaLR 40025 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox 3 pseudogene 2 pseudo 173.167-9 chr11 108292711 108293087 + 1.16667 NA intron (NM_001351834, intron 31 of 63) intron (NM_001351834, intron 31 of 63) 69370 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 291.501-2 chr5 78316713 78316993 + 1.16667 NA Intergenic L1MCa|LINE|L1 -22098 NM_003664 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 346.833-3 chr2 223665837 223666425 + 1.16667 NA Intergenic L2c|LINE|L2 -63770 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 279.834 chr1 92355112 92355438 + 1.16667 NA intron (NM_024813, intron 11 of 12) MIRb|SINE|MIR 56216 NM_024813 79871 Hs.444421 NM_024813 ENSG00000122484 RPAP2 C1orf82|Rtr1 RNA polymerase II associated protein 2 protein-coding 134.667-9 chr10 35543899 35544076 + 1.16667 NA intron (NM_181698, intron 9 of 11) Tigger3b|DNA|TcMar-Tigger -61354 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 256.667-11 chr14 44306854 44307589 + 1.16667 NA Intergenic Intergenic 200062 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 333.5-6 chr7 55138423 55139118 + 1.16667 NA intron (NM_001346900, intron 1 of 27) MSTD|LTR|ERVL-MaLR 28931 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 333.001 chr15 53635857 53636336 + 1.16667 NA intron (NM_182758, intron 14 of 19) intron (NM_182758, intron 14 of 19) -94993 NM_001277176 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 191.667-27 chr2 191976550 191976878 + 1.16667 NA intron (NM_001305134, intron 7 of 9) intron (NM_001305134, intron 7 of 9) -129626 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 118-86 chr4 98791756 98791970 + 1.16667 NA Intergenic L1MEf|LINE|L1 132961 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 163.667-43 chr20 57736576 57736765 + 1.16667 NA Intergenic MLT1K|LTR|ERVL-MaLR -25134 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 200.167-11 chr12 49171103 49171629 + 1.16667 NA Intergenic AluSx|SINE|Alu 17714 NM_006009 7846 Hs.654422 NM_006009 ENSG00000167552 TUBA1A B-ALPHA-1|LIS3|TUBA3 tubulin alpha 1a protein-coding 147.667-15 chr11 26343990 26344237 + 1.16667 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) 11983 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 149.167-45 chr4 170957190 170957570 + 1.16667 NA Intergenic L1ME1|LINE|L1 -83222 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 180.5-8 chr10 18738849 18739123 + 1.16667 NA Intergenic Intergenic 79555 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 262.167-18 chr4 58175172 58175625 + 1.16667 NA Intergenic Intergenic 360930 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 247.667-9 chr17 61579110 61579610 + 1.16667 NA Intergenic Intergenic 11859 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 347.501 chr21 20334424 20334754 + 1.16667 NA Intergenic L1MEc|LINE|L1 -75904 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 240.834-10 chr8 125809196 125809452 + 1.16667 NA Intergenic MIR|SINE|MIR 141873 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 246-15 chr4 97895307 97895640 + 1.16667 NA intron (NM_174952, intron 8 of 10) intron (NM_174952, intron 8 of 10) 248003 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 121.5-9 chr1 215142678 215142818 + 1.16667 NA intron (NM_001017424, intron 3 of 6) intron (NM_001017424, intron 3 of 6) 60011 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 287.167-3 chr12 12171844 12172116 + 1.16667 NA intron (NM_002336, intron 7 of 22).2 intron (NM_002336, intron 7 of 22).2 60028 NR_036262 100422885 NR_036262 ENSG00000283498 MIR1244-2 - microRNA 1244-2 ncRNA 257.334-5 chr3 104143993 104144244 + 1.16667 NA Intergenic L1MC|LINE|L1 -620002 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 239.834-3 chr3 145725697 145725973 + 1.16667 NA Intergenic Intergenic 343350 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 113.5-93 chr9 102745157 102745261 + 1.16667 NA Intergenic Intergenic 225572 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 259.667-2 chr11 28203326 28203744 + 1.16667 NA intron (NM_001113528, intron 3 of 6) intron (NM_001113528, intron 3 of 6) 95147 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 197.333-61 chr8 122339958 122340177 + 1.16667 NA Intergenic MIRb|SINE|MIR 228577 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 119.167-79 chr5 108157560 108157686 + 1.16667 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 224475 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 253-13 chr22 26711060 26711443 + 1.16667 NA intron (NR_110543, intron 1 of 5) LTR16C|LTR|ERVL 38408 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 386.834 chr11 111346217 111346796 + 1.16667 NA Intergenic Intergenic -1251 NR_039712 100616330 NR_039712 ENSG00000264032 MIR4491 mir-4491 microRNA 4491 ncRNA 145.334-3 chr2 141896683 141896887 + 1.16667 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 234916 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 198.334-2 chr2 135011684 135011910 + 1.16667 NA intron (NM_001321177, intron 2 of 9) AluJr4|SINE|Alu 11852 NM_001321177 80122 Hs.659395 NM_025052 ENSG00000176601 MAP3K19 RCK|YSK4 mitogen-activated protein kinase kinase kinase 19 protein-coding 305.334-6 chr7 67733186 67733645 + 1.16667 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -286838 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 191.334-9 chr6 101555196 101555653 + 1.16667 NA intron (NM_001166247, intron 1 of 16) intron (NM_001166247, intron 1 of 16) 156439 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 129.167-6 chr1 229603519 229603721 + 1.16667 NA intron (NM_001025247, intron 3 of 3) intron (NM_001025247, intron 3 of 3) 22427 NM_014409 27097 Hs.270621 NM_014409 ENSG00000135801 TAF5L PAF65B TATA-box binding protein associated factor 5 like protein-coding 200.334-6 chr3 53731096 53731371 + 1.16667 NA intron (NM_001128840, intron 17 of 47) intron (NM_001128840, intron 17 of 47) 115186 NM_018397 55349 Hs.126688 NM_018397 ENSG00000016391 CHDH - choline dehydrogenase protein-coding 259.5 chr1 90511576 90511943 + 1.16667 NA Intergenic Intergenic -145991 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 268-14 chr3 20234141 20234533 + 1.16667 NA Intergenic MER113|DNA|hAT-Charlie -48104 NM_001012411 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 205.667-55 chr7 42099463 42099864 + 1.16667 NA intron (NM_000168, intron 3 of 14) AluJr|SINE|Alu 137546 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 133-64 chr4 78779697 78779897 + 1.16667 NA intron (NM_017593, intron 1 of 13) intron (NM_017593, intron 1 of 13) 3419 NM_198892 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 160-61 chr5 25704173 25704443 + 1.16667 NA Intergenic L1MB8|LINE|L1 513355 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 157.167-63 chr8 99799259 99799505 + 1.16667 NA intron (NM_017890, intron 43 of 61) intron (NM_017890, intron 43 of 61) 94325 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 280.167-5 chr3 69837831 69838199 + 1.16667 NA intron (NM_001354607, intron 2 of 10) intron (NM_001354607, intron 2 of 10) -28209 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 173.834-4 chr16 13899983 13900138 + 1.16667 NA Intergenic MLT1J|LTR|ERVL-MaLR -20097 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 147.667-36 chr20 49763928 49764066 + 1.16667 NA Intergenic AluSx|SINE|Alu -48716 NM_001260491 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 408.334-2 chr3 176639748 176640406 + 1.16667 NA Intergenic L1PA10|LINE|L1 -4545 NR_109968 100505547 Hs.253350 NR_109968 LINC01208 - long intergenic non-protein coding RNA 1208 ncRNA 239.667-24 chr4 86090511 86090803 + 1.16667 NA intron (NM_001363657, intron 8 of 13) intron (NM_001363657, intron 8 of 13) -29149 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 134.333-56 chr2 58110687 58110991 + 1.16667 NA intron (NM_001130483, intron 7 of 13) LTR16B1|LTR|ERVL 64127 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 128.333-97 chr5 72264587 72264823 + 1.16667 NA intron (NM_001286748, intron 4 of 11) MLT1C|LTR|ERVL-MaLR 55535 NM_001286751 23107 Hs.482491 NM_015084 ENSG00000113048 MRPS27 MRP-S27|S27mt mitochondrial ribosomal protein S27 protein-coding 240.333-15 chr2 113968229 113968560 + 1.16667 NA promoter-TSS (NR_148507) promoter-TSS (NR_148507) -928 NR_148507 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 225.667-28 chr6 39096950 39097331 + 1.16667 NA Intergenic L1MC4|LINE|L1 18046 NM_001304793 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 131.833-10 chr12 27251212 27251415 + 1.16667 NA intron (NM_015000, intron 1 of 13) MIRc|SINE|MIR 7027 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 432.834 chr5 28789299 28789753 + 1.16667 NA Intergenic GA-rich|Low_complexity|Low_complexity -137344 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 259-21 chr5 34838207 34838476 + 1.16667 NA promoter-TSS (NM_144725) promoter-TSS (NM_144725) -823 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 161.834 chr10 76865746 76865948 + 1.16667 NA Intergenic Intergenic -22197 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 173.667-70 chr8 135276745 135276982 + 1.16667 NA intron (NR_120396, intron 1 of 4) L1PA15|LINE|L1 42732 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 272-13 chr6 72503835 72504209 + 1.16667 NA Intergenic Intergenic -117821 NM_001160132 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 251.334-7 chr8 144977340 144977743 + 1.16667 NA non-coding (NR_023392, exon 5 of 5) non-coding (NR_023392, exon 5 of 5) -17324 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 284.667-7 chr16 63660838 63661267 + 1.16667 NA Intergenic Ricksha_0|DNA|MULE-MuDR 1461011 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 312.834-4 chr2 202458836 202459384 + 1.16667 NA intron (NM_001204, intron 1 of 12) intron (NM_001204, intron 1 of 12) 82783 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 232.834-4 chr22 31838314 31838576 + 1.16667 NA intron (NR_146296, intron 26 of 42) AluSz6|SINE|Alu 84422 NM_001369903 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 117.667-85 chr4 33333350 33333540 + 1.16667 NA Intergenic L1PA15-16|LINE|L1 706448 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 197.167-5 chr1 172921676 172921940 + 1.16667 NA Intergenic Intergenic 129155 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 116.667 chr1 68930001 68930143 + 1.16667 NA Intergenic Intergenic -125826 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 197.834-7 chr3 27949035 27949278 + 1.16667 NA Intergenic L1MA9|LINE|L1 -115020 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 257-2 chr1 239852016 239852602 + 1.16667 NA intron (NM_001347716, intron 7 of 7) intron (NM_001347716, intron 7 of 7) 47563 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 132.167-14 chr11 87530254 87530405 + 1.16667 NA Intergenic Intergenic 189082 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 225.334 chr1 191125020 191125288 + 1.16667 NA Intergenic Intergenic 103344 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 281.501 chr18 53967737 53968077 + 1.16667 NA Intergenic L1MEg|LINE|L1 254505 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 175-42 chr4 62159055 62159292 + 1.16667 NA intron (NR_110595, intron 1 of 7) intron (NR_110595, intron 1 of 7) 2592 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 144-39 chr2 176043425 176043612 + 1.16667 NA Intergenic AluSx3|SINE|Alu 40444 NM_001080458 344191 Hs.452341 NM_001080458 ENSG00000174279 EVX2 EVX-2 even-skipped homeobox 2 protein-coding 209.834-7 chr7 100058656 100058986 + 1.16667 NA intron (NM_145914, intron 3 of 3) AluJr|SINE|Alu 9027 NM_001362779 7589 Hs.632294 NM_145914 ENSG00000166529 ZSCAN21 NY-REN-21|ZNF38|Zipro1 zinc finger and SCAN domain containing 21 protein-coding 119.5-46 chr2 27574488 27574598 + 1.16667 NA Intergenic Intergenic -1979 NM_032266 84226 Hs.131021 NM_032266 ENSG00000221843 C2orf16 - chromosome 2 open reading frame 16 protein-coding 177.333-7 chr10 25273946 25274264 + 1.16667 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -97829 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 266.001-2 chr5 24679449 24679733 + 1.16667 NA Intergenic Intergenic -34613 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 151.5-27 chr17 74138720 74139154 + 1.16667 NA Intergenic AluSz|SINE|Alu -64741 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 339.834-2 chr12 89654130 89654630 + 1.16667 NA intron (NM_001001323, intron 2 of 21) intron (NM_001001323, intron 2 of 21) 54458 NM_001366532 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 144-9 chr11 22117295 22117581 + 1.16667 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -75647 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 197.834-3 chr2 119494508 119494713 + 1.16667 NA intron (NM_002980, intron 1 of 12) intron (NM_002980, intron 1 of 12) 18156 NR_147847 107105282 Hs.670673 NR_147846 ENSG00000231013 LOC107105282 - uncharacterized LOC107105282 ncRNA 204.167-32 chr8 121946976 121947204 + 1.16667 NA Intergenic MIRb|SINE|MIR -305650 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 269.5-18 chr8 129635759 129636133 + 1.16667 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 44293 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 151.5-76 chr9 82256500 82256746 + 1.16667 NA Intergenic Intergenic 267851 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 231.834-2 chr10 62125807 62126026 + 1.16667 NA Intergenic L1MB3|LINE|L1 76559 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 243.334-5 chr8 26129232 26129540 + 1.16667 NA Intergenic Intergenic -83973 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 271.5-2 chr1 91685470 91685869 + 1.16667 NA intron (NR_036634, intron 17 of 17) intron (NR_036634, intron 17 of 17) 184561 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 249-8 chr18 4109981 4110467 + 1.16667 NA intron (NM_001242761, intron 2 of 11) Tigger3a|DNA|TcMar-Tigger 147871 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 179.334-6 chr3 135632573 135632826 + 1.16667 NA Intergenic Intergenic -333029 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 242.167-17 chr4 52241753 52242036 + 1.16667 NA Intergenic MER57B2|LTR|ERV1 190590 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 348.667-5 chr6 150077412 150078055 + 1.16667 NA Intergenic L1MEg|LINE|L1 -8612 NM_024518 79465 Hs.15422 NM_024518 ENSG00000131019 ULBP3 N2DL-3|NKG2DL3|RAET1N UL16 binding protein 3 protein-coding 126.5-43 chr2 116299275 116299409 + 1.16667 NA Intergenic L1MA4|LINE|L1 955527 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 174.5-2 chr1 161047460 161047665 + 1.16667 NA 3' UTR (NM_181720, exon 13 of 13) 3' UTR (NM_181720, exon 13 of 13) -1585 NM_007122 7391 Hs.414880 NM_007122 ENSG00000158773 USF1 FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11 upstream transcription factor 1 protein-coding 397.333 chr11 38793896 38794363 + 1.16667 NA Intergenic Intergenic 145271 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 239.334-3 chr3 158265773 158266025 + 1.16667 NA intron (NM_001271838, intron 4 of 9) L1MEb|LINE|L1 155810 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 224.334-6 chr6 123339658 123339992 + 1.16667 NA intron (NM_006073, intron 21 of 40) intron (NM_006073, intron 21 of 40) -99779 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 134.667-75 chr4 116039273 116039415 + 1.16667 NA Intergenic Intergenic -260381 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 262.334-3 chr5 58489180 58489519 + 1.16667 NA Intergenic Intergenic -2086 NM_152687 202309 Hs.547697 NM_152687 ENSG00000175857 GAPT C5orf29 GRB2 binding adaptor protein, transmembrane protein-coding 290.667-6 chr2 192232653 192233114 + 1.16667 NA Intergenic Intergenic -37950 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 235.167-6 chr14 74020328 74020536 + 1.16667 NA intron (NM_025057, intron 1 of 11) intron (NM_025057, intron 1 of 11) 1083 NM_025057 80127 Hs.644621 NM_025057 ENSG00000119636 BBOF1 C14orf45|CCDC176 basal body orientation factor 1 protein-coding 248.5-3 chr11 41474730 41474961 + 1.16667 NA Intergenic MIR|SINE|MIR -15193 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 178.667-54 chr5 95487616 95487877 + 1.16667 NA intron (NM_014639, intron 37 of 42) L1M2|LINE|L1 67259 NM_014639 9652 Hs.482868 NM_014639 ENSG00000198677 TTC37 KIAA0372|Ski3|THES tetratricopeptide repeat domain 37 protein-coding 217.167-16 chr7 9508902 9509204 + 1.16667 NA Intergenic Intergenic -125217 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 287.333-8 chr4 119564342 119564695 + 1.16667 NA intron (NM_033437, intron 5 of 20) HAL1|LINE|L1 63219 NM_033430 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 301.834-3 chr2 42314932 42315254 + 1.16667 NA intron (NM_001145076, intron 16 of 21) intron (NM_001145076, intron 16 of 21) 44945 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 162.667-31 chr17 63633425 63633616 + 1.16667 NA intron (NM_002401, intron 2 of 15) Tigger19a|DNA|TcMar-Tigger 11103 NM_001330431 4215 Hs.29282 NM_002401 ENSG00000198909 MAP3K3 MAPKKK3|MEKK3 mitogen-activated protein kinase kinase kinase 3 protein-coding 170.834-12 chr9 102322853 102323060 + 1.16667 NA Intergenic L1MC3|LINE|L1 -196681 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 151.667-63 chr5 6446897 6447096 + 1.16667 NA Intergenic Intergenic -1863 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 171.667-67 chr5 94284020 94284334 + 1.16667 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -172478 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 165.167-15 chr14 89875617 89875858 + 1.16667 NA intron (NM_001284269, intron 5 of 5) L2c|LINE|L2 78799 NM_001284269 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 115.5-84 chr5 164033424 164033598 + 1.16667 NA Intergenic MER117|DNA|hAT-Charlie 433891 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 178.334-6 chr7 46420217 46420857 + 1.16667 NA Intergenic Intergenic 276585 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 347.167-2 chr14 61018652 61019105 + 1.16667 NA intron (NR_033344, intron 4 of 16) MER102c|DNA|hAT-Charlie -37188 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 114.333-42 chr15 56324694 56324882 + 1.16667 NA Intergenic LTR82B|LTR|ERVL -40636 NM_198524 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 233.334-8 chr8 142108758 142109172 + 1.16667 NA Intergenic Intergenic -67374 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 277-14 chr5 111245498 111245824 + 1.16667 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 21277 NM_001323377 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 261.167-2 chr11 24376725 24377137 + 1.16667 NA Intergenic MER5A|DNA|hAT-Charlie -120122 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 178.167-28 chr2 198826897 198827075 + 1.16667 NA Intergenic Intergenic -451889 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 288-18 chr9 1071098 1071508 + 1.16667 NA Intergenic Intergenic 19816 NM_001370532 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 263 chr10 19410699 19411089 + 1.16667 NA intron (NM_001142308, intron 28 of 39) intron (NM_001142308, intron 28 of 39) 317656 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 148.667-28 chr18 28296834 28297179 + 1.16667 NA Intergenic L1PA4|LINE|L1 -119876 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 257.001-2 chr11 46540766 46541149 + 1.16667 NA intron (NM_001267782, intron 8 of 19) intron (NM_001267782, intron 8 of 19) 46487 NR_160027 55626 Hs.654644 NM_017749 ENSG00000110497 AMBRA1 DCAF3|WDR94 autophagy and beclin 1 regulator 1 protein-coding 178.833-4 chr1 95408420 95408724 + 1.16667 NA Intergenic Intergenic -56465 NR_146486 101928169 NR_146486 LINC01650 - long intergenic non-protein coding RNA 1650 ncRNA 262.167-4 chr11 76527865 76528260 + 1.16667 NA intron (NM_001300942, intron 14 of 21) intron (NM_001300942, intron 14 of 21) 83037 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 311.501 chr11 48665374 48665690 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr 176739 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 138.5-69 chr6 163771110 163771306 + 1.16667 NA Intergenic LTR40A1|LTR|ERVL -99724 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 236.167-18 chr9 71630953 71631228 + 1.16667 NA Intergenic Intergenic 137423 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 183.667-19 chr11 111227044 111227227 + 1.16667 NA Intergenic Intergenic -18590 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 184.833-5 chr12 69756224 69756635 + 1.16667 NA exon (NM_175623, exon 3 of 11) exon (NM_175623, exon 3 of 11) 17048 NR_103520 117177 Hs.258209 NM_022456 ENSG00000127328 RAB3IP RABIN3|RABIN8 RAB3A interacting protein protein-coding 256.333-23 chr7 68002071 68002414 + 1.16667 NA Intergenic Intergenic -18011 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 171.5-32 chr2 95073874 95074195 + 1.16667 NA Intergenic Intergenic 47523 NM_001321995 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 206.334-8 chr5 83230416 83230817 + 1.16667 NA intron (NM_001318012, intron 6 of 7) intron (NM_001318012, intron 6 of 7) 153069 NM_001318012 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 199.5-5 chr10 119232841 119233094 + 1.16667 NA intron (NM_005308, intron 1 of 15) L1MA5A|LINE|L1 25396 NM_005308 2869 Hs.524625 NM_005308 ENSG00000198873 GRK5 FP2025|GPRK5 G protein-coupled receptor kinase 5 protein-coding 140.333-46 chr3 36144798 36145058 + 1.16667 NA Intergenic Intergenic -235559 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 502.667 chr2 71504235 71505167 + 1.16667 NA intron (NM_001130985, intron 4 of 54) intron (NM_001130985, intron 4 of 54) 38002 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 221.833-7 chr18 5458129 5458513 + 1.16667 NA intron (NM_001281535, intron 5 of 21) intron (NM_001281535, intron 5 of 21) 82235 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 224-34 chr6 154230914 154231348 + 1.16667 NA intron (NM_015553, intron 5 of 11) Tigger19b|DNA|TcMar-Tigger 98950 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 284.667 chr10 62796059 62796376 + 1.16667 NA Intergenic MER50|LTR|ERV1 -8503 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 315.167-5 chr13 49232807 49233151 + 1.16667 NA Intergenic Intergenic 12641 NM_001507 2862 Hs.248126 NM_001507 ENSG00000102539 MLNR GPR38|MTLR1 motilin receptor protein-coding 218.834-7 chr4 36598760 36599120 + 1.16667 NA intron (NR_149124, intron 2 of 4) intron (NR_149124, intron 2 of 4) 42960 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 226.5-37 chr8 137324170 137324386 + 1.16667 NA Intergenic Intergenic 89310 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 257-18 chrX 144037363 144037723 + 1.16667 NA Intergenic Intergenic 153472 NM_001012989 389898 Hs.585177 NM_001012989 ENSG00000276380 UBE2NL Li174 ubiquitin conjugating enzyme E2 N like (gene/pseudogene) protein-coding 376.5-2 chr1 186991080 186992074 + 1.16667 NA Intergenic L1MC4a|LINE|L1 -101265 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 193-6 chr1 246315397 246315668 + 1.16667 NA intron (NM_022743, intron 5 of 11) L3|LINE|CR1 101880 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 226-16 chr4 90927386 90927664 + 1.16667 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 692494 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 192.333-40 chr4 178044920 178045121 + 1.16667 NA Intergenic Intergenic -137084 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 123.833-67 chr8 112021772 112021904 + 1.16667 NA Intergenic L1MD|LINE|L1 -621655 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 172.5-36 chr3 69698423 69698576 + 1.16667 NA Intergenic Intergenic -40965 NM_001354605 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 209.667-41 chrX 64787223 64787430 + 1.16667 NA Intergenic L1MA4A|LINE|L1 189124 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 206.334-4 chr13 109427079 109427365 + 1.16667 NA Intergenic Intergenic 26526 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 286.334-6 chr4 173870383 173870640 + 1.16667 NA Intergenic Intergenic -26762 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 231.5-17 chr4 59280747 59281215 + 1.16667 NA Intergenic Intergenic 267408 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 297.334-3 chr9 30569700 30570196 + 1.16667 NA Intergenic Intergenic -161494 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 361.334 chr11 4008523 4009047 + 1.16667 NA intron (NM_001277962, intron 2 of 12) MER6A|DNA|TcMar-Tigger -85900 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 442-3 chr14 67988550 67989272 + 1.16667 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 165319 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 234.834 chr1 85889497 85889794 + 1.16667 NA intron (NM_152890, intron 31 of 59) intron (NM_152890, intron 31 of 59) -181212 NM_001170670 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 165.334 chr10 104649781 104650004 + 1.16667 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) 8602 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 276.167-12 chr5 145362131 145362515 + 1.16667 NA Intergenic L2a|LINE|L2 473019 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 273.501-3 chr7 98680199 98680531 + 1.16667 NA Intergenic Charlie5|DNA|hAT-Charlie 63080 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 197.333-42 chr4 79843404 79843621 + 1.16667 NA intron (NR_026555, intron 1 of 1) L1PA3|LINE|L1 16041 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 317.167-4 chr11 107890345 107890918 + 1.16667 NA Intergenic Intergenic -31844 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 321-8 chr22 32698160 32698630 + 1.16667 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -102421 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 168-69 chr6 145734264 145734489 + 1.16667 NA promoter-TSS (NR_038246) promoter-TSS (NR_038246) -493 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 175.667-46 chr4 59245844 59246159 + 1.16667 NA Intergenic Intergenic 232428 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 179.834 chr1 117771729 117771906 + 1.16667 NA Intergenic L1M3a|LINE|L1 157804 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 243.167-17 chr7 106647218 106647736 + 1.16667 NA Intergenic L1ME4a|LINE|L1 13681 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 175-62 chr8 131006373 131006611 + 1.16667 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 34417 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 274.667-10 chr5 42461187 42461496 + 1.16667 NA intron (NM_001242401, intron 1 of 10) intron (NM_001242401, intron 1 of 10) 36360 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 203.167-40 chrX 68681514 68681758 + 1.16667 NA intron (NM_014725, intron 2 of 13) intron (NM_014725, intron 2 of 13) -12003 NM_001142504 9754 Hs.95140 NM_014725 ENSG00000130052 STARD8 ARHGAP38|DLC3|STARTGAP3 StAR related lipid transfer domain containing 8 protein-coding 196.167-37 chrX 96415243 96415424 + 1.16667 NA Intergenic Intergenic -77431 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 273.667-19 chr6 158678356 158678799 + 1.16667 NA intron (NM_001242394, intron 5 of 17) intron (NM_001242394, intron 5 of 17) 15174 NM_001318745 94120 Hs.436977 NM_001009991 ENSG00000164674 SYTL3 SLP3 synaptotagmin like 3 protein-coding 290.834 chr11 12530140 12530426 + 1.16667 NA 3' UTR (NM_018222, exon 13 of 13) 3' UTR (NM_018222, exon 13 of 13) -144138 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 290.5-9 chr18 7320672 7321077 + 1.16667 NA Intergenic Intergenic 89770 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 143.667-47 chr16 60176958 60177270 + 1.16667 NA Intergenic LTR16A2|LTR|ERVL 182679 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 201.5-34 chr7 6568045 6568307 + 1.16667 NA Intergenic MamGypLTR2c|LTR|Gypsy -9258 NM_001134387 55146 Hs.5268 NM_018106 ENSG00000136247 ZDHHC4 ZNF374 zinc finger DHHC-type containing 4 protein-coding 119.167-84 chr6 42534670 42534780 + 1.16667 NA Intergenic MER5B|DNA|hAT-Charlie -29297 NM_001363705 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 145.834 chr15 88187295 88187582 + 1.16667 NA intron (NM_001007156, intron 3 of 15) intron (NM_001007156, intron 3 of 15) 18536 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 225.667-30 chr7 66787473 66787722 + 1.16667 NA intron (NM_001367725, intron 6 of 10) AluSz6|SINE|Alu 31715 NM_001287061 27342 Hs.530053 NM_014504 ENSG00000154710 RABGEF1 RABEX5|RAP1|rabex-5 RAB guanine nucleotide exchange factor 1 protein-coding 122.667-48 chr20 4769676 4769822 + 1.16667 NA Intergenic Intergenic -29081 NR_024267 149830 Hs.126516 NM_177549 ENSG00000180259 PRNT M8 prion locus lncRNA, testis expressed ncRNA 157.833-17 chr12 116227605 116227870 + 1.16667 NA intron (NM_015335, intron 2 of 30) Tigger1|DNA|TcMar-Tigger 49449 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 121.834-5 chr5 26076829 26076935 + 1.16667 NA Intergenic Intergenic 885929 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 198.167-41 chrUn_KI270438v1 94939 95500 + 1.16667 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 188.167-34 chr4 85862568 85862846 + 1.16667 NA intron (NM_001287805, intron 1 of 7) L2a|LINE|L2 34770 NM_001287805 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 188.667-32 chr22 25554092 25554395 + 1.16667 NA Intergenic Intergenic -10432 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 252.833-8 chr4 31250341 31250703 + 1.16667 NA Intergenic L1MA4|LINE|L1 79378 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 356.167-2 chr7 104062054 104062480 + 1.16667 NA Intergenic AluJb|SINE|Alu -72609 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 433.667-2 chr5 37165523 37166222 + 1.16667 NA intron (NM_023073, intron 35 of 51) intron (NM_023073, intron 35 of 51) -83174 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 304.667 chr1 109877019 109877612 + 1.16667 NA Intergenic Intergenic -33534 NM_172210 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 277.001 chr2 225738316 225738852 + 1.16667 NA Intergenic Intergenic 337698 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 339.167-2 chr17 44632020 44632419 + 1.16667 NA Intergenic Intergenic 18130 NR_110661 101927017 Hs.560554 NR_110661 ENSG00000266979 LINC01180 - long intergenic non-protein coding RNA 1180 ncRNA 147.333-74 chr6 115599777 115600047 + 1.16667 NA Intergenic Intergenic 43923 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 294.5-7 chr2 28178792 28179236 + 1.16667 NA intron (NR_120504, intron 1 of 2) L1MA4A|LINE|L1 27947 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 243.5-14 chr2 65110561 65110884 + 1.16667 NA intron (NM_015543, intron 1 of 3) AluJr|SINE|Alu 19384 NM_004161 5861 Hs.310645 NM_004161 ENSG00000138069 RAB1A RAB1|YPT1 RAB1A, member RAS oncogene family protein-coding 290.167-9 chr4 171480278 171480881 + 1.16667 NA Intergenic Intergenic 158184 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 286.167-15 chr9 132349186 132349571 + 1.16667 NA exon (NM_001351528, exon 3 of 27) exon (NM_001351528, exon 3 of 27) 5478 NM_001351527 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 295.834 chr12 95027847 95028133 + 1.16667 NA intron (NM_003297, intron 12 of 13) L1MB7|LINE|L1 -24277 NM_001258338 55967 Hs.506374 NM_018838 ENSG00000184752 NDUFA12 B17.2|DAP13|MC1DN23 NADH:ubiquinone oxidoreductase subunit A12 protein-coding 170.833-10 chr13 109242811 109243027 + 1.16667 NA Intergenic Intergenic -75616 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 255.334-4 chr6 166090310 166090618 + 1.16667 NA Intergenic AluSx|SINE|Alu -7256 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 221.834-3 chr4 169903535 169903785 + 1.16667 NA Intergenic MIRb|SINE|MIR 72242 NR_037878 100506085 Hs.649173 NR_037878 ENSG00000248319 LINC02275 - long intergenic non-protein coding RNA 2275 ncRNA 264.167-14 chr2 235857822 235858161 + 1.16667 NA intron (NM_001037131, intron 9 of 17) intron (NM_001037131, intron 9 of 17) 310395 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 139.167-30 chr16 78883617 78883840 + 1.16667 NA intron (NM_001291997, intron 7 of 7) AluSz6|SINE|Alu 717009 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 234.834-5 chr18 11235751 11236061 + 1.16667 NA Intergenic Intergenic -87144 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 313.667-11 chr22 28291733 28292122 + 1.16667 NA intron (NM_001145418, intron 5 of 22) L1ME4a|LINE|L1 -167942 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 250.667-7 chr3 86112930 86113206 + 1.16667 NA Intergenic THE1B-int|LTR|ERVL-MaLR -285018 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 138.334-6 chr2 219929278 219929473 + 1.16667 NA Intergenic MIRc|SINE|MIR -22810 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 234.667-29 chr5 159204904 159205175 + 1.16667 NA intron (NM_001199380, intron 1 of 10) MER131|DNA?|DNA? 2609 NM_001199382 153830 Hs.349306 NM_144726 ENSG00000145860 RNF145 - ring finger protein 145 protein-coding 202.5-3 chr11 36502458 36502784 + 1.16667 NA intron (NM_145803, intron 1 of 7) intron (NM_145803, intron 1 of 7) 7651 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 147.334-4 chr14 53098979 53099138 + 1.16667 NA intron (NM_030637, intron 2 of 11) L1MEf|LINE|L1 54265 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 137.5-40 chr18 72605309 72605486 + 1.16667 NA Intergenic Intergenic -61055 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 322.834 chr10 110817613 110818022 + 1.16667 NA intron (NM_001134363, intron 9 of 13) L2c|LINE|L2 53087 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 127-26 chr13 96196795 96197003 + 1.16667 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 106060 NM_153456 266722 Hs.171001 NM_153456 ENSG00000185352 HS6ST3 HS6ST-3 heparan sulfate 6-O-sulfotransferase 3 protein-coding 240.834-2 chr10 43142617 43142843 + 1.16667 NA intron (NM_018590, intron 1 of 7) L1M5|LINE|L1 4285 NM_018590 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 218.5-25 chr5 40854331 40854564 + 1.16667 NA 3' UTR (NM_032587, exon 3 of 3) 3' UTR (NM_032587, exon 3 of 3) 13080 NM_032587 84674 Hs.200242 NM_032587 ENSG00000132357 CARD6 CINCIN1 caspase recruitment domain family member 6 protein-coding 125.167-2 chr1 81086355 81086476 + 1.16667 NA Intergenic Intergenic -219777 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 205.334-5 chr2 65511860 65512043 + 1.16667 NA Intergenic Intergenic -79352 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 166.834-2 chr9 28141818 28142068 + 1.16667 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -568077 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 210.667-30 chr21 29578055 29578292 + 1.16667 NA intron (NM_000830, intron 13 of 16) intron (NM_000830, intron 13 of 16) -17867 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 119.334-3 chr2 30858054 30858217 + 1.16667 NA Intergenic L1MA3|LINE|L1 -50689 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 176.5-29 chr2 33098093 33098426 + 1.16667 NA intron (NM_206943, intron 3 of 33) L1ME3Cz|LINE|L1 -36338 NM_001166264 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 165.5-8 chr11 17715391 17715857 + 1.16667 NA Intergenic Charlie15b|DNA|hAT-Charlie -3947 NM_002478 4654 Hs.181768 NM_002478 ENSG00000129152 MYOD1 MYF3|MYOD|PUM|bHLHc1 myogenic differentiation 1 protein-coding 160.5-44 chr5 33176358 33176593 + 1.16667 NA Intergenic L2a|LINE|L2 -53260 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 245.834-3 chr14 28708373 28708731 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 56767 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 224.501 chr1 44890253 44890492 + 1.16667 NA intron (NM_001166588, intron 6 of 9) MER41-int|LTR|ERV1 -47119 NM_003738 8643 Hs.591497 NM_003738 ENSG00000117425 PTCH2 PTC2 patched 2 protein-coding 176.5-52 chr4 57243763 57243950 + 1.16667 NA Intergenic Intergenic -133471 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 160.167-16 chr14 60874029 60874190 + 1.16667 NA intron (NM_002431, intron 6 of 7) L1ME4a|LINE|L1 106970 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 153.167-61 chr8 117160890 117161117 + 1.16667 NA intron (NM_173851, intron 4 of 7) intron (NM_173851, intron 4 of 7) 26008 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 157.833-70 chr8 132759155 132759333 + 1.16667 NA intron (NM_144649, intron 1 of 9) intron (NM_144649, intron 1 of 9) 1338 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 288.001-2 chr8 79478770 79479044 + 1.16667 NA Intergenic Intergenic -132210 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 324.001 chr14 32642090 32642458 + 1.16667 NA intron (NM_004274, intron 7 of 13) intron (NM_004274, intron 7 of 13) -296605 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 170.667-42 chr3 114520449 114520740 + 1.16667 NA TTS (NR_121661) TTS (NR_121661) 67001 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 168.667-79 chr8 72914502 72914757 + 1.16667 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -94235 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 410.334-2 chr7 119989458 119989958 + 1.16667 NA Intergenic L1MDa|LINE|L1 -82333 NR_131961 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 191.334 chr10 76697320 76697635 + 1.16667 NA Intergenic Intergenic -190567 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 156.167-23 chr14 47310471 47310618 + 1.16667 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 32702 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 205.5-16 chr18 34939778 34940005 + 1.16667 NA Intergenic L1ME1|LINE|L1 -37037 NM_001143826 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 230.833-6 chr19 2991298 2991638 + 1.16667 NA intron (NM_001143986, intron 13 of 16) intron (NM_001143986, intron 13 of 16) 13904 NM_024760 79816 Hs.334507 NM_024760 ENSG00000104953 TLE6 GRG6|PREMBL TLE family member 6, subcortical maternal complex member protein-coding 318.334-5 chr4 142495092 142495438 + 1.16667 NA intron (NM_003866, intron 2 of 26) intron (NM_003866, intron 2 of 26) 351270 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 139.667-66 chr3 143570420 143570571 + 1.16667 NA intron (NM_173653, intron 8 of 15) L1ME4a|LINE|L1 228249 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 270.834-2 chr11 113809479 113810123 + 1.16667 NA intron (NM_001346268, intron 12 of 20) AluSz|SINE|Alu 30005 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 366.167-3 chr7 24696766 24697345 + 1.16667 NA Intergenic MLT1E2|LTR|ERVL-MaLR 60409 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 178.834-3 chr22 40542892 40543074 + 1.16667 NA intron (NM_020831, intron 3 of 14) intron (NM_020831, intron 3 of 14) -9156 NM_001318139 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 171.667-88 chr9 72621766 72621951 + 1.16667 NA intron (NM_138691, intron 3 of 23) L1M5|LINE|L1 100057 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 244.5-21 chr5 93006132 93006462 + 1.16667 NA Intergenic Intergenic 565046 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 154.5-11 chr11 80919977 80920202 + 1.16667 NA Intergenic Intergenic -157286 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 183.167-25 chr2 61736929 61737194 + 1.16667 NA Intergenic Intergenic 116999 NM_032180 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 334.5-14 chr9 92030706 92031301 + 1.16667 NA TTS (NM_006415) TTS (NM_006415) -80775 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 194.167-18 chr22 27292404 27292745 + 1.16667 NA Intergenic Intergenic -18077 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 192.667-56 chr8 113431559 113431796 + 1.16667 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) 5262 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 204.5-31 chr5 98823127 98823458 + 1.16667 NA Intergenic Charlie25|DNA|hAT-Charlie 49629 NM_001366508 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 233.167-9 chr14 57764184 57764404 + 1.16667 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 100705 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 170.334-8 chr4 28806804 28806989 + 1.16667 NA Intergenic Intergenic -12686 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 180.333-58 chr8 118267088 118267369 + 1.16667 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -155409 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 207.667-34 chr4 89891867 89892305 + 1.16667 NA intron (NM_001371403, intron 1 of 8) intron (NM_001371403, intron 1 of 8) -2768 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 289.834-4 chr16 54076172 54076585 + 1.16667 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) 36985 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 224-30 chr4 38931769 38932081 + 1.16667 NA intron (NM_001350633, intron 9 of 12) intron (NM_001350633, intron 9 of 12) 63893 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 191.5 chr1 33227112 33227293 + 1.16667 NA Intergenic L1MB7|LINE|L1 -29290 NM_152493 149076 Hs.743358 NM_152493 ENSG00000160094 ZNF362 RN|lin-29 zinc finger protein 362 protein-coding 115.834-2 chr1 213042258 213042448 + 1.16667 NA Intergenic L1M4|LINE|L1 -8880 NM_001349662 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 200.167-48 chr9 115795404 115795586 + 1.16667 NA Intergenic HAL1|LINE|L1 -51256 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 143-9 chr1 236964778 236964960 + 1.16667 NA Intergenic L1MEi|LINE|L1 39572 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 216-10 chr16 10475887 10476245 + 1.16667 NA intron (NM_024997, intron 10 of 11) LTR106_Mam|LTR|LTR 52132 NR_149081 106144584 Hs.531561 NR_149081 ENSG00000260468 LINC01290 - long intergenic non-protein coding RNA 1290 ncRNA 179.167-25 chr2 52344313 52344847 + 1.16667 NA intron (NR_135237, intron 8 of 10) MIRb|SINE|MIR -26068 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 274.334-2 chr14 39703790 39704103 + 1.16667 NA Intergenic L1PB3|LINE|L1 -271446 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 403.834 chr5 77641981 77642581 + 1.16667 NA Intergenic Intergenic -3584 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 133.334-8 chr7 43366259 43366446 + 1.16667 NA intron (NM_001287059, intron 5 of 27) L4_A_Mam|LINE|RTE-X 156190 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 139.834-2 chr2 212784594 212784742 + 1.16667 NA Intergenic Intergenic -10663 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 126.334-9 chr5 162039350 162039510 + 1.16667 NA Intergenic Intergenic -28212 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 299.333-5 chr21 37139958 37140522 + 1.16667 NA intron (NM_003316, intron 19 of 45) intron (NM_003316, intron 19 of 45) 53686 NR_046651 100874006 Hs.570411 NR_046651 ENSG00000228677 TTC3-AS1 - TTC3 antisense RNA 1 ncRNA 310.167-4 chr2 153931477 153931835 + 1.16667 NA intron (NM_052917, intron 2 of 12) L1PA15|LINE|L1 -12738 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 242.5 chr11 78548860 78549302 + 1.16667 NA intron (NR_120566, intron 2 of 3) L1M4b|LINE|L1 15905 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 200.167-20 chr17 59477668 59477982 + 1.16667 NA intron (NR_110813, intron 2 of 2) intron (NR_110813, intron 2 of 2) 49032 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 192.5-14 chr15 23970872 23971180 + 1.16667 NA Intergenic Intergenic -4121 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 251.834 chr1 91258288 91258951 + 1.16667 NA Intergenic L1PREC2|LINE|L1 146218 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 300-7 chr3 33772018 33772380 + 1.16667 NA Intergenic Intergenic -26372 NM_001162429 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 229.333-15 chr2 72761393 72761756 + 1.16667 NA intron (NR_135774, intron 1 of 19) intron (NR_135774, intron 1 of 19) 64459 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 202.001 chr16 70808258 70808629 + 1.16667 NA intron (NM_001270974, intron 85 of 85) MLT1I|LTR|ERVL-MaLR -7285 NM_001351157 55697 Hs.445061 NM_018052 ENSG00000103043 VAC14 ArPIKfyve|TAX1BP2|TRX VAC14 component of PIKFYVE complex protein-coding 230.5-12 chr4 26007295 26007716 + 1.16667 NA Intergenic L1PA5|LINE|L1 93313 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 166.5-33 chr2 188269544 188269758 + 1.16667 NA intron (NR_126396, intron 1 of 2) intron (NR_126396, intron 1 of 2) 18040 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 141.167-38 chr2 40919396 40919551 + 1.16667 NA Intergenic MER58B|DNA|hAT-Charlie -407038 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 253.667-10 chr3 61721672 61722460 + 1.16667 NA intron (NM_002841, intron 1 of 29) MSTD|LTR|ERVL-MaLR 160495 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 227.834 chr10 58016416 58016622 + 1.16667 NA Intergenic L1MA9|LINE|L1 251375 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 120.834-7 chr8 136365260 136365397 + 1.16667 NA Intergenic ERVL-E-int|LTR|ERVL -165470 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 200.5-5 chr11 111506783 111506994 + 1.16667 NA intron (NM_001367974, intron 1 of 4) intron (NM_001367974, intron 1 of 4) -3714 NR_147706 728196 Hs.363156 NR_147706 ENSG00000286028 LOC728196 - uncharacterized LOC728196 ncRNA 115.667-122 chr9 5194012 5194207 + 1.16667 NA Intergenic Intergenic -8470 NM_007179 11172 Hs.632648 NM_007179 ENSG00000120210 INSL6 RIF1 insulin like 6 protein-coding 136.334-4 chr2 122851409 122851582 + 1.16667 NA Intergenic Intergenic 221986 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 141.834-3 chr15 63726614 63726858 + 1.16667 NA intron (NM_003922, intron 17 of 77) L1M5|LINE|L1 107212 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 252.5-2 chr1 43886997 43887254 + 1.16667 NA intron (NR_073018, intron 6 of 10) intron (NR_073018, intron 6 of 10) -46195 NM_057090 9048 Hs.632404 NM_003976 ENSG00000117407 ARTN ART|ENOVIN|EVN|NBN artemin protein-coding 184.667-18 chr14 49970813 49971008 + 1.16667 NA Intergenic Intergenic 4511 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 234.5-31 chr8 30081817 30082171 + 1.16667 NA intron (NM_016127, intron 1 of 5) intron (NM_016127, intron 1 of 5) 1070 NM_016127 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 138.334 chr1 103799482 103799648 + 1.16667 NA Intergenic MLT1A|LTR|ERVL-MaLR 49724 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 204-22 chr21 30215266 30215481 + 1.16667 NA exon (NM_199328, exon 1 of 1) exon (NM_199328, exon 1 of 1) 724 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 234.167-14 chr5 41296159 41296583 + 1.16667 NA Intergenic Intergenic -34902 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 231.667-9 chr13 72478498 72478718 + 1.16667 NA Intergenic L1MA8|LINE|L1 249021 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 207.833-3 chr1 100000638 100001032 + 1.16667 NA intron (NM_001271684, intron 3 of 5) L1M2|LINE|L1 30318 NM_001271685 23443 Hs.448979 NM_012243 ENSG00000117620 SLC35A3 AMRS solute carrier family 35 member A3 protein-coding 238.167-20 chr6 34893681 34894093 + 1.16667 NA intron (NM_015245, intron 1 of 23) Tigger15a|DNA|TcMar-Tigger 4632 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 184.167-32 chr3 123281240 123281515 + 1.16667 NA TTS (NM_001199642) TTS (NM_001199642) 79434 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 292.834-5 chr2 121400649 121401178 + 1.16667 NA intron (NM_015282, intron 27 of 38) intron (NM_015282, intron 27 of 38) -115711 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 210.167-26 chr7 5534622 5534942 + 1.16667 NA Intergenic Intergenic -4181 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 182.167-19 chr19 29889264 29889540 + 1.16667 NA Intergenic Intergenic -34255 NM_001252641 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 216.834-5 chr2 186240915 186241238 + 1.16667 NA Intergenic MER77B|LTR|ERVL -154759 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 142-67 chr4 20449594 20449829 + 1.16667 NA intron (NM_001289135, intron 4 of 35) intron (NM_001289135, intron 4 of 35) 57522 NR_037876 100505893 Hs.665305 NR_037876 ENSG00000248228 SLIT2-IT1 - SLIT2 intronic transcript 1 ncRNA 158.667-37 chr18 53215408 53215555 + 1.16667 NA intron (NM_005215, intron 11 of 28) intron (NM_005215, intron 11 of 28) -21620 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 158-25 chr2 133695194 133695415 + 1.16667 NA Intergenic L1M5|LINE|L1 -126841 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 183-10 chr14 85863632 85863839 + 1.16667 NA Intergenic Intergenic -70943 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 181.334-4 chr5 39376297 39376584 + 1.16667 NA intron (NM_001343, intron 12 of 14) intron (NM_001343, intron 12 of 14) -11945 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 180.334-5 chr2 137435284 137435498 + 1.16667 NA intron (NM_001316349, intron 14 of 27) intron (NM_001316349, intron 14 of 27) 492541 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 265.334-5 chr10 66066821 66067129 + 1.16667 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 495550 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 149.167-58 chr7 51498640 51498836 + 1.16667 NA Intergenic HAL1|LINE|L1 -105482 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 122.667-100 chr9 71313183 71313307 + 1.16667 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 133726 NM_001366141 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 200.667-55 chr9 79162357 79162666 + 1.16667 NA Intergenic Intergenic -16845 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 136.667-56 chr3 24988078 24988202 + 1.16667 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 158817 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 181.167-30 chr8 25513268 25513573 + 1.16667 NA Intergenic Intergenic 54187 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 147.667-31 chr2 33184395 33184596 + 1.16667 NA intron (NM_206943, intron 5 of 33) L2c|LINE|L2 49898 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 203-38 chr6 52155733 52156067 + 1.16667 NA Intergenic Intergenic -4877 NR_131248 101154644 Hs.582788 NR_131248 LINCMD1 LINC-MD1|MIR133BHG long intergenic non-protein coding RNA, muscle differentiation 1 ncRNA 382.501 chr10 17182722 17183090 + 1.16667 NA intron (NM_004412, intron 1 of 10) L1ME3G|LINE|L1 18766 NM_001351219 1787 Hs.351665 NM_004412 ENSG00000107614 TRDMT1 DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1 tRNA aspartic acid methyltransferase 1 protein-coding 164.167-60 chr8 99620065 99620321 + 1.16667 NA intron (NM_017890, intron 33 of 61) L4_B_Mam|LINE|RTE-X -83332 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 150.5-56 chr4 112884976 112885304 + 1.16667 NA intron (NM_001354271, intron 1 of 42) intron (NM_001354271, intron 1 of 42) 24153 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 148.334-6 chr3 80511952 80512153 + 1.16667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -252845 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 172.667-79 chr8 120219723 120220068 + 1.16667 NA intron (NM_021110, intron 14 of 47) Tigger15a|DNA|TcMar-Tigger 94793 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 211 chr1 64659680 64660281 + 1.16667 NA intron (NM_020925, intron 13 of 26) intron (NM_020925, intron 13 of 26) 80133 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 755.668 chr12 895269 896171 + 1.16667 NA intron (NM_001184985, intron 23 of 27) AluSz|SINE|Alu 37356 NM_001297420 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 305.501-2 chr2 83149730 83150088 + 1.16667 NA Intergenic LTR16A1|LTR|ERVL 293106 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 273.667-12 chr2 143332335 143332764 + 1.16667 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 203130 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 217.667-38 chr5 126218229 126218441 + 1.16667 NA Intergenic L1PREC2|LINE|L1 38758 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 259-20 chr5 15369988 15370343 + 1.16667 NA Intergenic L1MA9|LINE|L1 -103605 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 175.834-2 chr16 76686723 76687012 + 1.16667 NA Intergenic L1MCa|LINE|L1 51869 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 183.167-21 chr18 7579643 7579855 + 1.16667 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 12433 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 173.5-4 chr1 163634929 163635194 + 1.16667 NA Intergenic L1MCa|LINE|L1 -211870 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 297.167-5 chr4 44876883 44877390 + 1.16667 NA Intergenic Intergenic -150502 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 161-56 chr5 173863689 173863846 + 1.16667 NA Intergenic MIRb|SINE|MIR -24582 NM_001308189 80315 Hs.127126 NM_030627 ENSG00000113742 CPEB4 CPE-BP4|hCPEB-4 cytoplasmic polyadenylation element binding protein 4 protein-coding 187-11 chr14 76944991 76945199 + 1.16667 NA Intergenic Intergenic -14543 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 263.834-8 chr8 120371013 120371401 + 1.16667 NA exon (NM_021110, exon 48 of 48) exon (NM_021110, exon 48 of 48) 73943 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 148.834 chr14 46408666 46408835 + 1.16667 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -62609 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 216.334-2 chr10 73265159 73265461 + 1.16667 NA intron (NM_001367801, intron 26 of 27) AluY|SINE|Alu 12569 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 194.834-2 chr11 110975205 110975695 + 1.16667 NA Intergenic Intergenic 121868 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 200-8 chr11 46575691 46575965 + 1.16667 NA intron (NM_001267782, intron 1 of 19) MSTB2|LTR|ERVL-MaLR 11616 NR_160027 55626 Hs.654644 NM_017749 ENSG00000110497 AMBRA1 DCAF3|WDR94 autophagy and beclin 1 regulator 1 protein-coding 152.833-50 chr4 112000046 112000191 + 1.16667 NA Intergenic HAL1|LINE|L1 -145336 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 192.167-17 chr18 53898169 53898467 + 1.16667 NA Intergenic MLT1H|LTR|ERVL-MaLR -317259 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 282.001-2 chr9 1461429 1461722 + 1.16667 NA Intergenic Intergenic 410088 NM_001370532 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 127.667-50 chr2 220357026 220357178 + 1.16667 NA Intergenic Intergenic -450537 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 181.667-48 chr5 41402753 41402977 + 1.16667 NA intron (NM_001005473, intron 1 of 2) L1ME1|LINE|L1 107736 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 156.5-5 chr1 84022925 84023104 + 1.16667 NA Intergenic MER4-int|LTR|ERV1 -23882 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 163.334-9 chr8 130722971 130723162 + 1.16667 NA Intergenic L1PA8|LINE|L1 -279392 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 255.667-22 chr8 49538595 49538957 + 1.16667 NA Intergenic Intergenic -26596 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 154.5-21 chr14 50916515 50916724 + 1.16667 NA intron (NM_002863, intron 9 of 19) intron (NM_002863, intron 9 of 19) 27864 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 136.334 chr14 33276945 33277102 + 1.16667 NA intron (NM_173159, intron 3 of 11) L2a|LINE|L2 338144 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 254.5-11 chr5 28298205 28298568 + 1.16667 NA Intergenic Intergenic -10721 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 204.167-17 chr20 55243352 55243817 + 1.16667 NA Intergenic Intergenic -179459 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 147.333-60 chr3 180011997 180012286 + 1.16667 NA intron (NM_016559, intron 1 of 14) intron (NM_016559, intron 1 of 14) 24796 NM_001349404 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 185.333-31 chr2 154926574 154926858 + 1.16667 NA Intergenic Intergenic 228021 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 185.334 chr10 9257987 9258537 + 1.16667 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -17351 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 292.501-2 chr10 10872005 10872344 + 1.16667 NA intron (NM_001326328, intron 2 of 15) intron (NM_001326328, intron 2 of 15) 73449 NM_001326327 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 214.834-6 chr5 148708425 148708721 + 1.16667 NA Intergenic L1MB8|LINE|L1 -54046 NR_104445 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 128.334-7 chr2 153157642 153157896 + 1.16667 NA Intergenic Intergenic 320993 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 170.667-57 chr5 65266446 65266652 + 1.16667 NA intron (NR_135689, intron 13 of 25) intron (NR_135689, intron 13 of 25) 215371 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 143.5-63 chr5 46055002 46055219 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr -358730 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 242.5-8 chr2 95156226 95156729 + 1.16667 NA intron (NM_001318005, intron 2 of 4) MIR|SINE|MIR 3108 NM_001318005 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 166.334-5 chr5 128416301 128416497 + 1.16667 NA intron (NM_001999, intron 7 of 64) L1MA4A|LINE|L1 121846 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 200.333-14 chr16 80307809 80308150 + 1.16667 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -232755 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 152.334-2 chr10 25888298 25888543 + 1.16667 NA Intergenic Intergenic 45290 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 292.333-5 chr2 70084027 70084577 + 1.16667 NA intron (NR_033872, intron 2 of 10) intron (NR_033872, intron 2 of 10) 2713 NR_033872 400960 Hs.683864 NR_033872 ENSG00000179818 PCBP1-AS1 - PCBP1 antisense RNA 1 ncRNA 250.667-4 chr2 42950034 42950337 + 1.16667 NA Intergenic Intergenic 89358 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 189.5-43 chr4 45226870 45227064 + 1.16667 NA Intergenic Intergenic -500333 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 240.334-2 chr12 22646323 22646628 + 1.16667 NA intron (NM_018638, intron 2 of 7) intron (NM_018638, intron 2 of 7) 21304 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 170.167-44 chr4 120457890 120458337 + 1.16667 NA Intergenic MIR|SINE|MIR -391265 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 149.167-44 chr4 158592636 158592805 + 1.16667 NA intron (NR_045580, intron 2 of 17) intron (NR_045580, intron 2 of 17) 70838 NM_001253729 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 229.667-33 chr8 103705629 103705891 + 1.16667 NA intron (NM_001348497, intron 2 of 22) L1MA4|LINE|L1 -113460 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 115.667-93 chr5 33239446 33239599 + 1.16667 NA intron (NR_147008, intron 1 of 3) intron (NR_147008, intron 1 of 3) 9787 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 216-16 chr2 51068600 51068872 + 1.16667 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 36135 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 205.834-2 chr10 75294029 75294217 + 1.16667 NA intron (NR_120651, intron 1 of 3) intron (NR_120651, intron 1 of 3) -2260 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 126.833-42 chr22 26017339 26017529 + 1.16667 NA intron (NM_001318245, intron 42 of 43) intron (NM_001318245, intron 42 of 43) -152028 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 139.334-3 chr15 63548604 63548743 + 1.16667 NA intron (NM_006537, intron 3 of 14) AluJr|SINE|Alu 44080 NR_046341 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 189.5-35 chr22 40840695 40840991 + 1.16667 NA intron (NM_003932, intron 4 of 11) intron (NM_003932, intron 4 of 11) 15796 NM_003932 6767 Hs.712713 NM_003932 ENSG00000100380 ST13 AAG2|FAM10A1|FAM10A4|HIP|HOP|HSPABP|HSPABP1|P48|PRO0786|SNC6 ST13 Hsp70 interacting protein protein-coding 191.5-29 chr20 41626136 41626398 + 1.16667 NA Intergenic Intergenic -7890 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 236.001-3 chr8 77424098 77424517 + 1.16667 NA Intergenic L1M5|LINE|L1 -26390 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 291.667-15 chr2 105192175 105192616 + 1.16667 NA Intergenic Intergenic 48282 NR_136172 105373984 Hs.570237 NR_136172 ENSG00000226508 LINC01918 - long intergenic non-protein coding RNA 1918 ncRNA 140.167-47 chr4 61537663 61537836 + 1.16667 NA intron (NM_001371343, intron 4 of 23) L1PA17|LINE|L1 335577 NM_001371342 227-12 chr2 79837446 79837794 + 1.16667 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 28963 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 305.334 chr10 55289628 55290104 + 1.16667 NA intron (NM_001354404, intron 2 of 34) MSTD|LTR|ERVL-MaLR -309176 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 162.167-4 chr1 237660151 237660538 + 1.16667 NA intron (NM_001035, intron 55 of 104) intron (NM_001035, intron 55 of 104) 189225 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 253-11 chr18 11197586 11197912 + 1.16667 NA Intergenic L1MC|LINE|L1 -48987 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 302.667-5 chr10 103157123 103157608 + 1.16667 NA intron (NM_001351187, intron 3 of 21) L1MC4|LINE|L1 -3544 NM_001351193 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 188.834-5 chr8 112641988 112642172 + 1.16667 NA intron (NM_001363185, intron 18 of 66) (AT)n|Simple_repeat|Simple_repeat -1413 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 443.001 chr4 45958567 45959028 + 1.16667 NA Intergenic Intergenic 165257 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 211.5-24 chr4 154544916 154545257 + 1.16667 NA intron (NM_002669, intron 6 of 14) intron (NM_002669, intron 6 of 14) 5314 NM_002669 5356 Hs.249996 NM_002669 ENSG00000171566 PLRG1 Cwc1|PRL1|PRP46|PRPF46|TANGO4 pleiotropic regulator 1 protein-coding 255.5-13 chr22 47553767 47554107 + 1.16667 NA Intergenic Intergenic -66826 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 242.334 chr10 123811573 123811914 + 1.16667 NA intron (NM_198148, intron 4 of 13) L1ME3F|LINE|L1 80064 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 416.333 chr1 170224341 170225073 + 1.16667 NA intron (NR_146891, intron 1 of 4) intron (NR_146891, intron 1 of 4) 50328 NR_146891 105371609 Hs.508115 NR_146891 LINC01681 - long intergenic non-protein coding RNA 1681 ncRNA 126.333-77 chr3 168854032 168854281 + 1.16667 NA Intergenic L1MA4|LINE|L1 -47789 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 170.834-8 chr3 46200507 46200705 + 1.16667 NA Intergenic MIRb|SINE|MIR 7707 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 181-51 chr5 36887714 36887971 + 1.16667 NA intron (NM_015384, intron 1 of 45) L2|LINE|L2 11073 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 272-18 chr9 72919378 72919678 + 1.16667 NA intron (NM_000689, intron 7 of 12) intron (NM_000689, intron 7 of 12) 33525 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 236.833-7 chr18 63978917 63979338 + 1.16667 NA intron (NM_198833, intron 2 of 6) intron (NM_198833, intron 2 of 6) 9046 NM_001348368 5271 Hs.368077 NM_002640 ENSG00000166401 SERPINB8 C18orf53|CAP2|PI-8|PI8|PSS5 serpin family B member 8 protein-coding 148.834-2 chr8 132218522 132218721 + 1.16667 NA intron (NM_004519, intron 1 of 14) MIRb|SINE|MIR -113356 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 302.5-7 chr3 184028060 184028468 + 1.16667 NA Intergenic Intergenic -3280 NM_182537 200909 Hs.448004 NM_182537 ENSG00000186090 HTR3D 5HT3D 5-hydroxytryptamine receptor 3D protein-coding 169.334-5 chr7 117909006 117909208 + 1.16667 NA Intergenic MER58A|DNA|hAT-Charlie -35666 NM_001363351 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 378.667 chr21 24247389 24247993 + 1.16667 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat 73686 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 130.667-98 chr8 127103052 127103249 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -20929 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 201-4 chr1 48975207 48975569 + 1.16667 NA intron (NM_001323575, intron 5 of 12) ERVL-E-int|LTR|ERVL -198419 NM_001349795 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 148.333-12 chr10 49136488 49136721 + 1.16667 NA intron (NR_038973, intron 2 of 5) L1ME3G|LINE|L1 -2584 NM_001164484 170370 Hs.646291 NM_001164484 ENSG00000172538 FAM170B C10orf73 family with sequence similarity 170 member B protein-coding 214.501 chr9 71700274 71700601 + 1.16667 NA intron (NM_013390, intron 19 of 23) intron (NM_013390, intron 19 of 23) 68076 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 431.833 chr10 34277286 34277975 + 1.16667 NA intron (NM_001184789, intron 19 of 22) intron (NM_001184789, intron 19 of 22) -504950 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 255.333-2 chr1 236578144 236578599 + 1.16667 NA intron (NM_018072, intron 20 of 44) L1P4|LINE|L1 26145 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 324.5 chr12 4532121 4532600 + 1.16667 NA intron (NR_144382, intron 2 of 9) MER83|LTR|ERV1 6109 NM_020374 57102 Hs.302977 NM_020374 ENSG00000047621 C12orf4 - chromosome 12 open reading frame 4 protein-coding 152.167-52 chr4 113817595 113817811 + 1.16667 NA Intergenic L1MA6|LINE|L1 -55776 NM_172127 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 274.833-5 chr15 63802596 63802951 + 1.16667 NA intron (NM_003922, intron 1 of 77) intron (NM_003922, intron 1 of 77) 31175 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 370.167 chr10 95085713 95086117 + 1.16667 NA Intergenic L1MA2|LINE|L1 -16418 NM_001198855 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 286.501-2 chr14 62971351 62971635 + 1.16667 NA intron (NM_139318, intron 6 of 10) L1MC1|LINE|L1 73965 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 167.5-2 chr1 77559574 77559803 + 1.16667 NA 3' UTR (NM_174858, exon 14 of 14) 3' UTR (NM_174858, exon 14 of 14) 122970 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 117.334-2 chr2 55731559 55731686 + 1.16667 NA Intergenic MIR|SINE|MIR -37778 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 403.667 chr18 3167110 3167685 + 1.16667 NA intron (NM_019856, intron 9 of 36) AluSx|SINE|Alu 52571 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 162.333-53 chr4 104800650 104800917 + 1.16667 NA Intergenic L1MA3|LINE|L1 -305889 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 287.833-4 chr3 12019521 12019991 + 1.16667 NA intron (NM_133625, intron 1 of 12) MIRc|SINE|MIR 15365 NM_133625 6854 Hs.445503 NM_003178 ENSG00000157152 SYN2 SYNII synapsin II protein-coding 149.334-9 chr5 38066297 38066494 + 1.16667 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 40698 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 269.334 chr1 212734650 212734977 + 1.16667 NA 3' UTR (NM_001297736, exon 4 of 4) 3' UTR (NM_001297736, exon 4 of 4) -34973 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 138.334-2 chr13 106951246 106951427 + 1.16667 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 297456 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 263.167-6 chr2 212546735 212547108 + 1.16667 NA Intergenic Intergenic -8119 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 302.5-6 chr3 8210386 8210838 + 1.16667 NA Intergenic AluSx1|SINE|Alu -194305 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 167.833-25 chr18 61291646 61291923 + 1.16667 NA Intergenic Intergenic -41646 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 242.667-23 chr6 136541750 136542098 + 1.16667 NA intron (NM_001198617, intron 1 of 15) AluSz6|SINE|Alu 8895 NM_001198616 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 304.334-3 chr4 49021615 49022226 + 1.16667 NA intron (NM_001286791, intron 9 of 15) L1PB1|LINE|L1 35278 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 400.501 chr14 62614670 62615231 + 1.16667 NA Intergenic L1ME1|LINE|L1 430508 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 165-51 chr5 166069086 166069357 + 1.16667 NA Intergenic Intergenic 857149 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 273.167 chr1 206428747 206429096 + 1.16667 NA intron (NM_015326, intron 12 of 21) AluJr|SINE|Alu -41555 NM_014002 9641 Hs.321045 NM_014002 ENSG00000263528 IKBKE IKK-E|IKK-i|IKKE|IKKI inhibitor of nuclear factor kappa B kinase subunit epsilon protein-coding 249.5-34 chr8 129842211 129842639 + 1.16667 NA intron (NM_001353307, intron 13 of 13) intron (NM_001353307, intron 13 of 13) -55801 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 172.5-4 chr1 77792417 77792625 + 1.16667 NA intron (NM_198549, intron 2 of 15) LTR38|LTR|ERV1 12716 NM_001363584 374986 Hs.437755 NM_198549 ENSG00000180488 MIGA1 FAM73A mitoguardin 1 protein-coding 203-20 chr2 69332640 69332853 + 1.16667 NA intron (NM_002056, intron 14 of 18) intron (NM_002056, intron 14 of 18) 54481 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 135.667-67 chr3 6665596 6665789 + 1.16667 NA intron (NR_110123, intron 2 of 3) intron (NR_110123, intron 2 of 3) 139757 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 141-38 chr2 21349613 21349813 + 1.16667 NA Intergenic Intergenic 225727 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 319.834 chr3 8878195 8878546 + 1.16667 NA 3' UTR (NM_020165, exon 13 of 13) 3' UTR (NM_020165, exon 13 of 13) 85102 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 230.667-21 chr5 11681972 11682252 + 1.16667 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -93046 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 190.5-12 chr12 74451675 74451960 + 1.16667 NA Intergenic L1MC5|LINE|L1 -86018 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 206.333-4 chr11 33906609 33906939 + 1.16667 NA Intergenic Intergenic -14698 NM_005574 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 LMO-2|RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 158.167-48 chr7 46577594 46577870 + 1.16667 NA Intergenic Intergenic 119390 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 127.667-94 chr8 49120453 49120660 + 1.16667 NA Intergenic L1MD2|LINE|L1 48212 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 240.334-9 chr8 80242583 80242888 + 1.16667 NA Intergenic Intergenic 1346 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 222.334-4 chr3 64184943 64185217 + 1.16667 NA intron (NM_001370528, intron 2 of 7) intron (NM_001370528, intron 2 of 7) -2464 NR_046702 100874243 Hs.670840 NR_046702 ENSG00000226017 PRICKLE2-AS3 - PRICKLE2 antisense RNA 3 ncRNA 158.834-5 chr7 43719592 43719778 + 1.16667 NA intron (NM_001371314, intron 1 of 7) intron (NM_001371314, intron 1 of 7) 9838 NM_001371309 236.834-6 chr20 49281482 49281739 + 1.16667 NA TTS (NR_003030) TTS (NR_003030) 927 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 287.167-5 chr13 64281982 64282414 + 1.16667 NA Intergenic L1PA16|LINE|L1 -206187 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 177-74 chrX 14308015 14308366 + 1.16667 NA Intergenic Intergenic 63925 NR_110506 286480 Hs.567831 NR_110506 UBE2E4P UbcM2 ubiquitin conjugating enzyme E2 E4 pseudogene pseudo 271.834 chr10 90622890 90623226 + 1.16667 NA Intergenic MamRep605|LTR?|LTR? -82253 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 169.667-33 chr2 12074459 12074674 + 1.16667 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 67450 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 124.334-7 chr6 46154939 46155108 + 1.16667 NA Intergenic L1MD1|LINE|L1 15957 NM_001290072 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 162.667-64 chr5 55237296 55237571 + 1.16667 NA Intergenic Intergenic -3716 NR_125347 10309 Hs.3041 NM_021147 ENSG00000152669 CCNO CCNU|CILD29|UDG2 cyclin O protein-coding 326.333-4 chr21 26862283 26863017 + 1.16667 NA Intergenic Intergenic -17241 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 125.333-38 chr13 96174118 96174338 + 1.16667 NA intron (NM_153456, intron 1 of 1) HAL1|LINE|L1 83389 NM_153456 266722 Hs.171001 NM_153456 ENSG00000185352 HS6ST3 HS6ST-3 heparan sulfate 6-O-sulfotransferase 3 protein-coding 173.667-43 chr4 32417450 32417665 + 1.16667 NA Intergenic L1MA9|LINE|L1 66519 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 283.5-13 chr7 31786344 31786699 + 1.16667 NA 3' UTR (NM_001322058, exon 18 of 18) 3' UTR (NM_001322058, exon 18 of 18) 99306 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 141-5 chr1 218741144 218741293 + 1.16667 NA intron (NR_031644, intron 4 of 6) L1ME2z|LINE|L1 177293 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 174-21 chr14 50529086 50529328 + 1.16667 NA intron (NM_198794, intron 2 of 31) AluJb|SINE|Alu 3362 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 230.167-4 chr12 19794496 19794868 + 1.16667 NA Intergenic Intergenic -220003 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 270-7 chr20 41148962 41149441 + 1.16667 NA intron (NM_182811, intron 1 of 31) intron (NM_182811, intron 1 of 31) -11201 NR_109889 101927117 Hs.668593 NR_109889 ENSG00000226648 PLCG1-AS1 TOP1-AS1 PLCG1 antisense RNA 1 ncRNA 283.001 chr2 152833929 152834197 + 1.16667 NA Intergenic AluJb|SINE|Alu 115426 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 203-5 chr11 100188551 100188872 + 1.16667 NA intron (NM_001243270, intron 12 of 23) L1PA16|LINE|L1 -498577 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 279.667 chr1 151053225 151053482 + 1.16667 NA intron (NM_020239, intron 4 of 4) intron (NM_020239, intron 4 of 4) 5602 NM_017860 54964 Hs.549171 NM_017860 ENSG00000143443 C1orf56 MENT chromosome 1 open reading frame 56 protein-coding 184.334-5 chr8 120788923 120789248 + 1.16667 NA intron (NM_021021, intron 1 of 6) L1PB3|LINE|L1 22961 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 307.333-3 chr16 46717998 46718417 + 1.16667 NA intron (NM_182493, intron 9 of 12) MER106A|DNA|hAT-Charlie 28548 NM_014321 23594 Hs.49760 NM_014321 ENSG00000091651 ORC6 ORC6L origin recognition complex subunit 6 protein-coding 194.334-7 chr8 55389137 55389461 + 1.16667 NA intron (NM_052898, intron 2 of 2) MLT1C|LTR|ERVL-MaLR 66022 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 299.167 chr10 68783819 68784173 + 1.16667 NA intron (NR_104262, intron 18 of 23) AluY|SINE|Alu 28824 NR_003076 692211 NR_003076 ENSG00000283551 SNORD98 HBII-419 small nucleolar RNA, C/D box 98 snoRNA 200.167-19 chr16 47484797 47484989 + 1.16667 NA intron (NM_001031835, intron 2 of 31) intron (NM_001031835, intron 2 of 31) 23562 NM_001031835 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 117.5-12 chr12 66024616 66024746 + 1.16667 NA promoter-TSS (NR_106722) promoter-TSS (NR_106722) -955 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 320.334-2 chr7 114131511 114131821 + 1.16667 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 45339 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 208.834-12 chr7 105504620 105504906 + 1.16667 NA intron (NM_001318164, intron 4 of 15) intron (NM_001318164, intron 4 of 15) 3757 NM_001318163 54517 Hs.520619 NM_019042 ENSG00000091127 PUS7 IDDABS pseudouridine synthase 7 protein-coding 251.334-3 chr22 19402334 19402580 + 1.16667 NA intron (NM_003325, intron 5 of 24) L1M5|LINE|L1 29276 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 159.833-49 chr8 67528074 67528368 + 1.16667 NA intron (NM_020361, intron 2 of 10) L2c|LINE|L2 184387 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 401.834 chr10 58294274 58294675 + 1.16667 NA Intergenic Intergenic 25312 NM_018464 55847 Hs.370102 NM_018464 ENSG00000122873 CISD1 C10orf70|MDS029|ZCD1|mitoNEET CDGSH iron sulfur domain 1 protein-coding 227.167-16 chr2 56942203 56942531 + 1.16667 NA Intergenic L1M1|LINE|L1 -756597 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 186.833-37 chr5 41072475 41072870 + 1.16667 NA Intergenic Intergenic -1330 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 298.334-2 chr7 8232551 8232841 + 1.16667 NA exon (NM_001350821, exon 3 of 14) exon (NM_001350821, exon 3 of 14) 29356 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 153.667-30 chr17 7203996 7204153 + 1.16667 NA intron (NM_001321076, intron 2 of 18) intron (NM_001321076, intron 2 of 18) 1113 NM_001321076 1742 Hs.463928 NM_001365 ENSG00000132535 DLG4 PSD95|SAP-90|SAP90 discs large MAGUK scaffold protein 4 protein-coding 207-25 chr2 142377599 142377874 + 1.16667 NA Intergenic L1ME1|LINE|L1 -246035 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 132.167-25 chr17 29807295 29807497 + 1.16667 NA intron (NM_033389, intron 1 of 14) intron (NM_033389, intron 1 of 14) -45964 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 240.5-11 chr3 60788833 60789079 + 1.16667 NA intron (NR_148921, intron 4 of 4) Tigger19a|DNA|TcMar-Tigger -171086 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 138.833-31 chr18 42051331 42051553 + 1.16667 NA intron (NM_001308020, intron 20 of 23) (ATA)n|Simple_repeat|Simple_repeat 96208 NM_002647 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 122.5-31 chr14 49797744 49797886 + 1.16667 NA intron (NM_001301732, intron 24 of 31) MER6|DNA|TcMar-Tigger 29662 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 120.834-2 chr14 95180751 95180881 + 1.16667 NA TTS (NR_015415) TTS (NR_015415) -22806 NM_001291628 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 279.667-16 chr8 87546158 87546835 + 1.16667 NA Intergenic Intergenic 327519 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 368.334-2 chr6 40825716 40826168 + 1.16667 NA Intergenic AluSx|SINE|Alu 197338 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 265.334-6 chr13 21752965 21753495 + 1.16667 NA Intergenic Intergenic 82157 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 132.834 chr1 178219752 178219921 + 1.16667 NA intron (NM_170692, intron 1 of 17) MSTB|LTR|ERVL-MaLR -121615 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 386.834-3 chr4 35454260 35455097 + 1.16667 NA Intergenic L2c|LINE|L2 789261 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 391.667-4 chr7 105543366 105543991 + 1.16667 NA intron (NM_001346603, intron 4 of 11) intron (NM_001346603, intron 4 of 11) 11477 NM_021930 60561 Hs.531388 NM_021930 ENSG00000135249 RINT1 RINT-1 RAD50 interactor 1 protein-coding 220.501 chr14 21138641 21138839 + 1.16667 NA Intergenic L1ME3B|LINE|L1 17323 NM_001004731 390445 Hs.553768 NM_001004731 ENSG00000169327 OR5AU1 OR14-38 olfactory receptor family 5 subfamily AU member 1 protein-coding 178-9 chr11 24059623 24059863 + 1.16667 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -437310 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 129.333-14 chr11 28294983 28295143 + 1.16667 NA intron (NM_001297775, intron 5 of 6) intron (NM_001297775, intron 5 of 6) 182485 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 227.834-8 chr6 148025271 148025773 + 1.16667 NA Intergenic Intergenic -246806 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 181.667-14 chr15 63792664 63792909 + 1.16667 NA intron (NM_003922, intron 1 of 77) MER21B|LTR|ERVL 41162 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 282.667-14 chr6 50220952 50221288 + 1.16667 NA Intergenic Intergenic -171191 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 451.334-2 chr4 69086992 69087602 + 1.16667 NA intron (NM_001349568, intron 1 of 6) L1M1|LINE|L1 -9177 NM_001074 7364 Hs.654424 NM_001074 ENSG00000171234 UGT2B7 UDPGT 2B7|UDPGT 2B9|UDPGT2B7|UDPGTH2|UDPGTh-2|UGT2B9 UDP glucuronosyltransferase family 2 member B7 protein-coding 194.167-10 chr12 15256216 15256387 + 1.16667 NA Intergenic Intergenic -34884 NM_032918 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 361.334-3 chr2 171453105 171454115 + 1.16667 NA intron (NM_001164821, intron 6 of 11) intron (NM_001164821, intron 6 of 11) -18807 NM_024770 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 347.834-5 chr9 8406687 8407291 + 1.16667 NA intron (NM_130392, intron 20 of 30) intron (NM_130392, intron 20 of 30) 326957 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 188.334-5 chr15 47637018 47637196 + 1.16667 NA intron (NM_001198999, intron 4 of 19) MamTip3|DNA|hAT-Tip100 -80398 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 231.834-5 chr2 42518322 42518666 + 1.16667 NA intron (NM_001282755, intron 2 of 17) L1MC3|LINE|L1 23925 NM_001282755 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 171.834-8 chr8 111088989 111089215 + 1.16667 NA Intergenic L2c|LINE|L2 -61669 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 173-26 chr18 51206728 51206996 + 1.16667 NA Intergenic AluSx|SINE|Alu -9181 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 252.167-2 chr10 53556543 53556805 + 1.16667 NA Intergenic L1MCc|LINE|L1 -784974 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 195-37 chr4 90807242 90807662 + 1.16667 NA intron (NM_001145065, intron 7 of 10) intron (NM_001145065, intron 7 of 10) 572421 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 138.834-4 chr8 16736281 16736453 + 1.16667 NA Intergenic Intergenic 265978 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 223.334-8 chr5 99358609 99358930 + 1.16667 NA Intergenic L1MB1|LINE|L1 -175221 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 181.667-4 chr1 105460632 105460977 + 1.16667 NA Intergenic MER110-int|LTR|ERV1 158131 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 308.667-6 chr4 101816682 101817174 + 1.16667 NA intron (NM_001083907, intron 1 of 16) ERVL-E-int|LTR|ERVL 3086 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 149.333-52 chr2 116276190 116276405 + 1.16667 NA Intergenic L1MB1|LINE|L1 932482 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 209.667-14 chr15 67282616 67283105 + 1.16667 NA intron (NM_001322475, intron 3 of 17) intron (NM_001322475, intron 3 of 17) -27662 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 308.667-10 chr8 133907696 133908329 + 1.16667 NA Intergenic MSTD|LTR|ERVL-MaLR 21516 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 188.167-22 chr2 123537572 123537769 + 1.16667 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -464189 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 241.834-6 chr3 102862866 102863234 + 1.16667 NA Intergenic Intergenic 428035 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 193-23 chr2 22300273 22300519 + 1.16667 NA Intergenic Intergenic -236083 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 179.667-18 chr17 29910146 29910527 + 1.16667 NA intron (NM_001282129, intron 1 of 15) intron (NM_001282129, intron 1 of 15) -19567 NM_001145053 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 177.667-11 chr11 84507490 84507731 + 1.16667 NA intron (NM_001142699, intron 7 of 27) L1P4|LINE|L1 -190271 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 171.667-8 chr1 225483957 225484278 + 1.16667 NA Intergenic Intergenic -55262 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 182.5-15 chr16 73528688 73528977 + 1.16667 NA Intergenic MamSINE1|SINE|tRNA-RTE 142027 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 198-59 chr8 49933386 49933563 + 1.16667 NA intron (NR_135798, intron 1 of 15) L1MB7|LINE|L1 22067 NM_001321776 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 231.5-13 chr3 77744082 77744471 + 1.16667 NA Intergenic Intergenic 304687 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 242.5-21 chr8 60388860 60389192 + 1.16667 NA Intergenic Intergenic 24792 NR_103854 100505532 Hs.720321 NR_103854 LINC01301 - long intergenic non-protein coding RNA 1301 ncRNA 166.167-62 chr7 97431506 97431800 + 1.16667 NA Intergenic Intergenic -300433 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 235.5-31 chr7 39591739 39592084 + 1.16667 NA intron (NM_001282446, intron 2 of 2) L1MC1|LINE|L1 25507 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 188-54 chr6 63795527 63795764 + 1.16667 NA intron (NM_001292009, intron 37 of 43) intron (NM_001292009, intron 37 of 43) -11191 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 233.167-16 chr17 72105368 72105699 + 1.16667 NA intron (NR_103738, intron 2 of 6) intron (NR_103738, intron 2 of 6) 10483 NR_103738 400618 Hs.657374 NR_103737 ENSG00000234899 SOX9-AS1 - SOX9 antisense RNA 1 ncRNA 213-30 chr9 26607562 26607973 + 1.16667 NA Intergenic MER68B|LTR|ERVL 285035 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 288.001 chr6 54703477 54703768 + 1.16667 NA Intergenic AluYf1|SINE|Alu -143149 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 265.334-4 chr10 59889151 59889485 + 1.16667 NA intron (NM_005436, intron 1 of 8) intron (NM_005436, intron 1 of 8) 17238 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 180.834-4 chr22 20761798 20762025 + 1.16667 NA intron (NM_058004, intron 22 of 54) intron (NM_058004, intron 22 of 54) -12202 NM_000185 3053 Hs.474270 NM_000185 ENSG00000099937 SERPIND1 D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10 serpin family D member 1 protein-coding 118.834-9 chr3 100646772 100646915 + 1.16667 NA intron (NM_001308362, intron 4 of 9) intron (NM_001308362, intron 4 of 9) 11305 NM_001308362 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 232.333-8 chr12 108875936 108876197 + 1.16667 NA Intergenic MER49|LTR|ERV1 -4026 NM_001917 1610 Hs.113227 NM_001917 ENSG00000110887 DAO DAAO|DAMOX|OXDA D-amino acid oxidase protein-coding 159.834-8 chr9 99931824 99932035 + 1.16667 NA intron (NM_017919, intron 3 of 7) intron (NM_017919, intron 3 of 7) 25275 NM_017919 55014 Hs.704031 NM_017919 ENSG00000136874 STX17 - syntaxin 17 protein-coding 360.334-3 chr19 38529480 38529929 + 1.16667 NA intron (NM_001042723, intron 75 of 104) MER91B|DNA|hAT-Tip100 -66643 NR_134907 105372397 Hs.570011 NR_134907 ENSG00000267291 LOC105372397 - uncharacterized LOC105372397 ncRNA 226.667-32 chr7 38215589 38216145 + 1.16667 NA intron (NM_001363347, intron 5 of 8) intron (NM_001363347, intron 5 of 8) 37622 NM_001363340 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 142-68 chr4 60442892 60443039 + 1.16667 NA Intergenic L1MA8|LINE|L1 -479654 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 165.333-2 chr1 105224804 105225064 + 1.16667 NA Intergenic Intergenic 394001 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 126.167-13 chr10 74319977 74320151 + 1.16667 NA intron (NM_001369124, intron 4 of 9) L1M4|LINE|L1 143301 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 260.5-26 chr7 28980516 28980892 + 1.16667 NA intron (NR_038965, intron 1 of 4) intron (NR_038965, intron 1 of 4) 737 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 137.167-59 chr7 31687637 31687780 + 1.16667 NA intron (NM_001145123, intron 1 of 3) intron (NM_001145123, intron 1 of 3) 493 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 262.334 chr18 35363141 35363475 + 1.16667 NA Intergenic L1MB4|LINE|L1 14029 NM_001322291 252884 Hs.351005 NM_145756 ENSG00000186496 ZNF396 ZSCAN14 zinc finger protein 396 protein-coding 219.834-6 chr3 117095063 117095367 + 1.16667 NA Intergenic Intergenic 173784 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 182.334-4 chr16 76849657 76849846 + 1.16667 NA Intergenic Intergenic -19185 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 160.334-5 chr7 77463731 77463962 + 1.16667 NA Intergenic L2c|LINE|L2 -47497 NR_146938 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 261.667-33 chr8 33952539 33952892 + 1.16667 NA Intergenic Intergenic -352609 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 150.5-4 chr1 197438690 197438922 + 1.16667 NA intron (NM_001193640, intron 8 of 9) intron (NM_001193640, intron 8 of 9) 170554 NM_201253 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 227.167-33 chr9 98178108 98178529 + 1.16667 NA intron (NM_052820, intron 1 of 11) AluJr4|SINE|Alu -5426 NM_003389 7464 Hs.113094 NM_003389 ENSG00000106789 CORO2A CLIPINB|IR10|WDR2 coronin 2A protein-coding 143-47 chr3 99595907 99596136 + 1.16667 NA Intergenic Intergenic -42573 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 330-7 chr5 32948870 32949411 + 1.16667 NA intron (NR_033832, intron 2 of 5) intron (NR_033832, intron 2 of 5) 1697 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 377.834 chr5 60651605 60652127 + 1.16667 NA intron (NM_001145208, intron 2 of 9) MLT1G1-int|LTR|ERVL-MaLR 48300 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 146.334-4 chr2 59155882 59156062 + 1.16667 NA Intergenic Intergenic -61736 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 205.833-30 chr7 89556736 89557068 + 1.16667 NA Intergenic Intergenic -562498 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 144.833-24 chr16 73988759 73988986 + 1.16667 NA Intergenic L1PA16|LINE|L1 226649 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 334.167-4 chr9 24155937 24156416 + 1.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR -305575 NM_001351456 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 140.834-5 chr4 67732913 67733102 + 1.16667 NA Intergenic L2|LINE|L2 23079 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 172-26 chr16 35476875 35477318 + 1.16667 NA TTS (NR_026980) TTS (NR_026980) 3500 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 244.5-20 chr5 14035290 14035865 + 1.16667 NA Intergenic Intergenic -91097 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 208.334-4 chr3 27296397 27296584 + 1.16667 NA intron (NM_152534, intron 15 of 38) intron (NM_152534, intron 15 of 38) 72893 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 235.667-10 chr2 49950240 49950609 + 1.16667 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) 23779 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 182.667-51 chr6 39573493 39573728 + 1.16667 NA intron (NM_001289020, intron 10 of 21) intron (NM_001289020, intron 10 of 21) -142220 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 261.833-13 chr5 32381525 32381881 + 1.16667 NA intron (NM_016107, intron 15 of 19) intron (NM_016107, intron 15 of 19) 12772 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 224.834-3 chr3 136841775 136841991 + 1.16667 NA TTS (NR_110175) TTS (NR_110175) 20180 NR_110177 101927597 Hs.559587 NR_110175 NCK1-DT NCK1-AS1|SLC35G2-AS1 NCK1 divergent transcript ncRNA 293.834-4 chr9 104651698 104652071 + 1.16667 NA Intergenic Intergenic -33680 NM_001001956 286362 Hs.553682 NM_001001956 ENSG00000136839 OR13C9 OR37L|OR9-13 olfactory receptor family 13 subfamily C member 9 protein-coding 137.5-68 chr4 41676171 41676391 + 1.16667 NA intron (NM_001330789, intron 17 of 24) intron (NM_001330789, intron 17 of 24) 63379 NM_001330983 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 190.834-4 chr3 121246789 121246979 + 1.16667 NA intron (NM_001348343, intron 14 of 27) L1ME1|LINE|L1 197244 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 192-57 chr9 106048830 106049057 + 1.16667 NA Intergenic Intergenic 354402 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 183.5-4 chr10 43476221 43476476 + 1.16667 NA intron (NM_001355444, intron 3 of 3) intron (NM_001355444, intron 3 of 3) 39237 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 258.5-15 chr4 9872885 9873139 + 1.16667 NA intron (NM_001001290, intron 11 of 12) intron (NM_001001290, intron 11 of 12) 91378 NM_000798 1816 Hs.380681 NM_000798 ENSG00000169676 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 115.167-93 chr6 68897199 68897376 + 1.16667 NA intron (NM_001704, intron 3 of 31) AluJo|SINE|Alu 262005 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 163.333-33 chr18 13581172 13581479 + 1.16667 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -29789 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 228-29 chr6 118318168 118318436 + 1.16667 NA TTS (NM_001029858) TTS (NM_001029858) -183071 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 437.5-3 chr5 73257325 73257936 + 1.16667 NA Intergenic L1MC|LINE|L1 -55669 NR_134291 340090 Hs.434311 NR_134291 LOC340090 - uncharacterized LOC340090 ncRNA 236.5-13 chr13 75998255 75998593 + 1.16667 NA Intergenic L1M4|LINE|L1 -63292 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 179.667-10 chr11 129189055 129189435 + 1.16667 NA intron (NM_001142685, intron 1 of 21) MIRb|SINE|MIR 2953 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 176.167-34 chr5 19300393 19300591 + 1.16667 NA Intergenic MIRb|SINE|MIR 585780 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 254.334-8 chr8 85038464 85038858 + 1.16667 NA Intergenic Intergenic -68577 NM_001349637 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 164-78 chr8 125680778 125680949 + 1.16667 NA Intergenic L3|LINE|CR1 248654 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 197.833-36 chr8 85411122 85411540 + 1.16667 NA Intergenic L3|LINE|CR1 -27528 NM_005181 761 Hs.82129 NM_005181 ENSG00000164879 CA3 CAIII|Car3 carbonic anhydrase 3 protein-coding 118.667-63 chr2 175684821 175684966 + 1.16667 NA Intergenic Intergenic 317374 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 115.667-5 chr1 80342227 80342451 + 1.16667 NA Intergenic Intergenic -193416 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 130.833-45 chr3 135156876 135157102 + 1.16667 NA intron (NM_004441, intron 6 of 15) MIRb|SINE|MIR 361729 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 229-13 chr14 62259209 62259587 + 1.16667 NA Intergenic L1ME4c|LINE|L1 -119425 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 202.334-7 chr21 25318002 25318227 + 1.16667 NA Intergenic Intergenic 113587 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 231.333-32 chr8 89121044 89121464 + 1.16667 NA Intergenic Intergenic 636457 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 255.5-8 chr16 56057727 56058073 + 1.16667 NA Intergenic L1ME5|LINE|L1 -101869 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 203.167-28 chr3 132697000 132697333 + 1.16667 NA intron (NR_037804, intron 13 of 44) intron (NR_037804, intron 13 of 44) -24584 NR_002811 348808 Hs.586111 NR_002811 ENSG00000248724 NPHP3-AS1 NCRNA00119 NPHP3 antisense RNA 1 ncRNA 234.5-6 chr12 15162787 15163267 + 1.16667 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 11104 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 173.334-3 chr3 29237904 29238088 + 1.16667 NA Intergenic L1ME3|LINE|L1 42943 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 131.833-14 chr14 55646987 55647187 + 1.16667 NA intron (NR_073129, intron 20 of 45) intron (NR_073129, intron 20 of 45) 66880 NM_001271014 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 193.334-4 chr5 51102421 51102602 + 1.16667 NA Intergenic Intergenic -132324 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 134.334-5 chr5 125464073 125464203 + 1.16667 NA Intergenic L2b|LINE|L2 -29123 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 257.5-10 chr2 194096618 194096938 + 1.16667 NA Intergenic MER57B2|LTR|ERV1 -247491 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 307.5-8 chr21 28473831 28474223 + 1.16667 NA Intergenic Intergenic -65291 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 128.333-9 chr1 188000428 188000642 + 1.16667 NA Intergenic MER58A|DNA|hAT-Charlie 556907 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 191.167-6 chr14 81120479 81120819 + 1.16667 NA intron (NM_000369, intron 8 of 9) L1M3|LINE|L1 82185 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 232.167-17 chr20 37326533 37326841 + 1.16667 NA Intergenic MIR3|SINE|MIR -17998 NM_005417 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 181.167-21 chr5 5131958 5132136 + 1.16667 NA TTS (NR_109915) TTS (NR_109915) 8007 NR_109915 101929176 Hs.208717 NR_109915 CTD-2297D10.2 - uncharacterized LOC101929176 ncRNA 400.001-2 chr2 194866630 194867137 + 1.16667 NA Intergenic Intergenic 136288 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 168-29 chr2 103447719 103447948 + 1.16667 NA Intergenic Intergenic -463404 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 170.334-2 chr12 15709911 15710120 + 1.16667 NA intron (NM_004447, intron 1 of 20) MER1B|DNA|hAT-Charlie 79373 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 126.167-40 chr2 82105178 82105334 + 1.16667 NA Intergenic Intergenic -638310 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 212.334-4 chr3 197288843 197289139 + 1.16667 NA intron (NM_001366216, intron 3 of 23) MamRep137|DNA|TcMar-Tigger 4957 NR_039960 100616216 NR_039960 ENSG00000265850 MIR4797 - microRNA 4797 ncRNA 463.001 chr3 9447411 9447837 + 1.16667 NA intron (NM_001080517, intron 14 of 22) intron (NM_001080517, intron 14 of 22) 49924 NM_001080517 55209 Hs.288164 NM_018187 ENSG00000168137 SETD5 - SET domain containing 5 protein-coding 382.167-2 chr7 12508817 12509437 + 1.16667 NA intron (NR_136263, intron 1 of 3) MER1A|DNA|hAT-Charlie 4730 NR_136263 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 261.667-32 chr7 16842509 16842998 + 1.16667 NA Intergenic AluJb|SINE|Alu -37754 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 117.834-5 chrX 23607329 23607441 + 1.16667 NA Intergenic Intergenic -60108 NM_006406 10549 Hs.83383 NM_006406 ENSG00000123131 PRDX4 AOE37-2|AOE372|HEL-S-97n|PRX-4 peroxiredoxin 4 protein-coding 129.333-69 chr4 171187030 171187163 + 1.16667 NA TTS (NR_106730) TTS (NR_106730) 912 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 320.667-11 chr5 30030934 30031487 + 1.16667 NA Intergenic Intergenic 150650 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 304.5-5 chr2 109275141 109275481 + 1.16667 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) 38314 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 215.333-23 chr2 68688208 68688455 + 1.16667 NA Intergenic Intergenic 44743 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 232.167-19 chr3 183385962 183386233 + 1.16667 NA intron (NM_015078, intron 2 of 29) intron (NM_015078, intron 2 of 29) 42172 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 146.833-6 chr10 53986094 53986326 + 1.16667 NA intron (NM_001354411, intron 22 of 34) L1MB1|LINE|L1 -500020 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 213.834-5 chr7 5757215 5757512 + 1.16667 NA intron (NM_207111, intron 2 of 16) L1MB5|LINE|L1 24300 NM_207116 54476 Hs.487458 NM_019011 ENSG00000011275 RNF216 CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN ring finger protein 216 protein-coding 244.667-10 chr16 48548005 48548234 + 1.16667 NA intron (NM_153029, intron 4 of 6) intron (NM_153029, intron 4 of 6) 62061 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 237.5-19 chr4 79425372 79425620 + 1.16667 NA Intergenic Intergenic -17268 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 192.834-5 chr4 7859898 7860174 + 1.16667 NA intron (NM_198595, intron 3 of 16) AluJb|SINE|Alu 12272 NM_001371090 222.5-7 chr16 26243141 26243560 + 1.16667 NA Intergenic L1MA1|LINE|L1 218113 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 209.334-6 chr9 9289644 9289961 + 1.16667 NA intron (NM_002839, intron 9 of 45) L1MA9|LINE|L1 431784 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 206.667-20 chr16 71372357 71372609 + 1.16667 NA intron (NM_001740, intron 2 of 10) Charlie24|DNA|hAT-Charlie 13760 NR_027910 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 130.167-19 chr14 20419472 20419609 + 1.16667 NA Intergenic MLT1H1|LTR|ERVL-MaLR -6039 NM_001319035 7011 Hs.508835 NM_007110 ENSG00000129566 TEP1 TLP1|TP1|TROVE1|VAULT2|p240 telomerase associated protein 1 protein-coding 158.667-64 chr4 100490992 100491175 + 1.16667 NA intron (NM_001159694, intron 1 of 10) L1M2|LINE|L1 26939 NM_016242 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 227.334-13 chr6 47515103 47515454 + 1.16667 NA intron (NM_012120, intron 2 of 17) intron (NM_012120, intron 2 of 17) 37489 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 238.667-4 chr12 88655078 88655639 + 1.16667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -74885 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 173.667-74 chr9 125618718 125619128 + 1.16667 NA intron (NM_001006619, intron 4 of 10) AluJb|SINE|Alu 88285 NM_001006617 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g MAPK associated protein 1 protein-coding 304-4 chr17 68850871 68851288 + 1.16667 NA Intergenic Intergenic 104313 NM_007168 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 225.5-42 chr6 83823723 83823939 + 1.16667 NA Intergenic Intergenic -29435 NM_001009994 134701 Hs.149454 NM_001009994 ENSG00000203877 RIPPLY2 C6orf159|SCDO6|dJ237I15.1 ripply transcriptional repressor 2 protein-coding 218.667-20 chr2 224012807 224013162 + 1.16667 NA intron (NM_006216, intron 1 of 8) intron (NM_006216, intron 1 of 8) 18494 NR_073116 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 299.5-5 chr16 82061343 82061734 + 1.16667 NA intron (NM_002153, intron 1 of 4) intron (NM_002153, intron 1 of 4) 26285 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 226.334-3 chr17 57733164 57733434 + 1.16667 NA Intergenic L1MB5|LINE|L1 12000 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 119.333-94 chr6 69830161 69830324 + 1.16667 NA Intergenic L3|LINE|CR1 -33232 NM_018368 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 332.5-7 chr22 28118511 28119007 + 1.16667 NA intron (NM_001145418, intron 6 of 22) L4_B_Mam|LINE|RTE-X -198147 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 190.334-3 chr4 55217864 55218079 + 1.16667 NA Intergenic Intergenic -92376 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 144.667-90 chr7 93179495 93179658 + 1.16667 NA Intergenic Intergenic -31191 NM_001350085 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 222.167-31 chr6 72632727 72633017 + 1.16667 NA intron (NR_120503, intron 1 of 3) L1PA16|LINE|L1 2377 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 336.167 chr11 30067614 30067974 + 1.16667 NA Intergenic L1MB7|LINE|L1 -50764 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 135-75 chr4 164009123 164009276 + 1.16667 NA intron (NM_001166373, intron 2 of 7) L1M1|LINE|L1 188512 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 273.667-9 chr18 72598884 72599450 + 1.16667 NA Intergenic Intergenic -54825 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 183.333-46 chr5 92811649 92811931 + 1.16667 NA Intergenic Intergenic 759553 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 203-10 chr14 28926643 28926963 + 1.16667 NA Intergenic L1MC|LINE|L1 -141016 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 298-4 chr2 161802500 161802969 + 1.16667 NA intron (NM_001354453, intron 2 of 24) MLT1B|LTR|ERVL-MaLR 178318 NM_001354445 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 145.334-7 chr6 130465735 130465898 + 1.16667 NA Intergenic Intergenic 28699 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 184-59 chr7 76026294 76026481 + 1.16667 NA intron (NM_016086, intron 3 of 8) AluJr|SINE|Alu 4137 NM_001317789 51657 Hs.11615 NM_016086 ENSG00000127952 STYXL1 DUSP24|MK-STYX|MKSTYX serine/threonine/tyrosine interacting like 1 protein-coding 356.001 chr7 42849100 42849588 + 1.16667 NA Intergenic L1MA9|LINE|L1 62499 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 169.667-30 chr17 57481639 57481896 + 1.16667 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 41830 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 274.5-11 chr3 196281730 196282169 + 1.16667 NA intron (NM_001312673, intron 1 of 8) AluJr|SINE|Alu 5777 NM_005017 5130 Hs.135997 NM_005017 ENSG00000161217 PCYT1A CCTA|CT|CTA|CTPCT|PCYT1|SMDCRD phosphate cytidylyltransferase 1, choline, alpha protein-coding 179.333-56 chr8 133243736 133244080 + 1.16667 NA intron (NM_001135242, intron 14 of 15) (CA)n|Simple_repeat|Simple_repeat 52869 NM_001204869 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 154.5-56 chr5 113543178 113543468 + 1.16667 NA intron (NM_001345975, intron 9 of 28) L2a|LINE|L2 29629 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 275.167-8 chr21 24675405 24675838 + 1.16667 NA Intergenic Intergenic -164929 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 382.834-2 chr9 42388579 42389414 + 1.16667 NA Intergenic Intergenic 180353 NR_126050 103908605 Hs.721139 NR_126050 LOC103908605 - uncharacterized LOC103908605 ncRNA 255.501 chr13 82346263 82346549 + 1.16667 NA Intergenic L2a|LINE|L2 -1119423 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 269.501 chr5 66284935 66285539 + 1.16667 NA Intergenic Intergenic -75791 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 161.5-30 chr22 21808456 21808745 + 1.16667 NA intron (NM_002745, intron 1 of 8) Tigger10|DNA|TcMar-Tigger 59080 NM_138957 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 239.167-11 chr5 22960089 22960362 + 1.16667 NA Intergenic HAL1ME|LINE|L1 -106881 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 374 chr1 67910258 67910751 + 1.16667 NA intron (NR_040077, intron 1 of 9) L1ME3D|LINE|L1 -77037 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 330.167-2 chr14 62196215 62196742 + 1.16667 NA Intergenic L1MC1|LINE|L1 -56505 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 152.5-49 chr4 110445018 110445164 + 1.16667 NA Intergenic MER65B|LTR|ERV1 -31064 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 251.5-4 chr12 4964204 4964526 + 1.16667 NA Intergenic L2b|LINE|L2 54460 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 163.833-22 chr15 26068503 26068888 + 1.16667 NA Intergenic L2c|LINE|L2 -47118 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 147-14 chr12 14109506 14109779 + 1.16667 NA Intergenic Intergenic -129286 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 160.667-37 chr19 36065353 36065520 + 1.16667 NA intron (NM_001083961, intron 3 of 31) intron (NM_001083961, intron 3 of 31) 10539 NM_001083961 284403 Hs.116244 NM_173636 ENSG00000075702 WDR62 C19orf14|MCPH2 WD repeat domain 62 protein-coding 176-51 chr8 108516791 108516985 + 1.16667 NA Intergenic Intergenic 73264 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 161.667-69 chr5 117651702 117651890 + 1.16667 NA Intergenic Intergenic -78565 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 223.5-13 chr2 54452420 54453006 + 1.16667 NA Intergenic MIRc|SINE|MIR -3614 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 172.334-4 chr13 47049076 47049281 + 1.16667 NA Intergenic Intergenic -152102 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 179.834-5 chr14 29837713 29837918 + 1.16667 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 89281 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 213.334-5 chr5 114384544 114384846 + 1.16667 NA intron (NM_001278204, intron 2 of 6) MER117|DNA|hAT-Charlie 22376 NM_001278204 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 311.333 chr12 69176950 69177453 + 1.16667 NA Intergenic AluSx1|SINE|Alu -62368 NM_001300947 11052 Hs.369606 NM_007007 ENSG00000111605 CPSF6 CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7 cleavage and polyadenylation specific factor 6 protein-coding 216.167-34 chr9 128283167 128283387 + 1.16667 NA intron (NM_001040011, intron 2 of 4) AluSq2|SINE|Alu 7131 NM_001318089 375757 Hs.259594 NM_001040011 ENSG00000175854 SWI5 C9orf119|SAE3 SWI5 homologous recombination repair protein protein-coding 189.834 chr14 40182458 40182710 + 1.16667 NA Intergenic L1ME3D|LINE|L1 -750084 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 134.834-5 chr4 31480698 31480924 + 1.16667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -25733 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 269.334-2 chr11 58485058 58485592 + 1.16667 NA Intergenic ERVL-int|LTR|ERVL 22780 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 301.834-7 chr9 31244902 31245322 + 1.16667 NA Intergenic Intergenic 136378 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 166.5-45 chr4 77504431 77504636 + 1.16667 NA Intergenic Intergenic -7220 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 222-20 chr2 187103492 187103790 + 1.16667 NA Intergenic MER44B|DNA|TcMar-Tigger -254471 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 272-2 chr11 31321743 31322222 + 1.16667 NA intron (NM_181807, intron 3 of 8) intron (NM_181807, intron 3 of 8) 47757 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 164.334-5 chr2 36010790 36010933 + 1.16667 NA Intergenic Intergenic 344709 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 145-57 chr3 98939068 98939260 + 1.16667 NA Intergenic L1ME1|LINE|L1 -37469 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 259.5-19 chr7 37748811 37749214 + 1.16667 NA Intergenic Intergenic 65246 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 362.334-4 chr5 131491721 131492596 + 1.16667 NA intron (NM_016340, intron 14 of 27) intron (NM_016340, intron 14 of 27) 143071 NM_001164386 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 240.167-4 chr11 32008139 32008468 + 1.16667 NA Intergenic L1ME4a|LINE|L1 33015 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 171.667-55 chr3 177906125 177906426 + 1.16667 NA Intergenic Intergenic 89410 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 183-2 chr1 188218788 188218992 + 1.16667 NA Intergenic Intergenic 775262 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 283.833 chr1 179483434 179483822 + 1.16667 NA intron (NR_073544, intron 17 of 25) intron (NR_073544, intron 17 of 25) 92320 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 183.834-9 chr7 96360382 96360550 + 1.16667 NA Intergenic Intergenic -38319 NM_001160210 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding 125.167-81 chr8 123386795 123386972 + 1.16667 NA intron (NM_014109, intron 1 of 27) intron (NM_014109, intron 1 of 27) 9564 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 233-18 chr4 118963422 118963760 + 1.16667 NA intron (NM_001128934, intron 1 of 4) FLAM_A|SINE|Alu 74737 NM_001128933 171024 Hs.655519 NM_133477 ENSG00000172403 SYNPO2 - synaptopodin 2 protein-coding 303.834 chr3 28587162 28587988 + 1.16667 NA intron (NR_038840, intron 2 of 4) L2c|LINE|L2 12297 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 239.833-17 chr3 96498717 96499125 + 1.16667 NA Intergenic L1MCb|LINE|L1 138957 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 173.833-31 chr2 239895317 239895653 + 1.16667 NA intron (NR_136158, intron 9 of 10) MER45B|DNA|hAT-Tip100 47609 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 266.834-4 chr20 20732409 20732706 + 1.16667 NA Intergenic Intergenic -19913 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 120.333-32 chr12 12135635 12135784 + 1.16667 NA intron (NM_002336, intron 16 of 22).2 AluSx1|SINE|Alu 23757 NR_036262 100422885 NR_036262 ENSG00000283498 MIR1244-2 - microRNA 1244-2 ncRNA 209.334-5 chr8 130231607 130231986 + 1.16667 NA intron (NM_001362925, intron 4 of 29) intron (NM_001362925, intron 4 of 29) 64737 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 360.5-6 chr20 2440707 2441255 + 1.16667 NA Intergenic Intergenic 22066 NR_003684 100113378 NR_003684 SNORD119 - small nucleolar RNA, C/D box 119 snoRNA 116.834-2 chr1 189041290 189041646 + 1.16667 NA Intergenic Intergenic 1434542 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 222.833-14 chr21 26864809 26865252 + 1.16667 NA Intergenic AluY|SINE|Alu -19621 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 138.334-4 chr16 31303715 31303944 + 1.16667 NA intron (NM_001145808, intron 14 of 29) L1PB2|LINE|L1 43854 NM_001145808 3684 Hs.172631 NM_000632 ENSG00000169896 ITGAM CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6 integrin subunit alpha M protein-coding 402.667 chr14 72219293 72219975 + 1.16667 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 286107 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 324.5-6 chr8 136956018 136956504 + 1.16667 NA Intergenic AluSc|SINE|Alu 425463 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 159.834 chr10 59853328 59853520 + 1.16667 NA intron (NM_005436, intron 1 of 8) AluSx3|SINE|Alu 53132 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 156.667-2 chr1 64624317 64624515 + 1.16667 NA intron (NM_020925, intron 4 of 26) intron (NM_020925, intron 4 of 26) 44569 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 216.834 chr1 14224919 14225232 + 1.16667 NA Intergenic L1PA15|LINE|L1 194898 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 150.833-25 chr20 3056432 3056751 + 1.16667 NA Intergenic AluJr|SINE|Alu 10539 NM_030811 64949 Hs.18946 NM_030811 ENSG00000125901 MRPS26 C20orf193|GI008|MRP-S13|MRP-S26|MRPS13|NY-BR-87|RPMS13|dJ534B8.3 mitochondrial ribosomal protein S26 protein-coding 215.333-5 chr10 75954732 75955172 + 1.16667 NA intron (NR_131178, intron 3 of 7) Kanga1|DNA|TcMar-Tc2 172191 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 263-13 chr5 23121735 23122080 + 1.16667 NA Intergenic Intergenic -268563 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 175.333-28 chr2 182503537 182503887 + 1.16667 NA intron (NM_005019, intron 1 of 14) L2a|LINE|L2 18814 NM_005019 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 120.167-31 chr17 78259886 78260075 + 1.16667 NA Intergenic L1ME3B|LINE|L1 18512 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LINC01993 - long intergenic non-protein coding RNA 1993 ncRNA 413.667-2 chr4 138325823 138326320 + 1.16667 NA intron (NR_051987, intron 1 of 2) intron (NR_051987, intron 1 of 2) 16360 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 150.667-69 chr4 33661382 33661515 + 1.16667 NA Intergenic Intergenic 378445 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 135.5-24 chr12 78381654 78381845 + 1.16667 NA Intergenic L1MEd|LINE|L1 -22003 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 206.834 chr1 19909037 19909301 + 1.16667 NA 3' UTR (NM_015207, exon 8 of 8) 3' UTR (NM_015207, exon 8 of 8) 14448 NM_014589 30814 Hs.272372 NM_014589 ENSG00000188784 PLA2G2E GIIE sPLA2|sPLA2-IIE phospholipase A2 group IIE protein-coding 338.5 chr10 44824733 44825241 + 1.16667 NA intron (NR_033842, intron 6 of 7) intron (NR_033842, intron 6 of 7) -86329 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 152.167-84 chrX 62979763 62979996 + 1.16667 NA Intergenic L1PA16|LINE|L1 371453 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 178.5-71 chr8 87184655 87184986 + 1.16667 NA intron (NM_173538, intron 4 of 10) L1PA15|LINE|L1 318405 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 210.334-4 chr2 114515321 114515614 + 1.16667 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 53890 NM_001321905 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 380.334-3 chr6 61366124 61366637 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr -207750 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 124.334-5 chr4 111561684 111561808 + 1.16667 NA Intergenic L1MA6|LINE|L1 -583708 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 389.5-2 chr20 44955730 44956210 + 1.16667 NA intron (NR_134986, intron 5 of 5) intron (NR_134986, intron 5 of 5) 4427 NM_006809 10953 Hs.517066 NM_006809 ENSG00000025772 TOMM34 HTOM34P|TOM34|URCC3 translocase of outer mitochondrial membrane 34 protein-coding 178.5-50 chr3 6463255 6463502 + 1.16667 NA Intergenic L1MB8|LINE|L1 342071 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 216.667-38 chr5 110090144 110090539 + 1.16667 NA Intergenic Intergenic 207159 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 239.667-27 chr4 157573425 157573692 + 1.16667 NA intron (NR_026992, intron 2 of 2) intron (NR_026992, intron 2 of 2) 1068 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 179.167-14 chr12 98793018 98793219 + 1.16667 NA intron (NM_001352221, intron 5 of 9) L1MA6|LINE|L1 101656 NM_001352222 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 231-11 chr17 32724867 32725250 + 1.16667 NA intron (NM_015194, intron 14 of 21) L1MEg|LINE|L1 152066 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 192.167-9 chr11 112017021 112017334 + 1.16667 NA intron (NM_001037954, intron 18 of 19) intron (NM_001037954, intron 18 of 19) -7637 NM_001931 1737 Hs.335551 NM_001931 ENSG00000150768 DLAT DLTA|E2|PDC-E2|PDCE2 dihydrolipoamide S-acetyltransferase protein-coding 214.667-10 chr11 48096976 48097212 + 1.16667 NA TTS (NR_036119) TTS (NR_036119) 312 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 115-22 chr13 50890195 50890352 + 1.16667 NA intron (NR_046552, intron 1 of 2) MIRc|SINE|MIR -19405 NM_024570 79621 Hs.306291 NM_024570 ENSG00000136104 RNASEH2B AGS2|DLEU8 ribonuclease H2 subunit B protein-coding 196.5-15 chr18 39906313 39906580 + 1.16667 NA Intergenic Intergenic 64737 NR_151703 105372079 NR_151703 ENSG00000283503 LINC01902 - long intergenic non-protein coding RNA 1902 ncRNA 249.834-2 chr4 59297014 59297326 + 1.16667 NA Intergenic Intergenic 283597 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 131.833-15 chr14 59171536 59171710 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -17044 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 199.5-14 chr17 13213472 13213758 + 1.16667 NA Intergenic L1MC3|LINE|L1 93145 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 231.5-19 chr5 20126353 20126898 + 1.16667 NA intron (NM_001291956, intron 2 of 14) L1MB1|LINE|L1 -138425 NM_001349561 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 129.167-10 chr10 86301656 86301805 + 1.16667 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) -36942 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 160.5-61 chr8 112369229 112369475 + 1.16667 NA intron (NM_001363185, intron 34 of 66) intron (NM_001363185, intron 34 of 66) -274141 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 121.834-2 chr13 68810078 68810197 + 1.16667 NA Intergenic Intergenic 75188 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 191.833-20 chr3 146705214 146705572 + 1.16667 NA Intergenic Intergenic -99177 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 303.334-6 chr3 30749445 30749804 + 1.16667 NA intron (NM_207359, intron 14 of 14) intron (NM_207359, intron 14 of 14) 143023 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 324.834-2 chr2 97924681 97925054 + 1.16667 NA intron (NM_015348, intron 2 of 40) intron (NM_015348, intron 2 of 40) 71081 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 115-4 chr1 190049231 190049407 + 1.16667 NA Intergenic Intergenic 426691 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 329.001 chr10 82284608 82285057 + 1.16667 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -51912 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 287.167-9 chr2 151364632 151365058 + 1.16667 NA intron (NM_007115, intron 2 of 5) intron (NM_007115, intron 2 of 5) -3489 NR_039931 100616392 NR_039931 ENSG00000264684 MIR4773-1 - microRNA 4773-1 ncRNA 198.167-39 chr8 138000935 138001266 + 1.16667 NA intron (NR_161374, intron 2 of 7) L1PA12|LINE|L1 82445 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 147.5-92 chr9 113694079 113694225 + 1.16667 NA Intergenic L1MB8|LINE|L1 100023 NM_001276262 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 163.167-31 chr4 87849144 87849328 + 1.16667 NA Intergenic Intergenic 14533 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 288.834-5 chr6 138808652 138809047 + 1.16667 NA intron (NM_001195037, intron 1 of 20) AluSz6|SINE|Alu 12738 NM_001077706 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 213-22 chr20 47117626 47117878 + 1.16667 NA intron (NM_172110, intron 9 of 13) intron (NM_172110, intron 9 of 13) -49215 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 279.001-2 chr14 29036333 29036635 + 1.16667 NA Intergenic Intergenic -250697 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 174.167-13 chr14 42735180 42735549 + 1.16667 NA Intergenic L2c|LINE|L2 1128508 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 402.001 chr5 2826350 2827036 + 1.16667 NA Intergenic L1MA7|LINE|L1 74562 NM_001306150 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 281.334-3 chr7 54826449 54826720 + 1.16667 NA Intergenic L1PA15|LINE|L1 67271 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 389.167 chr15 68962929 68963500 + 1.16667 NA intron (NM_001184780, intron 1 of 15) AluJo|SINE|Alu 32689 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 143.167-63 chr5 19103846 19103990 + 1.16667 NA Intergenic Intergenic 782354 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 191.833-7 chr15 68113537 68113854 + 1.16667 NA intron (NM_016166, intron 2 of 13) intron (NM_016166, intron 2 of 13) 59119 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 265.667-4 chr1 216771274 216771592 + 1.16667 NA intron (NM_001243513, intron 1 of 7) intron (NM_001243513, intron 1 of 7) 33952 NM_001243514 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 147.667-13 chr10 53604220 53604387 + 1.16667 NA Intergenic L1M4|LINE|L1 -832603 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 201.834-4 chr14 72235494 72235881 + 1.16667 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -281133 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 275.333-12 chr19 31466888 31467326 + 1.16667 NA Intergenic L1M5|LINE|L1 -117671 NM_020856 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 179.334-3 chr14 54180172 54180416 + 1.16667 NA Intergenic Intergenic -216574 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 254.834-6 chr5 2868000 2868318 + 1.16667 NA Intergenic Intergenic -49695 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 294.667-5 chr2 19446466 19446795 + 1.16667 NA Intergenic MIR3|SINE|MIR -88007 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 179.167-12 chr12 12569766 12569962 + 1.16667 NA Intergenic Intergenic -7001 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 164-57 chr5 126009872 126010091 + 1.16667 NA Intergenic L1MEh|LINE|L1 -169596 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 118-77 chr3 42025182 42025354 + 1.16667 NA Intergenic Intergenic -61932 NR_146089 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 280.167-6 chr3 126629762 126630065 + 1.16667 NA intron (NM_001173513, intron 9 of 14) L2|LINE|L2 25211 NM_001173513 114112 Hs.477475 NM_052883 ENSG00000197763 TXNRD3 TGR|TR2|TR2IT1|TRXR3|TXNRD3IT1|TXNRD3NB|TXNRD3NT1 thioredoxin reductase 3 protein-coding 181.833-47 chr6 150533695 150534002 + 1.16667 NA Intergenic MIRc|SINE|MIR -66037 NM_001329805 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 238.667-20 chr3 19733618 19733950 + 1.16667 NA Intergenic Intergenic 200433 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 184.167-19 chr14 67298605 67298851 + 1.16667 NA intron (NM_001256550, intron 4 of 14) L1ME1|LINE|L1 57293 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 188.334-11 chr7 48300161 48300327 + 1.16667 NA intron (NM_152701, intron 23 of 61) intron (NM_152701, intron 23 of 61) 128786 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 276.167-11 chr5 64278984 64279470 + 1.16667 NA intron (NM_001113561, intron 5 of 7) L2|LINE|L2 113384 NM_001323292 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 231.5-22 chr7 39277144 39277435 + 1.16667 NA intron (NM_001370959, intron 4 of 9) L1PA17|LINE|L1 51845 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 187.5-59 chrX 143011421 143011648 + 1.16667 NA Intergenic Intergenic -14394 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 191.834-7 chr6 103457938 103458246 + 1.16667 NA Intergenic L1ME3A|LINE|L1 1401454 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 279.833-2 chr13 62240823 62241326 + 1.16667 NA intron (NR_125787, intron 3 of 3) intron (NR_125787, intron 3 of 3) 28792 NR_125787 103752583 Hs.578048 NR_125787 LINC01075 - long intergenic non-protein coding RNA 1075 ncRNA 164.667-50 chr3 197836590 197836793 + 1.16667 NA intron (NM_001365717, intron 9 of 19) intron (NM_001365717, intron 9 of 19) 45437 NR_158582 84859 Hs.518414 NM_032773 ENSG00000186001 LRCH3 - leucine rich repeats and calponin homology domain containing 3 protein-coding 311-3 chr14 84161525 84161934 + 1.16667 NA Intergenic MIRb|SINE|MIR -1110203 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 318.334-3 chr4 19472233 19472998 + 1.16667 NA Intergenic L1PA17|LINE|L1 -779290 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 162.167-44 chr5 168116337 168116615 + 1.16667 NA intron (NM_001368145, intron 8 of 26) intron (NM_001368145, intron 8 of 26) -49369 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 214.167-2 chr1 229928947 229929260 + 1.16667 NA Intergenic Intergenic -35195 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 130.333-82 chr6 142410106 142410331 + 1.16667 NA intron (NM_198569, intron 17 of 24) intron (NM_198569, intron 17 of 24) 108211 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 249.5-14 chr2 177111882 177112172 + 1.16667 NA Intergenic L1ME3D|LINE|L1 100384 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 243.834-5 chr2 116370072 116370373 + 1.16667 NA Intergenic Intergenic 1026407 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 337.333-5 chr7 35748940 35749484 + 1.16667 NA Intergenic L1MC5a|LINE|L1 32775 NR_108082 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 215.334-3 chr4 64792831 64793129 + 1.16667 NA Intergenic Intergenic 211520 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 258.5-11 chr2 73129804 73130048 + 1.16667 NA Intergenic Intergenic -16978 NM_015470 26056 Hs.24557 NM_015470 ENSG00000135631 RAB11FIP5 GAF1|RIP11|pp75 RAB11 family interacting protein 5 protein-coding 220.167 chr10 20718836 20719138 + 1.16667 NA Intergenic L1M5|LINE|L1 167017 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 191-6 chr12 54270473 54270679 + 1.16667 NA intron (NR_157844, intron 1 of 1) L1M5|LINE|L1 7961 NR_157844 112935960 NR_157844 SCAT2 CBX5-AS1 S-phase cancer associated transcript 2 ncRNA 212.834-5 chr9 94055961 94056319 + 1.16667 NA intron (NM_177995, intron 1 of 9) MIR|SINE|MIR 25327 NM_001253830 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 166.834 chr7 124741965 124742129 + 1.16667 NA Intergenic L1ME1|LINE|L1 23745 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 313.501 chr10 22989240 22989508 + 1.16667 NA intron (NM_001282745, intron 10 of 18) intron (NM_001282745, intron 10 of 18) 61321 NM_001282746 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 257.334 chr10 33619216 33619524 + 1.16667 NA Intergenic THE1D|LTR|ERVL-MaLR 153310 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 254.834-3 chr15 59707672 59708041 + 1.16667 NA Intergenic L1ME1|LINE|L1 -18536 NM_001368057 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 224.167-4 chr1 202164042 202164402 + 1.16667 NA Intergenic Intergenic -2634 NM_002832 5778 Hs.402773 NM_002832 ENSG00000143851 PTPN7 BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI protein tyrosine phosphatase non-receptor type 7 protein-coding 301.667-6 chr2 11431385 11431953 + 1.16667 NA Intergenic MSTB|LTR|ERVL-MaLR 34492 NM_212540 1876 Hs.603093 NM_198256 ENSG00000169016 E2F6 E2F-6 E2F transcription factor 6 protein-coding 262.333-19 chr4 46384070 46384562 + 1.16667 NA intron (NM_001114175, intron 2 of 8) intron (NM_001114175, intron 2 of 8) 5063 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 164.334-12 chr8 131282186 131282483 + 1.16667 NA Intergenic Intergenic -241425 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 263.001-2 chr3 24061709 24062026 + 1.16667 NA Intergenic AluSx|SINE|Alu 41380 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 185-12 chr13 53635309 53635540 + 1.16667 NA Intergenic Intergenic -179995 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 304.834-5 chr7 7245172 7245492 + 1.16667 NA 3' UTR (NM_020156, exon 4 of 4) 3' UTR (NM_020156, exon 4 of 4) -9822 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 244.167-23 chr9 104586873 104587127 + 1.16667 NA Intergenic Intergenic 12413 NM_001004482 138799 Hs.553598 NM_001004482 ENSG00000277556 OR13C5 OR9-11 olfactory receptor family 13 subfamily C member 5 protein-coding 194.667-28 chr2 78815696 78816085 + 1.16667 NA Intergenic Intergenic -209812 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 211.667-8 chr12 16961606 16961931 + 1.16667 NA Intergenic Intergenic -26979 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 268-16 chr3 186331411 186331809 + 1.16667 NA intron (NM_001346, intron 1 of 24) intron (NM_001346, intron 1 of 24) 30624 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 173.5-15 chr11 76362171 76362388 + 1.16667 NA intron (NM_004705, intron 2 of 4) intron (NM_004705, intron 2 of 4) 18686 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 133.5-33 chr2 24880457 24880686 + 1.16667 NA intron (NM_001320613, intron 2 of 21) intron (NM_001320613, intron 2 of 21) 39666 NM_001320613 109 Hs.467898 NM_004036 ENSG00000138031 ADCY3 AC-III|AC3|BMIQ19 adenylate cyclase 3 protein-coding 259.167-12 chr4 100795327 100795703 + 1.16667 NA Intergenic Intergenic -120402 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 124.5-40 chr20 57335537 57335734 + 1.16667 NA intron (NM_198265, intron 6 of 11) L2c|LINE|L2 5832 NM_198265 23626 Hs.159737 NM_012444 ENSG00000054796 SPO11 CT35|SPATA43|TOPVIA SPO11 initiator of meiotic double stranded breaks protein-coding 116.5-25 chr16 86257027 86257377 + 1.16667 NA intron (NR_104139, intron 3 of 5) L1MDa|LINE|L1 29045 NR_104139 101154687 Hs.640512 NR_104139 LINC01081 TCONS00024764|TCONS_00024764 long intergenic non-protein coding RNA 1081 ncRNA 133.333-28 chr12 3880942 3881161 + 1.16667 NA Intergenic Intergenic -7603 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 280.333 chr1 58657491 58657919 + 1.16667 NA 3' UTR (NM_001085487, exon 20 of 20) 3' UTR (NM_001085487, exon 20 of 20) 42357 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 276.834-3 chr5 36395444 36395738 + 1.16667 NA Intergenic Intergenic -93689 NM_001323276 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 336-8 chr4 36156810 36157364 + 1.16667 NA intron (NR_146894, intron 15 of 32) intron (NR_146894, intron 15 of 32) 86852 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 200.5-12 chr14 82076618 82076887 + 1.16667 NA Intergenic Intergenic -333614 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 190.167-37 chr5 93115240 93115654 + 1.16667 NA Intergenic Intergenic 455896 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 271.167-18 chr8 83342635 83343261 + 1.16667 NA Intergenic Intergenic -60810 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 277-18 chr8 117598215 117598572 + 1.16667 NA Intergenic Intergenic 77680 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 284.834 chr12 105742798 105743099 + 1.16667 NA non-coding (NR_110108, exon 3 of 3) non-coding (NR_110108, exon 3 of 3) 36174 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 161.5-4 chr10 65470653 65470898 + 1.16667 NA Intergenic Intergenic -100650 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 135.5-86 chr9 27954901 27955071 + 1.16667 NA intron (NM_001354574, intron 5 of 5) L1MA4A|LINE|L1 -381120 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 205-39 chr7 26609124 26609370 + 1.16667 NA Intergenic Intergenic -28624 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 222.167-18 chr17 8191142 8191363 + 1.16667 NA Intergenic Intergenic -1072 NM_017622 54785 Hs.129563 NM_017622 ENSG00000196544 BORCS6 C17orf59|PRO2472 BLOC-1 related complex subunit 6 protein-coding 263.167-9 chr22 20228841 20229233 + 1.16667 NA Intergenic Intergenic 20174 NR_031618 100302118 NR_031618 ENSG00000221039 MIR1286 MIRN1286|hsa-mir-1286|mir-1286 microRNA 1286 ncRNA 220.667-40 chr7 118301068 118301307 + 1.16667 NA Intergenic Intergenic 76483 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 192.5-41 chr5 28440485 28440749 + 1.16667 NA Intergenic Intergenic -152952 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 188.334-8 chr21 42342250 42342535 + 1.16667 NA Intergenic Tigger3b|DNA|TcMar-Tigger 8602 NM_005423 7032 Hs.2979 NM_005423 ENSG00000160181 TFF2 SML1|SP trefoil factor 2 protein-coding 226.334-5 chr20 52497873 52498216 + 1.16667 NA Intergenic AluJb|SINE|Alu -122794 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 348.334 chr11 74085315 74086015 + 1.16667 NA exon (NM_015531, exon 21 of 31) exon (NM_015531, exon 21 of 31) -76428 NM_022803 7352 Hs.101337 NM_003356 ENSG00000175564 UCP3 SLC25A9 uncoupling protein 3 protein-coding 300.167 chr1 87876869 87877640 + 1.16667 NA Intergenic Intergenic -505599 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 247.333-18 chr4 33350367 33350843 + 1.16667 NA Intergenic Intergenic 689288 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 164.167-61 chr8 113086608 113086791 + 1.16667 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 290453 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 216-9 chr15 58381337 58381663 + 1.16667 NA Intergenic Intergenic -50491 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 260.5-3 chr14 42536627 42536965 + 1.16667 NA Intergenic L1MA4|LINE|L1 929940 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 210.833-23 chr5 26941137 26941506 + 1.16667 NA intron (NM_016279, intron 2 of 11) intron (NM_016279, intron 2 of 11) 97265 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 213.334-4 chr3 101017342 101017576 + 1.16667 NA Intergenic Intergenic -23969 NM_001349331 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 293.834-3 chr5 12254379 12254818 + 1.16667 NA Intergenic Intergenic -320259 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 264.5-6 chr20 47647528 47647786 + 1.16667 NA intron (NM_181659, intron 18 of 22) intron (NM_181659, intron 18 of 22) 138407 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 376-5 chr5 116879163 116879659 + 1.16667 NA Intergenic Intergenic -117202 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 149.334-7 chr2 72637094 72637398 + 1.16667 NA intron (NR_135774, intron 6 of 19) L1P3|LINE|L1 188787 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 215.834-9 chr8 108006442 108006770 + 1.16667 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 75333 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 163-36 chr21 29589827 29590017 + 1.16667 NA intron (NM_000830, intron 10 of 16) intron (NM_000830, intron 10 of 16) -6118 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 371-2 chr17 62892537 62893012 + 1.16667 NA Intergenic Intergenic -51441 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 278.5-3 chr10 49463233 49463575 + 1.16667 NA intron (NM_001346440, intron 18 of 20) intron (NM_001346440, intron 18 of 20) 60877 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 223.167-4 chr11 42685964 42686211 + 1.16667 NA Intergenic L1MA9|LINE|L1 -432397 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 123.5-56 chr3 177472104 177472304 + 1.16667 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 30283 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 246.167-22 chr5 19721975 19722329 + 1.16667 NA intron (NM_001349559, intron 4 of 12) AluSx1|SINE|Alu 164120 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 209.833-6 chr12 39003938 39004140 + 1.16667 NA Intergenic MIRb|SINE|MIR -98448 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 278.5-12 chr6 74393899 74394295 + 1.16667 NA intron (NR_110856, intron 2 of 3) MSTA|LTR|ERVL-MaLR 324646 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 135.667-70 chr3 45878741 45878978 + 1.16667 NA intron (NM_001276379, intron 2 of 9) AluSx3|SINE|Alu -7645 NM_001256369 10803 Hs.225946 NM_006641 ENSG00000173585 CCR9 CC-CKR-9|CDw199|GPR-9-6|GPR28 C-C motif chemokine receptor 9 protein-coding 211.834-2 chr17 58096965 58097213 + 1.16667 NA Intergenic ERVL-B4-int|LTR|ERVL 13670 NM_080677 140735 Hs.720595 NM_080677 ENSG00000264364 DYNLL2 DNCL1B|Dlc2|RSPH22 dynein light chain LC8-type 2 protein-coding 195-44 chr7 25873642 25873902 + 1.16667 NA Intergenic Intergenic 76214 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 217.834-4 chr20 22395919 22396279 + 1.16667 NA Intergenic L1MC5a|LINE|L1 24544 NR_027090 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 135-68 chr4 40173135 40173323 + 1.16667 NA Intergenic Intergenic -17851 NM_001278368 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 261.667-4 chr10 77285041 77285405 + 1.16667 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 65538 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 171.833-8 chr10 87755107 87755359 + 1.16667 NA intron (NM_001321967, intron 9 of 9) intron (NM_001321967, intron 9 of 9) 62998 NM_001321967 84896 Hs.435948 NM_032810 ENSG00000138138 ATAD1 AFDC1|FNP001|HKPX4|THORASE ATPase family AAA domain containing 1 protein-coding 261.5-7 chr13 32941904 32942201 + 1.16667 NA Intergenic L1MB3|LINE|L1 -30400 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 154.667-42 chr20 22640153 22640444 + 1.16667 NA Intergenic Intergenic -32781 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LNCNEF LINC01384|lncRNA-NEF lncRNA neighboring enhancer of FOXA2 ncRNA 298-5 chr20 2093484 2093927 + 1.16667 NA Intergenic HAL1|LINE|L1 -8122 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 228.334-3 chr18 44403045 44403347 + 1.16667 NA intron (NR_110792, intron 2 of 4) MLT1I|LTR|ERVL-MaLR 128501 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 158.667-76 chr6 56039991 56040246 + 1.16667 NA Intergenic MER103C|DNA|hAT-Charlie 51544 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 265-16 chr3 178197559 178197858 + 1.16667 NA Intergenic Intergenic -221493 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 210.001 chr10 94727990 94728190 + 1.16667 NA intron (NM_000772, intron 7 of 8) L1MC4|LINE|L1 -34591 NM_000769 1557 Hs.282409 NM_000769 ENSG00000165841 CYP2C19 CPCJ|CYP2C|CYPIIC17|CYPIIC19|P450C2C|P450IIC19 cytochrome P450 family 2 subfamily C member 19 protein-coding 127.834-4 chr3 121661569 121661865 + 1.16667 NA promoter-TSS (NM_005335) promoter-TSS (NM_005335) -814 NM_001292041 3059 Hs.14601 NM_005335 ENSG00000180353 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 267.834-7 chr9 86007078 86007475 + 1.16667 NA intron (NM_024635, intron 13 of 22) intron (NM_024635, intron 13 of 22) 65747 NM_001321882 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 233.334-6 chr3 102189530 102189850 + 1.16667 NA Intergenic Intergenic 25985 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 257.334-4 chr2 154985616 154985906 + 1.16667 NA Intergenic Intergenic 287066 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 113.167-18 chr14 59319670 59319780 + 1.16667 NA intron (NM_001270520, intron 4 of 24) intron (NM_001270520, intron 4 of 24) 56284 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 202.334-5 chr2 117298773 117299077 + 1.16667 NA Intergenic L1PBb|LINE|L1 -515766 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 193.667-23 chr2 32604336 32604658 + 1.16667 NA intron (NM_016252, intron 71 of 73) intron (NM_016252, intron 71 of 73) -23553 NM_001193509 55622 Hs.468125 NM_017735 ENSG00000018699 TTC27 - tetratricopeptide repeat domain 27 protein-coding 233.333-11 chr14 88216397 88216901 + 1.16667 NA intron (NM_138317, intron 4 of 6) intron (NM_138317, intron 4 of 6) 54262 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 263.001 chr2 216017067 216017588 + 1.16667 NA Intergenic Intergenic -3776 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 249.167-6 chr18 8038916 8039565 + 1.16667 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 327794 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 131.667-131 chr9 26138597 26138724 + 1.16667 NA Intergenic Intergenic 71985 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 314.167 chr1 199428368 199428773 + 1.16667 NA Intergenic L1MA9|LINE|L1 279972 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 164.834-2 chr4 38239650 38239916 + 1.16667 NA Intergenic Intergenic 119829 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 267.833-17 chr8 114834448 114834843 + 1.16667 NA Intergenic L1MEf|LINE|L1 833368 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 140.667-73 chr6 42372150 42372305 + 1.16667 NA intron (NM_001297573, intron 2 of 17) intron (NM_001297573, intron 2 of 17) 79824 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 396 chr1 101446409 101446950 + 1.16667 NA Intergenic L1PB1|LINE|L1 122842 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 296-9 chr18 21216346 21217053 + 1.16667 NA Intergenic AluJb|SINE|Alu -25543 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 332.167-5 chr2 157822453 157822779 + 1.16667 NA intron (NM_001347665, intron 1 of 11) MER99|DNA|hAT? 16014 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 208.834-7 chr3 85002006 85002232 + 1.16667 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 43130 NM_001167674 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 250.334 chr15 50697563 50697788 + 1.16667 NA Intergenic Intergenic -10878 NR_149154 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 257.333-27 chr9 559603 560036 + 1.16667 NA intron (NM_001256877, intron 2 of 12) intron (NM_001256877, intron 2 of 12) 55264 NM_001354331 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 160.5-62 chr9 30698667 30698809 + 1.16667 NA Intergenic Intergenic -290284 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 307.667-10 chr5 32940788 32941350 + 1.16667 NA Intergenic Intergenic -6374 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 120.333-82 chr4 36152328 36152503 + 1.16667 NA intron (NR_146894, intron 15 of 32) intron (NR_146894, intron 15 of 32) 91524 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 371.834 chr5 145458464 145459245 + 1.16667 NA Intergenic Intergenic 376488 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 145.5 chr1 97622080 97622249 + 1.16667 NA intron (NM_000110, intron 8 of 22) L1MC3|LINE|L1 -174757 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 365.334 chr19 55808492 55809316 + 1.16667 NA exon (NM_145007, exon 5 of 12) exon (NM_145007, exon 5 of 12) 23190 NM_001297743 204801 Hs.375039 NM_145007 ENSG00000179873 NLRP11 CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7 NLR family pyrin domain containing 11 protein-coding 137.334 chr1 247920452 247920621 + 1.16667 NA promoter-TSS (NM_001005522) promoter-TSS (NM_001005522) -482 NM_001005522 343172 Hs.521114 NM_001005522 ENSG00000177462 OR2T8 OR2T8P olfactory receptor family 2 subfamily T member 8 protein-coding 239.334-4 chr4 69580565 69581010 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -54773 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 185-17 chr14 69145542 69145799 + 1.16667 NA intron (NM_003861, intron 1 of 8) intron (NM_003861, intron 1 of 8) 6929 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 194.667-62 chr8 80037015 80037753 + 1.16667 NA non-coding (NR_105033, exon 9 of 9) non-coding (NR_105033, exon 9 of 9) -7125 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 172.833-36 chr4 31970773 31971158 + 1.16667 NA Intergenic L2c|LINE|L2 -26414 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 275.5-11 chr6 9172689 9173103 + 1.16667 NA Intergenic LTR32|LTR|ERVL 520687 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 223-23 chr4 120454985 120455210 + 1.16667 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -388249 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 152.167-22 chr18 1813273 1813478 + 1.16667 NA Intergenic L1MA8|LINE|L1 -453746 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 223.334 chr1 14406222 14406547 + 1.16667 NA intron (NR_149058, intron 1 of 4) L1PB1|LINE|L1 13589 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 249.667-9 chr11 106128801 106129108 + 1.16667 NA intron (NR_135099, intron 1 of 2) intron (NR_135099, intron 1 of 2) 3162 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 294.334-5 chr4 58189298 58189645 + 1.16667 NA Intergenic Intergenic 346857 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 139.5-56 chr5 96634723 96634941 + 1.16667 NA Intergenic (AAC)n|Simple_repeat|Simple_repeat -27205 NM_001042442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 259.5-8 chr2 121587534 121588008 + 1.16667 NA intron (NM_015282, intron 2 of 38) AluSx|SINE|Alu 56891 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 219.834-3 chr13 57071428 57071739 + 1.16667 NA Intergenic Intergenic -69335 NM_001130404 729233 Hs.723090 NM_001130404 ENSG00000204918 PRR20B PRR20|PRR20A|PRR20C|PRR20D|PRR20E proline rich 20B protein-coding 240.5-16 chr5 52449853 52450212 + 1.16667 NA Intergenic Intergenic -337884 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 186.834-9 chr8 89612216 89612442 + 1.16667 NA Intergenic Intergenic 145382 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 269.667-2 chr1 56513851 56514212 + 1.16667 NA intron (NM_003713, intron 4 of 5) intron (NM_003713, intron 4 of 5) 65532 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 133.667-43 chr17 70158451 70158910 + 1.16667 NA Intergenic Intergenic 10722 NR_036534 400617 Hs.225661 NR_036534 ENSG00000267365 KCNJ2-AS1 - KCNJ2 antisense RNA 1 ncRNA 154.167-19 chr14 29432978 29433176 + 1.16667 NA Intergenic AluSc8|SINE|Alu 494019 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 170-58 chr5 92099623 92100037 + 1.16667 NA Intergenic Charlie8|DNA|hAT-Charlie -716513 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 232-9 chr12 87226736 87227135 + 1.16667 NA Intergenic Intergenic -103804 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 277.834-3 chr5 53590369 53590707 + 1.16667 NA intron (NR_134475, intron 2 of 5) intron (NR_134475, intron 2 of 5) 29899 NR_134473 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 182.167-41 chr9 130133549 130133738 + 1.16667 NA intron (NM_020960, intron 17 of 17) intron (NM_020960, intron 17 of 17) 10576 NR_135124 401554 Hs.522437 NR_135124 ENSG00000196979 GPRACR LncGPR107 GPR107 adjacent cis regulating lncRNA ncRNA 207.5-26 chr3 82675767 82676077 + 1.16667 NA Intergenic Intergenic 689780 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 226-13 chr2 176296509 176296762 + 1.16667 NA intron (NM_001006635, intron 2 of 10) intron (NM_001006635, intron 2 of 10) 27193 NM_001006635 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 415.333-2 chr8 75346421 75347247 + 1.16667 NA Intergenic Intergenic -60815 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 135.834-3 chr7 7535211 7535428 + 1.16667 NA intron (NM_001037763, intron 1 of 34) intron (NM_001037763, intron 1 of 34) 554 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 233.167-13 chr16 59459077 59459445 + 1.16667 NA Intergenic Intergenic 295930 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 218.834-2 chr10 83291390 83291628 + 1.16667 NA Intergenic Intergenic 385580 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 150.167-5 chr1 185686686 185686856 + 1.16667 NA Intergenic Intergenic -47620 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 255.334-2 chr14 64909868 64910187 + 1.16667 NA Intergenic Intergenic -4334 NM_001202559 100529261 Hs.325531 NM_001202558 ENSG00000125954 CHURC1-FNTB FNTB|FTase-beta CHURC1-FNTB readthrough protein-coding 157.5-10 chr11 102161607 102161821 + 1.16667 NA intron (NM_001130145, intron 2 of 8) intron (NM_001130145, intron 2 of 8) 49266 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 134-32 chr13 52466628 52466846 + 1.16667 NA TTS (NM_001286687) TTS (NM_001286687) 10765 NM_001286686 26586 Hs.444028 NM_018204 ENSG00000136108 CKAP2 LB1|TMAP|se20-10 cytoskeleton associated protein 2 protein-coding 203.001-2 chr19 24375502 24375885 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr -212246 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 321.501 chr9 121266397 121266775 + 1.16667 NA intron (NM_001353054, intron 9 of 25) intron (NM_001353054, intron 9 of 25) -1576 NM_198252 2934 Hs.522373 NM_000177 ENSG00000148180 GSN ADF|AGEL gelsolin protein-coding 204.167-2 chr1 99265237 99265481 + 1.16667 NA intron (NM_014839, intron 1 of 6) intron (NM_014839, intron 1 of 6) 1067 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 353.5-6 chr5 82144536 82144984 + 1.16667 NA intron (NM_031482, intron 3 of 7) L1MEf|LINE|L1 133594 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 175.833-44 chr8 103293461 103293650 + 1.16667 NA intron (NR_148215, intron 1 of 3) intron (NR_148215, intron 1 of 3) -4939 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 185-20 chr15 91744027 91744342 + 1.16667 NA Intergenic Intergenic -109524 NM_013272 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 114.167-90 chr7 111220771 111220937 + 1.16667 NA intron (NM_032549, intron 3 of 5) MLT2B1|LTR|ERVL 129727 NM_018334 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 117.667-32 chr12 31526307 31526440 + 1.16667 NA intron (NM_001308339, intron 1 of 22) intron (NM_001308339, intron 1 of 22) -63550 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 207.834 chr1 118180262 118180472 + 1.16667 NA intron (NM_206996, intron 1 of 48) L1MA4|LINE|L1 4861 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 146.834-3 chr20 32794872 32795074 + 1.16667 NA intron (NM_006892, intron 10 of 22) intron (NM_006892, intron 10 of 22) 15121 NM_175850 1789 Hs.643024 NM_006892 ENSG00000088305 DNMT3B ICF|ICF1|M.HsaIIIB DNA methyltransferase 3 beta protein-coding 210.5-30 chr3 26751122 26751517 + 1.16667 NA Intergenic MER33|DNA|hAT-Charlie 56762 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 170.667-41 chr3 103916497 103916680 + 1.16667 NA Intergenic L1MC3|LINE|L1 -392472 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 272.167-22 chr5 105029235 105029585 + 1.16667 NA Intergenic Intergenic -70064 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 150.5-75 chr8 61863567 61863797 + 1.16667 NA Intergenic L1ME1|LINE|L1 -26157 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 174.5-36 chr5 42308086 42308303 + 1.16667 NA Intergenic Intergenic -115245 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 247.001-3 chr9 12277003 12277422 + 1.16667 NA Intergenic Intergenic -416173 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 260.334-5 chr5 151471086 151471821 + 1.16667 NA TTS (NM_001308151) TTS (NM_001308151) 23850 NM_001308150 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 211-14 chr13 78662381 78662682 + 1.16667 NA Intergenic Intergenic -3376 NM_024546 79596 Hs.567576 NM_024546 ENSG00000152193 OBI1 C13orf7|RNF219 ORC ubiquitin ligase 1 protein-coding 204.834-5 chr2 59833912 59834088 + 1.16667 NA Intergenic Intergenic 549036 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 304 chr1 78603617 78603993 + 1.16667 NA Intergenic L2c|LINE|L2 -16643 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 147.5-16 chr11 28061986 28062138 + 1.16667 NA intron (NM_031217, intron 12 of 16) intron (NM_031217, intron 12 of 16) 5247 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 182-12 chr11 104685992 104686304 + 1.16667 NA Intergenic L1MC4|LINE|L1 -76846 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 244.667-33 chr9 90279220 90279564 + 1.16667 NA Intergenic L1MB2|LINE|L1 154097 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 226.001 chr14 22524640 22524858 + 1.16667 NA Intergenic L3|LINE|CR1 32313 NR_146543 105370400 NR_146543 ENSG00000259054 LINC02332 - long intergenic non-protein coding RNA 2332 ncRNA 207.167-19 chr21 18467830 18468066 + 1.16667 NA Intergenic A-rich|Low_complexity|Low_complexity -64163 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 265.667-12 chr22 19374609 19374919 + 1.16667 NA intron (NM_003325, intron 15 of 24) intron (NM_003325, intron 15 of 24) 56969 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 237-12 chr21 24309258 24309638 + 1.16667 NA intron (NR_109963, intron 1 of 3) MSTB1-int|LTR|ERVL-MaLR 11929 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 155.167-30 chr3 57423617 57423762 + 1.16667 NA intron (NM_001366028, intron 35 of 73) intron (NM_001366028, intron 35 of 73) 120655 NM_198564 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein axonemal heavy chain 12 protein-coding 258.833-17 chr7 32562978 32563371 + 1.16667 NA intron (NM_015060, intron 10 of 15) AluSx1|SINE|Alu 67685 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 142.834-2 chr12 129979334 129979643 + 1.16667 NA Intergenic Intergenic 62854 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 155.833-54 chr5 52617160 52617382 + 1.16667 NA Intergenic Intergenic -170645 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 149-28 chr14 59537103 59537344 + 1.16667 NA intron (NM_001164399, intron 13 of 19) L1M7|LINE|L1 39589 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 284.167-13 chr22 27961930 27962266 + 1.16667 NA intron (NR_026963, intron 2 of 4) intron (NR_026963, intron 2 of 4) -41486 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 282-6 chr10 81938364 81938992 + 1.16667 NA intron (NR_163253, intron 2 of 10) L1MB1|LINE|L1 60991 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 357.167-3 chr5 19777720 19778433 + 1.16667 NA intron (NM_001349559, intron 3 of 12) L1MEd|LINE|L1 108196 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 283.667-8 chr14 53989362 53989715 + 1.16667 NA Intergenic Intergenic -32647 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 167.334-5 chr6 25316730 25316965 + 1.16667 NA intron (NM_001173977, intron 2 of 36) intron (NM_001173977, intron 2 of 36) 37473 NM_017640 55604 Hs.649550 NM_017640 ENSG00000079691 CARMIL1 CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 capping protein regulator and myosin 1 linker 1 protein-coding 244.5-11 chr17 72691481 72691861 + 1.16667 NA intron (NM_001352692, intron 7 of 9) Charlie13b|DNA|hAT-Charlie -51199 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 258.334 chr15 91244535 91244804 + 1.16667 NA intron (NM_001323033, intron 2 of 10) intron (NM_001323033, intron 2 of 10) 142873 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 248.501 chr14 43070015 43070263 + 1.16667 NA Intergenic L1MEc|LINE|L1 1437144 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 346.833-4 chr4 12601288 12601761 + 1.16667 NA Intergenic L1PA10|LINE|L1 378073 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 134.833-70 chr8 137604679 137604935 + 1.16667 NA Intergenic Intergenic -191219 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 205.167-10 chr12 61856881 61857313 + 1.16667 NA intron (NM_178539, intron 2 of 4) (TATTTTA)n|Simple_repeat|Simple_repeat 335742 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 119.167-34 chr18 9555552 9555710 + 1.16667 NA intron (NR_052003, intron 15 of 19) L1MC4|LINE|L1 58928 NM_001042388 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 352.5 chr1 174820814 174821421 + 1.16667 NA intron (NM_001366446, intron 19 of 25) intron (NM_001366446, intron 19 of 25) 21379 NM_001366454 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 165-15 chr12 66658186 66658387 + 1.16667 NA intron (NM_001366724, intron 1 of 23) intron (NM_001366724, intron 1 of 23) 20790 NM_021150 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 195.333-36 chr3 122032294 122032508 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -10154 NM_175924 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 219.334-7 chr6 51584165 51584432 + 1.16667 NA Intergenic AluJo|SINE|Alu -37572 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 343.334-3 chr4 83315650 83316060 + 1.16667 NA intron (NM_001098540, intron 3 of 11) intron (NM_001098540, intron 3 of 11) 18958 NM_001199830 10855 Hs.44227 NM_006665 ENSG00000173083 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 448.5-2 chr18 4039106 4039996 + 1.16667 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 77198 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 249-23 chr9 123302807 123303158 + 1.16667 NA Intergenic Intergenic -34396 NM_018387 55342 Hs.287659 NM_018387 ENSG00000165209 STRBP HEL162|ILF3L|SPNR|p74 spermatid perinuclear RNA binding protein protein-coding 117.833-38 chr17 70868741 70868933 + 1.16667 NA Intergenic Intergenic 333342 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 162.667-77 chr7 30850093 30850333 + 1.16667 NA intron (NR_037598, intron 11 of 19) intron (NR_037598, intron 11 of 19) -61481 NM_198098 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 236.001-2 chr3 103514409 103514714 + 1.16667 NA Intergenic MER72|LTR|ERV1 9555 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 216.333-24 chr20 52789928 52790205 + 1.16667 NA Intergenic MIR|SINE|MIR 169228 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 338-13 chr8 107726067 107726686 + 1.16667 NA Intergenic AluY|SINE|Alu -228458 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 267.334-3 chr15 56503864 56504141 + 1.16667 NA Intergenic L1M3f|LINE|L1 -38865 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 291.5-13 chr2 133749923 133750643 + 1.16667 NA Intergenic Intergenic -181820 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 537.834 chr14 30693169 30693900 + 1.16667 NA intron (NM_016106, intron 14 of 24) intron (NM_016106, intron 14 of 24) 71215 NM_001257376 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 254.501 chr8 139723164 139723409 + 1.16667 NA Intergenic L1ME3D|LINE|L1 -20163 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 174.834-3 chr20 53336674 53336841 + 1.16667 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 151474 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 120.667-2 chr1 36076834 36077022 + 1.16667 NA Intergenic Intergenic -7166 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 199.334-8 chr4 164021114 164021338 + 1.16667 NA intron (NM_001166373, intron 2 of 7) LTR33|LTR|ERVL 176485 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 190.834-2 chr12 22580700 22580929 + 1.16667 NA Intergenic Intergenic -36268 NM_014802 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 206.334-2 chr1 165623190 165623645 + 1.16667 NA Intergenic L1MC4|LINE|L1 -7817 NM_004528 4259 Hs.191734 NM_004528 ENSG00000143198 MGST3 GST-III microsomal glutathione S-transferase 3 protein-coding 168.834-5 chr3 19964015 19964197 + 1.16667 NA intron (NM_001292048, intron 2 of 5) intron (NM_001292048, intron 2 of 5) 17009 NM_004162 5868 Hs.475663 NM_004162 ENSG00000144566 RAB5A RAB5 RAB5A, member RAS oncogene family protein-coding 220.334-11 chr8 131854509 131854726 + 1.16667 NA Intergenic L2a|LINE|L2 -49476 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 154.334 chr1 198282465 198282679 + 1.16667 NA intron (NM_133494, intron 7 of 9) MIRc|SINE|MIR 125574 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 212.5-23 chr5 60521430 60521656 + 1.16667 NA non-coding (NR_028509, exon 2 of 2) non-coding (NR_028509, exon 2 of 2) -25257 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 121.5-69 chr3 178194682 178194966 + 1.16667 NA Intergenic Intergenic -224377 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 216.834-7 chr8 108761242 108761522 + 1.16667 NA intron (NR_136411, intron 1 of 3) MIR|SINE|MIR 26212 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 304.167 chr1 88807344 88807659 + 1.16667 NA intron (NM_006256, intron 13 of 21) intron (NM_006256, intron 13 of 21) 84066 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 259.167-7 chr3 4351112 4351396 + 1.16667 NA Intergenic Intergenic 47950 NM_006515 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 196.834-3 chr2 64123255 64123504 + 1.16667 NA intron (NM_020651, intron 1 of 6) L1MB8|LINE|L1 21041 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 186.667-10 chr11 60570537 60570909 + 1.16667 NA Intergenic L1MB4|LINE|L1 -45028 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 128.5-60 chr5 24381639 24381844 + 1.16667 NA Intergenic Intergenic 263237 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 130-24 chr12 24322426 24322542 + 1.16667 NA intron (NM_152989, intron 3 of 17) intron (NM_152989, intron 3 of 17) 99213 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 225.5-50 chrX 148366443 148366784 + 1.16667 NA Intergenic Intergenic -134004 NM_001169123 2334 Hs.496911 NM_002025 ENSG00000155966 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family member 2 protein-coding 134.167-6 chr1 213132395 213132629 + 1.16667 NA intron (NM_001136138, intron 5 of 13) intron (NM_001136138, intron 5 of 13) 81271 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 307.334-6 chr9 26869534 26869901 + 1.16667 NA intron (NM_001167575, intron 4 of 5) Tigger13a|DNA|TcMar-Tigger 23085 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 205.333-42 chr4 57030640 57030919 + 1.16667 NA TTS (NM_001553) TTS (NM_001553) 51883 NM_000938 5431 Hs.602757 NM_000938 ENSG00000047315 POLR2B POL2RB|RPB2|hRPB140 RNA polymerase II subunit B protein-coding 167.334-2 chr17 33391071 33391528 + 1.16667 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -98311 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 229.167-24 chr3 196553223 196553482 + 1.16667 NA TTS (NM_001345906) TTS (NM_001345906) 15202 NM_001345918 348793 Hs.385865 NM_182627 ENSG00000185798 WDR53 - WD repeat domain 53 protein-coding 177.667-26 chr14 64079020 64079255 + 1.16667 NA intron (NM_015180, intron 55 of 114) intron (NM_015180, intron 55 of 114) 15988 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 413.834 chr7 92745869 92746448 + 1.16667 NA intron (NM_001259, intron 3 of 7) L1ME3G|LINE|L1 87801 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 177.667-41 chr2 144491738 144491985 + 1.16667 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -27753 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 380.667-3 chr14 63274212 63274836 + 1.16667 NA intron (NM_020663, intron 2 of 4) intron (NM_020663, intron 2 of 4) 44411 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 280-13 chr5 128189769 128190203 + 1.16667 NA TTS (NR_046207) TTS (NR_046207) 106220 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 334.5-6 chr18 77770561 77771119 + 1.16667 NA Intergenic Intergenic 222887 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 183.167-53 chr6 83003186 83003388 + 1.16667 NA intron (NR_146807, intron 9 of 10) intron (NR_146807, intron 9 of 10) 62554 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 175.5-58 chr8 52901230 52901551 + 1.16667 NA Intergenic LTR16A|LTR|ERVL -38518 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 175.167-29 chr20 8013788 8014026 + 1.16667 NA intron (NM_021156, intron 1 of 7) intron (NM_021156, intron 1 of 7) 5854 NM_021156 56255 Hs.169358 NM_021156 ENSG00000125827 TMX4 DJ971N18.2|PDIA14|TXNDC13 thioredoxin related transmembrane protein 4 protein-coding 224.667-31 chr7 458178 458486 + 1.16667 NA Intergenic Intergenic 61512 NM_033023 5154 Hs.535898 NM_002607 ENSG00000197461 PDGFA PDGF-A|PDGF1 platelet derived growth factor subunit A protein-coding 253.167-10 chr5 53404474 53404715 + 1.16667 NA Intergenic Intergenic -76035 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 221-11 chr14 35436874 35437155 + 1.16667 NA Intergenic AluSx1|SINE|Alu -32260 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA EDAID2|IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 204.834-3 chr13 33546355 33546869 + 1.16667 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 130182 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 257-5 chr11 56441112 56441498 + 1.16667 NA Intergenic LTR1D|LTR|ERV1 22096 NM_001004743 390162 Hs.553749 NM_001004743 ENSG00000150269 OR5M9 OR11-190 olfactory receptor family 5 subfamily M member 9 protein-coding 332.501-2 chr6 55401622 55401976 + 1.16667 NA exon (NM_207410, exon 9 of 9) exon (NM_207410, exon 9 of 9) 74330 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 349.667-8 chr9 106506127 106506660 + 1.16667 NA Intergenic Intergenic -94535 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 227.334-6 chr18 68663881 68664075 + 1.16667 NA Intergenic Intergenic 51130 NM_001350517 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 123 chr1 91661278 91661428 + 1.16667 NA Intergenic MIR3|SINE|MIR 160245 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 135.334-5 chr20 11947439 11947644 + 1.16667 NA Intergenic Intergenic 29648 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 152.5-27 chr2 121756388 121756566 + 1.16667 NA intron (NR_048559, intron 1 of 3) intron (NR_048559, intron 1 of 3) 826 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 392.501-2 chr5 167345007 167345797 + 1.16667 NA intron (NM_001122679, intron 2 of 29) intron (NM_001122679, intron 2 of 29) -177001 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 170.834-6 chr21 31350028 31350364 + 1.16667 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -5842 NM_001353686 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 206-4 chr11 12290926 12291151 + 1.16667 NA intron (NM_032867, intron 1 of 8) intron (NM_032867, intron 1 of 8) 4138 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 219.5-12 chr16 13673763 13673990 + 1.16667 NA Intergenic Intergenic -246281 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 314.667-2 chr14 63097769 63098412 + 1.16667 NA Intergenic L1M5|LINE|L1 -52632 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 118.334-6 chr7 22136386 22136490 + 1.16667 NA intron (NM_001367601, intron 12 of 13) intron (NM_001367601, intron 12 of 13) 57307 NM_001367603 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 122.167-56 chr5 64075421 64075614 + 1.16667 NA Intergenic Intergenic -90326 NM_178532 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 128.167-76 chr6 137435359 137435597 + 1.16667 NA Intergenic L1MA9|LINE|L1 58916 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 224.667-8 chr12 21184199 21184470 + 1.16667 NA intron (NM_006446, intron 7 of 14) L1P4a|LINE|L1 53140 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 135.667-65 chr22 26915280 26915407 + 1.16667 NA intron (NR_110540, intron 2 of 2) MIRb|SINE|MIR 12051 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 155.834-7 chrX 68033352 68033584 + 1.16667 NA Intergenic L1MA4A|LINE|L1 400027 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 203.167-15 chr13 109366939 109367385 + 1.16667 NA Intergenic Intergenic -33534 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 136.5 chr1 31330943 31331100 + 1.16667 NA intron (NM_001282571, intron 3 of 6) intron (NM_001282571, intron 3 of 6) 34039 NM_001282572 51538 Hs.524094 NM_016505 ENSG00000121766 ZCCHC17 HSPC251|PS1D|pNO40 zinc finger CCHC-type containing 17 protein-coding 300.001 chr10 72750581 72750868 + 1.16667 NA intron (NR_073062, intron 3 of 9) L1ME1|LINE|L1 29695 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 223.667-31 chr8 90470343 90470632 + 1.16667 NA Intergenic Intergenic 135576 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 194.833-4 chr10 61878598 61878858 + 1.16667 NA Intergenic Intergenic -22971 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 165.333-60 chr7 41267072 41267290 + 1.16667 NA Intergenic Intergenic 165577 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 232.334 chr12 82479166 82479377 + 1.16667 NA TTS (NR_144940) TTS (NR_144940) -120466 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 159.167-57 chr6 62301900 62302252 + 1.16667 NA Intergenic Intergenic -15849 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 176.667-19 chr12 32798493 32798668 + 1.16667 NA intron (NM_001005242, intron 10 of 12) L1PB2|LINE|L1 -42683 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 194.667-39 chr3 38218378 38218581 + 1.16667 NA intron (NM_005109, intron 5 of 17) L1MB3|LINE|L1 -47333 NM_004256 9390 Hs.225941 NM_004256 ENSG00000172940 SLC22A13 OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3 solute carrier family 22 member 13 protein-coding 248-17 chr5 44738058 44738444 + 1.16667 NA Intergenic L1PREC2|LINE|L1 70542 NR_109862 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 197.167-17 chr16 76725343 76725595 + 1.16667 NA Intergenic Intergenic 90471 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 162-47 chr3 195904557 195904772 + 1.16667 NA intron (NM_005781, intron 1 of 14) L1MB3|LINE|L1 -3412 NR_145450 100128262 Hs.605240 NR_145450 TNK2-AS1 - TNK2 antisense RNA 1 ncRNA 169.834-7 chr4 76911305 76911489 + 1.16667 NA Intergenic Tigger4b|DNA|TcMar-Tigger -13253 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 282.834 chr2 137030362 137030918 + 1.16667 NA intron (NM_001316349, intron 2 of 27) L1PB3|LINE|L1 265095 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 137.834-5 chr8 76845954 76846130 + 1.16667 NA intron (NM_024721, intron 6 of 10) intron (NM_024721, intron 6 of 10) 120808 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 192.833 chr1 29714757 29715075 + 1.16667 NA Intergenic L1MB3|LINE|L1 322696 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 172.167-32 chr3 7513858 7514040 + 1.16667 NA intron (NM_000844, intron 7 of 9) intron (NM_000844, intron 7 of 9) 21335 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 227.833-9 chr2 117356393 117356742 + 1.16667 NA Intergenic MIR|SINE|MIR -458124 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 146-37 chr2 138200518 138200729 + 1.16667 NA Intergenic Intergenic 98739 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 261.167-12 chr2 179701185 179701485 + 1.16667 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) -41141 NM_001352812 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 311.5-4 chr14 54929290 54930117 + 1.16667 NA Intergenic Intergenic -26877 NM_001024071 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 207-5 chr11 39456998 39457213 + 1.16667 NA Intergenic Intergenic 808247 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 196.667-18 chr16 80336919 80337112 + 1.16667 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -203719 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 252.833-4 chr12 116293874 116294420 + 1.16667 NA Intergenic Intergenic -16961 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 188.667-50 chr5 121397001 121397346 + 1.16667 NA Intergenic L1ME1|LINE|L1 74623 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 342-6 chr2 111648605 111648990 + 1.16667 NA Intergenic L1MB4|LINE|L1 122337 NR_039929 100616165 NR_039929 ENSG00000266063 MIR4771-2 - microRNA 4771-2 ncRNA 159.833-8 chr1 159654449 159654720 + 1.16667 NA Intergenic (TATAT)n|Simple_repeat|Simple_repeat 60005 NM_001329057 1401 Hs.76452 NM_000567 ENSG00000132693 CRP PTX1 C-reactive protein protein-coding 228.167-17 chr4 26673793 26674178 + 1.16667 NA intron (NM_001292054, intron 8 of 17) intron (NM_001292054, intron 8 of 17) 89901 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 189.5-46 chr4 112925721 112925899 + 1.16667 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) 64823 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 146.667-35 chr14 72760900 72761100 + 1.16667 NA intron (NM_001280544, intron 2 of 9) L1ME1|LINE|L1 131649 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 220-13 chr2 96593079 96593413 + 1.16667 NA TTS (NM_001349260) TTS (NM_001349260) 44745 NR_047658 55683 Hs.516341 NM_017991 ENSG00000114982 KANSL3 KIAA1310|NSL3|Rcd1 KAT8 regulatory NSL complex subunit 3 protein-coding 266.167-4 chr1 180680044 180680325 + 1.16667 NA intron (NR_137330, intron 1 of 12) L1MA5A|LINE|L1 48162 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 379-3 chr2 105225911 105226428 + 1.16667 NA Intergenic AluJb|SINE|Alu -15574 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 145.667-31 chr14 67730117 67730330 + 1.16667 NA intron (NM_152443, intron 8 of 8) MIR|SINE|MIR 28337 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 237.5 chr1 59340494 59340768 + 1.16667 NA intron (NM_001350797, intron 3 of 14) intron (NM_001350797, intron 3 of 14) 30599 NM_001350799 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 186.5-38 chr2 60531381 60531590 + 1.16667 NA intron (NM_138559, intron 2 of 4) intron (NM_138559, intron 2 of 4) 22013 NM_001363864 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 240.834-8 chr7 48578397 48578799 + 1.16667 NA intron (NM_152701, intron 55 of 61) L1MCa|LINE|L1 -345949 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 260.834-5 chr5 19973199 19973545 + 1.16667 NA intron (NM_001349562, intron 2 of 13) L1ME3A|LINE|L1 14828 NM_004934 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 233.834-4 chr11 115653905 115654267 + 1.16667 NA Intergenic Intergenic 80676 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 265.167-12 chr6 63185904 63186242 + 1.16667 NA Intergenic Intergenic 133904 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 235.667-11 chr2 100604314 100604598 + 1.16667 NA intron (NR_146956, intron 1 of 2) intron (NR_146956, intron 1 of 2) 717 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 305.5-12 chr8 140244039 140244779 + 1.16667 NA intron (NM_001160372, intron 16 of 22) intron (NM_001160372, intron 16 of 22) -143874 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 135.833-6 chr11 75512381 75512680 + 1.16667 NA intron (NM_030792, intron 1 of 16) intron (NM_030792, intron 1 of 16) 13043 NM_001351168 81544 Hs.503297 NM_030792 ENSG00000158555 GDPD5 GDE2|PP1665 glycerophosphodiester phosphodiesterase domain containing 5 protein-coding 131.834-7 chr4 126431525 126431769 + 1.16667 NA Intergenic Intergenic 924388 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 248.333-13 chr8 94988841 94989319 + 1.16667 NA non-coding (NR_148904, exon 6 of 6) non-coding (NR_148904, exon 6 of 6) -35895 NR_148911 137682 Hs.435500 NM_152416 ENSG00000156170 NDUFAF6 C8orf38|MC1DN17 NADH:ubiquinone oxidoreductase complex assembly factor 6 protein-coding 217.667-44 chr7 9426054 9426788 + 1.16667 NA Intergenic Intergenic -207849 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 157.834 chr10 4495704 4495861 + 1.16667 NA Intergenic AluSq2|SINE|Alu 89313 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 239.001 chr7 86967658 86968125 + 1.16667 NA intron (NM_001142749, intron 1 of 21) intron (NM_001142749, intron 1 of 21) -1992 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 125-12 chr10 71469452 71469639 + 1.16667 NA intron (NM_052836, intron 3 of 12) L1ME1|LINE|L1 42375 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 207.5-2 chr1 230629329 230629674 + 1.16667 NA Intergenic MER74A|LTR|ERVL -12980 NM_007357 22796 Hs.211800 NM_007357 ENSG00000135775 COG2 CDG2Q|LDLC component of oligomeric golgi complex 2 protein-coding 126.333-30 chr14 51690076 51690284 + 1.16667 NA intron (NM_001042481, intron 3 of 14) intron (NM_001042481, intron 3 of 14) -27103 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 170-82 chr8 115679027 115679499 + 1.16667 NA Intergenic Intergenic -10288 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 233.333-30 chr3 79744248 79744536 + 1.16667 NA intron (NM_002941, intron 1 of 30) MLT1A0|LTR|ERVL-MaLR 23606 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 269.001 chr12 77966745 77967152 + 1.16667 NA intron (NM_001024383, intron 4 of 39) intron (NM_001024383, intron 4 of 39) 136054 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 237.334-7 chr4 93291390 93291667 + 1.16667 NA intron (NM_001286838, intron 7 of 14) intron (NM_001286838, intron 7 of 14) -537225 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 351.167 chr1 29095066 29095584 + 1.16667 NA intron (NM_001166007, intron 13 of 17) intron (NM_001166007, intron 13 of 17) 27176 NM_001171868 399474 Hs.712722 NM_001003682 ENSG00000253304 TMEM200B TTMB transmembrane protein 200B protein-coding 192.667-53 chr7 106428684 106428964 + 1.16667 NA Intergenic Intergenic -143841 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 451.334 chr1 156683927 156684538 + 1.16667 NA Intergenic AluSx|SINE|Alu -6825 NM_006617 10763 Hs.527971 NM_006617 ENSG00000132688 NES Nbla00170 nestin protein-coding 211.333-10 chr11 58269272 58269687 + 1.16667 NA Intergenic L2a|LINE|L2 -1219 NM_207374 81341 Hs.531507 NM_207374 ENSG00000172772 OR10W1 OR10W1P|OR10W1Q|OR11-236|UNQ6469 olfactory receptor family 10 subfamily W member 1 protein-coding 355.001 chr3 146681291 146681764 + 1.16667 NA Intergenic Intergenic -75311 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 145.333-53 chr3 178411314 178411511 + 1.16667 NA Intergenic Intergenic -7789 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 212-5 chr12 1772360 1772815 + 1.16667 NA intron (NM_024551, intron 2 of 7).2 intron (NM_024551, intron 2 of 7).2 -47680 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 151.667-50 chr2 210470203 210470353 + 1.16667 NA TTS (NR_110604) TTS (NR_110604) 6427 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 331.667-2 chr14 66911253 66911757 + 1.16667 NA intron (NM_001024218, intron 5 of 21) L1ME3D|LINE|L1 -277935 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 240-3 chr10 60995307 60995657 + 1.16667 NA intron (NM_001350902, intron 1 of 11) intron (NM_001350902, intron 1 of 11) 5515 NM_001350908 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 219.5 chr1 71883641 71883987 + 1.16667 NA intron (NM_173808, intron 2 of 6) L1PA5|LINE|L1 -46802 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 259.334-4 chr5 13601901 13602165 + 1.16667 NA Intergenic Intergenic 342447 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 148.333-69 chr3 133262974 133263148 + 1.16667 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) -5940 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 159.833-10 chr10 16164109 16164444 + 1.16667 NA Intergenic L1MB4|LINE|L1 -272667 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 184.667-14 chr11 110925001 110925208 + 1.16667 NA Intergenic Intergenic 172214 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 162-75 chr8 138818657 138818836 + 1.16667 NA intron (NM_152888, intron 7 of 64) intron (NM_152888, intron 7 of 64) 95295 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 174.334-3 chr5 13175682 13175868 + 1.16667 NA Intergenic Intergenic -142889 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 188.833-25 chr4 58721575 58721882 + 1.16667 NA Intergenic Intergenic -185400 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 160.5-5 chr10 57431316 57431508 + 1.16667 NA Intergenic Intergenic -126853 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 268.333 chr1 67727126 67727451 + 1.16667 NA intron (NM_018841, intron 2 of 3) Helitron1Na_Mam|RC|Helitron 42087 NM_001199742 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 193.167-11 chr11 10068253 10068441 + 1.16667 NA intron (NM_030962, intron 2 of 39) intron (NM_030962, intron 2 of 39) 225860 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 138.5-29 chr14 80127928 80128110 + 1.16667 NA Intergenic MLT1K|LTR|ERVL-MaLR -83400 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 201.667-26 chr4 75584734 75585223 + 1.16667 NA intron (NM_003948, intron 10 of 11) L1MEf|LINE|L1 28912 NR_046429 152816 Hs.24510 NM_178497 ENSG00000174792 ODAPH AI2A4|C4orf26 odontogenesis associated phosphoprotein protein-coding 268.5 chr14 70722992 70723376 + 1.16667 NA 3' UTR (NM_001284230, exon 12 of 12) 3' UTR (NM_001284230, exon 12 of 12) 24486 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 328.667 chr10 33497304 33497894 + 1.16667 NA Intergenic Intergenic -162694 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 227-26 chr8 134568525 134568789 + 1.16667 NA intron (NM_020863, intron 10 of 15) intron (NM_020863, intron 10 of 15) -29414 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 213.667-10 chr14 70920715 70920996 + 1.16667 NA intron (NM_014982, intron 1 of 35) intron (NM_014982, intron 1 of 35) 13396 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 264.167-7 chr11 131540380 131540658 + 1.16667 NA intron (NR_110140, intron 2 of 7) intron (NR_110140, intron 2 of 7) 348 NR_110140 101929653 Hs.559159 NR_110140 ENSG00000237654 LOC101929653 - uncharacterized LOC101929653 ncRNA 328-6 chr17 51348380 51348881 + 1.16667 NA Intergenic MLT1F2|LTR|ERVL-MaLR 11915 NR_122104 440446 Hs.626751 NR_122104 ENSG00000267452 LINC02072 - long intergenic non-protein coding RNA 2072 ncRNA 223.834-7 chr4 57268607 57268821 + 1.16667 NA Intergenic Intergenic -157158 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 139.334-9 chr6 137103491 137103658 + 1.16667 NA Intergenic Intergenic -58394 NM_001278723 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 135.834-4 chr8 61407765 61407925 + 1.16667 NA intron (NM_173519, intron 3 of 5) intron (NM_173519, intron 3 of 5) 119875 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 207.667-7 chr12 22086523 22086883 + 1.16667 NA Intergenic Intergenic 40485 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 391.834-2 chr8 129919249 129919768 + 1.16667 NA intron (NM_001353256, intron 2 of 13) L2c|LINE|L2 20303 NM_001353313 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 173.5-39 chr3 162611323 162611667 + 1.16667 NA Intergenic Intergenic 691806 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 245.834 chr1 42972037 42972300 + 1.16667 NA intron (NR_033967, intron 2 of 3) AluJo|SINE|Alu 13119 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 154.334-4 chr19 55513933 55514195 + 1.16667 NA intron (NM_001144950, intron 13 of 13) L1M5|LINE|L1 23069 NM_001370096 646643 Hs.532676 NM_001101401 ENSG00000187550 SBK2 SGK069 SH3 domain binding kinase family member 2 protein-coding 203.667-7 chr11 35805611 35805866 + 1.16667 NA intron (NM_017583, intron 4 of 4) L2a|LINE|L2 -138243 NM_001304263 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 280.667-5 chr12 15996682 15997000 + 1.16667 NA intron (NM_015954, intron 6 of 8) intron (NM_015954, intron 6 of 8) 85509 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 205.667-9 chr12 7432874 7433089 + 1.16667 NA intron (NM_174941, intron 3 of 19) intron (NM_174941, intron 3 of 19) 11204 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 153.333-52 chr3 97486031 97486365 + 1.16667 NA intron (NM_001080448, intron 10 of 17) intron (NM_001080448, intron 10 of 17) 46591 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 207.167-10 chr12 62087048 62087253 + 1.16667 NA intron (NM_178539, intron 1 of 4) L1MB3|LINE|L1 105689 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 204.833-18 chr3 133669541 133669878 + 1.16667 NA intron (NM_001354703, intron 1 of 22) MLT1J1|LTR|ERVL-MaLR 7711 NM_001354703 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 292.167-4 chr2 138403153 138403489 + 1.16667 NA Intergenic L1MC1|LINE|L1 -98449 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 160.5-8 chr10 119330225 119330675 + 1.16667 NA intron (NM_005308, intron 2 of 15) MLT1A0|LTR|ERVL-MaLR -47522 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 233.834-9 chr2 44905604 44905951 + 1.16667 NA Intergenic Intergenic 33111 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 170.167-39 chr3 42597827 42597982 + 1.16667 NA TTS (NM_001370300) TTS (NM_001370300) -2782 NM_005385 4820 Hs.529509 NM_005385 ENSG00000114857 NKTR p104 natural killer cell triggering receptor protein-coding 247.167-3 chr10 131615069 131615358 + 1.16667 NA Intergenic L1MEd|LINE|L1 174986 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 313.834-4 chr5 166005338 166005833 + 1.16667 NA Intergenic Intergenic 920785 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 186.5-48 chr4 38667228 38667490 + 1.16667 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -2731 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 134.5-33 chr14 79250524 79250685 + 1.16667 NA intron (NR_073547, intron 14 of 20) MIRb|SINE|MIR -28776 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 121.167-24 chr13 94438810 94438963 + 1.16667 NA 3' UTR (NM_001322183, exon 8 of 8) 3' UTR (NM_001322183, exon 8 of 8) 40796 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 209.667-11 chr15 26322355 26322671 + 1.16667 NA Intergenic Intergenic 206700 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 196-34 chr2 101773576 101773933 + 1.16667 NA intron (NM_145686, intron 2 of 30) L1MA2|LINE|L1 76047 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 146.5-44 chr2 72657768 72657980 + 1.16667 NA intron (NR_135774, intron 6 of 19) intron (NR_135774, intron 6 of 19) 168159 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 359.501 chr2 148819714 148820240 + 1.16667 NA Intergenic L1ME2|LINE|L1 -55250 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 214-17 chr2 13625086 13625311 + 1.16667 NA Intergenic L1MD2|LINE|L1 -618185 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 211.167-34 chr8 79625176 79625504 + 1.16667 NA intron (NM_007029, intron 1 of 4) MIR|SINE|MIR 14223 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 196.167-8 chr11 106222220 106222498 + 1.16667 NA Intergenic L2b|LINE|L2 -27660 NR_120552 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 250.5-15 chr2 190284857 190285238 + 1.16667 NA intron (NM_198047, intron 6 of 12) L1M6|LINE|L1 34779 NM_014362 26275 Hs.656685 NM_014362 ENSG00000198130 HIBCH HIBYLCOAH 3-hydroxyisobutyryl-CoA hydrolase protein-coding 136-23 chr14 56122078 56122209 + 1.16667 NA intron (NM_021255, intron 1 of 5) L1PA7|LINE|L1 3732 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 154-50 chr3 81204728 81204970 + 1.16667 NA Intergenic Intergenic 210981 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 165.667-26 chr15 56747916 56748125 + 1.16667 NA Intergenic Intergenic -13934 NM_001002843 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 231.667-17 chr2 4554455 4554823 + 1.16667 NA Intergenic MIR3|SINE|MIR 101583 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 257.667-6 chr17 72795988 72796217 + 1.16667 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -155630 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 167.834-3 chr4 131153104 131153409 + 1.16667 NA Intergenic MER2|DNA|TcMar-Tigger -611582 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 127.667 chr1 26443039 26443246 + 1.16667 NA intron (NM_001243565, intron 4 of 7) intron (NM_001243565, intron 4 of 7) 10821 NM_205861 79947 Hs.369385 NM_024887 ENSG00000117682 DHDDS CIT|CPT|DEDSM|DS|HDS|RP59|hCIT dehydrodolichyl diphosphate synthase subunit protein-coding 201-48 chr9 30745485 30745800 + 1.16667 NA Intergenic Intergenic -337188 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 327-9 chr8 125172852 125173365 + 1.16667 NA intron (NR_146191, intron 5 of 8) ERVL-E-int|LTR|ERVL 81248 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 202-21 chr20 36284039 36284279 + 1.16667 NA Intergenic L1ME3|LINE|L1 -22180 NM_014902 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 157.333-63 chr5 144567099 144567347 + 1.16667 NA Intergenic L1HS|LINE|L1 361832 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 194.5-26 chr4 36633961 36634198 + 1.16667 NA intron (NR_149124, intron 1 of 4) L1MA9|LINE|L1 7821 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 292.834-7 chr2 205677384 205677721 + 1.16667 NA Intergenic Intergenic -4948 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 354.334-4 chrX 81317637 81318192 + 1.16667 NA Intergenic L1MA3|LINE|L1 115812 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 117.667-117 chr7 90169298 90169508 + 1.16667 NA intron (NR_110029, intron 2 of 2) L1MEg|LINE|L1 14934 NM_012449 26872 Hs.61635 NM_012449 ENSG00000164647 STEAP1 PRSS24|STEAP STEAP family member 1 protein-coding 268.667-10 chr5 51596532 51596979 + 1.16667 NA Intergenic Intergenic 213307 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 166.167-43 chr5 35798924 35799119 + 1.16667 NA intron (NM_024867, intron 33 of 36) intron (NM_024867, intron 33 of 36) -57870 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 280.001 chr14 65196584 65196857 + 1.16667 NA Intergenic AluSx|SINE|Alu 25627 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 202.667-22 chr2 22234752 22235063 + 1.16667 NA Intergenic Intergenic -301572 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 275.333-11 chr16 64694127 64694551 + 1.16667 NA Intergenic Intergenic 427724 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 198-37 chr20 45629350 45629616 + 1.16667 NA promoter-TSS (NM_080753) promoter-TSS (NM_080753) -256 NM_080753 140832 Hs.199380 NM_080753 ENSG00000180305 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 170-5 chr10 75761056 75761240 + 1.16667 NA intron (NR_131178, intron 1 of 7) L1MB4|LINE|L1 -21613 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 247.001 chr11 45997479 45997857 + 1.16667 NA intron (NR_147890, intron 5 of 18) intron (NR_147890, intron 5 of 18) 75012 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 352.5-6 chr9 86872684 86873281 + 1.16667 NA Intergenic Intergenic 74524 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 277.334-3 chr4 48801808 48802093 + 1.16667 NA Intergenic Intergenic -21651 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 326 chr11 116521568 116521899 + 1.16667 NA Intergenic L1M7|LINE|L1 -117689 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 256.333-21 chr5 12207388 12207741 + 1.16667 NA Intergenic L1PA15|LINE|L1 -303118 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 153-46 chr6 149747889 149748083 + 1.16667 NA Intergenic Intergenic -1457 NR_104456 348995 Hs.510375 NM_024647 ENSG00000120253 NUP43 bA350J20.1|p42 nucleoporin 43 protein-coding 162.167-43 chr5 94752143 94752337 + 1.16667 NA intron (NM_001297777, intron 16 of 19) intron (NM_001297777, intron 16 of 19) 133571 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 203.833-11 chr18 36643562 36643757 + 1.16667 NA intron (NM_001281739, intron 10 of 23) L1ME3F|LINE|L1 19759 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 233.334-7 chr8 86539058 86539432 + 1.16667 NA intron (NM_003909, intron 7 of 16) L1MC4|LINE|L1 24810 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 187.5-12 chr13 92800768 92801095 + 1.16667 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -79317 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 215.667-53 chr9 38326629 38326942 + 1.16667 NA Intergenic L1MEd|LINE|L1 -65917 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 292.667 chr11 74626818 74627098 + 1.16667 NA intron (NM_001363597, intron 8 of 11) Tigger3b|DNA|TcMar-Tigger 34376 NM_001363597 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 178.333-26 chr2 179034785 179035196 + 1.16667 NA intron (NM_001316745, intron 2 of 11) intron (NM_001316745, intron 2 of 11) 15147 NM_173648 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 242-14 chr4 37519597 37520010 + 1.16667 NA intron (NM_001104629, intron 1 of 3) L1MA1|LINE|L1 -64430 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 169-11 chr11 81437223 81437374 + 1.16667 NA Intergenic Intergenic 453538 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 289.001-2 chr2 192844591 192844977 + 1.16667 NA Intergenic L1ME3Cz|LINE|L1 94939 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 163.167-17 chr16 60115970 60116118 + 1.16667 NA Intergenic Intergenic 243749 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 352.334-2 chr4 18718053 18718606 + 1.16667 NA Intergenic Intergenic -696454 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 150.167-51 chr5 42597355 42597567 + 1.16667 NA intron (NM_001242460, intron 1 of 7) MER63B|DNA|hAT-Blackjack 31597 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 216-33 chr8 117953035 117953327 + 1.16667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -32268 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 204.334-2 chr2 11053020 11053212 + 1.16667 NA Intergenic Intergenic 79060 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 197.834 chr14 37911792 37912199 + 1.16667 NA Intergenic L1ME3G|LINE|L1 -9871 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 216.167-23 chr5 73700940 73701373 + 1.16667 NA intron (NM_001177693, intron 2 of 35) intron (NM_001177693, intron 2 of 35) 74998 NM_001080479 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 218-21 chr18 34909684 34909954 + 1.16667 NA Intergenic Intergenic -67109 NM_001143826 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 253-27 chr9 30712188 30712526 + 1.16667 NA Intergenic Intergenic -303903 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 181.5-19 chr14 52778614 52778892 + 1.16667 NA intron (NM_198066, intron 5 of 5) AluJb|SINE|Alu 12854 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 208.167-5 chr13 68043688 68043902 + 1.16667 NA Intergenic Intergenic 671408 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 244.833-14 chr5 39040957 39041332 + 1.16667 NA intron (NM_001285439, intron 2 of 38) intron (NM_001285439, intron 2 of 38) 33255 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 331-12 chr9 27746913 27747458 + 1.16667 NA Intergenic Intergenic -173319 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 115.5-28 chr12 74782778 74782907 + 1.16667 NA Intergenic Intergenic 245007 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 395.334 chr8 85892258 85892639 + 1.16667 NA Intergenic L1M4|LINE|L1 -64506 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 157.667-51 chr4 38147333 38147492 + 1.16667 NA Intergenic MIR|SINE|MIR 27458 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 278.5-11 chr6 62552359 62552957 + 1.16667 NA Intergenic L1MEf|LINE|L1 -266431 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 279-2 chr10 15807963 15808256 + 1.16667 NA intron (NM_024948, intron 10 of 14) intron (NM_024948, intron 10 of 14) 52398 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 288.834-2 chr4 36765066 36765491 + 1.16667 NA Intergenic Intergenic -123378 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 126.834-4 chr5 65636836 65637013 + 1.16667 NA intron (NM_001365342, intron 3 of 10) intron (NM_001365342, intron 3 of 10) 11897 NM_001365343 80006 Hs.591760 NM_024941 ENSG00000113597 TRAPPC13 C5orf44|SHLD3 trafficking protein particle complex 13 protein-coding 129.667-52 chr2 121454904 121455133 + 1.16667 NA intron (NM_015282, intron 14 of 38) intron (NM_015282, intron 14 of 38) -75862 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 154.834-7 chr7 113509155 113509385 + 1.16667 NA Intergenic Intergenic -390688 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 122.167-2 chr1 92680269 92680401 + 1.16667 NA intron (NM_001350198, intron 9 of 19) L1MC4|LINE|L1 104773 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 133.5-29 chr17 47144445 47144647 + 1.16667 NA intron (NM_001256, intron 9 of 18) intron (NM_001256, intron 9 of 18) 44749 NM_001353051 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 289.667-13 chr8 77005241 77005605 + 1.16667 NA Intergenic MIR|SINE|MIR -4379 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 323.334-2 chr1 42039610 42040112 + 1.16667 NA Intergenic MLT1K|LTR|ERVL-MaLR -3927 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 189.833-26 chr7 52975357 52975707 + 1.16667 NA Intergenic Intergenic -60101 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 153.167-18 chr15 60490232 60490473 + 1.16667 NA 3' UTR (NM_002943, exon 11 of 11) 3' UTR (NM_002943, exon 11 of 11) 11174 NR_120339 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 242-24 chr8 30611442 30611862 + 1.16667 NA intron (NM_001348353, intron 5 of 6) L1MEf|LINE|L1 -26928 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 284.334-3 chr2 119038381 119038654 + 1.16667 NA Intergenic L1M5|LINE|L1 96348 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 114.167-12 chr11 22353133 22353241 + 1.16667 NA intron (NM_020346, intron 3 of 11) MIR|SINE|MIR 14806 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 287.334-3 chr8 90440926 90441227 + 1.16667 NA Intergenic Intergenic 164987 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 261.834 chr2 108038328 108038667 + 1.16667 NA Intergenic L1P3|LINE|L1 14258 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 195.667-12 chr14 48128258 48128503 + 1.16667 NA Intergenic Intergenic -333366 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 174-64 chrX 96049386 96049583 + 1.16667 NA Intergenic L1MC4a|LINE|L1 288418 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 191-31 chr2 67375677 67375976 + 1.16667 NA Intergenic Intergenic -21507 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 265.334-16 chr9 127567490 127567773 + 1.16667 NA intron (NM_001035534, intron 1 of 13) intron (NM_001035534, intron 1 of 13) 1442 NM_022833 64855 Hs.522401 NM_022833 ENSG00000136830 NIBAN2 C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6 niban apoptosis regulator 2 protein-coding 206.5-30 chr6 123924229 123924631 + 1.16667 NA intron (NM_001040214, intron 1 of 6) MIRc|SINE|MIR 120565 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 149.5-9 chr10 43933385 43933570 + 1.16667 NA intron (NR_033846, intron 2 of 7) L1MEg|LINE|L1 21075 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 355.334-4 chr9 33307623 33307968 + 1.16667 NA intron (NM_002504, intron 5 of 23) AluJb|SINE|Alu 17279 NM_001318758 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 311.001 chr12 24541356 24541729 + 1.16667 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 20949 NM_001261414 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 143.167-42 chr2 237245008 237245251 + 1.16667 NA Intergenic HERVL-int|LTR|ERVL 159240 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 224-24 chr2 215391164 215391580 + 1.16667 NA intron (NM_212482, intron 26 of 45) intron (NM_212482, intron 26 of 45) 44696 NM_212482 2335 Hs.203717 NM_002026 ENSG00000115414 FN1 CIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF|SMDCF fibronectin 1 protein-coding 170.5-28 chr2 9011695 9011892 + 1.16667 NA Intergenic Intergenic -8109 NR_135600 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 221.667-9 chr11 8543280 8543511 + 1.16667 NA intron (NM_030906, intron 1 of 13) intron (NM_030906, intron 1 of 13) 50581 NM_001352397 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 272.833-11 chr9 30644474 30644841 + 1.16667 NA Intergenic Intergenic -236203 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 227.5-10 chr15 46141683 46141916 + 1.16667 NA Intergenic Intergenic 436604 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 291.834 chr17 19967476 19967832 + 1.16667 NA intron (NM_007202, intron 2 of 14) AluSq2|SINE|Alu 10174 NM_007202 11216 Hs.642676 NM_007202 ENSG00000108599 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A-kinase anchoring protein 10 protein-coding 204-37 chr8 64094465 64094757 + 1.16667 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 273947 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 281.334 chr12 21100580 21100842 + 1.16667 NA Intergenic L1MA6|LINE|L1 -30483 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 156.5-86 chr8 127392157 127392317 + 1.16667 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -8162 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 623.5 chr10 25712786 25713681 + 1.16667 NA intron (NR_108067, intron 3 of 4) intron (NR_108067, intron 3 of 4) 61521 NR_108067 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 267.667-5 chr10 59920794 59921187 + 1.16667 NA Intergenic MSTB|LTR|ERVL-MaLR -14434 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 248.167-3 chr1 113807978 113808345 + 1.16667 NA intron (NR_130896, intron 1 of 7) MER2|DNA|TcMar-Tigger 4315 NM_018364 54665 Hs.486285 NM_018364 ENSG00000081019 RSBN1 KDM9|ROSBIN round spermatid basic protein 1 protein-coding 364.333-3 chr6 140228317 140228709 + 1.16667 NA Intergenic Intergenic 23261 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 135.334-10 chr9 98771016 98771272 + 1.16667 NA intron (NM_173551, intron 9 of 14) intron (NM_173551, intron 9 of 14) 25411 NM_173551 203286 Hs.406890 NM_173551 ENSG00000165138 ANKS6 ANKRD14|NPHP16|PKDR1|SAMD6 ankyrin repeat and sterile alpha motif domain containing 6 protein-coding 182.334-2 chr11 97800277 97800629 + 1.16667 NA Intergenic Intergenic -1220496 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 203.167-27 chr3 122192900 122193266 + 1.16667 NA intron (NM_001178065, intron 1 of 6) intron (NM_001178065, intron 1 of 6) 8756 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 266.167-15 chr4 76403065 76403581 + 1.16667 NA intron (NM_001042784, intron 1 of 23) intron (NM_001042784, intron 1 of 23) 3982 NM_001042784 339965 Hs.529680 NM_178555 ENSG00000163749 CCDC158 - coiled-coil domain containing 158 protein-coding 215.334-4 chr8 78525739 78526000 + 1.16667 NA intron (NM_181839, intron 1 of 2) MIRb|SINE|MIR 9529 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 217.667-39 chr6 41896390 41896713 + 1.16667 NA Intergenic Intergenic -1176 NM_018561 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 198.667-10 chr10 83537838 83538159 + 1.16667 NA Intergenic Intergenic 139091 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 338-6 chr18 61901910 61902371 + 1.16667 NA Intergenic MIRb|SINE|MIR -9133 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 187.833-13 chr12 114647584 114647836 + 1.16667 NA Intergenic MIRb|SINE|MIR 36465 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 319.5-7 chr7 37912960 37913447 + 1.16667 NA intron (NM_003014, intron 3 of 5) intron (NM_003014, intron 3 of 5) 3614 NM_003014 6424 Hs.658169 NM_003014 ENSG00000106483 SFRP4 FRP-4|FRPHE|FRZB-2|PYL|sFRP-4 secreted frizzled related protein 4 protein-coding 268.167-6 chr18 72922893 72923229 + 1.16667 NA Intergenic MSTA|LTR|ERVL-MaLR 54021 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 430.667-2 chr10 33218828 33219468 + 1.16667 NA intron (NM_001244973, intron 8 of 16) intron (NM_001244973, intron 8 of 16) -102341 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 172-31 chr17 58140924 58141171 + 1.16667 NA Intergenic L1M7|LINE|L1 -14107 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 127-12 chr11 21077196 21077327 + 1.16667 NA intron (NM_201551, intron 12 of 18) L1M6|LINE|L1 407675 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 217.833-20 chr6 101629005 101629270 + 1.16667 NA intron (NM_001166247, intron 3 of 16) intron (NM_001166247, intron 3 of 16) 230152 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 248.834-7 chr22 49944355 49944634 + 1.16667 NA Intergenic Intergenic -16278 NM_001001852 415116 Hs.530381 NM_001001852 ENSG00000198355 PIM3 pim-3 Pim-3 proto-oncogene, serine/threonine kinase protein-coding 213.501-2 chr3 71377903 71378235 + 1.16667 NA intron (NR_146142, intron 3 of 19) intron (NR_146142, intron 3 of 19) -73298 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 245.334-2 chr17 72426451 72426701 + 1.16667 NA intron (NR_152516, intron 2 of 3) intron (NR_152516, intron 2 of 3) 83765 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 165-50 chr5 119180697 119181030 + 1.16667 NA intron (NM_001290321, intron 28 of 43) intron (NM_001290321, intron 28 of 43) 26226 NR_049892 100847085 NR_049892 ENSG00000264536 MIR5706 - microRNA 5706 ncRNA 228.5-41 chrX 38573901 38574261 + 1.16667 NA intron (NM_004615, intron 1 of 7) L1MC3|LINE|L1 12603 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 139.5-38 chr3 100897294 100897432 + 1.16667 NA intron (NM_001349332, intron 4 of 35) L1ME3|LINE|L1 96127 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 160.833-38 chr5 122373550 122373831 + 1.16667 NA intron (NM_001308107, intron 1 of 8) intron (NM_001308107, intron 1 of 8) -17399 NM_001308106 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 115.834-8 chr9 119376276 119376423 + 1.16667 NA Intergenic MLT1K|LTR|ERVL-MaLR -6914 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 143.5-80 chr7 53758727 53758957 + 1.16667 NA intron (NR_038371, intron 4 of 5) L4_B_Mam|LINE|RTE-X 53089 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 120.833-28 chr2 58964841 58965071 + 1.16667 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -252752 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 217.834-5 chr4 171451169 171451448 + 1.16667 NA Intergenic MIRb|SINE|MIR 187455 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 151.667-55 chr21 26942157 26942352 + 1.16667 NA intron (NM_007038, intron 3 of 7) intron (NM_007038, intron 3 of 7) -11707 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 317.167-6 chr15 45604986 45605425 + 1.16667 NA intron (NR_132357, intron 3 of 3) intron (NR_132357, intron 3 of 3) 17433 NR_132356 26258 Hs.7037 NM_012388 ENSG00000104164 BLOC1S6 BLOS6|HPS9|PA|PALLID|PLDN biogenesis of lysosomal organelles complex 1 subunit 6 protein-coding 113.167-8 chr10 47010427 47010747 + 1.16667 NA Intergenic L1PA16|LINE|L1 98865 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 218.667-33 chr6 79085777 79086047 + 1.16667 NA Intergenic L2a|LINE|L2 -7658 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 526.834 chr4 49154124 49155486 + 1.16667 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 168163 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 269.667-6 chr11 62568609 62569043 + 1.16667 NA intron (NM_001404, intron 5 of 9) AluSq10|SINE|Alu -1755 NR_106805 102465447 NR_106805 ENSG00000276102 MIR6747 hsa-mir-6747 microRNA 6747 ncRNA 132.167-45 chr22 17625657 17625786 + 1.16667 NA intron (NM_001696, intron 1 of 8) intron (NM_001696, intron 1 of 8) 3028 NM_001696 529 Hs.517338 NM_001696 ENSG00000131100 ATP6V1E1 ARCL2C|ATP6E|ATP6E2|ATP6V1E|P31|Vma4 ATPase H+ transporting V1 subunit E1 protein-coding 138.5-51 chr3 113647559 113647821 + 1.16667 NA TTS (NR_111981) TTS (NR_111981) 48952 NM_001009899 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 182-24 chr2 14922300 14922521 + 1.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR 289693 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 220.167-11 chr15 27779620 27779891 + 1.16667 NA intron (NM_001300984, intron 22 of 22) L1M4c|LINE|L1 319560 NM_000275 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 225.667-36 chr9 70891727 70892065 + 1.16667 NA intron (NM_001366143, intron 1 of 25) MIRb|SINE|MIR -22844 NM_024971 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 207.167-3 chr1 155680767 155681010 + 1.16667 NA intron (NM_001198901, intron 1 of 9) L2a|LINE|L2 -1059 NM_001198899 55249 Hs.584927 NM_018253 ENSG00000163374 YY1AP1 GRNG|HCCA1|HCCA2|YY1AP YY1 associated protein 1 protein-coding 164.334-7 chr5 106027643 106027849 + 1.16667 NA Intergenic LTR101_Mam|LTR|ERVL 928272 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 233.333-3 chr10 62337168 62337661 + 1.16667 NA Intergenic MLT1A|LTR|ERVL-MaLR -36743 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 169.5-41 chr22 31901722 31901913 + 1.16667 NA intron (NR_146296, intron 41 of 42) intron (NR_146296, intron 41 of 42) 36637 NM_001302819 25775 Hs.627602 NM_015372 ENSG00000128254 C22orf24 HSN44A4A chromosome 22 open reading frame 24 protein-coding 233.833-11 chr5 13714711 13715081 + 1.16667 NA intron (NM_001369, intron 74 of 78) intron (NM_001369, intron 74 of 78) 229584 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 224.834-4 chr4 33409055 33409344 + 1.16667 NA Intergenic Intergenic 630694 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 175.5-11 chr10 87759636 87759905 + 1.16667 NA non-coding (NR_135914, exon 9 of 11) non-coding (NR_135914, exon 9 of 11) 58461 NM_001321967 84896 Hs.435948 NM_032810 ENSG00000138138 ATAD1 AFDC1|FNP001|HKPX4|THORASE ATPase family AAA domain containing 1 protein-coding 180.5-35 chr22 48296304 48296504 + 1.16667 NA Intergenic L1MCa|LINE|L1 22040 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 508.167 chr5 45697638 45698162 + 1.16667 NA Intergenic Intergenic -1520 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 137.334-4 chr5 39549617 39549756 + 1.16667 NA Intergenic Intergenic 29255 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 240.5-5 chr15 87728008 87728289 + 1.16667 NA Intergenic Intergenic 151219 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 170.333-32 chr17 61833922 61834117 + 1.16667 NA intron (NM_032043, intron 6 of 19) MER58A|DNA|hAT-Charlie 29540 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 122.333-26 chr12 124013327 124013505 + 1.16667 NA 3' UTR (NM_152437, exon 5 of 5) 3' UTR (NM_152437, exon 5 of 5) 40201 NM_001204298 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 232.167-6 chr11 80149604 80149875 + 1.16667 NA Intergenic Intergenic 613064 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 240.333-27 chr8 54806789 54807118 + 1.16667 NA Intergenic Intergenic 190857 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 318.167-4 chr2 165682469 165682779 + 1.16667 NA 3' UTR (NM_001172173, exon 7 of 7) 3' UTR (NM_001172173, exon 7 of 7) 110288 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 186.334-2 chr17 17391380 17391633 + 1.16667 NA Intergenic MER97c|DNA|hAT-Tip100 -85494 NM_018019 55090 Hs.244595 NM_018019 ENSG00000141026 MED9 MED25 mediator complex subunit 9 protein-coding 305.833-5 chr3 171873639 171874173 + 1.16667 NA Intergenic Intergenic 26834 NR_046852 100874219 Hs.730556 NR_046852 ENSG00000234717 TMEM212-AS1 - TMEM212 antisense RNA 1 ncRNA 167.167-18 chr11 39379242 39379516 + 1.16667 NA Intergenic Zaphod|DNA|hAT-Tip100 730521 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 202.834 chr1 238177486 238177805 + 1.16667 NA Intergenic MER84-int|LTR|ERV1 -286723 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 239.167-19 chr8 14197520 14197997 + 1.16667 NA intron (NM_139167, intron 4 of 7) L1ME1|LINE|L1 568068 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 113.334-5 chr2 194280021 194280340 + 1.16667 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -64089 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 147.167-54 chr6 120127312 120127496 + 1.16667 NA Intergenic L1PREC2|LINE|L1 112225 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 147.333-76 chr6 143843989 143844178 + 1.16667 NA intron (NM_001329953, intron 1 of 10) intron (NM_001329953, intron 1 of 10) 745 NM_032860 84946 Hs.185675 NM_032860 ENSG00000135521 LTV1 C6orf93|dJ468K18.4 LTV1 ribosome biogenesis factor protein-coding 201-34 chr5 39839474 39839871 + 1.16667 NA Intergenic L1M7|LINE|L1 -212619 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 305.667-5 chr15 62485918 62486291 + 1.16667 NA Intergenic L1MC4|LINE|L1 143075 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 195.167-19 chr2 215342201 215342547 + 1.16667 NA intron (NM_004044, intron 12 of 15) L1MD1|LINE|L1 30315 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 430.667-3 chr2 207184755 207185418 + 1.16667 NA Intergenic Intergenic -17840 NM_001270943 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 266.5 chr10 117297555 117297876 + 1.16667 NA intron (NM_173791, intron 3 of 4) Tigger5b|DNA|TcMar-Tigger 56601 NM_003054 6571 Hs.596992 NM_003054 ENSG00000165646 SLC18A2 PKDYS2|SVAT|SVMT|VAT2|VMAT2 solute carrier family 18 member A2 protein-coding 151.333-35 chr17 70781858 70782266 + 1.16667 NA Intergenic Intergenic 420117 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 167.333-68 chr8 128341714 128341944 + 1.16667 NA Intergenic Intergenic 191713 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 138.167-54 chr3 115170225 115170431 + 1.16667 NA Intergenic Intergenic -23040 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 244.334-4 chr10 92932228 92932571 + 1.16667 NA intron (NM_001319200, intron 8 of 17) L1ME1|LINE|L1 83879 NM_019053 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 238.167-23 chr7 53762324 53762589 + 1.16667 NA intron (NR_038371, intron 4 of 5) intron (NR_038371, intron 4 of 5) 49475 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 170.334-6 chr3 81656557 81656767 + 1.16667 NA intron (NM_000158, intron 3 of 15) intron (NM_000158, intron 3 of 15) 104983 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 206-12 chr15 70406348 70406706 + 1.16667 NA Intergenic Intergenic 99401 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 274-9 chr6 48348453 48348875 + 1.16667 NA Intergenic MIRc|SINE|MIR -279975 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 177.167-6 chr12 47199281 47199644 + 1.16667 NA intron (NM_001281429, intron 2 of 2) L1MC|LINE|L1 11650 NR_039847 100616486 NR_039847 ENSG00000263838 MIR4698 - microRNA 4698 ncRNA 385.834-2 chr4 72019838 72020228 + 1.16667 NA Intergenic Intergenic -11771 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 229.334-2 chr8 91690311 91690561 + 1.16667 NA Intergenic L1MA9|LINE|L1 327244 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 178.5-33 chr16 74235843 74236138 + 1.16667 NA Intergenic L1MEi|LINE|L1 -20469 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 164.333-74 chr6 155727537 155727774 + 1.16667 NA Intergenic L1MEc|LINE|L1 212811 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 215.167-9 chr12 90853710 90853972 + 1.16667 NA Intergenic Intergenic -64182 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 192.5-4 chr10 55490350 55490694 + 1.16667 NA intron (NM_001354404, intron 2 of 34) L1MEc|LINE|L1 -108520 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 261.333-3 chr14 31388054 31388345 + 1.16667 NA intron (NM_015473, intron 7 of 35) intron (NM_015473, intron 7 of 35) 32351 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 300.501 chr8 118264912 118265256 + 1.16667 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -153265 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 284.5-7 chr19 42525769 42526136 + 1.16667 NA intron (NM_001184813, intron 2 of 7) intron (NM_001184813, intron 2 of 7) 2529 NM_001184815 634 Hs.512682 NM_001712 ENSG00000079385 CEACAM1 BGP|BGP1|BGPI carcinoembryonic antigen related cell adhesion molecule 1 protein-coding 226.833-14 chr21 25899313 25899891 + 1.16667 NA intron (NM_001204301, intron 14 of 16) MLT1F|LTR|ERVL-MaLR -163948 NM_001003697 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 305.834-2 chr14 59805952 59806762 + 1.16667 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 64419 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 295.5 chr10 31726864 31727253 + 1.16667 NA Intergenic Intergenic 181868 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 154.333-21 chr14 31458190 31458440 + 1.16667 NA promoter-TSS (NM_080664) promoter-TSS (NM_080664) -809 NM_080664 112487 Hs.116014 NM_080664 ENSG00000129480 DTD2 ATD|C14orf126 D-aminoacyl-tRNA deacylase 2 protein-coding 323.334 chr1 35458671 35459225 + 1.16667 NA intron (NM_024874, intron 9 of 20) intron (NM_024874, intron 9 of 20) -92871 NR_046659 100861513 Hs.585397 NR_046659 ENSG00000227409 ZMYM4-AS1 - ZMYM4 antisense RNA 1 ncRNA 349.001 chr6 39309835 39310474 + 1.16667 NA intron (NM_001135111, intron 2 of 5) intron (NM_001135111, intron 2 of 5) 4265 NM_001135111 89822 Hs.162282 NM_031460 ENSG00000124780 KCNK17 K2p17.1|TALK-2|TALK2|TASK-4|TASK4 potassium two pore domain channel subfamily K member 17 protein-coding 209.834-2 chr11 76936053 76936271 + 1.16667 NA intron (NM_001300955, intron 2 of 9) THE1B|LTR|ERVL-MaLR 75244 NM_018367 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 134.5-19 chr11 30360636 30360791 + 1.16667 NA Intergenic Intergenic 37609 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 243.167-7 chr2 12698051 12698346 + 1.16667 NA Intergenic Intergenic -18674 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 222.334 chr16 84658067 84658348 + 1.16667 NA intron (NM_024731, intron 3 of 4) MER3|DNA|hAT-Charlie 9696 NM_001303451 79786 Hs.222731 NM_024731 ENSG00000135686 KLHL36 C16orf44 kelch like family member 36 protein-coding 141.167-59 chr5 93613347 93613563 + 1.16667 NA Intergenic Intergenic 7333 NR_031754 100313887 NR_031754 ENSG00000284336 MIR2277 mir-2277 microRNA 2277 ncRNA 196.667-49 chr6 145830303 145830523 + 1.16667 NA intron (NR_038246, intron 2 of 2) L1MC5|LINE|L1 15537 NR_038244 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 386.001 chr16 87141157 87141583 + 1.16667 NA Intergenic Charlie4a|DNA|hAT-Charlie -70745 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 207.333-8 chr10 105186091 105186443 + 1.16667 NA intron (NM_014978, intron 14 of 26) intron (NM_014978, intron 14 of 26) -520051 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 257-3 chr10 27584533 27584861 + 1.16667 NA Intergenic Intergenic 80393 NR_046172 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 393-3 chr2 32581298 32581862 + 1.16667 NA intron (NM_016252, intron 66 of 73) MER113|DNA|hAT-Charlie -6762 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 205.167-9 chr12 786560 786781 + 1.16667 NA intron (NM_001184985, intron 1 of 27) AluSq|SINE|Alu 33747 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 204.667-5 chr1 231895671 231895910 + 1.16667 NA intron (NM_001164541, intron 9 of 9) L2|LINE|L2 -30044 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 150.834-6 chr8 77430982 77431150 + 1.16667 NA Intergenic Intergenic -19631 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 224.167-13 chr2 49404834 49405116 + 1.16667 NA Intergenic Intergenic -250448 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 218.833-27 chr7 30487864 30488219 + 1.16667 NA Intergenic L1MD1|LINE|L1 -9175 NR_149002 10392 Hs.405153 NM_006092 ENSG00000106100 NOD1 CARD4|CLR7.1|NLRC1 nucleotide binding oligomerization domain containing 1 protein-coding 199-42 chr9 30207085 30207340 + 1.16667 NA Intergenic Tigger3a|DNA|TcMar-Tigger 201242 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 200.5-40 chr7 6241348 6241618 + 1.16667 NA intron (NM_001367581, intron 1 of 13) L1MC5a|LINE|L1 31141 NM_001367581 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 364.334-2 chr6 133187323 133187696 + 1.16667 NA Intergenic Intergenic -53848 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 238.5-5 chr10 48813379 48813690 + 1.16667 NA intron (NM_020945, intron 30 of 61) MIRb|SINE|MIR 100701 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 250.5-8 chr2 23764338 23764647 + 1.16667 NA intron (NR_125717, intron 24 of 28) intron (NR_125717, intron 24 of 28) 162631 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 177.333-34 chr2 47478856 47479179 + 1.16667 NA intron (NM_000251, intron 14 of 15) AluSx1|SINE|Alu -48520 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 408.834-2 chr2 49398143 49398657 + 1.16667 NA Intergenic Intergenic -243873 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 241.667-10 chr12 131078677 131078910 + 1.16667 NA intron (NM_198827, intron 14 of 24) L1ME3Cz|LINE|L1 -84817 NR_131951 105755954 Hs.677534 NR_131950 ADGRD1-AS1 LACAT8 ADGRD1 antisense RNA 1 ncRNA 236-12 chr2 133304549 133304822 + 1.16667 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 38490 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 213.5 chr10 17510559 17510845 + 1.16667 NA Intergenic AluJo|SINE|Alu -56107 NR_144322 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 159.167-35 chr21 20147853 20148184 + 1.16667 NA Intergenic Intergenic 110667 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 200.167-10 chr11 12685682 12685867 + 1.16667 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 11353 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 117.667-94 chr4 165420341 165420487 + 1.16667 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) 34172 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 211.167-23 chr3 184992410 184992703 + 1.16667 NA intron (NM_001009921, intron 41 of 46) MIR|SINE|MIR 160504 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 220.334-7 chr5 114694072 114694427 + 1.16667 NA intron (NR_130785, intron 1 of 12) L1M5|LINE|L1 79164 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 226.667-12 chr16 77583710 77583987 + 1.16667 NA Intergenic X7A_LINE|LINE|CR1 -138644 NM_001243661 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 174.167-16 chr18 36133197 36133421 + 1.16667 NA exon (NM_001324467, exon 2 of 21) exon (NM_001324467, exon 2 of 21) 3410 NM_001324465 55250 Hs.8739 NM_018255 ENSG00000134759 ELP2 MRT58|SHINC-2|STATIP1|StIP elongator acetyltransferase complex subunit 2 protein-coding 114.833-74 chr8 137725108 137725278 + 1.16667 NA Intergenic L1MB7|LINE|L1 -311605 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 191.334-8 chr4 96624454 96624822 + 1.16667 NA intron (NR_147149, intron 3 of 3) (ATATAA)n|Simple_repeat|Simple_repeat 313935 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 169.167-28 chr21 27655407 27655734 + 1.16667 NA Intergenic AluSx3|SINE|Alu -66809 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 164.5-46 chr5 110850304 110850548 + 1.16667 NA Intergenic L1MA2|LINE|L1 111419 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 249-12 chr2 122280935 122281334 + 1.16667 NA Intergenic AluSg|SINE|Alu 525483 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 354.334-3 chr9 28346201 28346789 + 1.16667 NA intron (NM_001354574, intron 4 of 5) L1PREC2|LINE|L1 372810 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 245.167-8 chr3 153812686 153813017 + 1.16667 NA Intergenic L1ME2|LINE|L1 -50325 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 208.167-23 chr5 67149108 67149472 + 1.16667 NA intron (NM_001290227, intron 21 of 25) intron (NM_001290227, intron 21 of 25) 47509 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 134.667-112 chr8 134772368 134772520 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 28163 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 219.167-4 chr1 221142774 221143138 + 1.16667 NA Intergenic L1MEh|LINE|L1 193340 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 245.834-6 chr2 154294340 154294580 + 1.16667 NA intron (NM_052917, intron 8 of 12) intron (NM_052917, intron 8 of 12) 162978 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 122-44 chr21 27135881 27136057 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -168881 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 239.667-25 chr4 96845949 96846528 + 1.16667 NA Intergenic Intergenic -520688 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 174.834-4 chr3 69133836 69133998 + 1.16667 NA Intergenic Intergenic -11322 NM_001304418 56203 Hs.350621 NM_198271 ENSG00000163380 LMOD3 NEM10 leiomodin 3 protein-coding 190.5-52 chr8 119872422 119872707 + 1.16667 NA Intergenic Intergenic -1091 NM_001283012 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 148-81 chr8 84386415 84386766 + 1.16667 NA intron (NM_001354319, intron 2 of 8) MIRb|SINE|MIR -28894 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 262.167-5 chr13 55190618 55191036 + 1.16667 NA Intergenic Intergenic 16373 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 177-64 chr7 33050372 33050611 + 1.16667 NA intron (NM_001002009, intron 1 of 9) intron (NM_001002009, intron 1 of 9) -9326 NM_001166118 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 267.834-5 chr6 119038989 119039331 + 1.16667 NA intron (NM_001288576, intron 1 of 15) L1MC2|LINE|L1 29983 NR_030315 693128 NR_030315 ENSG00000207982 MIR548B MIRN548B microRNA 548b ncRNA 187.333-81 chr9 13277512 13277874 + 1.16667 NA intron (NM_001330637, intron 1 of 46) AluSz|SINE|Alu 1871 NM_001261407 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 297.501 chr11 42720541 42721182 + 1.16667 NA Intergenic L2c|LINE|L2 -467171 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 270.834-3 chr5 143601035 143601522 + 1.16667 NA Intergenic Intergenic -78582 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 235.334-5 chr8 127022399 127022849 + 1.16667 NA Intergenic L1M5|LINE|L1 9470 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 341.834 chr8 123125587 123126052 + 1.16667 NA intron (NM_001363149, intron 11 of 21) intron (NM_001363149, intron 11 of 21) 52570 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 129.834-10 chr8 84234148 84234339 + 1.16667 NA intron (NM_001354323, intron 1 of 7) intron (NM_001354323, intron 1 of 7) 49577 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 185.833-13 chr14 68837327 68837622 + 1.16667 NA Intergenic MSTB-int|LTR|ERVL-MaLR -41231 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 249.5-7 chr12 95619630 95620030 + 1.16667 NA Intergenic Kanga1|DNA|TcMar-Tc2 -29425 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 122.833-24 chr14 59018173 59018371 + 1.16667 NA TTS (NR_110547) TTS (NR_110547) -170395 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 307.5-12 chr8 114650811 114651204 + 1.16667 NA Intergenic MER3|DNA|hAT-Charlie 1017006 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 139.334-2 chr1 248685823 248685952 + 1.16667 NA Intergenic Intergenic -3583 NM_001004734 401994 Hs.449973 NM_001004734 ENSG00000189181 OR14I1 OR5BU1|OR5BU1P olfactory receptor family 14 subfamily I member 1 protein-coding 274.833-3 chr1 224465846 224466313 + 1.16667 NA intron (NM_001322302, intron 2 of 6) L1MD2|LINE|L1 31230 NR_136294 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 177.667-12 chr11 110907937 110908156 + 1.16667 NA Intergenic Intergenic 189272 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 350.833-4 chr7 10408687 10409285 + 1.16667 NA Intergenic Intergenic -293690 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 198.167-30 chr5 36949322 36949534 + 1.16667 NA intron (NM_015384, intron 1 of 45) MIR|SINE|MIR 72659 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 258.834-3 chr8 77640117 77640681 + 1.16667 NA Intergenic (TGTTT)n|Simple_repeat|Simple_repeat 189702 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 241.667-17 chr2 138073649 138073994 + 1.16667 NA Intergenic Intergenic -28063 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 233.167-22 chr20 40163053 40163453 + 1.16667 NA Intergenic MIRb|SINE|MIR 158792 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 393.834 chr14 53045375 53046018 + 1.16667 NA 3' UTR (NM_001160147, exon 13 of 13) 3' UTR (NM_001160147, exon 13 of 13) -94599 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 186.834-4 chr4 52743031 52743219 + 1.16667 NA TTS (NM_024534) TTS (NM_024534) 8300 NM_001242690 100288413 Hs.363087 NM_024534 ENSG00000226887 ERVMER34-1 HEMO|envMER34 endogenous retrovirus group MER34 member 1, envelope protein-coding 143.5-92 chr9 85597873 85598049 + 1.16667 NA intron (NM_015239, intron 17 of 25) L1MC|LINE|L1 144068 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 261-15 chr2 210566235 210566803 + 1.16667 NA intron (NR_161225, intron 2 of 38) Tigger19b|DNA|TcMar-Tigger 9920 NM_001875 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 216.834-6 chr6 64486958 64487250 + 1.16667 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 680268 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 120.834 chr1 83543501 83543647 + 1.16667 NA Intergenic Intergenic 97520 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 259.667-23 chr5 18834052 18834772 + 1.16667 NA Intergenic L1MA5A|LINE|L1 1027138 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 164.167-66 chr9 80546722 80546887 + 1.16667 NA Intergenic Intergenic 571781 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 157-21 chr13 90231689 90231898 + 1.16667 NA TTS (NR_030754) TTS (NR_030754) 611 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 257.333-13 chr3 106740028 106740483 + 1.16667 NA Intergenic Intergenic 500383 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 178.5-5 chr1 221382209 221382449 + 1.16667 NA Intergenic Intergenic -46033 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 180.833-32 chr4 36217877 36218079 + 1.16667 NA intron (NR_146894, intron 2 of 32) L1ME1|LINE|L1 25961 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 138.5-50 chr22 45739072 45739224 + 1.16667 NA intron (NM_013236, intron 8 of 11) intron (NM_013236, intron 8 of 11) -21376 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 215.5-38 chr7 74721636 74721837 + 1.16667 NA intron (NM_033000, intron 11 of 33) intron (NM_033000, intron 11 of 33) 7182 NR_110044 101926943 Hs.654772 NR_110044 ENSG00000232729 LOC101926943 - uncharacterized LOC101926943 ncRNA 143.833-22 chr20 612151 612378 + 1.16667 NA Intergenic Intergenic -1998 NM_004609 6939 Hs.437 NM_004609 ENSG00000125878 TCF15 EC2|PARAXIS|bHLHa40 transcription factor 15 protein-coding 271.667-12 chr4 67903504 67903868 + 1.16667 NA Intergenic L1M1|LINE|L1 -19684 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 259.833-11 chr6 45376366 45376700 + 1.16667 NA intron (NM_181356, intron 1 of 12) MER3|DNA|hAT-Charlie 985 NR_146635 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 233.834-8 chr2 4611851 4612062 + 1.16667 NA Intergenic Charlie1a|DNA|hAT-Charlie 44266 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 131.334-4 chr22 34692180 34692319 + 1.16667 NA Intergenic L1MA9|LINE|L1 305667 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 161.667-46 chr2 183938952 183939171 + 1.16667 NA Intergenic L1MA4A|LINE|L1 -439914 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 298-9 chr5 29619035 29619412 + 1.16667 NA Intergenic L1M4c|LINE|L1 -223247 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 321.833-6 chr21 28671463 28672114 + 1.16667 NA Intergenic Intergenic 132470 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 211.667-46 chr9 35375274 35375571 + 1.16667 NA intron (NM_006377, intron 13 of 38) intron (NM_006377, intron 13 of 38) -31333 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 136.5-96 chr9 12011568 12011924 + 1.16667 NA Intergenic L1MB1|LINE|L1 -681639 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 174.667-25 chr16 20688428 20688623 + 1.16667 NA intron (NM_001318890, intron 2 of 13) L1M4c|LINE|L1 2731 NR_134918 116285 Hs.306812 NM_052956 ENSG00000166743 ACSM1 BUCS1|MACS1 acyl-CoA synthetase medium chain family member 1 protein-coding 115.333-28 chr14 47810955 47811152 + 1.16667 NA Intergenic L1MA3|LINE|L1 -16039 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 311.834 chr4 68064001 68064421 + 1.16667 NA promoter-TSS (NR_027094) promoter-TSS (NR_027094) -914 NR_027094 401135 Hs.130270 NM_001014372 SYT14P1 CHR415SYT|SYT14L|SYTDEP synaptotagmin 14 pseudogene 1 pseudo 264.667-26 chrX 77167031 77167378 + 1.16667 NA Intergenic L1PB3|LINE|L1 -152672 NR_110406 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 139.667-7 chr1 165766151 165766328 + 1.16667 NA intron (NM_001256164, intron 2 of 6) L2a|LINE|L2 2629 NM_001366129 54499 Hs.31498 NM_019026 ENSG00000143183 TMCO1 HP10122|PCIA3|PNAS-136|TMCC4 transmembrane and coiled-coil domains 1 protein-coding 145-85 chr7 104719165 104719343 + 1.16667 NA intron (NM_199000, intron 1 of 2) (AT)n|Simple_repeat|Simple_repeat 84838 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 215.667-48 chr7 96622260 96622617 + 1.16667 NA non-coding (NR_038948, exon 5 of 5) non-coding (NR_038948, exon 5 of 5) 41900 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 233.667-8 chr13 81440352 81440752 + 1.16667 NA Intergenic L1MA2|LINE|L1 -213569 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 188.001 chr1 108939096 108939275 + 1.16667 NA intron (NM_001048210, intron 9 of 11) (AT)n|Simple_repeat|Simple_repeat 11263 NM_001278203 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 232.501 chr2 137820823 137821269 + 1.16667 NA Intergenic THE1C|LTR|ERVL-MaLR 106886 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 159-39 chr2 22634866 22635177 + 1.16667 NA Intergenic Intergenic 98542 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 221-20 chr2 196263791 196264155 + 1.16667 NA non-coding (NR_110225, exon 3 of 3) non-coding (NR_110225, exon 3 of 3) 3949 NR_110225 101927482 Hs.191841 NR_110225 HECW2-AS1 - HECW2 antisense RNA 1 ncRNA 226.667-9 chr12 24088770 24089169 + 1.16667 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -123452 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 255-10 chr2 52971317 52971694 + 1.16667 NA Intergenic Intergenic -268890 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 286.167-6 chr18 66350435 66350771 + 1.16667 NA Intergenic Intergenic 253487 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 254.834-5 chr3 94026383 94026885 + 1.16667 NA intron (NM_001001850, intron 1 of 1) intron (NM_001001850, intron 1 of 1) 1963 NM_001001850 415117 Hs.679768 NM_001001850 ENSG00000178750 STX19 - syntaxin 19 protein-coding 337.333-3 chr10 64547307 64548041 + 1.16667 NA Intergenic Intergenic -277854 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 244.167-17 chr6 82170659 82170976 + 1.16667 NA 3' UTR (NM_001300906, exon 29 of 29).2 3' UTR (NM_001300906, exon 29 of 29).2 -69052 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 133-21 chr12 21996134 21996291 + 1.16667 NA Intergenic LTR16A|LTR|ERVL -49962 NR_135117 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 286.167-13 chr7 50118576 50118871 + 1.16667 NA intron (NM_001161834, intron 2 of 8) MER57A-int|LTR|ERV1 22637 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 347.167 chr11 47883818 47884219 + 1.16667 NA Intergenic L1MB5|LINE|L1 -35474 NM_001318399 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 125.5-13 chr12 5423617 5423791 + 1.16667 NA Intergenic Intergenic -8404 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 186.834-7 chr5 25210931 25211170 + 1.16667 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 20097 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 134.334-4 chr4 105476337 105476474 + 1.16667 NA Intergenic Intergenic -2335 NM_176866 27068 Hs.654957 NM_006903 ENSG00000138777 PPA2 HSPC124|SCFAI|SCFI|SID6-306 pyrophosphatase (inorganic) 2 protein-coding 307-5 chr5 115141924 115142416 + 1.16667 NA intron (NM_001300752, intron 3 of 8) intron (NM_001300752, intron 3 of 8) 27738 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 240.834-5 chr4 55645628 55646077 + 1.16667 NA Intergenic Intergenic -9059 NR_120489 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 215.5-39 chr7 107987147 107987478 + 1.16667 NA intron (NM_002291, intron 5 of 33) L1MB4|LINE|L1 15849 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 225-4 chr10 31365593 31366142 + 1.16667 NA intron (NM_001368169, intron 1 of 1) intron (NM_001368169, intron 1 of 1) 33888 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 260.834-7 chr8 71419376 71419762 + 1.16667 NA intron (NM_001370336, intron 2 of 17) intron (NM_001370336, intron 2 of 17) -57500 NM_000503 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 226.501 chr20 54627946 54628158 + 1.16667 NA intron (NM_018431, intron 6 of 7) intron (NM_018431, intron 6 of 7) 152459 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 115.5-7 chr1 173096376 173096489 + 1.16667 NA Intergenic Intergenic -45469 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 305.001 chr21 14402204 14402513 + 1.16667 NA Intergenic Intergenic -19212 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 155.834-5 chr5 7081768 7081995 + 1.16667 NA Intergenic L1M5|LINE|L1 187473 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 312.167 chr10 52885967 52886458 + 1.16667 NA Intergenic Intergenic -114512 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 337-7 chr6 70162450 70162987 + 1.16667 NA intron (NM_001858, intron 35 of 50) intron (NM_001858, intron 35 of 50) 120479 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 235.167-20 chr4 87190988 87191226 + 1.16667 NA intron (NM_020803, intron 2 of 9) intron (NM_020803, intron 2 of 9) 29161 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 190.5-13 chr12 85881317 85881631 + 1.16667 NA intron (NM_006183, intron 3 of 3) intron (NM_006183, intron 3 of 3) 7179 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 171.334-5 chr2 69025709 69025899 + 1.16667 NA intron (NM_032208, intron 1 of 17) MER94|DNA|hAT-Blackjack 12660 NM_053034 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 121-21 chr12 60767451 60767633 + 1.16667 NA Intergenic Intergenic 1078172 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 173.167-7 chr11 74471622 74471817 + 1.16667 NA Intergenic L2c|LINE|L2 -4164 NM_005472 10008 Hs.523899 NM_005472 ENSG00000175538 KCNE3 BRGDA6|HOKPP|HYPP|MiRP2 potassium voltage-gated channel subfamily E regulatory subunit 3 protein-coding 188.5-53 chr8 107165170 107165704 + 1.16667 NA Intergenic L1MC5a|LINE|L1 171078 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 188.334-9 chr4 52147058 52147294 + 1.16667 NA Intergenic Tigger3b|DNA|TcMar-Tigger 95872 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 149.333-9 chr10 19262729 19263002 + 1.16667 NA intron (NM_001142308, intron 19 of 39) L1MA9|LINE|L1 214064 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 354.834 chr10 52956213 52956644 + 1.16667 NA Intergenic MER77|LTR|ERVL -184728 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 230.834 chr1 64789439 64789688 + 1.16667 NA intron (NM_001366165, intron 5 of 11) intron (NM_001366165, intron 5 of 11) 44488 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 216-26 chr5 46087800 46088098 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr -391569 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 158.667-61 chr3 127271674 127271824 + 1.16667 NA Intergenic L1MEd|LINE|L1 16297 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 204.333-49 chr6 132272521 132272842 + 1.16667 NA Intergenic Intergenic 128794 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 222.334-5 chr4 150444547 150444808 + 1.16667 NA intron (NM_001367550, intron 44 of 56) intron (NM_001367550, intron 44 of 56) -134412 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 313.667-3 chr1 160153841 160154191 + 1.16667 NA intron (NM_144699, intron 2 of 21) intron (NM_144699, intron 2 of 21) 2454 NM_144699 480 Hs.662219 NM_144699 ENSG00000132681 ATP1A4 ATP1A1|ATP1AL2 ATPase Na+/K+ transporting subunit alpha 4 protein-coding 140.334-3 chr14 55246034 55246339 + 1.16667 NA Intergenic Intergenic -25235 NM_017943 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 157.334 chr10 20635370 20635549 + 1.16667 NA Intergenic Intergenic 83489 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 180.167-24 chr18 10734000 10734236 + 1.16667 NA intron (NM_022068, intron 32 of 51) intron (NM_022068, intron 32 of 51) 25531 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 178.167-17 chr17 58664790 58665008 + 1.16667 NA intron (NM_031272, intron 1 of 31) L2b|LINE|L2 27156 NM_198393 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 116.5-8 chr10 54532308 54532478 + 1.16667 NA intron (NM_001142771, intron 2 of 34) intron (NM_001142771, intron 2 of 34) 46163 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 221.5-4 chr10 73809638 73809948 + 1.16667 NA TTS (NR_160745) TTS (NR_160745) 1805 NM_003635 8509 Hs.654758 NM_003635 ENSG00000166507 NDST2 HSST2|N-HSST 2|NST2 N-deacetylase and N-sulfotransferase 2 protein-coding 165.834-5 chr3 131777440 131777600 + 1.16667 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) 208411 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 287.667 chr10 19373707 19374141 + 1.16667 NA intron (NM_001142308, intron 26 of 39) intron (NM_001142308, intron 26 of 39) 325123 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 115.667-24 chr12 42162053 42162410 + 1.16667 NA intron (NM_001190977, intron 1 of 2) intron (NM_001190977, intron 1 of 2) -17357 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 225.5 chr1 147092935 147093309 + 1.16667 NA Intergenic Intergenic -8366 NR_121645 101447996 NR_121645 ENSG00000286172 RNVU1-8 RNU1-145|vU1.8 RNA, variant U1 small nuclear 8 snRNA 302.167-13 chr9 27331991 27332307 + 1.16667 NA intron (NM_024761, intron 3 of 3) AluJb|SINE|Alu -34999 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 248.167 chr1 58933225 58933547 + 1.16667 NA Intergenic MIRb|SINE|MIR -87090 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 282.667-20 chrX 43338494 43338964 + 1.16667 NA Intergenic MER57A-int|LTR|ERV1 161735 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 245.334-4 chr2 34650395 34650756 + 1.16667 NA Intergenic Intergenic -26982 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 179-41 chr4 150108292 150108500 + 1.16667 NA intron (NM_001040260, intron 2 of 15) AluY|SINE|Alu 29951 NM_001040261 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 227-22 chr6 14341073 14341335 + 1.16667 NA Intergenic Intergenic -55750 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 233.667-29 chr8 136839672 136840060 + 1.16667 NA intron (NR_147196, intron 4 of 5) LTR33B|LTR|ERVL 309068 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 142.667-22 chr12 33641727 33642004 + 1.16667 NA Intergenic Intergenic -202046 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 263.667-17 chr6 123822946 123823297 + 1.16667 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 19256 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 138.834-2 chr1 244072493 244072633 + 1.16667 NA Intergenic Intergenic 19358 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 216.834-4 chr2 65245575 65245787 + 1.16667 NA intron (NM_001005386, intron 3 of 9) intron (NM_001005386, intron 3 of 9) 17986 NM_001005386 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 163.834-4 chr13 89528674 89528912 + 1.16667 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat -28284 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 184.167-30 chr2 185306693 185306955 + 1.16667 NA Intergenic Intergenic -139752 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 174.833-17 chr18 12881990 12882267 + 1.16667 NA intron (NM_080423, intron 1 of 8) intron (NM_080423, intron 1 of 8) 2109 NM_002828 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 275.334-3 chr16 12200245 12200666 + 1.16667 NA intron (NM_032167, intron 14 of 20) intron (NM_032167, intron 14 of 20) 223721 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 128.833-45 chr2 67561152 67561330 + 1.16667 NA Intergenic Intergenic 163908 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 204.167-29 chr6 67983259 67983545 + 1.16667 NA Intergenic Intergenic -71949 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 174.834-2 chr19 33701349 33701599 + 1.16667 NA intron (NM_001127895, intron 3 of 4) intron (NM_001127895, intron 3 of 4) 16946 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 249.334-4 chr11 115917912 115918318 + 1.16667 NA Intergenic LTR78|LTR|ERV1 -157915 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 152.667-32 chr14 84728576 84728787 + 1.16667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -543251 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 180.667-81 chr9 106773828 106774353 + 1.16667 NA Intergenic Intergenic -89076 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 221.667-5 chr1 194099465 194099911 + 1.16667 NA Intergenic L1PB4|LINE|L1 794943 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 200.333-27 chr3 60831106 60831655 + 1.16667 NA intron (NM_001320900, intron 4 of 9) intron (NM_001320900, intron 4 of 9) -213510 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 185.834 chr1 182235770 182236034 + 1.16667 NA intron (NR_104175, intron 2 of 2) intron (NR_104175, intron 2 of 2) 78159 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 133.5-65 chr6 79137072 79137259 + 1.16667 NA Intergenic L1PA13|LINE|L1 -58911 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 248.833-9 chr4 32276176 32276560 + 1.16667 NA Intergenic LTR1E|LTR|ERV1 -74670 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 282-21 chr5 143922863 143923307 + 1.16667 NA Intergenic MamTip2|DNA|hAT-Tip100 110924 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 250-9 chr14 39723273 39723688 + 1.16667 NA Intergenic Intergenic -290980 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 234.834-11 chr8 60619622 60620057 + 1.16667 NA intron (NM_002865, intron 7 of 7) intron (NM_002865, intron 7 of 7) -58901 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 197-23 chr2 76257136 76257319 + 1.16667 NA Intergenic L1M5|LINE|L1 -546312 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 219.834-5 chr17 51239534 51239762 + 1.16667 NA intron (NM_017643, intron 2 of 16) MER20|DNA|hAT-Charlie 20401 NM_017643 54799 Hs.656803 NM_017643 ENSG00000011258 MBTD1 SA49P01 mbt domain containing 1 protein-coding 266.667-18 chr5 116172889 116173260 + 1.16667 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) -82669 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 289-7 chr20 56242249 56242637 + 1.16667 NA Intergenic L1MB7|LINE|L1 -6289 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 130.333-74 chr5 54701258 54701474 + 1.16667 NA intron (NR_104658, intron 1 of 2) intron (NR_104658, intron 1 of 2) 1958 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 245.5-27 chr8 33327796 33328099 + 1.16667 NA Intergenic Intergenic 145199 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 172.334 chr10 16776041 16776233 + 1.16667 NA intron (NM_152724, intron 2 of 7) intron (NM_152724, intron 2 of 7) 41287 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 263.834 chr1 160620982 160621269 + 1.16667 NA intron (NM_003037, intron 4 of 6) intron (NM_003037, intron 4 of 6) 25919 NR_104401 6504 Hs.523660 NM_003037 ENSG00000117090 SLAMF1 CD150|CDw150|SLAM signaling lymphocytic activation molecule family member 1 protein-coding 131-74 chr8 79681031 79681348 + 1.16667 NA Intergenic L1M6|LINE|L1 70072 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 286-5 chr12 85677463 85678010 + 1.16667 NA Intergenic Intergenic 158673 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 182.167-28 chr21 24709150 24709493 + 1.16667 NA Intergenic Intergenic -131229 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 249.667-21 chr2 123296788 123297149 + 1.16667 NA Intergenic HAL1|LINE|L1 -223487 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 177.333-42 chr3 63199818 63200080 + 1.16667 NA Intergenic MIRb|SINE|MIR -78359 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 222.334-6 chr4 150672415 150673074 + 1.16667 NA intron (NM_001367550, intron 37 of 56) intron (NM_001367550, intron 37 of 56) 90593 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 276.333-23 chr8 112930388 112930889 + 1.16667 NA intron (NM_001363185, intron 7 of 66) MIRc|SINE|MIR 287145 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 236-7 chr15 95326079 95326458 + 1.16667 NA intron (NR_034095, intron 1 of 3) intron (NR_034095, intron 1 of 3) 832 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 213.833-7 chr11 79364827 79365123 + 1.16667 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 37134 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 182.167-11 chr12 24041085 24041283 + 1.16667 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -90152 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 254-6 chr15 70910877 70911248 + 1.16667 NA intron (NM_017691, intron 5 of 15) L2a|LINE|L2 18619 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 199.834-6 chr5 37104842 37105186 + 1.16667 NA Intergenic L1MA4|LINE|L1 -144032 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 120.333-40 chr13 107990927 107991081 + 1.16667 NA Intergenic L1ME4b|LINE|L1 -123508 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 263.667-13 chr5 31550232 31550660 + 1.16667 NA intron (NR_134298, intron 7 of 8) intron (NR_134298, intron 7 of 8) 18145 NM_018356 55322 Hs.519246 NM_018356 ENSG00000082213 C5orf22 - chromosome 5 open reading frame 22 protein-coding 151.167-17 chr14 73205833 73206077 + 1.16667 NA intron (NM_000021, intron 8 of 11) intron (NM_000021, intron 8 of 11) -31551 NM_173462 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 132.167-2 chr1 43732711 43732934 + 1.16667 NA intron (NM_001270459, intron 1 of 11) L1ME3G|LINE|L1 -5479 NR_125986 101929592 NR_125986 ENSG00000229444 LOC101929592 - uncharacterized LOC101929592 ncRNA 185.333-5 chr10 4089270 4089594 + 1.16667 NA TTS (NR_120632) TTS (NR_120632) 37706 NR_120632 101927964 Hs.737041 NR_120632 ENSG00000236990 LOC101927964 - uncharacterized LOC101927964 ncRNA 161.5-19 chr18 67878505 67878712 + 1.16667 NA intron (NR_033921, intron 4 of 4) intron (NR_033921, intron 4 of 4) -63786 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 280.834-2 chr2 17515366 17515775 + 1.16667 NA exon (NM_001321233, exon 5 of 7) exon (NM_001321233, exon 5 of 7) 2870 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 211.333-3 chr1 59308535 59308867 + 1.16667 NA intron (NM_018291, intron 1 of 15) MER5A|DNA|hAT-Charlie -1331 NM_001244714 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 147.5-11 chr1 226056402 226056576 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger -6227 NM_002107 3020 Hs.533624 NM_002107 ENSG00000163041 H3F3A H3.3A|H3F3 H3 histone family member 3A protein-coding 299.334-2 chr8 122604559 122604924 + 1.16667 NA Intergenic Intergenic -36097 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 192.333-17 chr18 8110128 8110417 + 1.16667 NA intron (NM_002845, intron 11 of 30) intron (NM_002845, intron 11 of 30) 256762 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 212.667-15 chr12 63064157 63064496 + 1.16667 NA Intergenic Intergenic 88484 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 144.5-10 chr10 65088412 65088714 + 1.16667 NA Intergenic Intergenic -164045 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 263.667-19 chr8 87931962 87932312 + 1.16667 NA Intergenic Intergenic -58122 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 212.834 chr1 13728602 13728852 + 1.16667 NA intron (NM_012231, intron 2 of 9) intron (NM_012231, intron 2 of 9) -20688 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 316.001-2 chr8 60781101 60781792 + 1.16667 NA intron (NM_017780, intron 3 of 37) intron (NM_017780, intron 3 of 37) 40187 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 146-9 chr11 55095552 55095787 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr -166486 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 200.667-34 chr21 32975090 32975318 + 1.16667 NA Intergenic Intergenic 16316 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 227.334-15 chr9 97956929 97957166 + 1.16667 NA Intergenic Intergenic -12195 NM_018437 55363 Hs.176626 NM_018437 ENSG00000136929 HEMGN CT155|EDAG|EDAG-1|NDR hemogen protein-coding 196-61 chr8 87229264 87229556 + 1.16667 NA intron (NM_173538, intron 5 of 10) intron (NM_173538, intron 5 of 10) 362995 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 369.667-2 chr6 136803365 136803944 + 1.16667 NA Intergenic L1ME1|LINE|L1 -11177 NM_005923 4217 Hs.186486 NM_005923 ENSG00000197442 MAP3K5 ASK1|MAPKKK5|MEKK5 mitogen-activated protein kinase kinase kinase 5 protein-coding 120.167-35 chr2 102547679 102547846 + 1.16667 NA Intergenic Intergenic -71791 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 250.834-4 chr3 30844317 30844770 + 1.16667 NA intron (NM_207359, intron 6 of 14) intron (NM_207359, intron 6 of 14) 50118 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 251.5-2 chr10 14404138 14404491 + 1.16667 NA Intergenic Intergenic -21037 NR_036181 100422843 NR_036181 ENSG00000266321 MIR4293 - microRNA 4293 ncRNA 216 chr1 48484065 48484391 + 1.16667 NA Intergenic L2c|LINE|L2 -12020 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 249.333 chr11 24506850 24507405 + 1.16667 NA intron (NM_001252008, intron 1 of 11) MER5A|DNA|hAT-Charlie 10074 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 264.5-16 chr6 65992398 65992829 + 1.16667 NA Intergenic MSTA|LTR|ERVL-MaLR 204734 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 164-6 chr10 46233217 46233510 + 1.16667 NA intron (NR_103828, intron 2 of 2) intron (NR_103828, intron 2 of 2) 36245 NR_103827 100996567 Hs.546758 NR_103827 ANTXRLP1 - ANTXR like pseudogene 1 pseudo 175.834-5 chr4 88242823 88243301 + 1.16667 NA Intergenic MER34A|LTR|ERV1 -11436 NM_001348985 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 202.834-3 chr4 119534751 119535032 + 1.16667 NA intron (NM_033437, intron 11 of 20) intron (NM_033437, intron 11 of 20) 80108 NR_037630 645513 Hs.677546 NR_037630 ENSG00000245958 LOC645513 - septin 7 pseudogene pseudo 440.334 chr16 83753241 83753801 + 1.16667 NA intron (NM_001220489, intron 10 of 12) AluJb|SINE|Alu 50455 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 229.5-15 chr20 53226456 53226706 + 1.16667 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 41298 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 400.001 chr1 47281113 47281573 + 1.16667 NA intron (NM_001282938, intron 13 of 18) intron (NM_001282938, intron 13 of 18) 32804 NM_003035 6491 Hs.525198 NM_003035 ENSG00000123473 STIL MCPH7|SIL STIL centriolar assembly protein protein-coding 177.5-68 chr5 161343617 161343856 + 1.16667 NA intron (NM_000813, intron 6 of 9) MIRb|SINE|MIR 204388 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 141.667-85 chr5 10384681 10384851 + 1.16667 NA intron (NM_005885, intron 4 of 25) L1ME3|LINE|L1 -17598 NR_162106 113218502 NR_162106 MIR10397 - microRNA 10397 ncRNA 374.667 chr2 192932638 192933301 + 1.16667 NA Intergenic L1M4|LINE|L1 183124 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 194.333-51 chrX 17029414 17029890 + 1.16667 NA intron (NM_001080975, intron 5 of 17) intron (NM_001080975, intron 5 of 17) 82994 NM_001080975 9185 Hs.186810 NM_004726 ENSG00000169891 REPS2 POB1 RALBP1 associated Eps domain containing 2 protein-coding 132.667-57 chr20 56294998 56295170 + 1.16667 NA Intergenic Intergenic 46352 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 248.834 chr1 20972617 20972885 + 1.16667 NA intron (NM_003760, intron 6 of 31) intron (NM_003760, intron 6 of 31) 15681 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 158.5-22 chr14 53450088 53450378 + 1.16667 NA Intergenic Intergenic 296879 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 254-24 chr5 132890242 132890561 + 1.16667 NA intron (NM_014423, intron 13 of 20) AluJb|SINE|Alu 16733 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 154.167-29 chr18 13048092 13048330 + 1.16667 NA intron (NM_032142, intron 15 of 44) MER44C|DNA|TcMar-Tigger 56849 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 298 chr10 72017159 72017591 + 1.16667 NA Intergenic LTR16C|LTR|ERVL 52980 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 136.167-36 chr2 35147540 35147663 + 1.16667 NA Intergenic Intergenic -323804 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 172-47 chr4 38790429 38790658 + 1.16667 NA Intergenic HAL1|LINE|L1 -7553 NM_030956 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 153.334-5 chr3 115701701 115701892 + 1.16667 NA intron (NM_002045, intron 2 of 2) intron (NM_002045, intron 2 of 2) 78286 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 278.167-11 chr8 129814312 129814831 + 1.16667 NA Intergenic L1PA16|LINE|L1 -27947 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 128.833-80 chr6 139716265 139716515 + 1.16667 NA Intergenic L1ME3|LINE|L1 -54683 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 155.334-2 chr14 70958961 70959148 + 1.16667 NA intron (NM_014982, intron 2 of 35) intron (NM_014982, intron 2 of 35) 51595 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 377.334 chr18 11535300 11535805 + 1.16667 NA Intergenic Intergenic 45504 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 212.167-20 chr5 59046643 59046843 + 1.16667 NA intron (NM_006203, intron 5 of 14) intron (NM_006203, intron 5 of 14) -7267 NM_001197222 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 187.667-31 chr2 225149989 225150293 + 1.16667 NA Intergenic Intergenic -107673 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 238.667 chr1 237137542 237137903 + 1.16667 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 95538 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 279.5-11 chr5 66207791 66208176 + 1.16667 NA intron (NR_146488, intron 1 of 1) intron (NR_146488, intron 1 of 1) 1463 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 125.5-12 chr11 92782092 92782262 + 1.16667 NA intron (NM_001008781, intron 6 of 24) AluJr4|SINE|Alu 133451 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 228-34 chr7 32378761 32379021 + 1.16667 NA intron (NM_001322059, intron 1 of 17) LTR8A|LTR|ERV1 49333 NM_001322059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 176.167-27 chr3 31269635 31270049 + 1.16667 NA Intergenic Intergenic -108055 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 274.333-10 chr4 59744050 59744405 + 1.16667 NA Intergenic L1ME2|LINE|L1 730654 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 255.833-8 chr2 63546659 63547107 + 1.16667 NA intron (NR_148705, intron 1 of 16) L1MEd|LINE|L1 41594 NM_001354045 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 176.667-55 chr4 44199718 44199941 + 1.16667 NA intron (NM_198353, intron 1 of 1) L1PA16|LINE|L1 182767 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 136.167-16 chr12 2306229 2306400 + 1.16667 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 36538 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 261.667-20 chr18 5249304 5249733 + 1.16667 NA Intergenic MLT2B2|LTR|ERVL 11418 NR_015389 339290 Hs.643553 NR_015389 ENSG00000263753 LINC00667 - long intergenic non-protein coding RNA 667 ncRNA 224.667-16 chr2 122729498 122729742 + 1.16667 NA Intergenic LTR16C|LTR|ERVL 343861 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 164.167-31 chr2 54129847 54130114 + 1.16667 NA intron (NM_001320588, intron 1 of 3) intron (NM_001320588, intron 1 of 3) 6697 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 248.667-4 chr10 31790752 31791131 + 1.16667 NA Intergenic L1ME3|LINE|L1 117985 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 262.5-9 chr2 157152648 157153162 + 1.16667 NA Intergenic Intergenic -104800 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 149.334-10 chr5 103136363 103136570 + 1.16667 NA intron (NM_001345878, intron 3 of 28) intron (NM_001345878, intron 3 of 28) 16165 NM_001276277 23262 Hs.212046 NM_015216 ENSG00000145725 PPIP5K2 CFAP160|DFNB100|HISPPD1|IP7K2|VIP2 diphosphoinositol pentakisphosphate kinase 2 protein-coding 264.333-10 chr4 30309493 30310054 + 1.16667 NA Intergenic Intergenic -410596 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 218.833-16 chr2 28707971 28708211 + 1.16667 NA TTS (NR_145832) TTS (NR_145832) 28114 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 176.334-12 chr6 135789546 135789783 + 1.16667 NA Intergenic Intergenic -62037 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 127.333-121 chr9 72277158 72277352 + 1.16667 NA Intergenic Intergenic -28181 NR_110952 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 145.667-51 chr2 209368637 209368792 + 1.16667 NA Intergenic Intergenic -55333 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 145-93 chr8 119578861 119579084 + 1.16667 NA intron (NM_001330600, intron 19 of 25) intron (NM_001330600, intron 19 of 25) 14036 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 235.667-19 chr4 185276142 185276496 + 1.16667 NA intron (NM_001317781, intron 5 of 18) MER117|DNA|hAT-Charlie 72082 NM_001317781 83891 Hs.369091 NM_031953 ENSG00000109762 SNX25 MSTP043|SBBI31 sorting nexin 25 protein-coding 189.5-18 chr14 69312584 69312972 + 1.16667 NA intron (NM_020692, intron 1 of 15) intron (NM_020692, intron 1 of 15) 52620 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 226.167-34 chr9 132595515 132595781 + 1.16667 NA intron (NR_136309, intron 18 of 18) intron (NR_136309, intron 18 of 18) 13042 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding 224.167-8 chr14 78379326 78379582 + 1.16667 NA intron (NR_073547, intron 4 of 20) L1MDa|LINE|L1 -24265 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 194.167-27 chr5 77283957 77284537 + 1.16667 NA intron (NM_001029853, intron 1 of 20) L1MC1|LINE|L1 73567 NM_001029851 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 214-51 chr8 138788426 138788707 + 1.16667 NA intron (NM_152888, intron 12 of 64) intron (NM_152888, intron 12 of 64) 125475 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 184-53 chr5 126017140 126017448 + 1.16667 NA Intergenic Intergenic -162283 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 305.334-3 chr2 57168033 57168449 + 1.16667 NA Intergenic Intergenic -739410 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 197.5-8 chr10 53823151 53823713 + 1.16667 NA exon (NM_001142765, exon 31 of 32) exon (NM_001142765, exon 31 of 32) -662798 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 361 chr13 87435304 87436035 + 1.16667 NA Intergenic L1PB4|LINE|L1 183071 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 177.834-2 chr17 68517087 68517310 + 1.16667 NA intron (NM_212472, intron 2 of 10) intron (NM_212472, intron 2 of 10) 1804 NM_001276290 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 151-21 chr14 50773324 50773599 + 1.16667 NA intron (NM_016350, intron 7 of 28) intron (NM_016350, intron 7 of 28) -48336 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 211-11 chr11 32352361 32352588 + 1.16667 NA Intergenic MLT1F1|LTR|ERVL-MaLR 47926 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 371-4 chr2 109007333 109007869 + 1.16667 NA Intergenic Intergenic -18381 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 170.333-25 chr14 51158503 51158794 + 1.16667 NA Intergenic MER65-int|LTR|ERV1 -62944 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 132.334-9 chr8 81209234 81209547 + 1.16667 NA Intergenic Intergenic -71146 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 151.667-79 chr7 49063071 49063222 + 1.16667 NA Intergenic Intergenic 138599 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 126.333-110 chr8 134646451 134646650 + 1.16667 NA intron (NM_020863, intron 2 of 15) L1M3|LINE|L1 48479 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 339.334-2 chr2 229656481 229656828 + 1.16667 NA intron (NM_139072, intron 1 of 12) intron (NM_139072, intron 1 of 12) 57901 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 227.334-7 chr2 80599305 80599610 + 1.16667 NA intron (NM_001282599, intron 9 of 11) intron (NM_001282599, intron 9 of 11) 286078 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 229.667-10 chr15 67352733 67353024 + 1.16667 NA intron (NM_001031715, intron 6 of 20) L1M5|LINE|L1 -97680 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 192.167-26 chr21 18893040 18893235 + 1.16667 NA Intergenic HAL1|LINE|L1 -133325 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 274.167-7 chr8 89170377 89170634 + 1.16667 NA Intergenic Intergenic 587206 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 177.5-46 chr20 48442174 48442611 + 1.16667 NA Intergenic MLT1A0|LTR|ERVL-MaLR 82481 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 295.167-7 chr2 171136553 171136857 + 1.16667 NA intron (NM_001136554, intron 1 of 20) intron (NM_001136554, intron 1 of 20) 24188 NM_012290 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 195.5-7 chr10 90744623 90744900 + 1.16667 NA intron (NM_019859, intron 2 of 3) MER20|DNA|hAT-Charlie 113278 NM_000872 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 161.5-9 chr12 59487237 59487494 + 1.16667 NA Intergenic L1ME3G|LINE|L1 -108664 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 393.167-3 chr8 107898752 107899174 + 1.16667 NA TTS (NM_001317942) TTS (NM_001317942) 182976 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 184.5-7 chr10 69299834 69300367 + 1.16667 NA intron (NM_033497, intron 4 of 20) L1ME3|LINE|L1 -15754 NM_033496 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 166.5-12 chr12 60420294 60420569 + 1.16667 NA Intergenic L1MEg|LINE|L1 731061 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 290.167-17 chr9 74586933 74587304 + 1.16667 NA intron (NM_006914, intron 1 of 9) intron (NM_006914, intron 1 of 9) -28416 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 190.167-4 chr10 29138838 29139365 + 1.16667 NA Intergenic AluJr4|SINE|Alu -149969 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 247.667-12 chr2 112013296 112013719 + 1.16667 NA intron (NM_006343, intron 15 of 18) intron (NM_006343, intron 15 of 18) -41762 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 293 chr13 105002338 105002986 + 1.16667 NA Intergenic Intergenic -463205 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 164.167-46 chr3 113944189 113944400 + 1.16667 NA intron (NM_001172105, intron 12 of 12) MLT1A1|LTR|ERVL-MaLR -3607 NM_001363952 254887 Hs.21902 NM_173570 ENSG00000184307 ZDHHC23 DHHC-23|NIDD zinc finger DHHC-type containing 23 protein-coding 296.667-12 chr5 109087396 109087938 + 1.16667 NA intron (NR_146155, intron 16 of 19) intron (NR_146155, intron 16 of 19) 163061 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 322.5-9 chr8 101989935 101990432 + 1.16667 NA intron (NR_126152, intron 2 of 4) intron (NR_126152, intron 2 of 4) 5751 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 265.334-10 chr2 194417751 194418076 + 1.16667 NA intron (NR_110222, intron 5 of 5) intron (NR_110222, intron 5 of 5) 73644 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 426-2 chr17 70220992 70221576 + 1.16667 NA Intergenic Intergenic 51749 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 166.167-46 chr5 68910891 68911075 + 1.16667 NA Intergenic Intergenic 118944 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 232.167-3 chr1 153037437 153038061 + 1.16667 NA Intergenic Intergenic 3371 NM_006945 6703 Hs.505327 NM_006945 ENSG00000163216 SPRR2D - small proline rich protein 2D protein-coding 313.834-2 chr2 67557185 67557486 + 1.16667 NA Intergenic MIR|SINE|MIR 160002 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 214.333-11 chr11 103198266 103198623 + 1.16667 NA intron (NM_001377, intron 48 of 88) MER5A|DNA|hAT-Charlie 89018 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 305-2 chr17 47150622 47151121 + 1.16667 NA intron (NM_001256, intron 9 of 18) AluSp|SINE|Alu 38424 NM_001353051 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 286.667-11 chr3 161018432 161018794 + 1.16667 NA intron (NM_001317912, intron 3 of 4) intron (NM_001317912, intron 3 of 4) 86119 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 232.5-13 chr14 88419129 88419431 + 1.16667 NA intron (NM_001040428, intron 4 of 10) L1MCb|LINE|L1 33623 NM_018418 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 190.834 chr11 90653481 90653644 + 1.16667 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) -97705 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 301.833-2 chr17 80856320 80856813 + 1.16667 NA intron (NM_020761, intron 12 of 33) intron (NM_020761, intron 12 of 33) -50934 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 200.333-28 chr3 102669445 102669713 + 1.16667 NA Intergenic Intergenic 234564 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 191.334-6 chr3 30212183 30212443 + 1.16667 NA Intergenic L1ME4c|LINE|L1 -278157 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 186-42 chr5 26679489 26679659 + 1.16667 NA Intergenic ERVL-E-int|LTR|ERVL 359012 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 192.833-33 chr8 16149166 16149594 + 1.16667 NA intron (NM_002445, intron 7 of 8) intron (NM_002445, intron 7 of 8) 36892 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 136.167-65 chr5 145056758 145056997 + 1.16667 NA Intergenic Intergenic 778465 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 255.001 chr3 150425959 150426200 + 1.16667 NA intron (NM_014779, intron 2 of 3) intron (NM_014779, intron 2 of 3) 17781 NM_001303264 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 140.167-18 chr14 56418733 56418859 + 1.16667 NA Intergenic Intergenic -95535 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 139.667-38 chr17 62587687 62587955 + 1.16667 NA intron (NM_001284363, intron 14 of 19) intron (NM_001284363, intron 14 of 19) -39849 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 223.833-28 chrX 67380609 67380875 + 1.16667 NA Intergenic L1MA1|LINE|L1 -163279 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 246.333-14 chr20 18708360 18708806 + 1.16667 NA intron (NM_080820, intron 4 of 5) AluSz|SINE|Alu -9875 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 360.834 chr11 43701124 43701484 + 1.16667 NA intron (NM_016142, intron 1 of 10) L1MA1|LINE|L1 20566 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 130.167-26 chr18 48505270 48505420 + 1.16667 NA Intergenic Intergenic -33686 NM_014772 9811 Hs.145230 NM_014772 ENSG00000134030 CTIF Gm672|KIAA0427 cap binding complex dependent translation initiation factor protein-coding 334.001-2 chr5 41505105 41505544 + 1.16667 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 5277 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 150.333-93 chr7 27441495 27441784 + 1.16667 NA Intergenic Intergenic -174335 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 152.167-54 chr4 121412479 121412628 + 1.16667 NA Intergenic L1PB4|LINE|L1 -31535 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 241.5-22 chr5 60491432 60491740 + 1.16667 NA TTS (NR_028508) TTS (NR_028508) -3521 NM_001349243 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 130.833-58 chr5 117555602 117555811 + 1.16667 NA non-coding (NR_046089, exon 5 of 6) non-coding (NR_046089, exon 5 of 6) 140194 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 138.833-55 chr3 122270690 122270845 + 1.16667 NA intron (NM_001178065, intron 4 of 6) L1M5|LINE|L1 -54481 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 246.5-8 chr11 91237873 91238253 + 1.16667 NA Intergenic L1MCa|LINE|L1 -368861 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 344.834-2 chr11 71995000 71995355 + 1.16667 NA intron (NM_018320, intron 7 of 8) intron (NM_018320, intron 7 of 8) -3732 NM_001039660 10068 Hs.591967 NM_005699 ENSG00000137496 IL18BP IL18BPa interleukin 18 binding protein protein-coding 135.5-72 chr7 83524327 83524452 + 1.16667 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 117042 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 144-79 chr9 29950936 29951302 + 1.16667 NA Intergenic L1MC2|LINE|L1 457335 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 305.667-7 chr17 65026532 65027192 + 1.16667 NA intron (NM_006572, intron 2 of 3) AluSp|SINE|Alu 28912 NM_001282425 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 206.334-3 chr11 102629579 102629857 + 1.16667 NA Intergenic Intergenic -4386 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 176.5-59 chr6 60646109 60646612 + 1.16667 NA Intergenic MIR3|SINE|MIR -927770 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 156-38 chr18 52851794 52852069 + 1.16667 NA intron (NM_005215, intron 2 of 28) intron (NM_005215, intron 2 of 28) -385170 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 241.834-11 chr5 172395223 172395893 + 1.16667 NA intron (NM_001017995, intron 3 of 12) intron (NM_001017995, intron 3 of 12) 58965 NM_001308175 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 355.834-2 chr21 26662280 26662801 + 1.16667 NA Intergenic LOR1-int|LTR|ERV1 -89254 NR_135472 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 280.167-4 chr20 24889893 24890315 + 1.16667 NA Intergenic L1M5|LINE|L1 -59165 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 258.501 chr9 102947342 102947710 + 1.16667 NA Intergenic Intergenic -47807 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 317-6 chr3 29282200 29282628 + 1.16667 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 1102 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 376.167-4 chr8 142688997 142689508 + 1.16667 NA Intergenic PABL_A-int|LTR|ERV1 8757 NM_005672 8000 Hs.652235 NM_005672 ENSG00000167653 PSCA PRO232 prostate stem cell antigen protein-coding 316.333-13 chr9 103330551 103330967 + 1.16667 NA Intergenic Intergenic -5726 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 302.834 chr2 56652685 56653200 + 1.16667 NA Intergenic Intergenic -467172 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 151.333-40 chr18 66634128 66634335 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -30141 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 132.834-7 chr7 52205551 52205684 + 1.16667 NA Intergenic HAL1|LINE|L1 -812361 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 303.001-2 chr18 54420204 54420531 + 1.16667 NA Intergenic Intergenic 62450 NR_110234 162681 Hs.208701 NM_173529 ENSG00000166845 C18orf54 LAS2 chromosome 18 open reading frame 54 protein-coding 202.167-42 chr9 134487007 134487190 + 1.16667 NA Intergenic Intergenic 80538 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 221.167-12 chr15 100754430 100754890 + 1.16667 NA Intergenic L1MC5a|LINE|L1 -95092 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 183.333-60 chr8 83760624 83760823 + 1.16667 NA Intergenic Intergenic 356965 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 223-29 chr6 51990867 51991109 + 1.16667 NA intron (NM_138694, intron 35 of 66) MIRb|SINE|MIR 96625 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 195.334 chr10 42683258 42683508 + 1.16667 NA non-coding (NR_120656, exon 4 of 5) non-coding (NR_120656, exon 4 of 5) 8376 NR_120656 101929397 Hs.729796 NR_120656 LINC01518 - long intergenic non-protein coding RNA 1518 ncRNA 219.334 chr1 41617329 41617646 + 1.16667 NA intron (NM_024503, intron 3 of 8) L3|LINE|CR1 -132804 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 133.667 chr1 14836847 14837018 + 1.16667 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -87197 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 204.334-3 chr4 51859392 51859603 + 1.16667 NA intron (NM_001287757, intron 2 of 11) intron (NM_001287757, intron 2 of 11) 15918 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 147.667-72 chr8 106495245 106495415 + 1.16667 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 47406 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 258.334-2 chr4 133379202 133379686 + 1.16667 NA Intergenic Intergenic 230150 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 259-27 chr9 9260276 9260594 + 1.16667 NA intron (NM_002839, intron 9 of 45) intron (NM_002839, intron 9 of 45) 402417 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 131.834-2 chr17 57890054 57890211 + 1.16667 NA intron (NM_001271875, intron 1 of 10) MIRb|SINE|MIR 13257 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 144.5-60 chr3 108607577 108607733 + 1.16667 NA intron (NM_014648, intron 2 of 32) intron (NM_014648, intron 2 of 32) 17933 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 199.333-3 chr1 81076129 81076409 + 1.16667 NA Intergenic Intergenic -229923 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 171.834 chr1 99769596 99769836 + 1.16667 NA Intergenic Charlie1b|DNA|hAT-Charlie -3081 NM_001361041 391059 Hs.454779 NM_001013660 ENSG00000156869 FRRS1 SDFR2|SDR2 ferric chelate reductase 1 protein-coding 255.667-9 chr15 44457956 44458273 + 1.16667 NA intron (NM_016396, intron 1 of 12) intron (NM_016396, intron 1 of 12) 30485 NM_016396 51496 Hs.497967 NM_016396 ENSG00000137770 CTDSPL2 HSPC058|HSPC129 CTD small phosphatase like 2 protein-coding 165.834-2 chr15 90963905 90964122 + 1.16667 NA TTS (NM_033544) TTS (NM_033544) -2356 NR_051984 100507118 Hs.366401 NR_051984 ENSG00000258725 PRC1-AS1 - PRC1 antisense RNA 1 ncRNA 202.167-11 chr14 62464084 62464313 + 1.16667 NA Intergenic Intergenic -324225 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 316.834 chr1 220551958 220552241 + 1.16667 NA intron (NM_018650, intron 1 of 17) ERVL-int|LTR|ERVL 23916 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 133.333-74 chr3 45305724 45305897 + 1.16667 NA Intergenic MER45R|DNA|hAT-Tip100 -79523 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 166-20 chr12 102590547 102590774 + 1.16667 NA Intergenic Intergenic -110097 NM_000618 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 169.667-25 chr14 84738188 84738362 + 1.16667 NA Intergenic Intergenic -533657 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 311.167-2 chr12 30854240 30854616 + 1.16667 NA Intergenic Charlie7|DNA|hAT-Charlie 58747 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 324-5 chr18 68405061 68405523 + 1.16667 NA Intergenic Intergenic 309816 NM_001350517 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 295.167-5 chr16 51551903 51552238 + 1.16667 NA Intergenic MLT1I|LTR|ERVL-MaLR -210449 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 180.833-2 chr1 190679405 190679789 + 1.16667 NA intron (NR_033922, intron 1 of 4) intron (NR_033922, intron 1 of 4) 54707 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 177.834-3 chr17 77962200 77962434 + 1.16667 NA Intergenic Intergenic -41920 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 178.5-58 chr5 25668812 25668978 + 1.16667 NA Intergenic MER31-int|LTR|ERV1 477942 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 158.667-46 chr2 133621150 133621320 + 1.16667 NA Intergenic L1PB1|LINE|L1 -52772 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 145.5-26 chr16 70738897 70739271 + 1.16667 NA intron (NM_001351157, intron 12 of 17) intron (NM_001351157, intron 12 of 17) -16011 NR_034083 100130894 Hs.678899 NR_034083 ENSG00000214353 VAC14-AS1 - VAC14 antisense RNA 1 ncRNA 228.334-10 chr8 126115928 126116363 + 1.16667 NA Intergenic Intergenic -164948 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 183.834-6 chr4 30747927 30748151 + 1.16667 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 27670 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 130-71 chr3 118249806 118249955 + 1.16667 NA Intergenic MER53|DNA|hAT -391888 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 130.834-4 chr4 142183422 142183623 + 1.16667 NA intron (NM_001331040, intron 15 of 25) intron (NM_001331040, intron 15 of 25) 546939 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 246.333-18 chr5 39405170 39405505 + 1.16667 NA intron (NM_001343, intron 1 of 14) intron (NM_001343, intron 1 of 14) 19643 NM_001343 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 218.667-26 chr4 83522118 83522397 + 1.16667 NA Intergenic MER39|LTR|ERV1 -13657 NM_001256422 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 117.834-2 chr19 29165095 29165207 + 1.16667 NA Intergenic Intergenic 48000 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 174.167-15 chr14 77246591 77246853 + 1.16667 NA intron (NM_020431, intron 18 of 23) intron (NM_020431, intron 18 of 23) -19496 NR_031661 100302236 NR_031661 ENSG00000221754 MIR1260A MIR1260|MIRN1260|hsa-mir-1260|hsa-mir-1260a|mir-1260a microRNA 1260a ncRNA 155.167-38 chr5 60691753 60692029 + 1.16667 NA intron (NM_001145208, intron 1 of 9) L1MA7|LINE|L1 8275 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 187.5-19 chr18 8000107 8000285 + 1.16667 NA intron (NM_002845, intron 7 of 30) MLT2B4|LTR|ERVL 366838 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 339.5-2 chr14 30679916 30680481 + 1.16667 NA intron (NM_016106, intron 14 of 24) intron (NM_016106, intron 14 of 24) 57879 NM_001257376 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 224.334-5 chr4 30841393 30841721 + 1.16667 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 121188 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 170.5-6 chr1 202335381 202335626 + 1.16667 NA intron (NM_014176, intron 2 of 6) intron (NM_014176, intron 2 of 6) 6433 NM_014176 29089 Hs.5199 NM_014176 ENSG00000077152 UBE2T FANCT|HSPC150|PIG50 ubiquitin conjugating enzyme E2 T protein-coding 302.334-4 chr14 67038054 67038621 + 1.16667 NA intron (NM_001024218, intron 9 of 21) L1MB2|LINE|L1 -151103 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 418.168 chr8 87572523 87572951 + 1.16667 NA Intergenic Intergenic 301278 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 305.334-2 chr11 29972681 29973039 + 1.16667 NA Intergenic Intergenic 9533 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 194-27 chr18 30710100 30710548 + 1.16667 NA Intergenic Intergenic 332418 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 232-24 chr4 126589307 126589612 + 1.16667 NA Intergenic L1PB4|LINE|L1 -1043498 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 271.667-18 chr7 48438127 48438499 + 1.16667 NA intron (NM_152701, intron 42 of 61) L1MB3|LINE|L1 266855 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 199.834-3 chr18 8121699 8122208 + 1.16667 NA intron (NM_002845, intron 13 of 30) (TGTTTT)n|Simple_repeat|Simple_repeat 245081 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 179.834-2 chr10 101652247 101652443 + 1.16667 NA intron (NR_136613, intron 4 of 7) intron (NR_136613, intron 4 of 7) 42825 NM_022039 6468 Hs.500822 NM_022039 ENSG00000107829 FBXW4 DAC|FBW4|FBWD4|SHFM3|SHSF3 F-box and WD repeat domain containing 4 protein-coding 316-4 chr3 19360474 19361108 + 1.16667 NA intron (NM_144633, intron 5 of 15) MER20B|DNA|hAT-Charlie -45860 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 118.834-3 chr1 184374908 184375028 + 1.16667 NA Intergenic L1ME4b|LINE|L1 -12061 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 248.667-2 chr1 191776439 191776694 + 1.16667 NA Intergenic L1MA6|LINE|L1 -381896 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 160.667-61 chr4 45726378 45726579 + 1.16667 NA Intergenic Intergenic 397576 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 281.667-4 chr10 106833735 106834173 + 1.16667 NA intron (NM_001206569, intron 2 of 25) AluY|SINE|Alu 330752 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 251.5-12 chr2 161184609 161184931 + 1.16667 NA intron (NM_001199135, intron 2 of 7) L2c|LINE|L2 24342 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 243.667-7 chr10 70854450 70854851 + 1.16667 NA intron (NM_003901, intron 4 of 14) intron (NM_003901, intron 4 of 14) 33231 NM_001289797 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 129.334-4 chr3 179473837 179473994 + 1.16667 NA Intergenic Intergenic -22445 NM_021629 59345 Hs.173030 NM_021629 ENSG00000114450 GNB4 CMTD1F G protein subunit beta 4 protein-coding 336.667-8 chr8 135191074 135191608 + 1.16667 NA Intergenic Intergenic -42790 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 167.167-59 chr8 104103107 104103337 + 1.16667 NA intron (NM_001348498, intron 19 of 24) L1MB7|LINE|L1 -120113 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 119.833-52 chr22 19492025 19492186 + 1.16667 NA intron (NM_001369291, intron 5 of 18) AluSz6|SINE|Alu 12185 NR_161281 8318 Hs.474217 NM_003504 ENSG00000093009 CDC45 CDC45L|CDC45L2|MGORS7|PORC-PI-1 cell division cycle 45 protein-coding 284.834-3 chr18 21651825 21652178 + 1.16667 NA intron (NM_138340, intron 8 of 8) intron (NM_138340, intron 8 of 8) 12213 NM_001308257 171586 Hs.397978 NM_138340 ENSG00000158201 ABHD3 LABH3 abhydrolase domain containing 3 protein-coding 388.167-2 chr12 15212474 15212850 + 1.16667 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 8755 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 178-70 chr9 29953930 29954192 + 1.16667 NA Intergenic L1MCa|LINE|L1 454393 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 197.834-11 chr7 37749666 37749920 + 1.16667 NA Intergenic L2a|LINE|L2 66027 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 190.167-5 chr10 45662403 45662665 + 1.16667 NA intron (NM_174890, intron 2 of 9) intron (NM_174890, intron 2 of 9) 10198 NM_001282905 93550 Hs.89029 NM_174890 ENSG00000172671 ZFAND4 ANUBL1 zinc finger AN1-type containing 4 protein-coding 210.501-2 chr18 57361504 57361962 + 1.16667 NA 3' UTR (NM_015879, exon 4 of 4) 3' UTR (NM_015879, exon 4 of 4) 9176 NM_015879 51046 Hs.23172 NM_015879 ENSG00000177511 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 304.5-4 chr12 4079794 4080373 + 1.16667 NA Intergenic Intergenic -193679 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 127-40 chr17 64635563 64635700 + 1.16667 NA intron (NM_022739, intron 1 of 18) L1MB7|LINE|L1 26676 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 216.833-23 chr7 38757889 38758232 + 1.16667 NA intron (NM_014396, intron 18 of 28) intron (NM_014396, intron 18 of 28) -70971 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 163.167-26 chr3 88373381 88373559 + 1.16667 NA intron (NM_001368167, intron 2 of 2) L1M4a1|LINE|L1 35014 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 177.333-45 chr4 15587584 15587870 + 1.16667 NA intron (NM_001080522, intron 32 of 37) intron (NM_001080522, intron 32 of 37) 67630 NM_012161 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 184.334-4 chr8 117516210 117516499 + 1.16667 NA Intergenic MIRb|SINE|MIR -4359 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 262-13 chr21 14673116 14673491 + 1.16667 NA Intergenic Intergenic -30196 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 176.333-62 chr8 137342015 137342329 + 1.16667 NA Intergenic Intergenic 71416 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 288.5-10 chr5 132089360 132089877 + 1.16667 NA Intergenic HERV16-int|LTR|ERVL 15829 NM_000758 1437 Hs.1349 NM_000758 ENSG00000164400 CSF2 CSF|GMCSF colony stimulating factor 2 protein-coding 208.334-7 chr6 46632040 46632479 + 1.16667 NA intron (NM_016593, intron 5 of 11) MER65A|LTR|ERV1 20559 NM_016593 51302 Hs.387367 NM_016593 ENSG00000146233 CYP39A1 - cytochrome P450 family 39 subfamily A member 1 protein-coding 236.334-7 chr2 239117074 239117281 + 1.16667 NA intron (NM_006037, intron 12 of 26) intron (NM_006037, intron 12 of 26) -31251 NR_039643 100616493 NR_039643 ENSG00000264810 MIR4441 - microRNA 4441 ncRNA 235.333-14 chr2 54649616 54650053 + 1.16667 NA exon (NM_003128, exon 26 of 36) exon (NM_003128, exon 26 of 36) -75178 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 184.833-30 chr6 165968964 165969217 + 1.16667 NA intron (NR_026860, intron 1 of 1) intron (NR_026860, intron 1 of 1) -18461 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 263.834-6 chr4 81893057 81893350 + 1.16667 NA Intergenic Intergenic -421296 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 340.834 chr2 27584667 27585009 + 1.16667 NA intron (NM_001271286, intron 2 of 12) L2c|LINE|L2 1796 NM_032434 84450 Hs.529178 NM_032434 ENSG00000243943 ZNF512 - zinc finger protein 512 protein-coding 121.167-94 chrX 118249797 118249975 + 1.16667 NA Intergenic Intergenic -96187 NM_001184966 54521 Hs.98510 NM_019045 ENSG00000131725 WDR44 RAB11BP|RPH11|SYM-4 WD repeat domain 44 protein-coding 161.334-3 chr12 119754052 119754247 + 1.16667 NA intron (NM_007174, intron 21 of 46) MIR|SINE|MIR -40425 NR_031589 100302274 NR_031589 ENSG00000283768 MIR1178 MIRN1178|hsa-mir-1178 microRNA 1178 ncRNA 195.167-23 chr22 46908508 46908702 + 1.16667 NA intron (NM_001284305, intron 7 of 12) intron (NM_001284305, intron 7 of 12) 7437 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 124-8 chr1 116205833 116205958 + 1.16667 NA Intergenic Intergenic 94140 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 136.333-102 chr9 3025892 3026020 + 1.16667 NA Intergenic Intergenic -155633 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 278.667 chr1 199833497 199834113 + 1.16667 NA Intergenic Intergenic -193905 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 202.334-9 chr8 81533217 81533407 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -1922 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 268.334-4 chr2 36871116 36871429 + 1.16667 NA intron (NM_003162, intron 10 of 17) Tigger3b|DNA|TcMar-Tigger 95264 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 336.834 chr5 28518793 28519147 + 1.16667 NA Intergenic Intergenic -231305 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 136.667-99 chr8 5913698 5914175 + 1.16667 NA Intergenic Intergenic 492612 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 300.667-2 chr10 114512168 114512659 + 1.16667 NA intron (NM_001352440, intron 6 of 20) L2c|LINE|L2 14500 NM_001322892 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 150.833-44 chr5 155902468 155902626 + 1.16667 NA Intergenic MIR|SINE|MIR -424210 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 156.667-22 chr11 92614475 92614769 + 1.16667 NA intron (NM_001008781, intron 2 of 24) L1MB8|LINE|L1 262526 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 345.167-6 chr5 23790738 23791102 + 1.16667 NA Intergenic CR1-16_AMi|LINE|CR1 -160428 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 144.167-45 chr2 217220039 217220213 + 1.16667 NA Intergenic MIRc|SINE|MIR -62607 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 223.333-18 chr2 123039695 123040138 + 1.16667 NA Intergenic Intergenic 33565 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 257.833-11 chr5 121545453 121545829 + 1.16667 NA Intergenic L1MA7|LINE|L1 223091 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 208.834-9 chr5 78661737 78662019 + 1.16667 NA Intergenic L1MB7|LINE|L1 -13106 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 254-21 chr4 108931215 108931630 + 1.16667 NA intron (NR_045756, intron 7 of 35) intron (NR_045756, intron 7 of 35) -168369 NM_001331033 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 182.667-12 chr11 90682328 90682610 + 1.16667 NA intron (NR_104190, intron 3 of 6) (AT)n|Simple_repeat|Simple_repeat -126612 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 113.167-41 chr2 218465102 218465222 + 1.16667 NA intron (NM_020935, intron 21 of 25) intron (NM_020935, intron 21 of 25) 46039 NM_007127 7429 Hs.654595 NM_007127 ENSG00000127831 VIL1 D2S1471|VIL villin 1 protein-coding 385.667-2 chr6 136443601 136444036 + 1.16667 NA intron (NM_001198617, intron 1 of 15) intron (NM_001198617, intron 1 of 15) 23057 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 155.834-6 chr6 145949838 145950192 + 1.16667 NA intron (NM_001370328, intron 5 of 31) intron (NM_001370328, intron 5 of 31) 14082 NM_173082 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 168.833-26 chr2 167420931 167421223 + 1.16667 NA Intergenic Intergenic 233705 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 182.667-50 chr5 156425507 156425871 + 1.16667 NA intron (NM_001128209, intron 2 of 7) L1PB2|LINE|L1 98525 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 161.334-7 chr7 41716649 41716823 + 1.16667 NA intron (NR_027118, intron 2 of 3) L2a|LINE|L2 -13646 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 269-17 chr8 124343087 124343470 + 1.16667 NA intron (NM_194291, intron 1 of 6) MER57A-int|LTR|ERV1 29421 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 437.5-5 chr6 73129044 73129685 + 1.16667 NA intron (NM_001160134, intron 9 of 11) intron (NM_001160134, intron 9 of 11) 14150 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 151.833-24 chr18 4548606 4548826 + 1.16667 NA Intergenic L1MEd|LINE|L1 -93409 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 194.167-2 chr1 73282986 73283388 + 1.16667 NA Intergenic L1MC1|LINE|L1 -22983 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 156.167-26 chr14 71253420 71253660 + 1.16667 NA Intergenic L1MC2|LINE|L1 -66936 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 301.834-5 chr8 76718196 76718485 + 1.16667 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -35065 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 240.5 chr12 98142496 98142767 + 1.16667 NA Intergenic L2|LINE|L2 -147183 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 165.167-58 chr8 91376203 91376464 + 1.16667 NA intron (NM_134266, intron 15 of 18) L1PA17|LINE|L1 127014 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 119.167-4 chr1 95630228 95630456 + 1.16667 NA Intergenic Intergenic 120226 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 217.334-9 chr9 130049566 130049796 + 1.16667 NA Intergenic AluJb|SINE|Alu -4025 NM_001287346 57720 Hs.512461 NM_020960 ENSG00000148358 GPR107 GCDRP|LUSTR1|bA138E2.2 G protein-coupled receptor 107 protein-coding 256.167-3 chr10 63155490 63155935 + 1.16667 NA TTS (NM_030759) TTS (NM_030759) 22384 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 153.334 chr1 69806702 69806886 + 1.16667 NA intron (NM_001370785, intron 4 of 26) intron (NM_001370785, intron 4 of 26) -112528 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 219.167-16 chr2 222203078 222203345 + 1.16667 NA intron (NM_181457, intron 7 of 7) MIR1_Amn|SINE|MIR -94936 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 189.167-30 chr21 24975240 24975569 + 1.16667 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 134854 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 200.334-4 chr2 125712556 125712806 + 1.16667 NA Intergenic Intergenic 405304 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 369.001-2 chr5 18235487 18235899 + 1.16667 NA Intergenic Intergenic 428419 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 260.834-8 chr8 86419599 86419922 + 1.16667 NA intron (NM_007013, intron 9 of 24) HAL1|LINE|L1 77213 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 194.334-8 chr8 110082343 110082584 + 1.16667 NA Intergenic L1PA13|LINE|L1 -106692 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 311.667-6 chr4 121987093 121987529 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -35251 NM_001130698 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 132.833-46 chr3 29383165 29383397 + 1.16667 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 101969 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 256.833 chr1 81865682 81866108 + 1.16667 NA intron (NM_001366002, intron 3 of 20) intron (NM_001366002, intron 3 of 20) 63442 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 241.501-2 chr3 87242690 87242936 + 1.16667 NA intron (NM_014043, intron 2 of 5) L1ME1|LINE|L1 15504 NM_014043 25978 Hs.476930 NM_014043 ENSG00000083937 CHMP2B ALS17|CHMP2.5|DMT1|VPS2-2|VPS2B charged multivesicular body protein 2B protein-coding 224.834-5 chr5 131124251 131124481 + 1.16667 NA Intergenic L1P2|LINE|L1 40890 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 203-45 chr8 10247599 10247924 + 1.16667 NA intron (NM_001199729, intron 4 of 6) intron (NM_001199729, intron 4 of 6) 152110 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 198.834-13 chr9 26042622 26042885 + 1.16667 NA Intergenic Intergenic -23922 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 235-8 chr12 40892404 40892776 + 1.16667 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) -15767 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 195.5-19 chr15 80204283 80204491 + 1.16667 NA intron (NM_001352888, intron 1 of 2) L1MB3|LINE|L1 47826 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 159.167-33 chr20 44574286 44574448 + 1.16667 NA intron (NM_007066, intron 1 of 3) L1MC5|LINE|L1 -8212 NM_001281445 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 129.167-13 chr11 27182419 27182640 + 1.16667 NA intron (NR_125767, intron 2 of 4) intron (NR_125767, intron 2 of 4) 36239 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 169-30 chr20 536747 536934 + 1.16667 NA intron (NM_001362770, intron 1 of 14) intron (NM_001362770, intron 1 of 14) 6950 NM_001895 1457 Hs.644056 NM_001895 ENSG00000101266 CSNK2A1 CK2A1|CKII|Cka1|Cka2|OCNDS casein kinase 2 alpha 1 protein-coding 444.167 chr10 42663458 42664181 + 1.16667 NA Intergenic L1MA9|LINE|L1 -24982 NR_130950 7582 Hs.435774 NM_006955 ENSG00000196693 ZNF33B KOX2|KOX31|ZNF11B zinc finger protein 33B protein-coding 165-18 chr14 63036121 63036322 + 1.16667 NA intron (NM_139318, intron 1 of 10) intron (NM_139318, intron 1 of 10) 9237 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 145.5-8 chr11 116435582 116435715 + 1.16667 NA Intergenic MIRc|SINE|MIR -203774 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 193.667-25 chr2 35399888 35400248 + 1.16667 NA Intergenic MLT1F2|LTR|ERVL-MaLR -71337 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 226-15 chr4 30561232 30561556 + 1.16667 NA Intergenic Intergenic -158975 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 117.167-34 chr18 71761548 71761804 + 1.16667 NA intron (NR_126324, intron 1 of 4) intron (NR_126324, intron 1 of 4) 20550 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 208.834-10 chr5 106223421 106223711 + 1.16667 NA Intergenic MER113|DNA|hAT-Charlie 787448 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 265-4 chr11 75610410 75610733 + 1.16667 NA intron (NM_207577, intron 1 of 2) intron (NM_207577, intron 1 of 2) 27375 NR_145823 105369391 Hs.689687 NR_145823 ENSG00000255326 LOC105369391 - uncharacterized LOC105369391 ncRNA 165.667-18 chr12 3383219 3383390 + 1.16667 NA intron (NM_001256536, intron 1 of 9) L1MD1|LINE|L1 1955 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 192-9 chr11 40121573 40121807 + 1.16667 NA intron (NR_047674, intron 1 of 1) intron (NR_047674, intron 1 of 1) 171440 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 213-6 chr11 56637850 56638070 + 1.16667 NA Intergenic Intergenic 4479 NM_001002925 338675 Hs.449692 NM_001002925 ENSG00000172464 OR5AP2 OR9J1 olfactory receptor family 5 subfamily AP member 2 protein-coding 295.501-2 chr5 146600863 146601141 + 1.16667 NA intron (NM_181678, intron 8 of 10) L1MB7|LINE|L1 -84889 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 179.5-19 chr2 166616923 166617136 + 1.16667 NA Intergenic L1MCa|LINE|L1 -130058 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 189.834-6 chr2 227945146 227945412 + 1.16667 NA Intergenic AluSx4|SINE|Alu 73648 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 208.001-3 chr9 26875498 26875678 + 1.16667 NA intron (NM_001167575, intron 4 of 5) intron (NM_001167575, intron 4 of 5) 17214 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 221.167 chr1 41233419 41233825 + 1.16667 NA intron (NM_001172218, intron 1 of 15) intron (NM_001172218, intron 1 of 15) 8684 NM_012236 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 290.167-7 chr22 41937082 41937436 + 1.16667 NA Intergenic Intergenic 2960 NM_001110215 79019 Hs.208912 NM_024053 ENSG00000100162 CENPM C22orf18|CENP-M|PANE1 centromere protein M protein-coding 114.667-61 chr2 221640586 221640834 + 1.16667 NA Intergenic MLT2B4|LTR|ERVL -66508 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 341.501 chr10 75497170 75497547 + 1.16667 NA intron (NM_001305581, intron 2 of 6) L1ME2z|LINE|L1 -55100 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 133.5-45 chr4 97498277 97498519 + 1.16667 NA Intergenic Intergenic 131472 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 197.667-63 chrX 95849589 95849808 + 1.16667 NA Intergenic L1MA1|LINE|L1 488204 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 118.334-2 chr13 88312525 88312670 + 1.16667 NA Intergenic Intergenic 169730 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 114.333-85 chr3 64271974 64272136 + 1.16667 NA Intergenic Intergenic -3882 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 261.167-6 chr17 31162903 31163329 + 1.16667 NA intron (NM_001042492, intron 3 of 57) L1ME3Cz|LINE|L1 68139 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 293.334-4 chr9 97952360 97952759 + 1.16667 NA Intergenic Intergenic -7707 NM_018437 55363 Hs.176626 NM_018437 ENSG00000136929 HEMGN CT155|EDAG|EDAG-1|NDR hemogen protein-coding 137.667-8 chr1 214649059 214649214 + 1.16667 NA intron (NM_016343, intron 14 of 19) intron (NM_016343, intron 14 of 19) 45941 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 162.167-27 chr21 30472355 30472754 + 1.16667 NA Intergenic Intergenic 7813 NM_181607 337882 Hs.61552 NM_181607 ENSG00000184351 KRTAP19-1 KAP19.1 keratin associated protein 19-1 protein-coding 209.5-10 chr14 47745555 47745771 + 1.16667 NA Intergenic Intergenic 15441 NR_037503 100500919 NR_037503 ENSG00000263945 MIR548Y - microRNA 548y ncRNA 288.167-11 chr8 136039868 136040259 + 1.16667 NA Intergenic Intergenic -490735 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 480.334 chr8 58227903 58228680 + 1.16667 NA Intergenic Intergenic 43810 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 187.334-7 chr4 81973893 81974108 + 1.16667 NA Intergenic Intergenic 399991 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 370.167-2 chr13 35101989 35102527 + 1.16667 NA intron (NM_015678, intron 11 of 57) L1M5|LINE|L1 159971 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 338.334-5 chr6 61120081 61120449 + 1.16667 NA Intergenic Intergenic -453865 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 250.667-8 chr3 107386418 107386728 + 1.16667 NA Intergenic Charlie30a|DNA|hAT-Charlie -4414 NR_126332 101929579 Hs.552750 NR_126332 LOC101929579 - uncharacterized LOC101929579 ncRNA 155.834-3 chr22 19306614 19306832 + 1.16667 NA Intergenic AluSq|SINE|Alu -15004 NM_001835 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 178.667-50 chr4 158922352 158922727 + 1.16667 NA intron (NM_152543, intron 3 of 4) intron (NM_152543, intron 3 of 4) 112690 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 195.5-28 chr20 40539920 40540304 + 1.16667 NA Intergenic L1MA10|LINE|L1 149124 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 192.833-19 chr2 103056638 103057047 + 1.16667 NA Intergenic L1MA2|LINE|L1 -72413 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 307.667-3 chr10 63019704 63019987 + 1.16667 NA Intergenic MIRc|SINE|MIR -113402 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 235.834 chr13 41837479 41837874 + 1.16667 NA intron (NM_001009814, intron 12 of 25) intron (NM_001009814, intron 12 of 25) 123409 NM_001009814 23078 Hs.368282 NM_015058 ENSG00000102763 VWA8 KIAA0564|P7BP2 von Willebrand factor A domain containing 8 protein-coding 147.167-25 chr17 79245452 79245801 + 1.16667 NA intron (NM_001082575, intron 3 of 14) L1MB3|LINE|L1 170689 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 306.834-2 chr14 53941148 53941669 + 1.16667 NA Intergenic Intergenic 7076 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 227.334 chr10 19223109 19223347 + 1.16667 NA intron (NM_001142308, intron 18 of 39) intron (NM_001142308, intron 18 of 39) 174427 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 141-31 chr16 12145234 12145395 + 1.16667 NA intron (NM_032167, intron 13 of 20) intron (NM_032167, intron 13 of 20) 168580 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 268.667-11 chr5 115562086 115562521 + 1.16667 NA Intergenic Intergenic -17528 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 156.167-61 chr8 127662250 127662468 + 1.16667 NA Intergenic Intergenic 71608 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 249.667-10 chr13 26591190 26591511 + 1.16667 NA intron (NM_006646, intron 1 of 9) L2a|LINE|L2 33647 NM_001291965 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 319.334-3 chr3 171754539 171755065 + 1.16667 NA intron (NM_002662, intron 1 of 26) intron (NM_002662, intron 1 of 26) 55681 NM_001130081 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 165.667-42 chr20 57936717 57936897 + 1.16667 NA Intergenic L1MD2|LINE|L1 -67097 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 116.834 chr1 99903854 99904087 + 1.16667 NA intron (NM_000028, intron 27 of 33) L1PA5|LINE|L1 52995 NM_000646 178 Hs.904 NM_000028 ENSG00000162688 AGL GDE amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase protein-coding 303.167-6 chr2 99797555 99797938 + 1.16667 NA intron (NM_001025108, intron 7 of 23) L1ME1|LINE|L1 -307729 NM_001321454 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 132-51 chr22 26813472 26813677 + 1.16667 NA Intergenic MIR|SINE|MIR -46637 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 214.167-8 chr16 76149110 76149506 + 1.16667 NA Intergenic Intergenic -128093 NM_001322179 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 254.334-6 chr4 58521715 58521974 + 1.16667 NA Intergenic Intergenic 14484 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 385.168 chr15 64075249 64075588 + 1.16667 NA 3' UTR (NM_001289108, exon 3 of 3) 3' UTR (NM_001289108, exon 3 of 3) 18420 NM_032231 84191 Hs.439548 NM_032231 ENSG00000166797 CIAO2A CIA2A|FAM96A cytosolic iron-sulfur assembly component 2A protein-coding 236 chr1 115253209 115253543 + 1.16667 NA Intergenic L1ME3D|LINE|L1 -29658 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 276.5-6 chr18 12358975 12359307 + 1.16667 NA intron (NM_006796, intron 7 of 16) intron (NM_006796, intron 7 of 16) 18135 NM_006796 10939 Hs.726355 NM_006796 ENSG00000141385 AFG3L2 SCA28|SPAX5 AFG3 like matrix AAA peptidase subunit 2 protein-coding 306.5-5 chr22 28207639 28208111 + 1.16667 NA intron (NM_001145418, intron 5 of 22) LTR86A2|LTR|ERVL -251994 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 259.501-4 chr9 31447415 31447657 + 1.16667 NA Intergenic Intergenic -66046 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 357.666 chr10 7023608 7024340 + 1.16667 NA Intergenic MSTB|LTR|ERVL-MaLR 162810 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 285.5-16 chr6 157745790 157746512 + 1.16667 NA Intergenic Intergenic -77095 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 235-12 chr15 49408598 49408977 + 1.16667 NA intron (NM_152647, intron 11 of 15) intron (NM_152647, intron 11 of 15) -14455 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 209.834-6 chr4 143414097 143414413 + 1.16667 NA intron (NM_207123, intron 1 of 10) intron (NM_207123, intron 1 of 10) 70795 NR_036091 100423017 NR_036091 ENSG00000265623 MIR3139 - microRNA 3139 ncRNA 238.5-17 chr21 19579542 19579809 + 1.16667 NA Intergenic Ricksha_0|DNA|MULE-MuDR 320080 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 163.5-16 chr12 44542574 44542789 + 1.16667 NA intron (NM_006159, intron 16 of 20) intron (NM_006159, intron 16 of 20) 332980 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 253.334-5 chr4 39258771 39259224 + 1.16667 NA intron (NM_025132, intron 28 of 36) AluSq2|SINE|Alu 76468 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 256.667-17 chr21 24382616 24382959 + 1.16667 NA Intergenic L1MEd|LINE|L1 -45953 NR_135519 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 146.834-2 chr2 115432483 115432628 + 1.16667 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 88740 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 206.834-4 chr14 72520873 72521127 + 1.16667 NA intron (NM_001370288, intron 15 of 16) L1MC5|LINE|L1 4180 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 255.167-3 chr10 122716824 122717201 + 1.16667 NA Intergenic MIRc|SINE|MIR -17166 NM_001010912 399814 Hs.363649 NM_001010912 ENSG00000183559 C10orf120 bA318C4.1 chromosome 10 open reading frame 120 protein-coding 247.667-2 chr1 236987050 236987513 + 1.16667 NA Intergenic L1MB7|LINE|L1 17160 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 267.501 chr10 60763340 60763626 + 1.16667 NA Intergenic L1MEc|LINE|L1 -14848 NM_001170406 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 263.167-2 chr10 18132817 18133122 + 1.16667 NA Intergenic L1PA8|LINE|L1 -7455 NM_201593 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 150.167-37 chr20 5666189 5666456 + 1.16667 NA Intergenic LTR105_Mam|LTR|ERVL -55316 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 221.501 chr2 29586573 29586819 + 1.16667 NA intron (NM_004304, intron 3 of 28) MamTip2|DNA|hAT-Tip100 -111319 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 194.334-2 chr15 83015112 83015375 + 1.16667 NA Intergenic Intergenic -3604 NM_001160116 123207 Hs.352541 NM_144597 ENSG00000169609 C15orf40 - chromosome 15 open reading frame 40 protein-coding 218-5 chr10 76202359 76202672 + 1.16667 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 419754 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 161-47 chr4 104510337 104510680 + 1.16667 NA intron (NR_125926, intron 1 of 9) intron (NR_125926, intron 1 of 9) -15614 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 138.334-8 chr5 37028592 37028757 + 1.16667 NA intron (NM_015384, intron 32 of 45) L1MC5a|LINE|L1 151905 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 208.334-5 chr3 117794227 117794438 + 1.16667 NA Intergenic Intergenic -103407 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 190.167-12 chr14 69303251 69303427 + 1.16667 NA intron (NM_020692, intron 1 of 15) intron (NM_020692, intron 1 of 15) 43181 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 166-74 chr8 144076242 144076432 + 1.16667 NA Intergenic MER68|LTR|ERVL -2335 NM_019037 54512 Hs.632041 NM_019037 ENSG00000178896 EXOSC4 RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A exosome component 4 protein-coding 293.167-10 chr5 81092818 81093142 + 1.16667 NA intron (NM_006909, intron 10 of 26) intron (NM_006909, intron 10 of 26) -132073 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 250.667-11 chr7 7205567 7205884 + 1.16667 NA intron (NM_020156, intron 1 of 3) L1MB3|LINE|L1 23110 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 247.5-6 chr13 78679790 78680204 + 1.16667 NA Intergenic Intergenic -20842 NM_024546 79596 Hs.567576 NM_024546 ENSG00000152193 OBI1 C13orf7|RNF219 ORC ubiquitin ligase 1 protein-coding 125-71 chr6 47609001 47609191 + 1.16667 NA intron (NM_012120, intron 15 of 17) intron (NM_012120, intron 15 of 17) -47376 NM_001368115 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 304.834-4 chr4 80501211 80501540 + 1.16667 NA intron (NM_152770, intron 2 of 5) A-rich|Low_complexity|Low_complexity 165655 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 185-37 chr4 31973790 31974163 + 1.16667 NA Intergenic Intergenic -23403 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 222.833-17 chr4 62795067 62795307 + 1.16667 NA Intergenic Intergenic -633422 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 360.5-9 chr5 27157209 27157603 + 1.16667 NA Intergenic THE1D-int|LTR|ERVL-MaLR -118820 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 127.667-52 chr21 28597710 28597841 + 1.16667 NA Intergenic Intergenic 58457 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 234.834-7 chr3 179944801 179945169 + 1.16667 NA intron (NM_001349396, intron 1 of 13) intron (NM_001349396, intron 1 of 13) 29240 NM_001256755 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 164.167-59 chr7 119624569 119624783 + 1.16667 NA intron (NR_131960, intron 4 of 4) intron (NR_131960, intron 4 of 4) 282699 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 247.001-2 chr7 71024144 71024364 + 1.16667 NA Intergenic L1MA3|LINE|L1 -107890 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 131.334-9 chr8 51411808 51411939 + 1.16667 NA intron (NM_144651, intron 15 of 22) intron (NM_144651, intron 15 of 22) 397572 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 212.334-3 chr2 113194529 113194751 + 1.16667 NA intron (NM_012455, intron 10 of 16) Tigger3c|DNA|TcMar-Tigger 20669 NM_012455 23550 Hs.516306 NM_012455 ENSG00000125637 PSD4 EFA6B|TIC pleckstrin and Sec7 domain containing 4 protein-coding 338.334 chr14 61957888 61958554 + 1.16667 NA intron (NM_001367663, intron 1 of 7) L1MA10|LINE|L1 30526 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 304.667-9 chr2 35537022 35537414 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR 65813 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 323.334-4 chr10 58644219 58644533 + 1.16667 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -70639 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 221.334-3 chr8 122393848 122394092 + 1.16667 NA Intergenic Intergenic 174674 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 328.334-3 chr8 100044144 100044475 + 1.16667 NA intron (NM_015668, intron 11 of 27) AluSz|SINE|Alu 39727 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 226.667-24 chr5 11535500 11535879 + 1.16667 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 53228 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 176.667-33 chr2 60572189 60572451 + 1.16667 NA Intergenic Intergenic -18666 NM_138559 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 247.834 chr4 83357483 83357703 + 1.16667 NA Intergenic L1ME2z|LINE|L1 -22440 NM_001166498 10855 Hs.44227 NM_006665 ENSG00000173083 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 175.5-28 chr20 23946362 23946580 + 1.16667 NA Intergenic MLT1I|LTR|ERVL-MaLR 40404 NM_178312 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 226.167-33 chr9 35150218 35150504 + 1.16667 NA Intergenic LTR25-int|LTR|ERV1 -11648 NM_001371186 223.834-8 chr6 81305563 81305961 + 1.16667 NA Intergenic Intergenic 446919 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 262.334-2 chr18 74917149 74917504 + 1.16667 NA intron (NM_017757, intron 6 of 7) A-rich|Low_complexity|Low_complexity 286363 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 233-26 chr9 97692799 97693126 + 1.16667 NA intron (NM_000380, intron 2 of 5) intron (NM_000380, intron 2 of 5) 4447 NR_149094 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 205.001 chr7 103670183 103670372 + 1.16667 NA intron (NM_005045, intron 11 of 64) intron (NM_005045, intron 11 of 64) -224070 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 205.167-11 chr13 21933611 21933923 + 1.16667 NA Intergenic Intergenic -55607 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 183.834-3 chr2 229195157 229195388 + 1.16667 NA intron (NM_001100818, intron 1 of 2) L1MC5a|LINE|L1 36820 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 172.5-67 chrX 149308932 149309166 + 1.16667 NA Intergenic MIR|SINE|MIR 196257 NM_000202 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 215.5-20 chr2 69451468 69451677 + 1.16667 NA Intergenic L2c|LINE|L2 -13944 NM_001002756 27247 Hs.430439 NM_015700 ENSG00000169599 NFU1 CGI-33|HIRIP|HIRIP5|MMDS1|NIFUC|Nfu|NifU NFU1 iron-sulfur cluster scaffold protein-coding 156.5-72 chr5 127644774 127645274 + 1.16667 NA Intergenic Intergenic -3997 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 118.667-82 chr3 180705382 180705575 + 1.16667 NA Intergenic Intergenic -25989 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 197.167-4 chr1 171190116 171190338 + 1.16667 NA intron (NM_001460, intron 2 of 8) MamRep434|DNA|TcMar-Tigger 4927 NM_001301347 2327 Hs.144912 NM_001460 ENSG00000094963 FMO2 FMO1B1 flavin containing dimethylaniline monoxygenase 2 protein-coding 161-20 chr15 78575958 78576248 + 1.16667 NA intron (NM_001307945, intron 1 of 5) L1M4|LINE|L1 10583 NM_000745 1138 Hs.1614 NM_000745 ENSG00000169684 CHRNA5 LNCR2 cholinergic receptor nicotinic alpha 5 subunit protein-coding 220.333-9 chr15 58658054 58658562 + 1.16667 NA intron (NM_001320570, intron 5 of 14) L1MA2|LINE|L1 35299 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 329.5-9 chr2 216585520 216586107 + 1.16667 NA Intergenic A-rich|Low_complexity|Low_complexity 21125 NR_110392 101928232 Hs.694592 NR_110392 LINC01280 - long intergenic non-protein coding RNA 1280 ncRNA 262.5-5 chr15 72262834 72263191 + 1.16667 NA intron (NR_136599, intron 8 of 22) L2|LINE|L2 9542 NM_001323528 56965 Hs.270244 NM_020213 ENSG00000137817 PARP6 ARTD17|PARP-6-B1|PARP-6-C|pART17 poly(ADP-ribose) polymerase family member 6 protein-coding 157.5-21 chr14 69466353 69466577 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -18263 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 270.333-11 chrX 84324734 84325010 + 1.16667 NA intron (NM_001177478, intron 9 of 9) intron (NM_001177478, intron 9 of 9) -99044 NR_031690 100302191 NR_031690 ENSG00000221494 MIR548I4 MIR548I-4|MIRN548I4|hsa-mir-548i-4 microRNA 548i-4 ncRNA 175.167-51 chr9 18488008 18488308 + 1.16667 NA intron (NM_052866, intron 1 of 12) intron (NM_052866, intron 1 of 12) 14005 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 174.167-20 chr2 38985097 38985577 + 1.16667 NA 3' UTR (NM_005633, exon 23 of 23) 3' UTR (NM_005633, exon 23 of 23) -24993 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 182.167-7 chr10 114734162 114734490 + 1.16667 NA intron (NM_001322886, intron 1 of 20) L2|LINE|L2 -30462 NR_120628 101927692 Hs.576909 NR_120628 ENSG00000228484 LOC101927692 - uncharacterized LOC101927692 ncRNA 193.834-5 chr12 18083504 18083732 + 1.16667 NA intron (NM_001286201, intron 4 of 4) intron (NM_001286201, intron 4 of 4) 6575 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 377.501 chr22 25664091 25664596 + 1.16667 NA intron (NM_001362778, intron 4 of 19) intron (NM_001362778, intron 4 of 19) -77845 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 330.668 chr11 94454860 94455176 + 1.16667 NA intron (NM_001330347, intron 14 of 19) intron (NM_001330347, intron 14 of 19) 11562 NR_031630 100302275 NR_031630 ENSG00000221230 MIR548L MIRN548L|hsa-mir-548l microRNA 548l ncRNA 252.667-20 chr5 27113246 27113680 + 1.16667 NA Intergenic L1PA8|LINE|L1 -74877 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 302.334-2 chr11 86000737 86001160 + 1.16667 NA intron (NM_001008660, intron 10 of 19) intron (NM_001008660, intron 10 of 19) 68136 NM_001206946 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 319.667-7 chr2 102563931 102564324 + 1.16667 NA Intergenic Intergenic -55426 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 182.333-32 chr2 47189694 47189990 + 1.16667 NA Intergenic Intergenic -12906 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 205.667-37 chr2 206433890 206434281 + 1.16667 NA Intergenic Intergenic -9447 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 214.834-3 chr15 52532547 52532807 + 1.16667 NA Intergenic Intergenic -3627 NM_000259 4644 Hs.21213 NM_000259 ENSG00000197535 MYO5A GS1|MYH12|MYO5|MYR12 myosin VA protein-coding 124.834-5 chr9 27946855 27947111 + 1.16667 NA 3' UTR (NM_001258282, exon 7 of 7) 3' UTR (NM_001258282, exon 7 of 7) -373117 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 243-23 chr3 71786902 71787298 + 1.16667 NA Intergenic Intergenic -1952 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 206.834-9 chr20 48170003 48170240 + 1.16667 NA Intergenic L1MB7|LINE|L1 -180004 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 142.5-71 chr8 137472143 137472541 + 1.16667 NA Intergenic Intergenic -58754 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 215.5-12 chr14 71901207 71901599 + 1.16667 NA Intergenic Intergenic -30768 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 172.167-47 chr8 140523083 140523352 + 1.16667 NA 3' UTR (NM_012154, exon 19 of 19) 3' UTR (NM_012154, exon 19 of 19) 11221 NR_040712 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex subunit 1 protein-coding 254.833-11 chr8 104603555 104604012 + 1.16667 NA Intergenic L2|LINE|L2 -14759 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 184.667-12 chr11 85753373 85753636 + 1.16667 NA intron (NM_001365827, intron 1 of 17) MIR|SINE|MIR 4565 NM_001162951 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 344.167-3 chr4 31523967 31524678 + 1.16667 NA intron (NR_149121, intron 1 of 2) L1MA4|LINE|L1 17778 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 254.001 chr10 126269831 126270075 + 1.16667 NA intron (NM_001288974, intron 3 of 18) intron (NM_001288974, intron 3 of 18) 118524 NM_001288975 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 186.667-5 chr10 67570856 67571150 + 1.16667 NA intron (NM_001127384, intron 3 of 17) intron (NM_001127384, intron 3 of 17) 94657 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 254.167-5 chr16 70569066 70569447 + 1.16667 NA intron (NM_012426, intron 23 of 25) intron (NM_012426, intron 23 of 25) -10639 NM_152456 146433 Hs.461214 NM_152456 ENSG00000157368 IL34 C16orf77|IL-34 interleukin 34 protein-coding 190.334-7 chr8 133343414 133343659 + 1.16667 NA Intergenic L2c|LINE|L2 -46232 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 121.834-6 chr5 108109598 108109729 + 1.16667 NA intron (NM_001163315, intron 6 of 8) MER39|LTR|ERV1 272435 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 310.667-4 chr21 29490946 29491367 + 1.16667 NA Intergenic Intergenic -4891 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 323.334-3 chr10 18272465 18272795 + 1.16667 NA intron (NM_000724, intron 1 of 12) THE1B|LTR|ERVL-MaLR 11908 NM_001330060 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 246.834 chr10 98456607 98456914 + 1.16667 NA TTS (NM_001166244) TTS (NM_001166244) -9797 NM_182639 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 138.333-39 chr15 65733362 65733567 + 1.16667 NA intron (NM_005848, intron 7 of 31) intron (NM_005848, intron 7 of 31) -14132 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 118.5-14 chr1 233927556 233927728 + 1.16667 NA intron (NM_173508, intron 2 of 7) Charlie2b|DNA|hAT-Charlie 22966 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 416.167-2 chr5 11658285 11659003 + 1.16667 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -69578 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 322.334-2 chr12 56803129 56803679 + 1.16667 NA Intergenic L1PREC2|LINE|L1 40080 NM_003725 8630 Hs.524513 NM_003725 ENSG00000025423 HSD17B6 HSE|RODH|SDR9C6 hydroxysteroid 17-beta dehydrogenase 6 protein-coding 272-15 chr8 63677451 63677854 + 1.16667 NA Intergenic Intergenic -91778 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 299-2 chr1 195170870 195171487 + 1.16667 NA Intergenic Intergenic 917537 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 168-62 chr5 138427964 138428160 + 1.16667 NA exon (NM_016604, exon 20 of 24) exon (NM_016604, exon 20 of 24) -10995 NR_073448 51308 Hs.416090 NM_016606 ENSG00000132563 REEP2 C5orf19|SGC32445|SPG72|Yip2d receptor accessory protein 2 protein-coding 284.334-4 chr3 96587216 96587498 + 1.16667 NA Intergenic MIR|SINE|MIR -227237 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 186.5-25 chr14 64213796 64214076 + 1.16667 NA promoter-TSS (NM_182913) promoter-TSS (NM_182913) -208 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 191.333-22 chr21 29658692 29659219 + 1.16667 NA intron (NM_000830, intron 4 of 16) L4_A_Mam|LINE|RTE-X 62915 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 186.5-16 chr11 105984300 105984480 + 1.16667 NA Intergenic L2c|LINE|L2 37850 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 277.167-6 chr4 143634879 143635267 + 1.16667 NA intron (NM_001168235, intron 2 of 7) intron (NM_001168235, intron 2 of 7) 65602 NM_001168235 166752 Hs.252714 NM_001168235 ENSG00000183090 FREM3 - FRAS1 related extracellular matrix 3 protein-coding 170.667-65 chr6 136896101 136896626 + 1.16667 NA intron (NM_000288, intron 8 of 9) L4_A_Mam|LINE|RTE-X -25938 NM_001008783 340146 Hs.369703 NM_001008783 ENSG00000182747 SLC35D3 FRCL1 solute carrier family 35 member D3 protein-coding 210.5-14 chr13 101154100 101154420 + 1.16667 NA intron (NM_001350749, intron 15 of 43) MIR|SINE|MIR -209896 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 170.5-55 chr5 39167649 39167874 + 1.16667 NA intron (NM_001243093, intron 2 of 18) L1ME3G|LINE|L1 51802 NM_001465 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 174.667-71 chr8 133495451 133495634 + 1.16667 NA intron (NM_003033, intron 3 of 8) LTR40c|LTR|ERVL 76345 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 219.5-34 chr5 155577306 155577510 + 1.16667 NA Intergenic MLT1I|LTR|ERVL-MaLR 563653 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 274.667-15 chr8 53196153 53196541 + 1.16667 NA Intergenic MIR3|SINE|MIR 55290 NM_000912 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 161.167-38 chr3 63386419 63386647 + 1.16667 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) -56779 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 132.5-58 chr3 122215714 122215847 + 1.16667 NA intron (NM_001178065, intron 1 of 6) intron (NM_001178065, intron 1 of 6) 31453 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 159.667-41 chr18 2329502 2329669 + 1.16667 NA Intergenic Intergenic 241920 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 275.167-3 chr14 32099148 32099561 + 1.16667 NA intron (NM_001173, intron 2 of 6) L2|LINE|L2 22050 NM_001173 394 Hs.592313 NM_001173 ENSG00000100852 ARHGAP5 GFI2|RhoGAP5|p190-B|p190BRhoGAP Rho GTPase activating protein 5 protein-coding 222-15 chr15 57652908 57653393 + 1.16667 NA intron (NR_104367, intron 11 of 15) intron (NR_104367, intron 11 of 15) -53371 NM_001018102 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 205.334-10 chr7 89581144 89581357 + 1.16667 NA Intergenic Intergenic -538150 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 175-48 chr5 139907554 139907730 + 1.16667 NA intron (NM_013983, intron 1 of 10) intron (NM_013983, intron 1 of 10) 111834 NM_032289 84249 Hs.21963 NM_032289 ENSG00000146005 PSD2 EFA6C pleckstrin and Sec7 domain containing 2 protein-coding 232.167-8 chr12 7455528 7455947 + 1.16667 NA Intergenic FAM|SINE|Alu -11552 NM_174941 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 380.167 chr1 118692701 118693346 + 1.16667 NA Intergenic L1MA4|LINE|L1 295320 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 295.667-2 chr15 56102640 56103115 + 1.16667 NA intron (NM_001370561, intron 8 of 11) intron (NM_001370561, intron 8 of 11) 87055 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 352.667-3 chr12 31486585 31487130 + 1.16667 NA intron (NM_144973, intron 2 of 20) intron (NM_144973, intron 2 of 20) -103066 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 205.334-2 chr11 57709456 57709683 + 1.16667 NA intron (NR_157587, intron 1 of 4) AluJo|SINE|Alu 2646 NM_153450 219541 Hs.43619 NM_153450 ENSG00000156603 MED19 DT2P1G7|LCMR1|MED19AS mediator complex subunit 19 protein-coding 208.167-27 chr7 3955857 3956067 + 1.16667 NA intron (NM_152744, intron 7 of 44) intron (NM_152744, intron 7 of 44) -173723 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 129.5-76 chr6 56171788 56171981 + 1.16667 NA intron (NM_030820, intron 3 of 29) L1MB1|LINE|L1 75696 NM_001318751 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 355.833 chr5 25063147 25063736 + 1.16667 NA Intergenic Intergenic 127215 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 296.833-6 chr3 170552444 170552964 + 1.16667 NA intron (NM_020949, intron 1 of 7) MER20B|DNA|hAT-Charlie 33371 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 165.833-4 chr1 168191067 168191391 + 1.16667 NA intron (NM_152902, intron 3 of 6) intron (NM_152902, intron 3 of 6) 12267 NM_001031800 261726 Hs.209431 NM_152902 ENSG00000143155 TIPRL TIP|TIP41|TIPRL1 TOR signaling pathway regulator protein-coding 120.167-3 chr1 185440277 185440586 + 1.16667 NA Intergenic Intergenic -105392 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 218.667-5 chr10 115914840 115915167 + 1.16667 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 279786 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 209.5-37 chr7 46525917 46526162 + 1.16667 NA Intergenic MER41-int|LTR|ERV1 171083 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 260.667-20 chr6 11969149 11969383 + 1.16667 NA Intergenic Intergenic 31978 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 236.667-32 chr5 27772205 27772706 + 1.16667 NA Intergenic Intergenic 300163 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 251-27 chr7 87172239 87172604 + 1.16667 NA intron (NR_024550, intron 5 of 17) intron (NR_024550, intron 5 of 17) 19867 NM_021145 9988 Hs.196129 NM_021145 ENSG00000135164 DMTF1 DMP1|DMTF|MRUL|hDMP1 cyclin D binding myb like transcription factor 1 protein-coding 272.334-2 chr17 48115263 48115623 + 1.16667 NA intron (NM_013323, intron 4 of 6) intron (NM_013323, intron 4 of 6) 7858 NM_013323 29916 Hs.15827 NM_013323 ENSG00000002919 SNX11 - sorting nexin 11 protein-coding 149.833-27 chr22 47824038 47824290 + 1.16667 NA intron (NR_122046, intron 8 of 8) MLT1H|LTR|ERVL-MaLR 192490 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 184.334 chr11 4148962 4149148 + 1.16667 NA Intergenic L1MA5A|LINE|L1 32977 NM_001330193 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 163.5-64 chr6 65065067 65065314 + 1.16667 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -236228 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 125.667-83 chr3 185852454 185852575 + 1.16667 NA Intergenic Intergenic -27472 NM_001291869 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 144-5 chr10 64185408 64185654 + 1.16667 NA Intergenic Intergenic -639997 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 175.667-57 chr6 71782126 71782409 + 1.16667 NA Intergenic L1MA4|LINE|L1 -104436 NM_014989 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 122 chr1 35001293 35001406 + 1.16667 NA intron (NM_007167, intron 14 of 15) intron (NM_007167, intron 14 of 15) -16002 NM_001195156 100506144 Hs.533986 NM_001195156 ENSG00000243749 TMEM35B ZMYM6NB transmembrane protein 35B protein-coding 209.167-5 chr11 55614639 55614838 + 1.16667 NA Intergenic MER41B|LTR|ERV1 -10340 NM_001004700 219429 Hs.553620 NM_001004700 ENSG00000172188 OR4C11 OR11-136|OR4C11P olfactory receptor family 4 subfamily C member 11 protein-coding 115-91 chrX 140595765 140595894 + 1.16667 NA Intergenic L1MC5a|LINE|L1 -90769 NM_005634 6658 Hs.157429 NM_005634 ENSG00000134595 SOX3 GHDX|MRGH|PHP|PHPX|SOXB SRY-box transcription factor 3 protein-coding 234.667-18 chr2 77919405 77919723 + 1.16667 NA intron (NR_110288, intron 1 of 3) L1ME3|LINE|L1 3630 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 201.334-5 chr2 56609975 56610278 + 1.16667 NA Intergenic L1MCb|LINE|L1 -424356 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 209.5-5 chr11 84660914 84661229 + 1.16667 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 59871 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 210.333-36 chr6 147053330 147053603 + 1.16667 NA intron (NR_034115, intron 5 of 10) intron (NR_034115, intron 5 of 10) -105459 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 138.5-17 chr11 97154762 97154963 + 1.16667 NA Intergenic Intergenic 646437 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 142.333-13 chr10 74152906 74153055 + 1.16667 NA intron (NM_001369123, intron 1 of 9) intron (NM_001369123, intron 1 of 9) 1759 NM_001369123 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 347.001 chr11 63401442 63401809 + 1.16667 NA intron (NM_080866, intron 6 of 9) L1M1|LINE|L1 31840 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 192.334 chr1 84926589 84926799 + 1.16667 NA exon (NM_001330647, exon 15 of 15) exon (NM_001330647, exon 15 of 15) -33488 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 209.5-15 chr17 61998188 61998524 + 1.16667 NA intron (NM_005121, intron 9 of 29) intron (NM_005121, intron 9 of 29) 66922 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 125.333-122 chr8 115336078 115336218 + 1.16667 NA Intergenic Intergenic 331865 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 233.834-7 chr16 5752066 5752329 + 1.16667 NA Intergenic L1PA13|LINE|L1 119730 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 234.5-32 chr8 59398750 59399036 + 1.16667 NA Intergenic L1MB3|LINE|L1 279683 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 252.5-18 chr3 46289385 46289869 + 1.16667 NA Intergenic Intergenic 47167 NM_001164680 1232 Hs.506190 NM_001837 ENSG00000183625 CCR3 CC-CKR-3|CD193|CKR3|CMKBR3 C-C motif chemokine receptor 3 protein-coding 137.167-53 chr5 112265051 112265246 + 1.16667 NA intron (NM_001347887, intron 5 of 23) intron (NM_001347887, intron 5 of 23) 36865 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 280.667-17 chr4 106814935 106815637 + 1.16667 NA Intergenic Intergenic 221027 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 199.5-31 chr5 18326951 18327332 + 1.16667 NA Intergenic Intergenic 519867 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 345.167-2 chr14 70389547 70390025 + 1.16667 NA intron (NM_001202549, intron 1 of 4) intron (NM_001202549, intron 1 of 4) 27304 NM_001202548 100529257 Hs.443661 NM_001202547 ENSG00000258644 SYNJ2BP-COX16 - SYNJ2BP-COX16 readthrough protein-coding 129.833-34 chr2 53924239 53924458 + 1.16667 NA intron (NM_014614, intron 14 of 46) intron (NM_014614, intron 14 of 46) 46645 NM_014614 23198 Hs.413801 NM_014614 ENSG00000068878 PSME4 PA200 proteasome activator subunit 4 protein-coding 169-16 chr14 75806674 75806853 + 1.16667 NA intron (NM_015072, intron 27 of 31) L2c|LINE|L2 145517 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 252.5-9 chr15 43011398 43011676 + 1.16667 NA intron (NM_174916, intron 29 of 46) L1ME3G|LINE|L1 -90759 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 123.667-55 chr2 161555510 161555665 + 1.16667 NA Intergenic Intergenic -47685 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 226.167-23 chr6 65198367 65198795 + 1.16667 NA intron (NM_001292009, intron 12 of 43) Tigger3b|DNA|TcMar-Tigger -102837 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 154.167-9 chr10 117748758 117748944 + 1.16667 NA Intergenic Intergenic -203783 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 211-5 chr10 60039414 60039836 + 1.16667 NA intron (NM_001204403, intron 43 of 43) MIR|SINE|MIR -78712 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 523.167 chr11 128818283 128818861 + 1.16667 NA Intergenic Tigger3b|DNA|TcMar-Tigger 23897 NM_000220 3758 Hs.527830 NM_000220 ENSG00000151704 KCNJ1 KIR1.1|ROMK|ROMK1 potassium voltage-gated channel subfamily J member 1 protein-coding 219.5-18 chr18 44307192 44307418 + 1.16667 NA Intergenic L1PA17|LINE|L1 224392 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 192.167-15 chr17 40602649 40602885 + 1.16667 NA Intergenic Intergenic -37295 NM_001838 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 460.334 chr9 28463573 28464679 + 1.16667 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 255179 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 183.333-28 chr2 75714767 75715097 + 1.16667 NA Intergenic Intergenic -4017 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 155-72 chr7 25418260 25418407 + 1.16667 NA Intergenic Intergenic -189847 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 233.834-6 chr12 72391689 72392017 + 1.16667 NA intron (NM_013381, intron 3 of 18) MLT1A|LTR|ERVL-MaLR -118344 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 272.001 chr3 116291583 116291931 + 1.16667 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -68267 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 243.5-28 chr7 41460553 41460982 + 1.16667 NA Intergenic L1MB1|LINE|L1 -233152 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 141.667-115 chr9 37474355 37474552 + 1.16667 NA Intergenic L1MEc|LINE|L1 -9003 NM_014872 9925 Hs.161276 NM_014872 ENSG00000168795 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 131.834-8 chr8 79561469 79561627 + 1.16667 NA Intergenic L1M4|LINE|L1 -49569 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 205.667-14 chr13 75066738 75066989 + 1.16667 NA Intergenic Intergenic 173518 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 189-11 chr2 61310267 61310564 + 1.16667 NA intron (NM_014709, intron 27 of 79) L1ME4b|LINE|L1 106962 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 442.001 chr20 52559008 52559823 + 1.16667 NA Intergenic L1MA5A|LINE|L1 -61423 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 161-6 chr10 9572105 9572381 + 1.16667 NA Intergenic L1MEf|LINE|L1 -276650 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 305.833-8 chr7 54718545 54719088 + 1.16667 NA Intergenic Intergenic 40395 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 225.667-8 chr14 21802513 21802772 + 1.16667 NA Intergenic MLT2E|LTR|ERVL -131625 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 315.667-12 chr4 101324376 101324675 + 1.16667 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) 5889 NR_031656 100302193 NR_031656 ENSG00000221265 MIR1255A MIRN1255A|hsa-mir-1255a microRNA 1255a ncRNA 170.833-12 chr14 66042190 66042490 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR -444031 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 251.834-7 chr8 139227693 139228151 + 1.16667 NA Intergenic MER45B|DNA|hAT-Tip100 -313881 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 280.667-19 chr4 183614844 183615147 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR 44190 NM_152682 201965 Hs.133337 NM_152682 ENSG00000182552 RWDD4 FAM28A|RWDD4A RWD domain containing 4 protein-coding 390.834 chr12 26915619 26916124 + 1.16667 NA intron (NM_018164, intron 11 of 16) intron (NM_018164, intron 11 of 16) 22110 NM_018164 55726 Hs.505077 NM_018164 ENSG00000064102 INTS13 ASUN|C12orf11|GCT1|Mat89Bb|NET48|SPATA30 integrator complex subunit 13 protein-coding 233.833-2 chr1 247937619 247938030 + 1.16667 NA intron (NM_001304535, intron 1 of 1) intron (NM_001304535, intron 1 of 1) 795 NM_175911 284521 Hs.372936 NM_175911 ENSG00000196071 OR2L13 OR2L14 olfactory receptor family 2 subfamily L member 13 protein-coding 165.334-4 chr4 70125848 70126013 + 1.16667 NA Intergenic Intergenic -7674 NR_033311 100337616 Hs.729824 NR_033311 CSN1S2BP CSN1S2B casein alpha s2 like B, pseudogene pseudo 230.667-36 chr9 28456783 28457136 + 1.16667 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 262346 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 176.834-5 chr7 38048196 38048442 + 1.16667 NA Intergenic L1MA4A|LINE|L1 127000 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 158.667-80 chr7 3470960 3471103 + 1.16667 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 169779 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 164.5-51 chr6 126474140 126474484 + 1.16667 NA intron (NR_104462, intron 3 of 3) (TTGTT)n|Simple_repeat|Simple_repeat -10319 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 325.834-2 chr5 60165538 60165864 + 1.16667 NA intron (NM_001349243, intron 2 of 16) (TA)n|Simple_repeat|Simple_repeat 206962 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 196.167-22 chr3 163579048 163579429 + 1.16667 NA Intergenic L1MCc|LINE|L1 -275937 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 213.5-3 chr11 37015997 37016434 + 1.16667 NA Intergenic L1MB1|LINE|L1 -417936 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 154.834-10 chr8 123507013 123507164 + 1.16667 NA intron (NM_001242463, intron 4 of 6) L2a|LINE|L2 25055 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 186.833-18 chr17 77207690 77207933 + 1.16667 NA intron (NM_001143999, intron 13 of 16) intron (NM_001143999, intron 13 of 16) 22598 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 158.334 chr1 176804404 176804611 + 1.16667 NA intron (NM_020318, intron 21 of 22) MER20|DNA|hAT-Charlie 224938 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 238.834-5 chr5 3063283 3063839 + 1.16667 NA Intergenic L1MC4a|LINE|L1 -114274 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 222.167-10 chr13 55241158 55241378 + 1.16667 NA Intergenic Intergenic 66814 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 173.334-4 chr4 140125344 140125559 + 1.16667 NA intron (NM_018717, intron 1 of 4) intron (NM_018717, intron 1 of 4) -2564 NR_147610 101927516 Hs.662570 NR_147610 LOC101927516 - uncharacterized LOC101927516 ncRNA 289.001 chr14 45674843 45675364 + 1.16667 NA Intergenic L1MA4|LINE|L1 40499 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 146.167-65 chr6 154255523 154255722 + 1.16667 NA intron (NM_001130699, intron 4 of 12) L1MEi|LINE|L1 74459 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 176-25 chr3 105270866 105271291 + 1.16667 NA Intergenic MLT1E2|LTR|ERVL-MaLR -95635 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 121.334-2 chr7 107891757 107891877 + 1.16667 NA intron (NM_001289752, intron 1 of 12) intron (NM_001289752, intron 1 of 12) 634 NM_000108 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 183.667-71 chr6 165444927 165445224 + 1.16667 NA intron (NM_006661, intron 6 of 22) L1MC4a|LINE|L1 -135470 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 244-21 chr7 17702965 17703406 + 1.16667 NA Intergenic L1MA9|LINE|L1 -144276 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 201-13 chr12 89985342 89985624 + 1.16667 NA Intergenic Intergenic 37790 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 330.667 chr1 15092551 15092849 + 1.16667 NA intron (NM_201628, intron 8 of 14) AluSz|SINE|Alu 59764 NR_027136 200197 Hs.531424 NM_182534 ENSG00000175147 TMEM51-AS1 C1orf126 TMEM51 antisense RNA 1 ncRNA 163.5-5 chr1 174098128 174098472 + 1.16667 NA Intergenic Intergenic 60987 NR_121197 102724601 Hs.563791 NR_121197 ENSG00000227373 RABGAP1L-DT - RABGAP1L divergent transcript ncRNA 235.834-2 chr14 63322390 63322673 + 1.16667 NA Intergenic Intergenic -3596 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 153.5-34 chr2 122650745 122651000 + 1.16667 NA Intergenic L1MB4|LINE|L1 422609 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 181.834-8 chr6 166131435 166131742 + 1.16667 NA Intergenic L1ME2|LINE|L1 33868 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 194-30 chr2 22394071 22394271 + 1.16667 NA Intergenic Intergenic -142308 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 207.334-8 chr8 28145173 28145352 + 1.16667 NA intron (NM_018091, intron 10 of 14) intron (NM_018091, intron 10 of 14) 52123 NM_001284220 55140 Hs.491336 NM_018091 ENSG00000134014 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 255-22 chr8 119746412 119746722 + 1.16667 NA intron (NM_003184, intron 23 of 25) intron (NM_003184, intron 23 of 25) -73177 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 179.5-7 chr14 53421648 53421968 + 1.16667 NA Intergenic Intergenic 268454 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 236-20 chr4 66485331 66485693 + 1.16667 NA Intergenic Intergenic 208688 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 271.667-21 chr8 140657583 140657913 + 1.16667 NA TTS (NM_001316342) TTS (NM_001316342) -22115 NM_012154 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 285.167-2 chr2 73656668 73657045 + 1.16667 NA intron (NR_003683, intron 1 of 6) intron (NR_003683, intron 1 of 6) 11937 NR_003683 200420 Hs.739204 NM_145300 ENSG00000163016 ALMS1P1 ALMS1L|ALMS1P ALMS1 pseudogene 1 pseudo 187.5-57 chr9 97368636 97368947 + 1.16667 NA intron (NM_020893, intron 31 of 36) L1MEd|LINE|L1 -5110 NR_031637 100302223 NR_031637 ENSG00000221269 MIR1302-8 MIRN1302-8|hsa-mir-1302-8 microRNA 1302-8 ncRNA 198.833-16 chr20 33219420 33219726 + 1.16667 NA intron (NM_178466, intron 1 of 6) L1M5|LINE|L1 2221 NM_178466 128861 Hs.360989 NM_178466 ENSG00000131059 BPIFA3 C20orf71|SPLUNC3 BPI fold containing family A member 3 protein-coding 284.667-4 chr12 7608972 7609643 + 1.16667 NA Intergenic L1PA13|LINE|L1 56601 NM_005889 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 144.667-61 chr21 28904944 28905073 + 1.16667 NA Intergenic Intergenic -19635 NR_047510 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 245.667-21 chr2 221837534 221837979 + 1.16667 NA Intergenic Intergenic -263554 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 231.834-3 chr14 61750483 61750695 + 1.16667 NA intron (NR_144368, intron 1 of 2) intron (NR_144368, intron 1 of 2) 508 NR_144368 105370526 Hs.661638 NR_144368 ENSG00000258667 HIF1A-AS3 - HIF1A antisense RNA 3 ncRNA 247.167-25 chr9 81047269 81047623 + 1.16667 NA Intergenic Intergenic 642089 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 238.5-14 chr2 22108999 22109280 + 1.16667 NA Intergenic Intergenic -398487 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 154.834 chr1 202278213 202278389 + 1.16667 NA intron (NM_001017403, intron 5 of 17) L2c|LINE|L2 63635 NM_014176 29089 Hs.5199 NM_014176 ENSG00000077152 UBE2T FANCT|HSPC150|PIG50 ubiquitin conjugating enzyme E2 T protein-coding 122.333-108 chr8 67350415 67350562 + 1.16667 NA intron (NR_136223, intron 2 of 2) MIRb|SINE|MIR 6654 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 170.667-61 chr5 130778195 130778397 + 1.16667 NA Intergenic Intergenic 386960 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 168.333-12 chr12 45246101 45246390 + 1.16667 NA intron (NM_001025356, intron 1 of 19) intron (NM_001025356, intron 1 of 19) 30150 NM_001025356 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 247.667-22 chr7 31610412 31610697 + 1.16667 NA intron (NM_194300, intron 8 of 12) L1M4|LINE|L1 57552 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 174.833 chr1 31315089 31315374 + 1.16667 NA intron (NM_001282574, intron 2 of 6) (CATAGTA)n|Simple_repeat|Simple_repeat 18249 NM_001282572 51538 Hs.524094 NM_016505 ENSG00000121766 ZCCHC17 HSPC251|PS1D|pNO40 zinc finger CCHC-type containing 17 protein-coding 148-29 chr14 70834589 70834817 + 1.16667 NA Intergenic Intergenic -25190 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 174.833-42 chr5 180043948 180044222 + 1.16667 NA intron (NM_001280801, intron 1 of 7) intron (NM_001280801, intron 1 of 7) 27674 NM_001280801 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 123.5-69 chr6 45645010 45645120 + 1.16667 NA Intergenic Intergenic 222790 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 378.001 chr10 37324912 37325403 + 1.16667 NA intron (NR_104061, intron 3 of 4) AluYb8|SINE|Alu 15971 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 363.834-3 chr4 61055552 61055973 + 1.16667 NA Intergenic Intergenic -87894 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 289-15 chr7 121671955 121672357 + 1.16667 NA Intergenic LTR16|LTR|ERVL -201005 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 157.334-9 chr8 113275765 113276011 + 1.16667 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 101264 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 252.167-13 chr5 72055117 72055439 + 1.16667 NA Intergenic Intergenic -52197 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 131.5-40 chr2 187474300 187474467 + 1.16667 NA intron (NM_006287, intron 6 of 7) intron (NM_006287, intron 6 of 7) -26131 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 239.834-6 chr8 139659964 139660442 + 1.16667 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 42920 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 246.167-4 chr10 120259125 120259503 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 95909 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 135-63 chr3 155843175 155843331 + 1.16667 NA intron (NM_004733, intron 1 of 5) intron (NM_004733, intron 1 of 5) 11153 NM_001363883 9197 Hs.478031 NM_004733 ENSG00000169359 SLC33A1 ACATN|AT-1|AT1|CCHLND|SPG42 solute carrier family 33 member 1 protein-coding 124-76 chr5 147773320 147773463 + 1.16667 NA intron (NM_001270934, intron 1 of 20) intron (NM_001270934, intron 1 of 20) 9337 NM_001282282 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 154.834-3 chr18 6906451 6906681 + 1.16667 NA intron (NM_001010000, intron 15 of 16) L1MD1|LINE|L1 23303 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 241.834-13 chr8 106568152 106568433 + 1.16667 NA intron (NM_018002, intron 3 of 15) MIRb|SINE|MIR -89516 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 162.167-31 chr3 57587635 57587865 + 1.16667 NA intron (NM_001660, intron 1 of 5) intron (NM_001660, intron 1 of 5) 9594 NM_001660 378 Hs.652183 NM_001660 ENSG00000168374 ARF4 ARF2 ADP ribosylation factor 4 protein-coding 219.5-4 chr1 208634708 208634983 + 1.16667 NA Intergenic MLT2B4|LTR|ERVL -93843 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 233.334-2 chr11 40290446 40290741 + 1.16667 NA intron (NM_001258419, intron 4 of 6) intron (NM_001258419, intron 4 of 6) 2537 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 182.167-40 chr8 124469863 124470091 + 1.16667 NA intron (NR_108047, intron 1 of 1) intron (NR_108047, intron 1 of 1) 4377 NR_108048 101927612 Hs.633137 NR_108047 ENSG00000245149 RNF139-AS1 - RNF139 antisense RNA 1 (head to head) ncRNA 210.5-21 chr19 28212474 28212678 + 1.16667 NA Intergenic Intergenic -394112 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 182.833-18 chr14 69958905 69959173 + 1.16667 NA intron (NM_001034852, intron 3 of 11) intron (NM_001034852, intron 3 of 11) -19094 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 513.834 chr15 86727220 86727893 + 1.16667 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -205324 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 197.5-53 chr8 78542263 78542497 + 1.16667 NA intron (NR_125389, intron 2 of 2) intron (NR_125389, intron 2 of 2) 16123 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 299-12 chr5 94452434 94453125 + 1.16667 NA intron (NM_001145678, intron 13 of 20) intron (NM_001145678, intron 13 of 20) 165825 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 183.833-39 chr7 82088794 82089108 + 1.16667 NA intron (NM_000722, intron 6 of 38) MER1B|DNA|hAT-Charlie 79774 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 527.834 chr22 26013479 26014324 + 1.16667 NA intron (NM_001318245, intron 42 of 43) L1ME3A|LINE|L1 -155561 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 262.333-4 chr11 95488433 95488843 + 1.16667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -256163 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 162.834-4 chr6 69037309 69037479 + 1.16667 NA intron (NM_001704, intron 13 of 31) MER58B|DNA|hAT-Charlie 402112 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 116.167-26 chr16 53403576 53403684 + 1.16667 NA Intergenic L1ME1|LINE|L1 30137 NR_119378 102723373 Hs.569678 NR_119378 ENSG00000261804 LOC102723373 - uncharacterized LOC102723373 ncRNA 147.833-22 chr15 25480759 25480991 + 1.16667 NA Intergenic Intergenic -41819 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 139.333-9 chr10 55508173 55508391 + 1.16667 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -90760 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 157.5-18 chr14 44903667 44903876 + 1.16667 NA intron (NM_001017923, intron 3 of 4) intron (NM_001017923, intron 3 of 4) 6496 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 153.667-69 chr6 155370560 155370875 + 1.16667 NA Intergenic Intergenic -56233 NM_001350501 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 220.667-2 chr10 74712697 74712986 + 1.16667 NA Intergenic L1MA8|LINE|L1 -112414 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 160.667-15 chr10 21318330 21318531 + 1.16667 NA Intergenic Intergenic 54520 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 187.5-23 chr2 138960006 138960240 + 1.16667 NA Intergenic Intergenic 62799 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 168.833-33 chr22 39553318 39553604 + 1.16667 NA Intergenic Intergenic -17292 NM_021096 8911 Hs.125116 NM_021096 ENSG00000100346 CACNA1I Cav3.3|ca(v)3.3 calcium voltage-gated channel subunit alpha1 I protein-coding 257.834-2 chr13 56053323 56053551 + 1.16667 NA Intergenic Intergenic 878983 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 247-7 chr15 88383014 88383363 + 1.16667 NA Intergenic Intergenic 84200 NM_022163 26589 Hs.534261 NM_022163 ENSG00000259494 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 288.167-5 chr16 63493689 63494097 + 1.16667 NA Intergenic Intergenic -1457455 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 139.333-50 chr2 75451954 75452114 + 1.16667 NA Intergenic L1MC4a|LINE|L1 -72034 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 197.5-18 chr12 22889329 22889618 + 1.16667 NA Intergenic Intergenic 264302 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 219.834-9 chr8 56400540 56400880 + 1.16667 NA Intergenic Intergenic -10000 NR_103832 442388 Hs.632065 NM_001145251 ENSG00000253542 SDR16C6P SDR16C6 short chain dehydrogenase/reductase family 16C member 6, pseudogene pseudo 374.834 chr11 42451240 42451845 + 1.16667 NA Intergenic Intergenic -197852 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 212.167-4 chr1 216509701 216509967 + 1.16667 NA intron (NM_001243518, intron 7 of 7) intron (NM_001243518, intron 7 of 7) -86386 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 277-15 chr5 135674214 135674634 + 1.16667 NA intron (NM_001349335, intron 3 of 10) L1MA4A|LINE|L1 -20489 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 294-4 chr2 106929421 106929891 + 1.16667 NA Intergenic L1MCa|LINE|L1 -42547 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 220.167-26 chr6 63912306 63912673 + 1.16667 NA intron (NM_001292009, intron 35 of 43) MER33|DNA|hAT-Charlie 105653 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 153.5-32 chr2 65194665 65194965 + 1.16667 NA Intergenic Intergenic -32880 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 292.501 chr1 39305586 39305883 + 1.16667 NA intron (NM_012090, intron 22 of 92) L2a|LINE|L2 -103339 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 426.334-2 chr12 59912922 59913581 + 1.16667 NA Intergenic Intergenic 223881 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 238.334-5 chr7 97676453 97676745 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger -55487 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 229.834-3 chr11 62335140 62335432 + 1.16667 NA Intergenic MLT1J|LTR|ERVL-MaLR -2162 NM_001083926 80150 Hs.535326 NM_025080 ENSG00000162174 ASRGL1 ALP|ALP1|CRASH asparaginase like 1 protein-coding 293.333-7 chr17 61088839 61089182 + 1.16667 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 278694 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 197.334-3 chr4 171758551 171758728 + 1.16667 NA Intergenic Intergenic -54765 NM_001034845 442117 Hs.386236 NM_001034845 ENSG00000174473 GALNTL6 GALNACT20|GALNT17|GalNAc-T6L polypeptide N-acetylgalactosaminyltransferase like 6 protein-coding 274.334-6 chr3 188887903 188888225 + 1.16667 NA 3' UTR (NM_001167671, exon 11 of 11) 3' UTR (NM_001167671, exon 11 of 11) 59575 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 215.667-15 chr15 81507922 81508206 + 1.16667 NA Intergenic Intergenic -133851 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 146.667-55 chr2 173580910 173581193 + 1.16667 NA Intergenic L1ME2|LINE|L1 226179 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 354.167-4 chr18 9764322 9765128 + 1.16667 NA intron (NM_006868, intron 1 of 6) intron (NM_006868, intron 1 of 6) 56424 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 207.167-14 chr15 63462610 63462936 + 1.16667 NA Intergenic AluJo|SINE|Alu -41738 NM_001256702 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 202.834-4 chr6 49668280 49668475 + 1.16667 NA Intergenic Intergenic -31503 NM_000324 6005 Hs.120950 NM_000324 ENSG00000112077 RHAG CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1 Rh associated glycoprotein protein-coding 269.334-6 chr3 15872162 15872435 + 1.16667 NA Intergenic L2|LINE|L2 -1473 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 273.167-6 chr14 69872104 69872620 + 1.16667 NA Intergenic L2b|LINE|L2 -7054 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 217.833 chr1 179410372 179410608 + 1.16667 NA intron (NR_073544, intron 11 of 25) AluSx|SINE|Alu 44446 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 192.5-48 chr8 37396322 37396530 + 1.16667 NA Intergenic Intergenic 97487 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 152.667-54 chr3 55582529 55582788 + 1.16667 NA intron (NM_015576, intron 16 of 16) intron (NM_015576, intron 16 of 16) 76811 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 187.5-38 chr5 32425047 32425392 + 1.16667 NA intron (NM_016107, intron 2 of 19) HAL1|LINE|L1 19521 NR_144318 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 220.667-43 chr8 101525282 101525512 + 1.16667 NA intron (NM_001330593, intron 1 of 15) Charlie1a|DNA|hAT-Charlie 32958 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 222.333-25 chr4 179802918 179803369 + 1.16667 NA Intergenic Intergenic 1356006 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 229.5-22 chr5 84029744 84030296 + 1.16667 NA intron (NM_001278642, intron 8 of 9) intron (NM_001278642, intron 8 of 9) -309165 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 222.167-12 chr13 89086492 89086938 + 1.16667 NA Intergenic Intergenic -148576 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 556.334 chr5 91654634 91655353 + 1.16667 NA Intergenic L1PB4|LINE|L1 -271676 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 243-19 chr2 189302086 189302426 + 1.16667 NA Intergenic Intergenic -122495 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 119.833-62 chr4 44278294 44278452 + 1.16667 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 170436 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 321.834-2 chr6 169332751 169333115 + 1.16667 NA Intergenic Intergenic -78819 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 137-75 chr4 127372581 127372840 + 1.16667 NA Intergenic Intergenic -260247 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 417.167 chr10 22018465 22019073 + 1.16667 NA Intergenic L1MB3|LINE|L1 -15039 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 154-76 chr8 12752133 12752303 + 1.16667 NA intron (NR_138256, intron 1 of 10).2 intron (NR_138256, intron 1 of 10).2 3308 NR_138255 91694 Hs.180178 NM_152271 ENSG00000154359 LONRF1 RNF191 LON peptidase N-terminal domain and ring finger 1 protein-coding 207.833-23 chr3 70856096 70856378 + 1.16667 NA Intergenic Tigger12c|DNA|TcMar-Tigger 208687 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 378.833-2 chr12 21594287 21594802 + 1.16667 NA intron (NM_021957, intron 1 of 15) L1M2|LINE|L1 10303 NM_021957 2998 Hs.82614 NM_021957 ENSG00000111713 GYS2 - glycogen synthase 2 protein-coding 205.334-4 chr2 63839256 63839446 + 1.16667 NA Intergenic AluSg|SINE|Alu -1613 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 148-52 chr3 82571150 82571683 + 1.16667 NA Intergenic Intergenic 585274 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 151.5-3 chr1 93837699 93838027 + 1.16667 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -8969 NR_030621 100126348 NR_030621 ENSG00000211575 MIR760 MIRN760|hsa-mir-760|mir-760 microRNA 760 ncRNA 228.167-29 chr8 133064306 133064755 + 1.16667 NA intron (NM_001045557, intron 1 of 7) MIRb|SINE|MIR -4176 NM_006748 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 249.667-14 chr16 6456059 6456344 + 1.16667 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -317608 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 327-2 chr14 45090252 45090686 + 1.16667 NA intron (NM_017922, intron 1 of 13) intron (NM_017922, intron 1 of 13) 6353 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 242.667-21 chr4 133496931 133497343 + 1.16667 NA Intergenic Intergenic 347843 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 363.667-4 chr20 56254326 56254885 + 1.16667 NA Intergenic Intergenic 5873 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 159.5-13 chr13 68564033 68564177 + 1.16667 NA Intergenic Intergenic 321220 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 178.833-31 chr5 71877690 71878177 + 1.16667 NA Intergenic L1MA5A|LINE|L1 158658 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 133.334 chr1 220619633 220619787 + 1.16667 NA intron (NM_018650, intron 9 of 17) intron (NM_018650, intron 9 of 17) -70653 NM_024709 79762 Hs.519839 NM_024709 ENSG00000162817 C1orf115 - chromosome 1 open reading frame 115 protein-coding 173.667-25 chr18 66252775 66253031 + 1.16667 NA Intergenic LTR16|LTR|ERVL 351187 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 265-6 chr12 130789479 130789985 + 1.16667 NA 3' UTR (NM_001980, exon 10 of 10) 3' UTR (NM_001980, exon 10 of 10) 49518 NM_001351052 2054 Hs.437585 NM_001980 ENSG00000111450 STX2 EPIM|EPM|STX2A|STX2B|STX2C syntaxin 2 protein-coding 240.834-7 chr7 46089223 46089773 + 1.16667 NA Intergenic L1M4|LINE|L1 -168226 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 184.667-16 chr12 121783922 121784134 + 1.16667 NA intron (NM_019034, intron 2 of 4) L2b|LINE|L2 9660 NM_019034 54509 Hs.707579 NM_019034 ENSG00000139725 RHOF ARHF|RIF ras homolog family member F, filopodia associated protein-coding 176.667-59 chr4 71976971 71977234 + 1.16667 NA Intergenic Intergenic -54702 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 152.167-62 chr6 124299544 124299757 + 1.16667 NA intron (NM_001040214, intron 2 of 6) intron (NM_001040214, intron 2 of 6) 16645 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 128.667-111 chrX 51048373 51048513 + 1.16667 NA Intergenic L1M3f|LINE|L1 122978 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 183-17 chr19 46570795 46571100 + 1.16667 NA intron (NM_001370550, intron 1 of 2) L1MA3|LINE|L1 29969 NM_001370551 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 155.834-4 chr3 62983541 62984043 + 1.16667 NA Intergenic AluJr|SINE|Alu -108376 NM_183393 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 241.333-24 chr6 33997335 33997641 + 1.16667 NA Intergenic L1ME3|LINE|L1 2563 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 180.667-75 chr8 117413750 117413950 + 1.16667 NA Intergenic Intergenic -106863 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 298.834-5 chr8 79784552 79784973 + 1.16667 NA intron (NR_125410, intron 3 of 3) intron (NR_125410, intron 3 of 3) 16620 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 330.667-2 chr1 172947563 172947926 + 1.16667 NA Intergenic Intergenic 103219 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 170.667-22 chr16 35826387 35826626 + 1.16667 NA Intergenic L1PA11|LINE|L1 79954 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 221.667-39 chr8 114169052 114169284 + 1.16667 NA Intergenic Intergenic -732229 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 244.334-3 chr10 30944424 30944655 + 1.16667 NA intron (NR_026560, intron 1 of 6) intron (NR_026560, intron 1 of 6) 54978 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 213.667-34 chr6 9494819 9495095 + 1.16667 NA Intergenic L2|LINE|L2 842748 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 184.834-4 chr2 133199566 133199864 + 1.16667 NA intron (NM_207481, intron 5 of 17) L1ME2|LINE|L1 -66480 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 308.5-12 chr6 2911518 2911956 + 1.16667 NA Intergenic Intergenic -8428 NM_004155 5272 Hs.104879 NM_004155 ENSG00000170542 SERPINB9 CAP-3|CAP3|PI-9|PI9 serpin family B member 9 protein-coding 242-2 chr10 21991013 21991419 + 1.16667 NA intron (NM_022365, intron 1 of 11) intron (NM_022365, intron 1 of 11) 12514 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 323.834-3 chr9 103346925 103347398 + 1.16667 NA Intergenic Intergenic -22128 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 236.167-9 chr17 69938041 69938327 + 1.16667 NA Intergenic Intergenic -23523 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 403.334 chr3 189281283 189281663 + 1.16667 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -40879 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 283.334-7 chr3 197061154 197061587 + 1.16667 NA intron (NM_001366216, intron 21 of 23) L1MC4a|LINE|L1 -31553 NM_005929 4241 Hs.184727 NM_005929 ENSG00000163975 MELTF CD228|MAP97|MFI2|MTF1|MTf melanotransferrin protein-coding 261.834-6 chrX 65255216 65255463 + 1.16667 NA Intergenic L1PA14|LINE|L1 -220598 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 313.167-2 chr15 63113430 63113839 + 1.16667 NA Intergenic L2c|LINE|L2 -8227 NM_032857 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 220.5-18 chr2 108852528 108852959 + 1.16667 NA intron (NM_001351549, intron 12 of 13) L1PA13|LINE|L1 65972 NR_147236 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 176.333-2 chr1 73039048 73039411 + 1.16667 NA Intergenic Intergenic -266941 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 200.334 chr13 63419782 63420031 + 1.16667 NA Intergenic MIRb|SINE|MIR -91812 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 191.834 chr10 5990895 5991075 + 1.16667 NA Intergenic Intergenic -12244 NM_001351095 3601 Hs.445124 NM_002189 ENSG00000134470 IL15RA CD215 interleukin 15 receptor subunit alpha protein-coding 130.834-3 chr3 81233107 81233297 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 239334 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 303.5-10 chr8 110407772 110408247 + 1.16667 NA Intergenic Intergenic -432238 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 129.667-19 chr12 24291746 24291872 + 1.16667 NA intron (NM_152989, intron 3 of 17) intron (NM_152989, intron 3 of 17) 68538 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 228.333-11 chr17 58774500 58775157 + 1.16667 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 18959 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 128.667-77 chr3 130965888 130966060 + 1.16667 NA intron (NM_001001485, intron 14 of 27) intron (NM_001001485, intron 14 of 27) 60880 NR_110229 28990 Hs.100878 NM_014065 ENSG00000034533 ASTE1 HT001 asteroid homolog 1 protein-coding 304-9 chrX 55587442 55587870 + 1.16667 NA Intergenic L1MA9|LINE|L1 -35744 NM_198451 139628 Hs.364260 NM_198451 ENSG00000189299 FOXR2 FOXN6 forkhead box R2 protein-coding 239.833 chr1 111370132 111370494 + 1.16667 NA Intergenic MSTA|LTR|ERVL-MaLR 19538 NR_029429 441897 Hs.568387 NR_029429 ENSG00000227179 PGCP1 - progastricsin pseudogene 1 pseudo 199.167-4 chr10 56992211 56992472 + 1.16667 NA Intergenic Intergenic 312218 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 175-36 chr3 46254095 46254402 + 1.16667 NA intron (NM_178329, intron 1 of 1) intron (NM_178329, intron 1 of 1) 11788 NM_001164680 1232 Hs.506190 NM_001837 ENSG00000183625 CCR3 CC-CKR-3|CD193|CKR3|CMKBR3 C-C motif chemokine receptor 3 protein-coding 210.667-43 chr5 16851688 16851898 + 1.16667 NA intron (NM_012334, intron 2 of 40) AluSg|SINE|Alu 84495 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 114.167-32 chr14 59376257 59376503 + 1.16667 NA Intergenic L1MC1|LINE|L1 89000 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 114.5-22 chr12 24433598 24433912 + 1.16667 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 128736 NM_001261414 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 116.667-22 chr12 28389467 28389627 + 1.16667 NA intron (NM_001330367, intron 7 of 11) intron (NM_001330367, intron 7 of 11) -198809 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 307.501-3 chr2 226567324 226567709 + 1.16667 NA Intergenic Intergenic 91277 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 116.667-66 chr22 19793140 19793315 + 1.16667 NA intron (NM_053004, intron 7 of 7) L1MEf|LINE|L1 36524 NM_080647 6899 Hs.173984 NM_005992 ENSG00000184058 TBX1 CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS T-box transcription factor 1 protein-coding 192.667-54 chr8 65855295 65855647 + 1.16667 NA Intergenic L2c|LINE|L2 -13407 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 253.333-4 chr1 218264626 218264903 + 1.16667 NA Intergenic MamGypLTR1a|LTR|Gypsy -20529 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 205.667-36 chr2 189394823 189395344 + 1.16667 NA Intergenic Intergenic -46350 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 117-55 chr2 181907896 181908039 + 1.16667 NA intron (NM_006751, intron 8 of 16) intron (NM_006751, intron 8 of 16) 16237 NM_001287503 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 252-15 chr8 80795302 80795545 + 1.16667 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 79045 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 228.333-14 chr2 20797878 20798580 + 1.16667 NA intron (NR_104233, intron 1 of 4) HAL1|LINE|L1 24872 NM_021925 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 314.334-2 chr20 36903135 36903437 + 1.16667 NA intron (NM_015474, intron 13 of 15) AluSc|SINE|Alu 27148 NM_080628 140711 Hs.472630 NM_080628 ENSG00000101342 TLDC2 C20orf118 TBC/LysM-associated domain containing 2 protein-coding 202.333-6 chr10 63025863 63026178 + 1.16667 NA Intergenic A-rich|Low_complexity|Low_complexity -107227 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 164.167-35 chr2 106322633 106322859 + 1.16667 NA Intergenic L1ME3C|LINE|L1 -46999 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 140.167 chr1 44657151 44657496 + 1.16667 NA intron (NM_001300746, intron 1 of 1) L1MC5a|LINE|L1 13733 NR_145816 109623472 NR_145816 SNORD145 - small nucleolar RNA, C/D box 145 snoRNA 424.834 chr1 247483442 247484247 + 1.16667 NA Intergenic AluSx|SINE|Alu -7224 NM_001004698 441932 Hs.591526 NM_001004698 OR2W5 OR2W5P|OST722 olfactory receptor family 2 subfamily W member 5 (gene/pseudogene) protein-coding 249.501-2 chr7 8606832 8607071 + 1.16667 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 173342 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 334.667-5 chr18 40637503 40638011 + 1.16667 NA Intergenic THE1B|LTR|ERVL-MaLR 571471 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 188.5-9 chr10 75667727 75667980 + 1.16667 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) 20344 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 137.167-40 chr21 43731874 43732032 + 1.16667 NA intron (NM_003681, intron 1 of 10) intron (NM_003681, intron 1 of 10) -9533 NM_001331030 8566 Hs.284491 NM_003681 ENSG00000160209 PDXK C21orf124|C21orf97|HEL-S-1a|PKH|PNK|PRED79 pyridoxal kinase protein-coding 114.667-31 chr14 64576498 64576657 + 1.16667 NA intron (NM_172365, intron 8 of 11) intron (NM_172365, intron 8 of 11) 26616 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 122-25 chr17 16031714 16031964 + 1.16667 NA 3' UTR (NM_006311, exon 46 of 46) 3' UTR (NM_006311, exon 46 of 46) 32015 NM_017775 54902 Hs.462316 NM_017775 ENSG00000011295 TTC19 2010204O13Rik|MC3DN2 tetratricopeptide repeat domain 19 protein-coding 203.333-41 chr5 104708728 104709072 + 1.16667 NA Intergenic Intergenic -390574 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 347.834-4 chr8 130653474 130654072 + 1.16667 NA Intergenic AluSx3|SINE|Alu -210099 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 188.834-4 chr8 63723475 63723738 + 1.16667 NA Intergenic Intergenic -45824 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 261.167-16 chr9 30036038 30036417 + 1.16667 NA Intergenic Intergenic 372227 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 158.5-9 chr10 21911195 21911386 + 1.16667 NA intron (NM_022365, intron 6 of 11) intron (NM_022365, intron 6 of 11) 92440 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 152.834 chr16 50864957 50865501 + 1.16667 NA Intergenic MER63C|DNA|hAT-Blackjack -13544 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 193.334-3 chr2 210101807 210102042 + 1.16667 NA intron (NM_001307976, intron 4 of 13) intron (NM_001307976, intron 4 of 13) 69485 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 279.167-15 chr7 141094084 141094552 + 1.16667 NA intron (NM_001195278, intron 1 of 3) intron (NM_001195278, intron 1 of 3) 20254 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 152-32 chr2 189960682 189961053 + 1.16667 NA Intergenic Intergenic 101862 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 132.334-7 chr6 62187448 62187590 + 1.16667 NA intron (NR_146874, intron 1 of 13) L1MA10|LINE|L1 98706 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 294.167-11 chr9 78648753 78649307 + 1.16667 NA Intergenic HAL1|LINE|L1 351905 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 144.833-19 chr14 26781088 26781313 + 1.16667 NA intron (NR_147061, intron 5 of 6) intron (NR_147061, intron 5 of 6) -28148 NR_110557 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 205.5-2 chr1 239244078 239244318 + 1.16667 NA Intergenic L1ME2|LINE|L1 -142370 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 208.834-11 chr6 12847845 12848354 + 1.16667 NA intron (NM_001322308, intron 3 of 13) intron (NM_001322308, intron 3 of 13) -109257 NM_001322311 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 177-26 chr18 7432510 7432796 + 1.16667 NA Intergenic L2|LINE|L2 28353 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 238.834-4 chr4 40267486 40267820 + 1.16667 NA Intergenic Intergenic -39532 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 191.667-41 chr4 38915423 38915633 + 1.16667 NA intron (NM_001350633, intron 6 of 12) intron (NM_001350633, intron 6 of 12) 47496 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 201.334-3 chr15 98021162 98021376 + 1.16667 NA non-coding (NR_146563, exon 3 of 3) non-coding (NR_146563, exon 3 of 3) 18231 NR_146565 105371008 NR_146563 LINC02251 - long intergenic non-protein coding RNA 2251 ncRNA 250.333-8 chr12 16071393 16071726 + 1.16667 NA Intergenic Intergenic 160227 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 186-53 chr7 89135912 89136304 + 1.16667 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -340371 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 472.667 chr3 112459310 112460234 + 1.16667 NA Intergenic Intergenic 39700 NM_181780 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 190.667-8 chr11 65381673 65381872 + 1.16667 NA intron (NM_001278251, intron 4 of 9) AluJo|SINE|Alu 199 NM_001352384 283130 Hs.661604 NM_182556 ENSG00000162241 SLC25A45 - solute carrier family 25 member 45 protein-coding 218-33 chr4 160833992 160834492 + 1.16667 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -1056458 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 132.334-4 chr18 55452025 55452156 + 1.16667 NA promoter-TSS (NR_132985) promoter-TSS (NR_132985) -443 NR_132985 105372127 Hs.666721 NR_132985 ENSG00000267028 TCF4-AS1 MIR4529HG TCF4 antisense RNA 1 ncRNA 193.667-56 chr8 87318109 87318332 + 1.16667 NA intron (NM_173538, intron 8 of 10) L1MEc|LINE|L1 451805 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 280.834-4 chr4 106400729 106401079 + 1.16667 NA Intergenic L2c|LINE|L2 -32720 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 120-6 chr1 178128249 178128456 + 1.16667 NA intron (NM_170692, intron 1 of 17) MIRb|SINE|MIR 34248 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 134.5-71 chr7 108148360 108148500 + 1.16667 NA non-coding (NR_163868, exon 33 of 33) non-coding (NR_163868, exon 33 of 33) -18069 NM_001318046 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 176.334-11 chr6 54575203 54575355 + 1.16667 NA Intergenic Intergenic 266838 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 152-26 chr18 2587612 2587827 + 1.16667 NA intron (NM_006101, intron 7 of 16) intron (NM_006101, intron 7 of 16) 16162 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 407.501 chr3 177004626 177005203 + 1.16667 NA Intergenic L1MD3|LINE|L1 -187913 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 152.667-62 chr3 191721683 191721874 + 1.16667 NA Intergenic MER21B|LTR|ERVL 260615 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 211-32 chr5 68493433 68493752 + 1.16667 NA Intergenic Intergenic 201015 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 162.833-48 chr7 126098654 126098859 + 1.16667 NA Intergenic L1PA16|LINE|L1 -834465 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 125.5-84 chr8 125261345 125261463 + 1.16667 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -168954 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 210.167-17 chr2 136526211 136526408 + 1.16667 NA Intergenic Intergenic -239236 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 136.667-116 chr9 110689469 110689898 + 1.16667 NA intron (NM_001166281, intron 3 of 11) (TA)n|Simple_repeat|Simple_repeat 20892 NM_001166281 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 138-7 chr1 209941673 209941872 + 1.16667 NA intron (NM_153262, intron 1 of 7) intron (NM_153262, intron 1 of 7) 3555 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 289.667-2 chr1 215087740 215088007 + 1.16667 NA intron (NM_001017424, intron 2 of 6) intron (NM_001017424, intron 2 of 6) 5136 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 170.167-51 chr7 115359990 115360219 + 1.16667 NA Intergenic Intergenic -128749 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 197.834-8 chr3 77390257 77390557 + 1.16667 NA intron (NM_001290039, intron 2 of 26) THE1B|LTR|ERVL-MaLR 292395 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 284.5-19 chrX 68098059 68098454 + 1.16667 NA intron (NM_002547, intron 18 of 24) L2c|LINE|L2 335239 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 207.833-12 chr16 83346707 83347104 + 1.16667 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -161441 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 367.667-4 chr8 137924106 137924578 + 1.16667 NA intron (NR_161374, intron 2 of 7) MLT1A0|LTR|ERVL-MaLR 159203 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 167.667-41 chr2 48592192 48592415 + 1.16667 NA intron (NM_172311, intron 3 of 10) MER103C|DNA|hAT-Charlie 11716 NM_001198594 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 203.001 chr15 65186281 65186832 + 1.16667 NA Intergenic AluSg|SINE|Alu -1214 NR_133680 10845 Hs.113823 NM_006660 ENSG00000166855 CLPX EPP2 caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding 345.667-2 chr10 25133135 25133560 + 1.16667 NA intron (NR_120649, intron 6 of 7) intron (NR_120649, intron 6 of 7) 20289 NR_120649 101929025 Hs.553324 NR_120649 ENSG00000231422 LINC01516 - long intergenic non-protein coding RNA 1516 ncRNA 240.5-22 chr7 23864002 23864486 + 1.16667 NA Intergenic Intergenic 154025 NM_001260505 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 360.5-2 chr12 13458859 13459269 + 1.16667 NA Intergenic L1ME3B|LINE|L1 -82319 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 164.334-10 chr6 53062827 53063067 + 1.16667 NA Intergenic Intergenic -1123 NM_014920 22858 Hs.417022 NM_014920 ENSG00000112144 ICK ECO|EJM10|LCK2|MRK intestinal cell kinase protein-coding 220.001-2 chr8 60295411 60295739 + 1.16667 NA Intergenic Intergenic -14175 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 180.5-18 chr15 52232656 52232952 + 1.16667 NA intron (NM_018728, intron 23 of 40) intron (NM_018728, intron 23 of 40) -41412 NM_016194 10681 Hs.155090 NM_006578 ENSG00000069966 GNB5 GB5|IDDCA|LADCI G protein subunit beta 5 protein-coding 162.5-4 chr1 219389529 219389727 + 1.16667 NA Intergenic MER34C|LTR|ERV1 167696 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 268.667-7 chr20 63209090 63209369 + 1.16667 NA intron (NM_017798, intron 3 of 4) Tigger3b|DNA|TcMar-Tigger 6902 NM_017798 54915 Hs.744852 NM_017798 ENSG00000149658 YTHDF1 C20orf21 YTH N6-methyladenosine RNA binding protein 1 protein-coding 114.667-40 chr18 4216672 4216816 + 1.16667 NA intron (NM_001242761, intron 1 of 11) L1MC2|LINE|L1 -47858 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 335.167-4 chr2 138035559 138035915 + 1.16667 NA Intergenic Intergenic -66147 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 342.668 chr5 26978770 26979172 + 1.16667 NA intron (NM_016279, intron 2 of 11) L1MEf|LINE|L1 59615 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 197.167-7 chr11 19649593 19649811 + 1.16667 NA intron (NM_001111018, intron 1 of 37) MLT1A0|LTR|ERVL-MaLR -63135 NM_145117 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 114.5-30 chr12 129706450 129706660 + 1.16667 NA intron (NM_133448, intron 1 of 8) intron (NM_133448, intron 1 of 8) 197470 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 190.667-15 chr15 98466032 98466291 + 1.16667 NA intron (NM_182562, intron 4 of 6) L1M4|LINE|L1 -45163 NR_146567 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 131.167-76 chr7 105541846 105541988 + 1.16667 NA intron (NR_144478, intron 3 of 13) (ATTT)n|Simple_repeat|Simple_repeat 9716 NM_021930 60561 Hs.531388 NM_021930 ENSG00000135249 RINT1 RINT-1 RAD50 interactor 1 protein-coding 264.334-2 chr17 70054887 70055275 + 1.16667 NA intron (NR_104130, intron 1 of 1) intron (NR_104130, intron 1 of 1) 3810 NR_104130 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 166.833-2 chr1 56587493 56587763 + 1.16667 NA Intergenic Intergenic -8065 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 155.167-46 chr7 103318658 103318812 + 1.16667 NA intron (NM_001129887, intron 10 of 14) MIR3|SINE|MIR 21300 NM_004279 9512 Hs.184211 NM_004279 ENSG00000105819 PMPCB Beta-MPP|MPP11|MPPB|MPPP52|P-52 peptidase, mitochondrial processing beta subunit protein-coding 290.833-3 chr4 63003264 63003824 + 1.16667 NA Intergenic Intergenic -841779 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 177.167-28 chr3 120487648 120487808 + 1.16667 NA Intergenic MIR3|SINE|MIR -36736 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 331.5 chr17 43321561 43321965 + 1.16667 NA Intergenic AluSp|SINE|Alu -21532 NR_002716 6066 NR_002716 ENSG00000274585 RNU2-1 RNU2|U2 RNA, U2 small nuclear 1 snRNA 260.667-5 chr15 79642745 79643002 + 1.16667 NA Intergenic L1PA15|LINE|L1 210357 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 292.834-6 chr2 159064045 159064451 + 1.16667 NA intron (NM_001350065, intron 3 of 27) intron (NM_001350065, intron 3 of 27) 95608 NR_146421 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 235.5-22 chr2 200301996 200302314 + 1.16667 NA Intergenic Intergenic -3724 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 327.5-5 chr22 36097178 36097658 + 1.16667 NA Intergenic AluSx1|SINE|Alu 63337 NM_014349 80833 Hs.474737 NM_014349 ENSG00000128284 APOL3 APOLIII|CG121|CG12_1|apoL-III apolipoprotein L3 protein-coding 302.667-6 chr11 10292012 10292425 + 1.16667 NA intron (NM_030962, intron 1 of 39) L1MC4|LINE|L1 1989 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 163.5-28 chr17 80786707 80786919 + 1.16667 NA intron (NM_020761, intron 6 of 33) MER57B2|LTR|ERV1 18819 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 274.167-4 chr4 165604806 165605142 + 1.16667 NA Intergenic L2|LINE|L2 -79665 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 147.334-5 chr14 68340942 68341343 + 1.16667 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 287645 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 226-12 chr2 174403574 174403867 + 1.16667 NA intron (NM_024583, intron 4 of 7) L1MD1|LINE|L1 7990 NM_024583 79634 Hs.470679 NM_024583 ENSG00000144306 SCRN3 SES3 secernin 3 protein-coding 161.167-43 chr5 27052550 27052822 + 1.16667 NA Intergenic Intergenic -14100 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 203.5-29 chr3 112945472 112945751 + 1.16667 NA intron (NM_138940, intron 1 of 2) L1MC1|LINE|L1 29492 NM_138939 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 210.667-57 chr9 99812200 99812550 + 1.16667 NA intron (NR_109802, intron 1 of 6) L1ME4b|LINE|L1 7514 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 328.667-4 chr14 87410167 87410562 + 1.16667 NA Intergenic Arthur1B|DNA|hAT-Tip100 244930 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 172.833-39 chr4 94433354 94433601 + 1.16667 NA Intergenic Intergenic -18380 NM_001256425 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 212.834-2 chr14 48919072 48919352 + 1.16667 NA Intergenic L1PB3|LINE|L1 667168 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 231.334-2 chr10 114158772 114159300 + 1.16667 NA intron (NM_001321829, intron 3 of 16) L2a|LINE|L2 15143 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 162.667-54 chr4 60621531 60621767 + 1.16667 NA Intergenic MIRb|SINE|MIR -300970 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 331-7 chr4 51953750 51954364 + 1.16667 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 66306 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 199.334 chr2 10796870 10797129 + 1.16667 NA intron (NM_001282704, intron 6 of 14) intron (NM_001282704, intron 6 of 14) 15786 NM_005742 10130 Hs.212102 NM_005742 ENSG00000143870 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A member 6 protein-coding 215.167-21 chr5 152426738 152427021 + 1.16667 NA Intergenic L2a|LINE|L2 -21600 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 149-70 chr6 45304000 45304269 + 1.16667 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -24183 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 164.667-27 chr15 76519438 76519671 + 1.16667 NA intron (NR_148227, intron 23 of 32) L2c|LINE|L2 -67093 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 338.5-3 chr2 22397395 22397844 + 1.16667 NA Intergenic Intergenic -138860 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 145.334-4 chr2 170422814 170423019 + 1.16667 NA intron (NM_001083615, intron 22 of 33) MER33|DNA|hAT-Charlie -71973 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 234.334-3 chr3 55679537 55679772 + 1.16667 NA intron (NR_132749, intron 16 of 17) intron (NR_132749, intron 16 of 17) -20185 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 219.001 chr5 133316991 133317216 + 1.16667 NA intron (NM_015082, intron 4 of 15) intron (NM_015082, intron 4 of 15) 110603 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 217.5-52 chr9 87249213 87249580 + 1.16667 NA Intergenic Intergenic 100752 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 239.167-18 chr7 136804352 136804673 + 1.16667 NA Intergenic L1MB4|LINE|L1 -64140 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 224.5-23 chr8 19418661 19419028 + 1.16667 NA intron (NM_001130518, intron 7 of 9) intron (NM_001130518, intron 7 of 9) 104868 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 126.5-63 chr3 165831985 165832169 + 1.16667 NA intron (NM_000055, intron 1 of 3) intron (NM_000055, intron 1 of 3) 5346 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 209-42 chr8 99321558 99321934 + 1.16667 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 214984 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 272.667-15 chr4 54062005 54062426 + 1.16667 NA intron (NM_012110, intron 1 of 5) intron (NM_012110, intron 1 of 5) 2390 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 124-7 chr1 112488995 112489147 + 1.16667 NA intron (NM_001291880, intron 1 of 4) L1ME5|LINE|L1 -19894 NM_024494 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 270.334-13 chr8 77452960 77453330 + 1.16667 NA intron (NR_125830, intron 1 of 2) intron (NR_125830, intron 1 of 2) 2448 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 167.5-8 chr10 16201128 16201310 + 1.16667 NA Intergenic Intergenic -235724 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 163.667-35 chr2 41322253 41322532 + 1.16667 NA Intergenic Intergenic -555163 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 138.5-31 chr15 47626154 47626414 + 1.16667 NA intron (NM_001198999, intron 4 of 19) intron (NM_001198999, intron 4 of 19) -91221 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 301.334-6 chr5 7012377 7012684 + 1.16667 NA Intergenic L1MB1|LINE|L1 -184609 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 265.167-11 chr5 72338885 72339439 + 1.16667 NA intron (NM_001284405, intron 6 of 8) MIR3|SINE|MIR 18789 NM_024754 79810 Hs.126906 NM_024754 ENSG00000049883 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 225.167-14 chr2 206385596 206385905 + 1.16667 NA Intergenic L1ME1|LINE|L1 -57782 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 237.667 chr1 69351595 69351837 + 1.16667 NA Intergenic L1ME2|LINE|L1 -81539 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 177-36 chr2 136735668 136735999 + 1.16667 NA Intergenic Intergenic -29712 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 245.834-5 chr19 36865004 36865242 + 1.16667 NA intron (NM_001242476, intron 3 of 3) LTR41|LTR|ERVL 13472 NM_001242475 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 176.334-7 chr2 102342394 102342607 + 1.16667 NA intron (NR_104167, intron 7 of 8) intron (NR_104167, intron 7 of 8) 5243 NR_104167 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 278.667-4 chr11 47969333 47969704 + 1.16667 NA Intergenic MIR|SINE|MIR -11041 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 196.001 chr6 154583935 154584132 + 1.16667 NA Intergenic L1M4c|LINE|L1 -73348 NM_001368117 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 217-32 chr8 74260739 74260960 + 1.16667 NA intron (NM_020647, intron 2 of 5) intron (NM_020647, intron 2 of 5) 60512 NM_001363050 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 262.501 chr2 27281184 27281520 + 1.16667 NA non-coding (NR_130126, exon 4 of 4) non-coding (NR_130126, exon 4 of 4) -1077 NM_187841 57159 Hs.516036 NM_032546 ENSG00000138100 TRIM54 MURF|MURF-3|RNF30|muRF3 tripartite motif containing 54 protein-coding 232.667-11 chr15 60220761 60221093 + 1.16667 NA Intergenic Intergenic 177059 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 321.334 chr1 89001261 89001830 + 1.16667 NA Intergenic MamRep1527|LTR|LTR -8585 NR_146184 56267 Hs.481898 NM_001008661 ENSG00000137944 KYAT3 CCBL2|KAT3|KATIII kynurenine aminotransferase 3 protein-coding 163.5-78 chr9 103890272 103890423 + 1.16667 NA Intergenic L1MA4|LINE|L1 -109362 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 276.167-8 chr4 30510420 30510858 + 1.16667 NA Intergenic Intergenic -209730 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 184.333-21 chr18 77160160 77160601 + 1.16667 NA Intergenic Intergenic -27597 NM_001025101 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 476.167-2 chr8 112683897 112684336 + 1.16667 NA intron (NM_001363185, intron 13 of 66) intron (NM_001363185, intron 13 of 66) 40623 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 144.167-41 chr2 174665462 174665608 + 1.16667 NA intron (NM_001077269, intron 1 of 7) intron (NM_001077269, intron 1 of 7) 17364 NM_001077269 7456 Hs.128067 NM_003387 ENSG00000115935 WIPF1 PRPL-2|WAS2|WASPIP|WIP WAS/WASL interacting protein family member 1 protein-coding 334-6 chr3 83033656 83034099 + 1.16667 NA Intergenic LTR33B|LTR|ERVL 1047735 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 218.833-9 chr13 20464449 20464693 + 1.16667 NA intron (NM_015974, intron 3 of 7) L1ME3Cz|LINE|L1 -30725 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 180.334-7 chr4 175098141 175098646 + 1.16667 NA Intergenic L1MA9|LINE|L1 180035 NM_001130705 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 220.834-2 chr5 99768051 99768335 + 1.16667 NA Intergenic Intergenic 234203 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 320.001-2 chr17 35615196 35615611 + 1.16667 NA intron (NM_001030006, intron 5 of 21) intron (NM_001030006, intron 5 of 21) 28081 NM_001282 163 Hs.514819 NM_001282 ENSG00000006125 AP2B1 ADTB2|AP105B|AP2-BETA|CLAPB1 adaptor related protein complex 2 subunit beta 1 protein-coding 200.834-4 chr5 18531911 18532153 + 1.16667 NA Intergenic Intergenic 724758 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 124.667-125 chr8 120357662 120357860 + 1.16667 NA intron (NM_021110, intron 45 of 47) intron (NM_021110, intron 45 of 47) 87389 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 212.5-7 chr15 60484475 60484704 + 1.16667 NA intron (NR_120341, intron 1 of 4) intron (NR_120341, intron 1 of 4) 5411 NR_120339 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 209.834-3 chr12 70937188 70937385 + 1.16667 NA Intergenic Intergenic -16548 NM_002849 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 248-8 chr2 192043450 192043797 + 1.16667 NA intron (NM_001305134, intron 5 of 9) ERVL-B4-int|LTR|ERVL 151310 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 195.167-5 chr11 35625233 35625551 + 1.16667 NA Intergenic Intergenic 6932 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 186.667-52 chr3 84909655 84910089 + 1.16667 NA Intergenic ERVL-E-int|LTR|ERVL 27782 NR_147147 105377192 NR_147147 ENSG00000242339 LINC02025 - long intergenic non-protein coding RNA 2025 ncRNA 134.167 chr1 109613242 109613454 + 1.16667 NA promoter-TSS (NM_005272) promoter-TSS (NM_005272) -264 NM_005272 2780 Hs.36973 NM_005272 ENSG00000134183 GNAT2 ACHM4|GNATC G protein subunit alpha transducin 2 protein-coding 220.334-6 chr3 28728584 28728843 + 1.16667 NA intron (NR_038840, intron 2 of 4) L2c|LINE|L2 153435 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 207.667-52 chrX 95593509 95593760 + 1.16667 NA Intergenic L1MB3|LINE|L1 -530408 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 242.667-7 chr11 126261157 126261652 + 1.16667 NA intron (NM_001330446, intron 7 of 8) intron (NM_001330446, intron 7 of 8) 7491 NM_003139 6734 Hs.368376 NM_003139 ENSG00000182934 SRPRA DP|SRPR|Sralpha SRP receptor subunit alpha protein-coding 192.834-3 chr2 185617727 185617915 + 1.16667 NA Intergenic L1MB1|LINE|L1 120898 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 299.167-10 chr8 124700293 124700715 + 1.16667 NA intron (NM_001282971, intron 2 of 14) intron (NM_001282971, intron 2 of 14) 27969 NM_001363299 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 212.5-21 chr4 46670621 46670875 + 1.16667 NA Intergenic L2a|LINE|L2 238497 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 227.834-6 chr4 142200945 142201210 + 1.16667 NA intron (NM_001331040, intron 14 of 25) intron (NM_001331040, intron 14 of 25) 564494 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 126.5-24 chr14 53761137 53761247 + 1.16667 NA Intergenic HAL1ME|LINE|L1 187292 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 231.167-33 chr8 104998509 104998767 + 1.16667 NA Intergenic L2a|LINE|L2 -319800 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 180.334-8 chr5 52946550 52946787 + 1.16667 NA intron (NM_181501, intron 27 of 28) intron (NM_181501, intron 27 of 28) -42684 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 215.667-28 chr20 17475358 17475580 + 1.16667 NA intron (NM_002594, intron 11 of 11) intron (NM_002594, intron 11 of 11) 55910 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 139.667-84 chr6 155788190 155788383 + 1.16667 NA Intergenic L1MCb|LINE|L1 -158511 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 157.167-51 chr5 101291789 101292196 + 1.16667 NA Intergenic L1PB|LINE|L1 -388710 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 158.167-50 chr8 112435624 112435851 + 1.16667 NA intron (NM_052900, intron 31 of 68) intron (NM_052900, intron 31 of 68) -207756 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 258.667 chr1 42472901 42473321 + 1.16667 NA intron (NM_001355227, intron 1 of 18) intron (NM_001355227, intron 1 of 18) 9825 NM_001355224 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 218.833-13 chr17 65462939 65463368 + 1.16667 NA Intergenic AluY|SINE|Alu 5612 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 189.334 chr2 209544861 209545080 + 1.16667 NA intron (NM_001039538, intron 2 of 14) intron (NM_001039538, intron 2 of 14) -34366 NM_001363913 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 232.167-16 chr2 69854563 69855016 + 1.16667 NA intron (NM_178439, intron 8 of 13) intron (NM_178439, intron 8 of 13) 25129 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 243.833-17 chr4 55864479 55864963 + 1.16667 NA intron (NM_001024924, intron 4 of 18) L1ME4a|LINE|L1 11071 NM_178237 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 192-55 chr9 73331242 73331460 + 1.16667 NA Intergenic L1MA9|LINE|L1 179486 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 149.5-26 chr17 32182035 32182202 + 1.16667 NA intron (NM_001033566, intron 6 of 19) L2a|LINE|L2 -30547 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo 233-5 chr11 25682539 25682910 + 1.16667 NA Intergenic Intergenic -506399 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 331.167 chr14 68533720 68534288 + 1.16667 NA intron (NM_001321818, intron 10 of 10) L2|LINE|L2 94783 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 236-30 chr9 30284153 30284749 + 1.16667 NA Intergenic Intergenic 124003 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 348.334-4 chr3 187770829 187771134 + 1.16667 NA Intergenic LTR33C|LTR|ERVL -25513 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 257.001-3 chr8 34844224 34844586 + 1.16667 NA intron (NR_125746, intron 3 of 3) intron (NR_125746, intron 3 of 3) 60484 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 299.167-3 chr2 117777428 117777784 + 1.16667 NA Intergenic Intergenic -37085 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 321-6 chr2 209197839 209198434 + 1.16667 NA Intergenic L1MB3|LINE|L1 -225911 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 316.667-6 chr18 1852919 1853278 + 1.16667 NA Intergenic Intergenic -493469 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 194-31 chr2 47612834 47613020 + 1.16667 NA Intergenic Intergenic -42596 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 257.667-14 chr6 5662093 5662400 + 1.16667 NA intron (NM_006567, intron 6 of 6) intron (NM_006567, intron 6 of 6) 33026 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 150.667-67 chr3 168502859 168503117 + 1.16667 NA intron (NR_021485, intron 3 of 15) L1MB7|LINE|L1 -48866 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 145.167-5 chr1 113931076 113931315 + 1.16667 NA intron (NM_001369807, intron 1 of 15) intron (NM_001369807, intron 1 of 15) 1351 NM_001369807 204851 Hs.532363 NM_152696 ENSG00000163349 HIPK1 Myak|Nbak2 homeodomain interacting protein kinase 1 protein-coding 248.167-7 chr11 35742712 35742984 + 1.16667 NA intron (NM_017583, intron 4 of 4) MIR|SINE|MIR 80073 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 231.167-34 chr8 120224668 120225108 + 1.16667 NA intron (NM_021110, intron 14 of 47) intron (NM_021110, intron 14 of 47) 99786 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 198.834-9 chr5 167174905 167175383 + 1.16667 NA intron (NM_001122679, intron 1 of 29) L1MA9|LINE|L1 -6743 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 160.833-35 chr4 36763865 36764138 + 1.16667 NA Intergenic Intergenic -122101 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 272.5-5 chr11 83939203 83939649 + 1.16667 NA intron (NM_001142699, intron 14 of 27) intron (NM_001142699, intron 14 of 27) -257001 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 160.5-29 chr2 205486176 205486485 + 1.16667 NA intron (NM_057177, intron 19 of 21) intron (NM_057177, intron 19 of 21) -196170 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 140.833-20 chr15 70984471 70984604 + 1.16667 NA intron (NM_017691, intron 11 of 15) intron (NM_017691, intron 11 of 15) 92094 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 190.5-16 chr14 32677164 32677402 + 1.16667 NA intron (NM_004274, intron 7 of 13) intron (NM_004274, intron 7 of 13) -261596 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 245.5-14 chr3 174024824 174025372 + 1.16667 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -104302 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 215.834-3 chr2 139875708 139875976 + 1.16667 NA Intergenic MIRb|SINE|MIR 710843 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 179.334-9 chr8 118334944 118335207 + 1.16667 NA intron (NM_001101676, intron 4 of 4) L3b|LINE|CR1 -223256 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 134.667-95 chr7 3793559 3793743 + 1.16667 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -336034 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 222.167-13 chr13 105702406 105702724 + 1.16667 NA Intergenic Intergenic -4265 NR_120418 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 392.334-2 chr4 65119404 65119919 + 1.16667 NA Intergenic L1MB3|LINE|L1 -115161 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 268.667-17 chrX 94696002 94696342 + 1.16667 NA Intergenic MLT2B1|LTR|ERVL 367054 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 188.5-19 chr15 59411598 59411774 + 1.16667 NA Intergenic AluSx1|SINE|Alu -26500 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 266.001-4 chr8 81058648 81058935 + 1.16667 NA intron (NM_018440, intron 2 of 8) AluJr|SINE|Alu 53277 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 304.167-8 chr6 64773213 64773730 + 1.16667 NA intron (NM_001292009, intron 22 of 43) L1PA15|LINE|L1 -527947 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 174.167-29 chr3 180185291 180185561 + 1.16667 NA Intergenic LTR37B|LTR|ERV1 -148489 NM_001349399 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 182.834 chr13 95572340 95572595 + 1.16667 NA intron (NM_001160100, intron 3 of 4) MIRb|SINE|MIR 19747 NM_006984 9071 Hs.534377 NM_006984 ENSG00000134873 CLDN10 CPETRL3|HELIX|OSP-L|OSPL claudin 10 protein-coding 144.333-18 chr10 120521468 120521687 + 1.16667 NA intron (NM_001030059, intron 5 of 6) intron (NM_001030059, intron 5 of 6) 64623 NR_134516 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 125-95 chr8 99511206 99511324 + 1.16667 NA exon (NM_152564, exon 29 of 62) exon (NM_152564, exon 29 of 62) 25465 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 289.334 chr10 121520647 121521110 + 1.16667 NA intron (NR_073009, intron 4 of 16) AluJb|SINE|Alu 10436 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 336.5-7 chr8 85414159 85414766 + 1.16667 NA Intergenic L1MA9|LINE|L1 -24397 NM_005181 761 Hs.82129 NM_005181 ENSG00000164879 CA3 CAIII|Car3 carbonic anhydrase 3 protein-coding 147.833-33 chr2 30173558 30173789 + 1.16667 NA Intergenic Intergenic -13761 NR_145719 109616960 NR_145719 ENSG00000207187 SNORA10B - small nucleolar RNA, H/ACA box 10B snoRNA 227.834-2 chr11 106958408 106958660 + 1.16667 NA intron (NM_001256424, intron 3 of 8) L3|LINE|CR1 59942 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 457.667 chr2 5357085 5357581 + 1.16667 NA Intergenic Intergenic 333785 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 303.834-2 chr4 14574256 14574649 + 1.16667 NA intron (NR_126435, intron 4 of 6) intron (NR_126435, intron 4 of 6) 313717 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 146.167-50 chr5 8965251 8965663 + 1.16667 NA Intergenic L1MB4|LINE|L1 88438 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 142.5-49 chr3 83449744 83449983 + 1.16667 NA Intergenic Intergenic 1419712 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 220-21 chr4 93161182 93161396 + 1.16667 NA intron (NM_001286838, intron 3 of 14) intron (NM_001286838, intron 3 of 14) -667464 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 345.667-4 chr14 51529833 51530312 + 1.16667 NA intron (NM_001042481, intron 1 of 14) MER63D|DNA|hAT-Blackjack 40944 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 175.833-45 chr8 131529932 131530216 + 1.16667 NA Intergenic L1MA7|LINE|L1 -374019 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 232.334-6 chr5 172592695 172592996 + 1.16667 NA Intergenic L2c|LINE|L2 -33831 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 295-2 chr2 62396408 62396703 + 1.16667 NA Intergenic L1PREC2|LINE|L1 109640 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 293.501-2 chr3 173167745 173168172 + 1.16667 NA Intergenic Intergenic -26723 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 126-102 chr9 109242429 109242553 + 1.16667 NA intron (NM_018424, intron 15 of 15) intron (NM_018424, intron 15 of 15) -75200 NM_014334 23732 Hs.347537 NM_014334 ENSG00000260230 FRRS1L C9orf4|CG-6|CG6|EIEE37 ferric chelate reductase 1 like protein-coding 171.667-78 chr7 36068161 36068391 + 1.16667 NA Intergenic Intergenic -27034 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 137.167-25 chr17 65091360 65091630 + 1.16667 NA Intergenic Intergenic -9317 NR_110801 100507002 Hs.729924 NR_110801 LOC100507002 - uncharacterized LOC100507002 ncRNA 187.334 chr2 8925014 8925362 + 1.16667 NA intron (NR_135605, intron 1 of 11) intron (NR_135605, intron 1 of 11) 78496 NR_135604 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 125-64 chr5 36637667 36638052 + 1.16667 NA intron (NM_004172, intron 3 of 9) intron (NM_004172, intron 3 of 9) 31253 NM_001166695 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 180.167-6 chr10 57751776 57752053 + 1.16667 NA Intergenic L1ME2|LINE|L1 -447355 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 180.334-2 chr14 57997901 57998165 + 1.16667 NA Intergenic Intergenic -131941 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 114.667-24 chr12 97549272 97549430 + 1.16667 NA intron (NR_152618, intron 8 of 10) intron (NR_152618, intron 8 of 10) -14461 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 180-26 chr2 199904572 199904841 + 1.16667 NA Intergenic L1MB8|LINE|L1 -6587 NM_153689 205327 Hs.154494 NM_153689 ENSG00000178074 C2orf69 - chromosome 2 open reading frame 69 protein-coding 191.167-12 chr2 24851732 24851920 + 1.16667 NA intron (NM_001320613, intron 3 of 21) LOR1b|LTR|ERV1 58401 NM_001199803 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 204.501-2 chr2 211244062 211244260 + 1.16667 NA Intergenic Intergenic 626590 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 160-18 chr11 129430352 129430517 + 1.16667 NA intron (NM_003658, intron 1 of 3) intron (NM_003658, intron 1 of 3) 54586 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 243.334-6 chr8 130218593 130218944 + 1.16667 NA intron (NM_001362925, intron 4 of 29) intron (NM_001362925, intron 4 of 29) 77765 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 242-16 chr5 31421967 31422275 + 1.16667 NA intron (NM_013235, intron 28 of 34) intron (NM_013235, intron 28 of 34) 109972 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 113.667-113 chr6 134628784 134628911 + 1.16667 NA Intergenic Intergenic -88842 NR_125856 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 214.834-7 chr8 16092858 16093178 + 1.16667 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 93254 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 212.333-13 chr14 75510847 75511123 + 1.16667 NA Intergenic L1MB7|LINE|L1 -11484 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 185.334-5 chr7 15625232 15625456 + 1.16667 NA intron (NM_005924, intron 2 of 2) intron (NM_005924, intron 2 of 2) -42603 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 169-18 chr15 62021483 62021849 + 1.16667 NA intron (NM_001018088, intron 8 of 81) intron (NM_001018088, intron 8 of 81) 38781 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 203.333-10 chr14 58016191 58016527 + 1.16667 NA intron (NM_001001872, intron 5 of 7) L1ME4a|LINE|L1 135854 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 263.667-4 chr11 79240561 79240974 + 1.16667 NA intron (NM_001098816, intron 2 of 33) intron (NM_001098816, intron 2 of 33) 161342 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 206.501-2 chr20 16640300 16640602 + 1.16667 NA Intergenic MER34A|LTR|ERV1 -67003 NM_024704 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 154-33 chr17 71129120 71129285 + 1.16667 NA intron (NR_104152, intron 3 of 3) intron (NR_104152, intron 3 of 3) 72977 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 120.333-85 chr4 42978209 42978398 + 1.16667 NA intron (NM_001080476, intron 2 of 3) L1MA8|LINE|L1 85037 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 203.334-3 chr2 865862 866151 + 1.16667 NA intron (NR_033880, intron 1 of 3) intron (NR_033880, intron 1 of 3) 2420 NR_033880 339822 Hs.651879 NR_033880 ENSG00000237667 LINC01115 - long intergenic non-protein coding RNA 1115 ncRNA 204.834-12 chr9 25722641 25722834 + 1.16667 NA Intergenic Intergenic -43879 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 161.167-56 chr8 92372872 92373037 + 1.16667 NA Intergenic Intergenic -269569 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 191.334-2 chr11 74045107 74045336 + 1.16667 NA intron (NM_001286577, intron 28 of 32) L1MB8|LINE|L1 -35984 NM_022803 7352 Hs.101337 NM_003356 ENSG00000175564 UCP3 SLC25A9 uncoupling protein 3 protein-coding 247-15 chr4 123880637 123881149 + 1.16667 NA intron (NR_027105, intron 4 of 5) intron (NR_027105, intron 4 of 5) 106629 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 258.167-18 chr8 115760259 115760666 + 1.16667 NA Intergenic Intergenic -91487 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 192.5-3 chr1 208551387 208551714 + 1.16667 NA Intergenic Intergenic -177138 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 167.167-35 chr19 34788355 34788605 + 1.16667 NA Intergenic L1MEg|LINE|L1 -15265 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 227.334-4 chr15 66997537 66997929 + 1.16667 NA intron (NR_135686, intron 2 of 5) L1M4|LINE|L1 -41218 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 232-28 chr7 6480613 6480952 + 1.16667 NA intron (NM_001100603, intron 1 of 3) intron (NM_001100603, intron 1 of 3) 3370 NM_001100603 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 271.5-21 chr6 119391806 119392234 + 1.16667 NA Intergenic AluSq2|SINE|Alu -42259 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 218.834-6 chr3 122725538 122725740 + 1.16667 NA intron (NM_017554, intron 15 of 16) L1MEg|LINE|L1 44800 NM_017554 54625 Hs.518203 NM_017554 ENSG00000173193 PARP14 ARTD8|BAL2|PARP-14|pART8 poly(ADP-ribose) polymerase family member 14 protein-coding 373.167 chr16 61548956 61549714 + 1.16667 NA Intergenic Intergenic 487103 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 120.167-68 chr6 45788303 45788579 + 1.16667 NA Intergenic Intergenic 149156 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 169.834 chr1 105014517 105014838 + 1.16667 NA Intergenic L1MCb|LINE|L1 604258 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 249.334-5 chr17 69823859 69824214 + 1.16667 NA intron (NR_109972, intron 3 of 4) L2|LINE|L2 -137671 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 139.834-6 chr8 63260678 63260842 + 1.16667 NA Intergenic MSTD|LTR|ERVL-MaLR 91757 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 236.667-2 chr1 119132614 119133014 + 1.16667 NA intron (NM_015836, intron 1 of 5) intron (NM_015836, intron 1 of 5) -7582 NR_125976 101929147 Hs.697821 NR_125974 ENSG00000231365 WARS2-AS1 - WARS2 antisense RNA 1 ncRNA 214-12 chr14 71129920 71130225 + 1.16667 NA Intergenic LTR38A1|LTR|ERV1 -190404 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 139.167-7 chr10 81615276 81615460 + 1.16667 NA Intergenic L1M2|LINE|L1 -259826 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 172.167 chr1 28061042 28061305 + 1.16667 NA intron (NM_001282562, intron 1 of 16) intron (NM_001282562, intron 1 of 16) 27437 NM_001990 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 181.834-7 chr5 79398928 79399135 + 1.16667 NA intron (NM_001277077, intron 3 of 5) L2c|LINE|L2 114805 NM_001277078 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 208.334-3 chr3 3478124 3478325 + 1.16667 NA Intergenic MER102c|DNA|hAT-Charlie -298507 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 119.333-19 chr11 102316900 102317099 + 1.16667 NA promoter-TSS (NM_001165) promoter-TSS (NM_001165) -485 NM_001165 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 292.667-10 chr2 208608879 208609224 + 1.16667 NA intron (NR_136588, intron 2 of 5) MLT1E1A|LTR|ERVL-MaLR 66409 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 226.5-18 chr2 48680474 48680773 + 1.16667 NA intron (NM_001198593, intron 10 of 10) intron (NM_001198593, intron 10 of 10) 62767 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 252.001 chr12 9769802 9770047 + 1.16667 NA Intergenic MER58A|DNA|hAT-Charlie -9023 NM_001781 969 Hs.208854 NM_001781 ENSG00000110848 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 114.667-50 chr2 61329917 61330020 + 1.16667 NA intron (NM_014709, intron 20 of 79) intron (NM_014709, intron 20 of 79) 87409 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 200-39 chr2 134327472 134327731 + 1.16667 NA intron (NM_001371457, intron 5 of 16) Tigger7|DNA|TcMar-Tigger 73529 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 268.334-2 chr1 160143266 160143527 + 1.16667 NA 3' UTR (NM_000702, exon 23 of 23) 3' UTR (NM_000702, exon 23 of 23) -8166 NM_144699 480 Hs.662219 NM_144699 ENSG00000132681 ATP1A4 ATP1A1|ATP1AL2 ATPase Na+/K+ transporting subunit alpha 4 protein-coding 230.167-22 chr8 101791136 101791354 + 1.16667 NA promoter-TSS (NM_032041) promoter-TSS (NM_032041) -276 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 157.167-3 chr1 48378902 48379370 + 1.16667 NA intron (NM_019073, intron 9 of 12) THE1C|LTR|ERVL-MaLR 93068 NM_019073 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 219.834-7 chr5 85681459 85681771 + 1.16667 NA Intergenic L1ME2|LINE|L1 -600829 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 379.667-3 chr2 126824741 126825204 + 1.16667 NA Intergenic Intergenic -73918 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 244-6 chr16 59510834 59511145 + 1.16667 NA Intergenic Intergenic 244202 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 176.334-6 chr2 73489645 73489838 + 1.16667 NA exon (NM_015120, exon 10 of 23) exon (NM_015120, exon 10 of 23) 32638 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 162.333-66 chr6 112067167 112067417 + 1.16667 NA intron (NR_125354, intron 5 of 6) intron (NR_125354, intron 5 of 6) 13124 NR_125353 8838 Hs.558428 NM_003880 ENSG00000112761 CCN6 LIBC|PPAC|PPD|WISP-3|WISP3 cellular communication network factor 6 protein-coding 296.834-5 chr8 89233263 89233825 + 1.16667 NA Intergenic MER4D0|LTR|ERV1 524167 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 222.667-31 chr6 42099632 42099824 + 1.16667 NA Intergenic Intergenic 42892 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 122.834 chr10 76123014 76123209 + 1.16667 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 340350 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 222.833-2 chr11 106858897 106859390 + 1.16667 NA intron (NM_001256424, intron 4 of 8) intron (NM_001256424, intron 4 of 8) 159333 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 220.334-10 chr8 27578015 27578331 + 1.16667 NA Intergenic L1ME3E|LINE|L1 32578 NR_106902 102465508 NR_106902 ENSG00000284280 MIR6843 hsa-mir-6843 microRNA 6843 ncRNA 274-8 chr5 170985553 170985887 + 1.16667 NA intron (NM_022897, intron 14 of 27) intron (NM_022897, intron 14 of 27) 123702 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 311-6 chr4 95211925 95212363 + 1.16667 NA intron (NM_003728, intron 10 of 15) intron (NM_003728, intron 10 of 15) 120653 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 249.334-2 chr1 152466778 152467001 + 1.16667 NA Intergenic L1MEg|LINE|L1 -43914 NM_178438 254910 Hs.516410 NM_178438 ENSG00000186207 LCE5A LEP18|SPRL5A late cornified envelope 5A protein-coding 394.001 chr15 64204324 64204775 + 1.16667 NA exon (NM_001329605, exon 9 of 13) exon (NM_001329605, exon 9 of 13) -41394 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 218.5-8 chr14 47928009 47928376 + 1.16667 NA Intergenic Intergenic -133178 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 347.834-3 chr4 45091444 45091754 + 1.16667 NA Intergenic L1PA15|LINE|L1 -364965 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 165.667-55 chr5 56707032 56707220 + 1.16667 NA Intergenic Intergenic 65745 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 167.334-6 chr6 157065535 157065716 + 1.16667 NA intron (NM_001363725, intron 2 of 17) intron (NM_001363725, intron 2 of 17) 29198 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 181.333-19 chr16 58236071 58236373 + 1.16667 NA Intergenic LTR33|LTR|ERVL -13714 NM_014157 29070 Hs.11614 NM_014157 ENSG00000103021 CCDC113 HSPC065 coiled-coil domain containing 113 protein-coding 198.667-6 chr10 20202705 20203042 + 1.16667 NA intron (NM_032812, intron 9 of 13) intron (NM_032812, intron 9 of 13) -349097 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 120.834-5 chr2 172290285 172290406 + 1.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR -136991 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 228-32 chr7 10067987 10068276 + 1.16667 NA Intergenic L1MC2|LINE|L1 433861 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 213.667-44 chr8 139334362 139334756 + 1.16667 NA Intergenic L1ME3A|LINE|L1 368564 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 227.5-26 chr4 135656054 135656677 + 1.16667 NA Intergenic L1M1|LINE|L1 231728 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 251-25 chr6 137409407 137409767 + 1.16667 NA Intergenic Intergenic 84807 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 373.167-4 chr4 88643921 88644561 + 1.16667 NA intron (NM_001318505, intron 3 of 8) L1ME1|LINE|L1 51761 NM_014606 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 356.333-3 chr22 25704515 25705350 + 1.16667 NA intron (NM_001362778, intron 14 of 19) intron (NM_001362778, intron 14 of 19) -37256 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 156.667-14 chr10 29602100 29602323 + 1.16667 NA TTS (NR_030634) TTS (NR_030634) 135 NR_030634 100126327 NR_030634 ENSG00000216035 MIR938 MIRN938|hsa-mir-938 microRNA 938 ncRNA 252.5-6 chr12 38776631 38777015 + 1.16667 NA intron (NM_153634, intron 6 of 19) Tigger3b|DNA|TcMar-Tigger 128768 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 259-7 chr18 421156 421443 + 1.16667 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 79402 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 228.001 chr7 11635747 11636020 + 1.16667 NA intron (NM_015204, intron 2 of 26) intron (NM_015204, intron 2 of 26) 196315 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 137.833-18 chr19 39793874 39794159 + 1.16667 NA Intergenic AluSx|SINE|Alu 17422 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 271.667-9 chr22 25917930 25918478 + 1.16667 NA intron (NM_001318245, intron 33 of 43) MIR3|SINE|MIR 176016 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 337-6 chr5 44371503 44372092 + 1.16667 NA intron (NM_004465, intron 1 of 2) MIRb|SINE|MIR -16935 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 271.334-3 chr9 101450916 101451316 + 1.16667 NA Intergenic Intergenic -15342 NM_000035 229 Hs.530274 NM_000035 ENSG00000136872 ALDOB ALDB|ALDO2 aldolase, fructose-bisphosphate B protein-coding 251.667-21 chr6 99051048 99051363 + 1.16667 NA Intergenic MLT2B1|LTR|ERVL -73404 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 281.5-4 chr2 180012040 180012361 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -4903 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 204.667-10 chr11 12548968 12549647 + 1.16667 NA Intergenic MLT1L|LTR|ERVL-MaLR -125114 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 194-52 chr7 27594920 27595227 + 1.16667 NA intron (NM_152740, intron 4 of 7) L1M5|LINE|L1 -20901 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 211.834-5 chr4 103105700 103105941 + 1.16667 NA TTS (NM_001286734) TTS (NM_001286734) -5986 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 290.834-7 chr5 24983675 24983988 + 1.16667 NA Intergenic MLT1I|LTR|ERVL-MaLR -143248 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 114.5-71 chr4 95949695 95949800 + 1.16667 NA Intergenic Intergenic 109654 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 174.167-14 chr14 51160228 51160520 + 1.16667 NA Intergenic MER65-int|LTR|ERV1 -64670 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 157.667-39 chr2 230815124 230815312 + 1.16667 NA intron (NM_001130850, intron 7 of 8) intron (NM_001130850, intron 7 of 8) -48967 NM_001287240 81618 Hs.111577 NM_030926 ENSG00000135916 ITM2C BRI3|BRICD2C|E25|E25C|ITM3 integral membrane protein 2C protein-coding 214.834-2 chr11 74788979 74789208 + 1.16667 NA intron (NM_001098638, intron 1 of 5) intron (NM_001098638, intron 1 of 5) 40244 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 232.334-5 chr5 110798424 110798664 + 1.16667 NA Intergenic L1PA15-16|LINE|L1 59537 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 335-4 chr3 73047370 73048008 + 1.16667 NA intron (NM_001318026, intron 3 of 8) intron (NM_001318026, intron 3 of 8) -13970 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 198.667-17 chr14 33326938 33327218 + 1.16667 NA intron (NM_173159, intron 3 of 11) Kanga11a|DNA|TcMar-Tc2 -381859 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 202.5 chr1 66554398 66554749 + 1.16667 NA intron (NM_001350218, intron 1 of 22) Tigger4b|DNA|TcMar-Tigger 20420 NM_001350217 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 248.001 chr2 104045484 104045733 + 1.16667 NA Intergenic Intergenic 362724 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 194.334-5 chr4 62242575 62242760 + 1.16667 NA Intergenic L2|LINE|L2 -80902 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 304.167-10 chr8 55110134 55110464 + 1.16667 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 8271 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 303.001 chr1 67020287 67020584 + 1.16667 NA exon (NM_015139, exon 10 of 12) exon (NM_015139, exon 10 of 12) 33713 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 146.667-76 chr6 47223815 47224014 + 1.16667 NA Intergenic AluSz|SINE|Alu 85991 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 308.667-5 chr4 95234869 95235323 + 1.16667 NA intron (NM_003728, intron 7 of 15) intron (NM_003728, intron 7 of 15) 143605 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 252.333-18 chr4 96894556 96895043 + 1.16667 NA Intergenic Intergenic -472127 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 239.167-9 chr2 117715295 117715609 + 1.16667 NA Intergenic LTR16A2|LTR|ERVL -99239 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 163.167-22 chr2 103542756 103542906 + 1.16667 NA Intergenic Intergenic -558402 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 268.334-5 chr2 158606712 158607001 + 1.16667 NA intron (NM_001005476, intron 4 of 20) intron (NM_001005476, intron 4 of 20) 128146 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 191.5-47 chr6 109559741 109559997 + 1.16667 NA intron (NM_001145128, intron 24 of 40) MLT1D|LTR|ERVL-MaLR -76632 NM_014797 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 197-17 chr15 71839350 71839682 + 1.16667 NA intron (NM_006901, intron 39 of 41) AluJr|SINE|Alu 28962 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 149.834-4 chr12 73073719 73073853 + 1.16667 NA Intergenic L1MC5|LINE|L1 -85404 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 202.333-26 chr20 39151161 39151556 + 1.16667 NA Intergenic Intergenic 73390 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 297.667-9 chr8 127641720 127642145 + 1.16667 NA Intergenic Intergenic 92035 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 198.667-28 chr2 27708974 27709282 + 1.16667 NA intron (NR_135200, intron 1 of 1) intron (NR_135200, intron 1 of 1) 6604 NR_135200 100129995 Hs.515878 NR_135200 ENSG00000205334 LINC01460 - long intergenic non-protein coding RNA 1460 ncRNA 179.833-20 chr20 19269804 19270276 + 1.16667 NA intron (NR_024564, intron 2 of 7) intron (NR_024564, intron 2 of 7) 14556 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 232.834 chr11 105442486 105442766 + 1.16667 NA Intergenic Intergenic -167447 NM_001077244 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 285.334-7 chr7 109123037 109123492 + 1.16667 NA Intergenic Intergenic -238677 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 156.167-10 chr10 123700052 123700215 + 1.16667 NA Intergenic L1ME1|LINE|L1 33778 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 270.501-2 chr3 24926912 24927296 + 1.16667 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 97781 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 287.667-12 chr8 52630586 52631345 + 1.16667 NA intron (NM_001083617, intron 20 of 23) LTR10B2|LTR|ERV1 -65535 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 170.834 chr1 90962076 90962296 + 1.16667 NA intron (NM_201269, intron 2 of 5) L1MEg|LINE|L1 59322 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 202.167-41 chr9 37700469 37700985 + 1.16667 NA intron (NM_001371225, intron 2 of 15) intron (NM_001371225, intron 2 of 15) 32718 NM_001371223 305.667-11 chr4 10654045 10654416 + 1.16667 NA intron (NM_052964, intron 2 of 18) L1ME3E|LINE|L1 30538 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 140-71 chr6 128902371 128902520 + 1.16667 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 19304 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 345.167 chr14 59510552 59510934 + 1.16667 NA exon (NM_001164399, exon 19 of 20) exon (NM_001164399, exon 19 of 20) 26226 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 183.167-57 chr8 35410106 35410291 + 1.16667 NA intron (NM_080872, intron 1 of 16) L2a|LINE|L2 -134194 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 172.5-44 chr4 99818618 99818905 + 1.16667 NA intron (NM_001306151, intron 1 of 9) intron (NM_001306151, intron 1 of 9) 1934 NM_001306151 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 227.167-12 chr18 6459880 6460182 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger -44772 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 282.167-19 chr9 68503464 68503880 + 1.16667 NA intron (NM_021965, intron 10 of 10) intron (NM_021965, intron 10 of 10) 37195 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 307.334 chr14 27990456 27990887 + 1.16667 NA Intergenic L2c|LINE|L2 -317450 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 370.667-2 chr5 44991408 44991957 + 1.16667 NA Intergenic Intergenic 182735 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 207.834-5 chr18 1223120 1223360 + 1.16667 NA Intergenic L4_A_Mam|LINE|RTE-X 136389 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 132.5-52 chr2 204070650 204070785 + 1.16667 NA Intergenic Intergenic 133969 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 142-92 chr8 129371217 129371362 + 1.16667 NA intron (NR_130918, intron 1 of 2) intron (NR_130918, intron 1 of 2) 112853 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 127.834-5 chr4 20514687 20514847 + 1.16667 NA intron (NM_001289135, intron 11 of 35) (TTA)n|Simple_repeat|Simple_repeat -13508 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 185.5-17 chr18 68651705 68651961 + 1.16667 NA Intergenic Intergenic 63275 NM_001350517 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 125.833-85 chr7 130448478 130448732 + 1.16667 NA Intergenic L1MCc|LINE|L1 -7395 NM_001257159 95681 Hs.368315 NM_018718 ENSG00000106477 CEP41 JBTS15|TSGA14 centrosomal protein 41 protein-coding 167.334 chr17 14925259 14925510 + 1.16667 NA Intergenic L2a|LINE|L2 -89421 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 133.833-74 chr7 122148763 122148990 + 1.16667 NA Intergenic Intergenic -4627 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 248.667-24 chr8 132060105 132060494 + 1.16667 NA promoter-TSS (NM_001080399) promoter-TSS (NM_001080399) -917 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 177.334-3 chr18 2447722 2447973 + 1.16667 NA Intergenic MER39B|LTR|ERV1 123658 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 335.667-9 chr8 131376446 131377550 + 1.16667 NA Intergenic L1MEd|LINE|L1 -336089 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 124.5-45 chr3 32349050 32349238 + 1.16667 NA intron (NM_001320308, intron 1 of 2) HAL1|LINE|L1 -42709 NM_181472 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 151.667-86 chr8 83136287 83136477 + 1.16667 NA Intergenic MLT1I|LTR|ERVL-MaLR 224278 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 428.334 chr13 24757124 24757519 + 1.16667 NA Intergenic AluSx|SINE|Alu -6848 NM_001184993 56163 Hs.97464 NM_031277 ENSG00000132972 RNF17 Mmip-2|SPATA23|TDRD4 ring finger protein 17 protein-coding 220.834-5 chr7 84168578 84168847 + 1.16667 NA intron (NM_006080, intron 1 of 16) intron (NM_006080, intron 1 of 16) 26077 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 202.5-11 chr17 63126112 63126413 + 1.16667 NA intron (NM_025185, intron 4 of 25) L2a|LINE|L2 160027 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 280-15 chr6 107965262 107965641 + 1.16667 NA Intergenic Intergenic -7243 NM_007214 11231 Hs.26904 NM_007214 ENSG00000025796 SEC63 DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L SEC63 homolog, protein translocation regulator protein-coding 165.333-70 chr8 86682109 86682360 + 1.16667 NA intron (NM_019098, intron 3 of 17) intron (NM_019098, intron 3 of 17) 61441 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 170-21 chr15 67212669 67212871 + 1.16667 NA intron (NM_001271885, intron 5 of 9) intron (NM_001271885, intron 5 of 9) 41891 NM_024666 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 298.667-6 chr2 37003458 37003868 + 1.16667 NA exon (NM_019024, exon 31 of 36) exon (NM_019024, exon 31 of 36) -37127 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 139.334-8 chr4 89218854 89219000 + 1.16667 NA Intergenic Intergenic 88873 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 159.667-91 chr8 28741470 28741653 + 1.16667 NA intron (NM_001440, intron 5 of 6) AluJo|SINE|Alu 40060 NM_001440 2137 Hs.491354 NM_001440 ENSG00000012232 EXTL3 BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR exostosin like glycosyltransferase 3 protein-coding 196-42 chr3 41392131 41392361 + 1.16667 NA intron (NM_001322500, intron 35 of 35) intron (NM_001322500, intron 35 of 35) 192741 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 299.5-8 chr21 29773481 29773853 + 1.16667 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 25492 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 201.667-36 chr6 51364900 51365095 + 1.16667 NA Intergenic LTR33|LTR|ERVL -256873 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 126.167-81 chr7 7295881 7296079 + 1.16667 NA Intergenic Intergenic 40826 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 331.5-6 chr6 121061813 121062247 + 1.16667 NA Intergenic L1PB1|LINE|L1 272450 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 156.167-62 chr8 140393928 140394086 + 1.16667 NA intron (NM_001160372, intron 7 of 22) intron (NM_001160372, intron 7 of 22) 63737 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 287.5-8 chr17 75286901 75287279 + 1.16667 NA intron (NM_001126122, intron 1 of 6) L2a|LINE|L2 2343 NM_001126121 60386 Hs.514470 NM_021734 ENSG00000125454 SLC25A19 DNC|MCPHA|MUP1|THMD3|THMD4|TPC solute carrier family 25 member 19 protein-coding 169.334-3 chr18 63026711 63026976 + 1.16667 NA Intergenic Intergenic 292537 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 334.5-4 chr14 46451443 46452189 + 1.16667 NA intron (NR_102701, intron 5 of 5) intron (NR_102701, intron 5 of 5) -19543 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 253-16 chr4 73844197 73844706 + 1.16667 NA Intergenic Intergenic 7773 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 182.5-38 chr7 32485334 32485555 + 1.16667 NA non-coding (NR_024466, exon 5 of 5) non-coding (NR_024466, exon 5 of 5) 4936 NM_012322 23658 Hs.424908 NM_012322 ENSG00000106355 LSM5 YER146W LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 206.5-14 chr2 51439238 51439572 + 1.16667 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 406804 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 209.167-6 chr11 132677466 132677824 + 1.16667 NA intron (NM_001319104, intron 1 of 6) L1MC1|LINE|L1 265992 NM_001319106 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 304.667-18 chr8 127895456 127895730 + 1.16667 NA intron (NR_003367, intron 2 of 8) MIR|SINE|MIR 53130 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 186.167-31 chr4 62630356 62630617 + 1.16667 NA Intergenic Intergenic -468721 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 177.5-6 chr1 105760667 105761055 + 1.16667 NA Intergenic Intergenic -141926 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 249.667-24 chr2 223113575 223113813 + 1.16667 NA Intergenic Intergenic 61764 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 194.5-31 chr4 171546093 171546606 + 1.16667 NA Intergenic Intergenic 92414 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 207.834-4 chr16 79207935 79208147 + 1.16667 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 392696 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 205.834-8 chr8 138999454 138999935 + 1.16667 NA Intergenic Intergenic -85653 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 251.333-6 chr12 573894 574276 + 1.16667 NA intron (NM_016533, intron 1 of 3) AluSq|SINE|Alu 12401 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 232.667-30 chr8 100593998 100594252 + 1.16667 NA intron (NM_152628, intron 10 of 13) AluSz|SINE|Alu 24280 NM_001363720 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 233.167-11 chr15 64177062 64177421 + 1.16667 NA intron (NM_022048, intron 11 of 11) intron (NM_022048, intron 11 of 11) -14086 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 213.167-34 chr8 111859371 111859582 + 1.16667 NA Intergenic L1MA6|LINE|L1 482837 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 204.834-6 chr5 75800606 75800848 + 1.16667 NA Intergenic LTR104_Mam|LTR|Gypsy -83290 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 260.834-4 chr4 178072611 178072938 + 1.16667 NA Intergenic Intergenic -164838 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 171-56 chr7 25736920 25737146 + 1.16667 NA intron (NR_157808, intron 1 of 4) L1ME4a|LINE|L1 13999 NR_157814 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 177.5-2 chr1 42555291 42555540 + 1.16667 NA intron (NM_001355227, intron 9 of 18) L2c|LINE|L2 22395 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 213.834-4 chr2 194004696 194004988 + 1.16667 NA Intergenic Intergenic -339427 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 316.667-10 chr6 125212132 125212636 + 1.16667 NA intron (NM_001318907, intron 1 of 4) intron (NM_001318907, intron 1 of 4) 8673 NM_001318907 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 212.167-26 chr8 107388594 107389079 + 1.16667 NA intron (NM_001199859, intron 1 of 8) MamGypsy2-I|LTR|Gypsy -52321 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 169.167-41 chr8 4924836 4925087 + 1.16667 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 69953 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 172.167-43 chr5 172575718 172575971 + 1.16667 NA Intergenic MIRb|SINE|MIR -16830 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 143.667-79 chr4 55494662 55494901 + 1.16667 NA intron (NM_004898, intron 2 of 22) MLT1D|LTR|ERVL-MaLR 51151 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 169.667-76 chr8 133774609 133774765 + 1.16667 NA TTS (NR_125422) TTS (NR_125422) 2665 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 276.5-5 chr15 61675657 61676042 + 1.16667 NA Intergenic Intergenic -54069 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 215.167-30 chr8 98977711 98977948 + 1.16667 NA Intergenic MSTD-int|LTR|ERVL-MaLR 33387 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 272.167-10 chr14 56206727 56207093 + 1.16667 NA intron (NM_021255, intron 2 of 5) X2_LINE|LINE|CR1 88499 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 265.834 chr4 31311639 31312005 + 1.16667 NA Intergenic Intergenic 140678 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 200.834-6 chr5 170137346 170137542 + 1.16667 NA Intergenic Cheshire|DNA|hAT-Charlie 31547 NM_012188 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 147.667-56 chr5 52413412 52413654 + 1.16667 NA Intergenic Intergenic -374383 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 266.834-5 chr3 101691808 101692137 + 1.16667 NA Intergenic LTR5_Hs|LTR|ERVK -5254 NM_000986 6152 Hs.477028 NM_000986 ENSG00000114391 RPL24 HEL-S-310|L24 ribosomal protein L24 protein-coding 120.834-6 chr7 81315908 81316011 + 1.16667 NA Intergenic L1ME4c|LINE|L1 245860 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 154.833-19 chr15 60020937 60021197 + 1.16667 NA Intergenic MLT1K|LTR|ERVL-MaLR 16756 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 140.333-37 chr2 96131200 96131407 + 1.16667 NA intron (NM_001002036, intron 6 of 8) intron (NM_001002036, intron 6 of 8) 7133 NM_001002036 431705 Hs.447993 NM_001002036 ENSG00000188886 ASTL SAS1B astacin like metalloendopeptidase protein-coding 123.333-103 chr7 79319509 79319756 + 1.16667 NA intron (NM_001301128, intron 1 of 20) MLT1J|LTR|ERVL-MaLR -133325 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 193.5-29 chr2 147112439 147112738 + 1.16667 NA Intergenic L1ME3|LINE|L1 525531 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 169.667-11 chr11 4788363 4788683 + 1.16667 NA Intergenic Intergenic 15857 NM_001005177 119695 Hs.553563 NM_001005177 ENSG00000279270 OR52R1 OR11-22 olfactory receptor family 52 subfamily R member 1 (gene/pseudogene) protein-coding 237.167-15 chr3 33056540 33057050 + 1.16667 NA intron (NM_001135602, intron 3 of 12) L1MC4|LINE|L1 40037 NM_001079811 2720 Hs.443031 NM_000404 ENSG00000170266 GLB1 EBP|ELNR1|MPS4B galactosidase beta 1 protein-coding 116.833-33 chr20 51933098 51933272 + 1.16667 NA Intergenic Intergenic -70272 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 203.5-9 chr11 66644506 66644949 + 1.16667 NA intron (NM_002896, intron 3 of 3) intron (NM_002896, intron 3 of 3) 6024 NM_001198844 5936 Hs.523822 NM_002896 ENSG00000173933 RBM4 LARK|RBM4A|ZCCHC21|ZCRB3A RNA binding motif protein 4 protein-coding 319.334-2 chr2 101865899 101866370 + 1.16667 NA intron (NM_004834, intron 16 of 29) intron (NM_004834, intron 16 of 29) -117331 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 138.5-82 chr8 123428501 123428636 + 1.16667 NA intron (NM_018024, intron 2 of 5) intron (NM_018024, intron 2 of 5) 11794 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 151.333-85 chr8 73432641 73432896 + 1.16667 NA intron (NM_001164383, intron 8 of 9) intron (NM_001164383, intron 8 of 9) 12694 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 182.5-8 chr12 10275888 10276246 + 1.16667 NA intron (NM_001351060, intron 2 of 8) L1ME3B|LINE|L1 -28379 NM_001114396 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 173.5-27 chr18 5740479 5740677 + 1.16667 NA Intergenic Intergenic -8241 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 146.667-77 chr6 71963053 71963445 + 1.16667 NA intron (NM_001350412, intron 1 of 2) MIRb|SINE|MIR 76546 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 193-8 chr11 9093104 9093337 + 1.16667 NA Intergenic Intergenic -1143 NR_027713 283102 Hs.689472 NR_027713 ENSG00000213538 KRT8P41 - keratin 8 pseudogene 41 pseudo 253.167-8 chr4 45415751 45416051 + 1.16667 NA Intergenic ERVL-B4-int|LTR|ERVL -689267 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 196.5-9 chr11 26310552 26310800 + 1.16667 NA intron (NM_001313726, intron 2 of 27) intron (NM_001313726, intron 2 of 27) -21454 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 194.167-39 chr8 73342571 73342835 + 1.16667 NA intron (NR_125388, intron 2 of 5) L1ME3|LINE|L1 13758 NR_125388 101926926 Hs.640090 NR_125388 ENSG00000250295 RDH10-AS1 - RDH10 antisense RNA 1 ncRNA 183.834-11 chr9 21345767 21346004 + 1.16667 NA Intergenic L1PA7|LINE|L1 5002 NM_021002 3443 Hs.533470 NM_021002 ENSG00000120235 IFNA6 IFN-alphaK interferon alpha 6 protein-coding 117.167-97 chr8 139581705 139581813 + 1.16667 NA Intergenic Intergenic 121364 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 203.667-17 chr2 133427105 133427393 + 1.16667 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 141214 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 216.667-9 chr12 57861977 57862500 + 1.16667 NA Intergenic Intergenic -15509 NM_005730 10106 Hs.524530 NM_005730 ENSG00000175215 CTDSP2 OS4|PSR2|SCP2 CTD small phosphatase 2 protein-coding 183.834-7 chr5 115353308 115353516 + 1.16667 NA Intergenic Intergenic -56758 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 195-46 chr8 83253913 83254115 + 1.16667 NA Intergenic L1M4|LINE|L1 -149744 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 154.5-58 chr5 140088091 140088284 + 1.16667 NA Intergenic Intergenic 19825 NR_102739 100505636 Hs.438871 NR_102739 ENSG00000245146 MALINC1 LINC01024|MA-linc1 mitosis associated long intergenic non-coding RNA 1 ncRNA 172.5-27 chr19 30369904 30370155 + 1.16667 NA Intergenic Intergenic -2355 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 227.167-5 chr10 76966552 76966770 + 1.16667 NA intron (NM_001271519, intron 20 of 28) intron (NM_001271519, intron 20 of 28) 78617 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 217.001 chr9 26392841 26393091 + 1.16667 NA Intergenic L1P4a|LINE|L1 326291 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 180.5-52 chr9 116862028 116862193 + 1.16667 NA intron (NM_014010, intron 10 of 21) intron (NM_014010, intron 10 of 21) 174805 NM_001099679 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|LGMDR8|TATIP tripartite motif containing 32 protein-coding 244.5-7 chr14 45274064 45274563 + 1.16667 NA Intergenic L1MC4|LINE|L1 -21111 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 282.667-15 chr6 133047145 133047609 + 1.16667 NA Intergenic Intergenic -40703 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 144.167-76 chr8 129756357 129756651 + 1.16667 NA intron (NM_031415, intron 6 of 13) L1MA2|LINE|L1 30120 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 159-25 chr15 55729910 55730069 + 1.16667 NA intron (NM_173814, intron 2 of 19) intron (NM_173814, intron 2 of 19) 13163 NM_173814 283659 Hs.130957 NM_173814 ENSG00000166450 PRTG IGDCC5 protogenin protein-coding 188-20 chr12 123229400 123229654 + 1.16667 NA intron (NR_103517, intron 2 of 23) intron (NR_103517, intron 2 of 23) 3614 NM_022782 10198 Hs.577404 NM_022782 ENSG00000051825 MPHOSPH9 MPP-9|MPP9 M-phase phosphoprotein 9 protein-coding 248.834-4 chr14 49764005 49764328 + 1.16667 NA Intergenic L1MC1|LINE|L1 -3987 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 228.167-15 chr3 111155347 111155605 + 1.16667 NA intron (NM_001243288, intron 7 of 8) intron (NM_001243288, intron 7 of 8) 83660 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 200-44 chr22 24309265 24309626 + 1.16667 NA intron (NM_015330, intron 3 of 16) AluSg|SINE|Alu -32663 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 197-24 chr2 120846791 120846970 + 1.16667 NA intron (NM_005270, intron 2 of 13) intron (NM_005270, intron 2 of 13) 54599 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 248.5-9 chr3 42328355 42328713 + 1.16667 NA Intergenic MLT1C|LTR|ERVL-MaLR -62349 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 176.167-44 chr7 111202917 111203097 + 1.16667 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 111880 NM_018334 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 159.667-4 chr1 77051720 77051971 + 1.16667 NA intron (NM_030965, intron 4 of 4) intron (NM_030965, intron 4 of 4) -8298 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 322.5-7 chr5 165663745 165664289 + 1.16667 NA Intergenic Intergenic 1193738 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 291.334-8 chr6 125772094 125772566 + 1.16667 NA Intergenic AluYe5|SINE|Alu -8785 NM_001199620 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 214.5-36 chr6 111547048 111547269 + 1.16667 NA intron (NR_034109, intron 1 of 1) AluSq2|SINE|Alu 20121 NM_001164283 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 233.334-9 chr9 87377334 87378073 + 1.16667 NA Intergenic Intergenic -119525 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 271.667-15 chr5 61176021 61176341 + 1.16667 NA intron (NR_109908, intron 1 of 3) intron (NR_109908, intron 1 of 3) -13713 NM_001048249 643155 Hs.508479 NM_001048249 ENSG00000188725 SMIM15 C5orf43 small integral membrane protein 15 protein-coding 135.333-83 chr8 90133895 90134147 + 1.16667 NA Intergenic Intergenic -51142 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 237.167-4 chr11 39495657 39496285 + 1.16667 NA Intergenic L2a|LINE|L2 797159 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 238.5-25 chr4 156536783 156537137 + 1.16667 NA Intergenic Intergenic 434839 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 150-19 chr14 39040965 39041153 + 1.16667 NA intron (NM_006364, intron 17 of 19) intron (NM_006364, intron 17 of 19) -62081 NR_146545 105370458 NR_146545 ENSG00000258651 SEC23A-AS1 - SEC23A antisense RNA 1 ncRNA 154-21 chr14 41560993 41561201 + 1.16667 NA Intergenic Intergenic -45759 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 207.333-43 chr6 38744385 38744661 + 1.16667 NA intron (NM_001371, intron 7 of 91) L1ME3G|LINE|L1 29212 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 261.834-2 chr4 86643163 86643517 + 1.16667 NA intron (NM_080685, intron 2 of 47) intron (NM_080685, intron 2 of 47) 49025 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 327.5 chr18 30268847 30269166 + 1.16667 NA Intergenic L1ME1|LINE|L1 -29904 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 153-4 chr1 118714347 118714596 + 1.16667 NA Intergenic L1MA4|LINE|L1 273872 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 197.667-3 chr1 20296863 20297210 + 1.16667 NA intron (NM_001039500, intron 1 of 21) L2a|LINE|L2 6161 NM_001039500 127731 Hs.205178 NM_144623 ENSG00000158816 VWA5B1 - von Willebrand factor A domain containing 5B1 protein-coding 278.167-6 chr2 162190550 162190910 + 1.16667 NA intron (NM_004460, intron 17 of 25) intron (NM_004460, intron 17 of 25) -38483 NM_002054 2641 Hs.516494 NM_002054 ENSG00000115263 GCG GLP-1|GLP1|GLP2|GRPP glucagon protein-coding 190.5-2 chr1 51903744 51904014 + 1.16667 NA Intergenic MIR|SINE|MIR -24942 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 168.333-21 chr16 62884252 62884517 + 1.16667 NA Intergenic Intergenic -847946 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 208.001 chr20 896108 896288 + 1.16667 NA intron (NM_015985, intron 1 of 8) L2a|LINE|L2 20136 NM_001322809 51378 Hs.278973 NM_015985 ENSG00000101280 ANGPT4 ANG3|ANG4 angiopoietin 4 protein-coding 270.667 chr10 67540598 67540991 + 1.16667 NA intron (NM_001127384, intron 3 of 17) intron (NM_001127384, intron 3 of 17) 124866 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 157.834-6 chr5 65241443 65241640 + 1.16667 NA intron (NR_135689, intron 16 of 25) intron (NR_135689, intron 16 of 25) 240379 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 203-18 chr2 18141672 18141901 + 1.16667 NA Intergenic L1PA6|LINE|L1 263119 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 223.5-11 chr16 48474903 48475235 + 1.16667 NA Intergenic AluSz|SINE|Alu -89656 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 175.834-7 chr5 10829820 10830083 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -68717 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 179.167-42 chr6 146902027 146902246 + 1.16667 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -98312 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 191-26 chr2 12200955 12201138 + 1.16667 NA intron (NR_110196, intron 3 of 5) (A)n|Simple_repeat|Simple_repeat 1916 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 245.667-20 chr2 174154899 174155137 + 1.16667 NA intron (NM_001011708, intron 3 of 9) L2c|LINE|L2 93514 NM_001328688 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 162.834-3 chr4 188959316 188959491 + 1.16667 NA Intergenic Intergenic 182746 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 229.167-20 chr18 55549560 55549880 + 1.16667 NA intron (NM_001348217, intron 2 of 18) Tigger3b|DNA|TcMar-Tigger 36399 NM_001348217 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 132-48 chr20 54675556 54675762 + 1.16667 NA Intergenic Intergenic 200066 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 355.167-3 chr22 27900622 27901135 + 1.16667 NA intron (NM_001284278, intron 3 of 11) intron (NM_001284278, intron 3 of 11) 18336 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 143.334 chr13 97924010 97924188 + 1.16667 NA Intergenic MIR3|SINE|MIR -29576 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 125.334 chr12 1718014 1718186 + 1.16667 NA intron (NM_024551, intron 1 of 7).2 intron (NM_024551, intron 1 of 7).2 27030 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 131.334-5 chr3 187089128 187089282 + 1.16667 NA Intergenic L1MA7|LINE|L1 50291 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 143.834 chr12 40962933 40963118 + 1.16667 NA intron (NM_001843, intron 15 of 23) intron (NM_001843, intron 15 of 23) 54668 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 137.5-84 chr5 126038859 126039046 + 1.16667 NA Intergenic Intergenic -140625 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 139.333-5 chr10 20935181 20935393 + 1.16667 NA intron (NM_001173484, intron 4 of 6) intron (NM_001173484, intron 4 of 6) -37685 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 125.667-84 chr4 30336080 30336329 + 1.16667 NA Intergenic MER21B|LTR|ERVL -384165 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 243.333-7 chr14 64303323 64303691 + 1.16667 NA 5' UTR (NM_001291712, exon 3 of 14) 5' UTR (NM_001291712, exon 3 of 14) -9097 NM_001437 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 248-20 chr7 70252099 70252579 + 1.16667 NA intron (NM_015570, intron 4 of 18) L1M3|LINE|L1 653864 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 298.333-2 chr11 26654517 26654925 + 1.16667 NA intron (NM_031418, intron 24 of 26) L1MEg2|LINE|L1 67339 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 266.834-2 chr12 1129160 1129464 + 1.16667 NA intron (NR_027948, intron 6 of 19) (AAC)n|Simple_repeat|Simple_repeat 101564 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 218.001-2 chr18 29528994 29529191 + 1.16667 NA Intergenic LTR88a|LTR|Gypsy? -769818 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 145.334-6 chr22 40180248 40180678 + 1.16667 NA intron (NM_015088, intron 1 of 20) intron (NM_015088, intron 1 of 20) 2538 NM_001162501 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 150.334-6 chr4 179340977 179341176 + 1.16667 NA Intergenic L1MB1|LINE|L1 -1433140 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 260.667-18 chr4 92494065 92494392 + 1.16667 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 189829 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 223.333-2 chr10 57328614 57329025 + 1.16667 NA Intergenic Tigger2a|DNA|TcMar-Tigger -24260 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 156.667-69 chr5 44380005 44380167 + 1.16667 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -8646 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 172.5-39 chr3 117488988 117489336 + 1.16667 NA Intergenic Intergenic 201763 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 201.834 chr11 101865555 101866135 + 1.16667 NA Intergenic AluSx1|SINE|Alu -49165 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 239.834-4 chr5 122828651 122828953 + 1.16667 NA intron (NM_003100, intron 14 of 14) intron (NM_003100, intron 14 of 14) -16647 NR_146145 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 196.5-34 chr7 6218251 6218484 + 1.16667 NA intron (NM_001367581, intron 1 of 13) MLT1D|LTR|ERVL-MaLR -46230 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 180.667-6 chr10 37132262 37132741 + 1.16667 NA intron (NM_052997, intron 4 of 35) intron (NM_052997, intron 4 of 35) 6644 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 225 chr1 77294225 77294482 + 1.16667 NA intron (NM_012093, intron 3 of 13) FLAM_C|SINE|Alu 11266 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 323-4 chr4 166682036 166682611 + 1.16667 NA Intergenic Intergenic 552103 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 401.168 chr4 62703531 62703987 + 1.16667 NA Intergenic L1PA8|LINE|L1 -541994 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 315.167-6 chr15 56600267 56600914 + 1.16667 NA Intergenic L1M4|LINE|L1 133496 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 397.167-4 chr20 58535730 58536242 + 1.16667 NA intron (NR_034147, intron 5 of 6) AluSx1|SINE|Alu -20587 NM_153360 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 121.833-80 chrX 63253846 63254036 + 1.16667 NA Intergenic Intergenic 97391 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 261.834-4 chr5 117862679 117862986 + 1.16667 NA intron (NR_104997, intron 1 of 2) L1MC5a|LINE|L1 132471 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 196.5-18 chr18 77520212 77520452 + 1.16667 NA Intergenic Intergenic 270484 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 214.333-7 chr10 44693998 44694339 + 1.16667 NA Intergenic L1MA5A|LINE|L1 -217148 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 133.667-7 chr1 115844156 115844519 + 1.16667 NA Intergenic Intergenic -3211 NM_005599 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 258.167-12 chr3 186940857 186941169 + 1.16667 NA intron (NM_173216, intron 1 of 7) intron (NM_173216, intron 1 of 7) 10487 NM_173216 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 290.834-5 chr17 58844424 58844722 + 1.16667 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 88704 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 267.501-2 chr11 96961031 96961310 + 1.16667 NA Intergenic Intergenic 452745 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 189.667-40 chr5 127746697 127746886 + 1.16667 NA intron (NM_001317938, intron 2 of 6) intron (NM_001317938, intron 2 of 6) 43402 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 299.834 chr6 83101683 83102155 + 1.16667 NA intron (NM_015018, intron 4 of 38) L1MA9|LINE|L1 34253 NM_001199942 23033 Hs.520246 NM_015018 ENSG00000083097 DOP1A DOP1|DOPEY1|KIAA1117|dJ202D23.2 DOP1 leucine zipper like protein A protein-coding 180.167-15 chr14 47046757 47047194 + 1.16667 NA intron (NM_001113498, intron 7 of 16) intron (NM_001113498, intron 7 of 16) 296271 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 267.667-8 chr16 3406306 3406659 + 1.16667 NA TTS (NM_001347870) TTS (NM_001347870) 5267 NM_001347869 7727 Hs.155204 NM_003450 ENSG00000103343 ZNF174 ZSCAN8 zinc finger protein 174 protein-coding 228.167-24 chr7 111820701 111820999 + 1.16667 NA non-coding (NR_103806, exon 2 of 2) non-coding (NR_103806, exon 2 of 2) 12345 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 295.667-5 chr20 47923968 47924488 + 1.16667 NA Intergenic MIR|SINE|MIR -58998 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 161.834-6 chr8 122545907 122546073 + 1.16667 NA intron (NR_131202, intron 2 of 3) MLT1A|LTR|ERVL-MaLR 22654 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 214-52 chr9 99474733 99474950 + 1.16667 NA Intergenic Intergenic -99584 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 403.5 chr12 15540512 15541045 + 1.16667 NA intron (NM_030667, intron 12 of 26) intron (NM_030667, intron 12 of 26) -5833 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 262.167-15 chr3 95795351 95795891 + 1.16667 NA Intergenic LTR68|LTR|ERV1 -112428 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 324.501-2 chr5 125720215 125720521 + 1.16667 NA Intergenic Intergenic 227107 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 189.5-20 chr14 86461735 86461939 + 1.16667 NA Intergenic Intergenic -443941 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 305.834 chr10 94547195 94547673 + 1.16667 NA intron (NM_001289075, intron 2 of 20) intron (NM_001289075, intron 2 of 20) 1646 NM_001289073 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 152.667-16 chr11 69238236 69238427 + 1.16667 NA Intergenic L1MEc|LINE|L1 -55824 NM_138768 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 159.667-53 chr2 183926138 183926294 + 1.16667 NA Intergenic Intergenic -452759 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 194.5 chr1 90181484 90182168 + 1.16667 NA Intergenic Intergenic 186716 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 264-11 chr3 34046206 34046464 + 1.16667 NA Intergenic MIRb|SINE|MIR 247705 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 215.667-36 chr4 144884037 144884513 + 1.16667 NA Intergenic Intergenic 213107 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 235-14 chr15 78499317 78499577 + 1.16667 NA 3' UTR (NM_001320941, exon 21 of 21) 3' UTR (NM_001320941, exon 21 of 21) -8117 NM_001083612 123688 Hs.307962 NM_001013619 ENSG00000188266 HYKK AGPHD1 hydroxylysine kinase protein-coding 161.667-6 chr1 157071399 157071608 + 1.16667 NA Intergenic Intergenic -25761 NM_198236 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding 250.5-7 chr2 8950237 8950686 + 1.16667 NA intron (NR_135600, intron 1 of 12) AluY|SINE|Alu 53223 NR_135604 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 178-11 chr11 100229667 100229898 + 1.16667 NA intron (NM_001243270, intron 15 of 23) intron (NM_001243270, intron 15 of 23) -457506 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 212.667-46 chr8 47167931 47168215 + 1.16667 NA Intergenic Intergenic -21234 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 181-64 chr8 114211828 114212055 + 1.16667 NA Intergenic L1MD3|LINE|L1 -775002 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 383.834 chr3 45267808 45268338 + 1.16667 NA Intergenic L1MEd|LINE|L1 -41786 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 302.501-2 chr11 13175074 13175370 + 1.16667 NA Intergenic MIR|SINE|MIR -101430 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 118-23 chr12 44693984 44694145 + 1.16667 NA intron (NM_006159, intron 13 of 20) MLT2B4|LTR|ERVL 181597 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 115.833-70 chr6 129264873 129265048 + 1.16667 NA intron (NM_000426, intron 15 of 64) L2a|LINE|L2 381819 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 249.167-12 chr8 125128422 125128973 + 1.16667 NA intron (NM_001349486, intron 3 of 7) MLT1D|LTR|ERVL-MaLR 36837 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 224.667-35 chrX 151984012 151984375 + 1.16667 NA Intergenic Tigger15a|DNA|TcMar-Tigger -9517 NM_004961 2564 Hs.22785 NM_004961 ENSG00000102287 GABRE - gamma-aminobutyric acid type A receptor epsilon subunit protein-coding 323.834-4 chrX 57450491 57450867 + 1.16667 NA intron (NM_001353841, intron 9 of 9) intron (NM_001353841, intron 9 of 9) -141157 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 274.334-5 chr3 137652630 137653004 + 1.16667 NA Intergenic Intergenic -111498 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 205.667-60 chr8 132196333 132196624 + 1.16667 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -91213 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 218.167-23 chr5 81544651 81544957 + 1.16667 NA intron (NM_012446, intron 4 of 16) MLT1J2|LTR|ERVL-MaLR -150670 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 343.334 chr3 85095508 85096060 + 1.16667 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -33520 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 153.834 chr11 67234231 67234467 + 1.16667 NA intron (NR_027473, intron 12 of 20) intron (NR_027473, intron 12 of 20) -5665 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 306.334-3 chr22 30527571 30527864 + 1.16667 NA intron (NM_001193336, intron 8 of 11) AluJb|SINE|Alu 14937 NM_001353441 730005 Hs.505605 NM_001193336 ENSG00000214491 SEC14L6 - SEC14 like lipid binding 6 protein-coding 248.333-12 chr7 51027225 51027648 + 1.16667 NA intron (NM_015198, intron 10 of 12) intron (NM_015198, intron 10 of 12) -233983 NM_001371008 205.333-18 chr18 5590199 5590510 + 1.16667 NA intron (NM_001281535, intron 3 of 21) L1ME1|LINE|L1 38637 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 148.667-48 chr3 115089732 115089895 + 1.16667 NA intron (NM_001348800, intron 1 of 11) intron (NM_001348800, intron 1 of 11) 10495 NM_001348804 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 197.167-57 chr8 86471384 86471700 + 1.16667 NA TTS (NM_001317807) TTS (NM_001317807) 37144 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 140.167-54 chr5 41595876 41596159 + 1.16667 NA Intergenic L1MEd|LINE|L1 -85416 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 322.501 chr1 80747771 80748255 + 1.16667 NA Intergenic L1ME3A|LINE|L1 106726 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 268.5-15 chr4 97615388 97615719 + 1.16667 NA intron (NM_174952, intron 10 of 10) FLAM_C|SINE|Alu 248627 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 151-26 chr15 50313907 50314144 + 1.16667 NA intron (NM_016654, intron 1 of 8) intron (NM_016654, intron 1 of 8) -40149 NR_024490 100129387 Hs.659360 NR_024490 GABPB1-AS1 - GABPB1 antisense RNA 1 ncRNA 229.334-3 chr8 127538125 127538370 + 1.16667 NA Intergenic MIR|SINE|MIR -56108 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 113.834-4 chr4 62074044 62074162 + 1.16667 NA 3' UTR (NM_001322402, exon 26 of 26) 3' UTR (NM_001322402, exon 26 of 26) 87662 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 282.501-4 chr2 202829916 202830245 + 1.16667 NA promoter-TSS (NM_001288624) promoter-TSS (NM_001288624) -846 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 120-116 chr9 108416511 108416800 + 1.16667 NA Intergenic Intergenic 439331 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 190.167-34 chr4 28150599 28150979 + 1.16667 NA Intergenic Intergenic -668793 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 258.834 chr15 64566368 64566786 + 1.16667 NA intron (NM_015042, intron 1 of 8) intron (NM_015042, intron 1 of 8) 67157 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 163.5-30 chr19 32598387 32598598 + 1.16667 NA intron (NM_032139, intron 28 of 28) MIRb|SINE|MIR 9977 NR_145718 109616972 NR_145718 ENSG00000201388 SNORA68B - small nucleolar RNA, H/ACA box 68B snoRNA 141-73 chr5 86688073 86688212 + 1.16667 NA Intergenic MIRb|SINE|MIR -58676 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 174.834-6 chr3 186453332 186453508 + 1.16667 NA Intergenic L1MC4|LINE|L1 13075 NR_151709 107986164 Hs.131227 NR_151708 ENSG00000234548 LINC02020 - long intergenic non-protein coding RNA 2020 ncRNA 330-6 chr2 147027033 147027391 + 1.16667 NA Intergenic MIRc|SINE|MIR 440155 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 145-9 chr10 10396813 10397214 + 1.16667 NA Intergenic Intergenic 65336 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 586.501 chr1 215608844 215609703 + 1.16667 NA intron (NM_001319294, intron 14 of 17) L2c|LINE|L2 41969 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 255-5 chr11 21155322 21155733 + 1.16667 NA intron (NM_201551, intron 13 of 18) L2c|LINE|L2 485941 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 247.5-21 chr3 76305924 76306204 + 1.16667 NA Intergenic MER20|DNA|hAT-Charlie -520515 NM_001290210 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 132.834-2 chr10 12187108 12187343 + 1.16667 NA intron (NM_001321648, intron 1 of 10) AluJb|SINE|Alu 8666 NM_014142 11164 Hs.555956 NM_014142 ENSG00000165609 NUDT5 YSA1|YSA1H|YSAH1|hNUDT5 nudix hydrolase 5 protein-coding 150.834 chr10 83484731 83484918 + 1.16667 NA Intergenic L1MB2|LINE|L1 192265 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 264.167-2 chr10 36445902 36446380 + 1.16667 NA Intergenic Intergenic 667839 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 306 chr1 57829551 57830108 + 1.16667 NA intron (NM_001353980, intron 3 of 5) MIRc|SINE|MIR -30752 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 308.167-5 chr5 108284567 108285083 + 1.16667 NA intron (NM_001163315, intron 4 of 8) Tigger1|DNA|TcMar-Tigger 97273 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 116.5-70 chr5 117073233 117073410 + 1.16667 NA Intergenic Intergenic -311112 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 194.167-37 chr7 18219050 18219320 + 1.16667 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -70907 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 201.001 chr7 37618077 37618254 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger -65601 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 180.334-6 chr22 44560941 44561149 + 1.16667 NA Intergenic L1MEc|LINE|L1 -8295 NR_028410 388910 Hs.332685 NM_001012986 ENSG00000187012 LINC00207 NCRNA00207 long intergenic non-protein coding RNA 207 ncRNA 216.5 chr1 49418967 49419434 + 1.16667 NA intron (NR_046839, intron 3 of 3) intron (NR_046839, intron 3 of 3) 52885 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 246.5-19 chr5 130913118 130913409 + 1.16667 NA Intergenic L1MA4|LINE|L1 251993 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 261.001-4 chr8 77543024 77543271 + 1.16667 NA Intergenic Intergenic 92450 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 232.833-15 chr4 70067562 70067962 + 1.16667 NA intron (NR_003720, intron 1 of 12) MIRb|SINE|MIR 376 NR_003720 286828 Hs.631945 NR_003720 ENSG00000234124 CSN1S2AP CSN1S2A casein alpha s2 like A, pseudogene pseudo 223-16 chr20 38205369 38205671 + 1.16667 NA Intergenic L1MA9|LINE|L1 -39012 NM_001323316 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 309.5 chr11 82079562 82079966 + 1.16667 NA intron (NR_120571, intron 5 of 7) intron (NR_120571, intron 5 of 7) -188928 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 180-2 chr1 213554972 213555318 + 1.16667 NA Intergenic Intergenic -369604 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 177.834-4 chr3 153867247 153867412 + 1.16667 NA Intergenic L1MA2|LINE|L1 -104803 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 168-78 chr8 24145136 24145332 + 1.16667 NA Intergenic L1M4|LINE|L1 -148806 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 168.667-47 chr21 30101908 30102147 + 1.16667 NA Intergenic Intergenic 64778 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 278.001 chr14 42851764 42852110 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 1245081 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 313.667-16 chr8 64077270 64077695 + 1.16667 NA intron (NR_125826, intron 4 of 4) MIRc|SINE|MIR 291076 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 275.667-25 chr8 8521314 8521714 + 1.16667 NA Intergenic Intergenic -135075 NR_163138 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 273-4 chr14 66850949 66851358 + 1.16667 NA intron (NM_001024218, intron 4 of 21) L1ME3A|LINE|L1 -338287 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 133.667-44 chr17 70219309 70219636 + 1.16667 NA Intergenic Intergenic 49937 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 201-36 chr5 52497561 52497767 + 1.16667 NA Intergenic Intergenic -290252 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 258.333-8 chr11 20090903 20091394 + 1.16667 NA intron (NM_182964, intron 27 of 37) intron (NM_182964, intron 27 of 37) -41845 NR_046672 100874014 Hs.557916 NR_046672 ENSG00000254453 NAV2-AS2 - NAV2 antisense RNA 2 ncRNA 177 chr1 70739619 70739831 + 1.16667 NA intron (NR_125938, intron 5 of 6) intron (NR_125938, intron 5 of 6) 33272 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 237.334-4 chr16 62545733 62546196 + 1.16667 NA Intergenic MIRb|SINE|MIR -509526 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 176.334-10 chr6 38572803 38573058 + 1.16667 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 23137 NM_001172418 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 163-58 chr7 53683446 53683712 + 1.16667 NA intron (NR_038371, intron 5 of 5) L1MC3|LINE|L1 128352 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 222.833-10 chr2 228046799 228047166 + 1.16667 NA intron (NM_030623, intron 3 of 10) intron (NM_030623, intron 3 of 10) 134663 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 244.667-21 chr6 90719642 90719975 + 1.16667 NA Intergenic Intergenic -132736 NM_145331 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 216.5-10 chr17 58410315 58410711 + 1.16667 NA intron (NM_001305544, intron 2 of 9) intron (NM_001305544, intron 2 of 9) 7021 NM_001305544 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 168.834-7 chr4 90078079 90078288 + 1.16667 NA Intergenic MIRb|SINE|MIR -49350 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 279.334-8 chr6 56146754 56147148 + 1.16667 NA intron (NR_134849, intron 10 of 29) intron (NR_134849, intron 10 of 29) -55289 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 203.167-21 chr17 64123337 64123535 + 1.16667 NA intron (NM_001433, intron 1 of 21) intron (NM_001433, intron 1 of 21) 6708 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 262.5-6 chr15 96614617 96614978 + 1.16667 NA Intergenic L1MB7|LINE|L1 166857 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 159.667-23 chr11 74186779 74187064 + 1.16667 NA intron (NM_001271593, intron 1 of 13) L1MEd|LINE|L1 15632 NM_001271593 51400 Hs.503251 NM_016147 ENSG00000214517 PPME1 ABDH19|PME-1 protein phosphatase methylesterase 1 protein-coding 194.667-59 chr7 16305060 16305547 + 1.16667 NA intron (NM_001368197, intron 3 of 8) intron (NM_001368197, intron 3 of 8) 94817 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 264.667-3 chr10 9068004 9068400 + 1.16667 NA Intergenic Intergenic 170213 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 279.834-5 chr5 25577532 25577896 + 1.16667 NA Intergenic L2a|LINE|L2 386761 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 311.167-3 chr18 9453456 9453850 + 1.16667 NA Intergenic L1ME4b|LINE|L1 -21860 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 195.167-29 chr5 52648518 52648820 + 1.16667 NA Intergenic MIR|SINE|MIR -139247 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 163.833-37 chr2 210609958 210610187 + 1.16667 NA intron (NR_163592, intron 9 of 27) intron (NR_163592, intron 9 of 27) -7499 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 172-63 chr7 1656830 1657074 + 1.16667 NA Intergenic L1ME2z|LINE|L1 -31167 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 213.167-24 chr5 84625125 84625339 + 1.16667 NA Intergenic Intergenic -240352 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 237.167-7 chr15 60942381 60942676 + 1.16667 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 260959 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 274.667-18 chr9 22678556 22678895 + 1.16667 NA intron (NR_038977, intron 2 of 5) intron (NR_038977, intron 2 of 5) 32525 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 356.667-5 chr21 16079849 16080439 + 1.16667 NA intron (NR_111005, intron 1 of 6) L2a|LINE|L2 9030 NR_111004 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 333.834-2 chr7 30422598 30423081 + 1.16667 NA Intergenic Intergenic 31954 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 306.667-10 chrUn_KI270438v1 110015 110665 + 1.16667 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 283.833-5 chr3 136677442 136677884 + 1.16667 NA intron (NM_005862, intron 1 of 33) MLT1A0|LTR|ERVL-MaLR 74715 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 200.833-24 chr3 84674541 84674868 + 1.16667 NA intron (NR_033860, intron 16 of 20) LTR52-int|LTR|ERVL 194871 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 128.834-6 chr8 109872780 109873114 + 1.16667 NA Intergenic Intergenic 102824 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 221.834-2 chr4 43117856 43118079 + 1.16667 NA Intergenic L1MA1|LINE|L1 224701 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 174.667-29 chr17 52359026 52359271 + 1.16667 NA Intergenic L2|LINE|L2 -31374 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 179.5-12 chr16 81029220 81029405 + 1.16667 NA 3' UTR (NM_001270474, exon 10 of 10) 3' UTR (NM_001270474, exon 10 of 10) -6530 NM_015251 23300 Hs.16349 NM_015251 ENSG00000166454 ATMIN ASCIZ|ZNF822 ATM interactor protein-coding 282.834-6 chr9 71360907 71361301 + 1.16667 NA intron (NM_001366143, intron 1 of 25) AluSx|SINE|Alu 85867 NM_001366141 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 221.501-2 chr6 146789200 146789391 + 1.16667 NA intron (NM_024694, intron 33 of 35) intron (NM_024694, intron 33 of 35) 14529 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 278.667-19 chr6 133047724 133048141 + 1.16667 NA Intergenic Intergenic -40148 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 403.167 chr1 82447333 82447832 + 1.16667 NA Intergenic L2a|LINE|L2 -455601 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 308.667-11 chr8 139387338 139387729 + 1.16667 NA Intergenic AluSg|SINE|Alu 315590 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 132.167-34 chr2 57852696 57852885 + 1.16667 NA Intergenic Intergenic -54861 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 219.167-24 chr8 73138935 73139281 + 1.16667 NA Intergenic Intergenic -45936 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 191.167-34 chr8 77683337 77683609 + 1.16667 NA Intergenic Intergenic 232776 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 212.334-2 chr2 32549284 32549629 + 1.16667 NA exon (NM_016252, exon 65 of 74) exon (NM_016252, exon 65 of 74) 17303 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 186.334-3 chr20 31495808 31496259 + 1.16667 NA Intergenic Intergenic 10255 NR_024358 140875 Hs.283478 NR_024358 ENSG00000233354 LINC00028 C20orf93|NCRNA00028|dJ1093G12.6 long intergenic non-protein coding RNA 28 ncRNA 299.833-4 chr2 190916300 190916820 + 1.16667 NA intron (NM_014905, intron 7 of 17) intron (NM_014905, intron 7 of 17) 35739 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 152.333-68 chr8 140206749 140206979 + 1.16667 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -106329 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 186-57 chr8 84280137 84280365 + 1.16667 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 95585 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 214.334 chr10 24233180 24233441 + 1.16667 NA intron (NM_019590, intron 2 of 20) MSTB1|LTR|ERVL-MaLR 24172 NM_019590 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 128.333-46 chr16 68053244 68053438 + 1.16667 NA intron (NM_017803, intron 4 of 16) L1ME3B|LINE|L1 -29474 NM_018380 55794 Hs.458313 NM_018380 ENSG00000182810 DDX28 MDDX28 DEAD-box helicase 28 protein-coding 245.5-18 chr5 18182754 18182994 + 1.16667 NA Intergenic MLT1C|LTR|ERVL-MaLR 375600 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 237-23 chr8 102806150 102806544 + 1.16667 NA promoter-TSS (NR_149020) promoter-TSS (NR_149020) -475 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 254.833-6 chr17 69928530 69928928 + 1.16667 NA Intergenic Intergenic -32978 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 256.667-21 chr4 94244432 94244729 + 1.16667 NA intron (NM_001128429, intron 6 of 23) Tigger9a|DNA|TcMar-Tigger -8729 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 133.667-68 chr4 116961472 116961616 + 1.16667 NA Intergenic Intergenic 124032 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 251-22 chr6 69864774 69865038 + 1.16667 NA Intergenic Intergenic -1650 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 270.001 chr14 64405982 64406222 + 1.16667 NA intron (NM_005956, intron 2 of 27) AluSq2|SINE|Alu 17749 NM_001364837 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 173-21 chr16 6689125 6689380 + 1.16667 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -84557 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 208.5-28 chr2 161148299 161148637 + 1.16667 NA intron (NM_004180, intron 1 of 7) L1MB5|LINE|L1 11505 NM_004180 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 244.5-14 chr2 39019447 39019907 + 1.16667 NA intron (NM_005633, intron 10 of 22) intron (NM_005633, intron 10 of 22) -59333 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 137.5-92 chr7 158614928 158615086 + 1.16667 NA Intergenic L1MC5|LINE|L1 23391 NR_049893 100847032 NR_049893 ENSG00000265598 MIR5707 - microRNA 5707 ncRNA 215.5 chr1 174429925 174430221 + 1.16667 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) -17891 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 228.667-13 chr15 73114711 73115141 + 1.16667 NA intron (NM_002499, intron 1 of 28) intron (NM_002499, intron 1 of 28) 62442 NM_001172624 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 187-47 chr8 123750054 123750355 + 1.16667 NA Intergenic Intergenic -12811 NM_001003954 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 222.334-3 chr20 38569375 38569634 + 1.16667 NA intron (NM_001282917, intron 26 of 29) intron (NM_001282917, intron 26 of 29) -11693 NM_001018082 149685 Hs.368028 NM_174906 ENSG00000182035 ADIG SMAF1 adipogenin protein-coding 213.667-37 chr6 56712682 56713004 + 1.16667 NA intron (NM_001144770, intron 3 of 94) intron (NM_001144770, intron 3 of 94) -69954 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 233.167-21 chr2 76083776 76084267 + 1.16667 NA Intergenic Intergenic -373106 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 147.5-91 chr9 109122343 109122553 + 1.16667 NA Intergenic Intergenic -2501 NM_032012 23731 Hs.308074 NM_032012 ENSG00000106771 TMEM245 C9orf5|CG-2|CG2 transmembrane protein 245 protein-coding 281 chr1 169173929 169174285 + 1.16667 NA intron (NM_197972, intron 10 of 11) intron (NM_197972, intron 10 of 11) 67417 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 213.834-3 chr15 98015537 98015776 + 1.16667 NA intron (NR_146563, intron 2 of 2) L1ME4b|LINE|L1 12618 NR_146565 105371008 NR_146563 LINC02251 - long intergenic non-protein coding RNA 2251 ncRNA 203.167-18 chr15 69299892 69300196 + 1.16667 NA intron (NM_017705, intron 1 of 8) intron (NM_017705, intron 1 of 8) 1132 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 153.5-7 chr10 57854212 57854392 + 1.16667 NA Intergenic Intergenic 413592 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 156.5-20 chr11 86075469 86075668 + 1.16667 NA Intergenic AluJr4|SINE|Alu -5708 NM_001206947 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 203.334 chr10 8915811 8915995 + 1.16667 NA Intergenic Intergenic 17914 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 208.667-24 chr2 54271150 54271347 + 1.16667 NA intron (NM_001320589, intron 4 of 4) LTR8B|LTR|ERV1 -15019 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 234.667-20 chr20 19589102 19589363 + 1.16667 NA intron (NM_020689, intron 6 of 16) LTR16C|LTR|ERVL -297289 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 278.834-2 chr9 18467487 18467879 + 1.16667 NA Intergenic L2c|LINE|L2 -6470 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 159.667-67 chr5 37086904 37087191 + 1.16667 NA Intergenic HERVK22-int|LTR|ERVK -161999 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 374.334 chr3 80788645 80789046 + 1.16667 NA non-coding (NR_147143, exon 4 of 5) non-coding (NR_147143, exon 4 of 5) 18141 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 185.833-24 chr3 174099125 174099519 + 1.16667 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -178526 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 208.501 chr14 73027688 73027924 + 1.16667 NA promoter-TSS (NM_001281734) promoter-TSS (NM_001281734) -700 NM_001281734 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 214.5-37 chr7 17388885 17389233 + 1.16667 NA intron (NR_110015, intron 1 of 2) intron (NR_110015, intron 1 of 2) 14142 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 317.667-7 chr7 66096859 66097645 + 1.16667 NA Intergenic AluSx1|SINE|Alu -17566 NM_001040648 27297 Hs.300684 NM_014478 ENSG00000241258 CRCP CGRP-RCP|CGRPRCP|RCP|RCP9|RPC9 CGRP receptor component protein-coding 213-15 chr2 16689532 16689882 + 1.16667 NA Intergenic MLT1E2|LTR|ERVL-MaLR -23873 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 120.333-88 chr4 89953025 89953284 + 1.16667 NA exon (NM_007351, exon 8 of 8) exon (NM_007351, exon 8 of 8) 58300 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 291.334-4 chr16 64006753 64007175 + 1.16667 NA Intergenic L1MC3|LINE|L1 1115099 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 389.834-5 chr5 35765152 35765588 + 1.16667 NA intron (NM_024867, intron 26 of 36) L1ME3B|LINE|L1 -91521 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 243.167-8 chr21 14601031 14601340 + 1.16667 NA intron (NM_001256579, intron 5 of 6) intron (NM_001256579, intron 5 of 6) -17783 NM_001256370 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 350.333-4 chr2 17269913 17270345 + 1.16667 NA Intergenic Intergenic 248311 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 147.333-66 chr4 111022172 111022446 + 1.16667 NA Intergenic Intergenic -161662 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 317.667-8 chr8 51749108 51749478 + 1.16667 NA intron (NM_144651, intron 1 of 22) Tigger3|DNA|TcMar-Tigger 60152 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 302.001 chr1 108757736 108758176 + 1.16667 NA intron (NM_007269, intron 4 of 18) L1ME4a|LINE|L1 11282 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 277.501-2 chr6 129271096 129271418 + 1.16667 NA intron (NM_000426, intron 17 of 64) intron (NM_000426, intron 17 of 64) 388116 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 225.5-45 chr7 12987171 12987712 + 1.16667 NA Intergenic Intergenic 299808 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 209-19 chr13 100785385 100785648 + 1.16667 NA intron (NR_047687, intron 2 of 7) L1MB7|LINE|L1 77191 NR_047687 100885778 Hs.602949 NR_047687 ENSG00000233009 NALCN-AS1 - NALCN antisense RNA 1 ncRNA 212.667-47 chr8 100543060 100543398 + 1.16667 NA intron (NM_001270377, intron 1 of 4) intron (NM_001270377, intron 1 of 4) 16530 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 278.833-7 chr5 41647210 41647706 + 1.16667 NA Intergenic Intergenic -136857 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 370.834 chr3 105920250 105920847 + 1.16667 NA Intergenic L1M3b|LINE|L1 -51147 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 116.667-94 chr6 82948769 82948889 + 1.16667 NA intron (NR_146807, intron 10 of 10) L1MA3|LINE|L1 117012 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 428.667-4 chr7 125703304 125703855 + 1.16667 NA Intergenic Intergenic -439288 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 240.667-23 chr20 41562838 41563189 + 1.16667 NA intron (NM_032221, intron 1 of 36) intron (NM_032221, intron 1 of 36) 55364 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 235.334-7 chrX 53525512 53525795 + 1.16667 NA Intergenic THE1D|LTR|ERVL-MaLR 30688 NR_029513 407054 NR_029513 ENSG00000271886 MIR98 MIRLET7L|MIRN98|hsa-mir-98|miR-98 microRNA 98 ncRNA 182.834-3 chr15 63384185 63384365 + 1.16667 NA Intergenic MER39|LTR|ERV1 -2165 NM_001293642 771 Hs.210995 NM_001218 ENSG00000074410 CA12 CA-XII|CAXII|HsT18816|T18816 carbonic anhydrase 12 protein-coding 164.833-44 chr7 112049497 112049714 + 1.16667 NA intron (NM_001363540, intron 1 of 52) L1MEc|LINE|L1 156794 NM_014705 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 128.334-9 chr7 35796440 35796735 + 1.16667 NA intron (NR_120512, intron 1 of 4) L2c|LINE|L2 4038 NR_120511 101928545 Hs.648103 NR_120511 SEPTIN7-AS1 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) ncRNA 144-68 chr7 29077880 29078069 + 1.16667 NA intron (NM_001371264, intron 10 of 15) intron (NM_001371264, intron 10 of 15) -47059 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 278-8 chr2 186764109 186764455 + 1.16667 NA 3' UTR (NM_177454, exon 8 of 8) 3' UTR (NM_177454, exon 8 of 8) 70222 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 217.667-4 chr1 212400949 212401274 + 1.16667 NA intron (NM_001198862, intron 3 of 8) L1MB7|LINE|L1 13775 NM_018252 55248 Hs.445386 NM_018252 ENSG00000065600 PACC1 C1orf75|PAC|TMEM206 proton activated chloride channel 1 protein-coding 237.334-9 chr5 124368491 124368742 + 1.16667 NA intron (NR_125774, intron 4 of 5) AluSx3|SINE|Alu 69904 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 267.501-3 chr15 101244470 101244873 + 1.16667 NA intron (NM_014918, intron 1 of 2) L1ME4a|LINE|L1 7377 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 448.001 chr8 78492394 78492988 + 1.16667 NA Intergenic Intergenic -23649 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 169.334 chr1 219907479 219907695 + 1.16667 NA Intergenic Intergenic 21064 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 255.667-10 chr17 54562918 54563218 + 1.16667 NA Intergenic L2|LINE|L2 -337623 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 159.834-2 chr16 47746451 47746721 + 1.16667 NA Intergenic Intergenic -111995 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 228.5-40 chr9 22564705 22565170 + 1.16667 NA Intergenic L1PA15|LINE|L1 -81263 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 262.167-24 chr9 27630925 27631254 + 1.16667 NA Intergenic L2a|LINE|L2 -57223 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 123.667-48 chr2 44780080 44780281 + 1.16667 NA Intergenic MLT1H2|LTR|ERVL-MaLR 158708 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 339.501 chr3 23818527 23818997 + 1.16667 NA intron (NM_003341, intron 3 of 5) intron (NM_003341, intron 3 of 5) 8308 NM_001202476 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 318.167-6 chr4 134766405 134766774 + 1.16667 NA Intergenic L2a|LINE|L2 342721 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 195.167-28 chr5 21931698 21932147 + 1.16667 NA intron (NM_004061, intron 6 of 14) intron (NM_004061, intron 6 of 14) -42075 NM_001364109 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 302.5-8 chr4 47078649 47078939 + 1.16667 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 47227 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 185.334-4 chr4 156587018 156587234 + 1.16667 NA Intergenic Intergenic 384673 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 203.167-16 chr14 26816054 26816264 + 1.16667 NA intron (NR_110557, intron 3 of 4) intron (NR_110557, intron 3 of 4) 5961 NR_110033 101927062 NR_110033 ENSG00000257845 LINC02294 - long intergenic non-protein coding RNA 2294 ncRNA 203.334-2 chr14 67566771 67566972 + 1.16667 NA intron (NM_020715, intron 7 of 28) intron (NM_020715, intron 7 of 28) -33021 NM_001348546 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 275.334-5 chr5 62372616 62373123 + 1.16667 NA intron (NM_001098511, intron 17 of 20) intron (NM_001098511, intron 17 of 20) 31036 NM_014473 27292 Hs.731665 NM_014473 ENSG00000086189 DIMT1 DIM1|DIMT1L|HSA9761|HUSSY5 DIMT1 rRNA methyltransferase and ribosome maturation factor protein-coding 265.334-13 chr4 150536738 150537086 + 1.16667 NA intron (NM_001367550, intron 40 of 56) L1PA16|LINE|L1 -42177 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 158.167-41 chr5 67377508 67377664 + 1.16667 NA Intergenic Intergenic -180787 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 351.167-8 chr3 189781231 189781791 + 1.16667 NA intron (NM_003722, intron 3 of 13) intron (NM_003722, intron 3 of 13) -8148 NM_001114981 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 206.833-4 chr16 72551091 72551496 + 1.16667 NA intron (NR_159371, intron 1 of 5) Cheshire|DNA|hAT-Charlie 113677 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 198.334-3 chr7 33726095 33726336 + 1.16667 NA Intergenic AluSz6|SINE|Alu -178700 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 247-2 chr1 217897211 217897471 + 1.16667 NA intron (NR_048550, intron 1 of 3) intron (NR_048550, intron 1 of 3) 4441 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 199.667-56 chr6 157724221 157724606 + 1.16667 NA Intergenic LTR24B|LTR|ERV1 -98833 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 234.5-25 chr5 119379239 119379953 + 1.16667 NA intron (NM_014350, intron 1 of 1) AluSx|SINE|Alu 23577 NM_014350 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 210.5 chr1 57513201 57513536 + 1.16667 NA intron (NM_001353980, intron 4 of 5) L2a|LINE|L2 -88447 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 228.167-12 chr2 170490784 170491078 + 1.16667 NA intron (NM_001083615, intron 25 of 33) L1MEc|LINE|L1 -139988 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 366.5 chr1 83789822 83790278 + 1.16667 NA intron (NR_119375, intron 1 of 2) AluY|SINE|Alu 70496 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 233.834-14 chr9 103154060 103154326 + 1.16667 NA intron (NR_121578, intron 8 of 9) intron (NR_121578, intron 8 of 9) 158860 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 124.5-47 chr3 96102195 96102366 + 1.16667 NA Intergenic L1PA17|LINE|L1 -257684 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 167.167-10 chr10 50258060 50258313 + 1.16667 NA Intergenic Intergenic -9576 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 266-23 chr8 123979359 123979648 + 1.16667 NA intron (NM_001039112, intron 10 of 40) MIR|SINE|MIR 61279 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 206.5-11 chr16 4254244 4254494 + 1.16667 NA promoter-TSS (NR_039999) promoter-TSS (NR_039999) -580 NR_039999 100507501 Hs.632979 NR_039999 LINC01569 - long intergenic non-protein coding RNA 1569 ncRNA 202-16 chr18 40764648 40764992 + 1.16667 NA Intergenic Intergenic 698534 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 215.001 chr16 1596371 1596592 + 1.16667 NA intron (NM_014714, intron 4 of 30) intron (NM_014714, intron 4 of 30) 15591 NM_014714 9742 Hs.389438 NM_014714 ENSG00000187535 IFT140 MZSDS|RP80|SRTD9|WDTC2|c305C8.4|c380F5.1|gs114 intraflagellar transport 140 protein-coding 254-10 chr2 113823933 113824383 + 1.16667 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat -65776 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 160.333-29 chr2 89774723 89774921 + 1.16667 NA Intergenic Intergenic -136915 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 204.001-2 chr17 54200075 54200332 + 1.16667 NA Intergenic Intergenic 377276 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 239.834-5 chr5 154496367 154496773 + 1.16667 NA Intergenic Intergenic -18343 NM_004821 9421 Hs.152531 NM_004821 ENSG00000113196 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 237.001 chr7 52566265 52566514 + 1.16667 NA Intergenic Intergenic -469244 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 221.5-22 chr2 209760795 209761080 + 1.16667 NA Intergenic MER5B|DNA|hAT-Charlie -10895 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 362.167-6 chr4 39252888 39253482 + 1.16667 NA exon (NM_001317924, exon 24 of 36) exon (NM_001317924, exon 24 of 36) 70656 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 149.833-65 chr9 93383248 93383482 + 1.16667 NA Intergenic AluSx1|SINE|Alu -36951 NM_001098808 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 124.334-2 chr14 83320212 83320325 + 1.16667 NA Intergenic Intergenic 677636 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 145.5-5 chr10 88752640 88752798 + 1.16667 NA TTS (NM_001080518) TTS (NM_001080518) -8687 NM_001102469 643418 Hs.632091 NM_001102469 ENSG00000204020 LIPN ARCI8|LI4|LIPL4|bA186O14.3 lipase family member N protein-coding 348.334-2 chr15 70951037 70951575 + 1.16667 NA intron (NM_017691, intron 8 of 15) L1PA16|LINE|L1 58863 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 264-8 chr2 79564437 79564868 + 1.16667 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 41469 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 171-39 chr4 37995182 37995398 + 1.16667 NA intron (NM_001253912, intron 2 of 20) intron (NM_001253912, intron 2 of 20) 34892 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 158.5-58 chr4 91097848 91098013 + 1.16667 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 862899 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 421.5-2 chr5 16022127 16022793 + 1.16667 NA Intergenic Intergenic 87278 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 154.333-48 chr3 48366125 48366427 + 1.16667 NA Intergenic L1MD2|LINE|L1 -5943 NM_001159927 285231 Hs.288793 NM_207102 ENSG00000164049 FBXW12 FBW12|FBXO12|FBXO35 F-box and WD repeat domain containing 12 protein-coding 150-78 chr7 37700403 37700633 + 1.16667 NA intron (NM_001329994, intron 3 of 3) intron (NM_001329994, intron 3 of 3) 16752 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 211.834-7 chrX 27662871 27663127 + 1.16667 NA intron (NM_001353450, intron 2 of 4) L2c|LINE|L2 72655 NM_001353448 347442 Hs.720885 NM_001136533 ENSG00000189186 DCAF8L2 WDR42C DDB1 and CUL4 associated factor 8 like 2 protein-coding 146.667-96 chr8 117760823 117761023 + 1.16667 NA Intergenic Charlie1a|DNA|hAT-Charlie 159990 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 122.5-56 chr21 24105198 24105390 + 1.16667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 216083 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 208.167-16 chr22 45143981 45144295 + 1.16667 NA intron (NR_038956, intron 1 of 2) L1MEg|LINE|L1 8446 NR_038957 100506714 Hs.189902 NR_038956 NUP50-DT NUP50-AS1 NUP50 divergent transcript ncRNA 275.834-4 chr6 103193459 103193851 + 1.16667 NA Intergenic MSTB1|LTR|ERVL-MaLR 1665891 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 268.167-9 chr7 94826674 94827166 + 1.16667 NA Intergenic Tigger17a|DNA|TcMar-Tigger -80674 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 160.333-10 chr11 99008603 99008860 + 1.16667 NA Intergenic Intergenic -12218 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 265.167-2 chr1 79477073 79477497 + 1.16667 NA Intergenic MIR|SINE|MIR -470555 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 166.167-8 chr11 127725477 127725780 + 1.16667 NA Intergenic MER58C|DNA|hAT-Charlie 454558 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 132.5-45 chr2 44253076 44253210 + 1.16667 NA Intergenic L1MB1|LINE|L1 -22337 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 262.667-27 chr6 49847439 49847846 + 1.16667 NA intron (NM_170609, intron 4 of 6) MSTB|LTR|ERVL-MaLR 18893 NM_170609 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 267.834-6 chr9 33196295 33196686 + 1.16667 NA Intergenic AluSz6|SINE|Alu 28631 NR_108108 101929639 Hs.545818 NR_108108 ENSG00000233554 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 189.667-49 chr8 106010113 106010355 + 1.16667 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 50269 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 186.167-40 chr8 70735210 70735437 + 1.16667 NA 3' UTR (NM_001287258, exon 6 of 6) 3' UTR (NM_001287258, exon 6 of 6) 65984 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 150.334 chr18 14076710 14076908 + 1.16667 NA non-coding (NR_033354, exon 6 of 6) non-coding (NR_033354, exon 6 of 6) 55626 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 135.834 chr4 43216910 43217083 + 1.16667 NA Intergenic MamRep1879|DNA|hAT-Tip100? 275547 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 161.667-39 chr2 22357662 22357901 + 1.16667 NA Intergenic L1MEg2|LINE|L1 -178698 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 175.334-5 chr2 16570115 16570509 + 1.16667 NA intron (NM_030797, intron 3 of 11) intron (NM_030797, intron 3 of 11) 95522 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 250.334-2 chr18 12704133 12704455 + 1.16667 NA intron (NM_020232, intron 1 of 6) intron (NM_020232, intron 1 of 6) 1252 NM_020232 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 361.667-3 chr15 96450893 96451366 + 1.16667 NA Intergenic Intergenic 117364 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 291.667-10 chr12 62478267 62478572 + 1.16667 NA intron (NM_001278472, intron 2 of 35) Charlie29a|DNA|hAT-Charlie 11593 NM_001278471 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 218.834 chr1 182716975 182717245 + 1.16667 NA Intergenic Intergenic 4248 NR_146548 105371644 Hs.496952 NR_146548 ENSG00000227181 LINC01688 - long intergenic non-protein coding RNA 1688 ncRNA 227.167-18 chr2 188274060 188274388 + 1.16667 NA intron (NR_126396, intron 1 of 2) MER66B|LTR|ERV1 13467 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 256.5-29 chr5 119859190 119859561 + 1.16667 NA Intergenic L1MA8|LINE|L1 229816 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 114.833-68 chr7 146997194 146997416 + 1.16667 NA intron (NM_014141, intron 2 of 22) L1MA8|LINE|L1 100304 NR_110829 101928700 Hs.571218 NR_110829 ENSG00000236795 LOC101928700 - uncharacterized LOC101928700 ncRNA 204.333-3 chr10 44018746 44018943 + 1.16667 NA Intergenic L1ME2z|LINE|L1 106442 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 230.834-2 chr12 6994629 6994954 + 1.16667 NA intron (NR_135131, intron 7 of 7) intron (NR_135131, intron 7 of 7) 23685 NM_005768 10162 Hs.655248 NM_005768 ENSG00000111684 LPCAT3 C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy lysophosphatidylcholine acyltransferase 3 protein-coding 166.5-10 chr12 9133772 9133974 + 1.16667 NA Intergenic L2|LINE|L2 -17644 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 179.5-44 chr9 37211434 37211624 + 1.16667 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 90931 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 127-47 chr2 54194829 54194999 + 1.16667 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 61315 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 319.667-11 chr3 179879033 179879435 + 1.16667 NA intron (NM_001349404, intron 1 of 10) intron (NM_001349404, intron 1 of 10) -18960 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 153.167-33 chr3 99428802 99428940 + 1.16667 NA Intergenic L2c|LINE|L2 -209723 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 232.667-28 chr7 15821277 15821757 + 1.16667 NA Intergenic Intergenic 133139 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 142-73 chr5 39607459 39607591 + 1.16667 NA Intergenic MLT1J|LTR|ERVL-MaLR 87094 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 135.167-86 chr7 49192771 49192911 + 1.16667 NA Intergenic ERV24_Prim-int|LTR|ERV1 268294 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 241.834 chr1 69888891 69889174 + 1.16667 NA intron (NM_001370785, intron 7 of 26) Tigger1|DNA|TcMar-Tigger -30290 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 141.667-40 chr18 9376973 9377132 + 1.16667 NA intron (NM_020648, intron 3 of 4) MER2|DNA|TcMar-Tigger 42279 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 254.333-3 chr1 171879611 171879983 + 1.16667 NA intron (NM_001278252, intron 1 of 14) LTR67B|LTR|ERVL 15605 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 265.334-7 chr14 52601510 52601823 + 1.16667 NA intron (NM_001099652, intron 3 of 6) intron (NM_001099652, intron 3 of 6) 48830 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 349.667-2 chr1 169206714 169207336 + 1.16667 NA intron (NR_104229, intron 10 of 12) MSTB1|LTR|ERVL-MaLR 100335 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 177.667-49 chr3 37142326 37142538 + 1.16667 NA intron (NM_006309, intron 2 of 27) AluJb|SINE|Alu 32150 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 261.001 chr10 54087367 54087660 + 1.16667 NA intron (NM_001142765, intron 14 of 31) L1MB8|LINE|L1 -398717 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 208.167-12 chr2 75360787 75361057 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -161402 NM_015727 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 176.167-19 chr19 46932733 46933031 + 1.16667 NA intron (NM_004491, intron 2 of 6) intron (NM_004491, intron 2 of 6) 71885 NM_004491 2909 Hs.509447 NM_004491 ENSG00000160007 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 298.834-4 chr5 45196830 45197318 + 1.16667 NA Intergenic Intergenic 388127 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 228.167-21 chr6 158430337 158430836 + 1.16667 NA intron (NM_020245, intron 3 of 13) AluSx1|SINE|Alu -105850 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 198.834-5 chr12 78591983 78592191 + 1.16667 NA Intergenic L2-3_Crp|LINE|L2 -232341 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 291.333-4 chr12 45733390 45733856 + 1.16667 NA intron (NM_152641, intron 3 of 20) intron (NM_152641, intron 3 of 20) 3914 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 258.334-3 chr6 76634669 76635047 + 1.16667 NA Intergenic Intergenic -41235 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 322 chr1 185997006 185997566 + 1.16667 NA intron (NM_031935, intron 24 of 106) L2|LINE|L2 262895 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 122.667-97 chr8 117228717 117228873 + 1.16667 NA Intergenic Intergenic 93800 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 125.167-67 chr6 117209937 117210064 + 1.16667 NA Intergenic L1MA3|LINE|L1 -55558 NM_182645 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 282.834-2 chr3 156928028 156928431 + 1.16667 NA intron (NM_001004316, intron 5 of 12) L1MC1|LINE|L1 101876 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 194-40 chr4 37561977 37562290 + 1.16667 NA intron (NM_001104629, intron 2 of 3) Tigger17a|DNA|TcMar-Tigger -22100 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 193.167-18 chr18 73836523 73836831 + 1.16667 NA Intergenic L1MB1|LINE|L1 311157 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 147.833-70 chr8 128554415 128554632 + 1.16667 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 10156 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 187.667-47 chr7 26140669 26140943 + 1.16667 NA Intergenic Intergenic -11392 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 115.333-83 chr5 55188892 55189045 + 1.16667 NA Intergenic Intergenic -15791 NM_001170402 166979 Hs.669184 NM_152623 ENSG00000164287 CDC20B G6VTS76519 cell division cycle 20B protein-coding 264.501 chr18 44203732 44204007 + 1.16667 NA Intergenic L1PA16|LINE|L1 327828 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 136.834-6 chr8 80805367 80805492 + 1.16667 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 69039 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 197.5-56 chrX 73491467 73491675 + 1.16667 NA Intergenic L1PA11|LINE|L1 44317 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 296.001 chr4 171601247 171601512 + 1.16667 NA Intergenic Intergenic 37384 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 214.667-2 chr1 36081178 36081450 + 1.16667 NA Intergenic Intergenic -2780 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 202.5-23 chr6 9980376 9980662 + 1.16667 NA Intergenic MIRb|SINE|MIR -423983 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 133.333-90 chr4 89098203 89098469 + 1.16667 NA Intergenic L1MB7|LINE|L1 -14481 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 139.334-6 chr2 116281060 116281187 + 1.16667 NA Intergenic L1PA15-16|LINE|L1 937308 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 161-13 chr11 105144901 105145242 + 1.16667 NA Intergenic Intergenic -5302 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 220.167-2 chr10 22385443 22385667 + 1.16667 NA intron (NM_172242, intron 4 of 9) L2a|LINE|L2 40059 NM_012443 9576 Hs.655170 NM_012443 ENSG00000077327 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 137.833-17 chr18 62400213 62400464 + 1.16667 NA Intergenic MER63B|DNA|hAT-Blackjack 75028 NM_001270951 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 165.833-17 chr14 56190692 56190958 + 1.16667 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 72414 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 331.667-3 chr2 25848251 25848725 + 1.16667 NA intron (NM_018263, intron 1 of 11) AluY|SINE|Alu -17587 NM_001369346 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 253.001 chr5 120316467 120316790 + 1.16667 NA Intergenic Intergenic -147650 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 209.334-3 chr3 88329968 88330423 + 1.16667 NA Intergenic MSTA|LTR|ERVL-MaLR -8261 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 143.334-5 chr3 143448503 143448786 + 1.16667 NA intron (NM_173653, intron 12 of 15) L1ME4a|LINE|L1 106398 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 225-17 chr17 57502803 57503034 + 1.16667 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 20679 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 222.834-2 chr1 147143433 147143711 + 1.16667 NA Intergenic L1M3|LINE|L1 28898 NM_005399 5565 Hs.50732 NM_005399 ENSG00000131791 PRKAB2 - protein kinase AMP-activated non-catalytic subunit beta 2 protein-coding 187.667-38 chr4 138384883 138385128 + 1.16667 NA intron (NR_051987, intron 2 of 2) intron (NR_051987, intron 2 of 2) 75294 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 420.834-2 chr11 96986265 96986756 + 1.16667 NA Intergenic Intergenic 478085 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 299.667-12 chr3 114172450 114172933 + 1.16667 NA intron (NM_000796, intron 1 of 6) MIRc|SINE|MIR 6085 NM_001290809 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 175.167-40 chr5 172948624 172948932 + 1.16667 NA intron (NM_001031711, intron 9 of 9) AluJo|SINE|Alu -9951 NM_001317981 51121 Hs.546390 NM_016093 ENSG00000037241 RPL26L1 RPL26P1 ribosomal protein L26 like 1 protein-coding 254.667-12 chr2 31313851 31314294 + 1.16667 NA Intergenic L1MC1|LINE|L1 79920 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 268.667-12 chr5 126655386 126655763 + 1.16667 NA Intergenic Intergenic 23869 NM_207408 389320 Hs.177983 NM_207408 ENSG00000196900 TEX43 C5orf48|Tseg7 testis expressed 43 protein-coding 185.834-5 chr3 149070032 149070267 + 1.16667 NA intron (NM_001318935, intron 7 of 25) Charlie1a|DNA|hAT-Charlie -16183 NR_046648 100873945 Hs.742423 NR_046648 ENSG00000239718 HLTF-AS1 - HLTF antisense RNA 1 ncRNA 140.667-66 chr5 40728330 40728577 + 1.16667 NA exon (NM_012382, exon 4 of 5) exon (NM_012382, exon 4 of 5) 27508 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 297.5-5 chr21 18627021 18627372 + 1.16667 NA intron (NR_109925, intron 2 of 3) L1MCa|LINE|L1 58968 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 126.334 chr1 159354398 159354520 + 1.16667 NA Intergenic Intergenic -39800 NM_001004467 441911 Hs.553833 NM_001004467 ENSG00000196266 OR10J3 OR1-25|OR10J3P olfactory receptor family 10 subfamily J member 3 protein-coding 215.667-43 chr5 144935100 144935316 + 1.16667 NA Intergenic L1MA9|LINE|L1 729817 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 166.167-53 chr6 83433465 83433702 + 1.16667 NA Intergenic Intergenic -2532 NM_002395 4199 Hs.21160 NM_002395 ENSG00000065833 ME1 HUMNDME|MES malic enzyme 1 protein-coding 213-29 chr8 75196672 75196940 + 1.16667 NA Intergenic Intergenic 81675 NR_103850 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 298.834 chr10 60793355 60793755 + 1.16667 NA intron (NM_033379, intron 6 of 6) intron (NM_033379, intron 6 of 6) 15077 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 145.5-6 chr11 14489922 14490226 + 1.16667 NA intron (NM_016451, intron 5 of 21) L4_A_Mam|LINE|RTE-X 9784 NM_016451 1315 Hs.339278 NM_016451 ENSG00000129083 COPB1 COPB coatomer protein complex subunit beta 1 protein-coding 165.667-62 chr6 145689491 145689656 + 1.16667 NA intron (NM_001360064, intron 1 of 3) L1MDa|LINE|L1 -2696 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 224.167-6 chr11 15695562 15695922 + 1.16667 NA intron (NM_001293172, intron 1 of 2) L2c|LINE|L2 51857 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 200.5-42 chr8 25569675 25569936 + 1.16667 NA Intergenic Intergenic 110572 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 220.667-30 chr5 84180637 84180876 + 1.16667 NA intron (NM_001278642, intron 2 of 9) MIR|SINE|MIR 204111 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 183.833-22 chr2 25501716 25501997 + 1.16667 NA intron (NM_033147, intron 9 of 19) L1MEd|LINE|L1 148366 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 270.167-17 chrX 127727097 127727511 + 1.16667 NA Intergenic L1MD2|LINE|L1 325099 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 245.667-36 chr9 12809552 12809881 + 1.16667 NA intron (NR_125775, intron 1 of 3) L1MCa|LINE|L1 4673 NR_125775 101929467 Hs.586443 NR_125775 ENSG00000235448 LURAP1L-AS1 - LURAP1L antisense RNA 1 ncRNA 218.5-18 chr2 49339960 49340302 + 1.16667 NA Intergenic Intergenic -185604 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 299.5 chr1 113098400 113098801 + 1.16667 NA intron (NM_014813, intron 8 of 17) intron (NM_014813, intron 8 of 17) 25402 NM_001312686 9860 Hs.448972 NM_014813 ENSG00000198799 LRIG2 LIG-2|LIG2|UFS2 leucine rich repeats and immunoglobulin like domains 2 protein-coding 226.167-20 chr4 63697626 63697870 + 1.16667 NA Intergenic MER84|LTR|ERV1 711702 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 235.834-8 chr7 108014808 108015067 + 1.16667 NA Intergenic AluSz|SINE|Alu -11776 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 182.333-23 chr16 75964836 75965092 + 1.16667 NA Intergenic Intergenic -238474 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 149.667-71 chr7 16646958 16647254 + 1.16667 NA intron (NM_001362718, intron 1 of 10) intron (NM_001362718, intron 1 of 10) 925 NM_014038 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 293.001-2 chr17 71390653 71390973 + 1.16667 NA Intergenic Intergenic -188634 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 126.333-9 chr10 20090192 20090437 + 1.16667 NA intron (NM_032812, intron 4 of 13) intron (NM_032812, intron 4 of 13) 273882 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 194.667-5 chr1 160638451 160638751 + 1.16667 NA intron (NM_001330754, intron 1 of 7) L2-3_Crp|LINE|L2 8443 NR_104401 6504 Hs.523660 NM_003037 ENSG00000117090 SLAMF1 CD150|CDw150|SLAM signaling lymphocytic activation molecule family member 1 protein-coding 239.334-2 chr18 66861765 66862040 + 1.16667 NA Intergenic Intergenic -219682 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 191-9 chr12 96948609 96948848 + 1.16667 NA intron (NM_001135177, intron 12 of 13) L1MEg|LINE|L1 41262 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 200.834-3 chr17 62128668 62128863 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -63487 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 189.5-26 chr2 44582740 44582952 + 1.16667 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 220899 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 206.001 chr3 27783251 27783468 + 1.16667 NA Intergenic MIR|SINE|MIR -14229 NR_146630 105377007 NR_146630 LINC01980 - long intergenic non-protein coding RNA 1980 ncRNA 242.667-22 chr6 132669402 132669634 + 1.16667 NA Intergenic Intergenic -23492 NM_138327 134864 Hs.375030 NM_138327 ENSG00000146399 TAAR1 TA1|TAR1|TRAR1 trace amine associated receptor 1 protein-coding 150-35 chr2 18789417 18789617 + 1.16667 NA Intergenic MIRc|SINE|MIR -199937 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 197-37 chr4 124215921 124216212 + 1.16667 NA Intergenic Intergenic 342368 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 288.334-5 chr7 17888752 17889086 + 1.16667 NA intron (NM_001350866, intron 5 of 26) MIRc|SINE|MIR 51575 NM_001350866 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 289.834-7 chr9 113544426 113544833 + 1.16667 NA intron (NM_001276261, intron 10 of 14) intron (NM_001276261, intron 10 of 14) 8018 NM_001276260 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 321.5-2 chr10 59829466 59829926 + 1.16667 NA intron (NM_005436, intron 3 of 8) L1MB8|LINE|L1 -76241 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 291.334 chr10 60720822 60721100 + 1.16667 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) 12567 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 254.334 chr1 180717948 180718299 + 1.16667 NA intron (NR_137330, intron 2 of 12) L3|LINE|CR1 86101 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 245.167-2 chr10 56276882 56277139 + 1.16667 NA Intergenic Intergenic 84249 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 141.5-74 chr5 129916797 129916978 + 1.16667 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 12422 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 288-20 chr9 82091503 82091856 + 1.16667 NA Intergenic MIRc|SINE|MIR 102907 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 279.5-7 chr4 130563146 130563496 + 1.16667 NA Intergenic Intergenic 186960 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 148.833-68 chrX 74905332 74905592 + 1.16667 NA intron (NM_001008537, intron 1 of 3) L1ME3Cz|LINE|L1 19990 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 213.334-6 chr9 90546063 90546588 + 1.16667 NA intron (NR_034157, intron 1 of 5) intron (NR_034157, intron 1 of 5) 36421 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 254.5-21 chr8 137879346 137879860 + 1.16667 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 203942 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 165.667-23 chr14 73313932 73314145 + 1.16667 NA intron (NM_001005745, intron 5 of 10) AluSx|SINE|Alu -68037 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 205.167-28 chr4 38917264 38917621 + 1.16667 NA intron (NM_001350633, intron 6 of 12) MIRb|SINE|MIR 49410 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 263.5-4 chr10 119355895 119356456 + 1.16667 NA intron (NM_005308, intron 2 of 15) intron (NM_005308, intron 2 of 15) -21797 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 162.834-6 chr6 142198659 142198882 + 1.16667 NA intron (NM_001286371, intron 6 of 6) Tigger14a|DNA|TcMar-Tigger 51507 NM_016485 51534 Hs.431367 NM_016485 ENSG00000009844 VTA1 C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1 vesicle trafficking 1 protein-coding 116-39 chr18 7855308 7855483 + 1.16667 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 288079 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 289.5-11 chr4 102306056 102306521 + 1.16667 NA intron (NM_022154, intron 3 of 7) (ATATAT)n|Simple_repeat|Simple_repeat 18024 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 332-4 chr20 3582037 3582547 + 1.16667 NA exon (NM_139321, exon 16 of 29) exon (NM_139321, exon 16 of 29) 81107 NM_145762 64096 Hs.302025 NM_022139 ENSG00000125861 GFRA4 - GDNF family receptor alpha 4 protein-coding 206.334-7 chr2 193967044 193967352 + 1.16667 NA Intergenic L1M5|LINE|L1 -377071 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 118-10 chr1 182372432 182372591 + 1.16667 NA Intergenic L3|LINE|CR1 18893 NM_001033056 2752 Hs.132016 NM_002065 ENSG00000135821 GLUL GLNS|GS|PIG43|PIG59 glutamate-ammonia ligase protein-coding 126.667-44 chr2 218536996 218537248 + 1.16667 NA intron (NM_020935, intron 8 of 25) L1MB7|LINE|L1 31229 NM_020935 57695 Hs.166068 NM_020935 ENSG00000135913 USP37 - ubiquitin specific peptidase 37 protein-coding 162.333-73 chr8 110069839 110069993 + 1.16667 NA Intergenic Intergenic -94145 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 155.5-62 chr9 26726343 26726527 + 1.16667 NA Intergenic Intergenic 166367 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 118.667-50 chr19 30436822 30436991 + 1.16667 NA intron (NM_014717, intron 1 of 4) intron (NM_014717, intron 1 of 4) 64522 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 204.167-18 chr20 58019832 58020084 + 1.16667 NA Intergenic Intergenic 16054 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 281.5-6 chr4 112582586 112582975 + 1.16667 NA intron (NM_018392, intron 15 of 27) L1MA4|LINE|L1 -54184 NM_001267039 51574 Hs.713663 NM_015454 ENSG00000174720 LARP7 ALAZS|HDCMA18P|PIP7S La ribonucleoprotein domain family member 7 protein-coding 219.334-4 chr15 54810631 54810846 + 1.16667 NA Intergenic Intergenic -246009 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 134.167-29 chr16 66197979 66198255 + 1.16667 NA Intergenic Intergenic -168574 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 179.167-29 chr3 30608420 30608741 + 1.16667 NA intron (NM_003242, intron 1 of 6) intron (NM_003242, intron 1 of 6) 1979 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 229.501 chr19 36080321 36080571 + 1.16667 NA intron (NM_001083961, intron 9 of 31) AluSp|SINE|Alu 25549 NM_001083961 284403 Hs.116244 NM_173636 ENSG00000075702 WDR62 C19orf14|MCPH2 WD repeat domain 62 protein-coding 159.833-34 chr3 196874957 196875211 + 1.16667 NA intron (NM_152699, intron 1 of 9) L2|LINE|L2 7164 NM_152699 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 221.167-7 chr11 105809815 105810163 + 1.16667 NA intron (NR_046356, intron 3 of 16) intron (NR_046356, intron 3 of 16) 199283 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 164.667-69 chr6 149470965 149471231 + 1.16667 NA intron (NM_207360, intron 2 of 5) intron (NM_207360, intron 2 of 5) 13916 NM_207360 340152 Hs.632618 NM_207360 ENSG00000178199 ZC3H12D C6orf95|MCPIP4|TFL|dJ281H8.1|p34 zinc finger CCCH-type containing 12D protein-coding 175.834-4 chr2 119565635 119565869 + 1.16667 NA intron (NR_073132, intron 6 of 24) intron (NR_073132, intron 6 of 24) 21303 NR_073132 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 228-20 chr2 148067512 148067728 + 1.16667 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -46016 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 121.667-43 chr18 2967608 2967887 + 1.16667 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) -21124 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 271-8 chr3 74683217 74683586 + 1.16667 NA Intergenic L1MEf|LINE|L1 -162261 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 146.5-49 chr2 235073175 235073377 + 1.16667 NA Intergenic Intergenic 45541 NM_001371306 222.5-10 chr2 63474172 63474430 + 1.16667 NA intron (NR_148704, intron 7 of 18) intron (NR_148704, intron 7 of 18) -36294 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 117.167-16 chr12 65116084 65116187 + 1.16667 NA intron (NM_007191, intron 2 of 9) intron (NM_007191, intron 2 of 9) 5170 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 253.834 chr1 200937845 200938153 + 1.16667 NA intron (NR_147176, intron 4 of 15) (ATAT)n|Simple_repeat|Simple_repeat 9055 NR_147176 647215 Hs.576504 NR_147176 ENSG00000233217 MROH3P C1orf81 maestro heat like repeat family member 3, pseudogene pseudo 212.5 chr1 163524037 163524416 + 1.16667 NA Intergenic Intergenic -101035 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 169-51 chr6 85601406 85601589 + 1.16667 NA Intergenic Intergenic -7341 NR_146778 57231 Hs.485871 NM_020468 ENSG00000135317 SNX14 RGS-PX2|SCAR20 sorting nexin 14 protein-coding 135.334 chr1 218297354 218297589 + 1.16667 NA intron (NM_016052, intron 1 of 4) MIR|SINE|MIR 12178 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 195.334-9 chr8 14271635 14271957 + 1.16667 NA intron (NM_001322879, intron 2 of 6) intron (NM_001322879, intron 2 of 6) 581714 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 196.5-24 chr3 114882747 114882959 + 1.16667 NA intron (NM_001164343, intron 3 of 11) HAL1ME|LINE|L1 9820 NR_126422 104413890 Hs.612732 NR_126422 ENSG00000239946 ZBTB20-AS3 - ZBTB20 antisense RNA 3 ncRNA 198-66 chrX 66461204 66461606 + 1.16667 NA Intergenic AluSg|SINE|Alu 154625 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 151.167-27 chr2 45955556 45955886 + 1.16667 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 304046 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 137.834-4 chr6 39006410 39006534 + 1.16667 NA intron (NM_001371, intron 87 of 91) L1MB7|LINE|L1 -42309 NM_002062 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 399-3 chr3 188483527 188484189 + 1.16667 NA intron (NM_001167672, intron 2 of 9) intron (NM_001167672, intron 2 of 9) 84808 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 153.667-70 chr7 7072688 7072887 + 1.16667 NA Intergenic SATR1|Satellite|Satellite -5742 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 200.5-6 chr11 117889873 117890173 + 1.16667 NA Intergenic Tigger7|DNA|TcMar-Tigger -12593 NM_001164831 53826 Hs.744850 NM_022003 ENSG00000137726 FXYD6 - FXYD domain containing ion transport regulator 6 protein-coding 297-8 chr7 7783213 7783498 + 1.16667 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -64748 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 223.667-30 chr8 72936188 72936529 + 1.16667 NA exon (NM_004770, exon 3 of 3) exon (NM_004770, exon 3 of 3) -72506 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 189-16 chr2 148170973 148171235 + 1.16667 NA intron (NM_018328, intron 2 of 14) L1MA7|LINE|L1 -149500 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 172.5-9 chr10 103376885 103377201 + 1.16667 NA intron (NM_139052, intron 2 of 9) AluJo|SINE|Alu 9067 NM_006951 6877 Hs.96103 NM_006951 ENSG00000148835 TAF5 TAF(II)100|TAF2D|TAFII-100|TAFII100 TATA-box binding protein associated factor 5 protein-coding 230.834-7 chr8 82153742 82154036 + 1.16667 NA Intergenic L1MC1|LINE|L1 -311603 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 202.834-2 chr22 28570702 28570931 + 1.16667 NA intron (NM_001145418, intron 2 of 22) HAL1|LINE|L1 109049 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 132.333-4 chr1 95409573 95409759 + 1.16667 NA Intergenic Intergenic -57559 NR_146486 101928169 NR_146486 LINC01650 - long intergenic non-protein coding RNA 1650 ncRNA 271.667-14 chr5 51199071 51199344 + 1.16667 NA Intergenic Intergenic 184125 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 236.167-12 chr2 43693827 43694259 + 1.16667 NA intron (NM_172069, intron 4 of 29) intron (NM_172069, intron 4 of 29) -17614 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 155-4 chr1 95352792 95352995 + 1.16667 NA promoter-TSS (NR_146486) promoter-TSS (NR_146486) -786 NR_146486 101928169 NR_146486 LINC01650 - long intergenic non-protein coding RNA 1650 ncRNA 299.667-3 chr12 91531481 91531890 + 1.16667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -348868 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 200.167 chr1 44446015 44446220 + 1.16667 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) 22116 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 271.167-5 chr11 100270572 100270902 + 1.16667 NA intron (NM_001243270, intron 16 of 23) intron (NM_001243270, intron 16 of 23) -416551 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 301.334-7 chr7 17256287 17256589 + 1.16667 NA Intergenic Intergenic -42214 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 273.334-3 chr7 19500228 19500491 + 1.16667 NA Intergenic L1MC4|LINE|L1 205077 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 167.667-34 chr17 63114839 63115032 + 1.16667 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 148700 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 245-8 chr13 86851455 86851864 + 1.16667 NA Intergenic L1PREC2|LINE|L1 -60261 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 201.834-2 chr14 62377969 62378273 + 1.16667 NA Intergenic L1MCc|LINE|L1 -238148 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 125.167-73 chr7 24360286 24360511 + 1.16667 NA Intergenic Intergenic 76208 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 200.167-5 chr10 7760695 7760998 + 1.16667 NA intron (NM_012311, intron 11 of 12) MER44A|DNA|TcMar-Tigger 27147 NR_045609 22944 Hs.397918 NM_012311 ENSG00000151657 KIN BTCD|KIN17|Rts2 Kin17 DNA and RNA binding protein protein-coding 232.667-3 chr10 43133025 43133309 + 1.16667 NA Intergenic Intergenic -5278 NR_135077 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 261.5-10 chr18 8076464 8076805 + 1.16667 NA intron (NM_002845, intron 9 of 30) intron (NM_002845, intron 9 of 30) 290400 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 323.334-6 chr21 26429533 26430528 + 1.16667 NA intron (NR_135515, intron 1 of 3) intron (NR_135515, intron 1 of 3) 24087 NR_135515 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 177.667-57 chr5 79145939 79146272 + 1.16667 NA Intergenic Intergenic 34296 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 149.834-6 chr3 94389595 94389809 + 1.16667 NA Intergenic L1PA15|LINE|L1 326641 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 194.167-24 chr4 81133701 81133909 + 1.16667 NA intron (NM_006259, intron 14 of 18) intron (NM_006259, intron 14 of 18) 20352 NM_001282481 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 251.5-11 chr2 72304992 72305336 + 1.16667 NA intron (NR_135773, intron 19 of 21) MIR|SINE|MIR -157302 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 508 chr14 82380442 82381294 + 1.16667 NA Intergenic L1MB8|LINE|L1 -261764 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 203.167-26 chr2 192812214 192812495 + 1.16667 NA Intergenic MamGypsy2-I|LTR|Gypsy 62509 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 246.667-28 chr8 127615511 127615939 + 1.16667 NA Intergenic L2c|LINE|L2 118242 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 224.667-29 chr6 48057999 48058366 + 1.16667 NA intron (NM_207499, intron 1 of 2) MER5B|DNA|hAT-Charlie 10507 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 143.833-29 chr3 72791539 72791751 + 1.16667 NA intron (NM_018130, intron 10 of 10) intron (NM_018130, intron 10 of 10) 56800 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 205.667-41 chr22 36946080 36946340 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger -19038 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 225-40 chr9 86332865 86333161 + 1.16667 NA intron (NM_001185074, intron 6 of 19) L1MEf|LINE|L1 21397 NM_001330718 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 291.667-13 chr15 41627242 41627607 + 1.16667 NA Intergenic L1MC3|LINE|L1 -32988 NM_001164273 23269 Hs.187569 NM_001080541 ENSG00000174197 MGA MAD5|MXD5 MAX dimerization protein MGA protein-coding 145.667-49 chr2 52455008 52455152 + 1.16667 NA Intergenic MIRb|SINE|MIR 84432 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 135.334-7 chr5 67554975 67555144 + 1.16667 NA Intergenic L1MA7|LINE|L1 91730 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 123.667-47 chr2 40647093 40647311 + 1.16667 NA Intergenic Intergenic -134767 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 252.5-21 chr6 10236562 10236806 + 1.16667 NA Intergenic Intergenic -167818 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 334.334-2 chr2 203393677 203394023 + 1.16667 NA intron (NM_005759, intron 4 of 9) intron (NM_005759, intron 4 of 9) 26966 NM_001282927 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 149.5-51 chr5 10017524 10017702 + 1.16667 NA Intergenic LTR82B|LTR|ERVL -113789 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 276-7 chr14 64888793 64889286 + 1.16667 NA Intergenic Intergenic -9132 NM_001355436 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 120.667-103 chr7 40077057 40077269 + 1.16667 NA intron (NM_003718, intron 9 of 13) intron (NM_003718, intron 9 of 13) 57459 NM_138701 136647 Hs.654989 NM_138701 ENSG00000168303 MPLKIP ABHS|C7orf11|ORF20|TTD4 M-phase specific PLK1 interacting protein protein-coding 138-17 chr10 115012288 115012417 + 1.16667 NA Intergenic Intergenic 17695 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 205-36 chr5 89902632 89902957 + 1.16667 NA Intergenic AluY|SINE|Alu 113926 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 114.5-6 chr1 158686359 158686457 + 1.16667 NA intron (NM_003126, intron 1 of 51) intron (NM_003126, intron 1 of 51) 307 NM_003126 6708 Hs.119825 NM_003126 ENSG00000163554 SPTA1 EL2|HPP|HS3|SPH3|SPTA spectrin alpha, erythrocytic 1 protein-coding 208.167-13 chr2 81678864 81679173 + 1.16667 NA Intergenic L1MD1|LINE|L1 -212072 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 140.167-50 chr4 152273634 152273801 + 1.16667 NA Intergenic Intergenic -63938 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 FBXW7-AS1 DEAR|DEspR FBXW7 antisense RNA 1 ncRNA 181-6 chr10 58394063 58394486 + 1.16667 NA intron (NR_073073, intron 6 of 7) intron (NR_073073, intron 6 of 7) 8864 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 120-35 chr14 70953920 70954071 + 1.16667 NA intron (NM_014982, intron 2 of 35) L1ME3D|LINE|L1 46536 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 186.334 chr10 114870333 114870640 + 1.16667 NA intron (NM_001135051, intron 16 of 16) intron (NM_001135051, intron 16 of 16) 48706 NM_020940 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 255.667-18 chr3 37622987 37623261 + 1.16667 NA intron (NM_002207, intron 15 of 27) intron (NM_002207, intron 15 of 27) 170983 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 172.667-19 chr13 46210305 46210541 + 1.16667 NA Intergenic Intergenic -1505 NM_001282460 220416 Hs.267765 NM_001024609 ENSG00000173988 LRRC63 - leucine rich repeat containing 63 protein-coding 198.333-45 chr8 115042875 115043151 + 1.16667 NA Intergenic L1PB1|LINE|L1 625000 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 174-26 chr16 49840219 49840383 + 1.16667 NA intron (NM_001271620, intron 1 of 7) MER103C|DNA|hAT-Charlie -17563 NM_015069 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 366.167 chr10 63814775 63815143 + 1.16667 NA Intergenic L1PREC2|LINE|L1 -293069 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 271.167-7 chr12 62926860 62927163 + 1.16667 NA intron (NM_020700, intron 1 of 9) L1ME4a|LINE|L1 8139 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 191.167-23 chr5 99852097 99852381 + 1.16667 NA Intergenic L1MA10|LINE|L1 318249 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 185.833-27 chr4 31603323 31603574 + 1.16667 NA Intergenic Intergenic 96904 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 415.668 chr2 88212770 88213171 + 1.16667 NA Intergenic Intergenic 39831 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 245.334-3 chr17 73634556 73634821 + 1.16667 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 9757 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 348.167-2 chr12 111271165 111271676 + 1.16667 NA intron (NM_015267, intron 4 of 21) intron (NM_015267, intron 4 of 21) -32722 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 268-10 chr2 78940771 78941195 + 1.16667 NA Intergenic MLT1F2|LTR|ERVL-MaLR -84719 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 278.167-13 chr9 73943889 73944180 + 1.16667 NA Intergenic L1MEd|LINE|L1 -427497 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 262.834 chr15 67625578 67625904 + 1.16667 NA intron (NM_001206804, intron 8 of 21) intron (NM_001206804, intron 8 of 21) 76647 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 195.667-31 chr4 125219230 125219410 + 1.16667 NA Intergenic Intergenic -97092 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 203-34 chr5 66083262 66083572 + 1.16667 NA TTS (NM_001253698) TTS (NM_001253698) -60883 NM_001323534 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 299.501 chr3 76065034 76065324 + 1.16667 NA Intergenic Intergenic -279630 NM_001290210 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 154.833-63 chr9 7995373 7995610 + 1.16667 NA Intergenic LTR78B|LTR|ERV1 -195713 NM_001318059 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 173.167-27 chr3 195194993 195195230 + 1.16667 NA intron (NM_152531, intron 2 of 3) intron (NM_152531, intron 2 of 3) 47240 NR_102710 101410543 Hs.658170 NR_102710 ENSG00000230266 XXYLT1-AS2 - XXYLT1 antisense RNA 2 ncRNA 271.001 chr8 39048351 39048770 + 1.16667 NA intron (NR_027638, intron 12 of 20) L1MB1|LINE|L1 -29875 NR_145988 109616979 NR_145736 ENSG00000207199 SNORD38D - small nucleolar RNA, C/D box 38D snoRNA 265.334 chr1 22132118 22132509 + 1.16667 NA intron (NM_030761, intron 1 of 4) intron (NM_030761, intron 1 of 4) 10784 NM_030761 54361 Hs.25766 NM_030761 ENSG00000162552 WNT4 SERKAL|WNT-4 Wnt family member 4 protein-coding 149.334-3 chr14 53275537 53275758 + 1.16667 NA Intergenic HERVL18-int|LTR|ERVL 122293 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 132.5-6 chr10 65430058 65430210 + 1.16667 NA Intergenic Intergenic -141291 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 369.334 chr13 82126728 82127097 + 1.16667 NA Intergenic Intergenic -899929 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 256.5-7 chr12 95073484 95073744 + 1.16667 NA promoter-TSS (NM_003297) promoter-TSS (NM_003297) 4 NM_001127362 7181 Hs.108301 NM_003297 ENSG00000120798 NR2C1 TR2 nuclear receptor subfamily 2 group C member 1 protein-coding 204.834-8 chr6 66329122 66329448 + 1.16667 NA Intergenic AluSc|SINE|Alu 541406 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 230.667-24 chr5 113886499 113886829 + 1.16667 NA Intergenic Intergenic 372970 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 221.667-36 chr7 152402736 152403030 + 1.16667 NA intron (NM_170606, intron 1 of 58) HY1|scRNA|scRNA 33120 NM_170606 58508 Hs.647120 NM_021230 ENSG00000055609 KMT2C HALR|KLEFS2|MLL3 lysine methyltransferase 2C protein-coding 465 chr20 10374898 10375469 + 1.16667 NA Intergenic MER57B1|LTR|ERV1 56742 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 256.334-2 chr14 52450508 52450782 + 1.16667 NA intron (NM_001160047, intron 18 of 20) L1PB1|LINE|L1 101860 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 213.334-2 chr13 20863151 20863360 + 1.16667 NA intron (NM_022459, intron 2 of 22) intron (NM_022459, intron 2 of 22) 39519 NM_022459 64328 Hs.507452 NM_022459 ENSG00000132953 XPO4 exp4 exportin 4 protein-coding 144.334-5 chr5 134251720 134252057 + 1.16667 NA Intergenic Intergenic -25815 NM_002715 5515 Hs.105818 NM_002715 ENSG00000113575 PPP2CA NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C protein phosphatase 2 catalytic subunit alpha protein-coding 211.834-3 chr2 115408714 115408981 + 1.16667 NA intron (NM_001321912, intron 4 of 25) L1M4|LINE|L1 65032 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 124.667-63 chr2 186220763 186220932 + 1.16667 NA Intergenic LTR16B2|LTR|ERVL -134530 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 125.167-12 chr10 64743600 64743750 + 1.16667 NA Intergenic Intergenic -81853 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 196.167-13 chr14 55447644 55447915 + 1.16667 NA Intergenic AluSx|SINE|Alu -7234 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 228.334-6 chr4 38625077 38625285 + 1.16667 NA non-coding (NR_026804, exon 6 of 8) non-coding (NR_026804, exon 6 of 8) -39018 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 147.167-50 chr5 119496116 119496345 + 1.16667 NA intron (NM_001199291, intron 12 of 24) LTR37A|LTR|ERV1 43733 NM_001199291 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 198.334 chr17 70052485 70052907 + 1.16667 NA intron (NR_104130, intron 1 of 1) L1MC1|LINE|L1 1425 NR_104130 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 265-12 chr18 2281258 2281515 + 1.16667 NA Intergenic Intergenic 290119 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 176.5-46 chr3 137354667 137354913 + 1.16667 NA Intergenic L1MB8|LINE|L1 396807 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 327.501-2 chr4 124796548 124796852 + 1.16667 NA Intergenic Intergenic -83968 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 137.5-3 chr1 66024391 66024594 + 1.16667 NA intron (NM_001037340, intron 1 of 14) L3|LINE|CR1 26226 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 116-32 chr15 95149880 95150060 + 1.16667 NA Intergenic Intergenic 177130 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 294.334-4 chr3 4566094 4566515 + 1.16667 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 72956 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 151-56 chr4 99511524 99511691 + 1.16667 NA intron (NM_032149, intron 1 of 8) MIR3|SINE|MIR 586 NM_032149 84103 Hs.97501 NM_032149 ENSG00000138813 C4orf17 - chromosome 4 open reading frame 17 protein-coding 331.333-2 chr10 104135219 104135758 + 1.16667 NA intron (NM_025145, intron 34 of 37) L1MB5|LINE|L1 13317 NM_001002759 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 152.167-12 chr11 25354249 25354549 + 1.16667 NA Intergenic L2c|LINE|L2 -834724 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 242.334-2 chr17 73404343 73404586 + 1.16667 NA intron (NM_001144952, intron 18 of 44) MIRb|SINE|MIR -92463 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 150.167-45 chr4 41888260 41888409 + 1.16667 NA Intergenic Intergenic -5723 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 251.5-20 chr7 23019189 23019473 + 1.16667 NA Intergenic Intergenic -5201 NM_001363466 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 163.667-24 chr14 71399369 71399657 + 1.16667 NA intron (NM_001354285, intron 2 of 24) AluJr4|SINE|Alu 1176 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 433.501 chr4 87092074 87092656 + 1.16667 NA intron (NM_005935, intron 6 of 19) intron (NM_005935, intron 6 of 19) 85364 NM_005935 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 172.167-3 chr1 114552885 114553079 + 1.16667 NA Intergenic AluJb|SINE|Alu 28633 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 146-51 chr3 83820743 83820890 + 1.16667 NA Intergenic Intergenic 1048759 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 137.667-12 chr10 60553452 60554022 + 1.16667 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 19219 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 268.501 chr7 103758716 103759019 + 1.16667 NA intron (NM_005045, intron 4 of 64) intron (NM_005045, intron 4 of 64) 230649 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 162.167-48 chr7 8446355 8446638 + 1.16667 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 12887 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 150.667-41 chr17 48260975 48261155 + 1.16667 NA intron (NM_001075099, intron 4 of 12) L2c|LINE|L2 -33282 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 176.5-51 chr4 54489637 54489896 + 1.16667 NA Intergenic Intergenic 117365 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 199.834-4 chr21 30504624 30504835 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -2588 NM_181611 337972 Hs.553694 NM_181611 ENSG00000186977 KRTAP19-5 KAP19.5 keratin associated protein 19-5 protein-coding 281.5-3 chr2 123510662 123511216 + 1.16667 NA Intergenic L1ME1|LINE|L1 -437458 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 203-14 chr16 3498960 3499223 + 1.16667 NA Intergenic L1M4|LINE|L1 -1913 NM_001330454 23059 Hs.155995 NM_015041 ENSG00000103351 CLUAP1 CFAP22|FAP22|IFT38 clusterin associated protein 1 protein-coding 179.667-41 chr5 66360556 66360756 + 1.16667 NA Intergenic MIR|SINE|MIR 150948 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 148.167-31 chr17 57507774 57507988 + 1.16667 NA intron (NM_001322250, intron 6 of 13) FLAM_C|SINE|Alu 15716 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 266.834 chr1 41191732 41191971 + 1.16667 NA intron (NM_001172218, intron 1 of 15) intron (NM_001172218, intron 1 of 15) -28834 NM_001172221 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 228.167-3 chr12 10449831 10450194 + 1.16667 NA intron (NM_213658, intron 4 of 7) intron (NM_213658, intron 4 of 7) 3365 NM_007328 3821 Hs.512576 NM_002259 ENSG00000134545 KLRC1 CD159A|NKG2|NKG2A killer cell lectin like receptor C1 protein-coding 281.667-14 chr8 131412925 131413382 + 1.16667 NA Intergenic Intergenic -372244 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 137.167-2 chr1 220500958 220501161 + 1.16667 NA Intergenic Intergenic -27077 NM_018650 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 364.666-5 chr5 93041343 93041917 + 1.16667 NA Intergenic L1PB4|LINE|L1 529713 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 271-17 chr8 131284502 131284962 + 1.16667 NA Intergenic Intergenic -243823 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 344.167-2 chr18 70720923 70721240 + 1.16667 NA Intergenic Intergenic -70127 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 188.667-27 chr2 24349960 24350316 + 1.16667 NA intron (NM_001348182, intron 1 of 38) Charlie20a|DNA|hAT-Charlie 10398 NM_147152 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 239.834 chr12 17126083 17126429 + 1.16667 NA Intergenic Intergenic 137509 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 202.334-2 chr14 46237352 46237587 + 1.16667 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 173310 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 157.5-59 chr6 64320873 64321063 + 1.16667 NA intron (NM_001292009, intron 29 of 43) HAL1|LINE|L1 514132 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 266.833 chr1 175738462 175738784 + 1.16667 NA intron (NM_003285, intron 1 of 22) L1MB3|LINE|L1 4972 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 181.5-13 chr12 38926173 38926541 + 1.16667 NA Intergenic Intergenic -20766 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 272-16 chr8 106301453 106301871 + 1.16667 NA intron (NM_018002, intron 1 of 15) MIR|SINE|MIR 31484 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 156.333-26 chr13 38676443 38676683 + 1.16667 NA intron (NR_126377, intron 2 of 2) intron (NR_126377, intron 2 of 2) 10112 NR_126377 101929121 Hs.618449 NR_126377 LINC00437 TCONS_00021639 long intergenic non-protein coding RNA 437 ncRNA 180.833-27 chr3 52730515 52730810 + 1.16667 NA intron (NM_003157, intron 15 of 15) L1M5|LINE|L1 24556 NM_014041 28972 Hs.11125 NM_014041 ENSG00000114902 SPCS1 HSPC033|SPC1|SPC12|YJR010C-A signal peptidase complex subunit 1 protein-coding 350.667 chr1 118550338 118550872 + 1.16667 NA Intergenic L1PA14|LINE|L1 -365377 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 199.334-9 chr5 132470384 132470625 + 1.16667 NA intron (NR_161242, intron 3 of 3) intron (NR_161242, intron 3 of 3) 20269 NM_001354924 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 272.5-13 chr22 21835625 21836022 + 1.16667 NA intron (NM_002745, intron 1 of 8) intron (NM_002745, intron 1 of 8) 31857 NM_138957 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 197.834-5 chr20 24032506 24032812 + 1.16667 NA Intergenic Intergenic -43880 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 257.167-2 chr17 52162078 52162550 + 1.16667 NA Intergenic Intergenic -2297 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 378 chr14 43511888 43512414 + 1.16667 NA Intergenic L1MC3|LINE|L1 995132 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 124-57 chr2 176700904 176701101 + 1.16667 NA Intergenic L1MEf|LINE|L1 63248 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 217-8 chr17 48006353 48006643 + 1.16667 NA Intergenic L3|LINE|CR1 -26384 NR_162100 113218499 NR_162100 MIR10226 - microRNA 10226 ncRNA 147.167-27 chr18 5210179 5210383 + 1.16667 NA Intergenic Intergenic -12529 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 129.834-5 chr2 24070205 24070338 + 1.16667 NA intron (NM_016047, intron 2 of 3) intron (NM_016047, intron 2 of 3) 6055 NM_016047 51639 Hs.177861 NM_016047 ENSG00000115128 SF3B6 CGI-110|HSPC175|Ht006|P14|SAP14|SAP14a|SF3B14|SF3B14a splicing factor 3b subunit 6 protein-coding 251.667-10 chr22 38637108 38637402 + 1.16667 NA intron (NM_001013647, intron 5 of 16) L1ME4c|LINE|L1 19137 NM_001291030 646851 Hs.542707 NM_001013647 ENSG00000184949 FAM227A - family with sequence similarity 227 member A protein-coding 322.833-6 chr7 71917905 71918497 + 1.16667 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 419190 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 302-3 chr1 111069965 111070425 + 1.16667 NA Intergenic L1PA15|LINE|L1 -69188 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 138.667-37 chr16 55037657 55037849 + 1.16667 NA Intergenic Intergenic 106554 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 191.167-22 chr5 76158477 76158683 + 1.16667 NA intron (NM_014979, intron 2 of 12) L1MB8|LINE|L1 75197 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 168.167-52 chr7 24943375 24943599 + 1.16667 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) 36691 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 255.167-4 chr15 68518672 68519174 + 1.16667 NA intron (NM_001324014, intron 1 of 12) intron (NM_001324014, intron 1 of 12) 550 NM_001324014 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 170.5-60 chr6 49104313 49104713 + 1.16667 NA Intergenic MIRb|SINE|MIR 358740 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 327.667-4 chr18 75014746 75015232 + 1.16667 NA intron (NM_017757, intron 7 of 7) intron (NM_017757, intron 7 of 7) 190524 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 117.833-11 chr11 10207755 10207937 + 1.16667 NA intron (NM_030962, intron 1 of 39) intron (NM_030962, intron 1 of 39) 86361 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 236.667-37 chr7 98325843 98326263 + 1.16667 NA intron (NM_018842, intron 3 of 13) AluJb|SINE|Alu 44367 NM_001159491 25798 Hs.567438 NM_015379 ENSG00000164713 BRI3 I3 brain protein I3 protein-coding 187.167-6 chr11 28805208 28805425 + 1.16667 NA Intergenic Intergenic -327768 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 198.5-40 chr7 31939130 31939438 + 1.16667 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 131123 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 381.167 chr1 181544909 181545615 + 1.16667 NA intron (NM_001205293, intron 3 of 47) intron (NM_001205293, intron 3 of 47) 61745 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 233-4 chr10 24438693 24439021 + 1.16667 NA intron (NM_019590, intron 5 of 20) intron (NM_019590, intron 5 of 20) -10557 NM_001321681 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 309.001-2 chr5 132049603 132049908 + 1.16667 NA Intergenic Intergenic -10900 NM_000588 3562 Hs.694 NM_000588 ENSG00000164399 IL3 IL-3|MCGF|MULTI-CSF interleukin 3 protein-coding 369.5 chr4 152317084 152317729 + 1.16667 NA Intergenic Intergenic -20249 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 FBXW7-AS1 DEAR|DEspR FBXW7 antisense RNA 1 ncRNA 150.5-24 chr14 61114236 61114432 + 1.16667 NA Intergenic Intergenic -132644 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 153.5-77 chr8 98929991 98930538 + 1.16667 NA intron (NM_001256312, intron 1 of 12) intron (NM_001256312, intron 1 of 12) 12346 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 181-5 chr1 207982767 207982975 + 1.16667 NA Intergenic Intergenic -71746 NM_001025109 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 171.5-65 chr9 93412729 93412990 + 1.16667 NA Intergenic L1M3c|LINE|L1 38749 NM_001322224 158293 Hs.350364 NM_198841 ENSG00000188938 FAM120AOS C9orf10OS family with sequence similarity 120A opposite strand protein-coding 207.334-5 chr4 56219090 56219456 + 1.16667 NA intron (NM_020722, intron 2 of 10) intron (NM_020722, intron 2 of 10) 49078 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 326.167-9 chr7 109563660 109564050 + 1.16667 NA Intergenic Intergenic 396358 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 259.667-21 chr4 72780284 72780656 + 1.16667 NA Intergenic Intergenic -211249 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 190.334-6 chr8 88880502 88880837 + 1.16667 NA Intergenic Intergenic -553186 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 184-25 chr2 107322059 107322331 + 1.16667 NA intron (NR_049853, intron 1 of 3) intron (NR_049853, intron 1 of 3) 27330 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 207.834-8 chr5 66687769 66688009 + 1.16667 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) 91496 NM_001290228 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 205-12 chr18 9151494 9151838 + 1.16667 NA intron (NM_001204056, intron 1 of 11) intron (NM_001204056, intron 1 of 11) 14103 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 163.5-42 chr22 24291771 24291992 + 1.16667 NA intron (NM_015330, intron 2 of 16) (TGT)n|Simple_repeat|Simple_repeat 21050 NM_015330 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 228.5-18 chr3 45509289 45509606 + 1.16667 NA promoter-TSS (NR_048543) promoter-TSS (NR_048543) 98 NR_048543 100885795 Hs.641094 NR_048543 LARS2-AS1 - LARS2 antisense RNA 1 ncRNA 171.167-16 chr12 33378585 33378762 + 1.16667 NA intron (NM_198992, intron 6 of 6) intron (NM_198992, intron 6 of 6) 61146 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 380.667 chr11 9070920 9071488 + 1.16667 NA intron (NM_001367977, intron 4 of 22) intron (NM_001367977, intron 4 of 22) 19175 NR_049874 100847015 NR_049874 ENSG00000264984 MIR5691 - microRNA 5691 ncRNA 276-13 chr5 147051831 147052305 + 1.16667 NA intron (NM_181677, intron 2 of 10) intron (NM_181677, intron 2 of 10) 4069 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 130.5-44 chr2 69981325 69981447 + 1.16667 NA intron (NR_033872, intron 9 of 10) L1ME4a|LINE|L1 -19121 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase retroviral like 1 protein-coding 229.5-10 chr13 89099486 89099961 + 1.16667 NA Intergenic Intergenic -135568 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 254.5-2 chr14 60675038 60675389 + 1.16667 NA Intergenic Intergenic -25736 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 148.667-84 chr9 31609868 31610267 + 1.16667 NA Intergenic L2b|LINE|L2 -228577 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 295.667-11 chr8 111707682 111708058 + 1.16667 NA Intergenic Intergenic 331231 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 173.334-5 chr5 61587453 61587711 + 1.16667 NA Intergenic MLT1J|LTR|ERVL-MaLR -50178 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 281.834-3 chr2 79561865 79562274 + 1.16667 NA intron (NM_001282598, intron 1 of 17) L1MB7|LINE|L1 38886 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 215.5-11 chr14 50011718 50012054 + 1.16667 NA intron (NR_131171, intron 6 of 8) L2c|LINE|L2 -4366 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 148.5-25 chr15 80672403 80672621 + 1.16667 NA Intergenic Intergenic -22798 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 296.333-14 chrX 18851810 18852340 + 1.16667 NA Intergenic MIRb|SINE|MIR -38221 NR_029379 100132163 Hs.607628 NR_029379 PHKA2-AS1 - PHKA2 antisense RNA 1 ncRNA 161.167-20 chr15 26405202 26405435 + 1.16667 NA Intergenic Intergenic 223772 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 127.334 chr1 57248074 57248483 + 1.16667 NA intron (NM_001353980, intron 5 of 5) MER2|DNA|TcMar-Tigger 174834 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 220.334-12 chr9 14358126 14358363 + 1.16667 NA intron (NM_001369458, intron 1 of 11) intron (NM_001369458, intron 1 of 11) -35857 NM_001369478 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 194-48 chr5 156964999 156965220 + 1.16667 NA Intergenic AluJb|SINE|Alu -1883 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 399.5 chr4 189208040 189208739 + 1.16667 NA Intergenic Intergenic 431732 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 301.833-3 chr3 74537670 74538168 + 1.16667 NA Intergenic Intergenic -16779 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 149.834-2 chr11 28914915 28915067 + 1.16667 NA Intergenic Intergenic -437443 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 146.5-97 chr9 128580465 128580700 + 1.16667 NA intron (NM_003127, intron 10 of 55) intron (NM_003127, intron 10 of 55) 27995 NM_001195532 6709 Hs.372331 NM_003127 ENSG00000197694 SPTAN1 EIEE5|NEAS|SPTA2 spectrin alpha, non-erythrocytic 1 protein-coding 154.833-28 chr2 107235404 107235684 + 1.16667 NA intron (NR_049853, intron 2 of 3) L1PA8|LINE|L1 113981 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 247.167-16 chr4 36742529 36742913 + 1.16667 NA Intergenic L1MA9|LINE|L1 -100821 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 210.667-15 chr14 53019219 53019471 + 1.16667 NA Intergenic MER34-int|LTR|ERV1 -68248 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 182.334 chr10 13883121 13883554 + 1.16667 NA intron (NM_018027, intron 2 of 24) AluSx|SINE|Alu 88559 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 161.333-65 chr6 38821894 38822071 + 1.16667 NA intron (NM_001371, intron 25 of 91) intron (NM_001371, intron 25 of 91) 106671 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 132-95 chr8 106695126 106695336 + 1.16667 NA intron (NM_181354, intron 5 of 13) L1MEc|LINE|L1 -30876 NM_001198535 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 210.834-2 chr2 52509455 52509702 + 1.16667 NA Intergenic Intergenic 138930 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 307.834 chr10 50468400 50468818 + 1.16667 NA intron (NM_147156, intron 3 of 10) intron (NM_147156, intron 3 of 10) 155347 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 214.834-8 chr9 14150977 14151261 + 1.16667 NA intron (NR_161384, intron 3 of 7) MIR|SINE|MIR 29683 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 160.834-3 chr20 60567163 60567381 + 1.16667 NA Intergenic Intergenic 2710 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 253.334-3 chr20 59380833 59381086 + 1.16667 NA Intergenic Intergenic 80348 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 150.834-2 chr16 58606843 58606997 + 1.16667 NA intron (NM_206999, intron 1 of 30) intron (NM_206999, intron 1 of 30) 22906 NM_001265612 23019 Hs.460923 NM_016284 ENSG00000125107 CNOT1 AD-005|CDC39|NOT1|NOT1H CCR4-NOT transcription complex subunit 1 protein-coding 253-19 chr5 111353666 111353968 + 1.16667 NA intron (NM_001323376, intron 2 of 8) L1M3|LINE|L1 129433 NM_001323377 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 136.667-62 chr3 74437723 74437952 + 1.16667 NA intron (NM_020872, intron 3 of 21) intron (NM_020872, intron 3 of 21) 83303 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 224-33 chr6 43573425 43573754 + 1.16667 NA exon (NM_020750, exon 2 of 32) exon (NM_020750, exon 2 of 32) 2449 NM_020750 57510 Hs.203206 NM_020750 ENSG00000124571 XPO5 exp5 exportin 5 protein-coding 218-31 chr3 121892075 121892382 + 1.16667 NA Intergenic Intergenic -2173 NM_001145998 6565 Hs.518089 NM_021082 ENSG00000163406 SLC15A2 PEPT2 solute carrier family 15 member 2 protein-coding 187.667-21 chr15 65020497 65020707 + 1.16667 NA intron (NM_139242, intron 4 of 8) intron (NM_139242, intron 4 of 8) 9037 NM_139242 123263 Hs.531615 NM_139242 ENSG00000103707 MTFMT COXPD15|FMT1|MC1DN27 mitochondrial methionyl-tRNA formyltransferase protein-coding 244.834 chr15 43879453 43880122 + 1.16667 NA intron (NM_032892, intron 13 of 13) intron (NM_032892, intron 13 of 13) -1616 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1 pseudo 238.833-2 chr12 115509809 115510169 + 1.16667 NA Intergenic L1ME3A|LINE|L1 638665 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 162-27 chr16 70338476 70338705 + 1.16667 NA intron (NR_039997, intron 2 of 4) AluSz|SINE|Alu 8157 NR_039997 100506083 Hs.635008 NR_039997 ENSG00000261777 LOC100506083 - uncharacterized LOC100506083 ncRNA 145.167-8 chr10 32963383 32963530 + 1.16667 NA Intergenic Intergenic -5226 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 202.667 chr1 27958513 27958764 + 1.16667 NA promoter-TSS (NM_018053) promoter-TSS (NM_018053) -824 NM_018053 55113 Hs.55024 NM_018053 ENSG00000158156 XKR8 XRG8|hXkr8 XK related 8 protein-coding 233.667-30 chr9 86899999 86900292 + 1.16667 NA Intergenic MER11C|LTR|ERVK 47361 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 215 chr1 44196324 44196811 + 1.16667 NA Intergenic AluSq2|SINE|Alu -16904 NM_001034024 55929 Hs.8008 NM_019100 ENSG00000178028 DMAP1 DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4 DNA methyltransferase 1 associated protein 1 protein-coding 245.667-19 chr2 151016779 151017004 + 1.16667 NA Intergenic Intergenic 244972 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 115.167-7 chr1 94488300 94488488 + 1.16667 NA intron (NM_002858, intron 13 of 22) intron (NM_002858, intron 13 of 22) 53365 NM_001993 2152 Hs.62192 NM_001993 ENSG00000117525 F3 CD142|TF|TFA coagulation factor III, tissue factor protein-coding 256.5-19 chr2 179787561 179787908 + 1.16667 NA intron (NR_148056, intron 1 of 9) intron (NR_148056, intron 1 of 9) -41224 NM_001352817 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 256.333-15 chr20 59420882 59421315 + 1.16667 NA Intergenic L1ME3Cz|LINE|L1 120487 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 302.167-14 chr9 126617862 126618313 + 1.16667 NA intron (NM_001174146, intron 2 of 7) intron (NM_001174146, intron 2 of 7) 3644 NM_002316 4010 Hs.129133 NM_002316 ENSG00000136944 LMX1B LMX1.2|NPS1 LIM homeobox transcription factor 1 beta protein-coding 260.834-3 chr4 117540397 117540640 + 1.16667 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 112120 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 192.5-54 chr8 105170592 105170854 + 1.16667 NA Intergenic Tigger13a|DNA|TcMar-Tigger -147715 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 145.167-40 chr21 20753275 20753431 + 1.16667 NA intron (NR_109787, intron 6 of 6) L1PA5|LINE|L1 49755 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 254.334-4 chr2 47376793 47377254 + 1.16667 NA promoter-TSS (NR_030286) promoter-TSS (NR_030286) -652 NR_030286 693144 NR_030286 ENSG00000207923 MIR559 MIRN559|hsa-mir-559 microRNA 559 ncRNA 121.167-5 chr1 90186342 90186507 + 1.16667 NA Intergenic Intergenic 191314 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 328.001-2 chr18 61990560 61990928 + 1.16667 NA Intergenic L1MA7|LINE|L1 -97737 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 509 chr7 114802520 114803476 + 1.16667 NA Intergenic Intergenic -119156 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 167.667-53 chr22 21886878 21887067 + 1.16667 NA Intergenic L1ME1|LINE|L1 -19292 NM_002745 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 220.5-28 chr4 108679714 108680027 + 1.16667 NA Intergenic L1ME3F|LINE|L1 29271 NM_021227 58505 Hs.445803 NM_021227 ENSG00000198856 OSTC DC2 oligosaccharyltransferase complex non-catalytic subunit protein-coding 213.167-2 chr1 217188554 217188879 + 1.16667 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -51014 NM_001243511 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 211.167-28 chr5 126242923 126243187 + 1.16667 NA Intergenic (TTTCCC)n|Simple_repeat|Simple_repeat 42120 NR_105039 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 242.334-4 chr5 72576703 72577048 + 1.16667 NA intron (NR_105007, intron 1 of 2) MLT2D|LTR|ERVL 19798 NR_105008 102503427 Hs.429280 NR_105008 LOC102503427 - uncharacterized LOC102503427 ncRNA 262.334-6 chr9 31324348 31324591 + 1.16667 NA Intergenic Tigger3|DNA|TcMar-Tigger 57021 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 189.334-2 chr3 151291700 151291975 + 1.16667 NA intron (NM_053002, intron 14 of 42) intron (NM_053002, intron 14 of 42) -13295 NM_014879 9934 Hs.2465 NM_014879 ENSG00000174944 P2RY14 BPR105|GPR105|P2Y14 purinergic receptor P2Y14 protein-coding 157.834-2 chr10 34784919 34785103 + 1.16667 NA intron (NM_001184789, intron 1 of 22) intron (NM_001184789, intron 1 of 22) 30285 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 168.5-43 chr4 106866657 106866958 + 1.16667 NA Intergenic Intergenic 169506 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 240.833-12 chr18 7786275 7786596 + 1.16667 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 219119 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 275.167-12 chr5 6810082 6810485 + 1.16667 NA intron (NR_146281, intron 1 of 1) intron (NR_146281, intron 1 of 1) 14403 NR_146281 109729133 Hs.582455 NR_146281 ENSG00000251365 LINC02236 - long intergenic non-protein coding RNA 2236 ncRNA 178.833-18 chr2 56365618 56365842 + 1.16667 NA intron (NM_001348515, intron 3 of 3) L1MA8|LINE|L1 -179960 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 250.5-17 chr3 35868036 35868395 + 1.16667 NA Intergenic Intergenic 123739 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 233-8 chr11 106244531 106244880 + 1.16667 NA Intergenic Intergenic -5314 NR_120552 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 181-52 chr5 66564678 66564976 + 1.16667 NA Intergenic Intergenic -31566 NM_198828 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 197.167-37 chr3 115378560 115378817 + 1.16667 NA Intergenic L1ME3G|LINE|L1 -231400 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 220.001-4 chr8 88073159 88073398 + 1.16667 NA intron (NM_005941, intron 7 of 9) intron (NM_005941, intron 7 of 9) -199263 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 192.5-19 chr16 46602478 46602732 + 1.16667 NA intron (NM_001324318, intron 8 of 12) intron (NM_001324318, intron 8 of 12) 18774 NM_001324319 79801 Hs.123253 NM_024745 ENSG00000171241 SHCBP1 PAL SHC binding and spindle associated 1 protein-coding 222.167-8 chr12 24260491 24260821 + 1.16667 NA intron (NM_001261414, intron 4 of 16) L3|LINE|CR1 37385 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 167-41 chr4 107000064 107000328 + 1.16667 NA intron (NM_014421, intron 1 of 3) intron (NM_014421, intron 1 of 3) 36117 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 238.333-17 chr2 135540505 135540891 + 1.16667 NA intron (NM_001282799, intron 1 of 22) AluJr|SINE|Alu 9214 NM_001282799 23518 Hs.412462 NM_015361 ENSG00000048991 R3HDM1 R3HDM R3H domain containing 1 protein-coding 183-46 chr5 28525065 28525388 + 1.16667 NA Intergenic Intergenic -237561 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 133.834-6 chr5 147423083 147423244 + 1.16667 NA intron (NM_001197294, intron 2 of 13) intron (NM_001197294, intron 2 of 13) 30529 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 249.833-3 chr10 9536505 9536846 + 1.16667 NA Intergenic L1MB1|LINE|L1 -241082 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 200.667-10 chr10 66896953 66897199 + 1.16667 NA non-coding (NR_111911, exon 6 of 7) non-coding (NR_111911, exon 6 of 7) -28960 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 179.334-4 chr19 45833832 45834187 + 1.16667 NA intron (NM_004819, intron 11 of 26) AluY|SINE|Alu -18701 NM_030785 81492 Hs.146544 NM_030785 ENSG00000104941 RSPH6A RSHL1|RSP4|RSP6|RSPH4B radial spoke head 6 homolog A protein-coding 425.167 chr8 55317956 55318574 + 1.16667 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 137056 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 234-27 chr4 30599382 30599751 + 1.16667 NA Intergenic LTR82B|LTR|ERVL -120803 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 257.167-4 chr18 9250673 9251011 + 1.16667 NA intron (NM_001204056, intron 7 of 11) L2|LINE|L2 -83931 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 209-26 chr2 198698495 198698955 + 1.16667 NA Intergenic Intergenic -323628 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 255-23 chr8 123581586 123582053 + 1.16667 NA Intergenic Intergenic -40613 NM_001242463 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 314.5-12 chr6 50049520 50049997 + 1.16667 NA intron (NM_001369057, intron 1 of 1) intron (NM_001369057, intron 1 of 1) 171 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 359.667-4 chr5 52895536 52896319 + 1.16667 NA intron (NM_181501, intron 9 of 28) intron (NM_181501, intron 9 of 28) -93425 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 205-28 chr3 119857842 119858154 + 1.16667 NA intron (NM_002093, intron 10 of 11) Tigger1|DNA|TcMar-Tigger 75288 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 335.834-3 chr8 77500780 77501194 + 1.16667 NA Intergenic Intergenic 50290 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 193.834-3 chr11 101460352 101460555 + 1.16667 NA intron (NM_004621, intron 10 of 12) MER2|DNA|TcMar-Tigger 59452 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 232.167-12 chr14 50979719 50980001 + 1.16667 NA intron (NM_015163, intron 8 of 9) intron (NM_015163, intron 8 of 9) -35377 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 361.501-2 chr8 88176433 88176813 + 1.16667 NA intron (NM_005941, intron 3 of 9) L1M5|LINE|L1 150860 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 209.667-3 chr1 171569593 171569798 + 1.16667 NA intron (NM_015172, intron 23 of 33) intron (NM_015172, intron 23 of 33) -50068 NM_001368164 110806290 NM_001368164 MYOCOS - myocilin opposite strand protein-coding 301.667-2 chr10 97137470 97137886 + 1.16667 NA intron (NM_003061, intron 4 of 36) AluJb|SINE|Alu 34922 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 122.167-75 chr9 31502895 31503013 + 1.16667 NA Intergenic Intergenic -121464 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 275.667-5 chr13 87646112 87646391 + 1.16667 NA intron (NR_033829, intron 1 of 5) MSTD|LTR|ERVL-MaLR 24712 NR_033829 642345 Hs.508337 NR_033829 ENSG00000228824 MIR4500HG - MIR4500 host gene ncRNA 131.334-3 chr2 225033066 225033187 + 1.16667 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) 9342 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 228.334-5 chr21 26907381 26907650 + 1.16667 NA Intergenic Intergenic -46446 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 207.834-3 chr15 41483453 41483835 + 1.16667 NA TTS (NM_015138) TTS (NM_015138) -10230 NM_002220 3706 Hs.2722 NM_002220 ENSG00000137825 ITPKA IP3-3KA|IP3KA inositol-trisphosphate 3-kinase A protein-coding 201.833-18 chr5 172149047 172149339 + 1.16667 NA intron (NM_005990, intron 2 of 18) MIRb|SINE|MIR 39031 NM_005990 6793 Hs.744005 NM_005990 ENSG00000072786 STK10 LOK|PRO2729 serine/threonine kinase 10 protein-coding 242.834-5 chr4 39064803 39065026 + 1.16667 NA intron (NM_199039, intron 1 of 9) intron (NM_199039, intron 1 of 9) 2682 NM_199039 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 236.333-8 chr14 55228190 55228603 + 1.16667 NA Intergenic L1MB7|LINE|L1 -36811 NM_001146015 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 205.333-3 chr1 68522304 68522618 + 1.16667 NA intron (NR_110671, intron 1 of 2) intron (NR_110671, intron 1 of 2) -25379 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 204.167-30 chr6 137394242 137394764 + 1.16667 NA Intergenic Intergenic 99891 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 151.667-12 chr11 12945742 12945974 + 1.16667 NA Intergenic MIRb|SINE|MIR 43690 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 154.334-2 chr1 242771564 242771714 + 1.16667 NA Intergenic Intergenic -246942 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 145.833-7 chr1 216777653 216777876 + 1.16667 NA intron (NM_001243513, intron 1 of 7) MamRep1527|LTR|LTR 27621 NM_001243514 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 383.001 chr8 114654546 114655353 + 1.16667 NA Intergenic L1MD2|LINE|L1 1013064 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 195.167-13 chr17 52182408 52182657 + 1.16667 NA Intergenic Intergenic -22515 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 274.5 chr10 83439078 83439331 + 1.16667 NA Intergenic MER101-int|LTR|ERV1 237885 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 130.667-57 chr3 167771588 167772023 + 1.16667 NA intron (NM_005025, intron 1 of 8) intron (NM_005025, intron 1 of 8) 36082 NM_005025 5274 Hs.478153 NM_005025 ENSG00000163536 SERPINI1 PI12|neuroserpin serpin family I member 1 protein-coding 123.834-5 chr4 72279207 72279329 + 1.16667 NA Intergenic Intergenic 240136 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 344.667-4 chr5 109356227 109356779 + 1.16667 NA intron (NM_014819, intron 6 of 9) Tigger4a|DNA|TcMar-Tigger -30134 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 181.667-69 chr8 119778748 119778950 + 1.16667 NA intron (NM_003184, intron 17 of 25) intron (NM_003184, intron 17 of 25) 53992 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 194.167-40 chr8 82567114 82567427 + 1.16667 NA Intergenic L1MC5|LINE|L1 -344834 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 411.333-3 chr7 27518789 27519250 + 1.16667 NA Intergenic Intergenic -96955 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 253.667-6 chr16 8359055 8359284 + 1.16667 NA Intergenic Intergenic 230669 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 153.334-9 chrX 84308368 84308531 + 1.16667 NA Intergenic Intergenic -82621 NR_031690 100302191 NR_031690 ENSG00000221494 MIR548I4 MIR548I-4|MIRN548I4|hsa-mir-548i-4 microRNA 548i-4 ncRNA 199.5-2 chr1 177668906 177669092 + 1.16667 NA Intergenic MLT1J2|LTR|ERVL-MaLR -31525 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 144-33 chr2 15080736 15080931 + 1.16667 NA Intergenic MLT1H1|LTR|ERVL-MaLR 448116 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 330.501 chr12 8859513 8859816 + 1.16667 NA intron (NM_001282424, intron 15 of 24) AluSz|SINE|Alu 14660 NM_001282424 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 274.5-19 chr8 117306115 117306501 + 1.16667 NA Intergenic Intergenic 171313 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 359.667-5 chr8 24688962 24689530 + 1.16667 NA Intergenic MLT2B3|LTR|ERVL -140628 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 154.5-32 chr18 74617845 74618040 + 1.16667 NA Intergenic L1MC4|LINE|L1 -13021 NM_017757 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 142.5-72 chr9 27627586 27627824 + 1.16667 NA Intergenic Intergenic -53839 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 281.5-12 chrX 63948655 63949055 + 1.16667 NA Intergenic L1MB3|LINE|L1 -162768 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 265.834-2 chr8 99363890 99364414 + 1.16667 NA intron (NM_017890, intron 19 of 61) L1M1|LINE|L1 172578 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 144.333-59 chr3 61565179 61565374 + 1.16667 NA intron (NM_002841, intron 1 of 29) intron (NM_002841, intron 1 of 29) 3705 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 193-48 chr9 125561178 125561466 + 1.16667 NA intron (NM_001006619, intron 5 of 10) intron (NM_001006619, intron 5 of 10) 145886 NM_001006617 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g MAPK associated protein 1 protein-coding 134-40 chr14 40965415 40965607 + 1.16667 NA intron (NR_109758, intron 2 of 3) L1ME3D|LINE|L1 10800 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 170.5-5 chr1 187969263 187969467 + 1.16667 NA Intergenic AluSx1|SINE|Alu 525737 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 155.334-4 chr22 24721006 24721205 + 1.16667 NA intron (NM_001008496, intron 19 of 20) L1MEd|LINE|L1 -43396 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 267.167-9 chr14 55904213 55904640 + 1.16667 NA Intergenic Intergenic -107752 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 163.834 chr1 179966986 179967167 + 1.16667 NA intron (NM_014810, intron 1 of 37) MER57B2|LTR|ERV1 12266 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 177.167-26 chr3 106888918 106889249 + 1.16667 NA Intergenic Intergenic 351555 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 160.167-26 chr2 100954781 100954953 + 1.16667 NA intron (NM_002518, intron 7 of 20) (TTTTTTTGT)n|Simple_repeat|Simple_repeat 22294 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 422.501-2 chr8 119754097 119754866 + 1.16667 NA intron (NM_003184, intron 22 of 25) AluSg|SINE|Alu 78360 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 129-31 chr13 54758952 54759158 + 1.16667 NA Intergenic (CCTCTG)n|Simple_repeat|Simple_repeat -415399 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 134-16 chr10 32424788 32425023 + 1.16667 NA Intergenic L1MEc|LINE|L1 21151 NR_120660 101929431 Hs.639819 NR_120660 LOC101929431 - uncharacterized LOC101929431 ncRNA 260-9 chr14 55953181 55953605 + 1.16667 NA Intergenic Intergenic -156719 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 225.667-16 chr2 114088963 114089428 + 1.16667 NA Intergenic Intergenic -109211 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 228.167-5 chr12 52066057 52066430 + 1.16667 NA Intergenic MLT2B4|LTR|ERVL -3731 NM_021934 60673 Hs.9911 NM_021934 ENSG00000123395 ATG101 C12orf44 autophagy related 101 protein-coding 150.167-48 chr4 99541818 99542091 + 1.16667 NA exon (NM_032149, exon 9 of 9) exon (NM_032149, exon 9 of 9) 21769 NM_152292 93587 Hs.380412 NM_152292 ENSG00000145331 TRMT10A HEL-S-88|MSSGM|MSSGM1|RG9MTD2|TRM10 tRNA methyltransferase 10A protein-coding 142.667-61 chr20 62616285 62616423 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -26149 NM_016354 28231 Hs.235782 NM_016354 ENSG00000101187 SLCO4A1 OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12 solute carrier organic anion transporter family member 4A1 protein-coding 396.334-3 chr7 82468631 82469140 + 1.16667 NA Intergenic Intergenic -24929 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 194.833-28 chr7 84505032 84505259 + 1.16667 NA Intergenic Intergenic -27331 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 273.833-11 chr5 84996646 84997111 + 1.16667 NA Intergenic Intergenic -611998 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 142.167-41 chr2 155060909 155061281 + 1.16667 NA Intergenic MLT2B1|LTR|ERVL 362400 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 276.5-7 chr2 95315107 95315400 + 1.16667 NA intron (NM_013434, intron 2 of 8) intron (NM_013434, intron 2 of 8) 17906 NM_013434 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 213.667-7 chr12 86210189 86210386 + 1.16667 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) 46104 NM_001351282 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 240.167-3 chr1 225192656 225192895 + 1.16667 NA exon (NM_001367479, exon 38 of 86) exon (NM_001367479, exon 38 of 86) 235263 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 175.833-29 chr22 32565283 32565552 + 1.16667 NA intron (NM_003490, intron 7 of 13) MER33|DNA|hAT-Charlie 90180 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 162.834-2 chr20 60857012 60857175 + 1.16667 NA Intergenic Intergenic -221971 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 208.5-6 chr1 172175295 172175702 + 1.16667 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -30663 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 333-5 chr4 99159372 99159918 + 1.16667 NA TTS (NR_028270) TTS (NR_028270) 2002 NR_028270 359806 Hs.537400 NR_028270 PCNAP1 p1PCNA proliferating cell nuclear antigen pseudogene 1 pseudo 452.5-3 chr2 201609051 201609488 + 1.16667 NA intron (NM_001168221, intron 1 of 15) L1M2|LINE|L1 9909 NM_152525 151254 Hs.335788 NM_152525 ENSG00000155754 C2CD6 ALS2CR11 C2 calcium dependent domain containing 6 protein-coding 187.334-4 chr2 202123881 202124202 + 1.16667 NA intron (NM_001277372, intron 11 of 23) AluSx1|SINE|Alu -6983 NR_135244 729224 Hs.623895 NR_135243 KIAA2012-AS1 - KIAA2012 antisense RNA 1 ncRNA 168.667-70 chr6 159353842 159354060 + 1.16667 NA Intergenic Intergenic -29580 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 295.167-10 chr5 51288217 51288514 + 1.16667 NA Intergenic Intergenic 94967 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 287-13 chrX 136604654 136605081 + 1.16667 NA Intergenic L2b|LINE|L2 -34676 NR_038462 100128420 Hs.152595 NR_038461 ENSG00000233093 LINC00892 - long intergenic non-protein coding RNA 892 ncRNA 231.833-8 chr20 12625890 12626351 + 1.16667 NA Intergenic L1MA9|LINE|L1 310843 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 135.5-66 chr6 55254451 55254731 + 1.16667 NA intron (NM_001526, intron 3 of 7) intron (NM_001526, intron 3 of 7) -72878 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 118.833-55 chr3 116308043 116308171 + 1.16667 NA intron (NM_001318915, intron 1 of 8) L2c|LINE|L2 -51917 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 117.167-63 chr3 88756166 88756294 + 1.16667 NA Intergenic Intergenic -351391 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 279.167-7 chr18 25768493 25768784 + 1.16667 NA Intergenic Intergenic 321975 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 158.5-26 chr16 11738543 11738883 + 1.16667 NA intron (NR_136673, intron 1 of 9) intron (NR_136673, intron 1 of 9) 4144 NM_001324025 51061 Hs.313847 NM_015914 ENSG00000153066 TXNDC11 EFP1 thioredoxin domain containing 11 protein-coding 215.5-31 chr4 101737660 101737911 + 1.16667 NA Intergenic Intergenic -52822 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 154.667-64 chr7 9328196 9328363 + 1.16667 NA Intergenic Intergenic -305991 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 157.167-48 chr5 22357004 22357274 + 1.16667 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -143289 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 377.833-2 chr1 229716294 229716802 + 1.16667 NA Intergenic L1ME4c|LINE|L1 90301 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 262.5-11 chr21 17874547 17874987 + 1.16667 NA intron (NR_024354, intron 1 of 2) ERVL-B4-int|LTR|ERVL 10841 NR_024354 54075 Hs.404306 NR_024354 CHODL-AS1 C21orf39|NCRNA00157 CHODL antisense RNA 1 ncRNA 148.5-7 chr1 207106915 207107085 + 1.16667 NA intron (NM_000715, intron 1 of 11) L2c|LINE|L2 2767 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 317.167-12 chr9 79307622 79308074 + 1.16667 NA Intergenic LTR85a|LTR|Gypsy? -162182 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 234.5-23 chr4 45723413 45723749 + 1.16667 NA Intergenic L1MA3|LINE|L1 400473 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 120.333-5 chr1 60912118 60912239 + 1.16667 NA Intergenic Intergenic 58598 NR_110618 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 376.5-8 chr2 162106388 162107021 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -7737 NR_110255 101929532 Hs.639883 NR_110255 ENSG00000236841 LOC101929532 - uncharacterized LOC101929532 ncRNA 134.167-14 chr10 123005427 123005588 + 1.16667 NA intron (NR_073478, intron 1 of 3) intron (NR_073478, intron 1 of 3) 3180 NM_001271840 64376 Hs.501289 NM_001271840 ENSG00000095574 IKZF5 PEGASUS|ZNFN1A5 IKAROS family zinc finger 5 protein-coding 274.334-8 chr4 107542808 107543096 + 1.16667 NA Intergenic Intergenic 177282 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 347.333 chr1 167967249 167967653 + 1.16667 NA intron (NM_001017977, intron 3 of 18) intron (NM_001017977, intron 3 of 18) -30379 NM_001143674 25874 Hs.517768 NM_015415 ENSG00000143158 MPC2 BRP44|SLC54A2 mitochondrial pyruvate carrier 2 protein-coding 248.5-19 chr6 138928395 138928981 + 1.16667 NA intron (NM_031922, intron 9 of 19) intron (NM_031922, intron 9 of 19) 59573 NM_031922 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 153-36 chr3 99032753 99033002 + 1.16667 NA Intergenic L1PA15|LINE|L1 -131182 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 314.834 chr1 46973821 46974184 + 1.16667 NA intron (NM_001320289, intron 1 of 11) L1PA15|LINE|L1 12638 NM_001320289 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 245.834-7 chr3 188209814 188210176 + 1.16667 NA intron (NM_001167672, intron 1 of 9) intron (NM_001167672, intron 1 of 9) -2938 NM_005578 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 154.167-16 chr12 45046824 45046986 + 1.16667 NA intron (NM_001004329, intron 1 of 3) intron (NM_001004329, intron 1 of 3) 4194 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 172.334-3 chr12 4950401 4950637 + 1.16667 NA Intergenic MER121|DNA|hAT? 40614 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 408.167 chr15 50625887 50626374 + 1.16667 NA intron (NR_149154, intron 11 of 37) MER20B|DNA|hAT-Charlie 60667 NR_149153 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 223.834 chr1 147119390 147119730 + 1.16667 NA Intergenic Intergenic -5214 NR_103466 644861 Hs.451804 NR_103466 NBPF13P - NBPF member 13, pseudogene pseudo 261.333 chr1 40475057 40475494 + 1.16667 NA Intergenic L1MEg|LINE|L1 -2015 NM_198494 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 163.167-4 chr11 48303641 48303888 + 1.16667 NA Intergenic L1M3c|LINE|L1 -2459 NM_001004725 256148 Hs.553657 NM_001004725 ENSG00000176555 OR4S1 OR11-100 olfactory receptor family 4 subfamily S member 1 protein-coding 137-81 chr6 1740882 1741014 + 1.16667 NA intron (NM_001253846, intron 8 of 10) Charlie5|DNA|hAT-Charlie 131033 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 121.333-117 chr9 88998037 88998212 + 1.16667 NA intron (NM_005226, intron 1 of 1) intron (NM_005226, intron 1 of 1) 6656 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 253.334-7 chr6 160301691 160302036 + 1.16667 NA Intergenic Intergenic -43042 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 292-4 chr15 62384878 62385401 + 1.16667 NA Intergenic Intergenic 42110 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 194.334-6 chr5 146443773 146444066 + 1.16667 NA Intergenic Intergenic -3414 NM_006706 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 261.667-12 chr14 50947015 50947382 + 1.16667 NA Intergenic MER113|DNA|hAT-Charlie -2715 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 330.334-2 chr12 29011434 29011779 + 1.16667 NA Intergenic L1ME1|LINE|L1 -137672 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 131.167-84 chr9 30271103 30271299 + 1.16667 NA Intergenic Intergenic 137253 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 198.834-8 chr3 78552128 78552338 + 1.16667 NA Intergenic THE1D|LTR|ERVL-MaLR 467226 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 365.5 chr1 154685700 154686195 + 1.16667 NA Intergenic Intergenic -57950 NM_001365046 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase RNA specific protein-coding 221-30 chr7 19850521 19851023 + 1.16667 NA Intergenic L1MEf|LINE|L1 -77155 NM_001366628 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 203-21 chr2 75755981 75756203 + 1.16667 NA Intergenic MLT1N2|LTR|ERVL-MaLR -45177 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 129.834-2 chr14 54819362 54819528 + 1.16667 NA Intergenic MER102b|DNA|hAT-Charlie 58748 NR_036194 100422984 NR_036194 ENSG00000265432 MIR4308 - microRNA 4308 ncRNA 307.334-4 chr2 116307922 116308356 + 1.16667 NA Intergenic AluSz6|SINE|Alu 964324 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 230.334-5 chrX 46614208 46614458 + 1.16667 NA intron (NM_001257291, intron 15 of 16) MER47A|DNA|TcMar-Tigger 40568 NM_019886 56548 Hs.129955 NM_019886 ENSG00000147119 CHST7 C6ST-2|GST-5 carbohydrate sulfotransferase 7 protein-coding 122.834-4 chr8 103062530 103062687 + 1.16667 NA intron (NM_001695, intron 8 of 12) intron (NM_001695, intron 8 of 12) 41525 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 197.167-44 chr5 78107087 78107321 + 1.16667 NA intron (NM_003664, intron 20 of 26) intron (NM_003664, intron 20 of 26) 148957 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 146.5-66 chr4 115483026 115483204 + 1.16667 NA Intergenic Intergenic -369495 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 130-21 chr11 110804443 110804667 + 1.16667 NA Intergenic Charlie1b|DNA|hAT-Charlie -91366 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 216.333-12 chr12 88897584 88897817 + 1.16667 NA Intergenic Intergenic 121992 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 229.167 chr1 208829221 208829600 + 1.16667 NA Intergenic Intergenic 100722 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 248.667-12 chr14 66345454 66345919 + 1.16667 NA Intergenic Intergenic -140685 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 186-50 chr6 156082601 156082989 + 1.16667 NA Intergenic Intergenic 135998 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 182.834-4 chr19 36579613 36579946 + 1.16667 NA TTS (NR_027239) TTS (NR_027239) -6487 NM_020951 57711 Hs.654960 NM_020951 ENSG00000186020 ZNF529 - zinc finger protein 529 protein-coding 184.5-11 chr11 86490966 86491194 + 1.16667 NA intron (NM_001014811, intron 5 of 13) intron (NM_001014811, intron 5 of 13) 116193 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 412.834 chr5 118257383 118258171 + 1.16667 NA intron (NR_104997, intron 2 of 2) L1MC5a|LINE|L1 -24797 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 184.667-43 chr6 23974522 23974925 + 1.16667 NA Intergenic Intergenic -151492 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 303.167-8 chr6 35908273 35908671 + 1.16667 NA intron (NR_034069, intron 2 of 15) THE1D-int|LTR|ERVL-MaLR 12626 NM_003137 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 292.001-2 chr5 45384268 45384607 + 1.16667 NA intron (NM_021072, intron 4 of 7) intron (NM_021072, intron 4 of 7) 311943 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 176.834-6 chr8 29180283 29180490 + 1.16667 NA intron (NM_015254, intron 7 of 39) intron (NM_015254, intron 7 of 39) 82684 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 217.333-39 chr8 122998052 122998291 + 1.16667 NA Intergenic L1ME3A|LINE|L1 27601 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 366.501 chr2 59332793 59333438 + 1.16667 NA Intergenic Intergenic 115407 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 262-4 chr10 74246525 74246826 + 1.16667 NA intron (NM_001369124, intron 3 of 9) LTR54|LTR|ERV1 69912 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 270.5 chr1 67790981 67791275 + 1.16667 NA intron (NM_018841, intron 1 of 3) intron (NM_018841, intron 1 of 3) -41160 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12, DIRAS3 and WLS antisense RNA 1 ncRNA 192.834-2 chr12 113902175 113902416 + 1.16667 NA intron (NM_001146698, intron 21 of 24) L1MD2|LINE|L1 64030 NM_001146699 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 204.5-28 chr4 153900130 153900396 + 1.16667 NA Intergenic Intergenic -111180 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 305.167-5 chr4 21021421 21021740 + 1.16667 NA intron (NM_147182, intron 2 of 8) Tigger3b|DNA|TcMar-Tigger -37571 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 329.834-3 chr8 67486996 67487465 + 1.16667 NA intron (NM_020361, intron 6 of 10) L1PA6|LINE|L1 143396 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 221.834-4 chr5 35919783 35920020 + 1.16667 NA intron (NM_001042625, intron 2 of 4) intron (NM_001042625, intron 2 of 4) 18721 NM_001042625 133690 Hs.55150 NM_144647 ENSG00000152611 CAPSL - calcyphosine like protein-coding 292.001 chr18 21286263 21286577 + 1.16667 NA intron (NM_001142966, intron 1 of 32) intron (NM_001142966, intron 1 of 32) 44178 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 147.667-38 chr21 23607121 23607281 + 1.16667 NA Intergenic L1M2|LINE|L1 -222366 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 234.834-8 chr4 73847192 73847487 + 1.16667 NA Intergenic LTR90B|LTR|LTR -5957 NM_002620 5197 Hs.72933 NM_002620 ENSG00000109272 PF4V1 CXCL4L1|CXCL4V1|PF4-ALT|PF4A|SCYB4V1 platelet factor 4 variant 1 protein-coding 115.334-4 chr21 27635821 27635936 + 1.16667 NA Intergenic L1ME1|LINE|L1 -86501 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 291.501 chr4 145608045 145608461 + 1.16667 NA Intergenic Intergenic -11132 NM_172250 166785 Hs.452864 NM_172250 ENSG00000151611 MMAA cblA metabolism of cobalamin associated A protein-coding 116-41 chr19 34055251 34055430 + 1.16667 NA Intergenic Intergenic -117164 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 411.667 chr5 90979486 90980231 + 1.16667 NA intron (NR_003149, intron 84 of 89) MIR3|SINE|MIR 334544 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 256.667-13 chr16 80827038 80827472 + 1.16667 NA Intergenic Intergenic -22657 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 126.667-48 chr20 54775625 54775828 + 1.16667 NA Intergenic Intergenic 300133 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 237.334-5 chr2 157064159 157064590 + 1.16667 NA Intergenic Intergenic -193331 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 203.167-13 chr12 75117295 75117550 + 1.16667 NA intron (NM_001260499, intron 2 of 3) intron (NM_001260499, intron 2 of 3) 92326 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 294.667-13 chr7 64814016 64814373 + 1.16667 NA intron (NM_001367575, intron 2 of 5) MER5A1|DNA|hAT-Charlie 19766 NM_001160183 7697 Hs.184080 NM_006524 ENSG00000197008 ZNF138 pHZ-32 zinc finger protein 138 protein-coding 185.834-10 chr8 78473468 78473742 + 1.16667 NA Intergenic Intergenic -42735 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 170.167-17 chr13 37021709 37021894 + 1.16667 NA intron (NM_001014286, intron 20 of 25) intron (NM_001014286, intron 20 of 25) 21015 NM_181503 11340 Hs.294041 NM_181503 ENSG00000120699 EXOSC8 CIP3|EAP2|OIP2|PCH1C|RRP43|Rrp43p|bA421P11.3|p9 exosome component 8 protein-coding 262.167-12 chr20 32013870 32014112 + 1.16667 NA intron (NM_080625, intron 1 of 8) intron (NM_080625, intron 1 of 8) 3553 NM_001365692 140706 Hs.382151 NM_080625 ENSG00000101331 CCM2L C20orf160|dJ310O13.5 CCM2 like scaffold protein protein-coding 265.167-7 chr18 9922780 9923192 + 1.16667 NA intron (NM_194434, intron 1 of 5) intron (NM_194434, intron 1 of 5) 8970 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 292.5-4 chr12 10156678 10157112 + 1.16667 NA Intergenic L1ME1|LINE|L1 -13704 NM_001079815 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 143.833-15 chr17 69854195 69854378 + 1.16667 NA intron (NR_109972, intron 4 of 4) intron (NR_109972, intron 4 of 4) -107421 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 223-22 chr4 43770333 43770784 + 1.16667 NA Intergenic Intergenic -246303 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 203.167-41 chrX 105010593 105010882 + 1.16667 NA intron (NM_017416, intron 2 of 10) intron (NM_017416, intron 2 of 10) 209956 NM_031274 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 149.667-74 chr8 64441426 64441587 + 1.16667 NA Intergenic Intergenic 62357 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 265.667 chr1 43607367 43607635 + 1.16667 NA intron (NM_001329137, intron 21 of 34) intron (NM_001329137, intron 21 of 34) -42648 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 116.834-4 chr14 27566341 27566485 + 1.16667 NA intron (NR_148991, intron 2 of 2) L1MA9|LINE|L1 -46175 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 152.167-17 chr14 84751608 84751797 + 1.16667 NA Intergenic Intergenic -520230 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 167.833-16 chr14 47659212 47659535 + 1.16667 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 15581 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 191.167-28 chr6 50312342 50312567 + 1.16667 NA Intergenic Intergenic -262525 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 120-5 chr1 107576067 107576501 + 1.16667 NA intron (NM_006113, intron 25 of 26) intron (NM_006113, intron 25 of 26) 112215 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 187.334-10 chrX 74216446 74216663 + 1.16667 NA intron (NR_028379, intron 5 of 6) L2|LINE|L2 1907 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 240-23 chr22 24491890 24492284 + 1.16667 NA intron (NR_028483, intron 1 of 7) L2c|LINE|L2 2987 NR_028483 646023 Hs.632761 NM_001039784 ENSG00000178803 ADORA2A-AS1 C22orf45 ADORA2A antisense RNA 1 ncRNA 298.167-5 chr2 158538671 158539188 + 1.16667 NA intron (NM_001005476, intron 2 of 20) intron (NM_001005476, intron 2 of 20) 81977 NM_003628 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 186.834-8 chr7 6583646 6583860 + 1.16667 NA intron (NR_163913, intron 6 of 7) intron (NR_163913, intron 6 of 7) -6268 NM_001303039 79034 Hs.487511 NM_024067 ENSG00000146576 C7orf26 - chromosome 7 open reading frame 26 protein-coding 248.5-15 chr5 32471256 32471558 + 1.16667 NA Intergenic Intergenic -26667 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 308-6 chr4 57739916 57740391 + 1.16667 NA Intergenic Intergenic 314281 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 127.667-46 chr2 161328326 161328507 + 1.16667 NA intron (NM_005805, intron 3 of 11) L1ME3Cz|LINE|L1 19991 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 236.5-31 chr8 105168588 105168867 + 1.16667 NA Intergenic Intergenic -149711 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 211.167-3 chr1 181635495 181635784 + 1.16667 NA intron (NM_001205293, intron 6 of 47) MER5A|DNA|hAT-Charlie 152122 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 161.334-2 chr11 38070823 38071037 + 1.16667 NA Intergenic L1M1|LINE|L1 132329 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 166.167-54 chr6 88622653 88622804 + 1.16667 NA intron (NM_001286428, intron 12 of 13) L2|LINE|L2 -83359 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 190.834-6 chr5 36606558 36606770 + 1.16667 NA promoter-TSS (NM_001166695) promoter-TSS (NM_001166695) 58 NM_001166695 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 306.333-2 chr1 192183454 192183809 + 1.16667 NA intron (NM_130782, intron 4 of 4) L1MB5|LINE|L1 25169 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 194.167-6 chr10 76326279 76326518 + 1.16667 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) 543637 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 201.834-5 chr2 60652031 60652318 + 1.16667 NA Intergenic MLT1G1|LTR|ERVL-MaLR -98520 NM_138559 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 178.834-6 chrX 20918672 20918838 + 1.16667 NA Intergenic Intergenic -455663 NM_001168647 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 187.334-5 chr3 16503255 16503826 + 1.16667 NA intron (NM_015150, intron 1 of 9) intron (NM_015150, intron 1 of 9) 10159 NM_015150 23180 Hs.98910 NM_015150 ENSG00000131378 RFTN1 MIG2|PIB10|PIG9|RAFTLIN raftlin, lipid raft linker 1 protein-coding 195.167-43 chr9 27178726 27179177 + 1.16667 NA intron (NM_001290077, intron 6 of 21) L1MEb|LINE|L1 69810 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 170.167-30 chr2 79431700 79431881 + 1.16667 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 69054 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 266 chr1 43166930 43167319 + 1.16667 NA intron (NM_006824, intron 6 of 8) intron (NM_006824, intron 6 of 8) 4588 NR_106791 102465439 NR_106791 ENSG00000284410 MIR6733 hsa-mir-6733 microRNA 6733 ncRNA 226.5-36 chr8 130094982 130095574 + 1.16667 NA intron (NM_018482, intron 24 of 29) intron (NM_018482, intron 24 of 29) -10510 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 201.833-3 chr10 117145500 117145759 + 1.16667 NA Intergenic Intergenic -7359 NM_199131 11023 Hs.441536 NM_199131 ENSG00000148704 VAX1 MCOPS11 ventral anterior homeobox 1 protein-coding 151.167-28 chr2 49070640 49070817 + 1.16667 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 11125 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 275-5 chr2 123701483 123701905 + 1.16667 NA Intergenic L1MC3|LINE|L1 323480 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 132.667-78 chr5 110609313 110609585 + 1.16667 NA intron (NM_001039763, intron 8 of 13) L1M6|LINE|L1 -95534 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 148.334 chr1 233598558 233598712 + 1.16667 NA Intergenic Intergenic -15471 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 233.667-6 chr12 27174921 27175222 + 1.16667 NA Intergenic MLT1I|LTR|ERVL-MaLR -69215 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 256-4 chr12 50289294 50289731 + 1.16667 NA Intergenic Intergenic -5992 NM_001113546 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|LDLCQ8|SREBP3 LIM domain and actin binding 1 protein-coding 179.834-6 chr15 94513388 94513829 + 1.16667 NA Intergenic Intergenic 157678 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 118.833-5 chr1 215992306 215992494 + 1.16667 NA intron (NM_206933, intron 35 of 71) intron (NM_206933, intron 35 of 71) -80065 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 209.333-34 chr4 10747968 10748242 + 1.16667 NA Intergenic L2a|LINE|L2 -63337 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 210.834 chr14 78514490 78515012 + 1.16667 NA intron (NM_004796, intron 1 of 16) L2a|LINE|L2 111032 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 190.5-14 chr12 117676096 117676434 + 1.16667 NA intron (NM_173598, intron 4 of 19) intron (NM_173598, intron 4 of 19) 292725 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 144-42 chr21 23209926 23210277 + 1.16667 NA Intergenic Intergenic 130817 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 188.334-10 chr7 22245905 22246143 + 1.16667 NA intron (NM_012294, intron 7 of 25) L1PA16|LINE|L1 -51214 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 179.333-21 chr14 75751856 75752124 + 1.16667 NA intron (NM_015072, intron 17 of 31) MER41A|LTR|ERV1 90744 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 176.833-26 chr5 34748006 34748294 + 1.16667 NA intron (NM_001145525, intron 4 of 19) intron (NM_001145525, intron 4 of 19) 60591 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 244.167-19 chr6 129857460 129857833 + 1.16667 NA intron (NM_001010876, intron 1 of 4) AluSx1|SINE|Alu 3669 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 159.167-30 chr2 150737859 150738117 + 1.16667 NA Intergenic L1ME1|LINE|L1 109091 NR_110245 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 204.834-2 chr1 41340510 41340689 + 1.16667 NA Intergenic L1MEc|LINE|L1 -20835 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 253.834-6 chr4 52006982 52007212 + 1.16667 NA intron (NM_001024611, intron 2 of 4) intron (NM_001024611, intron 2 of 4) 13266 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 387.334 chr7 27486009 27486689 + 1.16667 NA Intergenic Intergenic -129625 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 211-4 chr10 27636658 27637043 + 1.16667 NA Intergenic L1ME3|LINE|L1 -107765 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 290.501-3 chr5 85885821 85886199 + 1.16667 NA Intergenic Intergenic -396434 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 155.667-41 chr2 78128086 78128512 + 1.16667 NA TTS (NR_110287) TTS (NR_110287) 39569 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 215-17 chr2 24040350 24040622 + 1.16667 NA intron (NM_025203, intron 1 of 3) intron (NM_025203, intron 1 of 3) 6905 NM_025203 80304 Hs.24624 NM_025203 ENSG00000163026 WDCP C2orf44|MMAP|PP384 WD repeat and coiled coil containing protein-coding 190-16 chr15 47250628 47250858 + 1.16667 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 66654 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 227-3 chr11 22640943 22641245 + 1.16667 NA Intergenic LTR33|LTR|ERVL -15253 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF FA complementation group F protein-coding 217-10 chr2 13190123 13190439 + 1.16667 NA Intergenic Intergenic -183268 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 253.333-18 chr5 88874166 88874547 + 1.16667 NA intron (NM_001131005, intron 2 of 10) intron (NM_001131005, intron 2 of 10) 8828 NM_001364347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 129.333-18 chr11 99596791 99596974 + 1.16667 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 40737 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 114.833-69 chr8 4715533 4715651 + 1.16667 NA intron (NM_033225, intron 1 of 69) L2|LINE|L2 279322 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 128.334-8 chr6 6676498 6676645 + 1.16667 NA Intergenic (TTTTAA)n|Simple_repeat|Simple_repeat -53745 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 290.167-6 chr2 88595576 88595904 + 1.16667 NA intron (NM_004836, intron 2 of 16) intron (NM_004836, intron 2 of 16) 29189 NM_001313915 9451 Hs.591589 NM_004836 ENSG00000172071 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 159.5-4 chr10 44166347 44166553 + 1.16667 NA Intergenic Intergenic -126300 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 271.5-22 chr7 55351639 55352081 + 1.16667 NA Intergenic LTR24B|LTR|ERV1 -13588 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 319.667-16 chr7 88209328 88209740 + 1.16667 NA intron (NM_198901, intron 5 of 7) intron (NM_198901, intron 5 of 7) -7126 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 180.834-3 chr13 54213678 54213901 + 1.16667 NA Intergenic LTR27D|LTR|ERV1 -80918 NR_108062 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 288-7 chr3 3146132 3146519 + 1.16667 NA intron (NR_159938, intron 5 of 6) intron (NR_159938, intron 5 of 6) 19385 NM_001367322 51095 Hs.732725 NM_016000 ENSG00000072756 TRNT1 CCA1|CGI-47|MtCCA|RPEM|SIFD tRNA nucleotidyl transferase 1 protein-coding 221.167-26 chr9 31471368 31471718 + 1.16667 NA Intergenic Tigger17b|DNA|TcMar-Tigger -90053 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 169.333-17 chr12 26470125 26470457 + 1.16667 NA intron (NM_002223, intron 45 of 56) intron (NM_002223, intron 45 of 56) 274718 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 227.167-15 chr2 32557909 32558151 + 1.16667 NA intron (NR_125793, intron 1 of 1) intron (NR_125793, intron 1 of 1) 16788 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 242-22 chr7 94585113 94585362 + 1.16667 NA 3' UTR (NM_001362807, exon 12 of 12) 3' UTR (NM_001362807, exon 12 of 12) 70896 NM_001346713 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 147-42 chr2 166887077 166887336 + 1.16667 NA Intergenic Intergenic -1281 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 240.333-18 chr3 180851812 180852238 + 1.16667 NA intron (NR_109986, intron 1 of 13) L1PA4|LINE|L1 18153 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 140-47 chr22 28949713 28949866 + 1.16667 NA intron (NM_032173, intron 1 of 8) Charlie1a|DNA|hAT-Charlie 32400 NM_032173 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 207.333-38 chr5 17903084 17903374 + 1.16667 NA intron (NR_134286, intron 5 of 7) intron (NR_134286, intron 5 of 7) 95955 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 200.667-51 chr8 118994076 118994392 + 1.16667 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 41971 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 518.501 chr8 125048952 125049568 + 1.16667 NA intron (NM_014846, intron 18 of 28) intron (NM_014846, intron 18 of 28) 42532 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 171.5 chr1 96685750 96686106 + 1.16667 NA Intergenic Intergenic -35677 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 258.167-6 chr15 86642997 86643455 + 1.16667 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -289654 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 245.5-15 chr4 40742231 40742524 + 1.16667 NA Intergenic L1M4|LINE|L1 -7578 NM_001330648 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 258.5-22 chr8 99788923 99789236 + 1.16667 NA intron (NM_017890, intron 43 of 61) intron (NM_017890, intron 43 of 61) 104628 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 188.667-37 chr3 100200042 100200220 + 1.16667 NA Intergenic L1M2|LINE|L1 14307 NR_028357 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 156.667-3 chr1 69850241 69850440 + 1.16667 NA intron (NM_001370785, intron 7 of 26) L2a|LINE|L2 -68982 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 191.833-35 chr9 29665623 29666015 + 1.16667 NA Intergenic L1PA17|LINE|L1 -452218 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 181.5-59 chr7 151209673 151209951 + 1.16667 NA intron (NM_005692, intron 15 of 15) intron (NM_005692, intron 15 of 15) 676 NM_001369125 114483833 Hs.686793 NM_001369125 LOC114483833 - novel histone H2B-like protein protein-coding 156.333-78 chr6 92495625 92495857 + 1.16667 NA Intergenic Intergenic -805313 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 164.167-21 chr15 41781233 41781380 + 1.16667 NA intron (NR_049762, intron 2 of 28) AluSz|SINE|Alu 6822 NM_001265611 23005 Hs.513661 NM_014994 ENSG00000137802 MAPKBP1 JNKBP-1|JNKBP1|NPHP20 mitogen-activated protein kinase binding protein 1 protein-coding 334.167-2 chr3 96508951 96509381 + 1.16667 NA Intergenic Charlie24|DNA|hAT-Charlie 149202 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 165-54 chr7 35638639 35638877 + 1.16667 NA intron (NM_022373, intron 5 of 8) intron (NM_022373, intron 5 of 8) 56377 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 193.667-26 chr2 63502417 63502594 + 1.16667 NA intron (NR_148705, intron 1 of 16) L1ME3G|LINE|L1 -64498 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 203.333-18 chr2 34103339 34103665 + 1.16667 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 36276 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 144.667-63 chr3 46136907 46137095 + 1.16667 NA Intergenic L1MB7|LINE|L1 71312 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 156.833-14 chr12 14201563 14201824 + 1.16667 NA Intergenic MSTD|LTR|ERVL-MaLR -163939 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 282.167-16 chr8 64395089 64395548 + 1.16667 NA Intergenic Intergenic 16169 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 179.834-11 chr4 179577562 179577757 + 1.16667 NA Intergenic L1MA10|LINE|L1 1581490 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 165.834 chr14 87470237 87470478 + 1.16667 NA Intergenic L1PA17|LINE|L1 184937 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 205.167-3 chr10 15105403 15105711 + 1.16667 NA TTS (NM_004808) TTS (NM_004808) 8202 NM_006414 10557 Hs.94986 NM_006414 ENSG00000152464 RPP38 - ribonuclease P/MRP subunit p38 protein-coding 227.833-4 chr14 64939759 64940041 + 1.16667 NA intron (NM_002083, intron 1 of 1) intron (NM_002083, intron 1 of 1) 2845 NR_046320 2877 Hs.2704 NM_002083 ENSG00000176153 GPX2 GI-GPx|GPRP|GPRP-2|GPx-2|GPx-GI|GSHPX-GI|GSHPx-2 glutathione peroxidase 2 protein-coding 191.334-7 chr4 80580820 80581059 + 1.16667 NA intron (NM_152770, intron 2 of 5) MLT1I|LTR|ERVL-MaLR 245219 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 198-34 chr2 232558004 232558213 + 1.16667 NA intron (NM_001276336, intron 3 of 6) intron (NM_001276336, intron 3 of 6) 7302 NM_001330202 9470 Hs.292026 NM_004846 ENSG00000135930 EIF4E2 4E-LP|4EHP|EIF4EL3|IF4e|h4EHP eukaryotic translation initiation factor 4E family member 2 protein-coding 180-7 chr11 106428361 106428599 + 1.16667 NA Intergenic Intergenic 177073 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 425.501 chr3 122122842 122123249 + 1.16667 NA Intergenic THE1C-int|LTR|ERVL-MaLR 45196 NM_006889 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 280.334-2 chr2 52865168 52865573 + 1.16667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -162755 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 142.167-56 chr3 95657007 95657185 + 1.16667 NA intron (NR_077228, intron 4 of 4) Charlie5|DNA|hAT-Charlie 26097 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 193.833-41 chr9 110767751 110768070 + 1.16667 NA exon (NM_005592, exon 8 of 14) exon (NM_005592, exon 8 of 14) 39648 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 264.5-12 chr5 22643154 22643657 + 1.16667 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 209939 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 252-14 chr7 41039983 41040402 + 1.16667 NA Intergenic Intergenic -60253 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 206.667-38 chr5 40412857 40413226 + 1.16667 NA Intergenic Intergenic -266874 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 332.167-9 chr8 144880962 144881367 + 1.16667 NA 3' UTR (NM_001363101, exon 6 of 6) 3' UTR (NM_001363101, exon 6 of 6) 19141 NM_001363103 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 246.334 chr10 53887953 53888286 + 1.16667 NA intron (NM_001354411, intron 27 of 34) intron (NM_001354411, intron 27 of 34) -598111 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 207.834-2 chr10 76798771 76799048 + 1.16667 NA Intergenic L1M4a1|LINE|L1 -89135 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 164.5-49 chr6 18733983 18734239 + 1.16667 NA Intergenic Intergenic 162327 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 267.501-4 chr4 106056029 106056355 + 1.16667 NA intron (NM_001290768, intron 26 of 26) L2c|LINE|L2 -33714 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 340-2 chr17 33767331 33767745 + 1.16667 NA intron (NM_001094, intron 1 of 9) LTR106_Mam|LTR|LTR -233778 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 262.167-23 chr6 14170799 14171274 + 1.16667 NA Intergenic L1MB7|LINE|L1 53264 NM_001040280 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 154.667-45 chr21 35341122 35341405 + 1.16667 NA Intergenic L1ME4a|LINE|L1 239501 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 256.5-11 chr18 3670843 3671177 + 1.16667 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 67273 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 221.5-19 chr2 109444902 109445451 + 1.16667 NA intron (NM_001099289, intron 7 of 9) L1MEi|LINE|L1 -131551 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 212.334-5 chr7 31665652 31665865 + 1.16667 NA Intergenic Intergenic -21259 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 180.333-23 chr17 19978451 19978770 + 1.16667 NA promoter-TSS (NM_001330152) promoter-TSS (NM_001330152) -754 NM_001330152 11216 Hs.642676 NM_007202 ENSG00000108599 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A-kinase anchoring protein 10 protein-coding 267.5-7 chr2 55109196 55109684 + 1.16667 NA intron (NM_001321904, intron 1 of 9) intron (NM_001321904, intron 1 of 9) 28391 NM_001321904 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 270.667-3 chr15 59916532 59916807 + 1.16667 NA Intergenic Intergenic -87642 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 193.167-31 chr7 34072928 34073215 + 1.16667 NA intron (NM_133468, intron 12 of 15) intron (NM_133468, intron 12 of 15) 167532 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 162.333-74 chr8 115588636 115588884 + 1.16667 NA intron (NM_001282902, intron 3 of 5) intron (NM_001282902, intron 3 of 5) 79253 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 137.667-60 chr2 217242818 217243189 + 1.16667 NA Intergenic Intergenic -39730 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 182-19 chr16 23341997 23342212 + 1.16667 NA intron (NM_000336, intron 1 of 12) L1MB8|LINE|L1 39802 NM_000336 6338 Hs.414614 NM_000336 ENSG00000168447 SCNN1B BESC1|ENaCb|ENaCbeta|LIDLS1|SCNEB sodium channel epithelial 1 beta subunit protein-coding 166-72 chr8 124374475 124374638 + 1.16667 NA Intergenic LTR102_Mam|LTR|ERVL -1857 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 135.167-20 chr11 122894898 122895062 + 1.16667 NA intron (NM_001363089, intron 2 of 8) intron (NM_001363089, intron 2 of 8) 12050 NM_001363089 79864 Hs.164705 NM_024806 ENSG00000109944 JHY C11orf63 junctional cadherin complex regulator protein-coding 317.5-6 chr17 17876231 17876739 + 1.16667 NA intron (NM_001288787, intron 6 of 13) L3|LINE|CR1 -39474 NM_004176 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP1|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 332.833-2 chr3 97915965 97916445 + 1.16667 NA intron (NM_153605, intron 17 of 21) intron (NM_153605, intron 17 of 21) 56226 NM_153182 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 144.167-62 chr5 128803098 128803281 + 1.16667 NA Intergenic Intergenic -161938 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 129.5-57 chr21 36085948 36086155 + 1.16667 NA intron (NR_040084, intron 2 of 3) L1M1|LINE|L1 16027 NM_001757 873 Hs.88778 NM_001757 ENSG00000159228 CBR1 CBR|SDR21C1|hCBR1 carbonyl reductase 1 protein-coding 178.5-48 chr21 21608024 21608352 + 1.16667 NA Intergenic LTR48B|LTR|ERV1 129131 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 178.667-48 chr4 111849111 111849333 + 1.16667 NA Intergenic L2c|LINE|L2 -296232 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 252.167-10 chr20 38101329 38101669 + 1.16667 NA Intergenic L1MEc|LINE|L1 63771 NM_001323317 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 274.334-3 chr14 64379567 64379802 + 1.16667 NA Intergenic AluSc|SINE|Alu -8669 NM_005956 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 282.167-12 chr3 37307313 37307591 + 1.16667 NA intron (NM_001172713, intron 11 of 22) intron (NM_001172713, intron 11 of 22) -63257 NR_149029 152048 Hs.596176 NM_152532 ENSG00000270194 LOC152048 - uncharacterized FLJ31715 ncRNA 135.5-15 chr10 113807879 113808078 + 1.16667 NA Intergenic Intergenic -29924 NR_039703 100616162 NR_039703 ENSG00000283656 MIR4483 - microRNA 4483 ncRNA 317.001-2 chr18 59811872 59812245 + 1.16667 NA Intergenic MER94|DNA|hAT-Blackjack -87938 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 179.667-32 chr22 36654859 36655114 + 1.16667 NA intron (NM_006078, intron 1 of 3) intron (NM_006078, intron 1 of 3) 47872 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 212-15 chr19 34907832 34908156 + 1.16667 NA non-coding (NR_146451, exon 2 of 2) non-coding (NR_146451, exon 2 of 2) 2679 NR_146451 100652911 Hs.292009 NR_146451 ENSG00000269037 LINC01838 - long intergenic non-protein coding RNA 1838 ncRNA 131.5-16 chr11 83252216 83252415 + 1.16667 NA intron (NM_001300972, intron 11 of 11) L1ME3A|LINE|L1 34092 NM_001286118 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 372-6 chr5 32540430 32540796 + 1.16667 NA Intergenic Intergenic -44944 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 regulator of transcription protein-coding 293.334-2 chr4 165138220 165138580 + 1.16667 NA Intergenic MIRc|SINE|MIR -25540 NM_001100389 201931 Hs.704511 NM_152681 ENSG00000170088 TMEM192 - transmembrane protein 192 protein-coding 263.834-5 chr2 183938114 183938541 + 1.16667 NA Intergenic L1MA4A|LINE|L1 -440648 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 170.334 chr11 29123422 29123922 + 1.16667 NA Intergenic Intergenic -470741 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 156-79 chr6 145065572 145065795 + 1.16667 NA Intergenic Intergenic 621194 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 215.667-17 chr17 44784946 44785195 + 1.16667 NA Intergenic Charlie5|DNA|hAT-Charlie 26082 NM_002390 4185 Hs.6088 NM_002390 ENSG00000073670 ADAM11 MDC ADAM metallopeptidase domain 11 protein-coding 208.334-6 chr4 176771429 176771664 + 1.16667 NA intron (NM_005429, intron 1 of 6) intron (NM_005429, intron 1 of 6) 21376 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 194-46 chr5 59654969 59655159 + 1.16667 NA intron (NM_001165899, intron 3 of 16) L1MB8|LINE|L1 48639 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 221.667-14 chr2 37158791 37159040 + 1.16667 NA Intergenic AluSz|SINE|Alu -1868 NM_002759 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 144.5-25 chr14 51852217 51852423 + 1.16667 NA Intergenic Intergenic -8292 NM_053064 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 241.501 chr10 30885466 30885972 + 1.16667 NA intron (NM_001143766, intron 5 of 7) intron (NM_001143766, intron 5 of 7) 113798 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 141.833-38 chr6 65577287 65577461 + 1.16667 NA intron (NM_001292009, intron 2 of 43) L1MA8|LINE|L1 2430 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 129.167-48 chr3 83194562 83194718 + 1.16667 NA Intergenic Intergenic 1208498 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 180-23 chr2 126778879 126779193 + 1.16667 NA Intergenic Intergenic -119854 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 263-2 chr10 28590393 28590703 + 1.16667 NA intron (NM_100486, intron 5 of 12) intron (NM_100486, intron 5 of 12) 57430 NM_100486 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 360.501 chr1 108724864 108725236 + 1.16667 NA intron (NM_001144937, intron 5 of 12) AluSz|SINE|Alu 12142 NM_001144937 163479 Hs.258253 NM_173532 ENSG00000143107 FNDC7 - fibronectin type III domain containing 7 protein-coding 230.5-21 chr7 90187799 90188043 + 1.16667 NA intron (NR_110029, intron 2 of 2) AluJb|SINE|Alu 23714 NR_110029 100874100 Hs.573339 NR_110029 ENSG00000227646 STEAP2-AS1 - STEAP2 antisense RNA 1 ncRNA 227.834-3 chr2 12188946 12189172 + 1.16667 NA intron (NR_110196, intron 3 of 5) AluJb|SINE|Alu -10071 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 160.667-12 chr1 222842261 222842418 + 1.16667 NA intron (NM_032890, intron 1 of 9) intron (NM_032890, intron 1 of 9) 27300 NM_032890 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 129.667-59 chr2 224303299 224303518 + 1.16667 NA Intergenic Intergenic 98586 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 155.834-2 chr21 20893162 20893308 + 1.16667 NA Intergenic L2a|LINE|L2 -90127 NR_109788 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 224.333-35 chr8 100444888 100445271 + 1.16667 NA Intergenic LTR88c|LTR|Gypsy? 62316 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 166.5-42 chr4 36368969 36369229 + 1.16667 NA Intergenic Intergenic 57329 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 177.667-5 chr1 233183967 233184286 + 1.16667 NA intron (NM_014801, intron 15 of 33) intron (NM_014801, intron 15 of 33) 111599 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 207.834-6 chr20 11475560 11475812 + 1.16667 NA Intergenic L1MA3|LINE|L1 -202303 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 232.167-14 chr18 33590418 33590715 + 1.16667 NA intron (NM_030632, intron 1 of 11) intron (NM_030632, intron 1 of 11) 12347 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 419.334-2 chr6 161615322 161615828 + 1.16667 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 144598 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 261.167-5 chr16 53563889 53564285 + 1.16667 NA Intergenic Intergenic -60783 NM_001308325 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 239.667-5 chr12 25121844 25122167 + 1.16667 NA intron (NR_147909, intron 9 of 14) intron (NR_147909, intron 9 of 14) 69299 NM_006152 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 323.333-4 chr15 62097514 62098110 + 1.16667 NA Intergenic Intergenic 30835 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 183.667-23 chr14 57855116 57855301 + 1.16667 NA intron (NM_001352012, intron 1 of 8) MIRb|SINE|MIR 9791 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 304.334 chr13 78479861 78480124 + 1.16667 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -116130 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 280.667-15 chr2 225915353 225915706 + 1.16667 NA Intergenic L1M3f|LINE|L1 -227265 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 349.334 chr4 136004766 136005292 + 1.16667 NA Intergenic L1PA7|LINE|L1 -91349 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 327.833-3 chr2 28936182 28937006 + 1.16667 NA intron (NM_015131, intron 12 of 17) L1MB7|LINE|L1 8611 NR_145755 109617012 NR_145755 ENSG00000265706 SNORD53B - small nucleolar RNA, C/D box 53B snoRNA 176.834-3 chr2 124893722 124893959 + 1.16667 NA intron (NM_130773, intron 21 of 23) intron (NM_130773, intron 21 of 23) 868553 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 225.334-6 chr7 94871583 94871919 + 1.16667 NA Intergenic L1PB1|LINE|L1 -35843 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 232.334-7 chr6 121940593 121940886 + 1.16667 NA Intergenic L1M4|LINE|L1 -458812 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 341.334-5 chr4 44463881 44464393 + 1.16667 NA Intergenic Intergenic -15328 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 146.5-84 chr8 34641262 34641543 + 1.16667 NA Intergenic Intergenic -142519 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 278.667-9 chr2 25262440 25262798 + 1.16667 NA intron (NR_135490, intron 6 of 23) intron (NR_135490, intron 6 of 23) -10304 NM_153759 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 129.667-16 chr12 1127917 1128073 + 1.16667 NA intron (NR_027948, intron 6 of 19) L1MEd|LINE|L1 100247 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 269.667-16 chr7 82551992 82552287 + 1.16667 NA Intergenic L1PA16|LINE|L1 -108183 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 368.834 chr14 47827417 47827966 + 1.16667 NA Intergenic Intergenic -32677 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 320.5-3 chr10 32374930 32375823 + 1.16667 NA TTS (NR_104163) TTS (NR_104163) 3393 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 153.167-52 chr7 8088380 8088788 + 1.16667 NA 3' UTR (NM_138426, exon 8 of 8) 3' UTR (NM_138426, exon 8 of 8) 119788 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 292.834-4 chr14 78393660 78394043 + 1.16667 NA intron (NR_073547, intron 4 of 20) L1MD1|LINE|L1 -9868 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 218-6 chr10 90437502 90437762 + 1.16667 NA intron (NR_110657, intron 3 of 6) MIRb|SINE|MIR 103173 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 354.334 chr5 4300877 4301503 + 1.16667 NA Intergenic Intergenic -472291 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 242.5-14 chr5 61490943 61491298 + 1.16667 NA intron (NM_020928, intron 3 of 13) MIR1_Amn|SINE|MIR -146640 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 129.667-71 chr3 178203307 178203481 + 1.16667 NA Intergenic Intergenic -215807 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 255.167-8 chr3 103985222 103985656 + 1.16667 NA Intergenic LTR81AB|LTR|Gypsy -461323 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 213.333-30 chr3 103403726 103404088 + 1.16667 NA Intergenic Intergenic 120209 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 194.834-8 chr5 2222650 2222900 + 1.16667 NA Intergenic Intergenic 89426 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 188.167-24 chr2 199656161 199656464 + 1.16667 NA intron (NR_110270, intron 6 of 6) L1MCa|LINE|L1 48244 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 195-28 chr3 44664720 44664999 + 1.16667 NA intron (NR_157564, intron 1 of 2) (TA)n|Simple_repeat|Simple_repeat 16127 NM_003420 7584 Hs.288658 NM_003420 ENSG00000169981 ZNF35 HF.10|HF10|Zfp105 zinc finger protein 35 protein-coding 185.834-4 chr2 55488661 55488965 + 1.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR -30782 NM_080667 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 127.334-2 chr14 65612795 65613102 + 1.16667 NA intron (NM_178156, intron 2 of 9) intron (NM_178156, intron 2 of 9) 141846 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 206.167-11 chr2 121215308 121215652 + 1.16667 NA Intergenic AluSx1|SINE|Alu 69722 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 200.667-29 chr2 4980274 4980579 + 1.16667 NA Intergenic L2|LINE|L2 -324204 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 213.834 chr1 89200345 89200578 + 1.16667 NA Intergenic Intergenic -1519 NM_052941 115361 Hs.409925 NM_052941 ENSG00000162654 GBP4 Mpa2 guanylate binding protein 4 protein-coding 259.5-15 chr4 48762379 48762805 + 1.16667 NA intron (NM_015030, intron 1 of 63) intron (NM_015030, intron 1 of 63) 17707 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 202.833-22 chr5 64207817 64208185 + 1.16667 NA intron (NM_001113561, intron 2 of 7) intron (NM_001113561, intron 2 of 7) 42158 NM_001323292 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 286.667-14 chr6 65412073 65412352 + 1.16667 NA intron (NM_198283, intron 4 of 9) MLT1A0|LTR|ERVL-MaLR 110794 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 195.167-6 chr11 94905992 94906240 + 1.16667 NA Intergenic L1MB7|LINE|L1 67440 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 321.5-7 chr5 33173060 33173356 + 1.16667 NA Intergenic MIR|SINE|MIR -56527 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 115-54 chr3 138249310 138249525 + 1.16667 NA intron (NM_001282342, intron 10 of 19) intron (NM_001282342, intron 10 of 19) 61886 NM_001282342 25852 Hs.744868 NM_014154 ENSG00000114098 ARMC8 GID5|HSPC056|S863-2|VID28 armadillo repeat containing 8 protein-coding 250.834-5 chr6 46220668 46221009 + 1.16667 NA 3' UTR (NM_001251974, exon 5 of 5) 3' UTR (NM_001251974, exon 5 of 5) -49828 NM_001290073 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 264.501-2 chr2 161993389 161993664 + 1.16667 NA intron (NM_001935, intron 25 of 25) intron (NM_001935, intron 25 of 25) 80689 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 192.167 chr1 225425837 225426152 + 1.16667 NA intron (NM_194442, intron 1 of 13) intron (NM_194442, intron 1 of 13) 2044 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 365.834 chr13 82517953 82518303 + 1.16667 NA Intergenic Intergenic -1291145 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 128.334-2 chr10 96809478 96809635 + 1.16667 NA Intergenic Tigger7|DNA|TcMar-Tigger 19208 NR_030338 693192 NR_030338 ENSG00000207976 MIR607 MIRN607|hsa-mir-607 microRNA 607 ncRNA 125-11 chr10 67191388 67191603 + 1.16667 NA intron (NM_001127384, intron 6 of 17) L1MA9|LINE|L1 179229 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 155-9 chr10 39214912 39215174 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr 518447 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 204-28 chr3 191391635 191391941 + 1.16667 NA 3' UTR (NM_174908, exon 11 of 11) 3' UTR (NM_174908, exon 11 of 11) -33736 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 320.834 chr12 34649919 34650349 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr 627638 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 130.167-48 chr3 100676619 100676784 + 1.16667 NA intron (NM_001308362, intron 9 of 9) L1MA3|LINE|L1 -32589 NM_001007565 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 175.167-6 chr1 184858606 184858814 + 1.16667 NA intron (NM_052966, intron 5 of 13) L1ME3G|LINE|L1 -103852 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 211.667-5 chr1 238302338 238302519 + 1.16667 NA Intergenic Intergenic 183589 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 114.5-89 chr8 13838771 13839049 + 1.16667 NA Intergenic AluJo|SINE|Alu 209220 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 246.167-15 chr2 135908329 135908582 + 1.16667 NA intron (NM_001293312, intron 14 of 14) L1PA10|LINE|L1 -32012 NM_005915 4175 Hs.444118 NM_005915 ENSG00000076003 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 274.333-3 chr10 102852307 102852735 + 1.16667 NA Intergenic AluSx1|SINE|Alu -1689 NR_037644 100528007 Hs.720370 NR_037644 BORCS7-ASMT C10orf32-AS3MT|C10orf32-ASMT BORCS7-ASMT readthrough (NMD candidate) ncRNA 298.333-4 chr11 67140587 67141255 + 1.16667 NA intron (NR_027473, intron 2 of 20) intron (NR_027473, intron 2 of 20) 21658 NR_027473 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 239.667-19 chr2 161764253 161764516 + 1.16667 NA intron (NM_001354443, intron 2 of 25) L1MC5a|LINE|L1 139968 NM_001354445 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 300.834-2 chr4 78935374 78935833 + 1.16667 NA intron (NR_146465, intron 1 of 6) intron (NR_146465, intron 1 of 6) 3835 NR_146463 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 126.333-112 chr8 137130987 137131142 + 1.16667 NA Intergenic L2a|LINE|L2 282524 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 243.834-3 chr13 22674206 22674669 + 1.16667 NA Intergenic Intergenic 223744 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 173.834-5 chr2 62247939 62248285 + 1.16667 NA Intergenic MER39B|LTR|ERV1 32591 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 177-32 chr2 73054249 73054469 + 1.16667 NA intron (NM_001330406, intron 2 of 14) intron (NM_001330406, intron 2 of 14) 4813 NM_001330406 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC|SLC56A5 sideroflexin 5 protein-coding 358.334-2 chr14 61958640 61959216 + 1.16667 NA intron (NM_001367663, intron 1 of 7) L1MA10|LINE|L1 31233 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 311.834-3 chr5 25688826 25689209 + 1.16667 NA Intergenic Intergenic 498064 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 169.334-6 chr8 82457901 82458091 + 1.16667 NA Intergenic L1PA8|LINE|L1 -454108 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 159.667-78 chr6 76245486 76245733 + 1.16667 NA Intergenic Intergenic -172931 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 302.334-5 chr17 61210219 61210728 + 1.16667 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 157231 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 236.834-5 chr2 3182414 3182744 + 1.16667 NA Intergenic Intergenic -56553 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 136.667-21 chr14 24108526 24108740 + 1.16667 NA intron (NM_006177, intron 1 of 3).2 L1MC5|LINE|L1 -6064 NM_001163484 80344 Hs.525251 NM_025230 ENSG00000100897 DCAF11 GL014|PRO2389|WDR23 DDB1 and CUL4 associated factor 11 protein-coding 143.5-49 chr21 27766687 27766815 + 1.16667 NA Intergenic Intergenic 44372 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 239.5-10 chr17 19395352 19395704 + 1.16667 NA Intergenic L1MC2|LINE|L1 -8338 NM_001198695 4239 Hs.296049 NM_002404 ENSG00000166482 MFAP4 - microfibril associated protein 4 protein-coding 303.334-2 chr10 10579246 10579569 + 1.16667 NA intron (NM_001326317, intron 1 of 14) intron (NM_001326317, intron 1 of 14) 116857 NM_001326319 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 326-9 chr7 40196887 40197389 + 1.16667 NA intron (NM_024728, intron 6 of 14) intron (NM_024728, intron 6 of 14) 62162 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 259.667-8 chr15 41066377 41066714 + 1.16667 NA intron (NM_017553, intron 14 of 35) intron (NM_017553, intron 14 of 35) 49701 NR_104038 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1 INO80 complex ATPase subunit protein-coding 118.5-64 chr22 45193555 45193674 + 1.16667 NA 3' UTR (NM_015264, exon 10 of 10) 3' UTR (NM_015264, exon 10 of 10) -2002 NR_146602 105373064 NR_146602 LOC105373064 - uncharacterized LOC105373064 ncRNA 178.167-52 chr8 135583749 135583971 + 1.16667 NA intron (NM_006558, intron 6 of 8) intron (NM_006558, intron 6 of 8) 126404 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 235.167-22 chr5 29643120 29643770 + 1.16667 NA Intergenic THE1B-int|LTR|ERVL-MaLR -237115 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 285.834-4 chr3 122571279 122571569 + 1.16667 NA intron (NM_138287, intron 4 of 4) intron (NM_138287, intron 4 of 4) -6226 NM_001308320 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 202.833-32 chr8 122149577 122149888 + 1.16667 NA Intergenic Intergenic 418912 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 307.001 chr4 142710248 142710658 + 1.16667 NA intron (NM_003866, intron 2 of 26) MER112|DNA|hAT-Charlie 136082 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 146.167-5 chr1 167626469 167626615 + 1.16667 NA Intergenic Intergenic -3651 NM_001322923 92241 Hs.493867 NM_052862 ENSG00000198771 RCSD1 CAPZIP|MK2S4 RCSD domain containing 1 protein-coding 271.5-10 chr17 68517905 68518406 + 1.16667 NA intron (NM_212472, intron 2 of 10) THE1C-int|LTR|ERVL-MaLR 2761 NM_001276290 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 217-31 chr5 128070940 128071274 + 1.16667 NA intron (NR_152810, intron 1 of 3) intron (NR_152810, intron 1 of 3) 12068 NR_152800 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 143.667-72 chr3 115703144 115703367 + 1.16667 NA intron (NM_002045, intron 2 of 2) intron (NM_002045, intron 2 of 2) 79745 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 231.333 chr1 77326302 77326788 + 1.16667 NA intron (NM_012093, intron 5 of 13) intron (NM_012093, intron 5 of 13) 43458 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 248.5-22 chr8 110926028 110926306 + 1.16667 NA Intergenic Intergenic 101266 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 156.5-91 chrX 41766766 41767097 + 1.16667 NA intron (NM_003688, intron 3 of 26) L1MC5|LINE|L1 42750 NM_080817 27197 Hs.567457 NM_080817 ENSG00000171657 GPR82 - G protein-coupled receptor 82 protein-coding 140.167-41 chr21 30337412 30337748 + 1.16667 NA exon (NM_001077711, exon 1 of 1) exon (NM_001077711, exon 1 of 1) 114 NM_001077711 643812 Hs.580881 NM_001077711 ENSG00000206107 KRTAP27-1 - keratin associated protein 27-1 protein-coding 322.167-10 chr8 4505285 4505634 + 1.16667 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 489455 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 168.834 chr14 68576369 68576611 + 1.16667 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 52297 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 146.167-17 chr14 42906569 42906761 + 1.16667 NA Intergenic L1MEj|LINE|L1 1299809 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 121.167-61 chr4 55064203 55064379 + 1.16667 NA Intergenic Intergenic 61304 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 178.5-61 chr5 115148243 115148590 + 1.16667 NA intron (NM_001300752, intron 1 of 8) AluSg7|SINE|Alu 21492 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 191-38 chr21 26005128 26005435 + 1.16667 NA intron (NM_001204301, intron 6 of 16) AluSx|SINE|Alu 135109 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 266.667-6 chr15 37899182 37899558 + 1.16667 NA Intergenic Intergenic -35237 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 327.501 chr14 61784484 61784877 + 1.16667 NA intron (NM_003082, intron 8 of 9) MER58A|DNA|hAT-Charlie 22260 NM_003082 6617 Hs.179312 NM_003082 ENSG00000023608 SNAPC1 PTFgamma|SNAP43 small nuclear RNA activating complex polypeptide 1 protein-coding 328.167-2 chr2 84547016 84547505 + 1.16667 NA intron (NM_001370, intron 5 of 76) intron (NM_001370, intron 5 of 76) 30805 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 239.667-26 chr4 121860677 121861228 + 1.16667 NA intron (NM_176824, intron 4 of 18) MER5B|DNA|hAT-Charlie 9522 NM_176824 55212 Hs.591694 NM_018190 ENSG00000138686 BBS7 BBS2L1 Bardet-Biedl syndrome 7 protein-coding 242-20 chr7 30111551 30111875 + 1.16667 NA intron (NM_001350973, intron 13 of 13) AluJb|SINE|Alu -23273 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 151.334-2 chr14 64994823 64994972 + 1.16667 NA intron (NM_002028, intron 1 of 11) Tigger3b|DNA|TcMar-Tigger 8002 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 303.333-6 chr14 63059838 63060231 + 1.16667 NA Intergenic Intergenic -14576 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 182.5-10 chr14 53071868 53072191 + 1.16667 NA intron (NM_030637, intron 6 of 11) MIR|SINE|MIR 81294 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 249-11 chr2 99035251 99035684 + 1.16667 NA intron (NR_146001, intron 15 of 18) (TA)n|Simple_repeat|Simple_repeat -99242 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 424.333-3 chr8 72552543 72553185 + 1.16667 NA intron (NM_004770, intron 1 of 2) intron (NM_004770, intron 1 of 2) 15639 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 201-40 chr5 131909026 131909356 + 1.16667 NA intron (NM_001303622, intron 8 of 12) L1MA2|LINE|L1 36472 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 198.667-22 chr17 40590360 40590687 + 1.16667 NA Intergenic MER57A-int|LTR|ERV1 -25051 NM_001838 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 264.167-3 chr10 51560418 51560719 + 1.16667 NA intron (NM_001098512, intron 3 of 17) L1MC3|LINE|L1 139027 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 260-24 chrX 152794442 152795081 + 1.16667 NA Intergenic MSTA|LTR|ERVL-MaLR -25032 NM_005363 4105 Hs.441113 NM_005363 ENSG00000197172 MAGEA6 CT1.6|MAGE-3b|MAGE3B|MAGE6 MAGE family member A6 protein-coding 199.667-35 chr2 227181467 227181682 + 1.16667 NA intron (NM_000091, intron 1 of 51) L1ME4a|LINE|L1 17009 NM_000091 1285 Hs.570065 NM_000091 ENSG00000169031 COL4A3 ATS2|ATS3 collagen type IV alpha 3 chain protein-coding 147.333-39 chr2 53874991 53875195 + 1.16667 NA intron (NM_014614, intron 42 of 46) intron (NM_014614, intron 42 of 46) -15060 NM_001164165 100302652 Hs.40763 NM_001164165 ENSG00000270898 GPR75-ASB3 ASB-3|ASB3 GPR75-ASB3 readthrough protein-coding 281.834 chr1 247650088 247650440 + 1.16667 NA Intergenic MER4D|LTR|ERV1 22777 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 169.167-16 chr14 71071272 71071452 + 1.16667 NA intron (NM_014982, intron 26 of 35) Tigger1|DNA|TcMar-Tigger 163903 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 179.167-13 chr12 40652317 40652618 + 1.16667 NA Intergenic L2a|LINE|L2 -39972 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 179-8 chr12 89364252 89364528 + 1.16667 NA Intergenic L1ME2z|LINE|L1 -11889 NM_001946 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 182.167-26 chr2 209149642 209149937 + 1.16667 NA Intergenic Intergenic -274258 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 125-26 chr13 65178634 65178793 + 1.16667 NA Intergenic Intergenic -687334 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 150-57 chr3 183208728 183208939 + 1.16667 NA intron (NM_015078, intron 22 of 29) intron (NM_015078, intron 22 of 29) -44420 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 154.167-39 chr20 53197876 53198071 + 1.16667 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 12690 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 277.334 chr14 71064094 71064377 + 1.16667 NA intron (NM_014982, intron 26 of 35) intron (NM_014982, intron 26 of 35) 156776 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 267.834-4 chr5 133405694 133406034 + 1.16667 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 21842 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 156.5-40 chr18 3891872 3892048 + 1.16667 NA intron (NM_001242761, intron 3 of 11) AluJr4|SINE|Alu 6607 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 380.334-2 chr22 22907754 22908324 + 1.16667 NA Intergenic Intergenic 20223 NM_001178126 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 214.833-23 chr7 40812634 40813028 + 1.16667 NA intron (NM_024728, intron 14 of 14) L1PA16|LINE|L1 167108 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 220.667-28 chr5 23771939 23772277 + 1.16667 NA Intergenic L1MB7|LINE|L1 -179240 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 241.667-20 chr21 22382164 22382596 + 1.16667 NA Intergenic L1MC3|LINE|L1 283763 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 228.667-17 chr17 58291364 58291653 + 1.16667 NA Intergenic L1M5|LINE|L1 -10573 NM_000250 4353 Hs.458272 NM_000250 ENSG00000005381 MPO - myeloperoxidase protein-coding 163.334-5 chr5 152681467 152681802 + 1.16667 NA intron (NR_109877, intron 4 of 4) L1MB7|LINE|L1 -276355 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 245.5-16 chr4 75562681 75562981 + 1.16667 NA intron (NM_001206981, intron 2 of 2) intron (NM_001206981, intron 2 of 2) 6765 NR_046429 152816 Hs.24510 NM_178497 ENSG00000174792 ODAPH AI2A4|C4orf26 odontogenesis associated phosphoprotein protein-coding 331.167-4 chr8 58339512 58339881 + 1.16667 NA Intergenic L1MD1|LINE|L1 -67595 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 172.833-8 chr11 110812773 110813043 + 1.16667 NA Intergenic Intergenic -99719 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 338.501 chr8 95952104 95952632 + 1.16667 NA Intergenic Intergenic -4020 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 268.5-19 chr9 76295597 76295951 + 1.16667 NA intron (NM_001190482, intron 26 of 36) intron (NM_001190482, intron 26 of 36) 98652 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 240.667-40 chr6 142139642 142140140 + 1.16667 NA intron (NM_001324308, intron 1 of 2) intron (NM_001324308, intron 1 of 2) 6732 NM_001358410 100126572 NM_001358410 ENSG00000203733 GJE1 CX23 gap junction protein epsilon 1 protein-coding 149-64 chr5 82381343 82381535 + 1.16667 NA Intergenic Intergenic 101977 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 197.834-9 chr3 119509318 119509578 + 1.16667 NA intron (NM_016589, intron 4 of 6) L1MB7|LINE|L1 10901 NM_016589 51300 Hs.477287 NM_016589 ENSG00000113845 TIMMDC1 C3orf1|MC1DN31 translocase of inner mitochondrial membrane domain containing 1 protein-coding 164.167-16 chr13 69566418 69566610 + 1.16667 NA Intergenic L1ME2|LINE|L1 344168 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 300.834 chr10 19394385 19394833 + 1.16667 NA intron (NM_001142308, intron 28 of 39) intron (NM_001142308, intron 28 of 39) 333941 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 210.333-20 chr2 221055956 221056220 + 1.16667 NA Intergenic Intergenic 516216 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 139.167-51 chr3 739182 739422 + 1.16667 NA intron (NR_110118, intron 1 of 3) L1M4c|LINE|L1 147197 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 238.167-6 chr12 48214321 48214729 + 1.16667 NA Intergenic L1MA8|LINE|L1 -11233 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 357.334-4 chr7 134687767 134688229 + 1.16667 NA Intergenic AluSq2|SINE|Alu 41145 NM_001724 669 Hs.198365 NM_001724 ENSG00000172331 BPGM DPGM|ECYT8 bisphosphoglycerate mutase protein-coding 272.667-11 chr3 144933137 144933393 + 1.16667 NA Intergenic L1MA2|LINE|L1 960184 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 249.167-8 chr3 73253281 73253716 + 1.16667 NA Intergenic L1MEf|LINE|L1 180497 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 186.5-30 chr16 6365779 6366076 + 1.16667 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 346224 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 212.5-3 chr10 110056575 110057058 + 1.16667 NA intron (NM_001121, intron 1 of 13) intron (NM_001121, intron 1 of 13) -48435 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 231.667-32 chr8 120584502 120584978 + 1.16667 NA intron (NM_021021, intron 3 of 6) MLT1C|LTR|ERVL-MaLR 139321 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 248.5-16 chr5 51656216 51656675 + 1.16667 NA Intergenic Tigger15a|DNA|TcMar-Tigger 272997 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 231.833-18 chr9 30116034 30116528 + 1.16667 NA Intergenic Intergenic 292173 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 113.333-60 chr20 36481635 36481789 + 1.16667 NA intron (NM_183006, intron 1 of 6) intron (NM_183006, intron 1 of 6) 19917 NM_183006 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 235.167-27 chr6 69106449 69106743 + 1.16667 NA intron (NM_001704, intron 17 of 31) intron (NM_001704, intron 17 of 31) 471314 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 183.667-69 chr6 102412349 102412592 + 1.16667 NA Intergenic Intergenic 1013485 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 122.833-49 chr20 23395605 23395738 + 1.16667 NA intron (NM_001283020, intron 2 of 9) intron (NM_001283020, intron 2 of 9) 25817 NR_104266 63908 Hs.269471 NM_022080 ENSG00000125814 NAPB SNAP-BETA|SNAPB NSF attachment protein beta protein-coding 282.334-2 chr16 77858515 77858831 + 1.16667 NA intron (NM_020927, intron 3 of 8) MIRc|SINE|MIR 70109 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 185-35 chr3 34517687 34517916 + 1.16667 NA Intergenic MLT1E3|LTR|ERVL-MaLR 719171 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 189.167-31 chr3 103736256 103736555 + 1.16667 NA Intergenic Intergenic -212289 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 297.333-7 chr4 160497271 160497713 + 1.16667 NA Intergenic L1MEd|LINE|L1 -719708 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 298.5-18 chr5 53062734 53063176 + 1.16667 NA intron (NR_073106, intron 13 of 29) intron (NR_073106, intron 13 of 29) 46802 NM_176806 4338 Hs.163645 NM_004531 ENSG00000164172 MOCS2 MCBPE|MOCO1|MOCODB|MPTS molybdenum cofactor synthesis 2 protein-coding 197-18 chr16 2415674 2415963 + 1.16667 NA intron (NR_003574, intron 13 of 16) L1ME3G|LINE|L1 -13629 NM_001761 899 Hs.1973 NM_001761 ENSG00000162063 CCNF FBX1|FBXO1 cyclin F protein-coding 429.834 chr14 84554558 84555208 + 1.16667 NA Intergenic Intergenic -717049 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 208.667-13 chr12 125218264 125218455 + 1.16667 NA intron (NM_001366854, intron 1 of 8) intron (NM_001366854, intron 1 of 8) 31973 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 146.167-40 chr3 149532151 149532346 + 1.16667 NA intron (NM_001348362, intron 7 of 9) MIR|SINE|MIR 57551 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 255-20 chr5 66621118 66621371 + 1.16667 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) 24851 NM_001290228 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 230.334-4 chr8 67562855 67563202 + 1.16667 NA intron (NM_020361, intron 2 of 10) L2b|LINE|L2 183332 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 154.167-34 chr2 208118943 208119153 + 1.16667 NA promoter-TSS (NR_038437) promoter-TSS (NR_038437) -81 NR_038437 100507443 Hs.570295 NR_038437 LOC100507443 - uncharacterized LOC100507443 ncRNA 288.667-6 chr20 46455108 46455531 + 1.16667 NA Intergenic MER20B|DNA|hAT-Charlie 2324 NR_045983 100130934 Hs.712133 NM_173643 ZNF663P ZNF663 zinc finger protein 663, pseudogene pseudo 246.667-4 chr1 188569063 188569311 + 1.16667 NA Intergenic AluY|SINE|Alu 1125559 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 186.834-6 chr5 12210867 12211130 + 1.16667 NA Intergenic L1MA5A|LINE|L1 -306552 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 210.667-54 chr8 109345855 109346107 + 1.16667 NA TTS (NR_036471) TTS (NR_036471) 11634 NM_020189 56943 Hs.492555 NM_020189 ENSG00000120533 ENY2 DC6|Sus1|e(y)2 ENY2 transcription and export complex 2 subunit protein-coding 115.667-105 chr6 73075104 73075265 + 1.16667 NA intron (NM_001160132, intron 3 of 13) intron (NM_001160132, intron 3 of 13) 68330 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 176.334-5 chr2 8747557 8747858 + 1.16667 NA intron (NR_145964, intron 25 of 31) intron (NR_145964, intron 25 of 31) 65651 NM_002166 3398 Hs.180919 NM_002166 ENSG00000115738 ID2 GIG8|ID2A|ID2H|bHLHb26 inhibitor of DNA binding 2 protein-coding 118.333-93 chr5 72401202 72401424 + 1.16667 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat 80940 NM_024754 79810 Hs.126906 NM_024754 ENSG00000049883 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 273.167-7 chr14 71070467 71070911 + 1.16667 NA intron (NM_014982, intron 26 of 35) Tigger1|DNA|TcMar-Tigger 163230 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 191.167 chr10 33819158 33819356 + 1.16667 NA Intergenic Intergenic -46577 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 244.167-20 chr7 52814412 52814891 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -220982 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 236.5-4 chr1 219226400 219226665 + 1.16667 NA Intergenic MER117|DNA|hAT-Charlie 51563 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 238.001-3 chr7 29466908 29467243 + 1.16667 NA intron (NM_001293072, intron 6 of 12) L1ME4c|LINE|L1 -12637 NM_001293079 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 193-11 chr11 83771769 83772081 + 1.16667 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) -89500 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 131.334-2 chr18 45314209 45314336 + 1.16667 NA intron (NM_001371319, intron 4 of 23) intron (NM_001371319, intron 4 of 23) 101277 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 145.833-46 chr22 32102369 32102619 + 1.16667 NA intron (NM_000343, intron 13 of 14) L1MA3|LINE|L1 -19483 NR_040114 23782 Hs.581098 NR_040114 ENSG00000234479 AP1B1P1 ADTB1L1|dJ127L4.2 AP1B1 pseudogene 1 pseudo 181.834 chr1 98919623 98919887 + 1.16667 NA intron (NM_001037317, intron 4 of 5) intron (NM_001037317, intron 4 of 5) -84521 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 176.667-17 chr11 108582905 108583189 + 1.16667 NA intron (NM_015065, intron 1 of 5) MLT1C|LTR|ERVL-MaLR 10721 NM_001308019 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 115.667-88 chr4 101391846 101391977 + 1.16667 NA Intergenic L1PB3|LINE|L1 44134 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 133.834-3 chr16 58373109 58373250 + 1.16667 NA Intergenic Intergenic -19292 NM_022770 64785 Hs.47125 NM_022770 ENSG00000181938 GINS3 PSF3 GINS complex subunit 3 protein-coding 183.334-5 chr9 28672962 28673181 + 1.16667 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 46234 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 258-9 chr9 31615697 31615996 + 1.16667 NA Intergenic Intergenic -234356 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 228.001-2 chr9 16899499 16899720 + 1.16667 NA Intergenic Intergenic -28939 NM_001317940 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 243.167-4 chr10 81805758 81806088 + 1.16667 NA Intergenic Intergenic -69271 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 164.667-56 chr5 96922908 96923179 + 1.16667 NA Intergenic AluJr4|SINE|Alu -13037 NM_005575 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 226.167-32 chr8 124053535 124053875 + 1.16667 NA intron (NM_001039112, intron 22 of 40) AluJb|SINE|Alu -12923 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 247.5 chr1 45640181 45640467 + 1.16667 NA exon (NM_021639, exon 8 of 13) exon (NM_021639, exon 8 of 13) 6361 NR_026768 728963 Hs.675157 NR_026768 RPS15AP10 RPS15A_4_42 ribosomal protein S15a pseudogene 10 pseudo 175.667-50 chr4 91425049 91425235 + 1.16667 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 852160 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 150.833-6 chr12 25109272 25109479 + 1.16667 NA intron (NR_147909, intron 14 of 14) intron (NR_147909, intron 14 of 14) 56669 NM_006152 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 244.5-6 chr13 38707709 38708039 + 1.16667 NA intron (NM_207361, intron 2 of 23) intron (NM_207361, intron 2 of 23) 20797 NM_207361 341640 Hs.253994 NM_207361 ENSG00000150893 FREM2 CRYPTOP|FRASRS2 FRAS1 related extracellular matrix 2 protein-coding 228.667-14 chr16 64608003 64608382 + 1.16667 NA Intergenic Intergenic 513871 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 216.667-3 chr10 60478398 60478759 + 1.16667 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -88703 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 347.834 chr10 69606635 69607111 + 1.16667 NA Intergenic L1MD1|LINE|L1 -23374 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 285.334-3 chr11 105174799 105175224 + 1.16667 NA Intergenic Intergenic -35242 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 166.5-13 chr12 65268507 65268671 + 1.16667 NA Intergenic Intergenic -10094 NM_001193460 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 158.834 chr17 34988673 34988890 + 1.16667 NA intron (NM_013975, intron 3 of 19) intron (NM_013975, intron 3 of 19) 8269 NM_013975 3980 Hs.100299 NM_002311 ENSG00000005156 LIG3 LIG2|LIG3alpha DNA ligase 3 protein-coding 220.667-34 chr5 150304414 150304655 + 1.16667 NA Intergenic Intergenic -1629 NM_001012301 340075 Hs.591252 NM_001012301 ENSG00000183876 ARSI ASI|SPG66 arylsulfatase family member I protein-coding 455.835 chr2 51624634 51625078 + 1.16667 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 592255 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 125.334-2 chr4 180096171 180096436 + 1.16667 NA Intergenic Intergenic 1062846 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 138.667-107 chr8 117959733 117959916 + 1.16667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -38911 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 258.667-3 chr1 163556152 163556382 + 1.16667 NA Intergenic L1MEc|LINE|L1 -133076 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 137-63 chr2 193212241 193212600 + 1.16667 NA Intergenic Intergenic 462575 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 138.5-4 chr1 79150158 79150347 + 1.16667 NA Intergenic A-rich|Low_complexity|Low_complexity -143522 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 175.834 chr10 72238597 72238799 + 1.16667 NA Intergenic Intergenic -21564 NM_001369085 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 248.5-10 chr3 56239684 56239958 + 1.16667 NA intron (NR_132749, intron 3 of 17) intron (NR_132749, intron 3 of 17) 228646 NM_015576 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 162.167-18 chr18 14926996 14927218 + 1.16667 NA Intergenic Intergenic -19160 NR_104164 400644 Hs.514732 NR_104164 ENSG00000266554 LINC01443 - long intergenic non-protein coding RNA 1443 ncRNA 306.5 chr11 23053827 23054232 + 1.16667 NA Intergenic Intergenic -193555 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 196.334-2 chr1 241166170 241166369 + 1.16667 NA intron (NM_001282778, intron 2 of 16) L2b|LINE|L2 33997 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 188.167-9 chr12 74249165 74249515 + 1.16667 NA intron (NR_038300, intron 3 of 6) intron (NR_038300, intron 3 of 6) 43291 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 165.667-47 chr4 47315560 47315746 + 1.16667 NA intron (NM_000812, intron 4 of 8) L1PA15|LINE|L1 148049 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 211.167-2 chr1 151220186 151220457 + 1.16667 NA intron (NM_001135637, intron 1 of 13) intron (NM_001135637, intron 1 of 13) 21769 NM_001135638 8394 Hs.655131 NM_003557 ENSG00000143398 PIP5K1A - phosphatidylinositol-4-phosphate 5-kinase type 1 alpha protein-coding 184.333-47 chr5 51197809 51198054 + 1.16667 NA Intergenic Intergenic 185401 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 189.167-14 chr12 107734450 107734640 + 1.16667 NA intron (NM_012406, intron 11 of 11) intron (NM_012406, intron 11 of 11) -2010 NR_120474 101929162 Hs.667028 NR_120474 ENSG00000258136 LOC101929162 - uncharacterized LOC101929162 ncRNA 271-6 chr22 27021250 27021606 + 1.16667 NA Intergenic MER5A|DNA|hAT-Charlie 39090 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 155.667-75 chr7 75673952 75674198 + 1.16667 NA intron (NM_005338, intron 1 of 30) L1MB3|LINE|L1 64866 NM_001243198 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 140.333-93 chr8 140765327 140765560 + 1.16667 NA intron (NM_001352718, intron 14 of 32) intron (NM_001352718, intron 14 of 32) -32790 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 211-13 chr12 24383282 24383631 + 1.16667 NA intron (NM_152989, intron 2 of 17) Tigger7|DNA|TcMar-Tigger 160185 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 225.334-4 chr2 97848046 97848517 + 1.16667 NA intron (NM_015348, intron 5 of 40) L1MC3|LINE|L1 113875 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 259.667-15 chr2 202045289 202045822 + 1.16667 NA Intergenic L3|LINE|CR1 10968 NM_003507 8324 Hs.173859 NM_003507 ENSG00000155760 FZD7 FzE3 frizzled class receptor 7 protein-coding 187.167-15 chr2 66554352 66555008 + 1.16667 NA intron (NM_002398, intron 9 of 12) intron (NM_002398, intron 9 of 12) -19350 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 158.667-90 chr8 100801777 100801975 + 1.16667 NA Intergenic MIRb|SINE|MIR -79788 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 228.5-35 chr8 19205687 19205925 + 1.16667 NA intron (NR_038919, intron 3 of 4) L1PA16|LINE|L1 39716 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 153.5-73 chr8 50537467 50537679 + 1.16667 NA intron (NR_135797, intron 11 of 20) L1MDa|LINE|L1 373442 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 163.334 chr15 65648215 65648461 + 1.16667 NA intron (NM_001254740, intron 3 of 6) intron (NM_001254740, intron 3 of 6) 5459 NM_001254740 9187 Hs.173092 NM_004727 ENSG00000074621 SLC24A1 CSNB1D|HsT17412|NCKX|NCKX1|RODX solute carrier family 24 member 1 protein-coding 233.834-11 chr4 104872373 104872700 + 1.16667 NA Intergenic L1MC3|LINE|L1 -273339 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 141.834-2 chr13 66117590 66117960 + 1.16667 NA Intergenic Intergenic -100475 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 135-73 chr4 65556469 65556649 + 1.16667 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 112929 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 199.833-22 chr5 9889078 9889419 + 1.16667 NA intron (NR_027112, intron 2 of 12) L1MEb|LINE|L1 14576 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 399.667-2 chr11 108681006 108681465 + 1.16667 NA intron (NM_004398, intron 6 of 17) intron (NM_004398, intron 6 of 17) 16166 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 155.333-12 chr10 34871802 34872072 + 1.16667 NA Intergenic AluSz|SINE|Alu 56169 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 195.334-6 chr2 143827992 143828200 + 1.16667 NA Intergenic Intergenic -108971 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 144-10 chr11 31359536 31359830 + 1.16667 NA intron (NM_181807, intron 1 of 8) MIRc|SINE|MIR 10056 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 317.834-2 chr19 47571796 47572154 + 1.16667 NA 5' UTR (NM_001277075, exon 2 of 17) 5' UTR (NM_001277075, exon 2 of 17) 1173 NM_001277075 84215 Hs.14161 NM_032255 ENSG00000118156 ZNF541 - zinc finger protein 541 protein-coding 259-24 chr8 100825143 100825529 + 1.16667 NA Intergenic Intergenic -103248 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 140.167-38 chr20 58036952 58037180 + 1.16667 NA Intergenic AluJb|SINE|Alu 33162 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 287.334-2 chr5 107246248 107246585 + 1.16667 NA Intergenic L2a|LINE|L2 -235402 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 244.667-16 chr3 7670716 7671035 + 1.16667 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -135591 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 176-49 chr8 97979161 97979418 + 1.16667 NA intron (NM_001317748, intron 6 of 17) intron (NM_001317748, intron 6 of 17) 62928 NR_002581 26775 Hs.684855 NR_002581 ENSG00000207067 SNORA72 RNU72|U72 small nucleolar RNA, H/ACA box 72 snoRNA 154.667-58 chr6 63898993 63899140 + 1.16667 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 92230 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 267.334-4 chr5 24027462 24028302 + 1.16667 NA intron (NR_131245, intron 4 of 4) L1PB1|LINE|L1 76534 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 320.5-6 chr5 24692844 24693349 + 1.16667 NA Intergenic Intergenic -48118 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 263.5-14 chr2 181215414 181215724 + 1.16667 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 90083 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 361.501 chr5 93841272 93841741 + 1.16667 NA intron (NM_032042, intron 7 of 10) MER2|DNA|TcMar-Tigger -99906 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 236.834-7 chr22 25653339 25653561 + 1.16667 NA intron (NM_005160, intron 3 of 20) L1MEg|LINE|L1 -88738 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 135.334-4 chr2 235917584 235917742 + 1.16667 NA intron (NM_014914, intron 11 of 16) intron (NM_014914, intron 11 of 16) 250723 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 121.5-73 chr4 36767243 36767563 + 1.16667 NA Intergenic Intergenic -125503 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 176.334-9 chr5 128121085 128121350 + 1.16667 NA intron (NM_001046, intron 4 of 26) intron (NM_001046, intron 4 of 26) 37451 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 291.167-7 chr5 174106158 174106502 + 1.16667 NA intron (NM_015980, intron 4 of 4) L1MC5a|LINE|L1 60624 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 338.5-6 chr4 30514750 30515284 + 1.16667 NA Intergenic Intergenic -205352 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 156.667-18 chr10 76598638 76598831 + 1.16667 NA Intergenic MLT2C1|LTR|ERVL -289310 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 181.334-3 chr4 40969345 40969544 + 1.16667 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -112252 NM_001166053 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 243-3 chr10 33613470 33613817 + 1.16667 NA Intergenic AluSx|SINE|Alu 159037 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 184.5 chr1 38154442 38154670 + 1.16667 NA Intergenic L2c|LINE|L2 60211 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 286.5-9 chr3 60786803 60787412 + 1.16667 NA intron (NR_148921, intron 4 of 4) intron (NR_148921, intron 4 of 4) -169237 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 299.834-2 chr8 121850080 121850543 + 1.16667 NA Intergenic Intergenic -208871 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 239.667-14 chr18 2517923 2518238 + 1.16667 NA Intergenic LTR84b|LTR|ERVL 53425 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 319.001 chr1 69601695 69602020 + 1.16667 NA intron (NM_001366842, intron 1 of 7) intron (NM_001366842, intron 1 of 7) 32516 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 186.667-61 chr4 142693674 142693979 + 1.16667 NA intron (NM_003866, intron 2 of 26) HERV35I-int|LTR|ERV1 152709 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 155.5-29 chr2 63483191 63483343 + 1.16667 NA intron (NR_148704, intron 7 of 18) intron (NR_148704, intron 7 of 18) -45260 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 160.333-21 chr17 77126520 77126774 + 1.16667 NA intron (NM_001204410, intron 2 of 17) intron (NM_001204410, intron 2 of 17) -14322 NM_001143998 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 457-2 chr7 36898463 36899082 + 1.16667 NA intron (NM_001206480, intron 16 of 21) L2c|LINE|L2 20660 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 294.333-4 chr10 94985580 94985995 + 1.16667 NA intron (NM_000771, intron 7 of 8) intron (NM_000771, intron 7 of 8) 47129 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 193.667-49 chr7 49337187 49337466 + 1.16667 NA Intergenic Intergenic 412779 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 124.667-104 chr5 144271005 144271184 + 1.16667 NA intron (NM_001370487, intron 2 of 2) L1MB2|LINE|L1 65703 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 189.333-24 chr2 76351852 76352157 + 1.16667 NA Intergenic Intergenic -633961 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 114.667-7 chr1 182381380 182381580 + 1.16667 NA 3' UTR (NM_002065, exon 8 of 8) 3' UTR (NM_002065, exon 8 of 8) 9924 NM_001033056 2752 Hs.132016 NM_002065 ENSG00000135821 GLUL GLNS|GS|PIG43|PIG59 glutamate-ammonia ligase protein-coding 178.833-3 chr1 75617561 75617892 + 1.16667 NA Intergenic Intergenic -1563 NM_001320283 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 154.333-37 chr2 52148780 52149024 + 1.16667 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -221746 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 150.5-61 chr5 23571372 23571698 + 1.16667 NA Intergenic L1MEd|LINE|L1 63880 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 256.5-15 chr2 108793270 108793640 + 1.16667 NA intron (NM_144978, intron 4 of 14) L1ME4b|LINE|L1 6684 NR_147236 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 315.667-7 chr2 82518741 82519085 + 1.16667 NA Intergenic L1M2|LINE|L1 -337890 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 223.5-6 chr11 12237892 12238300 + 1.16667 NA intron (NR_144420, intron 16 of 27) intron (NR_144420, intron 16 of 27) -48804 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 254.667-25 chr5 116441557 116441970 + 1.16667 NA Intergenic AluSc|SINE|Alu -5735 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 139.5-41 chr3 158710759 158711001 + 1.16667 NA exon (NM_002888, exon 3 of 4) exon (NM_002888, exon 3 of 4) 21577 NM_206963 5918 Hs.131269 NM_002888 ENSG00000118849 RARRES1 LXNL|PERG-1|TIG1 retinoic acid receptor responder 1 protein-coding 234.5-18 chr2 233467121 233467480 + 1.16667 NA intron (NM_152879, intron 28 of 29) intron (NM_152879, intron 28 of 29) 79146 NM_003648 8527 Hs.471675 NM_003648 ENSG00000077044 DGKD DGKdelta|dgkd-2 diacylglycerol kinase delta protein-coding 425.001 chr21 32425405 32426007 + 1.16667 NA intron (NM_001320744, intron 1 of 5) intron (NM_001320744, intron 1 of 5) 13000 NR_135467 59271 Hs.208358 NM_058187 ENSG00000166979 EVA1C B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21 eva-1 homolog C protein-coding 284.5-6 chr17 44434684 44435285 + 1.16667 NA intron (NM_001002909, intron 5 of 7) intron (NM_001002909, intron 5 of 7) 1867 NM_001304943 23131 Hs.463129 NM_001002909 ENSG00000186566 GPATCH8 GPATC8|KIAA0553 G-patch domain containing 8 protein-coding 407.167-4 chr15 71667058 71667633 + 1.16667 NA intron (NM_001286429, intron 2 of 11) intron (NM_001286429, intron 2 of 11) 24194 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 202.333-32 chr4 31261026 31261495 + 1.16667 NA Intergenic Intergenic 90116 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 221-7 chr12 96979612 96980024 + 1.16667 NA Intergenic Intergenic 72352 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 202.334-4 chr18 66110342 66110537 + 1.16667 NA Intergenic Intergenic 359427 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 224.667-13 chr18 68011398 68011769 + 1.16667 NA Intergenic Intergenic -196761 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 157.334-4 chr2 76685390 76685586 + 1.16667 NA Intergenic Intergenic -300477 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 131-68 chr8 5465442 5465560 + 1.16667 NA Intergenic L1MC4a|LINE|L1 -470587 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 135.333-54 chr4 11176247 11176483 + 1.16667 NA Intergenic Intergenic -192462 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 268.333-17 chr9 11556965 11557420 + 1.16667 NA Intergenic L1M3d|LINE|L1 943986 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 186-14 chr14 62086910 62087154 + 1.16667 NA intron (NM_001367661, intron 8 of 8) Tigger16a|DNA|TcMar-Tigger -30325 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 139.667-70 chr4 45296124 45296272 + 1.16667 NA Intergenic Intergenic -569564 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 338.834 chr6 162520945 162521267 + 1.16667 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -206026 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 286.834-2 chr21 29386226 29386632 + 1.16667 NA Intergenic L2a|LINE|L2 13928 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 248.834-9 chr4 116735231 116735598 + 1.16667 NA Intergenic Intergenic 350162 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 148.334-3 chr18 64802608 64802743 + 1.16667 NA Intergenic L1MD2|LINE|L1 -542620 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 193.667-2 chr1 150821855 150822032 + 1.16667 NA intron (NM_001286036, intron 14 of 21) AluSz|SINE|Alu -13683 NM_000396 1513 Hs.632466 NM_000396 ENSG00000143387 CTSK CTS02|CTSO|CTSO1|CTSO2|PKND|PYCD cathepsin K protein-coding 418.334-3 chr6 12996923 12998004 + 1.16667 NA intron (NM_001322313, intron 1 of 12) intron (NM_001322313, intron 1 of 12) -16091 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 218.167-19 chr3 105736906 105737322 + 1.16667 NA intron (NR_135809, intron 8 of 18) intron (NR_135809, intron 8 of 18) 130477 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 329.001-2 chr11 32862262 32862577 + 1.16667 NA Intergenic Intergenic -30392 NM_001076786 79832 Hs.369368 NM_024774 ENSG00000060749 QSER1 - glutamine and serine rich 1 protein-coding 218.5-16 chr2 16520290 16520650 + 1.16667 NA Intergenic Intergenic 145364 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 201.667-17 chr15 90799279 90799648 + 1.16667 NA intron (NM_001287247, intron 17 of 19) HAL1|LINE|L1 -69125 NM_002569 5045 Hs.513153 NM_002569 ENSG00000140564 FURIN FUR|PACE|PCSK3|SPC1 furin, paired basic amino acid cleaving enzyme protein-coding 320.001-3 chr18 13599803 13600120 + 1.16667 NA intron (NM_181482, intron 4 of 5) Charlie21a|DNA|hAT-Charlie -11153 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 265.334-15 chr7 81854742 81855140 + 1.16667 NA Intergenic Intergenic -84894 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 249.5-18 chr20 52294929 52295301 + 1.16667 NA Intergenic Intergenic -103130 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 256.334-3 chr2 53017331 53017603 + 1.16667 NA Intergenic L1ME2|LINE|L1 -314852 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 262.5-18 chr3 181286435 181286930 + 1.16667 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 54945 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 253.667-22 chr8 116774643 116775033 + 1.16667 NA TTS (NM_032334) TTS (NM_032334) 8314 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23 small subunit processome component protein-coding 138.334-5 chr2 102927210 102927337 + 1.16667 NA Intergenic Intergenic -31551 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 279-13 chr8 143621667 143622185 + 1.16667 NA Intergenic MER1B|DNA|hAT-Charlie -4377 NM_003313 7264 Hs.404119 NM_003313 ENSG00000104522 TSTA3 FX|P35B|SDR4E1 tissue specific transplantation antigen P35B protein-coding 150.667-31 chr14 65935517 65935694 + 1.16667 NA Intergenic L1ME4a|LINE|L1 464503 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 162.667-45 chr2 214579223 214579377 + 1.16667 NA TTS (NM_001345929) TTS (NM_001345929) 69118 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 232.333 chr1 28723888 28724197 + 1.16667 NA Intergenic Intergenic -12579 NM_001173128 51441 Hs.532286 NM_016258 ENSG00000198492 YTHDF2 CAHL|HGRG8|NY-REN-2 YTH N6-methyladenosine RNA binding protein 2 protein-coding 231.833-11 chr21 33706983 33707375 + 1.16667 NA intron (NM_001001132, intron 1 of 29) intron (NM_001001132, intron 1 of 29) 64678 NM_001331011 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 214.667-20 chr2 174837255 174837714 + 1.16667 NA intron (NM_001025201, intron 7 of 12) intron (NM_001025201, intron 7 of 12) 10134 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 187.667-42 chr5 104181198 104181513 + 1.16667 NA Intergenic HUERS-P3-int|LTR|ERV1 -618566 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 256.501-2 chr7 78249510 78249824 + 1.16667 NA intron (NM_001301128, intron 10 of 20) L1MA6|LINE|L1 -97575 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 202-18 chr2 43444793 43445070 + 1.16667 NA intron (NM_001083953, intron 26 of 37) intron (NM_001083953, intron 26 of 37) 151043 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 244-5 chr11 132120394 132120697 + 1.16667 NA intron (NR_147849, intron 2 of 6) intron (NR_147849, intron 2 of 6) -163757 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 218.667-24 chr3 142265704 142266011 + 1.16667 NA Intergenic LTR40a|LTR|ERVL -40272 NR_033289 256356 Hs.135904 NM_152776 ENSG00000175066 GK5 - glycerol kinase 5 protein-coding 301.833 chr10 122562274 122562784 + 1.16667 NA intron (NM_004406, intron 1 of 39) intron (NM_004406, intron 1 of 39) 1775 NM_001320644 1755 Hs.279611 NM_004406 ENSG00000187908 DMBT1 GP340|SAG|SALSA|muclin deleted in malignant brain tumors 1 protein-coding 340.5-5 chr4 26669112 26669705 + 1.16667 NA intron (NM_001292054, intron 6 of 17) intron (NM_001292054, intron 6 of 17) 85324 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 124.167-12 chr10 118271927 118272123 + 1.16667 NA Intergenic Intergenic 70299 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 125-78 chr6 98350476 98350586 + 1.16667 NA Intergenic Intergenic 326000 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 238.667-19 chr22 27922267 27922562 + 1.16667 NA intron (NR_026962, intron 2 of 2) intron (NR_026962, intron 2 of 2) -1802 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 345.5-7 chr7 5181143 5181638 + 1.16667 NA Intergenic L1MA7|LINE|L1 -8843 NM_001278299 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 222.667-26 chr4 84727579 84728129 + 1.16667 NA intron (NM_014991, intron 44 of 67) intron (NM_014991, intron 44 of 67) 144727 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 265-2 chr1 90551786 90552105 + 1.16667 NA Intergenic MLT1M|LTR|ERVL-MaLR -105805 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 236.334-8 chr20 14771807 14772245 + 1.16667 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 157492 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 164-64 chr7 3215412 3215704 + 1.16667 NA Intergenic Intergenic -56985 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 187.5-11 chr13 75078290 75078466 + 1.16667 NA Intergenic HAL1|LINE|L1 162003 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 257.167-6 chr2 177563406 177563670 + 1.16667 NA Intergenic L1ME3F|LINE|L1 -10742 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 306.334-2 chr19 48232564 48232959 + 1.16667 NA intron (NM_001351788, intron 4 of 10) MER3|DNA|hAT-Charlie 8302 NR_033679 22900 Hs.68846 NM_014959 ENSG00000105483 CARD8 CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN caspase recruitment domain family member 8 protein-coding 206.167-20 chr5 84883254 84883562 + 1.16667 NA Intergenic Intergenic -498528 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 142.667-74 chr4 121012112 121012261 + 1.16667 NA Intergenic MIR3|SINE|MIR 60349 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 152.334-3 chr11 90535288 90535491 + 1.16667 NA intron (NR_104190, intron 1 of 6) L1MC3|LINE|L1 20468 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 139.5-26 chr2 36419838 36420077 + 1.16667 NA intron (NM_016441, intron 2 of 16) intron (NM_016441, intron 2 of 16) 64179 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 208.5-22 chr2 23964828 23965018 + 1.16667 NA intron (NM_181713, intron 2 of 6) AluJb|SINE|Alu 24460 NM_181713 165324 Hs.591576 NM_181713 ENSG00000173960 UBXN2A UBXD4 UBX domain protein 2A protein-coding 154.5-26 chr17 51759764 51759980 + 1.16667 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 324445 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 385.834 chr2 49389456 49390344 + 1.16667 NA Intergenic L1PREC2|LINE|L1 -235373 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 349.667 chr1 167335553 167336265 + 1.16667 NA intron (NM_001198783, intron 2 of 15) Tigger2|DNA|TcMar-Tigger 6839 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 317.834 chr1 174474131 174474502 + 1.16667 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 26352 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 240.333-11 chr15 71039712 71039987 + 1.16667 NA intron (NM_017691, intron 15 of 15) L1M5|LINE|L1 -101600 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 179.834-3 chr11 81746170 81746353 + 1.16667 NA Intergenic Intergenic 144575 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 225.834-2 chr4 64586176 64586404 + 1.16667 NA Intergenic Intergenic -176830 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 166-15 chr11 29914289 29914465 + 1.16667 NA Intergenic MIRb|SINE|MIR 68016 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 253.501 chr12 118771433 118771713 + 1.16667 NA Intergenic L2b|LINE|L2 -9894 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 178-29 chr21 34810286 34810499 + 1.16667 NA intron (NM_001001890, intron 4 of 5) intron (NM_001001890, intron 4 of 5) 64567 NR_038886 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 lincRNA-uc002yug.2 long intergenic non-protein coding RNA 1426 ncRNA 229.167-39 chrX 44337442 44337898 + 1.16667 NA intron (NM_025184, intron 1 of 14) Charlie6|DNA|hAT-Charlie 6002 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 144.167-19 chr12 52745387 52745546 + 1.16667 NA Intergenic Intergenic 31879 NM_015848 51350 Hs.654392 NM_015848 ENSG00000185069 KRT76 HUMCYT2A|KRT2B|KRT2P keratin 76 protein-coding 511.667 chr7 4859057 4859708 + 1.16667 NA 3' UTR (NM_020144, exon 1 of 1) 3' UTR (NM_020144, exon 1 of 1) 2648 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 155-34 chr2 95136706 95136965 + 1.16667 NA Intergenic MER89-int|LTR|ERV1 -14808 NR_136153 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 282.167-7 chr16 64111265 64111604 + 1.16667 NA Intergenic L1MD3|LINE|L1 1010629 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 283.333-13 chr8 78829754 78830092 + 1.16667 NA Intergenic L1MA6|LINE|L1 -7606 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 236.667-7 chr12 16799506 16799883 + 1.16667 NA Intergenic MER20B|DNA|hAT-Charlie -189053 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 181.667-36 chr21 38538139 38538436 + 1.16667 NA intron (NR_111949, intron 3 of 4) L1MB3|LINE|L1 -39783 NM_001136155 2078 Hs.473819 NM_004449 ENSG00000157554 ERG erg-3|p55 ETS transcription factor ERG protein-coding 225.167-5 chr11 112743840 112744190 + 1.16667 NA Intergenic Intergenic -188213 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 161-35 chr20 53941785 53942126 + 1.16667 NA Intergenic Intergenic -66246 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 237.334 chr11 18466935 18467214 + 1.16667 NA intron (NM_001144071, intron 4 of 7) L2c|LINE|L2 11218 NM_144972 160287 Hs.668877 NM_144972 ENSG00000166800 LDHAL6A LDH6A lactate dehydrogenase A like 6A protein-coding 185.333-25 chr17 56130912 56131179 + 1.16667 NA Intergenic Intergenic -22430 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 262-28 chr9 4889496 4889819 + 1.16667 NA Intergenic Intergenic 39360 NR_029836 406894 NR_029836 ENSG00000199065 MIR101-2 MIRN101-2|mir-101-2 microRNA 101-2 ncRNA 183-40 chr4 45787146 45787531 + 1.16667 NA Intergenic Intergenic 336716 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 225.501 chr19 57595248 57595538 + 1.16667 NA Intergenic L1MC5|LINE|L1 -4492 NM_020880 348327 Hs.97111 NM_020880 ENSG00000183647 ZNF530 - zinc finger protein 530 protein-coding 169.5-69 chr7 120911587 120911840 + 1.16667 NA Intergenic L1MEf|LINE|L1 -39064 NM_198267 54556 Hs.489811 NM_019071 ENSG00000071243 ING3 Eaf4|ING2|MEAF4|p47ING3 inhibitor of growth family member 3 protein-coding 274.501 chr3 147564814 147565157 + 1.16667 NA Intergenic L1PB4|LINE|L1 143658 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 287-5 chr2 233123283 233123732 + 1.16667 NA intron (NM_005541, intron 3 of 26) intron (NM_005541, intron 3 of 26) 63165 NM_001017915 3635 Hs.262886 NM_005541 ENSG00000168918 INPP5D SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship inositol polyphosphate-5-phosphatase D protein-coding 261.167-13 chr2 238631131 238631446 + 1.16667 NA Intergenic AluSz6|SINE|Alu -75789 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 131.333-66 chr22 45806426 45806567 + 1.16667 NA intron (NM_013236, intron 9 of 11) intron (NM_013236, intron 9 of 11) 45972 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 335.667-3 chr17 54455780 54456141 + 1.16667 NA Intergenic MER57-int|LTR|ERV1 -444731 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 170.5-2 chr1 58865653 58865911 + 1.16667 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 80631 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 300.167-6 chr4 36546705 36547148 + 1.16667 NA intron (NR_149124, intron 3 of 4) MIR|SINE|MIR 94974 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 266.5-9 chr20 31186944 31187386 + 1.16667 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -70499 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 172.667-87 chrX 51199571 51199851 + 1.16667 NA Intergenic L1M5|LINE|L1 -28290 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 157.5-55 chr5 117274570 117274743 + 1.16667 NA Intergenic Intergenic -140856 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 169.667 chr1 99717124 99717374 + 1.16667 NA intron (NM_001013660, intron 11 of 16) intron (NM_001013660, intron 11 of 16) -4296 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 241.334-2 chr17 47162818 47163299 + 1.16667 NA intron (NR_148340, intron 2 of 16) intron (NR_148340, intron 2 of 16) 26237 NM_001353051 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 269.167-6 chr15 77778281 77778661 + 1.16667 NA intron (NM_001301186, intron 2 of 5) L2a|LINE|L2 8578 NM_001301195 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 251.334-6 chr7 40261543 40262226 + 1.16667 NA intron (NM_001193312, intron 7 of 12) intron (NM_001193312, intron 7 of 12) 126908 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 214.5-29 chr5 53369255 53369721 + 1.16667 NA Intergenic Intergenic -111141 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 243.667-8 chr11 37175943 37176236 + 1.16667 NA Intergenic Intergenic -577810 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 357.834 chr3 115451969 115452420 + 1.16667 NA Intergenic Intergenic -171316 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 244.334 chr1 53116567 53116940 + 1.16667 NA intron (NR_109858, intron 2 of 10) intron (NR_109858, intron 2 of 10) 25885 NM_001287596 6512 Hs.104637 NM_006671 ENSG00000162383 SLC1A7 AAAT|EAAT5 solute carrier family 1 member 7 protein-coding 232.5-27 chr4 86585348 86585699 + 1.16667 NA Intergenic Tigger13a|DNA|TcMar-Tigger -8792 NM_006264 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 282-16 chr22 45714344 45714778 + 1.16667 NA intron (NM_013236, intron 5 of 11) AluJr|SINE|Alu 42727 NM_013236 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 286.667-3 chr11 118593898 118594228 + 1.16667 NA intron (NM_001655, intron 8 of 9) U6|snRNA|snRNA -12373 NM_015157 23187 Hs.504062 NM_015157 ENSG00000019144 PHLDB1 LL5A pleckstrin homology like domain family B member 1 protein-coding 184.167-28 chr2 55231343 55231546 + 1.16667 NA promoter-TSS (NM_001135592) promoter-TSS (NM_001135592) -459 NM_001135592 6233 Hs.311640 NM_002954 ENSG00000143947 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 138.5-8 chr1 197724578 197724904 + 1.16667 NA intron (NR_125340, intron 2 of 19) L1MEd|LINE|L1 50739 NM_001300858 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 240.834-9 chr8 114627045 114627415 + 1.16667 NA Intergenic L1PB1|LINE|L1 1040783 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 192-42 chr6 100007182 100007464 + 1.16667 NA intron (NR_038384, intron 2 of 2) L2c|LINE|L2 -13085 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 185.667-56 chr7 106470122 106470415 + 1.16667 NA Intergenic L2|LINE|L2 -185285 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 197.667-50 chr7 37963512 37963851 + 1.16667 NA Intergenic Intergenic 42362 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 216.334-4 chr2 59454741 59454977 + 1.16667 NA Intergenic MIR1_Amn|SINE|MIR 237151 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 194.667-25 chr2 52495549 52495906 + 1.16667 NA Intergenic Intergenic 125079 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 222.667-28 chr5 43571629 43571946 + 1.16667 NA Intergenic LTR49-int|LTR|ERV1 -14368 NM_183323 10605 Hs.482038 NM_006451 ENSG00000172239 PAIP1 - poly(A) binding protein interacting protein 1 protein-coding 344.667-2 chr3 119078690 119079192 + 1.16667 NA intron (NM_152538, intron 3 of 8) L1PA15|LINE|L1 -44095 NM_001353321 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 271.167-10 chr2 124899177 124899797 + 1.16667 NA intron (NM_130773, intron 21 of 23) intron (NM_130773, intron 21 of 23) 874200 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 138.333-105 chr8 84584716 84584915 + 1.16667 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -121112 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 136.5-77 chr5 148572267 148572413 + 1.16667 NA intron (NM_001040172, intron 1 of 5) MIRb|SINE|MIR 64721 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 266.834-3 chr2 83467364 83467685 + 1.16667 NA Intergenic L2a|LINE|L2 -55290 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 162.333-70 chr7 41537016 41537360 + 1.16667 NA Intergenic (ACTCC)n|Simple_repeat|Simple_repeat -156731 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 247.334-2 chr13 106072679 106072998 + 1.16667 NA Intergenic MER47A|DNA|TcMar-Tigger -303726 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 238.167-7 chr13 72717566 72717856 + 1.16667 NA intron (NM_001071775, intron 2 of 2) MLT1B-int|LTR|ERVL-MaLR 9918 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 169-60 chr8 81583088 81583345 + 1.16667 NA Intergenic L1M2|LINE|L1 48061 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 167-15 chr11 32673755 32674018 + 1.16667 NA intron (NM_001008391, intron 9 of 17) LTR33|LTR|ERVL 90055 NM_001307929 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 365.333 chr13 64266354 64266850 + 1.16667 NA Intergenic MIR|SINE|MIR -190591 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 208.334-9 chr8 127046251 127046710 + 1.16667 NA Intergenic MER11A|LTR|ERVK 33326 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 300.334-2 chr15 59213600 59214105 + 1.16667 NA intron (NM_004998, intron 12 of 27) intron (NM_004998, intron 12 of 27) 7009 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 247.167-11 chr2 177717502 177717827 + 1.16667 NA intron (NM_001077197, intron 13 of 20) intron (NM_001077197, intron 13 of 20) 44342 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 239.501 chr8 87001162 87001369 + 1.16667 NA intron (NM_173538, intron 4 of 10) L1M7|LINE|L1 134850 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 168 chr1 41129995 41130194 + 1.16667 NA intron (NM_001172218, intron 7 of 15) L1MB3|LINE|L1 31338 NR_135092 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 229.501-2 chr5 41120338 41120559 + 1.16667 NA Intergenic AluJr|SINE|Alu -49106 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 158-46 chr6 128544986 128545160 + 1.16667 NA Intergenic L1ME1|LINE|L1 -24474 NM_001291981 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 159.5-49 chr8 58983539 58983818 + 1.16667 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 135469 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 223.834-4 chr2 71968147 71968391 + 1.16667 NA Intergenic L2|LINE|L2 179593 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 261.667-8 chr11 40399810 40400201 + 1.16667 NA intron (NM_020929, intron 2 of 4) L3|LINE|CR1 -106875 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 180.167-22 chr17 82486893 82487151 + 1.16667 NA intron (NM_001038618, intron 10 of 10) intron (NM_001038618, intron 10 of 10) 28281 NM_001083608 26502 Hs.256526 NM_012336 ENSG00000141562 NARF IOP2 nuclear prelamin A recognition factor protein-coding 165.667-67 chr7 69612449 69612674 + 1.16667 NA intron (NM_015570, intron 1 of 18) AluJo|SINE|Alu 14086 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 206.667-21 chr17 58242270 58242687 + 1.16667 NA intron (NR_027647, intron 1 of 11) intron (NR_027647, intron 1 of 11) 3894 NR_027647 4025 Hs.234742 NM_006151 ENSG00000167419 LPO SPO lactoperoxidase protein-coding 181.167-20 chr4 61658585 61658962 + 1.16667 NA intron (NM_001371343, intron 5 of 23) L2c|LINE|L2 456601 NM_001371342 166.167-18 chr16 12191634 12191828 + 1.16667 NA intron (NM_032167, intron 13 of 20) intron (NM_032167, intron 13 of 20) 214997 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 168.667-13 chr13 47245995 47246184 + 1.16667 NA Intergenic L1MC3|LINE|L1 -349013 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 154-31 chr17 48730606 48730781 + 1.16667 NA Intergenic Intergenic -1944 NM_006361 10481 Hs.66731 NM_006361 ENSG00000159184 HOXB13 HPC9|PSGD homeobox B13 protein-coding 159.167-14 chr12 42447267 42447425 + 1.16667 NA 3' UTR (NM_001364831, exon 12 of 12) 3' UTR (NM_001364831, exon 12 of 12) 36269 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 250.834-2 chr16 12362504 12362919 + 1.16667 NA intron (NM_032167, intron 16 of 20) L2b|LINE|L2 -357610 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 204.334-7 chr8 122925450 122925760 + 1.16667 NA intron (NM_001362797, intron 3 of 4) L2b|LINE|L2 100167 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 296.833-2 chr19 30544688 30545164 + 1.16667 NA intron (NM_014717, intron 3 of 4) intron (NM_014717, intron 3 of 4) 172542 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 191.5-26 chr2 159869313 159869586 + 1.16667 NA intron (NM_002349, intron 13 of 34) LTR82A|LTR|ERVL 35307 NM_001198760 100526664 Hs.153563 NM_001198759 ENSG00000248672 LY75-CD302 CD205|CLEC13B|DEC-205|LY75|Ly-75|gp200-MR6 LY75-CD302 readthrough protein-coding 264.334-4 chr4 32478770 32479044 + 1.16667 NA Intergenic Intergenic 127869 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 115-67 chr5 144608877 144609005 + 1.16667 NA Intergenic MIRb|SINE|MIR 403550 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 267.167-12 chr2 69731472 69731791 + 1.16667 NA intron (NM_001320698, intron 3 of 14) intron (NM_001320698, intron 3 of 14) -10503 NM_001153 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 175.5-20 chr2 35525325 35525899 + 1.16667 NA Intergenic L1MA3|LINE|L1 54207 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 161.833-14 chr16 30494734 30495059 + 1.16667 NA intron (NM_002209, intron 13 of 30) intron (NM_002209, intron 13 of 30) -9023 NR_039743 100616405 NR_039743 ENSG00000266305 MIR4518 mir-4518 microRNA 4518 ncRNA 229.667-6 chr11 36049966 36050180 + 1.16667 NA intron (NM_174902, intron 2 of 5) intron (NM_174902, intron 2 of 5) 27828 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 164.167-6 chr10 49765335 49765691 + 1.16667 NA Intergenic AluSz|SINE|Alu -3134 NM_001347823 55753 Hs.17860 NM_018245 ENSG00000197444 OGDHL - oxoglutarate dehydrogenase like protein-coding 336.167-6 chr6 90362099 90362775 + 1.16667 NA Intergenic Intergenic 49695 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 194-28 chr18 67165615 67165798 + 1.16667 NA Intergenic Intergenic 84122 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 351.167-7 chr15 38940200 38940669 + 1.16667 NA Intergenic Intergenic 243836 NR_160786 196.5-6 chr10 105346389 105346738 + 1.16667 NA Intergenic Intergenic 473770 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 225.667-29 chr6 98617348 98617558 + 1.16667 NA Intergenic THE1B-int|LTR|ERVL-MaLR 214247 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 188.334-4 chr13 75561587 75561832 + 1.16667 NA intron (NM_006002, intron 3 of 8) intron (NM_006002, intron 3 of 8) 11959 NM_006002 7347 Hs.162241 NM_006002 ENSG00000118939 UCHL3 UCH-L3 ubiquitin C-terminal hydrolase L3 protein-coding 236.667-33 chr5 30880434 30880945 + 1.16667 NA Intergenic Intergenic -312997 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 209.334-7 chr9 74099751 74100021 + 1.16667 NA Intergenic Intergenic -271645 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 170.333-16 chr11 82567717 82567976 + 1.16667 NA Intergenic MIRb|SINE|MIR -163933 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 206-31 chr6 48321501 48321764 + 1.16667 NA Intergenic Intergenic -252943 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 275.667-23 chr7 54476777 54477144 + 1.16667 NA Intergenic L1PA16|LINE|L1 -65365 NM_001301009 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 125.167-31 chr18 13552722 13552949 + 1.16667 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -58279 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 176.667-71 chr7 104362586 104362809 + 1.16667 NA intron (NM_199000, intron 1 of 2) LTR8|LTR|ERV1 34041 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 171.167-9 chr10 52247308 52247466 + 1.16667 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 66741 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 179.167-15 chr12 110206092 110206436 + 1.16667 NA intron (NR_144950, intron 17 of 18) intron (NR_144950, intron 17 of 18) -74983 NM_001681 488 Hs.506759 NM_001681 ENSG00000174437 ATP2A2 ATP2B|DAR|DD|SERCA2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 protein-coding 267.667-12 chr2 157670238 157670833 + 1.16667 NA Intergenic Intergenic -41671 NM_145259 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 133-79 chr6 56328740 56328897 + 1.16667 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 65310 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 240.5-17 chr5 106450351 106450654 + 1.16667 NA Intergenic Intergenic 560512 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 194.167-32 chr6 47858797 47859091 + 1.16667 NA Intergenic Intergenic 71876 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 288.667-10 chr8 119174035 119174508 + 1.16667 NA Intergenic L2c|LINE|L2 -34092 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 268.167-5 chr18 51064407 51064934 + 1.16667 NA intron (NM_005359, intron 8 of 11) intron (NM_005359, intron 8 of 11) 34457 NM_005359 4089 Hs.75862 NM_005359 ENSG00000141646 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding 215-30 chr5 76623998 76624254 + 1.16667 NA promoter-TSS (NM_001256566) promoter-TSS (NM_001256566) -723 NM_004101 2151 Hs.42502 NM_004101 ENSG00000164220 F2RL2 PAR-3|PAR3 coagulation factor II thrombin receptor like 2 protein-coding 321.333 chr11 96032943 96033433 + 1.16667 NA intron (NM_032427, intron 2 of 4) intron (NM_032427, intron 2 of 4) -108981 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 302-9 chr10 95461216 95461605 + 1.16667 NA intron (NM_001290295, intron 2 of 24) intron (NM_001290295, intron 2 of 24) -20230 NM_001034957 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 195-7 chr11 97902586 97902791 + 1.16667 NA Intergenic L2|LINE|L2 -1118261 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 388-2 chr2 237208349 237209140 + 1.16667 NA Intergenic Intergenic 122855 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 128.333-47 chr17 61022056 61022271 + 1.16667 NA intron (NM_001320470, intron 16 of 25) intron (NM_001320470, intron 16 of 25) 344312 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 155-76 chr8 118745670 118745889 + 1.16667 NA Intergenic MER97c|DNA|hAT-Tip100 -123816 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 316-5 chr3 127329096 127329560 + 1.16667 NA intron (NR_110147, intron 3 of 4) intron (NR_110147, intron 3 of 4) -41282 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 161.334-5 chr20 54405889 54406071 + 1.16667 NA Intergenic Intergenic -69613 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 360.667-3 chr6 67483007 67483333 + 1.16667 NA Intergenic Intergenic -572181 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 161.667-81 chr7 84787301 84787632 + 1.16667 NA Intergenic Intergenic 254990 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 182.334-6 chr4 82222951 82223155 + 1.16667 NA Intergenic Intergenic 150938 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 128.834 chr1 190069632 190069784 + 1.16667 NA Intergenic L1M2|LINE|L1 406302 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 228-27 chr5 77855778 77856110 + 1.16667 NA Intergenic L2|LINE|L2 -28712 NR_105012 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 195.501-2 chr6 55469492 55469672 + 1.16667 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 109632 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 216.5-35 chr9 9915517 9915765 + 1.16667 NA intron (NM_002839, intron 5 of 45) L1M2c|LINE|L1 116249 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 151.167-44 chr5 150408761 150409057 + 1.16667 NA intron (NR_157074, intron 1 of 6) MLT1A1|LTR|ERVL-MaLR 3847 NM_001364084 972 Hs.436568 NM_004355 ENSG00000019582 CD74 DHLAG|HLADG|II|Ia-GAMMA|p33 CD74 molecule protein-coding 202.167-22 chr20 49425686 49425927 + 1.16667 NA intron (NM_004975, intron 1 of 1) intron (NM_004975, intron 1 of 1) 56862 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 266.667 chr1 169630565 169630943 + 1.16667 NA promoter-TSS (NM_003005) promoter-TSS (NM_003005) -630 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 211.667-7 chr10 110292360 110292636 + 1.16667 NA 3' UTR (NM_005871, exon 6 of 6) 3' UTR (NM_005871, exon 6 of 6) 12422 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 251-30 chr8 90885273 90885604 + 1.16667 NA intron (NM_022351, intron 5 of 12) intron (NM_022351, intron 5 of 12) 93663 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 167-43 chr5 16232952 16233207 + 1.16667 NA Intergenic Intergenic 52838 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 165.833-37 chr2 238952907 238953078 + 1.16667 NA Intergenic L1ME1|LINE|L1 -26723 NR_034162 401039 Hs.516791 NM_001001698 ENSG00000227744 LINC01940 - long intergenic non-protein coding RNA 1940 ncRNA 242.667-19 chr4 37190581 37190914 + 1.16667 NA Intergenic MER44C|DNA|TcMar-Tigger 51244 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 275.333-7 chr11 91274614 91274888 + 1.16667 NA Intergenic Intergenic -405549 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 141.5-44 chr2 36868002 36868206 + 1.16667 NA intron (NM_003162, intron 11 of 17) intron (NM_003162, intron 11 of 17) 98432 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 243.834 chr1 61451757 61452060 + 1.16667 NA intron (NM_001134673, intron 10 of 10) intron (NM_001134673, intron 10 of 10) -198390 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 214.667-7 chr11 8112749 8113070 + 1.16667 NA intron (NM_001135109, intron 1 of 1) L1ME4a|LINE|L1 31547 NM_177972 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 180.667-59 chr5 120323218 120323413 + 1.16667 NA Intergenic Intergenic -140963 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 343.334-2 chr3 133072676 133073206 + 1.16667 NA intron (NM_001136469, intron 2 of 5) L1MB7|LINE|L1 34653 NM_023943 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 214-38 chr5 133479662 133479941 + 1.16667 NA intron (NM_015082, intron 3 of 15) L1MB8|LINE|L1 -52095 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 188-19 chr12 104751364 104751582 + 1.16667 NA intron (NM_018413, intron 2 of 2) intron (NM_018413, intron 2 of 2) 159840 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 159-62 chr6 53191572 53191760 + 1.16667 NA Intergenic L1ME4b|LINE|L1 -42825 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 247.167-8 chr17 60521276 60521490 + 1.16667 NA intron (NM_006380, intron 1 of 12) Tigger3c|DNA|TcMar-Tigger 4857 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 175.334-11 chr5 117408561 117409119 + 1.16667 NA Intergenic L1PA13|LINE|L1 -6672 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 236.5-37 chrX 153208767 153209239 + 1.16667 NA Intergenic Intergenic 29719 NM_004988 4100 Hs.72879 NM_004988 ENSG00000198681 MAGEA1 CT1.1|MAGE1 MAGE family member A1 protein-coding 123.334-5 chr18 3539630 3539877 + 1.16667 NA intron (NM_001242762, intron 6 of 9) intron (NM_001242762, intron 6 of 9) -54361 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 190.667-61 chr9 1580183 1580636 + 1.16667 NA Intergenic MIRb|SINE|MIR -434938 NM_001289397 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 306.5-6 chr7 51801448 51801799 + 1.16667 NA Intergenic Tigger2a|DNA|TcMar-Tigger -408367 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 256-12 chr4 83440809 83441432 + 1.16667 NA intron (NM_001297757, intron 6 of 16) MER119|DNA|hAT-Charlie 14703 NM_133636 113510 Hs.480101 NM_133636 ENSG00000163312 HELQ HEL308 helicase, POLQ like protein-coding 231-5 chr11 40077680 40077988 + 1.16667 NA Intergenic L1M4|LINE|L1 215296 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 276.167-14 chr8 127282689 127283003 + 1.16667 NA intron (NR_117099, intron 1 of 3) intron (NR_117099, intron 1 of 3) 38209 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 156.334-3 chr5 5525814 5526007 + 1.16667 NA Intergenic THE1C|LTR|ERVL-MaLR 103233 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 114.5-8 chr1 218076143 218076291 + 1.16667 NA Intergenic AluSq2|SINE|Alu 32712 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 243.834-7 chr8 21605223 21605503 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 183512 NM_001165038 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 283.5-9 chr4 35944629 35945031 + 1.16667 NA Intergenic Intergenic 299109 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 227.834-7 chr6 133639693 133639919 + 1.16667 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -181341 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 312.167-4 chr22 24074650 24075249 + 1.16667 NA intron (NM_012295, intron 18 of 36) AluJr4|SINE|Alu 63579 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 161-36 chr21 27181073 27181300 + 1.16667 NA Intergenic Intergenic -214098 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 144-29 chr18 70574476 70574656 + 1.16667 NA Intergenic Intergenic 76388 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 201.667-13 chr14 67260909 67261218 + 1.16667 NA intron (NM_001256550, intron 1 of 14) MIRb|SINE|MIR 19628 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 268-20 chr7 44940294 44940741 + 1.16667 NA Intergenic L1MC2|LINE|L1 38498 NM_033054 64005 Hs.37617 NM_033054 ENSG00000136286 MYO1G HA2|HLA-HA2|MHAG myosin IG protein-coding 286.334-3 chr12 89903426 89903763 + 1.16667 NA Intergenic MER33|DNA|hAT-Charlie -44099 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 225.167-25 chr4 172362064 172362302 + 1.16667 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 326734 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 258.167-3 chr13 93774909 93775135 + 1.16667 NA intron (NM_005708, intron 2 of 8) L2b|LINE|L2 83451 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 198.667-42 chr4 125237104 125237565 + 1.16667 NA Intergenic Intergenic -79078 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 123.334-3 chr1 116661358 116661575 + 1.16667 NA intron (NM_001007237, intron 2 of 10) intron (NM_001007237, intron 2 of 10) 6267 NM_001007237 3321 Hs.171057 NM_001542 ENSG00000143061 IGSF3 EWI-3|LCDD|V8 immunoglobulin superfamily member 3 protein-coding 204 chr1 12132879 12133122 + 1.16667 NA intron (NM_001243, intron 12 of 14) MIRb|SINE|MIR -33943 NR_107000 102465836 NR_107000 ENSG00000283789 MIR7846 hsa-mir-7846 microRNA 7846 ncRNA 185.667-63 chrX 69403729 69403962 + 1.16667 NA Intergenic MamGyp-int|LTR|Gypsy -101390 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 213.167-13 chr2 57803228 57803458 + 1.16667 NA Intergenic Intergenic -104308 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 397.167-6 chr9 104688245 104688806 + 1.16667 NA Intergenic Intergenic -5897 NM_001004484 286365 Hs.553683 NM_001004484 ENSG00000179055 OR13D1 OR9-15 olfactory receptor family 13 subfamily D member 1 protein-coding 230.667-6 chr12 95299775 95300073 + 1.16667 NA non-coding (NR_147923, exon 12 of 12) non-coding (NR_147923, exon 12 of 12) -8496 NR_029895 442903 NR_029895 ENSG00000199172 MIR331 MIRN331|hsa-mir-331|mir-331 microRNA 331 ncRNA 218.667-18 chr2 35635373 35635688 + 1.16667 NA Intergenic Intergenic 164125 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 185.334-6 chr8 133931493 133931765 + 1.16667 NA Intergenic L1ME3|LINE|L1 45133 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 249.667-22 chr2 126296614 126296940 + 1.16667 NA Intergenic L1MC3|LINE|L1 -178792 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 228.833-18 chr7 17868790 17869248 + 1.16667 NA intron (NM_001350862, intron 8 of 25) intron (NM_001350862, intron 8 of 25) 71475 NM_001350866 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 224-35 chr7 15566656 15566931 + 1.16667 NA Intergenic THE1B|LTR|ERVL-MaLR -4778 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 284.667-6 chr14 40996376 40996751 + 1.16667 NA intron (NR_109758, intron 3 of 3) L1ME1|LINE|L1 41852 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 147.333-21 chr13 112660978 112661193 + 1.16667 NA intron (NM_207440, intron 1 of 2) L1MA6|LINE|L1 14041 NM_207440 400165 Hs.591213 NM_207440 ATP11AUN C13orf35|SMABLO1 ATP11A upstream neighbor protein-coding 221-29 chr7 7363756 7364160 + 1.16667 NA intron (NM_001037763, intron 33 of 34) intron (NM_001037763, intron 33 of 34) 108804 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 178.333-2 chr1 117062982 117063239 + 1.16667 NA intron (NM_003594, intron 3 of 22) intron (NM_003594, intron 3 of 22) 2784 NM_003594 8458 Hs.32333 NM_003594 ENSG00000116830 TTF2 HuF2|ZGRF6 transcription termination factor 2 protein-coding 225.334-7 chr9 2473725 2474075 + 1.16667 NA Intergenic L2c|LINE|L2 -147887 NM_001322225 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 224-16 chr15 88533934 88534157 + 1.16667 NA intron (NM_001144074, intron 1 of 4) L1MB3|LINE|L1 12330 NM_001321596 55070 Hs.655064 NM_017996 ENSG00000140543 DET1 - DET1 partner of COP1 E3 ubiquitin ligase protein-coding 314.333 chr1 215982219 215982690 + 1.16667 NA intron (NM_206933, intron 35 of 71) intron (NM_206933, intron 35 of 71) -90011 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 447.166-2 chr8 132712820 132713585 + 1.16667 NA intron (NM_144649, intron 9 of 9) intron (NM_144649, intron 9 of 9) -37657 NR_135908 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 302.667 chr1 20942883 20943192 + 1.16667 NA intron (NM_003760, intron 8 of 31) AluJr|SINE|Alu 45395 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 179.834-12 chr8 54283286 54283535 + 1.16667 NA Intergenic L5|LINE|RTE-X -47276 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 174.167 chr1 25674009 25674339 + 1.16667 NA intron (NM_020379, intron 1 of 11) intron (NM_020379, intron 1 of 11) 56706 NM_020379 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 246.5-9 chr16 47819595 47820087 + 1.16667 NA Intergenic L1ME4c|LINE|L1 -38740 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 249.167 chr1 147630935 147631269 + 1.16667 NA Intergenic Intergenic 39422 NR_136633 51205 Hs.562154 NM_016361 ENSG00000162836 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 225.333-29 chr7 95112391 95112642 + 1.16667 NA intron (NM_017650, intron 3 of 15) L1PB4|LINE|L1 202618 NM_001166162 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 126.167-72 chr5 57738053 57738250 + 1.16667 NA Intergenic Intergenic 87491 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 291.334-9 chr8 100748567 100748867 + 1.16667 NA Intergenic AluJr|SINE|Alu -26629 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 150.667-74 chr5 19627032 19627167 + 1.16667 NA intron (NM_001349562, intron 5 of 13) MER63C|DNA|hAT-Blackjack 259173 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 247.833-10 chr5 146133005 146133471 + 1.16667 NA intron (NM_016460, intron 21 of 30) intron (NM_016460, intron 21 of 30) -27661 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 254-27 chr7 11524566 11524827 + 1.16667 NA intron (NM_015204, intron 6 of 26) intron (NM_015204, intron 6 of 26) 307502 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 325.001 chr10 131998866 131999173 + 1.16667 NA Intergenic MIR|SINE|MIR -17006 NM_004052 664 Hs.144873 NM_004052 ENSG00000176171 BNIP3 NIP3 BCL2 interacting protein 3 protein-coding 198.167-5 chr13 44702202 44702385 + 1.16667 NA Intergenic Intergenic 61924 NR_149082 106144541 Hs.578031 NR_149082 LINC00407 - long intergenic non-protein coding RNA 407 ncRNA 378.833-4 chr2 38573178 38573637 + 1.16667 NA exon (NM_001142650, exon 9 of 14) exon (NM_001142650, exon 9 of 14) 29521 NM_138394 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 132.334-5 chr2 155378208 155378394 + 1.16667 NA Intergenic Intergenic 679606 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 328.001 chr12 2050584 2050972 + 1.16667 NA Intergenic MamTip2|DNA|hAT-Tip100 -2209 NM_001167623 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 251.834-4 chr3 69615897 69616190 + 1.16667 NA Intergenic L1MA5|LINE|L1 -123421 NM_001354605 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 285.001 chr17 57906077 57906395 + 1.16667 NA intron (NM_001271875, intron 1 of 10) L1MB4|LINE|L1 -2847 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 246.833-7 chr19 32002460 32002990 + 1.16667 NA Intergenic MLT1E1|LTR|ERVL-MaLR -23137 NR_110674 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 292.501-3 chr19 47613124 47613458 + 1.16667 NA intron (NM_015711, intron 1 of 14) intron (NM_015711, intron 1 of 14) 5095 NM_015711 29998 Hs.97244 NM_015711 ENSG00000063169 BICRA GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein protein-coding 260.167-8 chr14 52981590 52981912 + 1.16667 NA Intergenic L1MC1|LINE|L1 -30654 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 118.833-65 chr6 104116548 104116746 + 1.16667 NA Intergenic Intergenic 742899 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 412 chr14 62962675 62963248 + 1.16667 NA intron (NM_139318, intron 6 of 10) Tigger7|DNA|TcMar-Tigger 82497 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 298-8 chr4 73530141 73530476 + 1.16667 NA Intergenic Intergenic 21505 NR_046377 728040 Hs.640574 NR_046377 ENSG00000250436 LINC02499 - long intergenic non-protein coding RNA 2499 ncRNA 337.334-5 chr7 127514898 127515310 + 1.16667 NA Intergenic Intergenic 38221 NR_110024 100506682 Hs.148450 NR_110024 ENSG00000226770 LOC100506682 - uncharacterized LOC100506682 ncRNA 179.834-8 chr18 60960974 60961182 + 1.16667 NA Intergenic Intergenic -372352 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 331.834 chr22 26819401 26819813 + 1.16667 NA Intergenic MIRb|SINE|MIR -40604 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 134.167-15 chr11 35720383 35720725 + 1.16667 NA intron (NM_017583, intron 2 of 4) L1MC1|LINE|L1 57779 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 241.834-9 chr4 136693241 136693618 + 1.16667 NA Intergenic Intergenic -500327 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 206.501 chr12 105798656 105799042 + 1.16667 NA Intergenic Intergenic 92075 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 139.5-28 chr2 81499931 81500093 + 1.16667 NA Intergenic Intergenic -33066 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 248.5 chr10 9872775 9873200 + 1.16667 NA Intergenic L1MEg|LINE|L1 -185735 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 324.833 chr11 83465959 83466329 + 1.16667 NA intron (NM_001142699, intron 26 of 27) intron (NM_001142699, intron 26 of 27) -179737 NM_001286119 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 163-35 chr20 10847972 10848215 + 1.16667 NA Intergenic Intergenic 61179 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 264.667-15 chr2 77056401 77056696 + 1.16667 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 70583 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 211-2 chr1 80864958 80865304 + 1.16667 NA Intergenic Intergenic 223844 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 277.834 chr1 68668276 68668606 + 1.16667 NA Intergenic Intergenic -171359 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 155.667-21 chr11 22414048 22414221 + 1.16667 NA Intergenic L1MA8|LINE|L1 75753 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 197.001 chr14 52726364 52726669 + 1.16667 NA intron (NR_158967, intron 14 of 14) intron (NR_158967, intron 14 of 14) -3650 NM_145251 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 272.833 chr1 24534251 24534700 + 1.16667 NA intron (NM_013441, intron 4 of 4) AluY|SINE|Alu 20161 NM_001251985 11123 Hs.656799 NM_013441 ENSG00000117602 RCAN3 DSCR1L2|MCIP3|RCN3|hRCN3 RCAN family member 3 protein-coding 229.834 chr1 97072928 97073311 + 1.16667 NA Intergenic MIRb|SINE|MIR -22804 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 298.833 chr13 71897408 71897912 + 1.16667 NA Intergenic L1MA4A|LINE|L1 -30456 NM_001366712 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 335.501-2 chr5 107799020 107799398 + 1.16667 NA Intergenic AluJr|SINE|Alu -128272 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 185.834-3 chr17 31501468 31501633 + 1.16667 NA intron (NM_001346748, intron 1 of 12) AluYc|SINE|Alu 13442 NM_001346749 84440 Hs.406788 NM_032932 ENSG00000131242 RAB11FIP4 FIP4-Rab11|RAB11-FIP4 RAB11 family interacting protein 4 protein-coding 188.5-33 chr2 143607752 143608054 + 1.16667 NA intron (NM_018460, intron 11 of 13) intron (NM_018460, intron 11 of 13) -329164 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 284.001 chr13 78743487 78743795 + 1.16667 NA Intergenic Intergenic -84486 NM_024546 79596 Hs.567576 NM_024546 ENSG00000152193 OBI1 C13orf7|RNF219 ORC ubiquitin ligase 1 protein-coding 273.667-4 chr12 13624114 13624637 + 1.16667 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -247630 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 192-53 chr8 117603710 117603964 + 1.16667 NA Intergenic MIRc|SINE|MIR 83124 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 234.5-15 chr2 189655103 189655331 + 1.16667 NA Intergenic Intergenic -6182 NM_001353493 110599588 Hs.101364 NM_001353493 ENSG00000286053 ASDURF ASNSD1|ASNSD1-SEP|NS3TP1 ASNSD1 upstream reading frame protein-coding 381.667-4 chr2 13463925 13464589 + 1.16667 NA Intergenic L1MC3|LINE|L1 -457244 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 257.833-7 chr22 45700199 45700481 + 1.16667 NA exon (NM_001167621, exon 3 of 11) exon (NM_001167621, exon 3 of 11) 28506 NM_013236 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 405.833 chr2 187129849 187130436 + 1.16667 NA Intergenic Intergenic -280972 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 236.167-5 chr12 95430347 95430606 + 1.16667 NA Intergenic AluSx|SINE|Alu -43676 NM_006838 10988 Hs.444986 NM_006838 ENSG00000111142 METAP2 MAP2|MNPEP|p67eIF2 methionyl aminopeptidase 2 protein-coding 229.667-36 chr9 79678250 79678631 + 1.16667 NA intron (NR_104239, intron 9 of 20) intron (NR_104239, intron 9 of 20) 105263 NM_001351546 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 166.167-3 chr1 151619584 151619810 + 1.16667 NA intron (NM_030918, intron 1 of 11) MER112|DNA|hAT-Charlie 7647 NM_030918 81609 Hs.192326 NM_030918 ENSG00000143376 SNX27 MRT1|MY014 sorting nexin 27 protein-coding 187-35 chr5 87339937 87340169 + 1.16667 NA intron (NM_022650, intron 5 of 24) L2a|LINE|L2 -16425 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 244-11 chr2 207234748 207234983 + 1.16667 NA intron (NR_110283, intron 3 of 3) intron (NR_110283, intron 3 of 3) -4946 NR_146555 105373853 Hs.678559 NR_146555 ENSG00000229647 MYOSLID - myocardin-induced smooth muscle lncRNA, inducer of differentiation ncRNA 292.334-2 chr12 121716940 121717446 + 1.16667 NA intron (NM_001080825, intron 1 of 11) intron (NM_001080825, intron 1 of 11) 4441 NM_001080825 144404 Hs.644504 NM_001080825 ENSG00000188735 TMEM120B - transmembrane protein 120B protein-coding 266.167-12 chr20 9977037 9977286 + 1.16667 NA Intergenic Tigger2|DNA|TcMar-Tigger -9172 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 250-11 chr2 67526240 67526568 + 1.16667 NA Intergenic Intergenic 129071 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 183.5-8 chr11 39712748 39713127 + 1.16667 NA Intergenic Tigger7|DNA|TcMar-Tigger 580193 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 147.834 chr21 32314526 32314730 + 1.16667 NA exon (NM_206898, exon 5 of 5) exon (NM_206898, exon 5 of 5) 22815 NM_206898 56246 Hs.584940 NM_178817 ENSG00000170262 MRAP B27|C21orf61|FALP|FGD2|GCCD2 melanocortin 2 receptor accessory protein protein-coding 275.834-5 chr9 17820550 17820858 + 1.16667 NA Intergenic L1MDa|LINE|L1 241638 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 210.5-49 chr8 81230198 81230521 + 1.16667 NA Intergenic MLT1C|LTR|ERVL-MaLR -50177 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 133-100 chr9 21365839 21366056 + 1.16667 NA Intergenic (TTCTCTT)n|Simple_repeat|Simple_repeat 2129 NM_006900 3447 Hs.37026 NM_006900 ENSG00000233816 IFNA13 - interferon alpha 13 protein-coding 352.001 chr15 51375152 51375507 + 1.16667 NA intron (NM_181789, intron 1 of 9) intron (NM_181789, intron 1 of 9) -1917 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 247-18 chr8 114175577 114175987 + 1.16667 NA Intergenic Intergenic -738843 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 403.5-2 chr2 50639771 50640391 + 1.16667 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 56181 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 204.501 chr11 79764271 79764457 + 1.16667 NA Intergenic (AGAC)n|Simple_repeat|Simple_repeat -323334 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 271-18 chrX 66202289 66202772 + 1.16667 NA intron (NM_001367233, intron 12 of 20) intron (NM_001367233, intron 12 of 20) 34780 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 132.167-47 chr3 88131752 88131896 + 1.16667 NA intron (NM_001350135, intron 4 of 6) intron (NM_001350135, intron 4 of 6) 18042 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 240.834-6 chr6 63553952 63554326 + 1.16667 NA Intergenic Intergenic -17873 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 329.5 chr1 48469497 48470008 + 1.16667 NA intron (NM_019073, intron 1 of 12) intron (NM_019073, intron 1 of 12) 2452 NM_019073 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 207.167-21 chr3 104411467 104411727 + 1.16667 NA Intergenic Intergenic -887481 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 231.333-36 chr9 35296679 35297041 + 1.16667 NA intron (NM_006377, intron 8 of 38) L1MC4|LINE|L1 -45036 NM_001371188 144.834-3 chr2 148262322 148262521 + 1.16667 NA intron (NM_018328, intron 4 of 14) MIR|SINE|MIR -240817 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 134.667-66 chr3 115045507 115045698 + 1.16667 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) 25812 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 295.834-2 chr2 200554185 200554789 + 1.16667 NA intron (NM_001160046, intron 5 of 8) MER41-int|LTR|ERV1 28280 NM_152524 151246 Hs.655182 NM_152524 ENSG00000163535 SGO2 SGOL2|TRIPIN shugoshin 2 protein-coding 147.5-63 chr4 43138312 43138569 + 1.16667 NA Intergenic L1MA5|LINE|L1 245174 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 183.667-54 chr4 53449691 53450001 + 1.16667 NA intron (NM_001134938, intron 12 of 14) L1MEd|LINE|L1 -50231 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 147.834-3 chr4 152569026 152569163 + 1.16667 NA Intergenic LTR90B|LTR|LTR 32666 NR_039658 100616193 NR_039658 ENSG00000283792 MIR4453 - microRNA 4453 ncRNA 138.5-11 chr10 20714561 20714763 + 1.16667 NA Intergenic Intergenic 162692 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 204-9 chr15 59608059 59608244 + 1.16667 NA Intergenic Intergenic -3632 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 227.833-2 chr11 77198300 77198618 + 1.16667 NA intron (NM_001127180, intron 33 of 48) intron (NM_001127180, intron 33 of 48) 70213 NM_001127180 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 168.834-2 chr15 83186268 83186451 + 1.16667 NA intron (NM_016073, intron 1 of 5) Charlie21a|DNA|hAT-Charlie 21464 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 330.667-10 chr5 35111455 35111806 + 1.16667 NA intron (NR_037910, intron 1 of 7) L1ME4a|LINE|L1 6492 NM_001204318 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 123.334 chr1 29425437 29425822 + 1.16667 NA Intergenic Intergenic -75515 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 123.167-10 chr10 43018644 43018836 + 1.16667 NA Intergenic L1M4|LINE|L1 21177 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 360.5 chr10 30430187 30430735 + 1.16667 NA Intergenic Intergenic -3560 NM_001244134 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 283.667-9 chr14 68213318 68213907 + 1.16667 NA intron (NM_133509, intron 7 of 10) L3|LINE|CR1 390020 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 288.167-4 chr14 72378316 72378773 + 1.16667 NA intron (NM_001370288, intron 3 of 16) L1MA5A|LINE|L1 -138276 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 151.167-43 chr5 132899271 132899457 + 1.16667 NA intron (NM_014423, intron 8 of 20) intron (NM_014423, intron 8 of 20) 25696 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 318.834 chr11 22748064 22748389 + 1.16667 NA intron (NM_005256, intron 4 of 6) MIR3|SINE|MIR 73452 NM_005256 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 GAS-2 growth arrest specific 2 protein-coding 241.167-8 chr22 40248884 40249109 + 1.16667 NA intron (NM_015088, intron 2 of 20) intron (NM_015088, intron 2 of 20) 71071 NM_001162501 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 222.167-22 chr2 68192549 68192857 + 1.16667 NA intron (NM_000945, intron 2 of 5) intron (NM_000945, intron 2 of 5) 34815 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 237.167-20 chr6 48194374 48194679 + 1.16667 NA Intergenic Intergenic -125837 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 209.501-2 chr2 168599704 168599896 + 1.16667 NA intron (NM_001256126, intron 3 of 10) intron (NM_001256126, intron 3 of 10) 16857 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 199.667-61 chr7 70195748 70195970 + 1.16667 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 597384 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 124.167-19 chr13 32410907 32411013 + 1.16667 NA intron (NM_001353636, intron 1 of 2) intron (NM_001353636, intron 1 of 2) 17170 NM_001353627 90634 Hs.732118 NM_052818 ENSG00000139597 N4BP2L1 CG018 NEDD4 binding protein 2 like 1 protein-coding 206.5-35 chr7 80650405 80650644 + 1.16667 NA intron (NM_001371079, intron 3 of 13) intron (NM_001371079, intron 3 of 13) 3871 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 140-74 chr7 3738731 3739018 + 1.16667 NA intron (NM_152744, intron 4 of 44) L1MA9|LINE|L1 -390811 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 288.834-4 chr5 37645237 37645626 + 1.16667 NA intron (NM_001345998, intron 10 of 17) L1MA3|LINE|L1 189391 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 321-7 chr21 30149194 30149629 + 1.16667 NA Intergenic Intergenic 17394 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 235.001 chr8 128462220 128462459 + 1.16667 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 102340 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 187-44 chr8 81868873 81869177 + 1.16667 NA Intergenic L1PA16|LINE|L1 -26739 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 125.667-7 chr1 164965972 164966079 + 1.16667 NA Intergenic AluSg|SINE|Alu -191384 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 230.5-16 chr5 72466434 72466714 + 1.16667 NA intron (NM_152625, intron 1 of 4) L2b|LINE|L2 40836 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 226.5-17 chr2 41786398 41786667 + 1.16667 NA Intergenic MIRc|SINE|MIR -91023 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 242.334-3 chr4 94805644 94805871 + 1.16667 NA intron (NM_001203, intron 1 of 12) intron (NM_001203, intron 1 of 12) 47802 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 163-19 chr15 49511691 49511852 + 1.16667 NA intron (NM_001330293, intron 9 of 10) L1PA11|LINE|L1 88529 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 177.5-43 chr2 160314925 160315142 + 1.16667 NA intron (NM_002897, intron 3 of 13) intron (NM_002897, intron 3 of 13) -43138 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000285373 LINC02478 - long intergenic non-protein coding RNA 2478 ncRNA 270.167-15 chr7 86845070 86845407 + 1.16667 NA intron (NM_000840, intron 4 of 5) LTR40b|LTR|ERVL 120661 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 171.5-41 chr20 35364524 35364800 + 1.16667 NA intron (NM_001184977, intron 4 of 7) intron (NM_001184977, intron 4 of 7) 47311 NM_018244 55245 Hs.726290 NM_018244 ENSG00000101019 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 142.167-8 chr1 246217622 246217873 + 1.16667 NA intron (NM_022743, intron 5 of 11) L1ME3E|LINE|L1 199665 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 222.833-15 chr3 10796196 10796600 + 1.16667 NA Intergenic L1MA9|LINE|L1 -19830 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 146.333-43 chr18 49262936 49263154 + 1.16667 NA intron (NM_001353210, intron 11 of 16) intron (NM_001353210, intron 11 of 16) 197600 NM_017653 54808 Hs.162996 NM_017653 ENSG00000141627 DYM DMC|SMC dymeclin protein-coding 300.334-3 chr18 42270228 42270824 + 1.16667 NA intron (NR_046454, intron 3 of 6) intron (NR_046454, intron 3 of 6) 83858 NR_046174 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 182.167-37 chr8 65626497 65626742 + 1.16667 NA intron (NM_001286702, intron 2 of 5) intron (NM_001286702, intron 2 of 5) 7558 NM_018120 55156 Hs.269542 NM_018120 ENSG00000104442 ARMC1 Arcp armadillo repeat containing 1 protein-coding 182.833-59 chr8 140770808 140771091 + 1.16667 NA intron (NR_148036, intron 14 of 34) intron (NR_148036, intron 14 of 34) -38296 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 143.667-71 chr3 87104825 87104969 + 1.16667 NA intron (NR_104153, intron 1 of 2) intron (NR_104153, intron 1 of 2) 15617 NR_047469 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 132.333-28 chr12 32868878 32869342 + 1.16667 NA intron (NM_001005242, intron 3 of 12) intron (NM_001005242, intron 3 of 12) 27736 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 143.5-20 chr14 35591092 35591281 + 1.16667 NA intron (NM_014990, intron 36 of 40) intron (NM_014990, intron 36 of 40) 57022 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 222.667-9 chr14 73869680 73869917 + 1.16667 NA intron (NM_001371328, intron 3 of 8) AluSz|SINE|Alu -17061 NR_040251 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 116.334-2 chr15 61042298 61042397 + 1.16667 NA intron (NM_134261, intron 1 of 10) MER94|DNA|hAT-Blackjack 186955 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 125.5-42 chr2 174513699 174513853 + 1.16667 NA Intergenic L1MCa|LINE|L1 -26688 NM_001267051 151556 Hs.516604 NM_152529 ENSG00000163328 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 161.167-15 chr13 113910948 113911157 + 1.16667 NA intron (NM_001278674, intron 3 of 7) L1MDa|LINE|L1 15949 NM_001278674 643365 Hs.127655 NM_001039767 LINC00452 LINC00453 long intergenic non-protein coding RNA 452 protein-coding 221.167-5 chr10 91341198 91341660 + 1.16667 NA intron (NR_024467, intron 4 of 4) LTR39|LTR|ERV1 -67806 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 326-3 chr14 35929729 35930139 + 1.16667 NA Intergenic Intergenic 103596 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 340.501 chr11 113782987 113783435 + 1.16667 NA Intergenic Intergenic 3415 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 220.167-7 chr12 73012450 73012697 + 1.16667 NA Intergenic L1PB2|LINE|L1 -146617 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 189.834-8 chr3 143656364 143656554 + 1.16667 NA intron (NM_173653, intron 5 of 15) intron (NM_173653, intron 5 of 15) 192009 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 262-24 chr5 144067214 144067681 + 1.16667 NA Intergenic Intergenic 103212 NM_030799 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 165.167-40 chr5 9098994 9099301 + 1.16667 NA intron (NM_003966, intron 16 of 22) intron (NM_003966, intron 16 of 22) -45252 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 113.5-35 chr14 49476277 49476579 + 1.16667 NA Intergenic Intergenic 109952 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 160-10 chr10 31000499 31000703 + 1.16667 NA intron (NM_001143766, intron 1 of 7) L2c|LINE|L2 -1084 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 264.167 chr1 214267646 214267995 + 1.16667 NA Intergenic Intergenic -13339 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 145-50 chr2 197829565 197829800 + 1.16667 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 25089 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 229-16 chr16 75160691 75161016 + 1.16667 NA intron (NM_001318471, intron 3 of 4) MLT1A1|LTR|ERVL-MaLR 11802 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 228.667-10 chr12 75149012 75149357 + 1.16667 NA intron (NM_001260499, intron 2 of 3) intron (NM_001260499, intron 2 of 3) 60564 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 113.667-126 chr8 86177262 86177412 + 1.16667 NA Intergenic Intergenic 53044 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 314-10 chr5 155555378 155555908 + 1.16667 NA Intergenic L1M5|LINE|L1 541888 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 304.334-4 chr8 17818834 17819378 + 1.16667 NA Intergenic AluJb|SINE|Alu -17527 NM_001363061 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 193.834 chr1 43842131 43842642 + 1.16667 NA intron (NM_001270466, intron 4 of 4) MSTA|LTR|ERVL-MaLR 3764 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 353.334 chr12 19507137 19507662 + 1.16667 NA intron (NM_001114176, intron 5 of 8) intron (NM_001114176, intron 5 of 8) 66800 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 159.667-77 chr6 55166628 55166895 + 1.16667 NA intron (NM_001526, intron 1 of 7) L1MB7|LINE|L1 60301 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 114.333-3 chr1 43295909 43296113 + 1.16667 NA Intergenic Intergenic -4971 NM_005424 7075 Hs.78824 NM_005424 ENSG00000066056 TIE1 JTK14|TIE tyrosine kinase with immunoglobulin like and EGF like domains 1 protein-coding 206.834-8 chr2 99464788 99465111 + 1.16667 NA exon (NM_016316, exon 2 of 23) exon (NM_016316, exon 2 of 23) 25068 NM_016316 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 314.834-3 chr5 11080074 11080490 + 1.16667 NA intron (NM_001288715, intron 15 of 20) L1MA7|LINE|L1 -319048 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 172.667-34 chr18 3430143 3430417 + 1.16667 NA intron (NM_001278686, intron 2 of 3) Charlie1a|DNA|hAT-Charlie -17262 NM_173207 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 126.834-3 chr2 24068349 24068551 + 1.16667 NA exon (NM_016047, exon 3 of 4) exon (NM_016047, exon 3 of 4) 7876 NM_016047 51639 Hs.177861 NM_016047 ENSG00000115128 SF3B6 CGI-110|HSPC175|Ht006|P14|SAP14|SAP14a|SF3B14|SF3B14a splicing factor 3b subunit 6 protein-coding 166.833-26 chr2 190620286 190620501 + 1.16667 NA Intergenic Intergenic -28502 NM_001321313 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 202-2 chr10 17514587 17514854 + 1.16667 NA Intergenic Intergenic -60125 NR_144322 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 202-39 chr7 9886225 9886483 + 1.16667 NA Intergenic Intergenic 252084 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 186.833-20 chr18 71492792 71493185 + 1.16667 NA Intergenic Intergenic 85968 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 192.833-28 chr4 175668736 175669036 + 1.16667 NA intron (NM_001261447, intron 1 of 4) intron (NM_001261447, intron 1 of 4) 118790 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 222.501 chr6 92426545 92426769 + 1.16667 NA Intergenic Intergenic -736229 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 200.5-11 chr14 69431069 69431270 + 1.16667 NA intron (NM_001330185, intron 2 of 5) L1ME1|LINE|L1 32477 NM_001330185 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 275.167-17 chr8 100197175 100197465 + 1.16667 NA intron (NM_003114, intron 10 of 18) intron (NM_003114, intron 10 of 18) 38985 NM_003114 6674 Hs.591866 NM_003114 ENSG00000104450 SPAG1 CILD28|CT140|HEL-S-268|HSD-3.8|SP75|TPIS sperm associated antigen 1 protein-coding 190-24 chr2 11030757 11030958 + 1.16667 NA Intergenic L1ME3E|LINE|L1 101319 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 240.667-45 chr8 140421096 140421325 + 1.16667 NA intron (NM_001321646, intron 4 of 21) intron (NM_001321646, intron 4 of 21) 36534 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 194.167-30 chr5 167915654 167915995 + 1.16667 NA intron (NM_001368145, intron 2 of 26) intron (NM_001368145, intron 2 of 26) 160895 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 225.667-13 chr18 8872770 8873219 + 1.16667 NA Intergenic L1M4|LINE|L1 155613 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 160.167-21 chr16 82532900 82533054 + 1.16667 NA Intergenic L1ME1|LINE|L1 -93992 NM_001220488 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 264.167-15 chr3 66927962 66928402 + 1.16667 NA Intergenic L1M4|LINE|L1 -70125 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 124.334-6 chr5 22673279 22673790 + 1.16667 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 179810 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 204.333-10 chr11 13783658 13783948 + 1.16667 NA promoter-TSS (NR_149108) promoter-TSS (NR_149108) -583 NR_149108 105376562 Hs.577257 NR_149108 ENSG00000255411 LINC02548 - long intergenic non-protein coding RNA 2548 ncRNA 259-11 chr2 73758094 73758469 + 1.16667 NA Intergenic AluSz6|SINE|Alu -20875 NM_001330386 51002 Hs.157401 NM_016058 ENSG00000144034 TPRKB CGI-121|CGI121|GAMOS5 TP53RK binding protein protein-coding 158.167-7 chr12 118746100 118746291 + 1.16667 NA Intergenic Intergenic 15484 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 161-10 chr10 117693282 117693476 + 1.16667 NA Intergenic Intergenic -148311 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 191.167-14 chr2 88110402 88110684 + 1.16667 NA 3' UTR (NM_198274, exon 10 of 10) 3' UTR (NM_198274, exon 10 of 10) 17519 NM_001443 2168 Hs.380135 NM_001443 ENSG00000163586 FABP1 FABPL|L-FABP fatty acid binding protein 1 protein-coding 150.334-4 chr3 121246216 121246381 + 1.16667 NA intron (NM_001348343, intron 14 of 27) MER1B|DNA|hAT-Charlie 196658 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 229.167-10 chr12 54614065 54614284 + 1.16667 NA Intergenic Intergenic -3712 NR_003039 644076 Hs.483519 NR_003039 ENSG00000257780 GLYCAM1 - glycosylation dependent cell adhesion molecule 1 (pseudogene) pseudo 149.334-2 chr11 26481529 26481729 + 1.16667 NA intron (NM_001313727, intron 1 of 23) intron (NM_001313727, intron 1 of 23) 7727 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 252.167-17 chr8 40976598 40976904 + 1.16667 NA Intergenic Intergenic -78925 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 380.167-5 chr3 132718188 132718833 + 1.16667 NA intron (NR_037804, intron 3 of 44) MLT1J|LTR|ERVL-MaLR -3240 NR_002811 348808 Hs.586111 NR_002811 ENSG00000248724 NPHP3-AS1 NCRNA00119 NPHP3 antisense RNA 1 ncRNA 244.334-2 chr1 113797996 113798225 + 1.16667 NA intron (NR_130896, intron 1 of 7) intron (NR_130896, intron 1 of 7) 14366 NM_018364 54665 Hs.486285 NM_018364 ENSG00000081019 RSBN1 KDM9|ROSBIN round spermatid basic protein 1 protein-coding 268.667-2 chr12 5415547 5416038 + 1.16667 NA Intergenic L1ME3|LINE|L1 -16316 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 173.334 chr1 113026402 113026652 + 1.16667 NA intron (NR_103777, intron 2 of 2) intron (NR_103777, intron 2 of 2) 46575 NR_103777 100996251 Hs.382067 NR_103777 ENSG00000238198 LRIG2-DT - LRIG2 divergent transcript ncRNA 206.834-6 chr15 84708950 84709147 + 1.16667 NA intron (NM_014300, intron 1 of 5) intron (NM_014300, intron 1 of 5) 7091 NM_014300 23478 Hs.9534 NM_014300 ENSG00000140612 SEC11A 1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895 SEC11 homolog A, signal peptidase complex subunit protein-coding 139.667-89 chr8 71247524 71247705 + 1.16667 NA intron (NM_001370335, intron 14 of 20) intron (NM_001370335, intron 14 of 20) 109092 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 113.667-34 chr12 31482550 31482731 + 1.16667 NA intron (NM_144973, intron 2 of 20) FRAM|SINE|Alu -107283 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 282.167 chr1 32693946 32694409 + 1.16667 NA intron (NM_030786, intron 2 of 4) AluJb|SINE|Alu 8593 NM_030786 81493 Hs.712631 NM_030786 ENSG00000162520 SYNC SYNC1|SYNCOILIN syncoilin, intermediate filament protein protein-coding 203.334-4 chr3 6672485 6672685 + 1.16667 NA intron (NR_110123, intron 2 of 3) L1MC1|LINE|L1 132864 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 335.667-7 chr5 108734734 108735181 + 1.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR -6696 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 195.334-5 chr11 133103070 133103283 + 1.16667 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -159408 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 144.333-46 chr2 120090251 120090486 + 1.16667 NA non-coding (NR_138472, exon 12 of 18) non-coding (NR_138472, exon 12 of 18) 77291 NM_001330307 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 270.334-7 chr21 19700509 19700927 + 1.16667 NA Intergenic Intergenic 199037 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 181.834-3 chr2 157496240 157496492 + 1.16667 NA Intergenic L1MC4a|LINE|L1 -52277 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 180.334-10 chr8 90081574 90081738 + 1.16667 NA intron (NM_004929, intron 2 of 10) intron (NM_004929, intron 2 of 10) 1223 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 274.334-10 chr8 105054384 105054717 + 1.16667 NA Intergenic Intergenic -263888 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 224.834-6 chr7 97729323 97729566 + 1.16667 NA Intergenic MER2|DNA|TcMar-Tigger -2642 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 231.334-6 chr6 39655403 39655640 + 1.16667 NA intron (NM_001289020, intron 3 of 21) L1ME3G|LINE|L1 69887 NM_001289021 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 252.667-5 chr12 868762 869107 + 1.16667 NA exon (NM_213655, exon 10 of 28) exon (NM_213655, exon 10 of 28) 64142 NM_001297420 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 194.5-17 chr2 68985902 68986208 + 1.16667 NA Intergenic L1ME3E|LINE|L1 11482 NM_019617 56287 Hs.69319 NM_019617 ENSG00000169605 GKN1 AMP18|BRICD1|CA11|FOV|foveolin gastrokine 1 protein-coding 127.667-11 chr10 74194757 74194908 + 1.16667 NA intron (NM_001369124, intron 1 of 9) intron (NM_001369124, intron 1 of 9) 18069 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 335.667-8 chr5 156855766 156856592 + 1.16667 NA Intergenic Tigger17a|DNA|TcMar-Tigger 5884 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 234.834-9 chr4 168081289 168081704 + 1.16667 NA Intergenic Tigger2a|DNA|TcMar-Tigger -11041 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 223.167 chr1 80233011 80233366 + 1.16667 NA Intergenic AluSq2|SINE|Alu -302567 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 180.333-4 chr1 168398230 168398489 + 1.16667 NA Intergenic Intergenic 22835 NR_030284 693142 NR_030284 ENSG00000207974 MIR557 MIRN557|hsa-mir-557 microRNA 557 ncRNA 290.501 chr11 27730792 27731265 + 1.16667 NA Intergenic MIRb|SINE|MIR -8998 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 131.834-5 chr4 45191184 45191428 + 1.16667 NA Intergenic Intergenic -464672 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 174.834-5 chr3 128723227 128723397 + 1.16667 NA Intergenic MER6A|DNA|TcMar-Tigger -2824 NM_004637 7879 Hs.684374 NM_004637 ENSG00000075785 RAB7A PRO2706|RAB7 RAB7A, member RAS oncogene family protein-coding 349.833-8 chr7 98653428 98653950 + 1.16667 NA Intergenic Intergenic 36404 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 125.667-75 chr22 47022914 47023045 + 1.16667 NA intron (NM_001284305, intron 10 of 12) L1MEc|LINE|L1 -106937 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 160.5 chr1 36291519 36291665 + 1.16667 NA intron (NM_001321471, intron 7 of 12) intron (NM_001321471, intron 7 of 12) -14776 NM_001162530 79729 Hs.524496 NM_024676 ENSG00000214193 SH3D21 C1orf113 SH3 domain containing 21 protein-coding 196.334-6 chr12 40305436 40305969 + 1.16667 NA intron (NM_198578, intron 27 of 50) intron (NM_198578, intron 27 of 50) 80705 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 123.167-33 chr16 52951275 52951459 + 1.16667 NA Intergenic Intergenic 101506 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 229-21 chr2 97738753 97739061 + 1.16667 NA intron (NM_207519, intron 5 of 5) intron (NM_207519, intron 5 of 5) 4501 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 316.501 chr20 20776690 20777013 + 1.16667 NA Intergenic Intergenic -64207 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 297.501-4 chr7 121613158 121613524 + 1.16667 NA Intergenic Intergenic -216973 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 120.334-3 chr4 36704152 36704269 + 1.16667 NA Intergenic Intergenic -62310 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 216.667-26 chr20 35593077 35593320 + 1.16667 NA intron (NR_119376, intron 21 of 42) L1MCc|LINE|L1 14364 NR_119376 80307 Hs.72222 NR_001442 ENSG00000088340 FER1L4 C20orf124 fer-1 like family member 4 (pseudogene) pseudo 315.834-5 chr4 73341263 73341908 + 1.16667 NA Intergenic Intergenic -62702 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 253.834-4 chr16 59254828 59255053 + 1.16667 NA Intergenic MLT1I|LTR|ERVL-MaLR 500251 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 129.667-87 chr5 153567650 153567895 + 1.16667 NA intron (NM_001258020, intron 3 of 16) L2a|LINE|L2 75600 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 447.834-3 chr7 24612057 24612647 + 1.16667 NA intron (NM_001303037, intron 1 of 11) L1M5|LINE|L1 38900 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 165.833-26 chr17 16647324 16647509 + 1.16667 NA intron (NM_020787, intron 2 of 5) intron (NM_020787, intron 2 of 5) 6434 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 142.667-6 chr1 117089065 117089196 + 1.16667 NA intron (NM_003594, intron 13 of 22) intron (NM_003594, intron 13 of 22) -5513 NR_030640 100126331 NR_030640 ENSG00000215930 MIR942 MIRN942|hsa-mir-942|mir-942 microRNA 942 ncRNA 286.501 chr13 54415469 54415810 + 1.16667 NA Intergenic MER67C|LTR|ERV1 -103591 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 137.833-57 chr9 24835958 24836107 + 1.16667 NA Intergenic L1ME4c|LINE|L1 -290135 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 189.333-43 chr5 22986712 22987044 + 1.16667 NA Intergenic Intergenic -133534 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 261.167-10 chr2 112315458 112315921 + 1.16667 NA intron (NM_198581, intron 5 of 11) AluSz6|SINE|Alu 40092 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 202-33 chr5 74753284 74753614 + 1.16667 NA intron (NR_104006, intron 5 of 19) AluSz|SINE|Alu 13668 NM_001281302 84340 Hs.277154 NM_032380 ENSG00000164347 GFM2 EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 G elongation factor mitochondrial 2 protein-coding 216.5-2 chr1 166185976 166186261 + 1.16667 NA Intergenic MIRb|SINE|MIR -19363 NR_135199 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 220.834-4 chr7 2571073 2571367 + 1.16667 NA intron (NM_152558, intron 3 of 21) AluJr4|SINE|Alu 12241 NM_001287502 23288 Hs.520627 NM_152558 ENSG00000106012 IQCE 1700028P05Rik|PAPA7 IQ motif containing E protein-coding 113.333-113 chr9 23639981 23640139 + 1.16667 NA intron (NR_121602, intron 9 of 27) MLT1J2|LTR|ERVL-MaLR 32339 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 202-37 chr5 155794733 155794930 + 1.16667 NA Intergenic L1MEg|LINE|L1 -531926 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 216.833-12 chr2 19375946 19376373 + 1.16667 NA Intergenic MLT2B4|LTR|ERVL -17536 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 253.5-4 chr1 235283624 235283937 + 1.16667 NA intron (NR_135074, intron 2 of 24) AluSz6|SINE|Alu 43707 NM_001206794 51742 Hs.575782 NM_016374 ENSG00000054267 ARID4B BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 AT-rich interaction domain 4B protein-coding 339.334 chr1 82643571 82643984 + 1.16667 NA Intergenic Intergenic -259406 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 149.833-4 chr10 33678115 33678373 + 1.16667 NA Intergenic Tigger17a|DNA|TcMar-Tigger 94436 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 175.167-22 chr15 42073853 42074074 + 1.16667 NA intron (NM_178034, intron 13 of 19) intron (NM_178034, intron 13 of 19) 20599 NM_178034 283748 Hs.380225 NM_178034 ENSG00000159337 PLA2G4D cPLA2delta phospholipase A2 group IVD protein-coding 441 chr10 17681761 17682432 + 1.16667 NA intron (NM_001324285, intron 3 of 14) L1ME1|LINE|L1 37945 NM_001324285 8027 Hs.335391 NM_003473 ENSG00000136738 STAM STAM-1|STAM1 signal transducing adaptor molecule protein-coding 246.5-3 chr1 79960014 79960270 + 1.16667 NA Intergenic THE1B-int|LTR|ERVL-MaLR -575613 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 138-10 chr1 241228137 241228382 + 1.16667 NA intron (NM_001282778, intron 2 of 16) MLT1G3|LTR|ERVL-MaLR 95987 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 245.834-10 chr7 107957502 107957740 + 1.16667 NA intron (NM_002291, intron 20 of 33) MIR3|SINE|MIR 45540 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 292.833-3 chr10 86553474 86554024 + 1.16667 NA Intergenic MLT1F2|LTR|ERVL-MaLR -31957 NM_015045 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 155.333-18 chr11 75344545 75344864 + 1.16667 NA intron (NM_004041, intron 1 of 15) intron (NM_004041, intron 1 of 15) 6957 NM_020251 408 Hs.503284 NM_004041 ENSG00000137486 ARRB1 ARB1|ARR1 arrestin beta 1 protein-coding 297-7 chr6 165974670 165975103 + 1.16667 NA intron (NR_026860, intron 1 of 1) intron (NR_026860, intron 1 of 1) -12665 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 192.667-39 chr4 62071390 62071635 + 1.16667 NA TTS (NR_110595) TTS (NR_110595) 90253 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 209-35 chr3 106787607 106787888 + 1.16667 NA Intergenic Intergenic 452891 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 149.333-75 chr5 27385469 27385725 + 1.16667 NA Intergenic Intergenic -86695 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 184.667-2 chr1 113937013 113937382 + 1.16667 NA intron (NM_001369807, intron 1 of 15) intron (NM_001369807, intron 1 of 15) 7353 NM_001369807 204851 Hs.532363 NM_152696 ENSG00000163349 HIPK1 Myak|Nbak2 homeodomain interacting protein kinase 1 protein-coding 219.834 chr1 100978442 100978763 + 1.16667 NA 3' UTR (NM_001144884, exon 12 of 12) 3' UTR (NM_001144884, exon 12 of 12) 47182 NM_015958 51611 Hs.440776 NM_015958 ENSG00000117543 DPH5 AD-018|CGI-30|HSPC143|NPD015 diphthamide biosynthesis 5 protein-coding 351.667-12 chr4 115590923 115591443 + 1.16667 NA Intergenic L2|LINE|L2 -477563 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 193.667-15 chr14 63656523 63656732 + 1.16667 NA Intergenic L2a|LINE|L2 -14756 NM_080666 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 169.5-2 chr1 106015419 106015679 + 1.16667 NA intron (NR_146609, intron 3 of 5) intron (NR_146609, intron 3 of 5) 12704 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 235.167-26 chr5 151431167 151431484 + 1.16667 NA Intergenic Intergenic -5721 NM_001308151 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 363.834 chr10 91977325 91977836 + 1.16667 NA intron (NM_003972, intron 14 of 37) L1MC1|LINE|L1 53810 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 136.667-5 chr1 162254071 162254285 + 1.16667 NA intron (NM_014697, intron 2 of 9) intron (NM_014697, intron 2 of 9) -88368 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 123.667-33 chr14 69371516 69371650 + 1.16667 NA Intergenic Intergenic 26716 NM_004450 2079 Hs.509791 NM_004450 ENSG00000100632 ERH DROER ERH mRNA splicing and mitosis factor protein-coding 136.334-3 chr2 45563942 45564075 + 1.16667 NA intron (NM_018079, intron 9 of 20) L1MB5|LINE|L1 47259 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 278-2 chr1 224513954 224514411 + 1.16667 NA intron (NM_001322302, intron 2 of 6) intron (NM_001322302, intron 2 of 6) 79333 NR_136294 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 162.667-29 chr17 31326017 31326250 + 1.16667 NA exon (NM_000267, exon 36 of 57) exon (NM_000267, exon 36 of 57) -4511 NM_014210 2123 Hs.591198 NM_014210 ENSG00000126860 EVI2A EVDA|EVI-2A|EVI2 ecotropic viral integration site 2A protein-coding 217.334-5 chr2 188246269 188246624 + 1.16667 NA intron (NR_126396, intron 1 of 2) intron (NR_126396, intron 1 of 2) 41245 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 135.334-9 chr7 47287649 47287914 + 1.16667 NA intron (NM_022748, intron 27 of 30) intron (NM_022748, intron 27 of 30) 177022 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 238.167-24 chr7 121905901 121906134 + 1.16667 NA intron (NM_001369396, intron 2 of 30) intron (NM_001369396, intron 2 of 30) 32856 NM_001369396 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 286.334-5 chr16 19120646 19121131 + 1.16667 NA non-coding (NR_028028, exon 2 of 2) non-coding (NR_028028, exon 2 of 2) 6924 NR_028028 162073 Hs.530899 NM_001034841 ENSG00000205730 ITPRIPL2 - ITPRIP like 2 protein-coding 174.334 chr12 27871530 27871763 + 1.16667 NA Intergenic Intergenic 91413 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 251-15 chr21 43651896 43652158 + 1.16667 NA intron (NM_007031, intron 3 of 8) intron (NM_007031, intron 3 of 8) 7461 NM_007031 11077 Hs.406157 NM_007031 ENSG00000160207 HSF2BP - heat shock transcription factor 2 binding protein protein-coding 249.5-28 chr5 126714191 126714490 + 1.16667 NA Intergenic L1ME3A|LINE|L1 62146 NR_134485 102723557 Hs.582207 NR_134485 ENSG00000251072 LMNB1-DT - LMNB1 divergent transcript ncRNA 174.834-7 chr5 17858874 17859055 + 1.16667 NA intron (NR_134286, intron 4 of 7) Kanga2_a|DNA|TcMar-Tc2 51690 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 294.167-2 chr1 160010231 160010723 + 1.16667 NA Intergenic L3|LINE|CR1 21513 NM_145167 93183 Hs.552810 NM_145167 ENSG00000143315 PIGM GPI-MT-I phosphatidylinositol glycan anchor biosynthesis class M protein-coding 253.834-3 chr16 24656554 24656836 + 1.16667 NA intron (NM_001351850, intron 2 of 23) L1M4|LINE|L1 14367 NR_122072 400511 Hs.592028 NR_122072 ENSG00000224310 LINC01567 LOCCS long intergenic non-protein coding RNA 1567 ncRNA 373.834 chr3 103182122 103182645 + 1.16667 NA Intergenic L1M4c|LINE|L1 341733 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 170.167-42 chr4 87466671 87466893 + 1.16667 NA Intergenic FLAM_A|SINE|Alu 44185 NM_198038 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 134.167-16 chr11 58298959 58299131 + 1.16667 NA Intergenic MER103C|DNA|hAT-Charlie -30785 NM_207374 81341 Hs.531507 NM_207374 ENSG00000172772 OR10W1 OR10W1P|OR10W1Q|OR11-236|UNQ6469 olfactory receptor family 10 subfamily W member 1 protein-coding 122.167-59 chr5 178640064 178640271 + 1.16667 NA Intergenic L1M5|LINE|L1 -13117 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 182.5-5 chr10 96714294 96714529 + 1.16667 NA intron (NM_152309, intron 1 of 16) MIRb|SINE|MIR 6103 NM_152309 118788 Hs.310456 NM_152309 ENSG00000155629 PIK3AP1 BCAP phosphoinositide-3-kinase adaptor protein 1 protein-coding 215.834-5 chr4 30714111 30714547 + 1.16667 NA Intergenic Intergenic -6040 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 298.5-3 chr10 74509614 74509996 + 1.16667 NA intron (NR_120673, intron 2 of 4) L1MA5A|LINE|L1 19519 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 358.334 chr14 30642203 30642747 + 1.16667 NA intron (NM_016106, intron 6 of 24) intron (NM_016106, intron 6 of 24) 20156 NM_001257376 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 154.167-59 chr6 134226197 134226440 + 1.16667 NA intron (NM_001143676, intron 2 of 13) L1MB4|LINE|L1 -48457 NM_001143677 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 186.167-6 chr10 18265019 18265442 + 1.16667 NA intron (NM_000724, intron 1 of 12) AluSx4|SINE|Alu 4508 NM_001330060 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 203.5-18 chr19 46945483 46945738 + 1.16667 NA intron (NM_004491, intron 3 of 6) intron (NM_004491, intron 3 of 6) -74227 NM_002517 4861 Hs.79564 NM_002517 ENSG00000130751 NPAS1 MOP5|PASD5|bHLHe11 neuronal PAS domain protein 1 protein-coding 278.667-20 chr8 70966083 70966437 + 1.16667 NA Intergenic AluSz6|SINE|Alu 296921 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 310.5-2 chr1 247061574 247062027 + 1.16667 NA intron (NM_033213, intron 1 of 3) MLT1A|LTR|ERVL-MaLR 17011 NM_001204220 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 132.167-63 chr7 20695875 20696033 + 1.16667 NA intron (NM_178559, intron 7 of 18) L1ME1|LINE|L1 48624 NM_001163993 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 146-61 chr6 159627619 159627794 + 1.16667 NA Intergenic Intergenic 65535 NM_001024465 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 165.833-35 chr2 129586361 129586636 + 1.16667 NA Intergenic Intergenic 290993 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 143-61 chr5 12176064 12176279 + 1.16667 NA Intergenic Intergenic -271725 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 243.334-3 chr18 37424630 37425109 + 1.16667 NA intron (NM_001353724, intron 2 of 12) intron (NM_001353724, intron 2 of 12) 41635 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA 263.667-21 chr8 111002921 111003425 + 1.16667 NA intron (NR_125416, intron 4 of 4) L1MC1|LINE|L1 24260 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 127.667-75 chr5 127851914 127852066 + 1.16667 NA intron (NM_001317938, intron 5 of 6) Charlie17|DNA|hAT-Charlie 148601 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 199.167-48 chr8 122577199 122577510 + 1.16667 NA Intergenic Intergenic -8710 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 250.334-4 chr8 82678263 82678614 + 1.16667 NA Intergenic Intergenic -233666 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 168.167-32 chr2 120513307 120513635 + 1.16667 NA Intergenic Charlie17b|DNA|hAT-Charlie -47122 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 251.001 chr14 51449349 51449576 + 1.16667 NA Intergenic Intergenic -39666 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 232-8 chr12 40201258 40201608 + 1.16667 NA Intergenic L1M3|LINE|L1 -23564 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 226.334-2 chr12 98466864 98467106 + 1.16667 NA Intergenic Intergenic -9840 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 220.667-3 chr10 118030928 118031236 + 1.16667 NA intron (NM_014904, intron 3 of 4) intron (NM_014904, intron 3 of 4) -15739 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 267.5-15 chr8 117085412 117085804 + 1.16667 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -49387 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 137-103 chr9 130739405 130739645 + 1.16667 NA intron (NM_007313, intron 1 of 10) intron (NM_007313, intron 1 of 10) 25644 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 284.334 chr16 9253482 9253789 + 1.16667 NA Intergenic THE1B|LTR|ERVL-MaLR -101953 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 282.834-5 chr9 27696596 27697013 + 1.16667 NA Intergenic L2c|LINE|L2 -122938 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 234.001 chr20 47496848 47497219 + 1.16667 NA Intergenic MLT1G1|LTR|ERVL-MaLR -4854 NM_001174088 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 173.334-2 chr14 76031622 76031873 + 1.16667 NA intron (NR_045664, intron 3 of 7) intron (NR_045664, intron 3 of 7) 45984 NM_001255995 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 208.834-4 chr12 71049253 71049516 + 1.16667 NA Intergenic Intergenic 108425 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 135.167-45 chr2 49698601 49698805 + 1.16667 NA Intergenic L1PA7|LINE|L1 275500 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 250.5-24 chr8 102015190 102015602 + 1.16667 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) 30964 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 244.334-5 chr16 66690466 66690687 + 1.16667 NA intron (NM_181521, intron 1 of 3) intron (NM_181521, intron 1 of 3) 6167 NM_178818 146223 Hs.643961 NM_178818 ENSG00000183723 CMTM4 CKLFSF4 CKLF like MARVEL transmembrane domain containing 4 protein-coding 179.167-17 chr14 73849587 73849867 + 1.16667 NA Intergenic AluSx|SINE|Alu -2104 NM_001371327 293.501 chr15 95656034 95656299 + 1.16667 NA Intergenic Intergenic 223073 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 134.334-3 chr3 101184792 101184969 + 1.16667 NA Intergenic AluJo|SINE|Alu 135695 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 261 chr1 163010958 163011260 + 1.16667 NA Intergenic L1MA8|LINE|L1 -57497 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 239.167-17 chr7 33047284 33047857 + 1.16667 NA intron (NM_001002009, intron 1 of 9) A-rich|Low_complexity|Low_complexity -6405 NM_001166118 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 397-3 chr6 127324016 127324778 + 1.16667 NA intron (NM_001002030, intron 3 of 5) MIRc|SINE|MIR 18010 NM_001139510 55862 Hs.486410 NM_018479 ENSG00000093144 ECHDC1 HEL-S-76|MMCD|dJ351K20.2 ethylmalonyl-CoA decarboxylase 1 protein-coding 157.5-31 chr2 37224541 37224997 + 1.16667 NA intron (NM_005760, intron 2 of 15) intron (NM_005760, intron 2 of 15) 6827 NM_005760 10153 Hs.135406 NM_005760 ENSG00000115816 CEBPZ CBF|CBF2|HSP-CBF|NOC1 CCAAT enhancer binding protein zeta protein-coding 320.167 chr12 4264297 4264708 + 1.16667 NA intron (NR_149145, intron 1 of 3) MER2|DNA|TcMar-Tigger -9260 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 343.667-2 chr2 51433009 51433582 + 1.16667 NA intron (NR_135237, intron 4 of 10) L1MC2|LINE|L1 400694 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 145.5-57 chr5 7543198 7543573 + 1.16667 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 147247 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 159.167-71 chr9 36066169 36066318 + 1.16667 NA intron (NM_021111, intron 6 of 20) intron (NM_021111, intron 6 of 20) 29330 NM_001316346 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 217.5-2 chr10 57655414 57655698 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR -350997 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 236.334-12 chr5 143168062 143168416 + 1.16667 NA intron (NM_001349547, intron 20 of 21) intron (NM_001349547, intron 20 of 21) -24261 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 136.167-32 chr18 59616450 59616622 + 1.16667 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 80887 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 278-15 chr7 121676691 121677024 + 1.16667 NA Intergenic Intergenic -196304 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 118.334-5 chr2 53039377 53039504 + 1.16667 NA Intergenic L1MC3|LINE|L1 -336825 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 207.834-7 chr3 21057176 21057440 + 1.16667 NA Intergenic (TTGTT)n|Simple_repeat|Simple_repeat -348418 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 291.667-6 chr10 59180316 59180710 + 1.16667 NA intron (NM_001143774, intron 1 of 4) intron (NM_001143774, intron 1 of 4) 3046 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 153-5 chr10 16880057 16880247 + 1.16667 NA intron (NM_001081, intron 56 of 66) MLT1K|LTR|ERVL-MaLR -62698 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 362.167-2 chr10 121996631 121997075 + 1.16667 NA intron (NM_206862, intron 1 of 22) L2|LINE|L2 7690 NM_001291877 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 231.167-31 chr7 10358260 10358509 + 1.16667 NA Intergenic L1PA15|LINE|L1 -344292 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 121-33 chr16 86308959 86309132 + 1.16667 NA Intergenic AluJb|SINE|Alu 22614 NR_038438 146513 Hs.434338 NR_038438 ENSG00000268532 LINC02135 - long intergenic non-protein coding RNA 2135 ncRNA 206.334-6 chr2 147622823 147623146 + 1.16667 NA Intergenic Intergenic -221533 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 262.167-6 chr13 90171292 90171544 + 1.16667 NA Intergenic Intergenic -51701 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 145.667-33 chr14 79200974 79201200 + 1.16667 NA non-coding (NR_135159, exon 2 of 2) non-coding (NR_135159, exon 2 of 2) 1105 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 146.167-45 chr4 87606406 87606608 + 1.16667 NA Intergenic L1MD|LINE|L1 -2022 NM_014208 1834 Hs.678914 NM_014208 ENSG00000152591 DSPP DFNA39|DGI1|DMP3|DPP|DSP dentin sialophosphoprotein protein-coding 270.667-15 chr21 16399020 16399425 + 1.16667 NA intron (NR_136543, intron 3 of 4) intron (NR_136543, intron 3 of 4) -19981 NR_136544 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 204.5-45 chr9 91441073 91441429 + 1.16667 NA Intergenic L1MA9|LINE|L1 -16625 NM_001289999 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 130-94 chr7 44318768 44318973 + 1.16667 NA intron (NM_172081, intron 1 of 18) intron (NM_172081, intron 1 of 18) 6724 NM_001293170 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 183.667-60 chr5 19845439 19845757 + 1.16667 NA intron (NM_001349562, intron 2 of 13) L1M4|LINE|L1 40674 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 203.667-36 chr9 2185243 2185518 + 1.16667 NA intron (NM_001289397, intron 30 of 32) L1MB2|LINE|L1 26924 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 278.834 chr5 17313003 17313345 + 1.16667 NA Intergenic Intergenic 74136 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 217.667-45 chr7 26842285 26842609 + 1.16667 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 15276 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 292.5-9 chr2 65026364 65026805 + 1.16667 NA Intergenic AluSz|SINE|Alu -29832 NM_015147 23177 Hs.709257 NM_015147 ENSG00000011523 CEP68 KIAA0582 centrosomal protein 68 protein-coding 146-40 chr2 175320319 175320566 + 1.16667 NA Intergenic Intergenic -138732 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 215.334-5 chr9 17344385 17344653 + 1.16667 NA intron (NM_001365029, intron 12 of 25) L2c|LINE|L2 209479 NM_001286984 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 175.334-6 chr2 32540035 32540487 + 1.16667 NA intron (NM_016252, intron 61 of 73) intron (NM_016252, intron 61 of 73) 8108 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 164.167-68 chrX 139631723 139632016 + 1.16667 NA intron (NM_001099855, intron 5 of 27) intron (NM_001099855, intron 5 of 27) 10972 NM_001171877 4168 Hs.387262 NM_005369 ENSG00000101977 MCF2 ARHGEF21|DBL MCF.2 cell line derived transforming sequence protein-coding 113.334-9 chr6 158422870 158423004 + 1.16667 NA intron (NM_020245, intron 2 of 13) LTR9B|LTR|ERV1 99955 NR_145798 109623462 NR_145798 SNORA116 - small nucleolar RNA, H/ACA box 116 snoRNA 230.667-14 chr2 167139948 167140287 + 1.16667 NA intron (NM_152381, intron 3 of 10) intron (NM_152381, intron 3 of 10) 838 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 376.334-2 chr22 19272601 19273066 + 1.16667 NA intron (NM_007098, intron 2 of 32) AluJr|SINE|Alu 18886 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 258.667-8 chr14 54094196 54094530 + 1.16667 NA Intergenic L1MB8|LINE|L1 -137472 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 173.833-40 chr4 113388655 113388876 + 1.16667 NA Intergenic L2|LINE|L2 95926 NM_001354280 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 361.001 chr1 221656554 221656865 + 1.16667 NA Intergenic MER5A1|DNA|hAT-Charlie 80191 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 240-9 chr13 94264436 94264803 + 1.16667 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) -76628 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 125.833-84 chr7 119477936 119478099 + 1.16667 NA Intergenic Intergenic 429358 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 294-13 chr9 21244479 21244937 + 1.16667 NA Intergenic Intergenic -4703 NM_002172 3448 Hs.93907 NM_002172 ENSG00000228083 IFNA14 IFN-alphaH|LEIF2H interferon alpha 14 protein-coding 224.167-29 chr8 123023107 123023389 + 1.16667 NA intron (NM_024295, intron 4 of 7) intron (NM_024295, intron 4 of 7) 2524 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 138-71 chr3 98917436 98917567 + 1.16667 NA Intergenic Intergenic -15806 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 285.5-14 chr4 31053616 31054251 + 1.16667 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -117211 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 217.834-3 chr14 76545302 76545611 + 1.16667 NA Intergenic Intergenic 174109 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 138.5-49 chr22 40304230 40304524 + 1.16667 NA intron (NM_015088, intron 13 of 20) Charlie2a|DNA|hAT-Charlie -42123 NM_001363840 158 Hs.75527 NM_000026 ENSG00000239900 ADSL AMPS|ASASE|ASL adenylosuccinate lyase protein-coding 208-23 chr3 18193621 18193929 + 1.16667 NA intron (NR_161333, intron 4 of 4) L1ME4a|LINE|L1 231223 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 264.667-23 chr5 89057690 89058078 + 1.16667 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -153779 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 280.667-24 chr6 110710528 110710911 + 1.16667 NA intron (NM_001300963, intron 3 of 13) MLT1A0|LTR|ERVL-MaLR -103902 NM_001287215 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 238.167-3 chr10 61961144 61961520 + 1.16667 NA intron (NM_032199, intron 3 of 9) MER113|DNA|hAT-Charlie 59633 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 171.167-15 chr11 100591987 100592179 + 1.16667 NA Intergenic Intergenic -95205 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 263.5-18 chr3 57010783 57011096 + 1.16667 NA intron (NM_001128615, intron 2 of 12) intron (NM_001128615, intron 2 of 12) -49725 NM_181727 353324 Hs.129794 NM_181727 ENSG00000186451 SPATA12 SRG5 spermatogenesis associated 12 protein-coding 195.5-39 chr8 12721666 12721930 + 1.16667 NA TTS (NM_001329976) TTS (NM_001329976) 2666 NR_049876 100847038 NR_049876 ENSG00000264512 MIR5692A2 - microRNA 5692a-2 ncRNA 257.667-16 chr6 106950618 106950888 + 1.16667 NA Intergenic Intergenic 23286 NM_001291739 100133941 Hs.644105 NM_013230 ENSG00000272398 CD24 CD24A CD24 molecule protein-coding 189.333-51 chr8 27801626 27801868 + 1.16667 NA intron (NM_001017420, intron 10 of 10) L1MC4|LINE|L1 27193 NM_001017420 157570 Hs.99480 NM_001017420 ENSG00000171320 ESCO2 2410004I17Rik|EFO2|EFO2p|RBS|hEFO2 establishment of sister chromatid cohesion N-acetyltransferase 2 protein-coding 318.833-8 chr3 103812748 103813142 + 1.16667 NA Intergenic L1MC4|LINE|L1 -288829 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 196 chr1 56020265 56020503 + 1.16667 NA Intergenic Tigger3b|DNA|TcMar-Tigger 75297 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 119.5-14 chr10 37912345 37912580 + 1.16667 NA Intergenic L1MA9|LINE|L1 -54359 NR_147992 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 254.667-20 chr21 28617748 28618201 + 1.16667 NA Intergenic AluJb|SINE|Alu 78656 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 207.334-4 chr21 31846184 31846476 + 1.16667 NA Intergenic AluJo|SINE|Alu -26690 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 200.667-50 chr7 70767771 70768018 + 1.16667 NA intron (NM_015570, intron 9 of 18) intron (NM_015570, intron 9 of 18) -364250 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 240.167-17 chr7 48344847 48345368 + 1.16667 NA intron (NM_152701, intron 29 of 61) Tigger3b|DNA|TcMar-Tigger 173649 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 177-38 chr2 146652525 146652862 + 1.16667 NA Intergenic Intergenic 65636 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 334.334 chr14 58764380 58764881 + 1.16667 NA Intergenic Intergenic -63658 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 143-48 chr3 120406782 120406960 + 1.16667 NA intron (NM_007085, intron 6 of 10) Tigger4b|DNA|TcMar-Tigger -11142 NR_029584 406975 NR_029584 ENSG00000284121 MIR198 MIRN198|miR-198 microRNA 198 ncRNA 301-5 chr5 36283047 36283710 + 1.16667 NA intron (NM_001323279, intron 1 of 12) intron (NM_001323279, intron 1 of 12) 18524 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 258.667-19 chr5 22414964 22415341 + 1.16667 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -201302 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 168.667-15 chr14 27574960 27575180 + 1.16667 NA intron (NR_148991, intron 2 of 2) L1PA15|LINE|L1 -37518 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 223.334-3 chr15 58632097 58632496 + 1.16667 NA intron (NM_001320570, intron 8 of 14) L1MC5a|LINE|L1 61311 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 195-47 chr8 122351922 122352099 + 1.16667 NA Intergenic Intergenic 216634 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 195.334-3 chr10 58089159 58089354 + 1.16667 NA Intergenic L1M5|LINE|L1 178638 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 375.334-4 chr5 40256069 40256470 + 1.16667 NA Intergenic Intergenic 203978 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 190-22 chr16 84478994 84479197 + 1.16667 NA 3' UTR (NM_020947, exon 8 of 8) 3' UTR (NM_020947, exon 8 of 8) -11734 NR_146503 105371374 Hs.610979 NR_146503 ENSG00000261286 ATP2C2-AS1 - ATP2C2 antisense RNA 1 ncRNA 284.501-2 chr1 217717443 217717701 + 1.16667 NA intron (NM_138796, intron 5 of 10) AluSx1|SINE|Alu 67548 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 243.667-14 chr16 76703053 76703379 + 1.16667 NA Intergenic Intergenic 68218 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 196.334-5 chr12 19339341 19339516 + 1.16667 NA intron (NM_001256787, intron 15 of 25) intron (NM_001256787, intron 15 of 25) -100064 NM_153207 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 148.667-47 chr3 81677320 81677569 + 1.16667 NA intron (NM_000158, intron 2 of 15) intron (NM_000158, intron 2 of 15) 84201 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 250-16 chr3 99203869 99204198 + 1.16667 NA Intergenic Intergenic -302338 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 224.5-9 chr14 79898003 79898395 + 1.16667 NA Intergenic Intergenic -313220 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 171.833-38 chr5 77219334 77219732 + 1.16667 NA intron (NM_001029853, intron 1 of 20) intron (NM_001029853, intron 1 of 20) 8853 NM_001029851 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 282.667-12 chr6 35874521 35874997 + 1.16667 NA intron (NM_003137, intron 6 of 15) intron (NM_003137, intron 6 of 15) 46339 NM_003137 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 222.167-7 chr12 4167139 4167353 + 1.16667 NA Intergenic MIRc|SINE|MIR -106516 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 313.833 chr1 110423375 110423850 + 1.16667 NA Intergenic LTR39|LTR|ERV1 -15688 NM_006402 10542 Hs.439815 NM_006402 ENSG00000134248 LAMTOR5 HBXIP|XIP late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 protein-coding 278.167-10 chr8 120269465 120269823 + 1.16667 NA intron (NM_021110, intron 25 of 47) intron (NM_021110, intron 25 of 47) 144542 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 260.167-15 chr8 111308980 111309383 + 1.16667 NA Intergenic L1ME1|LINE|L1 -67458 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 196.334 chr1 102987024 102987234 + 1.16667 NA intron (NM_001854, intron 30 of 66) intron (NM_001854, intron 30 of 66) 121367 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 143.834-4 chr4 67751261 67751415 + 1.16667 NA intron (NM_000406, intron 1 of 2) MIRc|SINE|MIR 4748 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 186.833-23 chr2 46824346 46824678 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -3352 NR_024452 100134259 Hs.114449 NR_024452 ENSG00000239332 LINC01119 - long intergenic non-protein coding RNA 1119 ncRNA 335.167 chr11 2609394 2609718 + 1.16667 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 90442 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 309.834-4 chr2 221647906 221648236 + 1.16667 NA Intergenic Intergenic -73869 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 159.667-80 chr6 149478341 149478568 + 1.16667 NA intron (NM_207360, intron 1 of 5) Charlie1b|DNA|hAT-Charlie 6560 NM_207360 340152 Hs.632618 NM_207360 ENSG00000178199 ZC3H12D C6orf95|MCPIP4|TFL|dJ281H8.1|p34 zinc finger CCCH-type containing 12D protein-coding 163.667-45 chr22 26182813 26183062 + 1.16667 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 13463 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 145.167-35 chr2 209315837 209316122 + 1.16667 NA Intergenic Intergenic -108068 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 157.333-4 chr1 204274042 204274269 + 1.16667 NA intron (NM_014935, intron 2 of 22) AluJr|SINE|Alu -60167 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 133.667-35 chr15 56602715 56603003 + 1.16667 NA Intergenic Cheshire|DNA|hAT-Charlie 131227 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 163-10 chr10 114197144 114197342 + 1.16667 NA intron (NM_198795, intron 3 of 25) L1MD1|LINE|L1 17890 NM_001365891 56165 Hs.333132 NM_198795 ENSG00000095627 TDRD1 CT41.1 tudor domain containing 1 protein-coding 157.667-31 chr2 24007008 24007170 + 1.16667 NA Intergenic MLT1J|LTR|ERVL-MaLR -2996 NM_001346880 388931 Hs.407482 NM_001080473 ENSG00000205639 MFSD2B - major facilitator superfamily domain containing 2B protein-coding 232.334-2 chr2 39363095 39363330 + 1.16667 NA intron (NM_003618, intron 2 of 33) L1MB1|LINE|L1 74073 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 236.333-4 chr10 111157419 111157728 + 1.16667 NA Intergenic Intergenic 43282 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 187.667-49 chr7 42069782 42070085 + 1.16667 NA intron (NM_000168, intron 4 of 14) L2a|LINE|L2 167276 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 172.5-58 chr8 87980621 87980783 + 1.16667 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -106687 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 345.168 chr11 105040016 105040322 + 1.16667 NA Intergenic L1ME2|LINE|L1 -5012 NM_033295 834 Hs.2490 NM_001223 ENSG00000137752 CASP1 ICE|IL1BC|P45 caspase 1 protein-coding 265.501 chr10 100466249 100466539 + 1.16667 NA intron (NM_003393, intron 1 of 5) intron (NM_003393, intron 1 of 5) 3385 NM_003393 7479 Hs.421281 NM_003393 ENSG00000075290 WNT8B - Wnt family member 8B protein-coding 180.167-23 chr18 2443800 2444195 + 1.16667 NA Intergenic L3|LINE|CR1 127508 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 142.834-6 chr5 35828849 35829056 + 1.16667 NA Intergenic L1ME4c|LINE|L1 -27939 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 533.501 chr17 60637859 60638807 + 1.16667 NA intron (NM_003620, intron 3 of 5) intron (NM_003620, intron 3 of 5) 38150 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 127.5-49 chr4 6088556 6088819 + 1.16667 NA intron (NM_001306134, intron 2 of 11) intron (NM_001306134, intron 2 of 11) -70141 NM_001364689 389197 Hs.479065 NM_207405 ENSG00000181215 C4orf50 - chromosome 4 open reading frame 50 protein-coding 219.834-4 chr14 54966412 54966670 + 1.16667 NA exon (NM_001008396, exon 17 of 25) exon (NM_001008396, exon 17 of 25) 60558 NM_007086 11169 Hs.385998 NM_007086 ENSG00000198554 WDHD1 AND-1|AND1|CHTF4|CTF4 WD repeat and HMG-box DNA binding protein 1 protein-coding 367.501-3 chr5 62602389 62602818 + 1.16667 NA intron (NM_016338, intron 29 of 29) intron (NM_016338, intron 29 of 29) 23784 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 202.333-48 chr8 75572364 75572732 + 1.16667 NA Intergenic Intergenic 32580 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 122.167-70 chr8 76911062 76911210 + 1.16667 NA Intergenic Intergenic 55714 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 198.5-10 chr14 62923015 62923353 + 1.16667 NA intron (NM_139318, intron 7 of 10) L1MA9|LINE|L1 122274 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 260.333-13 chr4 66366050 66366570 + 1.16667 NA Intergenic MIRc|SINE|MIR 89486 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 279.667-18 chr8 111772403 111772803 + 1.16667 NA Intergenic AluSp|SINE|Alu 395964 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 220.834 chr13 103796904 103797190 + 1.16667 NA Intergenic AluJb|SINE|Alu 371847 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 174.167-33 chr5 33325344 33325543 + 1.16667 NA Intergenic MER1B|DNA|hAT-Charlie 95708 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 262.667-26 chr5 73570246 73570636 + 1.16667 NA intron (NM_001284431, intron 4 of 11) intron (NM_001284431, intron 4 of 11) 4698 NM_032175 84135 Hs.406703 NM_032175 ENSG00000164338 UTP15 NET21 UTP15 small subunit processome component protein-coding 285.5-15 chr6 64981071 64981574 + 1.16667 NA intron (NM_001292009, intron 14 of 43) L2|LINE|L2 -320096 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 269.833-17 chr5 147025366 147025871 + 1.16667 NA intron (NM_001271900, intron 2 of 10) L1ME1|LINE|L1 30519 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 140.167-49 chr4 93784168 93784397 + 1.16667 NA Intergenic Intergenic -44471 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 385.667 chr5 25470008 25470675 + 1.16667 NA Intergenic Intergenic 279388 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 315-9 chr9 27895845 27896261 + 1.16667 NA Intergenic Intergenic -322187 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 225.333-34 chr8 141838112 141838473 + 1.16667 NA Intergenic L1MEf|LINE|L1 -51979 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 239-18 chr8 41087314 41087746 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 183613 NR_049801 100847068 NR_049801 ENSG00000263372 MIR548AO - microRNA 548ao ncRNA 216.167-6 chr12 60869338 60869644 + 1.16667 NA Intergenic MER20B|DNA|hAT-Charlie 1180121 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 310.5-3 chr10 98995729 98996198 + 1.16667 NA intron (NM_021828, intron 3 of 11) L1MD3|LINE|L1 -71395 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 263.167-13 chr5 45213580 45213894 + 1.16667 NA Intergenic MER57A-int|LTR|ERV1 404790 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 179.334-8 chr5 122703378 122703641 + 1.16667 NA intron (NR_109881, intron 6 of 11) intron (NR_109881, intron 6 of 11) 27051 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 240.167-7 chr15 90676232 90676454 + 1.16667 NA intron (NR_120372, intron 2 of 3) intron (NR_120372, intron 2 of 3) 16109 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LINC01585 - long intergenic non-protein coding RNA 1585 ncRNA 410.334 chr11 110089121 110089548 + 1.16667 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -4058 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 175-43 chr4 106803966 106804553 + 1.16667 NA Intergenic Intergenic 232054 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 207.833-13 chr16 84403191 84403581 + 1.16667 NA intron (NM_014861, intron 2 of 26) AluJo|SINE|Alu -3202 NM_001291454 9914 Hs.6168 NM_014861 ENSG00000064270 ATP2C2 SPCA2 ATPase secretory pathway Ca2+ transporting 2 protein-coding 166.167-7 chr11 83854610 83854800 + 1.16667 NA intron (NM_001142699, intron 16 of 27) L1MC1|LINE|L1 -172280 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 192-31 chr4 47646456 47646671 + 1.16667 NA intron (NM_006587, intron 13 of 21) intron (NM_006587, intron 13 of 21) -6106 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 217.5-48 chr7 93646128 93646448 + 1.16667 NA Intergenic L1ME1|LINE|L1 -70640 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 301.834-6 chr8 127744223 127744701 + 1.16667 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat 8231 NM_002467 4609 Hs.202453 NM_002467 ENSG00000136997 MYC MRTL|MYCC|bHLHe39|c-Myc MYC proto-oncogene, bHLH transcription factor protein-coding 186.667-58 chr4 55570583 55570795 + 1.16667 NA intron (NM_152401, intron 3 of 5) intron (NM_152401, intron 3 of 5) 21556 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 172.833-27 chr2 124516056 124516287 + 1.16667 NA intron (NM_130773, intron 8 of 23) intron (NM_130773, intron 8 of 23) 490884 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 318.167-3 chr18 6570992 6571468 + 1.16667 NA intron (NR_120518, intron 2 of 5) intron (NR_120518, intron 2 of 5) 59814 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 222-6 chr11 28922374 28922616 + 1.16667 NA Intergenic Intergenic -444947 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 293.667-7 chr2 225460072 225460532 + 1.16667 NA intron (NM_001371273, intron 3 of 7) intron (NM_001371273, intron 3 of 7) 59416 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 267.833-3 chr11 20294776 20295227 + 1.16667 NA Intergenic Intergenic -68684 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 345-4 chr9 89493998 89494383 + 1.16667 NA intron (NM_001371194, intron 1 of 15) intron (NM_001371194, intron 1 of 15) 1466 NM_001371195 415.334 chr12 61767554 61767992 + 1.16667 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 425066 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 299.667 chr1 178116738 178117463 + 1.16667 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) 22996 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 136.5-68 chr4 79100849 79100985 + 1.16667 NA intron (NR_038342, intron 3 of 5) L1PA15|LINE|L1 129169 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 177.667-46 chr20 14232783 14232955 + 1.16667 NA intron (NM_001351663, intron 3 of 17) Tigger1|DNA|TcMar-Tigger 104743 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 170.334-9 chr6 57013777 57013988 + 1.16667 NA intron (NM_152731, intron 3 of 6) L2a|LINE|L2 -32650 NM_001286275 57691 Hs.709521 NM_020931 ENSG00000168116 KIAA1586 - KIAA1586 protein-coding 308.5-8 chr3 119174323 119174711 + 1.16667 NA intron (NM_006952, intron 1 of 7) FLAM_A|SINE|Alu 919 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 261.5-15 chr3 62758416 62758834 + 1.16667 NA intron (NM_003716, intron 2 of 29) (TGTTTT)n|Simple_repeat|Simple_repeat 116791 NM_183394 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 145.167-52 chr4 61909260 61909447 + 1.16667 NA intron (NM_001371343, intron 11 of 23) intron (NM_001371343, intron 11 of 23) 252412 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 123.167-25 chr13 69724269 69724461 + 1.16667 NA intron (NM_001286725, intron 7 of 9) MER4B|LTR|ERV1 -382848 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 134.5-21 chr11 97478646 97478831 + 1.16667 NA Intergenic Intergenic 970313 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 238.001-4 chr8 133810270 133810481 + 1.16667 NA Intergenic Intergenic -33023 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 270.334-9 chr4 52003193 52003636 + 1.16667 NA intron (NM_001024611, intron 2 of 4) L1ME3G|LINE|L1 16949 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 157.334-2 chr12 70118263 70118539 + 1.16667 NA Intergenic Intergenic -124629 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 242.834-7 chr8 82015955 82016446 + 1.16667 NA Intergenic Intergenic -173914 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 419.333-4 chr9 24304155 24304898 + 1.16667 NA Intergenic L1M4c|LINE|L1 241150 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 169.667-28 chr16 60606575 60606824 + 1.16667 NA Intergenic Intergenic -246906 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 256.667-6 chr10 52797150 52797417 + 1.16667 NA Intergenic THE1D|LTR|ERVL-MaLR -25583 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 238.167 chr1 190382333 190382577 + 1.16667 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 93555 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 286.5-20 chr9 131518309 131518927 + 1.16667 NA intron (NR_148397, intron 13 of 18) intron (NR_148397, intron 13 of 18) 12645 NM_031432 83549 Hs.9597 NM_031432 ENSG00000130717 UCK1 URK1 uridine-cytidine kinase 1 protein-coding 316.167 chr12 96497389 96497695 + 1.16667 NA intron (NM_001306084, intron 1 of 67) MER41D|LTR|ERV1 7965 NM_001367885 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 215.667-30 chr3 99207841 99208042 + 1.16667 NA Intergenic Intergenic -306246 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 233-20 chr7 21513766 21514062 + 1.16667 NA 3' UTR (NM_001326542, exon 6 of 6) 3' UTR (NM_001326542, exon 6 of 6) -29125 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 231.5-5 chr12 61636545 61636860 + 1.16667 NA Intergenic L1MC5|LINE|L1 556137 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 121.5-62 chr20 23964331 23964510 + 1.16667 NA Intergenic LOR1-int|LTR|ERV1 22455 NM_178312 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 275.167-7 chr2 70971740 70972203 + 1.16667 NA Intergenic L1MB8|LINE|L1 -6474 NM_001369683 79998 Hs.512744 NM_024933 ENSG00000144031 ANKRD53 - ankyrin repeat domain 53 protein-coding 188.5-54 chr8 116682761 116682991 + 1.16667 NA intron (NM_003756, intron 2 of 7) intron (NM_003756, intron 2 of 7) 30776 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 323.834-2 chr7 86100482 86100888 + 1.16667 NA Intergenic Intergenic -543224 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 203.167-32 chr5 6625579 6626049 + 1.16667 NA intron (NM_001193455, intron 2 of 17) intron (NM_001193455, intron 2 of 17) 7230 NR_037947 54888 Hs.481526 NM_017755 ENSG00000037474 NSUN2 MISU|MRT5|SAKI|TRM4 NOP2/Sun RNA methyltransferase 2 protein-coding 322.834-2 chr15 84849817 84850328 + 1.16667 NA intron (NM_020778, intron 5 of 13) L1MEf|LINE|L1 33392 NM_020778 57538 Hs.459183 NM_020778 ENSG00000136383 ALPK3 CMH27|MAK|MIDORI alpha kinase 3 protein-coding 175.167-39 chr5 153929882 153930169 + 1.16667 NA Intergenic L1MA3|LINE|L1 -31038 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 322.167 chr10 19826072 19826455 + 1.16667 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 9831 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 121.5-74 chr4 43739924 43740190 + 1.16667 NA Intergenic MLT1A|LTR|ERVL-MaLR -247514 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 317.834-4 chr5 20107472 20107808 + 1.16667 NA intron (NM_001291956, intron 2 of 14) MLT1B|LTR|ERVL-MaLR -119440 NM_001349561 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 294.334-8 chr8 120515658 120516001 + 1.16667 NA intron (NM_022045, intron 17 of 21) intron (NM_022045, intron 17 of 21) 70410 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 227.167-31 chr8 85146320 85146850 + 1.16667 NA TTS (NM_001349638) TTS (NM_001349638) 30456 NR_134311 102723322 Hs.535913 NR_134311 ENSG00000260493 LOC102723322 - uncharacterized LOC102723322 ncRNA 178.167-45 chr7 80097937 80098213 + 1.16667 NA Intergenic Intergenic -36756 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 117.333-41 chr19 57298250 57298439 + 1.16667 NA Intergenic L1M2a|LINE|L1 17859 NM_006635 10794 Hs.99971 NM_006635 ENSG00000197714 ZNF460 HZF8|ZNF272 zinc finger protein 460 protein-coding 164-4 chr1 241462292 241462548 + 1.16667 NA Intergenic Intergenic 57365 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 154.834-6 chr6 54531971 54532268 + 1.16667 NA Intergenic MIR3|SINE|MIR 223678 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 249.667-29 chr3 130583929 130584441 + 1.16667 NA intron (NM_001102608, intron 9 of 35) intron (NM_001102608, intron 9 of 35) 23851 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 202.333 chr1 163649910 163650235 + 1.16667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -226881 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 164.167-34 chr2 102962484 102962684 + 1.16667 NA Intergenic Intergenic 21845 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 141.167-64 chr5 161370303 161370529 + 1.16667 NA intron (NM_000813, intron 6 of 9) intron (NM_000813, intron 6 of 9) 177708 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 286.5-6 chr19 41281714 41282455 + 1.16667 NA intron (NM_144732, intron 7 of 14) intron (NM_144732, intron 7 of 14) 17003 NM_001301016 11100 Hs.155218 NM_007040 ENSG00000105323 HNRNPUL1 E1B-AP5|E1BAP5|HNRPUL1 heterogeneous nuclear ribonucleoprotein U like 1 protein-coding 296.334 chr7 110078138 110078482 + 1.16667 NA Intergenic L1MA2|LINE|L1 -118097 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 228.834-4 chr5 12881370 12881670 + 1.16667 NA intron (NR_147005, intron 4 of 4) L1PA13|LINE|L1 151366 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 183.333-62 chr8 111973644 111973879 + 1.16667 NA Intergenic L1MA6|LINE|L1 597122 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 209.667-7 chr12 7403792 7404149 + 1.16667 NA intron (NM_001297650, intron 5 of 19) intron (NM_001297650, intron 5 of 19) 40215 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 220.334-9 chr7 11116928 11117289 + 1.16667 NA intron (NR_033436, intron 16 of 16) intron (NR_033436, intron 16 of 16) 143236 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 170.334-4 chr2 123550713 123550930 + 1.16667 NA Intergenic L1MB5|LINE|L1 474353 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 219.334-3 chr12 127981341 127981604 + 1.16667 NA intron (NR_126452, intron 2 of 3) intron (NR_126452, intron 2 of 3) 2419 NR_126452 104472718 Hs.628661 NR_126452 LINC00508 - long intergenic non-protein coding RNA 508 ncRNA 189.5-10 chr12 39381247 39381497 + 1.16667 NA intron (NM_001173464, intron 1 of 37) intron (NM_001173464, intron 1 of 37) 61748 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 534 chr21 27481282 27482213 + 1.16667 NA Intergenic Intergenic -240632 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 276.834-2 chr2 67474601 67474959 + 1.16667 NA Intergenic Intergenic 77447 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 321.001 chr2 119117522 119117893 + 1.16667 NA Intergenic Intergenic 41044 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 188.5-20 chr15 85456188 85456381 + 1.16667 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 75681 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 175.167-28 chr2 73114309 73114553 + 1.16667 NA Intergenic MER1A|DNA|hAT-Charlie -1483 NM_015470 26056 Hs.24557 NM_015470 ENSG00000135631 RAB11FIP5 GAF1|RIP11|pp75 RAB11 family interacting protein 5 protein-coding 218.667-3 chr1 166998424 166998698 + 1.16667 NA intron (NM_032858, intron 5 of 11) intron (NM_032858, intron 5 of 11) 9281 NM_032858 84944 Hs.651245 NM_032858 ENSG00000143194 MAEL CT128|SPATA35 maelstrom spermatogenic transposon silencer protein-coding 149.334-5 chr19 28073558 28073711 + 1.16667 NA Intergenic L1M3|LINE|L1 -279694 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 220.167-18 chr20 53439230 53439534 + 1.16667 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -113388 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 192.334-4 chr2 133263055 133263337 + 1.16667 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -2999 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 153.5-56 chr5 116643361 116643521 + 1.16667 NA Intergenic Intergenic -68618 NM_001300780 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 250-23 chr6 160673891 160674163 + 1.16667 NA Intergenic L1PREC2|LINE|L1 -9768 NM_005577 4018 Hs.520120 NM_005577 ENSG00000198670 LPA AK38|APOA|LP lipoprotein(a) protein-coding 227-15 chr2 231764176 231764473 + 1.16667 NA intron (NM_002601, intron 1 of 4) AluJo|SINE|Alu 16958 NM_002601 5147 Hs.516808 NM_002601 ENSG00000156973 PDE6D JBTS22|PDED phosphodiesterase 6D protein-coding 265.333-18 chr6 20505437 20505876 + 1.16667 NA Intergenic Intergenic -28801 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 212.667 chr1 21097467 21097756 + 1.16667 NA intron (NM_001198802, intron 2 of 34) L1MD|LINE|L1 13772 NM_003760 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 178.833-14 chr17 66467064 66467347 + 1.16667 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) -50351 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 379.167-2 chr2 80616302 80616773 + 1.16667 NA intron (NM_001282599, intron 11 of 11) intron (NM_001282599, intron 11 of 11) 303158 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 200.834-2 chr12 8996644 8997090 + 1.16667 NA intron (NM_005810, intron 3 of 4) intron (NM_005810, intron 3 of 4) 7242 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 212-39 chr8 77387482 77387862 + 1.16667 NA Intergenic Intergenic -63025 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 157-43 chr2 233882447 233882684 + 1.16667 NA Intergenic L1MEf|LINE|L1 -14156 NR_024322 151507 Hs.355809 NM_001166217 ENSG00000224287 MSL3P1 MSL3L2 MSL complex subunit 3 pseudogene 1 pseudo 290.167-3 chr11 128137024 128137294 + 1.16667 NA Intergenic MIRb|SINE|MIR -71607 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 179.167-4 chr1 199717906 199718277 + 1.16667 NA Intergenic Intergenic -309619 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 187.5-56 chr9 32047225 32047486 + 1.16667 NA Intergenic Intergenic -337248 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 286.334 chr1 102158275 102158579 + 1.16667 NA Intergenic L1ME2|LINE|L1 -161193 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 308.667-8 chr8 87433830 87434178 + 1.16667 NA Intergenic Intergenic 440011 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 371.501 chr11 85101952 85102368 + 1.16667 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -178739 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 210.167-12 chr16 87367521 87367828 + 1.16667 NA intron (NM_001282683, intron 2 of 9) intron (NM_001282683, intron 2 of 9) 16102 NM_024735 79791 Hs.567582 NM_024735 ENSG00000103264 FBXO31 FBX14|FBXO14|Fbx31|MRT45|pp2386 F-box protein 31 protein-coding 136-90 chr9 96620004 96620255 + 1.16667 NA promoter-TSS (NM_003671) promoter-TSS (NM_003671) -286 NM_003671 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 120.333-87 chr4 84261946 84262152 + 1.16667 NA intron (NR_125909, intron 4 of 8) L1PB4|LINE|L1 37120 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 124-50 chr2 75360322 75360532 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -160907 NM_015727 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 215.167-4 chr10 32330393 32330781 + 1.16667 NA intron (NM_001282391, intron 1 of 13) intron (NM_001282391, intron 1 of 13) 16571 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 124.667-123 chr8 89115422 89115575 + 1.16667 NA Intergenic L1MA9|LINE|L1 642213 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 335.167-6 chr20 46872098 46873191 + 1.16667 NA Intergenic Intergenic -21980 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 330.833-3 chr6 11264740 11265264 + 1.16667 NA intron (NM_001142393, intron 2 of 7) HAL1b|LINE|L1 -32320 NM_001271033 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 444.668 chr18 13896874 13897716 + 1.16667 NA intron (NM_001291911, intron 1 of 1) L1MA1|LINE|L1 18241 NM_000529 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 125.333-105 chr6 103586652 103586824 + 1.16667 NA Intergenic L1MA3|LINE|L1 1272808 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 408.5-2 chr11 11163607 11164275 + 1.16667 NA Intergenic Intergenic 189309 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 215.834-10 chr8 108182615 108182847 + 1.16667 NA Intergenic L1ME3|LINE|L1 65986 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 157.5-24 chr16 70520936 70521139 + 1.16667 NA intron (NM_015386, intron 1 of 18) AluJr4|SINE|Alu 2517 NM_001195139 25839 Hs.208680 NM_015386 ENSG00000103051 COG4 CDG2J|COD1|SWILS component of oligomeric golgi complex 4 protein-coding 172.667-41 chr2 179445538 179445910 + 1.16667 NA non-coding (NR_148055, exon 5 of 7) non-coding (NR_148055, exon 5 of 7) 116864 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 254.167-7 chr18 52130541 52130859 + 1.16667 NA Intergenic Intergenic -209497 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 117.833-9 chr11 5887956 5888138 + 1.16667 NA Intergenic LTR24C|LTR|ERV1 3754 NM_001005165 390081 Hs.553739 NM_001005165 ENSG00000180974 OR52E4 OR11-55 olfactory receptor family 52 subfamily E member 4 protein-coding 166.167-47 chr5 104582592 104582760 + 1.16667 NA Intergenic L1MC3|LINE|L1 -516798 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 145.5-32 chr2 15380720 15381133 + 1.16667 NA intron (NR_052013, intron 29 of 50) intron (NR_052013, intron 29 of 50) 180408 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 315.334-4 chr7 43400616 43401109 + 1.16667 NA intron (NM_001287059, intron 6 of 27) MLT1D|LTR|ERVL-MaLR 121680 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 162.334-2 chr10 47337690 47337936 + 1.16667 NA Intergenic L1MB8|LINE|L1 -10550 NM_002900 5949 Hs.591928 NM_002900 ENSG00000265203 RBP3 D10S64|D10S65|D10S66|IRBP|RBPI|RP66 retinol binding protein 3 protein-coding 198.667-16 chr12 45290162 45290473 + 1.16667 NA intron (NM_001204803, intron 2 of 20) intron (NM_001204803, intron 2 of 20) -2373 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 258.833-2 chr11 26891834 26892166 + 1.16667 NA Intergenic L1PA16|LINE|L1 -102112 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 134.167-73 chr7 22228724 22228900 + 1.16667 NA intron (NM_012294, intron 8 of 25) MIR|SINE|MIR -34002 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 362.167 chr10 19982754 19983287 + 1.16667 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 166588 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 206.167-13 chr20 19749210 19749467 + 1.16667 NA Intergenic L1M6|LINE|L1 -137183 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 143.334-4 chr2 161491008 161491195 + 1.16667 NA Intergenic MamSINE1|SINE|tRNA-RTE 16801 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 233.667-17 chr3 194934922 194935200 + 1.16667 NA Intergenic LTR8|LTR|ERV1 -159527 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 180.5-33 chr20 14929563 14929873 + 1.16667 NA promoter-TSS (NR_037841) promoter-TSS (NR_037841) -200 NR_072988 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 299.333-7 chr6 50581389 50581907 + 1.16667 NA Intergenic Intergenic -131896 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 194.834-5 chr22 28570973 28571218 + 1.16667 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 108770 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 150-87 chrX 83568966 83569227 + 1.16667 NA Intergenic L1PA8|LINE|L1 60806 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 224.667 chr1 68508854 68509319 + 1.16667 NA intron (NR_110671, intron 1 of 2) MER4-int|LTR|ERV1 -12004 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 362.168 chr21 20189876 20190200 + 1.16667 NA Intergenic Intergenic 68647 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 169.5-34 chr2 199264067 199264579 + 1.16667 NA Intergenic Intergenic 193616 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 324.167 chr11 101786463 101786793 + 1.16667 NA Intergenic Intergenic -128382 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 220.334-2 chr13 32439164 32439463 + 1.16667 NA intron (NM_001320836, intron 7 of 9) intron (NM_001320836, intron 7 of 9) -11183 NM_052818 90634 Hs.732118 NM_052818 ENSG00000139597 N4BP2L1 CG018 NEDD4 binding protein 2 like 1 protein-coding 207.333-35 chr4 154024388 154024688 + 1.16667 NA Intergenic FLAM_A|SINE|Alu -235455 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 187.334-6 chr3 178999028 178999307 + 1.16667 NA Intergenic MER34-int|LTR|ERV1 72642 NM_022470 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 309.334-3 chr6 142257355 142257700 + 1.16667 NA Intergenic Intergenic -44392 NM_001032394 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 275.667-7 chr14 94396697 94397022 + 1.16667 NA Intergenic MER41A|LTR|ERV1 -6167 NM_001127701 5265 Hs.525557 NM_000295 ENSG00000197249 SERPINA1 A1A|A1AT|AAT|PI|PI1|PRO2275|alpha1AT|nNIF serpin family A member 1 protein-coding 193.5-16 chr14 90649022 90649232 + 1.16667 NA TTS (NR_110134) TTS (NR_110134) 6498 NR_110134 101928909 Hs.662545 NR_110134 ENSG00000259163 LOC101928909 - uncharacterized LOC101928909 ncRNA 347.334-2 chr9 82823462 82824528 + 1.16667 NA Intergenic MIRc|SINE|MIR 239147 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 309.5-7 chr5 85521811 85522209 + 1.16667 NA Intergenic MIRb|SINE|MIR -760434 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 233-3 chr10 11626415 11626738 + 1.16667 NA Intergenic AluSx1|SINE|Alu -14787 NR_125732 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 158-40 chr5 36391172 36391654 + 1.16667 NA Intergenic Intergenic -89511 NM_001323276 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 225.834-3 chr5 5856918 5857119 + 1.16667 NA Intergenic Intergenic 434341 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 202.667-36 chr4 68090205 68090442 + 1.16667 NA intron (NM_207407, intron 3 of 9) intron (NM_207407, intron 3 of 9) -27026 NR_027094 401135 Hs.130270 NM_001014372 SYT14P1 CHR415SYT|SYT14L|SYTDEP synaptotagmin 14 pseudogene 1 pseudo 249.667-39 chr6 56541924 56542220 + 1.16667 NA intron (NM_001144770, intron 53 of 94) intron (NM_001144770, intron 53 of 94) 100817 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 144-4 chr10 44928615 44928807 + 1.16667 NA intron (NM_001123376, intron 2 of 4) (CCAT)n|Simple_repeat|Simple_repeat 17374 NM_001123376 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 164.667-41 chr20 54540050 54540309 + 1.16667 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 64586 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 259.834 chr11 98049084 98049480 + 1.16667 NA Intergenic Intergenic -971667 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 142.167-6 chr1 239289148 239289436 + 1.16667 NA Intergenic MamRTE1|LINE|RTE-BovB -97276 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 234.834-12 chr9 25330841 25331154 + 1.16667 NA Intergenic Intergenic 347861 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 186.834-10 chr8 139451076 139451262 + 1.16667 NA Intergenic L1MEi|LINE|L1 251954 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 373.5 chr10 55530068 55530661 + 1.16667 NA intron (NM_001354404, intron 2 of 34) LTR52|LTR|ERVL -68678 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 196.667-3 chr1 113771872 113772136 + 1.16667 NA intron (NR_130896, intron 5 of 7) intron (NR_130896, intron 5 of 7) -12116 NM_001323042 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 255.667-3 chr10 80791876 80792340 + 1.16667 NA Intergenic L1MC1|LINE|L1 142311 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 159.167-6 chr10 44636032 44636241 + 1.16667 NA Intergenic Tigger2|DNA|TcMar-Tigger -251039 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 146.334 chr13 88531713 88531841 + 1.16667 NA Intergenic L1MB8|LINE|L1 -9052 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 126.334-4 chr18 39397242 39397493 + 1.16667 NA intron (NR_024391, intron 3 of 3) L1ME1|LINE|L1 224808 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 193.167-16 chr13 97160495 97160862 + 1.16667 NA Intergenic Intergenic 18944 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 153.667-81 chr8 135159082 135159300 + 1.16667 NA Intergenic Intergenic -74940 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 170.833-6 chr11 5388185 5388543 + 1.16667 NA intron (NM_001005567, intron 1 of 4) L2c|LINE|L2 -1013 NM_001004756 390059 Hs.553731 NM_001004756 ENSG00000184698 OR51M1 HOR5'Beta7|OR11-40 olfactory receptor family 51 subfamily M member 1 protein-coding 202.167-10 chr12 26046008 26046282 + 1.16667 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) -6419 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 259.667-19 chr3 192243876 192244256 + 1.16667 NA intron (NR_046596, intron 1 of 4) L1ME4b|LINE|L1 5436 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 277-20 chr9 74798298 74798653 + 1.16667 NA intron (NM_017662, intron 17 of 38) intron (NM_017662, intron 17 of 38) 88872 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 248.333-2 chr1 147885965 147886420 + 1.16667 NA Intergenic MIRb|SINE|MIR -16603 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 115.833-26 chr16 7659236 7659382 + 1.16667 NA intron (NM_145893, intron 9 of 13) intron (NM_145893, intron 9 of 13) 326464 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 292.334 chr10 79554584 79555158 + 1.16667 NA TTS (NM_001320813) TTS (NM_001320813) 5000 NM_001320814 729238 Hs.523084 NM_001098668 ENSG00000185303 SFTPA2 COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-2A|SP-A|SPA2|SPAII surfactant protein A2 protein-coding 152.667-83 chr8 104539455 104539641 + 1.16667 NA intron (NM_013437, intron 1 of 6) intron (NM_013437, intron 1 of 6) 49476 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 203.167-12 chr11 112340425 112340785 + 1.16667 NA intron (NR_126004, intron 2 of 3) AluJo|SINE|Alu 69856 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 118.667-27 chr12 62369126 62369281 + 1.16667 NA intron (NR_147080, intron 6 of 19) intron (NR_147080, intron 6 of 19) -97623 NM_001278469 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 125.833-27 chr16 11585397 11585615 + 1.16667 NA intron (NR_024320, intron 1 of 3) intron (NR_024320, intron 1 of 3) 867 NM_004862 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 195.834-2 chr3 38271809 38272323 + 1.16667 NA intron (NM_004256, intron 1 of 9) MIRb|SINE|MIR 6254 NM_004256 9390 Hs.225941 NM_004256 ENSG00000172940 SLC22A13 OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3 solute carrier family 22 member 13 protein-coding 152.667-76 chr7 7476048 7476279 + 1.16667 NA intron (NM_001037763, intron 14 of 34) intron (NM_001037763, intron 14 of 34) 59710 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 276.333-2 chr1 233097495 233097937 + 1.16667 NA intron (NM_014801, intron 21 of 33) intron (NM_014801, intron 21 of 33) 146874 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 151-50 chr4 43231529 43231684 + 1.16667 NA Intergenic L1MC|LINE|L1 260937 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 145.5-41 chr20 40913459 40913617 + 1.16667 NA Intergenic Intergenic -67175 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 194.834-3 chr18 39090288 39090869 + 1.16667 NA Intergenic L1ME4a|LINE|L1 531597 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 341.334-3 chr2 208623293 208623644 + 1.16667 NA intron (NR_136588, intron 2 of 5) L1MEa|LINE|L1 80826 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 176.5-38 chr21 27445419 27445706 + 1.16667 NA Intergenic L2a|LINE|L2 -276817 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 136.333-32 chr15 70132918 70133162 + 1.16667 NA Intergenic Intergenic -35123 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 252.334-4 chr2 75928290 75928616 + 1.16667 NA Intergenic Intergenic -217538 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 116.5-6 chr10 25392853 25393000 + 1.16667 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -216650 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 152.334-5 chr8 137777103 137777356 + 1.16667 NA Intergenic Intergenic 306316 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 113.833-57 chr3 115618232 115618416 + 1.16667 NA Intergenic MLT1C|LTR|ERVL-MaLR -5186 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 160.167-30 chr2 226503999 226504254 + 1.16667 NA Intergenic L1MA5|LINE|L1 154667 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 164.5-52 chr6 156679263 156679559 + 1.16667 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -98444 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 176.5-14 chr12 21543007 21543198 + 1.16667 NA intron (NM_021957, intron 12 of 15) intron (NM_021957, intron 12 of 15) 15177 NR_135188 80763 Hs.130692 NM_030572 ENSG00000134548 SPX C12orf39 spexin hormone protein-coding 279.667-7 chr17 78601394 78601790 + 1.16667 NA Intergenic AluJb|SINE|Alu -24198 NM_173628 8632 Hs.375975 NM_003727 ENSG00000187775 DNAH17 DNAHL1|DNEL2 dynein axonemal heavy chain 17 protein-coding 451.334-3 chr7 43020737 43021283 + 1.16667 NA Intergenic Intergenic 88634 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 290.834-3 chr11 110697541 110697851 + 1.16667 NA intron (NM_001258416, intron 1 of 15) L1PB4|LINE|L1 14129 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 121-46 chr2 70540865 70541014 + 1.16667 NA intron (NM_003236, intron 1 of 5) L1ME4a|LINE|L1 12507 NM_001308159 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 302.333-7 chr3 99464626 99465153 + 1.16667 NA Intergenic L1MB5|LINE|L1 -173705 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 191.834-2 chr12 13673362 13673590 + 1.16667 NA intron (NM_000834, intron 4 of 12) L2c|LINE|L2 -296731 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 151.834 chr16 58556769 58557173 + 1.16667 NA exon (NM_001265612, exon 19 of 49) exon (NM_001265612, exon 19 of 49) 2960 NR_002980 677830 Hs.677515 NR_002980 ENSG00000281910 SNORA50A ACA50|SNORA50|SNORA76A small nucleolar RNA, H/ACA box 50A snoRNA 179.334-2 chr10 33085346 33085508 + 1.16667 NA intron (NR_160030, intron 1 of 2) intron (NR_160030, intron 1 of 2) 31380 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 122.833-88 chr8 125536105 125536273 + 1.16667 NA Intergenic MLT1I|LTR|ERVL-MaLR 103980 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 208.5-34 chr4 61045868 61046191 + 1.16667 NA Intergenic MLT1K-int|LTR|ERVL-MaLR -97627 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 116.5-42 chr2 191111326 191111452 + 1.16667 NA intron (NM_003151, intron 3 of 23) intron (NM_003151, intron 3 of 23) 39605 NM_003151 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 219-27 chr7 10346780 10347109 + 1.16667 NA Intergenic Intergenic -355732 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 222.167-32 chr6 103378990 103379291 + 1.16667 NA Intergenic Intergenic 1480406 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 212.333-27 chr4 102827323 102828040 + 1.16667 NA promoter-TSS (NM_181887) promoter-TSS (NM_181887) -128 NM_181887 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 209-2 chr1 99735735 99735966 + 1.16667 NA intron (NM_001013660, intron 7 of 16) intron (NM_001013660, intron 7 of 16) -22897 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 220.334-5 chr2 214374516 214374722 + 1.16667 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -36435 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 135.167-21 chr12 1271221 1271362 + 1.16667 NA intron (NR_027948, intron 14 of 19) L2a|LINE|L2 -229200 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 224.5-21 chr5 82741934 82742168 + 1.16667 NA Intergenic Intergenic -98104 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 128-89 chr8 13274653 13275048 + 1.16667 NA intron (NM_001348082, intron 5 of 16) intron (NM_001348082, intron 5 of 16) 1671 NM_001316668 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 184.334-3 chr4 51915175 51915644 + 1.16667 NA 3' UTR (NM_001287757, exon 12 of 12) 3' UTR (NM_001287757, exon 12 of 12) 71830 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 212.667-34 chr5 64873283 64873671 + 1.16667 NA intron (NM_005869, intron 10 of 13) L1M2|LINE|L1 104547 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 261-12 chr2 60914076 60914398 + 1.16667 NA intron (NM_002908, intron 4 of 10) intron (NM_002908, intron 4 of 10) 32663 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 234.667-2 chr1 98402991 98403528 + 1.16667 NA Intergenic Intergenic 192548 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 406.334 chr17 60451247 60451816 + 1.16667 NA intron (NM_006380, intron 12 of 12) AluSz|SINE|Alu 29042 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 166.833-14 chr14 32577442 32577735 + 1.16667 NA intron (NM_004274, intron 5 of 13) intron (NM_004274, intron 5 of 13) 248290 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 149.833-24 chr20 8912461 8912604 + 1.16667 NA Intergenic L1ME3A|LINE|L1 81347 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 212.167-8 chr2 36011495 36011817 + 1.16667 NA Intergenic LTR101_Mam|LTR|ERVL 343914 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 294.667-9 chr5 25483842 25484179 + 1.16667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 293057 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 212.667-5 chr1 169862357 169862662 + 1.16667 NA intron (NM_181093, intron 10 of 13) intron (NM_181093, intron 10 of 13) 31387 NM_020423 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 338.167-4 chr3 37104176 37104667 + 1.16667 NA intron (NM_006309, intron 14 of 27) intron (NM_006309, intron 14 of 27) 70161 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 188.833-41 chr8 136045706 136046015 + 1.16667 NA Intergenic L2c|LINE|L2 -484938 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 204-2 chr10 27922225 27922474 + 1.16667 NA intron (NM_001290021, intron 9 of 13) L1MC4|LINE|L1 59522 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 129.667-102 chr8 68990660 68990873 + 1.16667 NA intron (NR_039986, intron 2 of 4) L2c|LINE|L2 113424 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 181.333-5 chr10 52468526 52468860 + 1.16667 NA intron (NR_120641, intron 1 of 3) L1MB3|LINE|L1 1840 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 208.001-2 chr8 136259372 136260007 + 1.16667 NA Intergenic Intergenic -271109 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 142.334 chr12 103265435 103265608 + 1.16667 NA intron (NR_103526, intron 9 of 10) MIRc|SINE|MIR 113679 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 170.5-59 chr6 20671583 20671911 + 1.16667 NA intron (NM_017774, intron 5 of 15) FAM|SINE|Alu 137290 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 197.167-3 chr1 163380256 163380519 + 1.16667 NA Intergenic L1M5|LINE|L1 42804 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 237.5-27 chr7 53743463 53743736 + 1.16667 NA intron (NR_038371, intron 4 of 5) intron (NR_038371, intron 4 of 5) 68332 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 269.167-11 chr8 86506404 86506790 + 1.16667 NA intron (NM_001286719, intron 2 of 8) intron (NM_001286719, intron 2 of 8) 2089 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 192-36 chr5 67750200 67750520 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -42853 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 244.167-14 chr4 71903663 71904096 + 1.16667 NA Intergenic Intergenic -98359 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 123.333-19 chr10 71537312 71537486 + 1.16667 NA intron (NM_052836, intron 6 of 12) intron (NM_052836, intron 6 of 12) -25479 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 216.667-15 chr14 75061377 75061804 + 1.16667 NA intron (NR_126394, intron 1 of 1) intron (NR_126394, intron 1 of 1) 2434 NM_001302616 97 Hs.18573 NM_001107 ENSG00000119640 ACYP1 ACYPE acylphosphatase 1 protein-coding 170.667-6 chr10 77501997 77502238 + 1.16667 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 135691 NM_001322829 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 337.334-2 chr14 72238034 72238397 + 1.16667 NA intron (NM_001370288, intron 2 of 16) LTR1F2|LTR|ERV1 -278605 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 178.167-14 chr14 88742058 88742341 + 1.16667 NA intron (NM_183387, intron 4 of 42) intron (NM_183387, intron 4 of 42) 50754 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 309.834-3 chr2 69388444 69388940 + 1.16667 NA Intergenic Intergenic -1438 NM_001244710 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 171.834-9 chr9 27833726 27833906 + 1.16667 NA Intergenic L1PA10|LINE|L1 -259950 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 270.334-2 chr10 92686158 92686429 + 1.16667 NA Intergenic BC200|scRNA|scRNA -3662 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 163.5-6 chr10 20699390 20699607 + 1.16667 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 147528 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 204.667-46 chr8 101407426 101407748 + 1.16667 NA Intergenic Intergenic 38694 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 151-45 chr3 26504987 26505194 + 1.16667 NA Intergenic MLT2C1|LTR|ERVL -117716 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 231.167-11 chr2 23825529 23825913 + 1.16667 NA intron (NR_125717, intron 15 of 28) intron (NR_125717, intron 15 of 28) 101402 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 140.833-16 chr14 56558360 56558625 + 1.16667 NA Intergenic Intergenic -21306 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 193.5-23 chr2 48886403 48886719 + 1.16667 NA Intergenic L1PA14|LINE|L1 -130837 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 355.167-4 chr3 34815810 34816171 + 1.16667 NA Intergenic THE1D|LTR|ERVL-MaLR 578033 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 182-31 chr2 185998974 185999247 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 87207 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 190.834-7 chr5 94384676 94384913 + 1.16667 NA intron (NM_001145678, intron 19 of 20) intron (NM_001145678, intron 19 of 20) 233810 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 213.667-31 chr5 4341300 4341593 + 1.16667 NA Intergenic Intergenic -432035 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 181.5-63 chr9 29596574 29596831 + 1.16667 NA Intergenic Intergenic -383101 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 218-27 chr20 16080600 16080979 + 1.16667 NA Intergenic L1M2|LINE|L1 -94907 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 186.5-13 chr10 92082689 92083164 + 1.16667 NA intron (NM_001178137, intron 8 of 9) intron (NM_001178137, intron 8 of 9) 159156 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 281-15 chr3 186322454 186322730 + 1.16667 NA intron (NM_001346, intron 1 of 24) L1PA15|LINE|L1 39642 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 418.334 chr2 108442186 108442746 + 1.16667 NA Intergenic LOR1-int|LTR|ERV1 -6740 NM_181453 9648 Hs.436505 NM_181453 ENSG00000135968 GCC2 GCC185|RANBP2L4|REN53 GRIP and coiled-coil domain containing 2 protein-coding 184.167-18 chr14 58023169 58023429 + 1.16667 NA intron (NM_001001872, intron 5 of 7) Tigger1|DNA|TcMar-Tigger 128914 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 208.834-6 chr20 9500100 9500426 + 1.16667 NA Intergenic Intergenic -14095 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 128.667-62 chr2 33582824 33582992 + 1.16667 NA TTS (NM_001304538) TTS (NM_001304538) -13478 NR_146505 105374454 NR_146505 LOC105374454 - uncharacterized LOC105374454 ncRNA 234.501 chr10 80260563 80260787 + 1.16667 NA Intergenic Intergenic 12917 NR_136612 100130698 Hs.447456 NR_136612 LOC100130698 - uncharacterized LOC100130698 ncRNA 218.667-13 chr13 97525560 97525837 + 1.16667 NA Intergenic L3|LINE|CR1 91529 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 213.667-17 chr2 77040397 77040664 + 1.16667 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 54565 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 272.5-3 chr10 50552193 50552739 + 1.16667 NA intron (NM_147156, intron 2 of 10) MER103C|DNA|hAT-Charlie 71490 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 234.833-21 chr7 34500405 34500807 + 1.16667 NA intron (NR_033665, intron 2 of 3) MIRb|SINE|MIR -157612 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 274.333-8 chr2 124157896 124158309 + 1.16667 NA intron (NM_130773, intron 1 of 23) MLT1L|LTR|ERVL-MaLR 132815 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 294.834-3 chr21 26955924 26956203 + 1.16667 NA intron (NM_007038, intron 1 of 7) intron (NM_007038, intron 1 of 7) 2102 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 188.5-37 chr22 28218078 28218310 + 1.16667 NA intron (NM_001145418, intron 5 of 22) Charlie1a|DNA|hAT-Charlie -241675 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 233.167-8 chr14 24781153 24781672 + 1.16667 NA Intergenic LTR33C|LTR|ERVL -147222 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 145.167-12 chr10 111936581 111936769 + 1.16667 NA Intergenic LTR33A|LTR|ERVL 247090 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 173-33 chr2 182083546 182083839 + 1.16667 NA intron (NM_001261425, intron 4 of 5) L1PB3|LINE|L1 97839 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 303.334-3 chr17 48412180 48412634 + 1.16667 NA intron (NM_001075099, intron 1 of 12) intron (NM_001075099, intron 1 of 12) 17807 NM_003726 8631 Hs.316931 NM_003726 ENSG00000141293 SKAP1 HEL-S-81p|SCAP1|SKAP55 src kinase associated phosphoprotein 1 protein-coding 242.001 chr2 217540542 217540925 + 1.16667 NA intron (NR_026597, intron 2 of 12) L1MD3|LINE|L1 215860 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 222.667-14 chr16 84472692 84472944 + 1.16667 NA Intergenic L1MA4A|LINE|L1 -5457 NR_146503 105371374 Hs.610979 NR_146503 ENSG00000261286 ATP2C2-AS1 - ATP2C2 antisense RNA 1 ncRNA 297.333-11 chr8 52634707 52635290 + 1.16667 NA intron (NM_001083617, intron 19 of 23) intron (NM_001083617, intron 19 of 23) -69568 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 250.501 chr10 25936703 25937005 + 1.16667 NA intron (NM_001368265, intron 2 of 7) MIRb|SINE|MIR 2625 NM_001368265 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 172.167-48 chr9 34783350 34783672 + 1.16667 NA Intergenic MER110A|LTR|ERV1 -54023 NM_001141917 259308 Hs.522093 NM_001141917 ENSG00000205108 FAM205A C9orf144B family with sequence similarity 205 member A protein-coding 125.5-73 chr7 8034660 8034844 + 1.16667 NA intron (NM_138426, intron 3 of 7) L1PA17|LINE|L1 65956 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 186.334-5 chrX 88984780 88985059 + 1.16667 NA Intergenic MER4-int|LTR|ERV1 237694 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 273.667-10 chr18 74893677 74894262 + 1.16667 NA intron (NM_017757, intron 6 of 7) intron (NM_017757, intron 6 of 7) 263006 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 273-3 chr14 58260592 58261064 + 1.16667 NA intron (NM_152132, intron 5 of 10) intron (NM_152132, intron 5 of 10) 15985 NM_002788 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 206.834-5 chr14 87666640 87666874 + 1.16667 NA Intergenic Intergenic -11463 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 283-3 chr10 14770415 14770816 + 1.16667 NA intron (NM_031453, intron 1 of 4) MER104|DNA|TcMar-Tc2 4282 NM_001282695 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 192.333-28 chr21 20206643 20206926 + 1.16667 NA Intergenic Intergenic 51901 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 226.334-8 chr6 69717183 69717576 + 1.16667 NA intron (NM_001367272, intron 8 of 15) L1M5|LINE|L1 79087 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 165.667-72 chr8 79714513 79714774 + 1.16667 NA Intergenic MIRb|SINE|MIR 51832 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 116.167-54 chr4 101119548 101119671 + 1.16667 NA intron (NM_001130691, intron 2 of 12) intron (NM_001130691, intron 2 of 12) 121263 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 225.667-25 chr4 69089198 69089500 + 1.16667 NA intron (NM_001349568, intron 1 of 6) intron (NM_001349568, intron 1 of 6) -7125 NM_001074 7364 Hs.654424 NM_001074 ENSG00000171234 UGT2B7 UDPGT 2B7|UDPGT 2B9|UDPGT2B7|UDPGTH2|UDPGTh-2|UGT2B9 UDP glucuronosyltransferase family 2 member B7 protein-coding 221-36 chr8 104944098 104944500 + 1.16667 NA Intergenic L2a|LINE|L2 -355275 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 294.5-13 chrX 74959255 74959866 + 1.16667 NA Intergenic Intergenic -34108 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 252.334-3 chr18 78326916 78327484 + 1.16667 NA Intergenic Intergenic -333473 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 204.334 chr13 42540015 42540260 + 1.16667 NA Intergenic Intergenic -22599 NM_033012 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf TNF superfamily member 11 protein-coding 255.667 chr1 80545161 80545494 + 1.16667 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) 9572 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 207.167-31 chr8 117802600 117803081 + 1.16667 NA intron (NM_000127, intron 10 of 10) intron (NM_000127, intron 10 of 10) 118073 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 217.667-43 chr6 100749254 100749554 + 1.16667 NA intron (NM_006828, intron 10 of 41) intron (NM_006828, intron 10 of 41) 131925 NM_006828 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 236.334-9 chr3 75022992 75023435 + 1.16667 NA Intergenic L1PB4|LINE|L1 -191263 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 219.5-16 chr18 40483842 40484279 + 1.16667 NA Intergenic L1ME4a|LINE|L1 417774 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 198.667-56 chr8 125708410 125708845 + 1.16667 NA Intergenic Intergenic 242570 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 330.334 chr11 63921540 63921888 + 1.16667 NA Intergenic Intergenic -4550 NM_001363648 283248 Hs.98788 NM_173587 ENSG00000167771 RCOR2 - REST corepressor 2 protein-coding 177.167-38 chr5 128308169 128308409 + 1.16667 NA intron (NM_001999, intron 41 of 64) intron (NM_001999, intron 41 of 64) 224523 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 241.834-12 chr6 10947752 10948002 + 1.16667 NA intron (NM_001040274, intron 23 of 29) L1MEd|LINE|L1 6212 NR_125851 101928191 Hs.638939 NR_125851 LOC101928191 - uncharacterized LOC101928191 ncRNA 154-74 chr7 111417013 111417421 + 1.16667 NA intron (NM_032549, intron 3 of 5) Arthur1B|DNA|hAT-Tip100 145074 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 238.667-35 chrX 45252088 45252359 + 1.16667 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -51347 NM_176819 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 173.333-58 chr6 42006761 42007178 + 1.16667 NA intron (NM_001136017, intron 1 of 4) intron (NM_001136017, intron 1 of 4) 41925 NM_001136126 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 249.667-40 chr6 163934031 163934264 + 1.16667 NA Intergenic L1ME3G|LINE|L1 -262663 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 232.5-12 chr14 84964826 84965167 + 1.16667 NA Intergenic Intergenic -306936 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 219.501 chr4 131151212 131151446 + 1.16667 NA Intergenic Intergenic -613509 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 203.5-15 chr14 59541762 59542093 + 1.16667 NA intron (NM_001164399, intron 10 of 19) intron (NM_001164399, intron 10 of 19) 34885 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 222-14 chr15 57573096 57573509 + 1.16667 NA Intergenic Intergenic -18602 NR_104371 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 266.501-2 chr12 13840516 13840788 + 1.16667 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 139704 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 222.834-7 chr8 87123014 87123255 + 1.16667 NA intron (NM_173538, intron 4 of 10) L1MA7|LINE|L1 256719 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 128.667-95 chr5 60032371 60032522 + 1.16667 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) -138720 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 325.834-4 chr6 144846591 144846943 + 1.16667 NA intron (NM_007124, intron 72 of 73) intron (NM_007124, intron 72 of 73) 441112 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 246.667-6 chr10 100760440 100760834 + 1.16667 NA intron (NM_003988, intron 3 of 10) intron (NM_003988, intron 3 of 10) 14926 NM_003987 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 291.667-9 chr12 59241872 59242206 + 1.16667 NA Intergenic Intergenic -321501 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 234.667-14 chr14 42063270 42063534 + 1.16667 NA Intergenic Intergenic 456546 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 155-8 chr1 239304401 239304542 + 1.16667 NA Intergenic Intergenic -82097 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 148.334-10 chr8 49406628 49406931 + 1.16667 NA Intergenic Ricksha_0|DNA|MULE-MuDR 105401 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 226.167-26 chr7 107783237 107783592 + 1.16667 NA intron (NM_000111, intron 8 of 20) intron (NM_000111, intron 8 of 20) 19819 NM_000111 1811 Hs.1650 NM_000111 ENSG00000091138 SLC26A3 CLD|DRA solute carrier family 26 member 3 protein-coding 324.167-4 chr6 55947127 55947825 + 1.16667 NA Intergenic L1M5|LINE|L1 -71886 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 336 chr1 167737046 167737486 + 1.16667 NA intron (NM_024569, intron 1 of 4) intron (NM_024569, intron 1 of 4) 15284 NM_001146191 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 295.834-4 chr22 25594961 25595291 + 1.16667 NA intron (NM_001362778, intron 1 of 19) L1P4|LINE|L1 30451 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 296.834-4 chr4 128656218 128656582 + 1.16667 NA Intergenic Intergenic -153300 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 236.834-3 chr11 74420310 74420686 + 1.16667 NA Intergenic Intergenic 21261 NR_039710 100616215 NR_039710 ENSG00000264402 MIR548AL - microRNA 548al ncRNA 248.5-2 chr10 92061595 92061873 + 1.16667 NA intron (NM_001178137, intron 9 of 9) L1MA1|LINE|L1 137964 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 275.167-9 chr22 45106349 45106681 + 1.16667 NA Intergenic L2b|LINE|L2 46069 NR_038957 100506714 Hs.189902 NR_038956 NUP50-DT NUP50-AS1 NUP50 divergent transcript ncRNA 225-12 chr13 35398979 35399318 + 1.16667 NA intron (NM_015678, intron 38 of 57) Tigger1|DNA|TcMar-Tigger 77541 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 219.167-17 chr20 59081269 59081537 + 1.16667 NA Intergenic L1MB5|LINE|L1 -38557 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 140.334-6 chr2 64790643 64790768 + 1.16667 NA Intergenic Intergenic 72926 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 185.667-2 chr1 115449997 115450358 + 1.16667 NA Intergenic Intergenic -111941 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 118.834-10 chr3 118868911 118869055 + 1.16667 NA Intergenic LTR85b|LTR|Gypsy? -58150 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 119-101 chr8 134589361 134589473 + 1.16667 NA intron (NM_020863, intron 8 of 15) intron (NM_020863, intron 8 of 15) -8654 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 179.333-29 chr2 103398645 103398928 + 1.16667 NA Intergenic Intergenic -414357 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 309.834-2 chr2 65307187 65307469 + 1.16667 NA Intergenic AluSz|SINE|Alu 59450 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 126.5-21 chr13 64296246 64296434 + 1.16667 NA Intergenic Intergenic -220329 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 181.5-20 chr17 63184126 63184447 + 1.16667 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 218051 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 150.667-99 chr9 88920218 88920357 + 1.16667 NA Intergenic Intergenic -70576 NM_001001938 286223 Hs.585118 NM_001001938 ENSG00000213694 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 254.667-3 chr10 65642386 65642880 + 1.16667 NA intron (NR_120647, intron 3 of 5) intron (NR_120647, intron 3 of 5) 71208 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 189-23 chr21 32035613 32035840 + 1.16667 NA Intergenic LTR57|LTR|ERVL 50569 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 140.667-26 chr14 63677391 63677617 + 1.16667 NA Intergenic LTR47A2|LTR|ERVL -35633 NM_080666 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 330.001 chr9 9114309 9114616 + 1.16667 NA intron (NM_002839, intron 10 of 45) intron (NM_002839, intron 10 of 45) 256444 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 211.334 chr12 7340897 7341124 + 1.16667 NA Intergenic Intergenic 36678 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 170-10 chr12 10062797 10063059 + 1.16667 NA intron (NM_207345, intron 6 of 8) intron (NM_207345, intron 6 of 8) 32246 NM_207345 283420 Hs.531189 NM_207345 ENSG00000197992 CLEC9A CD370|DNGR-1|DNGR1|UNQ9341 C-type lectin domain containing 9A protein-coding 282.501-2 chr18 10284383 10284776 + 1.16667 NA Intergenic Intergenic 129791 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 328-11 chr7 26913416 26913906 + 1.16667 NA Intergenic Intergenic -49071 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 190.167-48 chr8 128239731 128240023 + 1.16667 NA Intergenic LTR33B|LTR|ERVL 89761 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 311.834-2 chr4 124292569 124292865 + 1.16667 NA Intergenic Intergenic 265717 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 141-55 chr21 23514852 23514989 + 1.16667 NA Intergenic Charlie7|DNA|hAT-Charlie -130085 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 245.5-30 chr8 124861274 124861682 + 1.16667 NA Intergenic Intergenic -39420 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 313.667-15 chr6 148001645 148002273 + 1.16667 NA Intergenic Intergenic -270369 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 181.167 chr1 82373865 82374152 + 1.16667 NA Intergenic L1ME2|LINE|L1 -529175 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 216.334-5 chr4 64418429 64418690 + 1.16667 NA Intergenic Intergenic -9099 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 322.167-2 chr11 83332037 83332387 + 1.16667 NA Intergenic Intergenic -45805 NM_001286119 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 118.667-60 chr2 108935849 108935960 + 1.16667 NA intron (NM_022336, intron 1 of 11) intron (NM_022336, intron 1 of 11) 53316 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 222.167-30 chr5 131952822 131953166 + 1.16667 NA 3' UTR (NM_001205247, exon 21 of 21) 3' UTR (NM_001205247, exon 21 of 21) -7331 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 241.667-13 chr19 17191446 17191698 + 1.16667 NA intron (NM_001130065, intron 20 of 39) intron (NM_001130065, intron 20 of 39) -23785 NM_018467 55850 Hs.16187 NM_018467 ENSG00000053501 USE1 D12|MDS032|P31|SLT1 unconventional SNARE in the ER 1 protein-coding 251.334-2 chr16 10831211 10831490 + 1.16667 NA Intergenic AluJr|SINE|Alu -12556 NM_001318873 780776 Hs.371576 NM_001079512 ENSG00000166676 TVP23A FAM18A|YDR084C trans-golgi network vesicle protein 23 homolog A protein-coding 190.167-45 chr7 98990750 98991034 + 1.16667 NA intron (NM_003496, intron 62 of 70) intron (NM_003496, intron 62 of 70) -22273 NR_110102 101927550 Hs.636663 NR_110102 LOC101927550 - uncharacterized LOC101927550 ncRNA 332.167-7 chr5 105192525 105192895 + 1.16667 NA Intergenic Intergenic 93236 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 261.167-9 chr2 46754696 46755060 + 1.16667 NA intron (NM_144949, intron 1 of 1) intron (NM_144949, intron 1 of 1) 55583 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 152.833-43 chr3 35176415 35176676 + 1.16667 NA intron (NR_110817, intron 2 of 3) L1MA10|LINE|L1 217478 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 207.667-15 chr16 59449997 59450249 + 1.16667 NA Intergenic L1MB1|LINE|L1 305068 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 143.667-4 chr1 77127541 77127700 + 1.16667 NA intron (NM_005482, intron 9 of 10) intron (NM_005482, intron 9 of 10) 67477 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 331.667-5 chr4 93404305 93404781 + 1.16667 NA intron (NM_001286838, intron 8 of 14) MIR|SINE|MIR -424210 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 182.167-25 chr2 127232477 127232836 + 1.16667 NA Intergenic Intergenic -12357 NM_001367502 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 304.5 chr1 161283471 161283873 + 1.16667 NA exon (NM_001102566, exon 2 of 3) exon (NM_001102566, exon 2 of 3) 24927 NM_001102566 654790 Hs.433150 NM_001102566 ENSG00000248485 PCP4L1 IQM1 Purkinje cell protein 4 like 1 protein-coding 120.667-69 chr20 34768501 34768657 + 1.16667 NA exon (NM_014071, exon 5 of 15) exon (NM_014071, exon 5 of 15) 13825 NM_001242539 23054 Hs.368971 NM_014071 ENSG00000198646 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 344.167-5 chr5 131083787 131084169 + 1.16667 NA Intergenic L1MA8|LINE|L1 81278 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 276.5-13 chr4 106847558 106847902 + 1.16667 NA Intergenic Intergenic 188583 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 226.667-18 chr3 27388179 27388534 + 1.16667 NA intron (NM_001258380, intron 21 of 23) L1M5|LINE|L1 -18896 NM_152534 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 261.5-8 chr13 38949568 38949901 + 1.16667 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 41097 NM_145286 161003 Hs.327794 NM_145286 ENSG00000133115 STOML3 Epb7.2l|SRO stomatin like 3 protein-coding 186.5-12 chr10 57863141 57863347 + 1.16667 NA Intergenic L1MA9|LINE|L1 404650 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 179.5-26 chr5 101759060 101759414 + 1.16667 NA Intergenic HERVL18-int|LTR|ERVL 537047 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 114.667-17 chr12 2029425 2029523 + 1.16667 NA Intergenic L1MB5|LINE|L1 -18878 NR_046768 100874369 Hs.208723 NR_046768 ENSG00000256257 CACNA1C-IT2 - CACNA1C intronic transcript 2 ncRNA 169.833-5 chr10 12155032 12155288 + 1.16667 NA intron (NM_001142627, intron 6 of 11) intron (NM_001142627, intron 6 of 11) -24344 NR_039699 100616488 NR_039699 ENSG00000265653 MIR548AK - microRNA 548ak ncRNA 317.5-14 chr8 36153576 36154063 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -443499 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 286.5-12 chr4 30815523 30815891 + 1.16667 NA intron (NM_032457, intron 1 of 2) MER50|LTR|ERV1 95338 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 188.334-7 chr2 207562857 207563196 + 1.16667 NA intron (NM_001371426, intron 4 of 8) L2a|LINE|L2 3904 NM_001371428 237.5-18 chr3 131281233 131281631 + 1.16667 NA intron (NM_001353043, intron 17 of 17) L1MC5|LINE|L1 -80413 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 303.334-7 chr4 38027008 38027320 + 1.16667 NA intron (NM_001253912, intron 6 of 20) MIRb|SINE|MIR 66766 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 234.167-11 chr2 211663913 211664193 + 1.16667 NA intron (NM_001042599, intron 15 of 26) intron (NM_001042599, intron 15 of 26) 762307 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 148.667-83 chr9 28354331 28354480 + 1.16667 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 364900 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 141.667-30 chr15 35832742 35832919 + 1.16667 NA intron (NR_038251, intron 2 of 2) CR1-3_Croc|LINE|CR1 -94026 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 175.5-50 chr5 89774651 89774967 + 1.16667 NA Intergenic Intergenic 241911 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 162-3 chr1 45335887 45336097 + 1.16667 NA intron (NM_012222, intron 1 of 15) LTR29|LTR|ERV1 3965 NM_001293195 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 287-8 chr3 116847874 116848142 + 1.16667 NA Intergenic Intergenic 2359 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 291.334-7 chr3 36040570 36040957 + 1.16667 NA Intergenic L1MA2|LINE|L1 296287 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 284.5 chr1 14497618 14497892 + 1.16667 NA Intergenic Intergenic -77782 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 295.667-6 chr21 14210712 14211093 + 1.16667 NA promoter-TSS (NM_001302998) promoter-TSS (NM_001302998) -11 NM_001303000 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 393.167 chr3 113642878 113643409 + 1.16667 NA Intergenic L1MEg|LINE|L1 48267 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 164-75 chr8 110319675 110320041 + 1.16667 NA Intergenic Intergenic -344087 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 243.834-6 chr5 163181384 163181612 + 1.16667 NA Intergenic Intergenic -256073 NM_001364023 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 190.833-35 chr5 152182378 152182748 + 1.16667 NA intron (NR_109876, intron 1 of 2) L2a|LINE|L2 222716 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 143.334-2 chr19 53220720 53220944 + 1.16667 NA Intergenic Tigger3c|DNA|TcMar-Tigger 7884 NR_073396 390963 Hs.444446 NM_001001675 ZNF818P ZNF818 zinc finger protein 818, pseudogene pseudo 241.834-5 chr2 167510894 167511270 + 1.16667 NA Intergenic Intergenic -307590 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 392.834 chr15 100273939 100274472 + 1.16667 NA intron (NM_139057, intron 4 of 21) L1MB3|LINE|L1 67770 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 171.167-49 chr5 75906537 75906753 + 1.16667 NA Intergenic Intergenic -176738 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 287-9 chr7 17255039 17255544 + 1.16667 NA Intergenic L2a|LINE|L2 -43361 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 118.334-7 chr9 82197009 82197173 + 1.16667 NA Intergenic Intergenic 208319 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 244.167-4 chr12 3282196 3282558 + 1.16667 NA intron (NM_001168320, intron 7 of 7) Tigger19a|DNA|TcMar-Tigger 83745 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 131-29 chr19 39989460 39989660 + 1.16667 NA Intergenic L1M3|LINE|L1 -7500 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 216.667-41 chr6 110620217 110620439 + 1.16667 NA intron (NM_001300963, intron 13 of 13) intron (NM_001300963, intron 13 of 13) -143715 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 346.5-5 chr2 196038062 196038671 + 1.16667 NA intron (NM_018897, intron 5 of 64) L1MA5|LINE|L1 30471 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 294.5-8 chr22 24710609 24711239 + 1.16667 NA Intergenic L1M4|LINE|L1 -51777 NR_024593 646074 Hs.531306 NM_001025230 POM121L10P - POM121 transmembrane nucleoporin like 10, pseudogene pseudo 214.5-31 chr5 175378716 175379031 + 1.16667 NA Intergenic MIRb|SINE|MIR 65309 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 271-11 chr5 62061245 62061571 + 1.16667 NA Intergenic Intergenic -244754 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 215.667 chr1 104731177 104731374 + 1.16667 NA Intergenic L1MA4A|LINE|L1 658252 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 231.167-5 chr10 85524410 85524706 + 1.16667 NA Intergenic LTR51|LTR|ERV1 -53173 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 153-52 chr8 29823300 29823511 + 1.16667 NA intron (NR_125817, intron 1 of 2) intron (NR_125817, intron 1 of 2) 5099 NR_125817 101929470 Hs.204721 NR_125817 ENSG00000248964 LOC101929470 - uncharacterized LOC101929470 ncRNA 308.667-12 chr8 141250585 141250868 + 1.16667 NA intron (NM_001286646, intron 1 of 7) MER47A|DNA|TcMar-Tigger -3841 NR_161376 105375787 Hs.567685 NR_161376 LOC105375787 - uncharacterized LOC105375787 ncRNA 207.334 chr1 205042126 205042397 + 1.16667 NA promoter-TSS (NM_005076) promoter-TSS (NM_005076) -688 NM_001346083 6900 Hs.519220 NM_005076 ENSG00000184144 CNTN2 AXT|FAME5|TAG-1|TAX|TAX1 contactin 2 protein-coding 173-55 chr8 48809712 48809970 + 1.16667 NA Intergenic L1MDa|LINE|L1 -74530 NM_001142857 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 242.667-28 chr8 126667869 126668645 + 1.16667 NA Intergenic Intergenic -109779 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 565.834 chr19 28786447 28787599 + 1.16667 NA Intergenic MIRb|SINE|MIR -59329 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 136.333-27 chr14 43322547 43322738 + 1.16667 NA Intergenic L1ME1|LINE|L1 1184641 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 194.667-31 chr2 180204113 180204302 + 1.16667 NA Intergenic Intergenic -196910 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 240.501-2 chr18 6873686 6873919 + 1.16667 NA intron (NM_001010000, intron 8 of 16) intron (NM_001010000, intron 8 of 16) 39317 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 222.5-33 chr8 138039990 138040441 + 1.16667 NA intron (NR_161374, intron 2 of 7) MER6A|DNA|TcMar-Tigger 43330 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 212.667-9 chr10 34271339 34271852 + 1.16667 NA intron (NM_001184789, intron 19 of 22) L1MD1|LINE|L1 -498915 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 215.834-2 chr2 114634475 114634772 + 1.16667 NA intron (NM_001321908, intron 2 of 25) MIRb|SINE|MIR 173046 NM_001321905 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 299-4 chr12 17368391 17368672 + 1.16667 NA Intergenic Intergenic 220547 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 138.334-3 chr16 8690814 8690971 + 1.16667 NA intron (NM_020686, intron 1 of 15) intron (NM_020686, intron 1 of 15) 16275 NM_020686 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 122.167-54 chr5 35343530 35343661 + 1.16667 NA Intergenic THE1B|LTR|ERVL-MaLR -113108 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 145.834-3 chr18 75340681 75341017 + 1.16667 NA Intergenic Intergenic 86854 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 268.333-10 chr3 116429890 116430385 + 1.16667 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) 15350 NM_001318915 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 297.333-6 chr3 194165133 194165575 + 1.16667 NA Intergenic L1ME1|LINE|L1 29206 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 192.167-8 chr11 77764748 77765079 + 1.16667 NA intron (NM_016578, intron 1 of 15) intron (NM_016578, intron 1 of 15) 55921 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 230-11 chr2 64546283 64546587 + 1.16667 NA intron (NM_001002243, intron 1 of 8) intron (NM_001002243, intron 1 of 8) 20922 NR_039633 100616419 NR_039633 ENSG00000283204 MIR4434 - microRNA 4434 ncRNA 232-31 chr8 8272271 8272498 + 1.16667 NA Intergenic Intergenic 43814 NR_024363 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 173.167-16 chr15 61994840 61995094 + 1.16667 NA intron (NM_001018088, intron 16 of 81) intron (NM_001018088, intron 16 of 81) 65480 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 149.334-4 chr14 53963737 53963934 + 1.16667 NA Intergenic CpG -6944 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 164.334-3 chr17 61055570 61055774 + 1.16667 NA intron (NM_001330413, intron 20 of 25) intron (NM_001330413, intron 20 of 25) 312032 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 273.5-8 chr13 43858896 43859273 + 1.16667 NA intron (NM_144974, intron 5 of 6) intron (NM_144974, intron 5 of 6) -20094 NM_001128303 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 273.501 chr14 61718913 61719166 + 1.16667 NA intron (NR_144368, intron 1 of 2) intron (NR_144368, intron 1 of 2) 21417 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 233.167-25 chr4 69433570 69433918 + 1.16667 NA Intergenic L1M4b|LINE|L1 62161 NM_001297615 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 239.5-3 chr1 184166404 184166663 + 1.16667 NA Intergenic Intergenic 114803 NM_001300764 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 144-45 chr3 32112773 32112988 + 1.16667 NA intron (NM_015141, intron 1 of 7) MIRb|SINE|MIR 6369 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 210.501 chr12 27292138 27292344 + 1.16667 NA intron (NM_015000, intron 1 of 13) intron (NM_015000, intron 1 of 13) -40595 NM_001248002 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 258.001 chr4 112932726 112933123 + 1.16667 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) 71937 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 146.5-67 chr5 19532128 19532354 + 1.16667 NA intron (NM_001349559, intron 9 of 12) intron (NM_001349559, intron 9 of 12) 354031 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 267-12 chr7 2324480 2324952 + 1.16667 NA Intergenic Intergenic -10275 NM_013321 29886 Hs.584900 NM_013321 ENSG00000106266 SNX8 Mvp1 sorting nexin 8 protein-coding 158.667-12 chr10 73300397 73300652 + 1.16667 NA intron (NM_001367801, intron 13 of 27) L1ME4b|LINE|L1 47783 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 168-20 chr14 59028147 59028397 + 1.16667 NA Intergenic Intergenic -160395 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 213.5-30 chr5 76115561 76115809 + 1.16667 NA intron (NM_014979, intron 1 of 12) intron (NM_014979, intron 1 of 12) 32302 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 165.5-35 chr2 104062755 104062980 + 1.16667 NA Intergenic L1MB4|LINE|L1 345465 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 223.834-9 chr9 6960126 6960418 + 1.16667 NA intron (NR_148680, intron 8 of 21) intron (NR_148680, intron 8 of 21) 202922 NM_001354000 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 181.334-6 chr8 53976701 53976968 + 1.16667 NA intron (NM_201437, intron 7 of 8) intron (NM_201437, intron 7 of 8) 45614 NR_109902 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 269.167-4 chr12 40095270 40095886 + 1.16667 NA intron (NM_052885, intron 1 of 9) intron (NM_052885, intron 1 of 9) 10503 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 170.667-38 chr3 1382889 1383183 + 1.16667 NA exon (NM_001349356, exon 17 of 22) exon (NM_001349356, exon 17 of 22) 290012 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 361.167-2 chr11 31434276 31434665 + 1.16667 NA intron (NM_001304274, intron 4 of 5) intron (NM_001304274, intron 4 of 5) 64610 NM_181706 120526 Hs.187269 NM_181706 ENSG00000170946 DNAJC24 DPH4|JJJ3|ZCSL3 DnaJ heat shock protein family (Hsp40) member C24 protein-coding 238.667-14 chr18 12805965 12806270 + 1.16667 NA intron (NM_080423, intron 7 of 8) L1MA6|LINE|L1 34845 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 389.834-3 chr2 33189066 33189731 + 1.16667 NA intron (NM_206943, intron 7 of 33) AluSz|SINE|Alu 54801 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 171.667-36 chr17 72162038 72162380 + 1.16667 NA Intergenic Intergenic 41189 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 318.834-3 chr14 44450590 44451037 + 1.16667 NA Intergenic Intergenic 56470 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 379.167 chr18 57569134 57569498 + 1.16667 NA intron (NM_001371095, intron 5 of 11) intron (NM_001371095, intron 5 of 11) 17386 NM_000140 2235 Hs.365365 NM_000140 ENSG00000066926 FECH EPP|EPP1|FCE ferrochelatase protein-coding 239.167-7 chr17 57934620 57934854 + 1.16667 NA intron (NM_001271875, intron 1 of 10) AluSx|SINE|Alu 20675 NM_001271875 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 226.334-6 chr3 189679198 189679472 + 1.16667 NA intron (NM_003722, intron 1 of 13) L1MA9|LINE|L1 47946 NM_001114978 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 179.833-11 chr14 74997943 74998242 + 1.16667 NA Intergenic AluJb|SINE|Alu -4829 NM_014239 8892 Hs.409137 NM_014239 ENSG00000119718 EIF2B2 EIF-2Bbeta|EIF2B eukaryotic translation initiation factor 2B subunit beta protein-coding 144.334-8 chr7 19075850 19076090 + 1.16667 NA Intergenic L1MA4A|LINE|L1 41666 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 127.834-3 chr2 108841056 108841201 + 1.16667 NA intron (NM_144978, intron 11 of 14) AluSx1|SINE|Alu 54357 NR_147236 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 198.834-10 chr6 74089938 74090132 + 1.16667 NA intron (NR_110856, intron 1 of 3) MIRc|SINE|MIR 20584 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 255-18 chr5 37431699 37432149 + 1.16667 NA intron (NM_001345998, intron 5 of 17) L1MB2|LINE|L1 52606 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 154.5-43 chr21 22939757 22940011 + 1.16667 NA Intergenic Intergenic -139400 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 306.667-9 chr8 83616687 83617048 + 1.16667 NA Intergenic Intergenic 213109 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 278.334 chr1 50972787 50973127 + 1.16667 NA intron (NM_078626, intron 1 of 1) intron (NM_078626, intron 1 of 1) 2712 NM_078626 1031 Hs.525324 NM_001262 ENSG00000123080 CDKN2C INK4C|p18|p18-INK4C cyclin dependent kinase inhibitor 2C protein-coding 170.334-7 chr3 153178433 153178638 + 1.16667 NA Intergenic Intergenic 16309 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 262.167-13 chr22 19834737 19835244 + 1.16667 NA intron (NM_053004, intron 2 of 7) L1MEf|LINE|L1 19884 NM_024627 79680 Hs.105642 NM_024627 ENSG00000215012 RTL10 BOP|C22orf29 retrotransposon Gag like 10 protein-coding 140.167-33 chr2 52644139 52644318 + 1.16667 NA Intergenic MER70A|LTR|ERVL 58387 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 174.167-41 chr8 124239140 124239318 + 1.16667 NA intron (NR_125420, intron 1 of 2) (AAAG)n|Simple_repeat|Simple_repeat 8169 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 152.167-73 chr8 87823080 87823289 + 1.16667 NA Intergenic MER92-int|LTR|ERV1 50831 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 142.334-3 chr20 42429574 42430031 + 1.16667 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -255681 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 219-2 chr10 86382072 86382428 + 1.16667 NA Intergenic L1MEg|LINE|L1 -15455 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 234.167-6 chr16 6799230 6799509 + 1.16667 NA intron (NM_001142334, intron 1 of 13) MADE1|DNA|TcMar-Mariner 25560 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 153.167-27 chr2 139566001 139566289 + 1.16667 NA Intergenic L1MCb|LINE|L1 668821 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 206-28 chr5 14981606 14981818 + 1.16667 NA Intergenic MER4D0|LTR|ERV1 -109934 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 228-30 chr6 149728768 149729128 + 1.16667 NA intron (NM_198887, intron 7 of 7) L2a|LINE|L2 -10692 NM_001270519 9113 Hs.549084 NM_004690 ENSG00000131023 LATS1 WARTS|wts large tumor suppressor kinase 1 protein-coding 234.333-9 chr12 126512047 126512539 + 1.16667 NA Intergenic Intergenic -62966 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 204.667-36 chr4 55823547 55823873 + 1.16667 NA intron (NM_001351574, intron 1 of 2) (TGTT)n|Simple_repeat|Simple_repeat 3707 NM_001351574 644145 Hs.570825 NM_001351574 ENSG00000250821 EXOC1L - exocyst complex component 1 like protein-coding 285.667-5 chr3 184881323 184881610 + 1.16667 NA intron (NM_001009921, intron 20 of 46) L1MD1|LINE|L1 68959 NR_146116 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 205.167-29 chr4 45451332 45451618 + 1.16667 NA Intergenic AluSc8|SINE|Alu 672579 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 188.167-47 chr9 31362320 31362607 + 1.16667 NA Intergenic L1M5|LINE|L1 19027 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 229.667-12 chr18 11458818 11459145 + 1.16667 NA intron (NR_146901, intron 2 of 3) intron (NR_146901, intron 2 of 3) 4503 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 179.5-40 chr8 117901671 117901835 + 1.16667 NA intron (NM_000127, intron 1 of 10) AluJb|SINE|Alu 19160 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 181.167-27 chr7 79819111 79819273 + 1.16667 NA Intergenic Intergenic -315639 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 210-34 chr8 54217735 54217993 + 1.16667 NA Intergenic MIRb|SINE|MIR 82623 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 173.167-20 chr2 57388746 57388932 + 1.16667 NA Intergenic L1MA1|LINE|L1 -518812 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 209.501 chr2 31536716 31536922 + 1.16667 NA intron (NM_000348, intron 1 of 4) intron (NM_000348, intron 1 of 4) 44119 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 196.334-3 chr11 57142013 57142273 + 1.16667 NA Intergenic Intergenic -39810 NM_001005210 219527 Hs.199853 NM_001005210 ENSG00000183908 LRRC55 - leucine rich repeat containing 55 protein-coding 208.667-48 chrX 43787249 43787593 + 1.16667 NA intron (NM_000898, intron 8 of 14) intron (NM_000898, intron 8 of 14) 95029 NM_000898 4129 Hs.654473 NM_000898 ENSG00000069535 MAOB - monoamine oxidase B protein-coding 215.833-15 chr21 16106445 16106822 + 1.16667 NA intron (NR_111005, intron 1 of 6) intron (NR_111005, intron 1 of 6) 35519 NR_111004 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 205.334-3 chr2 16044849 16045249 + 1.16667 NA Intergenic Intergenic -5378 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 309.334-2 chr4 46068740 46069351 + 1.16667 NA intron (NM_173536, intron 3 of 8) intron (NM_173536, intron 3 of 8) 55009 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 166.667-41 chr4 175703883 175704133 + 1.16667 NA intron (NM_201592, intron 1 of 6) LTR83|LTR|ERVL 83668 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 194-23 chr15 47672629 47672817 + 1.16667 NA intron (NM_001198999, intron 4 of 19) intron (NM_001198999, intron 4 of 19) -44782 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 279.667-3 chr13 112080567 112080887 + 1.16667 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) 13578 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 342.167 chr14 68374133 68374589 + 1.16667 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 254426 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 168.833-8 chr10 104014391 104014677 + 1.16667 NA intron (NM_014720, intron 13 of 18) intron (NM_014720, intron 13 of 18) 33652 NR_030760 100126326 NR_030760 ENSG00000283788 MIR936 MIRN936|hsa-mir-936 microRNA 936 ncRNA 431.834 chr3 119494172 119495030 + 1.16667 NA non-coding (NR_024265, exon 11 of 11) non-coding (NR_024265, exon 11 of 11) -3946 NM_016589 51300 Hs.477287 NM_016589 ENSG00000113845 TIMMDC1 C3orf1|MC1DN31 translocase of inner mitochondrial membrane domain containing 1 protein-coding 178.334 chr10 58696994 58697581 + 1.16667 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -17728 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 264.5-20 chr9 87001533 87001879 + 1.16667 NA non-coding (NR_049794, exon 7 of 7) non-coding (NR_049794, exon 7 of 7) 40420 NR_027471 440173 Hs.127361 NR_027471 ENSG00000269994 LOC440173 - uncharacterized LOC440173 ncRNA 192-46 chr7 92156193 92156420 + 1.16667 NA intron (NM_001161528, intron 2 of 4) L1M5|LINE|L1 8970 NM_001161528 401387 Hs.671729 NM_001045475 ENSG00000240720 LRRD1 - leucine rich repeats and death domain containing 1 protein-coding 146.5-34 chr16 28529000 28529249 + 1.16667 NA Intergenic LTR54B|LTR|ERV1 9850 NM_001042483 26471 Hs.513463 NM_012385 ENSG00000176046 NUPR1 COM1|P8 nuclear protein 1, transcriptional regulator protein-coding 381.5 chr7 41072004 41072400 + 1.16667 NA Intergenic Intergenic -29402 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 159.334-3 chr2 115085486 115085693 + 1.16667 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 21016 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 165.334-3 chr13 112558507 112558698 + 1.16667 NA intron (NM_006322, intron 4 of 21) intron (NM_006322, intron 4 of 21) 29551 NM_001286277 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 286.334-4 chr15 58779516 58779897 + 1.16667 NA intron (NM_001040450, intron 1 of 8) intron (NM_001040450, intron 1 of 8) 8404 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 179.667-16 chr15 89437466 89437688 + 1.16667 NA Intergenic MIRb|SINE|MIR 37406 NR_160724 105371031 NR_160724 LOC105371031 - uncharacterized LOC105371031 ncRNA 328.667-10 chr4 23698935 23699296 + 1.16667 NA Intergenic Intergenic 182177 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 217-39 chr9 97634178 97634451 + 1.16667 NA promoter-TSS (NM_139246) promoter-TSS (NM_139246) 493 NM_002486 4686 Hs.595669 NM_002486 ENSG00000136937 NCBP1 CBP80|NCBP|Sto1 nuclear cap binding protein subunit 1 protein-coding 161.5-2 chr1 94253202 94253463 + 1.16667 NA Intergenic MIR3|SINE|MIR -5586 NM_001328664 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 238.5-33 chr8 77181133 77181517 + 1.16667 NA Intergenic Intergenic -180281 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 258.001-2 chr5 45043005 45043279 + 1.16667 NA Intergenic L2a|LINE|L2 234195 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 197.334-2 chr4 48162843 48163067 + 1.16667 NA intron (NM_003215, intron 8 of 17) L1M5|LINE|L1 -28705 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 172.167-15 chr14 75874462 75874762 + 1.16667 NA intron (NM_015072, intron 29 of 31) L1ME4a|LINE|L1 107383 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 143.5-67 chr5 154101260 154101467 + 1.16667 NA Intergenic Intergenic 62396 NM_005927 4238 Hs.432818 NM_005927 ENSG00000037749 MFAP3 - microfibril associated protein 3 protein-coding 144.834-2 chr15 41220118 41220276 + 1.16667 NA intron (NM_001286441, intron 2 of 11) intron (NM_001286441, intron 2 of 11) 10560 NM_152596 161829 Hs.307999 NM_152596 ENSG00000178997 EXD1 EXDL1 exonuclease 3'-5' domain containing 1 protein-coding 284.333-4 chr21 15384819 15385292 + 1.16667 NA Intergenic AluSq|SINE|Alu -320055 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 294.834-2 chr17 58421735 58422036 + 1.16667 NA 3' UTR (NM_001080439, exon 6 of 6) 3' UTR (NM_001080439, exon 6 of 6) -4303 NM_017763 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 194.334 chr10 58442425 58442621 + 1.16667 NA Intergenic L1MEb|LINE|L1 57113 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 120.834-4 chr18 505984 506218 + 1.16667 NA Intergenic Intergenic -5400 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 225.333-32 chr8 102883125 102883525 + 1.16667 NA intron (NR_126339, intron 2 of 2) L2b|LINE|L2 19054 NR_126339 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 171.834-6 chr4 134359920 134360174 + 1.16667 NA Intergenic L1PA16|LINE|L1 -63821 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 130.333-45 chr19 41310625 41310803 + 1.16667 NA 5' UTR (NM_001346100, exon 1 of 5) 5' UTR (NM_001346100, exon 1 of 5) 237 NM_001346100 90324 Hs.437497 NM_052848 ENSG00000142039 CCDC97 - coiled-coil domain containing 97 protein-coding 225.167-22 chr4 30285589 30285825 + 1.16667 NA Intergenic Intergenic -434662 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 139.334-5 chr2 81372529 81372686 + 1.16667 NA Intergenic Intergenic 94339 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 273.167-17 chr8 132187172 132187640 + 1.16667 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -82141 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 276.834-4 chr6 37989248 37989627 + 1.16667 NA intron (NM_021943, intron 2 of 5) MLT1A0|LTR|ERVL-MaLR 169710 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 238.5 chr1 68561238 68561526 + 1.16667 NA Intergenic L1PA17|LINE|L1 -64300 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 572.167 chr12 1983768 1984655 + 1.16667 NA intron (NM_152640, intron 3 of 8) L1MEf|LINE|L1 20246 NM_152640 196513 Hs.130934 NM_152640 ENSG00000151065 DCP1B DCP1 decapping mRNA 1B protein-coding 207.334-2 chr19 43967997 43968249 + 1.16667 NA TTS (NM_001297588) TTS (NM_001297588) -16047 NM_001260488 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 247.167-19 chr8 40148097 40148309 + 1.16667 NA Intergenic Intergenic -5279 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 240-29 chr5 138780914 138781185 + 1.16667 NA intron (NM_001323982, intron 2 of 18) intron (NM_001323982, intron 2 of 18) -27125 NR_134244 105379194 Hs.445981 NR_134244 ENSG00000253404 LOC105379194 - uncharacterized LOC105379194 ncRNA 337-2 chr14 53846699 53847071 + 1.16667 NA Intergenic Arthur1|DNA|hAT-Tip100 101599 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 173.667-72 chr9 102757750 102757921 + 1.16667 NA Intergenic L1MC5a|LINE|L1 -237498 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 269.5-11 chr2 15239080 15239414 + 1.16667 NA intron (NR_052013, intron 44 of 50) L1ME4c|LINE|L1 322087 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 249.167-11 chr5 45187842 45188236 + 1.16667 NA Intergenic Intergenic 379092 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 234-5 chr1 216116127 216116665 + 1.16667 NA intron (NM_206933, intron 21 of 71) intron (NM_206933, intron 21 of 71) 43931 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 116.833-31 chr20 2880288 2880497 + 1.16667 NA intron (NM_080840, intron 1 of 22) Charlie7|DNA|hAT-Charlie 6896 NM_080840 5786 Hs.269577 NM_002836 ENSG00000132670 PTPRA HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA protein tyrosine phosphatase receptor type A protein-coding 256.5-35 chr7 116008863 116009161 + 1.16667 NA intron (NM_012252, intron 1 of 7) intron (NM_012252, intron 1 of 7) 21751 NM_001018058 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 277.334-5 chr7 38011776 38012182 + 1.16667 NA Intergenic HAL1|LINE|L1 90660 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 327.667-7 chr20 19918568 19919042 + 1.16667 NA intron (NM_001242581, intron 2 of 11) intron (NM_001242581, intron 2 of 11) 29239 NM_018993 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 113.5-53 chr2 220730372 220730475 + 1.16667 NA Intergenic Intergenic -823858 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 360.334-4 chr20 59030286 59030777 + 1.16667 NA intron (NR_037930, intron 4 of 5) intron (NR_037930, intron 4 of 5) 1804 NM_006886 514 Hs.177530 NM_006886 ENSG00000124172 ATP5F1E ATP5E|ATPE|MC5DN3 ATP synthase F1 subunit epsilon protein-coding 206.667-7 chr10 12855216 12855450 + 1.16667 NA Intergenic Intergenic -129980 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 359.001 chr5 26636603 26636912 + 1.16667 NA Intergenic AluSx1|SINE|Alu 401829 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 205.667-34 chr2 100303303 100303535 + 1.16667 NA intron (NM_198461, intron 2 of 11) L2c|LINE|L2 19314 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 259.667-27 chr8 88903093 88903410 + 1.16667 NA Intergenic L1MA1|LINE|L1 -575768 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 133.5-51 chr5 5211481 5211616 + 1.16667 NA intron (NM_139056, intron 10 of 22) L1ME3A|LINE|L1 71218 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 184.667-26 chr17 64057052 64057313 + 1.16667 NA intron (NM_001433, intron 12 of 21) intron (NM_001433, intron 12 of 21) -36548 NM_001099787 3384 Hs.431460 NM_000873 ENSG00000108622 ICAM2 CD102 intercellular adhesion molecule 2 protein-coding 162.667-35 chr18 10138367 10138682 + 1.16667 NA Intergenic Intergenic 224508 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 216.167-12 chr2 101894686 101895025 + 1.16667 NA TTS (NM_145687) TTS (NM_145687) -88610 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 238.001 chr10 98583793 98584243 + 1.16667 NA intron (NM_021828, intron 9 of 11) L1MB7|LINE|L1 -137055 NM_182639 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 147.334-8 chr8 115646527 115646693 + 1.16667 NA intron (NM_014112, intron 1 of 6) intron (NM_014112, intron 1 of 6) 21403 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 238.334-3 chr4 31024133 31024553 + 1.16667 NA intron (NM_001173523, intron 2 of 2) MIRb|SINE|MIR -146801 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 144.834-4 chr2 198564060 198564206 + 1.16667 NA Intergenic L1PA15|LINE|L1 -189036 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 181.167-4 chr10 81413190 81413499 + 1.16667 NA Intergenic Intergenic -461850 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 289.001-3 chr22 34979750 34980042 + 1.16667 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 18020 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 213.667-42 chr8 22540816 22541080 + 1.16667 NA 3' UTR (NM_001243975, exon 13 of 13) 3' UTR (NM_001243975, exon 13 of 13) -10979 NM_005775 10174 Hs.528572 NM_005775 ENSG00000120896 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 423.167 chr4 75309397 75309807 + 1.16667 NA Intergenic Intergenic -44474 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 228.5-3 chr10 72473649 72474012 + 1.16667 NA intron (NM_001195519, intron 3 of 6) intron (NM_001195519, intron 3 of 6) 50156 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 224.5-19 chr5 77676550 77676788 + 1.16667 NA Intergenic AluSq2|SINE|Alu -37972 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 301.5-12 chr8 66581860 66582348 + 1.16667 NA intron (NM_001144755, intron 8 of 14) L1MA5|LINE|L1 31114 NM_001080416 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 294.167-3 chr10 6591227 6591530 + 1.16667 NA Intergenic Intergenic -10732 NM_001323265 5588 Hs.498570 NM_006257 ENSG00000065675 PRKCQ PRKCT|nPKC-theta protein kinase C theta protein-coding 198.834-12 chr8 140048674 140048915 + 1.16667 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 51741 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 234.833-13 chr2 22409411 22409958 + 1.16667 NA Intergenic Intergenic -126795 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 217-5 chr12 59945820 59946136 + 1.16667 NA Intergenic Intergenic 256608 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 177-44 chr3 17703444 17703747 + 1.16667 NA intron (NM_001349076, intron 1 of 22) intron (NM_001349076, intron 1 of 22) -3575 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 222.667-15 chr18 55417483 55417734 + 1.16667 NA intron (NM_001348217, intron 4 of 18) intron (NM_001348217, intron 4 of 18) 4689 NM_001348213 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 191.667-54 chr7 88056850 88057194 + 1.16667 NA intron (NM_001324421, intron 3 of 28) MARNA|DNA|TcMar-Mariner 122771 NM_001324420 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 280-6 chr14 64672859 64673156 + 1.16667 NA Intergenic Intergenic -31417 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 183.833-38 chr7 45128918 45129268 + 1.16667 NA Intergenic L1MB7|LINE|L1 -17346 NM_001261834 9238 Hs.231411 NM_004749 ENSG00000136270 TBRG4 CPR2|FASTKD4 transforming growth factor beta regulator 4 protein-coding 290.001 chr15 68233257 68233604 + 1.16667 NA Intergenic MIR3|SINE|MIR -3702 NM_017882 54982 Hs.584921 NM_017882 ENSG00000128973 CLN6 CLN4A|HsT18960|nclf CLN6 transmembrane ER protein protein-coding 148.167-8 chr10 72938423 72938578 + 1.16667 NA intron (NM_001318125, intron 2 of 2) L1MB8|LINE|L1 16306 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 339.167 chr13 41832658 41833068 + 1.16667 NA intron (NM_001009814, intron 13 of 25) intron (NM_001009814, intron 13 of 25) 128222 NM_001009814 23078 Hs.368282 NM_015058 ENSG00000102763 VWA8 KIAA0564|P7BP2 von Willebrand factor A domain containing 8 protein-coding 178-13 chr11 114725239 114725492 + 1.16667 NA Intergenic MER73|LTR|ERVL 46838 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 156.667-31 chr14 53278953 53279273 + 1.16667 NA Intergenic LTR18B|LTR|ERVL 125759 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 376.334 chr2 58633381 58633780 + 1.16667 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 112827 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 176-39 chr6 149334770 149335225 + 1.16667 NA intron (NM_015093, intron 1 of 8) intron (NM_015093, intron 1 of 8) 16697 NM_015093 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 291.001 chr4 93635496 93635895 + 1.16667 NA intron (NM_001286838, intron 13 of 14) intron (NM_001286838, intron 13 of 14) -193058 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 253.667-21 chr8 111906437 111906716 + 1.16667 NA Intergenic Intergenic 529937 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 203.834-2 chr5 10796973 10797237 + 1.16667 NA Intergenic L1MC5|LINE|L1 -35871 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 264.5-11 chr4 74946290 74946735 + 1.16667 NA intron (NM_015393, intron 1 of 3) L1MC5|LINE|L1 13396 NM_015393 25849 Hs.105460 NM_015393 ENSG00000169116 PARM1 Cipar1|DKFZP564O0823|PARM-1|WSC4 prostate androgen-regulated mucin-like protein 1 protein-coding 301.667-5 chr15 76252222 76252574 + 1.16667 NA intron (NM_000126, intron 9 of 11) intron (NM_000126, intron 9 of 11) 7754 NR_028510 7302 Hs.684881 NR_002721 TYRO3P - TYRO3P protein tyrosine kinase pseudogene pseudo 272.167 chr1 42792431 42792709 + 1.16667 NA intron (NM_001354602, intron 2 of 5) intron (NM_001354602, intron 2 of 5) 7538 NM_001354602 100129924 Hs.720780 NM_001242750 ENSG00000274386 TMEM269 - transmembrane protein 269 protein-coding 140.834-4 chr3 78226696 78227076 + 1.16667 NA Intergenic Intergenic -177923 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 189.5-3 chr1 80435504 80435736 + 1.16667 NA Intergenic MLT2C2|LTR|ERVL -100135 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 217.833-13 chr2 48161646 48162000 + 1.16667 NA Intergenic L1MA4|LINE|L1 -152859 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 262.834-5 chr8 133735075 133735403 + 1.16667 NA Intergenic L2c|LINE|L2 42113 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 285.833-8 chr5 102652769 102653174 + 1.16667 NA intron (NR_103753, intron 1 of 2) intron (NR_103753, intron 1 of 2) 18493 NR_103755 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 164.667-42 chr21 28642083 28642246 + 1.16667 NA Intergenic Intergenic 102846 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 119.167-14 chr11 98464896 98465024 + 1.16667 NA Intergenic L1MC3|LINE|L1 -555989 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 186.834-2 chr13 44054858 44055063 + 1.16667 NA Intergenic Intergenic 32625 NR_026955 121838 Hs.201441 NR_026955 LINC00284 NCRNA00284 long intergenic non-protein coding RNA 284 ncRNA 201.167-19 chr3 83833938 83834270 + 1.16667 NA Intergenic L1MA8|LINE|L1 1035471 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 203.167-38 chr9 2871451 2871768 + 1.16667 NA Intergenic Intergenic -27514 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 254.667-35 chrX 18762674 18762993 + 1.16667 NA intron (NM_152226, intron 9 of 17) MADE1|DNA|TcMar-Mariner -70146 NR_046642 100874004 NR_046642 PPEF1-AS1 - PPEF1 antisense RNA 1 ncRNA 116.667-24 chr12 65173179 65173296 + 1.16667 NA intron (NM_001167614, intron 1 of 12) intron (NM_001167614, intron 1 of 12) 3654 NM_014319 23592 Hs.744150 NM_014319 ENSG00000174106 LEMD3 MAN1 LEM domain containing 3 protein-coding 227.834-5 chr4 77911292 77911512 + 1.16667 NA intron (NM_020236, intron 7 of 8) intron (NM_020236, intron 7 of 8) 48572 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 218.833-22 chr4 38394037 38394365 + 1.16667 NA Intergenic Intergenic 27287 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 115-25 chr14 29289578 29289698 + 1.16667 NA Intergenic Intergenic -503851 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 289.167 chr1 25171293 25171714 + 1.16667 NA Intergenic L2a|LINE|L2 60999 NM_207170 25949 Hs.20013 NM_015484 ENSG00000117614 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA splicing factor protein-coding 184-32 chr3 62726598 62726814 + 1.16667 NA intron (NM_003716, intron 3 of 29) intron (NM_003716, intron 3 of 29) 148710 NM_183394 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 319.667 chr1 83022578 83023171 + 1.16667 NA intron (NR_147074, intron 5 of 10) L2b|LINE|L2 -36666 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 171.5-7 chr11 57029489 57029845 + 1.16667 NA Intergenic Intergenic -7867 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 172.5-38 chr3 96966306 96966738 + 1.16667 NA intron (NM_001080448, intron 2 of 17) intron (NM_001080448, intron 2 of 17) 151928 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 295.167 chr1 37202986 37203429 + 1.16667 NA Intergenic MER47B|DNA|TcMar-Tigger 41644 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 257.5-13 chr5 12898963 12899288 + 1.16667 NA intron (NR_147005, intron 4 of 4) intron (NR_147005, intron 4 of 4) 133761 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 198.5-35 chr5 157876318 157876604 + 1.16667 NA Intergenic L1MB7|LINE|L1 -17316 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 127.333-42 chr16 60896238 60896444 + 1.16667 NA Intergenic L1MEf|LINE|L1 159425 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 299.5-3 chr11 69583227 69583539 + 1.16667 NA Intergenic MER46C|DNA|TcMar-Tigger -57722 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 187.5-39 chr5 37636180 37636650 + 1.16667 NA intron (NM_001345998, intron 10 of 17) L1MC4a|LINE|L1 198407 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 165.5-42 chr3 187260474 187260704 + 1.16667 NA intron (NR_033519, intron 3 of 9) intron (NR_033519, intron 3 of 9) -30683 NR_135551 101929130 NR_135551 ENSG00000283175 LOC101929130 - uncharacterized LOC101929130 ncRNA 168.834-6 chr4 52034397 52034572 + 1.16667 NA intron (NM_000232, intron 1 of 5) MER2|DNA|TcMar-Tigger 3835 NM_000232 6443 Hs.438953 NM_000232 ENSG00000163069 SGCB A3b|LGMD2E|LGMDR4|SGC sarcoglycan beta protein-coding 138.5-71 chr7 11789151 11789288 + 1.16667 NA intron (NM_015204, intron 1 of 26) L2a|LINE|L2 42979 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 187-5 chr10 28490835 28491131 + 1.16667 NA intron (NR_134496, intron 1 of 2) intron (NR_134496, intron 1 of 2) 4830 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 302.5-5 chr21 16562625 16563013 + 1.16667 NA intron (NR_136547, intron 2 of 2) intron (NR_136547, intron 2 of 2) 22991 NR_029480 406885 NR_029480 ENSG00000199030 MIRLET7C LET7C|MIRNLET7C|hsa-let-7c|let-7c microRNA let-7c ncRNA 184-14 chr14 38661415 38661682 + 1.16667 NA Intergenic L1M5|LINE|L1 -221048 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 116.834-6 chr18 13125097 13125229 + 1.16667 NA TTS (NM_032142) TTS (NM_032142) -93597 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 176.5-22 chr14 47743992 47744288 + 1.16667 NA Intergenic L3|LINE|CR1 16964 NR_037503 100500919 NR_037503 ENSG00000263945 MIR548Y - microRNA 548y ncRNA 156.167-21 chr14 26930514 26930788 + 1.16667 NA Intergenic Intergenic 22009 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 208.333-45 chr9 27545305 27545663 + 1.16667 NA Intergenic MIRb|SINE|MIR -15670 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 212.334-7 chr8 103886598 103886879 + 1.16667 NA intron (NM_001282881, intron 2 of 20) L1ME4a|LINE|L1 67518 NM_001348502 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 161.5-29 chr20 46298721 46298897 + 1.16667 NA intron (NM_021248, intron 1 of 11) L2c|LINE|L2 9689 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 239.667-35 chrX 84442762 84443172 + 1.16667 NA intron (NM_001177478, intron 3 of 9) intron (NM_001177478, intron 3 of 9) 59486 NM_144657 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 198.834-6 chr14 72096681 72097072 + 1.16667 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 163349 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 185.167-18 chr18 4587261 4587542 + 1.16667 NA Intergenic Intergenic -132094 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 221.167-13 chr16 47445350 47445654 + 1.16667 NA intron (NM_030790, intron 5 of 17) Charlie2a|DNA|hAT-Charlie 15561 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 225-7 chr11 37562932 37563248 + 1.16667 NA Intergenic Intergenic -375511 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 151.833-45 chr5 72915285 72915563 + 1.16667 NA 3' UTR (NM_153188, exon 25 of 25) 3' UTR (NM_153188, exon 25 of 25) 36833 NR_039968 100616152 NR_039968 ENSG00000263593 MIR4804 - microRNA 4804 ncRNA 135.5-89 chrX 50313828 50314152 + 1.16667 NA intron (NM_033031, intron 8 of 12) intron (NM_033031, intron 8 of 12) 29448 NM_033670 85417 Hs.130310 NM_033031 ENSG00000147082 CCNB3 - cyclin B3 protein-coding 128-95 chr9 89902741 89902948 + 1.16667 NA Intergenic Intergenic -66572 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 198.167-32 chr7 19306209 19306492 + 1.16667 NA Intergenic Intergenic -160929 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 175.334-13 chr8 133429689 133430043 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR -132562 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 265.501-2 chr2 110667921 110668161 + 1.16667 NA intron (NM_001278616, intron 5 of 23) intron (NM_001278616, intron 5 of 23) -9792 NR_132975 106635550 NR_132975 SNORD132 - small nucleolar RNA, C/D box 132 snoRNA 187.167-36 chr6 45517735 45517908 + 1.16667 NA intron (NM_001015051, intron 7 of 7) intron (NM_001015051, intron 7 of 7) 95546 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 239-16 chr6 162353215 162353528 + 1.16667 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -373761 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 425.168-2 chr5 16283046 16283443 + 1.16667 NA Intergenic Intergenic 103003 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 144.334 chr1 101649019 101649170 + 1.16667 NA Intergenic L1MA4|LINE|L1 197986 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 208.834-8 chr5 51051550 51051883 + 1.16667 NA Intergenic Intergenic -81529 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 211-19 chr17 76657068 76657371 + 1.16667 NA Intergenic MSTB|LTR|ERVL-MaLR -13462 NM_018414 55808 Hs.105352 NM_018414 ENSG00000070526 ST6GALNAC1 HSY11339|SIAT7A|ST6GalNAcI|STYI ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 protein-coding 318.167-5 chr4 76065643 76066481 + 1.16667 NA intron (NM_001130017, intron 1 of 9) intron (NM_001130017, intron 1 of 9) -8633 NM_001130016 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 217.334-4 chr2 21930257 21930628 + 1.16667 NA Intergenic Intergenic -219790 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 244.834-3 chr7 27272367 27272671 + 1.16667 NA Intergenic Intergenic -25290 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 158.334-3 chr20 12515571 12515857 + 1.16667 NA Intergenic Intergenic 421249 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 205.834-4 chr17 60964462 60964687 + 1.16667 NA intron (NM_001330413, intron 14 of 25) L1MA4|LINE|L1 286723 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 381.168 chr11 55853854 55854271 + 1.16667 NA Intergenic Intergenic 15310 NM_001005496 390144 Hs.554527 NM_001005496 ENSG00000205029 OR5D16 OR11-154 olfactory receptor family 5 subfamily D member 16 protein-coding 195.167-38 chr8 47686561 47686858 + 1.16667 NA intron (NR_148204, intron 11 of 19) intron (NR_148204, intron 11 of 19) 27045 NM_001352960 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 374.001 chr4 183447698 183448091 + 1.16667 NA 3' UTR (NM_017632, exon 3 of 3) 3' UTR (NM_017632, exon 3 of 3) 3258 NM_001317343 55602 Hs.592508 NM_017632 ENSG00000168564 CDKN2AIP CARF CDKN2A interacting protein protein-coding 171.5-28 chr19 31275131 31275309 + 1.16667 NA 3' UTR (NM_020856, exon 2 of 2) 3' UTR (NM_020856, exon 2 of 2) 74216 NR_138035 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 305.167 chr1 211840827 211841165 + 1.16667 NA intron (NR_135820, intron 3 of 5) L2b|LINE|L2 10035 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 183.667-50 chr3 132816057 132816257 + 1.16667 NA intron (NR_002811, intron 6 of 10) intron (NR_002811, intron 6 of 10) -93698 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 117.334-4 chr3 167758425 167758552 + 1.16667 NA intron (NM_005025, intron 1 of 8) L1MC4a|LINE|L1 22765 NM_005025 5274 Hs.478153 NM_005025 ENSG00000163536 SERPINI1 PI12|neuroserpin serpin family I member 1 protein-coding 237.5-15 chr3 62295904 62296254 + 1.16667 NA 3' UTR (NM_002841, exon 30 of 30) 3' UTR (NM_002841, exon 30 of 30) 22868 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 223.834-6 chr20 41141491 41141774 + 1.16667 NA intron (NM_182811, intron 1 of 31) intron (NM_182811, intron 1 of 31) -3632 NR_109889 101927117 Hs.668593 NR_109889 ENSG00000226648 PLCG1-AS1 TOP1-AS1 PLCG1 antisense RNA 1 ncRNA 122.333-100 chr7 27758183 27758370 + 1.16667 NA intron (NM_001206902, intron 3 of 15) intron (NM_001206902, intron 3 of 15) 18181 NM_001079864 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 229.167-21 chr18 65446549 65446854 + 1.16667 NA Intergenic Intergenic -303551 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 202.167-15 chr16 7036238 7036467 + 1.16667 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 262543 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 320.667-4 chr15 42856231 42856898 + 1.16667 NA intron (NM_173500, intron 3 of 14) L1MC5a|LINE|L1 64214 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 153.5-47 chr4 23954880 23955287 + 1.16667 NA intron (NM_001330752, intron 2 of 13) intron (NM_001330752, intron 2 of 13) -65036 NM_013261 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 337.334 chr1 106236534 106237084 + 1.16667 NA Intergenic Intergenic -208556 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 178.334-5 chr5 43157237 43157694 + 1.16667 NA intron (NM_003432, intron 4 of 7) HERVL40-int|LTR|ERVL -34760 NM_153361 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 305.167-4 chr2 29755853 29756204 + 1.16667 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 165558 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 387.334-2 chr7 136986093 136986655 + 1.16667 NA intron (NM_001006626, intron 3 of 4) intron (NM_001006626, intron 3 of 4) 83207 NR_030165 574443 NR_030165 ENSG00000207597 MIR490 MIRN490|hsa-mir-490|miR-490 microRNA 490 ncRNA 132.334-2 chr12 1547984 1548172 + 1.16667 NA Intergenic MER119|DNA|hAT-Charlie -15886 NR_160736 107984507 NR_160736 LOC107984507 - uncharacterized LOC107984507 ncRNA 155.667-6 chr1 116298909 116299159 + 1.16667 NA Intergenic Intergenic -74210 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 257.334-2 chr10 75813844 75814230 + 1.16667 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 31276 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 243.167 chr1 20505476 20505837 + 1.16667 NA intron (NM_024544, intron 1 of 3) A-rich|Low_complexity|Low_complexity 2495 NM_024544 79594 Hs.10101 NM_024544 ENSG00000090432 MUL1 C1orf166|GIDE|MAPL|MULAN|RNF218 mitochondrial E3 ubiquitin protein ligase 1 protein-coding 326.834-2 chr22 39887954 39888336 + 1.16667 NA intron (NM_152512, intron 1 of 6) intron (NM_152512, intron 1 of 6) 5615 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 198-48 chr5 12285165 12285472 + 1.16667 NA Intergenic Intergenic -289539 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 158-54 chr8 30512252 30512434 + 1.16667 NA intron (NM_001008710, intron 5 of 8) intron (NM_001008710, intron 5 of 8) -126237 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 182.833-44 chr5 112080523 112080990 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger -79770 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 240.834-4 chr2 236483817 236484041 + 1.16667 NA intron (NR_073043, intron 5 of 19) intron (NR_073043, intron 5 of 19) 19768 NM_001270585 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 219.667-20 chr3 101572502 101572855 + 1.16667 NA Intergenic Intergenic -1416 NR_135228 57092 Hs.732633 NM_020357 ENSG00000081154 PCNP - PEST proteolytic signal containing nuclear protein protein-coding 202.167-13 chr14 73860208 73860656 + 1.16667 NA intron (NM_001371328, intron 2 of 8) AluSx3|SINE|Alu 8485 NR_163921 362.167-7 chr5 24102913 24103432 + 1.16667 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 151824 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 270.834 chr1 155398039 155398364 + 1.16667 NA intron (NM_018489, intron 6 of 27) intron (NM_018489, intron 6 of 27) -34979 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 138.167-49 chr3 12742759 12742936 + 1.16667 NA intron (NM_001284408, intron 2 of 9) MIRb|SINE|MIR 16412 NM_018306 55287 Hs.475502 NM_018306 ENSG00000088726 TMEM40 - transmembrane protein 40 protein-coding 214-11 chr14 70947205 70947475 + 1.16667 NA intron (NM_014982, intron 2 of 35) MamSINE1|SINE|tRNA-RTE 39881 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 205-9 chr15 72282388 72282692 + 1.16667 NA Intergenic Intergenic -9986 NM_001323522 56965 Hs.270244 NM_020213 ENSG00000137817 PARP6 ARTD17|PARP-6-B1|PARP-6-C|pART17 poly(ADP-ribose) polymerase family member 6 protein-coding 245.667-9 chr14 51099068 51099465 + 1.16667 NA Intergenic L1MEj|LINE|L1 -3562 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 487.667 chr14 26445911 26446741 + 1.16667 NA 3' UTR (NM_001366394, exon 4 of 4) 3' UTR (NM_001366394, exon 4 of 4) 107104 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 236.834-9 chr3 99142100 99142753 + 1.16667 NA Intergenic Tigger13a|DNA|TcMar-Tigger -240731 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 187-12 chr15 61515790 61516095 + 1.16667 NA Intergenic Intergenic -213976 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 474.334 chr2 147208426 147209200 + 1.16667 NA Intergenic L2b|LINE|L2 621756 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 386.834-2 chr2 51223420 51223921 + 1.16667 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 191069 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 263.5-5 chr11 33270997 33271444 + 1.16667 NA intron (NM_001278162, intron 1 of 15) intron (NM_001278162, intron 1 of 15) 12889 NM_001278162 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 133.334-2 chr10 112540128 112540363 + 1.16667 NA intron (NM_001365712, intron 6 of 8) intron (NM_001365712, intron 6 of 8) -92642 NM_001351082 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 144.5-88 chr8 99127454 99127713 + 1.16667 NA intron (NM_017890, intron 8 of 61) L2|LINE|L2 114317 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 123.667-98 chr7 3702573 3702872 + 1.16667 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) 401470 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 278.334-4 chr19 38428532 38428923 + 1.16667 NA Intergenic MER83|LTR|ERV1 -2422 NM_001146203 115727 Hs.130434 NM_052949 ENSG00000171777 RASGRP4 - RAS guanyl releasing protein 4 protein-coding 184-17 chr14 68959384 68959587 + 1.16667 NA intron (NM_001102, intron 1 of 20) L4_C_Mam|LINE|RTE-X 19817 NM_001102 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 163.5-44 chr22 34976138 34976352 + 1.16667 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 21671 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 199-38 chr8 107516703 107516988 + 1.16667 NA Intergenic Intergenic -18927 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 255-13 chr2 86327818 86328325 + 1.16667 NA intron (NM_001164730, intron 1 of 6) intron (NM_001164730, intron 1 of 6) 9555 NM_022912 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 357.334-3 chr4 138251733 138252242 + 1.16667 NA Intergenic L1MC4|LINE|L1 -9638 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 231-17 chr22 26845003 26845297 + 1.16667 NA Intergenic Intergenic -15061 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 206.667-53 chr9 94123890 94124151 + 1.16667 NA Intergenic L1MB3|LINE|L1 39556 NM_001253829 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 218.667-36 chr6 150315813 150316106 + 1.16667 NA Intergenic AluJo|SINE|Alu -53053 NM_001164695 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 188.167-16 chr18 64598000 64598214 + 1.16667 NA Intergenic L1PA17|LINE|L1 -338052 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 151-87 chrX 34192750 34192997 + 1.16667 NA Intergenic L1MA2|LINE|L1 -60543 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 189.167-29 chr2 236971476 236971672 + 1.16667 NA Intergenic Intergenic 84593 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 113.667-21 chr11 56564613 56564751 + 1.16667 NA Intergenic L1M2|LINE|L1 13039 NM_001004741 390167 Hs.553750 NM_001004741 ENSG00000254834 OR5M10 OR11-207 olfactory receptor family 5 subfamily M member 10 protein-coding 228.334-9 chr5 156762401 156762639 + 1.16667 NA 3' UTR (NM_000337, exon 9 of 9) 3' UTR (NM_000337, exon 9 of 9) -87775 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 231.667-29 chr8 8407535 8407922 + 1.16667 NA Intergenic MIRb|SINE|MIR -21289 NR_163138 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 360.834-2 chr5 101821871 101822362 + 1.16667 NA Intergenic Intergenic 474168 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 161.834-4 chr4 59413917 59414383 + 1.16667 NA Intergenic Intergenic 400577 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 200.001 chr10 74583077 74583580 + 1.16667 NA intron (NM_001369123, intron 7 of 9) intron (NM_001369123, intron 7 of 9) -54004 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 140.333-57 chr4 80876735 80876876 + 1.16667 NA intron (NM_152770, intron 4 of 5) intron (NM_152770, intron 4 of 5) -153903 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 302.334-3 chr14 58283147 58283466 + 1.16667 NA intron (NR_029435, intron 2 of 3) intron (NR_029435, intron 2 of 3) -4727 NR_146595 55451 NR_146595 ENSG00000279636 LINC00216 C14orf107|NCRNA00216|PRO1617 long intergenic non-protein coding RNA 216 ncRNA 216.167-17 chr3 20728080 20728451 + 1.16667 NA Intergenic L1MA3|LINE|L1 385797 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 120-40 chr15 71872652 71872792 + 1.16667 NA intron (NM_006901, intron 32 of 41) L1ME4b|LINE|L1 62168 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 281-17 chr6 101910434 101910713 + 1.16667 NA intron (NM_001166247, intron 11 of 16) intron (NM_001166247, intron 11 of 16) 511588 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 286-14 chrX 85549359 85549664 + 1.16667 NA Intergenic Intergenic -169846 NM_001307940 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 173.834 chr1 55250963 55251381 + 1.16667 NA Intergenic Intergenic 25531 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 139.167-13 chr12 25722198 25722399 + 1.16667 NA Intergenic Intergenic -73720 NM_001145727 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 172.334-5 chr5 10314930 10315147 + 1.16667 NA Intergenic MSTC|LTR|ERVL-MaLR -7136 NM_138809 134147 Hs.192586 NM_138809 ENSG00000164237 CMBL JS-1 carboxymethylenebutenolidase homolog protein-coding 340.5-7 chr8 130662157 130662805 + 1.16667 NA Intergenic MLT1H|LTR|ERVL-MaLR -218807 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 118-38 chr14 71564311 71564472 + 1.16667 NA intron (NM_001354289, intron 5 of 23) intron (NM_001354289, intron 5 of 23) -21907 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 183.667-32 chr17 64046999 64047202 + 1.16667 NA intron (NM_001433, intron 19 of 21) AluSx|SINE|Alu -26466 NM_001099787 3384 Hs.431460 NM_000873 ENSG00000108622 ICAM2 CD102 intercellular adhesion molecule 2 protein-coding 176.5-21 chr14 45219756 45219959 + 1.16667 NA intron (NM_018353, intron 11 of 16) intron (NM_018353, intron 11 of 16) 33345 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 138.167-21 chr14 87064258 87064505 + 1.16667 NA Intergenic Intergenic 158603 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 178.167-43 chr7 20382218 20382556 + 1.16667 NA intron (NM_002214, intron 6 of 13) intron (NM_002214, intron 6 of 13) -50625 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 181.5-17 chr12 125968128 125968370 + 1.16667 NA intron (NR_034132, intron 2 of 5) intron (NR_034132, intron 2 of 5) 15125 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 242.834 chr1 171796501 171796738 + 1.16667 NA exon (NM_015935, exon 8 of 8) exon (NM_015935, exon 8 of 8) 14959 NM_014955 51603 Hs.494705 NM_014955 ENSG00000010165 EEF1AKNMT 5630401D24Rik|CGI-01|DFNB26|DFNB26M|KIAA0859|METTL13|feat eEF1A lysine and N-terminal methyltransferase protein-coding 231.667-21 chr2 123203566 123203800 + 1.16667 NA Intergenic L1MA2|LINE|L1 -130202 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 214.167-14 chr2 211934128 211934537 + 1.16667 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 492028 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 141-4 chr1 164865599 164865776 + 1.16667 NA intron (NM_001353131, intron 7 of 7) MIR|SINE|MIR -91046 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 333.834-3 chr7 82108628 82109194 + 1.16667 NA intron (NM_000722, intron 6 of 38) intron (NM_000722, intron 6 of 38) 99734 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 199.667-7 chr10 92331242 92331415 + 1.16667 NA intron (NM_017824, intron 2 of 5) intron (NM_017824, intron 2 of 5) 40161 NM_017824 54708 Hs.573490 NM_017824 ENSG00000198060 MARCH5 MARCH-V|MITOL|RNF153 membrane associated ring-CH-type finger 5 protein-coding 255.834-3 chr16 24123475 24123803 + 1.16667 NA intron (NM_002738, intron 8 of 16) L2c|LINE|L2 -79477 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 196.834-4 chr20 46121387 46121601 + 1.16667 NA intron (NR_136327, intron 1 of 7) intron (NR_136327, intron 1 of 7) 3180 NM_001322421 958 Hs.472860 NM_001250 ENSG00000101017 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule protein-coding 179.334-5 chr21 25917411 25917684 + 1.16667 NA intron (NM_001136131, intron 11 of 15) intron (NM_001136131, intron 11 of 15) -181893 NM_001003697 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 183.5-31 chr2 38694493 38694775 + 1.16667 NA intron (NM_138801, intron 4 of 6) AluYm1|SINE|Alu 28520 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 128.333-109 chr6 152335430 152335625 + 1.16667 NA intron (NM_182961, intron 76 of 145) intron (NM_182961, intron 76 of 145) -45003 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 176.5-24 chr14 68381118 68381356 + 1.16667 NA intron (NM_133509, intron 8 of 10) MIR3|SINE|MIR 247550 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 246-7 chr15 58777024 58777454 + 1.16667 NA intron (NM_001040450, intron 1 of 8) intron (NM_001040450, intron 1 of 8) 5937 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 213.667-18 chr2 135070062 135070420 + 1.16667 NA intron (NM_001172435, intron 3 of 24) LTR56|LTR|ERV1 17949 NM_012233 22930 Hs.306327 NM_012233 ENSG00000115839 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein catalytic subunit 1 protein-coding 162.333-28 chr19 41751811 41752078 + 1.16667 NA Intergenic Intergenic -3586 NM_002483 4680 Hs.466814 NM_002483 ENSG00000086548 CEACAM6 CD66c|CEAL|NCA carcinoembryonic antigen related cell adhesion molecule 6 protein-coding 265-9 chr14 86955322 86956063 + 1.16667 NA Intergenic Intergenic 49914 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 209.334-4 chr5 104881004 104881336 + 1.16667 NA Intergenic AluSx1|SINE|Alu -218304 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 262.667-4 chr10 72470118 72470425 + 1.16667 NA intron (NM_001195519, intron 3 of 6) intron (NM_001195519, intron 3 of 6) 53715 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 243.334 chr1 190821703 190822108 + 1.16667 NA Intergenic Intergenic 197015 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 139.333-54 chr20 58214060 58214294 + 1.16667 NA Intergenic MER113|DNA|hAT-Charlie 14476 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 166.167-20 chr16 79503943 79504118 + 1.16667 NA Intergenic Intergenic 96707 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 231.167-10 chr18 71329714 71330052 + 1.16667 NA Intergenic Intergenic 249073 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 158.167-39 chr4 93109186 93109537 + 1.16667 NA intron (NM_001510, intron 3 of 15) intron (NM_001510, intron 3 of 15) -719392 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 327.167-4 chr17 71024821 71025157 + 1.16667 NA Intergenic Intergenic 177190 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 251-5 chr11 113636420 113636757 + 1.16667 NA Intergenic Intergenic 69720 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 127.5-9 chr1 242721246 242721392 + 1.16667 NA Intergenic Intergenic -196622 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 144.167-8 chr10 8111142 8111430 + 1.16667 NA Intergenic Intergenic 56598 NM_001002295 2625 Hs.524134 NM_002051 ENSG00000107485 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 318.334-4 chr4 115785261 115785687 + 1.16667 NA Intergenic Intergenic -514251 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 273.5-21 chr6 39550829 39551149 + 1.16667 NA intron (NM_001289020, intron 10 of 21) L1MA4|LINE|L1 -119599 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 181.667-7 chr1 213159845 213160046 + 1.16667 NA intron (NM_001136138, intron 5 of 13) intron (NM_001136138, intron 5 of 13) 108704 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 208-5 chr11 19855132 19855433 + 1.16667 NA intron (NM_182964, intron 3 of 37) MIRb|SINE|MIR -95199 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 208.5-44 chr6 140790685 140791024 + 1.16667 NA Intergenic Intergenic 107040 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 144.5-82 chr6 112391127 112391273 + 1.16667 NA Intergenic Intergenic 43870 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 185.333-55 chr6 57265864 57266154 + 1.16667 NA Intergenic Intergenic -2663 NR_109774 100506188 Hs.485640 NR_109774 LOC100506188 - uncharacterized LOC100506188 ncRNA 199.667 chr1 83082264 83082451 + 1.16667 NA intron (NR_147074, intron 6 of 10) intron (NR_147074, intron 6 of 10) -96149 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 363.5 chr10 72897546 72897942 + 1.16667 NA intron (NR_130125, intron 1 of 7) L3|LINE|CR1 4005 NR_130125 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 284-8 chr6 52984200 52984598 + 1.16667 NA intron (NM_001512, intron 5 of 6) intron (NM_001512, intron 5 of 6) 10885 NM_001512 2941 Hs.485557 NM_001512 ENSG00000170899 GSTA4 GSTA4-4|GTA4 glutathione S-transferase alpha 4 protein-coding 273.667-14 chr2 203549238 203549622 + 1.16667 NA Intergenic MLT1K|LTR|ERVL-MaLR -14129 NM_001329728 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 183.667-9 chr1 168009637 168009982 + 1.16667 NA intron (NR_146230, intron 10 of 17) intron (NR_146230, intron 10 of 17) 11149 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 330.667-4 chr11 50676252 50676906 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr 267432 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 173.834-6 chr5 77401568 77401801 + 1.16667 NA intron (NM_001029851, intron 8 of 18) intron (NM_001029851, intron 8 of 18) 90632 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 234-36 chr7 87461473 87461838 + 1.16667 NA intron (NM_018849, intron 4 of 27) intron (NM_018849, intron 4 of 27) 14025 NM_000443 5244 Hs.654403 NM_000443 ENSG00000005471 ABCB4 ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3 ATP binding cassette subfamily B member 4 protein-coding 122-35 chr2 63033839 63034047 + 1.16667 NA intron (NM_001142615, intron 19 of 22) intron (NM_001142615, intron 19 of 22) 13768 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 218.001-3 chr4 148197913 148198099 + 1.16667 NA intron (NM_000901, intron 3 of 8) intron (NM_000901, intron 3 of 8) 244408 NM_001166104 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 202.333-31 chr3 167603396 167603591 + 1.16667 NA intron (NM_001348951, intron 6 of 18) intron (NM_001348951, intron 6 of 18) 50449 NM_001348952 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 198.834-4 chr11 99151184 99151360 + 1.16667 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 130323 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 131.834 chr10 115566623 115566763 + 1.16667 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 473328 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 183.667-51 chr3 138227660 138227959 + 1.16667 NA intron (NM_001282342, intron 4 of 19) MER5A1|DNA|hAT-Charlie 40278 NM_001282342 25852 Hs.744868 NM_014154 ENSG00000114098 ARMC8 GID5|HSPC056|S863-2|VID28 armadillo repeat containing 8 protein-coding 213.5-23 chr20 6891341 6891543 + 1.16667 NA Intergenic MER5A|DNA|hAT-Charlie 123756 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 202.167-5 chr10 56937602 56937894 + 1.16667 NA Intergenic HERV35I-int|LTR|ERV1 366811 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 262.167-21 chr5 58862550 58862808 + 1.16667 NA Intergenic L2c|LINE|L2 137219 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 233.834-12 chr5 164942155 164942566 + 1.16667 NA Intergenic Intergenic 472081 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 261-17 chr3 111823428 111823841 + 1.16667 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) -35546 NM_145753 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 170-78 chr8 85867074 85867278 + 1.16667 NA Intergenic Intergenic -39234 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 284.167-3 chr12 47510052 47510505 + 1.16667 NA Intergenic Intergenic 95270 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 297.667 chr12 32272178 32272717 + 1.16667 NA intron (NR_148725, intron 2 of 9) PABL_A|LTR|ERV1 -127111 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 142.667-36 chr16 9032326 9032594 + 1.16667 NA Intergenic L1MC4a|LINE|L1 -59184 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 195.167-16 chr2 139855488 139856010 + 1.16667 NA Intergenic MER58A|DNA|hAT-Charlie 730936 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 187.667-3 chr1 93308766 93309060 + 1.16667 NA Intergenic Intergenic 36898 NR_034089 100131564 Hs.732666 NR_034089 CCDC18-AS1 - CCDC18 antisense RNA 1 ncRNA 184.334-2 chr11 83578285 83578510 + 1.16667 NA intron (NM_001142699, intron 19 of 27) L1MEc|LINE|L1 104028 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 242.167-10 chr15 90462341 90462683 + 1.16667 NA intron (NM_003870, intron 15 of 37) (TG)n|Simple_repeat|Simple_repeat -67411 NM_022769 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 239 chr1 173113468 173113859 + 1.16667 NA Intergenic L2c|LINE|L2 -62700 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 313.167-7 chr9 105726439 105726837 + 1.16667 NA intron (NM_018112, intron 4 of 5) (AATA)n|Simple_repeat|Simple_repeat 32097 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 207-47 chr7 82279116 82279463 + 1.16667 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 164488 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 162.334-3 chr10 51432472 51432719 + 1.16667 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 133022 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 292-2 chr14 52659404 52660007 + 1.16667 NA intron (NM_014584, intron 9 of 15) intron (NM_014584, intron 9 of 15) 35853 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 145.5-63 chr5 45439277 45439609 + 1.16667 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 256937 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 281.667-5 chr11 33339555 33339837 + 1.16667 NA intron (NM_001278162, intron 6 of 15) MIRc|SINE|MIR -36412 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 406.167-2 chr11 77179628 77180046 + 1.16667 NA exon (NM_001369365, exon 22 of 50) exon (NM_001369365, exon 22 of 50) 51591 NM_001127180 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 226.833-21 chr8 83378966 83379324 + 1.16667 NA Intergenic Intergenic -24613 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 223.333-17 chr2 122293759 122294136 + 1.16667 NA Intergenic Intergenic 538296 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 293.167-6 chr18 56764279 56764599 + 1.16667 NA intron (NM_052834, intron 16 of 26) L1MA8|LINE|L1 113054 NM_015285 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 234.667-34 chr8 88508038 88508455 + 1.16667 NA Intergenic L1MA9|LINE|L1 -180763 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 201.334-2 chr14 51082499 51082758 + 1.16667 NA intron (NM_015163, intron 1 of 9) L1MB7|LINE|L1 13076 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 190.167-11 chr14 66767626 66767908 + 1.16667 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 260360 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 280.334-5 chr7 51879685 51880295 + 1.16667 NA Intergenic Intergenic -486734 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 172.5-56 chr7 113851249 113851428 + 1.16667 NA Intergenic Intergenic 67671 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 150.5-6 chr1 246412882 246413115 + 1.16667 NA intron (NM_001167740, intron 1 of 11) MIR|SINE|MIR 4414 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 271.334-2 chr7 12648597 12648959 + 1.16667 NA intron (NR_156701, intron 12 of 14) LTR24|LTR|ERV1 -38049 NM_212460 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 194.667-58 chr6 148648220 148648420 + 1.16667 NA Intergenic Intergenic -98710 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 317-7 chr5 166327306 166328004 + 1.16667 NA Intergenic Intergenic 598715 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 247.667-20 chr6 75173433 75173884 + 1.16667 NA intron (NM_004370, intron 13 of 65) AluSq2|SINE|Alu 32395 NM_004370 1303 Hs.101302 NM_004370 ENSG00000111799 COL12A1 BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2 collagen type XII alpha 1 chain protein-coding 257.5-7 chr10 61952286 61952725 + 1.16667 NA intron (NM_032199, intron 3 of 9) intron (NM_032199, intron 3 of 9) 50806 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 172-67 chr7 90174993 90175284 + 1.16667 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) 20669 NM_012449 26872 Hs.61635 NM_012449 ENSG00000164647 STEAP1 PRSS24|STEAP STEAP family member 1 protein-coding 306.501 chr12 15184258 15184590 + 1.16667 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 32501 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 189.167-34 chr4 2674071 2674268 + 1.16667 NA intron (NM_001256668, intron 11 of 19) intron (NM_001256668, intron 11 of 19) 48737 NM_001256668 8603 Hs.652364 NM_003704 ENSG00000125386 FAM193A C4orf8|RES4-22 family with sequence similarity 193 member A protein-coding 230.834-3 chr14 102401718 102402108 + 1.16667 NA intron (NM_014844, intron 2 of 19) L1MB3|LINE|L1 38972 NM_014844 9895 Hs.195667 NM_014844 ENSG00000196663 TECPR2 KIAA0329|SPG49 tectonin beta-propeller repeat containing 2 protein-coding 167.667-58 chr3 43482853 43483276 + 1.16667 NA intron (NM_001346464, intron 12 of 13) intron (NM_001346464, intron 12 of 13) -131102 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 131.667-97 chr5 27333896 27334169 + 1.16667 NA Intergenic Intergenic -138260 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 169.667-20 chr14 35544112 35544265 + 1.16667 NA intron (NM_194301, intron 39 of 39) MIRb|SINE|MIR 10024 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 244.667-28 chr8 11112963 11113247 + 1.16667 NA intron (NR_138153, intron 2 of 2) intron (NR_138153, intron 2 of 2) -46016 NR_134308 101929269 Hs.680442 NR_134308 ENSG00000254839 LOC101929269 - uncharacterized LOC101929269 ncRNA 131.5-87 chr9 23845266 23845532 + 1.16667 NA intron (NM_001351456, intron 2 of 8) intron (NM_001351456, intron 2 of 8) 5202 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 152.5-64 chr7 145004922 145005181 + 1.16667 NA Intergenic Intergenic -168998 NM_001042482 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 125.167-75 chr8 86435238 86435455 + 1.16667 NA intron (NM_007013, intron 14 of 24) intron (NM_007013, intron 14 of 24) 73340 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 339.167-5 chr7 52457508 52458062 + 1.16667 NA Intergenic L1MC5a|LINE|L1 -577848 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 162 chr1 6931289 6931456 + 1.16667 NA intron (NM_001349608, intron 2 of 21) intron (NM_001349608, intron 2 of 21) 145918 NM_015215 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 276.333-7 chr11 102192860 102193280 + 1.16667 NA intron (NM_001130145, intron 4 of 8) intron (NM_001130145, intron 4 of 8) 80622 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 285.5-17 chr7 137829328 137829693 + 1.16667 NA intron (NM_001321708, intron 1 of 32) MER3|DNA|hAT-Charlie 16822 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 221.5-2 chr1 98926512 98926858 + 1.16667 NA intron (NM_001037317, intron 3 of 5) L3|LINE|CR1 -77591 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 213.167-12 chr2 12413278 12413799 + 1.16667 NA intron (NR_110196, intron 4 of 5) MER96B|DNA|hAT-Tip100 214408 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 241.834-8 chr4 73933160 73933534 + 1.16667 NA Intergenic Intergenic 48680 NM_002619 5196 Hs.81564 NM_002619 ENSG00000163737 PF4 CXCL4|PF-4|SCYB4 platelet factor 4 protein-coding 254.834-2 chr13 73944029 73944287 + 1.16667 NA intron (NM_007249, intron 2 of 7) intron (NM_007249, intron 2 of 7) 189771 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 156.667-44 chr18 3944892 3945109 + 1.16667 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -17353 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 262.5-7 chr17 58732817 58733119 + 1.16667 NA intron (NM_058216, intron 8 of 8) intron (NM_058216, intron 8 of 8) -22886 NM_014906 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 195.167-17 chr2 181790334 181790697 + 1.16667 NA Intergenic Intergenic -101215 NM_006751 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 177.833-21 chr2 208935877 208936152 + 1.16667 NA Intergenic Charlie2b|DNA|hAT-Charlie 393372 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 150.833-52 chr8 129104815 129105152 + 1.16667 NA Intergenic Intergenic 136257 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 174-46 chr4 138809385 138809647 + 1.16667 NA Intergenic L2a|LINE|L2 203130 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 177.667-30 chr17 80839833 80840011 + 1.16667 NA intron (NM_020761, intron 10 of 33) intron (NM_020761, intron 10 of 33) -34290 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 182.167-32 chr5 109018730 109018933 + 1.16667 NA intron (NR_146155, intron 13 of 19) intron (NR_146155, intron 13 of 19) 94225 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 137.667-13 chr10 88841626 88841783 + 1.16667 NA intron (NM_144590, intron 1 of 5) MER57F|LTR|ERV1 10140 NM_144590 118932 Hs.217484 NM_144590 ENSG00000152766 ANKRD22 - ankyrin repeat domain 22 protein-coding 203.834-3 chr5 126935996 126936477 + 1.16667 NA intron (NM_178450, intron 1 of 4) L1ME4a|LINE|L1 94322 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 332.334-3 chr8 115898007 115898471 + 1.16667 NA Intergenic Intergenic -229264 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 193-36 chr5 12302825 12303126 + 1.16667 NA Intergenic MSTA|LTR|ERVL-MaLR -271882 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 222.667-20 chr2 81515430 81515764 + 1.16667 NA Intergenic L1MC4a|LINE|L1 -48651 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 391.334-3 chr8 17055537 17056133 + 1.16667 NA intron (NR_146233, intron 1 of 15) MLT1J1|LTR|ERVL-MaLR 28597 NR_146233 286097 Hs.403594 NM_181723 ENSG00000155970 MICU3 EFHA2 mitochondrial calcium uptake family member 3 protein-coding 201.334-7 chr8 100763544 100763969 + 1.16667 NA Intergenic Intergenic -41668 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 127.667-82 chr6 136713774 136713907 + 1.16667 NA intron (NM_005923, intron 2 of 29) intron (NM_005923, intron 2 of 29) -70207 NR_134635 101928429 Hs.672896 NR_134635 LOC101928429 - uncharacterized LOC101928429 ncRNA 168.167-51 chr7 11442185 11442544 + 1.16667 NA intron (NM_015204, intron 13 of 26) intron (NM_015204, intron 13 of 26) 389834 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 256.834 chr1 69401716 69402063 + 1.16667 NA Intergenic LTR78|LTR|ERV1 -31366 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 227.167-7 chr15 44394480 44394885 + 1.16667 NA intron (NR_157849, intron 9 of 9) intron (NR_157849, intron 9 of 9) -32947 NM_016396 51496 Hs.497967 NM_016396 ENSG00000137770 CTDSPL2 HSPC058|HSPC129 CTD small phosphatase like 2 protein-coding 174.167-11 chr13 95988961 95989154 + 1.16667 NA intron (NM_020121, intron 8 of 38) L1MB8|LINE|L1 64344 NM_020121 55757 Hs.193226 NM_020121 ENSG00000102595 UGGT2 HUGT2|UGCGL2|UGT2 UDP-glucose glycoprotein glucosyltransferase 2 protein-coding 235.667-23 chr7 104439581 104439927 + 1.16667 NA intron (NM_199000, intron 1 of 2) L1MC|LINE|L1 111098 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 270-12 chr7 78709591 78710098 + 1.16667 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -299144 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 126.167-9 chr1 238556441 238556570 + 1.16667 NA Intergenic Intergenic -70488 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 336.168 chr6 57327252 57327569 + 1.16667 NA intron (NM_000947, intron 5 of 13) intron (NM_000947, intron 5 of 13) 9780 NM_000947 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 DNA primase subunit 2 protein-coding 245.5-3 chr12 13818755 13819124 + 1.16667 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 161417 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 175.334-12 chr7 87673694 87673853 + 1.16667 NA intron (NM_001134406, intron 2 of 9) L1PA13|LINE|L1 39550 NM_001348944 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 270.667-16 chr21 30775058 30775323 + 1.16667 NA Intergenic Intergenic -19762 NM_181619 337977 Hs.567837 NM_181619 ENSG00000187005 KRTAP21-1 KAP21.1 keratin associated protein 21-1 protein-coding 207.001 chr1 25958157 25958798 + 1.16667 NA Intergenic Tigger15a|DNA|TcMar-Tigger 39586 NM_000437 5051 Hs.477083 NM_000437 ENSG00000158006 PAFAH2 HSD-PLA2 platelet activating factor acetylhydrolase 2 protein-coding 230.834-6 chr6 144944899 144945581 + 1.16667 NA Intergenic L2b|LINE|L2 539585 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 205.667-13 chr12 97928765 97929113 + 1.16667 NA Intergenic L1MA10|LINE|L1 10182 NR_039716 100616287 NR_039716 ENSG00000265861 MIR4495 - microRNA 4495 ncRNA 283.667-17 chr8 122549327 122550087 + 1.16667 NA intron (NR_131202, intron 2 of 3) LTR41|LTR|ERVL 18937 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 184-38 chr4 29781383 29781654 + 1.16667 NA Intergenic Intergenic 567226 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 185.001 chr14 60760902 60761063 + 1.16667 NA intron (NM_001177963, intron 1 of 6) intron (NM_001177963, intron 1 of 6) 26221 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 291-15 chr8 137824013 137824469 + 1.16667 NA intron (NR_161374, intron 5 of 7) AluSz6|SINE|Alu 259304 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 198.667-40 chr4 104241781 104242053 + 1.16667 NA Intergenic Intergenic -249048 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 169.5-4 chr1 172567276 172567518 + 1.16667 NA intron (NM_014283, intron 6 of 23) intron (NM_014283, intron 6 of 23) 34247 NM_014283 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 128.334-3 chr16 7133280 7133689 + 1.16667 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -199361 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 303-9 chr5 27357326 27357776 + 1.16667 NA Intergenic Intergenic -114741 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 253.5-12 chr15 58758387 58758794 + 1.16667 NA Intergenic Intergenic -8883 NM_001110 102 Hs.172028 NM_001110 ENSG00000137845 ADAM10 AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz ADAM metallopeptidase domain 10 protein-coding 229.167-32 chr7 33690622 33690860 + 1.16667 NA Intergenic L2a|LINE|L2 -214174 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 223.5-18 chr3 29498634 29498940 + 1.16667 NA intron (NM_001003792, intron 3 of 13) intron (NM_001003792, intron 3 of 13) 217475 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 261.5-21 chrX 68794431 68794875 + 1.16667 NA Intergenic Intergenic -34344 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 234-24 chr20 52333258 52333555 + 1.16667 NA Intergenic MER58A|DNA|hAT-Charlie -141421 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 214.834 chr10 51531380 51531769 + 1.16667 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 168021 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 202.167-23 chr21 31298708 31299237 + 1.16667 NA intron (NM_001353686, intron 2 of 27) intron (NM_001353686, intron 2 of 27) 45382 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 167.834 chr13 92368975 92369159 + 1.16667 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -16860 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 279.5-9 chr5 16156182 16156565 + 1.16667 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 23418 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 127-48 chr2 63227102 63227297 + 1.16667 NA intron (NR_148705, intron 13 of 16) intron (NR_148705, intron 13 of 16) -107657 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 141.334-5 chr2 214136884 214137115 + 1.16667 NA intron (NR_047660, intron 13 of 14) intron (NR_047660, intron 13 of 14) -274055 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 177.833-51 chr9 37893478 37893753 + 1.16667 NA intron (NM_033412, intron 2 of 2) intron (NM_033412, intron 2 of 2) 10512 NM_033412 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 220.667-4 chr11 27145993 27146224 + 1.16667 NA intron (NR_125767, intron 3 of 4) L1ME1|LINE|L1 72660 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 194.667-38 chr3 21032554 21033121 + 1.16667 NA Intergenic Charlie5|DNA|hAT-Charlie -372889 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 402.667-3 chr8 137497504 137498059 + 1.16667 NA Intergenic L1MEf|LINE|L1 -84193 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 231.833-4 chr14 72377057 72377595 + 1.16667 NA intron (NM_001370288, intron 3 of 16) L1MA5A|LINE|L1 -139494 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 192.333-11 chr15 65772231 65772497 + 1.16667 NA intron (NM_005848, intron 1 of 31) intron (NM_005848, intron 1 of 31) 19929 NM_005848 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 308.501 chr19 27567908 27568240 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr -225357 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 153.833-5 chr1 173225609 173225838 + 1.16667 NA Intergenic Intergenic -18392 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 320.834-2 chr3 144579825 144580422 + 1.16667 NA Intergenic Intergenic 607042 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 183.167-30 chr22 50480107 50480274 + 1.16667 NA Intergenic Intergenic -1353 NM_001253845 79924 Hs.449099 NM_024866 ENSG00000128165 ADM2 AM2|dJ579N16.4 adrenomedullin 2 protein-coding 221.5-23 chr2 239236545 239237020 + 1.16667 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) -41325 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 224.334 chr16 67221190 67221409 + 1.16667 NA intron (NM_001365159, intron 2 of 6) AluJb|SINE|Alu 5503 NM_001365158 26231 Hs.461000 NM_012163 ENSG00000125122 LRRC29 FBL9|FBXL9 leucine rich repeat containing 29 protein-coding 204-35 chr7 49724195 49724394 + 1.16667 NA Intergenic L1MC3|LINE|L1 -49344 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 289.5-5 chr2 177778472 177778891 + 1.16667 NA intron (NM_001077197, intron 10 of 20) intron (NM_001077197, intron 10 of 20) 105359 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 236.334-2 chr14 76940455 76940817 + 1.16667 NA Intergenic AluJo|SINE|Alu -19002 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 385.167-4 chr3 174051863 174052402 + 1.16667 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -131336 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 200.667-49 chr6 45818427 45818753 + 1.16667 NA Intergenic Intergenic 119007 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 319.667-3 chr13 88849970 88850494 + 1.16667 NA Intergenic MER5C|DNA|hAT-Charlie 223379 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 145.167-31 chr2 96720889 96721165 + 1.16667 NA intron (NM_001322354, intron 3 of 7) L1MB8|LINE|L1 19049 NM_030805 81562 Hs.655743 NM_030805 ENSG00000114988 LMAN2L MRT52|VIPL lectin, mannose binding 2 like protein-coding 136.833-73 chr7 121992994 121993256 + 1.16667 NA intron (NM_001206839, intron 8 of 28) intron (NM_001206839, intron 8 of 28) 119964 NM_001369396 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 205.501-2 chr5 163808780 163809190 + 1.16667 NA Intergenic Intergenic 303366 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 235.5-15 chr18 34574065 34574432 + 1.16667 NA intron (NM_001198945, intron 1 of 10) intron (NM_001198945, intron 1 of 10) -19087 NM_001198938 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 134.667-104 chr8 16987641 16987877 + 1.16667 NA Intergenic Intergenic 14586 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 141-16 chr11 113563121 113563318 + 1.16667 NA Intergenic MER57D|LTR|ERV1 -87821 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 195.5-25 chr2 49351276 49351497 + 1.16667 NA Intergenic Intergenic -196859 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 237.667-13 chr6 13147470 13147844 + 1.16667 NA intron (NM_001322308, intron 4 of 13) L4_C_Mam|LINE|RTE-X 134103 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 189.167-44 chr8 120834219 120834501 + 1.16667 NA Intergenic Intergenic -22314 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 228-26 chr5 9293936 9294275 + 1.16667 NA intron (NM_003966, intron 5 of 22) intron (NM_003966, intron 5 of 22) -217228 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 141.5-53 chr20 38510570 38510730 + 1.16667 NA intron (NM_001282917, intron 6 of 29) AluYa5|SINE|Alu -5913 NR_039605 100616190 NR_039605 ENSG00000275453 MIR548O2 - microRNA 548o-2 ncRNA 227.834-10 chr8 131768970 131769318 + 1.16667 NA Intergenic LTR33B|LTR|ERVL -134949 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 133.833-75 chr8 61592321 61592537 + 1.16667 NA intron (NM_004318, intron 14 of 24) intron (NM_004318, intron 14 of 24) 97382 NM_001164752 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 288.167-6 chr16 73491167 73491629 + 1.16667 NA Intergenic Intergenic 104593 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 195-20 chr2 99799958 99800202 + 1.16667 NA intron (NM_001025108, intron 7 of 23) L1ME1|LINE|L1 305503 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 115-7 chr1 234429570 234429758 + 1.16667 NA exon (NM_005646, exon 16 of 30) exon (NM_005646, exon 16 of 30) 49515 NM_005646 6894 Hs.498115 NM_005646 ENSG00000059588 TARBP1 TRM3|TRMT3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 180.167-45 chr5 86249397 86249561 + 1.16667 NA Intergenic L1M3|LINE|L1 -32965 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 132.333-86 chr5 90334002 90334223 + 1.16667 NA Intergenic L2a|LINE|L2 -44041 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 302.001-2 chr3 169077875 169078231 + 1.16667 NA Intergenic Intergenic 67470 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 124.5-84 chrX 24798500 24798623 + 1.16667 NA intron (NM_016937, intron 26 of 36) Tigger2a|DNA|TcMar-Tigger 54120 NR_003007 677773 Hs.689695 NR_003007 ENSG00000251869 SCARNA23 ACA12 small Cajal body-specific RNA 23 ncRNA 266.167-13 chr22 44513798 44514128 + 1.16667 NA Intergenic L1MEd|LINE|L1 -15730 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 193.001 chr1 168568309 168568698 + 1.16667 NA Intergenic Intergenic -8102 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 133.833-82 chrX 54239536 54239705 + 1.16667 NA intron (NM_001002838, intron 17 of 22) intron (NM_001002838, intron 17 of 22) -56366 NM_017848 54954 Hs.86045 NM_017848 ENSG00000184083 FAM120C CXorf17|ORF34 family with sequence similarity 120C protein-coding 162.667-60 chr5 13645659 13646016 + 1.16667 NA Intergenic Intergenic 298643 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 234.667-13 chr14 20993911 20994148 + 1.16667 NA exon (NM_001029991, exon 7 of 13) exon (NM_001029991, exon 7 of 13) 4049 NM_001029991 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 307.501 chr1 218117507 218117855 + 1.16667 NA Intergenic Intergenic 74176 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 239.5-18 chr4 5901346 5901677 + 1.16667 NA Intergenic MIRb|SINE|MIR -8425 NM_001014809 1400 Hs.135270 NM_001313 ENSG00000072832 CRMP1 CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3 collapsin response mediator protein 1 protein-coding 184.834-7 chr5 16943473 16943641 + 1.16667 NA Intergenic Intergenic -7269 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 219.5-22 chr2 118188648 118188940 + 1.16667 NA Intergenic Intergenic -2408 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 168.5-71 chr9 85977133 85977375 + 1.16667 NA intron (NM_024635, intron 9 of 22) intron (NM_024635, intron 9 of 22) 35725 NM_001321882 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 127.834 chr16 23709539 23709720 + 1.16667 NA intron (NM_001308220, intron 4 of 20) MLT1H|LTR|ERVL-MaLR 3593 NM_033266 10595 Hs.592041 NM_033266 ENSG00000134398 ERN2 IRE1-BETA|IRE1b|IRE2p|hIRE2p endoplasmic reticulum to nucleus signaling 2 protein-coding 165.167-8 chr12 2381754 2382047 + 1.16667 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 112124 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 119-70 chr4 41031946 41032148 + 1.16667 NA intron (NM_173075, intron 5 of 16) intron (NM_173075, intron 5 of 16) -174855 NM_001166053 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 304.001-4 chrX 148421152 148421450 + 1.16667 NA Intergenic L1M5|LINE|L1 -79316 NM_001169123 2334 Hs.496911 NM_002025 ENSG00000155966 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family member 2 protein-coding 263-16 chr7 89976705 89977186 + 1.16667 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -142455 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 214-31 chr4 92669251 92669568 + 1.16667 NA intron (NM_001286838, intron 2 of 14) MamRTE1|LINE|RTE-BovB 365010 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 230.834-4 chr18 2087624 2087934 + 1.16667 NA Intergenic THE1A|LTR|ERVL-MaLR 483726 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 192.5-21 chr18 75218777 75218959 + 1.16667 NA intron (NM_001308210, intron 1 of 1) intron (NM_001308210, intron 1 of 1) 7339 NM_001308210 10194 Hs.284217 NM_005786 ENSG00000179981 TSHZ1 CAA|NY-CO-33|SDCCAG33|TSH1 teashirt zinc finger homeobox 1 protein-coding 153.667-59 chr5 61692436 61692596 + 1.16667 NA intron (NR_109910, intron 3 of 7) L1MD2|LINE|L1 5916 NR_109910 101928651 Hs.662309 NR_109910 ENSG00000248529 LOC101928651 - uncharacterized LOC101928651 ncRNA 323.501-3 chr22 29709278 29709611 + 1.16667 NA Intergenic Intergenic -10559 NM_182527 164633 Hs.643608 NM_182527 ENSG00000100314 CABP7 CALN2 calcium binding protein 7 protein-coding 140.167-58 chr5 173753120 173753242 + 1.16667 NA Intergenic MIRb|SINE|MIR -6972 NR_108027 101928136 Hs.449267 NR_108027 ENSG00000253686 LINC01484 - long intergenic non-protein coding RNA 1484 ncRNA 206.5-32 chr6 161915511 161915795 + 1.16667 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 444676 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 300.667-6 chr20 4842660 4843050 + 1.16667 NA Intergenic L1MB3|LINE|L1 -19247 NM_014737 9770 Hs.631504 NM_014737 ENSG00000101265 RASSF2 CENP-34|RASFADIN Ras association domain family member 2 protein-coding 359.333-2 chr5 88399902 88400311 + 1.16667 NA intron (NR_105020, intron 1 of 2) intron (NR_105020, intron 1 of 2) 7911 NR_105020 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 183-48 chr5 86620166 86620346 + 1.16667 NA promoter-TSS (NR_145802) promoter-TSS (NR_145802) -250 NR_145802 109623460 NR_037402 SNORD138 MIR3607|mir-3607 small nucleolar RNA, C/D box 138 snoRNA 135.167-81 chr6 138163029 138163227 + 1.16667 NA intron (NM_020340, intron 1 of 33) intron (NM_020340, intron 1 of 33) 1189 NM_020340 57221 Hs.194408 NM_020340 ENSG00000112379 ARFGEF3 A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1 ARFGEF family member 3 protein-coding 171.667-84 chr8 77682805 77683000 + 1.16667 NA Intergenic Intergenic 232205 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 188.667-67 chr9 25083280 25083568 + 1.16667 NA Intergenic L1MC2|LINE|L1 -537527 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 113.167-80 chr8 139020356 139020499 + 1.16667 NA Intergenic Intergenic -106386 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 321.833-8 chr9 118494108 118494628 + 1.16667 NA Intergenic L1MA8|LINE|L1 -185303 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 285-6 chr5 148900688 148900990 + 1.16667 NA Intergenic L2a|LINE|L2 74246 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 152.5-23 chr18 13156095 13156302 + 1.16667 NA Intergenic L1MA4|LINE|L1 -62562 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 269.5-17 chr5 20300886 20301356 + 1.16667 NA intron (NM_001349556, intron 1 of 13) L4_A_Mam|LINE|RTE-X -4430 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 227.667-10 chr16 9433642 9433873 + 1.16667 NA Intergenic L1MA5|LINE|L1 11228 NR_126397 104355218 Hs.564967 NR_126397 ENSG00000261397 LINC01177 - long intergenic non-protein coding RNA 1177 ncRNA 153.167-37 chr4 37628724 37628985 + 1.16667 NA intron (NM_001085400, intron 6 of 6) intron (NM_001085400, intron 6 of 6) 44621 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 187.5-26 chr20 13985800 13986072 + 1.16667 NA intron (NM_001363752, intron 1 of 16) L1MB8|LINE|L1 4678 NM_025229 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 211.333-25 chr2 39658787 39659290 + 1.16667 NA Intergenic Intergenic -6460 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 160.834-4 chr4 168440420 168440557 + 1.16667 NA intron (NM_001345927, intron 10 of 37) intron (NM_001345927, intron 10 of 37) 40004 NM_001291510 91351 Hs.535011 NM_001012967 ENSG00000181381 DDX60L - DExD/H-box 60 like protein-coding 160.334-6 chr7 108329293 108329471 + 1.16667 NA promoter-TSS (NM_001371178) promoter-TSS (NM_001371178) -856 NM_001371178 328.833-5 chr8 77136276 77136801 + 1.16667 NA Intergenic L1M1|LINE|L1 -135494 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 114.667-95 chr4 113487655 113487802 + 1.16667 NA intron (NM_001221, intron 14 of 18) intron (NM_001221, intron 14 of 18) 194889 NM_001354280 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 185.834-8 chr7 28320131 28320353 + 1.16667 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) 20921 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 281.5-2 chr11 41797906 41798374 + 1.16667 NA intron (NR_120584, intron 2 of 5) intron (NR_120584, intron 2 of 5) 83572 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 295.667-4 chr20 44847435 44847909 + 1.16667 NA Intergenic Intergenic -37126 NM_182970 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 206.667-15 chr12 79017116 79017612 + 1.16667 NA intron (NM_001291901, intron 2 of 9) L2c|LINE|L2 -28328 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 255.5-7 chr14 96558784 96559081 + 1.16667 NA intron (NM_001363665, intron 19 of 19) L1MC5|LINE|L1 56067 NM_001293628 10914 Hs.253726 NM_032632 ENSG00000090060 PAPOLA PAP|PAP-alpha poly(A) polymerase alpha protein-coding 219.5-24 chr20 16418005 16418401 + 1.16667 NA intron (NM_001199866, intron 15 of 22) intron (NM_001199866, intron 15 of 22) 155245 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 211.833-11 chr2 45961878 45962339 + 1.16667 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 310433 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 501.667 chr22 34980843 34981771 + 1.16667 NA intron (NR_138042, intron 1 of 4) MIRb|SINE|MIR 16609 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 338.167-3 chr2 62529081 62529757 + 1.16667 NA Intergenic Intergenic -23224 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 199.167-11 chr12 41371326 41371530 + 1.16667 NA intron (NM_001164595, intron 3 of 9) L1MEd|LINE|L1 -66311 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 158.5-51 chr3 37978269 37978426 + 1.16667 NA intron (NM_001008392, intron 7 of 7) Tigger4b|DNA|TcMar-Tigger 8943 NR_029499 407015 NR_029499 ENSG00000199075 MIR26A1 MIR26A|MIRN26A1|mir-26a-1 microRNA 26a-1 ncRNA 217.334-7 chr6 45376871 45377093 + 1.16667 NA intron (NM_181356, intron 1 of 12) intron (NM_181356, intron 1 of 12) 536 NR_146635 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 375.667-2 chr14 81551722 81552243 + 1.16667 NA Intergenic L1ME2|LINE|L1 -18121 NM_001244984 6400 Hs.181300 NM_005065 ENSG00000071537 SEL1L Hrd3|PRO1063|SEL1-LIKE|SEL1L1 SEL1L adaptor subunit of ERAD E3 ubiquitin ligase protein-coding 224.167-22 chr5 158986773 158987119 + 1.16667 NA intron (NM_182708, intron 5 of 14) MIR|SINE|MIR 111010 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 127.5-3 chr1 20430391 20430514 + 1.16667 NA Intergenic Intergenic -1658 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 237.667-23 chr9 71393706 71393913 + 1.16667 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 53162 NM_001366141 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 235.334-2 chr11 99346347 99346662 + 1.16667 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -209641 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 532.001 chr5 20537435 20538291 + 1.16667 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 37850 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 313.001 chr14 78993437 78993736 + 1.16667 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -206396 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 291.334-5 chr17 9085514 9085793 + 1.16667 NA intron (NM_004822, intron 2 of 6) MIR|SINE|MIR 64143 NM_004822 9423 Hs.660885 NM_004822 ENSG00000065320 NTN1 MRMV4|NTN1L netrin 1 protein-coding 266-9 chr16 21600610 21601086 + 1.16667 NA intron (NM_001077180, intron 1 of 4).2 intron (NM_001077180, intron 1 of 4).2 1271 NM_016025 51108 Hs.279583 NM_016025 ENSG00000197006 METTL9 CGI-81|DREV|DREV1|PAP1 methyltransferase like 9 protein-coding 228.167-13 chr21 39543105 39543471 + 1.16667 NA Intergenic LTR49-int|LTR|ERV1 69534 NR_026543 114041 Hs.375120 NM_153754 ENSG00000184809 B3GALT5-AS1 C21orf88 B3GALT5 antisense RNA 1 ncRNA 136.334-7 chr7 3146894 3147055 + 1.16667 NA intron (NR_126024, intron 3 of 3) intron (NR_126024, intron 3 of 3) 11599 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 183.167-35 chr3 122791595 122792033 + 1.16667 NA intron (NM_001320728, intron 1 of 6) L2a|LINE|L2 2017 NM_001320728 79663 Hs.29169 NM_024610 ENSG00000169087 HSPBAP1 PASS1 HSPB1 associated protein 1 protein-coding 147.667-52 chr4 46710060 46710277 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 199077 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 179.667-5 chr10 29313471 29313738 + 1.16667 NA Intergenic Intergenic 24534 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 208.667-9 chr11 97206580 97206815 + 1.16667 NA Intergenic Intergenic 698272 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 155.167-41 chr6 85674767 85674944 + 1.16667 NA Intergenic Intergenic 2513 NR_002743 26799 NR_002743 SNORD50A RNU50|U50 small nucleolar RNA, C/D box 50A snoRNA 164.833-2 chr1 43912042 43912302 + 1.16667 NA intron (NM_001270461, intron 8 of 8) L2b|LINE|L2 -21148 NM_057090 9048 Hs.632404 NM_003976 ENSG00000117407 ARTN ART|ENOVIN|EVN|NBN artemin protein-coding 255.334-3 chr5 15113870 15114145 + 1.16667 NA Intergenic MamRep4096|DNA|hAT-Tip100 152553 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 123-63 chr3 3486745 3486887 + 1.16667 NA Intergenic MLT1K|LTR|ERVL-MaLR -307099 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 142-78 chr5 125530773 125530998 + 1.16667 NA intron (NR_109887, intron 3 of 3) L1ME2z|LINE|L1 37624 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 211.167 chr1 54174798 54175161 + 1.16667 NA intron (NM_001353354, intron 6 of 6) intron (NM_001353354, intron 6 of 6) -21798 NM_201546 200008 NM_201546 ENSG00000157211 CDCP2 - CUB domain containing protein 2 protein-coding 183.833-19 chr19 31103234 31103607 + 1.16667 NA Intergenic L2c|LINE|L2 -64090 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 158.833-64 chrX 46618522 46618764 + 1.16667 NA intron (NM_001257291, intron 15 of 16) L1ME3A|LINE|L1 44878 NM_019886 56548 Hs.129955 NM_019886 ENSG00000147119 CHST7 C6ST-2|GST-5 carbohydrate sulfotransferase 7 protein-coding 145.834-2 chr18 50990752 50990880 + 1.16667 NA Intergenic Intergenic 22776 NM_018696 55520 Hs.657360 NM_018696 ENSG00000141642 ELAC1 D29 elaC ribonuclease Z 1 protein-coding 132.5-50 chr2 160588742 160588882 + 1.16667 NA Intergenic L1MA4|LINE|L1 -95005 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 343.333-3 chr4 41536188 41536656 + 1.16667 NA intron (NM_001289122, intron 3 of 25) intron (NM_001289122, intron 3 of 25) -1735 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 273.334 chr2 27063083 27063406 + 1.16667 NA intron (NR_104246, intron 11 of 15) L2a|LINE|L2 8410 NM_001134693 100128731 Hs.502948 NM_001134693 ENSG00000228474 OST4 - oligosaccharyltransferase complex subunit 4, non-catalytic protein-coding 134.667-19 chr12 10037161 10037340 + 1.16667 NA intron (NM_207345, intron 1 of 8) MER6|DNA|TcMar-Tigger 6568 NM_207345 283420 Hs.531189 NM_207345 ENSG00000197992 CLEC9A CD370|DNGR-1|DNGR1|UNQ9341 C-type lectin domain containing 9A protein-coding 131.334-10 chr8 117687444 117687637 + 1.16667 NA Intergenic Intergenic 166827 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 262.167-16 chr3 105360288 105360671 + 1.16667 NA Intergenic Intergenic -6234 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 291-14 chr7 75668886 75669304 + 1.16667 NA intron (NM_005338, intron 1 of 30) AluY|SINE|Alu 69846 NM_001243198 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 168-82 chr9 94861958 94862164 + 1.16667 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 52099 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 215-39 chr7 93164268 93164505 + 1.16667 NA Intergenic L1ME3Cz|LINE|L1 -16001 NM_001350085 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 200.834 chr1 81698410 81698669 + 1.16667 NA intron (NM_001366008, intron 3 of 26) intron (NM_001366008, intron 3 of 26) -1231 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 171.5-46 chr4 46221165 46221419 + 1.16667 NA Intergenic L1M3|LINE|L1 -97238 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 192.334-2 chr11 130860970 130861274 + 1.16667 NA intron (NR_125383, intron 2 of 5) intron (NR_125383, intron 2 of 5) 988 NR_125383 100507431 Hs.375101 NR_125383 LINC02551 - long intergenic non-protein coding RNA 2551 ncRNA 114.167-35 chr15 88563486 88563630 + 1.16667 NA Intergenic L1M5|LINE|L1 -16855 NR_135739 55070 Hs.655064 NM_017996 ENSG00000140543 DET1 - DET1 partner of COP1 E3 ubiquitin ligase protein-coding 291.334-2 chr12 39850154 39850692 + 1.16667 NA intron (NM_052885, intron 6 of 9) intron (NM_052885, intron 6 of 9) 224240 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 367.501-2 chr2 52036814 52037368 + 1.16667 NA intron (NR_135237, intron 7 of 10) MER4D1|LTR|ERV1 -333557 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 308.334-3 chr2 223667693 223668122 + 1.16667 NA Intergenic Intergenic -65546 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 225.334-2 chr11 28913021 28913346 + 1.16667 NA Intergenic Intergenic -435635 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 341.334-2 chr16 77438868 77439278 + 1.16667 NA Intergenic Intergenic -4039 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 155.167-37 chr4 142461817 142462180 + 1.16667 NA intron (NM_001331040, intron 3 of 25) L2c|LINE|L2 384537 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 272.833-3 chr10 117204818 117205331 + 1.16667 NA intron (NM_181840, intron 2 of 2) intron (NM_181840, intron 2 of 2) 7585 NM_181840 338567 Hs.449650 NM_181840 ENSG00000186795 KCNK18 K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK potassium two pore domain channel subfamily K member 18 protein-coding 136.834 chr1 192707538 192707701 + 1.16667 NA Intergenic MLT2B1|LTR|ERVL -8709 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 192.334-3 chr2 112623819 112624242 + 1.16667 NA Intergenic Intergenic 20150 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 178-15 chr13 68649332 68649560 + 1.16667 NA Intergenic Intergenic 235879 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 184.834-5 chr22 35217997 35218250 + 1.16667 NA intron (NR_126356, intron 1 of 5) MLT1H|LTR|ERVL-MaLR 12933 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 130.5-73 chr8 28453596 28453803 + 1.16667 NA intron (NM_001258211, intron 4 of 7) L2c|LINE|L2 36530 NM_172366 157574 Hs.741522 NM_172366 ENSG00000214050 FBXO16 FBX16 F-box protein 16 protein-coding 157.167-40 chr3 48852161 48852387 + 1.16667 NA TTS (NR_109996) TTS (NR_109996) 4337 NR_109996 100506637 Hs.634259 NR_109996 ENSG00000224424 PRKAR2A-AS1 - PRKAR2A antisense RNA 1 ncRNA 188.834-2 chr2 30725173 30725366 + 1.16667 NA intron (NM_144575, intron 22 of 22) intron (NM_144575, intron 22 of 22) 82177 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 260.167-7 chr14 49679682 49680007 + 1.16667 NA intron (NM_001348385, intron 2 of 18) intron (NM_001348385, intron 2 of 18) 8370 NM_001197331 5427 Hs.162777 NM_002692 ENSG00000100479 POLE2 DPE2 DNA polymerase epsilon 2, accessory subunit protein-coding 194-38 chr3 112974368 112974581 + 1.16667 NA intron (NM_138806, intron 1 of 7) intron (NM_138806, intron 1 of 7) 629 NM_138939 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 209-18 chr12 129513203 129513409 + 1.16667 NA intron (NM_133448, intron 3 of 8) MSTB2|LTR|ERVL-MaLR 304705 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 132-101 chr9 107911304 107911482 + 1.16667 NA Intergenic LTR16D|LTR|ERVL -421624 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 267.5-13 chr6 50434894 50435289 + 1.16667 NA Intergenic Intergenic -278453 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 140.834-6 chr6 51654721 51654891 + 1.16667 NA intron (NM_138694, intron 61 of 66) Tigger15a|DNA|TcMar-Tigger 32936 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 188.5-57 chr9 78481510 78481804 + 1.16667 NA Intergenic L1MCb|LINE|L1 184532 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 229-27 chr3 175246250 175246633 + 1.16667 NA intron (NR_046713, intron 1 of 2) intron (NR_046713, intron 1 of 2) 24655 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 240.333-30 chr8 86367794 86368208 + 1.16667 NA intron (NM_007013, intron 1 of 24) L2c|LINE|L2 25454 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 195.5-11 chr12 19314874 19315212 + 1.16667 NA intron (NM_001256787, intron 11 of 25) intron (NM_001256787, intron 11 of 25) 109718 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 123.833-13 chr11 133766485 133766654 + 1.16667 NA Intergenic L1MD1|LINE|L1 43807 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 157.833-35 chr2 17676402 17676686 + 1.16667 NA intron (NM_024624, intron 24 of 26) L1M4|LINE|L1 77266 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 133.333-15 chr10 75442331 75442564 + 1.16667 NA intron (NM_001305581, intron 2 of 6) L1M3|LINE|L1 10823 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 155-30 chr18 1239400 1239927 + 1.16667 NA Intergenic Intergenic 119966 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 137.5-17 chr10 104389110 104389279 + 1.16667 NA intron (NM_001008723, intron 9 of 17) intron (NM_001008723, intron 9 of 17) 35361 NM_001008723 159686 Hs.253576 NM_001008723 ENSG00000120051 CFAP58 C10orf80|CCDC147|bA127L20.4|bA127L20.5|bA554P13.1 cilia and flagella associated protein 58 protein-coding 293.667-2 chr10 37459084 37459389 + 1.16667 NA Intergenic Intergenic 143695 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 195.667-17 chr17 60516397 60516916 + 1.16667 NA intron (NM_006380, intron 1 of 12) L1ME3A|LINE|L1 9584 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 270.167-11 chr2 217009280 217009842 + 1.16667 NA Intergenic MIR|SINE|MIR 138789 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 133.167-19 chr14 49639645 49639912 + 1.16667 NA Intergenic Intergenic -4548 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 246.167-30 chr8 108011305 108011930 + 1.16667 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 70322 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 230.167-17 chr4 5079202 5079520 + 1.16667 NA intron (NM_001306082, intron 1 of 12) L1M5|LINE|L1 27881 NM_001345969 55351 Hs.133062 NM_018401 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 171.167-50 chr5 82011283 82011542 + 1.16667 NA intron (NM_031482, intron 2 of 7) L2c|LINE|L2 39389 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 269.5-10 chr18 3556604 3556889 + 1.16667 NA intron (NM_001242762, intron 6 of 9) L1MC1|LINE|L1 -37368 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 266.167-5 chr10 44871548 44871901 + 1.16667 NA intron (NR_033842, intron 2 of 7) intron (NR_033842, intron 2 of 7) -39592 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 253.501-2 chr14 64497117 64497384 + 1.16667 NA intron (NM_001354685, intron 2 of 4) intron (NM_001354685, intron 2 of 4) 742 NM_001354687 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 280.667-4 chr11 60445850 60446144 + 1.16667 NA intron (NM_023945, intron 4 of 4) L1ME3G|LINE|L1 -9812 NM_021950 931 Hs.712553 NM_021950 ENSG00000156738 MS4A1 B1|Bp35|CD20|CVID5|LEU-16|MS4A2|S7 membrane spanning 4-domains A1 protein-coding 171.5-14 chr12 77221479 77221676 + 1.16667 NA Intergenic Intergenic -156008 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 348-11 chrX 63076537 63077061 + 1.16667 NA Intergenic AluSx|SINE|Alu 274533 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 308.5-9 chr4 151875442 151875965 + 1.16667 NA Intergenic MIRb|SINE|MIR -114680 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 228.667-6 chr10 45589304 45589545 + 1.16667 NA intron (NM_145021, intron 1 of 6) intron (NM_145021, intron 1 of 6) 5482 NM_145021 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 180.334-11 chrX 75978189 75978388 + 1.16667 NA Intergenic L1MA4|LINE|L1 -193034 NM_138703 139599 Hs.356869 NM_138703 ENSG00000186675 MAGEE2 HCA3 MAGE family member E2 protein-coding 123-88 chr8 136682689 136682897 + 1.16667 NA intron (NR_147196, intron 2 of 5) L1MD2|LINE|L1 151995 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 179.834-7 chr16 64618886 64619048 + 1.16667 NA Intergenic Intergenic 503096 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 134.667-5 chr1 215320346 215320497 + 1.16667 NA Intergenic Intergenic 237684 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 245.5-6 chr15 97481130 97481462 + 1.16667 NA intron (NR_120324, intron 2 of 4) L1M5|LINE|L1 40515 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 223.5-32 chr8 81403079 81403726 + 1.16667 NA Intergenic MLT1J|LTR|ERVL-MaLR 44037 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 202-6 chr12 26111498 26111930 + 1.16667 NA Intergenic L2b|LINE|L2 13323 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 128.334-6 chr17 34914845 34915164 + 1.16667 NA Intergenic L1M4|LINE|L1 46456 NM_006584 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 307.334-5 chr4 30656505 30656800 + 1.16667 NA Intergenic L1MA4A|LINE|L1 -63717 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 358.501-3 chr5 61379503 61380245 + 1.16667 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 47616 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 261.667-3 chr10 44120522 44120777 + 1.16667 NA Intergenic MIR|SINE|MIR -172101 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 183.834-5 chr3 20898448 20898646 + 1.16667 NA Intergenic L1MD2|LINE|L1 -507179 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 146.5-72 chr5 149291740 149292252 + 1.16667 NA intron (NM_152406, intron 1 of 18) intron (NM_152406, intron 1 of 18) 20137 NM_001146337 134265 Hs.62930 NM_152406 ENSG00000157510 AFAP1L1 - actin filament associated protein 1 like 1 protein-coding 167.667-59 chr3 83071943 83072170 + 1.16667 NA Intergenic L1PA16|LINE|L1 1085914 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 193.5-17 chr16 83177209 83177400 + 1.16667 NA intron (NM_001220492, intron 5 of 5) intron (NM_001220492, intron 5 of 5) -187006 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 191.167-2 chr11 112031166 112031459 + 1.16667 NA intron (NM_001931, intron 4 of 13) intron (NM_001931, intron 4 of 13) 6498 NM_001931 1737 Hs.335551 NM_001931 ENSG00000150768 DLAT DLTA|E2|PDC-E2|PDCE2 dihydrolipoamide S-acetyltransferase protein-coding 200.833-19 chr20 17620828 17621164 + 1.16667 NA intron (NM_001365613, intron 16 of 24) intron (NM_001365613, intron 16 of 24) 50921 NM_001011546 11034 Hs.304192 NM_006870 ENSG00000125868 DSTN ACTDP|ADF|HEL32|bA462D18.2 destrin, actin depolymerizing factor protein-coding 234.833-10 chr17 30736920 30737295 + 1.16667 NA intron (NR_024187, intron 3 of 7) AluSq10|SINE|Alu 27499 NR_144395 440423 Hs.628886 NR_024187 SUZ12P1 SUZ12P SUZ12 pseudogene 1 pseudo 229.5-11 chr17 28618789 28619143 + 1.16667 NA exon (NM_001363828, exon 31 of 38) exon (NM_001363828, exon 31 of 38) -4781 NM_001174103 124923 Hs.729077 NM_144610 ENSG00000167524 RSKR SGK494 ribosomal protein S6 kinase related protein-coding 197.667-16 chr14 25261031 25261645 + 1.16667 NA Intergenic AluJo|SINE|Alu -211041 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 220.834-3 chr6 78703607 78703933 + 1.16667 NA Intergenic Intergenic -163781 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 272.667-13 chr4 33584137 33584578 + 1.16667 NA Intergenic MER57C2|LTR|ERV1 455536 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 215.167-15 chr2 169544723 169544923 + 1.16667 NA exon (NM_001322046, exon 9 of 15) exon (NM_001322046, exon 9 of 15) 29042 NM_024622 79675 Hs.529276 NM_024622 ENSG00000138399 FASTKD1 - FAST kinase domains 1 protein-coding 319.333-2 chr10 54055732 54056103 + 1.16667 NA intron (NM_001354411, intron 19 of 34) LTR88b|LTR|Gypsy? -430313 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 189.5-9 chr11 47908193 47908384 + 1.16667 NA Intergenic Intergenic -59744 NM_001318399 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 164.5 chr1 98814186 98814453 + 1.16667 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR 152598 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 274.334 chr1 240077873 240078133 + 1.16667 NA Intergenic THE1B-int|LTR|ERVL-MaLR -13880 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 126.834 chr1 85836838 85836987 + 1.16667 NA intron (NM_152890, intron 43 of 59) intron (NM_152890, intron 43 of 59) -128479 NM_001170670 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 240.667-30 chr4 73497576 73497910 + 1.16667 NA exon (NM_001133, exon 10 of 15) exon (NM_001133, exon 10 of 15) -11060 NR_046377 728040 Hs.640574 NR_046377 ENSG00000250436 LINC02499 - long intergenic non-protein coding RNA 2499 ncRNA 249.667-42 chr7 94586851 94587309 + 1.16667 NA intron (NM_001346717, intron 9 of 9) intron (NM_001346717, intron 9 of 9) 69053 NM_001346713 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 315.334 chr14 78291341 78291790 + 1.16667 NA intron (NM_001366425, intron 3 of 19) intron (NM_001366425, intron 3 of 19) -112154 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 304.167-5 chr4 61359965 61360555 + 1.16667 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 158088 NM_001371342 164.167-20 chr14 68068107 68068364 + 1.16667 NA intron (NM_133509, intron 7 of 10) L1MB7|LINE|L1 244643 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 248.5-20 chr8 4103269 4103637 + 1.16667 NA intron (NM_033225, intron 3 of 69) MIRc|SINE|MIR 891461 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 265.5-10 chr3 120540797 120541169 + 1.16667 NA Intergenic L1PB2|LINE|L1 -55353 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 163.667-50 chr3 81910698 81910992 + 1.16667 NA Intergenic Intergenic -75297 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 150.5-77 chr8 80973719 80974112 + 1.16667 NA 3' UTR (NM_018440, exon 9 of 9) 3' UTR (NM_018440, exon 9 of 9) -99134 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 207-54 chr8 126331803 126332075 + 1.16667 NA Intergenic MER96|DNA|hAT-Tip100 6444 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 312.834-3 chr14 46354036 46354509 + 1.16667 NA intron (NR_102702, intron 3 of 3) L1M5|LINE|L1 -117087 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 196.333-2 chr1 186521811 186522094 + 1.16667 NA Intergenic Intergenic -60838 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 185.167-21 chr2 30903735 30904013 + 1.16667 NA Intergenic Intergenic -96428 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 182.334-5 chr3 64418804 64418977 + 1.16667 NA Intergenic Intergenic -142456 NR_110151 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 342.334-2 chr19 35281701 35282125 + 1.16667 NA promoter-TSS (NM_021175) promoter-TSS (NM_021175) -615 NM_021175 57817 Hs.8821 NM_021175 ENSG00000105697 HAMP HEPC|HFE2B|LEAP1|PLTR hepcidin antimicrobial peptide protein-coding 313.833-5 chr5 78505017 78505577 + 1.16667 NA intron (NM_005779, intron 4 of 4) intron (NM_005779, intron 4 of 4) 143475 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 228.5-36 chr8 69362301 69362701 + 1.16667 NA Intergenic MER45B|DNA|hAT-Tip100 85743 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 117.333-98 chr6 169306487 169306628 + 1.16667 NA Intergenic L1PB4|LINE|L1 -52443 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 339.5-5 chr2 160200035 160200550 + 1.16667 NA promoter-TSS (NM_001282389) promoter-TSS (NM_001282389) -20 NM_001282355 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 223.334-2 chr12 1128729 1129002 + 1.16667 NA intron (NR_027948, intron 6 of 19) L1MEd|LINE|L1 101117 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 219.334-5 chr2 113168871 113169072 + 1.16667 NA Intergenic Intergenic -5000 NM_012455 23550 Hs.516306 NM_012455 ENSG00000125637 PSD4 EFA6B|TIC pleckstrin and Sec7 domain containing 4 protein-coding 128.333-8 chr1 174720680 174720864 + 1.16667 NA intron (NM_001366451, intron 2 of 12) L1MB7|LINE|L1 19777 NM_001366452 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 358.834 chr1 42845050 42845475 + 1.16667 NA TTS (NM_018538) TTS (NM_018538) -1311 NM_015911 51058 Hs.20879 NM_015911 ENSG00000164011 ZNF691 Zfp691 zinc finger protein 691 protein-coding 129.667-21 chr12 33290832 33291011 + 1.16667 NA Intergenic LTR8B|LTR|ERV1 148898 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 142.834-7 chr7 101803077 101803246 + 1.16667 NA Intergenic AluJo|SINE|Alu -12846 NM_001202546 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 211.667-26 chr3 52258705 52259250 + 1.16667 NA intron (NM_025222, intron 7 of 8) intron (NM_025222, intron 7 of 8) 9384 NR_029660 406890 NR_029660 ENSG00000199150 MIRLET7G LET7G|MIRNLET7G|hsa-let-7g|let-7g microRNA let-7g ncRNA 219.167-2 chr1 191737566 191737884 + 1.16667 NA Intergenic Intergenic -420737 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 204.333-26 chr2 63589621 63589940 + 1.16667 NA intron (NM_001199111, intron 1 of 8) intron (NM_001199111, intron 1 of 8) 629 NM_001199111 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 212.5-30 chr8 84092731 84093009 + 1.16667 NA Intergenic L1MA4|LINE|L1 -89917 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 206.334-5 chr2 129547834 129548096 + 1.16667 NA Intergenic L1ME2|LINE|L1 -274074 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 293.5-7 chr2 169292122 169292551 + 1.16667 NA exon (NM_004525, exon 7 of 79) exon (NM_004525, exon 7 of 79) 70198 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 135-13 chr11 14377444 14377618 + 1.16667 NA Intergenic Intergenic -13025 NM_001177314 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 129.667-8 chr10 66525823 66525955 + 1.16667 NA intron (NM_001127384, intron 10 of 17) L1MB4|LINE|L1 -400147 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 208.333-9 chr11 86860942 86861221 + 1.16667 NA intron (NR_120592, intron 2 of 2) SATR1|Satellite|Satellite -3127 NR_045004 8587 Hs.741959 NR_045004 ENSG00000255203 OR7E2P OR11-6|OR7E143P|OR7E51P|OR7E52P|OR7F2P|OST245|hg94 olfactory receptor family 7 subfamily E member 2 pseudogene pseudo 243.667-25 chr4 175613588 175614222 + 1.16667 NA Intergenic L1ME2|LINE|L1 173771 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 160.167-66 chrX 87989669 87989969 + 1.16667 NA Intergenic Intergenic 472017 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 142.167-85 chr9 16397511 16397763 + 1.16667 NA Intergenic Intergenic -121324 NM_001364979 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 217.667-50 chr8 127442651 127442916 + 1.16667 NA TTS (NR_024393) TTS (NR_024393) 26958 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 227.5-3 chr1 225543050 225543317 + 1.16667 NA intron (NM_001008493, intron 3 of 14) intron (NM_001008493, intron 3 of 14) 109940 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 374-3 chr2 15752683 15753193 + 1.16667 NA Intergenic Intergenic 62156 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 147.167-41 chr22 28604847 28605004 + 1.16667 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 74940 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 216-30 chr7 30706643 30706906 + 1.16667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -6671 NM_001202475 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 267.333-17 chr3 3640892 3641253 + 1.16667 NA Intergenic L1PA12|LINE|L1 -158359 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 223.834-3 chr16 6012327 6012585 + 1.16667 NA Intergenic MER20|DNA|hAT-Charlie -6568 NM_001364800 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 261.167 chr1 83649664 83650009 + 1.16667 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 203782 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 311.001-2 chr18 11482345 11482902 + 1.16667 NA Intergenic Intergenic -5947 NR_110779 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 115.167-55 chr2 60968070 60968246 + 1.16667 NA intron (NM_144709, intron 5 of 17) intron (NM_144709, intron 5 of 17) 49054 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 138.5-81 chr8 122256879 122257081 + 1.16667 NA Intergenic Intergenic 311664 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 386.168 chr2 196834083 196834640 + 1.16667 NA 3' UTR (NM_024989, exon 27 of 27) 3' UTR (NM_024989, exon 27 of 27) -24085 NM_213608 401027 Hs.245666 NM_213608 ENSG00000187944 C2orf66 IIDS6411|UNQ6411 chromosome 2 open reading frame 66 protein-coding 273.5-17 chr4 30499346 30499654 + 1.16667 NA Intergenic Intergenic -220869 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 185.5-56 chrX 138483934 138484220 + 1.16667 NA Intergenic Intergenic 183716 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 201.5-5 chr10 88238438 88238875 + 1.16667 NA Intergenic Intergenic 344662 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 202.334-8 chr8 38816931 38817172 + 1.16667 NA intron (NM_001352791, intron 1 of 11) MER21C|LTR|ERVL 11601 NM_001352802 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 229.834-4 chr12 25913973 25914332 + 1.16667 NA Intergenic AluJb|SINE|Alu -40073 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 130.334-3 chr20 35355118 35355239 + 1.16667 NA intron (NM_001184977, intron 4 of 7) MER6A|DNA|TcMar-Tigger 56795 NM_018244 55245 Hs.726290 NM_018244 ENSG00000101019 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 194.834 chr11 66682162 66682421 + 1.16667 NA TTS (NM_006946) TTS (NM_006946) -4404 NM_001286135 83759 Hs.618713 NM_031492 ENSG00000173914 RBM4B RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B RNA binding motif protein 4B protein-coding 166-29 chr18 52375703 52375974 + 1.16667 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 35641 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 164.334 chr1 189046074 189046261 + 1.16667 NA Intergenic Intergenic 1429843 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 116.167-71 chr7 26728617 26728737 + 1.16667 NA intron (NM_003930, intron 6 of 12) intron (NM_003930, intron 6 of 12) 90806 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 238.5-31 chr8 5322664 5323103 + 1.16667 NA Intergenic LTR16E1|LTR|ERVL -327969 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 315.834-7 chr7 11745802 11746251 + 1.16667 NA intron (NM_015204, intron 1 of 26) L1PA4|LINE|L1 86172 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 234.167-2 chr10 20869296 20869550 + 1.16667 NA intron (NM_006393, intron 6 of 27) intron (NM_006393, intron 6 of 27) 28179 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 270.5-11 chr5 99814600 99815162 + 1.16667 NA Intergenic Intergenic 280891 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 271.333 chr1 107370332 107370807 + 1.16667 NA intron (NM_001113226, intron 2 of 6) L1PB1|LINE|L1 222500 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 205.334-7 chr3 49414610 49414917 + 1.16667 NA intron (NM_022171, intron 2 of 2) intron (NM_022171, intron 2 of 2) 2557 NM_022171 6988 Hs.517962 NM_022171 ENSG00000145022 TCTA - T cell leukemia translocation altered protein-coding 198.667-55 chr8 98076718 98076957 + 1.16667 NA intron (NM_001170806, intron 1 of 1) MER5A1|DNA|hAT-Charlie 12269 NM_173549 203111 Hs.171455 NM_173549 ENSG00000177459 ERICH5 C8orf47 glutamate rich 5 protein-coding 177.667-68 chr7 109066123 109066371 + 1.16667 NA Intergenic L1M2|LINE|L1 -181660 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 260-12 chr2 102767513 102767896 + 1.16667 NA intron (NM_001321346, intron 3 of 3) intron (NM_001321346, intron 3 of 3) 5673 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 361.833 chr2 30680758 30681335 + 1.16667 NA Intergenic Intergenic 126400 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 255.5-9 chr17 60773637 60773977 + 1.16667 NA intron (NM_001330413, intron 6 of 25) AluJb|SINE|Alu 95956 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 284.167-11 chr2 145998290 145998576 + 1.16667 NA Intergenic L1M4b|LINE|L1 -588624 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 190.167 chr1 21380778 21381088 + 1.16667 NA Intergenic MER117|DNA|hAT-Charlie -35429 NM_001113348 1889 Hs.195080 NM_001397 ENSG00000117298 ECE1 ECE endothelin converting enzyme 1 protein-coding 122.167-77 chr9 90868645 90868791 + 1.16667 NA intron (NM_001174167, intron 7 of 13) L1ME4b|LINE|L1 41298 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 206.333-16 chr2 67990255 67990604 + 1.16667 NA Intergenic Intergenic 72575 NM_001190265 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 180.5-17 chr14 60781391 60781687 + 1.16667 NA intron (NM_001177963, intron 1 of 6) FLAM_C|SINE|Alu 46778 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 306.167-6 chr9 25332786 25333308 + 1.16667 NA Intergenic MER5A|DNA|hAT-Charlie 345811 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 359.667-2 chr2 81538742 81539221 + 1.16667 NA Intergenic AluSc|SINE|Alu -72035 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 142-10 chr1 236864041 236864254 + 1.16667 NA intron (NM_000254, intron 22 of 32) intron (NM_000254, intron 22 of 32) 68855 NM_001291940 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 129.834-9 chr7 36787596 36787852 + 1.16667 NA Intergenic MER3|DNA|hAT-Charlie -63175 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 151-54 chr4 67452959 67453233 + 1.16667 NA Intergenic MSTA-int|LTR|ERVL-MaLR -31096 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 242.334-5 chr9 32490776 32491108 + 1.16667 NA intron (NM_014314, intron 5 of 17) intron (NM_014314, intron 5 of 17) 35254 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIG1|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 145-41 chr18 49441708 49441867 + 1.16667 NA intron (NM_001353210, intron 1 of 16) intron (NM_001353210, intron 1 of 16) 18858 NM_017653 54808 Hs.162996 NM_017653 ENSG00000141627 DYM DMC|SMC dymeclin protein-coding 279-10 chr2 98108275 98108794 + 1.16667 NA intron (NR_144297, intron 2 of 18) L1MDa|LINE|L1 21367 NM_144992 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 163.834-6 chr4 184233420 184233595 + 1.16667 NA Intergenic Intergenic -15634 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 116.334 chr10 5861800 5862109 + 1.16667 NA 3' UTR (NM_019046, exon 8 of 8) 3' UTR (NM_019046, exon 8 of 8) -27618 NM_001258452 84893 Hs.498543 NM_032807 ENSG00000134452 FBH1 FBXO18|Fbx18|hFBH1 F-box DNA helicase 1 protein-coding 117.167-80 chr6 36465579 36465767 + 1.16667 NA intron (NR_104481, intron 1 of 3) intron (NR_104481, intron 1 of 3) 22673 NM_001286579 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 376.167 chr10 85083717 85084381 + 1.16667 NA Intergenic Intergenic 114856 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 163.5-54 chr4 105192377 105192621 + 1.16667 NA intron (NM_001127208, intron 2 of 10) MIRb|SINE|MIR 45814 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 215.334-2 chr4 55001956 55002321 + 1.16667 NA Intergenic Intergenic 123457 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 338-11 chr5 16038539 16039087 + 1.16667 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat 103631 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 216.334 chr1 235465624 235465853 + 1.16667 NA intron (NM_152490, intron 6 of 11) intron (NM_152490, intron 6 of 11) 38714 NM_001277155 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 125.5-35 chr18 68680037 68680184 + 1.16667 NA intron (NM_019022, intron 14 of 15) intron (NM_019022, intron 14 of 15) 34998 NM_001350517 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 184.333-54 chr6 153280128 153280446 + 1.16667 NA Intergenic Intergenic -149005 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 148.667-52 chr4 74610245 74610410 + 1.16667 NA Intergenic MIRb|SINE|MIR 165191 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 190.333-58 chr8 119729446 119729688 + 1.16667 NA Intergenic L1M2|LINE|L1 -56177 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 249.167-10 chr4 59596077 59596337 + 1.16667 NA Intergenic L1MA3|LINE|L1 582634 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 213.167-29 chr7 96197023 96197253 + 1.16667 NA intron (NM_001160210, intron 5 of 17) intron (NM_001160210, intron 5 of 17) 22618 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 211.167-17 chr20 60570302 60570608 + 1.16667 NA Intergenic L1MB5|LINE|L1 5893 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 296.834 chr2 133984908 133985281 + 1.16667 NA Intergenic L1ME4c|LINE|L1 -134841 NM_001371457 360.5-4 chr14 60148816 60149401 + 1.16667 NA TTS (NM_001330177) TTS (NM_001330177) 16290 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 283.167 chr11 93282748 93283217 + 1.16667 NA Intergenic Intergenic -47735 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 170.834-11 chr9 86571848 86572023 + 1.16667 NA Intergenic L1MEd|LINE|L1 -217525 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 236.167-4 chr11 57384170 57384425 + 1.16667 NA Intergenic Intergenic -3147 NM_006093 10394 Hs.251386 NM_006093 ENSG00000156575 PRG3 MBP2|MBPH proteoglycan 3, pro eosinophil major basic protein 2 protein-coding 190-21 chr16 63373893 63374247 + 1.16667 NA Intergenic Intergenic -1337632 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 153.167-44 chr5 173635262 173635418 + 1.16667 NA Intergenic MIRb|SINE|MIR -18677 NM_001159651 91272 Hs.425091 NM_138369 ENSG00000145919 BOD1 FAM44B biorientation of chromosomes in cell division 1 protein-coding 159.834-6 chr7 53979150 53979431 + 1.16667 NA Intergenic L1M5|LINE|L1 -167359 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 150.834-3 chr5 52487511 52487698 + 1.16667 NA Intergenic Intergenic -300312 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 129.167-81 chr8 88766838 88766998 + 1.16667 NA Intergenic Intergenic -439435 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 240.667-14 chr15 72716597 72716936 + 1.16667 NA intron (NM_033028, intron 5 of 15) intron (NM_033028, intron 5 of 15) 30559 NM_033028 585 Hs.208681 NM_033028 ENSG00000140463 BBS4 - Bardet-Biedl syndrome 4 protein-coding 146.5-46 chr2 115765558 115765854 + 1.16667 NA intron (NM_001321912, intron 13 of 25) L2c|LINE|L2 421891 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 185.834-6 chr4 155343393 155343616 + 1.16667 NA 3' UTR (NM_001039580, exon 14 of 14) 3' UTR (NM_001039580, exon 14 of 14) -10712 NR_125937 102724776 Hs.61271 NR_125937 ENSG00000250910 LOC102724776 - uncharacterized LOC102724776 ncRNA 296-14 chr7 8235043 8235530 + 1.16667 NA intron (NM_001350838, intron 2 of 11) intron (NM_001350838, intron 2 of 11) 26766 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 119.167-96 chr8 101957702 101957841 + 1.16667 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -26661 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 168.834-9 chr8 137656251 137656411 + 1.16667 NA Intergenic MIR|SINE|MIR -242743 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 115.333-82 chr5 38164032 38164333 + 1.16667 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 15702 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 169.667-75 chr8 119735003 119735309 + 1.16667 NA intron (NM_003184, intron 25 of 25) intron (NM_003184, intron 25 of 25) -61766 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 130-97 chr7 68252796 68252951 + 1.16667 NA Intergenic L1MB7|LINE|L1 232620 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 305.334-8 chr8 86259580 86260076 + 1.16667 NA Intergenic Intergenic -29447 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 301-3 chr4 116890815 116891110 + 1.16667 NA Intergenic Intergenic 194614 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 150.333-94 chr7 39337318 39337550 + 1.16667 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) -8300 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 285.667-13 chr8 129159644 129160218 + 1.16667 NA Intergenic L1M6|LINE|L1 81309 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 202.167-25 chr3 82034974 82035306 + 1.16667 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 48998 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 185.5-22 chr2 114443309 114443875 + 1.16667 NA intron (NM_001321910, intron 1 of 26) intron (NM_001321910, intron 1 of 26) 951 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 197.834-10 chr6 35596825 35597063 + 1.16667 NA intron (NM_001145775, intron 7 of 11) intron (NM_001145775, intron 7 of 11) 67845 NR_049873 100847048 NR_049873 ENSG00000265527 MIR5690 - microRNA 5690 ncRNA 251-9 chr14 73997045 73997339 + 1.16667 NA intron (NM_001330189, intron 3 of 16) intron (NM_001330189, intron 3 of 16) 22096 NM_001330189 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 154-51 chr3 81320589 81320823 + 1.16667 NA Intergenic Intergenic 326838 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 335.501 chr4 97168104 97168496 + 1.16667 NA Intergenic MLT1F2|LTR|ERVL-MaLR -198626 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 122.167-67 chr8 3209924 3210101 + 1.16667 NA intron (NM_033225, intron 30 of 69) intron (NM_033225, intron 30 of 69) -481561 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 276.167-15 chr9 97035210 97035838 + 1.16667 NA intron (NM_001201575, intron 6 of 7) intron (NM_001201575, intron 6 of 7) 3618 NM_001333 1515 Hs.610096 NM_001333 ENSG00000136943 CTSV CATL2|CTSL2|CTSU cathepsin V protein-coding 165.833-25 chr16 72612098 72612386 + 1.16667 NA intron (NR_159372, intron 1 of 7) intron (NR_159372, intron 1 of 7) 52728 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 195.167-32 chr6 68655685 68655910 + 1.16667 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 20515 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 248.667-26 chrX 133299808 133300119 + 1.16667 NA TTS (NM_001448) TTS (NM_001448) -81609 NM_016521 51270 NM_016521 ENSG00000183434 TFDP3 CT30|DP4|HCA661 transcription factor Dp family member 3 protein-coding 240.334-11 chrX 28387454 28387766 + 1.16667 NA Intergenic L1MB2|LINE|L1 108053 NR_106750 102465140 NR_106750 ENSG00000277569 MIR6134 hsa-mir-6134 microRNA 6134 ncRNA 264.667-4 chr10 36497350 36497686 + 1.16667 NA Intergenic MIRb|SINE|MIR -628339 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 185.167-26 chr3 102718117 102718348 + 1.16667 NA Intergenic L1MA4A|LINE|L1 283217 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 221.5-26 chr4 51859787 51860034 + 1.16667 NA intron (NM_001287757, intron 2 of 11) intron (NM_001287757, intron 2 of 11) 16331 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 238.5-19 chr22 28582929 28583409 + 1.16667 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 96696 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 226.5-28 chr5 144198504 144198907 + 1.16667 NA intron (NM_020768, intron 2 of 3) intron (NM_020768, intron 2 of 3) -6686 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 246.834-5 chr6 6863800 6864154 + 1.16667 NA Intergenic Intergenic -241151 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 171.334-4 chr14 39863246 39863493 + 1.16667 NA Intergenic Intergenic -430869 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 136.667-19 chr13 83157988 83158209 + 1.16667 NA Intergenic Intergenic 724295 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 200.167-38 chr5 2946337 2946679 + 1.16667 NA Intergenic Intergenic 28654 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 192.834-7 chr9 80203043 80203245 + 1.16667 NA Intergenic L1MEg|LINE|L1 228121 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 115.167-9 chr1 105433080 105433234 + 1.16667 NA Intergenic Intergenic 185778 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 192.834-6 chr5 138947865 138948124 + 1.16667 NA intron (NM_022464, intron 9 of 9) intron (NM_022464, intron 9 of 9) 72594 NM_001323988 1495 Hs.445981 NM_001903 ENSG00000044115 CTNNA1 CAP102|MDPT2 catenin alpha 1 protein-coding 153.334-7 chr5 27072285 27072710 + 1.16667 NA Intergenic L1PA14|LINE|L1 -33911 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 182.5-21 chr2 58563631 58563887 + 1.16667 NA intron (NR_033873, intron 1 of 13) (AATG)n|Simple_repeat|Simple_repeat 43006 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 199.833-9 chr14 60015137 60015379 + 1.16667 NA intron (NR_075071, intron 23 of 32) L1MDa|LINE|L1 -76653 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 207.667-24 chr2 211765447 211765864 + 1.16667 NA intron (NM_001042599, intron 4 of 26) intron (NM_001042599, intron 4 of 26) 660705 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 411.334 chr10 81812310 81812793 + 1.16667 NA Intergenic L1MC1|LINE|L1 -62643 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 153.333-24 chr16 66796978 66797150 + 1.16667 NA intron (NM_001136505, intron 2 of 18) MIRb|SINE|MIR 4556 NM_001136505 283847 Hs.376505 NM_173616 ENSG00000249961 TERB1 CCDC79 telomere repeat binding bouquet formation protein 1 protein-coding 251.5-22 chr8 17234818 17235216 + 1.16667 NA intron (NM_013354, intron 4 of 6) intron (NM_013354, intron 4 of 6) 11441 NM_001322089 29883 Hs.587465 NM_013354 ENSG00000198791 CNOT7 CAF-1|CAF1|Caf1a|hCAF-1 CCR4-NOT transcription complex subunit 7 protein-coding 291.167-8 chr6 71858206 71858676 + 1.16667 NA Intergenic L1MC3|LINE|L1 -28262 NM_014989 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 118.834-7 chr2 105342728 105342857 + 1.16667 NA intron (NM_001286537, intron 2 of 4) intron (NM_001286537, intron 2 of 4) 5252 NM_001286537 79074 Hs.549577 NM_024093 ENSG00000135974 C2orf49 asw chromosome 2 open reading frame 49 protein-coding 267.667-19 chr6 65578593 65578998 + 1.16667 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 1009 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 161.5-20 chr19 29242754 29243047 + 1.16667 NA Intergenic Intergenic -29749 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 211.834 chr16 53476519 53476827 + 1.16667 NA intron (NM_001323609, intron 17 of 20) L1MB5|LINE|L1 26536 NM_022476 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 179-15 chr15 80085804 80086033 + 1.16667 NA intron (NM_001242912, intron 2 of 6) Tigger3a|DNA|TcMar-Tigger -12498 NM_001242919 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 122.334-2 chr14 54454719 54454837 + 1.16667 NA Intergenic Intergenic -13404 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 254.167-8 chr2 219969617 219969916 + 1.16667 NA Intergenic L1ME2|LINE|L1 -63201 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 272.667-10 chr3 122372885 122373245 + 1.16667 NA intron (NM_001017928, intron 1 of 4) (ATT)n|Simple_repeat|Simple_repeat 10166 NM_001017928 131076 Hs.220594 NM_001017928 ENSG00000160124 CCDC58 - coiled-coil domain containing 58 protein-coding 297.334-2 chr8 81406420 81406888 + 1.16667 NA Intergenic MER5A1|DNA|hAT-Charlie 40785 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 265.334-11 chr2 220061400 220061838 + 1.16667 NA Intergenic Intergenic -155054 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 205.167-37 chr6 144399066 144399270 + 1.16667 NA intron (NM_007124, intron 1 of 73) intron (NM_007124, intron 1 of 73) -6487 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 158.5-41 chr2 136874154 136874388 + 1.16667 NA intron (NM_001316349, intron 1 of 27) MIRb|SINE|MIR 108726 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 248.667-6 chr11 88081929 88082183 + 1.16667 NA Intergenic L1ME1|LINE|L1 93387 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 190.167-38 chr5 173304517 173304776 + 1.16667 NA TTS (NR_162132) TTS (NR_162132) 916 NR_162132 113219469 NR_162132 MIR12118 - microRNA 12118 ncRNA 124.667-39 chr15 59461258 59461520 + 1.16667 NA intron (NM_152450, intron 3 of 8) AluJb|SINE|Alu 23203 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 129.167-49 chr3 107832694 107832876 + 1.16667 NA Intergenic Intergenic 45283 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 266.833-3 chr16 47569589 47569901 + 1.16667 NA intron (NM_001031835, intron 8 of 31) AluSz|SINE|Alu 108414 NM_001031835 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 146.5-6 chr1 204031893 204032057 + 1.16667 NA TTS (NR_027902) TTS (NR_027902) 9289 NR_027902 284573 Hs.406979 NR_027902 ENSG00000176754 LINC00303 C1orf157|NCRNA00303 long intergenic non-protein coding RNA 303 ncRNA 131.834-6 chr4 63826023 63826237 + 1.16667 NA Intergenic L1M2|LINE|L1 583320 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 233.833-19 chr8 134144189 134144622 + 1.16667 NA Intergenic L3|LINE|CR1 257909 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 330.334-4 chr15 57261244 57261592 + 1.16667 NA intron (NM_207038, intron 15 of 19) intron (NM_207038, intron 15 of 19) 17239 NR_145748 109616990 NR_145748 ENSG00000239035 SNORD13D - small nucleolar RNA, C/D box 13D snoRNA 245.5-31 chr9 25582673 25583034 + 1.16667 NA Intergenic Intergenic 96005 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 220.001 chr4 38799038 38799277 + 1.16667 NA intron (NM_003263, intron 3 of 3) MLT1D|LTR|ERVL-MaLR 5634 NM_003263 7096 Hs.621817 NM_003263 ENSG00000174125 TLR1 CD281|TIL|TIL. LPRS5|rsc786 toll like receptor 1 protein-coding 221.5-6 chr10 86898181 86898431 + 1.16667 NA intron (NM_004329, intron 5 of 12) (TA)n|Simple_repeat|Simple_repeat -57453 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 343.667-3 chr20 7589770 7590218 + 1.16667 NA Intergenic Intergenic 218386 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 122.667-98 chr8 122551278 122551411 + 1.16667 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 17300 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 176.667-42 chr2 228022382 228022598 + 1.16667 NA intron (NM_030623, intron 5 of 10) MER67C|LTR|ERV1 150859 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 206.5-38 chr8 123319027 123319325 + 1.16667 NA TTS (NM_014109) TTS (NM_014109) -28858 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 126.667-91 chr7 83101433 83101572 + 1.16667 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 61382 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 243.334-4 chr7 91783767 91784178 + 1.16667 NA Intergenic Intergenic 96730 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 183.167-61 chr9 109019245 109019422 + 1.16667 NA 3' UTR (NM_032012, exon 18 of 18) 3' UTR (NM_032012, exon 18 of 18) -5834 NM_001286974 8727 Hs.58488 NM_003798 ENSG00000119326 CTNNAL1 ACRP|CLLP|alpha-CATU catenin alpha like 1 protein-coding 198.667-9 chr10 59381052 59381521 + 1.16667 NA Intergenic LTR16D2|LTR|ERVL -18105 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 149.334-6 chr2 13644537 13644696 + 1.16667 NA Intergenic THE1C-int|LTR|ERVL-MaLR -637603 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 203.167-2 chr1 189820744 189820968 + 1.16667 NA Intergenic Intergenic 655154 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 138.667-79 chr5 111982939 111983188 + 1.16667 NA intron (NR_046678, intron 3 of 3) MER5B|DNA|hAT-Charlie -6131 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 157.167-42 chr3 128048252 128048518 + 1.16667 NA Intergenic AluSz|SINE|Alu -4052 NM_013336 29927 Hs.518236 NM_013336 ENSG00000058262 SEC61A1 HNFJ4|HSEC61|SEC61|SEC61A SEC61 translocon alpha 1 subunit protein-coding 231.334-3 chr2 126416685 126417160 + 1.16667 NA Intergenic L1MA6|LINE|L1 -239013 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 259.501-3 chr9 25823284 25823964 + 1.16667 NA Intergenic L1MA2|LINE|L1 43568 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 159.167-42 chr3 172004144 172004345 + 1.16667 NA Intergenic L1ME1|LINE|L1 -35334 NM_022763 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 133.833-18 chr11 77243524 77243735 + 1.16667 NA intron (NM_182833, intron 13 of 16) intron (NM_182833, intron 13 of 16) 58037 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 176.5-20 chr14 30056075 30056248 + 1.16667 NA Intergenic L1ME3G|LINE|L1 -128314 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 326.001-2 chr3 192636156 192636807 + 1.16667 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 91060 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 202.5-13 chr2 126124788 126124999 + 1.16667 NA Intergenic MIR|SINE|MIR -6908 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 164-43 chr3 146628172 146628417 + 1.16667 NA Intergenic Intergenic -22078 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 162-33 chr2 42225227 42225424 + 1.16667 NA intron (NM_001145076, intron 1 of 21) L1MB4|LINE|L1 -55094 NR_110584 102723824 Hs.639826 NR_110584 LOC102723824 - uncharacterized LOC102723824 ncRNA 265.667-6 chr12 100462485 100462722 + 1.16667 NA Intergenic L1ME4b|LINE|L1 -11263 NM_001206977 9971 Hs.282735 NM_005123 ENSG00000012504 NR1H4 BAR|FXR|HRR-1|HRR1|PFIC5|RIP14 nuclear receptor subfamily 1 group H member 4 protein-coding 177-66 chr8 27230272 27230534 + 1.16667 NA Intergenic L1MEc|LINE|L1 28001 NM_001283054 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 379.668 chr9 27237372 27237813 + 1.16667 NA Intergenic L1MA8|LINE|L1 45201 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 125.5-52 chr3 130651691 130651825 + 1.16667 NA intron (NM_001102608, intron 32 of 35) intron (NM_001102608, intron 32 of 35) 91424 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 191.5-39 chr4 96700763 96700963 + 1.16667 NA intron (NR_147149, intron 3 of 3) L1ME3|LINE|L1 390160 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 170.834-3 chr12 27908078 27908277 + 1.16667 NA Intergenic Intergenic 61799 NM_198966 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 153.5-6 chr1 230541234 230541544 + 1.16667 NA Intergenic Intergenic 54194 NR_146479 101927553 Hs.680219 NR_146479 ENSG00000232964 LINC01737 - long intergenic non-protein coding RNA 1737 ncRNA 150.167 chr1 5210181 5210443 + 1.16667 NA Intergenic Intergenic 555703 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 206.667-5 chr1 207351243 207351557 + 1.16667 NA intron (NR_125349, intron 10 of 10) L1PA15|LINE|L1 29722 NM_001300904 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 138-33 chr14 67431925 67432103 + 1.16667 NA Intergenic Intergenic 9916 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 230.167-5 chr15 70933899 70934163 + 1.16667 NA intron (NM_017691, intron 7 of 15) HAL1|LINE|L1 41588 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 157.5-20 chr14 66881327 66881584 + 1.16667 NA intron (NM_001024218, intron 5 of 21) intron (NM_001024218, intron 5 of 21) -307985 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 323.167-3 chr5 161390434 161391247 + 1.16667 NA intron (NM_000813, intron 6 of 9) intron (NM_000813, intron 6 of 9) 157284 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 200.667-38 chr3 191559236 191559603 + 1.16667 NA intron (NR_120606, intron 3 of 6) intron (NR_120606, intron 3 of 6) 98256 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 138.167-13 chr12 7661410 7661536 + 1.16667 NA intron (NM_001304566, intron 2 of 5) intron (NM_001304566, intron 2 of 5) 4435 NM_005889 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 120.333-13 chr1 183589512 183589696 + 1.16667 NA intron (NM_001190794, intron 1 of 13) MER117|DNA|hAT-Charlie 1000 NM_001190789 4688 Hs.587558 NM_000433 ENSG00000116701 NCF2 NCF-2|NOXA2|P67-PHOX|P67PHOX neutrophil cytosolic factor 2 protein-coding 137.5-20 chr11 19505169 19505401 + 1.16667 NA non-coding (NR_049725, exon 1 of 3) non-coding (NR_049725, exon 1 of 3) 1944 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 136.167-53 chr3 183412560 183412768 + 1.16667 NA intron (NM_015078, intron 1 of 29) L1M4b|LINE|L1 15605 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 200.167-28 chr2 141811302 141811541 + 1.16667 NA intron (NM_018557, intron 1 of 90) Kanga1|DNA|TcMar-Tc2 320280 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 274.333-4 chr12 23589452 23589984 + 1.16667 NA intron (NM_152989, intron 12 of 17) intron (NM_152989, intron 12 of 17) -5132 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 295.5-14 chr9 94709661 94710037 + 1.16667 NA Intergenic MER54A|LTR|ERVL -16820 NM_032823 84909 Hs.434253 NM_032823 ENSG00000148120 AOPEP AP-O|APO|C90RF3|C9orf3|ONPEP aminopeptidase O (putative) protein-coding 151.667-13 chr11 39280049 39280274 + 1.16667 NA Intergenic LTR57-int|LTR|ERVL 631303 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 122.334-8 chr6 139523671 139523810 + 1.16667 NA Intergenic Intergenic -49144 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 151.167-26 chr2 21438490 21438664 + 1.16667 NA Intergenic L1M5|LINE|L1 272075 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 215.834-6 chr5 63844153 63844383 + 1.16667 NA Intergenic L1MEd|LINE|L1 118024 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 294.667-8 chr20 51326888 51327463 + 1.16667 NA Intergenic AluJb|SINE|Alu 125802 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 235.834-5 chr5 39591556 39591925 + 1.16667 NA Intergenic Intergenic 71309 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 166.167-33 chr3 181744364 181744826 + 1.16667 NA Intergenic A-rich|Low_complexity|Low_complexity 32670 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 141.5-39 chr18 726889 727078 + 1.16667 NA intron (NM_005433, intron 11 of 11) intron (NM_005433, intron 11 of 11) -14319 NR_148707 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 FUCD|RTS|TYMSAS enolase superfamily member 1 protein-coding 182.834-2 chr15 58393588 58393799 + 1.16667 NA Intergenic L3|LINE|CR1 -38298 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 173.5-45 chr5 62320957 62321203 + 1.16667 NA intron (NM_001243952, intron 2 of 20) L1MB7|LINE|L1 14918 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 225-18 chr17 61064391 61064797 + 1.16667 NA intron (NM_001330413, intron 20 of 25) intron (NM_001330413, intron 20 of 25) 303110 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 377.667-2 chr3 147997044 147997510 + 1.16667 NA Intergenic Intergenic -80882 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 118.667-29 chr12 117708313 117708512 + 1.16667 NA intron (NM_173598, intron 4 of 19) MIRb|SINE|MIR 260578 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 121.5-47 chr18 3612639 3612787 + 1.16667 NA intron (NM_001242761, intron 7 of 11) intron (NM_001242761, intron 7 of 11) 8976 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 192.5-28 chr20 49818787 49819226 + 1.16667 NA intron (NR_048539, intron 2 of 13) intron (NR_048539, intron 2 of 13) 6178 NM_015266 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 215-42 chr8 124697667 124697908 + 1.16667 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 30686 NM_001363299 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 315.501 chr10 83607900 83608284 + 1.16667 NA Intergenic L1MC2|LINE|L1 68997 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 241-8 chr16 81518264 81518577 + 1.16667 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) -15482 NR_107008 102465840 NR_107008 ENSG00000277255 MIR7854 hsa-mir-7854 microRNA 7854 ncRNA 192.167-40 chr7 33453064 33453314 + 1.16667 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 323625 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 122.334 chr13 24090175 24090376 + 1.16667 NA intron (NM_001286792, intron 3 of 14) intron (NM_001286792, intron 3 of 14) -70445 NM_001166271 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 218.667 chr1 44076460 44076774 + 1.16667 NA Intergenic L1M5|LINE|L1 -42204 NM_173484 128209 Hs.567674 NM_173484 ENSG00000171872 KLF17 ZNF393|Zfp393 Kruppel like factor 17 protein-coding 115-59 chr4 147876666 147876853 + 1.16667 NA intron (NM_024605, intron 8 of 22) intron (NM_024605, intron 8 of 22) 94164 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 159.667-63 chr3 151926773 151926944 + 1.16667 NA intron (NR_110203, intron 1 of 2) intron (NR_110203, intron 1 of 2) 1317 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 262.167-2 chr1 190725059 190725492 + 1.16667 NA intron (NR_033922, intron 1 of 4) MLT1A0|LTR|ERVL-MaLR 100385 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 128-4 chr1 111766795 111766988 + 1.16667 NA exon (NM_007204, exon 11 of 11) exon (NM_007204, exon 11 of 11) 10990 NM_007204 11218 Hs.591405 NM_007204 ENSG00000064703 DDX20 DP103|GEMIN3 DEAD-box helicase 20 protein-coding 288.834 chr11 80855408 80855830 + 1.16667 NA Intergenic Intergenic -92816 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 265.501-3 chr2 155983491 155983731 + 1.16667 NA Intergenic L1MEi|LINE|L1 271320 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 140.334-5 chr18 68074911 68075097 + 1.16667 NA Intergenic Intergenic -260182 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 315.667-14 chr8 133631867 133632481 + 1.16667 NA Intergenic L2a|LINE|L2 51892 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 173.167-50 chr8 82035418 82035579 + 1.16667 NA Intergenic MIRb|SINE|MIR -193212 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 275-6 chr2 162951307 162951624 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -112698 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 233.667-12 chr16 52447005 52447328 + 1.16667 NA intron (NM_001146188, intron 5 of 7) intron (NM_001146188, intron 5 of 7) 99977 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 364.834-2 chr3 185150776 185151440 + 1.16667 NA intron (NM_001025266, intron 1 of 1) L3|LINE|CR1 1952 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 200.667-54 chr9 76312839 76313250 + 1.16667 NA intron (NM_001190482, intron 29 of 36) MIR|SINE|MIR 81382 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 187-10 chr11 115242814 115243104 + 1.16667 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -90618 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 181.334-5 chr7 20391497 20391757 + 1.16667 NA intron (NM_002214, intron 7 of 13) intron (NM_002214, intron 7 of 13) -59865 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 282.501 chr1 39035682 39035948 + 1.16667 NA Intergenic AluSg|SINE|Alu 9465 NM_004552 4725 Hs.632385 NM_004552 ENSG00000168653 NDUFS5 CI-15k|CI15K NADH:ubiquinone oxidoreductase subunit S5 protein-coding 259.333-9 chr14 59325304 59325756 + 1.16667 NA intron (NM_001270520, intron 8 of 24) intron (NM_001270520, intron 8 of 24) 62089 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 177-37 chr2 142406873 142407052 + 1.16667 NA Intergenic Intergenic -275261 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 171-42 chr4 118920072 118920247 + 1.16667 NA intron (NM_001128934, intron 1 of 4) L2c|LINE|L2 31305 NM_001128933 171024 Hs.655519 NM_133477 ENSG00000172403 SYNPO2 - synaptopodin 2 protein-coding 231.001 chr11 35412322 35412855 + 1.16667 NA intron (NM_001252652, intron 1 of 11) intron (NM_001252652, intron 1 of 11) 6970 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 339.5-4 chr2 104003705 104004215 + 1.16667 NA Intergenic Intergenic 404372 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 210.334 chr1 114949938 114950203 + 1.16667 NA intron (NM_001282541, intron 27 of 31) MLT1I|LTR|ERVL-MaLR -79754 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 199.5-44 chr7 98564007 98564217 + 1.16667 NA Intergenic Intergenic -53173 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 129-102 chr8 138292339 138292542 + 1.16667 NA intron (NM_015912, intron 3 of 19) L1M3|LINE|L1 204821 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 154.5-37 chr2 78037079 78037228 + 1.16667 NA intron (NR_110288, intron 1 of 3) MIR|SINE|MIR -51577 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 226.334-10 chr8 79336260 79336828 + 1.16667 NA Intergenic Intergenic 4356 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 167.5-3 chr1 90084642 90085005 + 1.16667 NA Intergenic L1MC4|LINE|L1 89713 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 242.834-4 chr21 15489614 15489973 + 1.16667 NA Intergenic Intergenic -240141 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 251.334-5 chr4 30091973 30092228 + 1.16667 NA Intergenic Intergenic -628269 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 237.334-8 chr5 5464126 5464421 + 1.16667 NA exon (NM_015325, exon 13 of 19) exon (NM_015325, exon 13 of 19) 41596 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 253.5-3 chr1 178145212 178145501 + 1.16667 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) 51252 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 187.167-8 chr12 31575512 31575854 + 1.16667 NA intron (NM_001308339, intron 1 of 22) AluSz|SINE|Alu -14240 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 175.5-49 chr5 41635754 41636050 + 1.16667 NA Intergenic Intergenic -125301 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 349.167-4 chr15 86633907 86634434 + 1.16667 NA intron (NM_152336, intron 22 of 24) L1MB7|LINE|L1 -298710 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 315.333-5 chr13 94313525 94314206 + 1.16667 NA intron (NM_005708, intron 6 of 8) intron (NM_005708, intron 6 of 8) -125874 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 183.667 chr1 20913464 20913711 + 1.16667 NA intron (NM_003760, intron 9 of 31) intron (NM_003760, intron 9 of 31) 74845 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 171.833-18 chr17 61105001 61105263 + 1.16667 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 262572 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 236.333-9 chr14 98662072 98662493 + 1.16667 NA Intergenic L1MEa|LINE|L1 -49331 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 227.334-2 chr10 39519748 39519970 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr 823263 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 262.001 chr12 27176592 27176851 + 1.16667 NA Intergenic MER63C|DNA|hAT-Blackjack -67565 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 205.834-3 chr15 48776353 48776562 + 1.16667 NA intron (NM_014985, intron 12 of 25) L1ME4a|LINE|L1 34612 NM_014985 22995 Hs.443005 NM_014985 ENSG00000103995 CEP152 MCPH4|MCPH9|SCKL5 centrosomal protein 152 protein-coding 200 chr1 80570317 80570588 + 1.16667 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) 34697 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 252.834-3 chr21 29351377 29351615 + 1.16667 NA intron (NR_027655, intron 4 of 7) intron (NR_027655, intron 4 of 7) -21005 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 165.834-6 chr7 86834170 86834342 + 1.16667 NA intron (NM_001363522, intron 3 of 4) intron (NM_001363522, intron 3 of 4) 131643 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 260-18 chr4 60672448 60672839 + 1.16667 NA Intergenic Intergenic -249976 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 293.5-9 chr3 138767697 138768124 + 1.16667 NA intron (NM_006219, intron 2 of 23) MER52A|LTR|ERV1 -60289 NM_001256045 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 161.5-49 chr8 58592862 58593088 + 1.16667 NA intron (NM_001144772, intron 23 of 30) intron (NM_001144772, intron 23 of 30) 39714 NM_005625 6386 Hs.200804 NM_005625 ENSG00000137575 SDCBP MDA-9|MDA9|ST1|SYCL|TACIP18 syndecan binding protein protein-coding 227.834-9 chr7 28477757 28478004 + 1.16667 NA intron (NM_004904, intron 1 of 10) AluJo|SINE|Alu 42265 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 204.167-12 chr16 72613466 72613780 + 1.16667 NA intron (NR_159372, intron 1 of 7) intron (NR_159372, intron 1 of 7) 51347 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 153.667-20 chr12 67300412 67300621 + 1.16667 NA intron (NM_018448, intron 7 of 14) L2a|LINE|L2 31158 NM_001329676 55832 Hs.546407 NM_018448 ENSG00000111530 CAND1 TIP120|TIP120A cullin associated and neddylation dissociated 1 protein-coding 170.834-9 chr4 30552429 30552650 + 1.16667 NA Intergenic THE1A|LTR|ERVL-MaLR -167830 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 361.668 chr8 82792334 82792667 + 1.16667 NA Intergenic L1PA8|LINE|L1 -119604 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 142-62 chr3 60105233 60105446 + 1.16667 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -24430 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 241.834-3 chr2 11965898 11966265 + 1.16667 NA Intergenic AluSx|SINE|Alu -41035 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 171.5-23 chr17 40134612 40134799 + 1.16667 NA 3' UTR (NM_001365920, exon 8 of 8) 3' UTR (NM_001365920, exon 8 of 8) -5832 NM_007359 22794 Hs.743287 NM_007359 ENSG00000108349 CASC3 BTZ|MLN51 CASC3 exon junction complex subunit protein-coding 200.834-5 chr5 127262006 127262260 + 1.16667 NA Intergenic L1MB8|LINE|L1 -28631 NM_001308119 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 256.5-31 chr7 23973741 23974107 + 1.16667 NA Intergenic L1MA8|LINE|L1 263705 NM_001260505 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 234.334-4 chr4 42720664 42721121 + 1.16667 NA Intergenic Intergenic -63787 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 186.167-24 chr20 1453270 1453499 + 1.16667 NA intron (NM_018839, intron 4 of 7) MIRb|SINE|MIR 14308 NM_001206736 55968 Hs.12865 NM_016143 ENSG00000088833 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 cofactor protein-coding 301 chr1 117703714 117704374 + 1.16667 NA Intergenic Intergenic 97996 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 178.5-31 chr14 82343346 82343552 + 1.16667 NA Intergenic MIR|SINE|MIR -299183 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 208.167-8 chr17 63746227 63746441 + 1.16667 NA 3' UTR (NM_020198, exon 13 of 13) 3' UTR (NM_020198, exon 13 of 13) -4348 NM_001003786 92335 Hs.514402 NM_153335 ENSG00000266173 STRADA LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk STE20 related adaptor alpha protein-coding 268-9 chr2 40049240 40049563 + 1.16667 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 131767 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 374-8 chr8 120144588 120145017 + 1.16667 NA intron (NM_021110, intron 1 of 47) intron (NM_021110, intron 1 of 47) 19700 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 132.167-9 chr10 54576564 54576863 + 1.16667 NA intron (NR_134503, intron 2 of 5) intron (NR_134503, intron 2 of 5) 31244 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 331.334 chr14 50579805 50580331 + 1.16667 NA intron (NM_015915, intron 1 of 13) L1M5|LINE|L1 20043 NM_181598 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 256.001-2 chr20 38841602 38841880 + 1.16667 NA intron (NM_015568, intron 2 of 10) L1MB7|LINE|L1 36044 NM_015568 26051 Hs.45719 NM_015568 ENSG00000101445 PPP1R16B ANKRD4|TIMAP protein phosphatase 1 regulatory subunit 16B protein-coding 153.667-49 chr3 59199583 59199819 + 1.16667 NA Intergenic (TATTTA)n|Simple_repeat|Simple_repeat -149669 NM_001351533 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 277.667 chr1 233598853 233599243 + 1.16667 NA Intergenic Intergenic -15058 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 326.834 chr17 19640915 19641307 + 1.16667 NA Intergenic L1MC|LINE|L1 -7039 NM_001369138 224 Hs.499886 NM_000382 ENSG00000072210 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family member A2 protein-coding 117.833-50 chr3 88846135 88846354 + 1.16667 NA Intergenic Intergenic -261377 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 116-3 chr1 87248463 87248700 + 1.16667 NA intron (NM_001290053, intron 3 of 3) intron (NM_001290053, intron 3 of 3) 35912 NM_001290053 101927844 Hs.694591 NM_001290053 LINC02801 - long intergenic non-protein coding RNA 2801 protein-coding 275.667 chr1 58018970 58019342 + 1.16667 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 158575 NR_104364 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 146.167-10 chr12 60500285 60500455 + 1.16667 NA Intergenic Intergenic 811000 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 215.5-34 chr5 118859240 118859511 + 1.16667 NA intron (NM_001308081, intron 4 of 5) L1MC5a|LINE|L1 -115211 NR_036263 100422872 NR_036263 ENSG00000283429 MIR1244-3 - microRNA 1244-3 ncRNA 333.167-3 chr7 106109341 106109812 + 1.16667 NA intron (NM_182715, intron 1 of 4) L2|LINE|L2 2736 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 222.667-34 chr7 14801958 14802176 + 1.16667 NA intron (NM_001350717, intron 2 of 24) intron (NM_001350717, intron 2 of 24) 39383 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 379.833 chr10 6812894 6813392 + 1.16667 NA intron (NR_038291, intron 2 of 4) intron (NR_038291, intron 2 of 4) 33545 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 308.167-2 chr2 203378445 203378993 + 1.16667 NA intron (NM_001282932, intron 3 of 9) intron (NM_001282932, intron 3 of 9) 11835 NM_001282927 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 180.167-33 chr3 68542468 68542641 + 1.16667 NA intron (NM_001252216, intron 4 of 4) intron (NM_001252216, intron 4 of 4) 41917 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 147-73 chr5 150983516 150983686 + 1.16667 NA Intergenic L1MCa|LINE|L1 -36990 NM_001329790 2878 Hs.386793 NM_002084 ENSG00000211445 GPX3 GPx-P|GSHPx-3|GSHPx-P glutathione peroxidase 3 protein-coding 136.334-6 chr5 39892142 39892302 + 1.16667 NA Intergenic Intergenic -160069 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 187.334-2 chr2 41797807 41798027 + 1.16667 NA Intergenic L1MC2|LINE|L1 -79638 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 251.667-18 chr5 129355239 129355567 + 1.16667 NA Intergenic Intergenic 41744 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 264.5-19 chr9 27014739 27015082 + 1.16667 NA intron (NM_001099224, intron 10 of 13) intron (NM_001099224, intron 10 of 13) -9238 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 326-4 chr2 102049110 102049636 + 1.16667 NA Intergenic Intergenic -21017 NM_001288706 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 286.167-8 chr22 41127565 41128211 + 1.16667 NA intron (NM_001429, intron 4 of 30) L1MA10|LINE|L1 35296 NM_001429 2033 Hs.517517 NM_001429 ENSG00000100393 EP300 KAT3B|MKHK2|RSTS2|p300 E1A binding protein p300 protein-coding 212.167-10 chr2 190013787 190014126 + 1.16667 NA Intergenic L1MA7|LINE|L1 48773 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 172.334-2 chr11 127223948 127224421 + 1.16667 NA Intergenic L2b|LINE|L2 -46886 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 169.834-8 chr4 103171590 103171822 + 1.16667 NA intron (NM_001813, intron 16 of 48) L1MA8|LINE|L1 26637 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 161.167-11 chr11 113946243 113946467 + 1.16667 NA 3' UTR (NM_001363563, exon 8 of 8) 3' UTR (NM_001363563, exon 8 of 8) -28720 NR_046363 3359 Hs.413899 NM_000869 ENSG00000166736 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine receptor 3A protein-coding 312.5-7 chr4 33303085 33303469 + 1.16667 NA Intergenic Intergenic 736616 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 269.667-4 chr10 82806661 82807069 + 1.16667 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -573945 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 207.667-39 chr5 67654655 67654932 + 1.16667 NA Intergenic L1MC4a|LINE|L1 -8004 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 373.333 chr10 30687103 30687726 + 1.16667 NA Intergenic Intergenic -4860 NR_036438 645954 Hs.408581 NR_036438 SVIL2P SVILP1 supervillin family member 2, pseudogene pseudo 276.5-17 chrX 98176539 98177058 + 1.16667 NA Intergenic Intergenic -612263 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 267.667-10 chr2 39419106 39419588 + 1.16667 NA intron (NM_003618, intron 1 of 33) intron (NM_003618, intron 1 of 33) 17938 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 297.001-2 chr2 126363705 126364001 + 1.16667 NA Intergenic Intergenic -245868 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 210.834-3 chr3 69448491 69448785 + 1.16667 NA Intergenic L1ME1|LINE|L1 -62550 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 298.167-11 chrX 58442230 58442783 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr -531873 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 244-10 chr2 190558732 190558999 + 1.16667 NA Intergenic Intergenic -24143 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 348.5-2 chr1 197305493 197305898 + 1.16667 NA intron (NM_001257965, intron 3 of 14) intron (NM_001257965, intron 3 of 14) 37443 NM_201253 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 163.833-63 chr9 37407050 37407289 + 1.16667 NA Intergenic LTR72|LTR|ERV1 -15527 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 347.668 chr7 3397162 3397801 + 1.16667 NA intron (NM_152744, intron 1 of 44) L1MB4|LINE|L1 96229 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 211.834-4 chr20 35124614 35124896 + 1.16667 NA intron (NM_001145025, intron 7 of 9) intron (NM_001145025, intron 7 of 9) 22581 NM_018217 55741 Hs.720177 NM_018217 ENSG00000088298 EDEM2 C20orf31|C20orf49|bA4204.1 ER degradation enhancing alpha-mannosidase like protein 2 protein-coding 124.333-40 chr17 71191062 71191309 + 1.16667 NA intron (NR_104152, intron 1 of 3) L1ME3G|LINE|L1 10994 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 224.167 chr1 10456426 10456828 + 1.16667 NA 3' UTR (NM_004401, exon 6 of 6) 3' UTR (NM_004401, exon 6 of 6) 6596 NM_001302 1325 Hs.412311 NM_001302 ENSG00000241563 CORT CST-14|CST-17|CST-29 cortistatin protein-coding 227.167-24 chr4 30356304 30356667 + 1.16667 NA Intergenic Intergenic -363884 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 282.167-18 chr8 105832907 105833506 + 1.16667 NA intron (NR_125796, intron 2 of 7) intron (NR_125796, intron 2 of 7) 227297 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 205-24 chr3 16853794 16854139 + 1.16667 NA Intergenic L1ME2|LINE|L1 -30989 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 239.667-9 chr14 58418075 58418415 + 1.16667 NA intron (NM_001304487, intron 1 of 3) L1MD1|LINE|L1 8997 NR_130753 26520 Hs.440525 NM_012460 ENSG00000100575 TIMM9 TIM9|TIM9A translocase of inner mitochondrial membrane 9 protein-coding 191.167-18 chr3 136733486 136733804 + 1.16667 NA intron (NM_005862, intron 1 of 33) LTR83|LTR|ERVL 18733 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 132.667-71 chr4 54952238 54952441 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 173256 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 308.834 chr17 33333428 33333764 + 1.16667 NA intron (NM_001094, intron 1 of 9) L1ME4a|LINE|L1 -40608 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 241.167-10 chr3 95312070 95312416 + 1.16667 NA Intergenic Intergenic 370950 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 190.667-3 chr1 231409315 231409691 + 1.16667 NA intron (NM_022051, intron 1 of 4) intron (NM_022051, intron 1 of 4) 15541 NM_022051 54583 Hs.444450 NM_022051 ENSG00000135766 EGLN1 C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia inducible factor 1 protein-coding 357.501 chr10 55024278 55024844 + 1.16667 NA intron (NM_001354404, intron 3 of 34) L2|LINE|L2 -223270 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 333.667 chr18 21601352 21601839 + 1.16667 NA promoter-TSS (NM_052911) promoter-TSS (NM_052911) -891 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 330.167-6 chr5 165832839 165833389 + 1.16667 NA Intergenic Intergenic 1093256 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 199.334-3 chr2 104891283 104891472 + 1.16667 NA Intergenic Intergenic -18782 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 214.334-4 chr5 167657886 167658157 + 1.16667 NA intron (NM_001368145, intron 1 of 26) MLT1A1|LTR|ERVL-MaLR 84362 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 206.334-11 chr8 82068626 82069072 + 1.16667 NA Intergenic MLT1E2|LTR|ERVL-MaLR -226563 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 232-32 chr8 11903760 11904018 + 1.16667 NA Intergenic AluSz6|SINE|Alu -35802 NM_147783 1508 Hs.520898 NM_001908 ENSG00000164733 CTSB APPS|CPSB|RECEUP cathepsin B protein-coding 161.167-39 chr3 89738481 89738715 + 1.16667 NA Intergenic Intergenic 630977 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 282-9 chr14 64638120 64638682 + 1.16667 NA Intergenic L1PA16|LINE|L1 -66023 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 217-6 chr14 45188454 45188840 + 1.16667 NA intron (NM_001308133, intron 18 of 21) intron (NM_001308133, intron 18 of 21) 52708 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 241.334-4 chr21 29278166 29278508 + 1.16667 NA intron (NR_027072, intron 1 of 1) AluJb|SINE|Alu -20585 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 261-16 chr22 44419701 44420063 + 1.16667 NA Intergenic L1MC3|LINE|L1 -23445 NR_109966 101927526 Hs.339290 NR_109966 ENSG00000232655 LINC01656 - long intergenic non-protein coding RNA 1656 ncRNA 138.834 chr1 194958157 194958336 + 1.16667 NA Intergenic L1MEg|LINE|L1 1130469 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 197.167-23 chr19 31136637 31136827 + 1.16667 NA Intergenic AluJo|SINE|Alu -30778 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 223.667-27 chr6 136869821 136870276 + 1.16667 NA intron (NM_000288, intron 7 of 9) intron (NM_000288, intron 7 of 9) 47456 NM_000288 5191 Hs.280932 NM_000288 ENSG00000112357 PEX7 PBD9B|PTS2R|RCDP1|RD peroxisomal biogenesis factor 7 protein-coding 185.5-28 chr22 47088240 47088450 + 1.16667 NA intron (NM_001284305, intron 11 of 12) L1MC5a|LINE|L1 -172303 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 206.167-2 chr12 78207778 78207998 + 1.16667 NA intron (NM_001024383, intron 39 of 39) L2c|LINE|L2 151858 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 150.334-2 chr2 22846084 22846284 + 1.16667 NA Intergenic Intergenic 309705 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 233.834 chr1 114424877 114425149 + 1.16667 NA intron (NM_015906, intron 9 of 19) intron (NM_015906, intron 9 of 19) 86190 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 180.667-74 chr8 65401147 65401618 + 1.16667 NA Intergenic Intergenic 161284 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 129.667-41 chr16 64756962 64757185 + 1.16667 NA Intergenic Intergenic 364990 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 156.833-22 chr15 95114369 95114658 + 1.16667 NA Intergenic L1MA3|LINE|L1 212587 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 236.001 chr1 207363365 207363593 + 1.16667 NA Intergenic MLT1J1|LTR|ERVL-MaLR 41801 NM_001300904 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 251.833-3 chr14 73929024 73929372 + 1.16667 NA intron (NM_001242928, intron 12 of 12) intron (NM_001242928, intron 12 of 12) -20736 NM_182480 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 113.167-38 chr2 169600899 169601019 + 1.16667 NA intron (NM_004792, intron 1 of 13) L1ME3G|LINE|L1 16608 NM_004792 9360 Hs.470544 NM_004792 ENSG00000138398 PPIG CARS-Cyp|CYP|SCAF10|SRCyp peptidylprolyl isomerase G protein-coding 263.667-10 chr2 122752889 122753311 + 1.16667 NA Intergenic L1ME3Cz|LINE|L1 320381 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 190.333-41 chr22 24748257 24748526 + 1.16667 NA intron (NM_001008496, intron 12 of 20) L1MA2|LINE|L1 -16110 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 145.834-4 chr19 43986184 43986335 + 1.16667 NA intron (NM_001260486, intron 1 of 4) intron (NM_001260486, intron 1 of 4) 2071 NM_198089 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 256.167-16 chr5 33007189 33007744 + 1.16667 NA Intergenic Intergenic 60023 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 205.167-39 chr8 100271808 100272149 + 1.16667 NA intron (NM_001353837, intron 3 of 9) intron (NM_001353837, intron 3 of 9) 30215 NM_001353837 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 178-14 chr12 109883751 109884043 + 1.16667 NA Intergenic Intergenic -3356 NM_016433 51228 Hs.381256 NM_016433 ENSG00000139433 GLTP - glycolipid transfer protein protein-coding 307.334-2 chr14 29809962 29810423 + 1.16667 NA intron (NM_001330069, intron 1 of 18) Tigger1|DNA|TcMar-Tigger 116904 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 258.5-12 chr2 103516446 103516856 + 1.16667 NA Intergenic L1MEc|LINE|L1 -532222 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 147.334 chr1 177300625 177300820 + 1.16667 NA Intergenic LTR16|LTR|ERVL -50864 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 210.5-13 chr13 61338019 61338314 + 1.16667 NA Intergenic MER5B|DNA|hAT-Charlie 77356 NM_022843 64881 Hs.391781 NM_022843 ENSG00000280165 PCDH20 PCDH13 protocadherin 20 protein-coding 266.5-12 chr3 125507615 125508048 + 1.16667 NA intron (NM_003794, intron 1 of 13) AluSq|SINE|Alu 12371 NM_003794 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 404.5-2 chr8 132972197 132972943 + 1.16667 NA intron (NM_003235, intron 33 of 47) (T)n|Simple_repeat|Simple_repeat 74011 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 210.834-4 chr4 97790664 97791104 + 1.16667 NA intron (NM_174952, intron 9 of 10) MLT1E2|LTR|ERVL-MaLR 352592 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 311-7 chr5 7359354 7359907 + 1.16667 NA Intergenic Intergenic -11653 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 133.834-2 chr14 80974143 80974264 + 1.16667 NA intron (NM_001142626, intron 1 of 8) intron (NM_001142626, intron 1 of 8) 18582 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 200.667-26 chr15 73567916 73568192 + 1.16667 NA non-coding (NR_103844, exon 1 of 1) non-coding (NR_103844, exon 1 of 1) 1489 NR_103844 101241892 Hs.656678 NR_103844 ENSG00000281183 NPTN-IT1 lncRNA-LET NPTN intronic transcript 1 ncRNA 235.334-4 chr5 16876908 16877221 + 1.16667 NA intron (NM_012334, intron 2 of 40) MLT1A0|LTR|ERVL-MaLR 59224 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 355.167 chr10 75064845 75065428 + 1.16667 NA Intergenic Intergenic -6553 NM_001003892 338599 Hs.535090 NM_001003892 ENSG00000188716 DUPD1 DUSP27|FMDSP dual specificity phosphatase and pro isomerase domain containing 1 protein-coding 204-30 chr4 111767890 111768123 + 1.16667 NA Intergenic L1PA15|LINE|L1 -377448 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 132.833-57 chr7 12825702 12825901 + 1.16667 NA Intergenic Intergenic 138168 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 236.5-21 chr3 74398762 74399153 + 1.16667 NA intron (NM_020872, intron 4 of 21) L1MA5A|LINE|L1 122183 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 193.667-9 chr12 15481542 15481863 + 1.16667 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) -64909 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 194.834-7 chr4 93596169 93596373 + 1.16667 NA intron (NM_001286838, intron 12 of 14) intron (NM_001286838, intron 12 of 14) -232482 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 124.333-38 chr17 58695284 58695507 + 1.16667 NA TTS (NM_002876) TTS (NM_002876) 2793 NM_058216 5889 Hs.412587 NM_002876 ENSG00000108384 RAD51C BROVCA3|FANCO|R51H3|RAD51L2 RAD51 paralog C protein-coding 128.667-87 chr4 92507898 92508118 + 1.16667 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 203609 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 229.834-2 chr1 170441388 170441657 + 1.16667 NA Intergenic L1ME1|LINE|L1 -90600 NM_001146039 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 142.167-42 chr2 183870834 183871117 + 1.16667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -508000 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 244.334-7 chr7 43138957 43139338 + 1.16667 NA intron (NR_135295, intron 3 of 6) intron (NR_135295, intron 3 of 6) -11748 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 221.167-20 chr4 138588493 138588889 + 1.16667 NA Intergenic MER63C|DNA|hAT-Blackjack 278980 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 121.5-21 chr11 81521757 81521984 + 1.16667 NA Intergenic Intergenic 368966 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 119.167-52 chr20 46859230 46859527 + 1.16667 NA Intergenic 7SK|RNA|RNA -35246 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 191.667-4 chr10 5567859 5568123 + 1.16667 NA Intergenic Intergenic 28127 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LINC02657 - long intergenic non-protein coding RNA 2657 ncRNA 176-28 chr4 35126623 35126875 + 1.16667 NA Intergenic Intergenic -857002 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 262.667-12 chr16 78369261 78369895 + 1.16667 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 269924 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 139.5-15 chr12 22748340 22748510 + 1.16667 NA Intergenic LTR37-int|LTR|ERV1 123254 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 206.334 chr1 160790461 160790637 + 1.16667 NA Intergenic MLT2B2|LTR|ERVL -5625 NM_001033667 4063 Hs.403857 NM_002348 ENSG00000122224 LY9 CD229|SLAMF3|hly9|mLY9 lymphocyte antigen 9 protein-coding 257.501 chr2 199855973 199856240 + 1.16667 NA Intergenic Intergenic -4933 NM_001363886 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 180.667-82 chrX 38476871 38477025 + 1.16667 NA Intergenic L1MC4|LINE|L1 -84530 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 214.667-12 chr13 105581213 105581436 + 1.16667 NA Intergenic Intergenic -75643 NR_040247 282706 Hs.558713 NR_040247 ENSG00000232307 DAOA-AS1 DAOA-AS|DAOAAS|G30 DAOA antisense RNA 1 ncRNA 113.167-16 chr12 33293659 33293866 + 1.16667 NA Intergenic Intergenic 146057 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 221.5-10 chr12 128731370 128731719 + 1.16667 NA Intergenic MLT1A0|LTR|ERVL-MaLR 92414 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 397.334 chr1 92876038 92876617 + 1.16667 NA exon (NM_001252273, exon 2 of 5) exon (NM_001252273, exon 2 of 5) 823 NM_001252271 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 202.667-13 chr14 61371110 61371766 + 1.16667 NA intron (NM_006255, intron 1 of 13) L1MC3|LINE|L1 49995 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 386-2 chr12 1039542 1040027 + 1.16667 NA intron (NR_027949, intron 2 of 15) intron (NR_027949, intron 2 of 15) 12036 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 140.5-17 chr12 55652748 55652952 + 1.16667 NA Intergenic Intergenic 15958 NM_206899 121130 Hs.554551 NM_206899 ENSG00000175398 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor family 10 subfamily P member 1 protein-coding 173.167-47 chr8 11213673 11213852 + 1.16667 NA Intergenic Intergenic -11929 NM_173683 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 247.667-21 chr7 31278896 31279126 + 1.16667 NA Intergenic L1MEd|LINE|L1 61715 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 223-33 chr8 55095519 55095852 + 1.16667 NA Intergenic MER45C|DNA|hAT-Tip100 -6343 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 236.334-10 chr4 163650343 163650614 + 1.16667 NA intron (NM_001166373, intron 4 of 7) MIRb|SINE|MIR -36944 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 299.667-16 chr8 119251823 119252226 + 1.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR -5167 NR_149113 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 174.5 chr1 71307236 71307515 + 1.16667 NA Intergenic Intergenic 226051 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 126.334-8 chr4 103984743 103984936 + 1.16667 NA Intergenic Intergenic -264854 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 146.5-43 chr2 71380583 71380843 + 1.16667 NA intron (NM_001252613, intron 10 of 27) intron (NM_001252613, intron 10 of 27) 48931 NM_014497 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 170.834-7 chr3 36646679 36646918 + 1.16667 NA Intergenic L1MEg|LINE|L1 93063 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 156.833-4 chr1 188681233 188681474 + 1.16667 NA Intergenic MER41B|LTR|ERV1 1237725 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 261-18 chr4 30764066 30764495 + 1.16667 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 43911 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 454.667-2 chr4 104037987 104038778 + 1.16667 NA Intergenic L2a|LINE|L2 -318397 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 130.667-46 chr21 31564575 31564811 + 1.16667 NA Intergenic LTR44|LTR|ERV1 5460 NM_001321023 150051 Hs.708976 NM_001321023 LOC150051 - uncharacterized LOC150051 protein-coding 178.667-63 chr7 31095311 31095534 + 1.16667 NA intron (NM_001199637, intron 11 of 13) intron (NM_001199637, intron 11 of 13) 42961 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 256 chr1 82391277 82391740 + 1.16667 NA Intergenic Intergenic -511675 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 215.5-18 chr2 30377078 30377467 + 1.16667 NA Intergenic Intergenic 30626 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 262.834-4 chr5 106491005 106491834 + 1.16667 NA Intergenic Intergenic 519595 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 130.667-23 chr14 21988303 21988426 + 1.16667 NA Intergenic Intergenic -317347 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 160.167-62 chr8 38657926 38658108 + 1.16667 NA Intergenic Intergenic -56760 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 188-58 chr7 14757550 14757762 + 1.16667 NA exon (NM_145695, exon 2 of 24) exon (NM_145695, exon 2 of 24) 83794 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 294.334 chr1 13637295 13637660 + 1.16667 NA Intergenic Charlie10|DNA|hAT-Charlie 52017 NM_001006625 10630 Hs.468675 NM_006474 ENSG00000162493 PDPN AGGRUS|GP36|GP40|Gp38|HT1A-1|OTS8|PA2.26|T1A|T1A-2|T1A2|TI1A podoplanin protein-coding 124.5-42 chr3 12881395 12881522 + 1.16667 NA intron (NR_136189, intron 1 of 2) AluJr|SINE|Alu 3753 NR_136189 105376955 Hs.561179 NR_136189 ENSG00000232746 LINC02022 - long intergenic non-protein coding RNA 2022 ncRNA 176.167-49 chr9 85708263 85708470 + 1.16667 NA intron (NM_001286717, intron 1 of 24) MLT1D|LTR|ERVL-MaLR 33663 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 169.834-5 chr3 126709174 126709446 + 1.16667 NA intron (NM_032343, intron 1 of 7) L1MB7|LINE|L1 5070 NM_001320610 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 178-50 chr6 39687920 39688218 + 1.16667 NA intron (NM_001289020, intron 3 of 21) LTR33|LTR|ERVL 37339 NM_001289021 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 163.834-5 chr20 59082035 59082227 + 1.16667 NA Intergenic Intergenic -39285 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 262.834-3 chr5 10028905 10029295 + 1.16667 NA Intergenic L1MA1|LINE|L1 -125276 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 183.834 chr2 41622379 41622558 + 1.16667 NA Intergenic Intergenic -255087 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 173.667-61 chr7 34278577 34278870 + 1.16667 NA Intergenic Intergenic 373184 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 302-18 chr3 49749494 49749827 + 1.16667 NA intron (NM_153273, intron 1 of 5) AluJb|SINE|Alu -25686 NM_013334 29925 Hs.567488 NM_013334 ENSG00000173540 GMPPB LGMDR19|MDDGA14|MDDGB14|MDDGC14 GDP-mannose pyrophosphorylase B protein-coding 403.834-3 chr9 79017335 79017751 + 1.16667 NA Intergenic LTR16E1|LTR|ERVL 128123 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 124.5-55 chr4 155478453 155478622 + 1.16667 NA Intergenic L2c|LINE|L2 -101572 NM_001039580 79884 Hs.61271 NM_001039580 ENSG00000164114 MAP9 ASAP microtubule associated protein 9 protein-coding 232.334-4 chr5 16234488 16234703 + 1.16667 NA Intergenic Intergenic 54354 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 273.167-8 chr14 78580633 78581029 + 1.16667 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 177112 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 320.001 chr1 225236395 225236754 + 1.16667 NA intron (NM_001367479, intron 42 of 85) L1PA11|LINE|L1 191464 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 225.833-6 chr14 53583739 53584138 + 1.16667 NA Intergenic Intergenic 364546 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 167.834-2 chr18 62198815 62198958 + 1.16667 NA intron (NR_144409, intron 1 of 31) intron (NR_144409, intron 1 of 31) 11631 NR_144404 57614 Hs.465323 NM_020854 ENSG00000134444 RELCH HsT3308|HsT885|KIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 150-37 chr2 39020769 39021061 + 1.16667 NA intron (NM_005633, intron 10 of 22) intron (NM_005633, intron 10 of 22) -60571 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 157.334-8 chr8 97327349 97327493 + 1.16667 NA intron (NR_125390, intron 2 of 2) L1MEd|LINE|L1 -30844 NR_145760 109617016 NR_145760 ENSG00000207215 SNORD3H - small nucleolar RNA, C/D box 3H snoRNA 213.167-15 chr2 201699332 201699783 + 1.16667 NA promoter-TSS (NM_033066) promoter-TSS (NM_033066) -913 NM_033066 58538 Hs.63085 NM_033066 ENSG00000082126 MPP4 ALS2CR5|DLG6 membrane palmitoylated protein 4 protein-coding 180-42 chr5 73667419 73667633 + 1.16667 NA intron (NM_001177693, intron 1 of 35) MSTD-int|LTR|ERVL-MaLR 41368 NM_001080479 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 206-40 chrX 63703670 63703929 + 1.16667 NA intron (NM_001369045, intron 4 of 11) L2a|LINE|L2 -32297 NR_138419 100874355 Hs.671524 NR_138419 ENSG00000231729 ARHGEF9-IT1 - ARHGEF9 intronic transcript 1 ncRNA 383.667 chr1 213128903 213129356 + 1.16667 NA intron (NM_001349669, intron 7 of 14) FLAM_A|SINE|Alu 77888 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 340.667-4 chr18 11885392 11885924 + 1.16667 NA TTS (NM_001261443) TTS (NM_001261443) 22659 NR_040242 65258 Hs.712666 NM_023075 ENSG00000154889 MPPE1 PGAP5 metallophosphoesterase 1 protein-coding 121-86 chr7 90298003 90298114 + 1.16667 NA intron (NM_001039706, intron 16 of 22) intron (NM_001039706, intron 16 of 22) -37165 NR_110085 101927446 Hs.734999 NR_110085 ENSG00000105793 LOC101927446 - uncharacterized LOC101927446 ncRNA 122.667-78 chr4 62278681 62278954 + 1.16667 NA Intergenic Intergenic -117052 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 396-8 chr9 94143413 94143951 + 1.16667 NA Intergenic AluSq2|SINE|Alu -32275 NR_029476 406881 NR_029476 ENSG00000199165 MIRLET7A1 LET7A1|MIRNLET7A1|let-7a-1 microRNA let-7a-1 ncRNA 348.667 chr14 72056794 72057177 + 1.16667 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 123458 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 257.334-7 chr4 149207469 149207938 + 1.16667 NA intron (NR_125887, intron 5 of 12) L2a|LINE|L2 53408 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 170.667-66 chr6 150642141 150642305 + 1.16667 NA intron (NM_001329804, intron 2 of 17) intron (NM_001329804, intron 2 of 17) 9259 NR_138140 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 179.834-4 chr13 82145191 82145411 + 1.16667 NA Intergenic Intergenic -918318 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 119.833-63 chr4 70838233 70838423 + 1.16667 NA intron (NM_002092, intron 1 of 9) intron (NM_002092, intron 1 of 9) 1175 NM_001098477 2926 Hs.309763 NM_002092 ENSG00000132463 GRSF1 - G-rich RNA sequence binding factor 1 protein-coding 163.334-7 chr7 66641942 66642131 + 1.16667 NA 3' UTR (NM_153033, exon 4 of 4) 3' UTR (NM_153033, exon 4 of 4) -12483 NR_110037 100996437 Hs.667408 NR_110037 LOC100996437 - uncharacterized LOC100996437 ncRNA 263.834-2 chr11 14951533 14952039 + 1.16667 NA Intergenic L2c|LINE|L2 20500 NM_001033953 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 188.5-29 chr2 88921814 88922028 + 1.16667 NA Intergenic L1MC1|LINE|L1 109551 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 241-16 chr3 43985355 43985732 + 1.16667 NA Intergenic MSTB1|LTR|ERVL-MaLR -128669 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 240.334-7 chr5 87064356 87064741 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 50406 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 280.334-3 chr6 13476904 13477213 + 1.16667 NA intron (NM_001242629, intron 1 of 1) intron (NM_001242629, intron 1 of 1) -4995 NR_038459 54438 Hs.484686 NM_018988 ENSG00000145990 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 243.667-16 chr18 8687580 8687895 + 1.16667 NA Intergenic AluSx1|SINE|Alu 19884 NR_120598 100287082 Hs.439434 NR_120598 ENSG00000265962 GACAT2 MTCL1-AS1|MTCL1AS1 gastric cancer associated transcript 2 ncRNA 280 chr1 32631733 32632134 + 1.16667 NA intron (NM_001366255, intron 4 of 6) intron (NM_001366255, intron 4 of 6) 18617 NM_001366278 339487 Hs.655921 NM_178547 ENSG00000176261 ZBTB8OS ARCH|ARCH2 zinc finger and BTB domain containing 8 opposite strand protein-coding 237.167-24 chr8 131276751 131276985 + 1.16667 NA Intergenic MLT1I|LTR|ERVL-MaLR -235959 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 350.667-8 chr5 20428438 20428909 + 1.16667 NA intron (NM_001349558, intron 1 of 15) L1PA8|LINE|L1 123122 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 213.167-27 chr6 100550264 100550564 + 1.16667 NA intron (NM_006828, intron 36 of 41) intron (NM_006828, intron 36 of 41) -86739 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 236.834-10 chr5 31972672 31972908 + 1.16667 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) -36631 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 242.5-26 chr9 93081631 93081961 + 1.16667 NA intron (NM_001287005, intron 5 of 5) intron (NM_001287005, intron 5 of 5) -14421 NR_160513 84270 Hs.434213 NM_032310 ENSG00000165233 CARD19 BinCARD|C9orf89 caspase recruitment domain family member 19 protein-coding 199.167-10 chr12 32657364 32657644 + 1.16667 NA Intergenic AluJb|SINE|Alu -21696 NM_001278466 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 321.334-3 chr8 25190260 25190670 + 1.16667 NA intron (NM_024940, intron 1 of 51) Charlie4a|DNA|hAT-Charlie 5776 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 304.667-17 chr6 134783874 134784285 + 1.16667 NA Intergenic AluJo|SINE|Alu 166022 NM_001193480 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 318-3 chr14 22427888 22428320 + 1.16667 NA intron (NR_148363, intron 1 of 2) intron (NR_148363, intron 1 of 2) 4649 NR_148363 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 292.667-15 chr5 90910995 90911555 + 1.16667 NA intron (NR_003149, intron 83 of 89) intron (NR_003149, intron 83 of 89) 352478 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 178.834-2 chr2 115870379 115870555 + 1.16667 NA Intergenic Intergenic 526652 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 134.834-2 chr2 25448109 25448245 + 1.16667 NA intron (NM_033147, intron 12 of 19) L2c|LINE|L2 -105587 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 236.833-13 chr4 28369324 28369713 + 1.16667 NA Intergenic Intergenic -450064 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 194.667-61 chr8 69050767 69051060 + 1.16667 NA intron (NR_039986, intron 2 of 4) L1MDa|LINE|L1 53277 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 469.334 chr8 81114578 81115374 + 1.16667 NA Intergenic Intergenic -2908 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 181.667-15 chr15 96062441 96062669 + 1.16667 NA Intergenic Intergenic 65286 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 227.667-29 chr8 78731195 78731512 + 1.16667 NA Intergenic Intergenic -6979 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 236.334-3 chr15 68845234 68845495 + 1.16667 NA Intergenic L1MB3|LINE|L1 -24469 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 401.167 chr1 107994230 107994612 + 1.16667 NA non-coding (NR_046653, exon 3 of 3) non-coding (NR_046653, exon 3 of 3) -29241 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 166.833-6 chr10 81791301 81791536 + 1.16667 NA Intergenic Intergenic -83776 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 253.5-25 chrX 42899627 42900009 + 1.16667 NA Intergenic Intergenic -121655 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 244.5-28 chr8 119314970 119315318 + 1.16667 NA Intergenic Intergenic -10027 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 273.501-2 chr17 51641976 51642298 + 1.16667 NA intron (NM_001082533, intron 7 of 9) intron (NM_001082533, intron 7 of 9) 206710 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 274.667-13 chr7 127881809 127882139 + 1.16667 NA intron (NM_014390, intron 12 of 23) AluJo|SINE|Alu -115535 NR_027330 27099 Hs.657377 NM_014411 ENSG00000279078 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 ncRNA 138.333-19 chr11 40253401 40253600 + 1.16667 NA intron (NM_001258419, intron 4 of 6) MIRb|SINE|MIR 39630 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 256.501 chr7 67480310 67480637 + 1.16667 NA Intergenic Intergenic 144497 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 198.167-26 chr4 84730045 84730282 + 1.16667 NA intron (NM_014991, intron 44 of 67) Arthur1A|DNA|hAT-Tip100 147036 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 151.167-23 chr18 2724957 2725284 + 1.16667 NA intron (NM_015295, intron 21 of 47) intron (NM_015295, intron 21 of 47) 69233 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 313.167-6 chr9 32242140 32242666 + 1.16667 NA Intergenic L1MD2|LINE|L1 -142200 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 235.167-24 chr5 32461559 32461851 + 1.16667 NA Intergenic Intergenic -16965 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 125.667-19 chr11 104125754 104125941 + 1.16667 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) 38300 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 260.167-12 chr20 10030477 10030784 + 1.16667 NA intron (NR_040710, intron 3 of 4) intron (NR_040710, intron 3 of 4) -4357 NM_001303472 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 384.667-2 chr2 119248511 119249160 + 1.16667 NA non-coding (NR_046721, exon 1 of 2) non-coding (NR_046721, exon 1 of 2) 236 NR_046721 100874111 Hs.704682 NR_046721 ENSG00000229867 STEAP3-AS1 - STEAP3 antisense RNA 1 ncRNA 176.334-4 chr19 28126219 28126422 + 1.16667 NA Intergenic Intergenic -332380 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 121.5-89 chr6 49606253 49606451 + 1.16667 NA intron (NM_000324, intron 9 of 9) intron (NM_000324, intron 9 of 9) 30522 NM_000324 6005 Hs.120950 NM_000324 ENSG00000112077 RHAG CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1 Rh associated glycoprotein protein-coding 250.834-3 chr2 16100471 16100885 + 1.16667 NA Intergenic Intergenic 50251 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 164.834 chr2 33154366 33154528 + 1.16667 NA intron (NM_206943, intron 5 of 33) intron (NM_206943, intron 5 of 33) 19850 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 127.667-71 chr5 23718008 23718142 + 1.16667 NA Intergenic MER31A|LTR|ERV1 210420 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 117.333-89 chr5 122558540 122558723 + 1.16667 NA Intergenic Intergenic 25969 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 385.334 chr22 42011796 42012497 + 1.16667 NA intron (NM_152613, intron 1 of 5) L1M4|LINE|L1 13358 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 172.333-74 chr8 92378673 92378944 + 1.16667 NA Intergenic Intergenic -275423 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 154-69 chr7 13032281 13032517 + 1.16667 NA Intergenic Intergenic 344766 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 166.5-21 chr15 96725665 96725939 + 1.16667 NA Intergenic Intergenic 55852 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 161.334-4 chr17 48231325 48231598 + 1.16667 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -62886 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 149-20 chr12 60634289 60634456 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 945002 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 231.834-6 chr22 29866222 29866495 + 1.16667 NA Intergenic Intergenic -16811 NM_153050 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 123.834-4 chr19 30003354 30003468 + 1.16667 NA intron (NM_001252641, intron 4 of 10) intron (NM_001252641, intron 4 of 10) 61172 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 176-45 chr8 42294200 42294372 + 1.16667 NA intron (NR_033818, intron 5 of 21) intron (NR_033818, intron 5 of 21) 22984 NM_001556 3551 Hs.597664 NM_001556 ENSG00000104365 IKBKB IKK-beta|IKK2|IKKB|IMD15|IMD15A|IMD15B|NFKBIKB inhibitor of nuclear factor kappa B kinase subunit beta protein-coding 353.834 chr20 4423238 4423672 + 1.16667 NA Intergenic MIR|SINE|MIR -174168 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 237.5-35 chr8 137365523 137365825 + 1.16667 NA Intergenic MIRb|SINE|MIR 47914 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 264.667-8 chr14 58554182 58554458 + 1.16667 NA Intergenic MLT1H|LTR|ERVL-MaLR -79748 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 387.834-2 chr10 86488313 86489073 + 1.16667 NA intron (NM_001318328, intron 4 of 18) L1MC4|LINE|L1 33091 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 266.167-22 chr8 136398978 136399520 + 1.16667 NA Intergenic L1MA5|LINE|L1 -131549 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 213.5-19 chr2 146826548 146827075 + 1.16667 NA Intergenic Intergenic 239754 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 265.667-19 chr6 96815632 96815913 + 1.16667 NA intron (NM_030784, intron 1 of 1) intron (NM_030784, intron 1 of 1) 21705 NM_001143957 81491 Hs.221364 NM_030784 ENSG00000112218 GPR63 PSP24(beta)|PSP24B G protein-coupled receptor 63 protein-coding 150.5-16 chr12 7691505 7691765 + 1.16667 NA intron (NM_020634, intron 1 of 1) Charlie4a|DNA|hAT-Charlie 4140 NM_020634 9573 Hs.86232 NM_020634 ENSG00000184344 GDF3 KFS3|MCOP7|MCOPCB6 growth differentiation factor 3 protein-coding 280.834 chr10 61169149 61169650 + 1.16667 NA Intergenic Intergenic 153124 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 178-24 chr2 209547602 209547799 + 1.16667 NA intron (NM_001039538, intron 2 of 14) MIR|SINE|MIR -31636 NM_001363913 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 255.834-2 chr13 55428088 55428440 + 1.16667 NA Intergenic L1M2|LINE|L1 253810 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 319.667-14 chr7 6252442 6252886 + 1.16667 NA intron (NM_001367581, intron 1 of 13) intron (NM_001367581, intron 1 of 13) 19960 NM_001367581 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 145.667-7 chr1 199507954 199508163 + 1.16667 NA Intergenic Intergenic 359460 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 342.167-4 chr4 140330486 140330981 + 1.16667 NA intron (NR_033939, intron 2 of 4) intron (NR_033939, intron 2 of 4) -12710 NM_001153446 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 232.667-17 chr3 37350067 37350422 + 1.16667 NA intron (NM_001172713, intron 21 of 22) intron (NM_001172713, intron 21 of 22) -36025 NM_178344 339883 Hs.475945 NM_178339 ENSG00000198590 C3orf35 APRG1 chromosome 3 open reading frame 35 protein-coding 154.834-2 chr12 119723440 119723658 + 1.16667 NA intron (NM_007174, intron 27 of 46) intron (NM_007174, intron 27 of 46) -9825 NR_031589 100302274 NR_031589 ENSG00000283768 MIR1178 MIRN1178|hsa-mir-1178 microRNA 1178 ncRNA 247.5-15 chr18 35688696 35689012 + 1.16667 NA intron (NM_020474, intron 5 of 10) intron (NM_020474, intron 5 of 10) 34285 NM_020474 2589 Hs.514806 NM_020474 ENSG00000141429 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 197.167-47 chr5 127323238 127323487 + 1.16667 NA intron (NM_001308119, intron 2 of 14) CR1_Mam|LINE|CR1 32566 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 165.167-44 chr5 127322709 127322921 + 1.16667 NA intron (NM_001308119, intron 2 of 14) L1MC4|LINE|L1 32019 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 208.5-19 chr17 44495419 44495655 + 1.16667 NA intron (NM_001002909, intron 1 of 7) intron (NM_001002909, intron 1 of 7) 7869 NM_001304942 23131 Hs.463129 NM_001002909 ENSG00000186566 GPATCH8 GPATC8|KIAA0553 G-patch domain containing 8 protein-coding 253.167-5 chr2 67171016 67171631 + 1.16667 NA intron (NR_038844, intron 3 of 7) intron (NR_038844, intron 3 of 7) -42085 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 249.334-10 chr8 114500724 114501046 + 1.16667 NA Intergenic Intergenic -1063946 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 287.334 chr5 74223709 74224178 + 1.16667 NA Intergenic L1ME4c|LINE|L1 84382 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 308.334-2 chr12 14276045 14276561 + 1.16667 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -89329 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 261.001-3 chr5 25466439 25466714 + 1.16667 NA Intergenic Intergenic 275623 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 128.833-29 chr16 24189928 24190231 + 1.16667 NA intron (NM_002738, intron 15 of 16) intron (NM_002738, intron 15 of 16) -13037 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 180.167-3 chr1 178238468 178238776 + 1.16667 NA intron (NM_170692, intron 1 of 17) (AC)n|Simple_repeat|Simple_repeat -102829 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 186.833-5 chr10 64521216 64521493 + 1.16667 NA Intergenic L1MEd|LINE|L1 -304174 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 170.667-56 chr5 59593025 59593209 + 1.16667 NA intron (NM_001165899, intron 3 of 16) A-rich|Low_complexity|Low_complexity -5492 NM_001364604 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 350.333-2 chr18 54794192 54794587 + 1.16667 NA Intergenic Intergenic -34088 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 240.834 chr1 185296362 185296579 + 1.16667 NA TTS (NM_006469) TTS (NM_006469) 20773 NM_006469 10625 Hs.497183 NM_006469 ENSG00000116679 IVNS1ABP ARA3|FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 246-16 chr4 113348818 113349266 + 1.16667 NA intron (NM_001354275, intron 36 of 43) MIRb|SINE|MIR 56203 NM_001354280 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 160-13 chr10 50585274 50585474 + 1.16667 NA intron (NM_147156, intron 2 of 10) intron (NM_147156, intron 2 of 10) 38582 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 216.667-28 chr3 102093491 102093696 + 1.16667 NA Intergenic Intergenic -70112 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 114.5-99 chr9 12574937 12575122 + 1.16667 NA Intergenic Intergenic -118356 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 177.5-25 chr13 101749836 101750125 + 1.16667 NA intron (NM_175929, intron 3 of 4) MLT1A0|LTR|ERVL-MaLR 166665 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 126.5-35 chr17 56233448 56233589 + 1.16667 NA intron (NM_001370326, intron 3 of 20) intron (NM_001370326, intron 3 of 20) 80043 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 273-6 chr2 155042205 155042581 + 1.16667 NA Intergenic Intergenic 343698 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 334.501 chr14 51003270 51003707 + 1.16667 NA intron (NM_015163, intron 5 of 9) intron (NM_015163, intron 5 of 9) -59005 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 272.834 chr16 5993533 5993842 + 1.16667 NA Intergenic UCON19|Unknown|Unknown -25337 NM_001364800 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 176.667-32 chr2 58987201 58987488 + 1.16667 NA intron (NR_033873, intron 6 of 13) L1MEd|LINE|L1 -230364 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 235.167-29 chr7 95701308 95701579 + 1.16667 NA Intergenic L1MA6|LINE|L1 -71063 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 129.334-2 chr13 42405626 42405773 + 1.16667 NA Intergenic Intergenic -19193 NR_135319 105370177 NR_135319 ENSG00000283554 LINC02341 - long intergenic non-protein coding RNA 2341 ncRNA 131.333-8 chr10 52754300 52754520 + 1.16667 NA intron (NR_155748, intron 1 of 2) L1MEb|LINE|L1 994 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 261.667-15 chr15 57859985 57860329 + 1.16667 NA Intergenic L1MC4a|LINE|L1 153443 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 228.167-10 chr17 50935842 50936109 + 1.16667 NA Intergenic L2a|LINE|L2 -67997 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 343-5 chr5 131971967 131972379 + 1.16667 NA intron (NM_015256, intron 13 of 20) intron (NM_015256, intron 13 of 20) -26510 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 293.667-14 chr8 76020546 76021034 + 1.16667 NA Intergenic Intergenic -385864 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 267.833-6 chr14 66744969 66745263 + 1.16667 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 237709 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 268-6 chr18 60152788 60153201 + 1.16667 NA Intergenic Intergenic 219781 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 133.5-67 chr6 163927947 163928072 + 1.16667 NA Intergenic Intergenic -256525 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 241.667-27 chr4 88705721 88706031 + 1.16667 NA intron (NM_001271602, intron 24 of 24) intron (NM_001271602, intron 24 of 24) -3913 NR_002806 285512 Hs.744957 NR_002806 ENSG00000248019 FAM13A-AS1 FAM13A1OS|FAM13AOS|NCRNA00039 FAM13A antisense RNA 1 ncRNA 162-44 chr3 5228146 5228284 + 1.16667 NA Intergenic MIRb|SINE|MIR 22040 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 114.5-76 chr5 103861967 103862185 + 1.16667 NA Intergenic Intergenic -299287 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 207-15 chr16 56035278 56035684 + 1.16667 NA Intergenic L1MD1|LINE|L1 -79450 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 124-36 chr14 75062933 75063092 + 1.16667 NA intron (NR_126393, intron 2 of 3) intron (NR_126393, intron 2 of 3) 1012 NM_001302616 97 Hs.18573 NM_001107 ENSG00000119640 ACYP1 ACYPE acylphosphatase 1 protein-coding 147.5-82 chr8 107528208 107528369 + 1.16667 NA Intergenic Intergenic -30370 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 188.834 chr1 184588926 184589180 + 1.16667 NA intron (NM_030806, intron 3 of 5) intron (NM_030806, intron 3 of 5) 165805 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 193.834-6 chr3 109951163 109951404 + 1.16667 NA Intergenic L1MB8|LINE|L1 348455 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 357.167-2 chr2 42888924 42889543 + 1.16667 NA Intergenic MER41B|LTR|ERV1 -96650 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 140-42 chr20 37457244 37457404 + 1.16667 NA Intergenic L1PA15|LINE|L1 62979 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 190.5-25 chr17 67854152 67854418 + 1.16667 NA exon (NM_004459, exon 2 of 30) exon (NM_004459, exon 2 of 30) 28782 NM_182641 2186 Hs.444200 NM_004459 ENSG00000171634 BPTF FAC1|FALZ|NEDDFL|NURF301 bromodomain PHD finger transcription factor protein-coding 248.834-3 chr10 126429610 126430016 + 1.16667 NA non-coding (NR_146939, exon 10 of 12) non-coding (NR_146939, exon 10 of 12) 3883 NR_148989 728158 Hs.646701 NR_148989 LOC728158 - uncharacterized LOC728158 ncRNA 480.5-2 chr2 207299473 207300259 + 1.16667 NA Intergenic L1MC2|LINE|L1 -30442 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 480.001 chr1 111498173 111498728 + 1.16667 NA TTS (NM_000677) TTS (NM_000677) 5183 NM_020683 57413 Hs.281342 NM_020683 ENSG00000121933 TMIGD3 AD026 transmembrane and immunoglobulin domain containing 3 protein-coding 171.333-23 chr14 22433576 22433936 + 1.16667 NA intron (NR_148361, intron 2 of 4) SVA_E|Retroposon|SVA -1003 NR_148362 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 251.167-9 chr2 179297060 179297395 + 1.16667 NA Intergenic AluJo|SINE|Alu -32395 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 362.334-5 chr9 117576763 117577226 + 1.16667 NA Intergenic L1MD1|LINE|L1 -71612 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 288.5-9 chr5 21875279 21875554 + 1.16667 NA intron (NM_004061, intron 6 of 14) MIRb|SINE|MIR -9038 NR_132787 106635539 NR_132787 SNORA105A - small nucleolar RNA, H/ACA box 105A snoRNA 245.167-4 chr2 154672428 154672792 + 1.16667 NA Intergenic Intergenic -25971 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 334.667-3 chr10 116926614 116927046 + 1.16667 NA intron (NM_001127211, intron 11 of 16) intron (NM_001127211, intron 11 of 16) -77108 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 169.667-63 chr6 35757004 35757277 + 1.16667 NA Intergenic AluSx1|SINE|Alu -19454 NR_104469 389383 Hs.259563 NM_207409 ENSG00000196748 CLPSL2 AAAL3045|C6orf126|UNQ3045|dJ510O8.5 colipase like 2 protein-coding 269-15 chr7 103791772 103792186 + 1.16667 NA intron (NM_005045, intron 3 of 64) L1MB7|LINE|L1 197537 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 143-53 chr4 30427839 30428027 + 1.16667 NA Intergenic Intergenic -292436 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 161.5-51 chr8 104219706 104220013 + 1.16667 NA intron (NM_001348498, intron 20 of 24) intron (NM_001348498, intron 20 of 24) -3476 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 247.501 chr1 188706131 188706421 + 1.16667 NA Intergenic MSTD|LTR|ERVL-MaLR 1262648 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 254.667 chr1 112487212 112487558 + 1.16667 NA intron (NM_001291880, intron 1 of 4) MER47A|DNA|TcMar-Tigger 20844 NM_001291880 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 190.5-34 chr2 140758763 140759008 + 1.16667 NA intron (NM_018557, intron 35 of 90) intron (NM_018557, intron 35 of 90) -172200 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 264.834-3 chr6 141804237 141804535 + 1.16667 NA Intergenic Intergenic 284413 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 207.167-4 chr1 197256979 197257187 + 1.16667 NA intron (NM_001257965, intron 1 of 14) MLT2B3|LTR|ERVL -11121 NM_001257966 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 284.334-5 chr5 44515290 44515683 + 1.16667 NA Intergenic Intergenic -5204 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 330.167-5 chr5 128987876 128988510 + 1.16667 NA intron (NM_001017372, intron 2 of 9) HAL1|LINE|L1 22705 NM_001017372 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 233.334-4 chr3 18755243 18755613 + 1.16667 NA Intergenic Intergenic -309836 NM_001322872 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 199.667-50 chr5 31627567 31627871 + 1.16667 NA Intergenic L2b|LINE|L2 -11412 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 168.334-2 chr21 16136593 16136766 + 1.16667 NA intron (NR_111005, intron 1 of 6) intron (NR_111005, intron 1 of 6) -44719 NR_136551 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 275.167-13 chr5 41374729 41375096 + 1.16667 NA intron (NM_001005473, intron 2 of 2) intron (NM_001005473, intron 2 of 2) -113443 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 153.333-73 chr7 27772377 27772556 + 1.16667 NA intron (NM_001362794, intron 5 of 16) intron (NM_001362794, intron 5 of 16) 32371 NM_001079864 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 165.5-27 chr17 50389463 50389705 + 1.16667 NA intron (NM_018509, intron 4 of 6) intron (NM_018509, intron 4 of 6) 7939 NM_018509 55379 Hs.370927 NM_018509 ENSG00000108829 LRRC59 PRO1855|p34 leucine rich repeat containing 59 protein-coding 282.833-2 chr18 14099889 14100290 + 1.16667 NA 3' UTR (NM_145287, exon 3 of 3) 3' UTR (NM_145287, exon 3 of 3) 32346 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 138.834-5 chr8 26084941 26085164 + 1.16667 NA Intergenic L1MD3|LINE|L1 -39639 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 260.167-6 chr12 3332459 3332750 + 1.16667 NA intron (NR_148995, intron 1 of 11) MLT1A|LTR|ERVL-MaLR 33518 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 164.334-4 chr17 66320584 66320851 + 1.16667 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 18104 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 202.167-28 chr5 154404180 154404394 + 1.16667 NA intron (NM_198321, intron 8 of 11) intron (NM_198321, intron 8 of 11) 41535 NR_037897 386627 Hs.652021 NR_037897 SAP30L-AS1 GALNT10-AS1 SAP30L antisense RNA 1 (head to head) ncRNA 135.667-91 chr5 131192098 131192356 + 1.16667 NA intron (NM_181705, intron 4 of 4) L1MA5|LINE|L1 21283 NM_181705 90624 Hs.115467 NM_181705 ENSG00000186687 LYRM7 C5orf31|MC3DN8|MZM1L LYR motif containing 7 protein-coding 205.333-49 chr5 89205573 89205954 + 1.16667 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -301658 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 121-96 chr9 7172044 7172188 + 1.16667 NA intron (NM_001304339, intron 21 of 21) intron (NM_001304339, intron 21 of 21) 414766 NM_001354000 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 289.167-7 chr12 102780312 102780574 + 1.16667 NA Intergenic Intergenic 43956 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 171.333-18 chr11 27167260 27167513 + 1.16667 NA intron (NR_125767, intron 2 of 4) AluJb|SINE|Alu 51382 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 256.334-4 chr5 82490641 82491219 + 1.16667 NA Intergenic L2b|LINE|L2 211468 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 155-62 chr5 25166703 25166861 + 1.16667 NA intron (NR_147006, intron 2 of 4) intron (NR_147006, intron 2 of 4) 23874 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 229.167-38 chr9 23812979 23813234 + 1.16667 NA intron (NM_001351456, intron 2 of 8) intron (NM_001351456, intron 2 of 8) 8203 NM_001351465 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 277.334-4 chr7 17370918 17371285 + 1.16667 NA Intergenic Intergenic -3816 NR_110014 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 211-27 chr4 30665258 30665595 + 1.16667 NA Intergenic L1MEi|LINE|L1 -54943 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 208.5-20 chr17 53922567 53922766 + 1.16667 NA Intergenic Intergenic 99739 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 272.667-14 chr4 42204010 42204464 + 1.16667 NA Intergenic AluSp|SINE|Alu -51582 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 246.834-4 chr2 57949547 57949885 + 1.16667 NA intron (NM_001288838, intron 1 of 15) Tigger1|DNA|TcMar-Tigger 42065 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 196.501 chr8 77770054 77770243 + 1.16667 NA Intergenic L1MA3|LINE|L1 319451 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 249.5-30 chr6 112437276 112437583 + 1.16667 NA Intergenic Intergenic 90099 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 158-56 chr8 112588762 112589132 + 1.16667 NA intron (NM_001363185, intron 20 of 66) intron (NM_001363185, intron 20 of 66) -54546 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 212.334-6 chr7 44776327 44776631 + 1.16667 NA Intergenic Intergenic -20202 NM_001300981 5478 Hs.356331 NM_021130 ENSG00000196262 PPIA CYPA|CYPH|HEL-S-69p peptidylprolyl isomerase A protein-coding 198.167-4 chr11 83565218 83565475 + 1.16667 NA intron (NM_001142699, intron 19 of 27) intron (NM_001142699, intron 19 of 27) 117079 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 123-37 chr18 57825514 57825731 + 1.16667 NA Intergenic AluJr|SINE|Alu -22307 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 143.5-82 chr8 46549886 46550071 + 1.16667 NA Intergenic AluSq2|SINE|Alu 67665 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 178 chr1 87123771 87124034 + 1.16667 NA Intergenic L4_A_Mam|LINE|RTE-X -5863 NR_026989 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 232.167-10 chr14 24317052 24317316 + 1.16667 NA 3' UTR (NM_001143919, exon 2 of 2) 3' UTR (NM_001143919, exon 2 of 2) 4077 NM_181657 1241 Hs.567248 NM_181657 ENSG00000213903 LTB4R BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7 leukotriene B4 receptor protein-coding 180.667-10 chr10 92561959 92562304 + 1.16667 NA intron (NM_001322795, intron 1 of 25) MER102c|DNA|hAT-Charlie 11375 NM_001322796 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 114.333-84 chr3 27245395 27245686 + 1.16667 NA intron (NM_199347, intron 24 of 24) MLT1H|LTR|ERVL-MaLR -29017 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 264.834-2 chr16 46997798 46998141 + 1.16667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -24295 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 153.167-51 chr6 118026795 118026961 + 1.16667 NA intron (NM_001029858, intron 1 of 7) L1ME1|LINE|L1 -59025 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 275.667-14 chr2 167132910 167133345 + 1.16667 NA intron (NR_046665, intron 1 of 1) MIR3|SINE|MIR 7828 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 290.167-15 chr8 118743073 118743401 + 1.16667 NA Intergenic Intergenic -121274 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 425.834-3 chr8 69222550 69223068 + 1.16667 NA Intergenic Intergenic -118619 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 171.667-49 chr22 24401721 24401981 + 1.16667 NA intron (NM_001254732, intron 13 of 14) MER5B|DNA|hAT-Charlie -21746 NM_001278500 135 Hs.197029 NM_000675 ENSG00000128271 ADORA2A A2aR|ADORA2|RDC8 adenosine A2a receptor protein-coding 238.834-2 chr11 80528480 80528821 + 1.16667 NA Intergenic L3|LINE|CR1 234153 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 324.501-3 chr8 132518370 132518786 + 1.16667 NA Intergenic Intergenic -37483 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 350.334-2 chr4 128662154 128662972 + 1.16667 NA Intergenic AluJb|SINE|Alu -147137 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 222.5-34 chr8 139861609 139861893 + 1.16667 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -158628 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 212.667-21 chr17 41937024 41937410 + 1.16667 NA intron (NR_146621, intron 5 of 9) intron (NR_146621, intron 5 of 9) 6600 NM_031421 83538 Hs.201134 NM_031421 ENSG00000204815 TTC25 - tetratricopeptide repeat domain 25 protein-coding 152.167-85 chrX 67679136 67679277 + 1.16667 NA intron (NM_001011645, intron 3 of 8) intron (NM_001011645, intron 3 of 8) 134583 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 268.334-6 chr2 220881044 220881313 + 1.16667 NA Intergenic Intergenic 691126 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 193.501 chr5 133973684 133973851 + 1.16667 NA intron (NM_003374, intron 8 of 8) intron (NM_003374, intron 8 of 8) 5078 NR_134247 105379183 Hs.543907 NR_134247 LOC105379183 - uncharacterized LOC105379183 ncRNA 248.5-7 chr21 14154421 14154723 + 1.16667 NA intron (NM_001303000, intron 7 of 9) intron (NM_001303000, intron 7 of 9) 52377 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 293.834-2 chr22 26476426 26476749 + 1.16667 NA intron (NR_146315, intron 4 of 14) AluJr|SINE|Alu 2901 NR_073136 89781 Hs.474436 NM_022081 ENSG00000100099 HPS4 BLOC3S2|LE HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 protein-coding 165.333-32 chr2 135512844 135513180 + 1.16667 NA intron (NM_032143, intron 1 of 20) L1M4|LINE|L1 17573 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 197.334-5 chrX 72633296 72633567 + 1.16667 NA intron (NM_002637, intron 16 of 31) MLT1A1|LTR|ERVL-MaLR -55518 NR_110391 101928259 Hs.666679 NR_110391 ENSG00000231944 PHKA1-AS1 - PHKA1 antisense RNA 1 ncRNA 199.001 chr18 12913514 12913707 + 1.16667 NA Intergenic Intergenic -29275 NM_080423 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 144.667-66 chr4 12858506 12858653 + 1.16667 NA Intergenic L1MA9|LINE|L1 625761 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 208-24 chr3 71787539 71787807 + 1.16667 NA Intergenic Intergenic -2525 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 297.834 chr18 4656914 4657213 + 1.16667 NA Intergenic Intergenic -201756 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 140.833-60 chr8 49577753 49577964 + 1.16667 NA Intergenic Intergenic -65678 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 293.667-12 chr6 60688241 60688681 + 1.16667 NA Intergenic L1ME3Cz|LINE|L1 -885669 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 134-36 chr14 35783197 35783383 + 1.16667 NA intron (NM_014990, intron 1 of 40) L1ME2|LINE|L1 -20359 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 181.5-64 chrX 29957110 29957387 + 1.16667 NA TTS (NM_014271) TTS (NM_014271) -258315 NM_002364 4113 Hs.113824 NM_002364 ENSG00000099399 MAGEB2 CT3.2|DAM6|MAGE-XP-2 MAGE family member B2 protein-coding 188.167-6 chr10 94029546 94029832 + 1.16667 NA intron (NM_001288989, intron 1 of 32) intron (NM_001288989, intron 1 of 32) 35758 NM_001288989 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 232.833-8 chr14 77997871 77998284 + 1.16667 NA Intergenic L1ME1|LINE|L1 -172296 NM_001366426 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 254.667-14 chr2 55325405 55325645 + 1.16667 NA intron (NM_001254943, intron 17 of 33) L1ME2|LINE|L1 43206 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 221.834 chr14 58203495 58203777 + 1.16667 NA intron (NM_018477, intron 2 of 12) intron (NM_018477, intron 2 of 12) 3487 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 319.667-2 chr1 230959936 230960378 + 1.16667 NA intron (NM_024525, intron 2 of 22) L2b|LINE|L2 18704 NM_001122835 79573 Hs.424788 NM_024525 ENSG00000143643 TTC13 - tetratricopeptide repeat domain 13 protein-coding 219.834-10 chrX 41531326 41531682 + 1.16667 NA intron (NM_003688, intron 24 of 26) intron (NM_003688, intron 24 of 26) 84044 NM_022567 60506 Hs.302019 NM_022567 ENSG00000188937 NYX CLRP|CSNB1|CSNB1A|CSNB4|NBM1 nyctalopin protein-coding 173.833-63 chr9 31144233 31144504 + 1.16667 NA Intergenic Intergenic 237122 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 165.667-79 chrX 68054806 68055018 + 1.16667 NA intron (NM_002547, intron 21 of 24) intron (NM_002547, intron 21 of 24) 378583 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 550.667-2 chr3 188326723 188327452 + 1.16667 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 101682 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 155.167-26 chr2 237080459 237080637 + 1.16667 NA Intergenic L1MB7|LINE|L1 -4893 NM_198189 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 180.667-30 chr17 82641405 82641591 + 1.16667 NA intron (NM_019613, intron 2 of 9) MER21A|LTR|ERVL 6946 NM_019613 56270 Hs.132161 NM_019613 ENSG00000141580 WDR45B NEDSBAS|WDR45L|WIPI-3|WIPI3 WD repeat domain 45B protein-coding 217.334-3 chr15 59687231 59687852 + 1.16667 NA intron (NM_001368059, intron 1 of 8) AluSx|SINE|Alu 1385 NM_001320675 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 217.667-40 chr6 48770616 48770986 + 1.16667 NA Intergenic Intergenic 692452 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 374.001-2 chrX 114017860 114018343 + 1.16667 NA Intergenic AluSg|SINE|Alu -79883 NR_131204 105463123 Hs.550218 NR_131204 XACT - X active specific transcript ncRNA 291.667-8 chr11 113459300 113459601 + 1.16667 NA intron (NM_016574, intron 1 of 6) MIR3|SINE|MIR -9362 NR_036183 100422855 NR_036183 ENSG00000265140 MIR4301 - microRNA 4301 ncRNA 223.833-24 chr8 50348952 50349385 + 1.16667 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 185037 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 165-40 chr5 11052785 11053009 + 1.16667 NA intron (NM_001288715, intron 15 of 20) intron (NM_001288715, intron 15 of 20) -291663 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 249.667-43 chr7 111311036 111311558 + 1.16667 NA intron (NM_032549, intron 3 of 5) ERVL-B4-int|LTR|ERVL 220170 NM_018334 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 184.834-6 chr3 125536227 125536860 + 1.16667 NA intron (NM_022776, intron 11 of 12) Charlie1a|DNA|hAT-Charlie -16341 NR_073435 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 240.334-6 chr2 192897910 192898133 + 1.16667 NA Intergenic Intergenic 148176 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 237.334-6 chr3 76433506 76433808 + 1.16667 NA Intergenic Intergenic -606442 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 263.334 chr10 72987121 72987551 + 1.16667 NA Intergenic MER8|DNA|TcMar-Tigger -32530 NM_032562 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 251.833-12 chr8 98249834 98250176 + 1.16667 NA intron (NR_135747, intron 3 of 11) intron (NR_135747, intron 3 of 11) 44230 NM_024759 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 363.668 chr4 122281551 122281890 + 1.16667 NA exon (NM_015312, exon 50 of 84) exon (NM_015312, exon 50 of 84) -97291 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 127.667-13 chr10 118194549 118194686 + 1.16667 NA intron (NR_026940, intron 3 of 3) L1ME4c|LINE|L1 -147676 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 311.667 chr13 72298410 72298882 + 1.16667 NA Intergenic Intergenic 428983 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 204.834-7 chr5 114310654 114310976 + 1.16667 NA Intergenic Intergenic -51255 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 432.667 chr14 52628101 52628914 + 1.16667 NA intron (NR_148417, intron 4 of 7) L1ME2z|LINE|L1 67051 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 228.834 chr10 20876100 20876327 + 1.16667 NA intron (NM_006393, intron 5 of 27) intron (NM_006393, intron 5 of 27) 21389 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 322.334 chr1 56543442 56543875 + 1.16667 NA intron (NM_003713, intron 1 of 5) intron (NM_003713, intron 1 of 5) 35905 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 394.167-2 chr4 48640478 48640961 + 1.16667 NA intron (NM_015030, intron 3 of 63) L1MC2|LINE|L1 139580 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 246.667-23 chr6 82408447 82408818 + 1.16667 NA Intergenic Intergenic 44388 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 231.5-7 chr18 2780273 2780644 + 1.16667 NA intron (NM_015295, intron 44 of 47) intron (NM_015295, intron 44 of 47) -66548 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 188.5-22 chr17 62768699 62769159 + 1.16667 NA intron (NM_001288780, intron 4 of 10) L1MC4|LINE|L1 37711 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 159.167-43 chr4 13442501 13442779 + 1.16667 NA intron (NM_001017979, intron 4 of 6) intron (NM_001017979, intron 4 of 6) 41700 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 356.834-2 chr7 9823092 9823789 + 1.16667 NA Intergenic Intergenic 189170 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 229.5-20 chr3 107663379 107663707 + 1.16667 NA intron (NM_001276286, intron 3 of 16) L1ME3E|LINE|L1 140581 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 161.333-12 chr11 82785319 82785596 + 1.16667 NA Intergenic L1PB4|LINE|L1 -51593 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 152.167-4 chr1 197024478 197024636 + 1.16667 NA Intergenic L2|LINE|L2 42710 NM_001994 2165 Hs.435782 NM_001994 ENSG00000143278 F13B FXIIIB coagulation factor XIII B chain protein-coding 163.167-46 chr8 57402992 57403357 + 1.16667 NA Intergenic Intergenic 59387 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 240.334-3 chr14 63245069 63245346 + 1.16667 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 40764 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 326.667-4 chr4 99308623 99309013 + 1.16667 NA intron (NM_001286650, intron 9 of 9) L1ME4a|LINE|L1 12583 NM_000668 125 Hs.4 NM_000668 ENSG00000196616 ADH1B ADH2|HEL-S-117 alcohol dehydrogenase 1B (class I), beta polypeptide protein-coding 245.667-35 chr8 130927455 130927870 + 1.16667 NA intron (NM_001115, intron 5 of 17) L1MA8|LINE|L1 113247 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 160.834-6 chr8 123754025 123754200 + 1.16667 NA Intergenic L1MA6|LINE|L1 -14327 NM_001317918 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 136.167-40 chr2 119235503 119235704 + 1.16667 NA intron (NM_182915, intron 2 of 5) MER5A|DNA|hAT-Charlie 11769 NM_001008410 55240 Hs.647822 NM_018234 ENSG00000115107 STEAP3 AHMIO2|STMP3|TSAP6|dudlin-2|dudulin-2|pHyde STEAP3 metalloreductase protein-coding 140.5-59 chr5 33471510 33471733 + 1.16667 NA Intergenic AluSz|SINE|Alu 30845 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 320.501 chr8 120289972 120290375 + 1.16667 NA intron (NM_021110, intron 34 of 47) intron (NM_021110, intron 34 of 47) 154977 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 119.667-74 chr5 14550512 14550694 + 1.16667 NA Intergenic Intergenic -31189 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 145.333-75 chr6 122029949 122030150 + 1.16667 NA Intergenic Intergenic -369502 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 114.667-94 chr4 91394555 91394732 + 1.16667 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 882659 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 181.167-28 chr8 6910134 6910388 + 1.16667 NA Intergenic MIR|SINE|MIR 15815 NM_001926 1671 Hs.711 NM_001926 ENSG00000164822 DEFA6 DEF6|HD-6 defensin alpha 6 protein-coding 282.333-13 chr3 135645229 135645671 + 1.16667 NA Intergenic L1PA13|LINE|L1 -320278 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 285.167-10 chr8 59221567 59221837 + 1.16667 NA Intergenic L1MEc|LINE|L1 102492 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 215.167-23 chr6 51953127 51953333 + 1.16667 NA intron (NM_138694, intron 36 of 66) intron (NM_138694, intron 36 of 66) 134383 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 315.834-4 chr2 143301476 143301891 + 1.16667 NA intron (NM_018460, intron 6 of 13) (TA)n|Simple_repeat|Simple_repeat 172264 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 248.167-26 chr8 82801185 82801504 + 1.16667 NA Intergenic Tigger2|DNA|TcMar-Tigger -110760 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 167-32 chr2 188051989 188052167 + 1.16667 NA intron (NR_126396, intron 2 of 2) intron (NR_126396, intron 2 of 2) 235613 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 307-7 chr7 48988660 48989137 + 1.16667 NA Intergenic L1MC4a|LINE|L1 64351 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 254.834-4 chr2 107436260 107436549 + 1.16667 NA Intergenic L1M4|LINE|L1 -86879 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 269-10 chr21 27559123 27559590 + 1.16667 NA Intergenic AluSz|SINE|Alu -163023 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 166.667-64 chr8 121564422 121564715 + 1.16667 NA Intergenic L1MA9|LINE|L1 -74778 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 233.167-23 chr3 83584943 83585165 + 1.16667 NA Intergenic L1MA4|LINE|L1 1284521 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 177.5-58 chr4 40280437 40280622 + 1.16667 NA Intergenic AluJr|SINE|Alu -26656 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 197.834-2 chr2 12100628 12100823 + 1.16667 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 93609 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 192-4 chr1 215876269 215876570 + 1.16667 NA intron (NM_206933, intron 43 of 71) intron (NM_206933, intron 43 of 71) -196046 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 253.834-5 chr2 36421238 36421509 + 1.16667 NA intron (NM_016441, intron 2 of 16) intron (NM_016441, intron 2 of 16) 65595 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 169.5-60 chr6 61511746 61511940 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr -62287 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 219.167-12 chr17 26809109 26809352 + 1.16667 NA Intergenic Intergenic 280011 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 161.667-36 chr17 76317006 76317219 + 1.16667 NA intron (NM_001366236, intron 7 of 9) AluSx|SINE|Alu -9432 NR_130649 84074 Hs.252739 NM_032134 ENSG00000129646 QRICH2 SPGF35 glutamine rich 2 protein-coding 151-39 chr21 27154721 27154882 + 1.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR -187713 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 148.167-75 chr6 105632252 105632439 + 1.16667 NA Intergenic L4_C_Mam|LINE|RTE-X -229263 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 122.5-19 chr12 10787394 10787565 + 1.16667 NA Intergenic L1MA9|LINE|L1 15148 NM_023919 50837 Hs.533754 NM_023919 ENSG00000121377 TAS2R7 T2R7|TRB4 taste 2 receptor member 7 protein-coding 117.334-5 chr8 105861282 105861406 + 1.16667 NA intron (NR_125796, intron 2 of 7) intron (NR_125796, intron 2 of 7) 199159 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 367.334 chr11 69560310 69560797 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 74992 NR_120543 101928292 Hs.736219 NR_120542 LINC01488 BRCAT8 long intergenic non-protein coding RNA 1488 ncRNA 224.667-19 chr20 43956937 43957382 + 1.16667 NA intron (NM_032883, intron 2 of 9) L1M5|LINE|L1 11263 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 227.334-10 chr3 146524760 146525031 + 1.16667 NA intron (NM_001363872, intron 4 of 7) intron (NM_001363872, intron 4 of 7) 19660 NM_001363872 5359 Hs.130759 NM_021105 ENSG00000188313 PLSCR1 MMTRA1B phospholipid scramblase 1 protein-coding 292.5-10 chr2 136574916 136575321 + 1.16667 NA Intergenic Intergenic -190427 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 238.001-2 chr5 158640115 158640342 + 1.16667 NA Intergenic MIRb|SINE|MIR -230455 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 355.5 chr12 763756 764342 + 1.16667 NA intron (NM_001184985, intron 1 of 27) L2|LINE|L2 11126 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 238.667-28 chr5 128437061 128437755 + 1.16667 NA intron (NM_001999, intron 7 of 64) L1ME3F|LINE|L1 100837 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 171.834-5 chr2 205116025 205116239 + 1.16667 NA intron (NM_205863, intron 6 of 21) intron (NM_205863, intron 6 of 21) -566368 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 260.834 chr2 112765587 112766013 + 1.16667 NA Intergenic Intergenic -1191 NM_152515 150468 Hs.434250 NM_152515 ENSG00000169607 CKAP2L - cytoskeleton associated protein 2 like protein-coding 161.667-57 chr3 138267570 138267924 + 1.16667 NA intron (NM_001282342, intron 13 of 19) intron (NM_001282342, intron 13 of 19) 62104 NM_001349024 347736 Hs.660992 NM_178130 ENSG00000181322 NME9 NM23-H9|TXL-2|TXL2|TXNDC6 NME/NM23 family member 9 protein-coding 118.5-18 chr11 38243308 38243443 + 1.16667 NA Intergenic Intergenic 304774 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 294.167-9 chr7 53390701 53391094 + 1.16667 NA Intergenic L1MB7|LINE|L1 355264 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 265.334-2 chr1 100778565 100778857 + 1.16667 NA Intergenic Intergenic 58969 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 252.001-2 chr13 54622097 54622384 + 1.16667 NA Intergenic Intergenic -310192 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 277.167-5 chr4 86751679 86752203 + 1.16667 NA intron (NM_006264, intron 19 of 46) (TG)n|Simple_repeat|Simple_repeat 97443 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 246.167-14 chr2 86490381 86490784 + 1.16667 NA intron (NM_018433, intron 23 of 25) intron (NM_018433, intron 23 of 25) 49121 NM_001146688 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 143.167-12 chr11 72916753 72916897 + 1.16667 NA intron (NM_014824, intron 9 of 19) L1M4|LINE|L1 102414 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 181.167-5 chr12 26427500 26427707 + 1.16667 NA intron (NM_002223, intron 49 of 56) Tigger14a|DNA|TcMar-Tigger 232030 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 220.5 chr1 104993868 104994243 + 1.16667 NA Intergenic Intergenic 624880 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 133.167-15 chr12 28323191 28323414 + 1.16667 NA intron (NM_001352084, intron 6 of 11) L1M4|LINE|L1 -132564 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 218.834-4 chr21 27686463 27686781 + 1.16667 NA Intergenic L1M4|LINE|L1 -35757 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 216.834-3 chr11 80460621 80460939 + 1.16667 NA Intergenic L1MEc|LINE|L1 302023 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 115-49 chr22 27282365 27282526 + 1.16667 NA Intergenic Intergenic -28206 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 135.334-8 chr6 126279914 126280107 + 1.16667 NA Intergenic Intergenic -59779 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 282.501-3 chr2 119087292 119087647 + 1.16667 NA Intergenic Intergenic 71282 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 263.001-3 chr4 61039012 61039285 + 1.16667 NA Intergenic Intergenic -104508 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 176-36 chr5 73930473 73930732 + 1.16667 NA intron (NM_001080479, intron 36 of 36) intron (NM_001080479, intron 36 of 36) 117056 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 175.334-10 chr5 73111025 73111245 + 1.16667 NA Intergenic L1MB3|LINE|L1 -9440 NM_173490 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 196-24 chr14 58066808 58067099 + 1.16667 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 85260 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 400-8 chr9 25920934 25921382 + 1.16667 NA Intergenic L1MB1|LINE|L1 141102 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 243.667-21 chr3 71305987 71306235 + 1.16667 NA TTS (NR_126463) TTS (NR_126463) -1340 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 267.834-2 chr5 12461523 12461853 + 1.16667 NA Intergenic Intergenic -113169 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 216.667-11 chr13 28236635 28236856 + 1.16667 NA intron (NM_175854, intron 6 of 18) intron (NM_175854, intron 6 of 18) -97571 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 127.334-6 chr9 31688510 31688651 + 1.16667 NA Intergenic L1ME3G|LINE|L1 -307090 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 125.667-4 chr1 57644523 57644669 + 1.16667 NA intron (NM_001353980, intron 4 of 5) (AT)n|Simple_repeat|Simple_repeat -215985 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 222-24 chr21 18492284 18492594 + 1.16667 NA Intergenic MER103C|DNA|hAT-Charlie -88654 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 117.167-94 chr8 88338463 88338587 + 1.16667 NA Intergenic MIRc|SINE|MIR -11042 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 130.167-59 chr5 144502540 144502687 + 1.16667 NA Intergenic Intergenic 297222 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 272.333-11 chr16 79802416 79802879 + 1.16667 NA Intergenic MIRb|SINE|MIR 7398 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 189.834-5 chr2 125047703 125047951 + 1.16667 NA Intergenic Intergenic 1022540 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 149.667-48 chr22 46324810 46325168 + 1.16667 NA intron (NM_016426, intron 8 of 11) MLT1A0|LTR|ERVL-MaLR -10412 NR_104240 55687 Hs.439524 NM_018006 ENSG00000100416 TRMU LCAL3|MTO2|MTU1|TRMT|TRMT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 313.834-5 chr7 94627166 94627911 + 1.16667 NA intron (NM_001346717, intron 3 of 9) L2a|LINE|L2 28595 NM_001346713 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 121-13 chr11 36585188 36585338 + 1.16667 NA Intergenic Intergenic -9230 NM_001276726 119710 Hs.159376 NM_138787 ENSG00000166352 C11orf74 HEPIS|NWC chromosome 11 open reading frame 74 protein-coding 142.834-4 chr22 28269298 28269456 + 1.16667 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -190492 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 278.334-2 chr15 64343569 64343913 + 1.16667 NA intron (NM_001329606, intron 1 of 11) intron (NM_001329606, intron 1 of 11) 12432 NM_001329606 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 144.667-48 chr17 67188086 67188279 + 1.16667 NA intron (NM_001330447, intron 12 of 32) intron (NM_001330447, intron 12 of 32) -56594 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 177.334 chr1 55103401 55103864 + 1.16667 NA intron (NM_015306, intron 42 of 67) intron (NM_015306, intron 42 of 67) 63410 NR_110451 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 253.334-8 chr7 21359879 21360153 + 1.16667 NA Intergenic Intergenic -68067 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 188.167-41 chr5 141291844 141292154 + 1.16667 NA Intergenic ERVL-E-int|LTR|ERVL 12050 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 222.5-25 chr5 12889632 12890035 + 1.16667 NA intron (NR_147005, intron 4 of 4) intron (NR_147005, intron 4 of 4) 143053 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 225.5-47 chr8 77467794 77468075 + 1.16667 NA intron (NR_125830, intron 2 of 2) intron (NR_125830, intron 2 of 2) 17237 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 190.667-36 chr4 31605302 31605676 + 1.16667 NA Intergenic ERV24B_Prim-int|LTR|ERV1 98945 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 302.334-7 chr7 42559837 42560225 + 1.16667 NA Intergenic THE1B-int|LTR|ERVL-MaLR 146416 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 187.5-49 chr8 41768398 41768570 + 1.16667 NA intron (NM_001142446, intron 1 of 42) MIRb|SINE|MIR 29138 NM_000037 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 446.667-2 chr6 153816277 153817183 + 1.16667 NA Intergenic Intergenic -193766 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 142.834-3 chr14 46296535 46296706 + 1.16667 NA intron (NR_102702, intron 3 of 3) L1MA4|LINE|L1 -174739 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 194.167-19 chr4 30288563 30288778 + 1.16667 NA Intergenic Intergenic -431699 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 257.167-8 chr2 197240705 197241044 + 1.16667 NA intron (NM_153697, intron 1 of 9) intron (NM_153697, intron 1 of 9) 42883 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 313.334 chr21 22661088 22661558 + 1.16667 NA Intergenic Intergenic -417961 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 168.5-59 chr6 107926333 107926683 + 1.16667 NA intron (NM_007214, intron 2 of 20) AluJb|SINE|Alu 31700 NM_007214 11231 Hs.26904 NM_007214 ENSG00000025796 SEC63 DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L SEC63 homolog, protein translocation regulator protein-coding 336.5-6 chr8 13035877 13036377 + 1.16667 NA Intergenic Intergenic 23863 NM_001099677 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 237.834-2 chr10 113307446 113307698 + 1.16667 NA Intergenic AluJr|SINE|Alu 178301 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 153.167-41 chr5 21589472 21589634 + 1.16667 NA TTS (NR_027026) TTS (NR_027026) 130073 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 292.333-2 chr1 189082142 189082597 + 1.16667 NA Intergenic Intergenic 1393641 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 274.334-11 chr8 129743838 129744249 + 1.16667 NA Intergenic L1MEc|LINE|L1 42581 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 253.667-24 chr9 121439444 121439794 + 1.16667 NA Intergenic Intergenic 60408 NR_045211 2681 Hs.97469 NR_003191 ENSG00000204136 GGTA1P GGTA|GGTA1|GLYT2|a1/3GTP glycoprotein alpha-galactosyltransferase 1, pseudogene pseudo 293.5-2 chr12 8097909 8098265 + 1.16667 NA TTS (NR_024260) TTS (NR_024260) 15813 NM_015509 25977 Hs.555927 NM_015509 ENSG00000089818 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 187.334-3 chr2 98257451 98257657 + 1.16667 NA intron (NM_001345864, intron 15 of 21) L1MB5|LINE|L1 -88601 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 384-2 chr3 19561246 19561827 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR -246605 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 226.167-30 chr8 86827901 86828254 + 1.16667 NA Intergenic Intergenic -38338 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 222-4 chr10 11016115 11016312 + 1.16667 NA intron (NM_001326339, intron 1 of 11) intron (NM_001326339, intron 1 of 11) -1659 NM_001326342 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 183.334-4 chr2 205775572 205775884 + 1.16667 NA intron (NM_201266, intron 15 of 16) intron (NM_201266, intron 15 of 16) 93227 NM_018534 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 270.167-10 chr2 181255014 181255347 + 1.16667 NA intron (NR_130784, intron 2 of 4) intron (NR_130784, intron 2 of 4) 50472 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 152.667-69 chr5 77523881 77524067 + 1.16667 NA Intergenic UCON39|DNA|TcMar-Tigger -31658 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 225.667 chr1 74844437 74844674 + 1.16667 NA Intergenic L2a|LINE|L2 -111147 NM_001134759 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 365.501 chr1 40230753 40231191 + 1.16667 NA intron (NM_012421, intron 6 of 7) intron (NM_012421, intron 6 of 7) -16965 NM_001008740 127391 Hs.406265 NM_001008740 ENSG00000188800 TMCO2 dJ39G22.2 transmembrane and coiled-coil domains 2 protein-coding 169.5-35 chr20 14380358 14380536 + 1.16667 NA intron (NM_001351663, intron 3 of 17) L1MB4|LINE|L1 -42780 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 263.167-3 chr14 46170260 46170620 + 1.16667 NA intron (NR_102702, intron 1 of 3) L1MEf|LINE|L1 106281 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 282.334-4 chr9 82792118 82792431 + 1.16667 NA Intergenic Intergenic 270868 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 195.334-7 chr3 167770755 167770996 + 1.16667 NA intron (NM_005025, intron 1 of 8) L1MC5|LINE|L1 35152 NM_005025 5274 Hs.478153 NM_005025 ENSG00000163536 SERPINI1 PI12|neuroserpin serpin family I member 1 protein-coding 276.834 chr2 60828928 60829205 + 1.16667 NA Intergenic Intergenic 52248 NR_033980 400957 Hs.170358 NR_033980 ENSG00000228414 LINC01185 - long intergenic non-protein coding RNA 1185 ncRNA 164.834-3 chr5 55449628 55450145 + 1.16667 NA intron (NR_103485, intron 4 of 6) intron (NR_103485, intron 4 of 6) 59040 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 143.667-14 chr1 216549354 216549640 + 1.16667 NA intron (NM_001243518, intron 6 of 7) intron (NM_001243518, intron 6 of 7) -126049 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 171.167-10 chr10 74354553 74354818 + 1.16667 NA intron (NM_001369124, intron 4 of 9) MIR3|SINE|MIR 174639 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 218.001 chr11 25121932 25122567 + 1.16667 NA Intergenic ERVL-E-int|LTR|ERVL 625196 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 240.167-6 chr12 131999474 131999785 + 1.16667 NA intron (NM_015409, intron 12 of 52) AluSx1|SINE|Alu -31595 NR_002979 677829 Hs.742405 NR_002979 ENSG00000208892 SNORA49 ACA49 small nucleolar RNA, H/ACA box 49 snoRNA 283.167-8 chr4 86053193 86053686 + 1.16667 NA intron (NM_001363657, intron 11 of 13) intron (NM_001363657, intron 11 of 13) -66367 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 391.334-4 chr8 120375774 120376274 + 1.16667 NA Intergenic Intergenic 69126 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 249.5-13 chr2 167380098 167380405 + 1.16667 NA Intergenic L1PA16|LINE|L1 192879 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 298.834-3 chr2 204073524 204073802 + 1.16667 NA Intergenic Intergenic 136915 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 179.667-31 chr20 48710285 48710544 + 1.16667 NA intron (NM_020820, intron 5 of 39) intron (NM_020820, intron 5 of 39) 117585 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 231.167-15 chr22 44718767 44718967 + 1.16667 NA intron (NM_181334, intron 2 of 14) L1MB7|LINE|L1 16663 NM_181333 55615 Hs.102336 NM_015366 ENSG00000186654 PRR5 FLJ20185k|PP610|PROTOR-1|PROTOR1 proline rich 5 protein-coding 355.167-2 chr16 79502646 79503164 + 1.16667 NA Intergenic L1ME2|LINE|L1 97832 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 174.333-31 chr20 11710021 11710410 + 1.16667 NA Intergenic L1M4a2|LINE|L1 160500 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 230.501 chr2 80021585 80021789 + 1.16667 NA intron (NM_001282598, intron 7 of 17) L1MA8|LINE|L1 -155104 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 245.334-7 chr5 129856604 129856859 + 1.16667 NA Intergenic Intergenic -47734 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 301.334-4 chr3 184668102 184668405 + 1.16667 NA Intergenic L1MB3|LINE|L1 43811 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 MAGE-F1 MAGE family member F1 protein-coding 126-18 chr11 81875663 81875834 + 1.16667 NA Intergenic Intergenic 15088 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 351.167-9 chr6 69833297 69833625 + 1.16667 NA Intergenic MER2|DNA|TcMar-Tigger -33095 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 123.334-6 chr2 107037248 107037364 + 1.16667 NA Intergenic L1PA14|LINE|L1 -150197 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 126.667-49 chr21 20300088 20300241 + 1.16667 NA Intergenic Intergenic -41479 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 231.167-22 chr4 47334039 47334628 + 1.16667 NA intron (NM_000812, intron 5 of 8) intron (NM_000812, intron 5 of 8) 129369 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 153.334-4 chr11 104937529 104938082 + 1.16667 NA Intergenic L1PA16|LINE|L1 -19630 NR_034079 643733 Hs.713751 NR_034078 ENSG00000235505 CASP17P - caspase 17, pseudogene pseudo 200-2 chr1 223343766 223344103 + 1.16667 NA intron (NM_017982, intron 2 of 8) intron (NM_017982, intron 2 of 8) 20242 NM_001037175 55061 Hs.497841 NM_017982 ENSG00000143502 SUSD4 PRO222 sushi domain containing 4 protein-coding 204.167-36 chr9 37682256 37682455 + 1.16667 NA intron (NM_001371223, intron 1 of 15) intron (NM_001371223, intron 1 of 15) 14346 NM_001371223 315 chr10 36405394 36406073 + 1.16667 NA Intergenic Intergenic 627431 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 215.667-33 chr4 44157318 44157603 + 1.16667 NA Intergenic Intergenic 140398 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 245.5-20 chr5 64990898 64991349 + 1.16667 NA intron (NM_005869, intron 13 of 13) intron (NM_005869, intron 13 of 13) 222193 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 236.833-22 chr9 91125511 91125925 + 1.16667 NA intron (NR_135306, intron 2 of 2) HAL1ME|LINE|L1 6656 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 350.667-3 chr14 68024356 68024729 + 1.16667 NA intron (NM_133509, intron 7 of 10) L1PA16|LINE|L1 200950 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 163-25 chr18 8630772 8631060 + 1.16667 NA intron (NM_001025300, intron 2 of 5) AluSx1|SINE|Alu 21471 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 260.667-8 chr19 35901311 35901691 + 1.16667 NA promoter-TSS (NM_139239) promoter-TSS (NM_139239) -663 NM_001365706 84807 Hs.466531 NM_032721 ENSG00000167604 NFKBID IkBNS|IkappaBNS|TA-NFKBH NFKB inhibitor delta protein-coding 117.667-77 chr3 85963335 85963473 + 1.16667 NA intron (NM_001256504, intron 9 of 10) intron (NM_001256504, intron 9 of 10) -135354 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 298.167 chr10 54041718 54042129 + 1.16667 NA intron (NM_001354411, intron 19 of 34) L3|LINE|CR1 -444307 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 167.834-4 chr9 33972518 33972711 + 1.16667 NA intron (NM_001370059, intron 7 of 28) intron (NM_001370059, intron 7 of 28) -19760 NR_003685 100113379 NR_003685 ENSG00000238886 SNORD121A - small nucleolar RNA, C/D box 121A snoRNA 190-4 chr1 172656557 172656787 + 1.16667 NA Intergenic Intergenic -2336 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 161-37 chr21 44780467 44780644 + 1.16667 NA intron (NM_001202489, intron 1 of 3) intron (NM_001202489, intron 1 of 3) 21265 NM_001202489 7327 Hs.529420 NM_003343 ENSG00000184787 UBE2G2 UBC7 ubiquitin conjugating enzyme E2 G2 protein-coding 243.667-18 chr20 31247417 31247871 + 1.16667 NA Intergenic LTR54|LTR|ERV1 -10020 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 352.834-2 chr3 88074803 88075127 + 1.16667 NA intron (NM_001366093, intron 1 of 7) intron (NM_001366093, intron 1 of 7) 15710 NM_001350134 55279 Hs.591650 NM_018293 ENSG00000175105 ZNF654 - zinc finger protein 654 protein-coding 248.5-21 chr8 56949061 56949504 + 1.16667 NA Intergenic Intergenic 44585 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 306.834 chr1 41063352 41063662 + 1.16667 NA intron (NM_001172218, intron 11 of 15) L1MC1|LINE|L1 -41752 NM_001168247 200172 Hs.194609 NM_144990 ENSG00000171790 SLFNL1 - schlafen like 1 protein-coding 180.833-38 chr6 54380603 54380906 + 1.16667 NA intron (NM_014464, intron 10 of 10) intron (NM_014464, intron 10 of 10) 72313 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 190.833-17 chr15 39121657 39122071 + 1.16667 NA Intergenic Intergenic -128805 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 141.834 chr12 25380206 25380344 + 1.16667 NA Intergenic Intergenic -129346 NM_033360 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 301.334-3 chr2 223637548 223637936 + 1.16667 NA Intergenic Intergenic -35381 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 202.333-39 chr6 40103408 40103728 + 1.16667 NA Intergenic Intergenic -169106 NM_001358531 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 243.001-2 chr5 174779343 174779691 + 1.16667 NA Intergenic L1ME3G|LINE|L1 27783 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 221.5-21 chr2 181170059 181170264 + 1.16667 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 46324 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 329.834-2 chr2 225651894 225652190 + 1.16667 NA 3' UTR (NM_020864, exon 6 of 6) 3' UTR (NM_020864, exon 6 of 6) 251156 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 314-4 chr17 55829090 55829507 + 1.16667 NA Intergenic MIR3|SINE|MIR 78193 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 314.001 chr1 200369146 200369513 + 1.16667 NA intron (NR_040064, intron 3 of 4) intron (NR_040064, intron 3 of 4) 4463 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 283.5-18 chr9 76923798 76924147 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR -17858 NM_015225 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 207-38 chr4 61724174 61724523 + 1.16667 NA intron (NM_001371342, intron 4 of 20) intron (NM_001371342, intron 4 of 20) 437417 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 164.167-15 chr12 68580673 68580960 + 1.16667 NA Intergenic Intergenic -30083 NM_001010942 5908 Hs.369920 NM_015646 ENSG00000127314 RAP1B K-REV|RAL1B RAP1B, member of RAS oncogene family protein-coding 167.5-19 chr11 104867244 104867480 + 1.16667 NA Intergenic L1MA9|LINE|L1 31308 NR_034061 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 199.667-28 chr2 143867653 143867881 + 1.16667 NA Intergenic L1ME3D|LINE|L1 -69300 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 163.5 chr1 15613601 15613832 + 1.16667 NA Intergenic Intergenic -3742 NM_032341 84301 Hs.718857 NM_032341 ENSG00000197312 DDI2 - DNA damage inducible 1 homolog 2 protein-coding 355.667-2 chr17 61090395 61090970 + 1.16667 NA intron (NM_001330413, intron 23 of 25) AluSg|SINE|Alu 277022 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 461.167-2 chr3 146760186 146760870 + 1.16667 NA Intergenic Intergenic -154312 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 154-57 chr4 30849719 30849987 + 1.16667 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 129484 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 164.334-8 chr5 117264954 117265165 + 1.16667 NA Intergenic L1MEg|LINE|L1 -150453 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 165.667-70 chr8 51412096 51412371 + 1.16667 NA intron (NM_144651, intron 15 of 22) intron (NM_144651, intron 15 of 22) 397212 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 194 chr1 38373157 38373416 + 1.16667 NA Intergenic MER4E1|LTR|ERV1 -101910 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 192.5-45 chr6 77969160 77969446 + 1.16667 NA Intergenic MIR|SINE|MIR 316264 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 233.834-2 chr1 222077790 222078176 + 1.16667 NA Intergenic Intergenic -99463 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 217.5-46 chr7 17700492 17700821 + 1.16667 NA Intergenic L1MA9|LINE|L1 -141747 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 116.833-46 chr5 3702248 3702456 + 1.16667 NA Intergenic L1ME5|LINE|L1 106520 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 338.5-7 chrX 78209032 78209590 + 1.16667 NA Intergenic L1PA10|LINE|L1 -69661 NM_015975 51616 Hs.592248 NM_015975 ENSG00000187325 TAF9B DN-7|DN7|TAF9L|TAFII31L|TFIID-31 TATA-box binding protein associated factor 9b protein-coding 168-44 chr4 30784987 30785303 + 1.16667 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 64776 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 198-43 chr4 74520326 74520619 + 1.16667 NA Intergenic Intergenic 75336 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 178-16 chr13 94441808 94441993 + 1.16667 NA intron (NM_001129889, intron 9 of 9) L1MB3|LINE|L1 37782 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 130.167-16 chr12 24160121 24160263 + 1.16667 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -52229 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 130.333-64 chr3 191782423 191782609 + 1.16667 NA Intergenic Intergenic 321353 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 219.5-9 chr12 61203276 61203510 + 1.16667 NA Intergenic Intergenic 989446 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 193.334-2 chr2 80750399 80750816 + 1.16667 NA Intergenic L1MD1|LINE|L1 437228 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 180.667-53 chr4 38520632 38520919 + 1.16667 NA intron (NR_110951, intron 1 of 7) THE1B|LTR|ERVL-MaLR 2405 NR_110951 101928776 Hs.586147 NR_110951 ENSG00000249534 LINC01258 - long intergenic non-protein coding RNA 1258 ncRNA 134-12 chr1 247543534 247543740 + 1.16667 NA intron (NM_001281834, intron 3 of 6) LTR37B|LTR|ERV1 -5497 NM_145278 148823 Hs.732113 NM_145278 ENSG00000169224 GCSAML C1orf150 germinal center associated signaling and motility like protein-coding 148.5-41 chr2 147299554 147299752 + 1.16667 NA Intergenic Intergenic -544864 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 302.834-4 chr9 8249625 8249901 + 1.16667 NA Intergenic L2|LINE|L2 -449985 NM_001318059 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 206.833-32 chr9 28294472 28294673 + 1.16667 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 424733 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 355.168 chr4 163490711 163491270 + 1.16667 NA Intergenic L1ME3B|LINE|L1 -3700 NM_018352 55319 Hs.267446 NM_018352 ENSG00000198498 TMA16 C4orf43 translation machinery associated 16 homolog protein-coding 126.334-3 chr14 84768845 84768958 + 1.16667 NA Intergenic Intergenic -503031 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 243.501-5 chr5 59964303 59964575 + 1.16667 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -70713 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 291.667-3 chr10 31820622 31821095 + 1.16667 NA intron (NM_001270696, intron 9 of 17) L1MC|LINE|L1 88068 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 307 chr12 26154338 26154739 + 1.16667 NA Intergenic MIRb|SINE|MIR -29501 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 178.667-20 chr18 2032143 2032314 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR 539277 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 150.667 chr1 14620296 14620482 + 1.16667 NA intron (NM_201628, intron 1 of 14) MIR|SINE|MIR 21672 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 239.667-8 chr14 54447094 54447474 + 1.16667 NA Intergenic Intergenic -5910 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 333.167 chr4 60781163 60781692 + 1.16667 NA Intergenic Intergenic -141192 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 289.167-14 chr3 99693570 99693951 + 1.16667 NA intron (NM_001850, intron 2 of 4) Tigger3b|DNA|TcMar-Tigger 55166 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 243.501-4 chr3 158293006 158293243 + 1.16667 NA intron (NM_001271838, intron 4 of 9) intron (NM_001271838, intron 4 of 9) 183035 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 180.834-6 chr7 110346602 110347074 + 1.16667 NA Intergenic Intergenic -386625 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 149-30 chr16 79878958 79879168 + 1.16667 NA Intergenic Intergenic 83814 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 317.334-2 chr12 85858244 85858534 + 1.16667 NA Intergenic Intergenic -15906 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 336.834-2 chrX 79771771 79772240 + 1.16667 NA Intergenic L1PA13|LINE|L1 -242748 NM_001109879 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 279.501 chr5 33564378 33564731 + 1.16667 NA intron (NM_001324512, intron 17 of 21) intron (NM_001324512, intron 17 of 21) 123778 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 206.834-2 chr10 62571897 62572176 + 1.16667 NA intron (NM_199452, intron 1 of 6) L1MC5a|LINE|L1 51588 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 202.667-7 chr11 44026569 44026884 + 1.16667 NA Intergenic L1MB7|LINE|L1 -21255 NM_001363113 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 226.5-38 chr9 31304423 31304742 + 1.16667 NA Intergenic Intergenic 76908 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 131.667-23 chr11 112981880 112982012 + 1.16667 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -18486 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 190.667-60 chr8 126124239 126124411 + 1.16667 NA Intergenic Intergenic -173128 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 163.667-6 chr1 172967789 172967948 + 1.16667 NA Intergenic L2b|LINE|L2 83095 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 166.334-7 chr8 89110927 89111099 + 1.16667 NA Intergenic L1MA9|LINE|L1 646698 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 306.834-5 chr4 67826604 67827210 + 1.16667 NA intron (NM_004262, intron 8 of 9) AluJr|SINE|Alu 57095 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 132.333-90 chr5 167381723 167381939 + 1.16667 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -191828 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 212.001 chr14 88050467 88050886 + 1.16667 NA intron (NR_046094, intron 2 of 3) intron (NR_046094, intron 2 of 3) -24364 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 318.334 chr19 35592928 35593416 + 1.16667 NA Intergenic AluJr|SINE|Alu -4723 NR_110750 102723617 Hs.579904 NR_110750 ENSG00000224910 LINC01766 - long intergenic non-protein coding RNA 1766 ncRNA 164.167-58 chr7 55565252 55565487 + 1.16667 NA intron (NM_001321244, intron 1 of 5) intron (NM_001321244, intron 1 of 5) 6499 NM_001321250 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 227.501 chr20 31760456 31760930 + 1.16667 NA intron (NM_012112, intron 4 of 17) intron (NM_012112, intron 4 of 17) 21403 NM_012112 22974 Hs.244580 NM_012112 ENSG00000088325 TPX2 C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100 TPX2 microtubule nucleation factor protein-coding 227.5-24 chr4 96215127 96215495 + 1.16667 NA Intergenic Intergenic -95392 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 361.667-6 chr4 99036166 99036650 + 1.16667 NA intron (NM_015143, intron 4 of 10) intron (NM_015143, intron 4 of 10) 39021 NR_037455 100500867 NR_037455 ENSG00000265213 MIR3684 - microRNA 3684 ncRNA 252-8 chr2 141723487 141724035 + 1.16667 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 407940 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 283-5 chr13 22612812 22613120 + 1.16667 NA Intergenic Intergenic 285215 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 147.834-4 chr5 19812241 19812622 + 1.16667 NA intron (NM_001349559, intron 3 of 12) L1MEd|LINE|L1 73841 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 171.667-65 chr5 79293710 79293899 + 1.16667 NA intron (NM_152405, intron 4 of 10) intron (NM_152405, intron 4 of 10) 57673 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 225.5-7 chr10 95074815 95075160 + 1.16667 NA Intergenic L1MA2|LINE|L1 -5490 NM_001198855 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 302.334-6 chr6 10978498 10978811 + 1.16667 NA Intergenic L2c|LINE|L2 -24565 NR_125851 101928191 Hs.638939 NR_125851 LOC101928191 - uncharacterized LOC101928191 ncRNA 318.5-2 chr11 92287329 92287941 + 1.16667 NA intron (NM_001367949, intron 1 of 27) intron (NM_001367949, intron 1 of 27) 62601 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 311.5-9 chr21 24665263 24665650 + 1.16667 NA Intergenic Intergenic -175094 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 150.334-3 chr3 16921960 16922148 + 1.16667 NA intron (NM_001144382, intron 1 of 5).2 intron (NM_001144382, intron 1 of 5).2 -11036 NM_015184 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 181.834-9 chr7 39948050 39948325 + 1.16667 NA non-coding (NR_158201, exon 1 of 1) non-coding (NR_158201, exon 1 of 1) 1232 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 254.167-16 chr7 40342052 40342358 + 1.16667 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 207229 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 314.501 chr2 41437180 41437517 + 1.16667 NA Intergenic L1MA1|LINE|L1 -440207 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 223.667-15 chr2 79401143 79401431 + 1.16667 NA Intergenic L1M4|LINE|L1 99557 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 115.667-103 chr6 24735174 24735315 + 1.16667 NA Intergenic L1ME2z|LINE|L1 -16090 NM_030939 81688 Hs.744857 NM_030939 ENSG00000112308 C6orf62 Nbla00237|XTP12|dJ30M3.2 chromosome 6 open reading frame 62 protein-coding 164.5-16 chr12 12303027 12303234 + 1.16667 NA Intergenic L1MB8|LINE|L1 -36086 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 199.167-37 chr6 52147785 52148109 + 1.16667 NA promoter-TSS (NR_029903) promoter-TSS (NR_029903) -976 NR_029903 442890 NR_029903 ENSG00000199080 MIR133B MIRN133B|miRNA133B|mir-133b microRNA 133b ncRNA 227.834-4 chr21 35368284 35368558 + 1.16667 NA Intergenic L3|LINE|CR1 212343 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 252.167-4 chr12 71740012 71740454 + 1.16667 NA Intergenic MIR|SINE|MIR -14630 NM_014999 23011 Hs.524590 NM_014999 ENSG00000080371 RAB21 - RAB21, member RAS oncogene family protein-coding 155.667-90 chrX 142816325 142816503 + 1.16667 NA Intergenic Intergenic -209514 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 155.667-68 chr6 28139100 28139289 + 1.16667 NA Intergenic Intergenic -1878 NR_103456 100129195 Hs.659413 NR_103455 ENSG00000269293 ZSCAN16-AS1 - ZSCAN16 antisense RNA 1 ncRNA 137.167-43 chr3 36967746 36967997 + 1.16667 NA Intergenic HAL1ME|LINE|L1 -22817 NM_001329998 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 129.334-3 chr2 18580920 18581406 + 1.16667 NA intron (NM_001199104, intron 7 of 10) L1ME4c|LINE|L1 8406 NM_001002006 93034 Hs.744358 NM_033253 ENSG00000185013 NT5C1B AIRP|CN-IB|CN1B 5'-nucleotidase, cytosolic IB protein-coding 263.834-3 chr12 109012246 109012612 + 1.16667 NA intron (NM_018711, intron 1 of 15) L1MA8|LINE|L1 8639 NM_018711 55530 Hs.4221 NM_018711 ENSG00000166111 SVOP - SV2 related protein protein-coding 225.5-28 chr2 52389139 52389398 + 1.16667 NA intron (NR_135239, intron 2 of 2) intron (NR_135239, intron 2 of 2) 18620 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 151.334 chr10 96707864 96708129 + 1.16667 NA intron (NM_152309, intron 2 of 16) intron (NM_152309, intron 2 of 16) 12518 NM_152309 118788 Hs.310456 NM_152309 ENSG00000155629 PIK3AP1 BCAP phosphoinositide-3-kinase adaptor protein 1 protein-coding 136.167-79 chr9 32657362 32657546 + 1.16667 NA Intergenic Intergenic -21785 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 239.001-2 chr8 31091113 31091317 + 1.16667 NA intron (NM_000553, intron 15 of 34) intron (NM_000553, intron 15 of 34) -57859 NM_001323312 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 165.334-2 chr13 45144857 45145077 + 1.16667 NA intron (NM_004128, intron 2 of 7) L3|LINE|CR1 24457 NM_004128 2963 Hs.654582 NM_004128 ENSG00000188342 GTF2F2 BTF4|RAP30|TF2F2|TFIIF general transcription factor IIF subunit 2 protein-coding 184-39 chr4 55616858 55617116 + 1.16667 NA intron (NR_120489, intron 2 of 8) L3b|LINE|CR1 19311 NM_006681 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 272.333-21 chr6 106686917 106687333 + 1.16667 NA Intergenic L1MC4|LINE|L1 -8360 NR_149100 105377926 Hs.635821 NR_149100 ENSG00000229654 LINC02526 - long intergenic non-protein coding RNA 2526 ncRNA 130.5-71 chr7 18727897 18728085 + 1.16667 NA intron (NM_058176, intron 12 of 22) intron (NM_058176, intron 12 of 22) 218721 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 144.334-7 chr6 54562245 54562420 + 1.16667 NA Intergenic Intergenic 253891 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 170-18 chr14 60374271 60374564 + 1.16667 NA Intergenic L1MD1|LINE|L1 51221 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 268.167-8 chr5 42590928 42591381 + 1.16667 NA intron (NM_001242460, intron 1 of 7) intron (NM_001242460, intron 1 of 7) 25290 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 182.833-22 chr18 72715294 72715516 + 1.16667 NA Intergenic Intergenic 137977 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 202.834-5 chr6 133772645 133772958 + 1.16667 NA intron (NR_109982, intron 2 of 8) intron (NR_109982, intron 2 of 8) -48346 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 125.167-26 chr14 58284205 58284352 + 1.16667 NA intron (NR_029435, intron 2 of 3) intron (NR_029435, intron 2 of 3) -3755 NR_146595 55451 NR_146595 ENSG00000279636 LINC00216 C14orf107|NCRNA00216|PRO1617 long intergenic non-protein coding RNA 216 ncRNA 244.667-11 chr17 14467169 14467757 + 1.16667 NA Intergenic HAL1|LINE|L1 163723 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 292.5-6 chr13 30377874 30378241 + 1.16667 NA Intergenic MIR|SINE|MIR -4143 NR_024464 100188949 Hs.439791 NR_024464 ENSG00000238121 LINC00426 - long intergenic non-protein coding RNA 426 ncRNA 250.334-3 chr3 86306282 86306810 + 1.16667 NA Intergenic Intergenic -175397 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 207.167-8 chr12 42477574 42477910 + 1.16667 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) 5873 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 251.167-5 chr18 26277439 26277878 + 1.16667 NA intron (NM_005640, intron 5 of 14) Charlie1a|DNA|hAT-Charlie 51213 NM_001293725 6875 Hs.369519 NM_005640 ENSG00000141384 TAF4B SPGF13|TAF2C2|TAFII105 TATA-box binding protein associated factor 4b protein-coding 255.167-5 chr2 174107475 174107763 + 1.16667 NA intron (NM_001011708, intron 6 of 9) intron (NM_001011708, intron 6 of 9) 82339 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 114-89 chr7 14467586 14467734 + 1.16667 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) 373790 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 345.333-6 chr6 37887780 37888402 + 1.16667 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 68364 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 223.834-2 chr13 48721281 48721809 + 1.16667 NA Intergenic L1M5|LINE|L1 67616 NM_001308471 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 135.167-25 chr14 45996804 45996966 + 1.16667 NA Intergenic Intergenic -67274 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 138.334-7 chr2 236717969 236718222 + 1.16667 NA Intergenic L1M6B|LINE|L1 148270 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 310.334-3 chr19 33382456 33382877 + 1.16667 NA TTS (NM_001252296) TTS (NM_001252296) 8142 NM_001252296 1054 Hs.429666 NM_001806 ENSG00000153879 CEBPG GPE1BP|IG/EBP-1 CCAAT enhancer binding protein gamma protein-coding 231-10 chr17 21279384 21279653 + 1.16667 NA Intergenic Intergenic -5193 NM_001316332 5606 Hs.514012 NM_002756 ENSG00000034152 MAP2K3 MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 mitogen-activated protein kinase kinase 3 protein-coding 190.833-7 chr11 83235272 83235484 + 1.16667 NA intron (NM_001300975, intron 7 of 10) MIRc|SINE|MIR 41666 NM_001300976 338699 Hs.503438 NM_182603 ENSG00000137494 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 180.167-35 chr3 88978464 88978722 + 1.16667 NA Intergenic MER2B|DNA|TcMar-Tigger -129028 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 231-4 chr10 74445331 74445750 + 1.16667 NA intron (NM_001369124, intron 6 of 9) intron (NM_001369124, intron 6 of 9) 83784 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 179.5-35 chr7 89515673 89515903 + 1.16667 NA Intergenic Intergenic -603612 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 254.333-2 chr1 170390235 170390625 + 1.16667 NA Intergenic L1MB3|LINE|L1 -106222 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 208.834-5 chr12 109482650 109482893 + 1.16667 NA intron (NM_001270449, intron 2 of 8) intron (NM_001270449, intron 2 of 8) 5137 NM_130466 89910 Hs.374067 NM_130466 ENSG00000151148 UBE3B BPIDS|KOS ubiquitin protein ligase E3B protein-coding 228.5-27 chr5 43647907 43648177 + 1.16667 NA intron (NM_012343, intron 10 of 21) MIR|SINE|MIR -44812 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 315.834-6 chr5 158100861 158101219 + 1.16667 NA Intergenic Intergenic -241895 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 264.167-6 chr11 119988324 119988672 + 1.16667 NA Intergenic Intergenic 140355 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 240.334 chr11 91788041 91788397 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -436815 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 399.834 chr1 196010460 196011000 + 1.16667 NA Intergenic Intergenic 77985 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 265.334-14 chr5 127211595 127211897 + 1.16667 NA Intergenic Intergenic -79018 NM_001308119 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 159.5-28 chr20 25187319 25187470 + 1.16667 NA intron (NR_109994, intron 3 of 5) intron (NR_109994, intron 3 of 5) -8276 NM_001322380 955 Hs.500375 NM_001247 ENSG00000197586 ENTPD6 CD39L2|IL-6SAG|IL6ST2|NTPDase-6|dJ738P15.3 ectonucleoside triphosphate diphosphohydrolase 6 protein-coding 192.834-4 chr22 29651116 29651380 + 1.16667 NA intron (NM_181833, intron 4 of 4) intron (NM_181833, intron 4 of 4) 47615 NM_181825 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 187.834-3 chr8 113586328 113586553 + 1.16667 NA Intergenic AluJb|SINE|Alu -149501 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 216.667-5 chr11 58799390 58799734 + 1.16667 NA Intergenic L1PA16|LINE|L1 45142 NM_145016 219970 Hs.254271 NM_145016 ENSG00000156689 GLYATL2 BXMAS2-10|GATF-B glycine-N-acyltransferase like 2 protein-coding 232.834-3 chr21 24050271 24050567 + 1.16667 NA Intergenic Intergenic 270958 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 133.334-6 chr5 96904789 96904940 + 1.16667 NA intron (NM_001329229, intron 12 of 17) intron (NM_001329229, intron 12 of 17) 28925 NM_022350 64167 Hs.482910 NM_022350 ENSG00000164308 ERAP2 L-RAP|LRAP endoplasmic reticulum aminopeptidase 2 protein-coding 215-35 chr6 16914236 16914505 + 1.16667 NA Intergenic L1MEg|LINE|L1 -152880 NM_001128164 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 266.834-7 chr6 135198906 135199343 + 1.16667 NA intron (NR_134962, intron 10 of 14) intron (NR_134962, intron 10 of 14) 17816 NM_001161659 4602 Hs.606320 NM_005375 ENSG00000118513 MYB Cmyb|c-myb|c-myb_CDS|efg MYB proto-oncogene, transcription factor protein-coding 136.833-10 chr11 55704331 55704626 + 1.16667 NA Intergenic L1M3e|LINE|L1 39311 NM_001004704 219432 Hs.511921 NM_001004704 ENSG00000181903 OR4C6 OR11-138 olfactory receptor family 4 subfamily C member 6 protein-coding 168-23 chr16 73427099 73427424 + 1.16667 NA Intergenic Intergenic 40456 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 126.834-2 chr10 57690920 57691278 + 1.16667 NA Intergenic L1M2|LINE|L1 -386540 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 183.833-24 chr2 126545953 126546239 + 1.16667 NA Intergenic L1MCa|LINE|L1 -109839 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 266.334-5 chr7 23437147 23437567 + 1.16667 NA intron (NM_006547, intron 2 of 14) AluSq10|SINE|Alu 33134 NM_006547 10643 Hs.700696 NM_006547 ENSG00000136231 IGF2BP3 CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3 insulin like growth factor 2 mRNA binding protein 3 protein-coding 227.5-22 chr4 31160040 31160299 + 1.16667 NA Intergenic Intergenic -10975 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 273.501-4 chr9 85586338 85586636 + 1.16667 NA intron (NM_015239, intron 22 of 25) intron (NM_015239, intron 22 of 25) 155542 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 215.667-39 chr5 35197031 35197357 + 1.16667 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) 33293 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 202-42 chr8 70385997 70386306 + 1.16667 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 17239 NM_001321713 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 194.834-4 chr2 67353191 67353372 + 1.16667 NA Intergenic MLT1I|LTR|ERVL-MaLR -44052 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 132.833-21 chr14 76679430 76679727 + 1.16667 NA Intergenic MER41C|LTR|ERV1 -81890 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 356.834 chr4 139090914 139091295 + 1.16667 NA intron (NM_001371336, intron 4 of 8) AluY|SINE|Alu -6690 NM_001276457 1998 Hs.634040 NM_006874 ENSG00000109381 ELF2 EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 E74 like ETS transcription factor 2 protein-coding 266.501 chr1 82265191 82265583 + 1.16667 NA Intergenic Intergenic 462934 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 178.667-7 chr11 97665291 97665444 + 1.16667 NA Intergenic Intergenic 1156942 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 252.167-5 chr13 32764825 32765075 + 1.16667 NA intron (NM_015032, intron 31 of 34) intron (NM_015032, intron 31 of 34) 146702 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 231.5-24 chr7 130338535 130338816 + 1.16667 NA Intergenic Intergenic -6141 NM_001127442 93979 Hs.567642 NM_080385 ENSG00000158525 CPA5 - carboxypeptidase A5 protein-coding 301.5-9 chr3 105024254 105024649 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -342262 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 201.334-6 chr7 23545657 23545937 + 1.16667 NA Intergenic MER63B|DNA|hAT-Blackjack -13756 NM_001282758 29896 Hs.445652 NM_013293 ENSG00000164548 TRA2A AWMS1|HSU53209 transformer 2 alpha homolog protein-coding 242.501-2 chr6 126927185 126927444 + 1.16667 NA Intergenic Intergenic -191357 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 154.5-54 chr4 132078622 132078786 + 1.16667 NA Intergenic HERV16-int|LTR|ERVL 313866 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 282.001 chr12 111501915 111502275 + 1.16667 NA intron (NR_132311, intron 14 of 23) AluJb|SINE|Alu 67233 NM_001291424 10019 Hs.506784 NM_005475 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 285.834 chr1 162024618 162025014 + 1.16667 NA promoter-TSS (NM_001297713) promoter-TSS (NM_001297713) -351 NM_001347700 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 231.167-37 chr8 135173209 135173568 + 1.16667 NA Intergenic MER58A|DNA|hAT-Charlie -60743 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 265.167-15 chr8 82230640 82230932 + 1.16667 NA Intergenic THE1B|LTR|ERVL-MaLR -388500 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 174-56 chr7 91639542 91639782 + 1.16667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 241040 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 172.333-52 chr3 113692902 113693274 + 1.16667 NA intron (NM_001009899, intron 1 of 6) intron (NM_001009899, intron 1 of 6) 3554 NM_001009899 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 182.167-2 chr1 113653939 113654210 + 1.16667 NA intron (NM_001142782, intron 15 of 20) intron (NM_001142782, intron 15 of 20) 105081 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 251.334 chr14 29114618 29114990 + 1.16667 NA Intergenic Intergenic -329017 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 220.001-3 chr8 87062051 87062572 + 1.16667 NA intron (NM_173538, intron 4 of 10) (GTAT)n|Simple_repeat|Simple_repeat 195896 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 256.5-37 chr8 73262872 73263318 + 1.16667 NA Intergenic Intergenic -3593 NM_001243237 100130301 Hs.202296 NM_001243237 ENSG00000274443 C8orf89 - chromosome 8 open reading frame 89 protein-coding 206.667-10 chr10 108844416 108844701 + 1.16667 NA Intergenic L1PA16|LINE|L1 -775265 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 143-54 chr4 58994838 58994990 + 1.16667 NA intron (NR_133941, intron 1 of 2) intron (NR_133941, intron 1 of 2) -6760 NR_133940 105377245 Hs.112674 NR_133939 ENSG00000249382 LINC02619 - long intergenic non-protein coding RNA 2619 ncRNA 246.667-24 chr6 164544114 164544591 + 1.16667 NA Intergenic Intergenic 277711 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 213.667-24 chr3 88817565 88817820 + 1.16667 NA Intergenic L1MEf|LINE|L1 -289929 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 257.5-4 chr1 112459257 112459584 + 1.16667 NA 3' UTR (NM_018704, exon 6 of 6) 3' UTR (NM_018704, exon 6 of 6) 2413 NR_036210 100422976 NR_036210 ENSG00000283296 MIR4256 - microRNA 4256 ncRNA 299.334 chr5 11962556 11962934 + 1.16667 NA Intergenic Intergenic -58299 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 164.667-26 chr15 50825022 50825210 + 1.16667 NA Intergenic Intergenic -59410 NM_032802 84888 Hs.401537 NM_032802 ENSG00000138600 SPPL2A IMP3|PSL2 signal peptide peptidase like 2A protein-coding 189.167-4 chr1 161493596 161493846 + 1.16667 NA Intergenic MLT1C|LTR|ERVL-MaLR -11736 NM_001136219 2212 Hs.352642 NM_021642 ENSG00000143226 FCGR2A CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2 Fc fragment of IgG receptor IIa protein-coding 139.667-51 chr2 61465184 61465422 + 1.16667 NA intron (NM_014709, intron 1 of 79) Charlie4z|DNA|hAT-Charlie 5784 NM_014709 9736 Hs.644708 NM_014709 ENSG00000115464 USP34 - ubiquitin specific peptidase 34 protein-coding 138.167-37 chr18 69031497 69031666 + 1.16667 NA intron (NM_001093729, intron 9 of 9) intron (NM_001093729, intron 9 of 9) 233501 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 241.334-3 chr2 214036396 214036624 + 1.16667 NA intron (NR_047660, intron 12 of 14) L1MC4|LINE|L1 278443 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 114.667-135 chrX 98284522 98284782 + 1.16667 NA Intergenic (TTAATT)n|Simple_repeat|Simple_repeat -720117 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 118.667-89 chr4 173469366 173469549 + 1.16667 NA intron (NM_001329597, intron 1 of 3) intron (NM_001329597, intron 1 of 3) 49781 NM_001329597 11341 Hs.7122 NM_007281 ENSG00000164106 SCRG1 SCRG-1 stimulator of chondrogenesis 1 protein-coding 295.167-6 chr2 162606038 162606310 + 1.16667 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -162762 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 204.167-13 chr2 11210870 11211154 + 1.16667 NA intron (NM_001321643, intron 18 of 32) intron (NM_001321643, intron 18 of 32) 55545 NM_001282711 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 159.5-20 chr17 30183157 30183441 + 1.16667 NA intron (NM_032141, intron 6 of 6) intron (NM_032141, intron 6 of 6) 52398 NM_001045 6532 Hs.29792 NM_001045 ENSG00000108576 SLC6A4 5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT solute carrier family 6 member 4 protein-coding 132.5-42 chr18 35274973 35275128 + 1.16667 NA intron (NM_001166012, intron 1 of 4) L1M5|LINE|L1 15179 NM_001166012 100101467 Hs.619840 NM_001112734 ENSG00000186814 ZSCAN30 ZNF-WYM|ZNF397OS|ZNF917 zinc finger and SCAN domain containing 30 protein-coding 239.667-2 chr10 96932993 96933398 + 1.16667 NA intron (NM_001170766, intron 4 of 8) intron (NM_001170766, intron 4 of 8) 100250 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 245.834-4 chr18 5633986 5634287 + 1.16667 NA Intergenic L1MC4|LINE|L1 -5145 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 133.167-57 chr6 145153624 145153827 + 1.16667 NA Intergenic Intergenic 533152 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 283.334-8 chr4 46100595 46101296 + 1.16667 NA intron (NM_173536, intron 1 of 8) intron (NM_173536, intron 1 of 8) 23109 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 156.834-4 chr2 107319067 107319234 + 1.16667 NA intron (NR_049853, intron 1 of 3) intron (NR_049853, intron 1 of 3) 30375 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 140-51 chr3 67113144 67113346 + 1.16667 NA Intergenic Intergenic -112219 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 130.667-14 chr11 104645221 104645376 + 1.16667 NA Intergenic Intergenic -35996 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 420.834 chr1 112344628 112345161 + 1.16667 NA Intergenic Intergenic -51320 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 253.667-16 chr6 70670772 70671154 + 1.16667 NA intron (NM_001281440, intron 1 of 10) intron (NM_001281440, intron 1 of 10) 2433 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 172.667-37 chr2 21218379 21218602 + 1.16667 NA Intergenic Intergenic 94504 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 135.333-44 chr2 153745864 153746151 + 1.16667 NA Intergenic Intergenic -125915 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 163.5-20 chr13 90654958 90655250 + 1.16667 NA Intergenic MIRb|SINE|MIR 161816 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 183.833-14 chr15 83221040 83221336 + 1.16667 NA Intergenic L1MEg|LINE|L1 -13365 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 172.667-21 chr14 24536872 24537253 + 1.16667 NA Intergenic AluJb|SINE|Alu -28797 NM_001308083 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 157.167-68 chr9 94908535 94908874 + 1.16667 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 36850 NR_147614 101928119 Hs.630906 NR_147613 LOC101928119 - uncharacterized LOC101928119 ncRNA 228.667-23 chr2 153097656 153098103 + 1.16667 NA Intergenic AluSx1|SINE|Alu 379242 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 180.667-24 chr14 62089641 62089887 + 1.16667 NA intron (NM_001367661, intron 8 of 8) intron (NM_001367661, intron 8 of 8) -27593 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 153.167-12 chr11 111387808 111388069 + 1.16667 NA Intergenic Intergenic -8663 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 homeobox associating factor 1 protein-coding 236.834-11 chr5 92364227 92364489 + 1.16667 NA Intergenic Intergenic -981041 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 139.5-81 chrX 47796925 47797061 + 1.16667 NA Intergenic Tigger7|DNA|TcMar-Tigger -39909 NM_007137 347344 Hs.114246 NM_007137 ENSG00000197779 ZNF81 HFZ20|MRX45|dJ54B20.6 zinc finger protein 81 protein-coding 183.334-2 chr1 212053970 212054173 + 1.16667 NA intron (NM_001286229, intron 4 of 12) L1MEf|LINE|L1 -2020 NR_026911 100131205 Hs.126774 NR_026911 ENSG00000220749 RPL21P28 RPL21_8_160 ribosomal protein L21 pseudogene 28 pseudo 266.167-19 chr6 165378200 165378502 + 1.16667 NA intron (NM_006661, intron 19 of 22) MamRep605|LTR?|LTR? -68746 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 156.5-88 chr9 31138967 31139184 + 1.16667 NA Intergenic Intergenic 242415 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 389.834-4 chr22 25822304 25822731 + 1.16667 NA intron (NM_001318245, intron 12 of 43) L2a|LINE|L2 80329 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 119.667-45 chr2 101489801 101489994 + 1.16667 NA Intergenic L1MB2|LINE|L1 -14785 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 284.001-2 chr8 137635683 137636164 + 1.16667 NA Intergenic LTR68|LTR|ERV1 -222335 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 236.5-20 chr3 35928496 35928851 + 1.16667 NA Intergenic Intergenic 184197 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 198.834-2 chr10 110635082 110635335 + 1.16667 NA Intergenic L1MD|LINE|L1 -9128 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 182.833-53 chr7 47982689 47982953 + 1.16667 NA Intergenic Intergenic -3206 NR_037917 3364 Hs.152983 NM_004507 ENSG00000136273 HUS1 hHUS1 HUS1 checkpoint clamp component protein-coding 204.167-15 chr2 148117300 148117546 + 1.16667 NA intron (NM_018328, intron 2 of 14) L4_B_Mam|LINE|RTE-X -95819 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 184.834 chr11 115435674 115435912 + 1.16667 NA intron (NM_001098517, intron 1 of 8) MER58B|DNA|hAT-Charlie 39037 NR_135102 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 267-5 chr17 72438925 72439416 + 1.16667 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 96359 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 249.501 chr16 79061356 79061569 + 1.16667 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 539275 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 182.834-8 chrX 56043787 56043949 + 1.16667 NA intron (NM_001324104, intron 2 of 6) L1PA11|LINE|L1 135583 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 155.5-61 chr9 1275613 1275828 + 1.16667 NA Intergenic L1MB3|LINE|L1 224233 NM_001370532 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 161.167-23 chr16 31314951 31315277 + 1.16667 NA intron (NM_001145808, intron 14 of 29) intron (NM_001145808, intron 14 of 29) -40062 NM_000887 3687 Hs.248472 NM_000887 ENSG00000140678 ITGAX CD11C|SLEB6 integrin subunit alpha X protein-coding 268.834 chr10 82481018 82481417 + 1.16667 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -248297 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 172.834-2 chr9 17735638 17735849 + 1.16667 NA intron (NM_003026, intron 1 of 8) intron (NM_003026, intron 1 of 8) 156677 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 146.167-33 chr2 64874297 64874432 + 1.16667 NA Intergenic Intergenic -10733 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 175.334-7 chr2 213741745 213741960 + 1.16667 NA intron (NR_047660, intron 9 of 14) L1MEd|LINE|L1 -16215 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 145.333-96 chr8 128053482 128053687 + 1.16667 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) 4432 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 311.167-7 chr6 122270168 122270526 + 1.16667 NA Intergenic Intergenic -129204 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 268.334 chr1 73888378 73888661 + 1.16667 NA Intergenic Intergenic 213840 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 317.001-3 chr3 142191169 142191448 + 1.16667 NA intron (NM_001039547, intron 5 of 15) AluSx4|SINE|Alu 34277 NM_001039547 256356 Hs.135904 NM_152776 ENSG00000175066 GK5 - glycerol kinase 5 protein-coding 185.5-29 chr4 23269035 23269358 + 1.16667 NA Intergenic Intergenic 555107 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 148.333-23 chr12 23727600 23727838 + 1.16667 NA intron (NM_152989, intron 9 of 17) HAL1|LINE|L1 -143133 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 226.167-15 chr2 121857268 121857501 + 1.16667 NA Intergenic Intergenic 101733 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 183.834-4 chr3 19391672 19391905 + 1.16667 NA intron (NM_144633, intron 6 of 15) intron (NM_144633, intron 6 of 15) -76857 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 205.167-14 chr14 44693025 44693359 + 1.16667 NA Intergenic Intergenic 105934 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 223.334-7 chr4 37040007 37040290 + 1.16667 NA Intergenic Intergenic 38369 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 125-37 chr18 40429595 40429879 + 1.16667 NA Intergenic Intergenic 363451 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 280.167-12 chr6 45889951 45890418 + 1.16667 NA Intergenic L1MA7|LINE|L1 47413 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 256.834-2 chr14 50953586 50953901 + 1.16667 NA Intergenic Intergenic -9260 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 243.501 chr11 30203118 30203333 + 1.16667 NA Intergenic AluSc|SINE|Alu -27789 NM_000510 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 123.667-32 chr14 49643574 49643719 + 1.16667 NA TTS (NM_001197330) TTS (NM_001197330) -8416 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 243.334-8 chrX 114403378 114403696 + 1.16667 NA Intergenic Intergenic -180541 NM_000868 3358 Hs.149037 NM_000868 ENSG00000147246 HTR2C 5-HT1C|5-HT2C|5-HTR2C|5HTR2C|HTR1C 5-hydroxytryptamine receptor 2C protein-coding 257-16 chr7 106115596 106115982 + 1.16667 NA Intergenic Intergenic -3213 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 230.167-2 chr1 235856154 235856412 + 1.16667 NA intron (NR_102436, intron 1 of 3) intron (NR_102436, intron 1 of 3) -3223 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 205.5-28 chr3 64905315 64905631 + 1.16667 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) -217473 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 270.167-4 chr14 48285935 48286173 + 1.16667 NA Intergenic Intergenic -491040 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 301.834-4 chr8 43064680 43065018 + 1.16667 NA intron (NR_033698, intron 2 of 7) AluSg|SINE|Alu 8526 NM_002027 2339 Hs.370312 NM_002027 ENSG00000168522 FNTA FPTA|PGGT1A|PTAR2 farnesyltransferase, CAAX box, alpha protein-coding 200.167-2 chr1 169954970 169955267 + 1.16667 NA intron (NM_014970, intron 18 of 19) intron (NM_014970, intron 18 of 19) -61159 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 193.167-28 chr4 54068283 54068591 + 1.16667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -3832 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 228.167-20 chr6 133489630 133490140 + 1.16667 NA intron (NM_172103, intron 12 of 18) L1MA3|LINE|L1 248386 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 508-2 chr4 31519614 31520633 + 1.16667 NA intron (NR_149121, intron 1 of 2) intron (NR_149121, intron 1 of 2) 13579 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 146.167-79 chrX 55837736 55837974 + 1.16667 NA Intergenic L1PA13|LINE|L1 -70268 NM_001324105 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 208.667-14 chr14 22146385 22146594 + 1.16667 NA Intergenic Intergenic 286264 NR_148363 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 168.167-9 chr10 104936051 104936312 + 1.16667 NA intron (NM_014978, intron 3 of 26) intron (NM_014978, intron 3 of 26) -269965 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 351.501-2 chr8 131580129 131580509 + 1.16667 NA Intergenic Intergenic -323774 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 249.834 chr3 79531286 79531816 + 1.16667 NA intron (NM_002941, intron 2 of 30) AluSz6|SINE|Alu 23664 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 255.834 chr10 97359897 97360153 + 1.16667 NA intron (NM_001145114, intron 29 of 31) intron (NM_001145114, intron 29 of 31) -25296 NM_012083 23401 Hs.140720 NM_012083 ENSG00000181274 FRAT2 FRAT-2 FRAT regulator of WNT signaling pathway 2 protein-coding 199.834-7 chr8 92197328 92197516 + 1.16667 NA Intergenic AluSx|SINE|Alu -94037 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 290.5-2 chr10 90568858 90569329 + 1.16667 NA Intergenic L1PA16|LINE|L1 -28288 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 134.333-58 chr2 78692342 78692589 + 1.16667 NA Intergenic THE1C|LTR|ERVL-MaLR 146934 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 224.334-4 chr22 43323772 43324076 + 1.16667 NA intron (NM_173050, intron 2 of 21) L4_A_Mam|LINE|RTE-X 19448 NM_173050 80274 Hs.133995 NM_152514 ENSG00000159307 SCUBE1 - signal peptide, CUB domain and EGF like domain containing 1 protein-coding 331-6 chr4 47702198 47702700 + 1.16667 NA intron (NM_006587, intron 5 of 21) intron (NM_006587, intron 5 of 21) 49780 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 148.167-49 chr3 6867809 6868057 + 1.16667 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) 6818 NM_000844 2917 Hs.606393 NM_000844 ENSG00000196277 GRM7 GLUR7|GPRC1G|MGLU7|MGLUR7|PPP1R87 glutamate metabotropic receptor 7 protein-coding 326.5-6 chr18 7157253 7157774 + 1.16667 NA Intergenic Intergenic -39716 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 115.167-30 chr12 126886541 126886646 + 1.16667 NA Intergenic MLT2C1|LTR|ERVL -11903 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 184 chr1 40270045 40270242 + 1.16667 NA intron (NM_005857, intron 5 of 9) intron (NM_005857, intron 5 of 9) 11907 NM_005857 10269 Hs.132642 NM_005857 ENSG00000084073 ZMPSTE24 FACE-1|FACE1|HGPS|PRO1|STE24|Ste24p zinc metallopeptidase STE24 protein-coding 155.667-72 chr7 17214776 17215039 + 1.16667 NA Intergenic L1MB8|LINE|L1 -83745 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 200-20 chr14 59499234 59499723 + 1.16667 NA intron (NM_001284204, intron 5 of 5) intron (NM_001284204, intron 5 of 5) 14961 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 290-5 chr22 24718538 24718984 + 1.16667 NA TTS (NR_045648) TTS (NR_045648) -45740 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 134.5-63 chr6 75002377 75002500 + 1.16667 NA Intergenic Intergenic 126344 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 141.5-6 chr1 213390779 213390995 + 1.16667 NA Intergenic Intergenic 339646 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 124.667-115 chr7 69983782 69983911 + 1.16667 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 385371 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 124.833-88 chr8 124520001 124520150 + 1.16667 NA intron (NM_001146160, intron 1 of 9) intron (NM_001146160, intron 1 of 9) -11499 NR_106903 102466200 NR_106903 ENSG00000284087 MIR6844 hsa-mir-6844 microRNA 6844 ncRNA 255.5-19 chr6 128581664 128582022 + 1.16667 NA Intergenic Intergenic -61244 NM_001291981 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 202-49 chr9 109003934 109004265 + 1.16667 NA intron (NM_003798, intron 1 of 18) MLT1F1|LTR|ERVL-MaLR 9400 NM_003798 8727 Hs.58488 NM_003798 ENSG00000119326 CTNNAL1 ACRP|CLLP|alpha-CATU catenin alpha like 1 protein-coding 250.5-26 chr9 37532191 37532797 + 1.16667 NA intron (NM_012166, intron 3 of 10) AluJb|SINE|Alu 43886 NM_012166 26267 Hs.709527 NM_012166 ENSG00000147912 FBXO10 FBX10|PRMT11 F-box protein 10 protein-coding 379.667 chr1 194671923 194672457 + 1.16667 NA Intergenic Intergenic 1367445 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 206-36 chr8 25395199 25395435 + 1.16667 NA intron (NM_024940, intron 44 of 51) MER1A|DNA|hAT-Charlie 28944 NM_001083111 2796 Hs.82963 NM_000825 ENSG00000147437 GNRH1 GNRH|GRH|LHRH|LNRH gonadotropin releasing hormone 1 protein-coding 142.5-9 chr10 51104079 51104260 + 1.16667 NA intron (NM_006258, intron 1 of 17) HAL1|LINE|L1 29682 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 158-34 chr3 130778079 130778294 + 1.16667 NA Intergenic L1ME3Cz|LINE|L1 -31357 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 241-7 chr16 13146761 13147186 + 1.16667 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 245375 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 256-15 chr6 10428625 10429166 + 1.16667 NA non-coding (NR_027793, exon 3 of 3) non-coding (NR_027793, exon 3 of 3) -5434 NR_132993 106660610 Hs.575376 NR_132993 ENSG00000229401 MIR5689HG - MIR5689 host gene ncRNA 156.5-67 chr5 31114687 31115020 + 1.16667 NA Intergenic Intergenic -78833 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 528 chr11 8896263 8897013 + 1.16667 NA intron (NM_005418, intron 1 of 22) MER47A|DNA|TcMar-Tigger 14313 NM_005418 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 198.834 chr1 220137604 220137850 + 1.16667 NA intron (NM_018060, intron 16 of 22) intron (NM_018060, intron 16 of 22) -19486 NR_029711 406969 NR_029711 ENSG00000207624 MIR194-1 MIRN194-1|mir-194-1 microRNA 194-1 ncRNA 243.334-7 chr9 128751640 128751908 + 1.16667 NA intron (NM_006336, intron 5 of 15) intron (NM_006336, intron 5 of 15) 20153 NM_006336 10444 Hs.147950 NM_006336 ENSG00000160445 ZER1 C9orf60|ZYG|ZYG11BL zyg-11 related cell cycle regulator protein-coding 164.167-8 chr10 112249064 112249238 + 1.16667 NA Intergenic Charlie23a|DNA|hAT-Charlie -34249 NM_058222 6975 Hs.345485 NM_058222 ENSG00000119913 TECTB - tectorin beta protein-coding 126.5-71 chr5 35269635 35269814 + 1.16667 NA Intergenic Intergenic -39237 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 305.001-2 chr4 65539572 65539896 + 1.16667 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 129754 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 237.167-2 chr1 209015911 209016233 + 1.16667 NA Intergenic L1MC4a|LINE|L1 43618 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 224-41 chr9 102098438 102098767 + 1.16667 NA Intergenic Intergenic -360022 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 224.334-2 chr17 31359999 31360342 + 1.16667 NA intron (NM_001042492, intron 56 of 57) intron (NM_001042492, intron 56 of 57) -31505 NM_032932 84440 Hs.406788 NM_032932 ENSG00000131242 RAB11FIP4 FIP4-Rab11|RAB11-FIP4 RAB11 family interacting protein 4 protein-coding 303.334-5 chr3 1552872 1553207 + 1.16667 NA Intergenic MIR|SINE|MIR 460015 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 245.667-28 chr4 145657321 145657712 + 1.16667 NA 3' UTR (NM_172250, exon 7 of 7) 3' UTR (NM_172250, exon 7 of 7) -22688 NM_001080531 646603 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 193-27 chr2 232470443 232470649 + 1.16667 NA Intergenic AluJb|SINE|Alu 14393 NM_001631 248 Hs.37009 NM_001631 ENSG00000163295 ALPI IAP alkaline phosphatase, intestinal protein-coding 185.667-10 chr12 98173444 98173942 + 1.16667 NA Intergenic UCON78|DNA|DNA -178245 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 179.167-47 chr8 86475273 86475813 + 1.16667 NA intron (NM_001286719, intron 7 of 8) intron (NM_001286719, intron 7 of 8) 33143 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 355.334-2 chr7 22005920 22006259 + 1.16667 NA Intergenic Intergenic -60190 NM_001127371 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 284.5-15 chr5 142513814 142514186 + 1.16667 NA Intergenic Intergenic 107334 NM_001144892 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 296-3 chr11 21255607 21255987 + 1.16667 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 586211 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 206-6 chr12 124824385 124824642 + 1.16667 NA intron (NR_160424, intron 1 of 11) L1MB5|LINE|L1 15158 NM_001367982 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 246.001 chr3 96880125 96880400 + 1.16667 NA intron (NM_001080448, intron 2 of 17) L1MA6|LINE|L1 65668 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 164.667-46 chr3 62496462 62496891 + 1.16667 NA intron (NM_003716, intron 18 of 29) MIRb|SINE|MIR -123126 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 246.167-9 chr14 64838444 64838951 + 1.16667 NA intron (NM_001355436, intron 1 of 35) L1ME1|LINE|L1 -15317 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 245.833-14 chr4 64515822 64516277 + 1.16667 NA Intergenic L1MB7|LINE|L1 -106589 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 222.667-35 chr7 84257210 84257511 + 1.16667 NA Intergenic Intergenic -62571 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 205.501 chr10 33009173 33009355 + 1.16667 NA Intergenic Intergenic -51034 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 233.333-39 chr6 62354499 62354760 + 1.16667 NA Intergenic Intergenic -68402 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 138-4 chr1 119420232 119420402 + 1.16667 NA intron (NM_000198, intron 3 of 3) intron (NM_000198, intron 3 of 3) 5167 NM_000198 3284 Hs.654399 NM_000198 ENSG00000203859 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 145.333-77 chr6 168340426 168340672 + 1.16667 NA Intergenic MIR|SINE|MIR -20772 NM_214462 168002 Hs.673059 NM_214462 ENSG00000164488 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled binding antagonist of beta catenin 2 protein-coding 293.5-5 chr14 60539022 60539305 + 1.16667 NA Intergenic Intergenic 30017 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 273.834-2 chr3 189015088 189015510 + 1.16667 NA Intergenic MSTA-int|LTR|ERVL-MaLR -67660 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 241.333-29 chr7 109860106 109860462 + 1.16667 NA Intergenic Intergenic 99929 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 152.167-58 chr5 6719854 6720184 + 1.16667 NA intron (NM_001171805, intron 1 of 12) MLT1E3|LTR|ERVL-MaLR 6587 NM_001171805 11044 Hs.481542 NM_006999 ENSG00000112941 TENT4A LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5 terminal nucleotidyltransferase 4A protein-coding 159.334-4 chr3 187540629 187540862 + 1.16667 NA Intergenic L1MC4|LINE|L1 93699 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 474.5-2 chr4 64354550 64355423 + 1.16667 NA intron (NM_001363796, intron 2 of 11) intron (NM_001363796, intron 2 of 11) 54464 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 147-88 chr8 120474825 120475118 + 1.16667 NA intron (NM_022045, intron 11 of 21) intron (NM_022045, intron 11 of 21) 29552 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 356.667 chr10 31867778 31868393 + 1.16667 NA intron (NM_001270696, intron 3 of 17) AluSx|SINE|Alu 40841 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 266.001 chr2 12090090 12090398 + 1.16667 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 83128 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 177.667-62 chr5 146770506 146770675 + 1.16667 NA intron (NM_001271899, intron 2 of 9) L1ME4a|LINE|L1 108195 NR_073526 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 338.334-4 chr20 14741720 14742205 + 1.16667 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 187556 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 121-76 chr6 39169925 39170082 + 1.16667 NA Intergenic Intergenic -54817 NM_018322 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 159.334-2 chr16 55649058 55649235 + 1.16667 NA Intergenic L1ME3D|LINE|L1 -6918 NM_001172501 6530 Hs.78036 NM_001043 ENSG00000103546 SLC6A2 NAT1|NET|NET1|SLC6A5 solute carrier family 6 member 2 protein-coding 292-3 chr15 37806464 37806914 + 1.16667 NA Intergenic THE1B|LTR|ERVL-MaLR -127918 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 362.834 chr16 52818498 52818932 + 1.16667 NA Intergenic Intergenic -211740 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 189.167-38 chr5 50764000 50764280 + 1.16667 NA intron (NM_024615, intron 7 of 25) L2b|LINE|L2 96726 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 195.667-14 chr15 81490333 81490615 + 1.16667 NA Intergenic Intergenic -116261 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 238-6 chr13 83615687 83616029 + 1.16667 NA Intergenic AluSx|SINE|Alu 266535 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 150-24 chr14 74892779 74893070 + 1.16667 NA TTS (NM_001244883) TTS (NM_001244883) 11008 NR_045209 1743 Hs.525459 NM_001933 ENSG00000119689 DLST DLTS dihydrolipoamide S-succinyltransferase protein-coding 220.333-16 chr2 177163266 177163585 + 1.16667 NA Intergenic Intergenic 48986 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 416.167 chr11 91758470 91759197 + 1.16667 NA Intergenic Intergenic -466201 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 132.834-4 chr11 91048839 91049089 + 1.16667 NA Intergenic MER50B|LTR|ERV1 -179762 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 131.667-4 chr1 79379888 79380008 + 1.16667 NA Intergenic Intergenic -373218 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 295.834-3 chr2 235376585 235376889 + 1.16667 NA Intergenic AluJr|SINE|Alu -117306 NM_014914 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 181-35 chr2 54458949 54459226 + 1.16667 NA intron (NM_003128, intron 1 of 35) intron (NM_003128, intron 1 of 35) 2760 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 163.334-6 chr5 179219249 179219457 + 1.16667 NA intron (NM_014244, intron 3 of 21) MLT1K|LTR|ERVL-MaLR 126108 NM_021599 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 158.167 chr1 33118180 33118362 + 1.16667 NA intron (NM_001350399, intron 10 of 10) intron (NM_001350399, intron 10 of 10) 36093 NR_126031 113451 Hs.101807 NM_052998 ENSG00000142920 AZIN2 ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 200.5-48 chr9 81351562 81351850 + 1.16667 NA Intergenic L1M1|LINE|L1 337829 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 154.167-37 chr20 42550682 42550814 + 1.16667 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -134735 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 113.833-6 chr1 153038350 153038483 + 1.16667 NA Intergenic Intergenic 2704 NM_006945 6703 Hs.505327 NM_006945 ENSG00000163216 SPRR2D - small proline rich protein 2D protein-coding 301.501 chr7 80750604 80751129 + 1.16667 NA intron (NM_006379, intron 16 of 17) L1MB3|LINE|L1 104213 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 172.667-13 chr10 90822168 90822433 + 1.16667 NA intron (NM_019860, intron 1 of 2) MSTA-int|LTR|ERVL-MaLR 35739 NM_000872 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 168.834-4 chr20 19294052 19294234 + 1.16667 NA intron (NM_020689, intron 2 of 16) MER2B|DNA|TcMar-Tigger -9547 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 234.834-2 chr10 60782021 60782429 + 1.16667 NA intron (NM_033379, intron 2 of 6) intron (NM_033379, intron 2 of 6) 3747 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 238.167-2 chr1 241868521 241868862 + 1.16667 NA intron (NM_001319224, intron 10 of 14) L1M4|LINE|L1 19960 NM_003686 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 184.833-26 chr5 35536319 35536567 + 1.16667 NA Intergenic L1M6|LINE|L1 -81420 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 187.167-28 chr4 122532638 122532915 + 1.16667 NA Intergenic ERVL-B4-int|LTR|ERVL -76281 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 240.167-10 chr2 52945308 52945610 + 1.16667 NA Intergenic HAL1ME|LINE|L1 -242844 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 326.001 chr11 111023917 111024548 + 1.16667 NA Intergenic Intergenic 73086 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 165.667-22 chr14 70945166 70945392 + 1.16667 NA intron (NM_014982, intron 1 of 35) MER21B|LTR|ERVL 37820 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 177.5-71 chr6 40361392 40361610 + 1.16667 NA Intergenic L1MC4|LINE|L1 -5495 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 277.501-3 chr8 128089762 128090070 + 1.16667 NA intron (NR_003367, intron 6 of 8) Charlie4a|DNA|hAT-Charlie 40764 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 179.334-7 chr5 27031002 27031181 + 1.16667 NA intron (NM_016279, intron 1 of 11) intron (NM_016279, intron 1 of 11) 7495 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 162.334-7 chr2 119309111 119309342 + 1.16667 NA intron (NM_001322332, intron 4 of 4) intron (NM_001322332, intron 4 of 4) 57516 NM_001322330 130355 Hs.99488 NM_001017927 ENSG00000186132 C2orf76 AIM29 chromosome 2 open reading frame 76 protein-coding 170-69 chr7 83443947 83444229 + 1.16667 NA intron (NM_001178129, intron 4 of 16) intron (NM_001178129, intron 4 of 16) 197343 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 150.834-5 chr7 138630216 138630421 + 1.16667 NA intron (NM_174959, intron 5 of 11) intron (NM_174959, intron 5 of 11) 33906 NM_001331192 136306 Hs.99414 NM_174959 ENSG00000157703 SVOPL - SVOP like protein-coding 261.501 chr4 61896197 61896456 + 1.16667 NA intron (NM_001371343, intron 11 of 23) intron (NM_001371343, intron 11 of 23) 265439 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 146.167-53 chr5 41457023 41457257 + 1.16667 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 53461 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 195.834 chr17 53230240 53230496 + 1.16667 NA Intergenic L2a|LINE|L2 244863 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 244.5-22 chr5 145443505 145443801 + 1.16667 NA Intergenic MIRc|SINE|MIR 391689 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 169.167-7 chr11 113325725 113326062 + 1.16667 NA intron (NM_001318533, intron 6 of 21) MER63A|DNA|hAT-Blackjack 11310 NM_017868 54970 Hs.288772 NM_017868 ENSG00000149292 TTC12 TPARM tetratricopeptide repeat domain 12 protein-coding 139.5-20 chr17 64641624 64641749 + 1.16667 NA intron (NM_022739, intron 1 of 18) intron (NM_022739, intron 1 of 18) 20621 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 249.334-8 chr6 35226857 35227155 + 1.16667 NA intron (NM_001303136, intron 1 of 21) intron (NM_001303136, intron 1 of 21) 13050 NM_152753 222663 Hs.12923 NM_152753 ENSG00000146197 SCUBE3 CEGF3 signal peptide, CUB domain and EGF like domain containing 3 protein-coding 271.334 chr1 186981291 186981545 + 1.16667 NA intron (NM_024420, intron 17 of 17) intron (NM_024420, intron 17 of 17) -111424 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 158.5-89 chr9 91664946 91665128 + 1.16667 NA Intergenic Intergenic -28692 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 182-27 chr2 143395184 143395635 + 1.16667 NA intron (NM_018460, intron 6 of 13) L2b|LINE|L2 265990 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 145.834-7 chr8 19767114 19767555 + 1.16667 NA Intergenic Intergenic -9305 NM_001354480 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 326-5 chr3 69911817 69912118 + 1.16667 NA intron (NM_198159, intron 2 of 9) L1ME3Cz|LINE|L1 -24625 NM_001184968 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 289.501 chr13 32409574 32409902 + 1.16667 NA intron (NM_001353636, intron 1 of 2) intron (NM_001353636, intron 1 of 2) 18392 NM_001353627 90634 Hs.732118 NM_052818 ENSG00000139597 N4BP2L1 CG018 NEDD4 binding protein 2 like 1 protein-coding 230.5-19 chr7 61099060 61099302 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr 2204875 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 163.667-8 chr10 53281990 53282248 + 1.16667 NA Intergenic MIRb|SINE|MIR -510419 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 226.334-4 chr2 189988469 189988988 + 1.16667 NA Intergenic MLT1J|LTR|ERVL-MaLR 74001 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 193.834-2 chr1 45800822 45801040 + 1.16667 NA Intergenic MLT1F2|LTR|ERVL-MaLR -2676 NM_001324320 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 248-10 chr20 11016212 11016571 + 1.16667 NA Intergenic Intergenic -10153 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 267.167-16 chr4 15751787 15752063 + 1.16667 NA Intergenic Intergenic -26403 NM_001775 952 Hs.479214 NM_001775 ENSG00000004468 CD38 ADPRC 1|ADPRC1 CD38 molecule protein-coding 178.667-41 chr3 98600175 98600365 + 1.16667 NA Intergenic MLT2D|LTR|ERVL -6659 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 117.167-51 chr2 212991174 212991516 + 1.16667 NA Intergenic Intergenic -65009 NR_039936 100616472 NR_039936 ENSG00000283637 MIR4776-2 mir-4776-2 microRNA 4776-2 ncRNA 353.667-4 chr8 107206686 107207255 + 1.16667 NA Intergenic Intergenic 129545 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 250-4 chr11 19891927 19892235 + 1.16667 NA intron (NM_001244963, intron 6 of 39) AluSx1|SINE|Alu -130475 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 180.834 chr1 84524783 84524948 + 1.16667 NA intron (NM_001310156, intron 4 of 13) L2a|LINE|L2 -18284 NM_005274 2787 Hs.645427 NM_005274 ENSG00000174021 GNG5 - G protein subunit gamma 5 protein-coding 231.334 chr1 115341118 115341349 + 1.16667 NA intron (NR_157569, intron 1 of 1) intron (NR_157569, intron 1 of 1) -2997 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 261.667-23 chr2 215005460 215005859 + 1.16667 NA intron (NR_103740, intron 20 of 54) intron (NR_103740, intron 20 of 54) 26427 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 351.167-5 chr12 16627936 16628390 + 1.16667 NA Intergenic Intergenic -19949 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 126.5-65 chr4 33074976 33075179 + 1.16667 NA Intergenic OldhAT1|DNA|hAT-Ac 724039 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 132.334 chr10 111346888 111347005 + 1.16667 NA Intergenic L1M5|LINE|L1 232655 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 234-8 chr12 15346684 15347222 + 1.16667 NA intron (NM_030667, intron 1 of 26) L2c|LINE|L2 24445 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 168-12 chr12 53512835 53513004 + 1.16667 NA 3' UTR (NM_001366561, exon 11 of 11) 3' UTR (NM_001366561, exon 11 of 11) -1065 NR_046221 100652999 Hs.633602 NR_046221 ENSG00000257550 LOC100652999 - uncharacterized LOC100652999 ncRNA 286.501-3 chr2 210127118 210127408 + 1.16667 NA intron (NM_001307976, intron 3 of 13) L1MB3|LINE|L1 44146 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 233.501 chr8 125177898 125178170 + 1.16667 NA intron (NR_146191, intron 5 of 8) OldhAT1|DNA|hAT-Ac 86174 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 300.167-3 chr14 31678167 31678521 + 1.16667 NA intron (NR_120408, intron 6 of 9) L1M1|LINE|L1 -36225 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 157.334-7 chr6 111799084 111799262 + 1.16667 NA intron (NM_153047, intron 2 of 13) intron (NM_153047, intron 2 of 13) -39256 NM_001370529 2534 Hs.390567 NM_002037 ENSG00000010810 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 210.5-10 chr12 14716771 14717003 + 1.16667 NA Intergenic Charlie1a|DNA|hAT-Charlie -20288 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 164-50 chr5 3733693 3733951 + 1.16667 NA Intergenic Intergenic 137990 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 144.5-74 chr5 30460291 30460497 + 1.16667 NA Intergenic Intergenic 579834 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 218.167-25 chr6 108904908 108905274 + 1.16667 NA intron (NM_001286609, intron 7 of 16) intron (NM_001286609, intron 7 of 16) 19012 NR_104137 101929716 NR_104137 ARMC2-AS1 - ARMC2 antisense RNA 1 ncRNA 193.333-14 chr12 39526062 39526358 + 1.16667 NA Intergenic THE1B|LTR|ERVL-MaLR -83090 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 430.668 chr8 5976773 5977276 + 1.16667 NA Intergenic Intergenic 429524 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 343.5-7 chr5 29405271 29405932 + 1.16667 NA Intergenic THE1C|LTR|ERVL-MaLR -9625 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 171.167-47 chr5 52189411 52189750 + 1.16667 NA Intergenic Intergenic 181549 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 393.833 chr10 99907432 99907972 + 1.16667 NA intron (NM_015221, intron 6 of 16) intron (NM_015221, intron 6 of 16) 6390 NM_001318327 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 353.667 chr1 145933232 145933597 + 1.16667 NA TTS (NM_153713) TTS (NM_153713) -5878 NM_005105 9939 Hs.591455 NM_005105 ENSG00000265241 RBM8A BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1 RNA binding motif protein 8A protein-coding 140.167-7 chr11 13495594 13495864 + 1.16667 NA intron (NM_001316352, intron 1 of 2) intron (NM_001316352, intron 1 of 2) 268 NM_000315 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 268.5-11 chr3 54085718 54086172 + 1.16667 NA Intergenic L2b|LINE|L2 -36607 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 178-49 chr6 37230654 37230943 + 1.16667 NA intron (NM_145316, intron 1 of 3) intron (NM_145316, intron 1 of 3) 26801 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 226.334-7 chr5 89085660 89085868 + 1.16667 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -181659 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 191.167-38 chr9 7726294 7726495 + 1.16667 NA Intergenic Intergenic 73384 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 304.834-2 chr2 198070023 198070475 + 1.16667 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 265656 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 151.5-31 chr18 54728988 54729184 + 1.16667 NA Intergenic L1MEf|LINE|L1 -99391 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 326.167-6 chr18 59356624 59357050 + 1.16667 NA intron (NM_005570, intron 1 of 12) MIRc|SINE|MIR 2428 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 122.167-28 chr17 66207982 66208105 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -15910 NM_001353129 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 156.5-35 chr16 52940872 52941090 + 1.16667 NA Intergenic Intergenic 111892 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 161.5-42 chr6 131417615 131417800 + 1.16667 NA Intergenic Intergenic -155519 NM_001369020 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 131-13 chr11 122944141 122944303 + 1.16667 NA intron (NM_001363089, intron 5 of 8) L1MEd|LINE|L1 37612 NM_001098169 390259 Hs.449687 NM_001098169 ENSG00000188909 BSX BSX1 brain specific homeobox protein-coding 295.833-5 chr2 189302953 189303335 + 1.16667 NA Intergenic MER44C|DNA|TcMar-Tigger -123383 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 280.167-9 chr5 18190555 18191032 + 1.16667 NA Intergenic MSTB1|LTR|ERVL-MaLR 383519 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 148.5-22 chr14 60352273 60352486 + 1.16667 NA Intergenic Intergenic 29183 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 146.5-89 chr8 106455852 106456115 + 1.16667 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 8059 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 330.334-5 chr2 39716055 39716512 + 1.16667 NA intron (NM_152390, intron 3 of 3) intron (NM_152390, intron 3 of 3) 50366 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 161-54 chr5 164919178 164919490 + 1.16667 NA Intergenic L1M8|LINE|L1 449055 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 181.5-23 chr19 29609107 29609295 + 1.16667 NA intron (NR_027368, intron 2 of 5) intron (NR_027368, intron 2 of 5) 2918 NR_027368 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 285.667-14 chrX 155448838 155449424 + 1.16667 NA Intergenic L1M2|LINE|L1 -8386 NR_036259 100422985 NR_036259 ENSG00000221190 MIR1184-2 - microRNA 1184-2 ncRNA 451-2 chr7 99797834 99798665 + 1.16667 NA Intergenic L1MB3|LINE|L1 -14065 NM_001202855 1576 Hs.728751 NM_017460 ENSG00000160868 CYP3A4 CP33|CP34|CYP3A|CYP3A3|CYPIIIA3|CYPIIIA4|HLP|NF-25|P450C3|P450PCN1 cytochrome P450 family 3 subfamily A member 4 protein-coding 166.334-6 chr6 148189032 148189253 + 1.16667 NA Intergenic Intergenic -83186 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 226.834-2 chr6 52258765 52258976 + 1.16667 NA Intergenic Intergenic -14370 NM_052872 112744 Hs.272295 NM_052872 ENSG00000112116 IL17F CANDF6|IL-17F|ML-1|ML1 interleukin 17F protein-coding 200-31 chr18 62378354 62378813 + 1.16667 NA intron (NM_003839, intron 9 of 9) intron (NM_003839, intron 9 of 9) 53273 NM_001270951 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 249.5-33 chr8 123427912 123428193 + 1.16667 NA intron (NM_018024, intron 2 of 5) intron (NM_018024, intron 2 of 5) 11278 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 158.167-36 chr3 114823723 114824055 + 1.16667 NA intron (NM_001348805, intron 4 of 10) intron (NM_001348805, intron 4 of 10) -49144 NR_126422 104413890 Hs.612732 NR_126422 ENSG00000239946 ZBTB20-AS3 - ZBTB20 antisense RNA 3 ncRNA 307.667-5 chr13 26344921 26345326 + 1.16667 NA intron (NM_001318368, intron 2 of 12) Tigger3b|DNA|TcMar-Tigger 90994 NM_001346501 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 157.334-5 chr22 22137139 22137356 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr -93313 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 258.833-7 chr14 62516478 62516949 + 1.16667 NA Intergenic Intergenic -376740 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 120.5-54 chr2 202586642 202586856 + 1.16667 NA Intergenic SATR2|Satellite|Satellite -48220 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 203.167-19 chr15 69585152 69585443 + 1.16667 NA Intergenic MLT1A|LTR|ERVL-MaLR -6903 NR_126438 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 233-11 chr15 69398198 69398524 + 1.16667 NA intron (NR_132971, intron 1 of 1) MIRb|SINE|MIR -15988 NM_001367805 9493 Hs.270845 NM_004856 ENSG00000137807 KIF23 CHO1|KNSL5|MKLP-1|MKLP1 kinesin family member 23 protein-coding 144.834 chr1 178281003 178281198 + 1.16667 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) -60351 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 149-35 chr2 39118497 39118675 + 1.16667 NA intron (NM_005633, intron 1 of 22) MER102b|DNA|hAT-Charlie 1877 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 163.167-53 chrX 79913354 79913552 + 1.16667 NA Intergenic L1MB5|LINE|L1 -101300 NM_001109879 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 131.833-24 chr17 31612068 31612285 + 1.16667 NA Intergenic L1MC4a|LINE|L1 36765 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 211.667-25 chr3 33290728 33291218 + 1.16667 NA intron (NM_012157, intron 1 of 14) AluJr|SINE|Alu 13531 NR_146131 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 283.334 chr11 32557895 32558261 + 1.16667 NA Intergenic Intergenic -25753 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 173.833-38 chr3 177441696 177441953 + 1.16667 NA promoter-TSS (NR_047568) promoter-TSS (NR_047568) -97 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 162.333-54 chr4 148164034 148164345 + 1.16667 NA intron (NM_000901, intron 4 of 8) intron (NM_000901, intron 4 of 8) 278225 NM_001166104 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 257.667-7 chr19 48252046 48252433 + 1.16667 NA intron (NM_001351783, intron 1 of 12) MER33|DNA|hAT-Charlie -2392 NM_001184903 22900 Hs.68846 NM_014959 ENSG00000105483 CARD8 CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN caspase recruitment domain family member 8 protein-coding 319.667-6 chr2 97904870 97905323 + 1.16667 NA intron (NM_015348, intron 3 of 40) L1MEc|LINE|L1 90852 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 209.667-35 chr7 27707204 27707555 + 1.16667 NA Intergenic Intergenic -31994 NM_001206901 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 152.334-4 chr8 97897493 97897688 + 1.16667 NA intron (NM_002380, intron 2 of 18) intron (NM_002380, intron 2 of 18) 28526 NM_030583 4147 Hs.189445 NM_002380 ENSG00000132561 MATN2 - matrilin 2 protein-coding 182.667-43 chr4 73641948 73642218 + 1.16667 NA Intergenic L1MA3|LINE|L1 -21452 NM_201431 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 171.334 chr1 165521282 165521682 + 1.16667 NA intron (NR_026744, intron 4 of 6) L1MCc|LINE|L1 -22759 NM_001005214 440699 Hs.664975 NM_001005214 ENSG00000162763 LRRC52 - leucine rich repeat containing 52 protein-coding 143.667-111 chr9 87112581 87112737 + 1.16667 NA Intergenic Intergenic -27434 NR_036691 494127 Hs.626316 NR_036691 LOC494127 - NFYC pseudogene pseudo 410-3 chr7 115332843 115333542 + 1.16667 NA Intergenic Intergenic -101837 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 176.667-35 chr2 67759487 67759801 + 1.16667 NA Intergenic Intergenic 65918 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 164.167-54 chr5 125159459 125159652 + 1.16667 NA intron (NR_109882, intron 3 of 5) intron (NR_109882, intron 3 of 5) 122724 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 120.667-27 chr12 47597482 47597708 + 1.16667 NA Intergenic L1MC5a|LINE|L1 108435 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 195.167-20 chr20 14329657 14329975 + 1.16667 NA intron (NM_198391, intron 1 of 2) intron (NM_198391, intron 1 of 2) 7796 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 186-7 chr10 66320154 66320386 + 1.16667 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -605766 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 169-64 chrUn_KI270333v1 2477 2697 + 1.16667 NA NA SAR|Satellite|Satellite NA NA 265.167-8 chr2 162845045 162845409 + 1.16667 NA Intergenic L1MEc|LINE|L1 -6460 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 154.334-3 chr19 39353963 39354460 + 1.16667 NA intron (NM_018028, intron 4 of 15) MIR3|SINE|MIR 11752 NM_001303614 55095 Hs.612332 NM_018028 ENSG00000179134 SAMD4B SMGB|Smaug2 sterile alpha motif domain containing 4B protein-coding 256.333-3 chr1 185123930 185124246 + 1.16667 NA intron (NM_030934, intron 12 of 14) intron (NM_030934, intron 12 of 14) 32865 NM_030934 81627 Hs.107149 NM_030934 ENSG00000121486 TRMT1L C1orf25|MST070|MSTP070|TRM1L|bG120K12.3 tRNA methyltransferase 1 like protein-coding 206.333-23 chr4 38538322 38538799 + 1.16667 NA Intergenic Intergenic -15380 NR_110951 101928776 Hs.586147 NR_110951 ENSG00000249534 LINC01258 - long intergenic non-protein coding RNA 1258 ncRNA 206.5-28 chr6 41068281 41068591 + 1.16667 NA intron (NM_001329694, intron 3 of 3) intron (NM_001329694, intron 3 of 3) 3404 NM_001329688 221443 Hs.227457 NM_145063 ENSG00000124596 OARD1 C6orf130|TARG1|dJ34B21.3 O-acyl-ADP-ribose deacylase 1 protein-coding 225.834-4 chr8 132513062 132513422 + 1.16667 NA Intergenic Intergenic -32147 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 200.667-56 chrX 57661324 57661826 + 1.16667 NA Intergenic PRIMA4-int|LTR|ERV1 18685 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 135-28 chr17 40850175 40850331 + 1.16667 NA Intergenic Intergenic 16970 NM_000223 3859 Hs.66739 NM_000223 ENSG00000187242 KRT12 K12 keratin 12 protein-coding 175-26 chr17 51486561 51486795 + 1.16667 NA Intergenic L2c|LINE|L2 51251 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 257.001 chr1 234892542 234892781 + 1.16667 NA Intergenic Intergenic 71338 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 283.334-6 chr20 59952093 59952527 + 1.16667 NA Intergenic Intergenic -6086 NR_145482 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 419.833 chr5 128575727 128576411 + 1.16667 NA Intergenic LTR103b_Mam|LTR|ERV1? -37824 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 284.834-7 chr3 192418937 192419594 + 1.16667 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -10216 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 327.001-3 chr7 30020119 30020736 + 1.16667 NA intron (NR_046478, intron 2 of 4) intron (NR_046478, intron 2 of 4) 6275 NR_046479 55033 Hs.390838 NM_017946 ENSG00000106080 FKBP14 EDSKMH|EDSKSCL2|FKBP22|IPBP12 FKBP prolyl isomerase 14 protein-coding 236.167-6 chr14 33141398 33141651 + 1.16667 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 202645 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 170.834-5 chr2 106237570 106237754 + 1.16667 NA Intergenic L1M1|LINE|L1 -43323 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 220.167-3 chr10 39306272 39306482 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr 609781 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 484.667 chr1 52917256 52918072 + 1.16667 NA intron (NM_001319958, intron 1 of 9) Tigger3b|DNA|TcMar-Tigger 4076 NM_001198961 55268 Hs.476319 NM_018281 ENSG00000121310 ECHDC2 - enoyl-CoA hydratase domain containing 2 protein-coding 244.667-31 chr9 29097261 29097499 + 1.16667 NA intron (NM_001354574, intron 1 of 5) Charlie21a|DNA|hAT-Charlie 114919 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 288.167-9 chr6 2096466 2096763 + 1.16667 NA intron (NM_001253846, intron 4 of 10) intron (NM_001253846, intron 4 of 10) 79377 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 382.667-2 chr3 189494999 189495486 + 1.16667 NA Intergenic Intergenic -101504 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 124.334 chr14 56719691 56719803 + 1.16667 NA Intergenic AluSx1|SINE|Alu 85920 NM_172337 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 302-11 chr12 1250866 1251350 + 1.16667 NA intron (NR_027946, intron 13 of 18) intron (NR_027946, intron 13 of 18) 223360 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 503.166 chr8 127832804 127833673 + 1.16667 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 37276 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 219.667-25 chr5 142128830 142129158 + 1.16667 NA intron (NM_030571, intron 1 of 7) intron (NM_030571, intron 1 of 7) 20215 NM_030571 80762 Hs.9788 NM_030571 ENSG00000131507 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 151.667-33 chr2 9722932 9723129 + 1.16667 NA Intergenic Tigger3a|DNA|TcMar-Tigger -92033 NM_006826 10971 Hs.74405 NM_006826 ENSG00000134308 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 182-41 chr5 74949929 74950151 + 1.16667 NA Intergenic L1MC5a|LINE|L1 -83074 NM_015566 26049 Hs.91662 NM_015566 ENSG00000198780 FAM169A SLAP75 family with sequence similarity 169 member A protein-coding 381.167-3 chr5 149378532 149379217 + 1.16667 NA intron (NM_001317987, intron 1 of 2) MIR3|SINE|MIR 418 NM_014443 27190 Hs.156979 NM_014443 ENSG00000127743 IL17B IL-17B|IL-20|NIRF|ZCYTO7 interleukin 17B protein-coding 331.833 chr10 90534522 90535257 + 1.16667 NA intron (NR_110657, intron 1 of 6) L1M5|LINE|L1 5916 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 176.333-38 chr20 59815797 59816041 + 1.16667 NA intron (NM_080672, intron 8 of 12) MER1A|DNA|hAT-Charlie 94709 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 171.167-23 chr2 46573165 46573415 + 1.16667 NA intron (NR_104182, intron 1 of 1) AluSz|SINE|Alu 6948 NR_104182 100506142 Hs.658541 NR_104182 ENSG00000250116 LOC100506142 - uncharacterized LOC100506142 ncRNA 192.5-58 chr8 124755188 124755395 + 1.16667 NA Intergenic MLT1L|LTR|ERVL-MaLR -26784 NM_014751 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 197-8 chr11 41014732 41015087 + 1.16667 NA intron (NM_001258419, intron 1 of 6) MIRc|SINE|MIR 444727 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 236.167-2 chr1 210578619 210579301 + 1.16667 NA intron (NM_001122834, intron 9 of 11) L1PA13|LINE|L1 249594 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 177-22 chr16 62693856 62694035 + 1.16667 NA Intergenic Intergenic -657507 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 240.334-10 chr9 128451380 128452048 + 1.16667 NA intron (NR_031672, intron 2 of 2).4 AluSq|SINE|Alu -3441 NM_153436 4957 Hs.129055 NM_002540 ENSG00000136811 ODF2 CT134|ODF2/1|ODF2/2|ODF84 outer dense fiber of sperm tails 2 protein-coding 156.667-60 chr20 4541805 4542115 + 1.16667 NA Intergenic ERVL-E-int|LTR|ERVL -144496 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 222.834-5 chr4 80893009 80893327 + 1.16667 NA intron (NM_152770, intron 4 of 5) L1M3|LINE|L1 -137540 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 146.167-38 chr3 27972848 27973087 + 1.16667 NA Intergenic L1ME3G|LINE|L1 -138831 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 213-26 chr6 144821149 144821370 + 1.16667 NA intron (NM_007124, intron 65 of 73) intron (NM_007124, intron 65 of 73) 415604 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 204.334-4 chr5 88000298 88000558 + 1.16667 NA Intergenic Intergenic 268417 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 150.5-63 chr5 35455822 35456070 + 1.16667 NA Intergenic Intergenic -161917 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 146.833-13 chr13 84267308 84267464 + 1.16667 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) 126784 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 221.334 chr16 7784036 7784308 + 1.16667 NA Intergenic Intergenic 451327 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 163.167-41 chr6 144909901 144910307 + 1.16667 NA Intergenic MER31B|LTR|ERV1 504449 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 137-37 chr15 60102862 60103098 + 1.16667 NA Intergenic Intergenic 98669 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 200-5 chr10 62404079 62404366 + 1.16667 NA intron (NM_199451, intron 3 of 7) intron (NM_199451, intron 3 of 7) -29095 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 230.667-26 chr6 100617679 100618032 + 1.16667 NA intron (NM_006828, intron 30 of 41) L2|LINE|L2 -154180 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 283.5-10 chr6 56238863 56239287 + 1.16667 NA intron (NM_001318751, intron 1 of 30) intron (NM_001318751, intron 1 of 30) 8505 NM_001318751 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 218.167-24 chr5 84367038 84367246 + 1.16667 NA intron (NM_001278642, intron 1 of 9) intron (NM_001278642, intron 1 of 9) 17725 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 357.167 chr17 57376122 57376608 + 1.16667 NA intron (NM_001322250, intron 5 of 13) MIRc|SINE|MIR 119346 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 158.334-2 chr14 57936091 57936251 + 1.16667 NA Intergenic Intergenic -70079 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 177.5-73 chr6 137629907 137630182 + 1.16667 NA Intergenic Intergenic -35602 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 204.5-22 chr22 36135882 36136089 + 1.16667 NA Intergenic Intergenic 24770 NM_014349 80833 Hs.474737 NM_014349 ENSG00000128284 APOL3 APOLIII|CG121|CG12_1|apoL-III apolipoprotein L3 protein-coding 155.667-37 chr2 30532776 30533039 + 1.16667 NA intron (NM_182551, intron 3 of 6) intron (NM_182551, intron 3 of 6) 85661 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 254-4 chr14 29508964 29509294 + 1.16667 NA Intergenic Intergenic 417967 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 179.834-10 chr4 176862959 176863155 + 1.16667 NA Intergenic L1PA13|LINE|L1 -12645 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 141.5-65 chr4 30342994 30343125 + 1.16667 NA Intergenic Intergenic -377310 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 254.333-4 chr12 54702367 54702792 + 1.16667 NA Intergenic Intergenic -54214 NM_053283 117159 Hs.350570 NM_053283 ENSG00000161634 DCD AIDD|DCD-1|DSEP|HCAP|PIF dermcidin protein-coding 166.167-35 chr4 54835356 54835588 + 1.16667 NA Intergenic L1MCa|LINE|L1 177544 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 136.834-3 chr14 53748494 53748912 + 1.16667 NA Intergenic Intergenic 199781 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 209.167-9 chr13 82836272 82836467 + 1.16667 NA Intergenic Intergenic 1046024 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 273.5-11 chr17 67479365 67479789 + 1.16667 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) -7992 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 134.167-10 chr10 19935989 19936188 + 1.16667 NA intron (NM_032812, intron 1 of 13) L1ME3A|LINE|L1 119656 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 190.167-29 chr21 18607786 18608017 + 1.16667 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 78263 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 121.5-110 chr9 26132294 26132454 + 1.16667 NA Intergenic MIRb|SINE|MIR 65699 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 140.5-9 chr10 81800642 81800774 + 1.16667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -74486 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 212.501 chr12 62693995 62694513 + 1.16667 NA intron (NM_020700, intron 6 of 9) intron (NM_020700, intron 6 of 9) 90568 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 133.834 chr10 115897173 115897599 + 1.16667 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 297403 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 192-19 chr18 63918176 63918490 + 1.16667 NA intron (NM_005024, intron 4 of 7) intron (NM_005024, intron 4 of 7) 10375 NM_005024 5273 Hs.158339 NM_005024 ENSG00000242550 SERPINB10 PI-10|PI10 serpin family B member 10 protein-coding 346.667-6 chr6 17837341 17837786 + 1.16667 NA exon (NM_022113, exon 10 of 39) exon (NM_022113, exon 10 of 39) 130520 NR_134618 105374952 Hs.718703 NR_134616 ENSG00000272269 LOC105374952 - uncharacterized LOC105374952 ncRNA 291.834-3 chr2 161871786 161872140 + 1.16667 NA intron (NM_001354451, intron 6 of 25) intron (NM_001354451, intron 6 of 25) 202252 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 159.167-62 chr7 141188890 141189050 + 1.16667 NA intron (NM_001195278, intron 1 of 3) MamRTE1|LINE|RTE-BovB 114906 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 266.667-13 chr3 56552702 56552961 + 1.16667 NA Intergenic L1MC1|LINE|L1 -4325 NM_001353151 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 194.667-14 chr11 18797128 18797375 + 1.16667 NA Intergenic Intergenic -4530 NM_001278236 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 143.667-66 chr21 17350005 17350176 + 1.16667 NA Intergenic Intergenic -88800 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 212.667-31 chr4 90274381 90274689 + 1.16667 NA intron (NM_207491, intron 1 of 7) intron (NM_207491, intron 1 of 7) 39504 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 289.5-3 chr18 38813719 38814058 + 1.16667 NA Intergenic HAL1M8|LINE|L1 808287 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 341.333-5 chr6 47694905 47695480 + 1.16667 NA 3' UTR (NM_153839, exon 11 of 11) 3' UTR (NM_153839, exon 11 of 11) -3388 NM_001347855 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 168.5-44 chr4 134228343 134228635 + 1.16667 NA Intergenic Intergenic -26700 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 274-6 chr21 32758815 32759291 + 1.16667 NA intron (NR_027873, intron 7 of 17) intron (NR_027873, intron 7 of 17) 12702 NM_016631 94104 Hs.644004 NM_013329 ENSG00000159086 PAXBP1 BM020|C21orf66|FSAP105|GCFC|GCFC1 PAX3 and PAX7 binding protein 1 protein-coding 163.834-2 chr1 197938335 197938559 + 1.16667 NA Intergenic Intergenic 21075 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 152.167-51 chr4 98007973 98008319 + 1.16667 NA intron (NM_174952, intron 5 of 10) L1PA15-16|LINE|L1 135330 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 360.167-2 chr3 36346700 36347303 + 1.16667 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat -33486 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 208.333-22 chr2 81292933 81293258 + 1.16667 NA Intergenic MER5B|DNA|hAT-Charlie 173851 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 241.834-10 chr5 96846897 96847222 + 1.16667 NA Intergenic AluSx|SINE|Alu -28880 NR_137637 64167 Hs.482910 NM_022350 ENSG00000164308 ERAP2 L-RAP|LRAP endoplasmic reticulum aminopeptidase 2 protein-coding 126.5-3 chr1 205346377 205346537 + 1.16667 NA intron (NM_001271863, intron 3 of 8) intron (NM_001271863, intron 3 of 8) 10465 NM_018203 55220 Hs.10414 NM_018203 ENSG00000162873 KLHDC8A - kelch domain containing 8A protein-coding 342.5-6 chr14 61302886 61303498 + 1.16667 NA Intergenic AluJo|SINE|Alu -18251 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 161.5-11 chr13 113177628 113177822 + 1.16667 NA 3' UTR (NM_001320656, exon 15 of 15) 3' UTR (NM_001320656, exon 15 of 15) 19071 NM_001256134 8858 Hs.1011 NM_003891 ENSG00000126231 PROZ PZ protein Z, vitamin K dependent plasma glycoprotein protein-coding 254.5-16 chr6 100782090 100782351 + 1.16667 NA intron (NM_006828, intron 8 of 41) MER112|DNA|hAT-Charlie 99109 NM_006828 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 213.667-8 chr12 95728235 95728488 + 1.16667 NA intron (NM_001329701, intron 3 of 9) L1MB7|LINE|L1 61834 NM_001329702 59277 Hs.201034 NM_021229 ENSG00000074527 NTN4 PRO3091 netrin 4 protein-coding 330.334-3 chr12 32304208 32304723 + 1.16667 NA intron (NR_148725, intron 3 of 9) intron (NR_148725, intron 3 of 9) -95093 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 129.834 chr1 220640257 220640383 + 1.16667 NA intron (NM_018650, intron 13 of 17) intron (NM_018650, intron 13 of 17) -50043 NM_024709 79762 Hs.519839 NM_024709 ENSG00000162817 C1orf115 - chromosome 1 open reading frame 115 protein-coding 119-89 chr7 17432335 17432452 + 1.16667 NA intron (NR_110015, intron 1 of 2) intron (NR_110015, intron 1 of 2) 57476 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 242.167-18 chr4 133727689 133728043 + 1.16667 NA Intergenic Intergenic 473923 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 301.667-13 chrX 91319341 91319798 + 1.16667 NA Intergenic L1ME3B|LINE|L1 -115270 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 393.834-2 chr15 58280966 58281747 + 1.16667 NA Intergenic L1ME3A|LINE|L1 142975 NM_001320635 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 254.167-17 chr7 107153364 107153632 + 1.16667 NA intron (NM_002736, intron 8 of 10) intron (NM_002736, intron 8 of 10) -15463 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 158.834-4 chr5 22241649 22241928 + 1.16667 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -27938 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 190-50 chr4 115913352 115914080 + 1.16667 NA Intergenic Intergenic -386009 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 143.667-42 chr14 80797422 80797647 + 1.16667 NA intron (NM_152446, intron 13 of 24) intron (NM_152446, intron 13 of 24) 144204 NR_157142 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 219.5-31 chr4 139687941 139688430 + 1.16667 NA intron (NM_001204368, intron 2 of 3) Plat_L3|LINE|CR1 22366 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 129.833-71 chr8 40077860 40078058 + 1.16667 NA Intergenic L1MEd|LINE|L1 -75523 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 520.667-2 chr5 102401334 102402023 + 1.16667 NA intron (NM_173488, intron 9 of 13) LTR33|LTR|ERVL 97323 NM_001289002 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 201.167-32 chr7 146987336 146987603 + 1.16667 NA intron (NM_014141, intron 2 of 22) intron (NM_014141, intron 2 of 22) 110140 NR_110829 101928700 Hs.571218 NR_110829 ENSG00000236795 LOC101928700 - uncharacterized LOC101928700 ncRNA 297.001-3 chr2 142570714 142571039 + 1.16667 NA Intergenic Intergenic -306788 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 164-58 chr5 134392029 134392285 + 1.16667 NA TTS (NM_003337) TTS (NM_003337) 19724 NM_080656 91368 Hs.156506 NM_080656 ENSG00000237190 CDKN2AIPNL C2AIL CDKN2A interacting protein N-terminal like protein-coding 242.5-24 chr8 138532677 138532928 + 1.16667 NA Intergenic AluSz|SINE|Alu -35072 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 245-5 chr11 101332421 101332693 + 1.16667 NA Intergenic L1PA15|LINE|L1 187348 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 196.834 chr11 25826509 25826707 + 1.16667 NA Intergenic Intergenic -362515 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 169.5-37 chr20 51608596 51608746 + 1.16667 NA intron (NM_006045, intron 24 of 27) intron (NM_006045, intron 24 of 27) -45832 NM_001258294 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 323.5-3 chr20 52703399 52703785 + 1.16667 NA Intergenic MER113A|DNA|hAT-Charlie 82754 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 261.334-3 chr15 34894591 34894957 + 1.16667 NA intron (NM_014691, intron 22 of 34) L1MEf|LINE|L1 74968 NM_014691 9716 Hs.510958 NM_014691 ENSG00000021776 AQR IBP160|fSAP164 aquarius intron-binding spliceosomal factor protein-coding 167.5-59 chr7 11129654 11129948 + 1.16667 NA intron (NR_033436, intron 16 of 16) L2c|LINE|L2 155929 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 279.334 chr12 60375562 60375883 + 1.16667 NA Intergenic L1PA10|LINE|L1 686352 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 321.5-3 chr17 61742964 61743465 + 1.16667 NA intron (NM_032043, intron 15 of 19) intron (NM_032043, intron 15 of 19) 120345 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 142-74 chr5 52639376 52639531 + 1.16667 NA Intergenic Intergenic -148463 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 225-43 chrX 155215179 155215564 + 1.16667 NA promoter-TSS (NM_001303543) promoter-TSS (NM_001303543) -902 NM_001303543 7411 Hs.436803 NM_003372 ENSG00000155959 VBP1 HIBBJ46|PFD3|PFDN3|VBP-1 VHL binding protein 1 protein-coding 249.667-17 chr2 14124959 14125322 + 1.16667 NA Intergenic Intergenic 275818 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 398.667-3 chr6 123889931 123890449 + 1.16667 NA intron (NM_001040214, intron 1 of 6) MLT1L|LTR|ERVL-MaLR 86325 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 257.334-6 chr3 132648257 132648590 + 1.16667 NA intron (NM_032169, intron 1 of 19) LTR87|LTR|ERVL? -6023 NM_198329 79876 Hs.170737 NM_024818 ENSG00000081307 UBA5 EIEE44|SCAR24|THIFP1|UBE1DC1 ubiquitin like modifier activating enzyme 5 protein-coding 269.167-10 chr7 30399450 30399869 + 1.16667 NA intron (NR_108081, intron 1 of 2) L1MD2|LINE|L1 8774 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 119.5-49 chr2 129454469 129454789 + 1.16667 NA Intergenic L1MD2|LINE|L1 -180738 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 249.334-6 chr19 51256617 51256984 + 1.16667 NA promoter-TSS (NM_173635) promoter-TSS (NM_173635) -910 NM_173635 284369 Hs.381087 NM_173635 ENSG00000179213 SIGLECL1 C19orf75|SIGLEC23P|SIGLECP7 SIGLEC family like 1 protein-coding 209.167-30 chr5 121205749 121205956 + 1.16667 NA Intergenic L1MCc|LINE|L1 -116698 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 319.834-2 chr8 135516924 135517535 + 1.16667 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 59773 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 371.667-2 chr22 28157369 28157943 + 1.16667 NA intron (NM_001145418, intron 6 of 22) L1MA2|LINE|L1 -237044 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 329.5-14 chr7 29029597 29030056 + 1.16667 NA intron (NM_001371256, intron 16 of 16) L1MA4|LINE|L1 49859 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 129.5-42 chr2 52762777 52762936 + 1.16667 NA Intergenic ERVL-E-int|LTR|ERVL -60241 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 116.333-104 chr9 99335753 99335941 + 1.16667 NA Intergenic MER53|DNA|hAT 39410 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 125.834-4 chr5 76086542 76086710 + 1.16667 NA intron (NM_014979, intron 1 of 12) intron (NM_014979, intron 1 of 12) 3243 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 306.167-2 chr5 96265740 96266094 + 1.16667 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 166242 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 178-32 chr3 88249920 88250153 + 1.16667 NA Intergenic Intergenic -88420 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 216.833-7 chr12 29466679 29467013 + 1.16667 NA intron (NM_001353179, intron 16 of 25) Charlie11|DNA|hAT-Charlie 32847 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 354.333-3 chr9 13690322 13690864 + 1.16667 NA Intergenic Intergenic -237378 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 193.001-2 chr3 160301966 160302433 + 1.16667 NA intron (NM_001190242, intron 10 of 18) intron (NM_001190242, intron 10 of 18) 76563 NM_001168214 401097 Hs.729755 NM_001168214 ENSG00000180044 C3orf80 - chromosome 3 open reading frame 80 protein-coding 185.333-53 chr6 27318314 27318517 + 1.16667 NA Intergenic L1ME3B|LINE|L1 -6183 NM_033482 94026 Hs.729955 NM_033482 ENSG00000158553 POM121L2 POM121-L|POM121L POM121 transmembrane nucleoporin like 2 protein-coding 151.833-10 chr11 17992223 17992469 + 1.16667 NA intron (NR_104040, intron 7 of 11) intron (NR_104040, intron 7 of 11) 20701 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 159.667-66 chr4 83300342 83300555 + 1.16667 NA intron (NM_001098540, intron 11 of 11) intron (NM_001098540, intron 11 of 11) -15314 NM_015697 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 279.834-2 chr1 118745641 118746211 + 1.16667 NA Intergenic L4_A_Mam|LINE|RTE-X 242417 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 272.334 chr14 48248793 48249122 + 1.16667 NA Intergenic Intergenic -453943 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 263.334-4 chr2 147587539 147587788 + 1.16667 NA Intergenic Intergenic -256854 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 201.667-12 chr13 110901658 110901894 + 1.16667 NA intron (NR_104586, intron 3 of 4) AluJr4|SINE|Alu 13293 NM_001286721 55608 Hs.525163 NM_017664 ENSG00000088448 ANKRD10 - ankyrin repeat domain 10 protein-coding 315.333-2 chr1 222425104 222425629 + 1.16667 NA Intergenic Intergenic 122738 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 126.167-99 chrX 149333543 149333719 + 1.16667 NA Intergenic Intergenic 171675 NM_000202 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 147.334-3 chr13 82696667 82696820 + 1.16667 NA Intergenic Intergenic 1185650 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 144.167-26 chr16 19893565 19893733 + 1.16667 NA Intergenic Charlie1b|DNA|hAT-Charlie -8015 NM_001304771 51704 Hs.148685 NM_016235 ENSG00000167191 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor class C group 5 member B protein-coding 428.168 chr5 126959100 126959552 + 1.16667 NA intron (NM_178450, intron 1 of 4) L1MC3|LINE|L1 71232 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 298.5-7 chr16 5180609 5181149 + 1.16667 NA Intergenic MER4A1|LTR|ERV1 -83059 NM_201598 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 161.167-48 chr6 40730229 40730629 + 1.16667 NA Intergenic Intergenic -143065 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 148.5-53 chr3 192476313 192476477 + 1.16667 NA intron (NM_004113, intron 2 of 5) MIRb|SINE|MIR -38627 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 231.667-19 chr2 61305631 61305965 + 1.16667 NA intron (NM_014709, intron 27 of 79) intron (NM_014709, intron 27 of 79) 111579 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 192.667-33 chr21 28484692 28484887 + 1.16667 NA Intergenic AluY|SINE|Alu -54529 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 274.501-2 chr9 102069678 102069960 + 1.16667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -331239 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 205.834-6 chr8 108440540 108440976 + 1.16667 NA Intergenic Intergenic -2825 NM_001329493 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 195.333-21 chr2 35751763 35752161 + 1.16667 NA Intergenic L1MB8|LINE|L1 280557 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 210.501-4 chr3 184537934 184538272 + 1.16667 NA Intergenic MIR|SINE|MIR 18815 NR_046593 100874079 Hs.574899 NR_046593 ENSG00000230215 LINC01840 EIF2B5-AS1 long intergenic non-protein coding RNA 1840 ncRNA 201.667-16 chr15 88946260 88946525 + 1.16667 NA Intergenic MER39B|LTR|ERV1 -33013 NM_005928 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 273.667-3 chr10 104728578 104728963 + 1.16667 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -62554 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 289.167-2 chr1 68267891 68268224 + 1.16667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -35511 NM_001002292 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 136.333-83 chr6 68143998 68144208 + 1.16667 NA Intergenic L1M1|LINE|L1 88752 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 190-17 chr15 69075358 69075609 + 1.16667 NA Intergenic Intergenic -5367 NR_026949 283673 Hs.177927 NM_173610 ENSG00000212766 EWSAT1 LINC00277|NCRNA00277|TMEM84 Ewing sarcoma associated transcript 1 ncRNA 241.167-14 chr8 99246971 99247255 + 1.16667 NA intron (NM_017890, intron 17 of 61) intron (NM_017890, intron 17 of 61) 233847 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 136.167-11 chr10 19666261 19666467 + 1.16667 NA intron (NM_001142308, intron 36 of 39) L2|LINE|L2 62186 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 246.334-2 chr2 44993768 44994289 + 1.16667 NA Intergenic MIR3|SINE|MIR 15424 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 223-14 chr2 124818810 124819046 + 1.16667 NA intron (NM_130773, intron 19 of 23) L2a|LINE|L2 793641 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 383.667-3 chr18 49785763 49786409 + 1.16667 NA intron (NM_006111, intron 8 of 9) intron (NM_006111, intron 8 of 9) 27447 NM_006111 10449 Hs.200136 NM_006111 ENSG00000167315 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 340.167-6 chr3 97622120 97622623 + 1.16667 NA intron (NM_001080448, intron 13 of 17) L1MB3|LINE|L1 -142150 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 272.667-5 chr2 69657736 69658337 + 1.16667 NA intron (NM_001320698, intron 2 of 14) Charlie2a|DNA|hAT-Charlie 14228 NM_001320698 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 308.334 chr10 112493097 112493503 + 1.16667 NA intron (NM_001365712, intron 3 of 8) L1M4|LINE|L1 -45697 NM_001351082 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 315.667-4 chr15 54736828 54737368 + 1.16667 NA Intergenic L2a|LINE|L2 -319649 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 183.667-77 chr8 29169301 29169504 + 1.16667 NA intron (NM_015254, intron 10 of 39) intron (NM_015254, intron 10 of 39) 93668 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 114.333-51 chr17 40762267 40762459 + 1.16667 NA Intergenic L1MA8|LINE|L1 -7032 NM_181534 147183 Hs.55412 NM_181534 ENSG00000204897 KRT25 ARWH3|KRT24IRS1|KRT25A keratin 25 protein-coding 359.5-2 chr18 1823711 1824235 + 1.16667 NA Intergenic Intergenic -464344 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 157.833-28 chr16 60638605 60638826 + 1.16667 NA Intergenic Intergenic -278922 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 312.667-6 chr3 142347947 142348411 + 1.16667 NA intron (NM_019001, intron 32 of 41) L1MC5|LINE|L1 99858 NM_019001 54464 Hs.435103 NM_019001 ENSG00000114127 XRN1 SEP1 5'-3' exoribonuclease 1 protein-coding 114.333-9 chr1 170399171 170399355 + 1.16667 NA Intergenic Intergenic -115055 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 355.834 chr16 6433903 6434731 + 1.16667 NA intron (NM_018723, intron 2 of 15) MLT1D|LTR|ERVL-MaLR -339492 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 123.833-77 chr9 91327842 91328040 + 1.16667 NA intron (NM_001698, intron 3 of 9) LTR27D|LTR|ERV1 33983 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 244.5-2 chr10 68940718 68941088 + 1.16667 NA intron (NM_024045, intron 12 of 14) L3|LINE|CR1 -15267 NM_004728 9188 Hs.223141 NM_004728 ENSG00000165732 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DExD-box helicase 21 protein-coding 568.5 chr5 43478502 43479528 + 1.16667 NA intron (NM_022483, intron 1 of 2) L1ME4a|LINE|L1 4850 NM_022483 64417 Hs.732093 NM_022483 ENSG00000151881 TMEM267 C5orf28 transmembrane protein 267 protein-coding 232.834-6 chr7 22577686 22578086 + 1.16667 NA Intergenic Intergenic 14549 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 197.667-7 chr1 224966451 224966989 + 1.16667 NA intron (NM_001349912, intron 4 of 5) AluJo|SINE|Alu 37045 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 371.167-6 chr6 36071436 36071832 + 1.16667 NA intron (NM_139012, intron 3 of 11) intron (NM_139012, intron 3 of 11) 43826 NM_139013 1432 Hs.485233 NM_001315 ENSG00000112062 MAPK14 CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA mitogen-activated protein kinase 14 protein-coding 313.5-9 chr6 24899773 24900105 + 1.16667 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) 10795 NM_001346032 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 239.834-2 chr2 105646302 105646636 + 1.16667 NA Intergenic Intergenic -35910 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 305.5-7 chr3 174976100 174976528 + 1.16667 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 116980 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 217.833-9 chr15 86002558 86002900 + 1.16667 NA Intergenic Intergenic -76891 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 274.167-6 chr6 126397998 126398429 + 1.16667 NA intron (NR_104462, intron 2 of 3) L2a|LINE|L2 58098 NR_104462 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 167.667-74 chr5 104487891 104488083 + 1.16667 NA Intergenic MER45B|DNA|hAT-Tip100 -611487 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 227.667-25 chr5 106549499 106549705 + 1.16667 NA Intergenic Intergenic 461412 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 214.5-25 chr4 30569618 30569943 + 1.16667 NA Intergenic Intergenic -150589 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 152.834-4 chr7 52470558 52470715 + 1.16667 NA Intergenic THE1B|LTR|ERVL-MaLR -564997 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 236.334-6 chr2 84419103 84419340 + 1.16667 NA Intergenic L1ME2|LINE|L1 40059 NM_003849 8802 Hs.270428 NM_003849 ENSG00000163541 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase alpha subunit protein-coding 315.167 chr1 185319848 185320251 + 1.16667 NA Intergenic Tigger7|DNA|TcMar-Tigger -2806 NM_006469 10625 Hs.497183 NM_006469 ENSG00000116679 IVNS1ABP ARA3|FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 394.667-4 chr5 5217368 5217797 + 1.16667 NA intron (NM_139056, intron 10 of 22) intron (NM_139056, intron 10 of 22) 77252 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 314.167-8 chr7 124787594 124787993 + 1.16667 NA intron (NM_001024603, intron 2 of 3) intron (NM_001024603, intron 2 of 3) 3017 NM_001024603 154872 Hs.444163 NM_001024603 ENSG00000275356 C7orf77 - chromosome 7 open reading frame 77 protein-coding 237.5-3 chr10 58620363 58620770 + 1.16667 NA intron (NM_001080512, intron 1 of 20) intron (NM_001080512, intron 1 of 20) -94449 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 140.167-68 chr7 81196459 81196697 + 1.16667 NA Intergenic Intergenic -274189 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 162.334-4 chr17 70578721 70578874 + 1.16667 NA Intergenic Intergenic 409262 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 223.167-10 chr7 51930270 51930624 + 1.16667 NA Intergenic Intergenic -537191 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 263.834-4 chr18 7877344 7877586 + 1.16667 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 310149 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 234.834-6 chr2 16897717 16898000 + 1.16667 NA Intergenic AluSx|SINE|Alu -232024 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 155.667-53 chr4 47766584 47766778 + 1.16667 NA intron (NM_001278585, intron 2 of 19) AluSx1|SINE|Alu -64664 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 327.667-3 chr16 35357976 35358358 + 1.16667 NA Intergenic Intergenic -5249 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 229.334-4 chr9 78301458 78301721 + 1.16667 NA intron (NM_021154, intron 2 of 7) intron (NM_021154, intron 2 of 7) 4464 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 158.5-86 chr8 124040821 124041033 + 1.16667 NA promoter-TSS (NR_040044) promoter-TSS (NR_040044) -145 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 165.834-3 chr17 32203632 32203798 + 1.16667 NA intron (NM_001033566, intron 15 of 19) intron (NM_001033566, intron 15 of 19) -52144 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo 160.5-21 chr18 9218944 9219197 + 1.16667 NA intron (NM_001204056, intron 6 of 11) intron (NM_001204056, intron 6 of 11) 81507 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 184.833-21 chr3 37358695 37359021 + 1.16667 NA intron (NM_001172713, intron 22 of 22) intron (NM_001172713, intron 22 of 22) -27411 NM_178344 339883 Hs.475945 NM_178339 ENSG00000198590 C3orf35 APRG1 chromosome 3 open reading frame 35 protein-coding 251.667-15 chr4 134693091 134693480 + 1.16667 NA Intergenic Intergenic 269417 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 147.5-60 chr4 13111822 13111948 + 1.16667 NA Intergenic L1PB4|LINE|L1 372455 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 255.333-18 chr4 67522366 67522803 + 1.16667 NA intron (NR_155754, intron 5 of 18) MLT1G3|LTR|ERVL-MaLR 22919 NM_001362481 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 277.334-2 chr22 43387816 43388166 + 1.16667 NA Intergenic MIRb|SINE|MIR -12340 NR_146918 105373054 NR_146918 ENSG00000236117 LINC01639 - long intergenic non-protein coding RNA 1639 ncRNA 345.167-4 chr20 14864355 14864964 + 1.16667 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 64859 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 169.5-15 chr12 22527846 22528118 + 1.16667 NA intron (NM_001286176, intron 3 of 26) intron (NM_001286176, intron 3 of 26) 16215 NM_001286174 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 179.167-35 chr4 156461547 156461737 + 1.16667 NA Intergenic L1M2|LINE|L1 -507776 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 189.167-35 chr4 150308381 150308677 + 1.16667 NA intron (NM_001367550, intron 52 of 56) Tigger3b|DNA|TcMar-Tigger 230084 NM_001040261 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 113.5-37 chr14 85893928 85894029 + 1.16667 NA Intergenic Intergenic -40700 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 130.5-80 chr9 71625804 71625973 + 1.16667 NA Intergenic Intergenic 142625 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 119.667-73 chr4 107785329 107785516 + 1.16667 NA Intergenic Intergenic -39143 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 337.167-2 chr16 76367038 76367369 + 1.16667 NA intron (NR_136213, intron 3 of 23) intron (NR_136213, intron 3 of 23) 57351 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 153.167-48 chr6 54702725 54702957 + 1.16667 NA Intergenic Intergenic -143930 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 167-4 chr1 203717250 203717494 + 1.16667 NA intron (NM_001001396, intron 15 of 21) L1MC5|LINE|L1 -12209 NR_003019 677843 Hs.676135 NR_003019 ENSG00000221643 SNORA77 ACA63|SNORA77A small nucleolar RNA, H/ACA box 77 snoRNA 135.333-57 chr4 72665713 72665886 + 1.16667 NA Intergenic Intergenic -96578 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 307.167-2 chr4 88237077 88237525 + 1.16667 NA Intergenic L1MA2|LINE|L1 -5675 NM_001348985 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 167.834-5 chr9 85176877 85177036 + 1.16667 NA Intergenic Intergenic 471055 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 203.167-14 chr13 58161935 58162221 + 1.16667 NA Intergenic L1MC3|LINE|L1 -3749 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 300.5-12 chr5 23567956 23568372 + 1.16667 NA Intergenic L2a|LINE|L2 60509 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 127-19 chr12 9905835 9905995 + 1.16667 NA intron (NM_207375, intron 4 of 4) HERVI-int|LTR|ERV1 24426 NM_001190765 100431172 Hs.725113 NM_001190765 ENSG00000256797 KLRF2 NKp65 killer cell lectin like receptor F2 protein-coding 166.667-58 chr7 108117139 108117391 + 1.16667 NA intron (NM_001318048, intron 2 of 17) intron (NM_001318048, intron 2 of 17) 13096 NM_007356 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 247.5-19 chr22 36955118 36955522 + 1.16667 NA Intergenic L1MEc|LINE|L1 -9928 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 392.501 chr10 70625400 70625844 + 1.16667 NA Intergenic AluJb|SINE|Alu -22834 NM_005041 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 149.834-3 chr12 11733002 11733256 + 1.16667 NA intron (NM_001987, intron 1 of 7) AluY|SINE|Alu 83275 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 209.167-11 chr15 27478454 27478946 + 1.16667 NA intron (NM_001270873, intron 5 of 5) L1MB7|LINE|L1 -317381 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 275.667-17 chr3 47028775 47029042 + 1.16667 NA intron (NR_146158, intron 19 of 21) intron (NR_146158, intron 19 of 21) 17366 NR_024046 100129354 Hs.201522 NR_024046 NRADDP - neurotrophin receptor associated death domain, pseudogene pseudo 134.5-59 chr4 114870759 114870927 + 1.16667 NA exon (NM_022569, exon 7 of 14) exon (NM_022569, exon 7 of 14) 214084 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 244-8 chr18 8767902 8768294 + 1.16667 NA intron (NM_015210, intron 4 of 16) L1ME2z|LINE|L1 50717 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 327.667-10 chr4 30765579 30765872 + 1.16667 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 45356 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 176.334-3 chr13 57096472 57096656 + 1.16667 NA Intergenic Intergenic -44354 NM_001130404 729233 Hs.723090 NM_001130404 ENSG00000204918 PRR20B PRR20|PRR20A|PRR20C|PRR20D|PRR20E proline rich 20B protein-coding 290.667-7 chr4 60318378 60318650 + 1.16667 NA Intergenic L1PA8|LINE|L1 -604105 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 199.334-7 chr3 165325733 165325934 + 1.16667 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 118873 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 160-68 chr8 49441477 49441951 + 1.16667 NA Intergenic LOR1-int|LTR|ERV1 70466 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 151.667-70 chr5 152781927 152782116 + 1.16667 NA intron (NR_109877, intron 3 of 4) intron (NR_109877, intron 3 of 4) 190328 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 232.167-28 chr9 12496550 12497161 + 1.16667 NA Intergenic L1ME1|LINE|L1 -196530 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 119.833-50 chr20 11620492 11620693 + 1.16667 NA Intergenic Intergenic 250123 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 253.167-4 chr2 53157376 53157905 + 1.16667 NA Intergenic Intergenic -455025 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 296.167-9 chr7 15131795 15132165 + 1.16667 NA Intergenic LTR33|LTR|ERVL -157122 NM_001350722 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 245.667-33 chr7 99197464 99197755 + 1.16667 NA intron (NM_001145715, intron 2 of 9) L1MB7|LINE|L1 9880 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 IPOA8 karyopherin subunit alpha 7 protein-coding 293.5-14 chr9 70943043 70943494 + 1.16667 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -74216 NM_024971 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 316.834-5 chr8 139296997 139297434 + 1.16667 NA Intergenic LTR75|LTR|ERVL -383174 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 181.833-14 chr14 73641894 73642188 + 1.16667 NA Intergenic Intergenic -2945 NM_031427 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 202-4 chr11 75126290 75126598 + 1.16667 NA Intergenic Intergenic -24663 NM_001145212 11309 Hs.7884 NM_007256 ENSG00000137491 SLCO2B1 OATP-B|OATP2B1|OATPB|SLC21A9 solute carrier organic anion transporter family member 2B1 protein-coding 267.5-2 chr10 98744569 98745287 + 1.16667 NA intron (NM_021828, intron 3 of 11) AluY|SINE|Alu 179640 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 338.667-2 chr19 17920176 17920568 + 1.16667 NA Intergenic AluSx|SINE|Alu -12643 NM_001136203 115098 Hs.100043 NM_138442 ENSG00000007080 CCDC124 - coiled-coil domain containing 124 protein-coding 214.5-21 chr2 129259851 129260111 + 1.16667 NA intron (NR_122042, intron 1 of 3) L1ME4a|LINE|L1 13910 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 200.167-9 chr10 91045372 91045599 + 1.16667 NA promoter-TSS (NR_047467) promoter-TSS (NR_047467) -323 NR_047467 100874184 Hs.512240 NR_047467 LINC00502 - long intergenic non-protein coding RNA 502 ncRNA 162.334-9 chr8 84248139 84248296 + 1.16667 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 63551 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 253.167-7 chr21 15894387 15894882 + 1.16667 NA Intergenic Intergenic 164652 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 168.334 chr16 10058700 10058873 + 1.16667 NA intron (NM_001134408, intron 2 of 13) L2a|LINE|L2 123281 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 199.167-15 chr17 7876315 7876655 + 1.16667 NA intron (NM_001330111, intron 2 of 4) intron (NM_001330111, intron 2 of 4) -8311 NM_001005271 1107 Hs.25601 NM_005852 ENSG00000170004 CHD3 Mi-2a|Mi2-ALPHA|SNIBCPS|ZFH chromodomain helicase DNA binding protein 3 protein-coding 189.333-22 chr2 68983393 68983649 + 1.16667 NA Intergenic L1M5|LINE|L1 8948 NM_019617 56287 Hs.69319 NM_019617 ENSG00000169605 GKN1 AMP18|BRICD1|CA11|FOV|foveolin gastrokine 1 protein-coding 139.667-83 chr6 141382027 141382186 + 1.16667 NA Intergenic Intergenic 698292 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 130.5-62 chr4 128597198 128597321 + 1.16667 NA Intergenic Intergenic 169243 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 201.167-27 chr5 133429468 133429782 + 1.16667 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -1919 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 280.667-3 chr11 12700713 12701031 + 1.16667 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 26451 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 190.5-42 chr5 96398967 96399169 + 1.16667 NA intron (NM_001177875, intron 10 of 13) intron (NM_001177875, intron 10 of 13) 33091 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 282.167-4 chr12 13313731 13314009 + 1.16667 NA Intergenic Intergenic 62875 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 185-55 chr8 134247102 134247308 + 1.16667 NA Intergenic L1MA3|LINE|L1 -350866 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 164-13 chr12 74460788 74460939 + 1.16667 NA Intergenic Intergenic -76972 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 206.333-15 chr2 66454429 66454783 + 1.16667 NA intron (NM_002398, intron 6 of 12) intron (NM_002398, intron 6 of 12) -14276 NR_046625 100873998 Hs.734698 NR_046625 ENSG00000230749 MEIS1-AS2 MEIS1-AS1 MEIS1 antisense RNA 2 ncRNA 118.333-62 chr2 190875173 190875350 + 1 NA Intergenic Intergenic -5560 NM_014905 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 141.167-65 chr5 168917082 168917565 + 1 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) -95904 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 121.5-11 chr1 222120800 222121002 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -142381 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 142.667-51 chr2 141105527 141105747 + 1 NA intron (NM_018557, intron 7 of 90) intron (NM_018557, intron 7 of 90) -518952 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 293.667-13 chr7 29863679 29864206 + 1 NA intron (NM_001080529, intron 2 of 8) L1MD|LINE|L1 57388 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 213.833-5 chr10 48304221 48304629 + 1 NA Intergenic L2b|LINE|L2 -2214 NM_001278547 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 141.333-85 chr6 104518168 104518628 + 1 NA Intergenic AluJb|SINE|Alu 341148 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 240.833-7 chr13 58307501 58308025 + 1 NA Intergenic Intergenic -74646 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 119.333-102 chr7 81887580 81887745 + 1 NA Intergenic Intergenic -117615 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 225.5-5 chr10 54653004 54653329 + 1 NA intron (NR_134503, intron 4 of 5) MIR|SINE|MIR -45209 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 250.333-2 chr1 163859818 163860253 + 1 NA Intergenic Intergenic -436844 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 150.833-50 chr8 35469521 35469806 + 1 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -74729 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 190.333-48 chr5 107704008 107704311 + 1 NA Intergenic L1ME3Cz|LINE|L1 -33222 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 186.167-28 chr3 179724755 179725057 + 1 NA intron (NM_003940, intron 8 of 20) intron (NM_003940, intron 8 of 20) 71866 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 protein-coding 188.167-46 chr9 5628075 5628414 + 1 NA promoter-TSS (NM_020829) promoter-TSS (NM_020829) -863 NM_001135920 57589 Hs.211520 NM_020829 ENSG00000107036 RIC1 CIP150|KIAA1432|bA207C16.1 RIC1 homolog, RAB6A GEF complex partner 1 protein-coding 205.667-18 chr14 41197380 41197711 + 1 NA Intergenic L1MA3|LINE|L1 242834 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 265.167-14 chr8 60791667 60792012 + 1 NA intron (NM_017780, intron 3 of 37) intron (NM_017780, intron 3 of 37) 50580 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 189.833-2 chr1 192784209 192784446 + 1 NA Intergenic Intergenic -24712 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G protein signaling 2 protein-coding 155.333-66 chr3 100385538 100385761 + 1 NA intron (NM_014820, intron 3 of 11) intron (NM_014820, intron 3 of 11) 15440 NM_014820 9868 Hs.227253 NM_014820 ENSG00000154174 TOMM70 TOMM70A|Tom70 translocase of outer mitochondrial membrane 70 protein-coding 149.833-59 chr8 111333889 111334268 + 1 NA Intergenic Intergenic -42561 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 133.333-51 chr2 38352240 38352402 + 1 NA intron (NM_001330462, intron 1 of 13) L1MEf|LINE|L1 24209 NM_001330459 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 163.333-3 chr1 71292639 71292894 + 1 NA Intergenic MER58B|DNA|hAT-Charlie 211442 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 114.5-57 chr20 4940487 4940624 + 1 NA intron (NM_005116, intron 2 of 16) intron (NM_005116, intron 2 of 16) 60955 NM_005116 9962 Hs.516866 NM_005116 ENSG00000089057 SLC23A2 NBTL1|SLC23A1|SVCT2|YSPL2 solute carrier family 23 member 2 protein-coding 218.5-7 chr11 90754689 90754993 + 1 NA intron (NR_104190, intron 3 of 6) MIRb|SINE|MIR 114361 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 257.667-4 chr10 58938064 58938465 + 1 NA Intergenic Intergenic -61254 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 167.667-26 chr14 67975971 67976340 + 1 NA intron (NM_133509, intron 7 of 10) AluJo|SINE|Alu 152563 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 182.667-6 chr10 116155336 116155647 + 1 NA intron (NM_145793, intron 3 of 8) intron (NM_145793, intron 3 of 8) 39298 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 327.667-8 chr20 34017747 34018291 + 1 NA intron (NM_007367, intron 1 of 8) L2c|LINE|L2 -23652 NR_109886 101926888 Hs.405849 NR_109885 ENSG00000285230 RALY-AS1 - RALY antisense RNA 1 ncRNA 254.667-4 chr11 20499964 20500301 + 1 NA intron (NM_005788, intron 15 of 15) L1MD2|LINE|L1 -99268 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 288.5 chr10 18606077 18606737 + 1 NA intron (NM_182543, intron 6 of 10) L1MD3|LINE|L1 45180 NM_001351115 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase 6 protein-coding 329.333-9 chr8 89311087 89311567 + 1 NA Intergenic Intergenic 446384 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 121.667-58 chr21 29817231 29817427 + 1 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 69154 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 291.167-4 chr4 141122534 141122997 + 1 NA intron (NM_020724, intron 1 of 6) intron (NM_020724, intron 1 of 6) 10704 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 192.167-36 chr5 147859285 147859582 + 1 NA Intergenic MIRc|SINE|MIR -19278 NM_054023 117156 Hs.483765 NM_054023 ENSG00000164265 SCGB3A2 LU103|PNSP1|UGRP1|pnSP-1 secretoglobin family 3A member 2 protein-coding 121.5-81 chr5 36301423 36301666 + 1 NA 5' UTR (NM_001161429, exon 1 of 15) 5' UTR (NM_001161429, exon 1 of 15) 358 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 300.333-12 chr22 20458521 20458981 + 1 NA intron (NR_033825, intron 3 of 5) intron (NR_033825, intron 3 of 5) -20926 NM_182895 91179 Hs.474251 NM_153334 ENSG00000244486 SCARF2 NSR1|SREC-II|SREC2|SRECRP-1|VDEGS scavenger receptor class F member 2 protein-coding 235.667-13 chr20 51134925 51135336 + 1 NA Intergenic Intergenic -112023 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 298.5-13 chr4 99072924 99073529 + 1 NA intron (NM_000671, intron 7 of 8) AluY|SINE|Alu 15562 NM_000671 128 Hs.78989 NM_000671 ENSG00000197894 ADH5 ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR|HEL-S-60p alcohol dehydrogenase 5 (class III), chi polypeptide protein-coding 172.333-46 chr20 58117650 58117959 + 1 NA Intergenic L1MC3|LINE|L1 -33098 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 236.667-34 chr5 62617348 62617812 + 1 NA intron (NM_016338, intron 29 of 29) intron (NM_016338, intron 29 of 29) 38761 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 149.333-105 chr9 104721092 104721401 + 1 NA Intergenic Intergenic -26437 NM_001329570 25934 Hs.530275 NM_015469 ENSG00000136783 NIPSNAP3A HSPC299|NIPSNAP4|TASSC nipsnap homolog 3A protein-coding 209.333-3 chr1 108602107 108602535 + 1 NA intron (NM_001010883, intron 2 of 10) MLT1C|LTR|ERVL-MaLR 42221 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 193.667-44 chr6 76257310 76257941 + 1 NA Intergenic Intergenic -184947 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 116.667-31 chr14 40336072 40336325 + 1 NA Intergenic Intergenic -618513 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 190.333-35 chr2 199828786 199829415 + 1 NA intron (NM_001363886, intron 3 of 4) intron (NM_001363886, intron 3 of 4) 22073 NM_001350854 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 241.667-24 chr3 94461726 94462167 + 1 NA Intergenic Intergenic 398885 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 116.167-81 chr8 136412300 136412426 + 1 NA Intergenic Intergenic -118435 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 227.5-4 chr1 241404211 241404614 + 1 NA Intergenic L2c|LINE|L2 -47182 NM_001282775 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 237.333-6 chr11 92336817 92337288 + 1 NA intron (NM_001367949, intron 1 of 27) intron (NM_001367949, intron 1 of 27) -15044 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 324.667-5 chr22 46475717 46476267 + 1 NA intron (NM_014246, intron 1 of 34) intron (NM_014246, intron 1 of 34) 61628 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 113.5-31 chr12 96707079 96707239 + 1 NA intron (NM_001306084, intron 47 of 67) L2a|LINE|L2 -200098 NM_152905 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 176.667-13 chr10 55153886 55154076 + 1 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -352690 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 232.333-28 chr5 120587706 120588160 + 1 NA intron (NM_001308088, intron 1 of 3) Tigger1|DNA|TcMar-Tigger 56469 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 177.5-26 chr14 22376260 22376578 + 1 NA Intergenic Intergenic 56334 NR_148363 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 181.833-16 chr15 48163853 48164293 + 1 NA intron (NR_125408, intron 4 of 8) Tigger1|DNA|TcMar-Tigger 14222 NM_016132 50804 Hs.6638 NM_016132 ENSG00000104177 MYEF2 HsT18564|MEF-2|MST156|MSTP156|myEF-2 myelin expression factor 2 protein-coding 212.333-3 chr10 28126440 28126814 + 1 NA intron (NR_134518, intron 5 of 16) intron (NR_134518, intron 5 of 16) -53249 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 204.667-12 chr11 82442520 82442789 + 1 NA Intergenic AluSg|SINE|Alu -38741 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 123.167-84 chr5 161742469 161742742 + 1 NA Intergenic Intergenic 56884 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 207.667-42 chr6 7199173 7199516 + 1 NA intron (NM_001003699, intron 6 of 12) intron (NM_001003699, intron 6 of 12) 91383 NM_001003699 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 114.667-38 chr17 55881038 55881167 + 1 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 129997 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 242.667-20 chr4 45478881 45479215 + 1 NA Intergenic Intergenic 645006 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 160.667-75 chr7 131235022 131235287 + 1 NA intron (NM_001145354, intron 2 of 18) intron (NM_001145354, intron 2 of 18) 92625 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 199.5-39 chr7 3744506 3745003 + 1 NA intron (NM_152744, intron 4 of 44) AluY|SINE|Alu -384931 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 187.5-30 chr3 99545328 99545545 + 1 NA Intergenic Intergenic -93158 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 165.5-30 chr18 64098181 64098498 + 1 NA intron (NR_027245, intron 2 of 3) intron (NR_027245, intron 2 of 3) -5752 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 133.667-66 chr4 30262883 30263108 + 1 NA Intergenic Intergenic -457374 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 433.5 chr5 116036442 116037077 + 1 NA Intergenic Intergenic -14707 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 113.667-106 chr5 161448045 161448244 + 1 NA intron (NM_000813, intron 5 of 9) LTR86A1|LTR|ERVL 99980 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 226.5-3 chr1 115940376 115940902 + 1 NA intron (NR_125970, intron 2 of 4) MSTA|LTR|ERVL-MaLR 21263 NR_125969 101928995 Hs.559119 NR_125969 ENSG00000228127 LINC01649 - long intergenic non-protein coding RNA 1649 ncRNA 281.5-5 chr3 120104737 120105297 + 1 NA Intergenic AluJb|SINE|Alu -10570 NM_001354596 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 198.167-35 chr8 91335808 91336307 + 1 NA intron (NM_001282357, intron 7 of 18) MER115|DNA|hAT-Tip100 86738 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 215.667-10 chr10 111982774 111983210 + 1 NA Intergenic Intergenic 200773 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 250.333-18 chr4 106191458 106191948 + 1 NA intron (NM_001290768, intron 23 of 26) intron (NM_001290768, intron 23 of 26) -123907 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 282.5-4 chr14 46786019 46786405 + 1 NA Intergenic Intergenic -134431 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 116.167-46 chr3 51597482 51597745 + 1 NA intron (NM_001322253, intron 4 of 23) AluSx|SINE|Alu 56024 NM_001322257 23132 Hs.105399 NM_015106 ENSG00000164080 RAD54L2 ARIP4|HSPC325|SRISNF2L RAD54 like 2 protein-coding 121.167-28 chr15 92148790 92149136 + 1 NA intron (NR_135775, intron 8 of 10) intron (NR_135775, intron 8 of 10) -244918 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 312.333-2 chr10 70027704 70028027 + 1 NA Intergenic AluSx3|SINE|Alu -24981 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 184.5-12 chr12 12277179 12277516 + 1 NA Intergenic L1M4|LINE|L1 -10303 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 210.667-59 chrX 43599417 43599762 + 1 NA Intergenic Intergenic -55318 NM_000240 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 192.167-35 chr5 107596263 107596653 + 1 NA intron (NM_001962, intron 1 of 4) L1MB2|LINE|L1 74479 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 173.167-23 chr20 19728643 19728830 + 1 NA Intergenic Intergenic -157785 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 210.5-33 chr4 44842557 44842858 + 1 NA Intergenic Intergenic -116073 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 149.5-44 chr3 41376337 41376532 + 1 NA intron (NM_001322500, intron 35 of 35) L1PA3|LINE|L1 176929 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 125.333-109 chr6 160554055 160554220 + 1 NA intron (NM_005577, intron 30 of 38) L1ME2|LINE|L1 -43013 NR_028093 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 244.667-13 chr2 74985479 74985772 + 1 NA Intergenic Intergenic 26982 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 220.333-12 chr18 54621671 54622062 + 1 NA Intergenic Intergenic 30707 NM_173629 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 193.5-41 chr4 163839793 163840149 + 1 NA intron (NM_001166373, intron 3 of 7) L1M5|LINE|L1 -226437 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 225.167-24 chr4 98406888 98407165 + 1 NA intron (NM_021159, intron 7 of 14) L1ME3B|LINE|L1 145642 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 132.5-63 chr4 14198096 14198445 + 1 NA Intergenic Intergenic 86302 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 264.333-5 chr11 83027538 83027978 + 1 NA intron (NM_001286060, intron 1 of 4) L1MB8|LINE|L1 6516 NM_001286059 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 148.333-101 chr8 77533614 77533871 + 1 NA Intergenic Intergenic 83045 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 196.333-47 chr6 82089438 82089708 + 1 NA intron (NR_149135, intron 1 of 3) MIR|SINE|MIR 12192 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 177.333-39 chr20 2020084 2020432 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -25973 NM_001190899 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 397.833 chr13 113513349 113514191 + 1 NA intron (NR_146222, intron 7 of 11) L1ME4c|LINE|L1 22749 NR_146221 55002 Hs.317593 NM_017905 ENSG00000150403 TMCO3 C13orf11 transmembrane and coiled-coil domains 3 protein-coding 231.333-6 chr1 219033295 219033553 + 1 NA intron (NR_031644, intron 6 of 6) L1MB7|LINE|L1 -114913 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 245.333-7 chr14 44687142 44687425 + 1 NA Intergenic Intergenic 111843 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 149.333-2 chr1 66031079 66031320 + 1 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) 19519 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 244.5-15 chr2 50121398 50121746 + 1 NA intron (NM_001330093, intron 18 of 22) MER2|DNA|TcMar-Tigger -147369 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 161.833-33 chr5 35285152 35285348 + 1 NA Intergenic Intergenic -54763 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 285.667 chr17 63977518 63977860 + 1 NA Intergenic L2b|LINE|L2 -4771 NM_000334 6329 Hs.46038 NM_000334 ENSG00000007314 SCN4A CMS16|HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1 sodium voltage-gated channel alpha subunit 4 protein-coding 122.5-30 chr14 44796928 44797058 + 1 NA intron (NR_146457, intron 2 of 4) intron (NR_146457, intron 2 of 4) 2133 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 184.333-35 chr21 28368798 28369095 + 1 NA Intergenic AluSz6|SINE|Alu -140279 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 122.5-38 chr15 75865910 75866096 + 1 NA intron (NM_001145335, intron 3 of 12) L1MEi|LINE|L1 21959 NM_001145335 92912 Hs.23033 NM_173469 ENSG00000140367 UBE2Q2 - ubiquitin conjugating enzyme E2 Q2 protein-coding 200.667-13 chr11 46319250 46319564 + 1 NA intron (NM_052854, intron 10 of 11) MIRb|SINE|MIR -13519 NM_201532 8525 Hs.502461 NM_003646 ENSG00000149091 DGKZ DAGK5|DAGK6|DGK-ZETA|hDGKzeta diacylglycerol kinase zeta protein-coding 285.5-18 chr8 85349381 85349688 + 1 NA intron (NM_001128830, intron 1 of 8) intron (NM_001128830, intron 1 of 8) -7820 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 254.667-17 chr2 144419542 144419933 + 1 NA intron (NM_001171653, intron 3 of 8) intron (NM_001171653, intron 3 of 8) -86668 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 209.167-20 chr2 194758795 194759037 + 1 NA intron (NR_110223, intron 3 of 3) intron (NR_110223, intron 3 of 3) 28321 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 207.667-51 chrX 41786766 41787115 + 1 NA intron (NM_003688, intron 3 of 26) intron (NM_003688, intron 3 of 26) 62759 NM_080817 27197 Hs.567457 NM_080817 ENSG00000171657 GPR82 - G protein-coupled receptor 82 protein-coding 143.667-37 chr14 34862496 34862708 + 1 NA intron (NM_013448, intron 2 of 26) intron (NM_013448, intron 2 of 26) -11589 NR_160776 112268124 Hs.509140 NR_160776 LOC112268124 - uncharacterized LOC112268124 ncRNA 259.833-12 chr6 123295269 123295531 + 1 NA intron (NM_006073, intron 24 of 40) MER66B|LTR|ERV1 -144204 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 155.5-28 chr2 11505206 11505468 + 1 NA Intergenic Intergenic -28708 NM_014668 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 203.5 chr1 9285679 9285950 + 1 NA Intergenic Intergenic -7080 NM_025106 80176 Hs.8261 NM_025106 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 300.333-5 chr12 21225070 21225535 + 1 NA intron (NM_006446, intron 14 of 14) intron (NM_006446, intron 14 of 14) 94108 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 114.167-38 chr16 82742692 82742836 + 1 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) -30555 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 157.667-27 chr17 57749591 57749902 + 1 NA Intergenic (TCCA)n|Simple_repeat|Simple_repeat -4447 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 282.5-11 chr8 121998877 121999283 + 1 NA Intergenic Intergenic -357640 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 178.5-19 chr12 28781442 28781687 + 1 NA Intergenic Intergenic -367714 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 258.333-23 chr3 55564896 55565241 + 1 NA intron (NM_015576, intron 16 of 16) MLT1J|LTR|ERVL-MaLR -77426 NM_003392 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 189.5-58 chr8 81568502 81568735 + 1 NA Intergenic L1MA3|LINE|L1 -37228 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 215.167-7 chr12 9690466 9690927 + 1 NA intron (NR_036693, intron 3 of 3) L1M4|LINE|L1 20983 NM_001197319 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 152.833-15 chr14 49460022 49460268 + 1 NA Intergenic Intergenic 126235 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 224.667-9 chr12 105138841 105139273 + 1 NA intron (NM_001293640, intron 15 of 32) L1ME3D|LINE|L1 31326 NM_015275 23325 Hs.12144 NM_015275 ENSG00000136051 WASHC4 KIAA1033|MRT43|SWIP WASH complex subunit 4 protein-coding 162.667-67 chr5 127545722 127545902 + 1 NA intron (NM_130809, intron 7 of 8) L1MEg|LINE|L1 28172 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 209.5-13 chr16 48009786 48010041 + 1 NA Intergenic AluJr|SINE|Alu 44224 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 153.833 chr1 10312897 10313174 + 1 NA intron (NM_001365951, intron 22 of 48) intron (NM_001365951, intron 22 of 48) 14069 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 370.833 chr2 73587203 73587637 + 1 NA intron (NM_015120, intron 16 of 22) L1PB2|LINE|L1 55002 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 164.667-3 chr1 86375427 86375651 + 1 NA intron (NM_001007022, intron 8 of 17) intron (NM_001007022, intron 8 of 17) -17852 NR_107010 102465842 NR_107010 ENSG00000278281 MIR7856 hsa-mir-7856 microRNA 7856 ncRNA 500.167 chr19 56784595 56785508 + 1 NA intron (NR_163143, intron 9 of 12) MER102a|DNA|hAT-Charlie 19729 NR_110744 101929059 Hs.607132 NR_110744 ENSG00000286125 ZIM2-AS1 ZIM2as ZIM2 antisense RNA 1 ncRNA 182.833-26 chr2 98875303 98875649 + 1 NA intron (NM_207362, intron 1 of 9) intron (NM_207362, intron 1 of 9) 60749 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 146.333-6 chr10 12701732 12701907 + 1 NA intron (NM_001351032, intron 5 of 11) MLT1J1|LTR|ERVL-MaLR 23534 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 227.833-24 chrX 48082995 48083299 + 1 NA Intergenic ERVL47-int|LTR|ERVL -11489 NM_001282201 57232 Hs.650883 NM_001037735 ENSG00000221994 ZNF630 dJ54B20.2 zinc finger protein 630 protein-coding 205.833-18 chr2 167386630 167386991 + 1 NA Intergenic Intergenic 199438 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 142.667-26 chr13 79084289 79084496 + 1 NA Intergenic Intergenic -244342 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 152.333-57 chr6 90773452 90773748 + 1 NA Intergenic Intergenic -186528 NM_145331 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 197.5-28 chr2 75970055 75970400 + 1 NA Intergenic L1PB1|LINE|L1 -259312 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 174.5-33 chr4 109239655 109239949 + 1 NA intron (NM_198721, intron 3 of 36) Tigger3b|DNA|TcMar-Tigger 62856 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 307.833-3 chr2 84156992 84157415 + 1 NA Intergenic L1MB8|LINE|L1 -133479 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 314.5-10 chr5 129300198 129300639 + 1 NA Intergenic L1PA8A|LINE|L1 96729 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 132.333-89 chr5 161943941 161944182 + 1 NA intron (NR_126372, intron 1 of 2) L1PA15|LINE|L1 57135 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 152.333-62 chr7 134786384 134786612 + 1 NA intron (NM_033157, intron 1 of 14) L2a|LINE|L2 6864 NM_033138 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 153.333-2 chr1 162625666 162625972 + 1 NA Intergenic Intergenic -5044 NM_001354983 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 220.5-4 chr1 168691830 168692131 + 1 NA Intergenic Intergenic 37226 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 155.667-13 chr10 33990989 33991164 + 1 NA Intergenic Intergenic -218396 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 144.5-28 chr14 68742789 68743106 + 1 NA Intergenic MER46C|DNA|TcMar-Tigger 50967 NM_001244698 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 405.5-4 chr16 5419772 5420388 + 1 NA Intergenic MLT1E2|LTR|ERVL-MaLR 196170 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 236.167-16 chr4 49098515 49099120 + 1 NA Intergenic (CATTC)n|Satellite|Satellite 112175 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 123.5-40 chr18 67716385 67716613 + 1 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) 98323 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 160.667-64 chr4 93331502 93331676 + 1 NA intron (NM_001286838, intron 7 of 14) L2a|LINE|L2 -497164 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 204.333-57 chr8 123093305 123093605 + 1 NA intron (NM_001363149, intron 4 of 21) intron (NM_001363149, intron 4 of 21) 20206 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 178.333-48 chr7 106659192 106659708 + 1 NA 3' UTR (NM_175884, exon 1 of 1) 3' UTR (NM_175884, exon 1 of 1) 1708 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 152.333-69 chr9 33838392 33838630 + 1 NA intron (NM_017811, intron 1 of 4) intron (NM_017811, intron 1 of 4) 21351 NM_017811 54926 Hs.643648 NM_017811 ENSG00000107341 UBE2R2 CDC34B|E2-CDC34B|UBC3B ubiquitin conjugating enzyme E2 R2 protein-coding 169.167-3 chr1 229419777 229420147 + 1 NA Intergenic Intergenic 14134 NM_001100 58 Hs.1288 NM_001100 ENSG00000143632 ACTA1 ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3|SHPM actin alpha 1, skeletal muscle protein-coding 269.5-3 chr10 61598500 61598965 + 1 NA Intergenic MIRb|SINE|MIR -64197 NM_001366905 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 229.333-2 chr1 104109841 104110221 + 1 NA Intergenic L1MC1|LINE|L1 37008 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 293.667-10 chr4 53054169 53054853 + 1 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 192194 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 115.167-77 chr4 119228423 119228607 + 1 NA intron (NM_001371399, intron 2 of 16) MLT1E2|LTR|ERVL-MaLR 15802 NM_001371395 297.833-6 chr3 62828685 62829214 + 1 NA intron (NM_003716, intron 1 of 29) intron (NM_003716, intron 1 of 29) 46467 NM_183394 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 200.167-14 chr13 47943324 47943574 + 1 NA intron (NM_003850, intron 10 of 10) intron (NM_003850, intron 10 of 10) -10827 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 145.333-82 chr7 88358749 88358946 + 1 NA Intergenic Intergenic -51953 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 240.667 chr1 33722792 33723197 + 1 NA intron (NM_052896, intron 19 of 69) L1ME4a|LINE|L1 -137481 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 144.5-5 chr1 114303649 114303867 + 1 NA Intergenic MER113|DNA|hAT-Charlie -149889 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 172.167-5 chr1 222598287 222598561 + 1 NA Intergenic Intergenic 8465 NR_110614 100506161 Hs.553851 NR_110613 ENSG00000225265 TAF1A-AS1 - TAF1A antisense RNA 1 ncRNA 133.167-5 chr1 227239435 227239757 + 1 NA intron (NM_001366019, intron 2 of 36) L1MC1|LINE|L1 78896 NM_001366010 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 133.667-84 chr7 4440162 4440311 + 1 NA Intergenic MER20B|DNA|hAT-Charlie -242059 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 267.667-20 chr8 88831419 88831718 + 1 NA Intergenic Intergenic -504085 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 310.5-16 chr7 31709040 31709499 + 1 NA TTS (NM_006658) TTS (NM_006658) 22054 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 154.333-17 chr12 18464537 18465027 + 1 NA intron (NM_001288774, intron 18 of 32) L1ME3D|LINE|L1 203242 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 158.333-58 chr5 35794538 35794775 + 1 NA intron (NM_024867, intron 32 of 36) intron (NM_024867, intron 32 of 36) -62235 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 188.667-56 chr6 84319429 84319717 + 1 NA Intergenic Intergenic -91930 NM_001286206 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 202.333-3 chr10 55722174 55722394 + 1 NA Intergenic L1MC|LINE|L1 -94342 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 150.667-18 chr11 73212338 73212672 + 1 NA Intergenic L1M5|LINE|L1 -5776 NM_002564 5029 Hs.339 NM_002564 ENSG00000175591 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y2 protein-coding 213.5-24 chr3 12100456 12100762 + 1 NA intron (NM_133625, intron 1 of 12) L1MB7|LINE|L1 58303 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 119.667-83 chr5 112622365 112622595 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR -5956 NR_104672 102467214 Hs.124613 NR_104672 LINC02200 - long intergenic non-protein coding RNA 2200 ncRNA 173.333-43 chr3 98454097 98454678 + 1 NA Intergenic AluJr|SINE|Alu -15093 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 196.667-19 chr18 3961931 3962170 + 1 NA promoter-TSS (NR_102696) promoter-TSS (NR_102696) -303 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 226.833-8 chr15 89215067 89215607 + 1 NA intron (NM_000326, intron 5 of 8) MIRc|SINE|MIR 6242 NM_000326 6017 Hs.1933 NM_000326 ENSG00000140522 RLBP1 CRALBP retinaldehyde binding protein 1 protein-coding 131.667-92 chr4 74106470 74106754 + 1 NA Intergenic L2b|LINE|L2 -7417 NM_002089 2920 Hs.75765 NM_002089 ENSG00000081041 CXCL2 CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2 C-X-C motif chemokine ligand 2 protein-coding 211.333-30 chr2 214586180 214586421 + 1 NA Intergenic Intergenic 76118 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 168.167-40 chr4 30317379 30317755 + 1 NA Intergenic Intergenic -402802 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 258.167-9 chr3 143542765 143543125 + 1 NA intron (NM_173653, intron 9 of 15) X7A_LINE|LINE|CR1 200699 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 221.333-35 chr8 117799911 117800346 + 1 NA intron (NM_000127, intron 10 of 10) intron (NM_000127, intron 10 of 10) 120785 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 134.333-19 chr11 16852143 16852328 + 1 NA intron (NM_001329630, intron 7 of 26) intron (NM_001329630, intron 7 of 26) 73787 NR_145810 109623465 NR_145810 SNORD147 - small nucleolar RNA, C/D box 147 snoRNA 316.5-4 chr7 77640479 77641206 + 1 NA TTS (NM_002835) TTS (NM_002835) 55423 NR_134251 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 198.167-36 chr8 101334805 101335201 + 1 NA Intergenic L1ME3A|LINE|L1 -33890 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 160.167-47 chr4 36313186 36313617 + 1 NA intron (NM_001170700, intron 7 of 9) intron (NM_001170700, intron 7 of 9) 31785 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 375.667 chr1 198791877 198792583 + 1 NA Intergenic Intergenic 66752 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 138.667-43 chr2 21770679 21770980 + 1 NA Intergenic Intergenic -60177 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 157.667-69 chr7 116751548 116751727 + 1 NA intron (NM_000245, intron 5 of 20) intron (NM_000245, intron 5 of 20) 79441 NM_001324401 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 189.333-12 chr14 72807489 72807805 + 1 NA intron (NM_001280542, intron 1 of 10) MSTB2|LTR|ERVL-MaLR 85002 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 123.333-80 chr3 189690042 189690179 + 1 NA intron (NM_003722, intron 1 of 13) MIRc|SINE|MIR 58721 NM_001114978 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 293.333-4 chr13 110148017 110148647 + 1 NA TTS (NM_001845) TTS (NM_001845) 26630 NR_148221 105370361 Hs.134728 NR_148221 LOC105370361 - uncharacterized LOC105370361 ncRNA 230.333-27 chr6 156220614 156221066 + 1 NA Intergenic L1MEf|LINE|L1 -157910 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 267.333-14 chr2 206300831 206301293 + 1 NA intron (NM_001369654, intron 5 of 5) L1ME3G|LINE|L1 26052 NM_001285549 57683 Hs.110489 NM_020923 ENSG00000204186 ZDBF2 Slx9 zinc finger DBF-type containing 2 protein-coding 160.167-15 chr14 54190579 54190796 + 1 NA Intergenic Intergenic -206181 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 222.5-11 chr2 70570116 70570429 + 1 NA Intergenic Intergenic -16446 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 220.5-22 chr21 29881033 29881349 + 1 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 58805 NM_001320621 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 210.5-31 chr3 120985717 120986086 + 1 NA intron (NR_145517, intron 3 of 8) L1M2|LINE|L1 -63739 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 212.5-28 chr6 144555915 144556198 + 1 NA intron (NM_007124, intron 48 of 73) intron (NM_007124, intron 48 of 73) 150401 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 195.667-5 chr1 231738701 231739023 + 1 NA intron (NM_001164544, intron 3 of 8) L1MC4|LINE|L1 79655 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 127.333-26 chr12 55089420 55089636 + 1 NA Intergenic L3|LINE|CR1 -40241 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 284.5-3 chr1 106927385 106927841 + 1 NA Intergenic Intergenic 109374 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 480.667 chr2 26324887 26325601 + 1 NA intron (NR_135916, intron 1 of 12) intron (NR_135916, intron 1 of 12) -6142 NM_001145169 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 227.667-16 chr3 81846411 81846887 + 1 NA Intergenic Intergenic -85004 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 308.333-2 chr1 195416878 195417330 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR 671611 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 160.667-6 chr1 114866061 114866394 + 1 NA intron (NM_001282542, intron 8 of 30) L1MC1|LINE|L1 11364 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 129.833-70 chr8 40004328 40004726 + 1 NA intron (NM_194294, intron 8 of 10) (TAGA)n|Simple_repeat|Simple_repeat 69572 NM_194294 169355 Hs.676257 NM_194294 ENSG00000188676 IDO2 INDOL1 indoleamine 2,3-dioxygenase 2 protein-coding 134.333-27 chr12 56858568 56858782 + 1 NA Intergenic L1MC4|LINE|L1 75733 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 152.333-51 chr5 22631297 22631592 + 1 NA intron (NM_004061, intron 1 of 14) L1PA15|LINE|L1 221900 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 147.667-32 chr2 134812166 134812421 + 1 NA Intergenic MER115|DNA|hAT-Tip100 -26323 NM_001307983 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 202.667-6 chr10 50979667 50980121 + 1 NA Intergenic Intergenic -10994 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 242.833-5 chr2 144996572 144996899 + 1 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 328768 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 211.333-27 chr2 57449282 57449629 + 1 NA Intergenic Intergenic -458196 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 230.167-20 chr5 103948539 103949053 + 1 NA Intergenic Intergenic -386007 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 207.833-5 chr10 53196514 53196892 + 1 NA Intergenic L1MB1|LINE|L1 -425003 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 143.667-27 chr12 39167656 39167834 + 1 NA Intergenic Intergenic -262154 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 151.333-32 chr17 32199489 32199707 + 1 NA intron (NM_001033566, intron 13 of 19) intron (NM_001033566, intron 13 of 19) -48027 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo 290.5-10 chr18 13556914 13557285 + 1 NA intron (NM_181482, intron 4 of 5) AluJr4|SINE|Alu -54015 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 209.333-38 chr5 40346499 40346874 + 1 NA Intergenic Intergenic 294395 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 168.667-51 chr22 29911913 29912201 + 1 NA intron (NM_153051, intron 1 of 18) intron (NM_153051, intron 1 of 18) 28883 NM_021090 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 118.667-109 chr7 91740521 91740852 + 1 NA Intergenic L1MA2|LINE|L1 140016 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 363.333-2 chr10 25723566 25724300 + 1 NA intron (NR_108068, intron 2 of 2) intron (NR_108068, intron 2 of 2) 72221 NR_108067 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 173.667-7 chr11 14652001 14652404 + 1 NA intron (NM_000922, intron 1 of 15) L1M3|LINE|L1 8398 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 353.667-2 chr3 145755225 145755827 + 1 NA Intergenic Intergenic 313659 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 165.5-10 chr11 27450469 27450858 + 1 NA intron (NM_018490, intron 1 of 17) AluSp|SINE|Alu -21068 NR_131170 105376671 Hs.568999 NR_131169 ENSG00000254862 LOC105376671 lnc-BBOX1-1 uncharacterized LOC105376671 ncRNA 262.667-37 chr8 123336657 123337002 + 1 NA intron (NM_014109, intron 21 of 27) intron (NM_014109, intron 21 of 27) -11205 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 150.667-24 chr12 95099846 95100029 + 1 NA intron (NM_018351, intron 14 of 20) L2a|LINE|L2 -26319 NM_001032287 7181 Hs.108301 NM_003297 ENSG00000120798 NR2C1 TR2 nuclear receptor subfamily 2 group C member 1 protein-coding 166.167-34 chr4 53597824 53598067 + 1 NA intron (NR_046827, intron 1 of 1) intron (NR_046827, intron 1 of 1) 4989 NR_046827 100873955 Hs.351074 NR_046827 LNX1-AS2 - LNX1 antisense RNA 2 ncRNA 320.333-4 chr2 225877034 225877399 + 1 NA Intergenic MLT1E|LTR|ERVL-MaLR -265578 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 288.5-8 chr4 94370874 94371221 + 1 NA Intergenic Intergenic -28211 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 302.833-6 chr4 63934492 63934894 + 1 NA Intergenic L1MA5|LINE|L1 474757 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 158.5-76 chr7 29126860 29127132 + 1 NA intron (NR_120523, intron 2 of 2) intron (NR_120523, intron 2 of 2) 1963 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 167.667-66 chr4 83601208 83601416 + 1 NA intron (NM_001256421, intron 12 of 12) LTR82A|LTR|ERVL 65204 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 349.333-4 chr6 118870047 118870448 + 1 NA intron (NM_017696, intron 6 of 11) L1M3de|LINE|L1 -23905 NM_014034 25842 Hs.292316 NM_014034 ENSG00000111875 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 131.5-42 chr20 8834181 8834439 + 1 NA intron (NM_182734, intron 32 of 32) L2a|LINE|L2 3125 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 290.5-11 chr18 73801479 73802048 + 1 NA Intergenic Intergenic 346071 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 149.667-35 chr2 39405268 39405542 + 1 NA intron (NM_003618, intron 1 of 33) L1M1|LINE|L1 31880 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 135.5-23 chr12 53597976 53598220 + 1 NA intron (NR_073163, intron 2 of 12) intron (NR_073163, intron 2 of 12) 27892 NM_001366562 11016 Hs.12286 NM_006856 ENSG00000170653 ATF7 ATFA activating transcription factor 7 protein-coding 264.5-14 chr5 56977012 56977479 + 1 NA Intergenic Tigger13a|DNA|TcMar-Tigger -25115 NM_001297598 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 273.667-5 chr13 61238819 61239121 + 1 NA Intergenic Intergenic -39090 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 196.833-18 chr4 110821460 110821986 + 1 NA Intergenic MER115|DNA|hAT-Tip100 38924 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 178.333-50 chr8 90221460 90221763 + 1 NA non-coding (NR_051989, exon 1 of 4) non-coding (NR_051989, exon 1 of 4) 123 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 286.5-7 chr2 104660234 104660742 + 1 NA Intergenic Intergenic 97231 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 236.667-13 chr17 13263530 13263824 + 1 NA Intergenic Intergenic 43083 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 241.333-19 chr3 194154899 194155254 + 1 NA Intergenic Intergenic 18928 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 350.833-2 chr4 24307794 24308183 + 1 NA intron (NM_001330752, intron 1 of 13) intron (NM_001330752, intron 1 of 13) 164917 NR_148981 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 274.667-16 chr8 125209870 125210437 + 1 NA intron (NM_001349486, intron 5 of 7) MIR|SINE|MIR 118293 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 266.667-16 chr4 64892178 64892857 + 1 NA Intergenic Intergenic 111983 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 312.333-11 chr6 92335587 92336193 + 1 NA Intergenic Intergenic -645462 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 167.333-27 chr17 53285138 53285451 + 1 NA Intergenic MIR|SINE|MIR 299789 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 149.333-77 chr5 144335197 144335451 + 1 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 129933 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 164.333-81 chr8 72853891 72854173 + 1 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 121987 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 288.333-10 chr5 117510112 117510711 + 1 NA intron (NR_046089, intron 3 of 5) L1MA9|LINE|L1 94899 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 366.667-3 chr13 68747216 68747651 + 1 NA Intergenic MIR|SINE|MIR 137892 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 124.667-8 chr1 191871600 191871817 + 1 NA Intergenic MER52-int|LTR|ERV1 -286754 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 163.333-8 chr10 25911153 25911410 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR 22429 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 212.333-2 chr10 15696440 15696782 + 1 NA intron (NM_001291494, intron 2 of 28) intron (NM_001291494, intron 2 of 28) 23311 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 211.667-22 chr2 203536257 203536528 + 1 NA Intergenic Intergenic -1091 NM_001329728 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 247.5-18 chr21 30695961 30696434 + 1 NA Intergenic L1MC1|LINE|L1 22580 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 236.833-14 chr6 121539490 121539893 + 1 NA Intergenic Intergenic 104045 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 142.333-44 chr18 3248964 3249308 + 1 NA intron (NM_006471, intron 1 of 3) intron (NM_006471, intron 1 of 3) 1606 NM_006471 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 251.667-17 chr5 89062336 89062657 + 1 NA intron (NR_136221, intron 3 of 6) AluSx|SINE|Alu -158391 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 143.667-33 chr13 33286939 33287161 + 1 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) -1295 NM_178006 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 150.333-22 chr11 76723263 76723512 + 1 NA Intergenic Intergenic -1598 NR_024042 390226 Hs.440026 NR_024042 GUCY2EP GC-E|GCD|GUCY2E guanylate cyclase 2E, pseudogene pseudo 179.167-10 chr11 21575445 21575679 + 1 NA 3' UTR (NM_006157, exon 20 of 20) 3' UTR (NM_006157, exon 20 of 20) -617523 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 158.667-29 chr15 68377005 68377234 + 1 NA intron (NM_001004439, intron 2 of 29) intron (NM_001004439, intron 2 of 29) 55044 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 298.667-3 chr15 60941410 60941933 + 1 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 260102 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 134.5-30 chr14 70694150 70694306 + 1 NA Intergenic L2a|LINE|L2 -4470 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 245.667-31 chr7 72468951 72469372 + 1 NA Intergenic L1MB5|LINE|L1 -22018 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 217.5-6 chr12 59173274 59173608 + 1 NA Intergenic Intergenic -252903 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 146.5-3 chr1 154696535 154696710 + 1 NA TTS (NM_001365837) TTS (NM_001365837) -68625 NM_001365046 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase RNA specific protein-coding 261.167-11 chr2 155144689 155145056 + 1 NA Intergenic Intergenic 446177 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 241.667-4 chr11 21762681 21762984 + 1 NA Intergenic AluSx|SINE|Alu -430253 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 234.5-3 chr1 221638448 221638767 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR 98293 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 125.667-69 chr21 28226697 28226943 + 1 NA intron (NR_126012, intron 1 of 5) intron (NR_126012, intron 1 of 5) 1847 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 177.333-71 chrX 76422899 76423235 + 1 NA Intergenic Intergenic -4643 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 190.667-52 chr7 36038887 36039185 + 1 NA Intergenic AluY|SINE|Alu -56274 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 136.5-22 chr12 5070796 5071110 + 1 NA Intergenic Intergenic 27074 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 156.333-32 chr15 50627215 50627427 + 1 NA intron (NR_149154, intron 11 of 37) L2a|LINE|L2 59476 NR_149153 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 209.5-26 chr3 97530730 97531229 + 1 NA intron (NM_001080448, intron 10 of 17) intron (NM_001080448, intron 10 of 17) 91372 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 215.333-45 chr6 112482736 112483159 + 1 NA Intergenic Intergenic 135617 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 186.5-45 chr3 95143805 95144054 + 1 NA Intergenic Intergenic 205666 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 211.167-13 chr17 73186740 73187256 + 1 NA Intergenic AluSx1|SINE|Alu -6057 NM_018714 9382 Hs.103555 NM_018714 ENSG00000166685 COG1 CDG2G|LDLB component of oligomeric golgi complex 1 protein-coding 181.167-11 chr2 57249940 57250292 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR -657535 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 119.5-76 chr5 18716780 18716954 + 1 NA Intergenic L1M5|LINE|L1 909593 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 132.5-98 chr8 87675087 87675357 + 1 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 198793 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 195.333-55 chr7 122387215 122387474 + 1 NA intron (NM_001167940, intron 23 of 29) intron (NM_001167940, intron 23 of 29) -82594 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 143.333-64 chr4 181341937 181342110 + 1 NA Intergenic Intergenic -76994 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 229.667-11 chr17 76400063 76400552 + 1 NA intron (NM_022066, intron 7 of 17) intron (NM_022066, intron 7 of 17) 15029 NM_001142602 8877 Hs.68061 NM_021972 ENSG00000176170 SPHK1 SPHK sphingosine kinase 1 protein-coding 139.833-35 chr18 6220684 6220936 + 1 NA intron (NM_001365769, intron 10 of 16) intron (NM_001365769, intron 10 of 16) -35934 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 246.167-8 chr14 61109868 61110211 + 1 NA Intergenic Intergenic -128349 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 156.667-53 chr2 121234256 121234559 + 1 NA intron (NM_014553, intron 11 of 14) intron (NM_014553, intron 11 of 14) 50795 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 128.333-117 chr8 88778247 88778487 + 1 NA Intergenic L1MEc|LINE|L1 -450884 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 189.5-16 chr14 57297402 57297880 + 1 NA non-coding (NR_026895, exon 7 of 7) non-coding (NR_026895, exon 7 of 7) 28670 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 132.833-20 chr14 67557596 67557758 + 1 NA intron (NM_020715, intron 4 of 28) MIRb|SINE|MIR -23827 NM_001348546 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 311.333-13 chr9 30372100 30372711 + 1 NA Intergenic L1M4c|LINE|L1 36049 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 256.667-24 chr6 150106724 150107033 + 1 NA Intergenic L2b|LINE|L2 -36166 NM_030949 81706 Hs.486798 NM_030949 ENSG00000198729 PPP1R14C CPI17-like|KEPI|NY-BR-81 protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding 163.667-3 chr1 89952351 89952564 + 1 NA Intergenic Intergenic 42509 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem nuclear organelle associated protein 8 pseudogene 4 pseudo 167.333-24 chr15 67847957 67848174 + 1 NA Intergenic MamGypLTR3a|LTR|Gypsy -8020 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 279.5-5 chr3 89439109 89439597 + 1 NA intron (NM_005233, intron 13 of 16) AluJb|SINE|Alu 331732 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 209.333-7 chr11 68248767 68249126 + 1 NA Intergenic L1M4|LINE|L1 23027 NM_022338 53838 Hs.303025 NM_022338 ENSG00000171067 C11orf24 DM4E3 chromosome 11 open reading frame 24 protein-coding 172.333 chr1 43296901 43297124 + 1 NA Intergenic Intergenic -3970 NM_005424 7075 Hs.78824 NM_005424 ENSG00000066056 TIE1 JTK14|TIE tyrosine kinase with immunoglobulin like and EGF like domains 1 protein-coding 183.667-85 chrX 136675727 136676013 + 1 NA intron (NM_001306177, intron 17 of 20) intron (NM_001306177, intron 17 of 20) 27693 NM_000074 959 Hs.592244 NM_000074 ENSG00000102245 CD40LG CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L CD40 ligand protein-coding 152.333-61 chr7 79133462 79133670 + 1 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 124578 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 136.333-12 chr10 81290028 81290215 + 1 NA Intergenic L1PA15|LINE|L1 -585073 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 172.167-37 chr4 150893050 150893266 + 1 NA intron (NM_001367550, intron 16 of 56) intron (NM_001367550, intron 16 of 56) 122109 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 323.667-4 chr17 43706776 43707309 + 1 NA Intergenic Intergenic -45120 NM_004527 4222 Hs.438 NM_004527 ENSG00000005102 MEOX1 KFS2|MOX1 mesenchyme homeobox 1 protein-coding 204.333-14 chr13 34279236 34279540 + 1 NA Intergenic MIRb|SINE|MIR -68655 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 249.667-30 chr4 13853199 13853733 + 1 NA intron (NR_121681, intron 3 of 3) intron (NR_121681, intron 3 of 3) 198287 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 147.667-41 chr3 20910356 20910582 + 1 NA Intergenic Intergenic -495257 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 188.333-54 chr6 126753539 126753859 + 1 NA Intergenic Intergenic 269068 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 123.667-58 chr2 202134465 202134623 + 1 NA intron (NM_001277372, intron 12 of 23) intron (NM_001277372, intron 12 of 23) -17486 NR_135244 729224 Hs.623895 NR_135243 KIAA2012-AS1 - KIAA2012 antisense RNA 1 ncRNA 245.5-13 chr3 22022815 22023314 + 1 NA Intergenic Intergenic 65925 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 206.833-14 chr20 52139160 52139430 + 1 NA intron (NM_199427, intron 5 of 8) L1PA16|LINE|L1 -33811 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 241.5-10 chr18 41428597 41428948 + 1 NA Intergenic Intergenic 91905 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 211.667-12 chr14 45357947 45358341 + 1 NA Intergenic L3|LINE|CR1 -104942 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 283.333-15 chr8 126333200 126333589 + 1 NA Intergenic Intergenic 7899 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 262.5-25 chr8 125135447 125135880 + 1 NA intron (NM_001349486, intron 3 of 7) L1MEc|LINE|L1 43803 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 264.333-15 chr6 39102349 39102765 + 1 NA Intergenic Intergenic 12629 NM_001304793 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 181.5-12 chr11 110786790 110787171 + 1 NA Intergenic Intergenic -73791 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 170.333-51 chr3 176109349 176109685 + 1 NA Intergenic Intergenic -135034 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 146.5-22 chr12 104709709 104709980 + 1 NA intron (NM_018413, intron 2 of 2) L1MB7|LINE|L1 118211 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 139.333-79 chr5 121103340 121103551 + 1 NA Intergenic Intergenic -219105 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 125.667-63 chr2 133399344 133399550 + 1 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 133252 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 298.667-12 chr6 57114206 57114689 + 1 NA TTS (NR_110742) TTS (NR_110742) 24259 NM_001031623 26036 Hs.485628 NM_015555 ENSG00000112200 ZNF451 COASTER|dJ417I1.1 zinc finger protein 451 protein-coding 193.333-32 chr2 154962488 154962827 + 1 NA Intergenic Intergenic 263962 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 210.167-9 chr13 42597438 42597748 + 1 NA intron (NM_003701, intron 2 of 4) intron (NM_003701, intron 2 of 4) 23441 NM_003701 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf TNF superfamily member 11 protein-coding 170.333-14 chr11 65686628 65686834 + 1 NA Intergenic MER66-int|LTR|ERV1 -23759 NM_001243985 5970 Hs.502875 NM_021975 ENSG00000173039 RELA CMCU|NFKB3|p65 RELA proto-oncogene, NF-kB subunit protein-coding 126.333-97 chr6 145321601 145321811 + 1 NA Intergenic L3b|LINE|CR1 365171 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 192.333-45 chr5 63396783 63397403 + 1 NA Intergenic Intergenic 565199 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 298.333-7 chr17 58867314 58867659 + 1 NA intron (NM_014906, intron 1 of 6) ERV24_Prim-int|LTR|ERV1 111617 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 246.667-13 chr2 150455903 150456192 + 1 NA Intergenic Intergenic 31648 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 372.833-4 chr5 159242045 159243062 + 1 NA intron (NR_134261, intron 2 of 2) L1ME3D|LINE|L1 14838 NR_134261 105377682 NR_134261 ENSG00000253315 LINC01932 - long intergenic non-protein coding RNA 1932 ncRNA 148.5-66 chr7 50971449 50971644 + 1 NA Intergenic Intergenic -178093 NM_001371008 136.5-70 chr4 147620004 147620226 + 1 NA intron (NM_018241, intron 1 of 9) L2a|LINE|L2 2718 NM_018241 55751 Hs.203896 NM_018241 ENSG00000164168 TMEM184C TMEM34 transmembrane protein 184C protein-coding 305.5-3 chr2 196696228 196696816 + 1 NA intron (NM_001080539, intron 14 of 27) intron (NM_001080539, intron 14 of 27) 16490 NR_034036 100130452 Hs.591625 NR_034036 LOC100130452 - uncharacterized LOC100130452 ncRNA 282.167-13 chr3 96521491 96521921 + 1 NA Intergenic Intergenic 161742 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 236.667-4 chr1 202836889 202837335 + 1 NA Intergenic Intergenic 16855 NR_038135 641515 Hs.23459 NR_038135 ENSG00000184774 MGAT4EP - MGAT4 family member E, pseudogene pseudo 311.333-6 chr2 167236460 167237014 + 1 NA intron (NM_001199144, intron 3 of 8) intron (NM_001199144, intron 3 of 8) 49365 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 215.5-23 chr2 123058389 123058727 + 1 NA Intergenic Intergenic 14923 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 256.5-8 chr14 52187334 52187763 + 1 NA Intergenic Intergenic -80150 NM_000953 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 173.5-52 chr7 33876887 33877146 + 1 NA Intergenic Intergenic -27899 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 133.5-55 chr5 60404553 60404715 + 1 NA intron (NM_001364599, intron 1 of 16) MER3|DNA|hAT-Charlie -31971 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 230.833-26 chr9 32837828 32838432 + 1 NA Intergenic Intergenic 54590 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 134.667-110 chr8 121545706 121546023 + 1 NA Intergenic Intergenic -93482 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 132.333-78 chr4 145826438 145826593 + 1 NA intron (NM_178835, intron 7 of 14) MER44A|DNA|TcMar-Tigger 112308 NM_178835 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 220.833-3 chr10 115681554 115681946 + 1 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 513039 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 139.333-65 chr4 14352562 14352921 + 1 NA Intergenic Intergenic 240773 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 293.333-12 chr4 170228100 170228960 + 1 NA intron (NR_125889, intron 1 of 2) intron (NR_125889, intron 1 of 2) 1939 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 158.5-7 chr1 244398623 244398850 + 1 NA Intergenic MLT2B1|LTR|ERVL 46101 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 149.167-35 chr21 31286777 31286961 + 1 NA intron (NM_001353686, intron 2 of 27) intron (NM_001353686, intron 2 of 27) 57485 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 128.333-114 chr7 115295696 115295946 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR -64466 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 256.833-3 chr10 106294424 106294893 + 1 NA Intergenic MER57E1|LTR|ERV1 154493 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 221.333-17 chr3 145667106 145667547 + 1 NA Intergenic Tigger2a|DNA|TcMar-Tigger 401859 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 250.333 chr1 43487760 43488300 + 1 NA Intergenic L1MB7|LINE|L1 -34041 NM_001190880 81888 Hs.709864 NM_031207 ENSG00000178922 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 155.333-74 chr4 90393437 90393774 + 1 NA intron (NM_207491, intron 3 of 7) intron (NM_207491, intron 3 of 7) 158574 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 121.5-41 chr15 62554777 62554937 + 1 NA Intergenic Intergenic 90324 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 173.5-47 chr5 119921467 119921703 + 1 NA Intergenic L1PA13|LINE|L1 292026 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 201.667-48 chr8 80062781 80063049 + 1 NA intron (NR_105034, intron 1 of 4) AluJr4|SINE|Alu 17915 NM_001287140 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 262.5-26 chr8 127199365 127199781 + 1 NA Intergenic ORSL-2b|DNA|hAT-Tip100 -1946 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 141.333-77 chr5 85199687 85200008 + 1 NA Intergenic L1ME1|LINE|L1 -814967 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 295.333-7 chr2 22530797 22531142 + 1 NA Intergenic Intergenic -5510 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 143.5-55 chr3 107601954 107602190 + 1 NA intron (NM_001276286, intron 2 of 16) Tigger1|DNA|TcMar-Tigger 79110 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 176.667-25 chr16 85173949 85174256 + 1 NA Intergenic Intergenic -33694 NR_162142 113219463 NR_162142 MIR12128 - microRNA 12128 ncRNA 165.167-20 chr2 26073872 26074082 + 1 NA intron (NM_016131, intron 1 of 5) intron (NM_016131, intron 1 of 5) 39893 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 231.333-13 chr14 44715315 44715651 + 1 NA Intergenic L2a|LINE|L2 83643 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 241.5-16 chr20 11310771 11311045 + 1 NA Intergenic Intergenic -37525 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 314.333-6 chr8 109603066 109603410 + 1 NA intron (NM_001099754, intron 3 of 6) intron (NM_001099754, intron 3 of 6) 221 NM_001363032 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 191.667-17 chr2 14482172 14482392 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity -81324 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 145.5-29 chr18 22862303 22862493 + 1 NA Intergenic Intergenic -70930 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 262.333-5 chr12 57741502 57741936 + 1 NA intron (NM_014770, intron 1 of 17) intron (NM_014770, intron 1 of 17) 442 NM_014770 116986 Hs.302435 NM_014770 ENSG00000135439 AGAP2 CENTG1|GGAP2|PIKE ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 protein-coding 143.667-48 chr16 72236237 72236505 + 1 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -63921 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 125.167-33 chr18 47534548 47534850 + 1 NA intron (NR_147192, intron 1 of 2) intron (NR_147192, intron 1 of 2) 154203 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 366.5-4 chr4 154456751 154457401 + 1 NA intron (NM_001358235, intron 1 of 19) L2c|LINE|L2 34723 NM_001358235 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 184.667-38 chr4 90664284 90664528 + 1 NA intron (NM_207491, intron 6 of 7) intron (NM_207491, intron 6 of 7) 429375 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 252.333-26 chr8 134077035 134077365 + 1 NA Intergenic L1MEd|LINE|L1 190704 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 191.667-16 chr17 31123138 31123434 + 1 NA intron (NM_001042492, intron 1 of 57) intron (NM_001042492, intron 1 of 57) 28309 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 171.667-35 chr17 58528757 58529111 + 1 NA promoter-TSS (NM_001256822) promoter-TSS (NM_001256822) 533 NM_004574 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 158.333-2 chr1 51487661 51487910 + 1 NA intron (NM_001981, intron 1 of 24) intron (NM_001981, intron 1 of 24) 31481 NM_001981 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 263.333-4 chr12 15396620 15397152 + 1 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 74378 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 297.667-5 chr5 15980974 15981508 + 1 NA Intergenic HAL1ME|LINE|L1 46059 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 183.5-42 chr22 26139345 26139665 + 1 NA Intergenic Intergenic -29957 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 157.667-26 chr16 71263954 71264402 + 1 NA Intergenic Intergenic 25224 NM_001324374 55783 Hs.72782 NM_018348 ENSG00000180917 CMTR2 AFT|FTSJD1|HMTr2|MTr2 cap methyltransferase 2 protein-coding 220.667-35 chr6 35430987 35431398 + 1 NA Intergenic AluSx3|SINE|Alu -21169 NM_021922 2178 Hs.302003 NM_021922 ENSG00000112039 FANCE FACE|FAE FA complementation group E protein-coding 128.5-59 chr5 6638649 6639049 + 1 NA intron (NM_001324322, intron 1 of 3) intron (NM_001324322, intron 1 of 3) 5409 NM_001047 6715 Hs.552 NM_001047 ENSG00000145545 SRD5A1 S5AR 1 steroid 5 alpha-reductase 1 protein-coding 176.667-80 chr8 138290211 138290430 + 1 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) -206775 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 155.5-56 chr8 79469418 79469632 + 1 NA Intergenic Intergenic 137337 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 115.5-56 chr2 236170574 236170735 + 1 NA Intergenic Intergenic -2268 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 210.333-14 chr18 7270748 7271124 + 1 NA Intergenic AluSx1|SINE|Alu 39832 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 216.5-13 chr2 35337591 35337979 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -133620 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 207.833-21 chr22 46179311 46179611 + 1 NA intron (NM_001362872, intron 3 of 8) L1MD|LINE|L1 28666 NM_001362873 5465 Hs.103110 NM_005036 ENSG00000186951 PPARA NR1C1|PPAR|PPARalpha|hPPAR peroxisome proliferator activated receptor alpha protein-coding 230.667-12 chr2 79133977 79134304 + 1 NA Intergenic ERVL47-int|LTR|ERVL 4287 NR_002714 5969 Hs.584797 NR_002714 REG1CP REG1P|REGL|RS regenerating family member 1 gamma, pseudogene pseudo 202.5-21 chr4 122836484 122836738 + 1 NA intron (NM_001361665, intron 1 of 2) intron (NM_001361665, intron 1 of 2) 9780 NM_001361665 2247 Hs.284244 NM_002006 ENSG00000138685 FGF2 BFGF|FGF-2|FGFB|HBGF-2 fibroblast growth factor 2 protein-coding 235.5-7 chr11 116360664 116361017 + 1 NA Intergenic Intergenic -278582 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 177.667-50 chr3 46780778 46781066 + 1 NA Intergenic L1MC2|LINE|L1 -24067 NR_160552 100288960 NR_160552 PRSS43P PRSS43|TESSP3 serine protease 43, pseudogene pseudo 155.667-70 chr7 4640549 4640739 + 1 NA Intergenic L1MA3|LINE|L1 -41651 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 165.5-39 chr3 74296631 74296943 + 1 NA intron (NM_020872, intron 17 of 21) MIR|SINE|MIR 224353 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 243.5-9 chr14 51857777 51858154 + 1 NA Intergenic Intergenic -2647 NM_053064 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 273.5-19 chr4 111241164 111241598 + 1 NA Intergenic L2b|LINE|L2 -380734 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 181.667-46 chr4 95447329 95447832 + 1 NA intron (NM_003728, intron 1 of 15) AluSx1|SINE|Alu 101393 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 249.833 chr1 87818616 87818904 + 1 NA Intergenic L2a|LINE|L2 -447105 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 113.333-75 chr3 132838524 132838780 + 1 NA intron (NR_002811, intron 9 of 10) MER58A|DNA|hAT-Charlie -116193 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 164.333-27 chr18 5344245 5344500 + 1 NA Intergenic L1M5|LINE|L1 -47319 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 181.833-6 chr10 24475072 24475453 + 1 NA intron (NM_001282770, intron 2 of 11) intron (NM_001282770, intron 2 of 11) 8731 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 197.167-15 chr15 94731067 94731597 + 1 NA Intergenic Intergenic -124031 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 126.5-58 chr3 56695345 56695498 + 1 NA Intergenic L2b|LINE|L2 -12156 NM_001365638 23272 Hs.116877 NM_015224 ENSG00000163946 TASOR C3orf63|FAM208A|RAP140|TASOR1|se89-1 transcription activation suppressor protein-coding 289.667-12 chr7 153614646 153615126 + 1 NA Intergenic L1MC4a|LINE|L1 -133247 NM_001364500 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 159.667-44 chr19 13359117 13359318 + 1 NA intron (NM_023035, intron 6 of 46) MER115|DNA|hAT-Tip100 147243 NM_001127221 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 243.667-22 chr3 105840968 105841428 + 1 NA intron (NR_135807, intron 3 of 20) AluSx|SINE|Alu 26393 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 236.667-22 chr20 45239590 45239958 + 1 NA Intergenic L3|LINE|CR1 14790 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 188.5-15 chr14 50443068 50443497 + 1 NA intron (NM_198794, intron 20 of 31) intron (NM_198794, intron 20 of 31) -45984 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 255.333-4 chr11 40868799 40869144 + 1 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -575841 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 161.667-61 chr4 115121975 115122327 + 1 NA Intergenic Intergenic -8531 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 219.667-34 chr9 28343763 28344228 + 1 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 375310 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 154.667 chr1 47909955 47910290 + 1 NA intron (NM_001194986, intron 2 of 6) AluJb|SINE|Alu 87263 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 253.5-23 chr7 18561377 18561679 + 1 NA intron (NM_001204147, intron 1 of 9) L1MB8|LINE|L1 52258 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 125.667-12 chr1 242413178 242413337 + 1 NA intron (NM_001320272, intron 2 of 10) L3|LINE|CR1 36211 NM_001195812 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 148.167-70 chr6 17127850 17128120 + 1 NA intron (NM_001190766, intron 3 of 4) intron (NM_001190766, intron 3 of 4) 25727 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 132.333-19 chr11 13862554 13862765 + 1 NA intron (NR_149109, intron 3 of 3) intron (NR_149109, intron 3 of 3) 7957 NR_149109 105376561 Hs.512244 NR_149109 ENSG00000254930 LINC02545 - long intergenic non-protein coding RNA 2545 ncRNA 128.667-91 chr5 8676542 8676805 + 1 NA Intergenic MLT1G3|LTR|ERVL-MaLR -163059 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 150.5-59 chr4 157997257 157997744 + 1 NA Intergenic L2|LINE|L2 -173252 NR_147408 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 151.833-22 chr17 27898880 27899047 + 1 NA Intergenic AluSp|SINE|Alu -5598 NM_001076680 201229 Hs.687951 NM_001076680 ENSG00000232859 LYRM9 C17orf108|HSD24 LYR motif containing 9 protein-coding 274.833 chr1 79303677 79304110 + 1 NA Intergenic Intergenic -297163 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 212.5-34 chr9 102292737 102293048 + 1 NA Intergenic Intergenic -226745 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 157.667-48 chr3 77099747 77100105 + 1 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 1914 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 271.5-23 chr8 137320088 137320536 + 1 NA Intergenic Intergenic 93276 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 255.667-11 chr17 62733759 62734109 + 1 NA intron (NM_001288780, intron 7 of 10) AluSz|SINE|Alu 27728 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 235.667-15 chr3 27943215 27943625 + 1 NA Intergenic LTR67B|LTR|ERVL -109284 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 207.333-20 chr14 84625799 84626019 + 1 NA Intergenic L1MEc|LINE|L1 -646023 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 422.167 chr1 77288697 77289615 + 1 NA intron (NM_012093, intron 2 of 13) intron (NM_012093, intron 2 of 13) 6069 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 139.5-50 chr4 125883259 125883789 + 1 NA Intergenic Intergenic 376265 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 179.333-14 chr12 63170196 63170446 + 1 NA Intergenic Intergenic -17511 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 146.667-19 chr11 104278252 104278443 + 1 NA Intergenic Intergenic -114200 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 212.167-12 chr20 47103825 47104216 + 1 NA intron (NM_172110, intron 9 of 13) L1MB7|LINE|L1 -62947 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 177.667-28 chr15 91839169 91839475 + 1 NA Intergenic L1ME4a|LINE|L1 -14386 NM_013272 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 157.333-59 chr5 76576822 76577275 + 1 NA intron (NM_006633, intron 5 of 35) intron (NM_006633, intron 5 of 35) 29639 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 163.833-50 chr7 7409509 7409732 + 1 NA intron (NM_001037763, intron 27 of 34) intron (NM_001037763, intron 27 of 34) 126253 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 234.167-18 chr8 87084284 87084843 + 1 NA intron (NM_173538, intron 4 of 10) L1MEf|LINE|L1 218148 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 220.333-8 chr14 66935243 66935559 + 1 NA intron (NM_020806, intron 8 of 22) intron (NM_020806, intron 8 of 22) -254039 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 170.333-39 chr2 201852608 201852816 + 1 NA intron (NM_001366386, intron 9 of 13) intron (NM_001366386, intron 9 of 13) 46133 NM_001261435 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 310.167-5 chr4 61176405 61177165 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -24445 NM_001322246 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 210.5-5 chr10 89747897 89748174 + 1 NA intron (NM_016195, intron 23 of 32) AluSq2|SINE|Alu 46445 NM_001284259 9585 Hs.240 NM_016195 ENSG00000138182 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 231.5-6 chr14 71549347 71549712 + 1 NA intron (NM_001354289, intron 5 of 23) intron (NM_001354289, intron 5 of 23) -36769 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 237.5-30 chr8 65254994 65255231 + 1 NA Intergenic L2b|LINE|L2 -74772 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 283.333-14 chr8 89008612 89008951 + 1 NA Intergenic (TGTA)n|Simple_repeat|Simple_repeat -681298 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 196.5-26 chr3 142789655 142790003 + 1 NA intron (NM_001251845, intron 7 of 12) L2a|LINE|L2 65405 NM_003304 7220 Hs.250687 NM_003304 ENSG00000144935 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel subfamily C member 1 protein-coding 228.5-22 chr3 111817652 111817906 + 1 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) -41401 NM_145753 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 269.667 chr1 28127312 28127888 + 1 NA Intergenic MIRb|SINE|MIR -38963 NM_001282562 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 232.833-7 chr14 71863827 71864206 + 1 NA Intergenic L2c|LINE|L2 -68155 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 144.5-14 chr11 96305046 96305262 + 1 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -36284 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 180.667-79 chr9 89034679 89035098 + 1 NA intron (NM_016848, intron 11 of 11) LTR14B|LTR|ERVK 43420 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 178.667-68 chr8 72765769 72766085 + 1 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 33882 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 159.667-28 chr12 63371721 63372026 + 1 NA Intergenic L1ME2|LINE|L1 -219063 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 139.833-38 chr19 30146695 30146955 + 1 NA Intergenic L1MA1|LINE|L1 204586 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 119.833-94 chr9 98477792 98477920 + 1 NA intron (NM_005458, intron 5 of 18) MIRc|SINE|MIR -222207 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 119.167-85 chr6 55822984 55823282 + 1 NA intron (NM_001329754, intron 1 of 5) intron (NM_001329754, intron 1 of 5) 52457 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 176.833-35 chr8 130245465 130245829 + 1 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 50886 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 174.333-28 chr2 41350029 41350348 + 1 NA Intergenic L1MEd|LINE|L1 -527367 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 211.333-22 chr18 51440637 51440899 + 1 NA intron (NR_040074, intron 1 of 2) intron (NR_040074, intron 1 of 2) 48726 NR_040075 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 136.667-35 chr18 12907623 12907784 + 1 NA Intergenic Intergenic -23368 NM_080423 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 194.667-57 chr6 60230119 60230593 + 1 NA Intergenic ALR/Alpha|Satellite|centr -1343774 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 211.333-12 chr13 83958600 83958922 + 1 NA Intergenic Intergenic -76287 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 183.5-48 chr4 150757940 150758250 + 1 NA intron (NM_001367550, intron 35 of 56) LTR40a|LTR|ERVL 175944 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 210.667-21 chr18 242560 242973 + 1 NA intron (NM_005131, intron 11 of 20) intron (NM_005131, intron 11 of 20) 25281 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 220.167-21 chr4 57816595 57817200 + 1 NA Intergenic L1MC2|LINE|L1 391025 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 124.333-102 chr8 106698833 106698971 + 1 NA intron (NM_181354, intron 5 of 13) L1MEc|LINE|L1 -27205 NM_001198535 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 195.667-7 chr10 27023607 27023867 + 1 NA intron (NM_014915, intron 28 of 33) intron (NM_014915, intron 28 of 33) 76761 NM_001256053 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 136.667-109 chr8 113368096 113368438 + 1 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) 8885 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 115.333-92 chr6 34677463 34677604 + 1 NA intron (NM_022758, intron 1 of 3) intron (NM_022758, intron 1 of 3) -18621 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 191.333-26 chr4 83891886 83892093 + 1 NA Intergenic Intergenic 355881 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 132.833-67 chr8 139329064 139329259 + 1 NA Intergenic L1ME3|LINE|L1 373962 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 139.333-52 chr20 12106330 12106542 + 1 NA Intergenic L1MB1|LINE|L1 188543 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 226.167-7 chr12 23172813 23173232 + 1 NA Intergenic Intergenic -2614 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 289.833-9 chr8 100692903 100693522 + 1 NA Intergenic L1MC4|LINE|L1 9812 NR_106992 102466854 NR_106992 ENSG00000284570 MIR7705 hsa-mir-7705 microRNA 7705 ncRNA 286.667-8 chr20 55469497 55469975 + 1 NA Intergenic Intergenic -42539 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 188.5-56 chr9 78423634 78423899 + 1 NA Intergenic L1ME4a|LINE|L1 126641 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 139.667-93 chr8 112145369 112145552 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR -498033 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 129.5-31 chr17 66882546 66882880 + 1 NA intron (NM_145811, intron 4 of 5) (GATG)n|Simple_repeat|Simple_repeat 47596 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 137.5-86 chr6 132957393 132957609 + 1 NA Intergenic Intergenic -130579 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 229.333-7 chr11 68985980 68986380 + 1 NA Intergenic AluSc8|SINE|Alu -5194 NM_198923 116512 Hs.527802 NM_198923 ENSG00000172938 MRGPRD MRGD|TGR7 MAS related GPR family member D protein-coding 152.5-41 chr3 112288180 112288416 + 1 NA intron (NM_001320531, intron 1 of 27).2 intron (NM_001320531, intron 1 of 27).2 5918 NM_183061 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 183.5-7 chr10 129573215 129573457 + 1 NA intron (NM_002412, intron 2 of 4) L1MD3|LINE|L1 106095 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 160.667-39 chr2 37029777 37030119 + 1 NA intron (NM_019024, intron 22 of 35) (AAAT)n|Simple_repeat|Simple_repeat 54424 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 233.167-24 chr4 58212053 58212728 + 1 NA Intergenic MER4A1|LTR|ERV1 323938 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 228.167 chr10 34585084 34585490 + 1 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 230009 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 199.167-27 chr3 151168109 151168390 + 1 NA intron (NM_053002, intron 10 of 42) intron (NM_053002, intron 10 of 42) 34967 NM_013308 29909 Hs.549152 NM_013308 ENSG00000174946 GPR171 H963 G protein-coupled receptor 171 protein-coding 168.667-53 chr3 22586147 22586444 + 1 NA Intergenic Intergenic 616283 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 312.5 chr10 76077447 76077869 + 1 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 294897 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 136.667-50 chr20 51376870 51377058 + 1 NA Intergenic Intergenic 76013 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 166.167-52 chr5 169145515 169145719 + 1 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 118077 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 157.667-61 chr5 163268593 163268903 + 1 NA Intergenic L1MC4|LINE|L1 -168823 NM_001364023 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 218.667-17 chr2 28247866 28248176 + 1 NA intron (NM_199193, intron 11 of 13) intron (NM_199193, intron 11 of 13) -41060 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 151.5-4 chr1 109953507 109953711 + 1 NA Intergenic Intergenic -31156 NM_001242673 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 346.167 chr5 160034325 160034960 + 1 NA intron (NM_003314, intron 2 of 7) MIRb|SINE|MIR 25503 NM_003314 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 245.667-30 chr6 129266860 129267291 + 1 NA intron (NM_000426, intron 15 of 64) intron (NM_000426, intron 15 of 64) 383934 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 249.833-6 chr13 51310761 51311073 + 1 NA Intergenic Arthur1B|DNA|hAT-Tip100 -30115 NM_001101320 647174 Hs.685891 NM_001101320 ENSG00000253309 SERPINE3 - serpin family E member 3 protein-coding 275.167-16 chr8 36150788 36151263 + 1 NA Intergenic L1MA9|LINE|L1 -440705 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 236.5-28 chr6 110748680 110749075 + 1 NA intron (NM_001300964, intron 1 of 12) intron (NM_001300964, intron 1 of 12) -65744 NM_001287215 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 182.167-34 chr5 147323511 147323883 + 1 NA intron (NM_001112724, intron 4 of 12) MIRb|SINE|MIR 88671 NM_001287740 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 243.333-10 chr15 63095589 63095933 + 1 NA Intergenic Intergenic -26100 NM_032857 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 266.5-16 chr8 73482446 73482934 + 1 NA intron (NM_001164383, intron 8 of 9) intron (NM_001164383, intron 8 of 9) 62616 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 114.5-92 chr8 86028791 86028933 + 1 NA Intergenic Intergenic 40806 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 153.5-22 chr15 52211641 52211858 + 1 NA exon (NM_018728, exon 35 of 41) exon (NM_018728, exon 35 of 41) -20357 NM_016194 10681 Hs.155090 NM_006578 ENSG00000069966 GNB5 GB5|IDDCA|LADCI G protein subunit beta 5 protein-coding 274.667-14 chr8 36188257 36188733 + 1 NA Intergenic Intergenic -478175 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 126.667-99 chr8 100131215 100131479 + 1 NA Intergenic THE1A|LTR|ERVL-MaLR 14470 NR_036491 286151 Hs.339577 NM_001029860 ENSG00000156509 FBXO43 EMI2|ERP1|FBX43 F-box protein 43 protein-coding 134.333-10 chr10 25672484 25672734 + 1 NA intron (NR_108069, intron 3 of 3) LTR53|LTR|ERVL 20897 NR_108067 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 137.833-50 chr7 36561775 36561988 + 1 NA intron (NM_001177507, intron 12 of 19) intron (NM_001177507, intron 12 of 19) 38239 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 207.333-25 chr2 56781201 56781575 + 1 NA Intergenic L1ME1|LINE|L1 -595618 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 211.667-28 chr3 100135952 100136192 + 1 NA intron (NM_001167924, intron 1 of 9) intron (NM_001167924, intron 1 of 9) 21142 NM_001167924 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 228.167-9 chr17 50525177 50525477 + 1 NA intron (NM_001366294, intron 13 of 18) MER1B|DNA|hAT-Charlie -7408 NM_017957 55040 Hs.670090 NM_017957 ENSG00000049283 EPN3 - epsin 3 protein-coding 180.667-25 chr14 84499747 84500025 + 1 NA Intergenic Intergenic -772046 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 344.333-2 chr22 24803274 24803890 + 1 NA Intergenic Intergenic -2629 NM_001098497 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 278.667-18 chr5 161418028 161418465 + 1 NA intron (NM_000813, intron 5 of 9) intron (NM_000813, intron 5 of 9) 129878 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 162.667-79 chr8 56522974 56523248 + 1 NA intron (NR_038236, intron 1 of 2) intron (NR_038236, intron 1 of 2) 36712 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 304.667-16 chr6 51175663 51176302 + 1 NA Intergenic Intergenic 357111 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 218.333-2 chr1 246769303 246769649 + 1 NA Intergenic MIR|SINE|MIR -20141 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 236.5-36 chr9 134781069 134781384 + 1 NA intron (NM_001278074, intron 28 of 65) intron (NM_001278074, intron 28 of 65) 68143 NR_039691 100616333 NR_039691 ENSG00000264744 MIR3689C - microRNA 3689c ncRNA 170.333-4 chr1 111064167 111064703 + 1 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -74948 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 142.5-7 chr1 218645198 218645377 + 1 NA intron (NR_031644, intron 3 of 6) MamRep137|DNA|TcMar? 135192 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 207.167-22 chr3 148162805 148163152 + 1 NA Intergenic Intergenic 84819 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 115.667-27 chr12 65749167 65749485 + 1 NA Intergenic L1MEf|LINE|L1 -75134 NM_001300919 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 280.333-7 chr14 29815391 29815841 + 1 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 111480 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 281.667-3 chr10 32030913 32031390 + 1 NA exon (NM_004521, exon 14 of 26) exon (NM_004521, exon 14 of 26) 25274 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 267.5-12 chr5 19375516 19376071 + 1 NA Intergenic Intergenic 510479 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 221.333-10 chr13 99661642 99662054 + 1 NA intron (NR_104592, intron 1 of 9) intron (NR_104592, intron 1 of 9) 18789 NR_036191 100422861 NR_036191 ENSG00000263615 MIR4306 mir-4306 microRNA 4306 ncRNA 119.5-71 chr4 85836941 85837088 + 1 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) 9077 NM_001287805 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 187.667-2 chr1 82883796 82884084 + 1 NA Intergenic Intergenic -19243 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 169.667-34 chr2 14125379 14125693 + 1 NA Intergenic Intergenic 275422 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 189.333-8 chr12 46566280 46566595 + 1 NA intron (NR_125380, intron 3 of 3) L1MA5A|LINE|L1 182330 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 210.667-25 chr2 138972777 138973168 + 1 NA Intergenic Intergenic 75648 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 244.167-8 chr15 81949400 81949861 + 1 NA Intergenic MIR3|SINE|MIR 96388 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 394.5-2 chr4 69619780 69620385 + 1 NA intron (NM_001301239, intron 1 of 4) L1PREC2|LINE|L1 19560 NM_001301233 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 114.333-102 chr5 104727518 104727703 + 1 NA Intergenic MIR|SINE|MIR -371864 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 155.667-56 chr4 115378312 115378485 + 1 NA Intergenic Intergenic -264778 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 282.333-15 chr4 185118972 185119403 + 1 NA Intergenic Intergenic -24079 NM_001151 291 Hs.246506 NM_001151 ENSG00000151729 SLC25A4 AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1 solute carrier family 25 member 4 protein-coding 160.667-70 chr5 155252323 155252607 + 1 NA Intergenic Intergenic 238710 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 153.5-66 chr6 139963785 139964015 + 1 NA Intergenic Intergenic -12419 NR_121623 100507477 Hs.179213 NR_121622 ENSG00000236013 LOC100507477 - uncharacterized LOC100507477 ncRNA 204.333-51 chr7 121626791 121627273 + 1 NA Intergenic L1MEi|LINE|L1 -230664 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 256.667-7 chr12 44512830 44513160 + 1 NA intron (NM_006159, intron 20 of 20) L1MA5|LINE|L1 362666 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 250.167-3 chr12 41154590 41155067 + 1 NA Intergenic Intergenic -33492 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 224.333-32 chr7 146703291 146703776 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -70738 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 163.5-2 chr1 63459391 63459715 + 1 NA intron (NM_001347145, intron 4 of 7) intron (NM_001347145, intron 4 of 7) 63720 NM_014288 23421 Hs.166539 NM_014288 ENSG00000142856 ITGB3BP CENP-R|CENPR|HSU37139|NRIF3|TAP20 integrin subunit beta 3 binding protein protein-coding 235.167-18 chr4 70399877 70400508 + 1 NA intron (NM_001302807, intron 3 of 3) intron (NM_001302807, intron 3 of 3) 2252 NM_001302807 58503 Hs.661425 NM_021225 ENSG00000171199 OPRPN BPLP|PRL1|PROL1|opiorphin opiorphin prepropeptide protein-coding 148.5-50 chr3 95148962 95149197 + 1 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 210816 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 314.333-2 chr2 148277404 148277751 + 1 NA intron (NM_018328, intron 4 of 14) intron (NM_018328, intron 4 of 14) -255973 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 348.667-2 chr15 66324301 66324848 + 1 NA intron (NM_001323944, intron 11 of 16) L1ME4b|LINE|L1 22768 NR_004388 692149 NR_004388 ENSG00000252712 SCARNA14 U100 small Cajal body-specific RNA 14 ncRNA 171.333-30 chr2 40784310 40784529 + 1 NA Intergenic Intergenic -271984 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 205.667-26 chr18 1801671 1802268 + 1 NA Intergenic Intergenic -442340 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 161.667-52 chr3 55264868 55265152 + 1 NA Intergenic Intergenic 86838 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 196.333-15 chr18 60863882 60864174 + 1 NA Intergenic Charlie21a|DNA|hAT-Charlie -469402 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 113.5-61 chr3 40764659 40764832 + 1 NA Intergenic Intergenic 239785 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 153.667-15 chr11 82091807 82092118 + 1 NA intron (NR_120571, intron 5 of 7) intron (NR_120571, intron 5 of 7) -201126 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 164.167-51 chr5 91290303 91290641 + 1 NA Intergenic (TATAAT)n|Simple_repeat|Simple_repeat 23930 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 183.667-14 chr10 52088979 52089367 + 1 NA intron (NM_001098512, intron 7 of 17) intron (NM_001098512, intron 7 of 17) 224955 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 149.833-58 chr8 105504092 105504478 + 1 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 184742 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 327.667-14 chr9 81203215 81203626 + 1 NA Intergenic Intergenic 486115 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 172.667-45 chr21 28130898 28131173 + 1 NA intron (NR_126010, intron 3 of 4) MSTA-int|LTR|ERVL-MaLR 40632 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 192.5-31 chr3 19709633 19709982 + 1 NA Intergenic MSTD|LTR|ERVL-MaLR 224410 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 201.333-3 chr1 152035793 152036158 + 1 NA intron (NM_005620, intron 1 of 2) MER58B|DNA|hAT-Charlie 1029 NM_005620 6282 Hs.417004 NM_005620 ENSG00000163191 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 241.333-16 chr2 40536448 40536744 + 1 NA Intergenic Intergenic -24161 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 129.5-50 chr2 144064764 144065035 + 1 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 127832 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 201.333-37 chr7 8231933 8232201 + 1 NA intron (NM_001350836, intron 3 of 14) intron (NM_001350836, intron 3 of 14) 29985 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 126.333-18 chr11 91920522 91920686 + 1 NA Intergenic Intergenic -304430 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 153.333-4 chr1 216953949 216954206 + 1 NA intron (NM_001350124, intron 1 of 9) intron (NM_001350124, intron 1 of 9) -14404 NM_001243512 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 129.5-70 chr5 33170830 33171068 + 1 NA Intergenic Intergenic -58786 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 122.667-44 chr2 203577825 203578076 + 1 NA Intergenic Intergenic -42649 NM_001329728 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 134.333 chr1 34685985 34686373 + 1 NA Intergenic L1MB4|LINE|L1 -16485 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 166.333-2 chr1 119803414 119803766 + 1 NA intron (NM_001159353, intron 2 of 2) intron (NM_001159353, intron 2 of 2) 7870 NM_032044 83998 Hs.660883 NM_032044 ENSG00000134193 REG4 GISP|REG-IV|RELP regenerating family member 4 protein-coding 166.333-73 chr7 48824779 48824997 + 1 NA Intergenic L1ME3A|LINE|L1 -99659 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 144.5-87 chr8 88982442 88982787 + 1 NA Intergenic Intergenic -655131 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 193.333-9 chr10 95521624 95521910 + 1 NA intron (NM_001290295, intron 1 of 24) AluJb|SINE|Alu 39604 NM_001290294 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 230.5-10 chr3 48715438 48715807 + 1 NA intron (NM_001190316, intron 1 of 2) (AACA)n|Simple_repeat|Simple_repeat 1599 NR_027438 51447 Hs.595983 NM_016291 ENSG00000068745 IP6K2 IHPK2|InsP6K2|PIUS inositol hexakisphosphate kinase 2 protein-coding 231.333-23 chr3 14659981 14660240 + 1 NA intron (NM_016474, intron 4 of 10) intron (NM_016474, intron 4 of 10) 8348 NM_016474 51244 Hs.517820 NM_016474 ENSG00000154781 CCDC174 C3orf19|HSPC212|IHPM|IHPMR coiled-coil domain containing 174 protein-coding 330.667-9 chr3 82867902 82868335 + 1 NA Intergenic L1M4|LINE|L1 881976 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 177.333-8 chr10 30965595 30965981 + 1 NA intron (NR_026560, intron 1 of 6) L1PA16|LINE|L1 33729 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 205.333-38 chr3 87948325 87948641 + 1 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -34093 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 144.667-29 chr12 42958962 42959231 + 1 NA Intergenic L1MD3|LINE|L1 -196219 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 296.667-11 chr22 25714033 25714435 + 1 NA intron (NM_001362778, intron 16 of 19) intron (NM_001362778, intron 16 of 19) -27954 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 147.667-21 chr15 61318382 61318657 + 1 NA Intergenic L2c|LINE|L2 -89217 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 212.833-27 chrX 46511142 46511413 + 1 NA intron (NM_001190417, intron 5 of 5) L1ME3Cz|LINE|L1 34144 NM_001146291 641339 Hs.636105 NM_001039891 ENSG00000251192 ZNF674 MRX92|ZNF673B zinc finger protein 674 protein-coding 200.333-43 chrX 55977123 55977387 + 1 NA intron (NM_001324105, intron 1 of 5) L1MA9|LINE|L1 68970 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 212.333-40 chr8 130455678 130456065 + 1 NA Intergenic L1MB3|LINE|L1 -12197 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 364.5-4 chr18 2171380 2172088 + 1 NA Intergenic Intergenic 399771 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 256.333-26 chr9 22387307 22387707 + 1 NA Intergenic Intergenic -59317 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 170.333-43 chr20 55137226 55137507 + 1 NA Intergenic Intergenic -285677 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 219.667-8 chr14 62886561 62886865 + 1 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 158745 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 168.167-58 chr8 125780513 125780721 + 1 NA Intergenic Intergenic 170580 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 126.333-113 chr9 10068654 10068949 + 1 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 269409 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 169.5-33 chr2 192872511 192872705 + 1 NA Intergenic Intergenic 122763 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 134.833-38 chr3 155092570 155092943 + 1 NA intron (NM_000902, intron 3 of 22) L1ME1|LINE|L1 12745 NM_001354643 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 127.333-29 chr12 100087501 100087782 + 1 NA intron (NM_001006947, intron 8 of 12) MER46C|DNA|TcMar-Tigger 55233 NM_001006947 23074 Hs.572154 NM_015054 ENSG00000111647 UHRF1BP1L SHIP164 UHRF1 binding protein 1 like protein-coding 115.5-81 chr5 112631722 112631963 + 1 NA TTS (NR_104672) TTS (NR_104672) 3406 NR_104672 102467214 Hs.124613 NR_104672 LINC02200 - long intergenic non-protein coding RNA 2200 ncRNA 201.333-12 chr11 80207358 80207702 + 1 NA Intergenic Intergenic 555273 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 168.5-58 chr6 75286487 75286764 + 1 NA intron (NR_040081, intron 1 of 2) intron (NR_040081, intron 1 of 2) 1611 NR_040081 100506804 Hs.743708 NR_040081 LOC100506804 - uncharacterized LOC100506804 ncRNA 196.333-10 chr14 83328551 83328833 + 1 NA Intergenic MIR|SINE|MIR 686060 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 135.833-31 chr2 24704061 24704300 + 1 NA intron (NM_001362950, intron 11 of 23) intron (NM_001362950, intron 11 of 23) -88935 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 173.167-37 chr6 22642211 22642654 + 1 NA Intergenic MLT1J1|LTR|ERVL-MaLR 72866 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 121.667-2 chr1 104787522 104787713 + 1 NA Intergenic Intergenic 714594 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 302.833-8 chr8 63275730 63276298 + 1 NA Intergenic Intergenic 107011 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 148.667-26 chr17 72193531 72193808 + 1 NA Intergenic MIRc|SINE|MIR 72649 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 227.5-2 chr1 108961951 108962341 + 1 NA intron (NM_015127, intron 1 of 11) intron (NM_015127, intron 1 of 11) 1353 NM_015127 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 223.5-9 chr15 24700826 24701080 + 1 NA Intergenic AluSq2|SINE|Alu 25559 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 227.5-6 chr10 84616181 84616521 + 1 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 191182 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 173.833-20 chr14 54329145 54329592 + 1 NA Intergenic Intergenic -67500 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 261.333-10 chr22 40233092 40233456 + 1 NA intron (NM_015088, intron 1 of 20) AluSz|SINE|Alu 55349 NM_001162501 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 243.333-22 chr8 61908745 61909148 + 1 NA Intergenic AluSx1|SINE|Alu 19107 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 210.5-23 chr2 49860963 49861336 + 1 NA Intergenic Intergenic 113054 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 235.667-3 chr10 107207215 107207569 + 1 NA Intergenic Intergenic -42686 NM_001206569 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 196.333-21 chr2 130295414 130295766 + 1 NA Intergenic L1PB1|LINE|L1 46518 NM_001321119 84317 Hs.104203 NM_032357 ENSG00000136710 CCDC115 CDG2O|ccp1 coiled-coil domain containing 115 protein-coding 320.667-9 chr4 67102505 67103186 + 1 NA Intergenic Tigger7|DNA|TcMar-Tigger 319155 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 242.667-12 chr14 86439551 86440090 + 1 NA Intergenic Intergenic -465958 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 219.333-41 chr8 94366826 94367175 + 1 NA Intergenic Intergenic 69944 NM_001256141 100861412 Hs.30561 NM_001256141 ENSG00000265817 FSBP - fibrinogen silencer binding protein protein-coding 321.167-5 chr2 70239589 70240265 + 1 NA intron (NM_001351511, intron 1 of 12) L1MC5a|LINE|L1 8701 NM_001351521 7072 Hs.413123 NM_022037 ENSG00000116001 TIA1 TIA-1|WDM TIA1 cytotoxic granule associated RNA binding protein protein-coding 268.5-12 chr4 40793063 40793494 + 1 NA intron (NM_024677, intron 8 of 11) AluSz6|SINE|Alu 43323 NM_024677 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 323.167-6 chr8 117271235 117271760 + 1 NA Intergenic OldhAT1|DNA|hAT-Ac 136502 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 212.667-3 chr1 111072652 111072919 + 1 NA Intergenic Intergenic -66598 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 141.5-76 chr6 28062413 28062692 + 1 NA Intergenic L1ME3B|LINE|L1 -10764 NM_001355425 442179 NM_001355425 OR1F12 OR1F12P|OR1F12Q|OR6-12|hs6M1-35P olfactory receptor family 1 subfamily F member 12 protein-coding 158.167-2 chr1 55314759 55314993 + 1 NA Intergenic Intergenic 89235 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 128.833-15 chr10 23123967 23124196 + 1 NA Intergenic L1MEf|LINE|L1 28502 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 115.667-94 chr5 34871243 34871367 + 1 NA intron (NM_001317949, intron 8 of 10) L1MD|LINE|L1 31924 NM_001317949 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 149.5-52 chr5 10877744 10877945 + 1 NA Intergenic MER110|LTR|ERV1 -116610 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 436.667-2 chr7 12355730 12356455 + 1 NA intron (NR_144534, intron 18 of 29) intron (NR_144534, intron 18 of 29) 47773 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 194.333-16 chr15 77182712 77182966 + 1 NA intron (NM_024776, intron 4 of 7) L2|LINE|L2 42565 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 456.833 chr14 67510295 67511301 + 1 NA intron (NM_001348549, intron 1 of 3) intron (NM_001348549, intron 1 of 3) 4417 NM_001348544 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 120.333-44 chr14 73329384 73329548 + 1 NA intron (NM_001005743, intron 4 of 12) intron (NM_001005743, intron 4 of 12) -83465 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 151.333-29 chr16 54224659 54224816 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR 46142 NR_126340 100996338 Hs.232014 NR_126340 LINC02169 - long intergenic non-protein coding RNA 2169 ncRNA 126.833-13 chr10 85347368 85347546 + 1 NA Intergenic Intergenic 85315 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 168.667-48 chr21 31700634 31700860 + 1 NA intron (NM_020706, intron 7 of 19) (T)n|Simple_repeat|Simple_repeat 31371 NM_020706 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 200.333-40 chr8 122455285 122455805 + 1 NA intron (NR_131202, intron 2 of 3) L2|LINE|L2 113099 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 221.333-23 chr6 47205860 47206157 + 1 NA Intergenic Intergenic 103897 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 273.833-2 chr10 53286600 53286997 + 1 NA Intergenic Intergenic -515098 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 249.333-15 chr2 182857815 182858461 + 1 NA intron (NM_001463, intron 2 of 5) L1ME1|LINE|L1 8499 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 284.667-17 chrX 71649965 71650314 + 1 NA Intergenic Charlie4z|DNA|hAT-Charlie 16729 NR_136576 100129291 Hs.558667 NR_136576 ENSG00000237265 LOC100129291 - chromosome X open reading frame 49 pseudogene pseudo 141.667-100 chr6 157708023 157708182 + 1 NA Intergenic LTR8A|LTR|ERV1 -115144 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 272.333-5 chr12 54937427 54937887 + 1 NA Intergenic MLT2B3|LTR|ERVL 36075 NM_001351153 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 198.333-3 chr10 78003090 78003548 + 1 NA intron (NM_007055, intron 16 of 30) intron (NM_007055, intron 16 of 30) 26196 NM_007055 11128 Hs.436896 NM_007055 ENSG00000148606 POLR3A ADDH|HLD7|RPC1|RPC155|WDRTS|hRPC155 RNA polymerase III subunit A protein-coding 239.167-16 chr6 71481293 71481844 + 1 NA Intergenic L2b|LINE|L2 60541 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 213.167-33 chr8 107495429 107495702 + 1 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 2353 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 191.333-8 chr13 32478411 32478713 + 1 NA intron (NM_001320836, intron 6 of 9) intron (NM_001320836, intron 6 of 9) 19930 NR_051980 100462953 Hs.687692 NR_051980 MICOS10P1 CG012|MINOS1P1|N4BP2L2-IT|N4BP2L2-IT1|N4BP2L2IT1 MICOS10 pseudogene 1 pseudo 187.167-38 chr7 87216647 87217104 + 1 NA intron (NR_138030, intron 1 of 3) intron (NR_138030, intron 1 of 3) 2857 NM_024315 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 297.667-7 chr6 20922102 20922616 + 1 NA intron (NM_017774, intron 9 of 15) intron (NM_017774, intron 9 of 15) 387902 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 124.667-30 chr14 34859132 34859529 + 1 NA intron (NM_013448, intron 3 of 26) AluJo|SINE|Alu -14861 NR_160776 112268124 Hs.509140 NR_160776 LOC112268124 - uncharacterized LOC112268124 ncRNA 142.667-98 chr8 83647242 83647474 + 1 NA Intergenic L1ME2|LINE|L1 243600 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 125.5-48 chr22 46682081 46682438 + 1 NA intron (NM_001366660, intron 17 of 17) intron (NM_001366660, intron 17 of 17) 55993 NM_022766 64781 Hs.200668 NM_022766 ENSG00000100422 CERK LK4|dA59H18.2|dA59H18.3|hCERK ceramide kinase protein-coding 249.667-36 chr5 62853310 62854021 + 1 NA Intergenic Intergenic 274846 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 267.667-3 chr10 19549515 19549930 + 1 NA intron (NM_001142308, intron 32 of 39) Tigger1|DNA|TcMar-Tigger 178828 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 134.833-50 chr5 76517277 76517465 + 1 NA intron (NM_006633, intron 2 of 35) intron (NM_006633, intron 2 of 35) -30038 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 198.333-30 chr22 28361274 28361598 + 1 NA intron (NM_001145418, intron 2 of 22) Tigger1|DNA|TcMar-Tigger -98433 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 170.333-45 chr20 55879716 55879934 + 1 NA Intergenic Intergenic 125694 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 229.667-14 chr19 35091345 35091753 + 1 NA intron (NR_024561, intron 1 of 3) AluSx|SINE|Alu 14722 NR_024561 100128675 Hs.633989 NR_024561 ENSG00000227392 HPN-AS1 - HPN antisense RNA 1 ncRNA 164.667-43 chr21 30619252 30619443 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -1280 NM_001350977 100151643 Hs.580879 NM_001350977 ENSG00000206105 KRTAP20-4 KAP20.4 keratin associated protein 20-4 protein-coding 218.5-11 chr15 49284460 49284939 + 1 NA intron (NM_001289030, intron 8 of 10) L2b|LINE|L2 114452 NM_002044 2585 Hs.122006 NM_002044 ENSG00000156958 GALK2 GK2 galactokinase 2 protein-coding 245.5-5 chr13 97304500 97305032 + 1 NA intron (NM_144778, intron 2 of 8) intron (NM_144778, intron 2 of 8) 82433 NM_144778 10150 Hs.657347 NM_144778 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind like splicing regulator 2 protein-coding 156.833-15 chr12 22907585 22907785 + 1 NA Intergenic AluSc8|SINE|Alu -267951 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 241.833 chr1 109579498 109579938 + 1 NA intron (NM_006496, intron 4 of 8) intron (NM_006496, intron 4 of 8) -19175 NR_029583 406974 NR_029583 ENSG00000284443 MIR197 MIRN197|miR-197|miRNA197 microRNA 197 ncRNA 187.667-44 chr6 65696099 65696395 + 1 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 10978 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 243.667-35 chr7 86893282 86893757 + 1 NA intron (NM_001291991, intron 18 of 20) HAL1ME|LINE|L1 72380 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 204.333-30 chr2 212260719 212260954 + 1 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 165524 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 197.667-52 chr7 48460598 48460826 + 1 NA intron (NM_152701, intron 43 of 61) intron (NM_152701, intron 43 of 61) 289254 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 204.667-45 chr8 60599136 60599569 + 1 NA intron (NM_002865, intron 6 of 7) L1MD1|LINE|L1 -79388 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 139.333-91 chr8 114295748 114295967 + 1 NA Intergenic Intergenic -858918 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 219.667-10 chr15 95897109 95897350 + 1 NA Intergenic Intergenic 230612 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 277.5-5 chr18 4235873 4236266 + 1 NA intron (NM_001242761, intron 1 of 11) MIR|SINE|MIR -28533 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 195.333-20 chr2 28832492 28832750 + 1 NA intron (NM_001008779, intron 4 of 4) L2a|LINE|L2 16624 NM_001008779 245711 Hs.511956 NM_182756 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 120.333-101 chr6 43194542 43194744 + 1 NA intron (NM_015089, intron 9 of 40) intron (NM_015089, intron 9 of 40) 12447 NM_015089 23113 Hs.485434 NM_015089 ENSG00000112659 CUL9 H7AP1|PARC cullin 9 protein-coding 230.333 chr1 100313493 100313825 + 1 NA Intergenic L1MC1|LINE|L1 -31356 NM_001319211 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|DFNB32|DFNB35|cdc14|hCDC14 cell division cycle 14A protein-coding 263.833-2 chr1 211251831 211252295 + 1 NA Intergenic L2|LINE|L2 -7214 NR_146434 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 339.5-9 chr8 92450000 92450486 + 1 NA Intergenic Intergenic 205251 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 160.833-18 chr12 41651918 41652178 + 1 NA Intergenic Intergenic -112141 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 140.333-51 chr3 156130436 156130885 + 1 NA intron (NM_172160, intron 1 of 13) intron (NM_172160, intron 1 of 13) 10112 NM_001308217 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 181.333-23 chr17 60801041 60801314 + 1 NA intron (NM_001330413, intron 6 of 25) L1MD2|LINE|L1 123326 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 279.333-10 chr4 125140481 125140889 + 1 NA Intergenic Penelope1_Vert|LINE|Penelope -175727 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 233.167-17 chr18 11990441 11990756 + 1 NA intron (NM_014214, intron 1 of 7) intron (NM_014214, intron 1 of 7) 9091 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol monophosphatase 2 protein-coding 122.333-64 chr21 28912691 28912939 + 1 NA Intergenic L1M5|LINE|L1 -27442 NR_047510 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 162.667-50 chr3 60835742 60835904 + 1 NA intron (NM_001320900, intron 4 of 9) AluJo|SINE|Alu -217953 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 166.333-13 chr11 43322071 43322296 + 1 NA intron (NR_024625, intron 6 of 14) intron (NR_024625, intron 6 of 14) 10187 NM_001243747 8539 Hs.435771 NM_006595 ENSG00000166181 API5 AAC-11|AAC11 apoptosis inhibitor 5 protein-coding 163.5-48 chr3 180665614 180665889 + 1 NA intron (NM_181426, intron 1 of 19) intron (NM_181426, intron 1 of 19) 13738 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 232.833-10 chr2 37141505 37141941 + 1 NA intron (NM_002759, intron 4 of 16) intron (NM_002759, intron 4 of 16) 6099 NM_001135652 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 174.333-9 chr11 93936375 93936577 + 1 NA Intergenic Intergenic -84878 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 186.167-22 chr2 76559996 76560406 + 1 NA Intergenic Plat_L3|LINE|CR1 -425764 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 199.667-58 chr7 41755178 41755548 + 1 NA intron (NR_027118, intron 2 of 3) PABL_A-int|LTR|ERV1 -52273 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 158.167-11 chr15 44049365 44049578 + 1 NA intron (NM_032892, intron 1 of 13) intron (NM_032892, intron 1 of 13) 144975 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 189.833-4 chr12 32908461 32909046 + 1 NA Intergenic AluSq2|SINE|Alu -11907 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 192.333-22 chr2 68164530 68164844 + 1 NA intron (NM_001329916, intron 5 of 5) AluJr|SINE|Alu 6799 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 144.667-75 chr4 136626700 136627137 + 1 NA Intergenic Intergenic -566838 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 155.333-9 chr1 216589217 216589688 + 1 NA intron (NM_001243505, intron 3 of 6) MER30|DNA|hAT-Charlie 133977 NM_001243518 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 149.5-47 chr3 187888658 187888854 + 1 NA Intergenic Intergenic 87651 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 145.667-68 chr3 169282422 169282658 + 1 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -135069 NM_001164000 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 147.333-48 chr21 29626823 29627175 + 1 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 30959 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 392.333 chr16 77762971 77763407 + 1 NA Intergenic Intergenic -25375 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 132.667-36 chr14 101139573 101139757 + 1 NA Intergenic L1M4|LINE|L1 18809 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 161.5-34 chr4 88002647 88002881 + 1 NA Intergenic Intergenic -4871 NR_156488 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 215.667-7 chr10 55509303 55509665 + 1 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -89558 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 169.333-12 chr11 26664712 26664933 + 1 NA Intergenic Intergenic 57238 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 304.5-8 chr21 18522128 18522520 + 1 NA Intergenic Intergenic -118539 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 295.667-9 chr6 149343494 149343812 + 1 NA intron (NM_001369506, intron 2 of 7) intron (NM_001369506, intron 2 of 7) 25353 NM_015093 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 191.167-31 chr6 104253888 104254203 + 1 NA Intergenic Intergenic 605501 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 120.333-104 chr6 146647969 146648111 + 1 NA intron (NM_024694, intron 3 of 35) LTR38-int|LTR|ERV1 49068 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 156.5-53 chr20 39198722 39199050 + 1 NA Intergenic Intergenic 25862 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 153.333-27 chr17 22699883 22700191 + 1 NA Intergenic L1ME1|LINE|L1 176926 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 281.333-12 chr6 149211603 149211922 + 1 NA Intergenic MLT1J1|LTR|ERVL-MaLR -6162 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 301.5-5 chr2 65167703 65168165 + 1 NA Intergenic AluSx|SINE|Alu -37633 NM_015543 5861 Hs.310645 NM_004161 ENSG00000138069 RAB1A RAB1|YPT1 RAB1A, member RAS oncogene family protein-coding 520.333 chr8 125760828 125761685 + 1 NA Intergenic L2c|LINE|L2 189941 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 232.5-20 chr2 215044151 215044535 + 1 NA intron (NR_103740, intron 8 of 54) L1ME2|LINE|L1 -12257 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 172.5-60 chr8 125972978 125973264 + 1 NA Intergenic MSTD|LTR|ERVL-MaLR -21924 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 138.833 chr1 64867214 64867631 + 1 NA intron (NM_002227, intron 6 of 24) intron (NM_002227, intron 6 of 24) 99127 NM_002227 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 226.5-26 chr5 53310654 53310906 + 1 NA Intergenic Intergenic -169849 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 262.667-34 chr7 92342702 92343234 + 1 NA intron (NM_019004, intron 5 of 19) intron (NM_019004, intron 5 of 19) 94346 NR_145992 105375396 NM_001317905 ENSG00000230927 TMBIM7P - transmembrane BAX inhibitor motif containing 7, pseudogene pseudo 190.333-23 chr17 18877991 18878323 + 1 NA intron (NM_001353099, intron 6 of 11) AluJr4|SINE|Alu 12688 NM_001243940 5636 Hs.632236 NM_002767 ENSG00000141127 PRPSAP2 PAP41 phosphoribosyl pyrophosphate synthetase associated protein 2 protein-coding 153.667-36 chr2 45455911 45456421 + 1 NA intron (NM_018079, intron 16 of 20) intron (NM_018079, intron 16 of 20) 155101 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 167.333-3 chr1 95060910 95061207 + 1 NA promoter-TSS (NR_132786) promoter-TSS (NR_132786) -538 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 241.833-11 chr3 119741944 119742523 + 1 NA intron (NM_033364, intron 13 of 17) intron (NM_033364, intron 13 of 17) -38251 NM_003889 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 274.667 chr10 17683014 17683437 + 1 NA intron (NM_001324285, intron 3 of 14) AluJb|SINE|Alu 39074 NM_001324285 8027 Hs.335391 NM_003473 ENSG00000136738 STAM STAM-1|STAM1 signal transducing adaptor molecule protein-coding 141.5-55 chr22 28580743 28580921 + 1 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 99033 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 242.667-34 chr9 82589147 82589592 + 1 NA Intergenic MER131|DNA?|DNA? 473773 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 244.667-7 chr14 47368616 47368982 + 1 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -25553 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 142.5-14 chr11 4961536 4961746 + 1 NA Intergenic Ricksha_b|DNA|MULE-MuDR -5928 NM_001004748 401667 Hs.553805 NM_001004748 ENSG00000205496 OR51A2 - olfactory receptor family 51 subfamily A member 2 protein-coding 156.667-81 chr7 114062626 114062809 + 1 NA Intergenic L1MA8|LINE|L1 -23610 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 185.667-34 chr4 33073238 33073639 + 1 NA Intergenic Intergenic 722400 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 202.667-47 chr8 110226750 110227019 + 1 NA Intergenic L1MA7|LINE|L1 -251113 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 260.667-12 chr2 101025668 101026163 + 1 NA intron (NM_001102426, intron 15 of 19) intron (NM_001102426, intron 15 of 19) 23626 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 194.833-15 chr21 34551173 34551384 + 1 NA intron (NM_004414, intron 1 of 3) intron (NM_004414, intron 1 of 3) -24268 NM_001331016 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 124.333-101 chr8 85879212 85879374 + 1 NA Intergenic MIR3|SINE|MIR -51351 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 197.833-25 chr5 19041039 19041284 + 1 NA Intergenic Intergenic 845111 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 211.5-22 chr4 58932504 58932917 + 1 NA Intergenic L1MB1|LINE|L1 -51572 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 226.333-7 chr14 47310991 47311378 + 1 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 32062 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 189.333-44 chr5 95622942 95623202 + 1 NA TTS (NM_199243) TTS (NM_199243) 2985 NM_199243 285601 Hs.143315 NM_199243 ENSG00000178015 GPR150 PGR11 G protein-coupled receptor 150 protein-coding 188.5-51 chr7 92241272 92241460 + 1 NA intron (NM_001013406, intron 3 of 16) MER5B|DNA|hAT-Charlie -4608 NM_019004 54467 Hs.83293 NM_019004 ENSG00000001629 ANKIB1 - ankyrin repeat and IBR domain containing 1 protein-coding 165.667-61 chr6 75188768 75188996 + 1 NA intron (NM_004370, intron 7 of 65) intron (NM_004370, intron 7 of 65) 17171 NM_004370 1303 Hs.101302 NM_004370 ENSG00000111799 COL12A1 BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2 collagen type XII alpha 1 chain protein-coding 120.333-78 chr3 150804854 150805002 + 1 NA Intergenic L1MC5a|LINE|L1 -41759 NM_005067 6478 Hs.477959 NM_005067 ENSG00000181788 SIAH2 hSiah2 siah E3 ubiquitin protein ligase 2 protein-coding 208.333-23 chr2 96668052 96668422 + 1 NA intron (NM_001293083, intron 14 of 52) intron (NM_001293083, intron 14 of 52) 25473 NM_001293083 90342 Hs.534025 NM_001077400 ENSG00000249715 FER1L5 - fer-1 like family member 5 protein-coding 196.333-26 chr22 20834652 20835083 + 1 NA intron (NM_058004, intron 2 of 54) intron (NM_058004, intron 2 of 54) 23944 NM_058004 5297 Hs.529438 NM_002650 ENSG00000241973 PI4KA PI4K-ALPHA|PIK4CA|PMGYCHA|pi4K230 phosphatidylinositol 4-kinase alpha protein-coding 212.333-12 chr14 67302932 67303279 + 1 NA intron (NM_001256550, intron 7 of 14) MER3|DNA|hAT-Charlie 56699 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 227.333-37 chr6 4773591 4773857 + 1 NA intron (NM_001368125, intron 3 of 8) intron (NM_001368125, intron 3 of 8) -2680 NM_004824 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 289.5 chr1 80342715 80343114 + 1 NA Intergenic Intergenic -192841 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 305.833-6 chr4 38413783 38414233 + 1 NA Intergenic Intergenic 47094 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 252.667-21 chr5 175646788 175647169 + 1 NA Intergenic Intergenic -11093 NM_001367711 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 176.5-34 chr2 203332998 203333291 + 1 NA intron (NM_001282932, intron 1 of 9) intron (NM_001282932, intron 1 of 9) 4750 NM_005759 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 169.333-46 chr3 29412617 29412917 + 1 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 131455 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 203.833-12 chr2 62226849 62227381 + 1 NA Intergenic AluSx3|SINE|Alu 11594 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 151.5-17 chr12 1224641 1224828 + 1 NA intron (NR_027948, intron 12 of 19) AluJo|SINE|Alu 196986 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 252.5-22 chr6 69989928 69990263 + 1 NA intron (NM_001858, intron 11 of 50) intron (NM_001858, intron 11 of 50) 123539 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 150.5-18 chr12 13815582 13815804 + 1 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 164663 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 256.333-18 chr3 179838534 179838821 + 1 NA intron (NM_001349408, intron 8 of 14) intron (NM_001349408, intron 8 of 14) -59517 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 181.667-30 chr2 169493982 169494205 + 1 NA intron (NM_152384, intron 7 of 11) intron (NM_152384, intron 7 of 11) 14599 NM_152384 129880 Hs.233398 NM_152384 ENSG00000163093 BBS5 - Bardet-Biedl syndrome 5 protein-coding 152.833-67 chr7 76339981 76340220 + 1 NA intron (NM_012479, intron 1 of 1) AluSx|SINE|Alu 18891 NM_012479 7532 Hs.744840 NM_012479 ENSG00000170027 YWHAG 14-3-3GAMMA|EIEE56|PPP1R170 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma protein-coding 127.833-81 chr9 89739365 89739569 + 1 NA Intergenic Intergenic 99684 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 223.5-25 chr5 94294564 94294848 + 1 NA intron (NM_001145678, intron 20 of 20) AluSg|SINE|Alu -183007 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 129.333-24 chr13 101567279 101567516 + 1 NA intron (NM_001271756, intron 1 of 9) intron (NM_001271756, intron 1 of 9) 77445 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 195.333-46 chr5 104276420 104276805 + 1 NA Intergenic Intergenic -713823 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 247.333-26 chr8 85091214 85091816 + 1 NA Intergenic L1PA10|LINE|L1 -15723 NM_001349637 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 202.667-42 chr7 42964003 42964441 + 1 NA Intergenic LTR48B|LTR|ERV1 31846 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 212.667-18 chr14 22690353 22690711 + 1 NA Intergenic MamGypLTR1c|LTR|Gypsy -55688 NM_001348233 79549 NM_001348233 ENSG00000255804 OR6J1 OR6J1P|OR6J2 olfactory receptor family 6 subfamily J member 1 (gene/pseudogene) protein-coding 150.333-70 chr3 110317602 110317851 + 1 NA Intergenic Intergenic 714898 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 228.333-4 chr10 48528045 48528393 + 1 NA intron (NR_144642, intron 3 of 9) intron (NR_144642, intron 3 of 9) -16630 NR_146782 100689073 Hs.667964 NR_146782 ARHGAP22-IT1 - ARHGAP22 intronic transcript 1 ncRNA 173.667-44 chr4 46427035 46427425 + 1 NA Intergenic Intergenic -37102 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 177.167-33 chr4 37390973 37391286 + 1 NA intron (NM_001144990, intron 3 of 6) intron (NM_001144990, intron 3 of 6) -62796 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 179.5-41 chr8 134796568 134796841 + 1 NA Intergenic Intergenic 3903 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 215.5-36 chr6 161007755 161008185 + 1 NA intron (NM_005922, intron 1 of 26) intron (NM_005922, intron 1 of 26) 16201 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 177.5-51 chr3 5624567 5624843 + 1 NA Intergenic L1MC3|LINE|L1 -374450 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 166.5-18 chr14 45867313 45867625 + 1 NA Intergenic Charlie3|DNA|hAT-Charlie -151867 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 115.333 chr1 14120482 14120883 + 1 NA Intergenic Intergenic 299291 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 185.667-25 chr2 17454454 17454853 + 1 NA Intergenic Intergenic 63787 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 249.333-13 chr2 69506367 69506719 + 1 NA intron (NM_014911, intron 15 of 21) AluJr|SINE|Alu 13628 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 230.167-12 chr2 109078870 109079261 + 1 NA Intergenic L1MA9|LINE|L1 -50140 NM_001099289 344558 Hs.171244 NM_001099289 ENSG00000172985 SH3RF3 POSH2|SH3MD4 SH3 domain containing ring finger 3 protein-coding 225.5-35 chr3 27115863 27116198 + 1 NA intron (NM_001304384, intron 15 of 16) intron (NM_001304384, intron 15 of 16) 100493 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 229.333-31 chr7 103993064 103993588 + 1 NA Intergenic Intergenic -3668 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 209.5-17 chr18 4970205 4970619 + 1 NA Intergenic Intergenic -110770 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 177.167-5 chr11 86641740 86642157 + 1 NA intron (NM_001014811, intron 1 of 13) intron (NM_001014811, intron 1 of 13) 30250 NR_147831 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 212.5-6 chr13 104465069 104465421 + 1 NA Intergenic Intergenic -1000622 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 249.667-23 chr2 168540049 168540326 + 1 NA intron (NM_001256126, intron 1 of 10) intron (NM_001256126, intron 1 of 10) -42756 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 321.833-2 chr10 115638160 115638795 + 1 NA intron (NM_207303, intron 26 of 28) L1MB8|LINE|L1 545112 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 188.5-42 chr4 5219207 5219472 + 1 NA intron (NM_001306082, intron 4 of 12) intron (NM_001306082, intron 4 of 12) 167859 NM_001345969 55351 Hs.133062 NM_018401 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 208.667-34 chr5 94502209 94502727 + 1 NA intron (NM_001145678, intron 5 of 20) L1ME3G|LINE|L1 116136 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 135.667-77 chr4 77734466 77734688 + 1 NA intron (NM_001365006, intron 8 of 11) L1ME4a|LINE|L1 84487 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 212.5-11 chr2 9242339 9242690 + 1 NA intron (NM_003887, intron 1 of 27) intron (NM_003887, intron 1 of 27) 35702 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 184.5-32 chr3 96284240 96284528 + 1 NA Intergenic Intergenic -75580 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 308.833 chr18 9452132 9452887 + 1 NA Intergenic L1ME2z|LINE|L1 -23004 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 179.667-29 chr2 205997196 205997527 + 1 NA 3' UTR (NM_017759, exon 11 of 11) 3' UTR (NM_017759, exon 11 of 11) 88813 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 152.667-35 chr15 98487789 98488022 + 1 NA intron (NM_182562, intron 2 of 6) AluJb|SINE|Alu 26431 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 168.167-30 chr2 53529571 53530074 + 1 NA Intergenic MIR|SINE|MIR -237961 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 114.667-110 chr6 143740649 143740809 + 1 NA intron (NM_001100165, intron 2 of 11) intron (NM_001100165, intron 2 of 11) 62764 NM_001100164 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 160.5-22 chr18 13028867 13029110 + 1 NA intron (NM_032142, intron 9 of 44) intron (NM_032142, intron 9 of 44) 37626 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 124.167-50 chr2 199727595 199727735 + 1 NA Intergenic L1PA10|LINE|L1 119597 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 376.5 chr1 54772594 54773014 + 1 NA Intergenic Intergenic -8281 NM_152268 25973 Hs.380169 NM_152268 ENSG00000162396 PARS2 EIEE75|MT-PRORS|proRS prolyl-tRNA synthetase 2, mitochondrial protein-coding 196.5-37 chr8 16840429 16840715 + 1 NA Intergenic L1MA4|LINE|L1 161773 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 186.833-41 chr7 4373666 4373999 + 1 NA Intergenic Tigger17a|DNA|TcMar-Tigger -238995 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 200.167-4 chr1 223883593 223883953 + 1 NA Intergenic Intergenic -37801 NM_005426 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 192.667-29 chr20 2906484 2906754 + 1 NA intron (NM_080840, intron 1 of 22) Cheshire|DNA|hAT-Charlie -16588 NM_080841 5786 Hs.269577 NM_002836 ENSG00000132670 PTPRA HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA protein tyrosine phosphatase receptor type A protein-coding 339.667-2 chr12 80682752 80683141 + 1 NA Intergenic Intergenic -24688 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 172.5-55 chr7 38448177 38448445 + 1 NA intron (NM_001635, intron 11 of 20) intron (NM_001635, intron 11 of 20) 106734 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 254.667-5 chr11 103274521 103274854 + 1 NA intron (NM_001377, intron 70 of 88) intron (NM_001377, intron 70 of 88) 165261 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 171.333-15 chr10 59798413 59798830 + 1 NA intron (NM_005436, intron 7 of 8) intron (NM_005436, intron 7 of 8) -45166 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 313.5-7 chr4 45174188 45174937 + 1 NA Intergenic Tigger10|DNA|TcMar-Tigger -447928 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 148.667-20 chr14 33188977 33189188 + 1 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 250203 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 248.833-5 chr12 115731795 115732284 + 1 NA Intergenic MIRc|SINE|MIR 416615 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 178.5-11 chr10 92181637 92181954 + 1 NA intron (NM_001178137, intron 3 of 9) MER58C|DNA|hAT-Charlie 61484 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 204.5-23 chr3 46124294 46124593 + 1 NA Intergenic HSMAR2|DNA|TcMar-Mariner 83870 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 174.5-7 chr10 104010146 104010455 + 1 NA intron (NM_001304743, intron 12 of 17) intron (NM_001304743, intron 12 of 17) 37886 NR_030760 100126326 NR_030760 ENSG00000283788 MIR936 MIRN936|hsa-mir-936 microRNA 936 ncRNA 218.667-15 chr18 29563779 29564144 + 1 NA Intergenic Intergenic -734949 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 228.333-13 chr18 45522388 45522706 + 1 NA intron (NM_001371319, intron 5 of 23) intron (NM_001371319, intron 5 of 23) -15511 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 240.167 chr1 65662600 65663183 + 1 NA Intergenic L1MA9|LINE|L1 -129619 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 136.667-118 chrX 116349594 116349859 + 1 NA Intergenic Intergenic -86880 NM_007231 11254 Hs.522109 NM_007231 ENSG00000268104 SLC6A14 BMIQ11 solute carrier family 6 member 14 protein-coding 135.667-43 chr17 63387207 63387355 + 1 NA intron (NM_025185, intron 14 of 25) intron (NM_025185, intron 14 of 25) 52986 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 144.333-76 chr6 62277795 62278205 + 1 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 8225 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 197.667-18 chr14 56464003 56464367 + 1 NA Intergenic Intergenic -50146 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 184.833-14 chr2 147692654 147693062 + 1 NA Intergenic Intergenic -151659 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 270.667-8 chr18 78238858 78239159 + 1 NA Intergenic CpG -245281 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 141.5-92 chrX 45756482 45756830 + 1 NA Intergenic Intergenic -9532 NR_029636 407007 NR_029636 ENSG00000207725 MIR222 MIRN222|miRNA222|mir-222 microRNA 222 ncRNA 128.667-99 chr6 53650612 53650839 + 1 NA 3' UTR (NM_001003760, exon 3 of 3) 3' UTR (NM_001003760, exon 3 of 3) 15031 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 191.333-28 chr5 29825141 29825362 + 1 NA Intergenic Intergenic -55309 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 152.667-70 chr5 91506448 91506640 + 1 NA Intergenic Intergenic -123227 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 211.5-34 chr8 61024155 61024547 + 1 NA Intergenic Intergenic -56603 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 220.333-18 chr3 23858459 23858855 + 1 NA intron (NM_003341, intron 3 of 5) Charlie18a|DNA|hAT-Charlie 48203 NM_001202476 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 258.333-11 chr13 41321001 41321361 + 1 NA intron (NM_001110798, intron 4 of 10) AluJr|SINE|Alu -9143 NM_001354074 9617 Hs.382176 NM_004294 ENSG00000120662 MTRF1 MRF1|MTTRF1|RF1 mitochondrial translation release factor 1 protein-coding 152.667-80 chr7 113065445 113065735 + 1 NA Intergenic Intergenic 20748 NM_001146266 54329 Hs.152009 NM_018970 ENSG00000164604 GPR85 SREB|SREB2 G protein-coupled receptor 85 protein-coding 279.333-9 chr3 168664333 168664702 + 1 NA intron (NR_021485, intron 5 of 15) intron (NR_021485, intron 5 of 15) 112663 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 258.833-16 chr5 97476674 97477359 + 1 NA Intergenic HAL1M8|LINE|L1 -27680 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 155.667-78 chr8 42024172 42024665 + 1 NA intron (NM_001305878, intron 2 of 13) L1MA4A|LINE|L1 -27332 NR_136589 105379393 Hs.742878 NR_136589 LOC105379393 - uncharacterized LOC105379393 ncRNA 280.5-2 chr1 238351318 238351823 + 1 NA Intergenic Intergenic 134447 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 163.667-22 chr14 65211051 65211227 + 1 NA Intergenic Zaphod3|DNA|hAT-Tip100 11208 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 266.333-14 chr6 39453541 39453914 + 1 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -22337 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 210.333-29 chr4 80034125 80034449 + 1 NA intron (NM_001286781, intron 8 of 16) intron (NM_001286781, intron 8 of 16) 38942 NM_001286781 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 302.667-7 chr17 71980846 71981225 + 1 NA Intergenic MIR|SINE|MIR 44944 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 256.833-8 chr19 28755288 28755795 + 1 NA Intergenic L1PA13|LINE|L1 -27847 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 314.667-3 chr17 61736485 61737001 + 1 NA intron (NM_032043, intron 16 of 19) L2c|LINE|L2 126816 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 249.667-41 chr7 41761546 41762092 + 1 NA intron (NR_027118, intron 2 of 3) MER4D|LTR|ERV1 -58729 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 158.5-13 chr11 68846326 68846593 + 1 NA Intergenic Intergenic -4528 NM_001031847 1374 Hs.503043 NM_001876 ENSG00000110090 CPT1A CPT1|CPT1-L|L-CPT1 carnitine palmitoyltransferase 1A protein-coding 286.667-10 chr22 47611428 47611817 + 1 NA Intergenic Intergenic 19947 NR_033377 400932 Hs.561058 NM_001001693 ENSG00000205634 LINC00898 - long intergenic non-protein coding RNA 898 ncRNA 177.167-15 chr18 6149895 6150374 + 1 NA intron (NM_001365769, intron 13 of 16) intron (NM_001365769, intron 13 of 16) -106610 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 261.333-21 chr6 133032251 133032693 + 1 NA Intergenic Intergenic -55608 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 203.5-4 chr1 158629617 158629993 + 1 NA intron (NM_003126, intron 39 of 51) L1PB2|LINE|L1 23366 NM_001004478 128368 Hs.553590 NM_001004478 ENSG00000198967 OR10Z1 OR1-15 olfactory receptor family 10 subfamily Z member 1 protein-coding 198.5-12 chr15 56474558 56474828 + 1 NA Intergenic L1MEd|LINE|L1 -9556 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 269.667-9 chr12 23613109 23613479 + 1 NA intron (NM_152989, intron 11 of 17) L1MB3|LINE|L1 -28708 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 227.167-21 chr21 36100941 36101567 + 1 NA intron (NR_040084, intron 1 of 3) HUERS-P3b-int|LTR|ERV1 -3627 NR_147887 105369306 NR_147887 ENSG00000233393 LOC105369306 - uncharacterized LOC105369306 ncRNA 145.333-68 chr5 172230227 172230488 + 1 NA intron (NM_152277, intron 2 of 2) intron (NM_152277, intron 2 of 2) 36185 NM_001171183 285588 Hs.716824 NM_001171183 ENSG00000214360 EFCAB9 - EF-hand calcium binding domain 9 protein-coding 165.333-17 chr13 33631597 33631876 + 1 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 45058 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 120.5-28 chr13 91653568 91653699 + 1 NA intron (NM_004466, intron 2 of 7) intron (NM_004466, intron 2 of 7) 255012 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 152.5-5 chr10 121222614 121222774 + 1 NA Intergenic Intergenic 308620 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 262.667-8 chr13 70823683 70824094 + 1 NA Intergenic MIRc|SINE|MIR -191253 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 181.667-5 chr1 106060181 106060488 + 1 NA Intergenic L1M4|LINE|L1 -32081 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 190.833-37 chr6 141063789 141064069 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity 380115 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 210.5-27 chr2 169078270 169078604 + 1 NA intron (NM_001142270, intron 2 of 5) intron (NM_001142270, intron 2 of 5) -2670 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 245.667-26 chr3 103080864 103081266 + 1 NA Intergenic Intergenic 443051 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 137.667-68 chr3 115573240 115573405 + 1 NA Intergenic Intergenic -50188 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 180.667-9 chr10 84429736 84429973 + 1 NA intron (NM_018999, intron 5 of 10) intron (NM_018999, intron 5 of 10) 4685 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 168.167-23 chr17 43707870 43708148 + 1 NA Intergenic Intergenic -46087 NM_004527 4222 Hs.438 NM_004527 ENSG00000005102 MEOX1 KFS2|MOX1 mesenchyme homeobox 1 protein-coding 166.333-48 chr3 29494444 29494667 + 1 NA intron (NM_001003792, intron 3 of 13) intron (NM_001003792, intron 3 of 13) 213243 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 173.333-17 chr12 112751054 112751289 + 1 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) -40367 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 214.833-6 chr13 73787862 73788138 + 1 NA intron (NM_007249, intron 5 of 7) intron (NM_007249, intron 5 of 7) 223756 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 119.5-21 chr11 101971591 101971750 + 1 NA intron (NM_001363543, intron 7 of 11) FLAM_C|SINE|Alu -55148 NM_178127 253935 Hs.318370 NM_178127 ENSG00000187151 ANGPTL5 - angiopoietin like 5 protein-coding 376.5-6 chr14 45950872 45951343 + 1 NA Intergenic MIRb|SINE|MIR -113052 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 223.833-7 chr10 30014074 30014383 + 1 NA 3' UTR (NM_001350001, exon 5 of 5) 3' UTR (NM_001350001, exon 5 of 5) 45358 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 249.833-15 chr9 126818756 126819166 + 1 NA intron (NM_014007, intron 2 of 2) L1M4|LINE|L1 13921 NM_014007 23099 Hs.355581 NM_014007 ENSG00000169155 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 200.333-36 chr7 4192580 4192927 + 1 NA intron (NM_001079653, intron 9 of 19) intron (NM_001079653, intron 9 of 19) -57916 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 240.167-20 chr8 109971193 109971644 + 1 NA intron (NM_014379, intron 3 of 3) intron (NM_014379, intron 3 of 3) 4353 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 285.5-9 chr2 7933159 7933503 + 1 NA intron (NR_015405, intron 2 of 2) intron (NR_015405, intron 2 of 2) -33676 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 266.5-7 chr2 113049691 113050297 + 1 NA intron (NM_173178, intron 1 of 4) L1MB3|LINE|L1 2873 NM_014438 27177 Hs.278909 NM_014438 ENSG00000136696 IL36B FIL1|FIL1-(ETA)|FIL1H|FILI-(ETA)|IL-1F8|IL-1H2|IL1-ETA|IL1F8|IL1H2 interleukin 36 beta protein-coding 303.5 chr10 86188613 86189205 + 1 NA intron (NM_017551, intron 3 of 15) MIR|SINE|MIR 75879 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 187.5-54 chr8 126541431 126541707 + 1 NA Intergenic Intergenic 16909 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 209.667-18 chr16 60762064 60762429 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR 293520 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 124.667-62 chr2 96205639 96205896 + 1 NA intron (NM_020151, intron 1 of 7) intron (NM_020151, intron 1 of 7) -2649 NR_046322 285033 Hs.58648 NM_001037228 STARD7-AS1 - STARD7 antisense RNA 1 ncRNA 297.333-12 chr8 127293482 127293820 + 1 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) 49014 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 171.333-53 chr5 3315872 3316142 + 1 NA Intergenic Intergenic -136809 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 126.167-23 chr14 63822248 63822431 + 1 NA Intergenic L1MB8|LINE|L1 -30626 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 262.167-9 chr2 13103051 13103467 + 1 NA Intergenic MIRc|SINE|MIR -96246 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 117.167-7 chr10 19516201 19516380 + 1 NA intron (NM_001142308, intron 31 of 39) MER34B-int|LTR|ERV1 212260 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 250.5-4 chr14 27734356 27734829 + 1 NA Intergenic L1M6|LINE|L1 -61371 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 174.667-48 chr5 22792255 22792596 + 1 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 60919 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 283.5-4 chr11 76941865 76942333 + 1 NA intron (NM_001300955, intron 2 of 9) L1M2a1|LINE|L1 81181 NM_018367 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 238.333-23 chr4 40098189 40098453 + 1 NA intron (NM_018177, intron 3 of 17) MIR|SINE|MIR -41122 NR_027277 344967 Hs.534633 NR_027277 ENSG00000205794 LOC344967 - acyl-CoA thioesterase 7 pseudogene pseudo 136.5-66 chr4 36147449 36147632 + 1 NA intron (NR_146894, intron 18 of 32) intron (NR_146894, intron 18 of 32) 96399 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 276.333-9 chr17 34989631 34990018 + 1 NA intron (NM_013975, intron 4 of 19) MER45A|DNA|hAT-Tip100 9312 NM_013975 3980 Hs.100299 NM_002311 ENSG00000005156 LIG3 LIG2|LIG3alpha DNA ligase 3 protein-coding 204.667-18 chr12 115375694 115375962 + 1 NA Intergenic Intergenic -691653 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 114.667-16 chr12 427819 427944 + 1 NA intron (NM_001130148, intron 3 of 10) LTR16|LTR|ERVL 26237 NM_001130146 84318 Hs.631656 NM_032358 ENSG00000120647 CCDC77 - coiled-coil domain containing 77 protein-coding 175.667-73 chr8 126185052 126185248 + 1 NA Intergenic Intergenic -140345 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 188.333-15 chr12 85963988 85964314 + 1 NA 3' UTR (NM_001351289, exon 6 of 6) 3' UTR (NM_001351289, exon 6 of 6) 89856 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 301.833-5 chr5 18759243 18759830 + 1 NA Intergenic L2c|LINE|L2 952262 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 116.5-22 chr14 102390233 102390380 + 1 NA intron (NM_014844, intron 2 of 19) intron (NM_014844, intron 2 of 19) 27365 NM_014844 9895 Hs.195667 NM_014844 ENSG00000196663 TECPR2 KIAA0329|SPG49 tectonin beta-propeller repeat containing 2 protein-coding 200.667-39 chr4 75357812 75358103 + 1 NA intron (NR_033964, intron 2 of 3) MER58B|DNA|hAT-Charlie 3881 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 219.5-40 chr7 24734536 24734985 + 1 NA intron (NM_004403, intron 3 of 9) L1MA3|LINE|L1 22704 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 360.333-3 chr12 15519698 15520242 + 1 NA intron (NM_030667, intron 9 of 26) intron (NM_030667, intron 9 of 26) -26641 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 123.5-62 chr5 40945743 40945877 + 1 NA intron (NM_000587, intron 7 of 17) AluJo|SINE|Alu 36313 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 201.667-41 chr7 31389029 31389312 + 1 NA Intergenic L1PB1|LINE|L1 -48444 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 318.5-5 chr19 17636368 17636846 + 1 NA intron (NM_001080421, intron 24 of 41) intron (NM_001080421, intron 24 of 41) 51592 NM_001080421 23025 Hs.164502 NM_001080421 ENSG00000130477 UNC13A Munc13-1 unc-13 homolog A protein-coding 219.167-13 chr17 60270729 60271083 + 1 NA intron (NM_032582, intron 6 of 33) MIR3|SINE|MIR -39261 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 238.667-9 chr15 57794435 57794946 + 1 NA Intergenic Intergenic 87976 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 211.333-18 chr16 57404048 57404325 + 1 NA promoter-TSS (NM_002987) promoter-TSS (NM_002987) -581 NM_002987 6361 Hs.546294 NM_002987 ENSG00000102970 CCL17 A-152E5.3|ABCD-2|SCYA17|TARC C-C motif chemokine ligand 17 protein-coding 163.333-61 chr5 15715928 15716187 + 1 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -101055 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 133.667-93 chr7 113655069 113655337 + 1 NA Intergenic L1MEg|LINE|L1 263806 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 182.667-5 chr10 92187018 92187336 + 1 NA intron (NM_001178137, intron 3 of 9) intron (NM_001178137, intron 3 of 9) 56102 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 158.333-3 chr1 92956250 92956468 + 1 NA intron (NM_001006605, intron 1 of 4) intron (NM_001006605, intron 1 of 4) 5103 NM_001006605 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 197.167-51 chr6 50682553 50682990 + 1 NA Intergenic AluJr|SINE|Alu -30773 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 153.333-22 chr15 83185507 83185705 + 1 NA intron (NM_016073, intron 1 of 5) LTR78|LTR|ERV1 22217 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 339.667-5 chr3 121086476 121087115 + 1 NA intron (NR_145517, intron 5 of 8) Tigger4a|DNA|TcMar-Tigger 37155 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 170.667-35 chr2 124331968 124332419 + 1 NA intron (NM_130773, intron 3 of 23) MER101-int|LTR|ERV1 306906 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 153.5-37 chr20 14518975 14519342 + 1 NA intron (NM_001351663, intron 4 of 17) intron (NM_001351663, intron 4 of 17) -35226 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 132.5-5 chr10 14914054 14914293 + 1 NA intron (NR_110297, intron 15 of 16) L1ME1|LINE|L1 35273 NM_024670 79723 Hs.554883 NM_024670 ENSG00000152455 SUV39H2 KMT1B suppressor of variegation 3-9 homolog 2 protein-coding 161.667-54 chr3 88351474 88351728 + 1 NA intron (NM_001368167, intron 2 of 2) L1ME4a|LINE|L1 13145 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 156.333-30 chr14 61973321 61973632 + 1 NA intron (NM_001367657, intron 3 of 6) intron (NM_001367657, intron 3 of 6) 45781 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 206.667-31 chr3 76204886 76205105 + 1 NA Intergenic Intergenic -419446 NM_001290210 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 147.333-72 chr6 34996174 34996347 + 1 NA intron (NM_015245, intron 10 of 23) L1ME1|LINE|L1 107005 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 197.5-2 chr1 74519341 74519704 + 1 NA intron (NM_015978, intron 23 of 24) L1HS|LINE|L1 -6908 NM_001364666 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 302.333-4 chr2 123064813 123065224 + 1 NA Intergenic Tigger2|DNA|TcMar-Tigger 8463 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 120.833-4 chr10 21042538 21042710 + 1 NA intron (NM_001173484, intron 2 of 6) MER63B|DNA|hAT-Blackjack -131366 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 119.333-110 chr8 82644118 82644309 + 1 NA Intergenic L1MD2|LINE|L1 -267891 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 290.5-6 chr14 72367460 72367927 + 1 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -149127 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 196.5-38 chr8 82929395 82929667 + 1 NA intron (NR_134295, intron 2 of 3) L1MB1|LINE|L1 17427 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 210.667-2 chr1 113082313 113082622 + 1 NA intron (NM_014813, intron 1 of 17) MSTB|LTR|ERVL-MaLR 9269 NM_001312686 9860 Hs.448972 NM_014813 ENSG00000198799 LRIG2 LIG-2|LIG2|UFS2 leucine rich repeats and immunoglobulin like domains 2 protein-coding 297.167-4 chr4 1468602 1469094 + 1 NA Intergenic Intergenic -62406 NM_001290079 54729 Hs.526396 NM_001290079 ENSG00000235608 NKX1-1 HSPX153|NKX-1.1|SAX2 NK1 homeobox 1 protein-coding 237.333-33 chr7 3766618 3767015 + 1 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -362869 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 197.667-10 chr11 20442274 20442664 + 1 NA intron (NM_005788, intron 10 of 15) L1MC5a|LINE|L1 54753 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 133.333-14 chr10 44753266 44753479 + 1 NA Intergenic Intergenic -157944 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 172.5-50 chr5 57595425 57595684 + 1 NA intron (NR_120607, intron 4 of 5) intron (NR_120607, intron 4 of 5) 25212 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 177.667-63 chr6 68946152 68946382 + 1 NA intron (NM_001704, intron 6 of 31) intron (NM_001704, intron 6 of 31) 310985 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 126.333-5 chr1 163087095 163087247 + 1 NA Intergenic Intergenic 15266 NM_001113380 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 156.5-65 chr4 175836289 175836454 + 1 NA intron (NR_048571, intron 1 of 5) L2a|LINE|L2 -23257 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 311.167-4 chr19 28242857 28243253 + 1 NA Intergenic MIR|SINE|MIR -363633 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 201.667-14 chr14 83982970 83983231 + 1 NA Intergenic Intergenic -1288832 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 216.167-11 chr2 51806541 51806970 + 1 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -563893 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 202.667-49 chr8 129264812 129265062 + 1 NA Intergenic Intergenic -23697 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 154.667-61 chr6 119451971 119452224 + 1 NA TTS (NR_046100) TTS (NR_046100) 39205 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 156.333-6 chr1 82238018 82238376 + 1 NA Intergenic L1PA10|LINE|L1 435744 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 305.833 chr10 21559971 21560337 + 1 NA intron (NM_001324297, intron 4 of 24) AluSp|SINE|Alu 25982 NM_001195628 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 259.333-18 chr5 135817601 135817919 + 1 NA intron (NM_001349335, intron 4 of 10) L1M5|LINE|L1 -3998 NM_001365196 107986453 NM_001365196 LOC107986453 - uncharacterized LOC107986453 protein-coding 162.667-62 chr5 40668166 40668519 + 1 NA Intergenic Intergenic -11573 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 191.333-35 chr6 48161290 48161599 + 1 NA Intergenic Intergenic -92755 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 189.5-48 chr5 25539421 25539881 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR 348698 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 198.667-30 chr20 5260209 5260584 + 1 NA Intergenic Intergenic 56336 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 246.333-25 chr9 3846470 3847016 + 1 NA intron (NM_001042413, intron 9 of 10) intron (NM_001042413, intron 9 of 10) -51903 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 117.167-3 chr1 145966896 145967108 + 1 NA intron (NM_032305, intron 1 of 7) L1MC5a|LINE|L1 2312 NM_032305 84265 Hs.591456 NM_032305 ENSG00000121851 POLR3GL RPC32HOM|flj32422 RNA polymerase III subunit G like protein-coding 146.167-2 chr1 78002762 78002992 + 1 NA intron (NM_001317100, intron 2 of 3) intron (NM_001317100, intron 2 of 3) -1951 NM_001317103 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding 154.667-22 chr14 24718054 24718280 + 1 NA Intergenic L1ME1|LINE|L1 -83977 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 170.5-58 chr5 116684592 116684766 + 1 NA Intergenic MIR|SINE|MIR 77530 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 148.667-79 chr8 106480150 106480378 + 1 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 32340 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 131.5-76 chr7 51570738 51570953 + 1 NA Intergenic L1MB7|LINE|L1 -177589 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 307.667-14 chr8 126532651 126533070 + 1 NA Intergenic Intergenic 25618 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 165.667-37 chr2 77117824 77118098 + 1 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 131996 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 210.5-16 chr15 67540302 67540564 + 1 NA Intergenic AluSz|SINE|Alu -2270 NM_145160 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 147.333-75 chr6 140470524 140470747 + 1 NA Intergenic Intergenic -213179 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 207.333-33 chr21 15970054 15970376 + 1 NA Intergenic Intergenic -100273 NR_136541 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 210.833-17 chr2 121852591 121853073 + 1 NA Intergenic HAL1|LINE|L1 97181 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 126.333-85 chr5 21396864 21397061 + 1 NA Intergenic L1MA8|LINE|L1 -62518 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 262.333-7 chr14 38566014 38566349 + 1 NA Intergenic MER4D1|LTR|ERV1 -310088 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 277.833 chr12 4462900 4463379 + 1 NA Intergenic L1MA6|LINE|L1 -17525 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 141.333-81 chr6 4126924 4127133 + 1 NA intron (NM_206836, intron 5 of 9) L1ME2|LINE|L1 8440 NM_001166010 10455 Hs.15250 NM_006117 ENSG00000198721 ECI2 ACBD2|DRS-1|DRS1|HCA88|PECI|dJ1013A10.3 enoyl-CoA delta isomerase 2 protein-coding 154.333-71 chr7 73687530 73687707 + 1 NA intron (NR_045512, intron 5 of 10) AluJb|SINE|Alu 4021 NR_037776 114049 Hs.647063 NM_017528 ENSG00000071462 BUD23 HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22 BUD23 rRNA methyltransferase and ribosome maturation factor protein-coding 279.667-13 chr3 187917767 187918116 + 1 NA Intergenic L4_C_Mam|LINE|RTE-X 58466 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 160.333-66 chr9 29941237 29941418 + 1 NA Intergenic Intergenic 467127 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 262.833-7 chr17 27907558 27907966 + 1 NA Intergenic L2c|LINE|L2 -14397 NM_001076680 201229 Hs.687951 NM_001076680 ENSG00000232859 LYRM9 C17orf108|HSD24 LYR motif containing 9 protein-coding 184.667-35 chr3 193649370 193649601 + 1 NA intron (NM_130831, intron 18 of 27) intron (NM_130831, intron 18 of 27) -22153 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 154.167-2 chr1 42548798 42548994 + 1 NA intron (NM_001355227, intron 9 of 18) intron (NM_001355227, intron 9 of 18) 15876 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 217.5-42 chr6 35258390 35258625 + 1 NA Intergenic Intergenic -1228 NM_001292032 7629 Hs.388024 NM_003427 ENSG00000065029 ZNF76 D6S229E|ZNF523|Zfp523 zinc finger protein 76 protein-coding 293.333 chr11 121404314 121404742 + 1 NA Intergenic L1MEc|LINE|L1 -47786 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 319.833-2 chr10 93372432 93372895 + 1 NA intron (NM_013451, intron 24 of 53) intron (NM_013451, intron 24 of 53) 109671 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 167.833-18 chr15 58689982 58690239 + 1 NA TTS (NR_073415) TTS (NR_073415) 3497 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 156.5-39 chr18 460074 460573 + 1 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 40378 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 157.5-13 chr12 120065794 120065971 + 1 NA intron (NM_001367886, intron 4 of 9) intron (NM_001367886, intron 4 of 9) 50871 NM_006861 11021 Hs.524788 NM_006861 ENSG00000111737 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 259.333-12 chr20 58727874 58728191 + 1 NA Intergenic L1MEf|LINE|L1 35232 NM_024663 79716 Hs.654868 NM_024663 ENSG00000215440 NPEPL1 bA261P9.2 aminopeptidase like 1 protein-coding 175.667-8 chr1 232155208 232155470 + 1 NA Intergenic L1PA7|LINE|L1 229505 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 285.333-9 chr3 28143538 28143919 + 1 NA Intergenic L1MEh|LINE|L1 -97891 NR_138585 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 250.667 chr1 245059793 245060098 + 1 NA intron (NM_032328, intron 4 of 7) intron (NM_032328, intron 4 of 7) -89076 NR_111907 101928068 Hs.134857 NR_111907 LOC101928068 - uncharacterized LOC101928068 ncRNA 207.667-43 chr6 52240937 52241627 + 1 NA intron (NM_052872, intron 1 of 2) AluSz|SINE|Alu 3218 NM_052872 112744 Hs.272295 NM_052872 ENSG00000112116 IL17F CANDF6|IL-17F|ML-1|ML1 interleukin 17F protein-coding 182.333-30 chr2 41663502 41663862 + 1 NA Intergenic Intergenic -213873 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 312.667-3 chr14 68491894 68492468 + 1 NA intron (NM_001321818, intron 10 of 10) L2a|LINE|L2 136606 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 241.667-29 chr5 4358521 4358824 + 1 NA Intergenic Intergenic -414809 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 204.667-40 chr6 154197473 154197716 + 1 NA intron (NM_015553, intron 10 of 11) intron (NM_015553, intron 10 of 11) 107832 NM_001285527 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 181.833-33 chr3 83645810 83646077 + 1 NA Intergenic Intergenic 1223632 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 223.167-8 chr5 64306029 64306278 + 1 NA intron (NM_001113561, intron 5 of 7) intron (NM_001113561, intron 5 of 7) 140310 NM_001323292 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 129.167-28 chr15 91083307 91083618 + 1 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -16126 NM_001323031 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 210.5-35 chr4 66372401 66372712 + 1 NA Intergenic Intergenic 95732 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 154.5-20 chr12 118257190 118257420 + 1 NA intron (NM_001346490, intron 2 of 21) intron (NM_001346490, intron 2 of 21) -66770 NM_001346495 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 189.333-25 chr2 83547343 83547736 + 1 NA Intergenic Intergenic 24725 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 325.833-2 chr12 23384534 23385052 + 1 NA Intergenic Intergenic 199793 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 275.5-6 chr2 54657543 54658092 + 1 NA intron (NM_178313, intron 28 of 30) intron (NM_178313, intron 28 of 30) -67195 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 240.333-9 chr12 2331286 2331650 + 1 NA intron (NM_199460, intron 3 of 49).2 L1MC4|LINE|L1 61692 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 329.833 chr10 26152798 26153656 + 1 NA intron (NM_017433, intron 23 of 34) MIRb|SINE|MIR -63080 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 189.167-8 chr10 117328120 117328681 + 1 NA intron (NM_173791, intron 2 of 4) MER99|DNA|hAT? 47040 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 163.5-21 chr14 29273896 29274103 + 1 NA Intergenic Intergenic -488212 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 165.5-13 chr12 55784681 55785103 + 1 NA intron (NM_033082, intron 9 of 10) intron (NM_033082, intron 9 of 10) 32832 NM_033082 84324 Hs.505676 NM_033082 ENSG00000205323 SARNP CIP29|HCC1|HSPC316|THO1 SAP domain containing ribonucleoprotein protein-coding 128.5-51 chr3 29770369 29770544 + 1 NA intron (NM_001003792, intron 6 of 13) intron (NM_001003792, intron 6 of 13) 163700 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 188.333-45 chr4 110969339 110969587 + 1 NA Intergenic AluJr4|SINE|Alu -108816 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 290.167 chr1 112123520 112123843 + 1 NA Intergenic L1M6|LINE|L1 133145 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 135.833-9 chr12 44794118 44794479 + 1 NA intron (NM_006159, intron 4 of 20) MIR|SINE|MIR 81363 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 299.667-4 chr15 60579557 60580127 + 1 NA intron (NM_134260, intron 1 of 11) intron (NM_134260, intron 1 of 11) 12684 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 199.833-29 chr7 43654603 43654841 + 1 NA intron (NM_001321205, intron 1 of 3) intron (NM_001321205, intron 1 of 3) 71614 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 315.667-5 chr17 44418712 44419238 + 1 NA intron (NM_001002909, intron 6 of 7) intron (NM_001002909, intron 6 of 7) 17876 NM_001304943 23131 Hs.463129 NM_001002909 ENSG00000186566 GPATCH8 GPATC8|KIAA0553 G-patch domain containing 8 protein-coding 132.667-14 chr10 89517746 89517912 + 1 NA intron (NM_213606, intron 2 of 7) intron (NM_213606, intron 2 of 7) 17765 NM_213606 387700 Hs.530338 NM_213606 ENSG00000152779 SLC16A12 CJMG|CRT2|CTRCT47|MCT12 solute carrier family 16 member 12 protein-coding 218.667-12 chr12 26361872 26362450 + 1 NA intron (NM_002223, intron 55 of 56) intron (NM_002223, intron 55 of 56) 166588 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 215.333-38 chr5 61411491 61411937 + 1 NA intron (NM_020928, intron 1 of 13) MLT1A0|LTR|ERVL-MaLR 79456 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 263.667-6 chr14 32951030 32951505 + 1 NA intron (NM_001165893, intron 1 of 10) intron (NM_001165893, intron 1 of 10) 12388 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 125.333-99 chr5 146690575 146690818 + 1 NA intron (NM_181678, intron 6 of 10) MIRb|SINE|MIR -174583 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 157.5-36 chr2 203907247 203907478 + 1 NA Intergenic MLT2B1|LTR|ERVL -29386 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 249.333-20 chr5 22904899 22905344 + 1 NA Intergenic L1MB7|LINE|L1 -51777 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 228.333-23 chr4 166829381 166829817 + 1 NA intron (NM_001040159, intron 6 of 10) intron (NM_001040159, intron 6 of 10) 404827 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 203.667-30 chr6 37434530 37434864 + 1 NA intron (NM_015050, intron 1 of 23) AluSx|SINE|Alu 1476 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 163.5-17 chr12 57866501 57866808 + 1 NA Intergenic L1MD3|LINE|L1 -19925 NM_005730 10106 Hs.524530 NM_005730 ENSG00000175215 CTDSP2 OS4|PSR2|SCP2 CTD small phosphatase 2 protein-coding 190.667-11 chr12 45120986 45121347 + 1 NA Intergenic Intergenic -55755 NR_026583 83956 Hs.650500 NM_032032 RACGAP1P FKSG42 Rac GTPase activating protein 1 pseudogene pseudo 306.167 chr19 14684614 14685115 + 1 NA Intergenic Intergenic -5184 NM_001352241 84449 Hs.515215 NM_032433 ENSG00000160961 ZNF333 - zinc finger protein 333 protein-coding 132.667-15 chr11 11113309 11113509 + 1 NA Intergenic L1MEg|LINE|L1 239841 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 123.333-28 chr11 111260331 111260673 + 1 NA intron (NM_198498, intron 2 of 4) MLT1D|LTR|ERVL-MaLR 14777 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 150.5-79 chr8 105469753 105470017 + 1 NA intron (NM_001362837, intron 3 of 7) MIRb|SINE|MIR 150342 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 250.667-2 chr15 69666203 69666575 + 1 NA intron (NR_126437, intron 3 of 5) intron (NR_126437, intron 3 of 5) 74189 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 176.667-22 chr14 48767616 48767905 + 1 NA Intergenic Intergenic 818620 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 197.333-47 chr5 58278598 58278860 + 1 NA Intergenic Intergenic -156388 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 176.333-56 chr7 130718522 130718728 + 1 NA Intergenic AluSz|SINE|Alu 15408 NM_138693 136259 Hs.125240 NM_138693 ENSG00000266265 KLF14 BTEB5 Kruppel like factor 14 protein-coding 217.667-11 chr14 70181530 70181859 + 1 NA intron (NM_033262, intron 1 of 7) intron (NM_033262, intron 1 of 7) -5414 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 240.833-24 chr7 13244393 13244786 + 1 NA Intergenic MIR|SINE|MIR 556956 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 171.167-44 chr5 10175127 10175359 + 1 NA Intergenic HAL1|LINE|L1 74645 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 285.333-8 chr20 6096233 6096756 + 1 NA intron (NM_017671, intron 8 of 14) intron (NM_017671, intron 8 of 14) 27050 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 217.333-11 chr14 58876270 58876573 + 1 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 48133 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 172.333-13 chr10 83943386 83943579 + 1 NA Intergenic L2|LINE|L2 -196027 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 315.333-10 chr5 62461568 62462079 + 1 NA intron (NM_016338, intron 5 of 29) Tigger4a|DNA|TcMar-Tigger 42939 NM_001134779 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 252.833-5 chr14 57125042 57125411 + 1 NA Intergenic Intergenic 143679 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 175.667-74 chr8 126735060 126735328 + 1 NA Intergenic Intergenic -176716 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 243.167-12 chr4 108915991 108916410 + 1 NA intron (NM_198721, intron 12 of 36) intron (NM_198721, intron 12 of 36) -153147 NM_001331033 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 222.333-13 chr15 65154978 65155260 + 1 NA intron (NM_006660, intron 10 of 13) intron (NM_006660, intron 10 of 13) -21311 NM_005707 10081 Hs.458596 NM_005707 ENSG00000090470 PDCD7 ES18|HES18 programmed cell death 7 protein-coding 206.5-36 chr7 97648433 97648666 + 1 NA Intergenic L1MEd|LINE|L1 -83537 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 254.667-26 chr5 133155089 133155379 + 1 NA Intergenic L1ME3G|LINE|L1 103221 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 175.5-16 chr12 94987050 94987365 + 1 NA intron (NM_001258338, intron 2 of 2) L1MC4|LINE|L1 16490 NM_018838 55967 Hs.506374 NM_018838 ENSG00000184752 NDUFA12 B17.2|DAP13|MC1DN23 NADH:ubiquinone oxidoreductase subunit A12 protein-coding 192.833-6 chr1 200512011 200512306 + 1 NA Intergenic Intergenic -102122 NM_012482 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 123.167-47 chr2 53360721 53360858 + 1 NA Intergenic L1MB7|LINE|L1 -406994 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 249.333-28 chr8 126113650 126114074 + 1 NA Intergenic Intergenic -162665 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 249.167-5 chr15 54139866 54140202 + 1 NA intron (NM_001329919, intron 2 of 31) L1M5|LINE|L1 127386 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 227.833-18 chr5 21070156 21070401 + 1 NA Intergenic MER72|LTR|ERV1 -389202 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 114.667-15 chr11 132306794 132306985 + 1 NA intron (NM_016522, intron 3 of 6) intron (NM_016522, intron 3 of 6) 22587 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 208.5-13 chr14 70910389 70910722 + 1 NA intron (NM_014982, intron 1 of 35) L2a|LINE|L2 3096 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 196.5-33 chr6 133735375 133735675 + 1 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -85622 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 181.5-52 chr6 84465279 84465550 + 1 NA intron (NR_132100, intron 2 of 4) intron (NR_132100, intron 2 of 4) 9515 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 240.667-21 chr2 132805257 132805571 + 1 NA intron (NM_207481, intron 11 of 17) intron (NM_207481, intron 11 of 17) -110143 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 209.167-24 chr4 38248674 38249235 + 1 NA Intergenic L1ME1|LINE|L1 -117960 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 234.333-21 chr3 110760597 110760977 + 1 NA Intergenic L1MA8|LINE|L1 309172 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 238.5-24 chr4 80746723 80747087 + 1 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -283803 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 228.5-10 chr16 82449391 82449698 + 1 NA Intergenic (GAAT)n|Simple_repeat|Simple_repeat -177425 NM_001220488 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 152.667-78 chr7 19127133 19127287 + 1 NA Intergenic Intergenic -9574 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 228.333-32 chr6 69712754 69713055 + 1 NA intron (NM_001367272, intron 9 of 15) L1MA10|LINE|L1 83562 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 160.333-23 chr18 10075258 10075464 + 1 NA Intergenic Charlie5|DNA|hAT-Charlie 161345 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 133.667-41 chr17 56799619 56799810 + 1 NA intron (NM_001085430, intron 6 of 7) L1MC1|LINE|L1 34206 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 222.333-27 chr5 64352765 64353011 + 1 NA intron (NM_001113561, intron 7 of 7) intron (NM_001113561, intron 7 of 7) -153127 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 179.167-6 chr10 55302312 55302745 + 1 NA intron (NM_001354404, intron 2 of 34) MLT2D|LTR|ERVL -296514 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 218.667-11 chr12 23784864 23785110 + 1 NA intron (NM_152989, intron 6 of 17) AluJo|SINE|Alu 164683 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 197.667-15 chr12 123180161 123180371 + 1 NA intron (NR_103517, intron 14 of 23) intron (NR_103517, intron 14 of 23) 52875 NM_022782 10198 Hs.577404 NM_022782 ENSG00000051825 MPHOSPH9 MPP-9|MPP9 M-phase phosphoprotein 9 protein-coding 133.667-91 chr7 83727907 83728360 + 1 NA Intergenic Intergenic -78994 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 269.833-10 chr2 88074227 88074592 + 1 NA intron (NM_001330364, intron 1 of 8) MLT1D|LTR|ERVL-MaLR 6584 NM_001330364 150572 Hs.516176 NM_198274 ENSG00000115593 SMYD1 BOP|KMT3D|ZMYND18|ZMYND22 SET and MYND domain containing 1 protein-coding 245.333-11 chr20 34795083 34795475 + 1 NA intron (NM_014071, intron 1 of 14) L1MC5a|LINE|L1 -12875 NM_001242539 23054 Hs.368971 NM_014071 ENSG00000198646 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 158.833-50 chr5 28763339 28763696 + 1 NA Intergenic MER3|DNA|hAT-Charlie -163353 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 134.167-9 chr10 17806712 17806958 + 1 NA Intergenic MER47A|DNA|TcMar-Tigger -2513 NM_002438 4360 Hs.75182 NM_002438 ENSG00000260314 MRC1 CD206|CLEC13D|CLEC13DL|MMR|MRC1L1|bA541I19.1|hMR mannose receptor C-type 1 protein-coding 187.667-45 chr6 66204541 66204772 + 1 NA Intergenic Intergenic 416777 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 176.5-11 chr11 66748146 66748422 + 1 NA intron (NM_001302084, intron 1 of 14) intron (NM_001302084, intron 1 of 14) 3515 NM_001302084 79703 Hs.292088 NM_024650 ENSG00000173715 C11orf80 HYDM4|TOP6BL|TOPOVIBL chromosome 11 open reading frame 80 protein-coding 281.667-8 chr14 30615797 30616231 + 1 NA intron (NM_017769, intron 14 of 14) intron (NM_017769, intron 14 of 14) -6240 NM_001283033 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 148.5-49 chr3 89245596 89245866 + 1 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 138110 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 272.333-18 chr5 83960224 83960713 + 1 NA intron (NM_001278642, intron 9 of 9) L1MA4|LINE|L1 -239613 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 198.667-45 chr5 3562259 3562467 + 1 NA Intergenic L1MA4A|LINE|L1 -26269 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 148.5-38 chr2 68147471 68147662 + 1 NA exon (NM_001256476, exon 2 of 7) exon (NM_001256476, exon 2 of 7) 9961 NM_001256476 116143 Hs.631877 NM_138458 ENSG00000243667 WDR92 - WD repeat domain 92 protein-coding 234.667-7 chr10 62446035 62446416 + 1 NA intron (NM_199451, intron 3 of 7) intron (NM_199451, intron 3 of 7) -71098 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 218.667-45 chr8 25110513 25110810 + 1 NA Intergenic (GTTT)n|Simple_repeat|Simple_repeat -74028 NM_001322810 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 244.333-9 chr14 58296061 58296425 + 1 NA intron (NR_029435, intron 1 of 3) intron (NR_029435, intron 1 of 3) 1894 NR_029434 379025 Hs.531089 NR_029434 ENSG00000257621 PSMA3-AS1 - PSMA3 antisense RNA 1 ncRNA 155.333-43 chr2 28975366 28975591 + 1 NA Intergenic L1MDa|LINE|L1 -5820 NM_001321539 165186 Hs.525977 NM_199280 ENSG00000189350 TOGARAM2 FAM179A TOG array regulator of axonemal microtubules 2 protein-coding 164.333-83 chr8 81828264 81828470 + 1 NA intron (NR_145475, intron 3 of 6) L1M5|LINE|L1 13818 NM_152836 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 174.5-27 chr3 190143017 190143324 + 1 NA intron (NR_126419, intron 2 of 3) intron (NR_126419, intron 2 of 3) -20733 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 185.667-4 chr1 216220719 216221081 + 1 NA intron (NM_206933, intron 14 of 71) intron (NM_206933, intron 14 of 71) 148435 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 210.5-52 chr9 118151327 118151839 + 1 NA Intergenic Intergenic 447180 NM_138557 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 213.333-27 chr3 35866299 35866562 + 1 NA Intergenic L1MB4|LINE|L1 121954 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 178.5-76 chr8 130091476 130091666 + 1 NA intron (NM_001362925, intron 25 of 29) L2b|LINE|L2 -6803 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 238.833-9 chr3 165174866 165175216 + 1 NA Intergenic AluSg|SINE|Alu 21343 NM_001318810 22865 Hs.101745 NM_014926 ENSG00000121871 SLITRK3 - SLIT and NTRK like family member 3 protein-coding 192.667-10 chr10 102209296 102209533 + 1 NA Intergenic AluSp|SINE|Alu -16885 NM_152310 83401 Hs.302130 NM_152310 ENSG00000119915 ELOVL3 CIG-30|CIG30 ELOVL fatty acid elongase 3 protein-coding 223.5-33 chr8 86773893 86774243 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL -30393 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 180.167-19 chr16 35484946 35485315 + 1 NA Intergenic L1PB4|LINE|L1 -4534 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 158.333-33 chr16 81930641 81930884 + 1 NA intron (NM_002661, intron 24 of 32) AluJb|SINE|Alu 80708 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 197.667-35 chr20 45633051 45633335 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -1909 NM_147198 259240 Hs.249828 NM_147198 ENSG00000180205 WFDC9 WAP9|dJ688G8.2 WAP four-disulfide core domain 9 protein-coding 229.333-25 chr4 59703802 59704248 + 1 NA Intergenic Intergenic 690452 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 137.333-29 chr14 86385129 86385386 + 1 NA Intergenic L1MA5|LINE|L1 450579 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 180.833-34 chr4 57960786 57961043 + 1 NA Intergenic Intergenic 535042 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 168.333-52 chr7 145886157 145886477 + 1 NA Intergenic Intergenic -887954 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 247.333-11 chr3 14855470 14855891 + 1 NA intron (NM_152536, intron 1 of 19) L1MA5A|LINE|L1 36718 NM_152536 152273 Hs.412406 NM_152536 ENSG00000154783 FGD5 ZFYVE23 FYVE, RhoGEF and PH domain containing 5 protein-coding 223.5-20 chr3 165942553 165942810 + 1 NA Intergenic L1MB7|LINE|L1 -105258 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 207.333-15 chr12 118962044 118962398 + 1 NA Intergenic Intergenic -19320 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 138.333-30 chr14 63500171 63500349 + 1 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 7978 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 133.667-79 chr6 50657216 50657460 + 1 NA Intergenic Intergenic -56206 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 135.5-79 chr8 115937511 115937722 + 1 NA Intergenic Intergenic -268641 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 145.667-39 chr16 62529049 62529225 + 1 NA Intergenic Intergenic -492699 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 147.333-28 chr14 105063690 105063875 + 1 NA intron (NM_001278694, intron 1 of 4) intron (NM_001278694, intron 1 of 4) 1648 NM_001278695 29933 Hs.532504 NM_013345 ENSG00000183484 GPR132 G2A G protein-coupled receptor 132 protein-coding 240.667-35 chr5 135791875 135792283 + 1 NA intron (NM_001349335, intron 3 of 10) SATR2|Satellite|Satellite 10996 NR_049867 100847082 NR_049867 ENSG00000265924 MIR5692C1 - microRNA 5692c-1 ncRNA 141.667-21 chr13 61757618 61758014 + 1 NA Intergenic L1PA16|LINE|L1 271732 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 173.5-33 chr22 27228695 27228923 + 1 NA Intergenic MIR|SINE|MIR -4130 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 259.333-14 chr4 53413258 53413703 + 1 NA intron (NM_001134938, intron 8 of 14) L1MC4|LINE|L1 35827 NM_001134937 81608 Hs.555109 NM_030917 ENSG00000145216 FIP1L1 FIP1|Rhe|hFip1 factor interacting with PAPOLA and CPSF1 protein-coding 186.667-63 chr4 147162154 147162559 + 1 NA Intergenic Intergenic 182361 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 138.667-49 chr2 215645829 215646058 + 1 NA intron (NR_037195, intron 5 of 9) L1MEi|LINE|L1 -72100 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 220.333-20 chr3 122728289 122728770 + 1 NA exon (NM_017554, exon 17 of 17) exon (NM_017554, exon 17 of 17) 47690 NM_017554 54625 Hs.518203 NM_017554 ENSG00000173193 PARP14 ARTD8|BAL2|PARP-14|pART8 poly(ADP-ribose) polymerase family member 14 protein-coding 461.667 chr13 77745652 77746424 + 1 NA intron (NM_001242871, intron 2 of 5) intron (NM_001242871, intron 2 of 5) 4819 NM_001242870 122060 Hs.349955 NM_144595 ENSG00000139737 SLAIN1 C13orf32 SLAIN motif family member 1 protein-coding 274.5-18 chr8 63599111 63599704 + 1 NA Intergenic Intergenic 133558 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 247.333-4 chr11 82126797 82127184 + 1 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) -236154 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 212.333-19 chr2 79733149 79733475 + 1 NA intron (NM_001282598, intron 2 of 17) Charlie7|DNA|hAT-Charlie -83953 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 191.333-41 chr8 135287497 135287701 + 1 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 53468 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 228.667-26 chr21 27103158 27103641 + 1 NA Intergenic Intergenic -136311 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 194.167-41 chr8 121515839 121516205 + 1 NA Intergenic L1MCa|LINE|L1 -123324 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 144.5-80 chr6 44635504 44635720 + 1 NA Intergenic L1MC1|LINE|L1 -83731 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 197.333-4 chr10 66983983 66984307 + 1 NA non-coding (NR_111911, exon 2 of 7) non-coding (NR_111911, exon 2 of 7) 28008 NR_111911 101928961 Hs.687014 NR_111911 LOC101928961 - uncharacterized LOC101928961 ncRNA 290.667-3 chr13 82145881 82146415 + 1 NA Intergenic Intergenic -919165 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 129.333-74 chr5 161916748 161916921 + 1 NA intron (NR_126372, intron 2 of 2) intron (NR_126372, intron 2 of 2) 66109 NM_001127648 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 252.667-9 chr16 64778058 64778398 + 1 NA Intergenic Intergenic 343835 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 296.667-15 chr7 2569970 2570394 + 1 NA intron (NM_152558, intron 3 of 21) intron (NM_152558, intron 3 of 21) 11203 NM_001287502 23288 Hs.520627 NM_152558 ENSG00000106012 IQCE 1700028P05Rik|PAPA7 IQ motif containing E protein-coding 225.333-26 chr7 2437242 2437509 + 1 NA 3' UTR (NM_018641, exon 2 of 2) 3' UTR (NM_018641, exon 2 of 2) 33764 NM_001243795 55501 Hs.288853 NM_018641 ENSG00000136213 CHST12 C4S-2|C4ST-2|C4ST2 carbohydrate sulfotransferase 12 protein-coding 276.333-5 chr11 20432669 20433081 + 1 NA intron (NM_005788, intron 10 of 15) L1MA9|LINE|L1 45159 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 209.333-39 chr5 42175591 42176123 + 1 NA promoter-TSS (NR_104635) promoter-TSS (NR_104635) -512 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 185.667-13 chr13 26904133 26904390 + 1 NA Intergenic Intergenic -143475 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 257.333-8 chr15 97093725 97094070 + 1 NA Intergenic Intergenic 310462 NR_158223 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 235.5-28 chr3 186697124 186697498 + 1 NA Intergenic Intergenic -20048 NM_001102416 3827 Hs.77741 NM_000893 ENSG00000113889 KNG1 BDK|BK|HMWK|KNG kininogen 1 protein-coding 148.667-55 chr4 118157947 118158115 + 1 NA intron (NM_004784, intron 6 of 13) L1MC5a|LINE|L1 -120731 NR_034010 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 251.833-8 chr6 45598853 45599402 + 1 NA Intergenic Intergenic 176852 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 227.5-17 chr2 102959103 102959468 + 1 NA Intergenic Intergenic 25144 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 217.667-14 chr16 35760546 35760847 + 1 NA Intergenic ALR/Alpha|Satellite|centr 14144 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 177.333-61 chr7 137300835 137301144 + 1 NA intron (NM_001321387, intron 1 of 4) intron (NM_001321387, intron 1 of 4) -32134 NM_001321386 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 208.5-29 chr3 32637721 32638027 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -47314 NM_001256741 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 174.333-73 chr8 125441974 125442342 + 1 NA Intergenic MIRb|SINE|MIR 9949 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 205.333-45 chr4 151481990 151482493 + 1 NA intron (NM_001109977, intron 2 of 13) intron (NM_001109977, intron 2 of 13) 73065 NM_001348694 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 129.5-2 chr1 59163254 59163461 + 1 NA Intergenic Intergenic -16550 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 113.167-49 chr3 43489724 43489953 + 1 NA intron (NM_001346464, intron 12 of 13) intron (NM_001346464, intron 12 of 13) 132088 NM_001346466 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 167.167-28 chr15 60229432 60229779 + 1 NA Intergenic MER34D|LTR|ERV1 168381 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 293.333-11 chr4 32887011 32887306 + 1 NA Intergenic Intergenic 536120 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 314.667-4 chr2 37987614 37988098 + 1 NA intron (NM_001170793, intron 4 of 9) AluSx|SINE|Alu 37392 NM_144713 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 122.333-10 chr10 56977572 56977761 + 1 NA Intergenic Intergenic 326893 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 287.5-2 chr10 56897989 56898468 + 1 NA Intergenic MER61D|LTR|ERV1 406331 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 238.333-6 chr11 39575351 39575880 + 1 NA Intergenic Intergenic 717515 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 169.5-18 chr13 112798671 112798982 + 1 NA intron (NM_032189, intron 2 of 28) L1MCa|LINE|L1 -44095 NR_046661 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 360.333-4 chr9 37628100 37628568 + 1 NA intron (NM_001371224, intron 2 of 16) intron (NM_001371224, intron 2 of 16) -22620 NM_014907 22844 Hs.163990 NM_014907 ENSG00000070601 FRMPD1 FRMD2 FERM and PDZ domain containing 1 protein-coding 246.333-15 chr20 58131178 58131472 + 1 NA Intergenic Intergenic -19577 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 178.667-12 chr13 46707054 46707307 + 1 NA intron (NM_001164213, intron 13 of 18) L1MC4|LINE|L1 89981 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 220.333-29 chr6 109373035 109373310 + 1 NA intron (NM_001142401, intron 3 of 4) intron (NM_001142401, intron 3 of 4) 8567 NM_001346500 8763 Hs.520313 NM_006016 ENSG00000135535 CD164 DFNA66|MGC-24|MGC-24v|MUC-24|endolyn CD164 molecule protein-coding 257.333-18 chr5 127960082 127960419 + 1 NA intron (NR_152813, intron 2 of 3) intron (NR_152813, intron 2 of 3) 122925 NR_152800 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 289.833 chr10 32579058 32579506 + 1 NA intron (NM_001321115, intron 17 of 43) intron (NM_001321115, intron 17 of 43) 133142 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 335.667-4 chr4 4520649 4521152 + 1 NA intron (NM_001346282, intron 1 of 10) intron (NM_001346282, intron 1 of 10) 21148 NR_144414 53407 Hs.584913 NM_016930 ENSG00000168818 STX18 Ufe1 syntaxin 18 protein-coding 225.5-40 chr5 41675193 41675495 + 1 NA Intergenic Zaphod|DNA|hAT-Tip100 -164743 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 210.5-44 chr7 4293445 4293718 + 1 NA Intergenic L1ME2|LINE|L1 -158744 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 169.667-29 chr16 78699890 78700151 + 1 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 600366 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 276.333-14 chr3 99159514 99159968 + 1 NA Intergenic MSTA-int|LTR|ERVL-MaLR -258046 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 121.5-26 chr12 10067037 10067252 + 1 NA Intergenic Intergenic 31841 NM_001297751 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 180.167-12 chr12 79293870 79294378 + 1 NA intron (NM_001291901, intron 5 of 9) intron (NM_001291901, intron 5 of 9) -125133 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 184.5-35 chr4 41773572 41773917 + 1 NA Intergenic AluJo|SINE|Alu -24774 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 203.333-48 chr8 58592267 58592533 + 1 NA intron (NM_001144772, intron 23 of 30) intron (NM_001144772, intron 23 of 30) 39139 NM_005625 6386 Hs.200804 NM_005625 ENSG00000137575 SDCBP MDA-9|MDA9|ST1|SYCL|TACIP18 syndecan binding protein protein-coding 165.667-4 chr1 155498160 155498366 + 1 NA intron (NM_018489, intron 2 of 27) L1MB3|LINE|L1 -63779 NR_147964 645676 Hs.568693 NR_027023 ENSG00000235919 ASH1L-AS1 - ASH1L antisense RNA 1 ncRNA 148.333-65 chr3 115406115 115406352 + 1 NA Intergenic MIRb|SINE|MIR -217277 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 259.333-6 chr14 26667624 26668029 + 1 NA intron (NR_147061, intron 2 of 6) intron (NR_147061, intron 2 of 6) 69179 NR_147061 102725045 Hs.143441 NR_147061 LINC02588 C14orf22|NOVA1-AS1 long intergenic non-protein coding RNA 2588 ncRNA 148.167-67 chr5 144862020 144862358 + 1 NA Intergenic L1MCa|LINE|L1 656798 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 224.167-5 chr10 70424595 70425031 + 1 NA 3' UTR (NM_004096, exon 3 of 3) 3' UTR (NM_004096, exon 3 of 3) 16868 NM_018055 4838 Hs.370414 NM_018055 ENSG00000156574 NODAL HTX5 nodal growth differentiation factor protein-coding 189.5-8 chr10 53229064 53229291 + 1 NA Intergenic L1MA4|LINE|L1 -457477 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 257.167-5 chr2 138286216 138286707 + 1 NA Intergenic Charlie2b|DNA|hAT-Charlie 184577 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 149.833-16 chr2 37307778 37308112 + 1 NA intron (NM_005813, intron 1 of 17) intron (NM_005813, intron 1 of 17) 9139 NM_005813 23683 Hs.660757 NM_005813 ENSG00000115825 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 237.667-21 chr8 131023982 131024449 + 1 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 16694 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 188.333-2 chr1 107268928 107269271 + 1 NA intron (NM_001113226, intron 1 of 6) L2a|LINE|L2 121030 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 116.333-54 chr2 214046610 214046942 + 1 NA intron (NR_047660, intron 12 of 14) L1MA3|LINE|L1 288709 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 217.5 chr1 43463529 43463952 + 1 NA Intergenic Intergenic -9751 NM_001190880 81888 Hs.709864 NM_031207 ENSG00000178922 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 200.333-22 chr20 33046518 33046836 + 1 NA Intergenic Intergenic -8654 NM_182658 359710 Hs.472442 NM_182658 ENSG00000186190 BPIFB3 C20orf185|LPLUNC3|RYA3 BPI fold containing family B member 3 protein-coding 170.5-3 chr1 64491741 64492012 + 1 NA intron (NM_020925, intron 1 of 26) AluJb|SINE|Alu -14038 NM_001293274 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 245.5-19 chr5 30967856 30968227 + 1 NA Intergenic LTR49-int|LTR|ERV1 -225645 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 117.333-65 chr22 27172524 27172736 + 1 NA Intergenic L1MC4a|LINE|L1 -14886 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 220.5-11 chr15 72444925 72445276 + 1 NA intron (NR_135678, intron 1 of 3) intron (NR_135678, intron 1 of 3) 29139 NR_135678 105370888 Hs.540241 NR_135678 ENSG00000261423 TMEM202-AS1 - TMEM202 antisense RNA 1 ncRNA 204.5-42 chr8 111112568 111112872 + 1 NA intron (NR_125418, intron 3 of 3) intron (NR_125418, intron 3 of 3) -85287 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 138.333-68 chr2 228708540 228708770 + 1 NA Intergenic Intergenic -97260 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 219.5-44 chr8 132337739 132338117 + 1 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 109334 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 115.833-35 chr2 153969245 153969382 + 1 NA intron (NM_052917, intron 3 of 12) intron (NM_052917, intron 3 of 12) 24919 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 185.333 chr1 7399747 7400074 + 1 NA intron (NM_001349608, intron 4 of 21) L1MA6|LINE|L1 -10156 NR_146199 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 171.5-12 chr12 39723218 39723464 + 1 NA intron (NR_135051, intron 12 of 18) MER77B|LTR|ERVL 97158 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 226.5-27 chr5 88807859 88808170 + 1 NA intron (NM_001131005, intron 3 of 10) intron (NM_001131005, intron 3 of 10) 15913 NM_001193348 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 203.333-51 chr8 88809329 88809558 + 1 NA Intergenic Intergenic -481960 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 184.5-27 chr2 106692989 106693296 + 1 NA Intergenic L1MA7|LINE|L1 192886 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 127.333-73 chr3 4560935 4561168 + 1 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 67703 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 166.167-12 chr14 63700208 63700391 + 1 NA intron (NM_030791, intron 1 of 2).2 L2|LINE|L2 27766 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 175.5-12 chr10 101503676 101503932 + 1 NA intron (NM_001256856, intron 3 of 13) intron (NM_001256856, intron 3 of 13) 84453 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 287.5-7 chr17 51287205 51287597 + 1 NA intron (NM_016001, intron 10 of 13) L2|LINE|L2 26855 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18 small subunit processome component protein-coding 183.333-9 chr10 75187324 75187584 + 1 NA Intergenic Intergenic -22700 NM_001184823 7417 Hs.355927 NM_003375 ENSG00000165637 VDAC2 POR voltage dependent anion channel 2 protein-coding 175.333-39 chr3 89276621 89276920 + 1 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 169149 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 328.5-6 chr4 34954570 34955163 + 1 NA Intergenic Intergenic -685119 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 128.5-26 chr15 88129353 88129599 + 1 NA intron (NM_001007156, intron 10 of 15) MIRb|SINE|MIR 76498 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 211.667-32 chr5 144641133 144641489 + 1 NA Intergenic L1MD2|LINE|L1 435920 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 334.5-11 chr7 53094760 53095342 + 1 NA Intergenic Intergenic 59418 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 220.333-13 chr2 6176977 6177408 + 1 NA Intergenic Tigger3a|DNA|TcMar-Tigger 195214 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 206.667-42 chr6 56128428 56128792 + 1 NA intron (NM_030820, intron 12 of 29) HAL1|LINE|L1 -36948 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 140.333-85 chr8 83412610 83412800 + 1 NA Intergenic Intergenic 8947 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 175.667-26 chr18 69370109 69370351 + 1 NA Intergenic Intergenic -30658 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 162.5-43 chr22 27297898 27298247 + 1 NA Intergenic Intergenic -12579 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 150.333-30 chr12 32854529 32854696 + 1 NA intron (NM_001005242, intron 4 of 12) intron (NM_001005242, intron 4 of 12) 42234 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 157.5-6 chr10 81686755 81687129 + 1 NA Intergenic HAL1M8|LINE|L1 -188252 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 132.5-38 chr18 1600638 1600836 + 1 NA Intergenic Intergenic -241108 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 161.833-17 chr17 60944501 60944794 + 1 NA intron (NM_001330413, intron 13 of 25) L1MEf|LINE|L1 266796 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 194.5-27 chr4 88516747 88517185 + 1 NA Intergenic Intergenic 6810 NM_032906 100996939 Hs.26136 NM_032906 ENSG00000145337 PYURF PREY PIGY upstream reading frame protein-coding 166.667-29 chr20 63639156 63639513 + 1 NA TTS (NM_001276310) TTS (NM_001276310) 12099 NR_132417 100505771 Hs.448392 NR_132417 ENSG00000232442 MHENCR - melanoma highly expressed competing endogenous lncRNA for miR-425 and miR-489 ncRNA 319.167-2 chr10 55103080 55103532 + 1 NA intron (NM_001354404, intron 3 of 34) Tigger2|DNA|TcMar-Tigger -302015 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 234.167 chr1 39929759 39930045 + 1 NA Intergenic AluJb|SINE|Alu -25210 NM_001287808 84879 Hs.655177 NM_032793 ENSG00000168389 MFSD2A MCPH15|MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 219.833-15 chr4 6983449 6983862 + 1 NA intron (NM_020773, intron 3 of 13) intron (NM_020773, intron 3 of 13) -3554 NM_001113363 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 203.333-11 chr15 48501596 48501947 + 1 NA intron (NM_000138, intron 17 of 65) intron (NM_000138, intron 17 of 65) 144017 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 223.833-27 chr8 136356734 136357116 + 1 NA Intergenic L1MEc|LINE|L1 -173873 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 227.333-24 chr3 99217977 99218419 + 1 NA Intergenic Intergenic -316503 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 219.5-41 chr7 48268937 48269434 + 1 NA intron (NM_152701, intron 16 of 61) intron (NM_152701, intron 16 of 61) 97727 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 151.5-29 chr18 4290021 4290226 + 1 NA intron (NR_036489, intron 2 of 2) intron (NR_036489, intron 2 of 2) 25521 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 176.5-55 chr5 19082601 19082880 + 1 NA Intergenic Intergenic 803532 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 250.333-10 chr15 49997145 49997500 + 1 NA intron (NR_073597, intron 8 of 26) intron (NR_073597, intron 8 of 26) 116057 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 134.833-11 chr11 127916339 127916665 + 1 NA Intergenic L1PA8A|LINE|L1 -292264 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 122.167-22 chr14 71688261 71688605 + 1 NA intron (NM_001354286, intron 14 of 24) intron (NM_001354286, intron 14 of 24) 102135 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 178.667-22 chr18 11103084 11103349 + 1 NA intron (NM_022068, intron 1 of 51) intron (NM_022068, intron 1 of 51) 45546 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 170.167-4 chr10 56087493 56087793 + 1 NA Intergenic Intergenic 273616 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 253.5-6 chr10 90400160 90400760 + 1 NA Intergenic Intergenic 140345 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 246.5-11 chr17 67720633 67721188 + 1 NA intron (NM_001303272, intron 3 of 16) intron (NM_001303272, intron 3 of 16) 2974 NM_015462 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 379.333 chr10 87844966 87845584 + 1 NA non-coding (NR_028492, exon 4 of 4) non-coding (NR_028492, exon 4 of 4) 18162 NM_001126049 100144748 Hs.559820 NM_001126049 ENSG00000227268 KLLN CWS4|KILLIN killin, p53 regulated DNA replication inhibitor protein-coding 152.5-28 chr2 176405795 176406030 + 1 NA Intergenic Intergenic 136470 NM_001006635 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 183.5-25 chr17 66356164 66356513 + 1 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 53725 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 133.333-60 chr2 210978517 210978737 + 1 NA Intergenic Intergenic 361056 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 186.333-51 chr6 134837019 134837367 + 1 NA Intergenic Intergenic 112908 NM_001193480 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 113.5-58 chr21 30527485 30527656 + 1 NA Intergenic Intergenic 14294 NM_181612 337973 Hs.553695 NM_181612 ENSG00000186925 KRTAP19-6 KAP19.6 keratin associated protein 19-6 protein-coding 263.5-11 chr18 59656960 59657361 + 1 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 40263 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 264.167-12 chr2 26776124 26776518 + 1 NA intron (NM_017877, intron 4 of 5) intron (NM_017877, intron 4 of 5) -9694 NM_001042426 1058 Hs.1594 NM_001809 ENSG00000115163 CENPA CENP-A|CenH3 centromere protein A protein-coding 209.333-41 chr5 77005591 77005939 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -24639 NM_018046 55109 Hs.634849 NM_018046 ENSG00000164252 AGGF1 GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q angiogenic factor with G-patch and FHA domains 1 protein-coding 144.667-7 chr1 177333025 177333384 + 1 NA Intergenic Intergenic -18382 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 356.667-7 chr9 5353028 5353466 + 1 NA Intergenic Intergenic -13371 NM_006911 6013 Hs.368996 NM_006911 ENSG00000107018 RLN1 H1|H1RLX|RLXH1|bA12D24.3.1|bA12D24.3.2 relaxin 1 protein-coding 157.333-66 chr6 106300775 106300957 + 1 NA intron (NR_104403, intron 1 of 4) intron (NR_104403, intron 1 of 4) 15400 NR_104402 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 160.667-14 chr10 10502206 10502438 + 1 NA intron (NM_001326317, intron 1 of 14) L1MD1|LINE|L1 39772 NM_001326319 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 302.167 chr11 86580485 86580918 + 1 NA intron (NM_001014811, intron 1 of 13) MIRb|SINE|MIR 91497 NR_147831 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 203.833-14 chr2 107547847 107548189 + 1 NA intron (NR_146968, intron 2 of 2) intron (NR_146968, intron 2 of 2) 18599 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 142.667-19 chr11 111538571 111538807 + 1 NA Intergenic Intergenic -1591 NM_001318799 143903 Hs.503831 NM_178834 ENSG00000204381 LAYN - layilin protein-coding 136.667-23 chr14 43778637 43778806 + 1 NA Intergenic Intergenic 728562 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 485.333 chr2 111040900 111041490 + 1 NA intron (NM_001371254, intron 16 of 18) intron (NM_001371254, intron 16 of 18) 74393 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 193.5-55 chr8 137233823 137234137 + 1 NA Intergenic Intergenic 179608 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 294.5-11 chr4 127016332 127016948 + 1 NA Intergenic Intergenic -616317 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 150.833-30 chr3 180480449 180480698 + 1 NA Intergenic Intergenic 66400 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 135.167-12 chr10 43656714 43657123 + 1 NA intron (NR_038867, intron 1 of 4) intron (NR_038867, intron 1 of 4) -8037 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 221.667-6 chr10 25136372 25136675 + 1 NA intron (NR_120649, intron 6 of 7) L2a|LINE|L2 23465 NR_120649 101929025 Hs.553324 NR_120649 ENSG00000231422 LINC01516 - long intergenic non-protein coding RNA 1516 ncRNA 239.667-33 chr9 25511128 25511403 + 1 NA Intergenic L1M4c|LINE|L1 167593 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 137.833-35 chr5 56417601 56417792 + 1 NA Intergenic Intergenic 64073 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 187.333-25 chr18 26281297 26281533 + 1 NA intron (NM_005640, intron 5 of 14) intron (NM_005640, intron 5 of 14) 54970 NM_001293725 6875 Hs.369519 NM_005640 ENSG00000141384 TAF4B SPGF13|TAF2C2|TAFII105 TATA-box binding protein associated factor 4b protein-coding 125.333-70 chr20 52567159 52567372 + 1 NA Intergenic Intergenic -53573 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 168.5-73 chr9 137911026 137911237 + 1 NA intron (NM_001243812, intron 3 of 45) L1MB4|LINE|L1 -18561 NR_121583 100133077 Hs.640081 NR_121583 ENSG00000203987 LOC100133077 - uncharacterized LOC100133077 ncRNA 175.834-3 chr18 4861930 4862565 + 1 NA Intergenic HAL1|LINE|L1 -218935 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 374.167-4 chr4 45444269 45444773 + 1 NA Intergenic Intergenic 679533 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 120.333-46 chr16 10548220 10548388 + 1 NA intron (NM_001424, intron 1 of 4) Tigger18a|DNA|TcMar-Tigger -20106 NR_149081 106144584 Hs.531561 NR_149081 ENSG00000260468 LINC01290 - long intergenic non-protein coding RNA 1290 ncRNA 116.667-91 chr5 157720314 157720484 + 1 NA Intergenic HUERS-P3b-int|LTR|ERV1 -11021 NM_017872 54974 Hs.353090 NM_017872 ENSG00000113272 THG1L ICF45|IHG-1|hTHG1 tRNA-histidine guanylyltransferase 1 like protein-coding 303.667-4 chr2 166899562 166900148 + 1 NA intron (NM_152381, intron 1 of 10) L1MDa|LINE|L1 11368 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 116.667-43 chr16 76498524 76498696 + 1 NA exon (NM_001322188, exon 15 of 25) exon (NM_001322188, exon 15 of 25) -136388 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 162.667-26 chr16 81143933 81144181 + 1 NA intron (NM_052892, intron 30 of 43) intron (NM_052892, intron 30 of 43) 37274 NM_001278425 114780 Hs.413525 NM_052892 ENSG00000166473 PKD1L2 PC1L2 polycystin 1 like 2 (gene/pseudogene) protein-coding 228.333-37 chr7 103610035 103610344 + 1 NA intron (NM_005045, intron 22 of 64) LTR81A|LTR|Gypsy -163982 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 391.667-3 chr22 43266199 43266666 + 1 NA intron (NM_173050, intron 4 of 21) intron (NM_173050, intron 4 of 21) -9510 NR_134582 101927447 Hs.621227 NR_134582 ENSG00000203527 LOC101927447 - uncharacterized LOC101927447 ncRNA 146.667-2 chr1 88497607 88497768 + 1 NA Intergenic Intergenic -186457 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 175.667-10 chr10 70872946 70873296 + 1 NA intron (NM_003901, intron 11 of 14) intron (NM_003901, intron 11 of 14) 14760 NM_001289797 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 146.333-57 chr21 33760426 33760634 + 1 NA intron (NM_001001132, intron 8 of 29) intron (NM_001001132, intron 8 of 29) 118029 NM_001331011 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 142.667-13 chr11 10039460 10039632 + 1 NA intron (NM_030962, intron 3 of 39) intron (NM_030962, intron 3 of 39) 200404 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 248.833-7 chr20 57546731 57547163 + 1 NA Intergenic Intergenic -14163 NM_002591 5105 Hs.1872 NM_002591 ENSG00000124253 PCK1 PCKDC|PEPCK-C|PEPCK1|PEPCKC phosphoenolpyruvate carboxykinase 1 protein-coding 217.333-38 chr8 75736254 75736605 + 1 NA Intergenic Intergenic 196461 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 167.667-75 chr5 127896720 127896938 + 1 NA intron (NM_001317938, intron 6 of 6) intron (NM_001317938, intron 6 of 6) 186346 NR_152800 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 187.5-37 chr4 59737654 59738098 + 1 NA Intergenic Intergenic 724303 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 178.5-37 chr18 5929034 5929304 + 1 NA Intergenic Intergenic -33215 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 234.333-4 chr10 7709463 7709782 + 1 NA intron (NM_002216, intron 4 of 20) L3|LINE|CR1 6306 NM_002216 3698 Hs.75285 NM_002216 ENSG00000151655 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 239.667-22 chr3 49851200 49851500 + 1 NA intron (NM_005879, intron 1 of 14) L1ME3A|LINE|L1 5214 NM_005879 10293 Hs.517972 NM_005879 ENSG00000183763 TRAIP RNF206|SCKL9|TRIP TRAF interacting protein protein-coding 180.667-51 chr3 140591070 140591468 + 1 NA Intergenic Intergenic -82480 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 164.667-29 chr16 72873230 72873524 + 1 NA intron (NM_001164766, intron 3 of 8) intron (NM_001164766, intron 3 of 8) 174751 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 185.667-60 chr8 134365465 134365796 + 1 NA Intergenic MLT1J1|LTR|ERVL-MaLR -232441 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 188.667-60 chr7 45094966 45095203 + 1 NA Intergenic L1MB8|LINE|L1 -6115 NM_001146334 23148 Hs.96633 NM_001146334 ENSG00000136274 NACAD - NAC alpha domain containing protein-coding 174.5-18 chr17 61981936 61982427 + 1 NA intron (NM_005121, intron 16 of 29) intron (NM_005121, intron 16 of 29) -54199 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 283.5-12 chr6 154356048 154356581 + 1 NA intron (NM_015553, intron 1 of 11) intron (NM_015553, intron 1 of 11) 452 NM_015553 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 243.5-13 chr2 49255107 49255371 + 1 NA Intergenic Intergenic -100712 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 318.5-4 chr16 6695967 6696518 + 1 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -77567 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 405.667 chr11 120939925 120940688 + 1 NA TTS (NR_133004) TTS (NR_133004) 17733 NR_133004 101929208 Hs.662310 NR_133004 LOC101929208 - uncharacterized LOC101929208 ncRNA 171.834-4 chr17 35287941 35288591 + 1 NA Intergenic Intergenic 45194 NM_144975 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 194.667-16 chr11 35584655 35584890 + 1 NA Intergenic Charlie29a|DNA|hAT-Charlie -33688 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 217.667-2 chr1 40461306 40461708 + 1 NA intron (NM_001369565, intron 5 of 5) intron (NM_001369565, intron 5 of 5) 11031 NM_023070 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 391.333 chr2 180823559 180824256 + 1 NA intron (NR_104324, intron 3 of 4) MLT2F|LTR|ERVL 131803 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 298.5-14 chr4 112852562 112853047 + 1 NA intron (NM_001354275, intron 1 of 43) intron (NM_001354275, intron 1 of 43) -8183 NM_001354267 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 120.333-51 chr19 44103244 44103495 + 1 NA intron (NM_013398, intron 5 of 5) intron (NM_013398, intron 5 of 5) 9008 NM_001321645 7767 Hs.585869 NM_013398 ENSG00000267680 ZNF224 BMZF-2|BMZF2|KOX22|ZNF233|ZNF255|ZNF27 zinc finger protein 224 protein-coding 202.333-17 chr15 65735850 65736079 + 1 NA intron (NM_005848, intron 7 of 31) AluSx|SINE|Alu -16632 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 148.833-59 chr8 16263651 16264094 + 1 NA Intergenic Intergenic -71081 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 188.5-30 chr2 104164328 104164637 + 1 NA Intergenic Intergenic 243850 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 157.5 chr1 51971140 51971316 + 1 NA intron (NM_002867, intron 2 of 4) intron (NM_002867, intron 2 of 4) 19472 NM_002867 5865 Hs.123072 NM_002867 ENSG00000169213 RAB3B - RAB3B, member RAS oncogene family protein-coding 136.667-4 chr1 117481020 117481443 + 1 NA intron (NM_006699, intron 8 of 12) intron (NM_006699, intron 8 of 12) 113782 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 339.667-8 chr8 132336473 132337118 + 1 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 110467 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 143.5-2 chr1 172227122 172227544 + 1 NA intron (NR_146559, intron 15 of 20) L1PB3|LINE|L1 -82498 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 183.667-24 chr14 58301302 58301643 + 1 NA intron (NM_002892, intron 2 of 23) intron (NM_002892, intron 2 of 23) 2917 NM_002892 5926 Hs.161000 NM_002892 ENSG00000032219 ARID4A RBBP-1|RBBP1|RBP-1|RBP1 AT-rich interaction domain 4A protein-coding 119.333-57 chr2 202802666 202802849 + 1 NA intron (NM_001288623, intron 9 of 12) L1MEd|LINE|L1 26477 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 210.5-15 chr14 29548595 29548926 + 1 NA Intergenic Intergenic 378336 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 291.333-7 chr3 107592875 107593206 + 1 NA intron (NM_001276286, intron 2 of 16) intron (NM_001276286, intron 2 of 16) 70078 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 265.5-6 chr16 70306735 70307159 + 1 NA intron (NM_001257175, intron 1 of 8) L1MB8|LINE|L1 7894 NM_001014451 11269 Hs.221761 NM_007242 ENSG00000157349 DDX19B DBP5|DDX19|RNAh DEAD-box helicase 19B protein-coding 133.5-34 chr2 84202558 84202838 + 1 NA Intergenic Intergenic -87984 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 115.5-105 chr9 3289930 3290131 + 1 NA intron (NM_134428, intron 7 of 17) intron (NM_134428, intron 7 of 17) 105566 NM_002919 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 146.333-100 chrX 111367638 111367928 + 1 NA intron (NM_178152, intron 3 of 6) intron (NM_178152, intron 3 of 6) 43363 NM_000555 1641 Hs.34780 NM_000555 ENSG00000077279 DCX DBCN|DC|LISX|SCLH|XLIS doublecortin protein-coding 133.333-58 chr2 101642817 101642968 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -54811 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 145.333-8 chr10 14267731 14268067 + 1 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 62985 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 184.333-63 chr8 84663337 84663619 + 1 NA intron (NM_001354308, intron 3 of 9) L1PA11|LINE|L1 -42449 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 195.167-37 chr8 34559786 34560216 + 1 NA Intergenic Intergenic -223920 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 184.667-47 chr7 28095489 28095734 + 1 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -84846 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 185.5-19 chr2 37716791 37717164 + 1 NA Intergenic L1ME2z|LINE|L1 -44442 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 210.667-17 chr16 53172633 53172962 + 1 NA intron (NM_001352127, intron 2 of 38) L1ME1|LINE|L1 16871 NM_001308319 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 244.833-6 chr2 17424680 17425147 + 1 NA Intergenic Intergenic 93527 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 184.667-50 chr8 100596271 100596594 + 1 NA intron (NM_152628, intron 10 of 13) intron (NM_152628, intron 10 of 13) 21973 NM_001363720 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 157.333-16 chr12 123617165 123617447 + 1 NA TTS (NR_145743) TTS (NR_145743) 596 NR_145743 109616977 NR_145743 ENSG00000206897 SNORA9B - small nucleolar RNA, H/ACA box 9B snoRNA 218.333-4 chr10 91395372 91395655 + 1 NA intron (NR_024467, intron 3 of 4) MamGypsy2-I|LTR|Gypsy -13722 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 184.5-18 chr16 5284674 5284890 + 1 NA Intergenic (T)n|Simple_repeat|Simple_repeat -186962 NM_201598 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 148.667-22 chr14 61302198 61302363 + 1 NA Intergenic LTR47A|LTR|ERVL -19163 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 238.667-29 chr5 175225046 175225669 + 1 NA Intergenic Intergenic 218825 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 234.333-32 chr8 35012111 35012640 + 1 NA Intergenic Intergenic -223100 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 229.667-21 chr2 184184170 184184485 + 1 NA Intergenic L1MA6|LINE|L1 -194648 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 170.667-46 chr4 45437603 45437874 + 1 NA Intergenic Intergenic 686316 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 114.333-111 chr6 134686655 134686807 + 1 NA Intergenic Intergenic -146726 NR_125856 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 309.5-10 chr7 97658383 97658758 + 1 NA Intergenic MLT1N2|LTR|ERVL-MaLR -73516 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 114.5-86 chr7 82318004 82318149 + 1 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 125701 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 245.667-3 chr10 92517387 92517925 + 1 NA intron (NR_136399, intron 4 of 25) intron (NR_136399, intron 4 of 25) -19895 NM_001165946 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 324.833-2 chr6 133214330 133214818 + 1 NA Intergenic Intergenic -26783 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 227.333-45 chr8 107073060 107073517 + 1 NA Intergenic Intergenic 263227 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 113.667-102 chr5 68349588 68349808 + 1 NA Intergenic MSTB|LTR|ERVL-MaLR 57121 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 316.333-10 chr7 33385912 33386389 + 1 NA intron (NM_198428, intron 18 of 22) intron (NM_198428, intron 18 of 22) 256586 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 148.667-2 chr1 104116451 104116667 + 1 NA Intergenic Intergenic 43536 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 174.667-17 chr14 22711663 22711908 + 1 NA Intergenic SATR1|Satellite|Satellite -54903 NM_005015 5018 Hs.151134 NM_005015 ENSG00000155463 OXA1L OXA1 OXA1L mitochondrial inner membrane protein protein-coding 195.833-30 chr8 53318317 53318616 + 1 NA Intergenic LTR9B|LTR|ERV1 -66769 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 193.333-42 chr4 181634285 181634541 + 1 NA Intergenic Intergenic 195560 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 134.833-41 chr3 192938105 192938444 + 1 NA Intergenic Intergenic -20418 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 131.833-45 chr3 37503989 37504324 + 1 NA intron (NM_002207, intron 6 of 27) intron (NM_002207, intron 6 of 27) 52015 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 196.667-58 chr9 31848400 31848726 + 1 NA Intergenic MER61A|LTR|ERV1 -467073 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 163.667-28 chr17 67505388 67505704 + 1 NA intron (NM_181671, intron 1 of 9) L1M4|LINE|L1 -33961 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 208.667-12 chr12 65216267 65216893 + 1 NA intron (NM_014319, intron 3 of 12) intron (NM_014319, intron 3 of 12) 46997 NM_014319 23592 Hs.744150 NM_014319 ENSG00000174106 LEMD3 MAN1 LEM domain containing 3 protein-coding 205.333-11 chr12 119721588 119722085 + 1 NA intron (NM_007174, intron 27 of 46) intron (NM_007174, intron 27 of 46) -8112 NR_031589 100302274 NR_031589 ENSG00000283768 MIR1178 MIRN1178|hsa-mir-1178 microRNA 1178 ncRNA 157.833-50 chr4 183096456 183096790 + 1 NA TTS (NR_024008) TTS (NR_024008) 2576 NR_024008 152641 Hs.745108 NM_153008 ENSG00000251359 WWC2-AS2 C4orf38 WWC2 antisense RNA 2 ncRNA 173.833 chr1 41217568 41217885 + 1 NA intron (NM_001172218, intron 1 of 15) MLT1C-int|LTR|ERVL-MaLR 24580 NM_012236 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 157.5-68 chr8 130707434 130707641 + 1 NA Intergenic MSTA-int|LTR|ERVL-MaLR -263863 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 200.667-28 chr19 40669697 40669926 + 1 NA intron (NM_001289979, intron 8 of 8) intron (NM_001289979, intron 8 of 8) 20353 NM_001289980 9253 Hs.326953 NM_004756 ENSG00000105245 NUMBL CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23 NUMB like endocytic adaptor protein protein-coding 166.667-54 chr7 29021185 29021451 + 1 NA intron (NM_001371256, intron 16 of 16) L1M5|LINE|L1 41351 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 173.333-40 chr3 33553853 33554061 + 1 NA intron (NM_001365634, intron 26 of 35) AluSq|SINE|Alu 105722 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 133.5-30 chr17 80697237 80697416 + 1 NA intron (NM_020761, intron 3 of 33) LTR27B|LTR|ERV1 108306 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 205.5-29 chr4 16436588 16436900 + 1 NA Intergenic Intergenic 210081 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 280.333-10 chr17 30471649 30472064 + 1 NA Intergenic L1MEd|LINE|L1 -5552 NM_001007024 9527 Hs.462680 NM_004871 ENSG00000108587 GOSR1 GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28 golgi SNAP receptor complex member 1 protein-coding 353.333-6 chr7 39368195 39368664 + 1 NA intron (NM_001370959, intron 5 of 9) Tigger1|DNA|TcMar-Tigger 37917 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 221.5-14 chr17 73135013 73135406 + 1 NA Intergenic Intergenic -29801 NM_001050 6752 Hs.514451 NM_001050 ENSG00000180616 SSTR2 - somatostatin receptor 2 protein-coding 203.333-50 chr8 71212469 71212786 + 1 NA intron (NM_001370336, intron 16 of 17) intron (NM_001370336, intron 16 of 17) 144079 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 257.667-5 chr17 29163109 29163409 + 1 NA intron (NM_001346765, intron 2 of 42) GA-rich|Low_complexity|Low_complexity 13514 NM_001346767 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 172.667-83 chr9 31506406 31506673 + 1 NA Intergenic Intergenic -125049 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 161.333-27 chr15 61646672 61646846 + 1 NA Intergenic Intergenic -83159 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 142.667-99 chr8 91590394 91590674 + 1 NA Intergenic LTR78|LTR|ERV1 341215 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 286.5-10 chr3 94311419 94311743 + 1 NA Intergenic Intergenic 248520 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 160.5-12 chr14 72646784 72647064 + 1 NA intron (NM_001280542, intron 8 of 10) MER5A|DNA|hAT-Charlie 130104 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 352.333-5 chr6 51085366 51086169 + 1 NA Intergenic Intergenic 266896 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 222.667-2 chr1 87707083 87707379 + 1 NA Intergenic Intergenic -335576 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 123.167-44 chr19 44006106 44006392 + 1 NA intron (NM_006300, intron 1 of 4) L1MC4|LINE|L1 3292 NM_006300 7773 Hs.193583 NM_006300 ENSG00000159882 ZNF230 FDZF2 zinc finger protein 230 protein-coding 269.833-13 chr20 34901714 34902082 + 1 NA intron (NM_001076552, intron 2 of 18) intron (NM_001076552, intron 2 of 18) 25286 NM_018677 55902 Hs.517034 NM_018677 ENSG00000131069 ACSS2 ACAS2|ACECS|ACS|ACSA|dJ1161H23.1 acyl-CoA synthetase short chain family member 2 protein-coding 213.5-4 chr11 88074790 88075200 + 1 NA Intergenic L1MA6|LINE|L1 100448 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 138.167-69 chr6 56988535 56988692 + 1 NA intron (NM_001318539, intron 2 of 3) L1ME3F|LINE|L1 33506 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 204.5-40 chr7 116738234 116738553 + 1 NA intron (NM_000245, intron 3 of 20) intron (NM_000245, intron 3 of 20) 66197 NM_001324401 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 178.167-9 chr12 78381163 78381420 + 1 NA Intergenic AluJr4|SINE|Alu -21545 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 279.333-7 chr22 40706341 40706677 + 1 NA Intergenic MIRb|SINE|MIR 27331 NM_005297 2847 Hs.248122 NM_005297 ENSG00000128285 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin concentrating hormone receptor 1 protein-coding 209.667-21 chr2 4225435 4225716 + 1 NA Intergenic MIR3|SINE|MIR 251414 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 148.333-36 chr16 34254607 34254808 + 1 NA Intergenic ALR/Alpha|Satellite|centr 91129 NR_162093 113218496 NR_162093 MIR9901 - microRNA 9901 ncRNA 219.667-6 chr11 97471039 97471348 + 1 NA Intergenic L1M1|LINE|L1 962768 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 178.667-21 chr18 7846242 7846440 + 1 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 279025 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 157.833-39 chr2 117810457 117810828 + 1 NA Intergenic L1MD3|LINE|L1 -4049 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 119.333-51 chr2 72170236 72170449 + 1 NA Intergenic L1M5|LINE|L1 -22480 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 254.667-27 chr6 44728863 44729127 + 1 NA Intergenic Intergenic -177114 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 156.333-11 chr10 81620934 81621251 + 1 NA Intergenic L1MA1|LINE|L1 -254102 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 156.333-95 chr9 26388243 26388603 + 1 NA Intergenic L1P4a|LINE|L1 321748 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 200.833-36 chr8 105565495 105565723 + 1 NA intron (NM_001362837, intron 4 of 7) MIRc|SINE|MIR 246066 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 237.333-25 chr3 53418578 53419033 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -71262 NM_001290204 55802 Hs.476353 NM_018403 ENSG00000272886 DCP1A HSA275986|Nbla00360|SMAD4IP1|SMIF decapping mRNA 1A protein-coding 129.333-49 chr2 122718096 122718422 + 1 NA Intergenic MLT2A2|LTR|ERVL 355222 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 173.667 chr1 69963938 69964310 + 1 NA intron (NM_001370785, intron 8 of 26) MIR|SINE|MIR 44802 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 178.5-2 chr1 83539586 83539787 + 1 NA Intergenic L2a|LINE|L2 93632 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 190.5-49 chr7 45425588 45426052 + 1 NA Intergenic Intergenic -148320 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 128.333-13 chr10 7087218 7087366 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR 99492 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 186.5-55 chr5 152665190 152665508 + 1 NA intron (NR_109877, intron 4 of 4) L1MA8|LINE|L1 -260070 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 134.667-70 chr4 65363321 65363488 + 1 NA intron (NM_001281767, intron 12 of 16) MIR|SINE|MIR 306084 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 219.167-19 chr4 12573958 12574242 + 1 NA Intergenic MLT1H|LTR|ERVL-MaLR 350649 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 346.667-2 chr10 114211474 114212079 + 1 NA intron (NM_198795, intron 13 of 25) intron (NM_198795, intron 13 of 25) -27478 NM_001272046 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 121.667-50 chr18 74393508 74393676 + 1 NA Intergenic HAL1|LINE|L1 -15856 NR_131977 101927606 Hs.623809 NR_131977 ENSG00000259779 LINC01922 - long intergenic non-protein coding RNA 1922 ncRNA 224.333-13 chr16 13151798 13152097 + 1 NA intron (NM_001145204, intron 2 of 4) L2c|LINE|L2 250349 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 164.333-66 chr6 45230287 45230564 + 1 NA intron (NM_001350325, intron 2 of 10) L1M2|LINE|L1 -32655 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 202.667-24 chr2 69366263 69366516 + 1 NA intron (NM_002056, intron 3 of 18) intron (NM_002056, intron 3 of 18) 20838 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 167.667-29 chr14 88553839 88554156 + 1 NA intron (NM_007039, intron 1 of 18) intron (NM_007039, intron 1 of 18) 1010 NM_007039 11099 Hs.437040 NM_007039 ENSG00000070778 PTPN21 PTPD1|PTPRL10 protein tyrosine phosphatase non-receptor type 21 protein-coding 146.333-91 chr7 44054543 44054691 + 1 NA intron (NM_001014436, intron 4 of 12) L1MA4|LINE|L1 2851 NR_106896 102466985 NR_106896 ENSG00000284067 MIR6837 hsa-mir-6837 microRNA 6837 ncRNA 251.667 chr10 33779681 33780025 + 1 NA Intergenic Intergenic -7173 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 233.333-34 chr4 78090387 78090659 + 1 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) 32953 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 172.5-51 chr5 72830053 72830248 + 1 NA intron (NM_001364292, intron 1 of 24) intron (NM_001364292, intron 1 of 24) 13489 NM_001364295 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 261.667-16 chr15 64112888 64113260 + 1 NA intron (NM_148955, intron 2 of 12) MER112|DNA|hAT-Charlie 17092 NM_148955 6642 Hs.188634 NM_003099 ENSG00000028528 SNX1 HsT17379|VPS5 sorting nexin 1 protein-coding 213.833-27 chr4 39618544 39618768 + 1 NA intron (NM_001317896, intron 1 of 5) AluSg7|SINE|Alu 8465 NM_001317897 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 134.5-77 chr9 121162346 121162513 + 1 NA TTS (NM_001369895) TTS (NM_001369895) -39054 NM_001353054 2934 Hs.522373 NM_000177 ENSG00000148180 GSN ADF|AGEL gelsolin protein-coding 301.333-2 chr11 23110464 23111150 + 1 NA Intergenic Intergenic -250333 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 152.5-10 chr14 35442339 35442595 + 1 NA Intergenic MER77|LTR|ERVL -37713 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA EDAID2|IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 299.667-6 chr17 62036909 62037325 + 1 NA intron (NM_005121, intron 3 of 29) AluSx1|SINE|Alu 28161 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 182.333-31 chr2 45887236 45887509 + 1 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 235697 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 143.667-69 chr3 59913816 59914035 + 1 NA intron (NR_135491, intron 5 of 6) intron (NR_135491, intron 5 of 6) 166984 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 162.167-40 chr5 26687598 26687891 + 1 NA Intergenic Intergenic 350842 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 326.333-2 chr14 75667063 75667433 + 1 NA intron (NM_015072, intron 2 of 31) intron (NM_015072, intron 2 of 31) 6002 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 230.333-7 chr17 59038096 59038490 + 1 NA intron (NR_148346, intron 17 of 23) intron (NR_148346, intron 17 of 23) 68587 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 144.5-47 chr2 119973310 119973581 + 1 NA intron (NM_002830, intron 26 of 26) L1MB2|LINE|L1 -39632 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 232.333-16 chr2 80940858 80941165 + 1 NA Intergenic Intergenic 525935 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 299.167-4 chr21 31928843 31929228 + 1 NA intron (NM_014586, intron 2 of 10) intron (NM_014586, intron 2 of 10) 56015 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 150.5-60 chr4 164604304 164604467 + 1 NA Intergenic HAL1|LINE|L1 -149746 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 216.667-6 chr11 71085247 71085501 + 1 NA intron (NM_012309, intron 7 of 24) AluSz|SINE|Alu 139422 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 199.833-23 chr5 42785416 42785711 + 1 NA intron (NM_001134848, intron 6 of 8) L1PA17|LINE|L1 26329 NM_005410 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 164.667-7 chr10 60571528 60571741 + 1 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 1322 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 266.667-25 chr8 108237832 108238328 + 1 NA intron (NM_001568, intron 3 of 12) intron (NM_001568, intron 3 of 12) 10637 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 142.5-32 chr18 1449843 1450005 + 1 NA Intergenic L1ME1|LINE|L1 -90295 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 115.167-8 chr1 100083132 100083297 + 1 NA TTS (NM_194292) TTS (NM_194292) 45119 NM_033055 64645 Hs.124156 NM_033055 ENSG00000156875 MFSD14A HIAT1 major facilitator superfamily domain containing 14A protein-coding 176.667-76 chr8 99603271 99603614 + 1 NA intron (NM_017890, intron 33 of 61) MER44B|DNA|TcMar-Tigger -66581 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 131.333-88 chr5 40153528 40153695 + 1 NA Intergenic L1MA6|LINE|L1 101320 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 192.333-55 chr8 135994583 135994943 + 1 NA Intergenic L2c|LINE|L2 -536035 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 274.333-15 chrX 70552750 70553104 + 1 NA intron (NM_001003811, intron 28 of 30) FLAM_C|SINE|Alu -96933 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 232.833-5 chr12 54041177 54041526 + 1 NA intron (NM_014620, intron 1 of 3) intron (NM_014620, intron 1 of 3) 7401 NR_030753 693200 NR_030753 ENSG00000207571 MIR615 MIRN615|hsa-mir-615|mir-615 microRNA 615 ncRNA 295.167-4 chr16 6352346 6352709 + 1 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 332824 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 193.167-39 chr9 8490696 8491019 + 1 NA intron (NM_002839, intron 27 of 45) intron (NM_002839, intron 27 of 45) 243089 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 184.333-11 chr14 62061384 62061714 + 1 NA intron (NM_001367661, intron 4 of 8) L1MEf|LINE|L1 -55808 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 159.5-5 chr10 55980365 55980547 + 1 NA Intergenic Intergenic -352514 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 124.333-17 chr11 80520716 80520977 + 1 NA Intergenic Intergenic 241957 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 120.667-14 chr10 94021145 94021305 + 1 NA intron (NM_001288989, intron 1 of 32) L1M5|LINE|L1 27294 NM_001288989 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 150.167-21 chr16 58975024 58975255 + 1 NA Intergenic Intergenic -240823 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 207.667-5 chr11 101434770 101435112 + 1 NA Intergenic Intergenic 84964 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 186.333-27 chr18 63713184 63713444 + 1 NA intron (NM_001291278, intron 4 of 5) MIRb|SINE|MIR 10354 NM_001370475 89778 Hs.350958 NM_080475 ENSG00000206072 SERPINB11 EPIPIN|SERPIN11 serpin family B member 11 (gene/pseudogene) protein-coding 141.667-60 chr22 34737254 34737598 + 1 NA Intergenic ERVL-E-int|LTR|ERVL 260490 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 184.667-30 chr21 18344961 18345368 + 1 NA intron (NM_002772, intron 10 of 24) intron (NM_002772, intron 10 of 24) 58621 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 242.5-3 chr12 44545258 44545727 + 1 NA intron (NM_006159, intron 16 of 20) intron (NM_006159, intron 16 of 20) 330169 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 117.667-87 chr4 36401134 36401296 + 1 NA Intergenic L1MCa|LINE|L1 25213 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 182.333-34 chr2 101536352 101536687 + 1 NA Intergenic L1ME3E|LINE|L1 -61407 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 191.667-29 chr21 15513255 15513481 + 1 NA Intergenic Intergenic -216566 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 143.667-3 chr1 65802594 65802762 + 1 NA intron (NM_002600, intron 1 of 16) intron (NM_002600, intron 1 of 16) 9783 NM_002600 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 168.5-68 chr8 86629433 86629618 + 1 NA intron (NM_019098, intron 11 of 17) intron (NM_019098, intron 11 of 17) 114150 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 182.833-28 chr20 9254929 9255252 + 1 NA intron (NM_182797, intron 1 of 35) intron (NM_182797, intron 1 of 35) 37700 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 138.833-4 chr1 118301105 118301352 + 1 NA Intergenic Intergenic -116000 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 353.5-9 chrX 78769708 78770505 + 1 NA Intergenic Intergenic 22386 NM_005296 2846 Hs.522701 NM_005296 ENSG00000147145 LPAR4 GPR23|LPA4|P2RY9|P2Y5-LIKE|P2Y9 lysophosphatidic acid receptor 4 protein-coding 139.833-20 chr12 77406903 77407084 + 1 NA Intergenic Intergenic -341424 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 299.667-2 chr10 111616274 111616713 + 1 NA Intergenic Intergenic 502202 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 300.5-5 chr12 120852782 120853205 + 1 NA intron (NM_139015, intron 1 of 10) AluSq2|SINE|Alu 51365 NM_139015 121665 Hs.507087 NM_139015 ENSG00000157837 SPPL3 IMP2|MDHV1887|PRO4332|PSH1|PSL4 signal peptide peptidase like 3 protein-coding 148.333-66 chr3 117421309 117421504 + 1 NA Intergenic Intergenic 269519 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 150.5-37 chr2 27364623 27364799 + 1 NA intron (NM_015636, intron 12 of 12) intron (NM_015636, intron 12 of 12) 5341 NM_172195 8890 Hs.169474 NM_015636 ENSG00000115211 EIF2B4 EIF-2B|EIF2B|EIF2Bdelta eukaryotic translation initiation factor 2B subunit delta protein-coding 292.333-7 chr3 99216017 99216519 + 1 NA Intergenic Intergenic -314573 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 266.667-21 chr7 85408197 85408486 + 1 NA Intergenic Intergenic -12781 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 290.167-5 chr14 68062954 68063592 + 1 NA intron (NM_133509, intron 7 of 10) MSTA|LTR|ERVL-MaLR 239681 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 186.667-71 chr5 130048947 130049255 + 1 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 144636 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 133.333-84 chr3 138181639 138181792 + 1 NA Intergenic Intergenic -5533 NM_014154 25852 Hs.744868 NM_014154 ENSG00000114098 ARMC8 GID5|HSPC056|S863-2|VID28 armadillo repeat containing 8 protein-coding 138.5-63 chr6 66112535 66112788 + 1 NA Intergenic Intergenic 324782 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 189.833-11 chr16 26886626 26887033 + 1 NA Intergenic L1ME1|LINE|L1 -180098 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 212.833-13 chr21 19087006 19087482 + 1 NA Intergenic Intergenic -327432 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 175.333-2 chr1 224852047 224852272 + 1 NA Intergenic Intergenic -77495 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 133.667-36 chr15 58825008 58825224 + 1 NA intron (NM_001040450, intron 5 of 8) intron (NM_001040450, intron 5 of 8) 53814 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 304.667-8 chr14 76763254 76763767 + 1 NA intron (NM_014909, intron 1 of 6) MIRb|SINE|MIR 2042 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 275.333-14 chr2 58552715 58553199 + 1 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 32204 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 212.667-6 chr1 217483587 217484067 + 1 NA intron (NM_018040, intron 8 of 9) L1ME1|LINE|L1 147263 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 127.333-78 chr3 62904647 62904925 + 1 NA Intergenic Intergenic -29370 NM_183393 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 216.167-8 chr15 39987573 39988041 + 1 NA intron (NM_001013703, intron 14 of 38) intron (NM_001013703, intron 14 of 38) 51374 NM_003134 6727 Hs.533732 NM_003134 ENSG00000140319 SRP14 ALURBP signal recognition particle 14 protein-coding 160.333-37 chr3 99083422 99083673 + 1 NA Intergenic Intergenic -181852 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 248.833-8 chr3 65181879 65182152 + 1 NA Intergenic Intergenic -494015 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 150.5-73 chr7 38971951 38972160 + 1 NA Intergenic MIR|SINE|MIR -5854 NM_001166018 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 354.5-3 chr4 53291966 53292514 + 1 NA intron (NM_152540, intron 3 of 8) L1PA8|LINE|L1 73821 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 121.833-20 chr16 59187801 59188271 + 1 NA Intergenic Intergenic -453720 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 230.333-12 chr2 185316047 185316519 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -149211 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 145.5-79 chr8 87115295 87115502 + 1 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 248983 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 121.333-39 chr18 5397006 5397207 + 1 NA exon (NM_001281534, exon 15 of 20) exon (NM_001281534, exon 15 of 20) -100053 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 176.667-23 chr14 63623321 63623519 + 1 NA intron (NM_080666, intron 2 of 2) L1ME1|LINE|L1 18451 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 214.5-43 chr9 87638012 87638382 + 1 NA intron (NM_004938, intron 4 of 25) intron (NM_004938, intron 4 of 25) 84743 NR_146781 100506897 Hs.656160 NR_146781 ENSG00000236709 DAPK1-IT1 - DAPK1 intronic transcript 1 ncRNA 175.167-45 chr8 40597729 40598145 + 1 NA intron (NM_001135731, intron 4 of 5) intron (NM_001135731, intron 4 of 5) -254574 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 155.333-60 chr22 40970723 40970892 + 1 NA intron (NM_014248, intron 4 of 4) intron (NM_014248, intron 4 of 4) 19429 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 132.833-13 chr11 17686222 17686610 + 1 NA Intergenic Intergenic 10523 NR_132279 102723330 Hs.471111 NR_132279 ENSG00000255335 LINC02729 - long intergenic non-protein coding RNA 2729 ncRNA 121.667-73 chr4 76592262 76592442 + 1 NA intron (NM_020859, intron 2 of 10) MIRb|SINE|MIR 16801 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 259.333-25 chr9 34923654 34924107 + 1 NA Intergenic L1MA3|LINE|L1 -28116 NM_001309426 100129969 Hs.571602 NM_001309426 ENSG00000187791 FAM205C FAM205CP family with sequence similarity 205 member C protein-coding 267.833-15 chr8 33554574 33554992 + 1 NA intron (NM_024787, intron 2 of 5) intron (NM_024787, intron 2 of 5) 12345 NM_024787 79845 Hs.151237 NM_024787 ENSG00000133874 RNF122 - ring finger protein 122 protein-coding 121.333-38 chr17 76908615 76908868 + 1 NA intron (NM_144677, intron 8 of 16) L1MA4A|LINE|L1 36094 NM_198955 146664 Hs.144531 NM_144677 ENSG00000167889 MGAT5B GnT-IX|GnT-VB alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B protein-coding 151.833-44 chr5 4230120 4230366 + 1 NA Intergenic Intergenic -543238 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 298.833-6 chr6 69108104 69108595 + 1 NA intron (NM_001704, intron 17 of 31) MIRb|SINE|MIR 473067 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 188.167-19 chr2 75507113 75507471 + 1 NA intron (NM_032181, intron 3 of 3) intron (NM_032181, intron 3 of 3) -16776 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 410.5-2 chr9 75789710 75790728 + 1 NA Intergenic L1M4b|LINE|L1 -100425 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 440.167 chr8 129660164 129660809 + 1 NA intron (NR_130917, intron 1 of 3) Tigger3b|DNA|TcMar-Tigger 19753 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 276.333-15 chr3 185289759 185290078 + 1 NA intron (NM_001242317, intron 2 of 12) MIRb|SINE|MIR 6957 NM_001242317 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 163.167-45 chr7 89990946 89991127 + 1 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -128364 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 187.833-10 chr11 124294940 124295385 + 1 NA Intergenic Intergenic 15604 NM_001002917 283159 Hs.504211 NM_001002917 ENSG00000196341 OR8D1 JCG9|OR8D3|OST004|PDJ9J14 olfactory receptor family 8 subfamily D member 1 protein-coding 317.167-8 chr20 33024017 33024472 + 1 NA TTS (NM_025227) TTS (NM_025227) -7404 NM_174897 128859 Hs.375090 NM_174897 ENSG00000167104 BPIFB6 BPIL3|LPLUNC6 BPI fold containing family B member 6 protein-coding 118.333-34 chr14 86405620 86405988 + 1 NA Intergenic Intergenic 471126 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 144.333-31 chr14 70056601 70056874 + 1 NA intron (NM_033262, intron 3 of 7) intron (NM_033262, intron 3 of 7) 23480 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 216.667-47 chr8 64224642 64224927 + 1 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 143774 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 117.5-58 chr5 85738768 85738962 + 1 NA Intergenic L1MA2|LINE|L1 -543579 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 162.167-7 chr10 108061049 108061416 + 1 NA intron (NR_125760, intron 1 of 4) intron (NR_125760, intron 1 of 4) 8061 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 227.167-27 chr6 55131554 55132010 + 1 NA intron (NM_001526, intron 1 of 7) intron (NM_001526, intron 1 of 7) 25322 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 187.667-20 chr14 82811789 82812071 + 1 NA Intergenic Intergenic 169298 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 316.333-9 chr5 84463661 84464152 + 1 NA Intergenic Intergenic -79026 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 126.5-81 chr8 38906805 38906974 + 1 NA intron (NM_021623, intron 1 of 11) intron (NM_021623, intron 1 of 11) 5543 NM_021623 59339 Hs.369123 NM_021623 ENSG00000169499 PLEKHA2 TAPP2 pleckstrin homology domain containing A2 protein-coding 154.667-16 chr12 28285708 28285875 + 1 NA intron (NM_001352082, intron 4 of 13) MamRep605|LTR?|LTR? -95053 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 215.667-55 chrX 117012552 117012902 + 1 NA Intergenic L1PA13|LINE|L1 -194867 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 199.667-15 chr12 23996036 23996309 + 1 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -45140 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 206.333-33 chr8 58817936 58818623 + 1 NA intron (NM_014729, intron 6 of 8) intron (NM_014729, intron 6 of 8) -158426 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 212.5-16 chr2 182036796 182037162 + 1 NA intron (NM_001261425, intron 2 of 5) L3|LINE|CR1 51126 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 157.5-63 chr7 48944773 48945036 + 1 NA Intergenic Intergenic 20357 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 233.834-3 chr11 77706795 77707462 + 1 NA intron (NM_016578, intron 5 of 15) L2c|LINE|L2 -69322 NM_001311199 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 253.5-18 chr3 55917803 55918211 + 1 NA intron (NR_132749, intron 12 of 17) MLT1J1|LTR|ERVL-MaLR -65413 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 192.667-20 chr15 63078389 63078663 + 1 NA Intergenic Intergenic -29139 NR_147233 111064646 Hs.602995 NR_147233 TPM1-AS TPM1-AS1 TPM1 antisense RNA ncRNA 214.5-17 chr2 10155132 10155438 + 1 NA intron (NR_161344, intron 3 of 3) intron (NR_161344, intron 3 of 3) 13903 NR_161344 348738 Hs.454981 NR_161344 ENSG00000171848 C2orf48 - chromosome 2 open reading frame 48 ncRNA 253.667-3 chr13 81992287 81992740 + 1 NA Intergenic Intergenic -765530 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 239.167-8 chr2 5254243 5254608 + 1 NA Intergenic Intergenic 436693 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 125.667-88 chr4 74638394 74638545 + 1 NA Intergenic Intergenic 156054 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 238.333-19 chr21 28187473 28188038 + 1 NA intron (NR_126012, intron 3 of 5) intron (NR_126012, intron 3 of 5) 40912 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 212.667-20 chr14 87348884 87349334 + 1 NA Intergenic Intergenic 306185 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 232.5-10 chr14 61627376 61627985 + 1 NA intron (NR_039985, intron 1 of 2) LTR33|LTR|ERVL -57027 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 346.667-8 chr8 116896161 116896611 + 1 NA Intergenic L1MA4|LINE|L1 -21520 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|MGS|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 192.167-10 chr12 23283501 23283877 + 1 NA Intergenic L1PA16|LINE|L1 108053 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 276.167-16 chr9 116258499 116259025 + 1 NA intron (NM_002581, intron 7 of 21) L1ME3Cz|LINE|L1 104971 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 182.667-59 chr8 25974470 25974712 + 1 NA intron (NM_022659, intron 6 of 15) intron (NM_022659, intron 6 of 15) 70822 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 140.667-5 chr1 199456746 199457129 + 1 NA Intergenic L2a|LINE|L2 308339 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 152.167-64 chr7 1857631 1857933 + 1 NA intron (NM_001013837, intron 18 of 18) intron (NM_001013837, intron 18 of 18) -13529 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 219.833-8 chr15 57046055 57046430 + 1 NA intron (NM_001322164, intron 3 of 19) MIRb|SINE|MIR 126797 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 282.667-19 chr8 62458888 62459364 + 1 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 210272 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 275.5-7 chr2 57879464 57879922 + 1 NA Intergenic Intergenic -27958 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 151.333-93 chr8 138114617 138114781 + 1 NA Intergenic Intergenic -31154 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 185.5-18 chr2 35933187 35933513 + 1 NA Intergenic Intergenic 422220 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 121.667-61 chr3 17359773 17359927 + 1 NA intron (NM_014744, intron 13 of 21) intron (NM_014744, intron 13 of 21) 340170 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 253.667 chr10 65028153 65028505 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR -103811 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 258.167-5 chr15 59704352 59704904 + 1 NA Intergenic AluSx3|SINE|Alu -15308 NM_001368057 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 146.167-58 chr5 154697015 154697183 + 1 NA intron (NM_001367715, intron 1 of 17) PRIMA4_LTR|LTR|ERV1 11323 NR_031638 100302284 NR_031638 ENSG00000221552 MIR1303 MIRN1303|hsa-mir-1303 microRNA 1303 ncRNA 120.167-18 chr14 64395609 64396043 + 1 NA intron (NM_005956, intron 1 of 27) MER20|DNA|hAT-Charlie 7473 NM_001364837 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 136.333-21 chr12 59895724 59895894 + 1 NA Intergenic Intergenic 206439 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 250.333-12 chr16 59533598 59533951 + 1 NA Intergenic Intergenic 221417 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 185.333-37 chr3 2441881 2442177 + 1 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 203200 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 125.5-40 chr2 54235668 54235870 + 1 NA intron (NM_138448, intron 3 of 3) L1MEg|LINE|L1 20460 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 167.5-35 chr2 113738610 113739003 + 1 NA intron (NM_001330315, intron 7 of 16) MER33|DNA|hAT-Charlie -17438 NR_039943 100616208 NR_039943 ENSG00000265429 MIR4782 - microRNA 4782 ncRNA 221.5-15 chr18 10387309 10387749 + 1 NA Intergenic Intergenic 26841 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 244.333-24 chr5 116505790 116506178 + 1 NA intron (NM_001300780, intron 1 of 19) intron (NM_001300780, intron 1 of 19) 58486 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 322.333-6 chr5 64547970 64548411 + 1 NA intron (NM_001029875, intron 2 of 5) intron (NM_001029875, intron 2 of 5) -27460 NM_001271891 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 138.667-98 chr7 121040815 121041125 + 1 NA intron (NM_001105533, intron 2 of 17) intron (NM_001105533, intron 2 of 17) 51579 NM_001105533 79974 Hs.189652 NM_024913 ENSG00000106034 CPED1 C7orf58 cadherin like and PC-esterase domain containing 1 protein-coding 229.5-5 chr10 43473227 43473660 + 1 NA intron (NM_001355446, intron 2 of 4) intron (NM_001355446, intron 2 of 4) 36332 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 171.667-71 chr6 84088247 84088580 + 1 NA intron (NM_001346543, intron 4 of 4) MIRc|SINE|MIR 54294 NM_001346544 112609 Hs.370055 NM_138409 ENSG00000135324 MRAP2 C6orf117|bA51G5.2 melanocortin 2 receptor accessory protein 2 protein-coding 118.667-66 chr2 199170991 199171198 + 1 NA Intergenic L1MCc|LINE|L1 286845 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 167.5-9 chr10 26849967 26850270 + 1 NA intron (NM_001178116, intron 1 of 11) Charlie1a|DNA|hAT-Charlie 10969 NM_001348034 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 328.5-12 chr8 88633068 88633734 + 1 NA Intergenic Intergenic -305918 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 266.167-14 chr4 65282118 65282687 + 1 NA Intergenic Intergenic -277902 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 127.5-46 chr3 120610578 120610742 + 1 NA Intergenic Intergenic 14324 NM_004547 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 144.167-73 chr8 101246595 101246918 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -40692 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 155.333-49 chr2 88588186 88588395 + 1 NA intron (NM_004836, intron 7 of 16) intron (NM_004836, intron 7 of 16) 36639 NM_001313915 9451 Hs.591589 NM_004836 ENSG00000172071 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 273.667-6 chr13 110586467 110586854 + 1 NA Intergenic L1MD1|LINE|L1 -24938 NM_017817 55647 Hs.743563 NM_017817 ENSG00000139832 RAB20 - RAB20, member RAS oncogene family protein-coding 187.5-13 chr14 54685170 54685413 + 1 NA intron (NM_015589, intron 1 of 11) L1MB3|LINE|L1 -69542 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 217.5-35 chr3 159479384 159479809 + 1 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 196950 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 144.5-49 chr2 157816718 157816952 + 1 NA intron (NM_001111067, intron 2 of 10) intron (NM_001111067, intron 2 of 10) 21795 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 221.333-21 chr5 74233166 74233627 + 1 NA Intergenic Intergenic 74929 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 170.5-14 chr11 123014851 123015249 + 1 NA Intergenic Intergenic -2516 NR_027288 341056 Hs.620309 NR_027288 LOC341056 - SUMO1 activating enzyme subunit 1 pseudogene pseudo 218.167-18 chr3 99523084 99523482 + 1 NA Intergenic Intergenic -115311 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 292.333-6 chr2 101031443 101031900 + 1 NA intron (NR_138475, intron 10 of 18) L1MEd|LINE|L1 29382 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 245.333-20 chr7 3290433 3290781 + 1 NA Intergenic L3|LINE|CR1 -10645 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 204.667-26 chr18 5343177 5343399 + 1 NA Intergenic L1M5|LINE|L1 -46235 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 218.833-3 chr1 162450613 162450886 + 1 NA Intergenic Intergenic -38613 NM_053282 117157 Hs.350581 NM_053282 ENSG00000198574 SH2D1B EAT2 SH2 domain containing 1B protein-coding 190.167-17 chr15 53864095 53864312 + 1 NA Intergenic Intergenic -101325 NR_102334 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 303.333-13 chr8 19615515 19616010 + 1 NA intron (NR_148898, intron 1 of 9) L1M6|LINE|L1 -13217 NR_148901 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 189.833-28 chr8 28124233 28124625 + 1 NA intron (NM_018091, intron 7 of 14) MIR3|SINE|MIR 31290 NM_001284220 55140 Hs.491336 NM_018091 ENSG00000134014 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 116.333-29 chr12 20086105 20086277 + 1 NA intron (NR_040098, intron 2 of 2) L1M5|LINE|L1 41710 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 158.333-11 chr10 112276527 112276788 + 1 NA Intergenic MLT1J2|LTR|ERVL-MaLR -6743 NM_058222 6975 Hs.345485 NM_058222 ENSG00000119913 TECTB - tectorin beta protein-coding 309.333-8 chr4 113147005 113147451 + 1 NA intron (NM_001354237, intron 1 of 46) intron (NM_001354237, intron 1 of 46) -5054 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 251.5-24 chr8 103591636 103591945 + 1 NA intron (NM_001348497, intron 1 of 22) L1ME2z|LINE|L1 -89880 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 184.667-48 chr7 42940198 42940559 + 1 NA Intergenic Intergenic 8002 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 314.167-6 chr2 182938763 182939095 + 1 NA intron (NM_013436, intron 24 of 30) intron (NM_013436, intron 24 of 30) -72292 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 202.333-27 chr20 54710260 54710663 + 1 NA Intergenic Intergenic 234868 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 413.333-2 chr17 30003852 30004745 + 1 NA intron (NR_026738, intron 7 of 15) L1MDa|LINE|L1 62664 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 218.167-8 chr12 48596700 48597183 + 1 NA Intergenic L1ME3B|LINE|L1 -26895 NM_002289 3906 Hs.72938 NM_002289 ENSG00000167531 LALBA LYZG lactalbumin alpha protein-coding 153.333-37 chr2 32791222 32791497 + 1 NA intron (NM_017735, intron 16 of 19) intron (NM_017735, intron 16 of 19) -34074 NR_027098 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 257.5-5 chr1 163111748 163112005 + 1 NA Intergenic L2a|LINE|L2 39971 NM_001113380 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 227.167-4 chr1 241521431 241521831 + 1 NA Intergenic Intergenic -1846 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 153.333-6 chr1 243989467 243989677 + 1 NA intron (NR_033883, intron 2 of 11) MLT1J|LTR|ERVL-MaLR -59367 NM_001278196 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 136.833-5 chr10 103293721 103294116 + 1 NA Intergenic AluSq2|SINE|Alu 16780 NM_032727 9118 Hs.500916 NM_032727 ENSG00000148798 INA NEF5|NF-66|TXBP-1 internexin neuronal intermediate filament protein alpha protein-coding 257.333 chr10 60934623 60935097 + 1 NA intron (NM_001350908, intron 2 of 11) intron (NM_001350908, intron 2 of 11) 9325 NM_014836 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 463.5 chr15 79398769 79399946 + 1 NA intron (NM_001330376, intron 2 of 2) MER81|DNA|hAT-Blackjack -33159 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 279.167-5 chr14 65607177 65607555 + 1 NA intron (NM_178156, intron 2 of 9) L1ME3Cz|LINE|L1 136264 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 128.667-48 chr16 5343680 5343889 + 1 NA Intergenic Intergenic -245964 NM_201598 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 298.5-11 chr3 30481619 30482063 + 1 NA Intergenic AluSq2|SINE|Alu -37027 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 164.333-50 chr4 83915853 83916037 + 1 NA Intergenic Intergenic 379837 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 120.667-84 chr3 175288890 175289077 + 1 NA intron (NM_207015, intron 4 of 13) intron (NM_207015, intron 4 of 13) -17887 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 128.333-56 chr2 38363760 38363905 + 1 NA intron (NM_001330462, intron 1 of 13) intron (NM_001330462, intron 1 of 13) 12698 NM_001330459 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 238.333-20 chr3 64967114 64967468 + 1 NA intron (NR_038264, intron 4 of 5) L1MB5|LINE|L1 -279291 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 199.167-47 chr8 102917372 102917578 + 1 NA intron (NR_126339, intron 2 of 2) AluJb|SINE|Alu 53204 NR_126339 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 166.667-57 chr7 57297421 57297664 + 1 NA Intergenic AluSx1|SINE|Alu -75368 NR_136269 105375297 Hs.586309 NR_136269 ENSG00000234089 LOC105375297 - uncharacterized LOC105375297 ncRNA 207.667-32 chr3 132892051 132892359 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -146083 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 183.667-27 chr15 67667387 67667729 + 1 NA intron (NM_001206804, intron 13 of 21) intron (NM_001206804, intron 13 of 21) 118464 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 156.5-74 chr6 84962361 84962654 + 1 NA Intergenic Charlie1|DNA|hAT-Charlie -197909 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 128.5-31 chr17 77030163 77030310 + 1 NA Intergenic L1ME4b|LINE|L1 -58407 NR_027058 654434 Hs.720923 NR_027058 ENSG00000234912 SNHG20 C17orf86|LINC00338|NCRNA00338|SCARNA16HG small nucleolar RNA host gene 20 ncRNA 322.5-8 chr6 56544147 56544615 + 1 NA intron (NM_001144770, intron 53 of 94) intron (NM_001144770, intron 53 of 94) 98508 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 207.5-5 chr11 46047394 46047817 + 1 NA intron (NR_147890, intron 5 of 18) intron (NR_147890, intron 5 of 18) 73214 NM_001352028 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 213.167-30 chr8 13681452 13681942 + 1 NA Intergenic Intergenic 52007 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 118.667-5 chr1 75249138 75249285 + 1 NA intron (NM_001320283, intron 5 of 21) MLT1J2-int|LTR|ERVL-MaLR 114823 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 226.5-12 chr13 20278328 20278908 + 1 NA Intergenic Intergenic -46223 NM_001110220 10804 Hs.511757 NM_006783 ENSG00000121742 GJB6 CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2 gap junction protein beta 6 protein-coding 184.5-28 chr2 109595631 109595957 + 1 NA intron (NM_001321509, intron 1 of 10) intron (NM_001321509, intron 1 of 10) 17873 NM_001321513 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 170.333-6 chr1 173946991 173947267 + 1 NA intron (NM_001300852, intron 14 of 18) intron (NM_001300852, intron 14 of 18) -29751 NM_000488 462 Hs.75599 NM_000488 ENSG00000117601 SERPINC1 AT3|AT3D|ATIII|ATIII-R2|ATIII-T1|ATIII-T2|THPH7 serpin family C member 1 protein-coding 271.5-12 chr2 70421463 70421834 + 1 NA Intergenic MER5A|DNA|hAT-Charlie 59992 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 155.833-50 chr4 60799877 60800056 + 1 NA Intergenic LTR33A|LTR|ERVL -122653 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 174.167-31 chr5 15860606 15860894 + 1 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -74432 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 228.667-30 chr3 112313856 112314278 + 1 NA intron (NR_147411, intron 1 of 4) THE1D|LTR|ERVL-MaLR 11589 NR_147411 105374042 Hs.436357 NR_147411 ENSG00000239482 LOC105374042 - uncharacterized LOC105374042 ncRNA 119.667-96 chr8 58627507 58627698 + 1 NA intron (NM_001144772, intron 6 of 30) L1PB2|LINE|L1 31805 NM_001144772 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 207.667-45 chr7 10301457 10301725 + 1 NA Intergenic Intergenic -401085 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 245.167-13 chr5 59255885 59256205 + 1 NA intron (NM_001165899, intron 3 of 16) L1MC4a|LINE|L1 20070 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 147.833-13 chr11 128374275 128374715 + 1 NA Intergenic L1MB3|LINE|L1 147815 NM_001330451 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 165.667-30 chr17 78585187 78585376 + 1 NA Intergenic Intergenic -7887 NM_173628 8632 Hs.375975 NM_003727 ENSG00000187775 DNAH17 DNAHL1|DNEL2 dynein axonemal heavy chain 17 protein-coding 216.667-19 chr16 1838642 1839187 + 1 NA intron (NM_001018104, intron 2 of 2) AluSz6|SINE|Alu 11690 NM_001142398 81889 Hs.513265 NM_031208 ENSG00000180185 FAHD1 C16orf36|YISKL fumarylacetoacetate hydrolase domain containing 1 protein-coding 243.667-11 chr14 43459266 43459783 + 1 NA Intergenic L1PA10|LINE|L1 1047759 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 176.667-57 chr4 65978606 65978917 + 1 NA Intergenic Intergenic -298063 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 168.5-39 chr4 44695453 44695672 + 1 NA intron (NM_001345868, intron 14 of 15) intron (NM_001345868, intron 14 of 15) 17142 NM_021927 60558 Hs.546419 NM_021927 ENSG00000151806 GUF1 EF-4|EF4|EIEE40 GUF1 homolog, GTPase protein-coding 142.5-10 chr10 52094092 52094262 + 1 NA intron (NM_001098512, intron 7 of 17) intron (NM_001098512, intron 7 of 17) 219951 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 137.667-40 chr17 19805456 19805686 + 1 NA intron (NM_014683, intron 14 of 26) MLT1J|LTR|ERVL-MaLR -57273 NM_000691 218 Hs.531682 NM_000691 ENSG00000108602 ALDH3A1 ALDH3|ALDHIII aldehyde dehydrogenase 3 family member A1 protein-coding 176.667-47 chr3 26049860 26050149 + 1 NA Intergenic Intergenic -176309 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 160.5-33 chr3 2320904 2321197 + 1 NA intron (NM_001206955, intron 1 of 23) intron (NM_001206955, intron 1 of 23) 82221 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 175.667-19 chr15 41746046 41746373 + 1 NA intron (NM_001164273, intron 15 of 23) intron (NM_001164273, intron 15 of 23) -28275 NR_049761 23005 Hs.513661 NM_014994 ENSG00000137802 MAPKBP1 JNKBP-1|JNKBP1|NPHP20 mitogen-activated protein kinase binding protein 1 protein-coding 266.5-2 chr11 95216415 95216755 + 1 NA intron (NM_001271594, intron 1 of 8) intron (NM_001271594, intron 1 of 8) -13601 NR_110295 100129203 Hs.191599 NR_110295 LOC100129203 - uncharacterized LOC100129203 ncRNA 198.333-36 chr5 93928172 93928631 + 1 NA intron (NR_028080, intron 4 of 8) intron (NR_028080, intron 4 of 8) 183262 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 272.667-8 chr3 57772928 57773358 + 1 NA intron (NM_001304420, intron 1 of 21) MLT1N2|LTR|ERVL-MaLR 15887 NM_001304421 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 146.333 chr1 20395293 20395467 + 1 NA intron (NR_033887, intron 6 of 11) L1MDa|LINE|L1 33414 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 165.833-21 chr15 63302573 63302948 + 1 NA intron (NM_031301, intron 5 of 5) intron (NM_031301, intron 5 of 5) 25155 NM_031301 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 217.5-45 chr6 164806946 164807258 + 1 NA intron (NR_131926, intron 1 of 3) THE1D-int|LTR|ERVL-MaLR 14961 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 269.833-18 chr5 147514170 147514674 + 1 NA Intergenic Intergenic -4354 NM_001197294 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 183.667-56 chr4 102343519 102343830 + 1 NA intron (NM_022154, intron 1 of 7) intron (NM_022154, intron 1 of 7) 1517 NM_022154 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 192.833-2 chr1 88290024 88290293 + 1 NA Intergenic Intergenic -393986 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 208.333-36 chr5 152058461 152058883 + 1 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 99774 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 179.333-49 chr6 49802059 49802370 + 1 NA Intergenic Intergenic -9326 NR_125839 101927020 Hs.571168 NR_125839 LOC101927020 - uncharacterized LOC101927020 ncRNA 139.833-43 chr2 116323514 116323862 + 1 NA Intergenic L1MA7|LINE|L1 979873 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 162.333-16 chr12 128218799 128219134 + 1 NA Intergenic Intergenic -48437 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 132.5-73 chr5 61529585 61529754 + 1 NA intron (NM_020928, intron 7 of 13) Tigger16b|DNA|TcMar-Tigger -108091 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 141.333-27 chr14 28133779 28134246 + 1 NA Intergenic MER1B|DNA|hAT-Charlie -460791 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 127.667-34 chr18 38683553 38683757 + 1 NA Intergenic L1MC3|LINE|L1 938520 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 304.833-4 chr4 28439859 28440493 + 1 NA Intergenic Intergenic -379406 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 151.333-43 chr2 53223555 53223726 + 1 NA Intergenic Intergenic -521025 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 381.333-4 chr6 134978107 134978708 + 1 NA TTS (NR_037435) TTS (NR_037435) 1025 NR_037435 100500880 NR_037435 ENSG00000283409 MIR3662 mir-3662 microRNA 3662 ncRNA 245.667-2 chr10 91686530 91687055 + 1 NA Intergenic Intergenic -53721 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 292.833 chr1 24017039 24017660 + 1 NA Intergenic Intergenic -36886 NR_034035 10772 Hs.3530 NM_006625 ENSG00000188529 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine and arginine rich splicing factor 10 protein-coding 206.833-5 chr17 59717717 59718084 + 1 NA intron (NM_001329394, intron 1 of 11) AluSx|SINE|Alu 10246 NM_001329394 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 155.833-25 chr2 20273581 20273938 + 1 NA intron (NM_001282790, intron 11 of 18) intron (NM_001282790, intron 11 of 18) -48326 NM_001006946 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 279.667-12 chr3 102029640 102030041 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR 88981 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 202.333-49 chr8 78266618 78266918 + 1 NA Intergenic THE1A-int|LTR|ERVL-MaLR -249572 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 180.5-46 chr6 128894018 128894231 + 1 NA intron (NM_000426, intron 1 of 64) Charlie1|DNA|hAT-Charlie 10983 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 215.167-18 chr3 18864972 18865408 + 1 NA Intergenic Intergenic -283320 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 312.667-2 chr13 43643926 43644342 + 1 NA intron (NM_001347964, intron 2 of 17) intron (NM_001347964, intron 2 of 17) -14657 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 270.167-12 chr4 62474846 62475340 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -313328 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 167.5-7 chr1 212023273 212023604 + 1 NA intron (NM_015434, intron 1 of 19) L1PA16|LINE|L1 -12115 NM_001286230 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 118.333 chr1 27836286 27836439 + 1 NA intron (NM_138558, intron 2 of 6) Charlie18a|DNA|hAT-Charlie 1961 NR_002997 677774 Hs.689694 NR_002997 ENSG00000252947 SCARNA1 ACA35 small Cajal body-specific RNA 1 ncRNA 141.667-78 chr4 62185639 62185858 + 1 NA Intergenic Intergenic -23983 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 154.333-7 chr10 42394324 42394643 + 1 NA Intergenic AluSx3|SINE|Alu -26438 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 205.667-38 chr2 213860894 213861179 + 1 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 102969 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 197.167-53 chr7 28494134 28494578 + 1 NA intron (NM_182898, intron 2 of 10) intron (NM_182898, intron 2 of 10) 58741 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 352.667-4 chr2 14522885 14523459 + 1 NA Intergenic Intergenic -109545 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 173.167-40 chr6 52435936 52436123 + 1 NA intron (NR_033327, intron 2 of 9) MIR3|SINE|MIR 15021 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 231.333-20 chr2 182414691 182415186 + 1 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) 12110 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 183.333-42 chr4 99214375 99214858 + 1 NA intron (NM_001102470, intron 2 of 8) MIRb|SINE|MIR 4630 NR_132990 130 Hs.586161 NM_000672 ENSG00000172955 ADH6 ADH-5 alcohol dehydrogenase 6 (class V) protein-coding 202.667-51 chr9 36039710 36039974 + 1 NA intron (NM_021111, intron 1 of 20) intron (NM_021111, intron 1 of 20) 2929 NM_001316346 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 152.167-13 chr11 73686776 73686981 + 1 NA intron (NM_001243718, intron 3 of 4) L1MB3|LINE|L1 37965 NM_001130036 58473 Hs.445489 NM_021200 ENSG00000021300 PLEKHB1 KPL1|PHR1|PHRET1 pleckstrin homology domain containing B1 protein-coding 203.333-3 chr1 173694945 173695177 + 1 NA Intergenic Intergenic -19920 NM_014458 27252 Hs.495035 NM_014458 ENSG00000076321 KLHL20 KHLHX|KLEIP|KLHLX kelch like family member 20 protein-coding 220.5-29 chr6 38472883 38473135 + 1 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) -8587 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 172.167-27 chr20 18180951 18181224 + 1 NA intron (NM_020536, intron 6 of 9) intron (NM_020536, intron 6 of 9) 35988 NR_028402 57325 Hs.488051 NM_020536 ENSG00000149474 KAT14 ATAC2|CRP2BP|CSRP2BP|PRO1194|dJ717M23.1 lysine acetyltransferase 14 protein-coding 121.333-12 chr10 116574709 116574941 + 1 NA Intergenic MSTD|LTR|ERVL-MaLR -16134 NM_006229 5407 Hs.73923 NM_006229 ENSG00000187021 PNLIPRP1 PLRP1 pancreatic lipase related protein 1 protein-coding 204.833-11 chr14 19882070 19882498 + 1 NA Intergenic LTR67B|LTR|ERVL 6016 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 139.167-62 chr7 32871997 32872380 + 1 NA intron (NM_015483, intron 3 of 3) AluJo|SINE|Alu 19572 NM_015483 25948 Hs.372541 NM_015483 ENSG00000170852 KBTBD2 BKLHD1 kelch repeat and BTB domain containing 2 protein-coding 203.167-36 chr8 84261306 84261748 + 1 NA intron (NM_001354320, intron 2 of 9) THE1C|LTR|ERVL-MaLR 76861 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 217.333-29 chr5 43385717 43385980 + 1 NA intron (NM_001301874, intron 2 of 3) intron (NM_001301874, intron 2 of 3) 11289 NM_001301875 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 132.167-62 chr7 11904900 11905125 + 1 NA Intergenic Intergenic -72814 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 236.667-35 chr7 25207762 25208259 + 1 NA Intergenic AluJr4|SINE|Alu 20476 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 185.167-42 chr8 138304718 138304939 + 1 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) 192433 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 369.167 chr14 71538800 71539406 + 1 NA intron (NM_001354289, intron 5 of 23) intron (NM_001354289, intron 5 of 23) -47195 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 186.667-75 chr7 88615349 88615647 + 1 NA Intergenic Intergenic -144202 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 205.333-53 chr6 69233452 69233960 + 1 NA intron (NM_001704, intron 18 of 31) intron (NM_001704, intron 18 of 31) 562760 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 195.333-44 chr5 81456849 81457410 + 1 NA intron (NM_012446, intron 10 of 16) L1MC4|LINE|L1 -62995 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 165.833-14 chr12 84360661 84360940 + 1 NA Intergenic Intergenic 551999 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 203.333-27 chr21 36579285 36579511 + 1 NA Intergenic Intergenic -2829 NM_001146077 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 186.5-14 chr11 22841483 22841747 + 1 NA Intergenic L1MD|LINE|L1 -11814 NM_001320342 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 201.333-36 chr7 4870759 4871136 + 1 NA intron (NM_018059, intron 2 of 14) intron (NM_018059, intron 2 of 14) -8917 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 132.333-112 chr8 137381895 137382112 + 1 NA Intergenic Intergenic 31585 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 195.667-25 chr20 44825676 44826177 + 1 NA Intergenic Intergenic -15380 NM_182970 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 154.5-14 chr12 22264702 22264943 + 1 NA intron (NM_003034, intron 2 of 4) intron (NM_003034, intron 2 of 4) 69892 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 223.833-5 chr1 181327822 181328525 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR 91785 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 255.333-25 chr8 40514923 40515293 + 1 NA Intergenic Intergenic -171745 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 322.667-4 chr20 36727723 36728201 + 1 NA intron (NM_032013, intron 1 of 15) FLAM_A|SINE|Alu 18128 NM_022477 57446 Hs.437338 NM_022477 ENSG00000101079 NDRG3 - NDRG family member 3 protein-coding 150.333-58 chr2 120598935 120599147 + 1 NA Intergenic Intergenic -132692 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 180.667-68 chr7 94069989 94070243 + 1 NA Intergenic MIR3|SINE|MIR -65761 NR_133909 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 237.333-34 chr7 4280833 4281448 + 1 NA Intergenic L1MD|LINE|L1 -146303 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 269.5-21 chr9 132294469 132294835 + 1 NA intron (NM_001351527, intron 15 of 25) MLT1J|LTR|ERVL-MaLR 60204 NM_001351527 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 189.833-27 chr7 95865515 95865760 + 1 NA intron (NM_004411, intron 5 of 16) Tigger3a|DNA|TcMar-Tigger 93131 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 205.167-34 chr5 123616566 123616869 + 1 NA 3' UTR (NM_001364141, exon 15 of 15) 3' UTR (NM_001364141, exon 15 of 15) 71300 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 168.5-32 chr2 200494093 200494333 + 1 NA intron (NM_001321550, intron 5 of 6) L1MB5|LINE|L1 15855 NM_001321547 130535 Hs.605775 NM_152387 ENSG00000155729 KCTD18 6530404F10Rik potassium channel tetramerization domain containing 18 protein-coding 170.667-9 chr11 47384417 47384686 + 1 NA Intergenic L1MA3|LINE|L1 -6004 NM_001080547 6688 Hs.502511 NM_003120 ENSG00000066336 SPI1 OF|PU.1|SFPI1|SPI-1|SPI-A Spi-1 proto-oncogene protein-coding 280.5-10 chr6 130308965 130309354 + 1 NA intron (NM_001258275, intron 2 of 13) intron (NM_001258275, intron 2 of 13) 56709 NM_001258275 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 156.667-79 chr7 31727963 31728251 + 1 NA Intergenic Intergenic 40892 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 116.333-39 chr15 47945882 47946112 + 1 NA Intergenic Intergenic -99761 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 255.667-21 chr8 29905931 29906370 + 1 NA Intergenic MLT2D|LTR|ERVL -15363 NR_024473 286135 Hs.376840 NR_024473 ENSG00000253279 LINC02209 FAM183CP long intergenic non-protein coding RNA 2209 ncRNA 183.5-43 chr3 82519748 82520047 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR 533755 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 146.833-48 chr4 86309039 86309246 + 1 NA intron (NM_001363657, intron 2 of 13) intron (NM_001363657, intron 2 of 13) 45502 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 172.333-23 chr15 69112263 69112496 + 1 NA Intergenic Intergenic 31529 NR_026949 283673 Hs.177927 NM_173610 ENSG00000212766 EWSAT1 LINC00277|NCRNA00277|TMEM84 Ewing sarcoma associated transcript 1 ncRNA 267.5-11 chr4 137492440 137492844 + 1 NA Intergenic LTR16A2|LTR|ERVL 39852 NM_019035 54510 Hs.591691 NM_019035 ENSG00000189184 PCDH18 PCDH68L protocadherin 18 protein-coding 209.833-13 chr2 37319866 37320214 + 1 NA Intergenic Intergenic -2956 NM_005813 23683 Hs.660757 NM_005813 ENSG00000115825 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 135.5-53 chr3 19317004 19317177 + 1 NA intron (NM_144633, intron 3 of 15) intron (NM_144633, intron 3 of 15) -2159 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 240.833-5 chr11 97747231 97747686 + 1 NA Intergenic Intergenic 1239033 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 174.667-74 chr9 14549005 14549374 + 1 NA Intergenic Intergenic -17112 NM_001369458 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 283.667-13 chr3 4779048 4779575 + 1 NA intron (NM_001168272, intron 47 of 60) intron (NM_001168272, intron 47 of 60) -27721 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 113.667-56 chr19 32515955 32516175 + 1 NA Intergenic Intergenic -65125 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 210.5-24 chr2 69121413 69121680 + 1 NA intron (NM_032208, intron 10 of 17) intron (NM_032208, intron 10 of 17) 17864 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 224.5-11 chr17 64126443 64126824 + 1 NA intron (NM_001433, intron 1 of 21) intron (NM_001433, intron 1 of 21) 3511 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 224.167-25 chr6 45909540 45910018 + 1 NA intron (NM_001114086, intron 5 of 5) L1PA16|LINE|L1 27818 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 140.167-48 chr4 66294862 66295247 + 1 NA Intergenic L1PA14|LINE|L1 18230 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 153.5-57 chr5 121392794 121393060 + 1 NA Intergenic Intergenic 70377 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 261.667-31 chr6 49090169 49090554 + 1 NA Intergenic AluSc|SINE|Alu 372892 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 287.333-7 chr4 15547369 15547738 + 1 NA intron (NM_001080522, intron 18 of 37) MER20|DNA|hAT-Charlie 77671 NM_001164720 57545 Hs.590928 NM_020785 ENSG00000048342 CC2D2A JBTS9|MKS6 coiled-coil and C2 domain containing 2A protein-coding 144.5-42 chr2 38823165 38823471 + 1 NA intron (NM_001329963, intron 16 of 23) intron (NM_001329963, intron 16 of 23) 45108 NM_024775 79833 Hs.143818 NM_024775 ENSG00000152147 GEMIN6 - gem nuclear organelle associated protein 6 protein-coding 199.667-24 chr2 54203506 54203786 + 1 NA intron (NM_138448, intron 3 of 3) L1MB7|LINE|L1 52583 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 190.5-8 chr11 23706147 23706469 + 1 NA Intergenic L1ME3F|LINE|L1 -287118 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 148.667-5 chr1 110655799 110656050 + 1 NA non-coding (NR_109846, exon 3 of 3) non-coding (NR_109846, exon 3 of 3) 15851 NR_109846 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 238.167-8 chr14 94934848 94935238 + 1 NA Intergenic Intergenic 164401 NR_144432 108868751 NR_144432 GSC-DT DIGIT GSC divergent transcript ncRNA 213.333-18 chr2 102617383 102617614 + 1 NA Intergenic Intergenic -2055 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 138.167-40 chr2 42150594 42150762 + 1 NA intron (NR_110584, intron 1 of 3) intron (NR_110584, intron 1 of 3) -18675 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 146.333-88 chr6 145443207 145443400 + 1 NA Intergenic L1PREC2|LINE|L1 243574 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 118.667-41 chr17 61542339 61542572 + 1 NA Intergenic L1MC1|LINE|L1 48764 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 178.5-25 chr13 90421103 90421371 + 1 NA Intergenic HAL1ME|LINE|L1 -72051 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 168.333-28 chr2 80636699 80637012 + 1 NA intron (NM_001320810, intron 12 of 12) intron (NM_001320810, intron 12 of 12) 323476 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 278.333 chr1 102048434 102048902 + 1 NA Intergenic Intergenic -51434 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 169.5-40 chr22 24333430 24333841 + 1 NA intron (NM_015330, intron 8 of 16) intron (NM_015330, intron 8 of 16) -8473 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 115.333-4 chr1 119948846 119949097 + 1 NA intron (NM_001200001, intron 16 of 21) intron (NM_001200001, intron 16 of 21) -52456 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 189.5-38 chr3 117685851 117686289 + 1 NA intron (NR_146652, intron 2 of 3) intron (NR_146652, intron 2 of 3) 4855 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 169.5-3 chr1 113838717 113838886 + 1 NA intron (NM_012411, intron 9 of 18) intron (NM_012411, intron 9 of 18) -17834 NR_037864 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 304.333-3 chr12 55088182 55088579 + 1 NA Intergenic Intergenic -41389 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 288.667-3 chr12 70035939 70036325 + 1 NA Intergenic Intergenic -206898 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 131.5-86 chr8 124765633 124765850 + 1 NA Intergenic Intergenic -37234 NM_014751 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 220.5-27 chr4 71868086 71868325 + 1 NA Intergenic Intergenic -62685 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 455.333 chr14 72458366 72459117 + 1 NA intron (NM_001370288, intron 5 of 16) MLT1A0|LTR|ERVL-MaLR -58079 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 149.333-59 chr20 55146149 55146373 + 1 NA Intergenic MER2|DNA|TcMar-Tigger -276782 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 148.333-54 chr20 38100101 38100288 + 1 NA Intergenic L1MEc|LINE|L1 65076 NM_001323317 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 200.5-7 chr12 51787346 51787565 + 1 NA intron (NM_001369788, intron 21 of 25) MIRb|SINE|MIR 44462 NM_001013690 401720 Hs.648218 NM_001013690 ENSG00000261308 FIGNL2 - fidgetin like 2 protein-coding 209.333-23 chr21 30988771 30989164 + 1 NA Intergenic Intergenic 49509 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 217.833-8 chr15 23933338 23933618 + 1 NA Intergenic L1MA7|LINE|L1 -41669 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 178.5-42 chr2 49644830 49645082 + 1 NA Intergenic Intergenic 329247 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 206.667-43 chr6 66937891 66938213 + 1 NA Intergenic Intergenic -1117299 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 235.833-13 chr22 31916576 31917145 + 1 NA Intergenic Intergenic 21594 NM_001302819 25775 Hs.627602 NM_015372 ENSG00000128254 C22orf24 HSN44A4A chromosome 22 open reading frame 24 protein-coding 212.5-13 chr2 58641159 58641508 + 1 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 120580 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 247.167-5 chr14 68497441 68497978 + 1 NA 3' UTR (NM_002877, exon 11 of 11) 3' UTR (NM_002877, exon 11 of 11) 131078 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 165.667-76 chr9 27155245 27155509 + 1 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 46236 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 237.167-23 chr8 118539997 118540289 + 1 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -80858 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 137.333-78 chr5 108459682 108459945 + 1 NA Intergenic Intergenic -77715 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 412.5-3 chr2 99019489 99020146 + 1 NA intron (NR_146001, intron 16 of 18) (AAAGA)n|Simple_repeat|Simple_repeat -83592 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 199.833-24 chr5 105961861 105962083 + 1 NA Intergenic HAL1|LINE|L1 862498 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 283.667-10 chr15 59490527 59491031 + 1 NA intron (NM_152450, intron 3 of 8) AluSz|SINE|Alu 52593 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 185.5-27 chr21 30466949 30467311 + 1 NA Intergenic Intergenic 13237 NM_181607 337882 Hs.61552 NM_181607 ENSG00000184351 KRTAP19-1 KAP19.1 keratin associated protein 19-1 protein-coding 175.333-40 chr3 89975574 89975767 + 1 NA Intergenic Intergenic 868049 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 130.333-30 chr13 100886428 100886802 + 1 NA intron (NR_047687, intron 2 of 7) intron (NR_047687, intron 2 of 7) 57749 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 178.5-29 chr14 69410780 69411009 + 1 NA intron (NM_001330185, intron 1 of 5) intron (NM_001330185, intron 1 of 5) 12202 NM_001330185 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 210.5-22 chr2 17485610 17485927 + 1 NA Intergenic MIRb|SINE|MIR 32672 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 130.5-81 chr9 82480251 82480397 + 1 NA Intergenic Intergenic 491552 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 115.167-33 chr14 60250172 60250377 + 1 NA intron (NM_021003, intron 1 of 5) intron (NM_021003, intron 1 of 5) 1053 NM_177951 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 228.667-31 chr5 83288649 83289173 + 1 NA intron (NM_022550, intron 7 of 7) L1MCb|LINE|L1 -182763 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 175.5-14 chr11 82650015 82650245 + 1 NA Intergenic MLT2A2|LTR|ERVL 83734 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 167.5-29 chr2 9701151 9701585 + 1 NA Intergenic L1ME3Cz|LINE|L1 -70371 NM_006826 10971 Hs.74405 NM_006826 ENSG00000134308 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 258.667-5 chr11 132913757 132914269 + 1 NA intron (NM_001319104, intron 1 of 6) intron (NM_001319104, intron 1 of 6) 29624 NM_001319106 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 148.5-76 chrX 46699346 46699650 + 1 NA intron (NM_001257291, intron 1 of 16) intron (NM_001257291, intron 1 of 16) 59620 NM_001257291 84679 Hs.91389 NM_032591 ENSG00000065923 SLC9A7 MRX108|NHE-7|NHE7|SLC9A6 solute carrier family 9 member A7 protein-coding 168.333-25 chr18 74890554 74890798 + 1 NA intron (NM_017757, intron 6 of 7) intron (NM_017757, intron 6 of 7) 259713 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 154.167-4 chr10 11932454 11932918 + 1 NA intron (NM_080599, intron 19 of 21) intron (NM_080599, intron 19 of 21) -37976 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 198.333-20 chr2 20193200 20193490 + 1 NA Intergenic Intergenic 31785 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 134.667-2 chr1 52945232 52945381 + 1 NA intron (NM_001193599, intron 2 of 14) FAM|SINE|Alu 18030 NM_002979 6342 Hs.476365 NM_002979 ENSG00000116171 SCP2 NLTP|NSL-TP|SCP-2|SCP-CHI|SCP-X|SCPX sterol carrier protein 2 protein-coding 177.5-65 chr5 130648843 130649134 + 1 NA Intergenic Intergenic 516268 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 124.667-58 chr2 21802348 21802585 + 1 NA Intergenic Intergenic -91814 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 188.333-13 chr12 44465428 44465831 + 1 NA Intergenic L2a|LINE|L2 410032 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 214.5 chr1 184529916 184530349 + 1 NA intron (NM_030806, intron 3 of 5) intron (NM_030806, intron 3 of 5) 143103 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 120.667-7 chr1 116083683 116084141 + 1 NA Intergenic L1ME4a|LINE|L1 -27843 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 299.667-8 chr2 125265028 125265652 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger 852645 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 316.667-9 chr4 46114348 46114957 + 1 NA intron (NM_173536, intron 1 of 8) intron (NM_173536, intron 1 of 8) 9402 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 194.667-68 chr9 82643224 82643485 + 1 NA Intergenic L1MA4A|LINE|L1 419788 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 260.5-20 chr6 69833987 69834308 + 1 NA Intergenic Intergenic -32409 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 434.667-2 chr5 164895406 164896221 + 1 NA Intergenic Intergenic 425534 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 145.333-80 chr7 26831040 26831496 + 1 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 26455 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 155.5-18 chr16 8368976 8369153 + 1 NA Intergenic L2c|LINE|L2 220774 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 130.333-71 chr4 175097759 175097968 + 1 NA Intergenic L1MA9|LINE|L1 179505 NM_001130705 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 319.667-4 chr14 75930227 75930572 + 1 NA intron (NM_015072, intron 31 of 31) Tigger4a|DNA|TcMar-Tigger 51596 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 116.5-32 chr2 12940704 12940927 + 1 NA Intergenic Intergenic 66198 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 322.833 chr11 42967006 42967562 + 1 NA Intergenic Intergenic 302085 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 123.167-23 chr12 62314408 62314746 + 1 NA intron (NM_001351165, intron 4 of 23) intron (NM_001351165, intron 4 of 23) 54173 NR_147082 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 183.333-12 chr11 76319019 76319304 + 1 NA Intergenic L2b|LINE|L2 61804 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 230.167-27 chr9 29139933 29140343 + 1 NA intron (NM_001354574, intron 1 of 5) L1M4|LINE|L1 72161 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 216.333-48 chr8 103850420 103850904 + 1 NA intron (NR_145711, intron 1 of 21) intron (NR_145711, intron 1 of 21) 31442 NM_001348502 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 266.667-20 chr7 20500721 20501226 + 1 NA Intergenic L1PREC2|LINE|L1 -114694 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 247.5-8 chr14 98261319 98261730 + 1 NA Intergenic Intergenic -283400 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 123.333-39 chr15 47502172 47502434 + 1 NA intron (NM_001198999, intron 3 of 19) intron (NM_001198999, intron 3 of 19) -215202 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 330.5-3 chr3 174657337 174657769 + 1 NA Intergenic L1MC1|LINE|L1 -201781 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 166.5-65 chrX 52408004 52408492 + 1 NA Intergenic Intergenic 39227 NM_130777 9502 Hs.409726 NM_130777 ENSG00000155622 XAGE2 CT12.2|GAGED3|XAGE-2|XAGE2B X antigen family member 2 protein-coding 147.5-10 chr1 219186166 219186346 + 1 NA intron (NM_001350629, intron 3 of 5) L1MEf|LINE|L1 11287 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 211.333-31 chr20 12871521 12871850 + 1 NA intron (NR_109868, intron 10 of 11) intron (NR_109868, intron 10 of 11) 65278 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 217.5-8 chr13 43692964 43693483 + 1 NA intron (NM_001347969, intron 1 of 16) L1ME4a|LINE|L1 -63746 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 194.333-29 chr4 94237408 94237677 + 1 NA intron (NM_001128429, intron 5 of 23) intron (NM_001128429, intron 5 of 23) -15767 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 168.667-59 chr4 60885493 60885691 + 1 NA Intergenic Intergenic -37027 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 165.833-36 chr2 209384607 209385051 + 1 NA Intergenic Intergenic -39218 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 145.667-5 chr1 119592934 119593142 + 1 NA Intergenic L1MC1|LINE|L1 6253 NR_036540 644242 Hs.515383 NR_036540 ENSG00000260941 LINC00622 - long intergenic non-protein coding RNA 622 ncRNA 321.833 chr10 65737170 65737539 + 1 NA intron (NR_120647, intron 5 of 5) L2|LINE|L2 165929 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 166.167-48 chr5 111336768 111337068 + 1 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 112534 NM_001323377 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 309.333-9 chr6 56327422 56327828 + 1 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 66503 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 146.333-21 chr11 114044445 114044639 + 1 NA Intergenic Intergenic -15169 NM_001354750 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 269.667-8 chr11 113177140 113177627 + 1 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) 96518 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 157.333-61 chr5 106462365 106462657 + 1 NA Intergenic Intergenic 548503 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 177.667-52 chr4 18112924 18113118 + 1 NA Intergenic Intergenic -91146 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 132.833-6 chr1 220548899 220549113 + 1 NA intron (NM_018650, intron 1 of 17) intron (NM_018650, intron 1 of 17) 20823 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 234.333-3 chr1 211006812 211007143 + 1 NA intron (NM_002238, intron 6 of 10) L1ME4a|LINE|L1 126397 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 156.667-76 chr6 110102207 110102493 + 1 NA intron (NM_001024935, intron 8 of 9) intron (NM_001024935, intron 8 of 9) 77320 NM_003931 8936 Hs.75850 NM_003931 ENSG00000112290 WASF1 SCAR1|WAVE|WAVE1 WASP family member 1 protein-coding 326.667-2 chr15 62123714 62124194 + 1 NA Intergenic MER117|DNA|hAT-Charlie 41331 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 295.333-13 chr5 34436079 34436534 + 1 NA Intergenic Arthur1B|DNA|hAT-Tip100 -191582 NR_146599 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 228.5-9 chr14 66208601 66208936 + 1 NA Intergenic MER34B|LTR|ERV1 -277603 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 248.167-20 chr5 110381243 110381595 + 1 NA Intergenic L1MC2|LINE|L1 132496 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 249.833-4 chr10 117362125 117362474 + 1 NA intron (NM_173791, intron 1 of 4) intron (NM_173791, intron 1 of 4) 13141 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 136.167-69 chr7 7450563 7450928 + 1 NA intron (NM_001037763, intron 18 of 34) L1ME3Cz|LINE|L1 85128 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 217.167-14 chr5 171632517 171633053 + 1 NA Intergenic Intergenic -153087 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 284.5-18 chr9 130763270 130763762 + 1 NA intron (NM_007313, intron 1 of 10) MLT1F|LTR|ERVL-MaLR 49635 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 280.333-8 chr15 25123969 25124496 + 1 NA intron (NR_146177, intron 61 of 147) L1MC4a|LINE|L1 7687 NR_023915 3653 Hs.555970 NR_023915 IPW NCRNA00002 imprinted in Prader-Willi syndrome ncRNA 149.667-47 chr22 21816677 21816927 + 1 NA intron (NM_002745, intron 1 of 8) CR1-3_Croc|LINE|CR1 50878 NM_138957 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 259.833-17 chr9 26983576 26983909 + 1 NA intron (NM_001099224, intron 4 of 13) intron (NM_001099224, intron 4 of 13) 21930 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 256.333-17 chr3 163308165 163308653 + 1 NA Intergenic L1MA1|LINE|L1 -5108 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 249.333-24 chr6 159689153 159689608 + 1 NA intron (NM_001024465, intron 2 of 5) L2a|LINE|L2 3861 NM_001024465 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 191.667-26 chr2 179810855 179811191 + 1 NA intron (NR_148056, intron 1 of 9) L1PA16|LINE|L1 49885 NR_031659 100302172 NR_031659 ENSG00000221240 MIR1258 MIRN1258|hsa-mir-1258|mir-1258 microRNA 1258 ncRNA 284.667-3 chr11 42811583 42812063 + 1 NA Intergenic Intergenic 457546 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 133.667-22 chr12 27413495 27413639 + 1 NA intron (NM_001248003, intron 12 of 14) L1M1|LINE|L1 33067 NR_109975 101928646 Hs.434269 NR_109975 ENSG00000245311 ARNTL2-AS1 - ARNTL2 antisense RNA 1 ncRNA 288.667-8 chr5 15677804 15678195 + 1 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -62997 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 154.333-24 chr14 83560689 83560906 + 1 NA Intergenic MER91B|DNA|hAT-Tip100 918165 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 230.833-14 chr22 27502853 27503190 + 1 NA Intergenic L2b|LINE|L2 192370 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 245.5-7 chr16 54741736 54742006 + 1 NA Intergenic Intergenic 106362 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 144.333-3 chr1 40471151 40471436 + 1 NA Intergenic L1MB2|LINE|L1 -5997 NM_198494 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 115.667-115 chr8 34788249 34788472 + 1 NA intron (NR_125746, intron 1 of 3) intron (NR_125746, intron 1 of 3) 4439 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 210.167-2 chr1 78623725 78624069 + 1 NA intron (NM_006820, intron 1 of 8) MLT2B3|LTR|ERVL 3449 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 165.333 chr1 31049441 31049774 + 1 NA intron (NM_001020658, intron 2 of 21) AluSx1|SINE|Alu 16110 NM_001020658 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1|SCA47 pumilio RNA binding family member 1 protein-coding 208.167-17 chr3 185111179 185111542 + 1 NA intron (NM_001025266, intron 1 of 1) L1MEc|LINE|L1 41700 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 137.667-53 chr2 72743145 72743504 + 1 NA intron (NR_135774, intron 1 of 19) L2a|LINE|L2 82709 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 196.667-42 chr5 329824 330051 + 1 NA intron (NM_020731, intron 1 of 11) L1M2|LINE|L1 25761 NM_020731 57491 Hs.50823 NM_020731 ENSG00000286169 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 148.5-42 chr2 175150512 175150749 + 1 NA intron (NR_045770, intron 2 of 15) Charlie19a|DNA|hAT-Charlie 17079 NR_030630 100126350 NR_030630 ENSG00000215973 MIR933 MIRN933|hsa-mir-933|mir-933 microRNA 933 ncRNA 237.5-12 chr17 76768355 76768664 + 1 NA intron (NM_001353019, intron 10 of 13) intron (NM_001353019, intron 10 of 13) -30535 NR_110837 101928514 Hs.617206 NR_110837 ENSG00000267065 LINC02080 - long intergenic non-protein coding RNA 2080 ncRNA 222.333-24 chr4 110817083 110817312 + 1 NA Intergenic Intergenic 43450 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 132.667-9 chr1 238581389 238581587 + 1 NA Intergenic Intergenic -95471 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 159.333-4 chr1 198925862 198926064 + 1 NA intron (NR_040073, intron 1 of 2) intron (NR_040073, intron 1 of 2) 11466 NR_040073 100131234 Hs.711077 NR_040073 MIR181A1HG - MIR181A1 host gene ncRNA 255.333-6 chr14 28887059 28887380 + 1 NA Intergenic L1MC4a|LINE|L1 -101432 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 186.5 chr1 46308808 46309129 + 1 NA intron (NM_001297566, intron 1 of 2) MER74B|LTR|ERVL 5270 NM_001297566 7388 Hs.481571 NM_006004 ENSG00000173660 UQCRH QCR6|UQCR8 ubiquinol-cytochrome c reductase hinge protein protein-coding 132.667-87 chr7 17227793 17228030 + 1 NA Intergenic MIRb|SINE|MIR -70741 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 234.333-28 chr5 35344722 35344974 + 1 NA Intergenic AluJr4|SINE|Alu -114361 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 285.333-6 chr2 72610809 72611228 + 1 NA intron (NR_135774, intron 6 of 19) L1MC3|LINE|L1 215015 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 207.333-11 chr11 41022928 41023202 + 1 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 436571 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 245.5-21 chr6 54222605 54223154 + 1 NA intron (NM_138569, intron 10 of 12) L1MA9|LINE|L1 -85562 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 207.333-37 chr5 10261983 10262478 + 1 NA intron (NM_012073, intron 8 of 10) intron (NM_012073, intron 8 of 10) 11693 NM_001306155 22948 Hs.1600 NM_012073 ENSG00000150753 CCT5 CCT-epsilon|CCTE|HEL-S-69|PNAS-102|TCP-1-epsilon chaperonin containing TCP1 subunit 5 protein-coding 284.167-19 chr9 30150333 30150948 + 1 NA Intergenic L1M1|LINE|L1 257814 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 117.333-106 chr8 60898854 60899212 + 1 NA Intergenic MamRep137|DNA|TcMar-Tigger 68715 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 145.333-74 chr6 114888666 114888935 + 1 NA Intergenic Intergenic 755035 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 197.833-15 chr2 48831420 48831766 + 1 NA Intergenic L1PA12|LINE|L1 -75869 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 238.667-8 chr14 90028203 90028688 + 1 NA intron (NM_001330205, intron 14 of 14) intron (NM_001330205, intron 14 of 14) -33549 NM_022054 56659 Hs.510191 NM_022054 ENSG00000152315 KCNK13 K2p13.1|THIK-1|THIK1 potassium two pore domain channel subfamily K member 13 protein-coding 326.5-3 chr1 182831589 182831944 + 1 NA Intergenic Intergenic -7581 NR_033302 1660 Hs.191518 NM_001357 ENSG00000135829 DHX9 DDX9|LKP|NDH2|NDHII|RHA DExH-box helicase 9 protein-coding 175.667-70 chr8 90788302 90788486 + 1 NA Intergenic Intergenic -3381 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 325.667-7 chr2 177123941 177124469 + 1 NA Intergenic MER5A|DNA|hAT-Charlie 88206 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 198.5-27 chr3 88253688 88253925 + 1 NA Intergenic MER65A|LTR|ERV1 -84650 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 151.667-27 chr17 59690579 59690764 + 1 NA exon (NM_004859, exon 31 of 32) exon (NM_004859, exon 31 of 32) 16927 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 201.667-11 chr13 60635093 60635357 + 1 NA Intergenic L1MA8|LINE|L1 -37730 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 234.667-19 chr2 126309019 126309397 + 1 NA Intergenic L1ME3D|LINE|L1 -191223 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 158.833-59 chr7 47958427 47958605 + 1 NA Intergenic L1MA6|LINE|L1 -10025 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 159.167-22 chr15 64278951 64279375 + 1 NA intron (NM_001329607, intron 2 of 11) L1ME3|LINE|L1 77010 NM_001329606 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 332.167-4 chr18 31146599 31147010 + 1 NA intron (NM_024421, intron 6 of 15) intron (NM_024421, intron 6 of 15) 16052 NM_004948 1823 Hs.567260 NM_004948 ENSG00000134765 DSC1 CDHF1|DG2/DG3 desmocollin 1 protein-coding 137.5-39 chr18 55361890 55362109 + 1 NA intron (NM_001348217, intron 5 of 18) intron (NM_001348217, intron 5 of 18) 39689 NM_001330605 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 152.667-38 chr18 66556017 66556219 + 1 NA intron (NM_001271028, intron 3 of 9) MIR3|SINE|MIR 47972 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 230.833-22 chr6 142592736 142592996 + 1 NA intron (NR_027312, intron 1 of 2) L1ME2z|LINE|L1 44970 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 275.333-4 chr1 95950000 95950360 + 1 NA Intergenic Intergenic -41888 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 318.5-11 chr6 48667453 48668065 + 1 NA Intergenic L1MC3|LINE|L1 -599070 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 157.5-40 chr3 99314014 99314234 + 1 NA Intergenic Intergenic -324470 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 152.333-30 chr2 18210937 18211181 + 1 NA Intergenic Intergenic 332392 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 150.167-60 chr6 161738030 161738193 + 1 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 267134 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 224.667-24 chr4 6530076 6530473 + 1 NA intron (NM_001206994, intron 2 of 9) LTR72B|LTR|ERV1 25341 NM_001206995 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 155.333-54 chr2 210826929 210827130 + 1 NA Intergenic L1PB3|LINE|L1 209458 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 216.333-9 chr11 20219323 20219640 + 1 NA Intergenic Tigger13a|DNA|TcMar-Tigger -59006 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 188.333-57 chr7 83434324 83434523 + 1 NA intron (NM_001178129, intron 4 of 16) intron (NM_001178129, intron 4 of 16) 207008 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 115.333-93 chr6 88045942 88046131 + 1 NA Intergenic Intergenic -1805 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 187.167-20 chr2 125443808 125444010 + 1 NA Intergenic Intergenic 674076 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 174.333-74 chr8 140406335 140406730 + 1 NA intron (NM_001321646, intron 4 of 21) L4_A_Mam|LINE|RTE-X 51212 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 128.667-60 chr2 13265839 13266040 + 1 NA Intergenic LTR51|LTR|ERV1 -258926 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 424.667-2 chr1 81081223 81081744 + 1 NA Intergenic L2c|LINE|L2 -224709 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 349.833-3 chr14 72762814 72763535 + 1 NA intron (NM_001280544, intron 2 of 9) L1ME1|LINE|L1 129475 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 238.667-32 chr8 71168932 71169356 + 1 NA Intergenic Tigger3a|DNA|TcMar-Tigger 187562 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 163.667-54 chr4 36110262 36110456 + 1 NA intron (NR_146894, intron 26 of 32) intron (NR_146894, intron 26 of 32) 133580 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 175.5-65 chr8 142593348 142593548 + 1 NA Intergenic L1MD|LINE|L1 21031 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 145.667-58 chr21 23084879 23085267 + 1 NA Intergenic Intergenic 5789 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 164.333-67 chr6 47798659 47799010 + 1 NA intron (NR_033806, intron 4 of 6) intron (NR_033806, intron 4 of 6) 11766 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 214.333-42 chr7 15482302 15482741 + 1 NA intron (NM_001004320, intron 3 of 12) L1M5|LINE|L1 79494 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 281.5-10 chr6 37926198 37926666 + 1 NA intron (NM_021943, intron 1 of 5) MLT1D|LTR|ERVL-MaLR 106705 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 131.167-14 chr11 37807967 37808151 + 1 NA Intergenic Intergenic -130542 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 221.667-21 chr3 29402707 29403150 + 1 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 121616 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 274.5-12 chr4 47788807 47789195 + 1 NA intron (NM_006587, intron 2 of 21) intron (NM_006587, intron 2 of 21) -42344 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 170.833-34 chr4 107912963 107913227 + 1 NA 3' UTR (NM_001136258, exon 7 of 7) 3' UTR (NM_001136258, exon 7 of 7) -18454 NM_183075 113612 Hs.109087 NM_183075 ENSG00000155016 CYP2U1 P450TEC|SPG49|SPG56 cytochrome P450 family 2 subfamily U member 1 protein-coding 168.5-34 chr21 29249948 29250218 + 1 NA intron (NR_027072, intron 1 of 1) L1PA16|LINE|L1 -48839 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 161.167-16 chr14 42230181 42230391 + 1 NA Intergenic Intergenic 623430 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 233.5-25 chr8 81060735 81061217 + 1 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 51092 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 146.5-90 chr8 120754150 120754424 + 1 NA intron (NM_021021, intron 1 of 6) AluJb|SINE|Alu -6966 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 121.333-62 chr3 35539159 35539324 + 1 NA Intergenic L2|LINE|L2 -100284 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 178.5-24 chr13 62122842 62123173 + 1 NA Intergenic Intergenic -89275 NR_125787 103752583 Hs.578048 NR_125787 LINC01075 - long intergenic non-protein coding RNA 1075 ncRNA 136.5-74 chr5 77561044 77561282 + 1 NA Intergenic Intergenic -68847 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 137.333-38 chr17 66551644 66551817 + 1 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -134876 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 273.667-16 chr22 28550292 28550737 + 1 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 90645 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 266.833-5 chr4 93301718 93302021 + 1 NA intron (NM_001286838, intron 7 of 14) A-rich|Low_complexity|Low_complexity -526884 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 253.667-7 chr17 58502603 58502959 + 1 NA intron (NM_004687, intron 15 of 18) L1ME3G|LINE|L1 -14373 NM_001080439 124535 Hs.380061 NM_001080439 ENSG00000176160 HSF5 HSF 5|HSTF 5 heat shock transcription factor 5 protein-coding 142.333-20 chr11 68090333 68090487 + 1 NA intron (NM_001277, intron 2 of 11) intron (NM_001277, intron 2 of 11) 30978 NM_001277 1119 Hs.77221 NM_001277 ENSG00000110721 CHKA CHK|CK|CKI|EK choline kinase alpha protein-coding 250.5-6 chr16 83161085 83161564 + 1 NA intron (NM_001220490, intron 3 of 12) intron (NM_001220490, intron 3 of 12) -171026 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 193.5-37 chr4 31855553 31855919 + 1 NA Intergenic L1P4a|LINE|L1 -141643 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 137.833-13 chr14 40999157 40999401 + 1 NA intron (NR_109758, intron 3 of 3) intron (NR_109758, intron 3 of 3) 44568 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 326.167-10 chr9 71321095 71321475 + 1 NA intron (NM_001366143, intron 1 of 25) L2|LINE|L2 125686 NM_001366141 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 172.333-14 chr11 10559482 10559813 + 1 NA intron (NM_006691, intron 5 of 5) intron (NM_006691, intron 5 of 5) 9018 NM_006691 10894 Hs.655332 NM_006691 ENSG00000133800 LYVE1 CRSBP-1|HAR|LYVE-1|XLKD1 lymphatic vessel endothelial hyaluronan receptor 1 protein-coding 167.5-58 chr6 157175587 157175795 + 1 NA intron (NM_001363725, intron 9 of 17) intron (NM_001363725, intron 9 of 17) 139264 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 232.167-21 chr5 116147284 116147821 + 1 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) 62090 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 228.333-31 chr6 64077648 64077993 + 1 NA intron (NM_001292009, intron 32 of 43) intron (NM_001292009, intron 32 of 43) 270984 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 173.833-9 chr10 97181034 97181491 + 1 NA intron (NR_037909, intron 11 of 14) intron (NR_037909, intron 11 of 14) 4697 NM_003061 6585 Hs.632082 NM_003061 ENSG00000187122 SLIT1 MEGF4|SLIL1|SLIT-1|SLIT3 slit guidance ligand 1 protein-coding 242.667-5 chr10 123774450 123774823 + 1 NA intron (NM_198148, intron 7 of 13) intron (NM_198148, intron 7 of 13) 108281 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 126.5-60 chr3 110321330 110321533 + 1 NA Intergenic LTR88b|LTR|Gypsy? 718603 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 163.667-2 chr1 22820633 22820900 + 1 NA intron (NM_004442, intron 3 of 15) MIRb|SINE|MIR 42460 NR_036214 100422914 NR_036214 ENSG00000264014 MIR4253 - microRNA 4253 ncRNA 258.5-5 chr10 89355291 89355762 + 1 NA Intergenic MER41B|LTR|ERV1 -22530 NM_001010987 439996 Hs.500491 NM_001010987 ENSG00000204010 IFIT1B IFIT1L|bA149I23.6 interferon induced protein with tetratricopeptide repeats 1B protein-coding 151.333-33 chr17 43487308 43487662 + 1 NA intron (NM_001322217, intron 1 of 21) AluJo|SINE|Alu 3510 NR_136228 1659 Hs.463105 NM_004941 ENSG00000067596 DHX8 DDX8|Dhr2|HRH1|PRP22|PRPF22 DEAH-box helicase 8 protein-coding 133.333-129 chr9 102740068 102740333 + 1 NA Intergenic Intergenic 220563 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 233.833-3 chr13 92005291 92005736 + 1 NA intron (NM_004466, intron 6 of 7) L2a|LINE|L2 346694 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 243.667-23 chr3 176717160 176717675 + 1 NA Intergenic Intergenic -81885 NR_109968 100505547 Hs.253350 NR_109968 LINC01208 - long intergenic non-protein coding RNA 1208 ncRNA 120.667-16 chr11 23834947 23835233 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -415900 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 175.667-20 chr15 88494688 88495032 + 1 NA Intergenic Intergenic 27152 NM_001321973 64963 Hs.111286 NM_022839 ENSG00000181991 MRPS11 HCC-2|MRP-S11|S11mt mitochondrial ribosomal protein S11 protein-coding 207.833-33 chr7 49596635 49597060 + 1 NA Intergenic Intergenic -176791 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 262.667-19 chr2 37270585 37271124 + 1 NA non-coding (NR_146402, exon 11 of 11) non-coding (NR_146402, exon 11 of 11) 39196 NM_001083946 55471 Hs.433466 NM_018607 ENSG00000003509 NDUFAF7 C2orf56|MidA|PRO1853 NADH:ubiquinone oxidoreductase complex assembly factor 7 protein-coding 141.833-47 chr8 98335661 98335854 + 1 NA Intergenic Intergenic -41522 NR_135747 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 124.667-85 chr4 33098514 33098779 + 1 NA Intergenic Intergenic 747608 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 219.333-15 chr15 36551722 36552225 + 1 NA Intergenic Intergenic -27653 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 176.5-71 chrX 71457817 71458116 + 1 NA intron (NR_104395, intron 34 of 38) intron (NR_104395, intron 34 of 38) 34483 NR_002226 27160 Hs.721806 NR_002226 ENSG00000243468 INGX ING1-like|ING2 inhibitor of growth family, X-linked (pseudogene) pseudo 176.333-60 chr8 126213664 126213912 + 1 NA Intergenic L2c|LINE|L2 -111707 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 204.167-19 chr3 35705139 35705765 + 1 NA intron (NM_016300, intron 9 of 19) intron (NM_016300, intron 9 of 19) 24512 NM_198399 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 124.667-114 chr7 39272484 39272800 + 1 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 56492 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 120.333-37 chr12 131816624 131816870 + 1 NA Intergenic Intergenic -11646 NM_016155 4326 Hs.709245 NM_016155 ENSG00000198598 MMP17 MMP-17|MT4-MMP|MT4MMP|MTMMP4 matrix metallopeptidase 17 protein-coding 283.5-17 chr9 69382708 69383120 + 1 NA intron (NM_001127608, intron 6 of 10) intron (NM_001127608, intron 6 of 10) 53589 NM_004816 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 233.333-22 chr2 119901938 119902198 + 1 NA intron (NM_002830, intron 10 of 26) L1MCb|LINE|L1 -111009 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 193.333-52 chr8 8440767 8441301 + 1 NA Intergenic AluSp|SINE|Alu -54595 NR_163138 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 139.5-51 chr5 31055137 31055468 + 1 NA Intergenic AluJb|SINE|Alu -138384 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 320.333-6 chr4 144190503 144190884 + 1 NA Intergenic AluJo|SINE|Alu -49975 NM_002099 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 201.5-24 chr21 26911783 26912118 + 1 NA Intergenic Intergenic -42011 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 115.333-2 chr1 77073835 77074040 + 1 NA Intergenic L1MC4a|LINE|L1 13794 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 138.5-79 chr8 95755688 95755862 + 1 NA intron (NR_038205, intron 2 of 2) intron (NR_038205, intron 2 of 2) 192573 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 162.5-62 chr5 180033840 180034129 + 1 NA intron (NM_001280801, intron 2 of 7) L1MB7|LINE|L1 -18587 NR_029885 442908 NR_029885 ENSG00000198995 MIR340 MIRN340|hsa-mir-340|mir-340 microRNA 340 ncRNA 133.333-53 chr2 48619756 48619996 + 1 NA intron (NM_001193487, intron 1 of 7) intron (NM_001193487, intron 1 of 7) 2020 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 132.667-77 chr5 29587583 29587774 + 1 NA Intergenic L1M2|LINE|L1 -191702 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 215.333-16 chr15 70967775 70967990 + 1 NA intron (NM_017691, intron 9 of 15) intron (NM_017691, intron 9 of 15) 75439 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 271.833-6 chr15 59922624 59923221 + 1 NA Intergenic MIRc|SINE|MIR -81389 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 190.5-26 chr17 69376133 69376615 + 1 NA Intergenic AluSc|SINE|Alu -38323 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 211.5-32 chr7 90438833 90439179 + 1 NA Intergenic Intergenic -30633 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 203.5-7 chr1 238846973 238847337 + 1 NA Intergenic Intergenic -361138 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 184.5-31 chr3 42618644 42618889 + 1 NA intron (NM_001349126, intron 3 of 18) intron (NM_001349126, intron 3 of 18) -17688 NM_001201572 9117 Hs.445892 NM_004206 ENSG00000093183 SEC22C SEC22L3 SEC22 homolog C, vesicle trafficking protein protein-coding 219.5-28 chr4 45641137 45641524 + 1 NA Intergenic L1MC4|LINE|L1 482724 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 220.667-38 chr7 10891619 10891872 + 1 NA Intergenic Intergenic 48408 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 145.5-72 chr7 77310245 77310437 + 1 NA TTS (NM_001350899) TTS (NM_001350899) -104857 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 152.5-65 chr8 28520295 28520574 + 1 NA intron (NM_017412, intron 3 of 7) MER5B|DNA|hAT-Charlie -15252 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 166.5-23 chr17 32924729 32925092 + 1 NA Intergenic MER51-int|LTR|ERV1 -3000 NM_001301746 26022 Hs.3447 NM_015544 ENSG00000006042 TMEM98 TADA1 transmembrane protein 98 protein-coding 254.833-2 chr12 62648804 62649108 + 1 NA intron (NM_020700, intron 9 of 9) MER113|DNA|hAT-Charlie 45270 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 182.333-38 chr20 720892 721207 + 1 NA Intergenic MIRb|SINE|MIR -45247 NM_033129 85508 Hs.355284 NM_033129 ENSG00000215397 SCRT2 ZNF898B scratch family transcriptional repressor 2 protein-coding 179.333-38 chr3 57027727 57028075 + 1 NA intron (NM_001128615, intron 2 of 12) intron (NM_001128615, intron 2 of 12) -32763 NM_181727 353324 Hs.129794 NM_181727 ENSG00000186451 SPATA12 SRG5 spermatogenesis associated 12 protein-coding 133.333-62 chr20 14157437 14157597 + 1 NA intron (NM_001351663, intron 3 of 17) L1MA4A|LINE|L1 162001 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 170.833-40 chr6 27745011 27745181 + 1 NA Intergenic L1MB3|LINE|L1 -16648 NR_038929 100131289 Hs.200573 NR_038929 LOC100131289 - uncharacterized LOC100131289 ncRNA 208.333-41 chr8 79690703 79691003 + 1 NA Intergenic Intergenic 75622 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 149.5-64 chr8 46036096 46036484 + 1 NA Intergenic Intergenic 581353 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 178.333-32 chr20 59633577 59633863 + 1 NA intron (NM_001281507, intron 1 of 12) intron (NM_001281507, intron 1 of 12) 5111 NM_001281507 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 145.167-10 chr10 86467965 86468142 + 1 NA intron (NM_001318328, intron 8 of 18) intron (NM_001318328, intron 8 of 18) 53731 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 288.167-7 chr21 27820584 27821196 + 1 NA Intergenic L1PA16|LINE|L1 98511 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 117.333-13 chr10 21390872 21391104 + 1 NA Intergenic AluSz|SINE|Alu -18038 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 140.5-37 chr2 99129066 99129318 + 1 NA intron (NM_001349013, intron 1 of 16) intron (NM_001349013, intron 1 of 16) 11988 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 158.333-34 chr17 3650416 3650795 + 1 NA intron (NM_001031681, intron 5 of 12) intron (NM_001031681, intron 5 of 12) 13845 NM_004937 1497 Hs.187667 NM_004937 ENSG00000040531 CTNS CTNS-LSB|PQLC4|SLC66A4 cystinosin, lysosomal cystine transporter protein-coding 267.333-13 chr2 31907918 31908345 + 1 NA intron (NM_001137602, intron 4 of 7) intron (NM_001137602, intron 4 of 7) 102533 NM_001137602 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 165.333-28 chr17 61929547 61929787 + 1 NA Intergenic MER112|DNA|hAT-Charlie -1685 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 212.667-51 chr9 101964127 101964411 + 1 NA Intergenic Intergenic -225689 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 130.667-27 chr14 57739227 57739466 + 1 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 125653 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 150.167-68 chr8 131984218 131984498 + 1 NA intron (NR_136616, intron 15 of 23) intron (NR_136616, intron 15 of 23) 67585 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 207.167-7 chr12 8967951 8968355 + 1 NA intron (NR_137427, intron 1 of 2) L1MEc|LINE|L1 18109 NM_001329102 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 158.667-32 chr17 65495829 65496052 + 1 NA Intergenic Intergenic 38399 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 188.333-49 chr5 124900076 124900354 + 1 NA Intergenic Intergenic -136616 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 131.5-82 chr8 76679394 76679529 + 1 NA intron (NR_024360, intron 1 of 3) intron (NR_024360, intron 1 of 3) -1786 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 249.333-23 chr6 90491449 90491890 + 1 NA Intergenic L1MB3|LINE|L1 95403 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 234.667-31 chr6 125250341 125250677 + 1 NA intron (NM_001318907, intron 4 of 4) intron (NM_001318907, intron 4 of 4) 46798 NM_001318907 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 150.667-82 chr6 50167608 50167830 + 1 NA Intergenic HAL1M8|LINE|L1 -117790 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 136.333-22 chr12 66343859 66344207 + 1 NA TTS (NM_033647) TTS (NM_033647) 41488 NR_135080 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 163.5-47 chr3 176049880 176050205 + 1 NA Intergenic Intergenic -194509 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 120.667-23 chr11 127654670 127654790 + 1 NA Intergenic Intergenic 383660 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 144.833-57 chr5 13144788 13144952 + 1 NA Intergenic Intergenic -111984 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 117.167-8 chr10 60644119 60644240 + 1 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) -71223 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 280.333-11 chr2 30515449 30515921 + 1 NA intron (NM_001304445, intron 3 of 7) intron (NM_001304445, intron 3 of 7) 68439 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 227.667-18 chr3 156559205 156559565 + 1 NA Intergenic Intergenic -4185 NM_007107 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 233.5-19 chr5 54304746 54305084 + 1 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 5658 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 241.667-2 chr1 237283137 237283525 + 1 NA intron (NM_001035, intron 2 of 104) (CTTTCT)n|Simple_repeat|Simple_repeat -187788 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 175.333-15 chr14 51900824 51901177 + 1 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 17571 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 228.5-19 chr3 47566155 47566548 + 1 NA intron (NM_001206944, intron 3 of 3) intron (NM_001206944, intron 3 of 3) 12514 NM_006574 10675 Hs.45127 NM_006574 ENSG00000114646 CSPG5 NGC chondroitin sulfate proteoglycan 5 protein-coding 206.833-9 chr19 19069034 19069612 + 1 NA intron (NM_178526, intron 1 of 7) intron (NM_178526, intron 1 of 7) 5329 NM_178526 284439 Hs.303669 NM_178526 ENSG00000181035 SLC25A42 MECREN solute carrier family 25 member 42 protein-coding 187.667-13 chr12 82218004 82218224 + 1 NA Intergenic Intergenic 140273 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 138.333-21 chr11 109740745 109740966 + 1 NA Intergenic Intergenic 318665 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 131.333-9 chr10 53248304 53248442 + 1 NA Intergenic Intergenic -476673 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 113.5-2 chr1 80270895 80271267 + 1 NA Intergenic Intergenic -264674 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 119.833-84 chr8 98338767 98339150 + 1 NA Intergenic Intergenic -44723 NR_135747 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 156.167-53 chr6 122296057 122296271 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -103387 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 140.833-56 chr7 1502751 1503023 + 1 NA intron (NM_001080453, intron 3 of 47) intron (NM_001080453, intron 3 of 47) 1502 NM_001080453 26173 Hs.532188 NM_001080453 ENSG00000164880 INTS1 INT1|NET28 integrator complex subunit 1 protein-coding 173.333-3 chr1 83747659 83748112 + 1 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 112661 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 134.333-16 chr10 108472595 108472885 + 1 NA Intergenic Intergenic -403447 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 154.5-47 chr3 147630085 147630271 + 1 NA Intergenic Intergenic 208851 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 176.333-49 chr5 42773428 42773667 + 1 NA intron (NM_001134848, intron 4 of 8) Charlie7|DNA|hAT-Charlie 16729 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 186.333-29 chr19 51075310 51075671 + 1 NA Intergenic L1MA9|LINE|L1 7366 NR_163144 43847 Hs.283925 NM_022046 ENSG00000129437 KLK14 KLK-L6 kallikrein related peptidase 14 protein-coding 160.5-28 chr2 200953844 200954037 + 1 NA intron (NR_033915, intron 4 of 16) AluJb|SINE|Alu 9720 NR_033915 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 258.167-7 chr16 73652420 73652709 + 1 NA Intergenic L1ME3B|LINE|L1 265759 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 129.833-5 chr10 47224339 47224669 + 1 NA Intergenic L1ME4a|LINE|L1 -75693 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 199.5-34 chr5 41220082 41220436 + 1 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) -6727 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 147.5-3 chr1 73729324 73729504 + 1 NA intron (NR_146300, intron 3 of 3) intron (NR_146300, intron 3 of 3) 54735 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 317.5-10 chr3 113194649 113195026 + 1 NA Intergenic Intergenic -16720 NM_001301867 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 143.333-80 chr6 163884781 163885055 + 1 NA Intergenic HAL1|LINE|L1 -213434 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 125.833-70 chr5 38551564 38551767 + 1 NA intron (NM_002310, intron 1 of 19) intron (NM_002310, intron 1 of 19) 4981 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 262.667-6 chr11 48048686 48049095 + 1 NA intron (NM_001098503, intron 1 of 8) MIRb|SINE|MIR -47892 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 133.333-32 chr13 83824966 83825225 + 1 NA Intergenic Intergenic 57298 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 327.833-6 chr7 3493730 3494360 + 1 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 192793 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 204.667-48 chr8 137692739 137693024 + 1 NA Intergenic Intergenic -279293 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 194.333-43 chr8 116450803 116451161 + 1 NA Intergenic MER126|DNA|DNA -125923 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 173.333-71 chr9 20153446 20153663 + 1 NA Intergenic MIRb|SINE|MIR 257684 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 159.333-11 chr10 61415937 61416119 + 1 NA intron (NR_134508, intron 5 of 6) L3|LINE|CR1 -36611 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 143.5-43 chr2 223706812 223707040 + 1 NA Intergenic MER58A|DNA|hAT-Charlie -104565 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 188.333-58 chr8 14165390 14165614 + 1 NA intron (NM_139167, intron 4 of 7) intron (NM_139167, intron 4 of 7) 535812 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 138.667-72 chr4 130278079 130278246 + 1 NA Intergenic Intergenic -98199 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 194.333-14 chr15 26266558 26266890 + 1 NA Intergenic Intergenic 150911 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 246.833-2 chr12 90119546 90119821 + 1 NA Intergenic L1MA4A|LINE|L1 171990 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 183.333-2 chr1 45869190 45869550 + 1 NA intron (NM_001324321, intron 1 of 28) intron (NM_001324321, intron 1 of 28) 5022 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 145.333-92 chr8 125102105 125102276 + 1 NA intron (NM_001349486, intron 2 of 7) intron (NM_001349486, intron 2 of 7) 10330 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 190.667-34 chr3 107126459 107126658 + 1 NA intron (NR_028303, intron 2 of 3) L2|LINE|L2 114080 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 208.5-36 chr4 104533892 104534286 + 1 NA intron (NR_125926, intron 1 of 9) intron (NR_125926, intron 1 of 9) -39195 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 154.5-66 chr7 4055206 4055435 + 1 NA intron (NM_152744, intron 19 of 44) L1MD|LINE|L1 -74365 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 334.5-5 chr14 47589976 47590656 + 1 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 84638 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 248.5-12 chr3 85781340 85781760 + 1 NA intron (NM_001256504, intron 3 of 10) intron (NM_001256504, intron 3 of 10) 46500 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 146.667-59 chr21 30616229 30616545 + 1 NA promoter-TSS (NM_181615) promoter-TSS (NM_181615) -38 NM_181615 337975 Hs.553697 NM_181615 ENSG00000244624 KRTAP20-1 KAP20.1 keratin associated protein 20-1 protein-coding 157.5-69 chr8 137903905 137904146 + 1 NA intron (NR_161374, intron 2 of 7) MER72|LTR|ERV1 179520 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 202.333-2 chr1 177210203 177210662 + 1 NA intron (NM_021165, intron 1 of 7) intron (NM_021165, intron 1 of 7) 39474 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 220.5-5 chr10 6643415 6643755 + 1 NA Intergenic Intergenic 8515 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 240.667-32 chr4 109828198 109828443 + 1 NA intron (NM_006583, intron 1 of 6) MIRc|SINE|MIR 348 NM_006583 10692 Hs.658310 NM_006583 ENSG00000180245 RRH - retinal pigment epithelium-derived rhodopsin homolog protein-coding 156.333-42 chr18 29353174 29353458 + 1 NA Intergenic L1PA16|LINE|L1 -945594 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 270.833-2 chr10 45171423 45171800 + 1 NA intron (NR_033891, intron 3 of 7) intron (NR_033891, intron 3 of 7) 7597 NR_036112 100422988 NR_036112 ENSG00000263476 MIR3156-1 mir-3156-1 microRNA 3156-1 ncRNA 136.333-23 chr12 67434236 67434426 + 1 NA Intergenic Intergenic 8228 NR_146500 102724433 NR_146500 ENSG00000256172 LINC02420 - long intergenic non-protein coding RNA 2420 ncRNA 243.167-6 chr17 58686302 58686680 + 1 NA intron (NM_031272, intron 1 of 31) L2|LINE|L2 5564 NM_198393 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 200.667-52 chr8 126619469 126619815 + 1 NA Intergenic Intergenic -61164 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 321.833-7 chr3 9692002 9692619 + 1 NA intron (NM_001077526, intron 17 of 17) intron (NM_001077526, intron 17 of 17) -11523 NM_153635 151835 Hs.121335 NM_153635 ENSG00000144550 CPNE9 - copine family member 9 protein-coding 160.5-36 chr4 38968578 38968902 + 1 NA intron (NM_001303228, intron 6 of 6) intron (NM_001303228, intron 6 of 6) 63669 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 162.833-38 chr5 64610137 64610618 + 1 NA non-coding (NR_073511, exon 5 of 5) non-coding (NR_073511, exon 5 of 5) 34727 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 225.333-13 chr18 60325371 60325785 + 1 NA Intergenic Intergenic 47197 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 161.167-36 chr2 225917823 225918204 + 1 NA Intergenic Intergenic -224781 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 270.667-9 chr2 58859724 58860095 + 1 NA intron (NR_033873, intron 3 of 13) intron (NR_033873, intron 3 of 13) 339156 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 145.333-17 chr11 38463909 38464122 + 1 NA Intergenic Intergenic 182341 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 302.667-2 chr1 106356599 106357206 + 1 NA Intergenic L2a|LINE|L2 -328649 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 203.333-26 chr21 34226068 34226533 + 1 NA Intergenic L2|LINE|L2 45623 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 178.5-75 chr8 120158258 120158493 + 1 NA intron (NM_021110, intron 3 of 47) intron (NM_021110, intron 3 of 47) 33273 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 245.333-3 chr11 132875382 132875738 + 1 NA intron (NM_001319104, intron 1 of 6) AluSp|SINE|Alu 68077 NM_001319106 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 197.5-7 chr10 8766311 8766658 + 1 NA Intergenic Intergenic -131505 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 176.5-16 chr12 109654638 109654866 + 1 NA Intergenic MIRb|SINE|MIR -59073 NM_032829 84915 Hs.661785 NM_032829 ENSG00000139438 FAM222A C12orf34 family with sequence similarity 222 member A protein-coding 207.167-9 chr12 42503537 42503973 + 1 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) -19745 NM_001144882 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 149.333-76 chr5 76380888 76381334 + 1 NA Intergenic Intergenic -22174 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 225.667-11 chr17 61551078 61551387 + 1 NA Intergenic Intergenic 39987 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 133.5-18 chr12 14565604 14565820 + 1 NA intron (NM_024829, intron 1 of 10) L2b|LINE|L2 -2020 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 228.667 chr1 59244771 59245023 + 1 NA Intergenic L1M5|LINE|L1 -51916 NM_001350793 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 167.667-70 chr5 42006916 42007262 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR 81808 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 253.333-5 chr11 116136403 116136806 + 1 NA Intergenic Intergenic -376404 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 241.333-25 chr6 70061693 70062069 + 1 NA intron (NM_001858, intron 14 of 50) intron (NM_001858, intron 14 of 50) 195325 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 201.5-15 chr2 19648991 19649649 + 1 NA Intergenic Intergenic -219534 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 229.167-26 chr4 79816875 79817194 + 1 NA Intergenic L1MB8|LINE|L1 -10437 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 141.333-63 chr3 176116889 176117073 + 1 NA Intergenic L1MC5a|LINE|L1 -127570 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 126.833-43 chr3 27402579 27402774 + 1 NA intron (NM_001258380, intron 14 of 23) AluSx|SINE|Alu -33216 NM_152534 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 325.667-10 chr7 3629524 3630047 + 1 NA intron (NM_152744, intron 2 of 44) L1MEc|LINE|L1 328533 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 137.5-9 chr1 226868848 226868996 + 1 NA Intergenic L1MB5|LINE|L1 -1650 NM_012486 5664 Hs.25363 NM_000447 ENSG00000143801 PSEN2 AD3L|AD4|CMD1V|PS2|STM2 presenilin 2 protein-coding 135.667-111 chr9 2423772 2424050 + 1 NA Intergenic L2b|LINE|L2 -197876 NM_001322225 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 247.333-17 chr4 7221061 7221344 + 1 NA intron (NM_020777, intron 1 of 26) intron (NM_020777, intron 1 of 26) 28664 NM_020777 57537 Hs.479099 NM_020777 ENSG00000184985 SORCS2 - sortilin related VPS10 domain containing receptor 2 protein-coding 230.833-3 chr10 116875942 116876330 + 1 NA exon (NM_001242699, exon 11 of 14) exon (NM_001242699, exon 11 of 14) -26414 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 141.333-98 chr8 136813601 136813762 + 1 NA intron (NR_147196, intron 4 of 5) MIR|SINE|MIR 282883 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 297.333 chr1 190428366 190428849 + 1 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 47403 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 182.5-16 chr17 53605776 53606110 + 1 NA Intergenic AluSp|SINE|Alu -216984 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 135.333-63 chr5 60166488 60166695 + 1 NA intron (NM_001349243, intron 2 of 16) L1MA8|LINE|L1 206072 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 114.5-43 chr18 73721868 73722037 + 1 NA Intergenic Intergenic 397011 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 246.667-5 chr10 98720562 98720876 + 1 NA intron (NM_021828, intron 5 of 11) L1ME4c|LINE|L1 203849 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 233.333-43 chr8 117948512 117948859 + 1 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -27772 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 137.833-40 chr5 129282698 129282835 + 1 NA Intergenic L1P4|LINE|L1 114381 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 207.5-21 chr2 217577644 217578158 + 1 NA intron (NR_026597, intron 2 of 12) intron (NR_026597, intron 2 of 12) 178692 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 308.167-4 chr5 68291130 68291733 + 1 NA intron (NM_181504, intron 1 of 9) intron (NM_181504, intron 1 of 9) 767 NM_181504 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 117.333-97 chr6 145146654 145146879 + 1 NA Intergenic Intergenic 540111 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 209.167-33 chr8 78165436 78165749 + 1 NA Intergenic L1MB3|LINE|L1 -350748 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 241.333 chr1 88258868 88259207 + 1 NA Intergenic X6B_LINE|LINE|CR1 -425107 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 161.5-53 chr8 121058831 121059007 + 1 NA Intergenic L1MC1|LINE|L1 -246873 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 115.5-24 chr11 114405056 114405188 + 1 NA intron (NM_016090, intron 3 of 4) L2a|LINE|L2 4456 NM_001286048 10179 Hs.7527 NM_016090 ENSG00000076053 RBM7 - RNA binding motif protein 7 protein-coding 243.333-15 chr3 35377609 35378072 + 1 NA intron (NR_110817, intron 1 of 3) MER63B|DNA|hAT-Blackjack 16183 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 193.667-37 chr4 33489548 33489860 + 1 NA Intergenic Intergenic 550189 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 169.333-67 chr7 108312857 108313035 + 1 NA intron (NM_001371151, intron 1 of 26) intron (NM_001371151, intron 1 of 26) 15580 NM_001371179 129.5-86 chr8 89930323 89930560 + 1 NA Intergenic AluJb|SINE|Alu 27871 NM_001126111 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 206.333-2 chr10 33683550 33683947 + 1 NA Intergenic Intergenic 88932 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 299.167-11 chr8 131916159 131916834 + 1 NA promoter-TSS (NM_001323556) promoter-TSS (NM_001323556) -277 NM_001323557 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 179.5-16 chr17 64190858 64191093 + 1 NA intron (NM_018469, intron 4 of 11) intron (NM_018469, intron 4 of 11) 39759 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 162.833-29 chr22 39064638 39064945 + 1 NA Intergenic AluSx1|SINE|Alu -12214 NM_001349436 60489 Hs.660143 NM_021822 ENSG00000239713 APOBEC3G A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1 apolipoprotein B mRNA editing enzyme catalytic subunit 3G protein-coding 269.833-11 chr2 147900145 147900531 + 1 NA intron (NM_001278579, intron 5 of 11) intron (NM_001278579, intron 5 of 11) 55309 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 198.333-49 chr9 97063061 97063405 + 1 NA Intergenic AluY|SINE|Alu 18712 NR_002942 340508 Hs.680438 NR_002942 ENSG00000228376 GAS2L1P2 - growth arrest specific 2 like 1 pseudogene 2 pseudo 284.167-18 chr8 101356505 101357034 + 1 NA Intergenic Intergenic -12124 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 139.667-79 chr5 126459802 126460007 + 1 NA intron (NR_146196, intron 1 of 14) L1ME4b|LINE|L1 -5246 NM_001146322 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 132.333-40 chr15 96595624 96595768 + 1 NA Intergenic Intergenic 185958 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 184.667-40 chr5 29403849 29404125 + 1 NA Intergenic L1M1|LINE|L1 -8011 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 327.333-5 chr17 57530090 57530593 + 1 NA intron (NM_001322250, intron 7 of 13) Charlie4z|DNA|hAT-Charlie -6744 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 147.667-19 chr13 106962175 106962464 + 1 NA Intergenic Intergenic 308439 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 167.333-72 chr9 101695382 101695707 + 1 NA intron (NM_133445, intron 1 of 8) intron (NM_133445, intron 1 of 8) 43036 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 177.833-13 chr15 69215825 69216268 + 1 NA intron (NM_001324092, intron 2 of 3) intron (NM_001324092, intron 2 of 3) 55411 NM_001324092 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 297.833-2 chr12 126522615 126523095 + 1 NA Intergenic L1MA9|LINE|L1 -73528 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 159.833-4 chr1 66038962 66039253 + 1 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) 11611 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 264.333-16 chr7 50255395 50255714 + 1 NA Intergenic L1M6|LINE|L1 -48510 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 147.5-87 chr9 29313580 29313822 + 1 NA Intergenic Intergenic -100100 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 204.333-39 chr4 38957722 38958065 + 1 NA Intergenic Intergenic 74516 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 280.667-10 chr17 60850181 60850692 + 1 NA intron (NM_001330413, intron 7 of 25) AluSq2|SINE|Alu 172585 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 216.167-18 chr3 111715379 111715865 + 1 NA intron (NM_153268, intron 3 of 3) MIRc|SINE|MIR -16874 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 261.667-29 chr5 143164152 143164467 + 1 NA intron (NM_001349547, intron 20 of 21) intron (NM_001349547, intron 20 of 21) -28191 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 172.667-80 chr8 137707774 137708075 + 1 NA Intergenic L1ME1|LINE|L1 -294336 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 225.167-20 chr3 9572763 9573321 + 1 NA Intergenic AluSg7|SINE|Alu -19220 NM_198560 375323 Hs.56782 NM_198560 ENSG00000156959 LHFPL4 GARLH4 LHFPL tetraspan subfamily member 4 protein-coding 166.333-81 chr8 133716626 133716869 + 1 NA Intergenic L2b|LINE|L2 -32681 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 260.333-20 chr8 119205740 119206254 + 1 NA Intergenic Intergenic -2366 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 277.667-9 chr4 22116004 22116448 + 1 NA Intergenic Intergenic -167475 NM_147182 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 138.5-84 chr8 126425148 126425354 + 1 NA Intergenic Intergenic 99756 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 124.333-44 chr2 49156659 49156830 + 1 NA Intergenic L1ME3F|LINE|L1 -2217 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 243.667-34 chr7 27313446 27313758 + 1 NA Intergenic L2a|LINE|L2 -66373 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 216.167-20 chr4 32457276 32457597 + 1 NA Intergenic AluSq|SINE|Alu 106398 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 217.667-46 chr7 38638348 38638755 + 1 NA Intergenic L1MC4|LINE|L1 -6984 NM_139316 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 295.333-2 chr12 20547764 20548251 + 1 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) -23857 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 164.667-45 chr3 48037079 48037399 + 1 NA intron (NM_002375, intron 1 of 18) intron (NM_002375, intron 1 of 18) 51609 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 154.333-69 chr6 149470633 149470801 + 1 NA intron (NM_207360, intron 2 of 5) MIR3|SINE|MIR 14297 NM_207360 340152 Hs.632618 NM_207360 ENSG00000178199 ZC3H12D C6orf95|MCPIP4|TFL|dJ281H8.1|p34 zinc finger CCCH-type containing 12D protein-coding 166.667-9 chr10 99713026 99713380 + 1 NA 3' UTR (NM_001320975, exon 8 of 8) 3' UTR (NM_001320975, exon 8 of 8) -19031 NM_015960 51076 Hs.16606 NM_015960 ENSG00000119929 CUTC CGI-32 cutC copper transporter protein-coding 364.333-4 chr8 27763105 27763560 + 1 NA intron (NR_156432, intron 2 of 7) L1M5|LINE|L1 9308 NR_130762 55246 Hs.445512 NM_018246 ENSG00000147419 CCDC25 - coiled-coil domain containing 25 protein-coding 225.5-6 chr10 74723230 74723611 + 1 NA Intergenic AluSz|SINE|Alu -101835 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 234.333-30 chr5 96343069 96343473 + 1 NA intron (NR_130776, intron 3 of 4) intron (NR_130776, intron 3 of 4) 88888 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 174.5-23 chr2 178178678 178178971 + 1 NA Intergenic Intergenic -15657 NM_001201482 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 115.5-52 chr2 63552652 63552890 + 1 NA intron (NR_148705, intron 1 of 16) intron (NR_148705, intron 1 of 16) 35706 NM_001354045 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 180.167-2 chr1 76603681 76603883 + 1 NA intron (NR_146056, intron 4 of 5) FRAM|SINE|Alu 175485 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 289.333-5 chr15 63797972 63798492 + 1 NA intron (NM_003922, intron 1 of 77) intron (NM_003922, intron 1 of 77) 35716 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 260.5-13 chr20 44497030 44497477 + 1 NA TTS (NM_006811) TTS (NM_006811) 21379 NM_024331 79183 Hs.283869 NM_024331 ENSG00000124120 TTPAL C20orf121 alpha tocopherol transfer protein like protein-coding 195.167-11 chr15 59039991 59040596 + 1 NA intron (NM_001270529, intron 2 of 13) AluJr|SINE|Alu 52147 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 130.667-75 chr5 71966076 71966354 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -141260 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 188.833-29 chr4 182466459 182466930 + 1 NA intron (NM_001080477, intron 3 of 27) MLT1C|LTR|ERVL-MaLR 223292 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 118.333-77 chr3 119026432 119026567 + 1 NA intron (NM_001353319, intron 1 of 7) Charlie1a|DNA|hAT-Charlie 8347 NM_001353325 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 304.667-11 chr2 196466749 196467120 + 1 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) -104757 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 213.667-40 chr7 77588976 77589565 + 1 NA intron (NM_001131009, intron 4 of 16) intron (NM_001131009, intron 4 of 16) 51227 NM_001131009 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 369.167-3 chr6 96373137 96374083 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -148196 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 116.167-24 chr15 67465483 67465611 + 1 NA intron (NM_001322473, intron 13 of 14) intron (NM_001322473, intron 13 of 14) 55426 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 254.833-7 chr2 71759346 71759811 + 1 NA Intergenic L1MD2|LINE|L1 292879 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 189.667-2 chr1 232057649 232057918 + 1 NA Intergenic Intergenic 131949 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 114.5-32 chr14 40201813 40201971 + 1 NA Intergenic L1MB8|LINE|L1 -752819 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 248.667-19 chr3 112952898 112953371 + 1 NA intron (NM_138806, intron 1 of 7) L1M1|LINE|L1 21969 NM_138939 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 169.333-31 chr18 9817803 9818195 + 1 NA intron (NM_006868, intron 5 of 6) intron (NM_006868, intron 5 of 6) -67974 NM_032243 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 137.667-90 chr7 18545964 18546243 + 1 NA intron (NR_135835, intron 3 of 3) intron (NR_135835, intron 3 of 3) 36833 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 207.5-7 chr11 84692880 84693167 + 1 NA intron (NM_001351274, intron 5 of 26) MIRb|SINE|MIR 27919 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 164.5-47 chr5 140050596 140050833 + 1 NA Intergenic MIR|SINE|MIR -7415 NM_013982 9542 Hs.408515 NM_004883 ENSG00000158458 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 181.5-6 chr10 90586443 90586707 + 1 NA Intergenic MIRb|SINE|MIR -45770 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 127.333-10 chr10 17763586 17763843 + 1 NA intron (NM_001098844, intron 1 of 3) intron (NM_001098844, intron 1 of 3) 11513 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 190.333-2 chr1 44491656 44491958 + 1 NA intron (NM_001319957, intron 1 of 13) AluSz6|SINE|Alu -53686 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 122.5-32 chr14 53977067 53977246 + 1 NA Intergenic Intergenic -20265 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 134.5-13 chr10 56894571 56894828 + 1 NA Intergenic Intergenic 409860 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 287.167-8 chr2 34209113 34209496 + 1 NA intron (NR_126403, intron 4 of 5) L1PA13|LINE|L1 142078 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 138.5-41 chr2 121681952 121682227 + 1 NA intron (NR_037857, intron 2 of 3) HERVIP10FH-int|LTR|ERV1 32100 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 187.5-4 chr1 207651885 207652194 + 1 NA intron (NM_175710, intron 1 of 11) L2c|LINE|L2 6906 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 133.667-21 chr12 1961214 1961416 + 1 NA intron (NR_135060, intron 6 of 10) intron (NR_135060, intron 6 of 10) -24739 NR_036546 100271702 Hs.737031 NR_036546 ENSG00000235049 LINC00940 - long intergenic non-protein coding RNA 940 ncRNA 253.333-9 chr15 85373913 85374332 + 1 NA Intergenic Intergenic -6474 NR_106993 102465803 NR_106993 ENSG00000284160 MIR7706 hsa-mir-7706 microRNA 7706 ncRNA 165.667-10 chr10 32923102 32923564 + 1 NA intron (NM_002211, intron 7 of 15) intron (NM_002211, intron 7 of 15) 12225 NM_033668 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 134.333-41 chr15 78881050 78881282 + 1 NA intron (NM_006791, intron 3 of 11) intron (NM_006791, intron 3 of 11) 8177 NM_001265605 10933 Hs.374503 NM_006791 ENSG00000185787 MORF4L1 Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 131.5-18 chr12 10261494 10261787 + 1 NA intron (NM_001351060, intron 2 of 8) intron (NM_001351060, intron 2 of 8) 22679 NM_001351060 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 135.667-94 chr5 155415495 155415748 + 1 NA Intergenic MIR|SINE|MIR 401866 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 206.833-6 chr17 62343293 62343607 + 1 NA Intergenic L1ME4a|LINE|L1 -26768 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 207.333 chr1 2791191 2791438 + 1 NA intron (NM_001242672, intron 1 of 7) intron (NM_001242672, intron 1 of 7) 9554 NM_001242672 100287898 Hs.632363 NM_001242672 ENSG00000215912 TTC34 - tetratricopeptide repeat domain 34 protein-coding 180.833-20 chr2 54403736 54403953 + 1 NA Intergenic Intergenic -52483 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 209.333-43 chr5 117035072 117035299 + 1 NA Intergenic Intergenic -272976 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 127.167-83 chr8 4419889 4420096 + 1 NA exon (NM_033225, exon 3 of 70) exon (NM_033225, exon 3 of 70) 574922 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 142.833-50 chr4 56357107 56357319 + 1 NA intron (NM_001286672, intron 5 of 10) MLT1A0|LTR|ERVL-MaLR 30278 NM_181806 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 141.333-25 chr13 99684516 99684805 + 1 NA intron (NR_104592, intron 1 of 9) intron (NR_104592, intron 1 of 9) 6311 NR_046526 100874063 Hs.577064 NR_046526 ENSG00000227659 CLYBL-AS2 - CLYBL antisense RNA 2 ncRNA 147.833-26 chr17 44812958 44813294 + 1 NA intron (NM_001080383, intron 1 of 2) AluSx|SINE|Alu 17161 NM_005497 10052 Hs.712052 NM_005497 ENSG00000182963 GJC1 CX45|GJA7 gap junction protein gamma 1 protein-coding 182.333-58 chr6 82002183 82002508 + 1 NA intron (NR_149135, intron 3 of 3) L1MA10|LINE|L1 -63924 NR_149134 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 175.667-56 chr6 56160143 56160536 + 1 NA intron (NM_030820, intron 9 of 29) MIR|SINE|MIR -68677 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 154.667-30 chr16 83423513 83423691 + 1 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -84744 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 194.333-17 chr17 48862651 48862974 + 1 NA intron (NM_005831, intron 12 of 12) intron (NM_005831, intron 12 of 12) -29975 NM_001002027 516 Hs.80986 NM_005175 ENSG00000159199 ATP5MC1 ATP5A|ATP5G|ATP5G1 ATP synthase membrane subunit c locus 1 protein-coding 171.667-52 chr3 87547865 87548264 + 1 NA Intergenic MER4E|LTR|ERV1 -244642 NM_001322208 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 289.167-12 chr2 150032960 150033519 + 1 NA Intergenic Intergenic -174048 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 206.667-18 chr14 65782054 65782389 + 1 NA Intergenic Intergenic 311119 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 184.5-6 chr10 53037226 53037552 + 1 NA Intergenic Intergenic -265689 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 130.333-77 chr5 137231778 137232009 + 1 NA intron (NM_004598, intron 3 of 10) L1MD2|LINE|L1 103696 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 186.333-32 chr2 33363538 33363890 + 1 NA intron (NM_206943, intron 29 of 33) intron (NM_206943, intron 29 of 33) -54802 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 131.5-92 chrX 23657745 23657943 + 1 NA Intergenic AluJr|SINE|Alu -9649 NM_006406 10549 Hs.83383 NM_006406 ENSG00000123131 PRDX4 AOE37-2|AOE372|HEL-S-97n|PRX-4 peroxiredoxin 4 protein-coding 197.5-10 chr10 62323597 62323896 + 1 NA Intergenic L1PREC2|LINE|L1 -50411 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 162.333-67 chr7 6460836 6461108 + 1 NA TTS (NM_006854) TTS (NM_006854) -12960 NM_001142936 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 307.333 chr10 51077947 51078385 + 1 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 3679 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 162.5-33 chr2 128985940 128986111 + 1 NA Intergenic MIRb|SINE|MIR 121425 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 197.5-47 chr6 38485257 38485640 + 1 NA intron (NM_001172418, intron 5 of 10) Tigger1|DNA|TcMar-Tigger 3852 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 301.5-10 chr4 44683447 44684031 + 1 NA intron (NM_001345869, intron 5 of 15) intron (NM_001345869, intron 5 of 15) 5319 NM_021927 60558 Hs.546419 NM_021927 ENSG00000151806 GUF1 EF-4|EF4|EIEE40 GUF1 homolog, GTPase protein-coding 284.167-14 chr4 35715357 35716419 + 1 NA Intergenic L1MA4A|LINE|L1 528051 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 274.5-13 chr4 76041330 76041738 + 1 NA intron (NM_001130017, intron 1 of 9) MER33|DNA|hAT-Charlie -5464 NM_001302123 6373 Hs.632592 NM_005409 ENSG00000169248 CXCL11 H174|I-TAC|IP-9|IP9|SCYB11|SCYB9B|b-R1 C-X-C motif chemokine ligand 11 protein-coding 199.333-42 chr8 118503168 118503603 + 1 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -117616 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 215.5-24 chr2 171194869 171195201 + 1 NA intron (NM_001136554, intron 1 of 20) intron (NM_001136554, intron 1 of 20) -34142 NM_012290 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 260.333-10 chr17 74576011 74576605 + 1 NA Intergenic Intergenic -8371 NM_001302809 146723 Hs.350775 NM_152460 C17orf77 - chromosome 17 open reading frame 77 protein-coding 237.833-14 chr5 57268257 57268658 + 1 NA Intergenic AluJo|SINE|Alu 54383 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 177.333-17 chr12 96593102 96593376 + 1 NA intron (NM_001306084, intron 24 of 67) intron (NM_001306084, intron 24 of 67) 103662 NM_001367885 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 265.667-10 chr17 72383471 72383922 + 1 NA Intergenic MER58A|DNA|hAT-Charlie 40885 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 185.333-61 chr8 101957355 101957573 + 1 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -26968 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 126.5-86 chr8 109697362 109697542 + 1 NA Intergenic Intergenic -5661 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 335.333-9 chr9 16351056 16351599 + 1 NA Intergenic L4_A_Mam|LINE|RTE-X -75014 NM_001364979 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 219.667-4 chr10 103537048 103537307 + 1 NA intron (NM_004210, intron 1 of 5) L1MB3|LINE|L1 -19735 NR_120675 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 120.167-53 chr22 45487020 45487154 + 1 NA Intergenic MER83B-int|LTR|ERV1 -15796 NM_006487 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 357.667 chr14 58457708 58458121 + 1 NA exon (NM_001364701, exon 11 of 31) exon (NM_001364701, exon 11 of 31) 18233 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 147.333-78 chr7 9044042 9044251 + 1 NA Intergenic L1ME1|LINE|L1 -590124 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 275.667-26 chr8 83963202 83963608 + 1 NA Intergenic Intergenic -219382 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 262.667-11 chr16 69513160 69513479 + 1 NA Intergenic L1ME2z|LINE|L1 52549 NR_031719 100302119 NR_031719 ENSG00000223109 MIR1538 MIRN1538|hsa-mir-1538 microRNA 1538 ncRNA 153.667-56 chr4 46948781 46949005 + 1 NA intron (NM_001204267, intron 7 of 7) intron (NM_001204267, intron 7 of 7) -39648 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 159.333-64 chr5 25126533 25126897 + 1 NA intron (NR_147006, intron 4 of 4) intron (NR_147006, intron 4 of 4) 63941 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 150.333-35 chr13 51410031 51410392 + 1 NA intron (NM_012141, intron 4 of 17) L1ME1|LINE|L1 42825 NM_001039937 26512 Hs.439440 NM_012141 ENSG00000102786 INTS6 DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2 integrator complex subunit 6 protein-coding 139.167-24 chr15 58898360 58898664 + 1 NA intron (NR_135042, intron 6 of 18) intron (NR_135042, intron 6 of 18) 35167 NR_135043 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 278.667-17 chr5 159504295 159504694 + 1 NA Intergenic MIRb|SINE|MIR -38218 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 201.333-11 chr11 11369765 11370277 + 1 NA intron (NM_198516, intron 6 of 10) MIRb|SINE|MIR -16771 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 223.333-20 chr2 198615968 198616215 + 1 NA Intergenic Intergenic -240994 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 125.333-52 chr15 74313924 74314115 + 1 NA intron (NM_025055, intron 11 of 18) L2b|LINE|L2 -4540 NM_001287181 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 123.167-99 chr9 32501878 32502082 + 1 NA intron (NM_014314, intron 1 of 17) L1MB8|LINE|L1 24216 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIG1|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 160.833-49 chr9 104013438 104013789 + 1 NA Intergenic Intergenic 13904 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 257.833-13 chr7 12641066 12641466 + 1 NA intron (NR_156701, intron 11 of 14) L2|LINE|L2 -45561 NM_212460 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 211.5-19 chr3 184862789 184863070 + 1 NA exon (NM_015303, exon 15 of 47) exon (NM_015303, exon 15 of 47) 50422 NR_146116 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 248.5-5 chr2 64371786 64372130 + 1 NA Intergenic Intergenic -31110 NR_106995 102465833 NR_106995 ENSG00000264297 MIR4433B hsa-mir-4433b microRNA 4433b ncRNA 237.5-5 chr11 103402757 103403165 + 1 NA intron (NM_001377, intron 84 of 88) intron (NM_001377, intron 84 of 88) 293535 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 163.667-9 chr10 67420176 67420421 + 1 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -16888 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 204.5-27 chr4 104327378 104327990 + 1 NA Intergenic Intergenic -163281 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 122.333-66 chr22 19371543 19371782 + 1 NA intron (NM_003325, intron 15 of 24) L1MB7|LINE|L1 60071 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 125.833-19 chr12 74242510 74242785 + 1 NA intron (NR_038300, intron 3 of 6) intron (NR_038300, intron 3 of 6) 49984 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 222.5-30 chr8 68395003 68395260 + 1 NA intron (NR_146187, intron 1 of 13) intron (NR_146187, intron 1 of 13) -63640 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 203.667-33 chr7 25820636 25820947 + 1 NA Intergenic Intergenic -30672 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 124.5-6 chr1 227804428 227804651 + 1 NA Intergenic L1MEc|LINE|L1 -11178 NM_183062 339501 Hs.97604 NM_183062 ENSG00000185888 PRSS38 MPN2 serine protease 38 protein-coding 122.667-18 chr12 19915333 19915558 + 1 NA Intergenic Intergenic -99240 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 175.667-77 chrX 87836210 87836463 + 1 NA Intergenic L1M4c|LINE|L1 318534 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 154.333-5 chr1 215554883 215555248 + 1 NA Intergenic L1MA4A|LINE|L1 -12239 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 230.333-32 chr8 35636961 35637212 + 1 NA intron (NM_001322818, intron 4 of 16) intron (NM_001322818, intron 4 of 16) 73234 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 210.833-19 chr2 226670174 226670595 + 1 NA Intergenic L2a|LINE|L2 -11591 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 372.667-4 chr2 88527438 88528051 + 1 NA intron (NM_152670, intron 3 of 3) L1ME3D|LINE|L1 3095 NM_152670 200523 Hs.132104 NM_152670 ENSG00000172073 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 188.5-16 chr14 65328115 65328439 + 1 NA Intergenic AluSx1|SINE|Alu 6906 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 265.833-10 chr2 204524731 204525156 + 1 NA Intergenic Intergenic -20532 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 258.5-21 chr7 19990507 19991009 + 1 NA intron (NR_110114, intron 3 of 5) intron (NR_110114, intron 3 of 5) 149668 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 189.333-42 chr5 16287711 16287908 + 1 NA Intergenic L2a|LINE|L2 107568 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 249.5-19 chr22 28451200 28451654 + 1 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -8442 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 175.5-25 chr2 166900571 166900862 + 1 NA intron (NM_152381, intron 1 of 10) L1MDa|LINE|L1 12229 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 153.667-61 chr5 128403059 128403234 + 1 NA intron (NM_001999, intron 8 of 64) intron (NM_001999, intron 8 of 64) 135099 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 178.833-17 chr2 42229865 42230257 + 1 NA intron (NM_001145076, intron 1 of 21) intron (NM_001145076, intron 1 of 21) -59830 NR_110584 102723824 Hs.639826 NR_110584 LOC102723824 - uncharacterized LOC102723824 ncRNA 203.5-16 chr17 48046841 48047198 + 1 NA Intergenic Intergenic -1340 NM_001330262 4779 Hs.514284 NM_003204 ENSG00000082641 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2 like 1 protein-coding 243.5-26 chr7 14539715 14540250 + 1 NA intron (NM_001350717, intron 19 of 24) Charlie25|DNA|hAT-Charlie 301468 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 226.333-26 chr3 163128766 163129181 + 1 NA Intergenic L1PB1|LINE|L1 174328 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 144.833-5 chr1 117857959 117858103 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 71590 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 163.333-18 chr13 29318305 29318522 + 1 NA intron (NM_001033602, intron 4 of 13) intron (NM_001033602, intron 4 of 13) -110247 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 186.5-62 chr7 10031475 10031794 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL 397364 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 338.333 chr14 64596156 64596745 + 1 NA Intergenic L1ME4a|LINE|L1 46489 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 114.5-87 chr7 140094479 140094671 + 1 NA intron (NM_030647, intron 17 of 19) intron (NM_030647, intron 17 of 19) -30854 NR_130117 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding 125.667-2 chr1 40734022 40734210 + 1 NA intron (NM_001142590, intron 6 of 14) AluJr4|SINE|Alu -4720 NM_001308114 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y subunit gamma protein-coding 286.333-3 chr16 9969075 9969537 + 1 NA intron (NM_001134408, intron 2 of 13) L2|LINE|L2 212761 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 246.167-5 chr11 34479078 34479486 + 1 NA 3' UTR (NM_001243081, exon 6 of 6) 3' UTR (NM_001243081, exon 6 of 6) 32442 NM_198381 2001 Hs.11713 NM_001422 ENSG00000135374 ELF5 ESE2 E74 like ETS transcription factor 5 protein-coding 200.333-31 chr5 117320632 117321087 + 1 NA Intergenic Intergenic -94653 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 154.5-52 chr4 63415290 63415528 + 1 NA Intergenic Intergenic 994041 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 116.667-36 chr15 24737012 24737360 + 1 NA Intergenic L1MCa|LINE|L1 61792 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 160.333-35 chr22 34979155 34979466 + 1 NA intron (NR_138042, intron 1 of 4) AluSz|SINE|Alu 18606 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 226.333-24 chr3 119976387 119976865 + 1 NA intron (NM_002093, intron 2 of 11) L1MB7|LINE|L1 108022 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 151.667-34 chr2 17835796 17835997 + 1 NA Intergenic L2a|LINE|L2 19436 NM_001105569 343930 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 276.5-12 chr4 85000044 85000455 + 1 NA intron (NR_152782, intron 2 of 3) intron (NR_152782, intron 2 of 3) 32765 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 258.333-2 chr1 65676201 65676818 + 1 NA Intergenic L1MEd|LINE|L1 -116001 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 220.5-39 chr8 140828189 140828666 + 1 NA intron (NR_148037, intron 9 of 34) intron (NR_148037, intron 9 of 34) -95774 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 201.833-24 chr7 135777360 135777586 + 1 NA Intergenic L1ME3E|LINE|L1 -28660 NM_001369697 389558 Hs.55200 NM_205855 ENSG00000189320 FAM180A UNQ1940 family with sequence similarity 180 member A protein-coding 309.833-5 chr7 107433295 107433777 + 1 NA intron (NM_181733, intron 6 of 20) L1M3|LINE|L1 -36521 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 120.167-17 chr14 59817255 59817570 + 1 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 53364 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 345.5-3 chr14 85409937 85410335 + 1 NA intron (NR_102737, intron 2 of 2) intron (NR_102737, intron 2 of 2) 16221 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 189.333-26 chr2 122853657 122853945 + 1 NA Intergenic Intergenic 219680 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 113.333-3 chr1 52318473 52318703 + 1 NA intron (NM_007324, intron 12 of 17) L1ME1|LINE|L1 47617 NM_032449 200014 Hs.591451 NM_032449 ENSG00000154222 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 225.167-26 chr6 63248387 63248865 + 1 NA Intergenic Intergenic 71351 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 241.667-41 chrX 98951558 98951928 + 1 NA Intergenic Intergenic -1387208 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 126.5-82 chr8 55293867 55294076 + 1 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 161350 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 150.5-39 chr2 32118651 32118830 + 1 NA intron (NM_001363875, intron 6 of 15) intron (NM_001363875, intron 6 of 15) -47101 NM_001193514 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 144.5-2 chr1 106163039 106163285 + 1 NA Intergenic Intergenic -134909 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 324.667-7 chr5 62903691 62904243 + 1 NA Intergenic MIRb|SINE|MIR 325148 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 144.5-19 chr12 54849609 54850063 + 1 NA Intergenic Intergenic -4680 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 176.667 chr1 48649269 48649543 + 1 NA intron (NM_001323575, intron 8 of 12) intron (NM_001323575, intron 8 of 12) 127485 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 213.333-22 chr21 24144305 24144609 + 1 NA Intergenic Intergenic 176920 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 277.833-2 chr17 17127248 17127649 + 1 NA intron (NM_201274, intron 4 of 23) intron (NM_201274, intron 4 of 23) 78885 NM_178836 201164 Hs.729079 NM_178836 ENSG00000179598 PLD6 ZUC phospholipase D family member 6 protein-coding 117.833-24 chr13 109940947 109941121 + 1 NA Intergenic L2|LINE|L2 -112251 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 271.167-14 chr5 68483770 68484199 + 1 NA Intergenic Intergenic 191407 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 245.833-18 chr9 25314620 25315060 + 1 NA Intergenic L1ME2|LINE|L1 364018 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 235.167-13 chr20 9009401 9009874 + 1 NA Intergenic Intergenic -59417 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 136.667-70 chr4 40744176 40744436 + 1 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat -5649 NM_001330648 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 155.333-59 chr21 24992395 24992727 + 1 NA intron (NR_046198, intron 2 of 3) HUERS-P3-int|LTR|ERV1 152011 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 187.5-22 chr2 102053722 102054093 + 1 NA Intergenic Intergenic -16483 NM_001288706 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 252.667-22 chr6 47216518 47217039 + 1 NA Intergenic L1PA4|LINE|L1 93127 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 222.333-8 chr13 65534119 65534421 + 1 NA Intergenic L1M5|LINE|L1 -331777 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 200.833-15 chr2 56125574 56125846 + 1 NA Intergenic Intergenic -35328 NR_135590 101927165 Hs.679803 NR_135590 LINC01813 - long intergenic non-protein coding RNA 1813 ncRNA 241.333-4 chr1 164467547 164467866 + 1 NA Intergenic Alu|SINE|Alu -91654 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 205.5-6 chr14 62556773 62557138 + 1 NA Intergenic Intergenic -416982 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 128.667-41 chr14 68595141 68595400 + 1 NA 3' UTR (NM_133509, exon 11 of 11) 3' UTR (NM_133509, exon 11 of 11) 33517 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 275.5-10 chr5 51940815 51941223 + 1 NA Intergenic MER77B|LTR|ERVL -67012 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 117.667-100 chr5 36617253 36617379 + 1 NA intron (NM_001289939, intron 2 of 8) intron (NM_001289939, intron 2 of 8) 10710 NM_001166695 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 211.667-29 chr3 185593209 185593436 + 1 NA intron (NM_021627, intron 2 of 16) FLAM_C|SINE|Alu 7027 NM_021627 59343 Hs.401388 NM_021627 ENSG00000163904 SENP2 AXAM2|SMT3IP2 SUMO specific peptidase 2 protein-coding 238.333-16 chr18 12887056 12887533 + 1 NA Intergenic L1ME3A|LINE|L1 -2959 NM_080423 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 219.5-19 chr18 77454639 77454993 + 1 NA Intergenic Intergenic 204968 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 248.333-4 chr15 33157142 33157605 + 1 NA intron (NM_001277313, intron 3 of 20) intron (NM_001277313, intron 3 of 20) 37341 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 168.333 chr1 62600473 62600795 + 1 NA intron (NM_014495, intron 2 of 6) intron (NM_014495, intron 2 of 6) 3114 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 154.333-74 chr8 66096793 66097037 + 1 NA intron (NM_001349432, intron 5 of 5) MIR|SINE|MIR -30214 NM_184086 84675 Hs.85524 NM_033058 ENSG00000147573 TRIM55 MURF-2|RNF29|muRF2 tripartite motif containing 55 protein-coding 142.5-3 chr1 79836576 79836822 + 1 NA Intergenic Intergenic -699056 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 208.5-37 chr4 170019196 170019556 + 1 NA intron (NM_021647, intron 1 of 2) AluJr4|SINE|Alu 7019 NM_021647 9848 Hs.593942 NM_021647 ENSG00000198948 MFAP3L NYD-sp9 microfibril associated protein 3 like protein-coding 134.5-32 chr14 73781936 73782157 + 1 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) 5162 NM_001043318 91748 Hs.594157 NM_194278 ENSG00000156030 ELMSAN1 C14orf117|C14orf43|LSR68|MIDEAS|c14_5541 ELM2 and Myb/SANT domain containing 1 protein-coding 137.167-28 chr18 72355847 72356174 + 1 NA Intergenic L1PA16|LINE|L1 188332 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 153.667-45 chr20 36548210 36548406 + 1 NA intron (NM_006097, intron 3 of 3) intron (NM_006097, intron 3 of 3) 6789 NM_006097 10398 Hs.504687 NM_006097 ENSG00000101335 MYL9 LC20|MLC-2C|MLC2|MRLC1|MYRL2 myosin light chain 9 protein-coding 174.833-38 chr5 40576110 40576561 + 1 NA Intergenic Intergenic -103580 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 262.5-14 chr3 101231668 101231986 + 1 NA intron (NM_016247, intron 15 of 18) intron (NM_016247, intron 15 of 18) 88748 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 213.333 chr1 17263288 17263652 + 1 NA intron (NM_016233, intron 3 of 15) L1MCa|LINE|L1 14372 NM_016233 51702 Hs.149195 NM_016233 ENSG00000142619 PADI3 PAD3|PDI3|UHS1 peptidyl arginine deiminase 3 protein-coding 190.333-40 chr21 31647957 31648533 + 1 NA Intergenic L1M4a1|LINE|L1 -11377 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 230.167-23 chr8 119608299 119609056 + 1 NA intron (NM_001330600, intron 8 of 25) MIR|SINE|MIR -15669 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 141.667-20 chr13 39467613 39467761 + 1 NA intron (NM_005780, intron 2 of 3) LTR48B|LTR|ERV1 135506 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 195.333-53 chr7 81063727 81064036 + 1 NA Intergenic Intergenic -141492 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 192.333-48 chr7 29476962 29477219 + 1 NA intron (NM_001293072, intron 6 of 12) intron (NM_001293072, intron 6 of 12) -2622 NM_001293079 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 125.833-23 chr15 62850725 62850898 + 1 NA Intergenic Intergenic 26854 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 191.667-21 chr2 83389506 83389859 + 1 NA Intergenic MER110|LTR|ERV1 -133132 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 223.5-17 chr3 3659988 3660288 + 1 NA Intergenic MSTD|LTR|ERVL-MaLR -139293 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 193.667-54 chr8 78434838 78435078 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -81382 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 240.167-12 chr3 47201552 47201824 + 1 NA intron (NR_033373, intron 2 of 6) intron (NR_033373, intron 2 of 6) 37318 NR_033373 285352 Hs.570631 NR_033373 KIF9-AS1 - KIF9 antisense RNA 1 ncRNA 143.333-4 chr1 229936030 229936207 + 1 NA Intergenic L1ME1|LINE|L1 -42210 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 135.333-82 chr8 56957908 56958100 + 1 NA TTS (NM_017813) TTS (NM_017813) 35863 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 219.333-35 chr6 37472636 37473051 + 1 NA intron (NM_015050, intron 16 of 23) intron (NM_015050, intron 16 of 23) 27050 NM_138493 154467 Hs.284207 NM_138493 ENSG00000198937 CCDC167 C6orf129|HSPC265 coiled-coil domain containing 167 protein-coding 131.333-93 chr7 54153426 54153580 + 1 NA Intergenic Intergenic -177194 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 159.667-46 chr2 46614624 46614917 + 1 NA intron (NM_173074, intron 2 of 6) intron (NM_173074, intron 2 of 6) 2271 NM_002643 5281 Hs.468415 NM_002643 ENSG00000151665 PIGF - phosphatidylinositol glycan anchor biosynthesis class F protein-coding 123.333-67 chr22 24771641 24771789 + 1 NA intron (NR_045648, intron 1 of 21) intron (NR_045648, intron 1 of 21) 3005 NR_045649 440822 Hs.448343 NM_001008496 ENSG00000184571 PIWIL3 HIWI3 piwi like RNA-mediated gene silencing 3 protein-coding 157.167-39 chr3 48282168 48282617 + 1 NA Intergenic Intergenic 9286 NR_134638 101060195 Hs.670746 NR_134638 FCF1P2 - FCF1 pseudogene 2 pseudo 186.333-7 chr1 214234358 214234632 + 1 NA Intergenic Intergenic -46664 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 190.667-5 chr10 67093370 67093812 + 1 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 81325 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 129.5-59 chr3 34140771 34141000 + 1 NA Intergenic L1MB2|LINE|L1 342255 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 123.333-38 chr14 71771150 71771323 + 1 NA Intergenic Intergenic -160935 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 149.667-20 chr14 58509936 58510203 + 1 NA intron (NM_001329944, intron 28 of 31) L1ME1|LINE|L1 70388 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 128.5-80 chr8 62011507 62011741 + 1 NA Intergenic Intergenic 121785 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 188.167-37 chr5 20453864 20454439 + 1 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 121562 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 173.667-59 chr7 4015175 4015454 + 1 NA intron (NM_152744, intron 16 of 44) intron (NM_152744, intron 16 of 44) -114371 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 240.333-23 chr5 129026158 129026472 + 1 NA intron (NM_001017372, intron 6 of 9) intron (NM_001017372, intron 6 of 9) 60827 NM_001017372 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 132.333-109 chr8 126058387 126058541 + 1 NA Intergenic L1M5|LINE|L1 -107267 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 142.167-10 chr10 52624279 52624561 + 1 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 130984 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 250.333-13 chr18 66306424 66306857 + 1 NA Intergenic L2a|LINE|L2 297450 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 205.833-9 chr12 45659862 45660165 + 1 NA Intergenic Intergenic 67908 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 405.5-3 chr14 22776245 22776942 + 1 NA intron (NM_001126105, intron 5 of 10) AluJb|SINE|Alu 9905 NM_005015 5018 Hs.151134 NM_005015 ENSG00000155463 OXA1L OXA1 OXA1L mitochondrial inner membrane protein protein-coding 277.167-4 chr3 104046018 104046506 + 1 NA Intergenic Intergenic -522146 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 237.5-7 chr12 106631707 106632066 + 1 NA intron (NM_001206691, intron 2 of 17) intron (NM_001206691, intron 2 of 17) 30738 NM_001206691 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 136.5-75 chr5 91159021 91159224 + 1 NA intron (NR_003149, intron 89 of 89) intron (NR_003149, intron 89 of 89) 155280 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 347.333-2 chr14 22019602 22019995 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR -348781 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 118.167-29 chr18 40058678 40058945 + 1 NA Intergenic Intergenic -7475 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 139.333-49 chr2 17216802 17217001 + 1 NA Intergenic AluSq2|SINE|Alu 301539 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 171.333-3 chr1 58410474 58410764 + 1 NA Intergenic Intergenic 136107 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 221.333-2 chr10 101884221 101884552 + 1 NA intron (NM_024541, intron 24 of 25) intron (NM_024541, intron 24 of 25) -40466 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 213.5-22 chr2 174896363 174896760 + 1 NA intron (NM_001025201, intron 6 of 12) intron (NM_001025201, intron 6 of 12) -48943 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 188.333-48 chr5 94545698 94546063 + 1 NA intron (NM_001145678, intron 2 of 20) L1M1|LINE|L1 72724 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 155.333-91 chr8 82122310 82122550 + 1 NA Intergenic Intergenic -280144 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 159.333-2 chr1 32499529 32499763 + 1 NA Intergenic L1MB5|LINE|L1 34574 NM_001145720 728116 Hs.647658 NM_001145720 ENSG00000273274 ZBTB8B ZNF916B zinc finger and BTB domain containing 8B protein-coding 229.333-27 chr4 154957937 154958370 + 1 NA Intergenic L1ME1|LINE|L1 176648 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 197.167-45 chr5 99854105 99854462 + 1 NA Intergenic Intergenic 320293 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 189.667-19 chr14 59049124 59049323 + 1 NA Intergenic L1M4c|LINE|L1 -139444 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 152.5-60 chr7 52584822 52585087 + 1 NA Intergenic Intergenic -450679 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 169.5-74 chr8 103455832 103456108 + 1 NA Intergenic L1MB5|LINE|L1 40584 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 156.5-59 chr3 71838892 71839068 + 1 NA Intergenic Intergenic -53832 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 190.5-44 chr5 137175783 137176110 + 1 NA intron (NM_004598, intron 3 of 10) intron (NM_004598, intron 3 of 10) 47749 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 219.167-27 chr9 133865430 133865721 + 1 NA intron (NM_001134398, intron 2 of 29) L1MEd|LINE|L1 -125620 NM_007101 1757 Hs.198003 NM_007101 ENSG00000123453 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding 357.667-3 chr2 211172680 211173357 + 1 NA Intergenic L1MC5|LINE|L1 555447 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 140.833-40 chr22 19344770 19345019 + 1 NA intron (NM_003325, intron 24 of 24) L1M3|LINE|L1 -53175 NM_001835 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 117.667-31 chr11 114449095 114449236 + 1 NA intron (NM_015523, intron 6 of 6) Tigger15a|DNA|TcMar-Tigger 9698 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 149.333-88 chr7 8033800 8033977 + 1 NA intron (NM_138426, intron 3 of 7) L1ME1|LINE|L1 65092 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 198.667-29 chr2 147430897 147431310 + 1 NA Intergenic L3|LINE|CR1 -413414 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 191.5-51 chr8 63810945 63811166 + 1 NA Intergenic MLT2B3|LTR|ERVL 41625 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 208.667-29 chr3 1974747 1975236 + 1 NA Intergenic L1MA4|LINE|L1 -123812 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 171.333-34 chr2 62412880 62413072 + 1 NA Intergenic FLAM_C|SINE|Alu 93219 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 158.667-48 chr2 187455855 187456286 + 1 NA Intergenic Intergenic -7818 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 284.5-9 chr22 48963814 48964224 + 1 NA Intergenic L1MDa|LINE|L1 97249 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 243.667-26 chr5 24843365 24843836 + 1 NA Intergenic Intergenic -3017 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 148.333-59 chr22 29445012 29445306 + 1 NA Intergenic L2a|LINE|L2 -3030 NR_002727 10740 Hs.167750 NR_002727 RFPL1S NCRNA00006|RFPL1-AS|RFPL1-AS1|RFPL1AS RFPL1 antisense RNA 1 ncRNA 145.667-71 chr4 37597112 37597375 + 1 NA intron (NM_001085399, intron 6 of 6) intron (NM_001085399, intron 6 of 6) 13010 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 121.667-44 chr18 42566103 42566262 + 1 NA intron (NR_046174, intron 6 of 9) intron (NR_046174, intron 6 of 9) 379514 NR_046174 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 271.333-16 chr5 26102789 26103156 + 1 NA Intergenic L1PA15|LINE|L1 912019 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 252.5-19 chr3 185420171 185420505 + 1 NA intron (NM_004721, intron 1 of 13) intron (NM_004721, intron 1 of 13) 57202 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 200.667-14 chr11 47320969 47321228 + 1 NA intron (NM_130476, intron 27 of 32) L1ME4b|LINE|L1 31604 NM_000256 4607 Hs.524906 NM_000256 ENSG00000134571 MYBPC3 CMD1MM|CMH4|FHC|LVNC10|MYBP-C myosin binding protein C, cardiac protein-coding 126.333-108 chr8 123448695 123448992 + 1 NA TTS (NR_133926) TTS (NR_133926) 32069 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 301.667-7 chr2 182948073 182948561 + 1 NA intron (NM_013436, intron 23 of 30) intron (NM_013436, intron 23 of 30) -81680 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 245.333-9 chr17 72109230 72109575 + 1 NA intron (NR_103738, intron 2 of 6) MIRb|SINE|MIR 6614 NR_103738 400618 Hs.657374 NR_103737 ENSG00000234899 SOX9-AS1 - SOX9 antisense RNA 1 ncRNA 177.333-46 chr4 53327977 53328348 + 1 NA intron (NM_152540, intron 2 of 8) L1MC4|LINE|L1 37899 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 149.333-60 chr20 57731652 57731827 + 1 NA Intergenic Intergenic -20203 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 197.667-22 chr15 71166759 71167081 + 1 NA non-coding (NR_120348, exon 4 of 4) non-coding (NR_120348, exon 4 of 4) 22139 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 171.833-30 chr3 98493522 98493774 + 1 NA Intergenic Intergenic -4033 NM_001004737 402135 Hs.632558 NM_001004737 ENSG00000231861 OR5K2 OR3-9 olfactory receptor family 5 subfamily K member 2 protein-coding 208.667-17 chr14 67269477 67269692 + 1 NA intron (NM_001256550, intron 1 of 14) intron (NM_001256550, intron 1 of 14) 28149 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 206.667-33 chr4 47266384 47266772 + 1 NA intron (NM_000812, intron 4 of 8) L1PB4|LINE|L1 197124 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 250.833-13 chr8 136751379 136751881 + 1 NA intron (NR_147196, intron 2 of 5) L1M3b|LINE|L1 220832 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 213.667-39 chr7 64457586 64457850 + 1 NA Intergenic L1MA6|LINE|L1 24025 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 188.667-36 chr3 85578396 85578788 + 1 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) 73533 NM_001256502 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 237.667-3 chr12 64360016 64360487 + 1 NA intron (NM_001099676, intron 1 of 10) AluSx1|SINE|Alu 30507 NM_001170633 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 205.5-19 chr2 25477729 25478275 + 1 NA intron (NM_033147, intron 10 of 19) HAL1|LINE|L1 -135412 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 120.5-81 chr7 80436750 80437017 + 1 NA Intergenic L1MC1|LINE|L1 -62444 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 160.833-31 chr3 28862514 28862895 + 1 NA Intergenic Intergenic 287426 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 144.667-77 chr4 164108603 164108821 + 1 NA intron (NM_001166373, intron 2 of 7) intron (NM_001166373, intron 2 of 7) 88999 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 256.833-11 chr5 50918660 50919168 + 1 NA Intergenic Intergenic 51273 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 232.833-11 chr2 211239356 211239656 + 1 NA Intergenic Intergenic 621935 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 185.667-30 chr22 30124591 30125041 + 1 NA intron (NM_001329457, intron 11 of 11) L1ME3B|LINE|L1 44352 NM_001329458 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 174.333-33 chr20 46831520 46831741 + 1 NA Intergenic MIRb|SINE|MIR -62994 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 145.333-95 chr8 126617522 126617820 + 1 NA Intergenic L3|LINE|CR1 -59193 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 133.167-26 chr17 60996484 60996788 + 1 NA intron (NM_001330413, intron 15 of 25) L2a|LINE|L2 318785 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 160.333-44 chr4 62900965 62901192 + 1 NA Intergenic Intergenic -739313 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 305.333-10 chr5 32970826 32971466 + 1 NA Intergenic Intergenic 23703 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 233.333-26 chr2 225702280 225702608 + 1 NA 3' UTR (NM_001371273, exon 8 of 8) 3' UTR (NM_001371273, exon 8 of 8) 301558 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 169.667-3 chr1 241715008 241715243 + 1 NA intron (NM_001367482, intron 9 of 27) intron (NM_001367482, intron 9 of 27) 62844 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 207.833-27 chr5 37362653 37363139 + 1 NA intron (NM_001278312, intron 3 of 33) intron (NM_001278312, intron 3 of 33) 8210 NM_004298 9631 Hs.547696 NM_004298 ENSG00000113569 NUP155 ATFB15|N155 nucleoporin 155 protein-coding 124.5-7 chr10 11539641 11539846 + 1 NA intron (NM_014688, intron 2 of 14) intron (NM_014688, intron 2 of 14) -7463 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 189.333-21 chr2 65808787 65809062 + 1 NA Intergenic L1M5|LINE|L1 -376325 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 126.333-24 chr13 44563735 44564087 + 1 NA intron (NM_183422, intron 1 of 2) intron (NM_183422, intron 1 of 2) -11985 NR_038381 641467 Hs.624196 NR_038381 ENSG00000278156 TSC22D1-AS1 - TSC22D1 antisense RNA 1 ncRNA 274.833-4 chr10 62373215 62373674 + 1 NA promoter-TSS (NM_199450) promoter-TSS (NM_199450) -713 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 119.667-32 chr18 21536063 21536285 + 1 NA exon (NM_052911, exon 10 of 12) exon (NM_052911, exon 10 of 12) 64530 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 222.333-5 chr1 227622337 227622685 + 1 NA intron (NR_102302, intron 2 of 5) MER4D|LTR|ERV1 58955 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 150.667-68 chr3 177884822 177884983 + 1 NA intron (NR_110826, intron 1 of 2) L2b|LINE|L2 68037 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 238.667-6 chr14 58057011 58057475 + 1 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 94970 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 186.667-8 chr10 112625989 112626388 + 1 NA intron (NM_001365712, intron 6 of 8) MIR3|SINE|MIR -7982 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 230.167-11 chr2 50056019 50056393 + 1 NA intron (NM_001330093, intron 19 of 22) intron (NM_001330093, intron 19 of 22) -82003 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 153.5-41 chr20 58437691 58437951 + 1 NA intron (NM_004738, intron 3 of 5) L1ME4a|LINE|L1 48592 NM_001195677 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 183.667-52 chr4 27525211 27525485 + 1 NA Intergenic Intergenic 307869 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 177.667-67 chr7 95635178 95635435 + 1 NA Intergenic Intergenic -38790 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 336.833 chr6 144852906 144853461 + 1 NA TTS (NM_007124) TTS (NM_007124) 447528 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 138.667-106 chr8 105243669 105243904 + 1 NA Intergenic Intergenic -74652 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 201.667-37 chr6 127286006 127286343 + 1 NA 5' UTR (NM_001242844, exon 4 of 5) 5' UTR (NM_001242844, exon 4 of 5) 19336 NM_001242850 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 393.833-3 chr6 53523935 53524490 + 1 NA intron (NM_001498, intron 1 of 15) MIRb|SINE|MIR 20889 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 196.667-57 chr8 138941248 138941562 + 1 NA Intergenic AluSc8|SINE|Alu -27364 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 206.5-15 chr2 63382659 63382865 + 1 NA intron (NR_148704, intron 11 of 18) intron (NR_148704, intron 11 of 18) 55245 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 130.5-68 chr5 156668423 156668588 + 1 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -181790 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 114.167 chr1 35377969 35378265 + 1 NA intron (NM_005095, intron 7 of 29) Tigger1|DNA|TcMar-Tigger -12040 NR_046659 100861513 Hs.585397 NR_046659 ENSG00000227409 ZMYM4-AS1 - ZMYM4 antisense RNA 1 ncRNA 225.167-30 chr8 104527565 104528162 + 1 NA intron (NM_001135703, intron 1 of 5) intron (NM_001135703, intron 1 of 5) -43398 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 253.333-16 chr5 60246550 60246924 + 1 NA intron (NM_001364599, intron 1 of 16) L1ME3E|LINE|L1 125926 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 161.5-15 chr17 9528884 9529103 + 1 NA intron (NR_033656, intron 2 of 5) intron (NR_033656, intron 2 of 5) 46827 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 173.333-30 chr2 36550359 36550590 + 1 NA 3' UTR (NM_016441, exon 17 of 17) 3' UTR (NM_016441, exon 17 of 17) 47694 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 216.167-5 chr10 79247983 79248485 + 1 NA intron (NM_020338, intron 7 of 24) intron (NM_020338, intron 7 of 24) -99235 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 141.667-48 chr2 82828371 82828685 + 1 NA Intergenic Intergenic -28275 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 163.833-12 chr11 33324120 33324322 + 1 NA intron (NM_001278162, intron 2 of 15) intron (NM_001278162, intron 2 of 15) -51887 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 162.667-39 chr2 60060468 60060835 + 1 NA Intergenic L1ME3F|LINE|L1 322385 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 269.5-9 chr16 76229572 76230003 + 1 NA Intergenic Intergenic -47614 NM_001322179 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 158.667-15 chr10 91867745 91867936 + 1 NA Intergenic L1MEd|LINE|L1 41646 NM_152429 143282 Hs.466120 NM_152429 ENSG00000174721 FGFBP3 C10orf13|FGF-BP3 fibroblast growth factor binding protein 3 protein-coding 358.667 chr17 61716357 61717027 + 1 NA intron (NM_032043, intron 16 of 19) L1MEc|LINE|L1 -125473 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 240.167-19 chr8 103835705 103835981 + 1 NA intron (NR_145711, intron 1 of 21) intron (NR_145711, intron 1 of 21) 16623 NM_001348502 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 136.333-92 chr8 40284684 40284827 + 1 NA Intergenic MIRb|SINE|MIR 58608 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 278.5-9 chr4 42274107 42274537 + 1 NA Intergenic AluSz|SINE|Alu 116946 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 159.667-38 chr15 66499211 66499388 + 1 NA 3' UTR (NM_000968, exon 10 of 10) 3' UTR (NM_000968, exon 10 of 10) -1484 NM_001329613 10302 Hs.30174 NM_006049 ENSG00000174446 SNAPC5 SNAP19 small nuclear RNA activating complex polypeptide 5 protein-coding 183.5-29 chr2 20839688 20839994 + 1 NA Intergenic L1MA3|LINE|L1 -16711 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 249.833-2 chr1 108065111 108065518 + 1 NA Intergenic Intergenic -100134 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 169.667-79 chr9 132385344 132385761 + 1 NA intron (NR_134525, intron 9 of 10) intron (NR_134525, intron 9 of 10) 21288 NR_134525 7270 Hs.54780 NM_007344 ENSG00000125482 TTF1 TTF-1|TTF-I transcription termination factor 1 protein-coding 263.667-9 chr2 24262925 24263433 + 1 NA intron (NM_001348182, intron 19 of 38) intron (NM_001348182, intron 19 of 38) 88126 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 448.667 chr15 72582661 72583381 + 1 NA intron (NM_005744, intron 13 of 13) intron (NM_005744, intron 13 of 13) -4196 NR_030359 693215 NR_030359 ENSG00000283798 MIR630 MIRN630|hsa-mir-630 microRNA 630 ncRNA 218.5-14 chr17 60710332 60710592 + 1 NA intron (NM_001330413, intron 5 of 25) AluY|SINE|Alu 32611 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 211.667-17 chr2 15016930 15017312 + 1 NA Intergenic L1MA5A|LINE|L1 384404 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 533.667 chr2 139811873 139813184 + 1 NA Intergenic Intergenic 774157 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 151.5-26 chr16 62042373 62042612 + 1 NA Intergenic Intergenic -6054 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 130.833-38 chr20 58632417 58632703 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -2212 NR_125359 79160 Hs.280135 NR_125359 ENSG00000268941 LINC01711 - long intergenic non-protein coding RNA 1711 ncRNA 131.333-76 chr4 59831619 59831986 + 1 NA Intergenic Intergenic 818229 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 183.667-22 chr14 52991408 52991924 + 1 NA Intergenic L1MA3|LINE|L1 -40569 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 203.333-49 chr8 66027973 66028346 + 1 NA intron (NM_033105, intron 1 of 5) intron (NM_033105, intron 1 of 5) 6606 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 318.667-3 chr3 89446380 89447072 + 1 NA intron (NM_005233, intron 13 of 16) intron (NM_005233, intron 13 of 16) 339105 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 122.5-24 chr12 102915224 102915404 + 1 NA intron (NM_000277, intron 1 of 12) intron (NM_000277, intron 1 of 12) 1930 NM_000277 5053 Hs.560019 NM_000277 ENSG00000171759 PAH PH|PKU|PKU1 phenylalanine hydroxylase protein-coding 116.167-75 chr7 106118559 106118697 + 1 NA Intergenic MER83A-int|LTR|ERV1 -6052 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 140.333-31 chr2 42344011 42344193 + 1 NA intron (NM_001319038, intron 2 of 2) Charlie2b|DNA|hAT-Charlie 15936 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 166.833-5 chr10 51784566 51784956 + 1 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) -85166 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 253.833 chr1 211600315 211600779 + 1 NA Intergenic AluJb|SINE|Alu -21386 NM_021194 7779 Hs.519469 NM_021194 ENSG00000170385 SLC30A1 ZNT1|ZRC1 solute carrier family 30 member 1 protein-coding 182.333-61 chr7 7262564 7262906 + 1 NA intron (NR_108073, intron 2 of 3) intron (NR_108073, intron 2 of 3) 7581 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 139.667-10 chr1 224625760 224625929 + 1 NA intron (NM_152495, intron 1 of 5) intron (NM_152495, intron 1 of 5) 9527 NR_136287 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 141.5-51 chr2 199956664 199956936 + 1 NA intron (NM_001369399, intron 2 of 4) intron (NM_001369399, intron 2 of 4) -1309 NR_109905 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 221.333-19 chr5 11656904 11657323 + 1 NA intron (NM_001288717, intron 2 of 20) Kanga1a|DNA|TcMar-Tc2 -68047 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 176.333-41 chr3 28452291 28452619 + 1 NA intron (NM_001324170, intron 3 of 6) AluSg4|SINE|Alu 103306 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 233.667-28 chr8 132155874 132156249 + 1 NA intron (NM_001204824, intron 9 of 14) intron (NM_001204824, intron 9 of 14) -50796 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 187.333-30 chr2 28416795 28417063 + 1 NA 3' UTR (NM_005253, exon 4 of 4) 3' UTR (NM_005253, exon 4 of 4) -22257 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 179.5-27 chr5 128103698 128104007 + 1 NA intron (NM_001046, intron 1 of 26) intron (NM_001046, intron 1 of 26) 20086 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 142.333-91 chr7 1634518 1634765 + 1 NA Intergenic Intergenic 20171 NR_001288 260341 Hs.534596 NR_001288 TFAMP1 MTTF1|TCF6L1 transcription factor A, mitochondrial pseudogene 1 pseudo 156.833-53 chr7 47041231 47041461 + 1 NA Intergenic Intergenic -344224 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 153.667-10 chr10 107396878 107397106 + 1 NA Intergenic Intergenic -232286 NM_001206569 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 233.333-10 chr14 84259767 84260145 + 1 NA Intergenic L1MC5a|LINE|L1 -1011976 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 178.833-33 chr6 143063913 143064317 + 1 NA intron (NM_001366355, intron 1 of 4) MLT1D|LTR|ERVL-MaLR 3226 NM_001366350 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 134.333-91 chr5 91983669 91983881 + 1 NA Intergenic Intergenic -600458 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 141.667-26 chr14 50620870 50621198 + 1 NA intron (NM_015915, intron 9 of 13) intron (NM_015915, intron 9 of 13) 47272 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 129.833-79 chrX 116599300 116599583 + 1 NA Intergenic Intergenic -136465 NM_001017978 203413 Hs.97892 NM_001017978 ENSG00000204019 CT83 CXorf61|KK-LC-1|KKLC1 cancer/testis antigen 83 protein-coding 135.167-93 chrX 152518440 152518903 + 1 NA Intergenic L1ME3B|LINE|L1 -67356 NM_000808 2556 Hs.123024 NM_000808 ENSG00000011677 GABRA3 - gamma-aminobutyric acid type A receptor alpha3 subunit protein-coding 267.667-11 chr2 59272616 59273102 + 1 NA intron (NR_110219, intron 2 of 2) MIRc|SINE|MIR 55151 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 137.667-23 chr12 59639404 59639600 + 1 NA intron (NM_001270623, intron 1 of 5) AluJo|SINE|Alu 43473 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 244.333-23 chr5 100303794 100304127 + 1 NA Intergenic Intergenic 84294 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 205.333-7 chr10 77078405 77078805 + 1 NA intron (NM_001271519, intron 13 of 28) intron (NM_001271519, intron 13 of 28) -62226 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 282.5-7 chr20 15856440 15857059 + 1 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 66565 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 171.667-64 chr5 43509233 43509501 + 1 NA 5' UTR (NM_198566, exon 2 of 13) 5' UTR (NM_198566, exon 2 of 13) 5781 NM_198566 375444 Hs.661641 NM_198566 ENSG00000172244 C5orf34 - chromosome 5 open reading frame 34 protein-coding 327.667 chr1 177492561 177492988 + 1 NA Intergenic Intergenic 141188 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 125.833-50 chr20 48645014 48645210 + 1 NA intron (NM_020820, intron 26 of 39) intron (NM_020820, intron 26 of 39) 182887 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 316.833-2 chr10 9073567 9073915 + 1 NA Intergenic Intergenic 175752 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 278.667-12 chr20 42626064 42626456 + 1 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -59223 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 211.5-7 chr12 67022978 67023342 + 1 NA Intergenic L1ME1|LINE|L1 73124 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 136.5-12 chr10 55838071 55838579 + 1 NA Intergenic Intergenic -210383 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 129.667-90 chr6 155159334 155159532 + 1 NA intron (NM_012454, intron 6 of 25) intron (NM_012454, intron 6 of 25) -57533 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 214.667-34 chr7 71610073 71610551 + 1 NA intron (NM_022479, intron 6 of 10) AluJr|SINE|Alu -302542 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 126.667-46 chr20 15119935 15120138 + 1 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -76804 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 189.333-28 chr2 140788993 140789360 + 1 NA intron (NM_018557, intron 32 of 90) intron (NM_018557, intron 32 of 90) -202491 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 312.667-12 chr8 81321768 81322136 + 1 NA Intergenic Intergenic 41416 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 221.667-2 chr1 104241096 104241346 + 1 NA Intergenic L2|LINE|L2 168198 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 175.667-38 chr20 59702775 59703156 + 1 NA intron (NM_001199506, intron 1 of 12) intron (NM_001199506, intron 1 of 12) -18245 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 138.667-38 chr16 65517643 65518028 + 1 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 58465 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 117.667-72 chr20 46552772 46552980 + 1 NA Intergenic Intergenic -2222 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 257.667-12 chr3 146391809 146392237 + 1 NA Intergenic L1ME4a|LINE|L1 77278 NM_001199978 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 245.5-23 chr6 156545774 156546158 + 1 NA Intergenic Intergenic 167216 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 140.333-70 chr5 111050126 111050271 + 1 NA Intergenic MIR|SINE|MIR -19882 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 209.5-31 chr5 24122411 24122708 + 1 NA intron (NR_131245, intron 4 of 4) THE1D-int|LTR|ERVL-MaLR 171211 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 283.5-19 chrX 50955545 50955990 + 1 NA Intergenic L1M4|LINE|L1 45032 NM_005448 9210 Hs.532692 NM_005448 ENSG00000130385 BMP15 GDF9B|ODG2|POF4 bone morphogenetic protein 15 protein-coding 121.667-18 chr11 109704170 109704291 + 1 NA Intergenic Intergenic 282040 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 159.5-36 chr4 55433442 55433718 + 1 NA 3' UTR (NM_001267843, exon 24 of 24) 3' UTR (NM_001267843, exon 24 of 24) 37623 NM_018475 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 176.667-39 chr2 168759614 168759853 + 1 NA intron (NM_001256126, intron 8 of 10) intron (NM_001256126, intron 8 of 10) 26696 NR_045786 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 - CERS6 antisense RNA 1 ncRNA 141.5-49 chr2 157312446 157312856 + 1 NA 3' UTR (NM_014568, exon 10 of 10) 3' UTR (NM_014568, exon 10 of 10) 13173 NM_001304346 57471 Hs.443894 NM_020711 ENSG00000136541 ERMN JN|KIAA1189 ermin protein-coding 286.167-10 chr5 22475344 22475749 + 1 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -261696 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 256.333-6 chr10 65752149 65752444 + 1 NA intron (NR_120647, intron 5 of 5) intron (NR_120647, intron 5 of 5) 180871 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 190.667-16 chr16 79880576 79880787 + 1 NA Intergenic Intergenic 85432 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 167.5-10 chr10 31878296 31878591 + 1 NA intron (NM_001270696, intron 3 of 17) Tigger8|DNA|TcMar-Tigger 30483 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 163.667-33 chr19 43962709 43963009 + 1 NA intron (NM_013359, intron 3 of 5) intron (NM_013359, intron 3 of 5) 11614 NM_013359 7638 Hs.631598 NM_013359 ENSG00000159905 ZNF221 - zinc finger protein 221 protein-coding 203.5-35 chr6 47149476 47149821 + 1 NA Intergenic Intergenic -107316 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 126.333-81 chr4 55555512 55555682 + 1 NA TTS (NM_152401) TTS (NM_152401) -8688 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 261.5-6 chr12 104461340 104461664 + 1 NA intron (NM_018413, intron 1 of 2) intron (NM_018413, intron 1 of 2) 4554 NM_018413 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537|OCBMD carbohydrate sulfotransferase 11 protein-coding 129.333-75 chr6 37953168 37953372 + 1 NA intron (NM_021943, intron 2 of 5) L1MEc|LINE|L1 133543 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 164.333-10 chr10 72953312 72953505 + 1 NA intron (NM_001318124, intron 1 of 3) intron (NM_001318124, intron 1 of 3) 1398 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 138.833-2 chr1 90368261 90368688 + 1 NA Intergenic Intergenic -289276 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 146.667-72 chr5 179348553 179348769 + 1 NA Intergenic Intergenic -3200 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 330.667-11 chr5 152866839 152867392 + 1 NA intron (NR_109877, intron 2 of 4) BLACKJACK|DNA|hAT-Blackjack 105234 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 204.333-15 chr13 57860687 57861080 + 1 NA Intergenic Intergenic 229139 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 181.167-10 chr19 28599275 28599617 + 1 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) -7242 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 195.5-42 chr8 133951268 133951641 + 1 NA Intergenic L1MB3|LINE|L1 64958 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 158.5-49 chr3 11695644 11695869 + 1 NA intron (NM_001284390, intron 2 of 6) intron (NM_001284390, intron 2 of 6) 24783 NM_014667 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 139.667-41 chr18 1297465 1297621 + 1 NA intron (NR_023926, intron 2 of 5) intron (NR_023926, intron 2 of 5) 62086 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 163.333-24 chr14 55171756 55172079 + 1 NA intron (NM_001146015, intron 10 of 19) L1MB3|LINE|L1 19668 NM_014750 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 138.667-17 chr11 103117059 103117210 + 1 NA intron (NM_001377, intron 5 of 88) L1ME4b|LINE|L1 7708 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 202.167-17 chr2 59066045 59066370 + 1 NA Intergenic Intergenic -151501 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 263.667-5 chr13 28398322 28398685 + 1 NA TTS (NM_001160031) TTS (NM_001160031) 96625 NM_001160030 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 174.333-56 chr6 165838071 165838317 + 1 NA Intergenic Intergenic -149357 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 221.5-18 chr2 56982373 56982594 + 1 NA Intergenic HERVK22-int|LTR|ERVK -796713 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 177.667-74 chr9 104109704 104109980 + 1 NA intron (NM_001042550, intron 9 of 24) Tigger2b_Pri|DNA|TcMar-Tigger 15215 NM_001042550 10592 Hs.119023 NM_006444 ENSG00000136824 SMC2 CAP-E|CAPE|SMC-2|SMC2L1 structural maintenance of chromosomes 2 protein-coding 161.667-86 chr8 67925675 67925924 + 1 NA Intergenic L1MCa|LINE|L1 -26247 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 126.667-94 chr7 137569928 137570133 + 1 NA intron (NM_001321710, intron 19 of 32) intron (NM_001321710, intron 19 of 32) -226297 NM_002825 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 186.333-31 chr2 31159682 31159929 + 1 NA Intergenic L2b|LINE|L2 -21365 NM_001329095 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 237.667-5 chr18 63758814 63759216 + 1 NA intron (NM_001040147, intron 1 of 7) intron (NM_001040147, intron 1 of 7) 5968 NM_001040147 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 131.667-42 chr15 69018746 69019014 + 1 NA intron (NM_024505, intron 1 of 15) (ATTTT)n|Simple_repeat|Simple_repeat 4185 NM_024505 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 239.667-17 chr2 81674519 81674989 + 1 NA Intergenic Intergenic -207808 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 115.667-110 chr6 170550538 170550672 + 1 NA intron (NM_002793, intron 1 of 5) intron (NM_002793, intron 1 of 5) 2702 NM_002793 5689 Hs.352768 NM_002793 ENSG00000008018 PSMB1 HC5|PMSB1|PSC5 proteasome subunit beta 1 protein-coding 262.333-11 chr15 61635861 61636335 + 1 NA Intergenic L1PB3|LINE|L1 -93820 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 225.167-19 chr22 33744122 33744509 + 1 NA non-coding (NR_038949, exon 7 of 10) non-coding (NR_038949, exon 7 of 10) 19329 NR_038950 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 300.667-5 chr2 231574245 231574741 + 1 NA Intergenic Intergenic -18371 NM_152614 165100 Hs.98104 NM_152614 ENSG00000177673 TEX44 C2orf57 testis expressed 44 protein-coding 146.833-70 chrX 44870085 44870487 + 1 NA Intergenic MIRb|SINE|MIR -2889 NM_021140 7403 Hs.522616 NM_021140 ENSG00000147050 KDM6A KABUK2|UTX|bA386N14.2 lysine demethylase 6A protein-coding 136.167-6 chr1 119909556 119909914 + 1 NA Intergenic Intergenic -13220 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 148.5-39 chr2 73660653 73660889 + 1 NA intron (NR_003683, intron 1 of 6) L1PA16|LINE|L1 15852 NR_003683 200420 Hs.739204 NM_145300 ENSG00000163016 ALMS1P1 ALMS1L|ALMS1P ALMS1 pseudogene 1 pseudo 170.167-54 chr8 100496483 100496671 + 1 NA Intergenic Intergenic 63182 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 174.5-21 chr2 115649130 115649491 + 1 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 305495 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 119.667-19 chr13 28375087 28375258 + 1 NA intron (NM_001160030, intron 14 of 14) intron (NM_001160030, intron 14 of 14) 119956 NM_001160030 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 252.333-9 chr12 72303811 72304281 + 1 NA intron (NM_013381, intron 2 of 18) MIRb|SINE|MIR -30537 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 244.5-8 chr15 72947774 72948219 + 1 NA Intergenic L1M2|LINE|L1 -104467 NM_002499 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 143.5-62 chr5 30743749 30743960 + 1 NA Intergenic Intergenic -449832 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 130.167-13 chr11 80008070 80008218 + 1 NA Intergenic Intergenic -567114 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 156.333-17 chr11 88624632 88624973 + 1 NA intron (NM_001143831, intron 3 of 8) intron (NM_001143831, intron 3 of 8) 120226 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 165.667-19 chr12 20432042 20432272 + 1 NA intron (NM_000921, intron 1 of 15) MIRb|SINE|MIR 62912 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 146.833-59 chr7 85267686 85268019 + 1 NA Intergenic L1MA4A|LINE|L1 -145921 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 176.333-28 chr15 65455245 65455444 + 1 NA intron (NM_197960, intron 17 of 20) AluJb|SINE|Alu -32397 NM_020962 57722 Hs.458607 NM_020962 ENSG00000103742 IGDCC4 DDM36|NOPE immunoglobulin superfamily DCC subclass member 4 protein-coding 256.333-14 chr20 14491518 14491801 + 1 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -62725 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 219.667-24 chr5 91790207 91790584 + 1 NA Intergenic UCON22|Unknown|Unknown -407078 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 167.333-20 chr11 111557114 111557393 + 1 NA intron (NM_178834, intron 5 of 6) intron (NM_178834, intron 5 of 6) 16745 NM_178834 143903 Hs.503831 NM_178834 ENSG00000204381 LAYN - layilin protein-coding 184.333-40 chr3 188564770 188565182 + 1 NA intron (NR_046623, intron 1 of 1) intron (NR_046623, intron 1 of 1) 3690 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 229.167-33 chr7 67352866 67353345 + 1 NA Intergenic Intergenic 17129 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 328.667-11 chr4 79465833 79466397 + 1 NA Intergenic Intergenic -26478 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 125.667-100 chr5 146796754 146796963 + 1 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 81927 NR_073526 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 150.667-9 chr1 172351113 172351281 + 1 NA intron (NM_015569, intron 17 of 20) intron (NM_015569, intron 17 of 20) -69488 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 214.833-13 chr17 43105821 43106439 + 1 NA intron (NR_027676, intron 4 of 22) AluJb|SINE|Alu 17985 NM_007298 672 Hs.194143 NM_007294 ENSG00000012048 BRCA1 BRCAI|BRCC1|BROVCA1|FANCS|IRIS|PNCA4|PPP1R53|PSCP|RNF53 BRCA1 DNA repair associated protein-coding 167.5-12 chr10 86925420 86925964 + 1 NA TTS (NM_004329) TTS (NM_004329) -30067 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 190.833-18 chr15 77964286 77964503 + 1 NA Intergenic L1M1|LINE|L1 -19833 NR_157580 440292 NR_157580 LOC440292 - COMM domain containing 4 pseudogene pseudo 476.667 chr3 185426239 185426838 + 1 NA intron (NM_004721, intron 1 of 13) L2c|LINE|L2 63402 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 149.333-44 chr19 45577331 45577545 + 1 NA intron (NM_025136, intron 1 of 1) intron (NM_025136, intron 1 of 1) 7364 NM_025136 80207 Hs.466945 NM_025136 ENSG00000125741 OPA3 MGA3 outer mitochondrial membrane lipid metabolism regulator OPA3 protein-coding 189.5-34 chr21 23028505 23028764 + 1 NA Intergenic (TTTTTAA)n|Simple_repeat|Simple_repeat -50650 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 170.667-8 chr11 16617516 16617817 + 1 NA intron (NM_001367872, intron 2 of 16) intron (NM_001367872, intron 2 of 16) 120811 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 242.833-2 chr1 241969748 241970159 + 1 NA Intergenic Intergenic 12186 NM_001290693 441925 Hs.731347 NM_001290693 ENSG00000196289 BECN2 BECN1L1|BECN1P1 beclin 2 protein-coding 116.667-9 chr1 219248949 219249097 + 1 NA Intergenic Intergenic 74054 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 131.5-24 chr14 28623614 28623838 + 1 NA Intergenic Intergenic 141593 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 136.5-37 chr15 88979448 88979702 + 1 NA Intergenic AluSp|SINE|Alu -66196 NM_005928 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 175.5-26 chr2 228740938 228741198 + 1 NA Intergenic L1MA4|LINE|L1 -129673 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 123.333-51 chr2 64452604 64452740 + 1 NA Intergenic MIR|SINE|MIR -1490 NM_014181 29094 Hs.372208 NM_014181 ENSG00000119862 LGALSL GRP|HSPC159 galectin like protein-coding 226.167-3 chr11 12297572 12298149 + 1 NA intron (NM_032867, intron 3 of 8) L1ME4b|LINE|L1 10960 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 204.5-39 chr7 107189687 107189967 + 1 NA intron (NM_001244262, intron 7 of 10) intron (NM_001244262, intron 7 of 10) 20824 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 352.333-4 chr2 180482827 180483292 + 1 NA Intergenic Intergenic -209045 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 327.333-4 chr14 60252754 60253147 + 1 NA intron (NM_177951, intron 2 of 3) intron (NM_177951, intron 2 of 3) 3729 NM_177951 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 227.333-44 chr8 59958606 59959009 + 1 NA Intergenic Intergenic 322593 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 196.667-24 chr19 30304955 30305213 + 1 NA Intergenic Intergenic -67300 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 133.667-72 chr5 79986927 79987087 + 1 NA exon (NM_001167741, exon 6 of 8) exon (NM_001167741, exon 6 of 8) 4255 NM_001167741 345778 Hs.531418 NM_001010891 ENSG00000177034 MTX3 - metaxin 3 protein-coding 171.833-40 chr5 131650117 131650457 + 1 NA intron (NM_133372, intron 16 of 17) L1MB4|LINE|L1 -15058 NM_001164387 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 224.667-3 chr1 165122918 165123308 + 1 NA Intergenic Intergenic 233128 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 227.5-15 chr18 850893 851238 + 1 NA Intergenic L1MC5a|LINE|L1 -38823 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 249.5-11 chr2 83183119 83183747 + 1 NA Intergenic Intergenic 326630 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 269.333-10 chr17 51466981 51467279 + 1 NA Intergenic AluJb|SINE|Alu 31703 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 284.667-16 chr9 102702611 102703123 + 1 NA Intergenic MIR|SINE|MIR 183230 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 235.667-25 chr8 88599934 88600333 + 1 NA Intergenic Intergenic -272650 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 264.167-16 chr3 102379112 102379602 + 1 NA Intergenic MARNA|DNA|TcMar-Mariner -55658 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 152.5-45 chr4 36166192 36166423 + 1 NA intron (NR_146894, intron 10 of 32) intron (NR_146894, intron 10 of 32) 77632 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 146.333-60 chr3 23397790 23398032 + 1 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 194584 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 187.333-41 chr20 51871053 51871263 + 1 NA Intergenic MER3|DNA|hAT-Charlie -8245 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 197.5-22 chr19 16612927 16613248 + 1 NA intron (NM_004831, intron 1 of 2) MIR3|SINE|MIR 15117 NM_004831 9441 Hs.715040 NM_004831 ENSG00000105085 MED26 CRSP7|CRSP70 mediator complex subunit 26 protein-coding 210.5-37 chr4 154615470 154615829 + 1 NA Intergenic Intergenic -2841 NM_000509 2266 Hs.727584 NM_000509 ENSG00000171557 FGG - fibrinogen gamma chain protein-coding 151.333-34 chr17 55832666 55832990 + 1 NA Intergenic Intergenic 81723 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 232.667-29 chr7 49637448 49637747 + 1 NA Intergenic HAL1ME|LINE|L1 -136041 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 123.667-24 chr12 8962710 8962896 + 1 NA intron (NR_137427, intron 1 of 2) L1MEc|LINE|L1 12759 NM_001329102 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 148.667-82 chr8 135181668 135181876 + 1 NA Intergenic Intergenic -52359 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 137.5-41 chr19 29589049 29589264 + 1 NA Intergenic AluJr|SINE|Alu -17127 NM_006627 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 156.5-76 chr6 122202434 122202708 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -196980 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 214.333-24 chr2 145226175 145226509 + 1 NA Intergenic Intergenic 558375 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 324.167-5 chr7 7402108 7402688 + 1 NA intron (NM_001037763, intron 27 of 34) intron (NM_001037763, intron 27 of 34) 133475 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 114.5-80 chr6 128840954 128841108 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -42107 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 158.5-87 chr8 129172123 129172417 + 1 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 68970 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 175.667-66 chr7 149667756 149668110 + 1 NA Intergenic AluSx|SINE|Alu -43143 NR_027789 79970 Hs.520785 NM_024910 ENSG00000133624 ZNF767P ZNF767 zinc finger family member 767, pseudogene pseudo 163.5-36 chr20 494499 494814 + 1 NA intron (NM_001362771, intron 7 of 13) L2a|LINE|L2 -32123 NM_144628 128637 Hs.590876 NM_144628 ENSG00000125875 TBC1D20 C20orf140|WARBM4 TBC1 domain family member 20 protein-coding 166.167-59 chr7 46838581 46838974 + 1 NA Intergenic LTR16C|LTR|ERVL -141655 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 237.833-10 chr4 103472720 103473122 + 1 NA Intergenic Tigger7|DNA|TcMar-Tigger 47879 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 141.833-6 chr10 88401436 88401713 + 1 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 181744 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 222.333-17 chr2 115797998 115798416 + 1 NA intron (NM_001321912, intron 20 of 25) intron (NM_001321912, intron 20 of 25) 454392 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 154.667-56 chr5 180866830 180867062 + 1 NA Intergenic L1ME4b|LINE|L1 -5660 NM_152283 643836 Hs.509227 NM_152283 ENSG00000196670 ZFP62 ZET|ZNF755 ZFP62 zinc finger protein protein-coding 164.333-77 chr7 16952796 16953080 + 1 NA Intergenic Intergenic -70955 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 139.833-37 chr19 28226600 28226948 + 1 NA Intergenic Intergenic -379914 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 167.833-43 chr4 106837669 106838202 + 1 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 198378 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 275.667-28 chr8 132777901 132778428 + 1 NA intron (NM_198513, intron 2 of 7) intron (NM_198513, intron 2 of 7) 2776 NM_001277196 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 190.833-4 chr1 246348888 246349287 + 1 NA intron (NM_022743, intron 2 of 11) L1MCa|LINE|L1 68325 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 117.5-13 chr12 114588262 114588463 + 1 NA Intergenic Intergenic 95813 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 120.667-10 chr10 7970120 7970386 + 1 NA intron (NM_031923, intron 3 of 6) intron (NM_031923, intron 3 of 6) 82238 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 176.333-5 chr1 199426263 199426499 + 1 NA Intergenic L1PB4|LINE|L1 277783 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 243.833-4 chr1 193822000 193822393 + 1 NA Intergenic L1MEd|LINE|L1 517451 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 260.833-14 chr6 69767763 69768260 + 1 NA intron (NM_001367272, intron 3 of 15) L1MB7|LINE|L1 28455 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 190.667-28 chr20 38077686 38078010 + 1 NA intron (NM_021215, intron 6 of 6) L2c|LINE|L2 44102 NM_021215 58490 Hs.278839 NM_021215 ENSG00000101413 RPRD1B C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 152.333-20 chr15 22819760 22820075 + 1 NA intron (NM_144599, intron 3 of 4) AluJo|SINE|Alu -18724 NM_001184888 81614 Hs.591003 NM_030922 ENSG00000140157 NIPA2 SLC57A2 NIPA magnesium transporter 2 protein-coding 287.5-13 chr3 126282202 126282535 + 1 NA Intergenic L1MB8|LINE|L1 75040 NM_014079 28999 Hs.272215 NM_014079 ENSG00000163884 KLF15 KKLF Kruppel like factor 15 protein-coding 187.5-7 chr11 90627081 90627347 + 1 NA intron (NR_104190, intron 3 of 6) MER58A|DNA|hAT-Charlie -71357 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 250.5-22 chr7 68049894 68050311 + 1 NA Intergenic AluJr|SINE|Alu 29849 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 155.667-43 chr2 100492222 100492528 + 1 NA Intergenic Intergenic 21893 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 172.5-43 chr4 67494208 67494534 + 1 NA intron (NR_155754, intron 13 of 18) intron (NR_155754, intron 13 of 18) 51132 NM_001362481 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 177.333-36 chr2 100052743 100053110 + 1 NA intron (NM_001025108, intron 2 of 23) intron (NM_001025108, intron 2 of 23) 52657 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 150.333-28 chr12 25932403 25932679 + 1 NA Intergenic Intergenic 25044 NR_038227 100506451 Hs.560092 NR_038227 RASSF8-AS1 - RASSF8 antisense RNA 1 ncRNA 155.5-48 chr5 103746560 103746851 + 1 NA Intergenic Intergenic -183916 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 213.667-5 chr12 13501703 13502004 + 1 NA Intergenic MLT1F2|LTR|ERVL-MaLR -125108 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 113.333-111 chr8 137736824 137736983 + 1 NA Intergenic Intergenic -323315 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 153.167-57 chr8 47542232 47542555 + 1 NA intron (NM_001352958, intron 10 of 21) intron (NM_001352958, intron 10 of 21) -111695 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 211.5-20 chr4 52077667 52078135 + 1 NA intron (NM_001346103, intron 3 of 8) intron (NM_001346103, intron 3 of 8) 26597 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 200.5-39 chr6 158626340 158626649 + 1 NA intron (NM_020823, intron 13 of 16) intron (NM_020823, intron 13 of 16) 16787 NR_106981 102465694 NR_106981 ENSG00000278571 MIR7161 hsa-mir-7161 microRNA 7161 ncRNA 121.167-13 chr1 233247173 233247345 + 1 NA intron (NM_014801, intron 8 of 33) intron (NM_014801, intron 8 of 33) 48466 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 220.5-17 chr2 106010265 106010877 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -55117 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 246.667-19 chr4 147055337 147055685 + 1 NA Intergenic LTR67B|LTR|ERVL -109625 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 174.667-36 chr2 189897216 189897550 + 1 NA Intergenic Intergenic 112933 NM_001321046 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 132.333-67 chr21 21373400 21373660 + 1 NA intron (NM_001352592, intron 9 of 18) intron (NM_001352592, intron 9 of 18) 226368 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 156.5-58 chr3 43608032 43608272 + 1 NA intron (NM_001346469, intron 1 of 11) L1MEg|LINE|L1 13774 NM_001346466 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 236.5-35 chr9 106848970 106849408 + 1 NA Intergenic Intergenic -13977 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 157.333-9 chr11 48639378 48639741 + 1 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat 150766 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 302.333-12 chr8 118192436 118193043 + 1 NA non-coding (NR_109794, exon 5 of 5) non-coding (NR_109794, exon 5 of 5) -80920 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 343.833-6 chr3 115588148 115588823 + 1 NA Intergenic Intergenic -35025 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 280.667-9 chr15 77381357 77381868 + 1 NA intron (NM_024776, intron 1 of 7) MamTip2|DNA|hAT-Tip100 38492 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 178.833-13 chr15 33305476 33305923 + 1 NA intron (NR_120327, intron 2 of 2) intron (NR_120327, intron 2 of 2) 4546 NR_120326 101928134 Hs.133851 NR_120326 ENSG00000259446 LOC101928134 - uncharacterized LOC101928134 ncRNA 199.667-55 chr6 151581441 151581849 + 1 NA intron (NM_025059, intron 6 of 10) Tigger1|DNA|TcMar-Tigger 87628 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 159.667-8 chr1 184341867 184342167 + 1 NA Intergenic Intergenic -45012 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 197.167-32 chr20 62653270 62653822 + 1 NA intron (NM_016354, intron 1 of 11) intron (NM_016354, intron 1 of 11) 11043 NM_016354 28231 Hs.235782 NM_016354 ENSG00000101187 SLCO4A1 OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12 solute carrier organic anion transporter family member 4A1 protein-coding 149.333-90 chr8 14120426 14120613 + 1 NA intron (NM_001322880, intron 4 of 6) L1ME4a|LINE|L1 490829 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 248.667-13 chr2 37203679 37204144 + 1 NA 3' UTR (NM_001322373, exon 6 of 6) 3' UTR (NM_001322373, exon 6 of 6) 7415 NM_001322375 100505876 Hs.666958 NM_001322373 ENSG00000218739 CEBPZOS CEBPZ-AS1 CEBPZ opposite strand protein-coding 221.5-11 chr13 93825561 93826025 + 1 NA intron (NR_046536, intron 5 of 6) intron (NR_046536, intron 5 of 6) 32680 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 159.5-8 chr10 99014665 99014888 + 1 NA intron (NM_021828, intron 3 of 11) L1PA4|LINE|L1 -90208 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 127.5-24 chr14 73047137 73047293 + 1 NA Intergenic L1MB7|LINE|L1 -11319 NM_021239 58517 Hs.531106 NM_021239 ENSG00000119707 RBM25 NET52|RED120|RNPC7|S164|Snu71|fSAP94 RNA binding motif protein 25 protein-coding 166.167-28 chr2 228122382 228122738 + 1 NA intron (NM_030623, intron 2 of 10) intron (NM_030623, intron 2 of 10) 59085 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 141.833-43 chr7 84094410 84094900 + 1 NA intron (NM_006080, intron 4 of 16) intron (NM_006080, intron 4 of 16) 100134 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 256.167-6 chr12 22809836 22810109 + 1 NA Intergenic Intergenic 184801 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 231.333-16 chr18 71722942 71723438 + 1 NA Intergenic Intergenic 59036 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 183.5-34 chr2 133927640 133927941 + 1 NA Intergenic Intergenic -192145 NM_001371457 290.333-11 chrX 83414995 83415303 + 1 NA Intergenic L1MA3|LINE|L1 -93141 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 143.333-10 chr11 48167079 48167335 + 1 NA exon (NM_002843, exon 25 of 25) exon (NM_002843, exon 25 of 25) -49603 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 310.333-7 chr3 103088425 103088909 + 1 NA Intergenic MLT1F-int|LTR|ERVL-MaLR 435449 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 210.5-11 chr12 17069044 17069456 + 1 NA Intergenic L1ME3A|LINE|L1 80503 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 141.667-70 chr3 173075570 173075838 + 1 NA intron (NM_031955, intron 2 of 10) L1MA4|LINE|L1 65531 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 209.5-19 chr19 27790485 27790786 + 1 NA non-coding (NR_027301, exon 3 of 3) non-coding (NR_027301, exon 3 of 3) -2796 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 243.5-27 chr7 38808543 38808859 + 1 NA intron (NM_014396, intron 7 of 28) intron (NM_014396, intron 7 of 28) 100490 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 210.167-6 chr10 33627585 33627873 + 1 NA Intergenic Intergenic 144951 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 210.667-37 chr3 123661552 123661824 + 1 NA intron (NM_001321309, intron 22 of 32) intron (NM_001321309, intron 22 of 32) -27956 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 145.667-92 chr6 147735033 147735320 + 1 NA Intergenic Intergenic 226486 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 142.167-74 chr7 54755700 54755938 + 1 NA exon (NM_001012456, exon 3 of 4) exon (NM_001012456, exon 3 of 4) 3392 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 187.5-55 chr8 129228548 129228861 + 1 NA intron (NR_033916, intron 1 of 2) intron (NR_033916, intron 1 of 2) 12536 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 157.5-52 chr5 84950486 84950795 + 1 NA Intergenic Intergenic -565760 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 180.167-30 chr20 47620955 47621215 + 1 NA intron (NM_181659, intron 2 of 22) intron (NM_181659, intron 2 of 22) 119198 NM_181659 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 184.833-15 chr20 16135332 16135816 + 1 NA Intergenic L1MB7|LINE|L1 -149692 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 135.667-114 chr9 28135192 28135384 + 1 NA intron (NM_152570, intron 5 of 6) L1M7|LINE|L1 -561422 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 137.5-60 chr3 95435581 95435880 + 1 NA Intergenic Intergenic 247463 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 190.833-45 chr8 139780285 139780604 + 1 NA intron (NM_001160372, intron 21 of 22) L1MC1|LINE|L1 -77321 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 226.167-11 chr18 8667696 8668087 + 1 NA Intergenic MER65-int|LTR|ERV1 39730 NR_120598 100287082 Hs.439434 NR_120598 ENSG00000265962 GACAT2 MTCL1-AS1|MTCL1AS1 gastric cancer associated transcript 2 ncRNA 147.667-6 chr1 178548876 178549079 + 1 NA TTS (NR_033186) TTS (NR_033186) 6181 NR_033186 400798 Hs.668085 NM_207467 ENSG00000213057 C1orf220 - chromosome 1 open reading frame 220 (putative) ncRNA 136.333-70 chr4 90886753 90886958 + 1 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 651824 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 114.667-10 chr10 115983756 115983994 + 1 NA Intergenic L1ME1|LINE|L1 210914 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 286.333-9 chr4 54035647 54036112 + 1 NA intron (NM_012110, intron 3 of 5) L1M5|LINE|L1 28726 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 166.167-38 chr4 71790304 71790550 + 1 NA intron (NM_001204306, intron 1 of 13) L1MEc|LINE|L1 -6348 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 248.167-19 chr5 63271190 63271495 + 1 NA Intergenic Intergenic 690950 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 124.667-25 chr12 45595731 45596021 + 1 NA Intergenic Intergenic 132045 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 151.333-47 chr2 110931674 110931894 + 1 NA intron (NM_001371254, intron 11 of 18) L1ME1|LINE|L1 183804 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 177.333-14 chr10 119798812 119799254 + 1 NA intron (NM_014937, intron 9 of 19) intron (NM_014937, intron 9 of 19) -20224 NM_001243194 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 229.833-6 chr14 58504605 58504974 + 1 NA intron (NM_001329944, intron 27 of 31) L2b|LINE|L2 65108 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 233.167-30 chr6 91960163 91960746 + 1 NA Intergenic Intergenic -270026 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 262.167 chr1 23173142 23173680 + 1 NA Intergenic AluSx1|SINE|Alu -4553 NM_001142546 7798 Hs.257900 NM_033631 ENSG00000169641 LUZP1 LUZP leucine zipper protein 1 protein-coding 214.667-45 chr9 106946065 106946502 + 1 NA intron (NM_001347997, intron 7 of 12) intron (NM_001347997, intron 7 of 12) 83117 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 206.5-31 chr6 135266816 135267027 + 1 NA Intergenic Intergenic 27761 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 177.667-7 chr10 43765897 43766161 + 1 NA Intergenic L1PA16|LINE|L1 12796 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 148.667-12 chr11 106081014 106081317 + 1 NA intron (NM_015423, intron 2 of 5) intron (NM_015423, intron 2 of 5) -3427 NM_152433 143879 Hs.101949 NM_152433 ENSG00000182359 KBTBD3 BKLHD3 kelch repeat and BTB domain containing 3 protein-coding 148.667-43 chr20 49942951 49943245 + 1 NA intron (NM_018683, intron 2 of 5) intron (NM_018683, intron 2 of 5) 6701 NM_018683 55905 Hs.144949 NM_018683 ENSG00000124226 RNF114 PSORS12|ZNF313 ring finger protein 114 protein-coding 171.333-22 chr13 85281090 85281397 + 1 NA Intergenic Intergenic -82360 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 291.667 chr1 64567768 64568107 + 1 NA intron (NM_020925, intron 2 of 26) intron (NM_020925, intron 2 of 26) -11910 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 152.5-25 chr2 101307096 101307364 + 1 NA intron (NM_173647, intron 1 of 6) AluJr|SINE|Alu 1471 NM_173647 284996 Hs.142074 NM_173647 ENSG00000163162 RNF149 DNAPTP2 ring finger protein 149 protein-coding 226.667-23 chr4 53213296 53213556 + 1 NA intron (NM_152540, intron 4 of 8) intron (NM_152540, intron 4 of 8) 152635 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 181.167-35 chr8 129432915 129433170 + 1 NA intron (NR_130920, intron 1 of 3) L1M1|LINE|L1 51100 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 158.333-63 chr6 112498788 112499065 + 1 NA Intergenic Charlie25|DNA|hAT-Charlie 151596 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 187.167-41 chr8 6852298 6852660 + 1 NA Intergenic MER115|DNA|hAT-Tip100 16925 NR_045217 100652791 Hs.369771 NR_045217 ENSG00000245857 GS1-24F4.2 - uncharacterized LOC100652791 ncRNA 131.667-2 chr1 73004670 73004892 + 1 NA Intergenic Intergenic -301389 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 168.667-16 chr14 39436936 39437232 + 1 NA Intergenic Intergenic -4584 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 198.5-11 chr15 37070690 37071003 + 1 NA intron (NM_172316, intron 7 of 12) intron (NM_172316, intron 7 of 12) 27850 NM_172315 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 395.833 chr1 62664632 62665327 + 1 NA intron (NM_001367561, intron 1 of 49) intron (NM_001367561, intron 1 of 49) 23389 NM_001272000 85440 Hs.744927 NM_033407 ENSG00000116641 DOCK7 EIEE23|ZIR2 dedicator of cytokinesis 7 protein-coding 149.333-79 chr5 170928685 170928896 + 1 NA intron (NM_022897, intron 12 of 27) L1ME1|LINE|L1 66772 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 187.333-57 chr4 18046642 18046994 + 1 NA Intergenic L1ME3F|LINE|L1 -24943 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 145.833-44 chr2 219939395 219939590 + 1 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -32927 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 185.5-48 chr8 25159366 25159563 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -25225 NM_001322810 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 236.333-13 chr2 50406412 50406753 + 1 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -58826 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 259.667-24 chr5 38947724 38948121 + 1 NA intron (NM_001285440, intron 31 of 37) intron (NM_001285440, intron 31 of 37) 101910 NM_003999 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 270.667-14 chr20 13501887 13502242 + 1 NA intron (NR_136631, intron 10 of 13) intron (NR_136631, intron 10 of 13) 136868 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 294.5-6 chr18 1109766 1110297 + 1 NA Intergenic Intergenic -182038 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 212.333-24 chr3 4994981 4995362 + 1 NA Intergenic Intergenic -15210 NR_125915 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 139.5-23 chr2 14163665 14163880 + 1 NA Intergenic L1PA16|LINE|L1 237186 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 190.833-26 chr20 9757332 9757741 + 1 NA intron (NM_177990, intron 1 of 9) intron (NM_177990, intron 1 of 9) 81540 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 113.333-35 chr13 83048898 83049029 + 1 NA Intergenic Intergenic 833430 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 256.5-30 chr5 155702812 155703161 + 1 NA Intergenic HERV16-int|LTR|ERVL -623771 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 248.667-14 chr2 51224788 51225179 + 1 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 192382 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 241.667-26 chr4 64621392 64621666 + 1 NA Intergenic AluSx1|SINE|Alu -212069 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 117.333-28 chr14 41421887 41422051 + 1 NA Intergenic L1M4|LINE|L1 -184887 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 177.667-75 chrX 99544361 99544597 + 1 NA Intergenic L1MA3|LINE|L1 865794 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 209.667-17 chr16 50576915 50577207 + 1 NA intron (NM_033119, intron 3 of 9) intron (NM_033119, intron 3 of 9) 28665 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 188.167-32 chr4 44407994 44408224 + 1 NA intron (NM_198353, intron 1 of 1) MIRc|SINE|MIR 40700 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 182.667-47 chr5 96073708 96074026 + 1 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) -5271 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 263.333 chr1 98820847 98821143 + 1 NA Intergenic Intergenic 159274 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 242.333-21 chr8 59895457 59895825 + 1 NA Intergenic Tigger2|DNA|TcMar-Tigger 385759 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 321.5-4 chr2 178503382 178503939 + 1 NA intron (NM_019091, intron 7 of 7) intron (NM_019091, intron 7 of 7) -19167 NR_038272 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 277.5 chr1 215927159 215927586 + 1 NA intron (NM_206933, intron 38 of 71) Tigger13a|DNA|TcMar-Tigger -145093 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 249.667-35 chr5 45368825 45369193 + 1 NA intron (NM_021072, intron 4 of 7) L1ME1|LINE|L1 327371 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 263.5-15 chr2 206162689 206163231 + 1 NA TTS (NM_001959) TTS (NM_001959) 732 NR_002590 619569 Hs.742407 NR_002590 ENSG00000207406 SNORA41 ACA41|SNORA41A small nucleolar RNA, H/ACA box 41 snoRNA 350.667-5 chr18 9311329 9311906 + 1 NA Intergenic L1ME1|LINE|L1 -23156 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 182.333-5 chr1 239191142 239191464 + 1 NA Intergenic Intergenic -195265 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 282.833-3 chr4 48928354 48928956 + 1 NA Intergenic AluSx|SINE|Alu -21827 NM_152398 132299 Hs.95835 NM_152398 ENSG00000145247 OCIAD2 - OCIA domain containing 2 protein-coding 113.5-17 chr11 22572398 22572593 + 1 NA Intergenic MLT1H|LTR|ERVL-MaLR 53346 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF FA complementation group F protein-coding 119.5-64 chr3 84544679 84544877 + 1 NA Intergenic L1PA16|LINE|L1 324797 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 155.667-50 chr3 121250915 121251119 + 1 NA intron (NM_001348343, intron 15 of 27) intron (NM_001348343, intron 15 of 27) 201377 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 228.333-36 chr7 37063299 37063743 + 1 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 65725 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 129.333-96 chr8 49939501 49939758 + 1 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) 28222 NM_001321776 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 132.667-73 chr4 67462358 67462615 + 1 NA Intergenic L1MD2|LINE|L1 -40486 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 285.167-9 chr7 95168989 95169390 + 1 NA intron (NM_017650, intron 5 of 15) L1MA4A|LINE|L1 155343 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 186.333-30 chr2 23758750 23758959 + 1 NA intron (NR_125717, intron 25 of 28) intron (NR_125717, intron 25 of 28) 168269 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 238.833-6 chr2 187502306 187502561 + 1 NA intron (NM_001318941, intron 3 of 7) intron (NM_001318941, intron 3 of 7) 52002 NM_006287 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 173.333-53 chr5 30255829 30256162 + 1 NA Intergenic THE1B-int|LTR|ERVL-MaLR 375435 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 123.5-79 chr7 98517674 98517834 + 1 NA Intergenic AluSx1|SINE|Alu -99531 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 362.333-4 chr7 84410814 84411408 + 1 NA Intergenic Intergenic -121365 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 238.667-30 chr6 137366688 137367044 + 1 NA Intergenic Intergenic 127528 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 250.833-9 chr4 45627516 45627988 + 1 NA Intergenic Intergenic 496302 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 136.5-36 chr15 59309938 59310246 + 1 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 62779 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 175.5-63 chr8 110836940 110837130 + 1 NA Intergenic L1M3d|LINE|L1 190398 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 189.333-29 chr2 195109323 195109583 + 1 NA Intergenic MIRb|SINE|MIR 378858 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 185.5-26 chr20 39589701 39590003 + 1 NA Intergenic Intergenic -365104 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 188.333-59 chr8 59310537 59311057 + 1 NA Intergenic Intergenic 191587 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 176.5-26 chr17 53888733 53889032 + 1 NA Intergenic MER44B|DNA|TcMar-Tigger 65955 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 211.833-8 chr14 54059264 54059580 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -102531 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 140.5-36 chr2 86247847 86248078 + 1 NA intron (NM_001164732, intron 3 of 4) intron (NM_001164732, intron 3 of 4) 48505 NM_016622 51318 Hs.433439 NM_016622 ENSG00000132313 MRPL35 L35mt|MRP-L35 mitochondrial ribosomal protein L35 protein-coding 154.667-35 chr2 30290912 30291115 + 1 NA Intergenic Intergenic -55633 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 142.333-51 chr2 67247259 67247679 + 1 NA intron (NR_110564, intron 1 of 4) intron (NR_110564, intron 1 of 4) -32150 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 195.667-41 chr7 67867541 67867929 + 1 NA Intergenic Intergenic -152518 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 167.167-34 chr19 29595691 29595960 + 1 NA Intergenic Intergenic -10458 NM_006627 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 301.333-6 chr17 63502854 63503322 + 1 NA Intergenic LTR24C|LTR|ERV1 18242 NM_152830 1636 Hs.298469 NM_000789 ENSG00000159640 ACE ACE1|CD143|DCP|DCP1 angiotensin I converting enzyme protein-coding 320.5-4 chr2 21227550 21228073 + 1 NA Intergenic L1ME4b|LINE|L1 103825 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 121.333-86 chr5 151986641 151986834 + 1 NA intron (NR_109876, intron 1 of 2) L1M2|LINE|L1 27839 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 260.333 chr12 22507906 22508208 + 1 NA intron (NM_001286176, intron 9 of 26) Tigger15a|DNA|TcMar-Tigger 36140 NM_001286174 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 157.667-12 chr11 33149287 33149552 + 1 NA intron (NM_001326, intron 1 of 20) intron (NM_001326, intron 1 of 20) 12061 NM_001326 1479 Hs.44402 NM_001326 ENSG00000176102 CSTF3 CSTF-77 cleavage stimulation factor subunit 3 protein-coding 134.667-46 chr2 13431219 13431379 + 1 NA Intergenic Intergenic -424286 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 210.5-39 chr5 36801854 36802213 + 1 NA Intergenic AluSg|SINE|Alu 74661 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 279.833-10 chr9 108943713 108944235 + 1 NA exon (NM_001286974, exon 16 of 19) exon (NM_001286974, exon 16 of 19) 9574 NM_017832 54942 Hs.29276 NM_017832 ENSG00000119328 ABITRAM C9orf6|CG-8|FAM206A|Simiate actin binding transcription modulator protein-coding 260.167-2 chr1 56732631 56733350 + 1 NA intron (NM_001004303, intron 15 of 19) L1MA5A|LINE|L1 86414 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 328.167-7 chr8 114406458 114407082 + 1 NA Intergenic THE1C|LTR|ERVL-MaLR -969831 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 163.5-77 chr8 128296112 128296386 + 1 NA Intergenic MIRb|SINE|MIR 146133 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 193.333-45 chr5 92563130 92563632 + 1 NA Intergenic Intergenic 1007962 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 302.667-4 chr10 68197350 68197686 + 1 NA intron (NR_045663, intron 14 of 17) (TATTTT)n|Simple_repeat|Simple_repeat 34595 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 227.333-46 chr8 126711310 126711673 + 1 NA Intergenic MER68|LTR|ERVL -153013 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 258.667-21 chr6 133815419 133815794 + 1 NA intron (NR_109982, intron 2 of 8) L2b|LINE|L2 -5541 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 217.333-17 chr2 66104465 66104684 + 1 NA Intergenic MIRc|SINE|MIR 253754 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 435.333-3 chr3 145428935 145429594 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 639921 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 305.5-11 chr8 111553666 111554077 + 1 NA Intergenic Intergenic 177232 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 130.667-49 chr3 31130737 31130964 + 1 NA Intergenic Intergenic 30937 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 214.667-30 chr6 37880670 37881144 + 1 NA intron (NM_021943, intron 1 of 5) L1HS|LINE|L1 61180 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 150.833-9 chr14 43530593 43530930 + 1 NA Intergenic MIRc|SINE|MIR 976522 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 141.5-8 chr10 58481143 58481360 + 1 NA Intergenic MER104|DNA|TcMar-Tc2 -31621 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 129.667-61 chr20 24841657 24841817 + 1 NA Intergenic Intergenic -107532 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 182.5-47 chr9 28129841 28130086 + 1 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -556097 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 272.5-16 chr4 146411020 146411478 + 1 NA intron (NM_001317816, intron 4 of 10) intron (NM_001317816, intron 4 of 10) 2666 NR_107003 102465837 NR_107003 ENSG00000278438 MIR7849 hsa-mir-7849 microRNA 7849 ncRNA 203.333-36 chr4 110697368 110697767 + 1 NA Intergenic L1MA7|LINE|L1 -55444 NM_153426 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|ASGD4|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 118.167-19 chr14 73224436 73224736 + 1 NA TTS (NM_007318) TTS (NM_007318) -12920 NM_173462 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 131.167-70 chr7 12930715 12930911 + 1 NA Intergenic Intergenic 243180 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 171.5-6 chr10 109345870 109346215 + 1 NA Intergenic LTR16C|LTR|ERVL 577204 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 176.5-15 chr12 39266197 39266560 + 1 NA Intergenic Intergenic 176742 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 218.667-31 chr5 152432236 152432636 + 1 NA Intergenic Intergenic -27157 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 177.333-13 chr10 91764265 91764464 + 1 NA Intergenic L1PB4|LINE|L1 33832 NR_108070 100507633 Hs.291528 NR_108070 ENSG00000228701 TNKS2-AS1 - TNKS2 antisense RNA 1 (head to head) ncRNA 143.833-11 chr17 19848762 19849214 + 1 NA intron (NM_014683, intron 5 of 26) intron (NM_014683, intron 5 of 26) 18948 NM_001142610 9706 Hs.168762 NM_014683 ENSG00000083290 ULK2 ATG1B|Unc51.2 unc-51 like autophagy activating kinase 2 protein-coding 151.5-12 chr10 55287424 55287661 + 1 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -311500 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 266.667-10 chr2 174368673 174369125 + 1 NA intron (NM_004882, intron 7 of 9) Tigger1|DNA|TcMar-Tigger 26813 NM_004882 9541 Hs.632531 NM_004882 ENSG00000138433 CIR1 CIR corepressor interacting with RBPJ, 1 protein-coding 165.167-64 chr9 31187289 31187694 + 1 NA Intergenic Intergenic 193999 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 171.667-15 chr12 8476989 8477291 + 1 NA intron (NM_001007033, intron 5 of 5) intron (NM_001007033, intron 5 of 5) 21178 NM_001317999 93978 Hs.591147 NM_001007033 ENSG00000205846 CLEC6A CLEC4N|CLECSF10|dectin-2 C-type lectin domain containing 6A protein-coding 172.5-19 chr14 29905958 29906175 + 1 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 21030 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 165.833-53 chr6 101330919 101331220 + 1 NA Intergenic (TTTTCTT)n|Simple_repeat|Simple_repeat -67916 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 164.5-65 chrX 38655427 38655721 + 1 NA intron (NM_004615, intron 1 of 7) intron (NM_004615, intron 1 of 7) 94096 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 165.333-44 chr5 27830716 27830981 + 1 NA Intergenic Intergenic 358556 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 204.833-8 chr11 30207448 30207652 + 1 NA Intergenic Intergenic -23464 NM_000510 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 150.333-87 chr6 9027406 9027732 + 1 NA Intergenic Intergenic 375360 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 351.667-8 chr2 181924248 181924666 + 1 NA intron (NM_006751, intron 16 of 16) intron (NM_006751, intron 16 of 16) -29784 NR_048567 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 128.333-62 chr2 74728671 74728855 + 1 NA Intergenic L1MA4|LINE|L1 74516 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 171.833-33 chr3 196983039 196983483 + 1 NA Intergenic L1MEd|LINE|L1 -14428 NM_025163 80235 Hs.518403 NM_025163 ENSG00000119227 PIGZ GPI-MT-IV|PIG-Z|SMP3 phosphatidylinositol glycan anchor biosynthesis class Z protein-coding 218.333-29 chr5 66686858 66687136 + 1 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) 90604 NM_001290228 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 140.833-30 chr2 99439493 99439866 + 1 NA intron (NR_135652, intron 5 of 21) intron (NR_135652, intron 5 of 21) 50338 NM_016316 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 159.833-18 chr14 44770114 44770474 + 1 NA intron (NR_146457, intron 2 of 4) intron (NR_146457, intron 2 of 4) 28832 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 263.333-2 chr1 116014545 116014854 + 1 NA intron (NM_018420, intron 2 of 11) intron (NM_018420, intron 2 of 11) -37423 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 210.667-23 chr2 7889339 7889673 + 1 NA non-coding (NR_110256, exon 4 of 6) non-coding (NR_110256, exon 4 of 6) 10149 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 244.833-11 chr3 22783891 22784506 + 1 NA Intergenic L1MB8|LINE|L1 418380 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 348.333 chr14 49087546 49088087 + 1 NA Intergenic L2c|LINE|L2 498564 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 118.667-72 chr22 20564028 20564166 + 1 NA intron (NM_001003891, intron 5 of 17) L1MB7|LINE|L1 56050 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 155.167-18 chr15 100468060 100468411 + 1 NA intron (NM_001290341, intron 12 of 13) MIR|SINE|MIR 76051 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 188.667-28 chr2 76744902 76745221 + 1 NA Intergenic Intergenic -240904 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 290.333-3 chr10 124914142 124914794 + 1 NA Intergenic AluSx|SINE|Alu -27655 NM_017580 54764 Hs.595158 NM_017580 ENSG00000019995 ZRANB1 TRABID zinc finger RANBP2-type containing 1 protein-coding 113.667-67 chr2 103589856 103590027 + 1 NA Intergenic Intergenic -605512 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 222.667-3 chr1 92458929 92459323 + 1 NA Intergenic AluSx1|SINE|Alu 24828 NM_001127215 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 165.667-44 chr3 35969465 35969689 + 1 NA Intergenic Intergenic 225101 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 161.667-25 chr11 115619691 115619867 + 1 NA Intergenic Intergenic 114983 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 298.5-4 chr11 41925279 41925705 + 1 NA Intergenic L1MA8|LINE|L1 159966 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 150.333-77 chr4 108389382 108389548 + 1 NA Intergenic L1MD1|LINE|L1 -167768 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 281.833-3 chr16 4740889 4741344 + 1 NA intron (NM_139170, intron 4 of 9) AluY|SINE|Alu 6579 NM_139170 146562 Hs.602738 NM_139170 ENSG00000166246 C16orf71 - chromosome 16 open reading frame 71 protein-coding 215.667-8 chr10 58173570 58173991 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR 94114 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 113.667-32 chr12 18617391 18617627 + 1 NA intron (NM_001288774, intron 31 of 32) MIRc|SINE|MIR 120000 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 151.333-31 chr16 78958798 78958994 + 1 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 641841 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 113.5 chr1 58428145 58428302 + 1 NA Intergenic L1MC5|LINE|L1 118503 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 166.167-4 chr1 240284472 240284910 + 1 NA intron (NM_020066, intron 7 of 17) intron (NM_020066, intron 7 of 17) 192808 NM_001348094 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 193.333-24 chr17 71516788 71517184 + 1 NA Intergenic Intergenic -314807 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 120.167-58 chr3 124150016 124150327 + 1 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 17242 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 137.167-11 chr11 74936294 74936517 + 1 NA intron (NM_001270380, intron 4 of 14) intron (NM_001270380, intron 4 of 14) 12686 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 148.833-24 chr16 84231891 84232163 + 1 NA intron (NM_172347, intron 2 of 2) MIR3|SINE|MIR 7723 NM_172347 93107 Hs.335877 NM_133490 ENSG00000168418 KCNG4 KV6.3|KV6.4 potassium voltage-gated channel modifier subfamily G member 4 protein-coding 195.833-13 chr18 8917633 8918077 + 1 NA Intergenic Harlequin-int|LTR|ERV1 -184844 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 171.667-24 chr14 67986542 67986862 + 1 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 163110 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 143.667-100 chr8 50461567 50461834 + 1 NA intron (NR_135797, intron 8 of 20) L1MC3|LINE|L1 297569 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 189.333-13 chr15 38290024 38290405 + 1 NA intron (NM_152594, intron 1 of 6) intron (NM_152594, intron 1 of 6) 37378 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 307.833-8 chr20 34449104 34449571 + 1 NA intron (NM_001257137, intron 12 of 25) intron (NM_001257137, intron 12 of 25) -16988 NR_030374 693229 NR_030374 ENSG00000207997 MIR644A MIR644|MIRN644|hsa-mir-644|hsa-mir-644a microRNA 644a ncRNA 313.5 chr10 82863446 82864002 + 1 NA intron (NR_163253, intron 5 of 10) intron (NR_163253, intron 5 of 10) -630804 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 131.667-105 chr5 129274504 129274669 + 1 NA Intergenic Intergenic 122561 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 182.333-57 chr5 179571263 179571486 + 1 NA intron (NM_001040452, intron 5 of 17) AluJb|SINE|Alu 11643 NM_001040451 80230 Hs.306769 NM_025158 ENSG00000176783 RUFY1 RABIP4|ZFYVE12 RUN and FYVE domain containing 1 protein-coding 215.333-17 chr16 57452340 57452754 + 1 NA intron (NM_020312, intron 2 of 8) AluSz|SINE|Alu -5019 NM_001308358 57019 Hs.4900 NM_020313 ENSG00000005194 CIAPIN1 Anamorsin|CIAE2|DRE2|PRO0915 cytokine induced apoptosis inhibitor 1 protein-coding 197.667-11 chr12 2792196 2792401 + 1 NA intron (NR_146317, intron 2 of 3) intron (NR_146317, intron 2 of 3) -2672 NM_002014 2288 Hs.524183 NM_002014 ENSG00000004478 FKBP4 FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52 FKBP prolyl isomerase 4 protein-coding 195.333-32 chr3 2718083 2718411 + 1 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -173968 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 262.5-3 chr12 11603830 11604164 + 1 NA Intergenic Intergenic -45857 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 197.333-20 chr15 98239833 98240162 + 1 NA Intergenic Intergenic 91561 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 165.833 chr1 29638626 29638955 + 1 NA Intergenic MIRb|SINE|MIR -288676 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 128.833-71 chr5 94500799 94501191 + 1 NA intron (NM_001145678, intron 5 of 20) AluSq2|SINE|Alu 117609 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 176.333-17 chr12 52501377 52501652 + 1 NA Intergenic AluSg|SINE|Alu -8257 NM_005554 3853 Hs.700779 NM_005554 ENSG00000205420 KRT6A CK-6C|CK-6E|CK6A|CK6C|CK6D|K6A|K6C|K6D|KRT6C|KRT6D|PC3 keratin 6A protein-coding 115.667-101 chr5 126499470 126499703 + 1 NA Intergenic L1ME1|LINE|L1 34436 NM_001146322 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 178.667-31 chr2 158322330 158322519 + 1 NA intron (NM_138803, intron 7 of 13) intron (NM_138803, intron 7 of 13) 134329 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 290.5-16 chr9 76408039 76408611 + 1 NA Intergenic L1MCa|LINE|L1 9726 NR_026890 653162 Hs.655646 NR_026890 RPSAP9 LAMR1P9|RPSA_20_986 ribosomal protein SA pseudogene 9 pseudo 359.167-3 chr6 81156916 81157570 + 1 NA Intergenic L1PB2|LINE|L1 595438 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 397.5 chr2 207573922 207574531 + 1 NA intron (NR_163947, intron 5 of 8) intron (NR_163947, intron 5 of 8) 15104 NM_001371428 321.667-8 chr6 118630304 118630667 + 1 NA intron (NM_001042475, intron 2 of 12) L1MC1|LINE|L1 21106 NM_001042475 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 180.5-32 chr2 176058048 176058308 + 1 NA Intergenic L1MC5|LINE|L1 25784 NM_001080458 344191 Hs.452341 NM_001080458 ENSG00000174279 EVX2 EVX-2 even-skipped homeobox 2 protein-coding 128.667-12 chr1 233829263 233829494 + 1 NA Intergenic L1MB1|LINE|L1 -75298 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 139.333-21 chr11 29633356 29633573 + 1 NA Intergenic Intergenic 14662 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 159.333-59 chr4 113042523 113042871 + 1 NA intron (NM_001354275, intron 2 of 43) L2b|LINE|L2 -6717 NM_001354265 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 224.5-17 chr3 107449583 107450012 + 1 NA intron (NR_110039, intron 1 of 2) intron (NR_110039, intron 1 of 2) 18867 NR_110039 101929607 Hs.252565 NR_110039 ENSG00000273125 LINC01990 - long intergenic non-protein coding RNA 1990 ncRNA 172.667-65 chr5 39193917 39194154 + 1 NA intron (NM_001243093, intron 2 of 18) L1MC4|LINE|L1 25528 NM_001465 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 115.667-126 chrX 41140849 41141001 + 1 NA intron (NM_001039591, intron 7 of 44) intron (NM_001039591, intron 7 of 44) 55480 NM_001039591 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 242.333-4 chr17 80130116 80130510 + 1 NA Intergenic L1MB7|LINE|L1 16815 NM_014740 9775 Hs.389649 NM_014740 ENSG00000141543 EIF4A3 DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII eukaryotic translation initiation factor 4A3 protein-coding 262.167-8 chr17 61805902 61806305 + 1 NA intron (NM_032043, intron 7 of 19) intron (NM_032043, intron 7 of 19) 57456 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 253.833-15 chr7 81634877 81635158 + 1 NA intron (NR_126025, intron 1 of 10) L1ME2|LINE|L1 -8801 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 177.167-47 chr8 126092939 126093318 + 1 NA Intergenic Intergenic -141931 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 114.333-55 chr18 73429657 73429779 + 1 NA Intergenic Intergenic 104777 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 132.833-36 chr2 123745341 123745567 + 1 NA Intergenic L1MB8|LINE|L1 279720 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 199.667-45 chr4 92197268 92197517 + 1 NA Intergenic L1MC4a|LINE|L1 79910 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 156.5-52 chr20 1901780 1902063 + 1 NA intron (NM_001040023, intron 1 of 7) intron (NM_001040023, intron 1 of 7) 6514 NM_001040023 140885 Hs.581021 NM_080792 ENSG00000198053 SIRPA BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP signal regulatory protein alpha protein-coding 155.5-24 chr17 58223288 58223569 + 1 NA Intergenic L1MC4|LINE|L1 -3823 NM_001165927 54903 Hs.408843 NM_017777 ENSG00000011143 MKS1 BBS13|JBTS28|MES|MKS|POC12 MKS transition zone complex subunit 1 protein-coding 189.333-14 chr15 56902533 56902778 + 1 NA intron (NR_015419, intron 2 of 3) L1ME4a|LINE|L1 -15435 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 115.667-86 chr4 76005537 76005798 + 1 NA non-coding (NR_125906, exon 3 of 3) non-coding (NR_125906, exon 3 of 3) 1842 NM_002416 4283 Hs.77367 NM_002416 ENSG00000138755 CXCL9 CMK|Humig|MIG|SCYB9|crg-10 C-X-C motif chemokine ligand 9 protein-coding 191.833-24 chr4 119926690 119927179 + 1 NA Intergenic MIRb|SINE|MIR -12606 NR_121639 100996694 Hs.119926 NR_121639 ENSG00000250392 LINC02502 - long intergenic non-protein coding RNA 2502 ncRNA 149.5-20 chr12 122888399 122888664 + 1 NA intron (NM_024667, intron 1 of 3) intron (NM_024667, intron 1 of 3) 7593 NM_024667 79720 Hs.507162 NM_024667 ENSG00000139722 VPS37B - VPS37B subunit of ESCRT-I protein-coding 199.667-40 chr3 21220815 21221147 + 1 NA Intergenic Intergenic -184745 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 171.5-33 chr2 100499326 100499616 + 1 NA Intergenic L1PA16|LINE|L1 28989 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 145.667-67 chr3 153184278 153184511 + 1 NA Intergenic Intergenic 22168 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 247.5-7 chr14 61243447 61243772 + 1 NA Intergenic L2c|LINE|L2 37729 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 220.667-31 chr5 110745843 110746140 + 1 NA intron (NM_138773, intron 3 of 7) intron (NM_138773, intron 3 of 7) 6984 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 215.5-17 chr17 77197770 77198050 + 1 NA intron (NM_001143999, intron 8 of 16) intron (NM_001143999, intron 8 of 16) 12697 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 134.5-4 chr1 57816435 57816648 + 1 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -44040 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 162.333-23 chr17 12177527 12177729 + 1 NA Intergenic L1ME3D|LINE|L1 95729 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 171.333-50 chr4 60613681 60614041 + 1 NA Intergenic LTR16|LTR|ERVL -308758 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 234.833-24 chr8 92723628 92723898 + 1 NA intron (NR_046114, intron 1 of 2) intron (NR_046114, intron 1 of 2) 62297 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 171.667-53 chr3 100134041 100134505 + 1 NA intron (NM_001167924, intron 1 of 9) MIR3|SINE|MIR 19343 NM_001167924 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 147.667-80 chr9 31466765 31467033 + 1 NA Intergenic MER41-int|LTR|ERV1 -85409 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 210.667-32 chr3 11367575 11367831 + 1 NA intron (NM_001136031, intron 16 of 17) intron (NM_001136031, intron 16 of 17) 95306 NM_001349236 10533 Hs.38032 NM_006395 ENSG00000197548 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 234.167-9 chr2 73598128 73598394 + 1 NA intron (NM_015120, intron 16 of 22) L3|LINE|CR1 44161 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 158.833-26 chr2 16817403 16817572 + 1 NA Intergenic MIRb|SINE|MIR -151653 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 134.833-72 chr9 74364055 74364418 + 1 NA Intergenic Intergenic -7295 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 587.167 chr4 31951327 31952375 + 1 NA Intergenic (TATAA)n|Simple_repeat|Simple_repeat -45528 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 169.833-12 chr11 114399733 114400179 + 1 NA promoter-TSS (NM_001286047) promoter-TSS (NM_001286047) 555 NM_019021 54494 Hs.715083 NM_019021 ENSG00000180425 C11orf71 URLC7 chromosome 11 open reading frame 71 protein-coding 227.833-13 chr4 492221 492556 + 1 NA intron (NM_133474, intron 1 of 2) MER4-int|LTR|ERV1 6768 NM_133474 170960 Hs.428360 NM_133474 ENSG00000182903 ZNF721 - zinc finger protein 721 protein-coding 248.167-15 chr21 16545467 16545741 + 1 NA intron (NR_136547, intron 2 of 2) intron (NR_136547, intron 2 of 2) 5776 NR_029480 406885 NR_029480 ENSG00000199030 MIRLET7C LET7C|MIRNLET7C|hsa-let-7c|let-7c microRNA let-7c ncRNA 155.333-44 chr2 30143733 30144045 + 1 NA Intergenic L1ME3G|LINE|L1 -3118 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 133.5-57 chr5 77828489 77828718 + 1 NA Intergenic L1MB8|LINE|L1 -52242 NM_001297740 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 185.167-30 chr4 60347805 60348282 + 1 NA Intergenic Intergenic -574576 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 236.667 chr1 10275031 10275472 + 1 NA intron (NM_001365951, intron 10 of 48) intron (NM_001365951, intron 10 of 48) -23715 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 211.333-43 chr6 1787131 1787610 + 1 NA intron (NM_001253846, intron 7 of 10) intron (NM_001253846, intron 7 of 10) 177455 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 156.167-45 chr4 10049500 10049836 + 1 NA Intergenic Intergenic -9420 NM_001001290 56606 Hs.444612 NM_020041 ENSG00000109667 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 member 9 protein-coding 233.667-23 chr5 166519056 166519304 + 1 NA Intergenic Intergenic 407190 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 232.667 chr1 2371320 2371662 + 1 NA intron (NM_001301060, intron 8 of 10) L1MB7|LINE|L1 -18830 NR_024489 100129534 Hs.655313 NM_001127577 ENSG00000269896 LOC100129534 - small nuclear ribonucleoprotein polypeptide N pseudogene pseudo 117.667-125 chr8 131725134 131725266 + 1 NA Intergenic Intergenic -178893 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 204.333-6 chr10 71845490 71845922 + 1 NA intron (NM_001042465, intron 1 of 14) intron (NM_001042465, intron 1 of 14) 5545 NM_002778 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 162.5-10 chr11 22891344 22891659 + 1 NA Intergenic Intergenic -31027 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 121.333-111 chr8 122416767 122417144 + 1 NA non-coding (NR_131202, exon 3 of 4) non-coding (NR_131202, exon 3 of 4) 151689 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 134.833-5 chr1 189403104 189403357 + 1 NA Intergenic Intergenic 1072780 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 509.5-2 chr7 19264117 19264866 + 1 NA Intergenic Intergenic -119070 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 226.333-15 chr17 68775499 68776008 + 1 NA Intergenic Intergenic 147599 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 181.167-2 chr1 176287644 176287913 + 1 NA Intergenic L1PA15|LINE|L1 -80492 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 267.333-22 chr7 100444914 100445298 + 1 NA Intergenic Intergenic -8609 NM_145030 221908 Hs.413359 NM_145030 ENSG00000160813 PPP1R35 C7orf47 protein phosphatase 1 regulatory subunit 35 protein-coding 243.5-29 chr7 54865130 54865527 + 1 NA Intergenic Intergenic 106015 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 193.5-11 chr12 75628002 75628534 + 1 NA Intergenic Intergenic -116659 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 185.333-64 chr8 144246365 144246658 + 1 NA intron (NM_001288814, intron 27 of 41) intron (NM_001288814, intron 27 of 41) 16226 NR_107057 102465906 NR_107057 ENSG00000284054 MIR7112 MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2 microRNA 7112 ncRNA 149.333-80 chr6 18848914 18849273 + 1 NA Intergenic Intergenic 277309 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 153.5-81 chrX 82183463 82183686 + 1 NA Intergenic L1PB4|LINE|L1 981472 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 195.5-23 chr2 37819992 37820242 + 1 NA Intergenic Intergenic 9594 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 217.333-26 chr4 102711974 102712457 + 1 NA intron (NM_005908, intron 5 of 16) intron (NM_005908, intron 5 of 16) 48753 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 220.833-26 chr9 119866894 119867127 + 1 NA Intergenic L1PA16|LINE|L1 -68050 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 331.333-9 chr5 55647725 55648173 + 1 NA intron (NM_001258287, intron 9 of 13) L1MB8|LINE|L1 45104 NM_001258286 153129 Hs.742101 NM_173514 ENSG00000177058 SLC38A9 URLC11 solute carrier family 38 member 9 protein-coding 141.5-62 chr3 135297338 135297607 + 1 NA Intergenic L3|LINE|CR1 502212 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 309.667-2 chr2 148584160 148584864 + 1 NA Intergenic AluY|SINE|Alu -60239 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 131.167-42 chr2 167903557 167903888 + 1 NA intron (NR_131227, intron 1 of 4) intron (NR_131227, intron 1 of 4) 37422 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 315.167-8 chr16 82457425 82457994 + 1 NA Intergenic L1ME3|LINE|L1 -169260 NM_001220488 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 185.333-22 chr16 80523277 80523753 + 1 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -17219 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 304.667-2 chr10 17364313 17364757 + 1 NA intron (NM_001004470, intron 3 of 7) intron (NM_001004470, intron 3 of 7) -22401 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 169.5-39 chr20 54659906 54660102 + 1 NA Intergenic MER4A1_|LTR|ERV1 184411 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 239.667-30 chr7 117067674 117067983 + 1 NA intron (NR_161419, intron 1 of 15) intron (NR_161419, intron 1 of 15) 22953 NR_109980 93654 Hs.628891 NR_002331 ENSG00000226367 ST7-AS2 ST7AS2|ST7OT2 ST7 antisense RNA 2 ncRNA 168.667-18 chr14 50068674 50068939 + 1 NA intron (NR_131171, intron 2 of 8) 7SK|RNA|RNA 36237 NR_131171 196913 Hs.406934 NM_001014830 LINC01599 C14orf183 long intergenic non-protein coding RNA 1599 ncRNA 157.833-23 chr14 49965757 49966218 + 1 NA promoter-TSS (NR_106724) promoter-TSS (NR_106724) -412 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 245.833-12 chr3 21432287 21432660 + 1 NA intron (NM_024697, intron 5 of 7) intron (NM_024697, intron 5 of 7) 26747 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 201.333-9 chr10 131714722 131714951 + 1 NA Intergenic L1MA8|LINE|L1 75363 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 219.5-25 chr21 43915551 43915817 + 1 NA intron (NM_001369881, intron 2 of 9) AluSz|SINE|Alu -1104 NM_001369880 56894 Hs.248785 NM_020132 ENSG00000160216 AGPAT3 1-AGPAT 3|LPAAT-GAMMA1|LPAAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 154.5-45 chr22 40517158 40517462 + 1 NA intron (NM_020831, intron 3 of 14) intron (NM_020831, intron 3 of 14) -4490 NR_109965 101927257 Hs.662725 NR_109965 ENSG00000232564 MRTFA-AS1 - MRTFA antisense RNA 1 ncRNA 283.167-2 chr12 56592393 56592975 + 1 NA 3' UTR (NM_002898, exon 14 of 14) 3' UTR (NM_002898, exon 14 of 14) 37642 NM_001300905 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding 186.667-47 chr20 54198244 54198670 + 1 NA Intergenic L2b|LINE|L2 -9630 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 197.5-5 chr1 158456362 158456740 + 1 NA Intergenic L1PA17|LINE|L1 -9011 NM_001004473 391109 Hs.690410 NM_001004473 ENSG00000173285 OR10K1 OR1-6 olfactory receptor family 10 subfamily K member 1 protein-coding 229.667-13 chr18 22647425 22647694 + 1 NA Intergenic Intergenic 139278 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 205.667-51 chr6 79313561 79314114 + 1 NA promoter-TSS (NR_130915) promoter-TSS (NR_130915) -453 NR_130915 80078 NR_130915 ENSG00000286042 LCAL1 onco-lncRNA-27 lung cancer associated lncRNA 1 ncRNA 155.5-33 chr2 221113221 221113493 + 1 NA Intergenic Intergenic 458947 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 176.5-35 chr20 9999326 9999677 + 1 NA intron (NR_109861, intron 1 of 1) intron (NR_109861, intron 1 of 1) 13168 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 357.667-4 chr4 35290064 35290603 + 1 NA Intergenic (AATAT)n|Simple_repeat|Simple_repeat 953606 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 136.833-24 chr14 83977328 83977511 + 1 NA Intergenic Intergenic -1294513 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 194.5-20 chr2 132682111 132682468 + 1 NA intron (NM_207481, intron 17 of 17) intron (NM_207481, intron 17 of 17) -10763 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 381.667-2 chr12 39867742 39868466 + 1 NA intron (NM_052885, intron 5 of 9) intron (NM_052885, intron 5 of 9) 237977 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 184.167-11 chr10 98686096 98686340 + 1 NA intron (NM_021828, intron 6 of 11) L1ME2z|LINE|L1 238350 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 221.667-30 chr5 102372671 102372943 + 1 NA intron (NM_173488, intron 13 of 13) intron (NM_173488, intron 13 of 13) -76523 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 171.333-51 chr4 76686689 76686882 + 1 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 111234 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 300.833-4 chr2 28135351 28135878 + 1 NA intron (NM_199193, intron 8 of 13) L2c|LINE|L2 71347 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 208.667-45 chr8 133173657 133174025 + 1 NA Intergenic Ricksha_b|DNA|MULE-MuDR -17198 NR_037944 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 119.167-8 chr10 15227344 15227613 + 1 NA intron (NM_001010924, intron 5 of 7) AluJb|SINE|Alu -58785 NM_001308295 9397 Hs.60339 NM_004808 ENSG00000152465 NMT2 - N-myristoyltransferase 2 protein-coding 285.5-3 chr11 47917328 47917781 + 1 NA Intergenic AluSz6|SINE|Alu -63005 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 269.833-4 chr11 62712210 62712515 + 1 NA TTS (NM_001079559) TTS (NM_001079559) -2743 NR_037949 26580 Hs.533709 NM_032667 ENSG00000168000 BSCL2 GNG3LG|HMN5|PELD|SPG17 BSCL2 lipid droplet biogenesis associated, seipin protein-coding 208.5-39 chr5 106615492 106615812 + 1 NA Intergenic L1MC3|LINE|L1 395362 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 163.167-10 chr14 77767281 77767461 + 1 NA intron (NR_161324, intron 1 of 1) MER77B|LTR|ERVL -6215 NM_012245 22938 Hs.445498 NM_012245 ENSG00000100603 SNW1 Bx42|FUN20|NCOA-62|PRPF45|Prp45|SKIIP|SKIP|SKIP1 SNW domain containing 1 protein-coding 118.5-32 chr14 77319397 77319526 + 1 NA intron (NM_013382, intron 1 of 20) LTR40c|LTR|ERVL 1421 NM_013382 29954 Hs.132989 NM_013382 ENSG00000009830 POMT2 LGMD2N|LGMDR14|MDDGA2|MDDGB2|MDDGC2 protein O-mannosyltransferase 2 protein-coding 201.5-19 chr2 118076661 118076907 + 1 NA Intergenic Intergenic -11634 NM_001321333 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 172.667-69 chr6 127177667 127177992 + 1 NA intron (NM_032784, intron 4 of 4) intron (NM_032784, intron 4 of 4) 59158 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 157.5-57 chr5 140858822 140859008 + 1 NA 3' UTR (NM_031859, exon 1 of 1) 3' UTR (NM_031859, exon 1 of 1) 3018 NM_031859 56139 Hs.199343 NM_018901 ENSG00000250120 PCDHA10 CNR8|CNRN8|CNRS8|CRNR8|PCDH-ALPHA10 protocadherin alpha 10 protein-coding 310.5-9 chr2 187385350 187385927 + 1 NA intron (NM_001369435, intron 4 of 15) intron (NM_001369435, intron 4 of 15) 62614 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 277.5-16 chr8 118818903 118819252 + 1 NA Intergenic Intergenic 132808 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 227.167-26 chr5 56146700 56147127 + 1 NA intron (NM_024669, intron 6 of 11) intron (NM_024669, intron 6 of 11) 86417 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 201.167-9 chr14 60020703 60020931 + 1 NA intron (NR_075071, intron 26 of 32) L1MB8|LINE|L1 -71094 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 224.167-17 chr3 196727257 196727880 + 1 NA intron (NM_017861, intron 3 of 5) intron (NM_017861, intron 3 of 5) -12289 NM_002577 5062 Hs.518530 NM_002577 ENSG00000180370 PAK2 PAK65|PAKgamma p21 (RAC1) activated kinase 2 protein-coding 191.667-35 chr3 77407879 77408155 + 1 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 310005 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 126.833-58 chr6 133955859 133956014 + 1 NA intron (NM_004865, intron 1 of 6) intron (NM_004865, intron 1 of 6) 2712 NM_004865 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 405.833-3 chr7 24462296 24463059 + 1 NA Intergenic MIR|SINE|MIR -110775 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 312.333-9 chr3 83608826 83609251 + 1 NA Intergenic Intergenic 1260537 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 321.833-5 chr20 59320506 59320966 + 1 NA intron (NM_207032, intron 2 of 4) intron (NM_207032, intron 2 of 4) 20125 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 138.5-32 chr15 94976204 94976379 + 1 NA Intergenic L1MC5|LINE|L1 120928 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 196.333 chr1 25071812 25072159 + 1 NA Intergenic Intergenic 48482 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 114.667-34 chr15 81213734 81213887 + 1 NA intron (NM_001352686, intron 1 of 18) L1P4a|LINE|L1 14334 NM_001352686 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 231.167-12 chr2 116412536 116412782 + 1 NA Intergenic MLT1G1|LTR|ERVL-MaLR 1068844 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 194.833-7 chr13 25509159 25509378 + 1 NA intron (NM_016529, intron 2 of 36) Arthur1|DNA|hAT-Tip100 40494 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 258.333-28 chr5 76669219 76669629 + 1 NA intron (NM_006633, intron 23 of 35) intron (NM_006633, intron 23 of 35) -42979 NR_028375 100302746 NR_028375 NCRUPAR NCRNA00193|ncR-uPAR non-protein coding RNA, upstream of F2R/PAR1 ncRNA 174.333-59 chr7 41667019 41667430 + 1 NA Intergenic MIRb|SINE|MIR -26695 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 165.333-50 chr5 131909912 131910294 + 1 NA intron (NM_001303622, intron 8 of 12) L1MA2|LINE|L1 35560 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 261.333-32 chr9 27574877 27575205 + 1 NA Intergenic MER65C|LTR|ERV1 -1175 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 191.5-49 chr7 83866666 83866965 + 1 NA Intergenic Intergenic -217676 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 205.667-23 chr16 6181470 6181760 + 1 NA intron (NM_018723, intron 1 of 15) LTR84a|LTR|ERVL 161912 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 125.5-11 chr11 86885115 86885289 + 1 NA intron (NR_120592, intron 2 of 2) intron (NR_120592, intron 2 of 2) -27248 NR_045004 8587 Hs.741959 NR_045004 ENSG00000255203 OR7E2P OR11-6|OR7E143P|OR7E51P|OR7E52P|OR7F2P|OST245|hg94 olfactory receptor family 7 subfamily E member 2 pseudogene pseudo 131.5-65 chr5 78006901 78007120 + 1 NA intron (NM_003664, intron 26 of 26) intron (NM_003664, intron 26 of 26) 48763 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 208.667-47 chr9 136189664 136190094 + 1 NA Intergenic Intergenic 11795 NM_001363746 8022 Hs.148427 NM_014564 ENSG00000107187 LHX3 CPHD3|LIM3|M2-LHX3 LIM homeobox 3 protein-coding 284.667-11 chr3 112970839 112971180 + 1 NA intron (NM_138806, intron 1 of 7) intron (NM_138806, intron 1 of 7) 4094 NM_138939 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 351.667-9 chr2 185007188 185007846 + 1 NA Intergenic L1MCb|LINE|L1 159555 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 163.667-21 chr14 53465454 53465935 + 1 NA Intergenic L1M1|LINE|L1 312340 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 133.333-13 chr10 44026372 44026553 + 1 NA Intergenic L1MEd|LINE|L1 114060 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 152.667-42 chr2 50571424 50571719 + 1 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 124691 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 119.333-25 chr13 56306448 56306589 + 1 NA Intergenic Intergenic -834400 NM_001130404 729233 Hs.723090 NM_001130404 ENSG00000204918 PRR20B PRR20|PRR20A|PRR20C|PRR20D|PRR20E proline rich 20B protein-coding 124.667-26 chr12 65919919 65920063 + 1 NA intron (NM_001300918, intron 3 of 4) Tigger12|DNA|TcMar-Tigger -37666 NR_158985 100129940 Hs.685856 NR_120478 ENSG00000197301 HMGA2-AS1 - HMGA2 antisense RNA 1 ncRNA 204.167-3 chr1 171922502 171922741 + 1 NA intron (NM_001278252, intron 2 of 14) L1MB8|LINE|L1 58429 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 217.667-18 chr17 58726572 58726794 + 1 NA intron (NM_058216, intron 7 of 8) (TA)n|Simple_repeat|Simple_repeat -29171 NM_014906 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 318.333-3 chr2 192184815 192185422 + 1 NA intron (NM_001305134, intron 2 of 9) intron (NM_001305134, intron 2 of 9) 9815 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 119.333-55 chr2 133763708 133763942 + 1 NA Intergenic (TCTTC)n|Simple_repeat|Simple_repeat -195362 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 296.833-8 chr7 3868334 3869111 + 1 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -260963 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 205.333-17 chr17 77348176 77348692 + 1 NA intron (NM_006640, intron 1 of 10) AluSx1|SINE|Alu -24903 NM_001113493 10801 Hs.440932 NM_006640 ENSG00000184640 SEPTIN9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1 septin 9 protein-coding 192.667-25 chr2 138866703 138866940 + 1 NA Intergenic Intergenic -30503 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 165.5-65 chr9 73216022 73216275 + 1 NA Intergenic Intergenic 64283 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 143.5-15 chr12 43258664 43258834 + 1 NA Intergenic Intergenic 103434 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 184.5-5 chr10 34807687 34807990 + 1 NA intron (NM_001184789, intron 1 of 22) intron (NM_001184789, intron 1 of 22) 7458 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 333.5-4 chr5 65186750 65187304 + 1 NA intron (NR_135689, intron 23 of 25) intron (NR_135689, intron 23 of 25) 294893 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 252.667-13 chr2 190202092 190202495 + 1 NA 3' UTR (NM_032321, exon 2 of 2) 3' UTR (NM_032321, exon 2 of 2) 21430 NM_032321 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 138.333-50 chr17 56525209 56525435 + 1 NA Intergenic Intergenic -68377 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 113.5-11 chr10 15651176 15651511 + 1 NA intron (NM_001291494, intron 10 of 28) intron (NM_001291494, intron 10 of 28) 68579 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 145.833-26 chr15 80207819 80208013 + 1 NA intron (NM_001352888, intron 1 of 2) L1MEg|LINE|L1 44297 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 227.333-39 chr6 103413693 103414143 + 1 NA Intergenic Intergenic 1445628 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 270.333-9 chr8 105826557 105827017 + 1 NA intron (NR_125796, intron 2 of 7) intron (NR_125796, intron 2 of 7) 233716 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 221.667-32 chr5 158667531 158667790 + 1 NA Intergenic L1ME3A|LINE|L1 -257887 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 147.667-16 chr12 3217315 3217475 + 1 NA intron (NM_001168320, intron 2 of 7) intron (NM_001168320, intron 2 of 7) 140016 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 207.167-17 chr2 221845415 221845745 + 1 NA Intergenic Charlie25|DNA|hAT-Charlie -271378 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 178.333-36 chr3 194749080 194749339 + 1 NA intron (NR_037891, intron 3 of 3) AluSz|SINE|Alu 19500 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 156.667-36 chr15 39678105 39678308 + 1 NA intron (NM_152597, intron 10 of 11) intron (NM_152597, intron 10 of 11) 97127 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 244.5-24 chr6 52135110 52135563 + 1 NA Intergenic Intergenic -9013 NR_029713 406989 NR_029713 ENSG00000207604 MIR206 MIRN206|miRNA206|mir-206 microRNA 206 ncRNA 284.333-9 chr8 70869995 70870509 + 1 NA Intergenic Intergenic 200913 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 129.5-74 chr6 16027269 16027508 + 1 NA Intergenic L1MC5|LINE|L1 -101698 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 148.333-7 chr1 167767367 167767587 + 1 NA intron (NM_001146191, intron 2 of 2) intron (NM_001146191, intron 2 of 2) 45495 NM_001146191 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 223.333-44 chr8 130651953 130652268 + 1 NA Intergenic Intergenic -208436 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 235.833 chr1 45558766 45559093 + 1 NA intron (NM_001202414, intron 3 of 10) intron (NM_001202414, intron 3 of 10) 8103 NM_153326 10327 Hs.474584 NM_006066 ENSG00000117448 AKR1A1 ALDR1|ALR|ARM|DD3|HEL-S-6 aldo-keto reductase family 1 member A1 protein-coding 171.667-66 chr5 93234445 93234777 + 1 NA Intergenic L1MB1|LINE|L1 336732 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 189.333-57 chr9 89265331 89265550 + 1 NA Intergenic Intergenic -45755 NM_001827 1164 Hs.83758 NM_001827 ENSG00000123975 CKS2 CKSHS2 CDC28 protein kinase regulatory subunit 2 protein-coding 164.167-29 chr2 34867750 34868016 + 1 NA Intergenic L4_C_Mam|LINE|RTE-X 190326 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 133.333-105 chr6 76082239 76082485 + 1 NA Intergenic THE1C-int|LTR|ERVL-MaLR -9684 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 267.167-5 chr12 16780406 16780929 + 1 NA Intergenic L1PA16|LINE|L1 -172453 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 174.5-26 chr3 178934520 178935116 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -74413 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 358.833-2 chr8 63897046 63897912 + 1 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 128049 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 171.5-44 chr3 165734700 165734983 + 1 NA Intergenic L1M2|LINE|L1 102582 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 147.667-18 chr13 95941996 95942186 + 1 NA intron (NM_020121, intron 15 of 38) L1ME3F|LINE|L1 111310 NM_020121 55757 Hs.193226 NM_020121 ENSG00000102595 UGGT2 HUGT2|UGCGL2|UGT2 UDP-glucose glycoprotein glucosyltransferase 2 protein-coding 213.667-43 chr8 122173978 122174530 + 1 NA Intergenic L1ME2|LINE|L1 394390 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 183.667-47 chr3 2203178 2203378 + 1 NA intron (NM_175607, intron 2 of 24) intron (NM_175607, intron 2 of 24) -35551 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 272.333-9 chr14 95033066 95033379 + 1 NA Intergenic L1MB7|LINE|L1 100281 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 126.333-41 chr16 77460659 77461176 + 1 NA Intergenic Intergenic -25883 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 194.333-6 chr11 55359639 55359967 + 1 NA Intergenic L1PREC2|LINE|L1 -8081 NM_001005275 81328 Hs.554529 NM_001005275 ENSG00000181958 OR4A15 OR11-118 olfactory receptor family 4 subfamily A member 15 protein-coding 116.333-22 chr11 47263924 47264123 + 1 NA intron (NM_001130102, intron 6 of 8) intron (NM_001130102, intron 6 of 8) -5352 NM_130470 8567 Hs.82548 NM_003682 ENSG00000110514 MADD DENN|IG20|RAB3GEP MAP kinase activating death domain protein-coding 114.167-63 chr3 27659574 27659779 + 1 NA Intergenic Intergenic 62647 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 186.5-7 chr1 247010291 247010675 + 1 NA intron (NR_037894, intron 1 of 6) L1ME2|LINE|L1 -2426 NR_037892 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 179.333-40 chr3 131684662 131685109 + 1 NA intron (NM_130808, intron 6 of 15) intron (NM_130808, intron 6 of 15) -181914 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 255.5 chr1 169216934 169217273 + 1 NA intron (NR_104229, intron 10 of 12) L1MA9|LINE|L1 110413 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 149.333-74 chr5 26970010 26970551 + 1 NA intron (NM_016279, intron 2 of 11) intron (NM_016279, intron 2 of 11) 68306 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 144.5 chr1 94098117 94098358 + 1 NA intron (NM_000350, intron 6 of 49) intron (NM_000350, intron 6 of 49) 22911 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 120.5-78 chr6 155175754 155175941 + 1 NA intron (NM_012454, intron 8 of 25) intron (NM_012454, intron 8 of 25) -41119 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 123.667-83 chr5 8833750 8833910 + 1 NA Intergenic L1PB3|LINE|L1 -5902 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 244.333-30 chr8 30130245 30130852 + 1 NA intron (NM_001128208, intron 3 of 3) intron (NM_001128208, intron 3 of 3) 14117 NM_001100916 619373 Hs.627194 NM_001100916 ENSG00000177669 MBOAT4 FKSG89|GOAT|OACT4 membrane bound O-acyltransferase domain containing 4 protein-coding 247.667-10 chr18 14728969 14729349 + 1 NA Intergenic L1M5|LINE|L1 -19013 NR_160272 374860 Hs.567889 NM_001145029 ENSG00000180777 ANKRD30B NY-BR-1.1 ankyrin repeat domain 30B protein-coding 303.333-7 chr16 14202181 14202582 + 1 NA intron (NM_001365411, intron 1 of 14) intron (NM_001365411, intron 1 of 14) 15695 NM_001365416 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 142.5-65 chr7 19205497 19205721 + 1 NA Intergenic Intergenic -60188 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 227.667-13 chr2 102779195 102779618 + 1 NA intron (NM_001321346, intron 3 of 3) L1MDa|LINE|L1 17375 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 169.667-14 chr11 128875098 128875362 + 1 NA Intergenic Intergenic -7857 NM_153765 3758 Hs.527830 NM_000220 ENSG00000151704 KCNJ1 KIR1.1|ROMK|ROMK1 potassium voltage-gated channel subfamily J member 1 protein-coding 185.833-16 chr17 42752295 42752751 + 1 NA Intergenic Intergenic -7483 NM_001321081 2145 Hs.194669 NM_001991 ENSG00000108799 EZH1 KMT6B enhancer of zeste 1 polycomb repressive complex 2 subunit protein-coding 244.833-19 chr8 124328213 124328626 + 1 NA intron (NM_194291, intron 2 of 6) intron (NM_194291, intron 2 of 6) 44280 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 131.833-32 chr2 120949819 120949983 + 1 NA intron (NM_005270, intron 3 of 13) intron (NM_005270, intron 3 of 13) 157620 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 188.333-29 chr2 14210379 14210745 + 1 NA Intergenic Intergenic 190396 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 197.333-14 chr14 46646383 46646733 + 1 NA Intergenic Intergenic 5223 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 327.833-7 chr8 47032714 47033183 + 1 NA Intergenic L1PBa|LINE|L1 -156359 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 143.5-31 chr18 2136333 2136516 + 1 NA Intergenic L1MEd|LINE|L1 435081 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 200.667-45 chr5 128064902 128065245 + 1 NA intron (NR_152810, intron 1 of 3) MER5B|DNA|hAT-Charlie 18102 NR_152800 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 165.333-5 chr10 27881720 27881997 + 1 NA intron (NM_001290021, intron 10 of 13) MER5B|DNA|hAT-Charlie 100013 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 244.667-29 chr8 116999484 116999805 + 1 NA intron (NM_001172811, intron 2 of 9) L1MEi|LINE|L1 48669 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 267.5 chr10 29163723 29164205 + 1 NA Intergenic Intergenic -125106 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 254.333-11 chr3 75149619 75149911 + 1 NA Intergenic Intergenic -64711 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 165.667-29 chr17 42523625 42523941 + 1 NA Intergenic L1MB8|LINE|L1 9595 NR_049808 100847046 NR_049808 ENSG00000283929 MIR5010 mir-5010 microRNA 5010 ncRNA 216.667 chr1 9599109 9599603 + 1 NA intron (NM_001010866, intron 4 of 5) AluSz|SINE|Alu 10445 NM_001130924 199953 Hs.632365 NM_001010866 ENSG00000188807 TMEM201 Ima1|NET5|SAMP1 transmembrane protein 201 protein-coding 190.333-9 chr10 81612435 81612709 + 1 NA Intergenic L1ME1|LINE|L1 -262622 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 183.167-18 chr16 74132926 74133295 + 1 NA Intergenic Intergenic 82411 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 192.5-49 chr8 71968397 71968745 + 1 NA intron (NR_033652, intron 4 of 4) intron (NR_033652, intron 4 of 4) 107013 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 334.833-9 chrX 75520385 75520857 + 1 NA intron (NM_144969, intron 1 of 11) intron (NM_144969, intron 1 of 11) 2416 NM_144969 158866 Hs.253211 NM_144969 ENSG00000102383 ZDHHC15 DHHC15|MRX91 zinc finger DHHC-type containing 15 protein-coding 115.667-48 chr2 41309732 41309864 + 1 NA Intergenic Intergenic -567757 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 228.5-17 chr3 13918954 13919321 + 1 NA Intergenic L1PA16|LINE|L1 -13919 NR_036481 100132526 Hs.637770 NR_036481 ENSG00000275340 FGD5P1 - FYVE, RhoGEF and PH domain containing 5 pseudogene 1 pseudo 120.833-34 chr2 144560896 144561130 + 1 NA intron (NR_110570, intron 1 of 2) intron (NR_110570, intron 1 of 2) -36569 NR_136320 105373656 Hs.734683 NR_136320 LOC105373656 - uncharacterized LOC105373656 ncRNA 113.667-15 chr10 32416608 32416786 + 1 NA Intergenic MIRb|SINE|MIR 29359 NR_120660 101929431 Hs.639819 NR_120660 LOC101929431 - uncharacterized LOC101929431 ncRNA 306.333 chr1 55709572 55710111 + 1 NA Intergenic Intergenic 235122 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 139.667-31 chr15 91129033 91129231 + 1 NA intron (NM_001323040, intron 2 of 12) intron (NM_001323040, intron 2 of 12) 27336 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 159.5-27 chr20 16170956 16171240 + 1 NA Intergenic Intergenic -185216 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 137.5-93 chr8 26704227 26704515 + 1 NA Intergenic L1MC2|LINE|L1 125966 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 182.833-19 chr15 60968901 60969470 + 1 NA intron (NM_134261, intron 1 of 10) L1MC4|LINE|L1 260117 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 404.5 chr10 33026983 33028011 + 1 NA Intergenic MIR3|SINE|MIR -69267 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 187.333-17 chr13 63352451 63352790 + 1 NA Intergenic MER61-int|LTR|ERV1 -24526 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 162.333-43 chr20 53980247 53980505 + 1 NA intron (NM_003657, intron 7 of 11) L3|LINE|CR1 78644 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 196.333-57 chr8 119971261 119971750 + 1 NA intron (NM_022783, intron 4 of 8) LTR48B|LTR|ERV1 97783 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 201.833-15 chr5 24647616 24648051 + 1 NA Intergenic Intergenic -2855 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 200.5-18 chr18 3166397 3166834 + 1 NA intron (NM_019856, intron 9 of 36) MIR|SINE|MIR 53353 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 140.667-16 chr11 100474106 100474265 + 1 NA Intergenic L2a|LINE|L2 -213103 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 207.667-9 chr12 132731710 132731978 + 1 NA intron (NM_015114, intron 10 of 12) intron (NM_015114, intron 10 of 12) 21002 NM_001170544 192111 Hs.102558 NM_138575 ENSG00000247077 PGAM5 BXLBV68 PGAM family member 5, mitochondrial serine/threonine protein phosphatase protein-coding 123.333-7 chr1 170535476 170535697 + 1 NA intron (NM_001320252, intron 2 of 6) AluJo|SINE|Alu -2977 NR_125958 101928650 Hs.676662 NR_125958 GORAB-AS1 - GORAB antisense RNA 1 ncRNA 129.167-4 chr1 191780894 191781223 + 1 NA Intergenic LTR53-int|LTR|ERVL -377404 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 164.833-28 chr22 25330152 25330460 + 1 NA Intergenic Intergenic 12049 NR_029395 91353 Hs.651077 NM_001013618 IGLL3P 16.1|IGLL3 immunoglobulin lambda like polypeptide 3, pseudogene pseudo 151.333-101 chrX 6626305 6626552 + 1 NA Intergenic MER44B|DNA|TcMar-Tigger -91310 NM_016379 51481 Hs.170076 NM_016379 ENSG00000169059 VCX3A VCX-8r|VCX-A|VCX3|VCX8R|VCXA variable charge X-linked 3A protein-coding 166.667-56 chr7 53878063 53878297 + 1 NA Intergenic L1MDa|LINE|L1 -66249 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 193.5-13 chr14 30273722 30274009 + 1 NA Intergenic Intergenic -285258 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 148.333-106 chr8 94703323 94703591 + 1 NA intron (NM_017697, intron 15 of 15) intron (NM_017697, intron 15 of 15) -16443 NM_181787 286148 Hs.567828 NM_181787 ENSG00000156162 DPY19L4 - dpy-19 like 4 protein-coding 174.833-8 chr12 116114801 116115111 + 1 NA intron (NM_015335, intron 2 of 30) L1ME1|LINE|L1 33698 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 276.333 chr1 168701762 168702447 + 1 NA intron (NM_001937, intron 2 of 3) intron (NM_001937, intron 2 of 3) 27102 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 118.333-11 chr10 104008598 104008823 + 1 NA intron (NM_001304743, intron 12 of 17) intron (NM_001304743, intron 12 of 17) 39476 NR_030760 100126326 NR_030760 ENSG00000283788 MIR936 MIRN936|hsa-mir-936 microRNA 936 ncRNA 125.5-10 chr11 68584993 68585225 + 1 NA intron (NM_001352358, intron 14 of 22) intron (NM_001352358, intron 14 of 22) -99435 NM_015973 51083 Hs.278959 NM_015973 ENSG00000069482 GAL ETL8|GAL-GMAP|GALN|GLNN|GMAP galanin and GMAP prepropeptide protein-coding 163.667-4 chr1 110111136 110111490 + 1 NA Intergenic LTR16C|LTR|ERVL -1130 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding 205.833-11 chr12 116200943 116201288 + 1 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) -52461 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 288.667-2 chr10 121969188 121969681 + 1 NA intron (NM_001167865, intron 3 of 10) intron (NM_001167865, intron 3 of 10) 5783 NM_017615 54780 Hs.258798 NM_017615 ENSG00000107672 NSMCE4A C10orf86|NS4EA|NSE4A NSE4 homolog A, SMC5-SMC6 complex component protein-coding 144.833-45 chr3 49091550 49091770 + 1 NA intron (NM_001320584, intron 1 of 9) intron (NM_001320584, intron 1 of 9) 1972 NM_001320580 54870 Hs.297389 NM_017730 ENSG00000198218 QRICH1 AB-DIP|VERBRAS glutamine rich 1 protein-coding 248.333-8 chr4 65748052 65748364 + 1 NA Intergenic Intergenic -77713 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 140.5-18 chr12 80025425 80025659 + 1 NA Intergenic L1MA9|LINE|L1 -73995 NM_001368062 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 172.333-75 chr8 111259582 111259865 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -23520 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 211.833-28 chr8 121240930 121241170 + 1 NA Intergenic Intergenic -398296 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 213.667-3 chr10 113553701 113553998 + 1 NA intron (NM_004132, intron 1 of 12) intron (NM_004132, intron 1 of 12) 796 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 193.833-27 chr4 103451279 103451633 + 1 NA Intergenic L2b|LINE|L2 26414 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 176.833-14 chr2 54608235 54608552 + 1 NA intron (NM_178313, intron 2 of 30) intron (NM_178313, intron 2 of 30) 49999 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 161.5-3 chr10 53273389 53273663 + 1 NA Intergenic L1PB2|LINE|L1 -501826 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 200.333-15 chr16 85767247 85767478 + 1 NA Intergenic AluSz|SINE|Alu -16266 NR_161454 404550 Hs.461655 NM_206967 ENSG00000154102 C16orf74 - chromosome 16 open reading frame 74 protein-coding 118.667-61 chr2 114665672 114665820 + 1 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 167802 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 132.333-46 chr18 30598042 30598188 + 1 NA Intergenic Intergenic 299205 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 155.333 chr1 43825177 43825548 + 1 NA intron (NM_001363573, intron 5 of 10) intron (NM_001363573, intron 5 of 10) -13260 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 144.333-77 chr6 163995252 163995556 + 1 NA Intergenic Intergenic -323920 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 159.667-95 chr8 130825519 130825693 + 1 NA intron (NM_001115, intron 12 of 17) LTR86C|LTR|ERVL 215303 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 176.833-32 chr7 39340267 39340727 + 1 NA intron (NM_001370959, intron 5 of 9) intron (NM_001370959, intron 5 of 9) -11363 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 216.333-26 chr21 14158374 14158638 + 1 NA intron (NM_001303000, intron 7 of 9) L1MD2|LINE|L1 48443 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 182.833-21 chr18 3577517 3577801 + 1 NA intron (NM_001242762, intron 5 of 9) intron (NM_001242762, intron 5 of 9) -16455 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 434.667 chr11 84422584 84423237 + 1 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -105571 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 185.5-53 chr8 138701815 138702111 + 1 NA intron (NM_152888, intron 31 of 64) L1ME4b|LINE|L1 -204233 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 178.5-54 chr4 42493276 42493674 + 1 NA intron (NM_001105529, intron 23 of 35) intron (NM_001105529, intron 23 of 35) 95987 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 192.667-23 chr18 48585272 48585629 + 1 NA intron (NM_001142397, intron 2 of 12).2 intron (NM_001142397, intron 2 of 12).2 46419 NM_001142397 9811 Hs.145230 NM_014772 ENSG00000134030 CTIF Gm672|KIAA0427 cap binding complex dependent translation initiation factor protein-coding 403.833 chr1 183061719 183062188 + 1 NA intron (NM_002293, intron 1 of 27) MIRb|SINE|MIR 38533 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 254.5-4 chr19 11783650 11784044 + 1 NA 3' UTR (NM_152355, exon 4 of 4) 3' UTR (NM_152355, exon 4 of 4) -14676 NM_152356 126069 Hs.631634 NM_152356 ENSG00000177599 ZNF491 - zinc finger protein 491 protein-coding 299.5-9 chr4 33545858 33546406 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger 493761 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 154.667-10 chr10 70833937 70834115 + 1 NA intron (NM_003901, intron 2 of 14) intron (NM_003901, intron 2 of 14) 18078 NM_003901 8879 Hs.499984 NM_003901 ENSG00000166224 SGPL1 NPHS14|S1PL|SPL sphingosine-1-phosphate lyase 1 protein-coding 147.333-84 chr7 52217133 52217398 + 1 NA Intergenic L1MCa|LINE|L1 -818368 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 186.667-28 chr18 32749148 32749461 + 1 NA intron (NM_020805, intron 2 of 8) intron (NM_020805, intron 2 of 8) 23719 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 277.5-12 chr5 78897194 78897614 + 1 NA intron (NM_198709, intron 5 of 7) intron (NM_198709, intron 5 of 7) 87906 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 359.5-3 chr5 10874375 10875022 + 1 NA Intergenic Intergenic -113464 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 197.167-26 chr2 80953187 80953694 + 1 NA Intergenic L1ME3B|LINE|L1 513506 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 209.5-35 chr5 133507744 133508157 + 1 NA intron (NM_015082, intron 3 of 15) Tigger3c|DNA|TcMar-Tigger -80244 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 241.5-14 chr2 144289391 144289814 + 1 NA intron (NM_001354354, intron 1 of 12) L1M4|LINE|L1 4891 NM_001006636 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 177.333-47 chr4 123110405 123110606 + 1 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) 187427 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 159.167-49 chr4 75439649 75439839 + 1 NA Intergenic L1PB1|LINE|L1 69552 NR_103725 25898 Hs.48297 NM_015436 ENSG00000163743 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1 protein-coding 271.667-10 chr3 3782746 3783108 + 1 NA intron (NR_149025, intron 2 of 5) MLT2A2|LTR|ERVL -16504 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 209.833-25 chr7 138386878 138387203 + 1 NA Intergenic Intergenic -73219 NM_015905 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 142.333-28 chr13 55712655 55712822 + 1 NA Intergenic L1M3|LINE|L1 538284 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 153.667-46 chr20 56588833 56589063 + 1 NA intron (NR_136537, intron 4 of 5) MLT1D|LTR|ERVL-MaLR 11385 NR_136537 105372682 Hs.517135 NR_136537 ENSG00000225657 LINC01716 - long intergenic non-protein coding RNA 1716 ncRNA 235.5-37 chr9 29041369 29041825 + 1 NA intron (NM_001354574, intron 1 of 5) L1MD2|LINE|L1 -152642 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 207.167-24 chr4 123818597 123818913 + 1 NA intron (NR_027106, intron 1 of 2) intron (NR_027106, intron 1 of 2) 44491 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 144.167-69 chr7 93230725 93230993 + 1 NA intron (NM_001346642, intron 1 of 9) intron (NM_001346642, intron 1 of 9) 1339 NM_001346642 253012 Hs.443169 NM_198151 ENSG00000188175 HEPACAM2 MIKI HEPACAM family member 2 protein-coding 117.333-102 chr8 14291523 14291706 + 1 NA intron (NM_001322879, intron 2 of 6) intron (NM_001322879, intron 2 of 6) 561896 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 321.667-7 chr5 42312317 42312781 + 1 NA Intergenic Intergenic -110890 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 277.667-19 chr9 28071245 28071768 + 1 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -497640 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 263.833-5 chr12 90071621 90072073 + 1 NA Intergenic L2c|LINE|L2 124154 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 274.667-8 chr18 41224561 41224886 + 1 NA Intergenic THE1A-int|LTR|ERVL-MaLR 295954 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 141.5-77 chr6 51935096 51935329 + 1 NA intron (NM_138694, intron 36 of 66) MLT1N2|LTR|ERVL-MaLR 152401 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 239.5-4 chr1 228518073 228518427 + 1 NA Intergenic Intergenic -5962 NM_001287262 100129094 Hs.730208 NM_001287262 BTNL10 BTN4|BUTR1 butyrophilin like 10 protein-coding 249.5-23 chr3 103569838 103570180 + 1 NA Intergenic L1ME4a|LINE|L1 -45893 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 158.667-94 chr9 6778270 6778532 + 1 NA intron (NR_148680, intron 1 of 21) intron (NR_148680, intron 1 of 21) 21051 NM_001354000 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 143.5-25 chr14 61743469 61743655 + 1 NA intron (NM_181054, intron 12 of 13) intron (NM_181054, intron 12 of 13) 5527 NR_045406 100750247 Hs.597216 NR_045406 HIF1A-AS2 3'aHIF-1A|aHIF HIF1A antisense RNA 2 ncRNA 116.333-84 chr5 102920601 102920755 + 1 NA intron (NR_157231, intron 6 of 14) intron (NR_157231, intron 6 of 14) 54855 NM_138822 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 211.333-42 chr5 175026122 175026419 + 1 NA Intergenic Intergenic -30539 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 200.333-39 chr8 117105916 117106229 + 1 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -28923 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 252.333-25 chr8 82057540 82058175 + 1 NA Intergenic MER31A|LTR|ERV1 -215571 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 117.667-55 chr18 8520354 8520583 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -88977 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 288.5-3 chr17 35297517 35297850 + 1 NA Intergenic LTR19A|LTR|ERV1 54611 NM_144975 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 228.333-3 chr1 204055241 204055539 + 1 NA Intergenic AluSx|SINE|Alu -14126 NR_027902 284573 Hs.406979 NR_027902 ENSG00000176754 LINC00303 C1orf157|NCRNA00303 long intergenic non-protein coding RNA 303 ncRNA 125.667-76 chr3 19574818 19574986 + 1 NA Intergenic MER47A|DNA|TcMar-Tigger -259971 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 143.167-53 chr3 189705471 189705649 + 1 NA intron (NM_003722, intron 1 of 13) intron (NM_003722, intron 1 of 13) 74171 NM_001114978 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 186.667-55 chr3 105171293 105171756 + 1 NA Intergenic Intergenic -195189 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 229.667-25 chr4 104908396 104908728 + 1 NA Intergenic Intergenic -237313 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 175.5-61 chr8 92721362 92721637 + 1 NA intron (NR_046114, intron 1 of 2) L1PA15|LINE|L1 64561 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 288.167-8 chr4 161630818 161631175 + 1 NA intron (NM_001128428, intron 7 of 14) intron (NM_001128428, intron 7 of 14) -391737 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 140.333-48 chr3 96131878 96132127 + 1 NA Intergenic Intergenic -227962 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 119.5-77 chr5 35886884 35887034 + 1 NA Intergenic L1ME3G|LINE|L1 30068 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 166.667-24 chr2 102952235 102952490 + 1 NA Intergenic Intergenic 32067 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 217.167-3 chr11 15374583 15374990 + 1 NA Intergenic Intergenic 225684 NM_001278315 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 172.167-44 chr5 173998907 173999119 + 1 NA intron (NM_001144954, intron 2 of 4) intron (NM_001144954, intron 2 of 4) 9843 NM_001144954 133491 Hs.131469 NM_001144954 ENSG00000185056 C5orf47 - chromosome 5 open reading frame 47 protein-coding 259.333-4 chr12 3707628 3708050 + 1 NA intron (NM_001144958, intron 3 of 19) MIRc|SINE|MIR 45270 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 274.667-19 chr9 102738350 102738732 + 1 NA Intergenic L2|LINE|L2 218904 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 278.5-10 chr4 153842494 153842925 + 1 NA Intergenic Intergenic -53626 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 121.333-24 chr13 93202524 93202679 + 1 NA Intergenic LTR37-int|LTR|ERV1 -24206 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 158.667-13 chr10 84002893 84003068 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -136529 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 125.5-65 chr5 126873545 126873684 + 1 NA intron (NM_178450, intron 4 of 4) MER5A1|DNA|hAT-Charlie 96478 NM_005573 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 149.333-67 chr3 173817095 173817313 + 1 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) 103592 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 240.5-8 chr20 63299591 63300054 + 1 NA intron (NM_020882, intron 3 of 35) (AT)n|Simple_repeat|Simple_repeat 6636 NM_020882 57642 Hs.271285 NM_020882 ENSG00000101203 COL20A1 - collagen type XX alpha 1 chain protein-coding 271.167-6 chr12 2448590 2448894 + 1 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 178966 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 139.5-61 chr6 109005622 109005876 + 1 NA intron (NM_014454, intron 1 of 9) intron (NM_014454, intron 1 of 9) 3239 NM_001199934 27244 Hs.591336 NM_014454 ENSG00000080546 SESN1 PA26|SEST1 sestrin 1 protein-coding 238.5-34 chr8 113682653 113683072 + 1 NA Intergenic Intergenic -245923 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 192.167-5 chr10 83109282 83109747 + 1 NA Intergenic L1PA13|LINE|L1 567575 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 170.667-82 chr8 141937034 141937347 + 1 NA Intergenic Intergenic -150877 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 160.667-27 chr15 58481104 58481324 + 1 NA intron (NR_120338, intron 2 of 2) L1ME4b|LINE|L1 17521 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 186.5-21 chr12 40291793 40292022 + 1 NA intron (NM_198578, intron 20 of 50) intron (NM_198578, intron 20 of 50) 66910 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 178.5-34 chr16 81921198 81921426 + 1 NA intron (NM_002661, intron 21 of 32) intron (NM_002661, intron 21 of 32) 90158 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 194.667-20 chr12 96865563 96865928 + 1 NA intron (NM_001306084, intron 67 of 67) intron (NM_001306084, intron 67 of 67) -41512 NM_152905 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 179.667-45 chr6 65545140 65545423 + 1 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 34523 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 190.667-23 chr2 177302520 177302910 + 1 NA intron (NR_026966, intron 8 of 8) intron (NR_026966, intron 8 of 8) 11167 NR_106767 102465255 NR_106767 ENSG00000278418 MIR6512 hsa-mir-6512|mir-6512 microRNA 6512 ncRNA 267.667-7 chr12 99106564 99107053 + 1 NA intron (NM_152788, intron 15 of 25) intron (NM_152788, intron 15 of 25) 13449 NR_110095 101928937 Hs.555499 NR_110095 ENSG00000258039 LOC101928937 - uncharacterized LOC101928937 ncRNA 164.167-62 chr8 113241746 113241948 + 1 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 135305 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 161.667 chr1 55803295 55803515 + 1 NA Intergenic Intergenic 141558 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 198.5-41 chr7 88106998 88107339 + 1 NA intron (NM_001324421, intron 4 of 28) intron (NM_001324421, intron 4 of 28) -109492 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 278.5-16 chr9 71424292 71424755 + 1 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 22448 NM_001366141 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 259.167-3 chr19 27346067 27346592 + 1 NA Intergenic ALR/Alpha|Satellite|centr -447102 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 221.5-8 chr11 62998108 62998396 + 1 NA intron (NM_004254, intron 5 of 10) intron (NM_004254, intron 5 of 10) -13285 NM_153276 9356 Hs.369252 NM_004790 ENSG00000197901 SLC22A6 HOAT1|OAT1|PAHT|ROAT1 solute carrier family 22 member 6 protein-coding 288.5-6 chr4 58084618 58085203 + 1 NA Intergenic Intergenic 451418 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 138.167-18 chr14 20726430 20726791 + 1 NA Intergenic LTR38A1|LTR|ERV1 -19277 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 222.333-30 chr5 132179613 132180001 + 1 NA Intergenic Charlie4z|DNA|hAT-Charlie -5069 NR_047470 100861518 Hs.519568 NR_047470 ENSG00000237714 P4HA2-AS1 - P4HA2 antisense RNA 1 ncRNA 151.333-65 chr4 36664000 36664264 + 1 NA Intergenic MIR|SINE|MIR -22232 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 127.667-73 chr5 79289871 79290108 + 1 NA intron (NM_152405, intron 2 of 10) intron (NM_152405, intron 2 of 10) 53858 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 208.833-4 chr10 65748654 65749065 + 1 NA intron (NR_120647, intron 5 of 5) intron (NR_120647, intron 5 of 5) 177434 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 232.667-12 chr16 62203187 62203627 + 1 NA Intergenic Intergenic -166969 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 193.333-4 chr1 149893892 149894279 + 1 NA Intergenic Intergenic -5483 NM_001321025 51027 Hs.13880 NM_016074 ENSG00000178096 BOLA1 CGI-143 bolA family member 1 protein-coding 171.5-60 chr8 82730506 82730736 + 1 NA Intergenic Intergenic -181483 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 168.667 chr1 49821457 49821762 + 1 NA intron (NM_001323575, intron 2 of 12) intron (NM_001323575, intron 2 of 12) 202345 NM_001323573 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 240.333-24 chr6 116760679 116761151 + 1 NA intron (NM_001085480, intron 3 of 3) intron (NM_001085480, intron 3 of 3) 4804 NM_001085480 221303 Hs.126712 NM_001085480 ENSG00000183807 FAM162B C6orf189|bA86F4.2 family with sequence similarity 162 member B protein-coding 218.5-20 chr2 153878740 153879134 + 1 NA intron (NM_052917, intron 1 of 12) intron (NM_052917, intron 1 of 12) 7015 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 262.667-22 chr20 58385188 58385471 + 1 NA Intergenic AluJb|SINE|Alu -3790 NM_004738 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 227.333-6 chr10 63135467 63135750 + 1 NA intron (NM_001282405, intron 1 of 2) intron (NM_001282405, intron 1 of 2) 2280 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 223.5-31 chr7 27271808 27272099 + 1 NA Intergenic L1ME1|LINE|L1 -24724 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 140.667-59 chr3 160807307 160807542 + 1 NA intron (NM_139245, intron 1 of 3) intron (NM_139245, intron 1 of 3) -34725 NM_001317911 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 122.667-33 chr16 27996536 27996662 + 1 NA intron (NM_001109763, intron 1 of 6) intron (NM_001109763, intron 1 of 6) 67115 NM_001323901 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 206.667-11 chr11 3624720 3624971 + 1 NA Intergenic L2c|LINE|L2 -1615 NR_002720 7221 Hs.131910 NR_002720 ENSG00000182048 TRPC2 - transient receptor potential cation channel subfamily C member 2 (pseudogene) pseudo 138.5-59 chr5 112114239 112114471 + 1 NA Intergenic Intergenic -46171 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 312.333-6 chr16 84092328 84092781 + 1 NA intron (NM_003791, intron 6 of 22) intron (NM_003791, intron 6 of 22) 24388 NM_003791 8720 Hs.75890 NM_003791 ENSG00000140943 MBTPS1 PCSK8|S1P|SEDKF|SKI-1 membrane bound transcription factor peptidase, site 1 protein-coding 198.333-9 chr13 49278510 49278835 + 1 NA intron (NR_036439, intron 6 of 8) intron (NR_036439, intron 6 of 8) 30747 NR_036439 81602 Hs.388220 NM_030911 ENSG00000102543 CDADC1 NYD-SP15|bA103J18.1 cytidine and dCMP deaminase domain containing 1 protein-coding 138.333-60 chr2 78942358 78942533 + 1 NA Intergenic L1ME3D|LINE|L1 -83257 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 380.333-3 chr5 96458777 96459477 + 1 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -25879 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 127.5-15 chr11 75922290 75922434 + 1 NA intron (NM_003369, intron 6 of 14) L1M5|LINE|L1 107152 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 283.333-5 chr21 21140791 21141252 + 1 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) -6141 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 159.667-50 chr2 66761851 66762138 + 1 NA Intergenic MIRc|SINE|MIR -58767 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 240.667-29 chr4 37128229 37128535 + 1 NA Intergenic L1MEc|LINE|L1 113609 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 153.833-69 chr9 109140789 109141345 + 1 NA intron (NM_014334, intron 4 of 4) intron (NM_014334, intron 4 of 4) -21120 NM_032012 23731 Hs.308074 NM_032012 ENSG00000106771 TMEM245 C9orf5|CG-2|CG2 transmembrane protein 245 protein-coding 159.667-68 chr5 42125588 42125812 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 49645 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 198.833-5 chr12 5193923 5194428 + 1 NA Intergenic FRAM|SINE|Alu 48976 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 168.833-50 chr8 101099117 101099634 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR 47321 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 320.667-2 chr14 75605267 75605860 + 1 NA promoter-TSS (NM_001195283) promoter-TSS (NM_001195283) 23 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 264.5-17 chr7 106216063 106216327 + 1 NA Intergenic Intergenic 68788 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 171.667-19 chr14 29118779 29118998 + 1 NA Intergenic Intergenic -333101 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 162.333-38 chr2 211564064 211564374 + 1 NA intron (NM_001042599, intron 19 of 26) HAL1|LINE|L1 862141 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 190.667-20 chr18 38740774 38741174 + 1 NA Intergenic Intergenic 881201 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 147.5-84 chr8 117526435 117526710 + 1 NA intron (NM_001282986, intron 1 of 2) L1ME4b|LINE|L1 5859 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 123.5-77 chr7 85233746 85233961 + 1 NA Intergenic L1MC4|LINE|L1 -111922 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 161.833-7 chr12 133116315 133116507 + 1 NA Intergenic Intergenic 14062 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 300.5-3 chr11 111254286 111254756 + 1 NA intron (NM_198498, intron 1 of 4) MIRc|SINE|MIR 8796 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 136.333-66 chr4 37365495 37365737 + 1 NA intron (NM_001144990, intron 3 of 6) intron (NM_001144990, intron 3 of 6) -88309 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 281.833-5 chr18 12939670 12940125 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL -8087 NM_031216 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 264.167-5 chr10 76210260 76210592 + 1 NA intron (NM_001305581, intron 5 of 6) L2c|LINE|L2 427665 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 240.167-11 chr20 23357850 23358249 + 1 NA promoter-TSS (NR_109884) promoter-TSS (NR_109884) 78 NR_109884 100505683 Hs.140295 NR_109884 ENSG00000232645 LINC01431 - long intergenic non-protein coding RNA 1431 ncRNA 159.667-51 chr2 70916356 70916598 + 1 NA intron (NM_012476, intron 1 of 2) L1MD2|LINE|L1 15901 NM_012476 25806 Hs.249170 NM_012476 ENSG00000116035 VAX2 DRES93 ventral anterior homeobox 2 protein-coding 173.833-37 chr3 118122642 118122974 + 1 NA Intergenic L1ME1|LINE|L1 -431883 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 168.833-23 chr18 78702884 78703515 + 1 NA Intergenic Intergenic -277076 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 129.5-77 chr6 75079018 75079269 + 1 NA Intergenic L2c|LINE|L2 49639 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 203.5-8 chr11 26760414 26760733 + 1 NA Intergenic Intergenic -38513 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 232.167-22 chr5 146514310 146514636 + 1 NA TTS (NM_194251) TTS (NM_194251) 1640 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 262.333-27 chr5 166833962 166834480 + 1 NA Intergenic Intergenic 92149 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 141.667-104 chr7 69032573 69032741 + 1 NA Intergenic MER5A|DNA|hAT-Charlie 564967 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 157.667-40 chr2 241544150 241544314 + 1 NA TTS (NR_033346) TTS (NR_033346) -14513 NM_032515 666 Hs.293753 NM_032515 ENSG00000176720 BOK BCL2L9|BOKL BCL2 family apoptosis regulator BOK protein-coding 260.667 chr11 115988361 115988720 + 1 NA Intergenic Intergenic -228340 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 188.5-28 chr2 49059837 49060140 + 1 NA TTS (NR_107011) TTS (NR_107011) 385 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 188.833-33 chr6 9630761 9631117 + 1 NA Intergenic MSTA-int|LTR|ERVL-MaLR -773563 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 153.833-24 chr15 37495295 37495757 + 1 NA Intergenic L1MC1|LINE|L1 -394215 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 179.5-29 chr6 26222991 26223242 + 1 NA Intergenic Intergenic -2039 NM_003532 8353 Hs.443021 NM_003532 ENSG00000274750 HIST1H3E H3.1|H3/d|H3FD histone cluster 1 H3 family member e protein-coding 329.667-8 chr6 166118908 166119562 + 1 NA Intergenic Intergenic 21515 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 120.333-93 chr5 31038210 31038474 + 1 NA Intergenic L1PB1|LINE|L1 -155344 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 303.667-5 chr21 21496112 21496467 + 1 NA intron (NM_001352592, intron 16 of 18) L1PA16|LINE|L1 241030 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 161.667-9 chr1 179487108 179487356 + 1 NA intron (NR_073544, intron 17 of 25) intron (NR_073544, intron 17 of 25) 88716 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 228.333-28 chr5 147995167 147995464 + 1 NA Intergenic L1MA10|LINE|L1 -68657 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 316.333-6 chr2 45258260 45258684 + 1 NA Intergenic Intergenic -3531 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 402.167 chr4 38353716 38354400 + 1 NA Intergenic L1PA16|LINE|L1 -12856 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 273.667-23 chr9 112641694 112642011 + 1 NA intron (NM_001287036, intron 3 of 4) HAL1ME|LINE|L1 76265 NM_001329587 58493 Hs.658575 NM_021218 ENSG00000148153 INIP C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 INTS3 and NABP interacting protein protein-coding 163.333-10 chr10 55270303 55270618 + 1 NA intron (NM_001354404, intron 2 of 34) L1PA16|LINE|L1 -328582 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 113.167-67 chr6 74953320 74953661 + 1 NA Intergenic L1PA13|LINE|L1 175292 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 187.667-28 chr2 167167348 167167680 + 1 NA intron (NM_152381, intron 3 of 10) L1MC1|LINE|L1 -19858 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 181.333-42 chr4 104484970 104485176 + 1 NA intron (NR_132741, intron 2 of 2) intron (NR_132741, intron 2 of 2) -5892 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 215.667-16 chr17 27166478 27166872 + 1 NA Intergenic ALR/Alpha|Satellite|centr -77434 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 176.667-30 chr2 40724518 40724948 + 1 NA Intergenic Intergenic -212298 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 158.5-67 chr5 159156776 159157074 + 1 NA TTS (NM_001199381) TTS (NM_001199381) 50723 NM_001199382 153830 Hs.349306 NM_144726 ENSG00000145860 RNF145 - ring finger protein 145 protein-coding 270.667-17 chr3 70046232 70046557 + 1 NA Intergenic Intergenic 46650 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 287.667-9 chr3 81863654 81864287 + 1 NA Intergenic Intergenic -102325 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 203.5-38 chr7 37071294 37071652 + 1 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 73677 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 287.167-6 chr16 2851089 2851591 + 1 NA Intergenic AluJb|SINE|Alu 6830 NM_022119 64063 Hs.459709 NM_022119 ENSG00000005001 PRSS22 BSSP-4|SP001LA|hBSSP-4 serine protease 22 protein-coding 190.167-18 chr15 56361043 56361459 + 1 NA Intergenic L1MC|LINE|L1 -4173 NM_198524 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 220.5-25 chr3 192664155 192664583 + 1 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 63172 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 254.667-10 chr17 48008230 48008703 + 1 NA Intergenic Intergenic -24416 NR_162100 113218499 NR_162100 MIR10226 - microRNA 10226 ncRNA 240.333-34 chrX 26925744 26926151 + 1 NA Intergenic Intergenic 367610 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 181.333-37 chr3 107391951 107392362 + 1 NA Intergenic L2c|LINE|L2 -9997 NR_126332 101929579 Hs.552750 NR_126332 LOC101929579 - uncharacterized LOC101929579 ncRNA 231.333-28 chr5 143826896 143827236 + 1 NA Intergenic Intergenic 14905 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 160.667-42 chr2 169098365 169098608 + 1 NA Intergenic Intergenic 17379 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 233.167-7 chr12 92189525 92189808 + 1 NA Intergenic Intergenic 43581 NR_135036 101928617 Hs.434392 NR_135036 LOC101928617 - uncharacterized LOC101928617 ncRNA 153.5-67 chr7 29365447 29365750 + 1 NA intron (NM_001293071, intron 2 of 11) L2b|LINE|L2 -114114 NM_001293079 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 181.5-5 chr10 73089125 73089469 + 1 NA intron (NM_001142595, intron 1 of 15) L1MD|LINE|L1 7677 NM_001017962 5033 Hs.500047 NM_000917 ENSG00000122884 P4HA1 P4HA prolyl 4-hydroxylase subunit alpha 1 protein-coding 229.667-15 chr2 25830824 25831148 + 1 NA promoter-TSS (NM_001369346) promoter-TSS (NM_001369346) -85 NM_001369346 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 371.333-3 chr6 38281115 38281849 + 1 NA intron (NM_052893, intron 9 of 11) intron (NM_052893, intron 9 of 11) -200114 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 349.5-3 chr20 5098930 5099380 + 1 NA TTS (NM_014145) TTS (NM_014145) 13921 NM_001009923 29058 Hs.472024 NM_014145 ENSG00000089063 TMEM230 C20orf30|HSPC274|dJ1116H23.2.1 transmembrane protein 230 protein-coding 142.667-45 chr2 42095858 42096097 + 1 NA Intergenic Intergenic 47956 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 156.333-46 chr2 46268210 46268722 + 1 NA Intergenic L1MB3|LINE|L1 -28941 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 178.5-62 chr5 153369093 153369434 + 1 NA Intergenic L3|LINE|CR1 -121261 NM_001258019 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 187.5-60 chrX 149477245 149477629 + 1 NA 3' UTR (NM_000202, exon 9 of 9) 3' UTR (NM_000202, exon 9 of 9) 27869 NM_000202 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 241.5-6 chr10 10510500 10510865 + 1 NA intron (NM_001326317, intron 1 of 14) L2a|LINE|L2 48132 NM_001326319 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 203.333-21 chr2 103288942 103289327 + 1 NA Intergenic Intergenic -304705 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 140.833-58 chr7 90303921 90304116 + 1 NA exon (NM_001160138, exon 18 of 23) exon (NM_001160138, exon 18 of 23) -31205 NR_110085 101927446 Hs.734999 NR_110085 ENSG00000105793 LOC101927446 - uncharacterized LOC101927446 ncRNA 190.333-46 chr5 15122748 15122945 + 1 NA Intergenic Intergenic 143714 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 119.667-2 chr1 92085662 92085851 + 1 NA intron (NM_183242, intron 1 of 8) AluJb|SINE|Alu 5411 NM_183242 284697 Hs.676102 NM_183242 ENSG00000189195 BTBD8 - BTB domain containing 8 protein-coding 171.333-29 chr18 63591720 63591995 + 1 NA intron (NM_001348270, intron 3 of 5) intron (NM_001348270, intron 3 of 5) 4514 NM_001348268 5275 Hs.241407 NM_012397 ENSG00000197641 SERPINB13 HSHUR7SEQ|HUR7|PI13|headpin serpin family B member 13 protein-coding 126.833-60 chr7 50818661 50818911 + 1 NA Intergenic Intergenic -25333 NM_001371008 153.833-33 chr2 189539448 189539959 + 1 NA Intergenic AluY|SINE|Alu 41108 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 300.667-11 chr5 29884497 29885278 + 1 NA Intergenic Intergenic 4327 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 142.333-81 chr5 13825508 13825794 + 1 NA intron (NM_001369, intron 38 of 78) L1MB2|LINE|L1 118829 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 177.333-50 chr5 34872334 34872778 + 1 NA intron (NM_001317949, intron 8 of 10) L1ME3G|LINE|L1 33175 NM_001317949 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 189.5-59 chr8 135887866 135888218 + 1 NA Intergenic Intergenic 430586 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 196.667-2 chr1 86874589 86874877 + 1 NA intron (NR_144512, intron 3 of 4) intron (NR_144512, intron 3 of 4) 39393 NM_004261 9403 Hs.362728 NM_004261 ENSG00000183291 SELENOF SEP15 selenoprotein F protein-coding 173.667-8 chr11 41629676 41630094 + 1 NA Intergenic AluJb|SINE|Alu -84683 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 129.5-17 chr12 4689037 4689209 + 1 NA 3' UTR (NM_005002, exon 11 of 11) 3' UTR (NM_005002, exon 11 of 11) 30979 NR_110112 101929549 Hs.663336 NR_110112 ENSG00000255474 GAU1 GALNT8-DT GALNT8 antisense upstream 1 ncRNA 188.167-29 chr3 118909327 118909590 + 1 NA intron (NM_001353325, intron 5 of 7) intron (NM_001353325, intron 5 of 7) -33618 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 166.333-19 chr13 57763516 57763768 + 1 NA Intergenic Intergenic 131898 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 306.833-5 chr8 137405435 137405841 + 1 NA TTS (NR_125428) TTS (NR_125428) 7950 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 264.333-12 chr5 2892886 2893304 + 1 NA Intergenic Intergenic -24759 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 130.667-103 chrX 100075343 100075786 + 1 NA Intergenic Intergenic 334709 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 213.667 chr1 237909068 237909448 + 1 NA intron (NR_027247, intron 8 of 11) L2|LINE|L2 -18336 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 122.333-81 chr4 41141955 41142179 + 1 NA intron (NM_173075, intron 2 of 16) MLT1K|LTR|ERVL-MaLR 72475 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 235.333-28 chr8 111812141 111812644 + 1 NA Intergenic Intergenic 435753 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 128.833-78 chr6 82371212 82371530 + 1 NA Intergenic Intergenic 7127 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 182.667-2 chr1 147260179 147260490 + 1 NA intron (NM_001348461, intron 5 of 20) intron (NM_001348461, intron 5 of 20) 17192 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 121.833-31 chr2 29978431 29978569 + 1 NA Intergenic MLT2B4|LTR|ERVL -56914 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 186.667-23 chr14 72797592 72797838 + 1 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 94934 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 169.667-78 chr9 87696596 87696855 + 1 NA intron (NM_004938, intron 21 of 25) MSTB2|LTR|ERVL-MaLR -29394 NM_001257971 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 178.667-39 chr3 68068520 68068776 + 1 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 64401 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 143.5-42 chr2 144418223 144418382 + 1 NA intron (NM_001171653, intron 3 of 8) intron (NM_001171653, intron 3 of 8) -85233 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 229.667-22 chr3 174179830 174180109 + 1 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -259173 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 183.333-15 chr12 39920181 39920644 + 1 NA intron (NM_052885, intron 4 of 9) intron (NM_052885, intron 4 of 9) 185669 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 170.667-73 chr7 88662877 88663125 + 1 NA Intergenic L1MC3|LINE|L1 -96699 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 266.333-4 chr14 47524902 47525199 + 1 NA intron (NM_001113498, intron 1 of 16) L3|LINE|CR1 149904 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 195.667-34 chr5 116966866 116967132 + 1 NA Intergenic L1MD1|LINE|L1 -204790 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 237.833-19 chr7 144402447 144402705 + 1 NA intron (NM_001080413, intron 2 of 9).2 intron (NM_001080413, intron 2 of 9).2 7651 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 261.5-2 chr11 40544445 40544788 + 1 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -251486 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 198.167-23 chr3 112199710 112200456 + 1 NA intron (NM_001320531, intron 18 of 27).2 intron (NM_001320531, intron 18 of 27).2 66660 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 208.333-8 chr11 9441183 9441575 + 1 NA intron (NM_006391, intron 23 of 24) intron (NM_006391, intron 23 of 24) 12613 NR_002962 677808 Hs.689720 NR_002962 ENSG00000201998 SNORA23 ACA23 small nucleolar RNA, H/ACA box 23 snoRNA 198.5-4 chr11 30496026 30496356 + 1 NA intron (NM_001584, intron 2 of 5) intron (NM_001584, intron 2 of 5) 84302 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 334.833-7 chr8 103454039 103454480 + 1 NA Intergenic Intergenic 38873 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 125.333-87 chr4 44385180 44385478 + 1 NA intron (NM_198353, intron 1 of 1) L1MB3|LINE|L1 63480 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 273.5-14 chr2 97795492 97795915 + 1 NA intron (NM_015348, intron 28 of 40) intron (NM_015348, intron 28 of 40) 61297 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 201.167-4 chr12 33721597 33722011 + 1 NA Intergenic Intergenic -281985 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 170.5-52 chr4 127883946 127884224 + 1 NA intron (NM_014264, intron 4 of 15) L1MC5|LINE|L1 2841 NM_001190801 10733 Hs.172052 NM_014264 ENSG00000142731 PLK4 MCCRP2|SAK|STK18 polo like kinase 4 protein-coding 160.167-22 chr17 17036050 17036236 + 1 NA Intergenic Intergenic -6314 NM_001364716 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 140.833-2 chr1 230143675 230143970 + 1 NA intron (NM_004481, intron 1 of 15) intron (NM_004481, intron 1 of 15) 76584 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 167.333-28 chr17 63328860 63329083 + 1 NA intron (NM_025185, intron 10 of 25) Charlie1a|DNA|hAT-Charlie 111296 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 195.833-17 chr2 152732563 152732974 + 1 NA intron (NR_146430, intron 3 of 4) MER2|DNA|TcMar-Tigger 14131 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 184.333-42 chr4 29614119 29614324 + 1 NA Intergenic AluSz6|SINE|Alu 399929 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 391.5 chr10 31044670 31045754 + 1 NA Intergenic L1MA4A|LINE|L1 -13275 NM_001143770 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 224.333-9 chr14 52802502 52802791 + 1 NA Intergenic L2a|LINE|L2 -11039 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 189.5-19 chr14 72103046 72103316 + 1 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 169654 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 196.333-7 chr14 58164151 58164506 + 1 NA Intergenic Intergenic -12115 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 353.333-4 chr3 117928373 117928972 + 1 NA Intergenic L1MB2|LINE|L1 -237747 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 129.833-29 chr18 1892456 1892701 + 1 NA Intergenic L1MD3|LINE|L1 -532949 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 130.333-20 chr11 79596880 79597127 + 1 NA Intergenic HAL1|LINE|L1 -155973 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 139.167-45 chr2 217632659 217632891 + 1 NA intron (NR_026597, intron 1 of 12) Tigger3a|DNA|TcMar-Tigger 123818 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 334.5-10 chr5 42252335 42252875 + 1 NA Intergenic L1MA6|LINE|L1 -77260 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 230.333-31 chr7 99772051 99772399 + 1 NA intron (NM_017460, intron 4 of 12) L1MD2|LINE|L1 11959 NM_017460 1576 Hs.728751 NM_017460 ENSG00000160868 CYP3A4 CP33|CP34|CYP3A|CYP3A3|CYPIIIA3|CYPIIIA4|HLP|NF-25|P450C3|P450PCN1 cytochrome P450 family 3 subfamily A member 4 protein-coding 193.167-17 chr15 97296667 97296882 + 1 NA Intergenic L1PB4|LINE|L1 225037 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 303.333 chr10 27943058 27943483 + 1 NA intron (NM_001290021, intron 5 of 13) intron (NM_001290021, intron 5 of 13) 38601 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 205.5-8 chr15 57422353 57422662 + 1 NA intron (NM_001252335, intron 2 of 19) intron (NM_001252335, intron 2 of 19) 46002 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 199.333-29 chr3 138758289 138758719 + 1 NA intron (NM_006219, intron 3 of 23) intron (NM_006219, intron 3 of 23) -50883 NM_001256045 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 257.5-16 chr7 3387554 3387890 + 1 NA intron (NM_152744, intron 1 of 44) L1MB3|LINE|L1 86470 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 241.667-23 chr3 89645952 89646315 + 1 NA Intergenic L1ME3A|LINE|L1 538512 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 146.667-13 chr10 20127330 20127537 + 1 NA intron (NM_032812, intron 4 of 13) L3|LINE|CR1 311001 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 182.333-51 chr5 6960375 6960619 + 1 NA Intergenic HAL1|LINE|L1 -132576 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 259.5-11 chr3 70379819 70380261 + 1 NA Intergenic L1MC5a|LINE|L1 -67402 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 154.5-48 chr3 176845122 176845355 + 1 NA Intergenic Intergenic -28237 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 224.667-25 chr4 95306856 95307185 + 1 NA intron (NM_003728, intron 2 of 15) intron (NM_003728, intron 2 of 15) 215529 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 220.667-14 chr18 70061906 70062319 + 1 NA intron (NM_001318520, intron 34 of 47) L1MC4a|LINE|L1 -105313 NM_001303619 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 255.667-6 chr12 45363926 45364432 + 1 NA intron (NM_001025356, intron 8 of 19) L1MB7|LINE|L1 71489 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 318.5-8 chr22 38213730 38214256 + 1 NA intron (NM_001161573, intron 2 of 2) intron (NM_001161573, intron 2 of 2) 10727 NR_132774 106635525 NR_132774 SNORA92 - small nucleolar RNA, H/ACA box 92 snoRNA 203.667-10 chr12 80117918 80118259 + 1 NA intron (NM_001368062, intron 1 of 62) intron (NM_001368062, intron 1 of 62) 18551 NM_001368062 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 204.333-13 chr11 80813768 80814046 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -51104 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 215.667-22 chr19 16360863 16361193 + 1 NA TTS (NR_047666) TTS (NR_047666) 36202 NM_016270 10365 Hs.685136 NM_016270 ENSG00000127528 KLF2 LKLF Kruppel like factor 2 protein-coding 216.5-5 chr12 21426896 21427156 + 1 NA Intergenic (ATAGAT)n|Simple_repeat|Simple_repeat -10629 NM_001350913 79912 Hs.709545 NM_024854 ENSG00000121350 PYROXD1 MFM8 pyridine nucleotide-disulphide oxidoreductase domain 1 protein-coding 240.667-24 chr21 23568015 23568401 + 1 NA Intergenic MER4B|LTR|ERV1 -183373 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 312.333-13 chr8 120039230 120039834 + 1 NA intron (NM_022783, intron 8 of 8) intron (NM_022783, intron 8 of 8) -85570 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 327.667-5 chr2 57520980 57521488 + 1 NA Intergenic L1MA3|LINE|L1 -386417 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 211.833-14 chr21 29977901 29978342 + 1 NA Intergenic Tigger19a|DNA|TcMar-Tigger -38069 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 240.5-2 chr12 121160321 121160688 + 1 NA intron (NR_033956, intron 3 of 10) L1MB7|LINE|L1 27628 NR_033955 5027 Hs.439682 NM_002562 ENSG00000089041 P2RX7 P2X7 purinergic receptor P2X 7 protein-coding 279.333-6 chr2 209716271 209716576 + 1 NA intron (NM_001363910, intron 13 of 15) intron (NM_001363910, intron 13 of 15) -55409 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 224.333-28 chr6 63308901 63309389 + 1 NA intron (NM_001143940, intron 1 of 4) intron (NM_001143940, intron 1 of 4) 10832 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 129.167-19 chr12 66385793 66386076 + 1 NA intron (NM_001366722, intron 19 of 24) Charlie8|DNA|hAT-Charlie 83389 NR_135080 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 175.333-26 chr2 82233313 82233619 + 1 NA Intergenic L1MC4|LINE|L1 -623337 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 155.5-26 chr18 63717442 63717725 + 1 NA intron (NM_001370475, intron 5 of 7) L1ME3A|LINE|L1 14623 NM_001370475 89778 Hs.350958 NM_080475 ENSG00000206072 SERPINB11 EPIPIN|SERPIN11 serpin family B member 11 (gene/pseudogene) protein-coding 198.833-24 chr5 90734463 90734701 + 1 NA intron (NR_003149, intron 50 of 89) AluSg4|SINE|Alu 175785 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 191.833-28 chr5 141148622 141148833 + 1 NA Intergenic Intergenic -1295 NM_018939 56130 Hs.283085 NM_018939 ENSG00000113211 PCDHB6 PCDH-BETA6 protocadherin beta 6 protein-coding 154.5-62 chr6 35868420 35868624 + 1 NA intron (NM_003137, intron 12 of 15) intron (NM_003137, intron 12 of 15) 52576 NM_003137 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 152.333-29 chr19 33972202 33972478 + 1 NA Intergenic L1MEc|LINE|L1 175470 NM_001129994 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 196.833-26 chr9 83578254 83578653 + 1 NA Intergenic L1MA7|LINE|L1 -40052 NM_001244959 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 167.167-25 chr14 29079848 29080220 + 1 NA Intergenic Intergenic -294247 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 218.5-28 chr5 112702722 112703086 + 1 NA Intergenic Intergenic -4594 NM_001127511 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 142.667-57 chr2 214342011 214342311 + 1 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -68893 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 174.333-79 chr9 90491172 90491459 + 1 NA intron (NR_034157, intron 5 of 5) L2a|LINE|L2 -57826 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 131.5-47 chr3 36916027 36916230 + 1 NA intron (NM_001329998, intron 1 of 23) MER3|DNA|hAT-Charlie 28926 NM_014831 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 164.667-61 chr5 148740965 148741138 + 1 NA Intergenic MER102b|DNA|hAT-Charlie -85542 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 231.667 chr10 12331589 12331997 + 1 NA Intergenic AluSg|SINE|Alu -17754 NM_153498 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 209.667-25 chr21 32170128 32170573 + 1 NA Intergenic L1MB7|LINE|L1 -84055 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 196.833-14 chr20 54515753 54516366 + 1 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 40466 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 145.667-23 chr12 118632057 118632346 + 1 NA Intergenic (TTGTCTT)n|Simple_repeat|Simple_repeat 129478 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 233.667-11 chr14 89246287 89246630 + 1 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 170775 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 246.333-9 chr14 57734188 57734540 + 1 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 130635 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 136.5-63 chr3 104277791 104278131 + 1 NA Intergenic HUERS-P3b-int|LTR|ERV1 -753845 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 243.333-9 chr15 47216783 47217112 + 1 NA intron (NM_001198999, intron 1 of 19) MLT1A0|LTR|ERVL-MaLR 32858 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 166.833-7 chr10 82963024 82963296 + 1 NA intron (NR_163253, intron 8 of 10) L2c|LINE|L2 713929 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 172.5-5 chr1 147265457 147265924 + 1 NA intron (NM_001348462, intron 7 of 22) MIRc|SINE|MIR 22548 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 147.833-29 chr18 72388328 72388567 + 1 NA Intergenic Alu|SINE|Alu 155895 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 194.667-30 chr2 114070017 114070502 + 1 NA Intergenic Intergenic -90275 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 132.5-74 chr5 71716658 71716895 + 1 NA Intergenic LTR83|LTR|ERVL -2499 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 175.667-21 chr16 5631522 5631767 + 1 NA promoter-TSS (NR_107032) promoter-TSS (NR_107032) -823 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 183.833-34 chr5 49666287 49666559 + 1 NA Intergenic (CATTC)n|Satellite|Satellite 774865 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 191.667-50 chr6 50718533 50718844 + 1 NA intron (NM_172238, intron 2 of 7) intron (NM_172238, intron 2 of 7) 5144 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 371.833 chr13 38309727 38310607 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -39684 NM_001286705 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20|HLD14 ubiquitin fold modifier 1 protein-coding 293.667-8 chr3 182019636 182019929 + 1 NA Intergenic Intergenic 67418 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 162.333-6 chr10 15771718 15771934 + 1 NA Intergenic L1ME3|LINE|L1 -51491 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 250.833-6 chr2 28502522 28502798 + 1 NA intron (NM_001170585, intron 1 of 56) L1MEd|LINE|L1 6589 NM_001170585 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 246.5-5 chr1 214093723 214094105 + 1 NA Intergenic L1PA15|LINE|L1 105381 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 236.333-12 chr17 7004751 7005196 + 1 NA intron (NM_000697, intron 8 of 13) MIR|SINE|MIR 7361 NR_040089 100506713 Hs.422967 NR_040089 ENSG00000215067 ALOX12-AS1 - ALOX12 antisense RNA 1 ncRNA 138.833-36 chr2 125494956 125495198 + 1 NA Intergenic Intergenic 622908 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 187.333-12 chr10 107579141 107579466 + 1 NA Intergenic L1MD3|LINE|L1 -414597 NM_001206569 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 162.333-44 chr21 14304185 14304493 + 1 NA Intergenic Intergenic 30540 NR_003088 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 242.333-3 chr10 89756315 89756706 + 1 NA intron (NM_016195, intron 26 of 32) intron (NM_016195, intron 26 of 32) 54920 NM_001284259 9585 Hs.240 NM_016195 ENSG00000138182 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 192.5-34 chr3 141491790 141492076 + 1 NA intron (NM_006506, intron 1 of 23) intron (NM_006506, intron 1 of 23) 4906 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 156.833-3 chr1 186178674 186179200 + 1 NA intron (NM_031935, intron 104 of 106) intron (NM_031935, intron 104 of 106) -117336 NM_001127708 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 190.5-37 chr22 48472570 48473006 + 1 NA Intergenic Intergenic -16765 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 235.333-23 chr6 135617260 135617676 + 1 NA intron (NR_152845, intron 2 of 4) LTR62|LTR|ERVL 119667 NR_152844 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 292.833-11 chr9 15010172 15010577 + 1 NA intron (NR_003920, intron 3 of 4) L1MC5|LINE|L1 17047 NR_003920 389705 Hs.431257 NR_003920 LOC389705 - histone PARylation factor 1 pseudogene pseudo 162.167-55 chr9 71037513 71037903 + 1 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 83913 NM_001366153 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 161.333-5 chr10 43854398 43854715 + 1 NA Intergenic Intergenic -4855 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 283.667-3 chr10 52260300 52260929 + 1 NA intron (NM_001098512, intron 10 of 17) intron (NM_001098512, intron 10 of 17) 53514 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 162.333-2 chr1 109978449 109978767 + 1 NA Intergenic Intergenic -6157 NM_001242673 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 227.667 chr1 51141600 51141969 + 1 NA intron (NM_001136508, intron 3 of 4) L1MC4|LINE|L1 39556 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 122.333-21 chr11 108502434 108502639 + 1 NA Intergenic Intergenic -4152 NM_001363502 143888 Hs.83286 NM_153705 ENSG00000178202 POGLUT3 KDELC2 protein O-glucosyltransferase 3 protein-coding 132.333-99 chr8 29461784 29462078 + 1 NA Intergenic Intergenic -111247 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 142.5-39 chr2 81460593 81460876 + 1 NA TTS (NR_110161) TTS (NR_110161) 6212 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 158.667-22 chr12 69531803 69532075 + 1 NA intron (NM_001278354, intron 3 of 9) intron (NM_001278354, intron 3 of 9) 16499 NR_145803 109623461 NR_145803 SNORA113 - small nucleolar RNA, H/ACA box 113 snoRNA 155.333-30 chr14 82180682 82180901 + 1 NA Intergenic Intergenic -437653 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 321.667-2 chr13 92484322 92485009 + 1 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -5498 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 226.667-31 chr7 22210096 22210364 + 1 NA intron (NM_012294, intron 9 of 25) intron (NM_012294, intron 9 of 25) -15420 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 275.667-27 chr8 131779665 131780173 + 1 NA Intergenic L1PB4|LINE|L1 -124174 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 292.333 chr1 153999777 154000209 + 1 NA intron (NM_001159484, intron 35 of 37) AluJo|SINE|Alu 9231 NM_001030 6232 Hs.546291 NM_001030 ENSG00000177954 RPS27 DBA17|MPS-1|MPS1|S27 ribosomal protein S27 protein-coding 137.333-20 chr12 90285220 90285373 + 1 NA Intergenic Intergenic -8022 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 243.333-11 chr18 5713050 5713462 + 1 NA Intergenic Intergenic -35563 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 221.5-16 chr18 40154206 40154435 + 1 NA Intergenic L1ME2|LINE|L1 88034 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 171.333-57 chr5 56854647 56854952 + 1 NA intron (NM_005921, intron 1 of 19) intron (NM_005921, intron 1 of 19) 39250 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 163.333-87 chr9 97826595 97826835 + 1 NA intron (NR_147055, intron 1 of 10) L1MC2|LINE|L1 26365 NR_147055 101928337 NR_147055 ENSG00000236130 PTCSC2 - papillary thyroid carcinoma susceptibility candidate 2 ncRNA 197.5-39 chr3 151823565 151823863 + 1 NA intron (NM_001086, intron 3 of 4) L1ME3A|LINE|L1 9598 NM_001086 13 Hs.506908 NM_001086 ENSG00000114771 AADAC CES5A1|DAC arylacetamide deacetylase protein-coding 186.167-32 chr4 87779147 87779451 + 1 NA Intergenic Intergenic -20255 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 151.167-50 chr7 33080886 33081175 + 1 NA Intergenic LTR49|LTR|ERV1 -18233 NM_001002009 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 289.667-10 chr7 43525119 43525460 + 1 NA intron (NM_001287059, intron 22 of 27) intron (NM_001287059, intron 22 of 27) -2747 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 190.333-53 chr7 125121323 125121589 + 1 NA intron (NR_125718, intron 6 of 10) intron (NR_125718, intron 6 of 10) -63113 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 144.5-59 chr3 100165346 100165569 + 1 NA intron (NM_001167924, intron 4 of 9) L1ME5|LINE|L1 -20367 NR_028358 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 184.5-57 chrX 66370122 66370413 + 1 NA Intergenic L1MB8|LINE|L1 202517 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 392.5 chr3 88461993 88462597 + 1 NA intron (NM_001368168, intron 2 of 2) L1ME3A|LINE|L1 123839 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 232.667-31 chr8 109392821 109393324 + 1 NA intron (NM_177531, intron 9 of 77) intron (NM_177531, intron 9 of 77) 30611 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 305.333-4 chr10 72460584 72461029 + 1 NA intron (NM_001195519, intron 3 of 6) intron (NM_001195519, intron 3 of 6) 63180 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 267.833-10 chr21 20539770 20540319 + 1 NA Intergenic AluY|SINE|Alu 263064 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 205.667-8 chr11 91162641 91163013 + 1 NA Intergenic Intergenic -293625 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 232.5-36 chr7 88670017 88670308 + 1 NA Intergenic Intergenic -89538 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 178.5-4 chr1 161721317 161721574 + 1 NA promoter-TSS (NM_001320241) promoter-TSS (NM_001320241) -99 NM_001002901 127943 Hs.517422 NM_001002901 ENSG00000162746 FCRLB FCRL2|FCRLM2|FCRLY|FREB-2|FREB2|FcRY Fc receptor like B protein-coding 213.167-20 chr4 27359107 27359364 + 1 NA Intergenic Intergenic 141756 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 151.333-76 chr5 156395314 156395532 + 1 NA intron (NM_001128209, intron 2 of 7) MER89|LTR|ERV1 68259 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 329.667-9 chr7 105231730 105232180 + 1 NA intron (NM_182692, intron 2 of 15) AluJo|SINE|Alu 37122 NM_182691 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 261.333-31 chr8 137184157 137184618 + 1 NA Intergenic MIRb|SINE|MIR 229201 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 124.667-91 chr5 27392248 27392492 + 1 NA Intergenic Intergenic -79922 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 157.667-42 chr20 52749239 52749524 + 1 NA Intergenic Intergenic 128543 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 215.833-22 chr8 49988518 49988958 + 1 NA intron (NR_135798, intron 1 of 15) L1MB8|LINE|L1 77331 NM_001321776 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 244.667-8 chr14 53641427 53641687 + 1 NA Intergenic HERVL-int|LTR|ERVL 306927 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 261.833-6 chr15 26498579 26499078 + 1 NA Intergenic L1MA2|LINE|L1 130262 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 117.333-32 chr14 59183357 59183500 + 1 NA Intergenic L1ME3A|LINE|L1 -5239 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 210.5-4 chr1 237591444 237591753 + 1 NA intron (NM_001035, intron 31 of 104) MER20|DNA|hAT-Charlie 120479 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 236.333-21 chr5 30568930 30569310 + 1 NA Intergenic L2a|LINE|L2 -624566 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 186.5-29 chr16 4090793 4091058 + 1 NA intron (NM_001116, intron 2 of 10) intron (NM_001116, intron 2 of 10) 25517 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 152.167-44 chr3 172456958 172457129 + 1 NA Intergenic HAL1|LINE|L1 -8587 NM_198407 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 124.667-75 chr3 58794547 58794816 + 1 NA intron (NM_001351532, intron 14 of 14) intron (NM_001351532, intron 14 of 14) -29790 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 148.333-95 chr7 112347988 112348309 + 1 NA Intergenic Intergenic -74996 NM_001197080 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 115.667-124 chr9 98504515 98504665 + 1 NA intron (NM_005458, intron 3 of 18) intron (NM_005458, intron 3 of 18) 204345 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 126.667-89 chr7 40074910 40075083 + 1 NA intron (NM_003718, intron 9 of 13) intron (NM_003718, intron 9 of 13) 59626 NM_138701 136647 Hs.654989 NM_138701 ENSG00000168303 MPLKIP ABHS|C7orf11|ORF20|TTD4 M-phase specific PLK1 interacting protein protein-coding 476.5 chr15 71006781 71007714 + 1 NA intron (NM_017691, intron 11 of 15) intron (NM_017691, intron 11 of 15) 114804 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 190.5-6 chr10 69134041 69134333 + 1 NA intron (NM_001318944, intron 3 of 9) intron (NM_001318944, intron 3 of 9) 10009 NM_001318945 9559 Hs.499925 NM_004896 ENSG00000122958 VPS26A HB58|Hbeta58|PEP8A|VPS26 VPS26, retromer complex component A protein-coding 265.667-22 chr8 116600887 116601323 + 1 NA Intergenic Intergenic -50995 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 170.333-5 chr1 169291668 169291932 + 1 NA intron (NR_104229, intron 6 of 12) Tigger1|DNA|TcMar-Tigger 75997 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 161.667-33 chr16 62255262 62255576 + 1 NA Intergenic Intergenic -218981 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 132.5-34 chr15 67630538 67630709 + 1 NA intron (NM_001206804, intron 8 of 21) MIRc|SINE|MIR 81529 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 136.5-87 chr8 21528743 21528923 + 1 NA Intergenic L1MEc|LINE|L1 230594 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 196.333-31 chr3 196146133 196146394 + 1 NA intron (NR_034088, intron 2 of 2) LTR8B|LTR|ERV1 3627 NR_034088 401109 Hs.280133 NM_001001699 ENSG00000224652 LINC00885 - long intergenic non-protein coding RNA 885 ncRNA 222.333-4 chr1 217763081 217763436 + 1 NA intron (NM_138796, intron 6 of 10) L2c|LINE|L2 21862 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 129.667-20 chr12 26419845 26420030 + 1 NA intron (NM_002223, intron 49 of 56) (ATATAA)n|Simple_repeat|Simple_repeat 224364 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 163.667-60 chr5 8861728 8861919 + 1 NA intron (NR_109932, intron 1 of 2) intron (NR_109932, intron 1 of 2) 22091 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 121.5-107 chr8 129458195 129458319 + 1 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 25885 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 214.667-4 chr10 20624512 20624864 + 1 NA Intergenic LTR85a|LTR|Gypsy? 72718 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 152.333-60 chr7 48058372 48058536 + 1 NA intron (NM_001100159, intron 8 of 8) L1MA7|LINE|L1 22911 NM_001267866 136288 Hs.258357 NM_001100159 ENSG00000164746 C7orf57 - chromosome 7 open reading frame 57 protein-coding 126.667-104 chr8 110753125 110753300 + 1 NA Intergenic Intergenic 274221 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 179.333-37 chr3 22666611 22666871 + 1 NA Intergenic Intergenic 535837 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 119.333-109 chr8 69757958 69758095 + 1 NA intron (NM_001146009, intron 2 of 7) MIRb|SINE|MIR 75143 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 156.833-20 chr15 65708508 65708903 + 1 NA intron (NM_005848, intron 14 of 31) intron (NM_005848, intron 14 of 31) 10627 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 299.167-5 chr22 37891543 37891887 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR -14582 NM_033386 85377 Hs.517610 NM_033386 ENSG00000100139 MICALL1 MICAL-L1|MIRAB13 MICAL like 1 protein-coding 175.333-12 chr13 80699063 80699337 + 1 NA Intergenic Intergenic -319191 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 196.167-30 chr5 168162839 168163205 + 1 NA intron (NM_001368145, intron 12 of 26) intron (NM_001368145, intron 12 of 26) -2823 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 167.667-91 chr8 140768277 140768651 + 1 NA intron (NM_001352718, intron 14 of 32) MIR3|SINE|MIR -35811 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 138.333-69 chr20 516694 516939 + 1 NA intron (NM_001362771, intron 1 of 13) intron (NM_001362771, intron 1 of 13) 26974 NM_001895 1457 Hs.644056 NM_001895 ENSG00000101266 CSNK2A1 CK2A1|CKII|Cka1|Cka2|OCNDS casein kinase 2 alpha 1 protein-coding 184.5-19 chr16 58550748 58550976 + 1 NA intron (NM_206999, intron 24 of 30) intron (NM_206999, intron 24 of 30) -2229 NR_002978 677827 Hs.688592 NR_002978 ENSG00000207493 SNORA46 ACA46 small nucleolar RNA, H/ACA box 46 snoRNA 254.667-9 chr16 66756196 66756591 + 1 NA intron (NM_001136505, intron 18 of 18) L2a|LINE|L2 -4565 NR_136658 1783 Hs.369068 NM_006141 ENSG00000135720 DYNC1LI2 DNCLI2|LIC2 dynein cytoplasmic 1 light intermediate chain 2 protein-coding 154.167-12 chr11 94270918 94271092 + 1 NA Intergenic L1PB1|LINE|L1 -34632 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 217.5-40 chr5 100414557 100414824 + 1 NA Intergenic Intergenic -26436 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 130.333-51 chr2 121011463 121011856 + 1 NA Intergenic L1MB5|LINE|L1 219378 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 153.667-50 chr3 96539482 96539723 + 1 NA Intergenic Intergenic 179638 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 158.5-68 chr5 164202238 164202465 + 1 NA Intergenic Intergenic 265051 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 144.333-90 chr8 126959449 126959710 + 1 NA Intergenic Intergenic -53575 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 117.333-20 chr13 47562535 47562743 + 1 NA Intergenic Intergenic 369983 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 256.667 chr1 25806891 25807167 + 1 NA intron (NM_020451, intron 4 of 12) AluY|SINE|Alu 6836 NM_020451 57190 Hs.323396 NM_020451 ENSG00000162430 SELENON CFTD|MDRS1|RSMD1|RSS|SELN|SEPN1 selenoprotein N protein-coding 215.5-29 chr4 36530542 36530823 + 1 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) -104254 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 255.333-30 chr9 25410756 25411208 + 1 NA Intergenic Intergenic 267876 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 251.667-9 chr21 32170838 32171266 + 1 NA Intergenic L1MB7|LINE|L1 -84757 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 287.667-6 chr2 52418445 52418793 + 1 NA Intergenic Intergenic 47971 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 157.5-3 chr1 205066787 205066971 + 1 NA intron (NM_001346083, intron 15 of 22) intron (NM_001346083, intron 15 of 22) 17581 NM_203376 388730 Hs.146928 NM_203376 ENSG00000174529 TMEM81 HC3107|KVLA2788|UNQ2788 transmembrane protein 81 protein-coding 216.5-16 chr2 191294389 191294729 + 1 NA intron (NM_012223, intron 2 of 28) intron (NM_012223, intron 2 of 28) 49155 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 162.333-30 chr2 33465396 33465821 + 1 NA intron (NM_001349979, intron 1 of 17) Tigger1|DNA|TcMar-Tigger 7553 NM_001349979 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 250.833-10 chr7 11535196 11535646 + 1 NA intron (NM_015204, intron 6 of 26) intron (NM_015204, intron 6 of 26) 296777 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 195.333-4 chr10 57538441 57538785 + 1 NA Intergenic Intergenic -234054 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 323.5 chr15 25373259 25373641 + 1 NA intron (NM_001354542, intron 4 of 11) intron (NM_001354542, intron 4 of 11) 64779 NM_001354505 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 218.333-24 chr21 24844364 24844648 + 1 NA intron (NR_046198, intron 1 of 3) MIR|SINE|MIR 3956 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 184.333-44 chr4 30542461 30542942 + 1 NA Intergenic Intergenic -177668 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 211.667-35 chr6 101922397 101922760 + 1 NA intron (NM_001166247, intron 11 of 16) intron (NM_001166247, intron 11 of 16) 523593 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 199.167-18 chr2 40508635 40509055 + 1 NA intron (NM_001112802, intron 1 of 7) MER5B|DNA|hAT-Charlie 3590 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 200.5-25 chr21 29401596 29402028 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR 29311 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 142.5-64 chr7 5441118 5441346 + 1 NA Intergenic AluJo|SINE|Alu -12305 NM_001354886 100129484 Hs.147507 NM_001354886 LOC100129484 - uncharacterized LOC100129484 protein-coding 131.667-7 chr1 185129302 185129486 + 1 NA intron (NM_030934, intron 10 of 14) intron (NM_030934, intron 10 of 14) 27559 NM_030934 81627 Hs.107149 NM_030934 ENSG00000121486 TRMT1L C1orf25|MST070|MSTP070|TRM1L|bG120K12.3 tRNA methyltransferase 1 like protein-coding 225.833-4 chr11 81475351 81475861 + 1 NA Intergenic Intergenic 415230 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 218.833-21 chr4 37491094 37491511 + 1 NA intron (NM_001104629, intron 1 of 3) HAL1|LINE|L1 37377 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 399.5-3 chr8 125694834 125695363 + 1 NA Intergenic Intergenic 256099 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 183.667-42 chr20 43967760 43968004 + 1 NA intron (NM_032883, intron 2 of 9) L1MA2|LINE|L1 21986 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 249.333-5 chr13 59420577 59420997 + 1 NA Intergenic AluSp|SINE|Alu -591931 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 134.333-20 chr11 20410893 20411208 + 1 NA intron (NM_005788, intron 9 of 15) intron (NM_005788, intron 9 of 15) 23334 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 231.5-9 chr20 39874460 39874791 + 1 NA Intergenic Intergenic -129836 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 180.333-17 chr13 47317860 47318105 + 1 NA Intergenic Intergenic -420906 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 208.667-16 chr14 67045142 67045482 + 1 NA intron (NM_001024218, intron 9 of 21) intron (NM_001024218, intron 9 of 21) -144128 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 146.333-74 chr4 66733682 66733847 + 1 NA Intergenic Intergenic 456940 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 180.5-3 chr1 72959664 72959873 + 1 NA Intergenic Intergenic -346402 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 190.5-35 chr2 231346374 231346700 + 1 NA intron (NM_001352754, intron 21 of 24) AluY|SINE|Alu -16171 NR_039937 100616317 NR_039937 ENSG00000263641 MIR4777 - microRNA 4777 ncRNA 225.667-24 chr4 45825406 45825728 + 1 NA Intergenic Intergenic 298487 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 259.167-14 chr5 20962321 20962706 + 1 NA Intergenic Intergenic -346978 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 197.167-25 chr2 66183181 66183529 + 1 NA Intergenic Intergenic 174973 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 237.5-31 chr8 105719581 105719855 + 1 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 340785 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 313.667-14 chr6 38853409 38854054 + 1 NA intron (NM_001371, intron 40 of 91) MER47A|DNA|TcMar-Tigger 99376 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 252.5-14 chr2 212518966 212519446 + 1 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 19422 NM_001042599 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 193.333-33 chr2 164681884 164682157 + 1 NA 3' UTR (NM_001278461, exon 13 of 13) 3' UTR (NM_001278461, exon 13 of 13) 5757 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 277.5-3 chr14 50655758 50656066 + 1 NA intron (NM_021818, intron 2 of 4) AluSp|SINE|Alu 12394 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 176.833 chr1 21255513 21255690 + 1 NA intron (NM_001113347, intron 6 of 16) intron (NM_001113347, intron 6 of 16) 24014 NM_001113347 1889 Hs.195080 NM_001397 ENSG00000117298 ECE1 ECE endothelin converting enzyme 1 protein-coding 137.5-75 chr4 107511096 107511475 + 1 NA Intergenic Intergenic 208949 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 202.667-3 chr1 53266475 53266802 + 1 NA exon (NM_017522, exon 8 of 16) exon (NM_017522, exon 8 of 16) 28028 NR_038953 100507564 Hs.592502 NR_038953 ENSG00000226754 LOC100507564 - uncharacterized LOC100507564 ncRNA 232.333-11 chr14 58832347 58832848 + 1 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 4309 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 213.333-31 chr3 128064338 128064853 + 1 NA TTS (NM_001319086).2 TTS (NM_001319086).2 -11215 NR_046645 100874089 Hs.581603 NR_046645 ENSG00000239608 RUVBL1-AS1 - RUVBL1 antisense RNA 1 ncRNA 187.667-9 chr11 31093095 31093425 + 1 NA intron (NM_001367979, intron 16 of 38) intron (NM_001367979, intron 16 of 38) -100574 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 185.333-17 chr14 41676926 41677298 + 1 NA intron (NM_001346173, intron 1 of 4) L1M4b|LINE|L1 70256 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 127.667-67 chr4 88104790 88104934 + 1 NA intron (NM_001257386, intron 10 of 15) intron (NM_001257386, intron 10 of 15) 53777 NM_004827 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 360.667-4 chr8 120796864 120797525 + 1 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) 14852 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 494.333 chr20 21175860 21176517 + 1 NA intron (NM_018474, intron 6 of 12) AluSz6|SINE|Alu 42101 NR_109956 101929591 Hs.656066 NR_109956 ENSG00000232712 KIZ-AS1 - KIZ antisense RNA 1 ncRNA 130.667-84 chr6 136843078 136843338 + 1 NA intron (NM_000288, intron 3 of 9) MIR|SINE|MIR 20616 NM_000288 5191 Hs.280932 NM_000288 ENSG00000112357 PEX7 PBD9B|PTS2R|RCDP1|RD peroxisomal biogenesis factor 7 protein-coding 127.833-54 chr4 38879725 38879941 + 1 NA intron (NM_001350635, intron 2 of 8) MER5B|DNA|hAT-Charlie 11801 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 133.833-49 chr3 122770057 122770359 + 1 NA intron (NM_001320728, intron 2 of 6) intron (NM_001320728, intron 2 of 6) 23623 NM_001320728 79663 Hs.29169 NM_024610 ENSG00000169087 HSPBAP1 PASS1 HSPB1 associated protein 1 protein-coding 124.167-90 chr8 121079374 121079557 + 1 NA Intergenic Intergenic -267419 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 154.333-22 chr14 61015607 61015797 + 1 NA intron (NR_033344, intron 3 of 16) intron (NR_033344, intron 3 of 16) -34012 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 137.333-73 chr5 27610616 27610874 + 1 NA Intergenic MIR|SINE|MIR 138453 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 246.333 chr1 204516168 204516588 + 1 NA promoter-TSS (NM_001278519) promoter-TSS (NM_001278519) -1 NM_001278516 4194 Hs.497492 NM_002393 ENSG00000198625 MDM4 HDMX|MDMX|MRP1 MDM4 regulator of p53 protein-coding 232.333-27 chr5 101340808 101341195 + 1 NA Intergenic L1MB1|LINE|L1 -437719 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 317.5-4 chr14 65515028 65515476 + 1 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 44150 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 197.333-29 chr20 19295054 19295348 + 1 NA intron (NM_020689, intron 2 of 16) L1PA10|LINE|L1 -10605 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 135.833-24 chr17 54246782 54247136 + 1 NA Intergenic Intergenic 424032 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 195.5-9 chr11 12258953 12259317 + 1 NA intron (NR_144420, intron 25 of 27) L1ME4a|LINE|L1 -27765 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 173.333-5 chr1 94874458 94874733 + 1 NA intron (NM_001258340, intron 12 of 14) intron (NM_001258340, intron 12 of 14) 50102 NM_001350223 126969 Hs.483423 NM_152369 ENSG00000143036 SLC44A3 CTL3 solute carrier family 44 member 3 protein-coding 181.5-9 chr11 31142435 31142745 + 1 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) -149904 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 279.5-2 chr2 33013046 33013658 + 1 NA intron (NM_206943, intron 2 of 33) intron (NM_206943, intron 2 of 33) 66399 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 152.667-92 chr9 129114619 129114920 + 1 NA intron (NM_001193397, intron 1 of 9) intron (NM_001193397, intron 1 of 9) 3081 NM_001193397 5524 Hs.400740 NM_021131 ENSG00000119383 PTPA PP2A|PPP2R4|PR53 protein phosphatase 2 phosphatase activator protein-coding 200.5-43 chr8 82643319 82643565 + 1 NA Intergenic L1MEc|LINE|L1 -268662 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 225.167-29 chr8 98890802 98891072 + 1 NA intron (NM_001256312, intron 1 of 12) intron (NM_001256312, intron 1 of 12) 51673 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 215.833-10 chr19 52265856 52266396 + 1 NA Intergenic AluSx|SINE|Alu -3461 NM_001010851 90321 Hs.439662 NM_001010851 ENSG00000196214 ZNF766 - zinc finger protein 766 protein-coding 260.5-15 chr3 141014773 141015266 + 1 NA Intergenic L1MC5a|LINE|L1 -36328 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 217.667-53 chr9 14645383 14645660 + 1 NA intron (NR_148717, intron 8 of 11) L1ME3B|LINE|L1 47911 NR_148718 340481 Hs.649522 NM_178566 ENSG00000175893 ZDHHC21 DHHC-21|DHHC21|DNZ1|HSPC097 zinc finger DHHC-type containing 21 protein-coding 201.833-11 chr18 2424707 2424933 + 1 NA Intergenic Intergenic 146685 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 280.667-2 chr1 223260714 223261184 + 1 NA intron (NM_001037175, intron 5 of 5) intron (NM_001037175, intron 5 of 5) 103227 NM_001037175 55061 Hs.497841 NM_017982 ENSG00000143502 SUSD4 PRO222 sushi domain containing 4 protein-coding 297.167-2 chr12 88722558 88723013 + 1 NA Intergenic L2a|LINE|L2 -142312 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 120.5-15 chr10 108824869 108825054 + 1 NA Intergenic Intergenic -755668 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 175.333-41 chr3 125424189 125424393 + 1 NA Intergenic MER57A-int|LTR|ERV1 -48937 NM_001348425 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 179.667-23 chr2 31222061 31222300 + 1 NA intron (NM_001321270, intron 2 of 21) intron (NM_001321270, intron 2 of 21) -4665 NM_001145122 440854 Hs.468059 NM_001145122 ENSG00000214711 CAPN14 - calpain 14 protein-coding 189.333-49 chr7 108782911 108783142 + 1 NA Intergenic Intergenic 101561 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 217.5-37 chr5 24957503 24957927 + 1 NA Intergenic Intergenic -117132 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 146.667-41 chr16 72236580 72236775 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity -64227 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 204.5-5 chr10 78991452 78991815 + 1 NA intron (NR_015429, intron 3 of 7) L1ME1|LINE|L1 75815 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 158.333-54 chr4 14887679 14887981 + 1 NA intron (NR_126435, intron 1 of 6) MER45A|DNA|hAT-Tip100 339 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 126.333-53 chr19 57453419 57453797 + 1 NA Intergenic L1ME1|LINE|L1 3131 NM_020633 57191 Hs.677423 NM_020633 ENSG00000178201 VN1R1 V1RL1|VNR19I1|ZVNH1|ZVNR1 vomeronasal 1 receptor 1 protein-coding 133.667-53 chr2 149972849 149973044 + 1 NA Intergenic L1ME4a|LINE|L1 -113755 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 153.167-58 chr8 73510461 73510862 + 1 NA intron (NM_001164383, intron 8 of 9) THE1C|LTR|ERVL-MaLR 90587 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 131.5-10 chr11 29759147 29759626 + 1 NA Intergenic Intergenic 140584 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 125.5-30 chr17 34416779 34416951 + 1 NA Intergenic MamRep1527|LTR|LTR -53632 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 276.167-4 chr2 72424005 72424422 + 1 NA intron (NM_001321729, intron 18 of 22) L1M5|LINE|L1 -276351 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 240.5-10 chr3 40627210 40627818 + 1 NA Intergenic Intergenic 102554 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 174.5-38 chr5 90791926 90792375 + 1 NA intron (NR_003149, intron 70 of 89) intron (NR_003149, intron 70 of 89) 233353 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 181.333-33 chr2 192931257 192931618 + 1 NA Intergenic L2b|LINE|L2 181592 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 232.667-22 chr4 36849182 36849651 + 1 NA Intergenic MIR|SINE|MIR -152363 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 143.667-87 chr5 44394698 44394944 + 1 NA intron (NR_108034, intron 1 of 2) intron (NR_108034, intron 1 of 2) -5401 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 291.667-16 chr3 60616856 60617517 + 1 NA TTS (NR_128708) TTS (NR_128708) 684 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 198.667-57 chr9 106633440 106633757 + 1 NA intron (NR_104145, intron 1 of 6) L3|LINE|CR1 17540 NR_104145 100996590 Hs.147110 NR_104145 ENSG00000234323 LINC01505 - long intergenic non-protein coding RNA 1505 ncRNA 199.5-45 chr8 27815276 27815681 + 1 NA intron (NM_001278945, intron 6 of 7) intron (NM_001278945, intron 6 of 7) 22339 NM_018492 55872 Hs.104741 NM_018492 ENSG00000168078 PBK CT84|HEL164|Nori-3|SPK|TOPK PDZ binding kinase protein-coding 257.5-6 chr10 22348251 22348686 + 1 NA intron (NM_001253854, intron 3 of 13) intron (NM_001253854, intron 3 of 13) 2972 NM_012443 9576 Hs.655170 NM_012443 ENSG00000077327 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 302.333-6 chr22 25849372 25849853 + 1 NA intron (NM_001318245, intron 20 of 43) intron (NM_001318245, intron 20 of 43) 107424 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 194.333-37 chr7 28812302 28813018 + 1 NA intron (NM_001011666, intron 5 of 6) intron (NM_001011666, intron 5 of 6) 126527 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 140.5-4 chr1 112435737 112435927 + 1 NA intron (NM_018704, intron 3 of 5) intron (NM_018704, intron 3 of 5) 26001 NR_036210 100422976 NR_036210 ENSG00000283296 MIR4256 - microRNA 4256 ncRNA 155.333-5 chr1 157053956 157054257 + 1 NA Intergenic L1ME1|LINE|L1 -8364 NM_198236 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding 196.667-33 chr21 27028127 27028352 + 1 NA Intergenic MER8|DNA|TcMar-Tigger -61151 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 205.667-35 chr2 125348127 125348472 + 1 NA Intergenic Intergenic 769686 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 175.667-15 chr12 107177854 107178077 + 1 NA Intergenic MLT2B4|LTR|ERVL -84416 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 DSPD|PHLL1 cryptochrome circadian regulator 1 protein-coding 260.333-6 chr15 52052159 52052549 + 1 NA intron (NM_002748, intron 3 of 5) MLT1F|LTR|ERVL-MaLR 33135 NM_002748 5597 Hs.411847 NM_002748 ENSG00000069956 MAPK6 ERK3|HsT17250|PRKM6|p97MAPK mitogen-activated protein kinase 6 protein-coding 270.667-11 chr2 200373108 200373479 + 1 NA intron (NM_001282743, intron 2 of 11) (A)n|Simple_repeat|Simple_repeat 64343 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 132.5-78 chr5 136653504 136653721 + 1 NA Intergenic L1ME4a|LINE|L1 -288136 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 198.333-35 chr5 85667509 85667791 + 1 NA Intergenic Tigger2|DNA|TcMar-Tigger -614794 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 228.5-25 chr4 95879010 95879290 + 1 NA Intergenic Intergenic 39057 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 302.5-12 chr7 71187021 71187412 + 1 NA intron (NM_022479, intron 1 of 10) AluJr|SINE|Alu 55072 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 174.5-13 chr14 92057566 92057881 + 1 NA TTS (NM_030660) TTS (NM_030660) -17664 NM_004239 9321 Hs.632339 NM_004239 ENSG00000100815 TRIP11 ACG1A|CEV14|GMAP-210|GMAP210|ODCD|TRIP-11|TRIP230 thyroid hormone receptor interactor 11 protein-coding 148.167-9 chr10 86742644 86743094 + 1 NA Intergenic MIRb|SINE|MIR -13770 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 217.333-36 chr7 10565512 10565789 + 1 NA intron (NR_147499, intron 1 of 2) L1M4b|LINE|L1 -137026 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 150.333-80 chr5 11633807 11633972 + 1 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -44823 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 186.5-63 chr7 14125304 14125541 + 1 NA Intergenic Intergenic -133997 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 228.167-23 chr7 43577848 43578261 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -5054 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 134.5-20 chr11 94690763 94691224 + 1 NA intron (NR_135094, intron 1 of 3) L1MA7|LINE|L1 49362 NR_135093 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 187.5-21 chr2 62965588 62965894 + 1 NA intron (NM_001354215, intron 15 of 24) intron (NM_001354215, intron 15 of 24) 81970 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 204.667-25 chr15 70520860 70521139 + 1 NA Intergenic Intergenic -15071 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 318.5-6 chr2 68657086 68657660 + 1 NA Intergenic Intergenic 13785 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 199.833-4 chr10 120082483 120082824 + 1 NA Intergenic L1MB8|LINE|L1 124140 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 185.667-62 chrX 56218892 56219171 + 1 NA intron (NM_001324104, intron 2 of 6) MamRep4096|DNA|hAT-Tip100 -13325 NM_001324102 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 175.667-35 chr2 224713250 224713601 + 1 NA Intergenic MIRb|SINE|MIR -128028 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 156.333-52 chr20 15396425 15396717 + 1 NA intron (NM_001351663, intron 6 of 17) MIR3|SINE|MIR 199731 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 186.667-4 chr10 24995394 24995771 + 1 NA intron (NR_072993, intron 1 of 2) intron (NR_072993, intron 1 of 2) 20576 NM_145010 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 189.333-47 chr7 35745378 35745658 + 1 NA Intergenic Intergenic 29081 NR_108082 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 333.667-3 chr5 27684443 27685007 + 1 NA Intergenic L1ME3Cz|LINE|L1 212433 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 118.667-54 chr2 8000597 8000778 + 1 NA Intergenic Intergenic -23873 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 232.667-13 chr17 66983135 66983430 + 1 NA intron (NM_014405, intron 1 of 3) intron (NM_014405, intron 1 of 3) 18575 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 136.667-7 chr1 178728114 178728421 + 1 NA intron (NM_152663, intron 1 of 19) intron (NM_152663, intron 1 of 19) 3023 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 272.667 chr10 7889493 7889856 + 1 NA intron (NM_031923, intron 2 of 6) L2c|LINE|L2 71169 NM_031923 83860 Hs.527688 NM_031923 ENSG00000165632 TAF3 TAF140|TAFII-140|TAFII140 TATA-box binding protein associated factor 3 protein-coding 223.333-3 chr10 60949925 60950205 + 1 NA intron (NM_001350906, intron 2 of 12) intron (NM_001350906, intron 2 of 12) -5339 NM_001350905 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 172.667-8 chr1 218362821 218363080 + 1 NA intron (NR_138148, intron 1 of 6) intron (NR_138148, intron 1 of 6) -17272 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 TGFB2-AS1 - TGFB2 antisense RNA 1 (head to head) ncRNA 210.667-9 chr11 108898184 108898409 + 1 NA intron (NM_004398, intron 16 of 17) LTR49-int|LTR|ERV1 233227 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 267.667-13 chr20 57486820 57487226 + 1 NA Intergenic L1PB2|LINE|L1 37844 NR_072975 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 229.667-32 chr8 100423442 100423826 + 1 NA Intergenic Intergenic 40871 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 198.333-19 chr19 3501547 3501785 + 1 NA promoter-TSS (NM_031304) promoter-TSS (NM_031304) -992 NM_001145165 83475 Hs.515064 NM_031304 ENSG00000129932 DOHH HLRC1|hDOHH deoxyhypusine hydroxylase protein-coding 334.333-3 chr2 41312496 41313017 + 1 NA Intergenic Intergenic -564799 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 270.333-8 chr8 101354231 101354721 + 1 NA Intergenic Intergenic -14417 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 136.667-64 chr3 105101168 105101385 + 1 NA Intergenic Intergenic -265437 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 157.833-68 chr8 78259098 78259478 + 1 NA Intergenic Intergenic -257052 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 157.333-56 chr5 25556481 25556832 + 1 NA Intergenic AluSz|SINE|Alu 365703 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 166.333-3 chr1 172147473 172147960 + 1 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -2881 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 329.667-3 chr2 76489592 76490185 + 1 NA Intergenic L2a|LINE|L2 -496077 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 135.5-64 chr5 161463881 161464070 + 1 NA intron (NM_000813, intron 4 of 9) L1ME1|LINE|L1 84149 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 163.5-7 chr10 24028727 24028971 + 1 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -179942 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 242.333-14 chr3 42395226 42395706 + 1 NA Intergenic L1ME4a|LINE|L1 15144 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 210.333-38 chr7 6245827 6246154 + 1 NA intron (NM_001367581, intron 1 of 13) intron (NM_001367581, intron 1 of 13) 26634 NM_001367581 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 206.167-24 chr7 62760895 62761125 + 1 NA Intergenic ALR/Alpha|Satellite|centr 543046 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 199.667-47 chr4 160617728 160617982 + 1 NA Intergenic Intergenic -840071 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 176.667-12 chr10 37573007 37573270 + 1 NA Intergenic L1MEg1|LINE|L1 29793 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 180.667-45 chr22 26325473 26325690 + 1 NA intron (NM_001184776, intron 9 of 14) intron (NM_001184776, intron 9 of 14) -103679 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 134.167-84 chr8 139184002 139184226 + 1 NA Intergenic L1MA5A|LINE|L1 -270073 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 127.667-19 chr11 106017466 106017629 + 1 NA intron (NM_001318750, intron 1 of 2) A-rich|Low_complexity|Low_complexity 4693 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 170.167-56 chr9 123152630 123152832 + 1 NA intron (NR_033234, intron 11 of 18) L1MD2|LINE|L1 -37254 NR_026677 81571 Hs.708072 NM_030814 ENSG00000236901 MIR600HG C9orf45|GL012|NCRNA00287 MIR600 host gene ncRNA 217.167 chr10 13410612 13411080 + 1 NA Intergenic Intergenic -62548 NM_001195602 22929 Hs.124027 NM_012247 ENSG00000086475 SEPHS1 SELD|SPS|SPS1 selenophosphate synthetase 1 protein-coding 118.667-111 chr8 80524177 80524365 + 1 NA 3' UTR (NM_023929, exon 7 of 7) 3' UTR (NM_023929, exon 7 of 7) 38045 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 156.333-20 chr12 8501009 8501210 + 1 NA Intergenic Intergenic -12394 NM_080387 338339 Hs.351811 NM_080387 ENSG00000166527 CLEC4D CD368|CLEC-6|CLEC6|CLECSF8|Dectin-3|MCL|MPCL C-type lectin domain family 4 member D protein-coding 193.333-22 chr17 836778 837095 + 1 NA intron (NM_022463, intron 1 of 7) AluJb|SINE|Alu 27175 NM_001205319 64359 Hs.527989 NM_022463 ENSG00000167693 NXN NRX|TRG-4 nucleoredoxin protein-coding 225.5-2 chr1 189588576 189588926 + 1 NA Intergenic L1MA10|LINE|L1 887259 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 307.667-7 chr19 28535987 28536413 + 1 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) -70488 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 282.5-10 chr8 66748664 66749093 + 1 NA intron (NM_001033578, intron 1 of 16) intron (NM_001033578, intron 1 of 16) 19156 NR_002734 26255 Hs.647156 NR_002734 ENSG00000213005 PTTG3P PTTG3|rcPTTG1 pituitary tumor-transforming 3, pseudogene pseudo 192.333-12 chr15 70143657 70144184 + 1 NA Intergenic Intergenic -46003 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 262.333 chr1 15676374 15676784 + 1 NA Intergenic Intergenic -7741 NM_015164 23207 Hs.646775 NM_015164 ENSG00000116786 PLEKHM2 SKIP pleckstrin homology and RUN domain containing M2 protein-coding 193.833-2 chr1 104668162 104668376 + 1 NA Intergenic Intergenic 595246 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 296.667-5 chr12 83609723 83610106 + 1 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 922759 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 146.333-46 chr2 32012774 32013096 + 1 NA intron (NM_001321210, intron 5 of 5) intron (NM_001321210, intron 5 of 5) -1927 NR_126034 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 154.667-70 chr8 90911075 90911284 + 1 NA intron (NM_022351, intron 5 of 12) intron (NM_022351, intron 5 of 12) 73898 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 365.5-4 chr3 52283987 52284427 + 1 NA Intergenic Intergenic -3613 NM_001144951 132158 Hs.415312 NM_145262 ENSG00000168237 GLYCTK HBEBP2|HBEBP4|HBeAgBP4A glycerate kinase protein-coding 232.5-5 chr13 79226457 79226839 + 1 NA Intergenic Intergenic 179573 NM_001286631 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 214.167-12 chr2 40342202 40342556 + 1 NA intron (NM_001351483, intron 2 of 8) LTR37B|LTR|ERV1 87925 NM_021097 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 231.167 chr1 4253868 4254301 + 1 NA Intergenic Intergenic -157967 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 186.333-12 chr11 38625902 38626318 + 1 NA intron (NR_120554, intron 3 of 4) intron (NR_120554, intron 3 of 4) 20246 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 241.5-23 chr5 132992396 132992799 + 1 NA Intergenic Intergenic -28963 NM_014423 27125 Hs.519313 NM_014423 ENSG00000072364 AFF4 AF5Q31|CHOPS|MCEF AF4/FMR2 family member 4 protein-coding 133.333-26 chr11 103159419 103159712 + 1 NA intron (NM_001377, intron 28 of 88) L2c|LINE|L2 50139 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 129.5-26 chr15 62387568 62387835 + 1 NA Intergenic Intergenic 44672 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 246.667-17 chr4 84251916 84252326 + 1 NA intron (NR_125909, intron 4 of 8) intron (NR_125909, intron 4 of 8) 47048 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 194.667-35 chr20 22554936 22555463 + 1 NA Intergenic AluJo|SINE|Alu 23443 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|FALCOR|HCCDR1|NCRNA00261|TCONS_00027846|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 129.667-105 chr8 106399254 106399435 + 1 NA intron (NM_018002, intron 2 of 15) intron (NM_018002, intron 2 of 15) -48580 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 139.5-43 chr3 178335892 178336098 + 1 NA Intergenic L1MEg|LINE|L1 -83206 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 223.5-16 chr3 2930123 2930548 + 1 NA intron (NM_175607, intron 13 of 24) intron (NM_175607, intron 13 of 24) 38120 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 126.333-107 chr8 84197195 84197352 + 1 NA intron (NM_001354323, intron 1 of 7) intron (NM_001354323, intron 1 of 7) 12607 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 170.333-26 chr14 73639932 73640122 + 1 NA Intergenic Intergenic -4959 NM_031427 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 220.667-6 chr12 5282448 5282733 + 1 NA Intergenic L1M1|LINE|L1 -39439 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 304.667-12 chr3 133563573 133564043 + 1 NA Intergenic Intergenic -9878 NM_017548 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 163.667-20 chr13 106889848 106890234 + 1 NA Intergenic Intergenic 236161 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 139.667-21 chr12 38774015 38774222 + 1 NA intron (NM_153634, intron 7 of 19) intron (NM_153634, intron 7 of 19) 131473 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 134.333-88 chr5 6379155 6379435 + 1 NA promoter-TSS (NM_032286) promoter-TSS (NM_032286) -748 NM_032286 84246 Hs.13885 NM_032286 ENSG00000133398 MED10 L6|NUT2|TRG20 mediator complex subunit 10 protein-coding 149.333-21 chr12 75849549 75849854 + 1 NA Intergenic Intergenic 182075 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 182.333-16 chr14 32364944 32365342 + 1 NA intron (NM_004274, intron 1 of 13) intron (NM_004274, intron 1 of 13) 35845 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 156.333-53 chr20 17354836 17355033 + 1 NA intron (NM_002594, intron 2 of 11) intron (NM_002594, intron 2 of 11) 127894 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 142.333-89 chr6 139467373 139467755 + 1 NA Intergenic L1PB1|LINE|L1 7032 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 117.833-20 chr12 78013629 78013746 + 1 NA intron (NM_001024383, intron 8 of 39) intron (NM_001024383, intron 8 of 39) 182793 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 234.333-33 chr8 50480370 50480709 + 1 NA intron (NR_135797, intron 8 of 20) intron (NR_135797, intron 8 of 20) 316408 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 394.333 chr2 52151988 52152438 + 1 NA intron (NR_135237, intron 7 of 10) L1MB3|LINE|L1 -218435 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 244.833-13 chr4 52842135 52842543 + 1 NA Intergenic Intergenic -19978 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 293.667-9 chr4 37433891 37434248 + 1 NA intron (NM_001144990, intron 5 of 6) intron (NM_001144990, intron 5 of 6) -19856 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 206.667-34 chr4 79114308 79114730 + 1 NA intron (NR_038342, intron 3 of 5) intron (NR_038342, intron 3 of 5) 142771 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 225.5-22 chr17 51661271 51661577 + 1 NA intron (NM_001082533, intron 5 of 9) intron (NM_001082533, intron 5 of 9) 225997 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 177.833-41 chr6 123624921 123625246 + 1 NA intron (NM_001256020, intron 1 of 8) intron (NM_001256020, intron 1 of 8) 11867 NM_001256020 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 170.667-53 chr5 33727946 33728206 + 1 NA intron (NM_001324512, intron 3 of 21) intron (NM_001324512, intron 3 of 21) 163914 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 269.5-16 chr4 34471391 34471692 + 1 NA Intergenic Intergenic -201794 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 223.5-35 chrX 152425389 152425709 + 1 NA intron (NM_000808, intron 1 of 9) L1MC4|LINE|L1 25766 NM_000808 2556 Hs.123024 NM_000808 ENSG00000011677 GABRA3 - gamma-aminobutyric acid type A receptor alpha3 subunit protein-coding 242.5-16 chr5 151300395 151300972 + 1 NA intron (NM_181774, intron 1 of 9) intron (NM_181774, intron 1 of 9) 3083 NM_001145017 285641 Hs.720893 NM_181774 ENSG00000186334 SLC36A3 PAT3|TRAMD2|tramdorin2 solute carrier family 36 member 3 protein-coding 268.167-4 chr12 78841880 78842377 + 1 NA Intergenic L1MB5|LINE|L1 -21854 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 213.167-26 chr6 46493481 46493911 + 1 NA intron (NR_125837, intron 1 of 2) MIR|SINE|MIR -1629 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 146.833-46 chr4 36499798 36499971 + 1 NA intron (NR_149124, intron 3 of 4) L1MA6|LINE|L1 -73456 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 227.167-9 chr15 80688163 80688534 + 1 NA Intergenic L1MC5|LINE|L1 -6962 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 263.5-2 chr1 91646248 91646788 + 1 NA Intergenic HAL1|LINE|L1 145410 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 204.667-20 chr13 63356499 63356765 + 1 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat -28538 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 321.667 chr1 42514025 42514568 + 1 NA intron (NM_001355227, intron 6 of 18) L1MB7|LINE|L1 -18724 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 224.333-29 chr7 3091019 3091368 + 1 NA Intergenic AluJr|SINE|Alu -47326 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 118.5-44 chr17 71298469 71298661 + 1 NA Intergenic Intergenic -96386 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 167.667-23 chr14 20808098 20808330 + 1 NA Intergenic Intergenic -5370 NM_002933 6035 Hs.78224 NM_002933 ENSG00000129538 RNASE1 RAC1|RIB1|RNS1 ribonuclease A family member 1, pancreatic protein-coding 252.667-24 chr8 15835192 15835634 + 1 NA Intergenic L1MD|LINE|L1 295150 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 197.333-40 chr4 43578608 43579031 + 1 NA Intergenic L1MA9|LINE|L1 -86276 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 126.333-15 chr11 10241575 10241749 + 1 NA intron (NM_030962, intron 1 of 39) L1M5|LINE|L1 52545 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 207.333-42 chr5 144918623 144918886 + 1 NA Intergenic Intergenic 713363 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 130.167-47 chr3 74336255 74336503 + 1 NA intron (NM_020872, intron 11 of 21) intron (NM_020872, intron 11 of 21) 184761 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 143.333-95 chr8 133089344 133089605 + 1 NA intron (NM_001045556, intron 1 of 8) intron (NM_001045556, intron 1 of 8) 13128 NM_001045556 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 223.833-8 chr10 34759569 34759838 + 1 NA intron (NM_001184789, intron 1 of 22) intron (NM_001184789, intron 1 of 22) 55593 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 134.5-35 chr17 21215508 21215700 + 1 NA Intergenic Intergenic -1009 NM_003876 8834 Hs.592945 NM_003876 ENSG00000178307 TMEM11 C17orf35|PM1|PMI transmembrane protein 11 protein-coding 167.333-66 chr8 121966187 121966417 + 1 NA Intergenic MER20|DNA|hAT-Charlie -324862 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 254.333-7 chr14 71271282 71271689 + 1 NA Intergenic Intergenic -48991 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 322.333-5 chr3 183844431 183844962 + 1 NA intron (NM_001324437, intron 4 of 7) intron (NM_001324437, intron 4 of 7) -19119 NM_024871 79929 Hs.478465 NM_024871 ENSG00000180834 MAP6D1 MAPO6D1|SL21 MAP6 domain containing 1 protein-coding 127.667-54 chr22 27727408 27727758 + 1 NA Intergenic L2b|LINE|L2 74173 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 189.5-28 chr2 100285005 100285254 + 1 NA intron (NM_198461, intron 11 of 11) intron (NM_198461, intron 11 of 11) 37604 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 198.5-31 chr5 34897873 34898233 + 1 NA intron (NM_001317949, intron 10 of 10) MIR|SINE|MIR 17451 NR_026591 5810 Hs.38114 NM_002853 ENSG00000113456 RAD1 HRAD1|REC1 RAD1 checkpoint DNA exonuclease protein-coding 270.833-12 chr2 128712150 128712896 + 1 NA Intergenic L1MB3|LINE|L1 -152077 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 188.167-7 chr10 109555211 109555533 + 1 NA Intergenic L1ME4b|LINE|L1 367874 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 200.833-12 chr17 73049547 73049997 + 1 NA intron (NM_001352692, intron 3 of 9) L2a|LINE|L2 42916 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 481.833 chr11 113196544 113197194 + 1 NA intron (NM_181351, intron 1 of 18) THE1C|LTR|ERVL-MaLR 77032 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 198.667-52 chr7 30008170 30008578 + 1 NA Intergenic Intergenic -18085 NM_001145514 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 169.333-48 chr3 86376641 86376926 + 1 NA Intergenic Intergenic -105160 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 145.5-70 chr6 98649386 98649591 + 1 NA Intergenic Intergenic 182212 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 213.667-6 chr12 48395401 48395690 + 1 NA Intergenic Intergenic -44299 NM_001172682 121274 Hs.23492 NM_152320 ENSG00000167528 ZNF641 - zinc finger protein 641 protein-coding 205.167-31 chr4 103782392 103782664 + 1 NA Intergenic Intergenic -62543 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 222.667-19 chr2 66299126 66299383 + 1 NA Intergenic MER5A|DNA|hAT-Charlie 59074 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 235.167-9 chr17 62055253 62055537 + 1 NA intron (NM_005121, intron 2 of 29) AluSz6|SINE|Alu 9883 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 311.333-4 chr2 132758784 132759157 + 1 NA intron (NM_207481, intron 14 of 17) L1ME3D|LINE|L1 -87444 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 175.667-51 chr4 101725891 101726239 + 1 NA Intergenic Intergenic -64542 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 435.667-2 chr9 25953672 25954308 + 1 NA Intergenic MIR3|SINE|MIR -112685 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 242.167 chr1 45402100 45402415 + 1 NA intron (NM_007170, intron 3 of 10) AluJr|SINE|Alu -61787 NM_001293192 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 314.333-3 chr2 175405842 175406174 + 1 NA Intergenic Intergenic -224298 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 277.5-13 chr5 129629544 129629842 + 1 NA intron (NM_133638, intron 10 of 22) MamGypsy2-I|LTR|Gypsy -118401 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 152.167-42 chr3 119065107 119065447 + 1 NA intron (NM_152538, intron 3 of 8) L1MEg|LINE|L1 -30431 NM_001353321 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 207.5-10 chr13 67634872 67635161 + 1 NA Intergenic MLT1F2|LTR|ERVL-MaLR 262629 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 284.667-8 chr2 48867432 48867782 + 1 NA Intergenic L1PA14|LINE|L1 -111883 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 237.167-6 chr12 97504133 97504396 + 1 NA intron (NR_024037, intron 7 of 8) AluSz|SINE|Alu 12355 NR_031653 100302289 NR_031653 ENSG00000221479 MIR1251 MIRN1251|hsa-mir-1251 microRNA 1251 ncRNA 251.667-14 chr4 46430629 46430939 + 1 NA Intergenic Intergenic -40656 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 167.167-50 chr5 149577994 149578333 + 1 NA Intergenic MLT1N2|LTR|ERVL-MaLR -3335 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 132.5-8 chr10 74693239 74693451 + 1 NA intron (NM_001369124, intron 9 of 9) intron (NM_001369124, intron 9 of 9) -131910 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 153.833-32 chr2 39070404 39070691 + 1 NA intron (NM_005633, intron 1 of 22) L2c|LINE|L2 49916 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 134.333-12 chr10 50560765 50560960 + 1 NA intron (NM_147156, intron 2 of 10) intron (NM_147156, intron 2 of 10) 63094 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 206.667-17 chr13 101299867 101300249 + 1 NA intron (NM_001350749, intron 7 of 43) intron (NM_001350749, intron 7 of 43) 116450 NM_001350751 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 241.333-20 chr4 92086425 92086934 + 1 NA Intergenic Intergenic 190623 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 230.333-8 chr18 37081848 37082444 + 1 NA intron (NM_001353919, intron 6 of 8) intron (NM_001353919, intron 6 of 8) -158332 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 226.667-6 chr1 197846695 197847250 + 1 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -55658 NM_001024594 388722 Hs.61329 NM_001024594 ENSG00000203724 C1orf53 - chromosome 1 open reading frame 53 protein-coding 254.333-13 chr3 182416411 182416761 + 1 NA Intergenic Intergenic 69776 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 144.5-70 chr4 180489422 180489576 + 1 NA Intergenic Intergenic 669650 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 452.333 chr2 54618634 54619422 + 1 NA intron (NM_178313, intron 6 of 30) intron (NM_178313, intron 6 of 30) 60634 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 176.333-26 chr14 79032527 79032924 + 1 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -167257 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 273.667-11 chr2 129072797 129073134 + 1 NA Intergenic ERV24_Prim-int|LTR|ERV1 200926 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 187.333-82 chr9 100480148 100480631 + 1 NA intron (NM_003692, intron 1 of 9) Tigger13a|DNA|TcMar-Tigger 7240 NM_003692 8577 Hs.598100 NM_003692 ENSG00000241697 TMEFF1 C9orf2|CT120.1|H7365|TR-1 transmembrane protein with EGF like and two follistatin like domains 1 protein-coding 187.667 chr1 29219736 29219952 + 1 NA intron (NR_146215, intron 1 of 10) MER46C|DNA|TcMar-Tigger 11090 NM_016011 51102 Hs.183646 NM_016011 ENSG00000116353 MECR CGI-63|DYTOABG|ETR1|FASN2B|NRBF1 mitochondrial trans-2-enoyl-CoA reductase protein-coding 155.667-77 chr7 84866046 84866384 + 1 NA Intergenic Intergenic 255716 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 131.167-63 chr5 65243898 65244088 + 1 NA intron (NR_135689, intron 15 of 25) intron (NR_135689, intron 15 of 25) 237927 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 245.833-15 chr4 121667339 121667762 + 1 NA TTS (NM_001154) TTS (NM_001154) 29430 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 186.667-44 chr20 37856645 37856964 + 1 NA intron (NM_001281495, intron 14 of 16) intron (NM_001281495, intron 14 of 16) -46323 NM_080607 128434 Hs.517029 NM_080607 ENSG00000132821 VSTM2L C20orf102|dJ1118M15.2 V-set and transmembrane domain containing 2 like protein-coding 131.5-70 chr6 48410174 48410360 + 1 NA Intergenic Intergenic -341578 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 217.667-28 chr3 78707916 78708260 + 1 NA intron (NM_001145845, intron 6 of 28) intron (NM_001145845, intron 6 of 28) 311371 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 333.666 chr16 77138815 77139525 + 1 NA Intergenic L1M5|LINE|L1 -52020 NM_001286640 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 161.667-21 chr10 84129077 84129468 + 1 NA Intergenic L2|LINE|L2 -10237 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 218.167-2 chr1 187937929 187938383 + 1 NA Intergenic L1ME1|LINE|L1 494528 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 128.333-92 chr5 16744123 16744431 + 1 NA intron (NM_012334, intron 19 of 40) intron (NM_012334, intron 19 of 40) -127219 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 214.833-24 chr7 114075530 114075948 + 1 NA Intergenic MLT1F2|LTR|ERVL-MaLR -10588 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 120.333-64 chr2 228087146 228087320 + 1 NA intron (NM_030623, intron 3 of 10) L1M4b|LINE|L1 94412 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 204.833-7 chr10 105196877 105197502 + 1 NA intron (NM_014978, intron 14 of 26) MLT1D|LTR|ERVL-MaLR -530973 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 130.333-48 chr2 40643467 40643681 + 1 NA Intergenic Intergenic -131139 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 120.333-80 chr3 192254083 192254251 + 1 NA intron (NR_046596, intron 1 of 4) L1MA8|LINE|L1 15537 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 167.5-11 chr10 64960056 64960299 + 1 NA Intergenic Intergenic -35659 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 196.333-53 chr7 135372994 135373423 + 1 NA intron (NM_001190849, intron 10 of 11) L3|LINE|CR1 136894 NM_013316 4850 Hs.490224 NM_013316 ENSG00000080802 CNOT4 CLONE243|NOT4|NOT4H CCR4-NOT transcription complex subunit 4 protein-coding 133.667-83 chr7 3675435 3675607 + 1 NA intron (NM_152744, intron 4 of 44) L2a|LINE|L2 374269 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 230.833-5 chr18 77402507 77403066 + 1 NA Intergenic L1MC|LINE|L1 152938 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 232.167-13 chr14 68148873 68149164 + 1 NA intron (NM_133509, intron 7 of 10) L1MEc|LINE|L1 325426 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 306.667 chr1 115313492 115314179 + 1 NA intron (NM_002506, intron 1 of 2) intron (NM_002506, intron 1 of 2) 24401 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 262.333-29 chr8 42348759 42349268 + 1 NA intron (NM_002690, intron 3 of 13) intron (NM_002690, intron 3 of 13) 10519 NM_002690 5423 Hs.654484 NM_002690 ENSG00000070501 POLB - DNA polymerase beta protein-coding 292.5-19 chr9 35406907 35407419 + 1 NA intron (NR_003581, intron 1 of 17) intron (NR_003581, intron 1 of 17) 408 NR_003581 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 229.5-17 chr3 84076445 84076871 + 1 NA Intergenic Penelope1_Vert|LINE|Penelope 792917 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 144.333-68 chr5 45409716 45409908 + 1 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 286568 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 214.5-42 chr8 136528345 136528614 + 1 NA Intergenic L1MC1|LINE|L1 -2319 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 268.333-9 chr2 185035169 185035835 + 1 NA Intergenic Intergenic 131570 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 168.833-13 chr12 19914679 19915203 + 1 NA Intergenic Intergenic -99744 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 203.667-5 chr10 35489756 35490195 + 1 NA intron (NM_181698, intron 4 of 11) Charlie2a|DNA|hAT-Charlie -115366 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 147.667-62 chr6 79487299 79487544 + 1 NA exon (NM_181714, exon 9 of 9) exon (NM_181714, exon 9 of 9) 50009 NM_181714 167691 Hs.21945 NM_181714 ENSG00000135338 LCA5 C6orf152 lebercilin LCA5 protein-coding 258.667-9 chr14 76519639 76520071 + 1 NA Intergenic L1MDa|LINE|L1 148508 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 230.5-22 chr7 109179632 109180255 + 1 NA Intergenic LTR16E2|LTR|ERVL -295356 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 113.5-45 chr2 14791212 14791482 + 1 NA Intergenic Intergenic 158630 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 174.5-12 chr14 75081942 75082131 + 1 NA 3' UTR (NM_001329238, exon 22 of 22) 3' UTR (NM_001329238, exon 22 of 22) 12395 NM_001042430 79696 Hs.48642 NM_024643 ENSG00000119703 ZC2HC1C C14orf140|FAM164C zinc finger C2HC-type containing 1C protein-coding 139.5-59 chr6 44991466 44991646 + 1 NA intron (NM_181356, intron 8 of 12) AluSx3|SINE|Alu 206214 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 143.333-70 chr5 80910711 80911075 + 1 NA Intergenic L1ME1|LINE|L1 -49470 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 290.833-4 chr5 164844875 164845364 + 1 NA Intergenic L1PA15|LINE|L1 374840 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 209.667-32 chr5 56916071 56916485 + 1 NA intron (NM_001171990, intron 5 of 5) AluSg|SINE|Alu 6216 NM_001323018 133383 Hs.85950 NM_153706 ENSG00000155542 SETD9 C5orf35 SET domain containing 9 protein-coding 232.333-21 chr3 31824601 31824935 + 1 NA intron (NM_001174060, intron 3 of 10) intron (NM_001174060, intron 3 of 10) 120555 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 151.5-43 chr21 34219076 34219268 + 1 NA Intergenic Intergenic 38495 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 155.333-23 chr12 104244301 104244569 + 1 NA intron (NM_001093771, intron 1 of 16) intron (NM_001093771, intron 1 of 16) 28656 NM_001093771 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 189.667-3 chr10 29850226 29850741 + 1 NA Intergenic MLT1F|LTR|ERVL-MaLR -113547 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 128.333-49 chr17 69058098 69058483 + 1 NA intron (NM_080283, intron 1 of 38) intron (NM_080283, intron 1 of 38) 2637 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 149.333-34 chr14 57547988 57548227 + 1 NA Intergenic Intergenic -54250 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 146.667-6 chr1 171997231 171997554 + 1 NA intron (NM_001278252, intron 4 of 14) intron (NM_001278252, intron 4 of 14) 133200 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 113.667-51 chr17 71275779 71275973 + 1 NA Intergenic Intergenic -73697 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 188.5-3 chr1 97692036 97692264 + 1 NA intron (NM_000110, intron 6 of 22) intron (NM_000110, intron 6 of 22) -104771 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 178.667-34 chr20 20229999 20230434 + 1 NA intron (NM_015585, intron 18 of 26) intron (NM_015585, intron 18 of 26) -137888 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 150.5-87 chr9 104400860 104401013 + 1 NA Intergenic L1MDa|LINE|L1 -103327 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 115.5-19 chr10 92862036 92862258 + 1 NA intron (NM_001319195, intron 1 of 21) L1MB5|LINE|L1 13627 NM_019053 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 190.833-12 chr13 89017692 89018130 + 1 NA Intergenic Intergenic -217380 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 117.667-11 chr10 19313020 19313217 + 1 NA intron (NM_001142308, intron 21 of 39) MER5A|DNA|hAT-Charlie 264317 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 234.333-14 chr17 63092766 63093238 + 1 NA intron (NM_025185, intron 3 of 25) L1PA5|LINE|L1 126767 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 335.333-8 chr8 136428795 136429573 + 1 NA Intergenic L1M1|LINE|L1 -101614 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 193.5-7 chr10 125874667 125875053 + 1 NA intron (NM_018180, intron 1 of 10) L1MC4|LINE|L1 6432 NM_018180 55760 Hs.370292 NM_018180 ENSG00000089876 DHX32 DDX32|DHLP1 DEAH-box helicase 32 (putative) protein-coding 295.833 chr1 49452749 49453174 + 1 NA intron (NR_046839, intron 2 of 3) intron (NR_046839, intron 2 of 3) 19124 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 145.667-46 chr2 10582348 10582522 + 1 NA intron (NR_048552, intron 18 of 19) intron (NR_048552, intron 18 of 19) 107540 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 222.667-5 chr12 88184085 88184492 + 1 NA intron (NM_181783, intron 10 of 13) LTR22E|LTR|ERVK 41981 NM_001366580 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 121.667-42 chr18 967693 967919 + 1 NA Intergenic Intergenic -39813 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 248.333-3 chr14 60797152 60797562 + 1 NA intron (NM_001177963, intron 2 of 6) intron (NM_001177963, intron 2 of 6) 62596 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 140.667-8 chr1 230268081 230268261 + 1 NA intron (NM_004481, intron 14 of 15) intron (NM_004481, intron 14 of 15) 158161 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 167.667-10 chr10 63193981 63194198 + 1 NA intron (NM_001322258, intron 13 of 24) intron (NM_001322258, intron 13 of 24) 60761 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 193.833-12 chr13 56237157 56237508 + 1 NA Intergenic Intergenic -903586 NM_001130404 729233 Hs.723090 NM_001130404 ENSG00000204918 PRR20B PRR20|PRR20A|PRR20C|PRR20D|PRR20E proline rich 20B protein-coding 314.5-7 chr14 54514680 54515040 + 1 NA intron (NM_006568, intron 1 of 5) L1MEc|LINE|L1 4954 NM_006568 10668 Hs.59106 NM_006568 ENSG00000100532 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 310.5-13 chr5 78089044 78089600 + 1 NA intron (NM_003664, intron 22 of 26) intron (NM_003664, intron 22 of 26) 131075 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 174.667-20 chr14 54435059 54435268 + 1 NA intron (NM_005776, intron 2 of 4) intron (NM_005776, intron 2 of 4) 6211 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 147.833-71 chr9 19597345 19597492 + 1 NA intron (NM_020344, intron 3 of 9) intron (NM_020344, intron 3 of 9) 188409 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 168.333-47 chr7 38385294 38385556 + 1 NA intron (NM_001635, intron 20 of 20) intron (NM_001635, intron 20 of 20) 43848 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 187.167-26 chr3 176176351 176176698 + 1 NA Intergenic Intergenic -68027 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 129.333-54 chr20 22560565 22560805 + 1 NA non-coding (NR_001558, exon 4 of 4) non-coding (NR_001558, exon 4 of 4) 17957 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|FALCOR|HCCDR1|NCRNA00261|TCONS_00027846|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 175.333-48 chr5 33640911 33641230 + 1 NA intron (NM_001324512, intron 11 of 21) intron (NM_001324512, intron 11 of 21) 200294 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 142.667-2 chr1 24752221 24752418 + 1 NA intron (NM_013943, intron 1 of 5) MLT1J2|LTR|ERVL-MaLR 6872 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 201.5-30 chr5 108303699 108304013 + 1 NA intron (NM_001163315, intron 4 of 8) Charlie1|DNA|hAT-Charlie 78242 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 204.333-28 chr2 189266570 189266804 + 1 NA Intergenic L1MB7|LINE|L1 -86926 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 297.833-9 chr8 121176837 121177559 + 1 NA Intergenic Intergenic -365152 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 172.167-7 chr10 37367060 37367263 + 1 NA Intergenic Intergenic 57975 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 189.333-18 chr17 54233920 54234260 + 1 NA Intergenic Intergenic 411163 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 145.333-7 chr1 227577180 227577446 + 1 NA intron (NM_001367909, intron 1 of 3) L1PA13|LINE|L1 13757 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 245.167-15 chr7 2896262 2896762 + 1 NA Intergenic Intergenic -52204 NM_007353 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 270.333-10 chr9 83057413 83057765 + 1 NA intron (NM_152573, intron 1 of 16) intron (NM_152573, intron 1 of 16) 5553 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 218.333-8 chr10 96973503 96973811 + 1 NA intron (NM_001346516, intron 7 of 7) intron (NM_001346516, intron 7 of 7) -129099 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 251.333-11 chr2 37125684 37126134 + 1 NA intron (NM_001135652, intron 8 of 13) MIR3|SINE|MIR 21913 NM_001135652 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 113.5-9 chr1 237716898 237717056 + 1 NA intron (NM_001035, intron 71 of 104) intron (NM_001035, intron 71 of 104) -145198 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 119.5-26 chr12 41635237 41635425 + 1 NA Intergenic Intergenic -128858 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 171.667-23 chr14 63229791 63230241 + 1 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 25573 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 179.667-15 chr14 86026748 86026969 + 1 NA intron (NR_110155, intron 1 of 3) L1ME3A|LINE|L1 92180 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 264.667-21 chr4 52070055 52070682 + 1 NA intron (NR_123728, intron 5 of 12) intron (NR_123728, intron 5 of 12) 19064 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 185.333-32 chr2 160127342 160127685 + 1 NA intron (NM_001282390, intron 9 of 13) MER4D1|LTR|ERV1 -64898 NM_001195641 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 164.667-80 chrX 154043984 154044250 + 1 NA intron (NM_001369393, intron 1 of 3) BC200|scRNA|scRNA -24128 NR_031757 100313781 NR_031757 ENSG00000284286 MIR718 hsa-mir-718 microRNA 718 ncRNA 212.5-17 chr22 39769293 39769549 + 1 NA intron (NM_152512, intron 5 of 6) LTR16C|LTR|ERVL 124339 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 157.667-13 chr11 68516192 68516478 + 1 NA intron (NR_147967, intron 2 of 25) Tigger4b|DNA|TcMar-Tigger 55583 NM_001352369 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 223.333-4 chr10 65251706 65252051 + 1 NA Intergenic Intergenic -319547 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 125.5-56 chr3 174894722 174894890 + 1 NA intron (NM_207015, intron 1 of 13) L1MA1|LINE|L1 35472 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 113.5-74 chr5 154738547 154738720 + 1 NA intron (NM_001367717, intron 1 of 18) intron (NM_001367717, intron 1 of 18) -16744 NM_033551 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 139.167-60 chr6 133202682 133202924 + 1 NA Intergenic Intergenic -38554 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 139.667-74 chr5 35071161 35071432 + 1 NA intron (NR_037910, intron 4 of 7) L1MC5a|LINE|L1 -23347 NM_031900 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 123.833-22 chr15 71584452 71584774 + 1 NA intron (NM_001286429, intron 1 of 11) L1MA9|LINE|L1 37377 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 122.333-59 chr20 7846157 7846317 + 1 NA Intergenic L1MEc|LINE|L1 94221 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 157.333-37 chr2 61552687 61552922 + 1 NA Intergenic AluJb|SINE|Alu -14448 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 180.333-10 chr10 43985747 43986037 + 1 NA Intergenic MLT1A|LTR|ERVL-MaLR 73490 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 218.333-28 chr4 97724553 97724848 + 1 NA intron (NM_174952, intron 9 of 10) L1M4|LINE|L1 357774 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 197.667-45 chr4 95502831 95503089 + 1 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 46013 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 128.333-113 chr7 48789359 48789698 + 1 NA Intergenic Intergenic -135019 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 127.667-85 chr7 45441541 45441791 + 1 NA Intergenic L2a|LINE|L2 -132474 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 187.833-9 chr11 112133508 112133818 + 1 NA Intergenic Intergenic 30431 NM_001562 3606 Hs.83077 NM_001562 ENSG00000150782 IL18 IGIF|IL-18|IL-1g|IL1F4 interleukin 18 protein-coding 201.5-20 chr2 222923982 222924388 + 1 NA intron (NM_004457, intron 10 of 16) intron (NM_004457, intron 10 of 16) 63149 NM_203372 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 128.667-50 chr16 78844195 78844385 + 1 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 744636 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 214.333-27 chr20 44094706 44095201 + 1 NA Intergenic Intergenic 92235 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 235.667-22 chr6 159475276 159475580 + 1 NA Intergenic Intergenic 91897 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 161.667-65 chr5 10745799 10746156 + 1 NA intron (NM_004394, intron 2 of 3) MER46C|DNA|TcMar-Tigger 15257 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 176.333-36 chr2 149163206 149163569 + 1 NA intron (NM_001317002, intron 4 of 7) intron (NM_001317002, intron 4 of 7) 45213 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 396.333-2 chr3 24154849 24155326 + 1 NA intron (NM_001354708, intron 4 of 9) intron (NM_001354708, intron 4 of 9) 3763 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 126.167-30 chr16 80830762 80831185 + 1 NA intron (NR_131948, intron 2 of 2) intron (NR_131948, intron 2 of 2) -26375 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 153.667-82 chr9 29372191 29372481 + 1 NA Intergenic L2|LINE|L2 -158735 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 145.5-39 chr2 195889900 195890069 + 1 NA intron (NM_018897, intron 31 of 64) intron (NM_018897, intron 31 of 64) 178853 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 250.333-5 chr10 74677401 74677670 + 1 NA intron (NM_001369124, intron 9 of 9) intron (NM_001369124, intron 9 of 9) -147720 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 124.5-61 chr5 116673713 116673919 + 1 NA Intergenic Arthur1B|DNA|hAT-Tip100 88393 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 269.5 chr1 39426962 39427549 + 1 NA intron (NM_012090, intron 55 of 92) MIRc|SINE|MIR 18182 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 364.833 chr2 13779246 13779927 + 1 NA Intergenic Intergenic 621372 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 218.667-28 chr5 107387018 107387288 + 1 NA intron (NM_001962, intron 4 of 4) intron (NM_001962, intron 4 of 4) 283784 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 190.167-13 chr14 78763411 78763818 + 1 NA intron (NR_073547, intron 8 of 20) LTR86B1|LTR|ERVL 359895 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 147.833-43 chr3 36036904 36037315 + 1 NA Intergenic L1MA6|LINE|L1 292633 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 341.167-3 chr22 28045011 28045611 + 1 NA intron (NM_001145418, intron 12 of 22) Tigger4a|DNA|TcMar-Tigger -124699 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 328.167-5 chr7 14979098 14979552 + 1 NA Intergenic Intergenic -4467 NM_001350722 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 267.667-9 chr16 35763056 35763693 + 1 NA Intergenic ALR/Alpha|Satellite|centr 16822 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 174.333-34 chr21 18351374 18351879 + 1 NA intron (NM_002772, intron 10 of 24) THE1D|LTR|ERVL-MaLR 52159 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 378.833 chr1 63555142 63555606 + 1 NA exon (NM_032437, exon 9 of 14) exon (NM_032437, exon 9 of 14) 6394 NR_002771 79469 Hs.659291 NR_002771 DLEU2L BCMSUNL deleted in lymphocytic leukemia 2 like ncRNA 270.667-20 chr6 53781068 53781885 + 1 NA Intergenic L1MA5A|LINE|L1 -13529 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 240.833-17 chr2 196672814 196673296 + 1 NA intron (NM_001080539, intron 9 of 27) intron (NM_001080539, intron 9 of 27) 33340 NM_001353339 284992 Hs.132519 NM_173466 ENSG00000144395 CCDC150 - coiled-coil domain containing 150 protein-coding 291.167-2 chr10 60674318 60674903 + 1 NA intron (NM_001204403, intron 1 of 43) MSTB|LTR|ERVL-MaLR 58918 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 114.5-40 chr18 7814830 7814993 + 1 NA intron (NM_002845, intron 2 of 30) LOR1b|LTR|ERV1 247595 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 383.667-6 chr8 128219249 128219640 + 1 NA Intergenic Intergenic 69328 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 244.333-34 chr8 119259179 119259644 + 1 NA Intergenic L2a|LINE|L2 -12554 NR_149113 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 145.833-3 chr1 91376720 91377149 + 1 NA intron (NM_001017975, intron 11 of 38) L1ME4a|LINE|L1 27903 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 119.167-3 chr1 91501848 91502232 + 1 NA intron (NM_001134420, intron 2 of 11) intron (NM_001134420, intron 2 of 11) 932 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 218.333-10 chr12 40658117 40658531 + 1 NA Intergenic Intergenic -34115 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 216.5-24 chr5 51001559 51001860 + 1 NA Intergenic Intergenic -31522 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 148.333-67 chr3 120163649 120163902 + 1 NA Intergenic Intergenic -69328 NM_001354596 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 255.333-32 chrX 143883286 143883578 + 1 NA promoter-TSS (NM_001012989) promoter-TSS (NM_001012989) -639 NR_121210 389898 Hs.585177 NM_001012989 ENSG00000276380 UBE2NL Li174 ubiquitin conjugating enzyme E2 N like (gene/pseudogene) protein-coding 265.333-14 chr3 169178199 169178747 + 1 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -31002 NM_001164000 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 146.5-81 chr7 82795522 82795722 + 1 NA intron (NM_033026, intron 22 of 24) intron (NM_033026, intron 22 of 24) -351666 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 164.333-78 chr7 107776663 107776916 + 1 NA intron (NM_000111, intron 13 of 20) intron (NM_000111, intron 13 of 20) 26444 NM_000111 1811 Hs.1650 NM_000111 ENSG00000091138 SLC26A3 CLD|DRA solute carrier family 26 member 3 protein-coding 182.667-8 chr11 19764310 19764694 + 1 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -4419 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 155.667-48 chr22 34055342 34055785 + 1 NA Intergenic MLT1H2|LTR|ERVL-MaLR -132675 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 196.167-16 chr17 18904651 18904873 + 1 NA intron (NM_001353099, intron 8 of 11) intron (NM_001353099, intron 8 of 11) 39293 NM_001243940 5636 Hs.632236 NM_002767 ENSG00000141127 PRPSAP2 PAP41 phosphoribosyl pyrophosphate synthetase associated protein 2 protein-coding 147.333-93 chr8 133398738 133399024 + 1 NA Intergenic MIRb|SINE|MIR -101577 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 115.667-82 chr4 62161389 62161552 + 1 NA intron (NR_110595, intron 1 of 7) intron (NR_110595, intron 1 of 7) 295 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 187.833-8 chr11 34877645 34878224 + 1 NA Intergenic L2c|LINE|L2 -38196 NM_001135024 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 126.333-21 chr12 59946185 59946422 + 1 NA Intergenic L1MC3|LINE|L1 256933 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 161.333-33 chr18 74050288 74050533 + 1 NA Intergenic Intergenic 97424 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 150.333-38 chr13 98178850 98179060 + 1 NA intron (NM_005766, intron 1 of 26) HAL1|LINE|L1 -1686 NM_178861 140432 Hs.296045 NM_178861 ENSG00000139797 RNF113B RNF161|ZNF183L1|bA10G5.1 ring finger protein 113B protein-coding 289.167-15 chr3 124053400 124054153 + 1 NA Intergenic Intergenic -40905 NM_001322988 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 162.333-75 chr8 121174895 121175069 + 1 NA Intergenic Intergenic -362936 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 183.667-82 chr8 118175392 118175664 + 1 NA intron (NR_146234, intron 4 of 5) L1PA15|LINE|L1 -63709 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 192.5-9 chr12 3982316 3982765 + 1 NA Intergenic L1MEc|LINE|L1 -109092 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 138.667-16 chr11 85529117 85529378 + 1 NA intron (NM_001142699, intron 3 of 27) MLT1I|LTR|ERVL-MaLR 98023 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 232.5-21 chr22 33107631 33108009 + 1 NA promoter-TSS (NR_134617) promoter-TSS (NR_134617) -709 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 117.333-4 chr1 46836728 46836941 + 1 NA Intergenic Intergenic 37788 NM_001319162 1580 Hs.436317 NM_000779 ENSG00000142973 CYP4B1 CYPIVB1|P-450HP cytochrome P450 family 4 subfamily B member 1 protein-coding 129.333-7 chr10 22032648 22032811 + 1 NA Intergenic Intergenic -28999 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 125.333-55 chr17 43722994 43723211 + 1 NA Intergenic Intergenic 35689 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|DAND6|SOST1|VBCH sclerostin protein-coding 277.667-18 chr8 103073329 103073950 + 1 NA TTS (NM_001695) TTS (NM_001695) -47393 NR_145429 379034 Hs.591862 NR_145429 LINC01181 - long intergenic non-protein coding RNA 1181 ncRNA 137.667-46 chr19 32064794 32065007 + 1 NA Intergenic L1PA13|LINE|L1 39038 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 172.5-37 chr3 83656317 83656652 + 1 NA Intergenic Intergenic 1213091 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 180.333-59 chr9 16520441 16520955 + 1 NA intron (NM_001317939, intron 4 of 6) intron (NM_001317939, intron 4 of 6) -206116 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 215.667-45 chr5 159865783 159866024 + 1 NA intron (NR_109891, intron 2 of 2) intron (NR_109891, intron 2 of 2) 5481 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 187.5-33 chr4 45073288 45073582 + 1 NA Intergenic Intergenic -346801 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 301.5-8 chr3 43301438 43302025 + 1 NA intron (NM_017719, intron 2 of 6) intron (NM_017719, intron 2 of 6) 15191 NM_017719 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 158.333-7 chr10 17208985 17209308 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -7075 NM_001351223 1787 Hs.351665 NM_004412 ENSG00000107614 TRDMT1 DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1 tRNA aspartic acid methyltransferase 1 protein-coding 249.667-20 chr2 83829657 83829945 + 1 NA Intergenic Intergenic 306987 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 183.5-15 chr15 95051767 95052020 + 1 NA Intergenic Intergenic 196530 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 230.333-13 chr2 189235046 189235385 + 1 NA Intergenic Intergenic -55454 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 368.667 chr10 94450155 94450761 + 1 NA intron (NM_015188, intron 2 of 12) L2c|LINE|L2 47917 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 177.5-28 chr15 37093040 37093328 + 1 NA intron (NM_172316, intron 6 of 12) intron (NM_172316, intron 6 of 12) 5512 NM_172315 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 128.667-54 chr17 65510844 65511030 + 1 NA Intergenic L1ME2|LINE|L1 50711 NM_004655 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 119.167-98 chr9 13325875 13326131 + 1 NA Intergenic FLAM_C|SINE|Alu -46290 NM_001330637 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 120.5-60 chr3 98221768 98222007 + 1 NA Intergenic Intergenic -42357 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 165.667-13 chr10 82644538 82644784 + 1 NA intron (NR_163253, intron 3 of 10) LTR37A|LTR|ERV1 -411741 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 126.167-49 chr2 232022879 232023241 + 1 NA intron (NR_046477, intron 3 of 18) intron (NR_046477, intron 3 of 18) 61347 NR_046477 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 198.667-13 chr12 2014320 2014537 + 1 NA Intergenic L2b|LINE|L2 -9893 NR_135060 196513 Hs.130934 NM_152640 ENSG00000151065 DCP1B DCP1 decapping mRNA 1B protein-coding 144.5-83 chr6 153016436 153016628 + 1 NA intron (NM_012419, intron 4 of 4) intron (NM_012419, intron 4 of 4) -13717 NM_001301872 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 121.667-19 chr11 126646278 126646409 + 1 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) -6435 NR_120532 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 169.667-41 chr2 121252021 121252247 + 1 NA intron (NM_014553, intron 2 of 14) AluJb|SINE|Alu 33068 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 224.833 chr1 106848542 106848972 + 1 NA Intergenic L1M1|LINE|L1 30518 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 189.667-23 chr16 23496449 23496713 + 1 NA intron (NM_015044, intron 1 of 16) AluJb|SINE|Alu 13913 NM_015044 23062 Hs.460336 NM_015044 ENSG00000103365 GGA2 VEAR golgi associated, gamma adaptin ear containing, ARF binding protein 2 protein-coding 259.167-2 chr18 71797146 71797426 + 1 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -15060 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 162.833-39 chr5 85320342 85320802 + 1 NA Intergenic MER61C|LTR|ERV1 -935692 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 176.667-52 chr4 36503484 36503682 + 1 NA intron (NR_149124, intron 3 of 4) MLT1O|LTR|ERVL-MaLR -77155 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 148.333-82 chr5 80339789 80340124 + 1 NA Intergenic AluJr4|SINE|Alu 12010 NR_003665 441089 Hs.568291 NR_003665 CRSP8P - mediator complex subunit 27 pseudogene pseudo 181.5-38 chr3 55014908 55015200 + 1 NA intron (NM_018398, intron 34 of 37) intron (NM_018398, intron 34 of 37) -47952 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 231.333-14 chr14 83190858 83191142 + 1 NA Intergenic L1M4b|LINE|L1 548368 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 200.667-48 chr5 175086685 175086901 + 1 NA Intergenic MER45B|DNA|hAT-Tip100 -91062 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 143.5-86 chr8 90320693 90321075 + 1 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 99396 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 167.333-6 chr10 14606924 14607271 + 1 NA intron (NM_001282695, intron 2 of 5) intron (NM_001282695, intron 2 of 5) -2696 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 249.333-27 chr8 114009467 114009934 + 1 NA Intergenic Intergenic -572761 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 116.333-76 chr4 172949898 172950275 + 1 NA intron (NM_001034845, intron 9 of 12) intron (NM_001034845, intron 9 of 12) -218725 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 188.833-44 chrX 114120368 114120619 + 1 NA Intergenic L1MEf|LINE|L1 -182275 NR_131204 105463123 Hs.550218 NR_131204 XACT - X active specific transcript ncRNA 116.667-102 chr7 107601233 107601490 + 1 NA intron (NR_163929, intron 6 of 7) intron (NR_163929, intron 6 of 7) 21115 NR_163930 244.333-4 chr11 111750740 111751184 + 1 NA intron (NM_181699, intron 10 of 15) AluSz|SINE|Alu 15427 NM_181700 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 195.167-30 chr5 63899410 63899718 + 1 NA Intergenic L1MDa|LINE|L1 62728 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 215.5-15 chr16 48306769 48307180 + 1 NA intron (NM_031490, intron 11 of 14) intron (NM_031490, intron 11 of 14) 58913 NM_001006610 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 195.833-29 chr8 41238002 41238661 + 1 NA Intergenic L1MCa|LINE|L1 32812 NR_049801 100847068 NR_049801 ENSG00000263372 MIR548AO - microRNA 548ao ncRNA 147.667-29 chr18 34312163 34312357 + 1 NA Intergenic Intergenic -88709 NM_001198546 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 218.667-43 chr7 149666230 149666585 + 1 NA Intergenic Intergenic -41617 NR_027789 79970 Hs.520785 NM_024910 ENSG00000133624 ZNF767P ZNF767 zinc finger family member 767, pseudogene pseudo 193.333-39 chr3 185609068 185609548 + 1 NA exon (NM_021627, exon 7 of 17) exon (NM_021627, exon 7 of 17) 23013 NM_021627 59343 Hs.401388 NM_021627 ENSG00000163904 SENP2 AXAM2|SMT3IP2 SUMO specific peptidase 2 protein-coding 119.833-83 chr8 71254480 71254801 + 1 NA intron (NM_001370335, intron 14 of 20) L1MB2|LINE|L1 102066 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 165.667-24 chr14 79854432 79854824 + 1 NA intron (NR_073547, intron 20 of 20) intron (NR_073547, intron 20 of 20) -356791 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 219.5-21 chr2 46795726 46796112 + 1 NA Intergenic MER2|DNA|TcMar-Tigger -20749 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 219.667-22 chr5 35781787 35782207 + 1 NA intron (NM_024867, intron 30 of 36) intron (NM_024867, intron 30 of 36) -74894 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 126.667 chr1 12348077 12348331 + 1 NA intron (NM_015378, intron 44 of 69) intron (NM_015378, intron 44 of 69) 118174 NM_015378 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 204.5-8 chr11 83966078 83966699 + 1 NA intron (NM_001142699, intron 12 of 27) intron (NM_001142699, intron 12 of 27) -283963 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 241.667-6 chr11 46288798 46289267 + 1 NA intron (NM_052854, intron 1 of 11) intron (NM_052854, intron 1 of 11) 11370 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS|OI16 cAMP responsive element binding protein 3 like 1 protein-coding 122.667-5 chr10 32440459 32440601 + 1 NA non-coding (NR_120660, exon 2 of 3) non-coding (NR_120660, exon 2 of 3) 5526 NR_120660 101929431 Hs.639819 NR_120660 LOC101929431 - uncharacterized LOC101929431 ncRNA 205.5 chr1 33778027 33778319 + 1 NA intron (NM_052896, intron 12 of 69) L2b|LINE|L2 -82302 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 162.5-57 chr5 28654801 28654975 + 1 NA Intergenic Intergenic -271982 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 147.5-35 chr16 64073970 64074136 + 1 NA Intergenic MIRc|SINE|MIR 1048010 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 204.5-14 chr13 99884134 99884529 + 1 NA intron (NR_104592, intron 7 of 9) L2b|LINE|L2 72834 NR_120421 101927437 Hs.619936 NR_120421 LOC101927437 - uncharacterized LOC101927437 ncRNA 113.333-52 chr2 107097383 107097540 + 1 NA Intergenic MLT1F2|LTR|ERVL-MaLR -210352 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 280.333-14 chr4 120503021 120503786 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR 419463 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 165.333-20 chr14 73843380 73843636 + 1 NA Intergenic MIRc|SINE|MIR -8323 NM_001371327 182.333-25 chr17 55157005 55157361 + 1 NA intron (NM_178509, intron 17 of 17) intron (NM_178509, intron 17 of 17) -107777 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 376.5-3 chr1 216976598 216977027 + 1 NA intron (NM_001134285, intron 1 of 8) intron (NM_001134285, intron 1 of 8) -37139 NM_001243512 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 182.833-7 chr10 83196923 83197113 + 1 NA Intergenic L1MC3|LINE|L1 480071 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 167.5-53 chr6 44895508 44895695 + 1 NA intron (NM_181356, intron 12 of 12) intron (NM_181356, intron 12 of 12) 302169 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 148.333-38 chr17 10192763 10192971 + 1 NA intron (NM_201433, intron 1 of 13) MamRTE1|LINE|RTE-BovB 5739 NM_201433 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 144.5-38 chr18 6174277 6174497 + 1 NA intron (NM_001365769, intron 12 of 16) L1ME2|LINE|L1 -82357 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 141.333-40 chr16 85278740 85279062 + 1 NA Intergenic Intergenic -4057 NR_038859 197196 Hs.679002 NM_153238 ENSG00000179219 LINC00311 NCRNA00311|TMEM148 long intergenic non-protein coding RNA 311 ncRNA 142.833-51 chr4 58365131 58365326 + 1 NA Intergenic MLT1F2|LTR|ERVL-MaLR 171100 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 185.5-5 chr1 213107353 213107593 + 1 NA intron (NR_146208, intron 3 of 10) L1MB7|LINE|L1 56232 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 122.167-12 chr11 115743433 115743581 + 1 NA Intergenic Intergenic -8745 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 412.5-5 chr6 111352411 111352945 + 1 NA intron (NM_001286431, intron 21 of 34) intron (NM_001286431, intron 21 of 34) 93339 NM_153369 91749 Hs.400572 NM_153369 ENSG00000173214 MFSD4B KIAA1919|NaGLT1 major facilitator superfamily domain containing 4B protein-coding 158.333-47 chr20 44899517 44899784 + 1 NA intron (NM_003404, intron 2 of 6) intron (NM_003404, intron 2 of 6) -10410 NR_134983 80336 Hs.641481 NM_001124756 ENSG00000101104 PABPC1L C20orf119|EPAB|PABPC1L1|dJ1069P2.3 poly(A) binding protein cytoplasmic 1 like protein-coding 126.833-34 chr17 60071454 60071596 + 1 NA intron (NM_022070, intron 5 of 19) MIRb|SINE|MIR 7406 NM_022070 63897 Hs.221899 NM_022070 ENSG00000068097 HEATR6 ABC1 HEAT repeat containing 6 protein-coding 123.333-107 chr8 81253901 81254074 + 1 NA Intergenic Intergenic -26549 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 185.333-4 chr1 237698282 237698558 + 1 NA intron (NM_001035, intron 63 of 104) intron (NM_001035, intron 63 of 104) -163755 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 134.5-65 chr6 93304742 93304911 + 1 NA intron (NM_004440, intron 5 of 16) L2a|LINE|L2 114733 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 183.5-59 chr8 138744807 138745050 + 1 NA intron (NM_152888, intron 22 of 64) intron (NM_152888, intron 22 of 64) 169113 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 152.5-67 chr8 72464653 72465105 + 1 NA Intergenic L1MEc|LINE|L1 -72346 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 212.667-7 chr1 234782329 234782678 + 1 NA Intergenic Intergenic -22447 NR_148962 100130249 Hs.617350 NR_148962 ENSG00000279261 PP2672 - uncharacterized LOC100130249 ncRNA 244.833-10 chr20 55690356 55690879 + 1 NA Intergenic Intergenic -263420 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 309.5-6 chr5 83227723 83228206 + 1 NA intron (NM_001318012, intron 6 of 7) intron (NM_001318012, intron 6 of 7) 150417 NM_001318012 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 175.833-6 chr10 80584278 80584672 + 1 NA intron (NM_207372, intron 3 of 6) intron (NM_207372, intron 3 of 6) 43656 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 225.833-22 chr9 76973710 76974012 + 1 NA Intergenic Intergenic -45794 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 317.5-3 chr13 55783162 55783602 + 1 NA Intergenic Intergenic 608928 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 146.167-80 chrX 98313167 98313508 + 1 NA Intergenic L2c|LINE|L2 -748802 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 212.167-3 chr1 208724196 208724451 + 1 NA Intergenic Intergenic -4365 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 170.5-39 chr20 10221675 10221927 + 1 NA intron (NM_001322902, intron 1 of 7) intron (NM_001322902, intron 1 of 7) -2295 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 268.667-5 chr18 51045652 51045944 + 1 NA intron (NM_005359, intron 1 of 11) L1MB7|LINE|L1 15585 NM_005359 4089 Hs.75862 NM_005359 ENSG00000141646 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding 250.5-12 chr2 132653718 132654014 + 1 NA intron (NM_144586, intron 2 of 2) L1MC4a|LINE|L1 16339 NM_001321234 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 179.667-9 chr11 84623740 84624066 + 1 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 97039 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 136.667-9 chr10 50937614 50938014 + 1 NA Intergenic Intergenic -52139 NM_001198818 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 141.667-7 chr10 59574264 59574450 + 1 NA Intergenic L1MEc|LINE|L1 135534 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 154.667-63 chr7 3764763 3764966 + 1 NA intron (NM_152744, intron 4 of 44) Charlie1a|DNA|hAT-Charlie -364821 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 296.833-5 chr3 90089363 90090075 + 1 NA Intergenic Intergenic 982098 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 198.5-21 chr2 47499823 47500390 + 1 NA Intergenic LOR1a|LTR|ERV1 -27431 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 127.333-52 chr2 104375202 104375455 + 1 NA Intergenic Intergenic 33004 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 230.667-17 chr3 34336708 34337216 + 1 NA Intergenic Intergenic 538332 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 297.5-12 chr5 28303755 28304358 + 1 NA Intergenic Intergenic -16391 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 240.333-31 chr8 89057111 89057443 + 1 NA Intergenic Intergenic 700434 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 115.333-23 chr13 40016890 40017061 + 1 NA Intergenic Intergenic -164834 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 285.333-18 chr9 99342490 99342922 + 1 NA Intergenic Intergenic 32551 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 226.333-11 chr15 95698918 95699218 + 1 NA Intergenic Intergenic 265975 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 142.333-32 chr14 49551916 49552208 + 1 NA Intergenic Intergenic 34318 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 202.333-9 chr12 1521321 1521632 + 1 NA Intergenic Intergenic 10716 NR_160736 107984507 NR_160736 LOC107984507 - uncharacterized LOC107984507 ncRNA 161.5-22 chr19 49845581 49846066 + 1 NA intron (NR_040037, intron 2 of 3) intron (NR_040037, intron 2 of 3) -4882 NM_001364747 53635 Hs.587979 NM_017432 ENSG00000104960 PTOV1 ACID2|PTOV-1 PTOV1 extended AT-hook containing adaptor protein protein-coding 525.833 chr8 129226053 129226927 + 1 NA intron (NR_033916, intron 1 of 2) L3|LINE|CR1 14750 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 162.333-14 chr12 58450671 58451134 + 1 NA Intergenic Intergenic -140800 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 251.167-13 chr4 136524700 136525136 + 1 NA Intergenic LTR16|LTR|ERVL -611238 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 213.833-26 chr3 129568831 129569166 + 1 NA intron (NM_015103, intron 20 of 35) L1MB8|LINE|L1 20613 NM_001308262 132243 Hs.97358 NM_153833 ENSG00000178804 H1FOO H1.8|H1oo|osH1 H1 histone family member O oocyte specific protein-coding 144.333-67 chr5 9851413 9851727 + 1 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -2807 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 180.167-31 chr21 21582661 21582934 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 154522 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 312.333-5 chr16 46778926 46779311 + 1 NA Intergenic MER52C|LTR|ERV1 -15872 NM_001308301 91807 Hs.130465 NM_182493 ENSG00000140795 MYLK3 MLCK|MLCK2|caMLCK myosin light chain kinase 3 protein-coding 119.667-102 chr8 131696147 131696281 + 1 NA Intergenic Intergenic -207879 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 177.5-52 chr3 77250261 77250480 + 1 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 152358 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 307.667-6 chr17 62720437 62720774 + 1 NA intron (NM_001288780, intron 9 of 10) L1MCa|LINE|L1 14399 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 152.667-73 chr5 148405886 148406114 + 1 NA intron (NM_001271723, intron 6 of 20) intron (NM_001271723, intron 6 of 20) 22042 NM_205836 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 170.667-43 chr4 14388615 14388848 + 1 NA Intergenic Intergenic 276763 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 227.667-27 chr7 137061342 137061599 + 1 NA intron (NR_046103, intron 1 of 3) intron (NR_046103, intron 1 of 3) 102871 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 194.667-24 chr2 45141660 45142140 + 1 NA Intergenic Intergenic 113041 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 172.167-8 chr10 61641040 61641414 + 1 NA Intergenic Intergenic -21702 NM_001366905 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 177.667-37 chr2 101065544 101065741 + 1 NA intron (NM_001102426, intron 2 of 19) intron (NM_001102426, intron 2 of 19) 63353 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 150.5-29 chr15 71036916 71037162 + 1 NA intron (NM_017691, intron 14 of 15) intron (NM_017691, intron 14 of 15) -104410 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 261.5-19 chr8 99736222 99736697 + 1 NA intron (NM_017890, intron 39 of 61) AluSz|SINE|Alu 157248 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 176.167-50 chrX 112335190 112335596 + 1 NA intron (NM_001004308, intron 2 of 2) intron (NM_001004308, intron 2 of 2) 252368 NM_001004308 340595 Hs.368140 NM_001004308 ENSG00000187823 RTL4 Mar4|Mart4|SIRH11|ZCCHC16 retrotransposon Gag like 4 protein-coding 179.5-37 chr8 22776353 22776639 + 1 NA intron (NM_001363233, intron 4 of 6) intron (NM_001363233, intron 4 of 6) -83016 NM_004430 1960 Hs.534313 NM_004430 ENSG00000179388 EGR3 EGR-3|PILOT early growth response 3 protein-coding 258.167-8 chr18 13396181 13396684 + 1 NA intron (NM_181482, intron 3 of 5) MER2|DNA|TcMar-Tigger 31102 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 142.833-67 chr6 138569667 138569952 + 1 NA intron (NM_020464, intron 1 of 6) intron (NM_020464, intron 1 of 6) 2760 NM_020464 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 240.333-10 chr14 28379673 28380045 + 1 NA Intergenic L1MA10|LINE|L1 385460 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 139.833-24 chr14 67263976 67264339 + 1 NA intron (NM_001256550, intron 1 of 14) intron (NM_001256550, intron 1 of 14) 22722 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 142.667-10 chr10 76717311 76717568 + 1 NA Intergenic MIR|SINE|MIR -170605 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 127.5-34 chr2 40931535 40932044 + 1 NA Intergenic L2a|LINE|L2 -419354 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 179.333-54 chr8 8433397 8433597 + 1 NA Intergenic Intergenic -47058 NR_163138 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 217.333-2 chr10 33676173 33676472 + 1 NA Intergenic MER1A|DNA|hAT-Charlie 96358 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 165.5-17 chr13 92037872 92038106 + 1 NA intron (NM_004466, intron 6 of 7) L2|LINE|L2 314218 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 375.667-3 chr15 80969572 80970037 + 1 NA intron (NR_126328, intron 1 of 2) AluSx1|SINE|Alu 20015 NR_126327 23184 Hs.578450 NM_015154 ENSG00000117899 MESD BOCA|MESDC2 mesoderm development LRP chaperone protein-coding 195.333-17 chr19 34603525 34603740 + 1 NA intron (NR_027620, intron 1 of 3) intron (NR_027620, intron 1 of 3) -9047 NM_001025591 284402 Hs.656990 NM_001025591 ENSG00000205209 SCGB2B2 SCGB4A2|SCGBL secretoglobin family 2B member 2 protein-coding 196.667-55 chr8 81395755 81396035 + 1 NA Intergenic L1M3c|LINE|L1 51544 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 150.667-15 chr11 32269076 32269241 + 1 NA Intergenic (AAGA)n|Simple_repeat|Simple_repeat -125246 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 135.333-53 chr3 188921855 188921995 + 1 NA Intergenic Intergenic 25714 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 234.333-31 chr6 62183492 62183740 + 1 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 102609 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 242.167-2 chr1 46009419 46009810 + 1 NA intron (NM_001324320, intron 10 of 29) intron (NM_001324320, intron 10 of 29) 121059 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 218.333-33 chr8 89527253 89527475 + 1 NA Intergenic MamTip1|DNA|hAT-Tip100 230347 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 155.667-79 chr8 50183023 50183264 + 1 NA intron (NR_135797, intron 2 of 20) L2|LINE|L2 19012 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 174.667-63 chr7 108572252 108572537 + 1 NA intron (NM_012328, intron 2 of 2) intron (NM_012328, intron 2 of 2) 2520 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 184.333-38 chr3 80514397 80514805 + 1 NA Intergenic L2a|LINE|L2 -250296 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 243.5-32 chr9 73256566 73257214 + 1 NA Intergenic L1MD1|LINE|L1 105025 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 174.5-35 chr5 33683326 33683527 + 1 NA intron (NM_001324512, intron 4 of 21) intron (NM_001324512, intron 4 of 21) 208564 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 161.667-13 chr1 241806147 241806385 + 1 NA Intergenic L1MC1|LINE|L1 -41925 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 207.333-40 chr5 81663266 81663599 + 1 NA intron (NM_012446, intron 1 of 16) intron (NM_012446, intron 1 of 16) 87821 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 119.5-10 chr1 197702042 197702242 + 1 NA intron (NR_125340, intron 3 of 19) MER92-int|LTR|ERV1 73338 NM_001300858 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 172.667-15 chr11 20066490 20066785 + 1 NA intron (NM_182964, intron 20 of 37) intron (NM_182964, intron 20 of 37) -17334 NR_046672 100874014 Hs.557916 NR_046672 ENSG00000254453 NAV2-AS2 - NAV2 antisense RNA 2 ncRNA 126.333-50 chr18 7348553 7348728 + 1 NA Intergenic Intergenic 112366 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 136.667-43 chr2 107247169 107247319 + 1 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 102281 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 173.667-46 chr4 88840142 88840529 + 1 NA intron (NM_014883, intron 7 of 23) L2|LINE|L2 -16974 NM_001265579 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 166.667-26 chr2 187568752 187569091 + 1 NA Intergenic Intergenic -14416 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 130.667-38 chr2 48623000 48623203 + 1 NA intron (NM_001198594, intron 4 of 7) intron (NM_001198594, intron 4 of 7) 5245 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 144.333-36 chr15 97936895 97937080 + 1 NA Intergenic Intergenic -23716 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 136.167-73 chr7 117395526 117395806 + 1 NA intron (NM_001301821, intron 4 of 12) intron (NM_001301821, intron 4 of 12) 31827 NM_130768 136991 Hs.352412 NM_130768 ENSG00000154438 ASZ1 ALP1|ANKL1|C7orf7|CT1.19|GASZ|Orf3 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding 136.333-64 chr3 149031643 149031783 + 1 NA 3' UTR (NM_003071, exon 25 of 25) 3' UTR (NM_003071, exon 25 of 25) 40305 NM_004130 2992 Hs.477892 NM_004130 ENSG00000163754 GYG1 GSD15|GYG glycogenin 1 protein-coding 169.667-66 chr7 2967404 2967636 + 1 NA intron (NM_032415, intron 1 of 24) intron (NM_032415, intron 1 of 24) 76347 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 323.333-7 chr3 172204027 172204512 + 1 NA intron (NM_001135095, intron 3 of 25) intron (NM_001135095, intron 3 of 25) 163738 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 176.333-64 chr9 29619097 29619471 + 1 NA Intergenic Intergenic -405683 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 239.5-29 chrX 78386315 78386577 + 1 NA Intergenic L1MA2|LINE|L1 -58755 NM_001282186 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 127.667-78 chr6 34751901 34752122 + 1 NA Intergenic HSATI|Satellite|Satellite -5083 NR_029472 6631 Hs.1063 NM_003093 ENSG00000124562 SNRPC U1C|Yhc1 small nuclear ribonucleoprotein polypeptide C protein-coding 206.333 chr10 26761584 26761901 + 1 NA intron (NM_001012752, intron 6 of 9) L1ME3E|LINE|L1 64041 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 258.333-14 chr14 84574560 84575092 + 1 NA Intergenic Intergenic -697106 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 154.833-39 chr21 31652390 31652614 + 1 NA Intergenic L1MB7|LINE|L1 -7120 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 135.667-24 chr11 104713700 104713957 + 1 NA Intergenic L1PA16|LINE|L1 -104526 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 208.833-22 chr3 41790947 41791449 + 1 NA intron (NR_136342, intron 19 of 34) Alu|SINE|Alu 170905 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 342.5-3 chr10 105784265 105784929 + 1 NA intron (NR_120625, intron 3 of 3) intron (NR_120625, intron 3 of 3) 35736 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 237.833-18 chr7 117477386 117477921 + 1 NA Intergenic Intergenic -2310 NM_000492 1080 Hs.489786 NM_000492 ENSG00000001626 CFTR ABC35|ABCC7|CF|CFTR/MRP|MRP7|TNR-CFTR|dJ760C5.1 CF transmembrane conductance regulator protein-coding 152.5-19 chr17 10461519 10461697 + 1 NA intron (NM_017533, intron 11 of 39) intron (NM_017533, intron 11 of 39) 7951 NM_017533 4622 Hs.711141 NM_017533 ENSG00000264424 MYH4 MYH2B|MyHC-2B|MyHC-IIb myosin heavy chain 4 protein-coding 161.667-38 chr18 2129424 2129635 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR 441976 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 249.667-18 chr2 34169326 34169869 + 1 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 102371 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 174.667-14 chr12 65384230 65384578 + 1 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 105417 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 225.167-17 chr20 52704159 52704672 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 83577 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 243.667-30 chr5 59187240 59187561 + 1 NA intron (NM_006203, intron 3 of 14) L1ME3E|LINE|L1 88715 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 163.333-57 chr4 61082968 61083178 + 1 NA Intergenic MIRb|SINE|MIR -60583 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 287.5-17 chr8 99925153 99925621 + 1 NA Intergenic L1PB4|LINE|L1 -31680 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 235.5-18 chr2 77448602 77448872 + 1 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 73639 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 304.5-11 chr7 93740203 93740700 + 1 NA Intergenic L1MC3|LINE|L1 23523 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 214.667-33 chr6 163728806 163729360 + 1 NA Intergenic Intergenic -57599 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 132.667-88 chr7 31993821 31993974 + 1 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 76510 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 126.333-33 chr14 74536893 74537095 + 1 NA intron (NM_000428, intron 8 of 35) intron (NM_000428, intron 8 of 35) 43229 NM_194279 122961 Hs.291079 NM_194279 ENSG00000165898 ISCA2 HBLD1|ISA2|MMDS4|c14_5557 iron-sulfur cluster assembly 2 protein-coding 187.667-39 chr5 35491737 35492032 + 1 NA Intergenic Intergenic -125979 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 217.5-23 chr2 54151220 54151624 + 1 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 28139 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 192.5-52 chr8 89094806 89095113 + 1 NA Intergenic Intergenic 662752 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 175.333-22 chr17 69329637 69329908 + 1 NA Intergenic Intergenic -2639 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 304.167-4 chr15 97143293 97143923 + 1 NA Intergenic Intergenic 360173 NR_158223 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 323.667-11 chr7 44697391 44697888 + 1 NA exon (NM_001165036, exon 17 of 23) exon (NM_001165036, exon 17 of 23) -50927 NM_001300959 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 159.5-41 chr5 33646654 33646960 + 1 NA intron (NM_001324512, intron 9 of 21) L1MEd|LINE|L1 206031 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 129.667-69 chr3 146674615 146674925 + 1 NA Intergenic L1ME3|LINE|L1 -68554 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 169.5-70 chr8 9956966 9957221 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -53621 NR_029668 406907 NR_029668 ENSG00000284321 MIR124-1 MIR124A|MIR124A1|MIRN124-1|MIRN124A1|mir-124-1 microRNA 124-1 ncRNA 185.667-42 chr5 93508425 93508777 + 1 NA intron (NR_109825, intron 5 of 8) L1MEd|LINE|L1 62742 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 130.167-46 chr3 49215325 49215504 + 1 NA intron (NM_001135197, intron 2 of 7) intron (NM_001135197, intron 2 of 7) 15916 NM_001135197 339834 Hs.631931 NM_178173 ENSG00000173421 CCDC36 CT74 coiled-coil domain containing 36 protein-coding 174.333-7 chr11 15770152 15770354 + 1 NA Intergenic Intergenic 126368 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 230.333-15 chr20 45459174 45459518 + 1 NA Intergenic L1ME3E|LINE|L1 -10407 NM_006103 10406 Hs.2719 NM_006103 ENSG00000101443 WFDC2 EDDM4|HE4|WAP5|dJ461P17.6 WAP four-disulfide core domain 2 protein-coding 124.667-31 chr14 55968497 55968798 + 1 NA Intergenic Intergenic -149764 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 222.667-36 chr8 74802135 74802490 + 1 NA Intergenic Intergenic -22222 NM_015886 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 296.5-9 chr6 71411230 71412036 + 1 NA non-coding (NR_121614, exon 3 of 3) non-coding (NR_121614, exon 3 of 3) -8012 NR_029504 407029 NR_029504 ENSG00000207827 MIR30A MIRN30A|mir-30a microRNA 30a ncRNA 193.667-41 chr5 78645274 78645514 + 1 NA intron (NM_005779, intron 1 of 4) intron (NM_005779, intron 1 of 4) 3378 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 178.667-26 chr2 48276725 48277156 + 1 NA Intergenic HAL1M8|LINE|L1 -37742 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 185.667-26 chr2 58356507 58356831 + 1 NA Intergenic L1MA10|LINE|L1 80792 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 259.833-10 chr5 126518800 126519090 + 1 NA Intergenic AluSx1|SINE|Alu 53795 NM_001146322 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 239.333-7 chr13 86861721 86862180 + 1 NA Intergenic THE1C-int|LTR|ERVL-MaLR -49970 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 243.333-16 chr3 129885630 129885925 + 1 NA intron (NM_001349271, intron 1 of 4) AluSc|SINE|Alu 7799 NM_001128224 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 158.333-66 chr7 117750762 117751054 + 1 NA intron (NM_001363351, intron 12 of 22) intron (NM_001363351, intron 12 of 22) 121312 NM_001363350 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 151.667-17 chr12 55852995 55853282 + 1 NA Intergenic L1MC1|LINE|L1 -10202 NM_002429 4327 Hs.591033 NM_002429 ENSG00000123342 MMP19 CODA|MMP18|RASI-1 matrix metallopeptidase 19 protein-coding 251.167-11 chr3 123573876 123574473 + 1 NA intron (NM_001329784, intron 2 of 8) intron (NM_001329784, intron 2 of 8) 10443 NM_001329787 201562 Hs.705480 NM_198402 ENSG00000206527 HACD2 PTPLB 3-hydroxyacyl-CoA dehydratase 2 protein-coding 327.667-12 chr7 27900695 27901076 + 1 NA intron (NM_175061, intron 2 of 4) L1ME3E|LINE|L1 160790 NM_001079864 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 269.667-14 chr2 119998640 119999249 + 1 NA Intergenic L1M5|LINE|L1 -14133 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 128.833-89 chr9 37641215 37641504 + 1 NA intron (NM_001371224, intron 2 of 16) MIRb|SINE|MIR -9595 NM_014907 22844 Hs.163990 NM_014907 ENSG00000070601 FRMPD1 FRMD2 FERM and PDZ domain containing 1 protein-coding 271.5-11 chr17 74640748 74641108 + 1 NA Intergenic Intergenic -17190 NM_181449 342510 Hs.158954 NM_181449 ENSG00000186407 CD300E CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2 CD300e molecule protein-coding 176.833-38 chr9 128429664 128430101 + 1 NA intron (NM_001286760, intron 8 of 12) AluSz|SINE|Alu 9025 NM_016174 51148 Hs.495230 NM_016174 ENSG00000167123 CERCAM CEECAM1|GLT25D3 cerebral endothelial cell adhesion molecule protein-coding 300.667-10 chr4 73394169 73394754 + 1 NA Intergenic Intergenic -9826 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 120.333-65 chr20 63890890 63891108 + 1 NA non-coding (NR_045090, exon 7 of 7) non-coding (NR_045090, exon 7 of 7) -4127 NM_025219 80331 Hs.164419 NM_025219 ENSG00000101152 DNAJC5 CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5 DnaJ heat shock protein family (Hsp40) member C5 protein-coding 355.667-4 chr2 139845929 139846409 + 1 NA Intergenic Intergenic 740516 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 254.333-12 chr3 82909578 82909930 + 1 NA Intergenic Intergenic 923612 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 289.167-9 chr15 34871992 34872454 + 1 NA intron (NM_014691, intron 30 of 34) MARNA|DNA|TcMar-Mariner -76674 NM_005159 70 Hs.118127 NM_005159 ENSG00000159251 ACTC1 ACTC|ASD5|CMD1R|CMH11|LVNC4 actin alpha cardiac muscle 1 protein-coding 205.667-52 chr6 141143032 141143439 + 1 NA Intergenic L1PB2|LINE|L1 459421 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 336.333-5 chr3 192208178 192208572 + 1 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) -30255 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 176.667-77 chr8 119556661 119556972 + 1 NA TTS (NR_045555) TTS (NR_045555) 36192 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 236.667-8 chr12 70764250 70764809 + 1 NA intron (NM_001207015, intron 2 of 12) MER58A|DNA|hAT-Charlie -9770 NM_001207016 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 243.333-8 chr14 82017496 82017767 + 1 NA Intergenic L1ME4a|LINE|L1 -274493 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 148.667-85 chr9 72861453 72861734 + 1 NA Intergenic L1PB2|LINE|L1 12516 NR_121181 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 183.5-32 chr2 54910669 54910949 + 1 NA intron (NM_001039753, intron 23 of 40) intron (NM_001039753, intron 23 of 40) 99463 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 121.5-35 chr14 51478064 51478293 + 1 NA intron (NR_051990, intron 2 of 2) intron (NR_051990, intron 2 of 2) -10950 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 238.167-29 chr9 33851576 33851935 + 1 NA intron (NM_017811, intron 1 of 4) L1MC4|LINE|L1 34595 NM_017811 54926 Hs.643648 NM_017811 ENSG00000107341 UBE2R2 CDC34B|E2-CDC34B|UBC3B ubiquitin conjugating enzyme E2 R2 protein-coding 193.167-35 chr7 130164212 130164588 + 1 NA TTS (NM_032842) TTS (NM_032842) 22669 NR_149034 100128325 Hs.105944 NR_149033 ENSG00000229196 LOC100128325 - uncharacterized LOC100128325 ncRNA 284.667-10 chr3 89977760 89978155 + 1 NA Intergenic MIRc|SINE|MIR 870336 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 275.667-12 chr17 32701036 32701427 + 1 NA intron (NM_015194, intron 16 of 21) L1M5|LINE|L1 175893 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 133.167-33 chr2 187845085 187845461 + 1 NA Intergenic Intergenic -290768 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 185.833-33 chr6 162487284 162487508 + 1 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -239736 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 200.167-18 chr16 6325427 6325952 + 1 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 305986 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 233.667-2 chr10 55835029 55835531 + 1 NA Intergenic L1ME4a|LINE|L1 -207338 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 117.167-65 chr3 105421336 105421478 + 1 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 54498 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 180.667-27 chr15 52262044 52262271 + 1 NA intron (NM_018728, intron 9 of 40) intron (NM_018728, intron 9 of 40) 15043 NR_031670 100302202 NR_031670 ENSG00000221052 MIR1266 MIRN1266|hsa-mir-1266|mir-1266 microRNA 1266 ncRNA 146.333-95 chr8 63156937 63157120 + 1 NA Intergenic L1MD3|LINE|L1 11414 NR_102684 101410533 Hs.163027 NR_102684 ENSG00000270673 YTHDF3-AS1 - YTHDF3 antisense RNA 1 (head to head) ncRNA 251.667-12 chr3 69580888 69581248 + 1 NA Intergenic Intergenic -158396 NM_001354605 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 199.167-17 chr2 29457897 29458221 + 1 NA intron (NM_004304, intron 4 of 28) intron (NM_004304, intron 4 of 28) 17318 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 150.333-85 chr5 54615910 54616109 + 1 NA Intergenic LTR82A|LTR|ERVL 87315 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 114.333-24 chr12 24550164 24550320 + 1 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 12249 NM_001261414 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 153.667-88 chrX 121360363 121360595 + 1 NA Intergenic L1PA13|LINE|L1 -10493 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 266.5-10 chr21 21281985 21282391 + 1 NA intron (NM_001352592, intron 3 of 18) intron (NM_001352592, intron 3 of 18) 135026 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 197.333 chr1 110942043 110942299 + 1 NA Intergenic L1PA6|LINE|L1 21751 NM_018372 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 248.667-17 chr20 60523780 60524105 + 1 NA Intergenic L2a|LINE|L2 -40620 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 219.667-35 chrX 63931734 63932043 + 1 NA Intergenic Intergenic -145801 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 195.667-46 chr8 129930727 129931060 + 1 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) 8918 NM_001353313 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 238.667-37 chrX 131214196 131214507 + 1 NA Intergenic Tigger15a|DNA|TcMar-Tigger 74710 NM_001170963 3547 Hs.22111 NM_001555 ENSG00000147255 IGSF1 CHTE|IGCD1|IGDC1|INHBP|PGSF2|p120 immunoglobulin superfamily member 1 protein-coding 204.833-23 chr5 31534503 31534735 + 1 NA intron (NR_134298, intron 2 of 8) MER58A|DNA|hAT-Charlie 2318 NM_018356 55322 Hs.519246 NM_018356 ENSG00000082213 C5orf22 - chromosome 5 open reading frame 22 protein-coding 153.667-42 chr2 169531571 169531784 + 1 NA intron (NR_104020, intron 11 of 13) intron (NR_104020, intron 11 of 13) 21975 NM_006063 10324 Hs.50550 NM_006063 ENSG00000239474 KLHL41 KBTBD10|Krp1|SARCOSIN kelch like family member 41 protein-coding 261.667 chr1 182714286 182714805 + 1 NA TTS (NR_146548) TTS (NR_146548) 1683 NR_146548 105371644 Hs.496952 NR_146548 ENSG00000227181 LINC01688 - long intergenic non-protein coding RNA 1688 ncRNA 257.833-14 chr9 29500694 29501021 + 1 NA Intergenic Intergenic -287256 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 201.167-33 chr8 46910565 46910900 + 1 NA Intergenic L1ME3Cz|LINE|L1 69846 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 252.333-16 chr3 126027645 126028030 + 1 NA intron (NM_001164475, intron 3 of 9) MSTA-int|LTR|ERVL-MaLR 28938 NM_001008487 54946 Hs.573007 NM_017836 ENSG00000114544 SLC41A3 SLC41A1-L2 solute carrier family 41 member 3 protein-coding 164.333-71 chr6 72384856 72385130 + 1 NA intron (NM_001168411, intron 1 of 5) intron (NM_001168411, intron 1 of 5) 18247 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 214.5-6 chr11 97798923 97799475 + 1 NA Intergenic Intergenic -1221750 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 118.667-86 chr4 63498124 63498319 + 1 NA Intergenic L1MA3|LINE|L1 911229 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 148.333-70 chr3 134461389 134461656 + 1 NA Intergenic Intergenic 23695 NR_039951 100616281 NR_039951 ENSG00000284561 MIR4788 - microRNA 4788 ncRNA 190.5-17 chr14 61401832 61402085 + 1 NA intron (NM_006255, intron 2 of 13) Charlie1a|DNA|hAT-Charlie 80515 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 220.5-7 chr10 76996734 76997056 + 1 NA intron (NM_001322838, intron 19 of 29) intron (NM_001322838, intron 19 of 29) 108851 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 172.333-15 chr11 40169591 40169835 + 1 NA intron (NM_020929, intron 3 of 4) intron (NM_020929, intron 3 of 4) 123417 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 170.833-36 chr5 1675128 1675547 + 1 NA Intergenic L1MEf|LINE|L1 33531 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 196.333-17 chr2 19073032 19073385 + 1 NA Intergenic Intergenic -46237 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 216.333-43 chr6 99336348 99336587 + 1 NA intron (NR_144463, intron 3 of 5) intron (NR_144463, intron 3 of 5) 13207 NM_032511 84553 Hs.573245 NM_032511 ENSG00000146267 FAXC C6orf168|dJ273F20 failed axon connections homolog, metaxin like GST domain containing protein-coding 241.5-26 chr8 89019343 89019679 + 1 NA Intergenic AluJr4|SINE|Alu -692028 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 114.333-71 chr2 135425082 135425289 + 1 NA intron (NM_001286569, intron 2 of 21) HAL1|LINE|L1 105400 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 335.5-3 chr6 73479631 73480300 + 1 NA exon (NM_012123, exon 6 of 12) exon (NM_012123, exon 6 of 12) 18228 NM_012123 25821 Hs.347614 NM_012123 ENSG00000135297 MTO1 CGI-02|COXPD10 mitochondrial tRNA translation optimization 1 protein-coding 130.667-2 chr1 57400000 57400233 + 1 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) 22996 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 201.833-8 chr16 63867404 63867668 + 1 NA Intergenic L1MC3|LINE|L1 1254527 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 322.167-3 chr14 56400027 56400803 + 1 NA Intergenic Intergenic -113916 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 207.667-35 chr4 94492086 94492348 + 1 NA intron (NM_001256428, intron 2 of 11) intron (NM_001256428, intron 2 of 11) 40275 NM_006457 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 185.667-39 chr5 15565605 15566018 + 1 NA intron (NM_001278317, intron 1 of 3) MLT2B4|LTR|ERVL 49191 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 277.333-15 chr6 52182122 52182533 + 1 NA Intergenic Intergenic -4048 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 139.667-9 chr1 172552302 172552567 + 1 NA intron (NM_001282750, intron 2 of 22) intron (NM_001282750, intron 2 of 22) 19284 NM_014283 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 143.667-91 chr5 134719004 134719216 + 1 NA intron (NM_021982, intron 20 of 22) AluSz|SINE|Alu -19438 NM_001745 819 Hs.529846 NM_001745 ENSG00000164615 CAMLG CAML|GET2 calcium modulating ligand protein-coding 200.333-13 chr16 48947209 48947819 + 1 NA Intergenic MER117|DNA|hAT-Charlie 334324 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 163.5-46 chr3 48828324 48828553 + 1 NA intron (NM_001321982, intron 1 of 11) Tigger3b|DNA|TcMar-Tigger 19436 NM_001321982 5576 Hs.631923 NM_004157 ENSG00000114302 PRKAR2A PKR2|PRKAR2 protein kinase cAMP-dependent type II regulatory subunit alpha protein-coding 210.667-41 chr4 57763646 57764231 + 1 NA Intergenic MIRc|SINE|MIR 338066 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 189.333-54 chr8 87901988 87902214 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -28086 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 196.667-6 chr10 73523491 73524046 + 1 NA intron (NR_146997, intron 16 of 21) intron (NR_146997, intron 16 of 21) -27744 NM_001142353 5532 Hs.500067 NM_021132 ENSG00000107758 PPP3CB CALNA2|CALNB|CNA2|PP2Bbeta protein phosphatase 3 catalytic subunit beta protein-coding 195.5-12 chr12 34499534 34499835 + 1 NA Intergenic ALR/Alpha|Satellite|centr 477188 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 353.167-3 chr12 74872075 74872482 + 1 NA Intergenic Intergenic 334443 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 169.333-26 chr15 37029381 37029689 + 1 NA intron (NM_172316, intron 8 of 12) intron (NM_172316, intron 8 of 12) -56634 NR_107030 102466875 NR_107030 ENSG00000277202 MIR8063 hsa-mir-8063 microRNA 8063 ncRNA 122.333-101 chr7 35774387 35774524 + 1 NA intron (NR_120511, intron 3 of 5) L1MC3|LINE|L1 26170 NR_120511 101928545 Hs.648103 NR_120511 SEPTIN7-AS1 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) ncRNA 181.5-7 chr10 110598135 110598436 + 1 NA exon (NM_005445, exon 20 of 29) exon (NM_005445, exon 20 of 29) 30594 NM_005445 9126 Hs.24485 NM_005445 ENSG00000108055 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 215.167-16 chr3 4486363 4486665 + 1 NA Intergenic AluSz|SINE|Alu 6649 NR_108075 100996539 Hs.190365 NR_108075 ITPR1-DT ITPR1-AS1 ITPR1 divergent transcript ncRNA 214.333-19 chr15 59507506 59507786 + 1 NA intron (NM_152450, intron 5 of 8) intron (NM_152450, intron 5 of 8) 69460 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 178.833-11 chr14 63834463 63834723 + 1 NA Intergenic AluJr|SINE|Alu -18372 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 171.833-20 chr17 69442590 69442989 + 1 NA intron (NM_002758, intron 1 of 11) MIR|SINE|MIR 28092 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 234.333-26 chr4 113797483 113797874 + 1 NA Intergenic L1MA4|LINE|L1 -35751 NM_172127 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 221.5-41 chr9 74301438 74301723 + 1 NA Intergenic L1ME2z|LINE|L1 -69951 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 296.333-9 chr3 105166240 105166714 + 1 NA Intergenic Intergenic -200236 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 153.5-52 chr5 25325186 25325435 + 1 NA Intergenic Intergenic 134357 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 271.5-8 chr17 55229771 55230226 + 1 NA Intergenic L2a|LINE|L2 -34962 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 191.667-8 chr10 81885157 81885562 + 1 NA intron (NR_163252, intron 1 of 8) MamRep1527|LTR|LTR 7672 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 222.167-34 chr7 42128509 42128880 + 1 NA intron (NM_000168, intron 3 of 14) intron (NM_000168, intron 3 of 14) 108515 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 203.667-22 chr20 45201756 45202015 + 1 NA Intergenic L1M1|LINE|L1 -5148 NM_003007 6406 Hs.1968 NM_003007 ENSG00000124233 SEMG1 CT103|SEMG|SGI|dJ172H20.2 semenogelin 1 protein-coding 154.167-11 chr11 94201604 94201950 + 1 NA Intergenic Intergenic 72936 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 216.333-22 chr2 110762605 110762932 + 1 NA intron (NM_001371254, intron 1 of 18) AluJb|SINE|Alu 30195 NM_001371254 154.833-7 chr10 19072455 19072709 + 1 NA intron (NM_001142308, intron 2 of 39) intron (NM_001142308, intron 2 of 39) 23781 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 292.667-4 chr15 58878806 58879135 + 1 NA TTS (NR_135043) TTS (NR_135043) 54709 NR_135043 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 237.667-16 chr6 157669325 157669738 + 1 NA intron (NM_153746, intron 8 of 8) intron (NM_153746, intron 8 of 8) 140399 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 220.667-13 chr18 11495774 11496140 + 1 NA intron (NR_110778, intron 1 of 2) intron (NR_110778, intron 1 of 2) 5909 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 215.667-37 chr4 153517892 153518249 + 1 NA intron (NM_001131007, intron 3 of 34) intron (NM_001131007, intron 3 of 34) 51710 NM_001131007 23240 Hs.732450 NM_015196 ENSG00000121210 TMEM131L KIAA0922 transmembrane 131 like protein-coding 248.5-13 chr3 105638952 105639387 + 1 NA Intergenic L1MEc|LINE|L1 228422 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 115.667-97 chr5 75990488 75990698 + 1 NA Intergenic MER76|LTR|ERVL -92790 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 155.333-89 chr7 27953538 27953754 + 1 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) 213551 NM_001079864 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 385.167-5 chr5 113333781 113334354 + 1 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) -39129 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 250.5-14 chr2 170938643 170939064 + 1 NA intron (NM_015530, intron 1 of 9) AluSq|SINE|Alu 9600 NM_015530 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 280.5-12 chr8 91163794 91164330 + 1 NA intron (NR_148895, intron 7 of 10) intron (NR_148895, intron 7 of 10) -41423 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 186.667-64 chr4 172841058 172841311 + 1 NA intron (NM_001034845, intron 7 of 12) intron (NM_001034845, intron 7 of 12) -114306 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 169.5-22 chr15 35945200 35945486 + 1 NA Intergenic Intergenic 18487 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 265.167-4 chr11 28004104 28004549 + 1 NA Intergenic MER65-int|LTR|ERV1 -52489 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 123.333-52 chr2 85085182 85085340 + 1 NA Intergenic L1MEd|LINE|L1 -17914 NR_146453 100996478 Hs.434398 NR_146453 ENSG00000260840 LINC01964 - long intergenic non-protein coding RNA 1964 ncRNA 146.333-89 chr7 4324444 4324692 + 1 NA Intergenic L1MB7|LINE|L1 -189731 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 319.667-5 chr15 57076494 57076840 + 1 NA intron (NM_001322158, intron 5 of 20) intron (NM_001322158, intron 5 of 20) -142763 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 230.667-13 chr2 160973370 160973713 + 1 NA Intergenic Intergenic -163414 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 125.333-2 chr1 70266256 70266451 + 1 NA intron (NM_030816, intron 12 of 12) L1MD1|LINE|L1 44973 NM_001350616 9295 Hs.479693 NM_004768 ENSG00000116754 SRSF11 NET2|SFRS11|dJ677H15.2|p54 serine and arginine rich splicing factor 11 protein-coding 169.667-59 chr5 82045932 82046147 + 1 NA intron (NM_031482, intron 2 of 7) intron (NM_031482, intron 2 of 7) 74016 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 115.5-75 chr4 85597364 85597616 + 1 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) 122340 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 160.667-24 chr14 42639685 42639890 + 1 NA Intergenic L1M5|LINE|L1 1032931 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 267.833-19 chr9 39016874 39017388 + 1 NA Intergenic L1MC2|LINE|L1 271172 NM_033655 79937 Hs.128474 NM_033655 ENSG00000106714 CNTNAP3 CASPR3|CNTNAP3A contactin associated protein like 3 protein-coding 175.667-11 chr10 74922345 74922591 + 1 NA intron (NR_134476, intron 1 of 1) intron (NR_134476, intron 1 of 1) 9682 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 172.5-32 chr20 7422334 7422651 + 1 NA Intergenic MamRep1151|LTR?|LTR? 50884 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 197.333-44 chr5 3657465 3657754 + 1 NA Intergenic Intergenic 61777 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 254.333-9 chr15 25461030 25461306 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -22112 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 176.333-10 chr10 72001866 72002279 + 1 NA intron (NM_004273, intron 1 of 2) intron (NM_004273, intron 1 of 2) 37677 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 143.333-85 chr8 52744052 52744295 + 1 NA Intergenic Intergenic -29707 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 134.5-22 chr11 110236368 110236536 + 1 NA intron (NM_001260493, intron 11 of 15) intron (NM_001260493, intron 11 of 15) 60260 NM_001260494 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 254.667-7 chr14 42752229 42752522 + 1 NA Intergenic Intergenic 1145519 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 225.667-17 chr2 145547989 145548260 + 1 NA Intergenic Intergenic 880157 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 221.667-10 chr11 41731904 41732249 + 1 NA intron (NR_120584, intron 1 of 5) L1MA5|LINE|L1 17508 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 176.667-63 chr5 26995884 26996216 + 1 NA intron (NM_016279, intron 1 of 11) intron (NM_016279, intron 1 of 11) 42536 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 300.333-7 chr16 9469801 9470177 + 1 NA Intergenic Intergenic -14484 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 219.667-15 chr2 40998400 40998909 + 1 NA Intergenic Intergenic -486219 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 180.5-37 chr3 157568916 157569176 + 1 NA intron (NM_001099777, intron 2 of 4) L1M4|LINE|L1 25702 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 162.5-11 chr11 34422818 34423000 + 1 NA Intergenic L1ME4a|LINE|L1 -16025 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 123.5-74 chr6 162316713 162317053 + 1 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -410249 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 128.667-30 chr12 9852037 9852223 + 1 NA TTS (NM_005127) TTS (NM_005127) 17729 NM_005127 9976 Hs.85201 NM_005127 ENSG00000110852 CLEC2B AICL|CLECSF2|HP10085|IFNRG1 C-type lectin domain family 2 member B protein-coding 160.667-83 chr9 117652072 117652302 + 1 NA intron (NR_109806, intron 2 of 5) intron (NR_109806, intron 2 of 5) 3581 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 251.5-25 chr8 122383838 122384186 + 1 NA Intergenic L2a|LINE|L2 184632 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 114.667-51 chr2 67785723 67785860 + 1 NA Intergenic Intergenic 39771 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 303.333-11 chr5 115610304 115610736 + 1 NA intron (NR_109875, intron 2 of 2) L1ME3B|LINE|L1 -8041 NM_021649 353376 Hs.718838 NM_021649 ENSG00000243414 TICAM2 MyD88-4|TICAM-2|TIRAP3|TIRP|TRAM toll like receptor adaptor molecule 2 protein-coding 173.333-38 chr21 34778412 34778679 + 1 NA intron (NR_038885, intron 1 of 2) MLT1J|LTR|ERVL-MaLR 32720 NR_038886 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 lincRNA-uc002yug.2 long intergenic non-protein coding RNA 1426 ncRNA 138.5-55 chr4 34956795 34956999 + 1 NA Intergenic L1MEg|LINE|L1 -687150 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 177.667-3 chr1 163463907 163464192 + 1 NA Intergenic Intergenic -40858 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 263.5-23 chr8 105370228 105370741 + 1 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 50941 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 264.667-19 chr3 32087473 32087940 + 1 NA Intergenic HERVK3-int|LTR|ERVK -18805 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 123.5-89 chr9 90114948 90115143 + 1 NA Intergenic Intergenic -73546 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 280.667-8 chr15 66885444 66885892 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR 70847 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 217.333-10 chr14 54465109 54465482 + 1 NA Intergenic AluJb|SINE|Alu 23685 NM_004124 2764 Hs.151413 NM_004124 ENSG00000197045 GMFB GMF glia maturation factor beta protein-coding 193.5-47 chr5 102248271 102248559 + 1 NA intron (NM_180991, intron 9 of 12) intron (NM_180991, intron 9 of 12) 47869 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 202.667-12 chr14 53182137 53182443 + 1 NA Intergenic LTR8B|LTR|ERV1 28936 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 207.667-10 chr13 112689368 112689662 + 1 NA promoter-TSS (NM_015205) promoter-TSS (NM_015205) -814 NM_015205 23250 Hs.29189 NM_015205 ENSG00000068650 ATP11A ATPIH|ATPIS ATPase phospholipid transporting 11A protein-coding 198.333-29 chr22 27321252 27321531 + 1 NA Intergenic Intergenic 10740 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 205.667-15 chr13 88925020 88925304 + 1 NA Intergenic L1MEg|LINE|L1 298309 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 329.667-11 chr8 120836358 120836806 + 1 NA Intergenic LTR79|LTR|ERVL -24536 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 234.5-20 chr20 32108300 32108698 + 1 NA Intergenic MLT1H2|LTR|ERVL-MaLR -1215 NM_014742 9777 Hs.654665 NM_014742 ENSG00000101337 TM9SF4 dJ836N17.2 transmembrane 9 superfamily member 4 protein-coding 201.5-38 chr8 133558681 133558944 + 1 NA intron (NM_003033, intron 1 of 8) MER6|DNA|TcMar-Tigger 13075 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 167.167-31 chr17 63594251 63594435 + 1 NA TTS (NM_005828) TTS (NM_005828) -6552 NM_016360 51204 Hs.174134 NM_016360 ENSG00000136463 TACO1 CCDC44 translational activator of cytochrome c oxidase I protein-coding 169.667-18 chr12 88537044 88537267 + 1 NA intron (NM_000899, intron 2 of 9) L1PA16|LINE|L1 43316 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 265.333-3 chr1 207643193 207643591 + 1 NA Intergenic Intergenic -1741 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 208.5 chr1 8681986 8682374 + 1 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 135460 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 264.667-2 chr1 163418950 163419309 + 1 NA Intergenic Intergenic 4062 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 172.333-30 chr17 71152920 71153243 + 1 NA intron (NR_104152, intron 2 of 3) AluSz|SINE|Alu 49098 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 212.5-29 chr7 99337987 99338529 + 1 NA exon (NM_001190996, exon 3 of 10) exon (NM_001190996, exon 3 of 10) 12360 NM_006409 10552 Hs.124126 NM_006409 ENSG00000241685 ARPC1A Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L actin related protein 2/3 complex subunit 1A protein-coding 326.333-8 chr9 8613517 8614068 + 1 NA intron (NM_130392, intron 3 of 30) intron (NM_130392, intron 3 of 30) 120154 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 178.667-8 chr11 105619647 105620024 + 1 NA intron (NR_046356, intron 2 of 16) intron (NR_046356, intron 2 of 16) 9129 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 229.5 chr1 67817307 67817693 + 1 NA intron (NM_018841, intron 1 of 3) MIRb|SINE|MIR -14788 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12, DIRAS3 and WLS antisense RNA 1 ncRNA 238.5-12 chr17 30065819 30066193 + 1 NA intron (NM_198529, intron 14 of 22) L1MA5|LINE|L1 -50801 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 227.333-43 chr7 144955652 144955998 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -119772 NM_001042482 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 126.5-6 chr10 71696415 71696576 + 1 NA intron (NM_022124, intron 21 of 67) MIRb|SINE|MIR 23283 NM_001164375 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 125.833-52 chr20 53268690 53268904 + 1 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 83514 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 203.333-9 chr14 52718880 52719241 + 1 NA intron (NR_158967, intron 10 of 14) intron (NR_158967, intron 10 of 14) -11106 NM_145251 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 311.5 chr10 16788336 16788701 + 1 NA intron (NM_152724, intron 1 of 7) MLT1A0|LTR|ERVL-MaLR 28906 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 135.667-115 chr9 32788437 32788599 + 1 NA 3' UTR (NM_212558, exon 2 of 2) 3' UTR (NM_212558, exon 2 of 2) 4978 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 185.333-9 chr11 34542274 34542522 + 1 NA Intergenic L2c|LINE|L2 -28604 NM_001243080 2001 Hs.11713 NM_001422 ENSG00000135374 ELF5 ESE2 E74 like ETS transcription factor 5 protein-coding 173.333-70 chr8 139263507 139263776 + 1 NA Intergenic L1MD2|LINE|L1 -349600 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 130.667-41 chr2 127160896 127161132 + 1 NA Intergenic MLT2B1|LTR|ERVL 44753 NM_001001665 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 269.5-13 chr21 23739566 23739883 + 1 NA Intergenic Intergenic -354889 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 161.5-50 chr8 77286163 77286467 + 1 NA Intergenic Intergenic -164382 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 182.333-7 chr10 59295477 59295719 + 1 NA intron (NM_001347852, intron 5 of 12) MLT1E3|LTR|ERVL-MaLR 66951 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 231.333-10 chr11 112960263 112960680 + 1 NA promoter-TSS (NM_001076682) promoter-TSS (NM_001076682) -949 NM_181351 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 203.833-17 chr3 125654733 125654953 + 1 NA Intergenic Intergenic -59346 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 214.667-46 chrX 64165692 64166213 + 1 NA Intergenic AluJr|SINE|Alu 39756 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 148.333-105 chr8 84250584 84250773 + 1 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 66012 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 174.333-51 chr6 4578426 4578672 + 1 NA Intergenic L1MC4|LINE|L1 -32016 NR_122107 497048 Hs.591355 NM_001011540 ENSG00000205444 KU-MEL-3 - uncharacterized LOC497048 ncRNA 195.833-23 chr4 150031889 150032114 + 1 NA Intergenic Intergenic -46444 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 221.667-8 chr10 90618069 90618469 + 1 NA Intergenic Intergenic -77464 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 190.333-59 chr8 120181779 120182020 + 1 NA intron (NM_021110, intron 5 of 47) AluSc8|SINE|Alu 56797 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 170.667-20 chr14 72299908 72300210 + 1 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -216761 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 164.667-65 chr6 114090088 114090306 + 1 NA intron (NR_125845, intron 5 of 9) intron (NR_125845, intron 5 of 9) -27320 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 219.333-26 chr3 186485874 186486212 + 1 NA intron (NR_033844, intron 2 of 7) MER31-int|LTR|ERV1 7618 NR_033844 253573 Hs.97386 NR_033844 ENSG00000224406 LINC02052 - long intergenic non-protein coding RNA 2052 ncRNA 268.667-15 chr9 27776431 27776904 + 1 NA Intergenic Intergenic -202801 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 211.667-14 chr17 58129310 58129632 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR -25683 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 125.667-123 chr8 134059744 134059902 + 1 NA Intergenic L1MA7|LINE|L1 173327 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 185.5-42 chr6 46768055 46768521 + 1 NA Intergenic L1ME1|LINE|L1 21371 NM_001162435 100287718 Hs.736491 NM_001162435 ENSG00000230062 ANKRD66 - ankyrin repeat domain 66 protein-coding 192.667-21 chr15 71219467 71219719 + 1 NA intron (NM_024817, intron 3 of 16) intron (NM_024817, intron 3 of 16) -30534 NR_120348 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 335.667-5 chr4 56114958 56115840 + 1 NA Intergenic MIRc|SINE|MIR -54796 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 182.667-38 chr20 63147234 63147454 + 1 NA Intergenic L1ME2|LINE|L1 -31156 NR_029670 406909 NR_029670 ENSG00000207598 MIR124-3 MIRN124-3|MIRN124A3|mir-124-3 microRNA 124-3 ncRNA 142.333-55 chr2 102470580 102470785 + 1 NA Intergenic L1M4b|LINE|L1 -2544 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 162.5-21 chr15 26835446 26835673 + 1 NA Intergenic L1MB7|LINE|L1 -31503 NM_000810 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 239.833-6 chr11 33107945 33108396 + 1 NA intron (NM_001326, intron 4 of 20) intron (NM_001326, intron 4 of 20) 32020 NR_015451 283267 Hs.533701 NR_015451 ENSG00000280798 LINC00294 NCRNA00294 long intergenic non-protein coding RNA 294 ncRNA 285.5-2 chr10 16045549 16046043 + 1 NA Intergenic L1ME1|LINE|L1 -185263 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 196.5-41 chr9 14259480 14259830 + 1 NA intron (NR_161383, intron 1 of 7) AluSx1|SINE|Alu 40609 NM_001369479 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 141.667-24 chr13 103085717 103085903 + 1 NA Intergenic Intergenic -19393 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 296.333-7 chr16 63750294 63750774 + 1 NA Intergenic MER50|LTR|ERV1 1371529 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 199.5-46 chr8 62784468 62784770 + 1 NA intron (NM_001304533, intron 4 of 6) L1M4|LINE|L1 -193242 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 281.167-11 chr7 95435777 95436236 + 1 NA promoter-TSS (NM_001018161) promoter-TSS (NM_001018161) -934 NM_001018161 5445 Hs.514420 NM_000305 ENSG00000105854 PON2 - paraoxonase 2 protein-coding 172.333-34 chr2 50116825 50117070 + 1 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -142744 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 152.5-30 chr2 188466680 188466947 + 1 NA intron (NM_016315, intron 2 of 11) L2|LINE|L2 169321 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 294.667-2 chr13 31507760 31508098 + 1 NA Intergenic L1ME3B|LINE|L1 -231597 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 155.333-35 chr16 4111412 4111663 + 1 NA intron (NM_001116, intron 2 of 10) intron (NM_001116, intron 2 of 10) 4905 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 271.5-14 chr2 102370869 102371426 + 1 NA intron (NM_003855, intron 3 of 10) AluSq2|SINE|Alu 14864 NM_001282399 8809 Hs.469521 NM_003855 ENSG00000115604 IL18R1 CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP interleukin 18 receptor 1 protein-coding 130.833-24 chr17 70239996 70240268 + 1 NA Intergenic Intergenic 70597 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 216.667-8 chr12 21038778 21039170 + 1 NA intron (NM_001009562, intron 5 of 12) L1MA2|LINE|L1 23278 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 181.333-3 chr1 220621071 220621393 + 1 NA intron (NM_018650, intron 9 of 17) L1ME4c|LINE|L1 -69131 NM_024709 79762 Hs.519839 NM_024709 ENSG00000162817 C1orf115 - chromosome 1 open reading frame 115 protein-coding 162.333-26 chr17 73854082 73854349 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -25678 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 134.667-4 chr1 198762547 198762720 + 1 NA Intergenic L1PA13|LINE|L1 96349 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 161.167-61 chr9 37820771 37821099 + 1 NA intron (NM_001286810, intron 2 of 6) L1ME4b|LINE|L1 20138 NM_024345 79269 Hs.118394 NM_024345 ENSG00000122741 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 245.167-9 chr3 182405880 182406415 + 1 NA Intergenic Intergenic 80215 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 220.667-33 chr5 124558447 124558743 + 1 NA Intergenic L1ME3D|LINE|L1 -120075 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 122.5-18 chr11 101429969 101430126 + 1 NA Intergenic Intergenic 89858 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 156.5-85 chr8 84121165 84121688 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR -61361 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 175.333-64 chr8 74609442 74609709 + 1 NA intron (NR_033830, intron 1 of 5) L1MEc|LINE|L1 9709 NR_033830 441355 Hs.647162 NR_033830 ENSG00000254349 MIR2052HG - MIR2052 host gene ncRNA 126.5-76 chr5 127356721 127356891 + 1 NA intron (NM_001308121, intron 4 of 13) MER103C|DNA|hAT-Charlie 66010 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 355.5-8 chr9 28228499 28229146 + 1 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 490483 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 397.334-2 chr2 107183641 107184747 + 1 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 165331 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 151.667 chr1 63852922 63853128 + 1 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 79008 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 151.667-62 chr4 151956824 151957030 + 1 NA Intergenic L4_B_Mam|LINE|RTE-X -143826 NR_121628 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 192.667-14 chr12 95233541 95233862 + 1 NA intron (NM_001352088, intron 2 of 12) AluSz|SINE|Alu 15894 NR_147921 55591 Hs.24135 NM_017599 ENSG00000028203 VEZT VEZATIN vezatin, adherens junctions transmembrane protein protein-coding 159.833-23 chr16 52950836 52951204 + 1 NA Intergenic Charlie29a|DNA|hAT-Charlie 101853 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 230.333-26 chr6 98153907 98154255 + 1 NA Intergenic L1PA8|LINE|L1 129550 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 129.5-60 chr3 118447052 118447393 + 1 NA Intergenic MIR|SINE|MIR -194546 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 302.5-2 chr15 69633611 69634168 + 1 NA intron (NR_126437, intron 3 of 5) L1MC5a|LINE|L1 41689 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 207.667-44 chr7 8054601 8054941 + 1 NA intron (NM_138426, intron 3 of 7) intron (NM_138426, intron 3 of 7) 85975 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 177.667 chr1 60009785 60010038 + 1 NA intron (NM_152377, intron 9 of 11) L1MC4a|LINE|L1 63859 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 290.5-3 chr11 91296541 91297080 + 1 NA Intergenic L1MB8|LINE|L1 -427608 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 151.667-16 chr12 51400858 51401230 + 1 NA intron (NM_001258401, intron 1 of 24) LTR1|LTR|ERV1 -9638 NM_007210 11226 Hs.505575 NM_007210 ENSG00000139629 GALNT6 GALNAC-T6|GalNAcT6 polypeptide N-acetylgalactosaminyltransferase 6 protein-coding 243.833-14 chr22 42975313 42975828 + 1 NA intron (NM_001184970, intron 1 of 10) L1ME3F|LINE|L1 -15234 NM_001349970 11252 Hs.162877 NM_007229 ENSG00000100266 PACSIN2 SDPII protein kinase C and casein kinase substrate in neurons 2 protein-coding 207.833-18 chr2 30144379 30144858 + 1 NA Intergenic Intergenic -2389 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 123.667-42 chr17 76755577 76755746 + 1 NA intron (NR_148240, intron 9 of 13) intron (NR_148240, intron 9 of 13) 18160 NM_001242533 79157 Hs.73965 NM_024311 ENSG00000092931 MFSD11 ET major facilitator superfamily domain containing 11 protein-coding 205.5-30 chr4 39746075 39746427 + 1 NA intron (NM_001312646, intron 3 of 4) L2b|LINE|L2 48115 NM_005339 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 155.333-19 chr11 84017810 84018143 + 1 NA intron (NM_001142699, intron 11 of 27) L1M4a1|LINE|L1 255304 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 205.667-2 chr1 153413764 153414034 + 1 NA intron (NM_001319198, intron 1 of 2) AluSq|SINE|Alu -2621 NM_176823 338324 Hs.442337 NM_176823 ENSG00000184330 S100A7A NICE-2|NICE2|S100A15|S100A7L1|S100A7f S100 calcium binding protein A7A protein-coding 194.333-2 chr10 18075628 18075825 + 1 NA Intergenic L2|LINE|L2 -64698 NM_201593 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 230.333-16 chr22 34998362 34998658 + 1 NA promoter-TSS (NR_138042) promoter-TSS (NR_138042) -594 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 175.333-17 chr15 71416458 71416654 + 1 NA intron (NM_024817, intron 6 of 16) L1MA2|LINE|L1 -130680 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 205.333-10 chr12 48721485 48721849 + 1 NA Intergenic Intergenic -4960 NM_001277842 904 Hs.92308 NM_001240 ENSG00000129315 CCNT1 CCNT|CYCT1|HIVE1 cyclin T1 protein-coding 197.667-53 chr7 49954706 49955087 + 1 NA intron (NM_001159878, intron 7 of 7) L1ME1|LINE|L1 138350 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 242.5-5 chr14 26742532 26742938 + 1 NA intron (NR_147061, intron 3 of 6) intron (NR_147061, intron 3 of 6) -66613 NR_110557 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 137.167-30 chr2 6845033 6845322 + 1 NA intron (NM_001256478, intron 3 of 3) HUERS-P3-int|LTR|ERV1 -4713 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 174.667-62 chr7 77734429 77734673 + 1 NA intron (NM_198467, intron 1 of 7) AluSx|SINE|Alu -37206 NR_038361 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 175.5-55 chr7 14320236 14320516 + 1 NA intron (NM_001350717, intron 22 of 24) ERV3-16A3_I-int|LTR|ERVL -328951 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 238.333 chr1 150574771 150575121 + 1 NA promoter-TSS (NR_104133) promoter-TSS (NR_104133) -394 NR_104133 574406 Hs.516243 NM_001025493 ENSG00000203804 ADAMTSL4-AS1 C1orf138 ADAMTSL4 antisense RNA 1 ncRNA 120.833-43 chr3 56060302 56060427 + 1 NA intron (NR_132749, intron 7 of 17) MIR|SINE|MIR -207770 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 156.5 chr1 19798282 19798492 + 1 NA intron (NM_181719, intron 1 of 15) intron (NM_181719, intron 1 of 15) 962 NM_001349115 255104 Hs.466729 NM_181719 ENSG00000162542 TMCO4 - transmembrane and coiled-coil domains 4 protein-coding 313.5-6 chr4 14945880 14946589 + 1 NA intron (NR_038857, intron 7 of 7) L1ME3|LINE|L1 55811 NR_038857 441009 Hs.535004 NR_038857 ENSG00000247624 CPEB2-DT CPEB2-AS1 CPEB2 divergent transcript ncRNA 197.667-38 chr20 54948017 54948467 + 1 NA Intergenic Intergenic 472649 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 203.833-18 chr3 162319826 162320145 + 1 NA Intergenic L1M4|LINE|L1 823177 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 289.333-3 chr14 64727023 64727349 + 1 NA intron (NM_001308147, intron 1 of 16) MIRb|SINE|MIR 22762 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 171.167-55 chr8 12922493 12922974 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR -22940 NM_020844 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 235.333-2 chr12 67805414 67806044 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -76254 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LINC02421 - long intergenic non-protein coding RNA 2421 ncRNA 137.333-64 chr3 133509099 133509314 + 1 NA Intergenic Charlie1|DNA|hAT-Charlie -18060 NR_135277 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 149.333-24 chr13 36798784 36799022 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -20299 NM_000538 5994 Hs.24422 NM_000538 ENSG00000133111 RFXAP - regulatory factor X associated protein protein-coding 278.5-15 chr7 46727881 46728294 + 1 NA Intergenic L1PREC2|LINE|L1 -30965 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 200.333-26 chr3 33135798 33136018 + 1 NA intron (NM_006371, intron 6 of 6) L1MB7|LINE|L1 21950 NM_006371 10491 Hs.517888 NM_006371 ENSG00000170275 CRTAP CASP|LEPREL3|OI7|P3H5 cartilage associated protein protein-coding 200.167-30 chr2 164008622 164009037 + 1 NA Intergenic Intergenic -272821 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 192.5-17 chr16 5496502 5496765 + 1 NA Intergenic Intergenic 119617 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 139.667-55 chr2 138347951 138348239 + 1 NA Intergenic Tigger4|DNA|TcMar-Tigger -153675 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 338.5-4 chr2 56986920 56987578 + 1 NA Intergenic Intergenic -801479 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 271.5-20 chr5 37323122 37323484 + 1 NA intron (NM_001278312, intron 20 of 33) L1MB7|LINE|L1 47803 NM_004298 9631 Hs.547696 NM_004298 ENSG00000113569 NUP155 ATFB15|N155 nucleoporin 155 protein-coding 196.667-34 chr21 27512527 27512780 + 1 NA Intergenic LTR16E2|LTR|ERVL -209726 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 230.333-34 chr8 87458125 87458636 + 1 NA Intergenic Intergenic 415635 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 342.667-3 chr10 88761493 88761998 + 1 NA intron (NM_001102469, intron 1 of 8) (CTAT)n|Simple_repeat|Simple_repeat 339 NM_001102469 643418 Hs.632091 NM_001102469 ENSG00000204020 LIPN ARCI8|LI4|LIPL4|bA186O14.3 lipase family member N protein-coding 264.167-19 chr5 27111608 27112009 + 1 NA Intergenic L1PA8|LINE|L1 -73222 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 268.333-7 chr2 112478560 112478843 + 1 NA Intergenic L1M5|LINE|L1 -3455 NM_153712 150465 Hs.358997 NM_153712 ENSG00000114999 TTL - tubulin tyrosine ligase protein-coding 292.333-4 chr18 42405705 42406163 + 1 NA intron (NR_046174, intron 4 of 9) MLT1N2|LTR|ERVL-MaLR 219266 NR_046174 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 204.333-47 chr6 47373456 47373821 + 1 NA Intergenic L1MA8|LINE|L1 -63733 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 264.667-24 chr7 32588522 32589092 + 1 NA TTS (NM_015060) TTS (NM_015060) 93318 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 151.5-75 chr9 36719689 36719938 + 1 NA Intergenic MER91C|DNA|hAT-Tip100 103786 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 204.333-4 chr10 55815843 55816098 + 1 NA Intergenic MER57-int|LTR|ERV1 -188028 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 230.833-8 chr2 58450698 58451060 + 1 NA Intergenic Intergenic -69874 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 260.5-16 chr4 67503592 67504233 + 1 NA intron (NR_155754, intron 12 of 18) intron (NR_155754, intron 12 of 18) 41591 NM_001362481 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 161.333-3 chr1 221127971 221128233 + 1 NA Intergenic L1PA16|LINE|L1 208194 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 364.5 chr1 164836298 164837394 + 1 NA intron (NM_001353131, intron 7 of 7) intron (NM_001353131, intron 7 of 7) -62205 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 219.333-19 chr18 44609175 44609607 + 1 NA Intergenic Intergenic -70682 NM_001130110 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 182.333-19 chr14 69000143 69000389 + 1 NA Intergenic Intergenic 20584 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 230.167-24 chr8 127810599 127811006 + 1 NA intron (NR_003367, intron 1 of 8) L2c|LINE|L2 14840 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 208.333-32 chr4 32243728 32244193 + 1 NA Intergenic Intergenic -107078 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 207.667-37 chr4 113709066 113709296 + 1 NA intron (NM_001321585, intron 2 of 19) intron (NM_001321585, intron 2 of 19) 52557 NM_001321591 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 144.5-73 chr5 27180795 27180941 + 1 NA Intergenic Intergenic -142282 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 162.5-53 chr4 32541860 32542224 + 1 NA Intergenic Intergenic 191004 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 258.667-10 chr16 60271017 60271492 + 1 NA Intergenic Intergenic 88539 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 212.5-20 chr4 44673012 44673347 + 1 NA Intergenic Intergenic -5216 NM_001345868 60558 Hs.546419 NM_021927 ENSG00000151806 GUF1 EF-4|EF4|EIEE40 GUF1 homolog, GTPase protein-coding 140.167-31 chr2 11890086 11890292 + 1 NA Intergenic Intergenic -53203 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 342.833-5 chr4 35928354 35929279 + 1 NA Intergenic Intergenic 315123 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 267.167-13 chr2 159959156 159959458 + 1 NA intron (NM_001007267, intron 20 of 26) intron (NM_001007267, intron 20 of 26) -54551 NM_001198759 100526664 Hs.153563 NM_001198759 ENSG00000248672 LY75-CD302 CD205|CLEC13B|DEC-205|LY75|Ly-75|gp200-MR6 LY75-CD302 readthrough protein-coding 201.333-45 chr9 78594567 78594909 + 1 NA Intergenic Intergenic 297613 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 227.333-9 chr11 5149329 5149805 + 1 NA Intergenic MER58D|DNA|hAT-Charlie 2802 NM_012375 23538 Hs.553520 NM_012375 ENSG00000182070 OR52A1 HPFH1OR olfactory receptor family 52 subfamily A member 1 protein-coding 149.333-32 chr14 51344811 51345047 + 1 NA intron (NR_038358, intron 1 of 4) intron (NR_038358, intron 1 of 4) 11536 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 331.5-5 chr5 109301785 109302354 + 1 NA intron (NR_149040, intron 3 of 3) intron (NR_149040, intron 3 of 3) 24300 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 241.333-8 chr12 21653192 21653605 + 1 NA intron (NM_001174097, intron 2 of 7) MER1B|DNA|hAT-Charlie 4396 NM_001174097 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 172.5-23 chr15 76514191 76514601 + 1 NA intron (NR_148227, intron 23 of 32) intron (NR_148227, intron 23 of 32) -72251 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 178.667-78 chrX 93265124 93265350 + 1 NA Intergenic Intergenic 408341 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 134.167-27 chr16 61077032 61077221 + 1 NA Intergenic Intergenic -21360 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 184.833 chr1 20889876 20890089 + 1 NA intron (NM_003760, intron 13 of 31) AluSz6|SINE|Alu 98450 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 129.667-35 chr14 70840359 70840651 + 1 NA Intergenic MLT1A1|LTR|ERVL-MaLR -30992 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 230.333-35 chr8 100524234 100524865 + 1 NA intron (NM_001270377, intron 4 of 4) intron (NM_001270377, intron 4 of 4) 35210 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 272.167-18 chr18 11239551 11240049 + 1 NA Intergenic L1ME1|LINE|L1 -91038 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 164.333-65 chr6 42594632 42594846 + 1 NA intron (NM_015255, intron 4 of 46) MamSINE1|SINE|tRNA-RTE 30710 NM_001184801 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 131.5-59 chr4 113814393 113814596 + 1 NA Intergenic MIR|SINE|MIR -52567 NM_172127 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 192.167-19 chr2 33984734 33985132 + 1 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -82293 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 164.667-10 chr10 110511126 110511354 + 1 NA 3' UTR (NM_004419, exon 4 of 4) 3' UTR (NM_004419, exon 4 of 4) 13333 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 313.333-5 chr4 60199297 60199954 + 1 NA Intergenic MLT1E1|LTR|ERVL-MaLR -722994 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 122.333-68 chr22 23210032 23210178 + 1 NA intron (NM_004327, intron 1 of 22) intron (NM_004327, intron 1 of 22) 29596 NM_021574 613 Hs.517461 NM_004327 ENSG00000186716 BCR ALL|BCR1|CML|D22S11|D22S662|PHL BCR activator of RhoGEF and GTPase protein-coding 152.5-32 chr20 59952780 59953059 + 1 NA Intergenic Intergenic -5477 NR_145482 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 169.667-46 chr20 21741393 21741601 + 1 NA Intergenic L1MEf|LINE|L1 35833 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 376.5-5 chr11 103749878 103750514 + 1 NA Intergenic Intergenic -99710 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 151.667-20 chr13 67420131 67420439 + 1 NA Intergenic Intergenic 47898 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 262.167-17 chr3 164008882 164009188 + 1 NA Intergenic MLT1H|LTR|ERVL-MaLR 162521 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 140.667-23 chr14 34211224 34211544 + 1 NA Intergenic L1MEd|LINE|L1 250856 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 117.833-58 chr4 73308146 73308407 + 1 NA Intergenic Intergenic -49478 NM_015574 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 263.667 chr10 122161535 122161824 + 1 NA intron (NM_206862, intron 7 of 22) intron (NM_206862, intron 7 of 22) -1951 NM_001291878 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 127.333-80 chr3 120891555 120891693 + 1 NA Intergenic L2|LINE|L2 -16581 NR_145516 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5 like protein-coding 195.833-28 chr7 90354414 90354818 + 1 NA intron (NM_033107, intron 3 of 9) intron (NM_033107, intron 3 of 9) 7900 NM_033107 85865 Hs.593547 NM_033107 ENSG00000105793 GTPBP10 ObgH2|UG0751c10 GTP binding protein 10 protein-coding 158.667-84 chr7 39456643 39457039 + 1 NA intron (NM_001370959, intron 8 of 9) intron (NM_001370959, intron 8 of 9) -50495 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 167.5-45 chr4 36884562 36884876 + 1 NA Intergenic LTR40A1|LTR|ERVL -117060 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 160.333-39 chr3 135260070 135260401 + 1 NA 3' UTR (NM_004441, exon 16 of 16) 3' UTR (NM_004441, exon 16 of 16) 464975 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 328.333 chr10 31942905 31943327 + 1 NA Intergenic Intergenic -14240 NM_001270695 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 118.833-41 chr2 135623444 135623601 + 1 NA intron (NM_001282798, intron 7 of 25) intron (NM_001282798, intron 7 of 25) 37170 NM_001282798 23518 Hs.412462 NM_015361 ENSG00000048991 R3HDM1 R3HDM R3H domain containing 1 protein-coding 264.167-9 chr12 125460339 125460868 + 1 NA intron (NM_052907, intron 3 of 8) intron (NM_052907, intron 3 of 8) 133987 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 127.167-95 chr8 142263979 142264118 + 1 NA intron (NM_001366901, intron 12 of 13) L1MEd|LINE|L1 65692 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 195.167-9 chr15 23471083 23471472 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL -24034 NM_001304388 283685 NM_182561 ENSG00000174450 GOLGA6L2 CT105 golgin A6 family like 2 protein-coding 186.5-44 chr20 47734826 47735032 + 1 NA intron (NM_198596, intron 3 of 20) intron (NM_198596, intron 3 of 20) 51135 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 268.667 chr10 81402482 81402787 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -472560 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 228.833-9 chr19 28071062 28071324 + 1 NA Intergenic MER31B|LTR|ERV1 -277253 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 192.333-46 chr5 130111960 130112206 + 1 NA intron (NM_175856, intron 2 of 2) MER5A|DNA|hAT-Charlie 207618 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 148.333-111 chr9 28067313 28067480 + 1 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -493530 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 201.5 chr1 60974042 60974309 + 1 NA Intergenic MLT1H|LTR|ERVL-MaLR -3399 NR_110617 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 113.333-15 chr10 44196446 44196673 + 1 NA Intergenic Intergenic -96191 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 157.333-36 chr2 51626178 51626466 + 1 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 593721 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 340.667-8 chr8 140939353 140939813 + 1 NA intron (NM_001352699, intron 1 of 35) intron (NM_001352699, intron 1 of 35) 61421 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 210.667-40 chr3 154111330 154111678 + 1 NA intron (NR_037901, intron 1 of 3) intron (NR_037901, intron 1 of 3) -9499 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 117.833-71 chr6 86454171 86454306 + 1 NA Intergenic Intergenic -483290 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 186.667-30 chr2 13700947 13701232 + 1 NA Intergenic Intergenic -694076 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 190.667-19 chr17 81363247 81363720 + 1 NA Intergenic Intergenic 21642 NM_001347841 100130370 Hs.646594 NM_001272086 LOC100130370 - uncharacterized LOC100130370 protein-coding 190.333-42 chr3 2886863 2887253 + 1 NA exon (NM_001350095, exon 10 of 25) exon (NM_001350095, exon 10 of 25) -5157 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 142.5-17 chr11 27523465 27523666 + 1 NA intron (NR_033314, intron 1 of 6) MER33|DNA|hAT-Charlie -8518 NR_107054 102465881 NR_107054 ENSG00000278483 MIR8087 hsa-mir-8087 microRNA 8087 ncRNA 178.333-18 chr17 26835895 26836123 + 1 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat 253232 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 182.833-46 chr5 132166590 132167027 + 1 NA Intergenic L1MB7|LINE|L1 -18068 NR_047470 100861518 Hs.519568 NR_047470 ENSG00000237714 P4HA2-AS1 - P4HA2 antisense RNA 1 ncRNA 194.5-30 chr4 149580049 149580300 + 1 NA intron (NM_001363507, intron 9 of 13) L3|LINE|CR1 235669 NM_001363509 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 193.333-31 chr2 135724007 135724485 + 1 NA exon (NM_015361, exon 26 of 26) exon (NM_015361, exon 26 of 26) -17609 NM_014607 23190 Hs.591242 NM_014607 ENSG00000144224 UBXN4 UBXD2|UBXDC1|erasin UBX domain protein 4 protein-coding 255.333-9 chr15 65632890 65633360 + 1 NA intron (NM_001301033, intron 4 of 11) intron (NM_001301033, intron 4 of 11) 9170 NM_001301031 9187 Hs.173092 NM_004727 ENSG00000074621 SLC24A1 CSNB1D|HsT17412|NCKX|NCKX1|RODX solute carrier family 24 member 1 protein-coding 170.667-11 chr12 64275428 64275669 + 1 NA intron (NM_001099676, intron 7 of 10) AluJr|SINE|Alu -53252 NM_152440 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 121.667-107 chr9 28366097 28366289 + 1 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 353112 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 176.5-17 chr13 46557080 46557408 + 1 NA intron (NM_001164213, intron 1 of 18) intron (NM_001164213, intron 1 of 18) 4074 NM_001164211 23143 Hs.507971 NM_015116 ENSG00000136141 LRCH1 CHDC1|NP81 leucine rich repeats and calponin homology domain containing 1 protein-coding 207.667-30 chr3 45983762 45984010 + 1 NA intron (NM_024513, intron 2 of 17) intron (NM_024513, intron 2 of 17) 11938 NM_024513 79443 Hs.200227 NM_024513 ENSG00000163820 FYCO1 CATC2|CTRCT18|RUFY3|ZFYVE7 FYVE and coiled-coil domain containing 1 protein-coding 225.333-7 chr14 49513719 49514008 + 1 NA Intergenic AluJb|SINE|Alu 72517 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 174.833-27 chr20 54557479 54557983 + 1 NA intron (NM_018431, intron 2 of 7) L2a|LINE|L2 82138 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 280.667-6 chr12 33885595 33886006 + 1 NA Intergenic Intergenic -136696 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 256.667-15 chr2 187737235 187737940 + 1 NA Intergenic Intergenic -183082 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 156.167-41 chr22 46238755 46239075 + 1 NA 3' UTR (NM_005036, exon 9 of 9) 3' UTR (NM_005036, exon 9 of 9) 11378 NM_207327 150383 Hs.103110 NM_207327 ENSG00000205643 CDPF1 C22orf40 cysteine rich DPF motif domain containing 1 protein-coding 310.333-9 chr4 182317676 182318166 + 1 NA intron (NM_001080477, intron 1 of 27) intron (NM_001080477, intron 1 of 27) 74519 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 220.5-13 chr17 53384201 53384548 + 1 NA Intergenic Intergenic 398869 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 170.167-58 chrX 38545417 38545667 + 1 NA Intergenic Intergenic -15936 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 117.5-64 chr6 97446643 97446812 + 1 NA intron (NR_110757, intron 1 of 4) L2a|LINE|L2 141141 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 135.5-67 chr6 55821070 55821462 + 1 NA intron (NM_001329754, intron 1 of 5) intron (NM_001329754, intron 1 of 5) 54324 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 250.167-11 chr22 19832976 19833252 + 1 NA intron (NM_053004, intron 2 of 7) L1MEf|LINE|L1 21760 NM_024627 79680 Hs.105642 NM_024627 ENSG00000215012 RTL10 BOP|C22orf29 retrotransposon Gag like 10 protein-coding 353.833 chr22 17123888 17124503 + 1 NA intron (NR_103793, intron 1 of 3) AluSx1|SINE|Alu 2600 NR_103793 100996342 Hs.714550 NR_103793 ENSG00000235478 LINC01664 - long intergenic non-protein coding RNA 1664 ncRNA 179.833-18 chr2 5524681 5525127 + 1 NA Intergenic Intergenic 166214 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 137.667-70 chr3 136393117 136393348 + 1 NA intron (NM_005862, intron 22 of 33) intron (NM_005862, intron 22 of 33) 142892 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 228.5-24 chr4 88473177 88473572 + 1 NA intron (NM_016323, intron 11 of 22) (TCTC)n|Simple_repeat|Simple_repeat 16255 NM_016323 51191 Hs.26663 NM_016323 ENSG00000138646 HERC5 CEB1|CEBP1 HECT and RLD domain containing E3 ubiquitin protein ligase 5 protein-coding 245.5-12 chr22 27886359 27886930 + 1 NA intron (NM_001284278, intron 7 of 11) intron (NM_001284278, intron 7 of 11) 32570 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 230.333-20 chr3 196170037 196170541 + 1 NA Intergenic AluJo|SINE|Alu 27653 NR_034088 401109 Hs.280133 NM_001001699 ENSG00000224652 LINC00885 - long intergenic non-protein coding RNA 885 ncRNA 192.833-15 chr14 21311710 21312091 + 1 NA exon (NM_020366, exon 8 of 24) exon (NM_020366, exon 8 of 24) 23923 NM_020366 57096 Hs.126035 NM_020366 ENSG00000092200 RPGRIP1 CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d RPGR interacting protein 1 protein-coding 167.5-36 chr2 126249027 126249350 + 1 NA Intergenic L1ME3G|LINE|L1 -131203 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 148.167-24 chr15 84013398 84013801 + 1 NA intron (NM_207517, intron 23 of 29) AluJb|SINE|Alu -66588 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 138.5-86 chr8 132947482 132947710 + 1 NA intron (NM_003235, intron 26 of 47) intron (NM_003235, intron 26 of 47) 80638 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 241.667-25 chr3 96177399 96177823 + 1 NA Intergenic Intergenic -182353 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 115.5-3 chr1 69493116 69493264 + 1 NA Intergenic Intergenic 59935 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 164.333-36 chr2 209538639 209538919 + 1 NA intron (NM_001039538, intron 2 of 14) intron (NM_001039538, intron 2 of 14) -40557 NM_001363913 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 250.167-5 chr15 60453313 60453725 + 1 NA 3' UTR (NM_001276385, exon 9 of 9) 3' UTR (NM_001276385, exon 9 of 9) 25623 NM_001018089 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 317.333-12 chr8 88813324 88813885 + 1 NA Intergenic L1PA17|LINE|L1 -486121 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 299.167-6 chr4 44935177 44935557 + 1 NA Intergenic Intergenic -208733 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 134.667-86 chr5 102655716 102656183 + 1 NA intron (NR_103753, intron 1 of 2) intron (NR_103753, intron 1 of 2) 15515 NR_103755 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 424.333 chr3 1126542 1127129 + 1 NA 5' UTR (NM_001349358, exon 2 of 21) 5' UTR (NM_001349358, exon 2 of 21) 33811 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 364.5-8 chr7 82695598 82696074 + 1 NA Intergenic MER41B|LTR|ERV1 -251880 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 116.5-16 chr13 84053546 84053718 + 1 NA Intergenic Intergenic -86970 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 140.667-56 chr3 112073665 112073926 + 1 NA intron (NR_026734, intron 12 of 16) intron (NR_026734, intron 12 of 16) -12540 NM_001171747 79669 Hs.434247 NM_024616 ENSG00000114529 C3orf52 TTMP chromosome 3 open reading frame 52 protein-coding 185.333-58 chr7 51648894 51649344 + 1 NA Intergenic Intergenic -255863 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 292.167 chr16 84815759 84816314 + 1 NA Intergenic Intergenic -3949 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 124.667-113 chr7 36918304 36918575 + 1 NA TTS (NR_031604) TTS (NR_031604) 993 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 115.333-74 chr4 12803740 12804036 + 1 NA Intergenic Intergenic 580437 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 382.667-5 chr8 118983754 118984207 + 1 NA intron (NM_001324095, intron 1 of 7) L1PREC2|LINE|L1 31717 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 216.333-15 chr15 89505819 89506180 + 1 NA non-coding (NR_027074, exon 3 of 3) non-coding (NR_027074, exon 3 of 3) -9416 NM_001321041 51458 Hs.459284 NM_016321 ENSG00000140519 RHCG C15orf6|PDRC2|RHGK|SLC42A3 Rh family C glycoprotein protein-coding 152.5-13 chr14 61009268 61009495 + 1 NA intron (NR_033344, intron 3 of 16) intron (NR_033344, intron 3 of 16) -27691 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 141.667-10 chr10 86771272 86771555 + 1 NA intron (NM_004329, intron 1 of 12) intron (NM_004329, intron 1 of 12) 14774 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 147.5-23 chr12 27080580 27080728 + 1 NA TTS (NM_001080406) TTS (NM_001080406) 1868 NM_001080406 728858 Hs.334003 NM_001080406 ENSG00000214700 C12orf71 - chromosome 12 open reading frame 71 protein-coding 218.333-16 chr16 22385652 22386145 + 1 NA non-coding (NR_136333, exon 1 of 4) non-coding (NR_136333, exon 1 of 4) 129 NR_136333 105371130 Hs.639607 NR_136333 MFSD13B - major facilitator superfamily domain containing 13B (pseudogene) pseudo 158.667-81 chr7 9896902 9897180 + 1 NA Intergenic L1MA2|LINE|L1 262771 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 155.333-99 chr9 27353207 27353461 + 1 NA intron (NM_024761, intron 3 of 3) intron (NM_024761, intron 3 of 3) -56184 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 125.5-7 chr10 79627811 79628040 + 1 NA TTS (NR_134315) TTS (NR_134315) 16986 NM_001164644 653509 Hs.535295 NM_005411 ENSG00000122852 SFTPA1 COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 surfactant protein A1 protein-coding 260.333-3 chr12 132626400 132626848 + 1 NA intron (NM_006231, intron 45 of 48) L1MC|LINE|L1 7848 NM_016318 22953 Hs.258580 NM_012226 ENSG00000187848 P2RX2 DFNA41|P2X2 purinergic receptor P2X 2 protein-coding 282.167-17 chr8 71865495 71866064 + 1 NA intron (NR_033651, intron 1 of 2) intron (NR_033651, intron 1 of 2) -21283 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 117.667-33 chr12 65438990 65439214 + 1 NA intron (NM_001031679, intron 5 of 6) L1MEj|LINE|L1 118209 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 350.5 chr12 13503344 13503799 + 1 NA Intergenic Intergenic -126826 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 156.333-39 chr17 62166440 62166843 + 1 NA Intergenic AluSx|SINE|Alu -101363 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 167.333-56 chr5 65830743 65830911 + 1 NA Intergenic Intergenic -95727 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 222.5-24 chr4 111574947 111575336 + 1 NA Intergenic AluSx|SINE|Alu -570313 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 168.667-61 chr4 151636381 151636634 + 1 NA intron (NM_001109977, intron 8 of 13) L1M4|LINE|L1 124500 NM_004564 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 243.333 chr1 71717758 71718072 + 1 NA intron (NM_173808, intron 3 of 6) MLT1B|LTR|ERVL-MaLR 119097 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 232.667-4 chr10 83325281 83325648 + 1 NA Intergenic L1MB7|LINE|L1 351625 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 171.167-21 chr17 57745172 57745357 + 1 NA promoter-TSS (NM_001282544) promoter-TSS (NM_001282544) 35 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 160.667-79 chr8 133825232 133825527 + 1 NA Intergenic Intergenic -48027 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 242.333-23 chr8 77155727 77156318 + 1 NA Intergenic L1MEd|LINE|L1 -154978 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 116.5-92 chr8 84851120 84851293 + 1 NA intron (NM_001287244, intron 4 of 7) Tigger6a|DNA|TcMar-Tigger 145279 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 226.333-20 chr2 78533813 78534183 + 1 NA Intergenic Tigger3|DNA|TcMar-Tigger -11533 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 166.667-13 chr13 24135130 24135354 + 1 NA intron (NM_001286792, intron 3 of 14) intron (NM_001286792, intron 3 of 14) -25478 NM_001166271 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 322.333-3 chr21 27235986 27236392 + 1 NA Intergenic Intergenic -269101 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 220.667-36 chr6 71383766 71384072 + 1 NA Intergenic Intergenic -6888 NR_029598 407032 NR_029598 ENSG00000199094 MIR30C2 MIRN30C2|mir-30c-2 microRNA 30c-2 ncRNA 269.5-6 chr14 67733617 67734226 + 1 NA 3' UTR (NM_152443, exon 9 of 9) 3' UTR (NM_152443, exon 9 of 9) 32035 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 150.333-100 chr8 56339058 56339334 + 1 NA Intergenic MIRb|SINE|MIR -18420 NM_001318050 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 210.333-26 chr4 31626157 31626924 + 1 NA Intergenic Intergenic 119996 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 302.667-3 chr1 200575984 200576597 + 1 NA intron (NM_014875, intron 21 of 29) AluY|SINE|Alu 42548 NM_001305792 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MCPH20|MKS12 kinesin family member 14 protein-coding 287.333-13 chr7 84492161 84492543 + 1 NA Intergenic Intergenic -40124 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 337.667 chr1 75740634 75741311 + 1 NA intron (NM_001286042, intron 6 of 10) L3|LINE|CR1 4041 NR_130749 1744 Hs.525459 NR_130749 DLSTP1 DLSTP dihydrolipoamide S-succinyltransferase pseudogene 1 pseudo 174.667-70 chr8 129222575 129222996 + 1 NA intron (NR_033916, intron 2 of 2) L1MC3|LINE|L1 18455 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 150.5-80 chr8 115430731 115430958 + 1 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 237169 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 198.333-2 chr1 199112065 199112524 + 1 NA Intergenic Intergenic -36304 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 317.667 chr10 15751496 15751813 + 1 NA Intergenic Intergenic -31319 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 243.333-20 chr7 83816775 83817217 + 1 NA Intergenic L2a|LINE|L2 -167857 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 272.833-2 chr10 57173344 57173901 + 1 NA Intergenic Intergenic 130937 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 140.5-49 chr4 45115682 45115872 + 1 NA Intergenic Intergenic -389143 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 228.667-5 chr1 168443894 168444142 + 1 NA Intergenic Intergenic -21362 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 280.333-17 chr8 107300437 107300776 + 1 NA intron (NM_001199859, intron 5 of 8) intron (NM_001199859, intron 5 of 8) 35909 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 401.333-2 chr10 57632331 57633028 + 1 NA Intergenic L1MC4a|LINE|L1 -328120 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 210.333-13 chr15 81841466 81841740 + 1 NA Intergenic MIRb|SINE|MIR 204415 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 151.5-24 chr14 84153441 84153614 + 1 NA Intergenic Intergenic -1118405 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 191.5-45 chr6 103065526 103065826 + 1 NA Intergenic L1MA4|LINE|L1 1666691 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 377.5-2 chr3 79715067 79715616 + 1 NA intron (NM_002941, intron 1 of 30) Tigger1|DNA|TcMar-Tigger 52657 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 145.833-39 chr2 37499710 37499992 + 1 NA Intergenic Intergenic 155221 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 116.5-65 chr4 157104418 157104587 + 1 NA intron (NM_000824, intron 2 of 9) L1MB1|LINE|L1 28099 NM_001166060 2743 Hs.32973 NM_000824 ENSG00000109738 GLRB HKPX2 glycine receptor beta protein-coding 246.333-20 chr6 12003717 12004065 + 1 NA Intergenic L1MD3|LINE|L1 -2647 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 216.667-42 chr6 120048701 120049211 + 1 NA Intergenic L1MC3|LINE|L1 33777 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 227.667-32 chr9 128197626 128197899 + 1 NA intron (NM_012127, intron 1 of 16) intron (NM_012127, intron 1 of 16) -5617 NM_001288738 1759 Hs.522413 NM_004408 ENSG00000106976 DNM1 DNM|EIEE31 dynamin 1 protein-coding 282.667-8 chr14 54358175 54358803 + 1 NA Intergenic L1MA8|LINE|L1 -38379 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 215.5-9 chr11 97719098 97719323 + 1 NA Intergenic L1MB7|LINE|L1 1210785 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 255.167-11 chrX 40351317 40351966 + 1 NA Intergenic L1M4|LINE|L1 88724 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 131.333-39 chr18 43786018 43786230 + 1 NA Intergenic L2c|LINE|L2 -508634 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 165.5-33 chr2 31533561 31533835 + 1 NA exon (NM_000348, exon 2 of 5) exon (NM_000348, exon 2 of 5) 47240 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 199.667-33 chr2 200075586 200075893 + 1 NA Intergenic L2b|LINE|L2 -120248 NR_109905 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 201.5-37 chr8 113823440 113823765 + 1 NA Intergenic Intergenic -386663 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 211.667-24 chr22 27009433 27009802 + 1 NA Intergenic L2a|LINE|L2 50901 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 255.667-20 chr7 92984130 92984498 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR 133665 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 255.5-16 chr4 92402997 92403386 + 1 NA intron (NM_001286838, intron 1 of 14) Tigger1|DNA|TcMar-Tigger 98792 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 188.833-22 chr2 154238742 154239034 + 1 NA intron (NM_052917, intron 4 of 12) L1MA9|LINE|L1 218550 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 169.833-23 chr3 155420712 155421080 + 1 NA Intergenic Intergenic -64907 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 229.333-29 chr6 98955334 98955712 + 1 NA Intergenic Intergenic -7517 NM_012160 26235 Hs.536850 NM_012160 ENSG00000112234 FBXL4 FBL4|FBL5|MTDPS13 F-box and leucine rich repeat protein 4 protein-coding 195.667-44 chr8 114249820 114250112 + 1 NA Intergenic Intergenic -813027 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 194.333-40 chr7 125669015 125669420 + 1 NA Intergenic Intergenic -404926 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 211.667-19 chr2 26603236 26603681 + 1 NA intron (NM_001029881, intron 3 of 6) L1MD3|LINE|L1 37908 NM_001029881 130106 Hs.591579 NM_001029881 ENSG00000157884 CIB4 KIP4 calcium and integrin binding family member 4 protein-coding 190.667-37 chr4 32752087 32752343 + 1 NA Intergenic Intergenic 401177 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 147.5-37 chr17 67931458 67931717 + 1 NA intron (NM_182641, intron 17 of 27) intron (NM_182641, intron 17 of 27) 62019 NM_181656 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 114.833-16 chr13 69069428 69069581 + 1 NA Intergenic Intergenic -152842 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 277.667-17 chr8 82427069 82427604 + 1 NA Intergenic Intergenic -484768 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 243.667-17 chr18 22483785 22484108 + 1 NA Intergenic L1ME4a|LINE|L1 -66031 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 239.667-7 chr13 77466620 77466979 + 1 NA Intergenic Intergenic -68875 NM_001160706 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 278.333-10 chr3 46259369 46259787 + 1 NA intron (NM_178329, intron 1 of 1) MER31-int|LTR|ERV1 17118 NM_001164680 1232 Hs.506190 NM_001837 ENSG00000183625 CCR3 CC-CKR-3|CD193|CKR3|CMKBR3 C-C motif chemokine receptor 3 protein-coding 154.167-58 chr6 78217403 78217743 + 1 NA Intergenic Intergenic 321736 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 251.5-6 chr14 59340588 59340874 + 1 NA intron (NM_001270520, intron 16 of 24) intron (NM_001270520, intron 16 of 24) 77290 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 182.333-35 chr2 112020118 112020350 + 1 NA intron (NM_006343, intron 16 of 18) intron (NM_006343, intron 16 of 18) -35035 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 141.333-82 chr6 6045515 6045723 + 1 NA Intergenic Intergenic -38014 NM_001278710 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 201.5-9 chr13 69830807 69831187 + 1 NA intron (NM_001286725, intron 5 of 9) L1PB1|LINE|L1 -276216 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 176.667-44 chr20 57837558 57837891 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -126188 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 186.667-77 chr7 123502680 123502992 + 1 NA intron (NR_104245, intron 5 of 11) intron (NR_104245, intron 5 of 11) 30112 NR_104244 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 158.5-50 chr3 12115182 12115461 + 1 NA intron (NM_133625, intron 1 of 12) intron (NM_133625, intron 1 of 12) 43591 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 147.833-24 chr16 51872509 51872814 + 1 NA Intergenic Intergenic 110142 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 122.5-71 chr5 87114727 87114874 + 1 NA TTS (NR_036243) TTS (NR_036243) 154 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 153.333-55 chr3 174040428 174040649 + 1 NA intron (NM_001365928, intron 4 of 6) L1M5|LINE|L1 -119742 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 132.333-56 chr2 101323429 101323584 + 1 NA Intergenic L1M4|LINE|L1 14056 NR_049881 100847007 NR_049881 ENSG00000264857 MIR5696 - microRNA 5696 ncRNA 282.5-9 chr7 38084076 38084701 + 1 NA Intergenic Intergenic -93857 NM_001363347 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 175.833-39 chr7 32048838 32049070 + 1 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 21453 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 194.167-11 chr12 77086921 77087215 + 1 NA Intergenic L1ME1|LINE|L1 -21499 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 125.333-97 chr5 125766801 125766962 + 1 NA Intergenic L1MA5|LINE|L1 273620 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 171.333-6 chr1 109573684 109573898 + 1 NA intron (NM_006496, intron 2 of 8) intron (NM_006496, intron 2 of 8) -25102 NR_029583 406974 NR_029583 ENSG00000284443 MIR197 MIRN197|miR-197|miRNA197 microRNA 197 ncRNA 174.5-57 chr9 118672176 118672430 + 1 NA Intergenic Intergenic -7368 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 219.5-29 chr4 69547531 69547953 + 1 NA Intergenic Intergenic -21728 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 234.667-28 chr5 150644844 150645281 + 1 NA intron (NM_001109974, intron 1 of 1) intron (NM_001109974, intron 1 of 1) 4402 NM_001109974 11346 Hs.435228 NM_007286 ENSG00000171992 SYNPO - synaptopodin protein-coding 216.667-12 chr13 86860664 86861019 + 1 NA Intergenic L1MB8|LINE|L1 -51079 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 305.333-6 chr2 21031181 21031567 + 1 NA intron (NM_000384, intron 10 of 28) L1PB4|LINE|L1 12699 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 134.667-82 chr5 26635171 26635370 + 1 NA Intergenic L1MEd|LINE|L1 403316 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 195.333-19 chr2 22646915 22647201 + 1 NA Intergenic L1MEf|LINE|L1 110579 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 303.333-12 chr6 51479097 51479767 + 1 NA Intergenic Intergenic -142438 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 119.667-50 chr2 161447009 161447199 + 1 NA Intergenic Intergenic 30807 NM_006593 10716 Hs.210862 NM_006593 ENSG00000136535 TBR1 IDDAS|TBR-1|TES-56 T-box brain transcription factor 1 protein-coding 259.667-13 chr2 47958071 47958593 + 1 NA Intergenic L1MA1|LINE|L1 -52539 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 208.667-6 chr1 246426586 246426857 + 1 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) -9309 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 128.5-29 chr17 10507930 10508147 + 1 NA intron (NM_005963, intron 16 of 39) AluSq|SINE|Alu 10504 NM_005963 4619 Hs.689619 NM_005963 ENSG00000109061 MYH1 HEL71|MYHSA1|MYHa|MyHC-2X/D|MyHC-2x myosin heavy chain 1 protein-coding 339.5-8 chr8 15344824 15345271 + 1 NA Intergenic Intergenic -106616 NM_001322881 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 139.667-45 chr18 60338933 60339102 + 1 NA Intergenic L1MB5|LINE|L1 33758 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 204.167 chr1 91121403 91121712 + 1 NA Intergenic Intergenic -99302 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 149.833-13 chr2 8351440 8351786 + 1 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -23194 NR_034135 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 307.667-9 chr21 25747337 25747732 + 1 NA intron (NM_001197297, intron 3 of 9) intron (NM_001197297, intron 3 of 9) -11880 NM_001003697 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 226.333 chr1 81467295 81467699 + 1 NA intron (NM_001366008, intron 2 of 26) intron (NM_001366008, intron 2 of 26) 90205 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 220.167-28 chr7 65337571 65338021 + 1 NA Intergenic THE1D-int|LTR|ERVL-MaLR -36003 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 243.833-7 chr12 84998947 84999363 + 1 NA Intergenic MER21C|LTR|ERVL 37122 NM_001100917 144448 Hs.156962 NM_001100917 ENSG00000231738 TSPAN19 - tetraspanin 19 protein-coding 214.333-39 chr5 147530201 147530703 + 1 NA Intergenic L2b|LINE|L2 -20384 NM_001197294 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 148.333-16 chr11 58334549 58334779 + 1 NA Intergenic L1M4c|LINE|L1 24405 NM_001005489 219965 NM_001005489 ENSG00000197786 OR5B17 OR11-237|OR5B20P olfactory receptor family 5 subfamily B member 17 protein-coding 219.333-13 chr14 60511577 60511842 + 1 NA 3' UTR (NM_007374, exon 2 of 2) 3' UTR (NM_007374, exon 2 of 2) 2563 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 214.833-25 chr8 128991239 128991644 + 1 NA Intergenic Intergenic -25440 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 255.667-16 chr2 154338088 154338416 + 1 NA intron (NM_052917, intron 9 of 12) intron (NM_052917, intron 9 of 12) 119186 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 194.833-22 chr4 129937676 129938010 + 1 NA intron (NR_151713, intron 13 of 16) intron (NR_151713, intron 13 of 16) 166224 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 144.167-53 chr4 48602534 48602789 + 1 NA intron (NM_015030, intron 12 of 63) intron (NM_015030, intron 12 of 63) 112409 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 168.333-46 chr7 24961600 24961823 + 1 NA intron (NM_015550, intron 1 of 22) MLT1A0|LTR|ERVL-MaLR 18467 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 188.667-63 chr8 66063778 66064109 + 1 NA intron (NR_146171, intron 4 of 6) L2|LINE|L2 42390 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 138.333-23 chr12 51017094 51017333 + 1 NA intron (NM_001174125, intron 1 of 15) L1ME4b|LINE|L1 -7998 NM_001174130 4891 Hs.505545 NM_000617 ENSG00000110911 SLC11A2 AHMIO1|DCT1|DMT1|NRAMP2 solute carrier family 11 member 2 protein-coding 144.667-12 chr1 217295964 217296171 + 1 NA Intergenic L2b|LINE|L2 -158365 NM_001243511 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 130.5-54 chr3 163164003 163164215 + 1 NA Intergenic L1MA1|LINE|L1 139192 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 175.333-27 chr2 125833975 125834170 + 1 NA Intergenic Intergenic 283913 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 183.667-53 chr4 39842412 39842742 + 1 NA intron (NM_001100399, intron 30 of 32) intron (NM_001100399, intron 30 of 32) 135334 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 222.333-28 chr5 104304022 104304316 + 1 NA Intergenic Intergenic -741380 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 418.5 chr15 63201423 63201963 + 1 NA intron (NM_016530, intron 1 of 7) MIRc|SINE|MIR 12087 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 166.667-39 chr4 122260244 122260569 + 1 NA intron (NM_015312, intron 40 of 83) L1ME4b|LINE|L1 89803 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 253.5-8 chr12 27025664 27026306 + 1 NA intron (NR_073464, intron 1 of 3) intron (NR_073464, intron 1 of 3) 3427 NM_004264 9412 Hs.286145 NM_004264 ENSG00000152944 MED21 SRB7|SURB7|hSrb7 mediator complex subunit 21 protein-coding 214.333-12 chr12 72580095 72580428 + 1 NA intron (NM_013381, intron 12 of 18) intron (NM_013381, intron 12 of 18) -306752 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 233.5-24 chr7 48896547 48896942 + 1 NA Intergenic Intergenic -27803 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 202.667-20 chr2 7256532 7256971 + 1 NA Intergenic Intergenic -164510 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 171.167-38 chr4 65734268 65734599 + 1 NA Intergenic Intergenic -63938 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 127.167-33 chr14 81602776 81603039 + 1 NA Intergenic Intergenic 20154 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 220.333-10 chr16 59797576 59798115 + 1 NA Intergenic Intergenic -42654 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 370.667 chr1 222590268 222590658 + 1 NA promoter-TSS (NM_005681) promoter-TSS (NM_005681) 504 NR_110614 100506161 Hs.553851 NR_110613 ENSG00000225265 TAF1A-AS1 - TAF1A antisense RNA 1 ncRNA 189.333-15 chr15 65592112 65592423 + 1 NA intron (NR_045106, intron 8 of 11) intron (NR_045106, intron 8 of 11) 18864 NM_001366364 81556 Hs.6686 NM_030800 ENSG00000138614 INTS14 C15orf44|VWA9 integrator complex subunit 14 protein-coding 132.833-14 chr11 43837940 43838196 + 1 NA intron (NM_016142, intron 7 of 10) intron (NM_016142, intron 7 of 10) -42763 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 173.667-41 chr3 184258670 184259061 + 1 NA TTS (NM_032331) TTS (NM_032331) 2688 NM_033259 94032 Hs.585003 NM_033259 ENSG00000163888 CAMK2N2 CAM-KIIN|CAMKIIN calcium/calmodulin dependent protein kinase II inhibitor 2 protein-coding 207.667-23 chr2 207864079 207864372 + 1 NA intron (NM_001080475, intron 6 of 7) intron (NM_001080475, intron 6 of 7) -94319 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 164.5-12 chr11 75137115 75137441 + 1 NA Intergenic L2c|LINE|L2 -13829 NM_001145212 11309 Hs.7884 NM_007256 ENSG00000137491 SLCO2B1 OATP-B|OATP2B1|OATPB|SLC21A9 solute carrier organic anion transporter family member 2B1 protein-coding 245.667-14 chr2 17501722 17502104 + 1 NA Intergenic Intergenic 16527 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 193.5-35 chr3 152164862 152165224 + 1 NA intron (NR_136178, intron 2 of 2) L1MD3|LINE|L1 40386 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 149.333-49 chr2 62224226 62224431 + 1 NA 3' UTR (NM_001319075, exon 2 of 2) 3' UTR (NM_001319075, exon 2 of 2) 8807 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 168.333-58 chr8 117474249 117474714 + 1 NA Intergenic Intergenic -46232 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 137.667-69 chr3 116641735 116641919 + 1 NA Intergenic Intergenic -67961 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 132.333-36 chr13 68606865 68607016 + 1 NA Intergenic Intergenic 278385 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 181.667-45 chr4 61805780 61805989 + 1 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 355881 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 218.667-8 chr11 111438704 111439096 + 1 NA Intergenic Intergenic -20714 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 129.333-62 chr3 107034123 107034315 + 1 NA Intergenic L1ME1|LINE|L1 206419 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 125.167-3 chr1 170258278 170258685 + 1 NA Intergenic Intergenic 25727 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 298.5-12 chr3 30813693 30814069 + 1 NA intron (NM_207359, intron 11 of 14) intron (NM_207359, intron 11 of 14) 80780 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 274.5-4 chr15 76954798 76955169 + 1 NA TTS (NM_002902) TTS (NM_002902) 23234 NM_002902 5955 Hs.79088 NM_002902 ENSG00000117906 RCN2 E6BP|ERC-55|ERC55|TCBP49 reticulocalbin 2 protein-coding 201.333-29 chr4 111068145 111068521 + 1 NA Intergenic Intergenic -207686 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 262.667-14 chr18 70653782 70654245 + 1 NA Intergenic Intergenic -3059 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 281.667-12 chr4 90906348 90906867 + 1 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 671576 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 233.667-16 chr3 82246001 82246433 + 1 NA intron (NR_147146, intron 3 of 8) L1MA10|LINE|L1 260075 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 207.333-51 chr7 68489103 68489324 + 1 NA Intergenic AluSz|SINE|Alu 468960 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 175.667-39 chr22 48480753 48480970 + 1 NA Intergenic L1ME1|LINE|L1 -8692 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 174.667-76 chrX 38287729 38287919 + 1 NA intron (NR_159806, intron 13 of 17) intron (NR_159806, intron 13 of 17) 39128 NR_159808 6103 Hs.61438 NM_000328 ENSG00000156313 RPGR COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15 retinitis pigmentosa GTPase regulator protein-coding 152.667-57 chr3 83652980 83653266 + 1 NA Intergenic Intergenic 1216452 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 148.5-52 chr3 191763910 191764125 + 1 NA Intergenic L1MA1|LINE|L1 302854 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 164.333-4 chr1 200566834 200567022 + 1 NA intron (NM_014875, intron 23 of 29) AluSq2|SINE|Alu 51910 NM_001305792 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MCPH20|MKS12 kinesin family member 14 protein-coding 315.667-6 chr17 56128970 56129344 + 1 NA Intergenic Intergenic -24318 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 261.833-12 chr4 35474353 35475176 + 1 NA Intergenic Intergenic 769175 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 174.667-58 chr6 52399167 52399520 + 1 NA intron (NM_133367, intron 1 of 1) intron (NM_133367, intron 1 of 1) -20999 NR_033327 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 211.5-6 chr11 13952717 13953470 + 1 NA Intergenic Intergenic -9630 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 144.5-51 chr20 36246849 36247108 + 1 NA intron (NM_015511, intron 3 of 3) L2c|LINE|L2 10500 NM_001271874 25980 Hs.11314 NM_015511 ENSG00000131043 AAR2 C20orf4|CGI-23 AAR2 splicing factor protein-coding 116.333-80 chr5 42803094 42803261 + 1 NA TTS (NM_001134848) TTS (NM_001134848) 8715 NM_005410 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 214.667-43 chr9 27899185 27899463 + 1 NA Intergenic Intergenic -325458 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 258.333-10 chr12 97933096 97933397 + 1 NA Intergenic Intergenic 5875 NR_039716 100616287 NR_039716 ENSG00000265861 MIR4495 - microRNA 4495 ncRNA 161.333-7 chr10 70619104 70619307 + 1 NA Intergenic Intergenic -16417 NM_005041 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 191.5-30 chr22 33334478 33334740 + 1 NA intron (NM_133642, intron 10 of 14) L2a|LINE|L2 102060 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 138.167-16 chr12 90293129 90293424 + 1 NA promoter-TSS (NR_135018) promoter-TSS (NR_135018) -42 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 226.5-19 chr2 105872309 105872694 + 1 NA intron (NM_001004722, intron 3 of 3) intron (NM_001004722, intron 3 of 3) 20654 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 187.5-35 chr4 48932017 48932283 + 1 NA Intergenic AluSz|SINE|Alu -25322 NM_152398 132299 Hs.95835 NM_152398 ENSG00000145247 OCIAD2 - OCIA domain containing 2 protein-coding 374.167-2 chr10 53334130 53334537 + 1 NA Intergenic Intergenic -562633 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 152.333-17 chr14 63958032 63958336 + 1 NA intron (NM_015180, intron 8 of 114) L1MC3|LINE|L1 105180 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 224.5-16 chr22 40848332 40849013 + 1 NA intron (NM_003932, intron 2 of 11) AluSz|SINE|Alu 7967 NM_003932 6767 Hs.712713 NM_003932 ENSG00000100380 ST13 AAG2|FAM10A1|FAM10A4|HIP|HOP|HSPABP|HSPABP1|P48|PRO0786|SNC6 ST13 Hsp70 interacting protein protein-coding 160.5-19 chr17 18354622 18354851 + 1 NA intron (NM_004169, intron 2 of 11).2 intron (NM_004169, intron 2 of 11).2 8814 NM_004169 6470 Hs.513987 NM_004169 ENSG00000176974 SHMT1 CSHMT|SHMT serine hydroxymethyltransferase 1 protein-coding 282.167-10 chr2 157353827 157354278 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -26340 NM_001009959 57471 Hs.443894 NM_020711 ENSG00000136541 ERMN JN|KIAA1189 ermin protein-coding 262.833-13 chr8 89975956 89976421 + 1 NA intron (NM_001024688, intron 6 of 16) AluSx1|SINE|Alu 8483 NM_002485 4683 Hs.492208 NM_002485 ENSG00000104320 NBN AT-V1|AT-V2|ATV|NBS|NBS1|P95 nibrin protein-coding 221.667-29 chr5 18846329 18846582 + 1 NA Intergenic Intergenic 1039181 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 128.333-125 chr9 120820127 120820330 + 1 NA intron (NM_001270427, intron 8 of 8) L2a|LINE|L2 22694 NM_005047 5711 Hs.193725 NM_005047 ENSG00000095261 PSMD5 S5B proteasome 26S subunit, non-ATPase 5 protein-coding 208.5-32 chr3 174955180 174955493 + 1 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 96002 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 119.667-10 chr10 89857495 89857681 + 1 NA intron (NR_149080, intron 1 of 1) intron (NR_149080, intron 1 of 1) 3682 NR_149080 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 127.667-80 chr6 80787408 80787783 + 1 NA Intergenic Intergenic 680924 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 203.5-41 chr8 23915007 23915499 + 1 NA Intergenic Intergenic -60447 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 213.5-9 chr17 64056266 64056669 + 1 NA intron (NM_001433, intron 12 of 21) intron (NM_001433, intron 12 of 21) -35833 NM_001099787 3384 Hs.431460 NM_000873 ENSG00000108622 ICAM2 CD102 intercellular adhesion molecule 2 protein-coding 194.167-28 chr5 132099484 132099825 + 1 NA Intergenic L2-1_AMi|LINE|L2 25865 NM_000758 1437 Hs.1349 NM_000758 ENSG00000164400 CSF2 CSF|GMCSF colony stimulating factor 2 protein-coding 195.167-22 chr21 29409409 29409653 + 1 NA Intergenic L2a|LINE|L2 37030 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 250.5-9 chr2 62525630 62525997 + 1 NA Intergenic Intergenic -19618 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 146.5 chr1 52892098 52892259 + 1 NA intron (NM_001307931, intron 12 of 12) AluY|SINE|Alu 29562 NM_001198961 55268 Hs.476319 NM_018281 ENSG00000121310 ECHDC2 - enoyl-CoA hydratase domain containing 2 protein-coding 157.667-43 chr21 28401952 28402282 + 1 NA Intergenic Intergenic -137201 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 146.5-95 chr8 137463829 137464218 + 1 NA Intergenic L2a|LINE|L2 -50435 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 136.5-76 chr5 147129470 147129703 + 1 NA Intergenic L1M2|LINE|L1 -48066 NM_001271900 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 200.167-35 chr4 47137372 47137595 + 1 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 105916 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 186.333-3 chr1 69335221 69335589 + 1 NA Intergenic Intergenic -97850 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 189.333-52 chr8 50552680 50552925 + 1 NA intron (NR_135797, intron 11 of 20) intron (NR_135797, intron 11 of 20) 388671 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 173.667-21 chr15 57002048 57002329 + 1 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 82743 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 152.5 chr1 73251848 73252180 + 1 NA Intergenic Intergenic -54156 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 236.167-7 chr14 53147418 53147824 + 1 NA intron (NM_030637, intron 1 of 11) intron (NM_030637, intron 1 of 11) 5702 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 231.333-35 chr8 140420226 140420546 + 1 NA intron (NM_001321646, intron 4 of 21) L1MB8|LINE|L1 37358 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 158.667-68 chr5 16319843 16320026 + 1 NA Intergenic L1ME3A|LINE|L1 121168 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 262.5-24 chr8 116580800 116581284 + 1 NA Intergenic Intergenic -71058 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 338.833-2 chr3 180417131 180417506 + 1 NA intron (NR_132416, intron 1 of 1) intron (NR_132416, intron 1 of 1) 3145 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 254.5-14 chr5 133018465 133018981 + 1 NA intron (NR_131766, intron 1 of 4) LTR37A|LTR|ERV1 7826 NR_131767 54819 Hs.29700 NM_017665 ENSG00000155329 ZCCHC10 - zinc finger CCHC-type containing 10 protein-coding 317.333 chr1 43511995 43512360 + 1 NA Intergenic LTR106_Mam|LTR|LTR -13860 NM_001329137 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 233.333-37 chr5 115621334 115621866 + 1 NA intron (NM_001164469, intron 1 of 3) intron (NM_001164469, intron 1 of 3) 4436 NM_001164468 100302736 NM_001164468 ENSG00000251201 TMED7-TICAM2 MyD88-4|TICAM-2|TICAM2|TIRAP3|TIRP|TRAM TMED7-TICAM2 readthrough protein-coding 118.667-40 chr17 32827836 32827986 + 1 NA intron (NM_015194, intron 1 of 21) intron (NM_015194, intron 1 of 21) 49213 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 199.833-3 chr10 86934788 86935238 + 1 NA TTS (NM_024756) TTS (NM_024756) -20746 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 207.667-20 chr18 42550496 42550803 + 1 NA intron (NR_046174, intron 6 of 9) L1MCb|LINE|L1 363981 NR_046174 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 238.667-31 chr7 19362084 19362525 + 1 NA Intergenic MLT1N2|LTR|ERVL-MaLR -216883 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 152.333-56 chr6 51567054 51567244 + 1 NA Intergenic Intergenic -54721 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 256.667-27 chr8 117395287 117395702 + 1 NA Intergenic MER5A1|DNA|hAT-Charlie -125219 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 218.667-21 chr20 2592203 2592472 + 1 NA exon (NM_080751, exon 8 of 20) exon (NM_080751, exon 8 of 20) 55730 NM_080751 117532 Hs.352626 NM_080751 ENSG00000149488 TMC2 C20orf145 transmembrane channel like 2 protein-coding 204.333-50 chr7 64269670 64270029 + 1 NA Intergenic Intergenic 41375 NM_153363 168417 Hs.520884 NM_153363 ENSG00000197123 ZNF679 - zinc finger protein 679 protein-coding 172.833-13 chr14 73995464 73996015 + 1 NA intron (NM_001249, intron 3 of 15) intron (NM_001249, intron 3 of 15) 23549 NM_001330189 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 132.5-14 chr12 16383736 16384051 + 1 NA Intergenic Intergenic 30476 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 259.833 chr1 87135330 87135661 + 1 NA non-coding (NR_026988, exon 3 of 3) non-coding (NR_026988, exon 3 of 3) 3569 NR_026985 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 171.333-37 chr2 200817455 200817782 + 1 NA intron (NM_001207067, intron 6 of 11) intron (NM_001207067, intron 6 of 11) 5232 NM_001207068 9689 Hs.355983 NM_014670 ENSG00000082153 BZW1 BZAP45|Nbla10236 basic leucine zipper and W2 domains 1 protein-coding 135.667-47 chr18 49397135 49397329 + 1 NA intron (NM_001353210, intron 2 of 16) intron (NM_001353210, intron 2 of 16) 63413 NM_017653 54808 Hs.162996 NM_017653 ENSG00000141627 DYM DMC|SMC dymeclin protein-coding 283.333-2 chr14 59339634 59339988 + 1 NA intron (NM_014992, intron 15 of 24) intron (NM_014992, intron 15 of 24) 76370 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 143.667 chr1 8960314 8960522 + 1 NA intron (NM_001270501, intron 3 of 6) L1M4a1|LINE|L1 14550 NM_001215 765 Hs.100322 NM_001215 ENSG00000131686 CA6 CA-VI|GUSTIN carbonic anhydrase 6 protein-coding 156.667-8 chr1 162854698 162855073 + 1 NA exon (NM_178550, exon 4 of 4) exon (NM_178550, exon 4 of 4) 13930 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 168.5-52 chr5 84102972 84103164 + 1 NA intron (NM_001278642, intron 5 of 9) L1PREC2|LINE|L1 281799 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 174.5-43 chr6 162699281 162699584 + 1 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -27700 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 179.667 chr1 174799064 174799351 + 1 NA promoter-TSS (NM_001243765) promoter-TSS (NM_001243765) -531 NM_001366456 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 167.667-68 chr4 136813840 136814072 + 1 NA intron (NR_149105, intron 3 of 3) intron (NR_149105, intron 3 of 3) -379800 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 174.333-20 chr15 69765054 69765260 + 1 NA Intergenic Intergenic -70077 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 145.5-88 chr9 86041323 86041507 + 1 NA intron (NM_016548, intron 5 of 9) MER21C|LTR|ERVL 58143 NM_016548 51280 Hs.494337 NM_016548 ENSG00000135052 GOLM1 C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3 golgi membrane protein 1 protein-coding 292.667-11 chr20 9152351 9152826 + 1 NA intron (NM_001172646, intron 1 of 37) THE1A-int|LTR|ERVL-MaLR -64802 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 204.667-19 chr13 33408286 33408637 + 1 NA intron (NM_001243476, intron 5 of 17) L1MB2|LINE|L1 -73195 NR_146541 105370154 NR_146541 LINC02344 - long intergenic non-protein coding RNA 2344 ncRNA 136.5-33 chr14 62884787 62884960 + 1 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 160585 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 145.667-93 chr7 41731353 41731534 + 1 NA intron (NR_027118, intron 2 of 3) intron (NR_027118, intron 2 of 3) -28353 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 219.333-16 chr15 62494193 62494545 + 1 NA Intergenic Intergenic 150812 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 331.5-3 chr19 27962974 27963517 + 1 NA intron (NR_146734, intron 3 of 7) intron (NR_146734, intron 3 of 7) -169305 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 155.5-55 chr8 62368563 62368772 + 1 NA intron (NM_001304533, intron 1 of 6) MER65A|LTR|ERV1 119813 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 163.333-59 chr4 104341054 104341311 + 1 NA Intergenic Intergenic -149783 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 173.167 chr1 51832894 51833292 + 1 NA intron (NM_001101662, intron 4 of 30) L1ME4a|LINE|L1 3309 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 300.333 chr1 168464904 168465212 + 1 NA intron (NR_125956, intron 4 of 4) L1PA16|LINE|L1 30586 NR_125956 101928565 Hs.563806 NR_125956 ENSG00000228697 LOC101928565 - uncharacterized LOC101928565 ncRNA 212.5-8 chr15 68495388 68495734 + 1 NA Intergenic L1M2|LINE|L1 -22812 NM_001324014 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 212.833-20 chr5 51060490 51060929 + 1 NA Intergenic Intergenic -90522 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 190.333-56 chr8 57918081 57918492 + 1 NA Intergenic L1MEd|LINE|L1 -60072 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 181.333-8 chr10 100061327 100061516 + 1 NA intron (NM_001308, intron 5 of 8) MER5A|DNA|hAT-Charlie 20448 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 218.333-37 chr8 128399491 128399902 + 1 NA Intergenic MIR|SINE|MIR 164983 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 170.333-42 chr20 44375764 44376034 + 1 NA intron (NM_175914, intron 1 of 9) intron (NM_175914, intron 1 of 9) 19807 NR_109949 101927219 Hs.655919 NR_109949 ENSG00000229005 HNF4A-AS1 uc002xlx HNF4A antisense RNA 1 ncRNA 229.5-8 chr10 117129194 117129459 + 1 NA 3' UTR (NM_199131, exon 4 of 4) 3' UTR (NM_199131, exon 4 of 4) -2740 NM_001258300 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 334.667 chr1 208906209 208906579 + 1 NA Intergenic Intergenic -66060 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 266.667-27 chrX 58032458 58032973 + 1 NA Intergenic L1PA10|LINE|L1 -122082 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 116.667-57 chr2 107179085 107179220 + 1 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 170373 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 222.5 chr1 97550820 97551177 + 1 NA intron (NM_000110, intron 11 of 22) L2a|LINE|L2 -245923 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 212.667-26 chr2 189756295 189756660 + 1 NA intron (NM_022353, intron 2 of 8) intron (NM_022353, intron 2 of 8) -6303 NR_102429 101409258 Hs.738558 NR_102429 OSGEPL1-AS1 - OSGEPL1 antisense RNA 1 ncRNA 259.333-16 chr5 27498790 27499263 + 1 NA Intergenic Intergenic 26734 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 271.5-19 chr5 11847810 11848196 + 1 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 56443 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 363.667-6 chr8 105443469 105444098 + 1 NA intron (NM_001362837, intron 2 of 7) intron (NM_001362837, intron 2 of 7) 124240 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 170.5-36 chr2 209697516 209697839 + 1 NA intron (NM_001363910, intron 10 of 15) intron (NM_001363910, intron 10 of 15) -74155 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 154.333-73 chr8 34660996 34661198 + 1 NA Intergenic Intergenic -122824 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 259.333-7 chr14 48513597 48513926 + 1 NA Intergenic Intergenic -718747 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 248.667-9 chr12 116647885 116648687 + 1 NA Intergenic AluJr|SINE|Alu 88905 NM_001085481 643246 Hs.356061 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 292.833-4 chr10 99315043 99315505 + 1 NA Intergenic Charlie4a|DNA|hAT-Charlie -13825 NM_001345888 26507 Hs.274579 NM_020348 ENSG00000119946 CNNM1 ACDP1|CLP-1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding 170.667-18 chr14 67792562 67792799 + 1 NA intron (NM_015346, intron 14 of 41) AluSq2|SINE|Alu 23910 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 216.667-50 chr8 132183962 132184271 + 1 NA intron (NM_001204824, intron 3 of 14) intron (NM_001204824, intron 3 of 14) -78851 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 240.333-17 chr3 14210976 14211353 + 1 NA Intergenic Intergenic 32347 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 184.167-27 chr2 29002060 29002437 + 1 NA intron (NM_001321538, intron 4 of 18) MIRc|SINE|MIR 20950 NM_001321538 165186 Hs.525977 NM_199280 ENSG00000189350 TOGARAM2 FAM179A TOG array regulator of axonemal microtubules 2 protein-coding 228.333-22 chr4 100879597 100879863 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -204617 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 143.333-74 chr5 133079512 133079779 + 1 NA intron (NM_002154, intron 7 of 18) L1MB5|LINE|L1 27632 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 160.667-60 chr4 33546654 33546883 + 1 NA Intergenic Intergenic 493125 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 124.5-28 chr17 11524067 11524323 + 1 NA intron (NM_001173462, intron 3 of 4) intron (NM_001173462, intron 3 of 4) -74275 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 172.333-37 chr2 101769144 101769487 + 1 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 71608 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 147.5-40 chr19 50265892 50266084 + 1 NA intron (NM_024729, intron 20 of 40) intron (NM_024729, intron 20 of 40) 62360 NM_024729 79784 Hs.467142 NM_024729 ENSG00000105357 MYH14 DFNA4|DFNA4A|FP17425|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin myosin heavy chain 14 protein-coding 218.167-27 chr8 25246828 25247179 + 1 NA intron (NM_024940, intron 2 of 51) AluJr|SINE|Alu 62314 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 179.667-39 chr5 4335949 4336460 + 1 NA Intergenic Intergenic -437277 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 119.5-75 chr5 6050114 6050277 + 1 NA Intergenic L1M4a1|LINE|L1 287097 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 262.333-24 chr5 35620143 35620504 + 1 NA intron (NM_144722, intron 1 of 9) intron (NM_144722, intron 1 of 9) 2460 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 277.667-10 chr4 33318264 33318691 + 1 NA Intergenic Intergenic 721416 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 178.333-56 chr9 91428874 91429083 + 1 NA Intergenic Intergenic -4352 NM_001289999 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 282.5-3 chr12 40347144 40347601 + 1 NA intron (NM_198578, intron 42 of 50) intron (NM_198578, intron 42 of 50) -46022 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 163.5-33 chr2 53749156 53749429 + 1 NA intron (NM_001201965, intron 2 of 8) L1ME1|LINE|L1 -18491 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 170.167-49 chr7 43539127 43539328 + 1 NA intron (NM_001287059, intron 22 of 27) L1M5|LINE|L1 -16685 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 180.667-72 chr8 43709583 43709853 + 1 NA Intergenic ALR/Alpha|Satellite|centr 417276 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 115.833-28 chr16 77991289 77991572 + 1 NA Intergenic L1MC4|LINE|L1 -31118 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 246.333-4 chr11 108532415 108532777 + 1 NA intron (NM_015065, intron 3 of 5) intron (NM_015065, intron 3 of 5) 5581 NM_001144765 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 214.833-12 chr16 82342204 82342467 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -172111 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 283.167-11 chr7 137274381 137274927 + 1 NA intron (NM_001321387, intron 1 of 4) intron (NM_001321387, intron 1 of 4) -5799 NM_001321386 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 231.333-18 chr2 36724618 36724953 + 1 NA intron (NM_001177969, intron 2 of 14) intron (NM_001177969, intron 2 of 14) 28078 NM_001328661 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 324.333-3 chr14 44934656 44935133 + 1 NA intron (NM_017658, intron 2 of 4) L1ME3E|LINE|L1 -22977 NR_110050 101927418 Hs.144809 NR_110050 ENSG00000258949 LOC101927418 - uncharacterized LOC101927418 ncRNA 316.667 chr1 186933339 186933822 + 1 NA intron (NM_024420, intron 8 of 17) intron (NM_024420, intron 8 of 17) 104631 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 274.5-21 chr9 27464444 27464779 + 1 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -59703 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 273.667-22 chr9 73581377 73581811 + 1 NA Intergenic Intergenic 429729 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 278.667-8 chr18 53782429 53782871 + 1 NA Intergenic Intergenic -201591 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 280.667-12 chr2 114606625 114606985 + 1 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 145228 NM_001321905 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 236.5-34 chr9 28904608 28905111 + 1 NA intron (NM_001354574, intron 2 of 5) L1MA8|LINE|L1 -15904 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 139.5-62 chr6 113052923 113053171 + 1 NA Intergenic Intergenic 380400 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 219.667-13 chr18 65703693 65703990 + 1 NA Intergenic Intergenic -46411 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 206.5-39 chr8 138589983 138590392 + 1 NA intron (NM_152888, intron 64 of 64) intron (NM_152888, intron 64 of 64) -92457 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 284.667-9 chr2 65883586 65883925 + 1 NA Intergenic Intergenic -451156 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 167.333-30 chr2 36837197 36837525 + 1 NA TTS (NM_003162) TTS (NM_003162) 129175 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 281.5-11 chr8 25937904 25938322 + 1 NA intron (NM_022659, intron 6 of 15) intron (NM_022659, intron 6 of 15) 107300 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 123.5-6 chr1 102722867 102723100 + 1 NA Intergenic L1MD|LINE|L1 385513 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 230.667-32 chr8 28171243 28171635 + 1 NA intron (NM_018091, intron 14 of 14) L1MB4|LINE|L1 78300 NM_001284220 55140 Hs.491336 NM_018091 ENSG00000134014 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 225.333-8 chr14 66392352 66392603 + 1 NA Intergenic Intergenic -93894 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 123.333-61 chr2 187604752 187604903 + 1 NA Intergenic MER94|DNA|hAT-Blackjack -50322 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 147.333-29 chr15 49665213 49665433 + 1 NA Intergenic Intergenic 44275 NM_001144955 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 201.833-16 chr5 64982520 64982747 + 1 NA intron (NM_005869, intron 13 of 13) intron (NM_005869, intron 13 of 13) 213703 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 191.667-25 chr2 168808581 168808798 + 1 NA intron (NM_052946, intron 1 of 14) L1M5|LINE|L1 6092 NM_052946 115677 Hs.189780 NM_052946 ENSG00000163072 NOSTRIN DaIP2 nitric oxide synthase trafficking protein-coding 153.833-38 chr20 47293374 47293855 + 1 NA intron (NM_001281774, intron 6 of 23) intron (NM_001281774, intron 6 of 23) -24888 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 213.333-33 chr4 71414132 71414589 + 1 NA intron (NM_003759, intron 4 of 22) intron (NM_003759, intron 4 of 22) 75307 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 284.5-12 chr4 117432084 117432459 + 1 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 3873 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 367.333-5 chr8 69581527 69582102 + 1 NA intron (NR_156414, intron 5 of 20) intron (NR_156414, intron 5 of 20) -11086 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 201.667-52 chr9 25520533 25520846 + 1 NA Intergenic Intergenic 158169 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 173.5-54 chr8 59876578 59877027 + 1 NA Intergenic L1MA3|LINE|L1 404598 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 397.333-4 chr8 67832157 67832800 + 1 NA Intergenic Intergenic -86118 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 197.667-21 chr15 63720853 63721180 + 1 NA intron (NM_003922, intron 19 of 77) intron (NM_003922, intron 19 of 77) 112932 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 134.5-47 chr2 145334946 145335100 + 1 NA Intergenic Intergenic 667056 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 116.5-83 chr7 27327629 27327911 + 1 NA Intergenic AluSz|SINE|Alu -80541 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 199.833-15 chr17 72412675 72413056 + 1 NA intron (NR_036488, intron 3 of 3) intron (NR_036488, intron 3 of 3) 70054 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 120.333-59 chr2 172931205 172931397 + 1 NA intron (NM_001282901, intron 1 of 24) intron (NM_001282901, intron 1 of 24) 3096 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 151.333-70 chr5 22788519 22788708 + 1 NA intron (NM_004061, intron 1 of 14) (TA)n|Simple_repeat|Simple_repeat 64731 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 190.167-3 chr1 171545640 171546132 + 1 NA intron (NM_015172, intron 17 of 33) intron (NM_015172, intron 17 of 33) 60356 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 155.333-3 chr1 89722707 89722900 + 1 NA Intergenic Intergenic 89683 NM_032270 84230 Hs.412836 NM_032270 ENSG00000171488 LRRC8C AD158|FAD158 leucine rich repeat containing 8 VRAC subunit C protein-coding 297.167 chr11 23577163 23577793 + 1 NA Intergenic Intergenic -158288 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 170.333-60 chr6 43591171 43591422 + 1 NA intron (NM_006502, intron 4 of 10) intron (NM_006502, intron 4 of 10) 15111 NM_001291969 5429 Hs.655467 NM_006502 ENSG00000170734 POLH RAD30|RAD30A|XP-V|XPV DNA polymerase eta protein-coding 124.5-33 chr2 32864509 32864674 + 1 NA intron (NR_027098, intron 2 of 5) intron (NR_027098, intron 2 of 5) 39158 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 222.333-36 chr8 87615794 87616207 + 1 NA Intergenic Intergenic 258015 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 277.333-4 chr14 21045278 21045797 + 1 NA intron (NM_001282211, intron 1 of 14) intron (NM_001282211, intron 1 of 14) 3175 NM_032572 84659 Hs.525206 NM_032572 ENSG00000165799 RNASE7 RAE1 ribonuclease A family member 7 protein-coding 211.667-3 chr1 89101681 89102021 + 1 NA Intergenic Intergenic 24263 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 252.333-8 chr11 104826424 104826790 + 1 NA Intergenic Intergenic 72063 NR_034061 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 175.833-9 chr14 33357499 33357768 + 1 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) -351304 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 273.667-21 chr9 69741881 69742217 + 1 NA intron (NR_159517, intron 1 of 5) intron (NR_159517, intron 1 of 5) 17962 NM_001099666 375743 Hs.744192 NM_001099666 ENSG00000188647 PTAR1 - protein prenyltransferase alpha subunit repeat containing 1 protein-coding 225.667-2 chr1 179125914 179126181 + 1 NA intron (NM_007314, intron 4 of 11) intron (NM_007314, intron 4 of 11) 17029 NM_001168239 27 Hs.159472 NM_005158 ENSG00000143322 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding 149.333-78 chr5 148569582 148569793 + 1 NA intron (NM_001040172, intron 1 of 5) intron (NM_001040172, intron 1 of 5) 67374 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 271.333-9 chr2 14090823 14091331 + 1 NA Intergenic L2c|LINE|L2 309881 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 293.334 chr4 29376132 29376625 + 1 NA Intergenic Intergenic 162086 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 191.667-43 chr4 96166031 96166401 + 1 NA Intergenic Intergenic -144487 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 198.333-24 chr20 11216788 11217141 + 1 NA Intergenic Intergenic 56419 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 262.333-3 chr10 15991167 15991665 + 1 NA Intergenic L2a|LINE|L2 -130883 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 386.167 chr2 138000490 138001212 + 1 NA intron (NM_006895, intron 2 of 5) intron (NM_006895, intron 2 of 5) 36378 NM_006895 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 185.5-9 chr11 14472362 14472765 + 1 NA intron (NM_016451, intron 14 of 21) Tigger1|DNA|TcMar-Tigger 27295 NM_016451 1315 Hs.339278 NM_016451 ENSG00000129083 COPB1 COPB coatomer protein complex subunit beta 1 protein-coding 210.667-7 chr11 8179530 8179808 + 1 NA Intergenic ORSL|DNA|hAT-Tip100 -10644 NM_001346692 79608 Hs.231850 NM_024557 ENSG00000166405 RIC3 AYST720|PRO1385 RIC3 acetylcholine receptor chaperone protein-coding 223.5-4 chr10 75177864 75178157 + 1 NA 3' UTR (NM_144660, exon 5 of 5) 3' UTR (NM_144660, exon 5 of 5) -32144 NM_001184823 7417 Hs.355927 NM_003375 ENSG00000165637 VDAC2 POR voltage dependent anion channel 2 protein-coding 244.333-35 chr9 36672717 36673092 + 1 NA intron (NM_001256691, intron 14 of 15) intron (NM_001256691, intron 14 of 15) 100009 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 356.667-2 chr10 85810374 85811151 + 1 NA intron (NM_017551, intron 8 of 15) L1M2c|LINE|L1 233031 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 212.5-32 chr8 119996528 119996959 + 1 NA intron (NM_022783, intron 4 of 8) intron (NM_022783, intron 4 of 8) 123021 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 205.333-46 chr5 4588747 4589052 + 1 NA Intergenic Intergenic -184582 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 215.5-35 chr6 48639781 48640140 + 1 NA Intergenic Intergenic -571271 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 250.667-13 chr8 120929117 120929464 + 1 NA Intergenic MIRc|SINE|MIR -117244 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 285.5-6 chr13 62161884 62162403 + 1 NA Intergenic Intergenic -50139 NR_125787 103752583 Hs.578048 NR_125787 LINC01075 - long intergenic non-protein coding RNA 1075 ncRNA 164.667-17 chr12 16457434 16457739 + 1 NA Intergenic Intergenic 104169 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 211.5-8 chr12 91134228 91134534 + 1 NA Intergenic Intergenic -22887 NM_002345 4060 Hs.406475 NM_002345 ENSG00000139329 LUM LDC|SLRR2D lumican protein-coding 145.333-45 chr21 30662669 30662907 + 1 NA Intergenic LTR33|LTR|ERVL 19924 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 202.667-44 chr8 65021009 65021336 + 1 NA Intergenic L1MEc|LINE|L1 159168 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 156.5-25 chr12 43667584 43667838 + 1 NA Intergenic Intergenic 91079 NM_001098614 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 325.5 chr13 79147970 79148730 + 1 NA Intergenic Intergenic 257871 NM_001286631 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 176.5-66 chr8 106445121 106445549 + 1 NA intron (NM_018002, intron 2 of 15) intron (NM_018002, intron 2 of 15) -2589 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 217.667-54 chr9 91608764 91609141 + 1 NA Intergenic L1MEd|LINE|L1 -27299 NR_037472 100500821 NR_037472 ENSG00000266855 MIR3910-1 mir-3910-1 microRNA 3910-1 ncRNA 163.5-40 chr21 27101165 27101328 + 1 NA Intergenic Intergenic -134158 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 187.333-60 chr4 65331022 65331375 + 1 NA 3' UTR (NM_001281767, exon 17 of 17) 3' UTR (NM_001281767, exon 17 of 17) -326698 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 232.333-20 chr2 227256127 227256410 + 1 NA intron (NM_000091, intron 16 of 51) intron (NM_000091, intron 16 of 51) 68896 NR_102371 654841 Hs.659982 NR_102371 ENSG00000236432 LOC654841 - uncharacterized LOC654841 ncRNA 154.333-15 chr11 75862258 75862440 + 1 NA intron (NM_003369, intron 3 of 14) intron (NM_003369, intron 3 of 14) 47139 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 196.667-9 chr11 47156611 47156952 + 1 NA intron (NM_001003677, intron 5 of 8) L2a|LINE|L2 20098 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 206.5-24 chr5 2792103 2792435 + 1 NA Intergenic L1MEc|LINE|L1 40138 NM_001306150 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 135.333-78 chr7 91138457 91138620 + 1 NA intron (NM_012395, intron 13 of 13) intron (NM_012395, intron 13 of 13) -125895 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 213.5-21 chr2 170963878 170964240 + 1 NA intron (NM_001201428, intron 9 of 9) intron (NM_001201428, intron 9 of 9) 34806 NM_015530 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 237.5-13 chr2 161140545 161140936 + 1 NA intron (NM_004180, intron 1 of 7) L1M5|LINE|L1 3777 NM_004180 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 158.667-87 chr7 113296827 113297184 + 1 NA Intergenic L1MA4A|LINE|L1 -178423 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 258.5-16 chr5 100612058 100612453 + 1 NA Intergenic L1MEd|LINE|L1 76881 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 186.333-35 chr20 44850346 44850592 + 1 NA Intergenic L1ME3|LINE|L1 -35236 NM_139323 7529 Hs.643544 NM_003404 ENSG00000166913 YWHAB GW128|HEL-S-1|HS1|KCIP-1|YWHAA tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta protein-coding 248.833-2 chr10 12715253 12715595 + 1 NA intron (NM_001351032, intron 5 of 11) Tigger8|DNA|TcMar-Tigger 9929 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 248.833 chr1 151960882 151961247 + 1 NA Intergenic Intergenic 32795 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 218.5-19 chr2 136492037 136492287 + 1 NA Intergenic Intergenic -273383 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 137.667-98 chr9 78924222 78924459 + 1 NA Intergenic MER89-int|LTR|ERV1 221326 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 147.5-76 chr7 88786264 88786450 + 1 NA intron (NM_181646, intron 1 of 3) L2c|LINE|L2 9380 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 115.667-80 chr4 41779510 41779656 + 1 NA Intergenic Tigger2a|DNA|TcMar-Tigger -30613 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 237.333-21 chr2 187841737 187842171 + 1 NA Intergenic L1PA16|LINE|L1 -287449 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 136.667-84 chr5 144479824 144480004 + 1 NA 3' UTR (NM_020768, exon 4 of 4) 3' UTR (NM_020768, exon 4 of 4) 274523 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 148.333-29 chr13 74763267 74763458 + 1 NA Intergenic MIRb|SINE|MIR 210519 NR_034025 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 256.5-26 chr5 42728950 42729331 + 1 NA Intergenic Intergenic -27678 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 147.5-38 chr18 12821134 12821327 + 1 NA intron (NM_001207013, intron 5 of 10) MIR|SINE|MIR 19732 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 196.5-25 chr3 142042178 142042558 + 1 NA intron (NM_001178139, intron 3 of 12) AluSc|SINE|Alu -13742 NM_006286 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 242.333-6 chr18 7762644 7762995 + 1 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 195503 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 132.333-98 chr7 107177757 107178144 + 1 NA intron (NM_012257, intron 1 of 10).2 intron (NM_012257, intron 1 of 10).2 8947 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 197.667-54 chr7 53524788 53525230 + 1 NA Intergenic L1MCb|LINE|L1 286922 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 131.667-119 chr7 26421732 26421954 + 1 NA intron (NR_148500, intron 2 of 5) MSTB|LTR|ERVL-MaLR -22425 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 130.333-4 chr1 87533131 87533390 + 1 NA Intergenic Intergenic -161605 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 233.667-10 chr14 83319737 83320069 + 1 NA Intergenic Intergenic 677271 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 184.5-16 chr14 20036436 20036650 + 1 NA Intergenic Intergenic -1785 NM_001004714 390433 Hs.553573 NM_001004714 ENSG00000176253 OR4K13 OR14-27 olfactory receptor family 4 subfamily K member 13 protein-coding 253.167-14 chr7 38071591 38071944 + 1 NA Intergenic Intergenic -106478 NM_001363347 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 152.167-16 chr14 78856029 78856230 + 1 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -343853 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 119.333-67 chr3 184710086 184710232 + 1 NA TTS (NM_022149) TTS (NM_022149) 1905 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 MAGE-F1 MAGE family member F1 protein-coding 287.667-3 chr12 9698566 9699186 + 1 NA non-coding (NR_036693, exon 4 of 4) non-coding (NR_036693, exon 4 of 4) 29163 NM_001197319 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 220.667-19 chr2 184998684 184998946 + 1 NA Intergenic AluJr|SINE|Alu 168257 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 126.333-29 chr14 38802557 38802896 + 1 NA intron (NR_039982, intron 4 of 4) L1MA5|LINE|L1 -79870 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 181.333-49 chr6 8423693 8423898 + 1 NA intron (NM_001142540, intron 4 of 10) intron (NM_001142540, intron 4 of 10) 11750 NM_001370478 51000 Hs.285847 NM_015948 ENSG00000124786 SLC35B3 C6orf196|CGI-19|PAPST2 solute carrier family 35 member B3 protein-coding 131.667-96 chr5 25479276 25479465 + 1 NA Intergenic Intergenic 288417 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 249.833-8 chr18 1717612 1718106 + 1 NA Intergenic LTR108d_Mam|LTR|ERVL -358230 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 143.667-11 chr1 172685163 172685403 + 1 NA Intergenic Intergenic 26180 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 142.5-18 chr12 80057124 80057313 + 1 NA Intergenic Intergenic -42319 NM_001368062 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 145.333-10 chr10 43051295 43051454 + 1 NA Intergenic AluJb|SINE|Alu -25653 NM_020630 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 187.333 chr1 95142316 95142556 + 1 NA intron (NM_001199691, intron 1 of 7) MER51A|LTR|ERV1 24513 NM_001199691 100527978 Hs.483512 NM_001199691 ENSG00000271092 TLCD4-RWDD3 TMEM56-RWDD3 TLCD4-RWDD3 readthrough protein-coding 158.167-40 chr5 41906716 41906889 + 1 NA intron (NM_175921, intron 1 of 5) intron (NM_175921, intron 1 of 5) 2458 NM_175921 285636 Hs.29899 NM_175921 ENSG00000205765 C5orf51 - chromosome 5 open reading frame 51 protein-coding 262.667-21 chr2 220336217 220336569 + 1 NA Intergenic MIR|SINE|MIR -429828 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 357.5-4 chr5 129153863 129154529 + 1 NA Intergenic Intergenic 56508 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 124.667-42 chr15 80333812 80333990 + 1 NA intron (NR_033833, intron 1 of 2) intron (NR_033833, intron 1 of 2) 7904 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 124.5-58 chr5 29735932 29736127 + 1 NA Intergenic Intergenic -144531 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 237.5-6 chr12 23568439 23568801 + 1 NA intron (NM_152989, intron 13 of 17) L2|LINE|L2 15966 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 179.333-35 chr21 42637129 42637450 + 1 NA Intergenic Intergenic -16332 NM_002606 5152 Hs.473927 NM_002606 ENSG00000160191 PDE9A HSPDE9A2 phosphodiesterase 9A protein-coding 123.5-25 chr14 44914301 44914527 + 1 NA Intergenic Intergenic -2497 NR_110050 101927418 Hs.144809 NR_110050 ENSG00000258949 LOC101927418 - uncharacterized LOC101927418 ncRNA 204.333-44 chr5 101354009 101354334 + 1 NA Intergenic L1MC2|LINE|L1 -450889 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 268.5-8 chr2 142726959 142727550 + 1 NA Intergenic Intergenic -150410 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 183.667-79 chr8 37654719 37655050 + 1 NA Intergenic L1MB8|LINE|L1 -40898 NM_025069 80139 Hs.288042 NM_025069 ENSG00000183779 ZNF703 NLZ1|ZEPPO1|ZNF503L|ZPO1 zinc finger protein 703 protein-coding 305.5-10 chr7 35359926 35360384 + 1 NA intron (NR_038864, intron 2 of 2) AluSg7|SINE|Alu 46300 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 156.167-37 chr2 228538452 228538808 + 1 NA intron (NR_151716, intron 1 of 3) MER4A1|LTR|ERV1 72765 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 324.333-5 chr6 55437931 55438309 + 1 NA intron (NR_109869, intron 4 of 4) intron (NR_109869, intron 4 of 4) 110651 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 385.167-3 chr2 52732745 52733611 + 1 NA Intergenic MER74B|LTR|ERVL -30563 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 302.5-9 chr4 78078429 78078922 + 1 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) 21105 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 178.5-53 chr4 38041334 38041583 + 1 NA intron (NM_001253912, intron 8 of 20) L1ME3C|LINE|L1 -68723 NM_001253913 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 210.667-55 chr8 129714805 129715169 + 1 NA Intergenic L1MEf|LINE|L1 -34748 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 301.167-4 chr7 47342269 47342753 + 1 NA intron (NM_022748, intron 20 of 30) MIRc|SINE|MIR 122292 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 165.333-37 chr3 97975383 97975724 + 1 NA Intergenic Intergenic -3102 NM_001042533 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 247.333-12 chr3 100205194 100205489 + 1 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 19517 NR_028357 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 140.5-42 chr21 30625197 30625658 + 1 NA Intergenic MSTA-int|LTR|ERVL-MaLR 4800 NM_001350977 100151643 Hs.580879 NM_001350977 ENSG00000206105 KRTAP20-4 KAP20.4 keratin associated protein 20-4 protein-coding 239.333-25 chr8 85956198 85956791 + 1 NA Intergenic Intergenic 113174 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 151.833-38 chr3 107765205 107765356 + 1 NA intron (NM_001276286, intron 10 of 16) MIR|SINE|MIR 112788 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 335.333 chr1 204436909 204437332 + 1 NA intron (NM_002646, intron 24 of 33) intron (NM_002646, intron 24 of 33) -25303 NM_032833 84919 Hs.304376 NM_032833 ENSG00000158615 PPP1R15B CREP|MSSGM2 protein phosphatase 1 regulatory subunit 15B protein-coding 243.167-14 chr5 32388537 32388950 + 1 NA intron (NM_016107, intron 12 of 19) intron (NM_016107, intron 12 of 19) 5732 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 197.667-8 chr10 65853286 65853627 + 1 NA Intergenic Intergenic 282031 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 161.333-39 chr2 50436982 50437194 + 1 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -89332 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 203.667-16 chr2 63422140 63422661 + 1 NA intron (NR_148704, intron 10 of 18) L1MC5|LINE|L1 15607 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 167.333-62 chr6 151173695 151173986 + 1 NA Intergenic L1M5|LINE|L1 54617 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 136.667-58 chr3 32256843 32257005 + 1 NA intron (NM_001320308, intron 1 of 2) L1MB7|LINE|L1 18244 NM_178868 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 207.167-13 chr14 87563793 87564090 + 1 NA Intergenic THE1A-int|LTR|ERVL-MaLR 91353 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 197.667-46 chr4 165349211 165349459 + 1 NA Intergenic L3b|LINE|CR1 21666 NM_006745 6307 Hs.105269 NM_006745 ENSG00000052802 MSMO1 DESP4|ERG25|MCCPD|SC4MOL methylsterol monooxygenase 1 protein-coding 255.667-23 chr9 105866365 105866830 + 1 NA Intergenic Intergenic 172056 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 245.167-20 chrX 97931148 97931397 + 1 NA Intergenic Intergenic -366737 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 325.667-4 chr2 11362289 11362627 + 1 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -17021 NM_001321643 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 198.5-32 chr5 39697083 39697417 + 1 NA Intergenic Intergenic 176819 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 252.333-22 chr6 114959457 114959829 + 1 NA Intergenic MIRb|SINE|MIR 684192 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 170.333-48 chr3 83877059 83877375 + 1 NA Intergenic MLT2B3|LTR|ERVL 992358 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 380.333-2 chr4 33402646 33403093 + 1 NA Intergenic Tigger3a|DNA|TcMar-Tigger 637024 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 153.667-52 chr3 158788874 158789118 + 1 NA Intergenic Intergenic -13058 NM_001167903 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 184.667-7 chr10 81563728 81563956 + 1 NA Intergenic L1MA4A|LINE|L1 -311352 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 271.833-8 chr2 56417195 56417795 + 1 NA Intergenic Intergenic -231725 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 127.333-51 chr2 103450364 103450711 + 1 NA Intergenic Intergenic -466108 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 157.167-4 chr1 68824373 68824701 + 1 NA Intergenic Intergenic -231361 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 215.833-3 chr11 107201374 107201651 + 1 NA Intergenic L1ME4a|LINE|L1 -183036 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 184.5-4 chr10 33946958 33947245 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -174421 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 212.333-6 chr11 99264077 99264391 + 1 NA intron (NM_001243270, intron 1 of 23) (TAT)n|Simple_repeat|Simple_repeat 243285 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 133.833-24 chr13 32447711 32448165 + 1 NA intron (NM_001320836, intron 6 of 9) intron (NM_001320836, intron 6 of 9) -19808 NM_052818 90634 Hs.732118 NM_052818 ENSG00000139597 N4BP2L1 CG018 NEDD4 binding protein 2 like 1 protein-coding 185.333-21 chr16 9499524 9499853 + 1 NA Intergenic MER20|DNA|hAT-Charlie -44183 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 127.333-19 chr11 58272232 58272585 + 1 NA Intergenic Intergenic -4148 NM_207374 81341 Hs.531507 NM_207374 ENSG00000172772 OR10W1 OR10W1P|OR10W1Q|OR11-236|UNQ6469 olfactory receptor family 10 subfamily W member 1 protein-coding 117.5-42 chr3 128551869 128552031 + 1 NA Intergenic LTR67B|LTR|ERVL 24136 NR_125802 23434 Hs.194283 NM_007354 ENSG00000198685 LINC01565 C3orf27|GR6 long intergenic non-protein coding RNA 1565 ncRNA 146.5-71 chr5 75550176 75550420 + 1 NA intron (NM_016218, intron 2 of 14) L1M4|LINE|L1 -38317 NM_001130105 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 143.5-50 chr21 29261105 29261339 + 1 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -37700 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 173.333-20 chr14 61544419 61544740 + 1 NA intron (NM_006255, intron 12 of 13) intron (NM_006255, intron 12 of 13) 25615 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 199.667-4 chr10 35609847 35610212 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR 4688 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 353.5-5 chr2 51248470 51249024 + 1 NA intron (NR_135237, intron 2 of 10) Tigger13a|DNA|TcMar-Tigger 216146 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 187.333-50 chr3 23426995 23427318 + 1 NA intron (NM_001370225, intron 3 of 5) AluJb|SINE|Alu 223829 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 217.167-18 chr9 90403233 90403665 + 1 NA intron (NR_109795, intron 1 of 2) AluSz|SINE|Alu 30040 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 279.333-15 chr7 33878647 33879104 + 1 NA Intergenic LTR82B|LTR|ERVL -26040 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 156.333-57 chr21 33358391 33358641 + 1 NA 3' UTR (NM_000629, exon 11 of 11) 3' UTR (NM_000629, exon 11 of 11) 33546 NM_000629 3454 Hs.529400 NM_000629 ENSG00000142166 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon alpha and beta receptor subunit 1 protein-coding 266.167-10 chr14 72071611 72072103 + 1 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 138330 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 283.333-11 chr7 45959812 45960288 + 1 NA Intergenic L1MEf|LINE|L1 -38778 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 204.5-41 chr8 72229437 72229796 + 1 NA intron (NR_033867, intron 9 of 19) MIR1_Amn|SINE|MIR 22018 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 205.333 chr1 11508784 11509024 + 1 NA intron (NM_020780, intron 3 of 20) L1MEc|LINE|L1 29749 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 140.333-60 chr4 133223825 133224024 + 1 NA Intergenic Intergenic 74630 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 151.333-60 chr22 31626920 31627292 + 1 NA intron (NM_001326415, intron 2 of 8) intron (NM_001326415, intron 2 of 8) 3718 NM_014338 23761 Hs.420559 NM_014338 ENSG00000241878 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 241.167-11 chr4 75742428 75742977 + 1 NA intron (NM_003715, intron 1 of 23) intron (NM_003715, intron 1 of 23) 18180 NM_003715 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 200.5-37 chr6 27858790 27859187 + 1 NA Intergenic Intergenic -6341 NM_003511 8332 Hs.233568 NM_003511 ENSG00000276903 HIST1H2AL H2A.i|H2A/i|H2AFI|dJ193B12.9 histone cluster 1 H2A family member l protein-coding 207.5-22 chr20 39209535 39209794 + 1 NA Intergenic Intergenic 15084 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 120.667-63 chr2 150336714 150336932 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -79816 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 298.5 chr1 14310828 14311328 + 1 NA Intergenic Intergenic 108895 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 143.667-86 chr5 20948758 20948992 + 1 NA Intergenic L1MC1|LINE|L1 -333340 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 122.167-27 chr17 35067638 35068077 + 1 NA intron (NR_037713, intron 1 of 6) intron (NR_037713, intron 1 of 6) -4150 NM_001017368 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding 118.333-64 chr20 59066774 59067005 + 1 NA Intergenic L1ME3|LINE|L1 -24043 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 199.5-20 chr2 64560896 64561479 + 1 NA intron (NM_001002243, intron 2 of 8) intron (NM_001002243, intron 2 of 8) 35674 NR_039633 100616419 NR_039633 ENSG00000283204 MIR4434 - microRNA 4434 ncRNA 116.5-3 chr1 109446899 109447034 + 1 NA Intergenic AluSx|SINE|Alu -19580 NM_001040709 284612 Hs.528366 NM_001006603 ENSG00000143028 SYPL2 MG29 synaptophysin like 2 protein-coding 203.333-38 chr5 36080313 36080611 + 1 NA Intergenic L1M5|LINE|L1 -13580 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 120.5-9 chr10 19041625 19041784 + 1 NA Intergenic Intergenic -7097 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 167.167-60 chr8 119283376 119283773 + 1 NA Intergenic L2c|LINE|L2 -36717 NR_149113 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 185.5-15 chr15 62169700 62169908 + 1 NA Intergenic AluJb|SINE|Alu -4519 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 225.333-22 chr4 111303781 111304258 + 1 NA Intergenic Intergenic -443372 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 222.333-15 chr17 9497114 9497516 + 1 NA intron (NM_004853, intron 5 of 7) L1MC5|LINE|L1 78505 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 190.667-42 chr5 25256730 25257029 + 1 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 65926 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 169.667-53 chr3 197264802 197265078 + 1 NA intron (NM_001366216, intron 4 of 23) Kanga2_a|DNA|TcMar-Tc2 29008 NR_039960 100616216 NR_039960 ENSG00000265850 MIR4797 - microRNA 4797 ncRNA 191.667-3 chr1 189349537 189349977 + 1 NA Intergenic Intergenic 1126253 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 214.5-22 chr2 140295324 140295559 + 1 NA intron (NM_018557, intron 84 of 90) intron (NM_018557, intron 84 of 90) 291244 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 194.667-32 chr2 187322813 187323058 + 1 NA Intergenic L1P4|LINE|L1 125317 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 157.667-54 chr4 124250913 124251195 + 1 NA Intergenic Intergenic 307380 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 129.333-98 chr8 73321206 73321433 + 1 NA intron (NM_172037, intron 4 of 5) intron (NM_172037, intron 4 of 5) 26717 NM_172037 157506 Hs.244940 NM_172037 ENSG00000121039 RDH10 SDR16C4 retinol dehydrogenase 10 protein-coding 308.5-2 chr1 191983981 191984704 + 1 NA Intergenic Intergenic -174120 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 253.833-5 chr2 71752834 71753455 + 1 NA Intergenic Intergenic 286445 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 184.5-37 chr4 83358362 83358642 + 1 NA Intergenic Intergenic -23349 NM_001166498 10855 Hs.44227 NM_006665 ENSG00000173083 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 222.333-2 chr1 84498392 84498723 + 1 NA TTS (NM_025065) TTS (NM_025065) -7829 NM_001310156 100505741 Hs.584956 NM_022354 ENSG00000122432 SPATA1 SP-2|SPAP1 spermatogenesis associated 1 protein-coding 184.333-28 chr2 72574272 72574778 + 1 NA intron (NR_135774, intron 7 of 19) intron (NR_135774, intron 7 of 19) 251508 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 203.667-34 chr7 62935122 62935589 + 1 NA Intergenic ALR/Alpha|Satellite|centr 368701 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 135.5-29 chr14 54485424 54485844 + 1 NA intron (NM_004124, intron 1 of 6) L1M2|LINE|L1 3346 NM_004124 2764 Hs.151413 NM_004124 ENSG00000197045 GMFB GMF glia maturation factor beta protein-coding 220.333-6 chr13 113868160 113868528 + 1 NA Intergenic L1ME1|LINE|L1 4167 NR_044993 100506394 Hs.132168 NR_044993 ENSG00000272695 GAS6-DT GAS6-AS2 GAS6 divergent transcript ncRNA 162.667-87 chr8 143907448 143907688 + 1 NA Intergenic L1M4|LINE|L1 -29104 NM_031308 83481 Hs.200412 NM_031308 ENSG00000261150 EPPK1 EPIPL|EPIPL1 epiplakin 1 protein-coding 264.5-10 chr4 62960049 62960444 + 1 NA Intergenic Intergenic -798481 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 319.167-4 chr3 160965387 160965885 + 1 NA intron (NM_001317912, intron 3 of 4) MER47A|DNA|TcMar-Tigger 95038 NR_134243 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 182.667-25 chr16 20034508 20034718 + 1 NA intron (NM_001002911, intron 1 of 1) AluJr|SINE|Alu 39165 NM_001002911 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 192.333-14 chr17 73018975 73019445 + 1 NA intron (NM_001352692, intron 4 of 9) L1MEf|LINE|L1 73478 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 161.667-5 chr1 92729715 92730035 + 1 NA intron (NM_001350198, intron 2 of 19) L1MB7|LINE|L1 55233 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 350.333-8 chr6 103770523 103770945 + 1 NA Intergenic L2|LINE|L2 1088812 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 167.667-93 chr9 27913385 27913584 + 1 NA Intergenic L1MC1|LINE|L1 -339618 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 163.667-42 chr20 15746735 15747191 + 1 NA intron (NM_001351663, intron 8 of 17) MER76|LTR|ERVL 176351 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 224.667-12 chr17 73756624 73757114 + 1 NA TTS (NM_001278587) TTS (NM_001278587) 19015 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 126.333-7 chr1 224521649 224521915 + 1 NA intron (NM_001322304, intron 2 of 6) MLT1K|LTR|ERVL-MaLR 86933 NR_136294 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 296.333-6 chr15 68244593 68244998 + 1 NA Intergenic AluSz|SINE|Alu -15067 NM_017882 54982 Hs.584921 NM_017882 ENSG00000128973 CLN6 CLN4A|HsT18960|nclf CLN6 transmembrane ER protein protein-coding 289.5-13 chr5 113596164 113596556 + 1 NA Intergenic Intergenic 82666 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 176.5-56 chr5 133191037 133191376 + 1 NA Intergenic Intergenic 139193 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 259.333-15 chr4 114099329 114099693 + 1 NA Intergenic LTR50|LTR|ERVL -119864 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 115.167-75 chr4 77310201 77310424 + 1 NA Intergenic L1PREC2|LINE|L1 153105 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 173.333-66 chr7 113016534 113016905 + 1 NA Intergenic Intergenic -21076 NR_110162 101928036 Hs.120006 NR_110162 ENSG00000234520 HRAT17 - heart tissue-associated transcript 17 ncRNA 139.333-41 chr15 93435723 93435918 + 1 NA Intergenic Intergenic 229754 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 235.667-8 chr16 62191469 62191795 + 1 NA Intergenic L1ME3A|LINE|L1 -155194 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 146.833-50 chr5 66333475 66333850 + 1 NA Intergenic L2c|LINE|L2 -124216 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 279.333-2 chr13 65578097 65578478 + 1 NA Intergenic Intergenic -287760 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 176.667-41 chr2 227315691 227315916 + 1 NA intron (NR_102371, intron 1 of 13) L1M5|LINE|L1 9361 NR_102371 654841 Hs.659982 NR_102371 ENSG00000236432 LOC654841 - uncharacterized LOC654841 ncRNA 169.5-32 chr2 78836538 78836768 + 1 NA Intergenic L2b|LINE|L2 -189049 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 153.5-36 chr2 174630683 174630897 + 1 NA intron (NM_001077269, intron 1 of 7) intron (NM_001077269, intron 1 of 7) 3815 NM_003387 7456 Hs.128067 NM_003387 ENSG00000115935 WIPF1 PRPL-2|WAS2|WASPIP|WIP WAS/WASL interacting protein family member 1 protein-coding 215.667-52 chr9 30814043 30814421 + 1 NA Intergenic L2|LINE|L2 -405778 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 180.167-47 chr5 152229059 152229391 + 1 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 176054 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 313.667-12 chr4 134725031 134725592 + 1 NA Intergenic Intergenic 301443 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 211.833-24 chr5 132759925 132760340 + 1 NA intron (NM_001300799, intron 9 of 9) intron (NM_001300799, intron 9 of 9) 12687 NM_001287252 645121 Hs.522057 NM_001039780 ENSG00000205089 CCNI2 - cyclin I family member 2 protein-coding 140.5-38 chr2 115620434 115620702 + 1 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 276753 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 135.667-14 chr10 53328598 53328738 + 1 NA Intergenic Intergenic -556968 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 177.5-72 chr6 132995374 132995762 + 1 NA Intergenic Intergenic -92512 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 262.5-12 chr22 34704785 34705466 + 1 NA Intergenic AluSx1|SINE|Alu 292791 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 296.333-2 chr10 91928021 91928528 + 1 NA intron (NM_003972, intron 1 of 37) intron (NM_003972, intron 1 of 37) 4504 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 161.333-38 chr2 31674221 31674531 + 1 NA Intergenic L1PB3|LINE|L1 -93438 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 178.833-26 chr3 108839833 108840137 + 1 NA intron (NM_001317747, intron 2 of 4) intron (NM_001317747, intron 2 of 4) 17199 NM_016388 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 206.5-27 chr6 27912132 27912417 + 1 NA exon (NM_033057, exon 1 of 1) exon (NM_033057, exon 1 of 1) 122 NM_033057 81697 Hs.307111 NM_033057 ENSG00000168131 OR2B2 OR2B2Q|OR2B9|OR6-1|dJ193B12.4|hs6M1-10 olfactory receptor family 2 subfamily B member 2 protein-coding 205.667-40 chr21 28279050 28279349 + 1 NA Intergenic MIR|SINE|MIR -50532 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 137.667-84 chr6 62896281 62896636 + 1 NA Intergenic L1ME3Cz|LINE|L1 423519 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 166.333 chr1 30981136 30981643 + 1 NA exon (NM_014676, exon 8 of 22) exon (NM_014676, exon 8 of 22) -13152 NR_003066 692200 NR_003066 SNORD103C HBII-251|SNORD85 small nucleolar RNA, C/D box 103C snoRNA 289.667-7 chr4 57998902 57999297 + 1 NA Intergenic Intergenic 537229 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 210.833-31 chr8 18276331 18276562 + 1 NA Intergenic MER67C|LTR|ERV1 54778 NM_001160174 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 167.333-58 chr5 132890944 132891222 + 1 NA intron (NM_014423, intron 13 of 20) intron (NM_014423, intron 13 of 20) 17415 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 329.333-4 chr2 48124356 48124823 + 1 NA Intergenic Intergenic -190093 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 137.333-11 chr10 72071474 72071612 + 1 NA intron (NM_014767, intron 5 of 11) intron (NM_014767, intron 5 of 11) 17008 NM_001244950 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 407.167-2 chr1 233417369 233418104 + 1 NA Intergenic Intergenic 90012 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 167.833-34 chr3 83225757 83226092 + 1 NA Intergenic MIR|SINE|MIR 1239782 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 283.333-3 chr14 74444962 74445314 + 1 NA Intergenic MSTB|LTR|ERVL-MaLR -18928 NM_001105579 646658 Hs.12400 NM_001105579 ENSG00000183379 SYNDIG1L CAPUCIN|DSPC1|IFITMD4|TMEM90A synapse differentiation inducing 1 like protein-coding 280.5 chr1 79208210 79208535 + 1 NA Intergenic Intergenic -201642 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 277.333-2 chr1 99293243 99293732 + 1 NA intron (NM_014839, intron 2 of 6) intron (NM_014839, intron 2 of 6) 29195 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 139.667-57 chr2 177450604 177450811 + 1 NA intron (NM_003659, intron 8 of 19) L1ME1|LINE|L1 57934 NM_003659 8540 Hs.516543 NM_003659 ENSG00000018510 AGPS ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3 alkylglycerone phosphate synthase protein-coding 189.667-25 chr2 67248101 67248474 + 1 NA intron (NR_110564, intron 1 of 4) intron (NR_110564, intron 1 of 4) -32968 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 173.5-56 chr8 109866962 109867253 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 108664 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 177.167-48 chr8 130254647 130255070 + 1 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 41675 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 171.667-3 chr1 50391546 50391770 + 1 NA Intergenic L1MEd|LINE|L1 31785 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 148.833-45 chr4 57453189 57453606 + 1 NA intron (NR_125907, intron 4 of 5) L1MA8|LINE|L1 27525 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 311.5-6 chr2 144000243 144000989 + 1 NA intron (NM_001354353, intron 7 of 9) intron (NM_001354353, intron 7 of 9) 63549 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 219.333-22 chr20 12704950 12705271 + 1 NA Intergenic L1MD3|LINE|L1 231853 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 128.5-25 chr15 83709138 83709309 + 1 NA intron (NM_207517, intron 3 of 29) intron (NM_207517, intron 3 of 29) 55100 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 148.167-62 chr5 39024417 39024697 + 1 NA intron (NM_001285439, intron 2 of 38) UCON34|Unknown|Unknown 49842 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 375.5-2 chr7 78822557 78823307 + 1 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -186056 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 219.167-28 chrUn_KI270442v1 92360 93028 + 1 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 216.667-4 chr10 114986600 114986899 + 1 NA Intergenic L1MCc|LINE|L1 -7908 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 124.333-28 chr14 55986207 55986477 + 1 NA Intergenic Intergenic -132069 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 171.5-62 chr8 131489747 131490120 + 1 NA Intergenic Intergenic -414160 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 126.5-9 chr10 120455462 120455713 + 1 NA Intergenic Intergenic -1367 NM_001318168 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 162.833-13 chr12 86261652 86261851 + 1 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) -4452 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 134.5-24 chr12 9661714 9662100 + 1 NA Intergenic L1PA16|LINE|L1 -7806 NM_001004419 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 247.333-3 chr11 42088429 42088728 + 1 NA Intergenic Intergenic -3120 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 153.667-39 chr2 98247181 98247491 + 1 NA intron (NM_001345864, intron 13 of 21) L1MEi|LINE|L1 97803 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 147.333-33 chr17 55538608 55538799 + 1 NA Intergenic L1PB1|LINE|L1 -116868 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 208.333-46 chrX 39911870 39912206 + 1 NA Intergenic Intergenic 74477 NR_039763 100616251 NR_039763 ENSG00000263972 MIR1587 - microRNA 1587 ncRNA 257.5-3 chr1 109341292 109341771 + 1 NA intron (NM_001205228, intron 9 of 19) AluY|SINE|Alu -34520 NM_001265613 343263 Hs.443402 NM_001010985 ENSG00000221986 MYBPHL - myosin binding protein H like protein-coding 115.667-100 chr5 99046837 99047009 + 1 NA Intergenic L1MC5a|LINE|L1 -117209 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 233.667-25 chr6 66370924 66371324 + 1 NA Intergenic L1PA10|LINE|L1 583245 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 193.667-24 chr2 35044598 35044932 + 1 NA Intergenic Intergenic 367208 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 255.333-12 chr2 78574148 78574459 + 1 NA Intergenic Intergenic 28772 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 165.833-23 chr15 95644293 95644617 + 1 NA Intergenic Intergenic 211362 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 258.667-12 chr2 69382922 69383513 + 1 NA intron (NM_002056, intron 1 of 18) MER103C|DNA|hAT-Charlie 4010 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 132.333-7 chr1 186735938 186736128 + 1 NA Intergenic L2c|LINE|L2 55379 NR_125801 103752588 Hs.441636 NR_125801 ENSG00000273129 PACERR PACER|PTGS2-AS1|PTGS2AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 123.5-5 chr1 92699974 92700170 + 1 NA intron (NM_001350198, intron 5 of 19) intron (NM_001350198, intron 5 of 19) 85036 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 207.333-39 chr5 78042766 78043134 + 1 NA intron (NM_003664, intron 22 of 26) intron (NM_003664, intron 22 of 26) 84703 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 241.333-15 chr19 28824336 28824845 + 1 NA Intergenic Intergenic -96896 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 165.167-35 chr4 42544282 42544471 + 1 NA intron (NM_001105529, intron 18 of 35) A-rich|Low_complexity|Low_complexity 112729 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 310.5-5 chr12 14069369 14069764 + 1 NA Intergenic L1MD|LINE|L1 -89210 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 158.333-32 chr15 97260838 97261106 + 1 NA Intergenic Intergenic 260839 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 168.333-40 chr3 145438595 145438876 + 1 NA Intergenic Intergenic 630450 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 159.167-70 chr9 27759304 27759535 + 1 NA Intergenic MER3|DNA|hAT-Charlie -185553 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 230.167-19 chr5 42072037 42072428 + 1 NA Intergenic Intergenic 103113 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 119.5 chr1 10852966 10853219 + 1 NA Intergenic Intergenic -56446 NM_001079843 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 136.5-99 chr9 111211895 111212158 + 1 NA Intergenic Intergenic 59188 NR_106989 102465800 NR_106989 ENSG00000274263 MIR7702 hsa-mir-7702 microRNA 7702 ncRNA 213.5-35 chr6 150977529 150977867 + 1 NA intron (NM_001350486, intron 20 of 27) intron (NM_001350486, intron 20 of 27) -29310 NM_001350490 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 205.333-52 chr6 38582669 38583025 + 1 NA intron (NM_052893, intron 5 of 11) intron (NM_052893, intron 5 of 11) 13220 NM_001172418 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 339.333-3 chr7 9677837 9678418 + 1 NA Intergenic Intergenic 43857 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 287.667-2 chr11 22593346 22593808 + 1 NA Intergenic MER31B|LTR|ERV1 32264 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF FA complementation group F protein-coding 251.5-8 chr16 61677017 61677331 + 1 NA intron (NM_001796, intron 10 of 11) intron (NM_001796, intron 10 of 11) 359264 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 207.333-30 chr2 225508335 225508607 + 1 NA intron (NM_001371273, intron 3 of 7) LTR16B1|LTR|ERVL 107585 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 119.333-71 chr4 37804275 37804487 + 1 NA Intergenic L1ME3E|LINE|L1 -22305 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 178.667-67 chr8 67529752 67530020 + 1 NA intron (NM_020361, intron 2 of 10) HAL1|LINE|L1 186052 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 164.5-3 chr1 186901251 186901433 + 1 NA intron (NM_001311193, intron 5 of 15) intron (NM_001311193, intron 5 of 15) 72393 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 280.333-5 chr11 31896996 31897539 + 1 NA Intergenic Intergenic 70700 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 209.167-2 chr1 192172509 192173053 + 1 NA intron (NM_130782, intron 3 of 4) MLT1E2|LTR|ERVL-MaLR 14319 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 200.667-7 chr10 27183006 27183457 + 1 NA 3' UTR (NM_001352570, exon 13 of 13) 3' UTR (NM_001352570, exon 13 of 13) 28407 NM_001172303 84930 Hs.276905 NM_032844 ENSG00000120539 MASTL GREATWALL|GW|GWL|MAST-L|THC2 microtubule associated serine/threonine kinase like protein-coding 118.667-98 chr5 164833359 164833526 + 1 NA Intergenic Intergenic 363163 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 213.5-26 chr3 86545492 86545796 + 1 NA Intergenic HAL1M8|LINE|L1 63701 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 236.333-22 chr5 41609700 41610067 + 1 NA Intergenic L1PA5|LINE|L1 -99282 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 215.833-21 chr7 25463263 25463508 + 1 NA Intergenic Intergenic 199755 NR_157823 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 221.5 chr1 33225578 33226005 + 1 NA Intergenic Intergenic -30701 NM_152493 149076 Hs.743358 NM_152493 ENSG00000160094 ZNF362 RN|lin-29 zinc finger protein 362 protein-coding 124.167-98 chrX 70352936 70353119 + 1 NA intron (NM_012310, intron 14 of 30) intron (NM_012310, intron 14 of 30) 62923 NM_012310 24137 Hs.648326 NM_012310 ENSG00000090889 KIF4A KIF4|KIF4G1|MRX100 kinesin family member 4A protein-coding 377.5-4 chr7 50201879 50202404 + 1 NA Intergenic Intergenic -101923 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 198.667-3 chr1 207004751 207005164 + 1 NA Intergenic Intergenic 27799 NM_001083924 79098 Hs.32417 NM_023938 ENSG00000182795 C1orf116 SARG chromosome 1 open reading frame 116 protein-coding 240.5-7 chr2 179910758 179911350 + 1 NA Intergenic Intergenic -49442 NM_001352808 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 127.333-23 chr12 6573499 6573643 + 1 NA intron (NM_001273, intron 37 of 39) intron (NM_001273, intron 37 of 39) -5280 NM_001258310 4839 Hs.534334 NM_006170 ENSG00000111641 NOP2 NOL1|NOP120|NSUN1|p120 NOP2 nucleolar protein protein-coding 154.5-63 chr6 120074093 120074305 + 1 NA Intergenic Intergenic 59020 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 209.667-37 chr7 77676920 77677285 + 1 NA intron (NR_134251, intron 2 of 3) AluSx1|SINE|Alu 19163 NR_134251 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 159.667-12 chr10 18805322 18805601 + 1 NA Intergenic Intergenic 146030 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 213.5-14 chr2 34079464 34079813 + 1 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 12412 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 233.5-6 chr12 102936772 102937168 + 1 NA intron (NM_001354304, intron 1 of 13) THE1C|LTR|ERVL-MaLR -19726 NM_000277 5053 Hs.560019 NM_000277 ENSG00000171759 PAH PH|PKU|PKU1 phenylalanine hydroxylase protein-coding 294.167-4 chr12 58339570 58339968 + 1 NA Intergenic AluSz6|SINE|Alu 251877 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 175.667-29 chr2 72431279 72431456 + 1 NA intron (NM_001321729, intron 18 of 22) AluJo|SINE|Alu -283505 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 177.833-9 chr15 57089335 57089550 + 1 NA intron (NM_001322158, intron 5 of 20) intron (NM_001322158, intron 5 of 20) -129988 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 309.333-7 chr3 11210781 11211248 + 1 NA intron (NM_001098212, intron 1 of 1) L2a|LINE|L2 -14967 NM_001098211 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 136.667-65 chr3 110588671 110589109 + 1 NA Intergenic Intergenic 481069 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 245.833-11 chr3 4207209 4207530 + 1 NA Intergenic L1ME1|LINE|L1 -95935 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 113.667-117 chr7 29188284 29188473 + 1 NA intron (NM_001371264, intron 1 of 15) MIRb|SINE|MIR 1679 NM_001371262 321.167-10 chrX 96202089 96202638 + 1 NA Intergenic L1MA1|LINE|L1 135539 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 219.167-10 chr14 43037897 43038197 + 1 NA Intergenic Intergenic 1431191 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 192.333-36 chr3 195862088 195862432 + 1 NA Intergenic L1ME4b|LINE|L1 -1856 NR_134939 101929697 Hs.551750 NR_134939 LINC01983 - long intergenic non-protein coding RNA 1983 ncRNA 167.667-62 chr3 197163961 197164495 + 1 NA intron (NM_001290983, intron 5 of 25) AluSg|SINE|Alu 19644 NM_001366221 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 261.5-11 chr18 79210863 79211289 + 1 NA intron (NR_148360, intron 10 of 31) intron (NR_148360, intron 10 of 31) 141682 NM_001306085 374868 Hs.465475 NM_198531 ENSG00000166377 ATP9B ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1 ATPase phospholipid transporting 9B (putative) protein-coding 216.333-28 chr22 21890286 21890605 + 1 NA Intergenic L1MB4|LINE|L1 -22765 NM_002745 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 135.667-107 chr8 125073649 125073879 + 1 NA intron (NM_014846, intron 8 of 28) MIR3|SINE|MIR 18028 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 246.167-11 chr17 58542484 58543049 + 1 NA exon (NM_001038704, exon 1 of 2) exon (NM_001038704, exon 1 of 2) 1562 NM_001038704 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 174.333-54 chr6 137060071 137060390 + 1 NA Intergenic MER45R|DNA|hAT-Tip100 -15050 NM_001278723 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 165.667-25 chr15 44493175 44493583 + 1 NA intron (NM_016396, intron 5 of 12) MIRb|SINE|MIR 43521 NR_034171 645212 Hs.594287 NR_034170 EIF3J-DT EIF3J-AS1 EIF3J divergent transcript ncRNA 139.667-73 chr5 15237256 15237613 + 1 NA intron (NR_109944, intron 2 of 2) intron (NR_109944, intron 2 of 2) 29126 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 151.5-25 chr16 60676768 60677251 + 1 NA Intergenic Intergenic -317216 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 178.5-8 chr10 26881006 26881312 + 1 NA Intergenic Intergenic -20072 NM_001348033 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 179.667-42 chr5 79232182 79232674 + 1 NA Intergenic MER135|DNA|DNA -3703 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 217.5-20 chr18 13399377 13399706 + 1 NA intron (NM_181482, intron 3 of 5) intron (NM_181482, intron 3 of 5) 27993 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 186.5-26 chr14 65217586 65217842 + 1 NA non-coding (NR_103769, exon 3 of 4) non-coding (NR_103769, exon 3 of 4) 4633 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 156.833-66 chrX 94850271 94850555 + 1 NA Intergenic Intergenic 212813 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 261.333-24 chr7 40125688 40126133 + 1 NA TTS (NM_138701) TTS (NM_138701) 8712 NM_138701 136647 Hs.654989 NM_138701 ENSG00000168303 MPLKIP ABHS|C7orf11|ORF20|TTD4 M-phase specific PLK1 interacting protein protein-coding 300.333-9 chr16 70801480 70802031 + 1 NA promoter-TSS (NM_018052) promoter-TSS (NM_018052) -597 NM_001351157 55697 Hs.445061 NM_018052 ENSG00000103043 VAC14 ArPIKfyve|TAX1BP2|TRX VAC14 component of PIKFYVE complex protein-coding 115.833-39 chr2 193132336 193132484 + 1 NA Intergenic MSTA-int|LTR|ERVL-MaLR 382565 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 133.667-15 chr10 74706388 74706593 + 1 NA intron (NM_001369124, intron 9 of 9) L1M4|LINE|L1 -118765 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 173.5-25 chr17 45077043 45077375 + 1 NA intron (NM_021079, intron 1 of 11) intron (NM_021079, intron 1 of 11) 15892 NM_021079 4836 Hs.532790 NM_021079 ENSG00000136448 NMT1 NMT N-myristoyltransferase 1 protein-coding 120.667-96 chr6 587557 587813 + 1 NA intron (NM_018303, intron 11 of 27) intron (NM_018303, intron 11 of 27) 69279 NM_148959 135458 Hs.669039 NM_148959 ENSG00000188996 HUS1B - HUS1 checkpoint clamp component B protein-coding 352.5-4 chr17 40547259 40548055 + 1 NA Intergenic Intergenic 12737 NM_001301718 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 223.667-12 chr18 1299366 1299636 + 1 NA intron (NR_023926, intron 2 of 5) L1PA10|LINE|L1 60128 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 119.667-29 chr18 2998889 2999081 + 1 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) 12962 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 231.333-25 chr3 164382023 164382390 + 1 NA Intergenic Intergenic -210650 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 243.167-5 chr15 71232872 71233275 + 1 NA intron (NM_024817, intron 3 of 16) intron (NM_024817, intron 3 of 16) -44014 NR_120348 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 149.667-59 chr4 138554211 138554464 + 1 NA Intergenic Intergenic 244626 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 149.333-51 chr2 96094453 96094614 + 1 NA Intergenic L1MB5|LINE|L1 22038 NM_000682 151 Hs.247686 NM_000682 ENSG00000274286 ADRA2B ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR adrenoceptor alpha 2B protein-coding 214.333-33 chr4 32725835 32726213 + 1 NA Intergenic Intergenic 374986 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 457.333 chr14 46650274 46650979 + 1 NA TTS (NM_080746) TTS (NM_080746) 1155 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 132.667-30 chr14 58074394 58074695 + 1 NA intron (NM_001001872, intron 5 of 7) MER63D|DNA|hAT-Blackjack 77669 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 213.333-15 chr15 81537428 81537714 + 1 NA Intergenic L1MA2|LINE|L1 -163358 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 318.5-9 chr3 67036936 67037532 + 1 NA Intergenic L1M5|LINE|L1 38927 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 235.333-8 chr14 59613719 59614027 + 1 NA intron (NM_021136, intron 3 of 8) HUERS-P1-int|LTR|ERV1 -3734 NM_001363702 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 156.333-9 chr10 70006843 70007081 + 1 NA Intergenic HAL1M8|LINE|L1 -45884 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 137.333-47 chr2 44653778 44654075 + 1 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 284962 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 346.333-2 chr11 14144453 14144856 + 1 NA intron (NM_006108, intron 6 of 15) (AAT)n|Simple_repeat|Simple_repeat 181931 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 188.667-59 chr7 25179505 25179777 + 1 NA intron (NM_001371352, intron 1 of 9) intron (NM_001371352, intron 1 of 9) 713 NM_138811 136895 Hs.122055 NM_138811 ENSG00000153790 C7orf31 - chromosome 7 open reading frame 31 protein-coding 144.5-16 chr11 111216696 111216900 + 1 NA Intergenic L1M1|LINE|L1 -28927 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 246.667-27 chr8 122664917 122665206 + 1 NA Intergenic Intergenic 29045 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 207.667-14 chr15 99080786 99081173 + 1 NA Intergenic L1ME3A|LINE|L1 -24101 NM_145728 23336 Hs.207106 NM_015286 ENSG00000182253 SYNM DMN|SYN synemin protein-coding 391.333-4 chr4 171939040 171939683 + 1 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -125754 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 164.167-33 chr2 74195469 74195823 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR -2917 NR_027405 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 219.667-26 chr6 48021184 48021478 + 1 NA intron (NM_207499, intron 1 of 2) intron (NM_207499, intron 1 of 2) 47358 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 287.333-11 chr6 47146764 47147085 + 1 NA Intergenic Intergenic -104592 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 201.667-19 chr2 106766012 106766276 + 1 NA Intergenic Intergenic 119884 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 155.167-54 chrX 81074681 81075132 + 1 NA Intergenic HAL1|LINE|L1 127007 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 193.667-40 chr5 23222822 23223138 + 1 NA Intergenic Intergenic -284629 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 197.833-17 chr2 65046935 65047342 + 1 NA Intergenic MLT1M|LTR|ERVL-MaLR -9278 NM_015147 23177 Hs.709257 NM_015147 ENSG00000011523 CEP68 KIAA0582 centrosomal protein 68 protein-coding 147.167-59 chr7 150753033 150753183 + 1 NA Intergenic Intergenic 15760 NM_018384 55340 Hs.647079 NM_018384 ENSG00000196329 GIMAP5 HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD GTPase, IMAP family member 5 protein-coding 184.667-27 chr2 18345414 18345725 + 1 NA Intergenic Intergenic 215084 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 276.167-13 chr7 14857862 14858170 + 1 NA intron (NM_001350717, intron 1 of 24) intron (NM_001350717, intron 1 of 24) -16566 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 235.5-6 chr10 84399135 84399653 + 1 NA intron (NM_018999, intron 3 of 10) L1PB4|LINE|L1 -25545 NM_001284243 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 125.333-42 chr14 54103496 54103651 + 1 NA Intergenic L2c|LINE|L2 -146682 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 230.333-30 chr7 49027713 49028139 + 1 NA Intergenic Intergenic 103379 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 209.5-25 chr3 55276949 55277292 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR 98948 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 255.833-9 chr2 111014612 111014948 + 1 NA intron (NM_001371254, intron 15 of 18) L1ME2|LINE|L1 100808 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 164.5-62 chr8 128531721 128532082 + 1 NA intron (NR_121672, intron 2 of 7) MIR|SINE|MIR 32778 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 176.167-42 chr6 143730518 143730859 + 1 NA intron (NM_001100165, intron 2 of 11) L1MD|LINE|L1 52723 NM_001100164 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 240.333-7 chr11 98193907 98194481 + 1 NA Intergenic Intergenic -826755 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 240.333-33 chr9 25639363 25639655 + 1 NA Intergenic Intergenic 39349 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 156.667-46 chr18 26869854 26870012 + 1 NA intron (NR_026908, intron 1 of 7) intron (NR_026908, intron 1 of 7) -4130 NM_001317384 361 Hs.315369 NM_001650 ENSG00000171885 AQP4 MIWC|WCH4 aquaporin 4 protein-coding 154.5-19 chr12 101896986 101897250 + 1 NA intron (NM_018370, intron 1 of 6) intron (NM_018370, intron 1 of 6) 19538 NM_018370 55332 Hs.525634 NM_018370 ENSG00000136048 DRAM1 DRAM DNA damage regulated autophagy modulator 1 protein-coding 123.5-63 chr5 57265747 57265922 + 1 NA Intergenic AluSx|SINE|Alu 51760 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 217.333-32 chr5 83158519 83158915 + 1 NA intron (NM_001318012, intron 3 of 7) intron (NM_001318012, intron 3 of 7) 81170 NM_001318012 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 185.167-28 chr4 31027766 31028179 + 1 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -143172 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 179.5-33 chr7 52197219 52197460 + 1 NA Intergenic L1MB3|LINE|L1 -804083 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 118.667-81 chr3 139797835 139798005 + 1 NA Intergenic Intergenic -119870 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 312.667-11 chr7 92486868 92487257 + 1 NA TTS (NM_000466) TTS (NM_000466) -9116 NM_001130925 30816 NM_014590 ENSG00000242950 ERVW-1 ENV|ENVW|ERVWE1|HERV-7q|HERV-W-ENV|HERV7Q|HERVW|HERVWENV endogenous retrovirus group W member 1, envelope protein-coding 283.667-6 chr12 81257878 81258254 + 1 NA TTS (NM_001220480) TTS (NM_001220480) -21123 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 250.5-11 chr2 88011694 88012059 + 1 NA Intergenic AluJb|SINE|Alu -26086 NM_001024457 400966 Hs.728970 NM_001024457 ENSG00000187627 RGPD1 RGP1|RGPD2|RanBP2L2 RANBP2 like and GRIP domain containing 1 protein-coding 247.333-21 chr4 127391397 127391686 + 1 NA Intergenic MamRTE1|LINE|RTE-BovB -241416 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 127.5-10 chr10 5698121 5698291 + 1 NA intron (NM_017782, intron 1 of 20) MLT1H|LTR|ERVL-MaLR 13368 NM_001321785 54906 Hs.610717 NM_017782 ENSG00000108021 TASOR2 C10orf18|FAM208B|bA318E3.2 transcription activation suppressor family member 2 protein-coding 220.167-17 chr2 149922321 149922702 + 1 NA Intergenic L1MA9|LINE|L1 -63320 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 118.167-26 chr17 33709587 33709859 + 1 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -175963 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 156.333-51 chr2 216363366 216363793 + 1 NA intron (NM_020814, intron 1 of 3) intron (NM_020814, intron 1 of 3) 8904 NM_020814 57574 Hs.170388 NM_020814 ENSG00000144583 MARCH4 MARCH-IV|RNF174 membrane associated ring-CH-type finger 4 protein-coding 113.5-39 chr15 75643303 75643447 + 1 NA Intergenic AluSc8|SINE|Alu -3052 NM_018285 55272 Hs.513043 NM_018285 ENSG00000177971 IMP3 BRMS2|C15orf12|MRPS4 IMP U3 small nucleolar ribonucleoprotein 3 protein-coding 150.333-84 chr5 35432184 35432389 + 1 NA Intergenic LTR85c|LTR|Gypsy? -185577 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 223.167-5 chr17 59551328 59551577 + 1 NA Intergenic L1ME1|LINE|L1 -14158 NM_001166301 79665 Hs.29403 NM_024612 ENSG00000108406 DHX40 ARG147|DDX40|PAD DEAH-box helicase 40 protein-coding 164.333-55 chr5 13577301 13577527 + 1 NA Intergenic Intergenic 367066 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 243.833-5 chr1 198755209 198755473 + 1 NA intron (NM_002838, intron 32 of 32) intron (NM_002838, intron 32 of 32) 103641 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 115.5-91 chr6 104224114 104224262 + 1 NA Intergenic L1MC4a|LINE|L1 635358 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 206.333-19 chr2 179557072 179557434 + 1 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) 5335 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 174.667-64 chr8 84308932 84309270 + 1 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -106383 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 146.5-38 chr18 63179851 63180017 + 1 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 139446 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 191.5-52 chr9 72520021 72520291 + 1 NA Intergenic Intergenic -1645 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 382.333 chr10 78496070 78496776 + 1 NA Intergenic L1MD1|LINE|L1 229081 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 178.667-56 chr5 144882925 144883161 + 1 NA Intergenic Intergenic 677652 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 146.333-9 chr10 53873764 53874099 + 1 NA intron (NM_001354411, intron 27 of 34) MLT1A0|LTR|ERVL-MaLR -612299 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 221.167-8 chr14 55238277 55238688 + 1 NA Intergenic AluJo|SINE|Alu -32939 NM_017943 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 163.5-79 chr9 106855980 106856176 + 1 NA Intergenic Intergenic -7088 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 357.333 chr11 9576483 9577280 + 1 NA intron (NM_003390, intron 4 of 10) intron (NM_003390, intron 4 of 10) 2194 NM_001143976 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 130.5-7 chr10 50564862 50565005 + 1 NA intron (NM_147156, intron 2 of 10) intron (NM_147156, intron 2 of 10) 59023 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 140.333-71 chr5 112759998 112760182 + 1 NA intron (NM_001354895, intron 2 of 15) L1MEg|LINE|L1 22205 NM_001354905 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 249.333-19 chr4 62772889 62773344 + 1 NA Intergenic L2a|LINE|L2 -611351 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 316.833-6 chr16 48885051 48885576 + 1 NA Intergenic MamRep4096|DNA|hAT-Tip100 -275133 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 198.667-48 chr5 166171745 166172066 + 1 NA Intergenic Intergenic 754465 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 255.333-22 chr5 104939912 104940488 + 1 NA Intergenic MamRep1151|LTR?|LTR? -159274 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 272.333-12 chr18 29148808 29149338 + 1 NA Intergenic Intergenic -971943 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 293.333-5 chr14 61066385 61067023 + 1 NA intron (NR_033344, intron 15 of 16) MER8|DNA|TcMar-Tigger -85014 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 235.833-6 chr12 75905484 75905833 + 1 NA Intergenic Plat_L3|LINE|CR1 126118 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 177.667-29 chr17 50517860 50518121 + 1 NA intron (NM_001366294, intron 4 of 18) MLT1O|LTR|ERVL-MaLR 9551 NM_001366294 84073 Hs.398196 NM_032133 ENSG00000136449 MYCBPAP AMAP-1|AMAP1 MYCBP associated protein protein-coding 134.5-48 chr2 164408416 164408697 + 1 NA Intergenic AluY|SINE|Alu 159939 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 116.333-51 chr2 102028202 102028395 + 1 NA exon (NM_004633, exon 9 of 9) exon (NM_004633, exon 9 of 9) 29337 NR_048564 7850 Hs.25333 NM_004633 ENSG00000115590 IL1R2 CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB interleukin 1 receptor type 2 protein-coding 159.167-60 chr7 43086494 43086715 + 1 NA Intergenic L1PB4|LINE|L1 -26043 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 243.667-4 chr1 192136154 192136438 + 1 NA Intergenic MER1B|DNA|hAT-Charlie -22166 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 268.167-10 chr8 20466806 20467548 + 1 NA Intergenic Intergenic 147749 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 160.333-28 chr2 80768024 80768278 + 1 NA Intergenic L1ME2|LINE|L1 454772 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 142.5-31 chr17 61945166 61945385 + 1 NA 3' UTR (NM_005121, exon 30 of 30) 3' UTR (NM_005121, exon 30 of 30) -17293 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 225.833-17 chr6 143509728 143510172 + 1 NA intron (NM_032020, intron 1 of 6) MER34|LTR|ERV1 1770 NM_032020 2519 Hs.17680 NM_032020 ENSG00000001036 FUCA2 dJ20N2.5 alpha-L-fucosidase 2 protein-coding 222.667-6 chr13 49335050 49335565 + 1 NA intron (NM_001079670, intron 9 of 10) intron (NM_001079670, intron 9 of 10) 66235 NM_030925 81617 Hs.87159 NM_030925 ENSG00000102547 CAB39L MO25-BETA|MO2L|bA103J18.3 calcium binding protein 39 like protein-coding 237.833-24 chr8 139753764 139754264 + 1 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -50891 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 160.667-68 chr5 151753987 151754185 + 1 NA intron (NM_004045, intron 1 of 3) intron (NM_004045, intron 1 of 3) 4545 NM_004045 475 Hs.125213 NM_004045 ENSG00000177556 ATOX1 ATX1|HAH1 antioxidant 1 copper chaperone protein-coding 115.667-18 chr11 44174424 44174610 + 1 NA intron (NM_207122, intron 8 of 13) intron (NM_207122, intron 8 of 13) 78320 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 159.667-84 chr7 15295558 15295743 + 1 NA intron (NM_001004320, intron 12 of 12) L1M5|LINE|L1 266365 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 253.333-2 chr1 102093140 102093510 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -96091 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 149.667-10 chr10 29727706 29727988 + 1 NA intron (NM_001323599, intron 1 of 38) intron (NM_001323599, intron 1 of 38) 7954 NM_003174 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 237.333-7 chr11 104014475 104014807 + 1 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) -21999 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 130.667-47 chr22 24946900 24947108 + 1 NA promoter-TSS (NM_001001663) promoter-TSS (NM_001001663) -309 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 261.667-26 chr3 104686365 104686881 + 1 NA Intergenic L1ME2|LINE|L1 -680090 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 190.167-2 chr1 111697022 111697523 + 1 NA intron (NM_001370216, intron 3 of 7) intron (NM_001370216, intron 3 of 7) 32478 NM_001370217 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 191.333-24 chr3 146901596 146901993 + 1 NA Intergenic Intergenic -20129 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 194.833-19 chr3 112076046 112076525 + 1 NA intron (NR_026734, intron 14 of 16) intron (NR_026734, intron 14 of 16) -10050 NM_001171747 79669 Hs.434247 NM_024616 ENSG00000114529 C3orf52 TTMP chromosome 3 open reading frame 52 protein-coding 224.667-7 chr12 2070463 2070840 + 1 NA intron (NM_199460, intron 1 of 49).2 L1MEd|LINE|L1 17366 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 155.833-47 chr4 33560501 33560815 + 1 NA Intergenic Intergenic 479235 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 217.333-35 chr6 159582701 159583071 + 1 NA Intergenic Intergenic 110355 NM_001024465 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 202.333-35 chr5 10959478 10959795 + 1 NA Intergenic L1MB1|LINE|L1 -198402 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 287.667-4 chr16 84588337 84588706 + 1 NA intron (NM_021149, intron 3 of 3) AluJr|SINE|Alu 29557 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin like F-actin binding protein 1 protein-coding 170.333-61 chr6 45027303 45027596 + 1 NA intron (NM_001350327, intron 2 of 9) L1MEf|LINE|L1 170321 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 204.167-26 chr5 32678904 32679218 + 1 NA Intergenic ERVL-E-int|LTR|ERVL -11811 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 123.167-58 chr22 32957450 32957638 + 1 NA intron (NM_003490, intron 3 of 13) intron (NM_003490, intron 3 of 13) 49277 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 231.5-14 chr3 131019958 131020303 + 1 NA intron (NM_014065, intron 3 of 5) MIRb|SINE|MIR 6724 NR_110229 28990 Hs.100878 NM_014065 ENSG00000034533 ASTE1 HT001 asteroid homolog 1 protein-coding 332.5-9 chr5 147786029 147786387 + 1 NA Intergenic Intergenic -3480 NM_014790 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 236.333-11 chr16 79538239 79538638 + 1 NA Intergenic L1ME4a|LINE|L1 62299 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 245.667-15 chr2 28947892 28948268 + 1 NA 3' UTR (NM_015131, exon 18 of 18) 3' UTR (NM_015131, exon 18 of 18) 20097 NR_145755 109617012 NR_145755 ENSG00000265706 SNORD53B - small nucleolar RNA, C/D box 53B snoRNA 133.167-22 chr15 91559347 91559634 + 1 NA Intergenic Intergenic 96151 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 136.333-48 chr2 115833968 115834138 + 1 NA intron (NM_001321912, intron 22 of 25) intron (NM_001321912, intron 22 of 25) 490238 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 141.333-49 chr2 66042984 66043267 + 1 NA Intergenic MLT1A1|LTR|ERVL-MaLR 315203 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 232.333-38 chr9 11220569 11220905 + 1 NA Intergenic Intergenic 607531 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 244.333-6 chr12 79205733 79205994 + 1 NA intron (NM_005639, intron 3 of 10) intron (NM_005639, intron 3 of 10) 160171 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 163.167-32 chr4 94628421 94628603 + 1 NA intron (NM_006457, intron 8 of 12) intron (NM_006457, intron 8 of 12) 129021 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 188.833-36 chr7 21755775 21756089 + 1 NA intron (NM_001277115, intron 54 of 81) L1M5|LINE|L1 189967 NM_001127370 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 135.5-69 chr7 12554541 12554804 + 1 NA Intergenic Intergenic -16048 NR_156701 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 280.667-22 chr5 119808032 119808397 + 1 NA Intergenic L1MA1|LINE|L1 178655 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 191.333-39 chr8 40609227 40609580 + 1 NA intron (NM_001135731, intron 4 of 5) intron (NM_001135731, intron 4 of 5) -266040 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 190.167-22 chr18 8457497 8457832 + 1 NA Intergenic L1ME4a|LINE|L1 -90630 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 312.667-9 chr6 130656355 130656750 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -170853 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 207.333-5 chr1 162401006 162401312 + 1 NA intron (NM_053282, intron 2 of 3) intron (NM_053282, intron 2 of 3) 10977 NM_053282 117157 Hs.350581 NM_053282 ENSG00000198574 SH2D1B EAT2 SH2 domain containing 1B protein-coding 194.333-25 chr3 44624566 44624883 + 1 NA promoter-TSS (NR_136582) promoter-TSS (NR_136582) 73 NR_046658 100874094 NR_046658 ENSG00000233509 ZNF197-AS1 - ZNF197 antisense RNA 1 ncRNA 239.5-13 chr20 59036720 59037035 + 1 NA intron (NR_037930, intron 1 of 5) intron (NR_037930, intron 1 of 5) -4542 NM_006886 514 Hs.177530 NM_006886 ENSG00000124172 ATP5F1E ATP5E|ATPE|MC5DN3 ATP synthase F1 subunit epsilon protein-coding 149.5-38 chr21 21274503 21274661 + 1 NA intron (NM_001352592, intron 2 of 18) intron (NM_001352592, intron 2 of 18) 127420 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 253.667-15 chr6 36676117 36676487 + 1 NA promoter-TSS (NM_078467) promoter-TSS (NM_078467) 52 NM_001291549 1026 Hs.370771 NM_000389 ENSG00000124762 CDKN1A CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1 cyclin dependent kinase inhibitor 1A protein-coding 124.333-26 chr14 40631323 40631455 + 1 NA Intergenic (TTTAA)n|Simple_repeat|Simple_repeat -323322 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 171.333-13 chr10 29301989 29302215 + 1 NA intron (NM_032517, intron 3 of 4) L1MEc|LINE|L1 13032 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 150.667-59 chr22 28525607 28526009 + 1 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 65939 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 197.167-22 chr18 69710751 69711217 + 1 NA intron (NM_152721, intron 5 of 7) intron (NM_152721, intron 5 of 7) 236889 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 134.5-17 chr10 109789406 109789659 + 1 NA Intergenic MIRb|SINE|MIR 133714 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 152.5-50 chr5 12241548 12241892 + 1 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -333137 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 200.5-30 chr3 47457312 47457678 + 1 NA intron (NM_012235, intron 1 of 22) intron (NM_012235, intron 1 of 22) 18446 NM_001320044 22937 Hs.531789 NM_012235 ENSG00000114650 SCAP - SREBF chaperone protein-coding 175.5-17 chr17 73529999 73530188 + 1 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 16410 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 150.5-44 chr20 46091242 46091437 + 1 NA Intergenic Intergenic -1377 NM_001348149 57727 Hs.654991 NM_020967 ENSG00000124160 NCOA5 CIA|bA465L10.6 nuclear receptor coactivator 5 protein-coding 257.333-9 chr18 6282668 6283343 + 1 NA intron (NM_001365769, intron 4 of 16) intron (NM_001365769, intron 4 of 16) 26261 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 175.833-15 chr16 84646300 84646520 + 1 NA Intergenic Intergenic -2101 NM_024731 79786 Hs.222731 NM_024731 ENSG00000135686 KLHL36 C16orf44 kelch like family member 36 protein-coding 118.5-41 chr17 61239467 61239622 + 1 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 128160 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 145.333-27 chr14 70404509 70404838 + 1 NA intron (NM_001202549, intron 1 of 4) LTR23-int|LTR|ERV1 12417 NM_001202548 100529257 Hs.443661 NM_001202547 ENSG00000258644 SYNJ2BP-COX16 - SYNJ2BP-COX16 readthrough protein-coding 236.167-8 chr15 54680023 54680578 + 1 NA Intergenic L1MC4a|LINE|L1 -376447 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 215.5-8 chr11 38288330 38288638 + 1 NA Intergenic Intergenic 349883 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 157.667-36 chr2 174868794 174869030 + 1 NA intron (NR_038133, intron 5 of 11) intron (NR_038133, intron 5 of 11) -21294 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 162.167-14 chr13 88318414 88318643 + 1 NA Intergenic Intergenic 175661 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 256.667-18 chr3 31098617 31098928 + 1 NA Intergenic Intergenic 63015 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 210.667-29 chr21 21639836 21640153 + 1 NA Intergenic L1MA5A|LINE|L1 97325 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 262.167-25 chr9 29607074 29607509 + 1 NA Intergenic L1MA4|LINE|L1 -393690 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 147.833 chr1 41212832 41213350 + 1 NA intron (NM_001172218, intron 1 of 15) intron (NM_001172218, intron 1 of 15) 29215 NM_012236 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 192.667-37 chr3 183794362 183794735 + 1 NA intron (NM_001351369, intron 21 of 30) intron (NM_001351369, intron 21 of 30) 15903 NR_046727 100874113 NR_046727 YEATS2-AS1 - YEATS2 antisense RNA 1 ncRNA 148.5-18 chr13 50494044 50494409 + 1 NA intron (NR_109974, intron 5 of 6) L2c|LINE|L2 33223 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 147.5-52 chr20 13202869 13203100 + 1 NA Intergenic MER57B2|LTR|ERV1 -18290 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 335.333-7 chr8 121920207 121920838 + 1 NA Intergenic Intergenic -279082 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 153.667-66 chr6 38927106 38927298 + 1 NA intron (NM_001371, intron 73 of 91) L1M5|LINE|L1 25905 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 230.667-30 chr7 40280105 40280393 + 1 NA intron (NM_024728, intron 8 of 14) intron (NM_024728, intron 8 of 14) 145273 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 167.5-46 chr4 39862696 39863027 + 1 NA intron (NM_001100399, intron 25 of 32) intron (NM_001100399, intron 25 of 32) 115050 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 123.333-16 chr10 31655778 31655934 + 1 NA Intergenic L1MEc|LINE|L1 253070 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 201.833-4 chr11 82415975 82416369 + 1 NA Intergenic L1MA6|LINE|L1 -12259 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 267.333-19 chr3 105204109 105204415 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -162451 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 334.5-9 chr22 26802870 26803371 + 1 NA Intergenic AluSx|SINE|Alu -57091 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 140.667-4 chr1 167759652 167759808 + 1 NA intron (NM_024569, intron 1 of 4) L2|LINE|L2 37748 NM_001146191 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 250.5-13 chr2 149812318 149812593 + 1 NA intron (NR_145421, intron 2 of 4) intron (NR_145421, intron 2 of 4) 46736 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 185.333-26 chr17 56488847 56489140 + 1 NA intron (NM_001370326, intron 18 of 20) MIRb|SINE|MIR -104706 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 124.333-5 chr1 186427543 186427757 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -7511 NR_126002 102724919 Hs.576493 NR_126002 ENSG00000229739 LOC102724919 - uncharacterized LOC102724919 ncRNA 226.167-10 chr15 39072050 39072354 + 1 NA Intergenic Intergenic -178467 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 165.667-3 chr1 82196666 82196920 + 1 NA Intergenic Intergenic 394340 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 156.5-17 chr10 89940273 89940567 + 1 NA intron (NR_110655, intron 3 of 3) intron (NR_110655, intron 3 of 3) 16953 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 280.5-4 chr10 81427951 81428385 + 1 NA Intergenic Intergenic -447026 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 245.833-19 chr9 88657983 88658267 + 1 NA Intergenic Intergenic 87780 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 118.333-102 chr7 14583875 14584070 + 1 NA intron (NM_001350717, intron 16 of 24) L1ME3G|LINE|L1 257478 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 264.833-2 chr1 115788067 115788521 + 1 NA Intergenic L1ME1|LINE|L1 -19489 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 134.5-43 chr2 72024052 72024227 + 1 NA Intergenic Intergenic 123723 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 124.5-44 chr3 20958530 20958703 + 1 NA Intergenic Intergenic -447110 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 121.333-57 chr20 43153618 43153937 + 1 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 36129 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 204.5-21 chr20 37350638 37351099 + 1 NA intron (NM_198291, intron 1 of 13) MER117|DNA|hAT-Charlie 4740 NM_198291 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 232.333-13 chr2 48479000 48479477 + 1 NA intron (NR_024188, intron 12 of 21) L1MB8|LINE|L1 38469 NM_001193475 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 139.667-64 chr3 103317319 103317578 + 1 NA Intergenic Intergenic 206668 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 237.5-20 chr4 162221751 162222067 + 1 NA Intergenic Intergenic -57875 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 125.333-131 chrX 100923545 100923778 + 1 NA intron (NM_212559, intron 1 of 2) intron (NM_212559, intron 1 of 2) 5256 NM_212559 402415 Hs.364911 NM_212559 ENSG00000182489 XKRX XKR2|XPLAC|XRG2 XK related X-linked protein-coding 227.333-40 chr7 33198618 33199065 + 1 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 69277 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 118.5-25 chr12 104187415 104187702 + 1 NA Intergenic LTR1C1|LTR|ERV1 -28221 NM_001093771 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 175.667-27 chr19 55551751 55552000 + 1 NA Intergenic Intergenic -6332 NM_001199824 100130827 Hs.712129 NM_001199824 ENSG00000231274 SBK3 SGK110 SH3 domain binding kinase family member 3 protein-coding 138.333-40 chr15 70020376 70020546 + 1 NA Intergenic MIR|SINE|MIR 59007 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 249.667-38 chr6 38810683 38811146 + 1 NA intron (NM_001371, intron 23 of 91) L1MEi|LINE|L1 95603 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 159.333-13 chr10 62561131 62561427 + 1 NA intron (NM_199452, intron 1 of 6) intron (NM_199452, intron 1 of 6) 40831 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 270.833 chr1 111003765 111004416 + 1 NA Intergenic MER65-int|LTR|ERV1 -40146 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 189.667-11 chr12 28586051 28586399 + 1 NA Intergenic Intergenic -395487 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 206.667-2 chr1 84815346 84815644 + 1 NA intron (NM_012152, intron 2 of 2) L3|LINE|CR1 77711 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 130.667-55 chr3 161426507 161426737 + 1 NA non-coding (NR_102265, exon 1 of 4) non-coding (NR_102265, exon 1 of 4) 195 NR_102265 101243545 Hs.737526 NR_102265 ENSG00000240567 LINC02067 - long intergenic non-protein coding RNA 2067 ncRNA 215.667-4 chr1 220832220 220832628 + 1 NA TTS (NR_110797) TTS (NR_110797) 3169 NR_110797 101929730 Hs.398159 NR_110797 ENSG00000238078 LINC01352 - long intergenic non-protein coding RNA 1352 ncRNA 187.667-50 chr7 47963869 47964073 + 1 NA non-coding (NR_037917, exon 9 of 9) non-coding (NR_037917, exon 9 of 9) -15480 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 150.5-51 chr3 180379017 180379185 + 1 NA Intergenic L1MB5|LINE|L1 -35072 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 167.667-37 chr18 6751923 6752104 + 1 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -22151 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 206.333-12 chr19 37313933 37314315 + 1 NA intron (NR_138103, intron 1 of 8) AluJb|SINE|Alu 1287 NR_138103 284459 Hs.640243 NM_181786 ENSG00000181666 ZNF875 HKR1 zinc finger protein 875 protein-coding 235.167-17 chr22 48013672 48014137 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -260460 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 171.667-75 chr7 11567651 11567883 + 1 NA intron (NM_015204, intron 4 of 26) intron (NM_015204, intron 4 of 26) 264431 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 283.333 chr11 104733784 104734126 + 1 NA Intergenic Intergenic -124653 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 154.667-50 chr4 47879384 47879692 + 1 NA intron (NR_103795, intron 15 of 23) L1MC2|LINE|L1 -34689 NR_125879 101927157 Hs.134190 NR_125879 LOC101927157 - uncharacterized LOC101927157 ncRNA 138.5-65 chr6 103062882 103063207 + 1 NA Intergenic L1MA4|LINE|L1 1664059 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 205.333-63 chr9 17218786 17219060 + 1 NA intron (NM_001365029, intron 2 of 25) intron (NM_001365029, intron 2 of 25) 83883 NM_001286984 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 217.667-42 chr6 78626016 78626462 + 1 NA Intergenic Intergenic -86930 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 147.333-94 chr8 137191264 137191534 + 1 NA Intergenic Intergenic 222189 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 220.333-31 chr8 72066696 72066974 + 1 NA intron (NM_007332, intron 3 of 26) LTR88c|LTR|Gypsy? 8749 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 195.667-37 chr6 42384293 42384737 + 1 NA intron (NM_001297573, intron 2 of 17) L1ME4b|LINE|L1 67536 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 248.667-25 chr9 89667101 89667720 + 1 NA intron (NR_024280, intron 2 of 5) MER20B|DNA|hAT-Charlie 27627 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 226.167-22 chr5 89797213 89797503 + 1 NA Intergenic L1MC3|LINE|L1 219362 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 261.5-3 chr11 60301297 60301944 + 1 NA intron (NM_001243266, intron 4 of 5) intron (NM_001243266, intron 4 of 5) 20954 NM_001243266 51338 Hs.325960 NM_024021 ENSG00000110079 MS4A4A 4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 membrane spanning 4-domains A4A protein-coding 127.333-53 chr2 117724931 117725179 + 1 NA Intergenic MER34|LTR|ERV1 -89636 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 138.333-46 chr16 83072098 83072340 + 1 NA intron (NM_001220489, intron 3 of 12) Charlie5|DNA|hAT-Charlie -81921 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 240.667-19 chr2 39950198 39950511 + 1 NA intron (NR_038441, intron 2 of 4) L1MC4a|LINE|L1 32720 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 252.167-21 chrX 75539157 75539750 + 1 NA Intergenic L1PB1|LINE|L1 -15951 NM_001146256 158866 Hs.253211 NM_144969 ENSG00000102383 ZDHHC15 DHHC15|MRX91 zinc finger DHHC-type containing 15 protein-coding 195.5-34 chr6 80303199 80303480 + 1 NA intron (NR_134945, intron 10 of 10) intron (NR_134945, intron 10 of 10) 196668 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 307.333-8 chr5 121572727 121573294 + 1 NA Intergenic L1M4|LINE|L1 250460 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 284.167-8 chr19 34763895 34764329 + 1 NA intron (NM_001007248, intron 3 of 3) intron (NM_001007248, intron 3 of 3) 9103 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 115.5-97 chr7 127918910 127919121 + 1 NA intron (NM_014390, intron 14 of 23) intron (NM_014390, intron 14 of 23) -78494 NR_027330 27099 Hs.657377 NM_014411 ENSG00000279078 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 ncRNA 131.667-125 chr8 113584472 113584652 + 1 NA Intergenic MamGypsy2-I|LTR|Gypsy -147623 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 116.667-112 chr9 37456813 37456953 + 1 NA intron (NM_014872, intron 1 of 1) intron (NM_014872, intron 1 of 1) 8567 NM_014872 9925 Hs.161276 NM_014872 ENSG00000168795 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 142.5-63 chr5 146659761 146660017 + 1 NA intron (NM_181678, intron 6 of 10) intron (NM_181678, intron 6 of 10) -143776 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 203.167-7 chr11 31976852 31977119 + 1 NA Intergenic L1PA8|LINE|L1 64333 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 139.5-77 chr8 131337363 131337566 + 1 NA Intergenic Intergenic -296555 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 133.667-58 chr21 22992452 22992663 + 1 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR -86727 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 169.5-6 chr10 100326072 100326259 + 1 NA intron (NM_016112, intron 2 of 15) intron (NM_016112, intron 2 of 15) 4063 NM_001253837 9033 Hs.159241 NM_016112 ENSG00000107593 PKD2L1 PCL|PKD2L|PKDL|TRPP3 polycystin 2 like 1, transient receptor potential cation channel protein-coding 176.667-54 chr4 43997552 43997953 + 1 NA Intergenic Intergenic -19109 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 225.333-17 chr2 179962178 179962594 + 1 NA intron (NM_020943, intron 13 of 19) intron (NM_020943, intron 13 of 19) 44911 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 114.833-24 chr17 55575935 55576183 + 1 NA Intergenic L2a|LINE|L2 146805 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 134.5-40 chr2 24217998 24218272 + 1 NA intron (NM_001348182, intron 29 of 38) intron (NM_001348182, intron 29 of 38) 43082 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 186.667-36 chr2 76284556 76284973 + 1 NA Intergenic Intergenic -573849 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 213.333-29 chr3 66905760 66906003 + 1 NA Intergenic Intergenic -92426 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 171.667-59 chr4 74785667 74785917 + 1 NA intron (NM_001316963, intron 1 of 4) intron (NM_001316963, intron 1 of 4) 8731 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 232.333-19 chr2 215028330 215028599 + 1 NA intron (NR_103740, intron 10 of 54) intron (NR_103740, intron 10 of 54) 3622 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 251.667-4 chr17 54050798 54051133 + 1 NA Intergenic THE1B-int|LTR|ERVL-MaLR 228038 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 197.667-14 chr12 116052876 116053136 + 1 NA intron (NM_015335, intron 4 of 30) intron (NM_015335, intron 4 of 30) 95648 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 204.833-21 chr4 123752581 123752818 + 1 NA intron (NR_027105, intron 3 of 5) L1ME3A|LINE|L1 -21565 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 225.667-35 chr8 100494252 100494530 + 1 NA Intergenic Intergenic 65368 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 114.333-88 chr3 101504944 101505279 + 1 NA intron (NM_020654, intron 1 of 23) L1PB4|LINE|L1 8101 NM_001077203 57337 Hs.529551 NM_020654 ENSG00000138468 SENP7 - SUMO specific peptidase 7 protein-coding 135.5-82 chr8 130897040 130897337 + 1 NA intron (NM_001115, intron 7 of 17) intron (NM_001115, intron 7 of 17) 143721 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 156.667-30 chr14 52743868 52744097 + 1 NA intron (NM_001130701, intron 2 of 11) AluSz|SINE|Alu 13816 NM_001130701 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 154.5-49 chr4 10534389 10534616 + 1 NA intron (NM_052964, intron 11 of 18) MIRc|SINE|MIR -77076 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 146.5-54 chr3 64607485 64607743 + 1 NA intron (NM_001318781, intron 21 of 38) intron (NM_001318781, intron 21 of 38) 46268 NR_110150 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 131.5-88 chr9 31731992 31732202 + 1 NA Intergenic AluJr|SINE|Alu -350607 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 201.667-45 chr7 133374499 133374998 + 1 NA intron (NM_021807, intron 6 of 17) intron (NM_021807, intron 6 of 17) 83867 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 237.833-11 chr5 35639541 35640030 + 1 NA intron (NM_144722, intron 2 of 9) intron (NM_144722, intron 2 of 9) 21922 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 138.167-36 chr18 56541056 56541389 + 1 NA Intergenic L2b|LINE|L2 97370 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 341.5-8 chr9 35436628 35437129 + 1 NA intron (NR_003581, intron 3 of 17) L1PA12|LINE|L1 30123 NR_003581 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 219.833-10 chr19 37491999 37492504 + 1 NA Intergenic L1M2|LINE|L1 -14688 NM_001013659 390927 Hs.568010 NM_001013659 ENSG00000188227 ZNF793 - zinc finger protein 793 protein-coding 295.333 chr12 13570597 13571009 + 1 NA intron (NM_000834, intron 10 of 12) intron (NM_000834, intron 10 of 12) -194058 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 175.333-7 chr12 40719263 40719548 + 1 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) 26963 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 263.5-8 chr17 67628640 67629033 + 1 NA intron (NM_181671, intron 5 of 9) LTR41B|LTR|ERVL -88997 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 201.333-23 chr2 230903233 230903471 + 1 NA intron (NR_038238, intron 3 of 3) Charlie4a|DNA|hAT-Charlie 16806 NR_038238 151484 Hs.559309 NR_038238 ENSG00000232520 LOC151484 - uncharacterized LOC151484 ncRNA 298.667-7 chr2 45459606 45460069 + 1 NA intron (NM_018079, intron 16 of 20) MIRb|SINE|MIR 151430 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 234.167-3 chr14 52356836 52357075 + 1 NA Intergenic Intergenic 42643 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 173.5-3 chr1 103031715 103031930 + 1 NA intron (NM_001854, intron 4 of 66) intron (NM_001854, intron 4 of 66) 76674 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 236.667-27 chr4 61385401 61385778 + 1 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 183417 NM_001371342 229.667-8 chr12 132544855 132545297 + 1 NA intron (NM_001142641, intron 4 of 16) intron (NM_001142641, intron 4 of 16) -36921 NR_106821 102465975 NR_106821 ENSG00000277052 MIR6763 hsa-mir-6763 microRNA 6763 ncRNA 178.5-27 chr14 59720266 59720601 + 1 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -73413 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 123.667-96 chr6 146477034 146477215 + 1 NA Intergenic Intergenic -66709 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 146.333-41 chr18 7548675 7548843 + 1 NA Intergenic Intergenic -18557 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 206.5-34 chr7 7455949 7456312 + 1 NA intron (NM_001037763, intron 15 of 34) intron (NM_001037763, intron 15 of 34) 79743 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 182.333-42 chr3 31702038 31702241 + 1 NA intron (NM_001174060, intron 6 of 10) intron (NM_001174060, intron 6 of 10) -2074 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 204.833-29 chr6 72713185 72713445 + 1 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 82820 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 258.5-23 chr9 92421411 92421858 + 1 NA intron (NM_005014, intron 1 of 2) intron (NM_005014, intron 1 of 2) 2920 NM_005014 4958 Hs.94070 NM_005014 ENSG00000127083 OMD OSAD|SLRR2C osteomodulin protein-coding 167.5-60 chr8 33029414 33029628 + 1 NA Intergenic L1MA5|LINE|L1 307686 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 221.667-7 chr10 28574608 28574918 + 1 NA intron (NM_100486, intron 3 of 12) L1MB8|LINE|L1 41645 NM_100486 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 215.167-26 chr6 69455109 69455551 + 1 NA Intergenic Intergenic 341136 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 229.333-9 chr12 58716095 58716388 + 1 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 65475 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 133.333-25 chr11 102224517 102224686 + 1 NA intron (NM_001130145, intron 7 of 8) intron (NM_001130145, intron 7 of 8) -92883 NM_001165 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 121.333-2 chr1 55462371 55462645 + 1 NA Intergenic (TATTT)n|Simple_repeat|Simple_repeat 236867 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 171.5-2 chr1 113727336 113727654 + 1 NA intron (NM_001323046, intron 3 of 15) intron (NM_001323046, intron 3 of 15) 31660 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 317.5-7 chr2 200120958 200121412 + 1 NA Intergenic Intergenic -165694 NR_109905 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 197.667-58 chr7 87883157 87883364 + 1 NA intron (NM_001318060, intron 2 of 10) L1MB3|LINE|L1 6767 NM_006716 10926 Hs.485380 NM_006716 ENSG00000006634 DBF4 ASK|CHIF|DBF4A|ZDBF1 DBF4 zinc finger protein-coding 148.667-75 chr7 102865190 102865535 + 1 NA intron (NR_105043, intron 17 of 20) intron (NR_105043, intron 17 of 20) -47638 NM_001031692 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 170.667-71 chr7 37607689 37607897 + 1 NA Intergenic Intergenic -75973 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 170.833-37 chr5 10437554 10437848 + 1 NA 3' UTR (NM_001270661, exon 23 of 23) 3' UTR (NM_001270661, exon 23 of 23) 4150 NR_102746 100505845 Hs.599395 NR_102746 ROPN1L-AS1 - ROPN1L antisense RNA 1 ncRNA 119.667-8 chr10 59775976 59776187 + 1 NA Intergenic L1PA13|LINE|L1 -22626 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 313.667-10 chr20 31184982 31185498 + 1 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -72424 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 131.333-96 chr8 9770367 9770711 + 1 NA intron (NM_003747, intron 26 of 26) intron (NM_003747, intron 26 of 26) 28867 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 236.5-15 chr18 951174 951787 + 1 NA Intergenic Intergenic -23487 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 153.833-39 chr21 20867746 20868055 + 1 NA Intergenic MIR3|SINE|MIR -64792 NR_109788 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 153.333-18 chr14 43337854 43338138 + 1 NA Intergenic MER57C2|LTR|ERV1 1169287 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 228.833-8 chr18 7645216 7645589 + 1 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 78086 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 246.5-10 chr16 72540236 72540646 + 1 NA intron (NR_159372, intron 3 of 7) MER21A|LTR|ERVL 124529 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 183.667-40 chr2 156075399 156075651 + 1 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 179406 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 327.333-7 chr3 107508200 107508747 + 1 NA Intergenic MIRb|SINE|MIR -14489 NM_020235 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 187.333-4 chr1 197385045 197385310 + 1 NA intron (NM_001193640, intron 3 of 9) intron (NM_001193640, intron 3 of 9) 116925 NM_201253 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 148.333-102 chr8 77767964 77768264 + 1 NA Intergenic Intergenic 317417 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 329.667-5 chr21 28466991 28467498 + 1 NA Intergenic MLT2D|LTR|ERVL -72074 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 159.333-35 chr2 44967906 44968175 + 1 NA Intergenic Intergenic -26162 NR_103786 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 183.167-12 chr12 31548669 31548924 + 1 NA intron (NM_001308339, intron 1 of 22) intron (NM_001308339, intron 1 of 22) -41127 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 172.333-27 chr17 49509389 49509660 + 1 NA intron (NM_002507, intron 3 of 5) intron (NM_002507, intron 3 of 5) -1293 NR_106751 102465141 NR_106751 ENSG00000277478 MIR6165 hsa-mir-6165 microRNA 6165 ncRNA 201.333-40 chr8 111478195 111478618 + 1 NA Intergenic LTR43-int|LTR|ERV1 101767 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 201.667-10 chr12 23790057 23790297 + 1 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) 159493 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 222.333-22 chr3 99907766 99908127 + 1 NA intron (NM_001042459, intron 4 of 4) L2c|LINE|L2 -31743 NM_014890 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 141.667-64 chr3 55911371 55911592 + 1 NA intron (NR_132749, intron 12 of 17) intron (NR_132749, intron 12 of 17) -58887 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 183.333-67 chrX 100089576 100089862 + 1 NA Intergenic AluJr4|SINE|Alu 320554 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 217.333-14 chr18 4065242 4065531 + 1 NA intron (NM_001242761, intron 2 of 11) L1PA13|LINE|L1 103033 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 256.5-16 chr2 122482734 122483060 + 1 NA Intergenic MER110|LTR|ERV1 590584 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 218.333-23 chr20 13984456 13984840 + 1 NA intron (NM_001363752, intron 1 of 16) (TCTC)n|Simple_repeat|Simple_repeat 5966 NM_025229 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 133.5-44 chr4 66657690 66657968 + 1 NA Intergenic Intergenic 381005 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 352.833 chr2 6462581 6463140 + 1 NA Intergenic Intergenic -87438 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 270.5-12 chr8 43857954 43858236 + 1 NA Intergenic ALR/Alpha|Satellite|centr 565653 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 323.5-6 chr8 49990620 49991175 + 1 NA intron (NR_135798, intron 1 of 15) L1MB8|LINE|L1 79490 NM_001321776 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 152.667-28 chr14 51063388 51063651 + 1 NA intron (NM_015163, intron 1 of 9) L1MEf|LINE|L1 32185 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 240.667-13 chr14 63742837 63743133 + 1 NA Intergenic AluY|SINE|Alu -14920 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 205.333-60 chr8 85584007 85584222 + 1 NA Intergenic HAL1|LINE|L1 71562 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 233.667-26 chr6 122618951 122619397 + 1 NA intron (NM_181795, intron 1 of 4) intron (NM_181795, intron 1 of 4) 8769 NM_181795 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 173.667-29 chr2 107171829 107172145 + 1 NA intron (NR_049853, intron 2 of 3) L1MC3|LINE|L1 177538 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 143.5-85 chr8 78151559 78151748 + 1 NA Intergenic L1MD2|LINE|L1 -364687 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 121.5-103 chr8 100247274 100247463 + 1 NA Intergenic L2b|LINE|L2 54825 NM_001353837 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 122.333-109 chr8 77415464 77415616 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -35157 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 193.333-40 chr3 196880146 196880572 + 1 NA intron (NM_152699, intron 1 of 9) FLAM_A|SINE|Alu 12439 NM_152699 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 284.833-3 chr17 42746005 42746587 + 1 NA Intergenic AluSq2|SINE|Alu -1256 NM_001321081 2145 Hs.194669 NM_001991 ENSG00000108799 EZH1 KMT6B enhancer of zeste 1 polycomb repressive complex 2 subunit protein-coding 317.167-7 chr2 112334503 112335095 + 1 NA 3' UTR (NM_198581, exon 12 of 12) 3' UTR (NM_198581, exon 12 of 12) 59202 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 189.333-33 chr3 43108563 43109070 + 1 NA Intergenic L1ME4a|LINE|L1 -2737 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 136.333-91 chr7 148680011 148680227 + 1 NA Intergenic AluSz6|SINE|Alu -17637 NM_001370660 8454 Hs.146806 NM_003592 ENSG00000055130 CUL1 - cullin 1 protein-coding 259.167-15 chr5 40369138 40369654 + 1 NA Intergenic MSTD|LTR|ERVL-MaLR -310519 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 185.333-36 chr21 32743530 32743897 + 1 NA TTS (NR_038879) TTS (NR_038879) 15599 NR_038880 100506215 Hs.657123 NR_038879 ENSG00000238197 PAXBP1-AS1 GCFC1-AS1 PAXBP1 antisense RNA 1 ncRNA 195.833-2 chr10 20849820 20850237 + 1 NA intron (NM_006393, intron 11 of 27) intron (NM_006393, intron 11 of 27) 47574 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 160.667-18 chr11 33286984 33287259 + 1 NA exon (NM_005734, exon 2 of 17) exon (NM_005734, exon 2 of 17) 28790 NM_001278162 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 212.667-12 chr11 78831397 78831791 + 1 NA intron (NM_001098816, intron 12 of 33) intron (NM_001098816, intron 12 of 33) -256730 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 120.167-36 chr2 106619318 106619692 + 1 NA Intergenic L1MC2|LINE|L1 132141 NM_001368307 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 157.833-63 chr7 47148206 47148532 + 1 NA Intergenic Intergenic 316434 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 179.667-17 chr17 11296309 11296741 + 1 NA intron (NM_001173461, intron 2 of 3) L2a|LINE|L2 55102 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 150.667-60 chr22 45852991 45853246 + 1 NA Intergenic L1MEg|LINE|L1 92594 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 148.333-76 chr4 139644303 139644458 + 1 NA Intergenic L1PB4|LINE|L1 -21388 NM_001204367 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 161.333-73 chr7 86706848 86707087 + 1 NA intron (NM_001363522, intron 1 of 4) L1ME4c|LINE|L1 63053 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 148.833-62 chr8 129089418 129089944 + 1 NA Intergenic Intergenic -123680 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 243.667-36 chr8 77980866 77981238 + 1 NA Intergenic Intergenic 530355 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 190.667-44 chr5 43358511 43358746 + 1 NA Intergenic Intergenic 38509 NM_001301875 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 135.667-16 chr10 71557311 71557497 + 1 NA intron (NM_052836, intron 6 of 12) HAL1|LINE|L1 -45484 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 145.333-34 chr16 60519647 60519979 + 1 NA Intergenic L1MA4A|LINE|L1 -160020 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 306.5-2 chr12 16326155 16326649 + 1 NA Intergenic Intergenic -20740 NM_145792 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 128.333-21 chr11 91435134 91435348 + 1 NA Intergenic Intergenic -566039 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 225.667-12 chr18 6710580 6710918 + 1 NA Intergenic MER57E1|LTR|ERV1 -18967 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 167.833-53 chr7 21502466 21502855 + 1 NA intron (NM_003112, intron 5 of 5) HERVP71A-int|LTR|ERV1 31602 NR_031594 100302122 NR_031594 ENSG00000221783 MIR1183 MIRN1183|hsa-mir-1183 microRNA 1183 ncRNA 140.5-75 chr8 79657280 79657551 + 1 NA intron (NM_007029, intron 4 of 4) intron (NM_007029, intron 4 of 4) 46298 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 163.333-64 chr5 53972400 53972753 + 1 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -20977 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 199.333 chr1 50970300 50970614 + 1 NA exon (NM_001262, exon 2 of 3) exon (NM_001262, exon 2 of 3) 212 NM_078626 1031 Hs.525324 NM_001262 ENSG00000123080 CDKN2C INK4C|p18|p18-INK4C cyclin dependent kinase inhibitor 2C protein-coding 205.667-20 chr15 20645197 20645463 + 1 NA Intergenic L1MC3|LINE|L1 82981 NR_027411 729786 Hs.592025 NR_027411 ENSG00000181984 GOLGA8CP GOLGA8C golgin A8 family member C, pseudogene pseudo 153.667-75 chr8 60943183 60943477 + 1 NA Intergenic Intergenic 24418 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 125.333-3 chr1 77567647 77567894 + 1 NA intron (NM_015534, intron 13 of 14) intron (NM_015534, intron 13 of 14) 114888 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 255.667-2 chr1 93172491 93173007 + 1 NA intron (NM_001167830, intron 1 of 4) L1MA7|LINE|L1 7664 NR_030761 50999 Hs.482873 NM_016040 ENSG00000117500 TMED5 CGI-100|p24g2|p28 transmembrane p24 trafficking protein 5 protein-coding 131.667-128 chr8 136810913 136811093 + 1 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 280205 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 170.167-5 chr10 76373417 76374076 + 1 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -514298 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 159.5-17 chr15 59028309 59028740 + 1 NA intron (NM_001270530, intron 1 of 13) MER44A|DNA|TcMar-Tigger 40378 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 271.5-13 chr2 100424146 100424521 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -6665 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 165.333-52 chr5 151270215 151270444 + 1 NA TTS (NM_001167607) TTS (NM_001167607) 17144 NM_001167607 2760 Hs.483873 NM_000405 ENSG00000196743 GM2A GM2-AP|SAP-3 GM2 ganglioside activator protein-coding 132.833-22 chr15 85441332 85441515 + 1 NA intron (NM_007200, intron 1 of 36) L1M4|LINE|L1 60820 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 158.667-54 chr22 31792632 31792821 + 1 NA intron (NR_146296, intron 11 of 42) intron (NR_146296, intron 11 of 42) 38703 NM_001369903 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 253.167-2 chr2 30773475 30773900 + 1 NA intron (NM_144575, intron 4 of 22) L1M5|LINE|L1 33759 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 159.167-45 chr4 40468685 40468966 + 1 NA intron (NM_001098634, intron 2 of 6) intron (NM_001098634, intron 2 of 6) 33294 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 146.5-31 chr15 69236447 69236619 + 1 NA intron (NM_001324092, intron 2 of 3) MIRc|SINE|MIR -62379 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 336.333-4 chr3 165047271 165047651 + 1 NA intron (NM_001041, intron 15 of 47) THE1B|LTR|ERVL-MaLR 31035 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 253.333-17 chr5 85274033 85274448 + 1 NA Intergenic Intergenic -889360 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 217.667-49 chr8 114454184 114454483 + 1 NA Intergenic L2c|LINE|L2 -1017394 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 211.333-51 chr9 27023682 27024041 + 1 NA intron (NM_001099224, intron 12 of 13) L1PBa|LINE|L1 -18189 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 152.667-71 chr5 110429592 110430032 + 1 NA intron (NM_001039763, intron 12 of 13) intron (NM_001039763, intron 12 of 13) 84103 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 217.5-39 chr5 42530089 42530389 + 1 NA intron (NM_001242400, intron 2 of 10) intron (NM_001242400, intron 2 of 10) -17804 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 123.333-12 chr1 240555757 240555964 + 1 NA intron (NM_022469, intron 1 of 1) intron (NM_022469, intron 1 of 1) 56295 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 339.333 chr4 78647216 78647894 + 1 NA intron (NR_038307, intron 1 of 2) AluJb|SINE|Alu 1561 NR_038304 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 136.5-24 chr12 64053555 64053730 + 1 NA intron (NM_001346201, intron 6 of 21) intron (NM_001346201, intron 6 of 21) 168654 NM_001300941 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 246.833-10 chr2 179854220 179854556 + 1 NA intron (NM_001352808, intron 1 of 10) MIR3|SINE|MIR 6520 NR_031659 100302172 NR_031659 ENSG00000221240 MIR1258 MIRN1258|hsa-mir-1258|mir-1258 microRNA 1258 ncRNA 126.5-83 chr8 78361880 78362027 + 1 NA Intergenic MLT2A2|LTR|ERVL -154387 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 151.667-40 chr2 86398503 86398752 + 1 NA Intergenic Intergenic -42744 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 158.5-28 chr17 64124992 64125250 + 1 NA intron (NM_001433, intron 1 of 21) L1MB8|LINE|L1 5023 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 185.5-7 chr10 74576655 74576965 + 1 NA intron (NM_001369123, intron 7 of 9) intron (NM_001369123, intron 7 of 9) -47486 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 150.667-45 chr19 31935882 31936060 + 1 NA Intergenic L1M6|LINE|L1 -89891 NR_110674 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 172.667-14 chr10 131820978 131821185 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -30882 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 207.667-49 chr9 76874593 76874882 + 1 NA intron (NM_001308048, intron 1 of 17) intron (NM_001308048, intron 1 of 17) 31350 NM_001308048 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 187.667-54 chr8 61438801 61439105 + 1 NA intron (NM_173519, intron 3 of 5) intron (NM_173519, intron 3 of 5) 150983 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 269.333-13 chr5 2164846 2165294 + 1 NA Intergenic Intergenic 147131 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 181.667-56 chr6 86287541 86287783 + 1 NA Intergenic LTR8|LTR|ERV1 -608929 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 140.667-14 chr11 5817270 5817546 + 1 NA Intergenic Intergenic -2928 NM_001005174 390077 Hs.553737 NM_001005174 ENSG00000180988 OR52N2 OR11-57 olfactory receptor family 52 subfamily N member 2 protein-coding 247.5-25 chr5 7156691 7157051 + 1 NA Intergenic L1PA15-16|LINE|L1 112483 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 310.333 chr12 26405615 26406002 + 1 NA intron (NM_002223, intron 52 of 56) AluSx|SINE|Alu 210235 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 209.5 chr10 26393540 26393918 + 1 NA Intergenic Intergenic -44612 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 367.667 chr10 37341661 37342411 + 1 NA intron (NR_104061, intron 3 of 4) L1M2|LINE|L1 32850 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 193.667-4 chr1 190268964 190269223 + 1 NA intron (NM_001317188, intron 2 of 6) intron (NM_001317188, intron 2 of 6) 206917 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 243.5-7 chr12 115057043 115057385 + 1 NA Intergenic L1M4|LINE|L1 -373039 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 262.833-10 chr6 166016725 166017243 + 1 NA Intergenic L1ME1|LINE|L1 -28945 NR_026861 90632 Hs.31917 NR_026860 ENSG00000112541 LINC00473 C6orf176|LNC473|bA142J11.1 long intergenic non-protein coding RNA 473 ncRNA 176.667-73 chr8 22851560 22851736 + 1 NA intron (NM_001363233, intron 3 of 6) intron (NM_001363233, intron 3 of 6) -26324 NR_125433 101929237 Hs.677838 NR_125433 ENSG00000248738 LOC101929237 - uncharacterized LOC101929237 ncRNA 182.667-34 chr2 212501893 212502145 + 1 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 36609 NM_001042599 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 147.5-67 chr4 78710876 78711075 + 1 NA Intergenic L1ME3|LINE|L1 64981 NR_038304 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 339.667-9 chr9 105546184 105546789 + 1 NA 3' UTR (NM_001145313, exon 14 of 14) 3' UTR (NM_001145313, exon 14 of 14) -11644 NM_001079802 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 177.5-76 chr7 100566536 100566730 + 1 NA 3' UTR (NM_006076, exon 12 of 12) 3' UTR (NM_006076, exon 12 of 12) 7267 NM_001348680 100316904 Hs.633863 NM_001168682 ENSG00000205307 SAP25 - Sin3A associated protein 25 protein-coding 141.333-5 chr1 171661729 171662000 + 1 NA Intergenic L2a|LINE|L2 -9176 NM_000261 4653 Hs.436037 NM_000261 ENSG00000034971 MYOC GLC1A|GPOA|JOAG|JOAG1|TIGR myocilin protein-coding 162.5-3 chr1 210029709 210029967 + 1 NA intron (NM_153262, intron 4 of 7) L1MB3|LINE|L1 91621 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 201.333-16 chr16 7939065 7939279 + 1 NA Intergenic Intergenic 606327 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 382.833 chr5 36745179 36745983 + 1 NA Intergenic Intergenic 131113 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 291.667-14 chr2 46939835 46940136 + 1 NA intron (NM_001288953, intron 2 of 20) intron (NM_001288953, intron 2 of 20) -1239 NM_001288951 57217 Hs.370603 NM_020458 ENSG00000068724 TTC7A GIDID|MINAT|TTC7 tetratricopeptide repeat domain 7A protein-coding 243.5-2 chr10 50498330 50498598 + 1 NA intron (NM_147156, intron 3 of 10) L1MB3|LINE|L1 125492 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 164.833-3 chr1 44123778 44123996 + 1 NA intron (NM_173484, intron 1 of 3) L1M4c|LINE|L1 5066 NM_173484 128209 Hs.567674 NM_173484 ENSG00000171872 KLF17 ZNF393|Zfp393 Kruppel like factor 17 protein-coding 124.333-60 chr3 68367449 68367646 + 1 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -133090 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 138.667-81 chr6 41085744 41086015 + 1 NA intron (NM_021705, intron 3 of 8) intron (NM_021705, intron 3 of 8) 11908 NM_001329684 221443 Hs.227457 NM_145063 ENSG00000124596 OARD1 C6orf130|TARG1|dJ34B21.3 O-acyl-ADP-ribose deacylase 1 protein-coding 248.333-9 chr5 78392784 78393140 + 1 NA intron (NR_110885, intron 2 of 7) intron (NR_110885, intron 2 of 7) 32345 NM_001290229 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 257.667-17 chr7 28365575 28365844 + 1 NA intron (NM_182899, intron 1 of 9) L2a|LINE|L2 -46809 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 160.667-10 chr1 185060008 185060254 + 1 NA intron (NM_007212, intron 1 of 6) intron (NM_007212, intron 1 of 6) 14573 NM_007212 6045 Hs.591490 NM_007212 ENSG00000121481 RNF2 BAP-1|BAP1|DING|HIPI3|RING1B|RING2 ring finger protein 2 protein-coding 235.333-10 chr16 26451765 26452056 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR 426673 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 201.5-29 chr4 136620507 136620724 + 1 NA Intergenic Intergenic -573141 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 201.333-18 chr18 59576495 59577058 + 1 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 120647 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 144.5-41 chr2 25608453 25608628 + 1 NA intron (NM_033147, intron 4 of 19) intron (NM_033147, intron 4 of 19) 41682 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 282.667-9 chr14 74633213 74633718 + 1 NA Intergenic Intergenic -21228 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 149.333-8 chr1 167991188 167991469 + 1 NA exon (NM_001349774, exon 6 of 20) exon (NM_001349774, exon 6 of 20) -7332 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 256.333-24 chr8 111825358 111825797 + 1 NA Intergenic LTR26D|LTR|ERV1 448938 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 212.333-38 chr8 64649477 64649922 + 1 NA intron (NM_004820, intron 1 of 5) L1MB2|LINE|L1 -67807 NR_152770 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 168.833-34 chr22 48137701 48138048 + 1 NA Intergenic Intergenic -136490 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 143.333-69 chr5 79821277 79821456 + 1 NA Intergenic L1ME1|LINE|L1 -115213 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 194.167-23 chr4 59403369 59403727 + 1 NA Intergenic Intergenic 389975 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 159.5-6 chr10 61075343 61075535 + 1 NA Intergenic Tigger17a|DNA|TcMar-Tigger 59164 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 310.667-5 chr3 139042329 139042734 + 1 NA 3' UTR (NM_001134657, exon 1 of 1) 3' UTR (NM_001134657, exon 1 of 1) 2361 NM_001134657 389152 Hs.531377 NM_001004315 ENSG00000233701 PRR23C - proline rich 23C protein-coding 202.667-9 chr11 96165477 96165902 + 1 NA intron (NM_032427, intron 1 of 4) L1ME4a|LINE|L1 -175749 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 236.333-23 chr6 128787363 128787723 + 1 NA Intergenic L1P2|LINE|L1 -95595 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 170.333 chr1 63221435 63221796 + 1 NA intron (NR_038252, intron 4 of 11) L2a|LINE|L2 95642 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 116.5-33 chr2 21143760 21143946 + 1 NA 3' UTR (NM_001306137, exon 4 of 4) 3' UTR (NM_001306137, exon 4 of 4) 19867 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 177.333-41 chr3 33589814 33590071 + 1 NA intron (NM_001365634, intron 19 of 35) intron (NM_001365634, intron 19 of 35) 69737 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 258.333-19 chr19 57788678 57789052 + 1 NA Intergenic Intergenic 19189 NM_017652 54807 Hs.625133 NM_017652 ENSG00000083828 ZNF586 - zinc finger protein 586 protein-coding 120.667-90 chr4 123353028 123353250 + 1 NA Intergenic L1ME3A|LINE|L1 -43656 NM_199327 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 198.333-39 chr7 5099472 5099758 + 1 NA Intergenic L1MA5|LINE|L1 27555 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 208.5-31 chr3 108559654 108560026 + 1 NA exon (NM_020890, exon 16 of 21) exon (NM_020890, exon 16 of 21) 29598 NM_020890 57650 Hs.591308 NM_020890 ENSG00000163507 CIP2A KIAA1524|p90 cell proliferation regulating inhibitor of protein phosphatase 2A protein-coding 326.333 chr11 36493429 36494027 + 1 NA intron (NM_145803, intron 6 of 7) intron (NM_145803, intron 6 of 7) 16544 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 308.5-6 chr14 71291746 71292429 + 1 NA Intergenic Intergenic -28389 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 227.667-24 chr5 38790331 38790797 + 1 NA intron (NR_109951, intron 2 of 3) MLT1L|LTR|ERVL-MaLR 55265 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 316.833-7 chr2 212083433 212083957 + 1 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 342665 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 172.5-52 chr5 141024196 141024434 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -27061 NM_013340 29930 Hs.278950 NM_013340 ENSG00000171815 PCDHB1 PCDH-BETA1 protocadherin beta 1 protein-coding 150.167-10 chr11 127167034 127167207 + 1 NA Intergenic L1MEf|LINE|L1 100118 NR_120578 101929473 Hs.737523 NR_120578 ENSG00000255087 LOC101929473 - uncharacterized LOC101929473 ncRNA 117.833-46 chr20 19010547 19010713 + 1 NA Intergenic Intergenic -180427 NR_161342 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 327.833-2 chr16 80008991 80009484 + 1 NA Intergenic Intergenic 213988 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 170.667-24 chr16 56416819 56417107 + 1 NA intron (NM_001144, intron 1 of 13) intron (NM_001144, intron 1 of 13) 8026 NM_001323511 267 Hs.295137 NM_001144 ENSG00000159461 AMFR GP78|RNF45 autocrine motility factor receptor protein-coding 343.667-8 chr7 47097209 47097600 + 1 NA Intergenic L1M5|LINE|L1 367399 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 174.167-45 chrX 137872137 137872405 + 1 NA Intergenic MIRb|SINE|MIR 306144 NM_001330661 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 293.333-16 chr8 52926936 52927543 + 1 NA Intergenic L2|LINE|L2 -12669 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 252.667-17 chr3 54304319 54304808 + 1 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 182011 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 202.667-27 chr20 6376694 6376991 + 1 NA Intergenic Intergenic -49890 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 208.5-38 chr5 26060160 26060421 + 1 NA Intergenic Intergenic 869337 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 177.5-23 chr13 92202848 92203255 + 1 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 149156 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 257.333-26 chr8 119359979 119360321 + 1 NA Intergenic Intergenic 34979 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 228.833-3 chr11 17895647 17896204 + 1 NA intron (NR_104041, intron 8 of 9) L1ME4a|LINE|L1 117122 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 122.667-72 chr3 161815972 161816307 + 1 NA Intergenic AluY|SINE|Alu 319331 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 173.5-14 chr11 43442531 43442796 + 1 NA intron (NM_001307943, intron 17 of 19) L4_C_Mam|LINE|RTE-X 83743 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 333.333-4 chr6 100704540 100705131 + 1 NA intron (NM_006828, intron 13 of 41) intron (NM_006828, intron 13 of 41) 176494 NM_006828 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 181.667-63 chr7 46444224 46444543 + 1 NA Intergenic L2|LINE|L2 252739 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 284.667-15 chr6 158874227 158874629 + 1 NA intron (NR_160977, intron 2 of 3) L1MCa|LINE|L1 4399 NR_160982 100130967 Hs.32804 NM_001195032 C6orf99 - chromosome 6 open reading frame 99 ncRNA 219.167-20 chr5 65420816 65421239 + 1 NA intron (NR_135689, intron 7 of 25) L1PBa|LINE|L1 60893 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 127.667-29 chr15 67964516 67964680 + 1 NA Intergenic L1MB5|LINE|L1 -89581 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 177.667-36 chr2 99881373 99881685 + 1 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 224054 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 272.5-17 chr5 36485454 36485960 + 1 NA Intergenic AluJr4|SINE|Alu -120648 NM_001289939 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 184.667-3 chr1 192643251 192643590 + 1 NA intron (NM_002927, intron 3 of 6) intron (NM_002927, intron 3 of 6) 7273 NM_144766 6003 Hs.497220 NM_002927 ENSG00000127074 RGS13 - regulator of G protein signaling 13 protein-coding 126.333-8 chr1 237148038 237148165 + 1 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 105917 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 116.667-35 chr14 78699203 78699327 + 1 NA intron (NR_073547, intron 6 of 20) L2c|LINE|L2 295546 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 153.5-17 chr12 24070285 24070561 + 1 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -119391 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 130.667-67 chr4 92055272 92055568 + 1 NA Intergenic L1MA1|LINE|L1 221882 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 158.5-25 chr15 58574334 58574508 + 1 NA Intergenic AluJr|SINE|Alu -75686 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 157.5-49 chr4 175656084 175656397 + 1 NA intron (NM_001261447, intron 1 of 4) intron (NM_001261447, intron 1 of 4) 131436 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 169.333-76 chr9 84886420 84886637 + 1 NA intron (NM_001018064, intron 13 of 17) intron (NM_001018064, intron 13 of 17) 180627 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 170.333-67 chr7 53581664 53581941 + 1 NA Intergenic L1MD|LINE|L1 230129 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 410.5 chr8 84751540 84752328 + 1 NA intron (NM_001287244, intron 1 of 7) MSTA-int|LTR|ERVL-MaLR 46007 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 215.833-4 chr11 114388194 114388573 + 1 NA Intergenic L1ME2|LINE|L1 -8344 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 265.167 chr1 33359013 33359449 + 1 NA intron (NR_125978, intron 2 of 2) intron (NR_125978, intron 2 of 2) 8879 NR_125978 101929464 Hs.568627 NR_125978 ENSG00000233246 LOC101929464 - uncharacterized LOC101929464 ncRNA 203.333-5 chr10 122792463 122792753 + 1 NA intron (NR_003570, intron 24 of 27) intron (NR_003570, intron 24 of 27) 35914 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 231.667-22 chr21 25464362 25464687 + 1 NA Intergenic Intergenic -32823 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 124.5-75 chr8 78342045 78342179 + 1 NA Intergenic L1MEd|LINE|L1 -174228 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 223.333-34 chr5 120685279 120685923 + 1 NA intron (NM_001308088, intron 3 of 3) L1MCc|LINE|L1 154137 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 137.167-8 chr10 10309176 10309407 + 1 NA Intergenic Intergenic 153058 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 195.667-15 chr16 69613121 69613628 + 1 NA intron (NM_138714, intron 2 of 15) L2c|LINE|L2 47408 NM_001113178 10725 Hs.371987 NM_006599 ENSG00000102908 NFAT5 NF-AT5|NFATL1|NFATZ|OREBP|TONEBP nuclear factor of activated T cells 5 protein-coding 182.667-61 chr8 103671562 103671812 + 1 NA intron (NM_001348488, intron 3 of 25) MER57A-int|LTR|ERV1 -147533 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 146.167-61 chr6 39516321 39516532 + 1 NA intron (NM_001289021, intron 12 of 21) (AT)n|Simple_repeat|Simple_repeat -85036 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 187.5-3 chr1 190456522 190456821 + 1 NA intron (NM_199051, intron 1 of 7) intron (NM_199051, intron 1 of 7) 19339 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 238.167-28 chr8 117852766 117853066 + 1 NA intron (NM_000127, intron 1 of 10) L2b|LINE|L2 67997 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 179.667-6 chr10 105120737 105121099 + 1 NA intron (NM_014978, intron 7 of 26) MER117|DNA|hAT-Charlie -454702 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 157.5-64 chr8 24784542 24784915 + 1 NA Intergenic L2|LINE|L2 -129033 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 253.833-6 chr2 95578921 95579215 + 1 NA Intergenic Intergenic -12933 NM_138800 129868 Hs.232026 NM_138800 ENSG00000144015 TRIM43 TRIM43A tripartite motif containing 43 protein-coding 215.667-50 chr8 91378955 91379428 + 1 NA intron (NM_134266, intron 15 of 18) L1ME3B|LINE|L1 129872 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 199.667-63 chr9 85010400 85010627 + 1 NA intron (NM_001018064, intron 16 of 17) intron (NM_001018064, intron 16 of 17) 304612 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 274.167-2 chr13 64101871 64102178 + 1 NA Intergenic Intergenic -26013 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 152.167-82 chr9 26378830 26379080 + 1 NA Intergenic Intergenic 312280 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 273.667-20 chr7 93272558 93273026 + 1 NA intron (NM_001257998, intron 12 of 28) intron (NM_001257998, intron 12 of 28) 40426 NM_017667 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50 subunit of EARP/GARPII complex protein-coding 179.667-33 chr3 364631 365050 + 1 NA intron (NR_110739, intron 2 of 2) MIRb|SINE|MIR 20955 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 282.667-18 chr7 118564700 118565029 + 1 NA Intergenic L1MB7|LINE|L1 340160 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 155.833-65 chr7 124448848 124449427 + 1 NA Intergenic Intergenic -97041 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 361.667-4 chr16 10426036 10426654 + 1 NA intron (NM_001256160, intron 2 of 11) intron (NM_001256160, intron 2 of 11) 40284 NR_045816 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 158.5-18 chr13 64907321 64907647 + 1 NA Intergenic Intergenic -831473 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 320.5-7 chr9 90701292 90701920 + 1 NA Intergenic L2a|LINE|L2 -58782 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 153.333-65 chr5 52044368 52044632 + 1 NA TTS (NR_147166) TTS (NR_147166) 36469 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 218.333-15 chr14 64144257 64144599 + 1 NA intron (NM_015180, intron 83 of 114) intron (NM_015180, intron 83 of 114) -49303 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 233.667-9 chr14 81281543 81281977 + 1 NA intron (NM_001366850, intron 5 of 7) intron (NM_001366850, intron 5 of 7) -60370 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 151.5-16 chr11 84661532 84661895 + 1 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 59229 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 315.667-8 chr2 117428472 117429100 + 1 NA Intergenic Intergenic -385905 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 245.667-10 chr14 68181647 68182196 + 1 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 358329 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 168.667-68 chr6 68443724 68443902 + 1 NA Intergenic Intergenic -113914 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 166.833-27 chr2 240271255 240271707 + 1 NA Intergenic L1ME2|LINE|L1 -130823 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 578.333 chr17 60821255 60822652 + 1 NA intron (NM_001330413, intron 7 of 25) L1ME1|LINE|L1 144102 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 177.833-37 chr5 161933935 161934161 + 1 NA intron (NR_126372, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 67148 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 114.667-106 chr5 167997568 167997773 + 1 NA intron (NM_001080428, intron 3 of 24) MER58B|DNA|hAT-Charlie -168175 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 261.667-5 chr10 103147637 103148085 + 1 NA intron (NM_001351187, intron 3 of 21) L1MB7|LINE|L1 5960 NM_001351192 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 159.333-3 chr1 53154636 53154819 + 1 NA Intergenic Intergenic -12089 NR_109858 6512 Hs.104637 NM_006671 ENSG00000162383 SLC1A7 AAAT|EAAT5 solute carrier family 1 member 7 protein-coding 259.667-11 chr17 72402818 72403130 + 1 NA TTS (NR_152516) TTS (NR_152516) 60163 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 236.833-16 chr8 79334833 79335386 + 1 NA Intergenic Intergenic 2921 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 292.333-11 chr6 124851838 124852354 + 1 NA Intergenic L2|LINE|L2 -110449 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 229.667-30 chr7 15044834 15045180 + 1 NA Intergenic L1MB8|LINE|L1 -70149 NM_001350722 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 136.333-3 chr1 43200760 43201055 + 1 NA intron (NM_001195831, intron 9 of 23) intron (NM_001195831, intron 9 of 23) -28337 NM_001159936 10969 Hs.346868 NM_006824 ENSG00000117395 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 215.833-14 chr20 41447517 41447877 + 1 NA intron (NM_032221, intron 24 of 36) intron (NM_032221, intron 24 of 36) -80879 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 228.167-26 chr8 75398700 75399164 + 1 NA Intergenic L2|LINE|L2 -8717 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 183.5-54 chr7 29919373 29919667 + 1 NA TTS (NM_001145513) TTS (NM_001145513) 70281 NM_014766 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 252.833-7 chr18 50019036 50019297 + 1 NA intron (NM_001080467, intron 4 of 39) intron (NM_001080467, intron 4 of 39) 107397 NR_036204 100422865 NR_036204 ENSG00000283343 MIR4320 - microRNA 4320 ncRNA 180.833-12 chr13 33972897 33973158 + 1 NA Intergenic Intergenic 154878 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 126.333-68 chr20 32343863 32344005 + 1 NA Intergenic MIRc|SINE|MIR -14410 NM_001164603 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 158.167-28 chr2 227280887 227281190 + 1 NA intron (NM_000091, intron 31 of 51) intron (NM_000091, intron 31 of 51) 44126 NR_102371 654841 Hs.659982 NR_102371 ENSG00000236432 LOC654841 - uncharacterized LOC654841 ncRNA 113.833-10 chr11 47297287 47297402 + 1 NA intron (NM_130476, intron 22 of 32) intron (NM_130476, intron 22 of 32) -25234 NR_120569 101928943 Hs.664956 NR_120568 ENSG00000256746 LOC101928943 - uncharacterized LOC101928943 ncRNA 121.5-20 chr11 29238273 29238477 + 1 NA Intergenic L2c|LINE|L2 -356038 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 240.833-9 chr16 31705555 31706183 + 1 NA intron (NR_024034, intron 7 of 8) intron (NR_024034, intron 7 of 8) 5256 NR_024034 100132341 Hs.715792 NM_024048 ENSG00000131797 CLUHP3 C16orf67|KIAA0664L3|KIAA0664P3|URLC3 clustered mitochondria homolog pseudogene 3 pseudo 197.5-21 chr18 6647688 6648002 + 1 NA Intergenic THE1C|LTR|ERVL-MaLR -81871 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 137.5-65 chr4 18012548 18012935 + 1 NA intron (NR_158566, intron 1 of 5) intron (NR_158566, intron 1 of 5) 9014 NR_136669 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 177.667-8 chr10 89325001 89325287 + 1 NA Intergenic L1PA15|LINE|L1 -2853 NM_001289758 3437 Hs.47338 NM_001549 ENSG00000119917 IFIT3 CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 interferon induced protein with tetratricopeptide repeats 3 protein-coding 365.167 chr20 7123646 7124131 + 1 NA Intergenic Intergenic 130314 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 286.333-14 chr8 135743947 135744303 + 1 NA Intergenic Intergenic 286669 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 191.667-18 chr2 18943098 18943376 + 1 NA Intergenic Intergenic 83734 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 255.667-12 chr17 63019181 63019450 + 1 NA intron (NM_025185, intron 2 of 25) AluSz6|SINE|Alu 53080 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 227.667-7 chr11 83116763 83117093 + 1 NA Intergenic AluJr|SINE|Alu -40203 NM_001346413 51585 Hs.128959 NM_015885 ENSG00000165494 PCF11 - PCF11 cleavage and polyadenylation factor subunit protein-coding 213.5-18 chr2 105986786 105987076 + 1 NA Intergenic MER4E|LTR|ERV1 -78757 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 116.5-24 chr16 84681483 84681647 + 1 NA Intergenic Intergenic -18435 NM_005153 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 309.333-4 chr2 161102011 161102534 + 1 NA Intergenic Intergenic -34683 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 211.167-15 chr2 31566250 31566500 + 1 NA intron (NM_000348, intron 1 of 4) L1MEc|LINE|L1 14563 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 193.667-10 chr13 30594522 30594826 + 1 NA intron (NM_001370340, intron 1 of 4) L1PA17|LINE|L1 22913 NM_001370340 3146 Hs.434102 NM_002128 ENSG00000189403 HMGB1 HMG-1|HMG1|HMG3|SBP-1 high mobility group box 1 protein-coding 317.667-4 chr21 33958558 33959081 + 1 NA intron (NR_134558, intron 2 of 2) L1MEf|LINE|L1 -17563 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 146.5-68 chr5 36287390 36287694 + 1 NA intron (NM_001323279, intron 1 of 12) intron (NM_001323279, intron 1 of 12) 14360 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 245.5-8 chr18 41037428 41037897 + 1 NA Intergenic Intergenic 483015 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 198.167-6 chr13 104585731 104586024 + 1 NA Intergenic Intergenic -879990 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 168.333-42 chr4 39931485 39931778 + 1 NA intron (NM_001100399, intron 2 of 32) MLT1F|LTR|ERVL-MaLR 46280 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 157.667-6 chr1 182012825 182013116 + 1 NA Intergenic L1PB1|LINE|L1 48742 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 180.833-8 chr11 70033434 70033795 + 1 NA Intergenic L2b|LINE|L2 30310 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 247.667-8 chr15 88441000 88441341 + 1 NA Intergenic Intergenic 26218 NM_022163 26589 Hs.534261 NM_022163 ENSG00000259494 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 166.5-36 chr3 113883556 113883778 + 1 NA intron (NM_017577, intron 6 of 17) L1M4|LINE|L1 -13833 NM_001172105 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 160.5-52 chr6 133324040 133324288 + 1 NA intron (NM_172103, intron 2 of 18) intron (NM_172103, intron 2 of 18) 82665 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 249.833-11 chr4 42245168 42245559 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -92708 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 155.833-52 chr5 41959914 41960195 + 1 NA Intergenic L1MA8|LINE|L1 34773 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 147.333-68 chr5 90189037 90189202 + 1 NA intron (NR_120601, intron 4 of 5) intron (NR_120601, intron 4 of 5) 100952 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 301.667 chr10 55015915 55016638 + 1 NA intron (NM_001354404, intron 3 of 34) L1MA3|LINE|L1 -214985 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 123.333-5 chr1 94473914 94474123 + 1 NA intron (NM_002858, intron 5 of 22) intron (NM_002858, intron 5 of 22) 55629 NM_002858 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 260.667-23 chr8 82024264 82024655 + 1 NA Intergenic L1PA16|LINE|L1 -182173 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 164.167-2 chr1 227955849 227956194 + 1 NA Intergenic L1MD2|LINE|L1 -8089 NM_003395 7483 Hs.149504 NM_003395 ENSG00000143816 WNT9A WNT14 Wnt family member 9A protein-coding 276.5-9 chr4 10731802 10732104 + 1 NA Intergenic MER63B|DNA|hAT-Blackjack -47185 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 214.5-4 chr10 60261342 60261611 + 1 NA intron (NM_001204403, intron 8 of 43) intron (NM_001204403, intron 8 of 43) -120460 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 118.333-115 chr8 98895973 98896139 + 1 NA intron (NM_001256312, intron 1 of 12) intron (NM_001256312, intron 1 of 12) 46554 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 196.167-20 chr3 37174149 37174579 + 1 NA intron (NR_145514, intron 2 of 2) intron (NR_145514, intron 2 of 2) 218 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 310.333-6 chr22 26258621 26259032 + 1 NA intron (NM_001184776, intron 1 of 14) L2c|LINE|L2 89352 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 241.667-35 chr7 43257204 43257658 + 1 NA intron (NM_001287059, intron 2 of 27) intron (NM_001287059, intron 2 of 27) 106536 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 144.333-48 chr2 129530307 129530475 + 1 NA Intergenic L1MD2|LINE|L1 -256500 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 263.333-13 chr17 75911245 75911624 + 1 NA intron (NM_001319193, intron 28 of 28) AluJb|SINE|Alu -6334 NM_032478 64978 Hs.442609 NM_032478 ENSG00000204316 MRPL38 HSPC262|L38MT|MRP-L3|MRP-L38|RPML3 mitochondrial ribosomal protein L38 protein-coding 132.333-88 chr5 143636969 143637118 + 1 NA Intergenic Intergenic -42817 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 130.5-30 chr16 66005540 66005847 + 1 NA Intergenic LTR16C|LTR|ERVL -360998 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 174.667-72 chr8 134185839 134186060 + 1 NA Intergenic Intergenic 299453 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 153.333-17 chr13 113181490 113181804 + 1 NA intron (NM_001127202, intron 9 of 13) intron (NM_001127202, intron 9 of 13) 22993 NM_001256134 8858 Hs.1011 NM_003891 ENSG00000126231 PROZ PZ protein Z, vitamin K dependent plasma glycoprotein protein-coding 179.667-20 chr17 67701868 67702141 + 1 NA Intergenic Intergenic -15829 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 148.333-98 chr8 19698485 19698656 + 1 NA intron (NR_148898, intron 1 of 9) intron (NR_148898, intron 1 of 9) -15809 NR_024040 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 124.667-59 chr2 68539263 68539478 + 1 NA intron (NM_173545, intron 7 of 9) MLT1B|LTR|ERVL-MaLR 71785 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 210.667-22 chr2 6202405 6202680 + 1 NA Intergenic Intergenic 172880 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 211.333-4 chr1 82256511 82256902 + 1 NA Intergenic Intergenic 454253 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 214.5-38 chr7 101218034 101218364 + 1 NA promoter-TSS (NM_006349) promoter-TSS (NM_006349) 34 NM_006349 10467 Hs.211079 NM_006349 ENSG00000106400 ZNHIT1 CG1I|ZNFN4A1 zinc finger HIT-type containing 1 protein-coding 208.667-32 chr4 27981638 27982017 + 1 NA Intergenic Intergenic 764348 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 124.833-31 chr18 46758844 46759061 + 1 NA Intergenic MIR|SINE|MIR -1899 NM_001307986 29906 Hs.465025 NM_013305 ENSG00000101638 ST8SIA5 SIAT8-E|SIAT8E|ST8SiaV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 protein-coding 214.667-6 chr10 101866240 101866667 + 1 NA intron (NM_024541, intron 24 of 25) Tigger2|DNA|TcMar-Tigger -22533 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 264.333-18 chr9 94836235 94836739 + 1 NA intron (NM_032823, intron 5 of 14) L1MD|LINE|L1 26525 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 161.667-75 chr7 7974730 7975049 + 1 NA intron (NM_138426, intron 1 of 7) intron (NM_138426, intron 1 of 7) 6093 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 236.5-12 chr12 113510912 113511410 + 1 NA Intergenic Intergenic 39158 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 152.167-8 chr10 60381138 60381315 + 1 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 8649 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 141.333-92 chr7 41732502 41732647 + 1 NA intron (NR_027118, intron 2 of 3) intron (NR_027118, intron 2 of 3) -29484 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 310.5-6 chr12 103943447 103943994 + 1 NA intron (NM_003299, intron 13 of 17) intron (NM_003299, intron 13 of 17) 13295 NR_037425 100500842 NR_037425 ENSG00000284503 MIR3652 - microRNA 3652 ncRNA 196.667-37 chr3 94189589 94189876 + 1 NA Intergenic L1MC1|LINE|L1 126671 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 138.667-29 chr14 47912319 47912496 + 1 NA Intergenic MamGyp-int|LTR|Gypsy -117393 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 150.333-68 chr3 70966606 70966862 + 1 NA intron (NR_146142, intron 18 of 19) intron (NR_146142, intron 18 of 19) 98190 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 147.333-102 chrX 129096730 129097015 + 1 NA Intergenic L1ME2z|LINE|L1 426618 NM_001282874 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 261.667-18 chr16 11893219 11893648 + 1 NA intron (NM_002094, intron 5 of 14) (AAGTAA)n|Simple_repeat|Simple_repeat 22523 NM_001130006 2935 Hs.528780 NM_002094 ENSG00000103342 GSPT1 551G9.2|ETF3A|GST1|eRF3a G1 to S phase transition 1 protein-coding 232.5-35 chr7 13536376 13536749 + 1 NA Intergenic L2a|LINE|L2 449952 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 164.333-52 chr4 99665255 99665492 + 1 NA Intergenic Intergenic -10694 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 170.333-17 chr11 85137100 85137287 + 1 NA intron (NM_001142699, intron 5 of 27) intron (NM_001142699, intron 5 of 27) -213772 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 148.333-109 chr8 134722543 134722778 + 1 NA Intergenic MIR3|SINE|MIR -9629 NM_001289394 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 210.333-43 chr9 30251012 30251284 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR 157306 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 194.5-5 chr14 43153812 43154081 + 1 NA Intergenic Intergenic 1353337 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 331.333-6 chr22 29913310 29913761 + 1 NA intron (NM_153051, intron 1 of 18) L1ME1|LINE|L1 30361 NM_021090 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 193.333-38 chr3 8775414 8775804 + 1 NA Intergenic Intergenic -5995 NM_001354653 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 117.5-32 chr20 24548861 24549021 + 1 NA intron (NM_024893, intron 2 of 3) L1MA5A|LINE|L1 78980 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 143.5-13 chr12 5441612 5441856 + 1 NA intron (NM_001102654, intron 1 of 1) intron (NM_001102654, intron 1 of 1) 9626 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 173.667-12 chr12 80680372 80680617 + 1 NA TTS (NM_001145026) TTS (NM_001145026) -27140 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 238.833-3 chr14 61685427 61685833 + 1 NA intron (NR_047116, intron 1 of 1) intron (NR_047116, intron 1 of 1) -9883 NM_001530 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 132.5-47 chr2 60062034 60062205 + 1 NA Intergenic Intergenic 320917 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 252.333-20 chr5 67642833 67643209 + 1 NA intron (NR_147169, intron 1 of 2) intron (NR_147169, intron 1 of 2) 3768 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 113.833-85 chr7 128742946 128743123 + 1 NA intron (NR_074086, intron 1 of 4) MER33|DNA|hAT-Charlie 3675 NM_001130674 813 Hs.7753 NM_001219 ENSG00000128595 CALU - calumenin protein-coding 143.333-82 chr7 24356369 24356589 + 1 NA Intergenic Intergenic 72289 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 191.167-24 chr5 114734002 114734422 + 1 NA intron (NR_130785, intron 1 of 12) L1M5|LINE|L1 39201 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 124.667-99 chr5 93163789 93163913 + 1 NA Intergenic Intergenic 407492 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 281.333-10 chr4 54767521 54767936 + 1 NA Intergenic L1MEg|LINE|L1 109800 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 245.167-19 chr9 125446770 125447023 + 1 NA intron (NM_001006619, intron 9 of 10) intron (NM_001006619, intron 9 of 10) 185070 NM_001282679 26130 Hs.42376 NM_015635 ENSG00000165219 GAPVD1 GAPEX5|GAPex-5|RAP6 GTPase activating protein and VPS9 domains 1 protein-coding 143.333-35 chr2 118182779 118183118 + 1 NA TTS (NR_144530) TTS (NR_144530) 3438 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 170.333-52 chr4 30326611 30327018 + 1 NA Intergenic L1PREC2|LINE|L1 -393555 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 177.333 chr1 42218565 42218802 + 1 NA intron (NM_001198850, intron 5 of 12) L2b|LINE|L2 -53938 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 203.333-25 chr21 23417638 23418183 + 1 NA Intergenic Intergenic -33075 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 332.167-8 chr6 112169774 112170560 + 1 NA intron (NM_001105206, intron 12 of 38) intron (NM_001105206, intron 12 of 38) -66429 NR_121193 101927640 Hs.510007 NR_121193 LOC101927640 - uncharacterized LOC101927640 ncRNA 149.333-36 chr14 62063639 62063863 + 1 NA intron (NM_001367661, intron 4 of 8) intron (NM_001367661, intron 4 of 8) -53606 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 198.667-8 chr10 53633565 53634053 + 1 NA Intergenic Intergenic -852421 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 248.333-14 chr9 6897016 6897330 + 1 NA intron (NR_148680, intron 8 of 21) intron (NR_148680, intron 8 of 21) 139823 NM_001354000 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 169.667-23 chr14 70323842 70324129 + 1 NA Intergenic L1MCa|LINE|L1 35698 NM_016468 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 172.333-64 chr5 110625079 110625382 + 1 NA intron (NM_001039763, intron 7 of 13) intron (NM_001039763, intron 7 of 13) 101441 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 263.333-15 chr19 28766995 28767516 + 1 NA Intergenic L1PA13|LINE|L1 -39561 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 299.167-9 chr8 86242057 86242441 + 1 NA Intergenic L1MC2|LINE|L1 -11868 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 160.333-42 chr4 31146082 31146472 + 1 NA 3' UTR (NM_001173523, exon 3 of 3) 3' UTR (NM_001173523, exon 3 of 3) -24867 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 160.5-3 chr10 9678695 9678929 + 1 NA Intergenic Intergenic -379910 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 179.667-48 chr6 165599513 165599863 + 1 NA intron (NM_006661, intron 1 of 22) intron (NM_006661, intron 1 of 22) 62412 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 245.333-12 chr21 22879726 22880033 + 1 NA Intergenic Intergenic -199405 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 267.333-15 chr20 20293799 20294302 + 1 NA intron (NM_015585, intron 24 of 26) intron (NM_015585, intron 24 of 26) -74054 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 307.5-5 chr18 46638000 46638383 + 1 NA intron (NM_144612, intron 4 of 39) L1ME4a|LINE|L1 18842 NM_144612 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 172.333-47 chr21 36002451 36003038 + 1 NA intron (NR_110418, intron 1 of 5) intron (NR_110418, intron 1 of 5) 1923 NR_110418 101928269 Hs.589909 NR_110418 LOC101928269 - uncharacterized LOC101928269 ncRNA 222.5-31 chr8 71684212 71684554 + 1 NA Intergenic L2b|LINE|L2 -136289 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 194.5-23 chr21 44879970 44880241 + 1 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -6202 NR_104597 754 Hs.474010 NM_004339 ENSG00000183255 PTTG1IP C21orf1|C21orf3|PBF PTTG1 interacting protein protein-coding 165.5-51 chr6 53368189 53368401 + 1 NA Intergenic L1MB4|LINE|L1 -19116 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 159.833-47 chr7 130001132 130001415 + 1 NA Intergenic AluSp|SINE|Alu -48313 NM_001202498 7328 Hs.643548 NM_003344 ENSG00000186591 UBE2H E2-20K|GID3|UBC8|UBCH|UBCH2 ubiquitin conjugating enzyme E2 H protein-coding 268.333-3 chr1 119959881 119960195 + 1 NA intron (NM_001200001, intron 11 of 21) Charlie1a|DNA|hAT-Charlie -63523 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 316.833-8 chr8 119793031 119793393 + 1 NA intron (NM_003184, intron 10 of 25) intron (NM_003184, intron 10 of 25) 39629 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 173.333-26 chr18 1970090 1970285 + 1 NA Intergenic Intergenic 601318 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 246.667-11 chr19 49967935 49968288 + 1 NA Intergenic AluSx|SINE|Alu -1553 NR_145574 400709 Hs.568076 NM_001348364 SIGLEC16 SIGLECP16|Siglec-P16 sialic acid binding Ig like lectin 16 (gene/pseudogene) protein-coding 120.5-40 chr16 47606931 47607138 + 1 NA intron (NM_001031835, intron 14 of 31) L4_B_Mam|LINE|RTE-X 145703 NM_001031835 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 286.333-8 chr3 189357310 189357631 + 1 NA Intergenic Intergenic -116876 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 198.333-17 chr17 62813906 62814109 + 1 NA intron (NR_135634, intron 1 of 1) L1M2|LINE|L1 5505 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 232.5-16 chr17 62042756 62043145 + 1 NA intron (NM_005121, intron 3 of 29) AluSz6|SINE|Alu 22328 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 159.667-72 chr5 63049710 63049967 + 1 NA Intergenic Intergenic 471019 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 238.667-5 chr12 101868643 101869189 + 1 NA Intergenic AluSx|SINE|Alu -8664 NM_018370 55332 Hs.525634 NM_018370 ENSG00000136048 DRAM1 DRAM DNA damage regulated autophagy modulator 1 protein-coding 180.5-41 chr5 14206154 14206562 + 1 NA intron (NM_007118, intron 1 of 56) AluJb|SINE|Alu 63016 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 178.5-74 chr8 118189504 118189717 + 1 NA non-coding (NR_109794, exon 5 of 5) non-coding (NR_109794, exon 5 of 5) -77791 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 259.333-26 chrX 80603984 80604501 + 1 NA Intergenic Intergenic 183795 NM_152630 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 283.333-12 chr7 93880716 93881096 + 1 NA Intergenic L1MA9|LINE|L1 9847 NM_001271004 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 174.833-44 chr6 80143397 80143590 + 1 NA intron (NR_134945, intron 3 of 10) intron (NR_134945, intron 3 of 10) 36822 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 175.667 chr1 42400791 42401047 + 1 NA intron (NM_173642, intron 2 of 4) L1MB3|LINE|L1 20127 NM_173642 284716 Hs.420244 NM_173642 ENSG00000177181 RIMKLA FAM80A|NAAGS|NAAGS-II ribosomal modification protein rimK like family member A protein-coding 117.833-80 chr8 56619036 56619329 + 1 NA Intergenic MIRb|SINE|MIR -59359 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 131.5-39 chr2 174878539 174878747 + 1 NA intron (NM_001025201, intron 6 of 12) intron (NM_001025201, intron 6 of 12) -31025 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 456.5 chr21 22902235 22903105 + 1 NA Intergenic AluSq2|SINE|Alu -176614 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 184.167-45 chr8 87343590 87343856 + 1 NA intron (NM_173538, intron 8 of 10) L1ME4a|LINE|L1 477308 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 143.667-107 chr8 133747637 133747911 + 1 NA Intergenic MIRb|SINE|MIR 29578 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 155.333-84 chr5 114070902 114071424 + 1 NA Intergenic MLT1N2|LTR|ERVL-MaLR -290907 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 312.667-7 chr4 111963637 111964005 + 1 NA Intergenic MER58B|DNA|hAT-Charlie -181633 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 216.667-16 chr14 83121133 83121440 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 478654 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 221.667-26 chr4 110034473 110034741 + 1 NA Intergenic MIR|SINE|MIR 121724 NM_001963 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 137.5-78 chr5 6051682 6051832 + 1 NA Intergenic L1M4a1|LINE|L1 285535 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 125.333-113 chr7 53041996 53042199 + 1 NA Intergenic HSMAR2|DNA|TcMar-Mariner 6464 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 165.5-5 chr10 30407199 30407514 + 1 NA Intergenic AluJb|SINE|Alu -26665 NM_001244134 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 187.333-78 chr7 91865031 91865451 + 1 NA Intergenic Intergenic 15461 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 117.167-31 chr17 61904355 61904735 + 1 NA exon (NM_020748, exon 9 of 25) exon (NM_020748, exon 9 of 25) 23437 NM_001351695 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 243.5-4 chr12 39151504 39151837 + 1 NA Intergenic L1MA2|LINE|L1 -246079 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 190.333-19 chr15 70314438 70314735 + 1 NA Intergenic MER4D0|LTR|ERV1 191342 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 131.667-133 chr9 35978877 35979064 + 1 NA Intergenic L1MDa|LINE|L1 -20816 NM_019897 56656 Hs.553540 NM_019897 ENSG00000278889 OR2S2 OR37A|OST715 olfactory receptor family 2 subfamily S member 2 (gene/pseudogene) protein-coding 136.667-18 chr12 66076653 66076812 + 1 NA Intergenic MIRb|SINE|MIR -45666 NR_146530 105369810 NR_146530 ENSG00000256259 LINC02425 - long intergenic non-protein coding RNA 2425 ncRNA 303.5-5 chr6 4842188 4842580 + 1 NA intron (NM_001143970, intron 1 of 6) L1PB1|LINE|L1 6286 NM_001143970 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 115.5-76 chr4 154294838 154294969 + 1 NA intron (NM_001358235, intron 13 of 19) MamRep605|LTR?|LTR? 196896 NM_001358235 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 145.333-90 chr8 119183921 119184098 + 1 NA Intergenic L1MB8|LINE|L1 -24354 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 232.333-30 chr6 101508483 101508824 + 1 NA intron (NM_001166247, intron 1 of 16) intron (NM_001166247, intron 1 of 16) 109668 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 280.5-7 chr2 20924341 20924892 + 1 NA Intergenic MIRc|SINE|MIR -101486 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 139.333-38 chr15 55401113 55401310 + 1 NA intron (NR_037923, intron 8 of 15) L1ME3Cz|LINE|L1 7148 NM_020739 9236 Hs.285051 NM_004748 ENSG00000260916 CCPG1 CPR8 cell cycle progression 1 protein-coding 205.5-15 chr18 8027827 8028185 + 1 NA intron (NM_002845, intron 7 of 30) AluSz6|SINE|Alu 339028 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 196.333-58 chrX 81717156 81717421 + 1 NA Intergenic LTR41B|LTR|ERVL 515186 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 251.333 chr1 69785320 69785658 + 1 NA intron (NM_001370785, intron 3 of 26) L1MEd|LINE|L1 -133833 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 199.167-21 chr20 47551485 47551907 + 1 NA intron (NM_181659, intron 1 of 22) intron (NM_181659, intron 1 of 22) 49809 NM_181659 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 306.667-8 chr6 133537496 133538033 + 1 NA intron (NR_109982, intron 5 of 8) intron (NR_109982, intron 5 of 8) -283383 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 160.167-57 chr6 125773542 125773875 + 1 NA Intergenic L1ME3E|LINE|L1 -7407 NM_001199620 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 153.667-40 chr2 104828373 104828682 + 1 NA intron (NR_037883, intron 1 of 3) intron (NR_037883, intron 1 of 3) 22949 NR_131234 100506421 Hs.437281 NR_037883 ENSG00000233639 PANTR1 LINC01158|linc-Brn1a|linc-POU3F3 POU3F3 adjacent non-coding transcript 1 ncRNA 165.167-37 chr4 65852373 65852674 + 1 NA Intergenic Intergenic -182028 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 206.5-33 chr6 163878308 163878619 + 1 NA Intergenic Intergenic -206979 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 127.667-16 chr11 41402029 41402331 + 1 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 57456 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 264.333-13 chr5 17437463 17437783 + 1 NA intron (NR_134273, intron 1 of 1) intron (NR_134273, intron 1 of 1) 886 NR_134273 101929544 Hs.23725 NR_134273 ENSG00000248455 LINC02217 - long intergenic non-protein coding RNA 2217 ncRNA 246.333-13 chr18 3402375 3402796 + 1 NA Intergenic Intergenic -9342 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 174.5-34 chr5 17027071 17027352 + 1 NA Intergenic AluSx1|SINE|Alu -90923 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 143.667-5 chr1 77947226 77947389 + 1 NA intron (NR_130152, intron 20 of 20) intron (NR_130152, intron 20 of 20) 31765 NR_146540 8880 Hs.567380 NM_003902 ENSG00000162613 FUBP1 FBP|FUBP|hDH V far upstream element binding protein 1 protein-coding 213.667-4 chr11 14789167 14789427 + 1 NA intron (NM_000922, intron 4 of 15) intron (NM_000922, intron 4 of 15) 102908 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 122.333-39 chr15 67914306 67914509 + 1 NA Intergenic Intergenic -74362 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 156.667-74 chr5 144185453 144185687 + 1 NA intron (NM_020768, intron 2 of 3) MLT1K|LTR|ERVL-MaLR 14697 NM_020768 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 129.333-100 chr8 88334633 88334832 + 1 NA Intergenic Intergenic -7249 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 230.333-37 chr8 135779026 135779458 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR 321786 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 174.667-30 chr18 42917982 42918405 + 1 NA intron (NM_002930, intron 4 of 4) L2a|LINE|L2 197492 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 142.5-74 chr9 100308578 100308796 + 1 NA intron (NM_001161584, intron 12 of 14) intron (NM_001161584, intron 12 of 14) 43884 NM_001161584 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 286.667-9 chr20 59234582 59235032 + 1 NA intron (NM_178457, intron 3 of 4) L1MC3|LINE|L1 43787 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 165.167-10 chr12 59936118 59936505 + 1 NA Intergenic L1MEf|LINE|L1 246941 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 286.667-12 chr4 35638956 35639352 + 1 NA Intergenic Intergenic 604785 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 124.667-90 chr5 14593640 14593891 + 1 NA intron (NM_019018, intron 1 of 7) intron (NM_019018, intron 1 of 7) 11973 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 175.5-36 chr3 44144638 44144862 + 1 NA Intergenic Intergenic 30538 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 203.333-42 chr5 107309271 107309604 + 1 NA Intergenic L2a|LINE|L2 -298423 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 228.5-28 chr5 85614700 85615118 + 1 NA Intergenic Intergenic -667535 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 235.167-4 chr12 20775543 20776080 + 1 NA Intergenic L1M2|LINE|L1 -34894 NM_019844 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 178.5-57 chr5 25640870 25641138 + 1 NA Intergenic Intergenic 450051 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 139.5-79 chr9 77765756 77766014 + 1 NA intron (NM_002072, intron 5 of 6) L1MB3|LINE|L1 -117563 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 255.667-13 chr18 70031257 70031627 + 1 NA intron (NM_001318520, intron 39 of 47) intron (NM_001318520, intron 39 of 47) -74643 NM_001303619 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 286.167-3 chr14 73698648 73699169 + 1 NA 3' UTR (NM_031427, exon 8 of 8) 3' UTR (NM_031427, exon 8 of 8) 15476 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 PNMA family member 1 protein-coding 127.833-68 chr7 15769380 15769779 + 1 NA Intergenic L1MA9|LINE|L1 81201 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 162.667-13 chr12 43156604 43156787 + 1 NA intron (NR_146866, intron 1 of 3) intron (NR_146866, intron 1 of 3) 1380 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 245.833-13 chr4 33069650 33070262 + 1 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 718918 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 219.5-26 chr3 26482128 26482887 + 1 NA Intergenic Intergenic -140299 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 173.333-54 chr5 33303790 33304063 + 1 NA Intergenic Intergenic 74191 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 217.667-7 chr12 17653083 17653424 + 1 NA Intergenic Intergenic -20046 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 162.333-12 chr12 40761370 40761749 + 1 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) -66379 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 238.333-21 chr3 94055955 94056368 + 1 NA TTS (NM_001174150) TTS (NM_001174150) 6755 NM_001195643 200895 Hs.718516 NM_176815 ENSG00000178700 DHFR2 DHFRL1|DHFRP4 dihydrofolate reductase 2 protein-coding 237.667-10 chr4 60891935 60892256 + 1 NA Intergenic Intergenic -30524 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 215.667-9 chr10 103942442 103942908 + 1 NA Intergenic AluSx1|SINE|Alu -24465 NM_001304743 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 156.5-63 chr4 146507855 146508130 + 1 NA intron (NM_001317817, intron 2 of 3) intron (NM_001317817, intron 2 of 3) 13948 NR_133924 84068 Hs.659209 NM_032128 ENSG00000120519 SLC10A7 C4orf13|P7|SSASKS solute carrier family 10 member 7 protein-coding 279.833-9 chr8 26394601 26395068 + 1 NA intron (NM_004331, intron 2 of 5) Charlie1b|DNA|hAT-Charlie 4421 NM_001330491 665 Hs.131226 NM_004331 ENSG00000104765 BNIP3L BNIP3a|NIX BCL2 interacting protein 3 like protein-coding 161.167-34 chr2 189072096 189072335 + 1 NA intron (NM_000393, intron 17 of 53) intron (NM_000393, intron 17 of 53) 60896 NR_036076 100422908 NR_036076 ENSG00000264725 MIR3129 mir-3129 microRNA 3129 ncRNA 236.833-12 chr3 98513553 98513913 + 1 NA Intergenic Intergenic 9169 NM_001040181 56650 Hs.531371 NM_019895 ENSG00000080822 CLDND1 C3orf4|GENX-3745|Z38 claudin domain containing 1 protein-coding 249.5-36 chr9 10133540 10133925 + 1 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 334340 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 155.167-45 chr7 99910727 99910929 + 1 NA intron (NM_033091, intron 1 of 5) intron (NM_033091, intron 1 of 5) 8702 NM_033091 89122 Hs.50749 NM_033017 ENSG00000146833 TRIM4 RNF87 tripartite motif containing 4 protein-coding 187.5-58 chrX 97642404 97642712 + 1 NA Intergenic L2a|LINE|L2 -78023 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 207.667-40 chr5 88816290 88816614 + 1 NA intron (NM_001131005, intron 3 of 10) intron (NM_001131005, intron 3 of 10) 7475 NM_001193348 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 298.833-2 chr14 51198417 51198903 + 1 NA Intergenic Intergenic -41587 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 167.167-58 chr8 97062082 97062393 + 1 NA intron (NM_016134, intron 6 of 7) intron (NM_016134, intron 6 of 7) 215691 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 167.833-40 chr3 165272096 165272387 + 1 NA intron (NR_125764, intron 1 of 5) Zaphod|DNA|hAT-Tip100 65281 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 345.833 chr6 148624796 148625241 + 1 NA Intergenic AluSx|SINE|Alu 115867 NM_001346509 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 116.333-49 chr2 29428604 29428864 + 1 NA intron (NM_004304, intron 4 of 28) L1M4b|LINE|L1 46643 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 150.5-72 chr7 21541840 21542096 + 1 NA Intergenic Intergenic -1071 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 162.833-43 chr7 13869524 13869731 + 1 NA Intergenic Intergenic 116887 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 216.333-23 chr2 214606079 214606327 + 1 NA Intergenic Intergenic 96021 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 149.167-64 chr8 88027744 88028034 + 1 NA Intergenic Intergenic -153874 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 242.167-6 chr10 44373050 44373499 + 1 NA 3' UTR (NM_000609, exon 4 of 4) 3' UTR (NM_000609, exon 4 of 4) 11823 NM_199168 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 277.333-7 chr2 35477009 35477378 + 1 NA Intergenic Intergenic 5788 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 207.333-28 chr2 143761292 143761751 + 1 NA intron (NM_018460, intron 13 of 13) intron (NM_018460, intron 13 of 13) -175546 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 249.5-6 chr11 106439701 106440165 + 1 NA Intergenic Intergenic 188526 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 208.5-43 chr6 123867284 123867526 + 1 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 63540 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 219.667 chr1 82800222 82800486 + 1 NA Intergenic Intergenic -102829 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 279.167-13 chr7 7729706 7730501 + 1 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -11496 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 196.333-27 chr3 66426886 66427322 + 1 NA intron (NM_015541, intron 3 of 18) intron (NM_015541, intron 3 of 18) 73317 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 193.333-7 chr10 32470025 32470366 + 1 NA intron (NR_109827, intron 6 of 8) intron (NR_109827, intron 6 of 8) 24055 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 205.667-25 chr17 71917003 71917301 + 1 NA Intergenic Intergenic 108827 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 357.667-2 chr2 69116800 69117251 + 1 NA intron (NM_032208, intron 10 of 17) intron (NM_032208, intron 10 of 17) 13343 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 223.833-12 chr11 115943813 115944188 + 1 NA Intergenic Intergenic -183800 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 223.833-3 chr1 73397035 73397278 + 1 NA Intergenic Intergenic 90986 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 159.667-74 chr5 125518012 125518354 + 1 NA intron (NR_109887, intron 2 of 3) L1ME2|LINE|L1 24922 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 209.667-12 chr15 49634303 49634618 + 1 NA intron (NM_020234, intron 4 of 5) intron (NM_020234, intron 4 of 5) 13412 NM_001144955 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 238.333-8 chr11 76021631 76022002 + 1 NA intron (NM_003369, intron 12 of 14) AluJr|SINE|Alu 184686 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 186.333-18 chr14 20542692 20542995 + 1 NA Intergenic L2b|LINE|L2 18088 NM_001110361 390443 Hs.533972 NM_001001673 ENSG00000188655 RNASE9 HEL128|RAK1|h461 ribonuclease A family member 9 (inactive) protein-coding 191.667-32 chr3 1646031 1646255 + 1 NA Intergenic Intergenic -452660 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 262.833 chr10 6412735 6413181 + 1 NA intron (NM_001323267, intron 17 of 17) AluY|SINE|Alu 62642 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 158.667-58 chr3 66379603 66379795 + 1 NA TTS (NM_173471) TTS (NM_173471) 120722 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 152.667-58 chr3 115691077 115691362 + 1 NA intron (NM_002045, intron 2 of 2) intron (NM_002045, intron 2 of 2) 67709 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 171.667-86 chr8 105769243 105769463 + 1 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 291150 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 184.333-64 chr8 84685127 84685379 + 1 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -20674 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 140.5-77 chr8 113929338 113929497 + 1 NA Intergenic Intergenic -492478 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 182.5-7 chr11 44644115 44644299 + 1 NA Intergenic L1ME1|LINE|L1 78544 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 257.333-21 chr6 54565169 54565919 + 1 NA Intergenic Intergenic 257103 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 139.5-40 chr3 127272243 127272447 + 1 NA Intergenic L1MEd|LINE|L1 15701 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 206.833-12 chr2 34539954 34540337 + 1 NA Intergenic L1M2|LINE|L1 -137412 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 118.667-102 chr6 90688494 90688687 + 1 NA Intergenic Intergenic -101518 NM_145331 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 128.5-34 chr19 28296856 28297102 + 1 NA Intergenic L1PA16|LINE|L1 -309709 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 150.667-94 chr8 126587012 126587213 + 1 NA Intergenic Intergenic -28634 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 188.5-44 chr5 81367473 81367724 + 1 NA intron (NM_130767, intron 3 of 14) L1MEc|LINE|L1 26536 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 162.5-75 chr9 19277688 19277975 + 1 NA intron (NR_073201, intron 2 of 31) L1M4|LINE|L1 47138 NM_001330640 55667 Hs.249591 NM_017925 ENSG00000137145 DENND4C C9orf55|C9orf55B|RAB10GEF|bA513M16.3 DENN domain containing 4C protein-coding 259.667-26 chr8 24185298 24185601 + 1 NA Intergenic L1MC1|LINE|L1 -108591 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 136.333-57 chr21 33312081 33312431 + 1 NA Intergenic HAL1ME|LINE|L1 -12714 NM_000629 3454 Hs.529400 NM_000629 ENSG00000142166 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon alpha and beta receptor subunit 1 protein-coding 129.5-49 chr2 143978018 143978234 + 1 NA intron (NM_001354353, intron 7 of 9) intron (NM_001354353, intron 7 of 9) 41059 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 256.333-2 chr1 95589979 95590295 + 1 NA Intergenic Intergenic 80021 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 164.667-44 chr3 15754952 15755294 + 1 NA intron (NM_001349279, intron 4 of 28) AluSq2|SINE|Alu 1424 NM_001195099 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 261.5-5 chr12 75048977 75049481 + 1 NA intron (NM_001260498, intron 3 of 4) intron (NM_001260498, intron 3 of 4) 160519 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 121.333-114 chr9 5838941 5839187 + 1 NA Intergenic Intergenic -5947 NM_024896 79956 Hs.591078 NM_024896 ENSG00000099219 ERMP1 FXNA|KIAA1815|bA207C16.3 endoplasmic reticulum metallopeptidase 1 protein-coding 169.333-73 chr8 132510973 132511152 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -29967 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 154.5-24 chr14 71380367 71380598 + 1 NA intron (NM_001354285, intron 2 of 24) intron (NM_001354285, intron 2 of 24) -17855 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 250.333-4 chr10 19096778 19097075 + 1 NA intron (NM_001142308, intron 4 of 39) intron (NM_001142308, intron 4 of 39) 48125 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 175.333-37 chr3 52271893 52272245 + 1 NA intron (NM_025222, intron 1 of 8) AluSx|SINE|Alu -3708 NR_029660 406890 NR_029660 ENSG00000199150 MIRLET7G LET7G|MIRNLET7G|hsa-let-7g|let-7g microRNA let-7g ncRNA 144.667-35 chr13 50079420 50079609 + 1 NA intron (NR_152566, intron 1 of 13) intron (NR_152566, intron 1 of 13) 2527 NR_152569 8847 Hs.547964 NR_002612 ENSG00000231607 DLEU2 ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS deleted in lymphocytic leukemia 2 ncRNA 173.167-51 chr8 88137372 88137915 + 1 NA intron (NM_005941, intron 4 of 9) L1ME3A|LINE|L1 189840 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 216.5-25 chr5 147598125 147598408 + 1 NA intron (NR_038902, intron 3 of 3) AluSx4|SINE|Alu 38272 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 343.333-5 chr8 81945590 81945944 + 1 NA Intergenic Intergenic -103481 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 176.667-21 chr13 84461027 84461320 + 1 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) 320571 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 167.333-46 chr3 158779030 158779302 + 1 NA Intergenic Intergenic -22888 NM_001167903 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 154.333-63 chr5 141466363 141466534 + 1 NA intron (NM_003735, intron 1 of 3) HSMAR2|DNA|TcMar-Mariner -9518 NM_002588 5098 Hs.368160 NM_002588 ENSG00000240184 PCDHGC3 PC43|PCDH-GAMMA-C3|PCDH2 protocadherin gamma subfamily C, 3 protein-coding 184.667-23 chr16 59405645 59405836 + 1 NA Intergenic Intergenic 349451 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 231.667-16 chr18 727246 727896 + 1 NA intron (NM_005433, intron 11 of 11) L1MEg|LINE|L1 -14907 NR_148707 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 FUCD|RTS|TYMSAS enolase superfamily member 1 protein-coding 290.5-17 chrX 87744715 87745250 + 1 NA Intergenic Intergenic 227180 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 164.167-55 chr6 55560004 55560308 + 1 NA intron (NR_109867, intron 1 of 3) intron (NR_109867, intron 1 of 3) 19058 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 146.167-64 chr6 120344582 120344730 + 1 NA Intergenic Intergenic 329477 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 169.5-26 chr17 78409456 78409742 + 1 NA intron (NR_110601, intron 6 of 8) intron (NR_110601, intron 6 of 8) 30950 NR_110601 9489 Hs.654671 NM_024419 ENSG00000087157 PGS1 - phosphatidylglycerophosphate synthase 1 protein-coding 231.5-11 chr3 56456492 56456829 + 1 NA intron (NR_132749, intron 1 of 17) Tigger8|DNA|TcMar-Tigger 11807 NM_015576 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 310.833-7 chr8 31207697 31208296 + 1 NA Intergenic Intergenic -174640 NM_001323312 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 125.333-96 chr5 120784555 120784757 + 1 NA Intergenic L1MA4|LINE|L1 253192 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 188.167-36 chr5 6047126 6047559 + 1 NA Intergenic Intergenic 289950 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 294.667 chr11 12962960 12963497 + 1 NA Intergenic Intergenic 26320 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 213.167-14 chr2 148845190 148845587 + 1 NA Intergenic L1PA16|LINE|L1 -29839 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 139.667-94 chr8 117314544 117314692 + 1 NA Intergenic GA-rich|Low_complexity|Low_complexity 179623 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 115.667-12 chr10 62733390 62733570 + 1 NA Intergenic Intergenic -71240 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 151.333-72 chr5 66516692 66516878 + 1 NA Intergenic Intergenic -5181 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 250.5-23 chr8 81977271 81977706 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -135202 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 147.333-42 chr2 123376112 123376441 + 1 NA Intergenic LTR41|LTR|ERVL -302795 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 277.5-17 chr8 132257854 132258302 + 1 NA intron (NM_004519, intron 1 of 14) L1M4|LINE|L1 -152813 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 199.667-25 chr2 73139999 73140311 + 1 NA Intergenic L1MB7|LINE|L1 -27207 NM_015470 26056 Hs.24557 NM_015470 ENSG00000135631 RAB11FIP5 GAF1|RIP11|pp75 RAB11 family interacting protein 5 protein-coding 270.667-22 chr8 88707239 88707686 + 1 NA Intergenic Intergenic -379979 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 147.833-20 chr14 67356507 67356746 + 1 NA intron (NM_015994, intron 1 of 8) MIR3|SINE|MIR 3178 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 220.333-26 chr5 158376549 158376944 + 1 NA intron (NR_109888, intron 1 of 6) intron (NR_109888, intron 1 of 6) 33027 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 314.167-7 chr5 17813146 17813659 + 1 NA intron (NR_134286, intron 2 of 7) L1MA8|LINE|L1 6128 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 207.333-29 chr2 163894788 163895005 + 1 NA Intergenic MER6A|DNA|TcMar-Tigger -158888 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 153.5-76 chr8 87643285 87643564 + 1 NA Intergenic L2|LINE|L2 230591 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 268.333-15 chr8 90895160 90895651 + 1 NA intron (NM_022351, intron 5 of 12) intron (NM_022351, intron 5 of 12) 89672 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 227.5-29 chr6 52653539 52653955 + 1 NA Intergenic L3|LINE|CR1 -10654 NR_024405 730101 Hs.7921 NR_024403 ENSG00000216775 LOC730101 - uncharacterized LOC730101 ncRNA 308.833-3 chr7 34621978 34622505 + 1 NA intron (NR_033664, intron 2 of 4) LTR50|LTR|ERVL -35977 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 136.667-77 chr5 3768850 3769025 + 1 NA Intergenic Intergenic 173105 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 245.333-23 chr8 3426725 3427025 + 1 NA intron (NM_033225, intron 12 of 69) THE1D|LTR|ERVL-MaLR -698424 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 149.667-52 chr3 105119902 105120193 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -246666 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 235.333-21 chr4 83535083 83535610 + 1 NA promoter-TSS (NM_001256422) promoter-TSS (NM_001256422) -568 NM_001256422 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 214.833-21 chr6 42593850 42594256 + 1 NA intron (NM_015255, intron 3 of 46) intron (NM_015255, intron 3 of 46) 30024 NM_001184801 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 128.333-42 chr15 86498355 86498558 + 1 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -181488 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 220.333-23 chr4 69817626 69817905 + 1 NA Intergenic Intergenic 42380 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 226.5-21 chr2 188505013 188505459 + 1 NA intron (NM_001252669, intron 4 of 8) L2|LINE|L2 207744 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 187.5-41 chr5 95054386 95054628 + 1 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) 27359 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 235.333-12 chr19 30234832 30235228 + 1 NA Intergenic Intergenic -137354 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 124.5-81 chr9 30678482 30678690 + 1 NA Intergenic Intergenic -270132 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 121.5-105 chr8 124509231 124509640 + 1 NA promoter-TSS (NR_106903) promoter-TSS (NR_106903) -859 NR_106903 102466200 NR_106903 ENSG00000284087 MIR6844 hsa-mir-6844 microRNA 6844 ncRNA 286.833-4 chr7 7269704 7270250 + 1 NA intron (NR_108073, intron 3 of 3) Charlie11|DNA|hAT-Charlie 14823 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 262.333-17 chr3 178358008 178358343 + 1 NA Intergenic L1MA7|LINE|L1 -61026 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 206.333-26 chr5 159283329 159283648 + 1 NA intron (NM_145049, intron 10 of 10) intron (NM_145049, intron 10 of 10) 20198 NM_145049 134510 Hs.591733 NM_145049 ENSG00000164332 UBLCP1 CPUB1 ubiquitin like domain containing CTD phosphatase 1 protein-coding 256.667-12 chr14 47428396 47428723 + 1 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -85313 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 207.667 chr1 29420182 29420672 + 1 NA Intergenic L1MA4A|LINE|L1 -70313 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 320.833-2 chr14 53822769 53823264 + 1 NA Intergenic L1MEd|LINE|L1 125468 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 218.5-32 chr8 77947811 77948346 + 1 NA Intergenic Intergenic 497381 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 166.667-69 chr9 119837706 119838053 + 1 NA Intergenic Intergenic -97181 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 269.333-17 chr8 17797129 17797425 + 1 NA intron (NM_001363058, intron 1 of 15) AluJb|SINE|Alu 3640 NM_001001924 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 197.333-9 chr12 32755922 32756238 + 1 NA promoter-TSS (NM_001040436) promoter-TSS (NM_001040436) -183 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 185.833-8 chr11 40451053 40451352 + 1 NA intron (NM_020929, intron 2 of 4) L1M4|LINE|L1 -158072 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 147.667-61 chr6 64041533 64041761 + 1 NA intron (NM_001292009, intron 33 of 43) intron (NM_001292009, intron 33 of 43) 234811 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 240.833-16 chr2 175675743 175676259 + 1 NA Intergenic Intergenic 326266 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 230.167-16 chr3 182246473 182246865 + 1 NA Intergenic Intergenic 239693 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 127.5-31 chr2 6179556 6179744 + 1 NA Intergenic L2c|LINE|L2 195772 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 307.167-3 chr5 131474210 131474622 + 1 NA intron (NM_016340, intron 16 of 27) AluSx|SINE|Alu 160813 NM_001164386 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 138.5-37 chr18 60104530 60104786 + 1 NA Intergenic Intergenic 204662 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 192.333-18 chr19 16435135 16435544 + 1 NA intron (NM_021235, intron 6 of 22) intron (NM_021235, intron 6 of 22) 36631 NM_001258374 58513 Hs.654639 NM_021235 ENSG00000127527 EPS15L1 EPS15R epidermal growth factor receptor pathway substrate 15 like 1 protein-coding 247.667-7 chr15 87674243 87674751 + 1 NA Intergenic Intergenic 97568 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 163.667-64 chr5 89976875 89977276 + 1 NA Intergenic L1ME4a|LINE|L1 39645 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 297.833-5 chr2 134138504 134139080 + 1 NA intron (NM_001371457, intron 1 of 16) MER94|DNA|hAT-Blackjack 11667 NR_037450 100500878 NR_037450 ENSG00000263813 MIR3679 mir-3679 microRNA 3679 ncRNA 167.667-8 chr1 192410218 192410526 + 1 NA Intergenic Intergenic 93380 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 156.333-16 chr11 60034574 60034806 + 1 NA Intergenic Intergenic -5719 NM_173801 219990 Hs.132310 NM_173801 ENSG00000149507 OOSP2 OOSP2A|PLAC1L|TMEM122 oocyte secreted protein 2 protein-coding 164.667-77 chr8 142899776 142899953 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL 17979 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 192.5-8 chr11 112117844 112118168 + 1 NA Intergenic AluSx1|SINE|Alu 31133 NM_001276506 6392 Hs.356270 NM_003002 ENSG00000204370 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex subunit D protein-coding 317.333-4 chr14 54070750 54071473 + 1 NA Intergenic L1MA1|LINE|L1 -114220 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 235.5-5 chr10 58576313 58576768 + 1 NA intron (NM_001080512, intron 1 of 20) intron (NM_001080512, intron 1 of 20) 63668 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 282.167-5 chr14 88271039 88271577 + 1 NA promoter-TSS (NM_138318) promoter-TSS (NM_138318) -397 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 123.833-64 chr7 140635120 140635342 + 1 NA intron (NM_001318053, intron 1 of 13) AluJb|SINE|Alu 5067 NM_001362678 27147 Hs.6385 NM_015689 ENSG00000146966 DENND2A FAM31D|KIAA1277 DENN domain containing 2A protein-coding 140.333-52 chr4 31762696 31762882 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -234590 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 228.5-38 chr8 112070082 112070431 + 1 NA Intergenic HAL1|LINE|L1 -573237 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 328.667-2 chr11 58718899 58719341 + 1 NA intron (NM_201648, intron 2 of 5) MER4-int|LTR|ERV1 12823 NM_201648 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 196.667-12 chr12 79319724 79320191 + 1 NA intron (NM_001291901, intron 7 of 9) intron (NM_001291901, intron 7 of 9) -99300 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 307.333-2 chr11 59442677 59443040 + 1 NA promoter-TSS (NM_001004728) promoter-TSS (NM_001004728) -311 NM_001004728 219982 Hs.553649 NM_001004728 ENSG00000172320 OR5A1 OR11-249|OR5A1P|OST181 olfactory receptor family 5 subfamily A member 1 protein-coding 129.667-84 chr5 122506914 122507404 + 1 NA Intergenic Intergenic -28072 NR_051996 153163 Hs.679757 NR_051996 ENSG00000250328 MGC32805 - uncharacterized LOC153163 ncRNA 247.667-26 chr8 137785551 137786091 + 1 NA Intergenic Intergenic 297724 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 298.333 chr10 118086601 118087147 + 1 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -39933 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 185.667-37 chr4 67676098 67676524 + 1 NA intron (NM_018227, intron 6 of 32) AluSp|SINE|Alu 24844 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 113.833-68 chr5 24319467 24319810 + 1 NA Intergenic Intergenic 325340 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 129.5-32 chr17 71952195 71952426 + 1 NA Intergenic Intergenic 73669 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 239.333-22 chr8 13367847 13368230 + 1 NA intron (NM_024767, intron 4 of 4) MamSINE1|SINE|tRNA-RTE -91254 NM_001348083 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 189.5-57 chr8 74212077 74212383 + 1 NA Intergenic Intergenic 109131 NM_001363050 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 159.333-62 chr5 3471265 3471672 + 1 NA intron (NR_033898, intron 2 of 4) L1ME1|LINE|L1 18652 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 191.667-39 chr3 175600636 175600965 + 1 NA intron (NM_207015, intron 10 of 13) AluY|SINE|Alu 175533 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 266.667-3 chr10 102502742 102503047 + 1 NA promoter-TSS (NM_005736) promoter-TSS (NM_005736) -182 NM_005736 10121 Hs.153961 NM_005736 ENSG00000138107 ACTR1A ARP1|Arp1A|CTRN1 actin related protein 1A protein-coding 254.5-17 chr7 80285840 80286239 + 1 NA Intergenic Intergenic 88400 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 236.833-20 chr8 120766908 120767383 + 1 NA intron (NR_125419, intron 2 of 4) intron (NR_125419, intron 2 of 4) 5892 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 215.5-10 chr13 112159241 112159585 + 1 NA intron (NR_134944, intron 1 of 1) MIRc|SINE|MIR 1297 NR_134944 100506016 Hs.371110 NR_134944 LOC100506016 - uncharacterized LOC100506016 ncRNA 158.667-67 chr5 9719047 9719262 + 1 NA intron (NR_027112, intron 5 of 12) L1MC4|LINE|L1 -88803 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 250.333-24 chr9 27792038 27792322 + 1 NA Intergenic Intergenic -218314 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 189.333-38 chr4 20172552 20172978 + 1 NA Intergenic LTR82B|LTR|ERVL -79140 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 264.667-25 chr8 61460135 61460546 + 1 NA intron (NM_173519, intron 5 of 5) HSMAR2|DNA|TcMar-Mariner 172370 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 141.333-80 chr5 167539017 167539271 + 1 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -34515 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 193.167-15 chr12 75475032 75475289 + 1 NA Intergenic Intergenic -5595 NM_006851 11010 Hs.205558 NM_006851 ENSG00000139278 GLIPR1 CRISP7|GLIPR|RTVP1 GLI pathogenesis related 1 protein-coding 169.333-20 chr13 52401688 52402112 + 1 NA intron (NM_018676, intron 2 of 4) intron (NM_018676, intron 2 of 4) 4272 NM_018676 55901 Hs.325667 NM_018676 ENSG00000136114 THSD1 TMTSP|UNQ3010 thrombospondin type 1 domain containing 1 protein-coding 129.833-56 chr5 40572700 40573173 + 1 NA Intergenic Intergenic -106979 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 227.5-23 chr4 58452534 58452792 + 1 NA Intergenic Intergenic 83665 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 133.5-15 chr11 11059194 11059357 + 1 NA Intergenic L1MEd|LINE|L1 201058 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 162.333-62 chr6 39466209 39466514 + 1 NA intron (NM_001289021, intron 12 of 21) L1M4b|LINE|L1 -34971 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 261.667-25 chr3 5667352 5667695 + 1 NA Intergenic L1PA13|LINE|L1 -417268 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 343.333-4 chr8 47804222 47805035 + 1 NA intron (NM_001081640, intron 69 of 84) L1MB7|LINE|L1 -66464 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT enhancer binding protein delta protein-coding 229.667-2 chr10 25271425 25271803 + 1 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -95338 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 214.5-11 chr16 3294187 3294471 + 1 NA Intergenic Intergenic 10838 NM_005741 10127 Hs.611475 NM_005741 ENSG00000006194 ZNF263 FPM315|ZKSCAN12|ZSCAN44 zinc finger protein 263 protein-coding 212.667-40 chr6 66530177 66530584 + 1 NA Intergenic L1MEf|LINE|L1 742501 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 263.5-10 chr18 53825297 53825697 + 1 NA Intergenic L1PA14|LINE|L1 -244438 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 233.667-31 chrX 55724515 55724821 + 1 NA intron (NM_006064, intron 3 of 9) intron (NM_006064, intron 3 of 9) 6919 NR_148690 10325 Hs.50282 NM_006064 ENSG00000083750 RRAGB RAGB|bA465E19.1 Ras related GTP binding B protein-coding 222.333-33 chr7 128434354 128434733 + 1 NA Intergenic AluJr|SINE|Alu -21287 NM_001098786 29923 Hs.706124 NM_013332 ENSG00000135245 HILPDA C7orf68|HIG-2|HIG2 hypoxia inducible lipid droplet associated protein-coding 163.333-70 chr6 84600326 84600510 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -89040 NR_125876 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 119.833-97 chrX 95063832 95064100 + 1 NA promoter-TSS (NR_031667) promoter-TSS (NR_031667) -740 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 340.667-3 chr17 61206023 61206428 + 1 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 161479 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 131.5-69 chr6 20070625 20070866 + 1 NA Intergenic Intergenic 141724 NM_001080480 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 126.333-105 chr7 143993150 143993298 + 1 NA Intergenic L1MEf|LINE|L1 -10773 NM_001005281 135946 Hs.632031 NM_001005281 ENSG00000221813 OR6B1 OR7-3|OR7-9 olfactory receptor family 6 subfamily B member 1 protein-coding 312.167-9 chr7 49128225 49128752 + 1 NA Intergenic Intergenic 203941 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 188.833-27 chr4 74188243 74188682 + 1 NA intron (NM_001351314, intron 5 of 9) MLT1A|LTR|ERVL-MaLR 30344 NM_001351314 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 220.667-41 chr8 40523200 40523443 + 1 NA Intergenic Intergenic -179958 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 119.667-101 chr8 123885771 123885976 + 1 NA intron (NM_001039112, intron 1 of 40) L2c|LINE|L2 33886 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 175.167-13 chr11 83614815 83615178 + 1 NA intron (NM_001142699, intron 19 of 27) intron (NM_001142699, intron 19 of 27) 67429 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 133.5-41 chr3 112602208 112602423 + 1 NA promoter-TSS (NR_109779) promoter-TSS (NR_109779) -346 NR_109779 100506621 Hs.86538 NR_109779 LINC01279 - long intergenic non-protein coding RNA 1279 ncRNA 221.667-37 chr8 49463514 49463953 + 1 NA Intergenic Intergenic 48447 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 246.333-16 chr22 17683787 17684131 + 1 NA intron (NM_001270735, intron 3 of 3) AluJb|SINE|Alu -22699 NM_001270733 23786 Hs.631672 NM_015367 ENSG00000099968 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2 like 13 protein-coding 195.833-4 chr10 64602642 64602953 + 1 NA Intergenic Intergenic -222731 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 168.833-28 chr20 11385534 11386041 + 1 NA Intergenic L1M5|LINE|L1 -112404 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 319.833-4 chr2 174982722 174983092 + 1 NA intron (NR_038133, intron 1 of 11) intron (NR_038133, intron 1 of 11) 22346 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 174.333-14 chr12 68436984 68437173 + 1 NA intron (NR_120458, intron 2 of 3) intron (NR_120458, intron 2 of 3) 14406 NR_120458 100507195 Hs.450772 NR_120458 ENSG00000251301 LINC02384 - long intergenic non-protein coding RNA 2384 ncRNA 349.167 chr1 89553308 89554009 + 1 NA intron (NM_001134476, intron 3 of 7) intron (NM_001134476, intron 3 of 7) 28820 NM_001369817 23507 Hs.482017 NM_015350 ENSG00000197147 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 VRAC subunit B protein-coding 193.5-53 chr7 121661256 121661602 + 1 NA Intergenic L1MC1|LINE|L1 -211732 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 136.333-84 chr6 87837342 87837617 + 1 NA intron (NR_110869, intron 2 of 4) L1MC2|LINE|L1 52619 NR_110869 101928911 Hs.571178 NR_110869 LOC101928911 - uncharacterized LOC101928911 ncRNA 241.5-20 chr4 172777582 172778135 + 1 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) -50980 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 188.333-22 chr17 44867762 44868068 + 1 NA intron (NM_001142605, intron 11 of 26) intron (NM_001142605, intron 11 of 26) 20032 NR_073504 51751 Hs.151787 NM_016438 ENSG00000131097 HIGD1B CLST11240|CLST11240-15 HIG1 hypoxia inducible domain family member 1B protein-coding 157.5-60 chr6 69635232 69635447 + 1 NA Intergenic Intergenic 161127 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 191.167-20 chr5 31291184 31291398 + 1 NA intron (NM_001362435, intron 2 of 10) intron (NM_001362435, intron 2 of 10) 97605 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 179.333-32 chr2 174560377 174560712 + 1 NA 3' UTR (NM_003387, exon 8 of 8) 3' UTR (NM_003387, exon 8 of 8) -2472 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 132.167-48 chr3 109686777 109687039 + 1 NA Intergenic Intergenic 84080 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 249.333-21 chr5 93368980 93369276 + 1 NA Intergenic L1ME2|LINE|L1 202215 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 216.333-32 chr4 78500374 78500678 + 1 NA intron (NM_025074, intron 61 of 73) intron (NM_025074, intron 61 of 73) -51244 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 121.5-56 chr2 144016576 144016796 + 1 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 79619 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 164.333-32 chr2 164477520 164477825 + 1 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat 90823 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 174.667-43 chr3 160202925 160203216 + 1 NA intron (NR_108088, intron 1 of 9) intron (NR_108088, intron 1 of 9) 4022 NR_108088 101928376 Hs.565865 NR_108088 ENSG00000244040 IL12A-AS1 ILAS1-AS1 IL12A antisense RNA 1 ncRNA 187.5-10 chr12 20992663 20992989 + 1 NA intron (NM_001371097, intron 13 of 15) L1M5|LINE|L1 -22870 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 309.833-2 chr17 58176666 58177165 + 1 NA Intergenic Intergenic 7259 NM_001004707 124538 Hs.446879 NM_001004707 ENSG00000255713 OR4D2 BC2009|OR17-24 olfactory receptor family 4 subfamily D member 2 protein-coding 167.5-65 chr9 92788635 92788900 + 1 NA Intergenic (AAAAT)n|Simple_repeat|Simple_repeat 19320 NR_136301 101929748 Hs.551296 NR_136301 LOC101929748 - uncharacterized LOC101929748 ncRNA 217.333-12 chr14 85879203 85879591 + 1 NA Intergenic Intergenic -55281 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 312.833-5 chr4 31089507 31089883 + 1 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -81449 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 123.333 chr1 30220306 30220471 + 1 NA Intergenic L2a|LINE|L2 -182776 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 176.667-4 chr1 80105220 80105573 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -430359 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 232.333-17 chr2 116807401 116807733 + 1 NA Intergenic Intergenic -1007124 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 153.667-72 chr7 40096876 40097155 + 1 NA 3' UTR (NM_031267, exon 14 of 14) 3' UTR (NM_031267, exon 14 of 14) 37607 NM_138701 136647 Hs.654989 NM_138701 ENSG00000168303 MPLKIP ABHS|C7orf11|ORF20|TTD4 M-phase specific PLK1 interacting protein protein-coding 196.333-35 chr4 113805472 113806042 + 1 NA Intergenic L1ME3|LINE|L1 -43830 NM_172127 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 176.5-44 chr3 87201884 87202123 + 1 NA Intergenic Intergenic 24274 NR_039958 100616161 NR_039958 ENSG00000264119 MIR4795 - microRNA 4795 ncRNA 167.833-17 chr14 55787547 55787928 + 1 NA intron (NR_026796, intron 3 of 3) MLT1C|LTR|ERVL-MaLR 8937 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 152.667-81 chr8 8629252 8629432 + 1 NA Intergenic Intergenic -72595 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 486.167 chr13 58920841 58921647 + 1 NA Intergenic Intergenic -688127 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 122.333-78 chr4 32378435 32378686 + 1 NA Intergenic L1ME1|LINE|L1 27522 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 140.333-16 chr12 10510648 10510944 + 1 NA intron (NM_001357731, intron 1 of 1) intron (NM_001357731, intron 1 of 1) 4903 NM_001357731 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 273.333-8 chr16 85357286 85357626 + 1 NA Intergenic Intergenic -51131 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 180.667-63 chr6 55444933 55445373 + 1 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 117684 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 171.167-25 chr2 119894463 119894954 + 1 NA intron (NM_002830, intron 9 of 26) intron (NM_002830, intron 9 of 26) -118369 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 224.167-9 chr16 8334998 8335302 + 1 NA Intergenic L1ME5|LINE|L1 254688 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 234.167-12 chr20 15632331 15632635 + 1 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 290831 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 149.333-65 chr3 166172276 166172573 + 1 NA Intergenic (TTAT)n|Simple_repeat|Simple_repeat -335001 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 209.667-29 chr5 27435297 27435662 + 1 NA Intergenic Intergenic -36813 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 266.667-4 chr11 6764853 6765320 + 1 NA Intergenic L1MA8|LINE|L1 3871 NM_001004490 338755 Hs.534614 NM_001004490 ENSG00000188124 OR2AG2 OR11-76|OR2AG2P olfactory receptor family 2 subfamily AG member 2 protein-coding 171.333-49 chr4 57203972 57204189 + 1 NA intron (NR_034081, intron 3 of 4) intron (NR_034081, intron 3 of 4) -93695 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 245.5-10 chr20 18591736 18592264 + 1 NA intron (NM_080820, intron 1 of 5) Charlie7|DNA|hAT-Charlie 3946 NM_080820 92675 Hs.659442 NM_080820 ENSG00000125821 DTD1 C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68 D-aminoacyl-tRNA deacylase 1 protein-coding 277.5-14 chr5 154071003 154071477 + 1 NA Intergenic L2a|LINE|L2 32273 NM_005927 4238 Hs.432818 NM_005927 ENSG00000037749 MFAP3 - microfibril associated protein 3 protein-coding 274.333-7 chr17 41167012 41167421 + 1 NA TTS (NM_033187) TTS (NM_033187) 527 NM_001277332 100505724 NM_001277332 ENSG00000180386 KRTAP9-7 KAP9.7|KRTAP9L1 keratin associated protein 9-7 protein-coding 169.667-17 chr12 31413909 31414257 + 1 NA intron (NM_144973, intron 12 of 20) intron (NM_144973, intron 12 of 20) -44782 NR_146469 101929027 Hs.266041 NR_146469 ENSG00000256232 LINC02387 - long intergenic non-protein coding RNA 2387 ncRNA 151.333-95 chr9 32179730 32180023 + 1 NA Intergenic Intergenic -204727 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 134.5-53 chr3 64618813 64618947 + 1 NA intron (NM_001318781, intron 18 of 38) intron (NM_001318781, intron 18 of 38) 57534 NR_110150 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 221.5-31 chr6 54540322 54540667 + 1 NA Intergenic MIRb|SINE|MIR 232053 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 217.667-5 chr10 95131750 95132256 + 1 NA Intergenic L1PA5|LINE|L1 -62197 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 262.833-11 chr8 2843982 2844613 + 1 NA Intergenic Intergenic -115846 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 169.167-33 chr4 36746460 36746715 + 1 NA Intergenic L1MC|LINE|L1 -104687 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 156.5-79 chr7 87986802 87987010 + 1 NA intron (NM_001324421, intron 3 of 28) intron (NM_001324421, intron 3 of 28) 52655 NM_001324420 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 216.667-21 chr2 21845150 21845597 + 1 NA Intergenic Intergenic -134721 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 147.667-48 chr3 191675585 191675762 + 1 NA Intergenic L1ME1|LINE|L1 214510 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 234.667-16 chr16 80030427 80030889 + 1 NA Intergenic Intergenic 235409 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 238.5-28 chr5 112006217 112006657 + 1 NA intron (NR_046678, intron 3 of 3) intron (NR_046678, intron 3 of 3) -29505 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 277.667-7 chr2 224552786 224553169 + 1 NA intron (NM_001257197, intron 1 of 14) intron (NM_001257197, intron 1 of 14) 16978 NM_001257198 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 231.167-4 chr10 66863357 66863844 + 1 NA intron (NM_001127384, intron 7 of 17) L2a|LINE|L2 -62436 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 180.333-51 chr6 51037596 51037916 + 1 NA Intergenic MIRb|SINE|MIR 218885 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 264.667 chr1 162985822 162986209 + 1 NA Intergenic Intergenic -82591 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 276.667-6 chr7 53376321 53376830 + 1 NA Intergenic Intergenic 340942 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 230.167-3 chr12 16402806 16403255 + 1 NA Intergenic Intergenic 49613 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 251.333-8 chr14 74118375 74118829 + 1 NA intron (NM_001024674, intron 5 of 5) AluJb|SINE|Alu 33649 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 209.5-27 chr3 99986029 99986355 + 1 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) -21794 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 207.5-14 chr16 61670654 61671021 + 1 NA intron (NM_001796, intron 10 of 11) MER44D|DNA|TcMar-Tigger 365601 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 197.833-21 chr3 39141506 39142051 + 1 NA TTS (NM_001320560) TTS (NM_001320560) 3572 NR_106880 102466743 NR_106880 ENSG00000284158 MIR6822 hsa-mir-6822 microRNA 6822 ncRNA 157.167-8 chr1 194382461 194382681 + 1 NA Intergenic Charlie17|DNA|hAT-Charlie 1077826 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 132.667-40 chr16 59317969 59318169 + 1 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 437122 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 158.667-10 chr10 68998085 68998336 + 1 NA intron (NM_015634, intron 1 of 6) AluSx3|SINE|Alu 9407 NM_015634 26128 Hs.279580 NM_015634 ENSG00000198954 KIF1BP KBP|KIAA1279|TTC20 KIF1 binding protein protein-coding 133.5-32 chr2 16040028 16040236 + 1 NA Intergenic Intergenic -10295 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 277.333-3 chr13 69886591 69886930 + 1 NA intron (NM_001286725, intron 3 of 9) intron (NM_001286725, intron 3 of 9) -220453 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 172.333-60 chr4 129554745 129554940 + 1 NA Intergenic Intergenic 216636 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 154.333-43 chr2 230534467 230534631 + 1 NA intron (NM_001080391, intron 24 of 28) LOR1-int|LTR|ERV1 117793 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 184.5-24 chr2 23522084 23522288 + 1 NA intron (NM_052920, intron 2 of 13) AluSz|SINE|Alu 137007 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 186.333-13 chr11 68070446 68070842 + 1 NA intron (NM_001277, intron 5 of 11) intron (NM_001277, intron 5 of 11) 25850 NR_106811 102465451 NR_106811 ENSG00000275022 MIR6753 hsa-mir-6753 microRNA 6753 ncRNA 196.333-48 chr6 100067286 100067680 + 1 NA intron (NR_038384, intron 2 of 2) L1M3b|LINE|L1 -73245 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 156.167-56 chr7 41510702 41511002 + 1 NA Intergenic Intergenic -183067 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 232.167-20 chr4 85415097 85415533 + 1 NA Intergenic Tigger5|DNA|TcMar-Tigger -59835 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 266.333-6 chr18 6894271 6894860 + 1 NA intron (NM_001010000, intron 13 of 16) L1ME4b|LINE|L1 35304 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 133.667-65 chr3 197756448 197756613 + 1 NA exon (NM_032288, exon 2 of 9) exon (NM_032288, exon 2 of 9) 6283 NR_027840 84248 Hs.277533 NM_032288 ENSG00000122068 FYTTD1 UIF forty-two-three domain containing 1 protein-coding 266.333-5 chr15 86544462 86545034 + 1 NA intron (NM_152336, intron 19 of 24) THE1B|LTR|ERVL-MaLR -227780 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 171.667-72 chr6 104274516 104274814 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 584881 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 126.333-23 chr12 66461317 66461529 + 1 NA intron (NM_001366722, intron 9 of 24) intron (NM_001366722, intron 9 of 24) 158878 NR_135080 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 196.5-19 chr19 817370 817632 + 1 NA intron (NM_001270366, intron 2 of 7) AluSz|SINE|Alu 3917 NR_036154 100422854 NR_036154 ENSG00000263414 MIR3187 mir-3187 microRNA 3187 ncRNA 128.5-15 chr11 94899179 94899368 + 1 NA Intergenic L1MB8|LINE|L1 74283 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 176.667-74 chr8 28549409 28549604 + 1 NA intron (NM_017412, intron 5 of 7) L1M5|LINE|L1 -44324 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 275.5-16 chrX 94868523 94869037 + 1 NA Intergenic L1MA3|LINE|L1 194446 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 186.667-12 chr12 11767331 11767770 + 1 NA intron (NM_001987, intron 2 of 7) MIRc|SINE|MIR 117696 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 201.667-18 chr2 100444401 100444677 + 1 NA Intergenic L1MDa|LINE|L1 -25943 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 184.833-9 chr14 64528854 64529317 + 1 NA intron (NM_014950, intron 2 of 2) intron (NM_014950, intron 2 of 2) 11283 NR_110550 102723809 Hs.667192 NR_110550 ENSG00000259116 LOC102723809 - uncharacterized LOC102723809 ncRNA 267.833-13 chr7 7253230 7253633 + 1 NA Intergenic Intergenic -1723 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 149.667-49 chr3 63777071 63777319 + 1 NA Intergenic MSTB|LTR|ERVL-MaLR -42104 NM_001355236 132200 Hs.506386 NM_001355236 ENSG00000163632 C3orf49 - chromosome 3 open reading frame 49 protein-coding 194.5-35 chr5 115491473 115491849 + 1 NA Intergenic Intergenic 53114 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 133.667-38 chr16 49500027 49500185 + 1 NA intron (NM_001271620, intron 7 of 7) intron (NM_001271620, intron 7 of 7) 18479 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 141.667-29 chr14 79471524 79471828 + 1 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 192296 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 353.833-2 chr8 115835034 115835719 + 1 NA Intergenic L2c|LINE|L2 -166401 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 169.5-73 chr8 100947205 100947649 + 1 NA intron (NM_001135700, intron 2 of 5) intron (NM_001135700, intron 2 of 5) 3144 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 187.667-12 chr12 76898504 76898852 + 1 NA Intergenic Intergenic -19659 NM_001321 1466 Hs.530904 NM_001321 ENSG00000175183 CSRP2 CRP2|LMO5|SmLIM cysteine and glycine rich protein 2 protein-coding 139.5-72 chr8 32623680 32623826 + 1 NA intron (NM_013960, intron 5 of 12) intron (NM_013960, intron 5 of 12) -22979 NM_013959 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 184.333-10 chr13 108466390 108466622 + 1 NA Intergenic LTR85a|LTR|Gypsy? -129399 NM_015011 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 143.333-25 chr16 74008419 74008667 + 1 NA Intergenic L1M5|LINE|L1 206978 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 405.5-6 chr3 172243893 172244530 + 1 NA intron (NM_001135095, intron 4 of 25) intron (NM_001135095, intron 4 of 25) 203680 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 294.333-12 chr4 60126509 60127048 + 1 NA Intergenic AluSx3|SINE|Alu -795841 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 196.333-46 chr6 81046039 81046373 + 1 NA Intergenic Intergenic 706475 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 230.5-24 chr8 28286040 28286387 + 1 NA Intergenic AluJb|SINE|Alu -31055 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 163.5-62 chr5 110584549 110584744 + 1 NA intron (NM_001039763, intron 10 of 13) intron (NM_001039763, intron 10 of 13) -70731 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 262.333-26 chr5 139265350 139265875 + 1 NA Intergenic AluSx1|SINE|Alu -8140 NM_001194954 9782 Hs.268939 NM_018834 ENSG00000015479 MATR3 ALS21|MPD2|VCPDM matrin 3 protein-coding 211.667 chr1 23653897 23654384 + 1 NA Intergenic L2c|LINE|L2 26806 NM_001348075 259283 Hs.523369 NM_001348075 MDS2 - myelodysplastic syndrome 2 translocation associated protein-coding 321.833-4 chr18 4077792 4078589 + 1 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 115837 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 229.5-2 chr1 111765630 111765913 + 1 NA exon (NM_007204, exon 11 of 11) exon (NM_007204, exon 11 of 11) 9870 NM_007204 11218 Hs.591405 NM_007204 ENSG00000064703 DDX20 DP103|GEMIN3 DEAD-box helicase 20 protein-coding 195.167-24 chr3 163764574 163764919 + 1 NA Intergenic Intergenic 406810 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 241.167-13 chr8 59068200 59068794 + 1 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 50650 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 391.5-2 chr11 36511891 36512845 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR -2096 NM_004620 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 209.333-37 chr4 172425002 172425449 + 1 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 263692 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 207.5-6 chr11 76263002 76263386 + 1 NA Intergenic HERVL74-int|LTR|ERVL -56692 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 293.5-10 chr5 100509770 100510289 + 1 NA Intergenic L1MD|LINE|L1 -25345 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 202.833-19 chr4 36391938 36392248 + 1 NA Intergenic MIRb|SINE|MIR 34335 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 205.5-25 chr20 45024854 45025133 + 1 NA exon (NM_006282, exon 10 of 11) exon (NM_006282, exon 10 of 11) 58481 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 293.333-3 chr13 92028022 92028648 + 1 NA intron (NM_004466, intron 6 of 7) intron (NM_004466, intron 6 of 7) 323872 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 124.5-18 chr12 61487368 61487557 + 1 NA Intergenic Intergenic 705377 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 138.5-36 chr18 24425199 24425386 + 1 NA Intergenic Intergenic -1378 NM_018439 55364 Hs.515317 NM_018439 ENSG00000154059 IMPACT RWDD5 impact RWD domain protein protein-coding 119.667-9 chr10 85948025 85948162 + 1 NA intron (NM_017551, intron 4 of 15) L1MD3|LINE|L1 316695 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 259.667-10 chr16 82781748 82782411 + 1 NA intron (NR_110938, intron 1 of 2) intron (NR_110938, intron 1 of 2) 8760 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 165.667-50 chr4 86921432 86921639 + 1 NA Intergenic Intergenic 13315 NR_038841 100506746 Hs.657766 NR_038841 AFF1-AS1 - AFF1 antisense RNA 1 ncRNA 129.333-2 chr1 82905520 82905797 + 1 NA intron (NR_147074, intron 1 of 10) intron (NR_147074, intron 1 of 10) 2475 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 197.333-50 chr6 45510784 45511140 + 1 NA intron (NM_001015051, intron 6 of 7) MIR|SINE|MIR 88687 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 198.167-16 chr18 66165339 66165838 + 1 NA Intergenic L1MDa|LINE|L1 414576 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 118.5-19 chr11 79186955 79187190 + 1 NA intron (NM_001098816, intron 3 of 33) intron (NM_001098816, intron 3 of 33) 215037 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 233.667-7 chr13 51275230 51275496 + 1 NA intron (NM_001242312, intron 3 of 3) AluJr|SINE|Alu 52965 NM_001242312 220108 Hs.71913 NM_145019 ENSG00000150510 FAM124A - family with sequence similarity 124 member A protein-coding 124.333-41 chr19 31836726 31836894 + 1 NA Intergenic Intergenic -189052 NR_110674 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 154.667-27 chr14 88068172 88068558 + 1 NA intron (NR_046094, intron 2 of 3) intron (NR_046094, intron 2 of 3) -42053 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 130.167-62 chr5 164043103 164043311 + 1 NA Intergenic Intergenic 424195 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 151.333-23 chr12 113495495 113495807 + 1 NA Intergenic L1MB4|LINE|L1 23648 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 131.833-71 chr8 131423107 131423483 + 1 NA Intergenic MER47A|DNA|TcMar-Tigger -382386 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 166.667-32 chr22 31819512 31819771 + 1 NA intron (NM_001242897, intron 22 of 39) AluJb|SINE|Alu 65618 NM_001369903 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 217.333-19 chr2 216503063 216503410 + 1 NA 3' UTR (NM_000998, exon 4 of 4) 3' UTR (NM_000998, exon 4 of 4) 4392 NM_000998 6168 Hs.433701 NM_000998 ENSG00000197756 RPL37A L37A ribosomal protein L37a protein-coding 183.333-64 chr9 27658278 27658704 + 1 NA Intergenic Intergenic -84625 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 232.833-6 chr14 62530972 62531223 + 1 NA Intergenic Intergenic -391124 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 188.833 chr1 50536527 50536866 + 1 NA intron (NM_007051, intron 14 of 18) MIRc|SINE|MIR -113253 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 217.333-16 chr2 65655041 65655415 + 1 NA Intergenic Intergenic -222629 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 203.5-25 chr22 28443813 28444115 + 1 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -15905 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 182.833-23 chr18 74031143 74031350 + 1 NA Intergenic L1M4a2|LINE|L1 116588 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 186.667-70 chr5 69028417 69028705 + 1 NA intron (NR_130778, intron 1 of 3) intron (NR_130778, intron 1 of 3) 1366 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 169.333-69 chr8 84395762 84396042 + 1 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -19582 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 136.333-51 chr2 217321094 217321336 + 1 NA intron (NR_026597, intron 10 of 12) L1ME3F|LINE|L1 38482 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 150.667-25 chr13 60467208 60467463 + 1 NA exon (NM_001146070, exon 5 of 14) exon (NM_001146070, exon 5 of 14) 70115 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 227.333-42 chr7 90496386 90496643 + 1 NA intron (NM_001365443, intron 6 of 6) L1M2|LINE|L1 26875 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 207.167-15 chr17 61481210 61481553 + 1 NA intron (NM_018488, intron 7 of 7) MER58B|DNA|hAT-Charlie 24893 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 211.333-52 chrX 71428655 71428955 + 1 NA intron (NR_104387, intron 32 of 39) L1ME4a|LINE|L1 62448 NR_104387 6872 Hs.158560 NM_004606 ENSG00000147133 TAF1 BA2R|CCG1|CCGS|DYT3|DYT3/TAF1|KAT4|MRXS33|N-TAF1|NSCL2|OF|P250|TAF(II)250|TAF2A|TAFII-250|TAFII250|XDP TATA-box binding protein associated factor 1 protein-coding 243.5-25 chr6 2621309 2621700 + 1 NA TTS (NR_131168) TTS (NR_131168) -12996 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 378.834-3 chr6 37532947 37533944 + 1 NA intron (NR_126057, intron 1 of 3) MIR3|SINE|MIR 21977 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 159.667-100 chrX 76976679 76976984 + 1 NA intron (NR_110403, intron 1 of 3) MIRc|SINE|MIR 28670 NR_029905 442899 NR_029905 ENSG00000207995 MIR325 MIRN325|hsa-mir-325 microRNA 325 ncRNA 343.5-11 chr9 25945293 25945725 + 1 NA Intergenic L1MA1|LINE|L1 -121166 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 171.5-45 chr3 192329029 192329337 + 1 NA intron (NM_004113, intron 4 of 5) L2c|LINE|L2 79866 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 255.833-10 chr20 41586657 41587126 + 1 NA intron (NM_032221, intron 1 of 36) L1MEf|LINE|L1 31486 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 135.667-88 chr5 90729387 90729560 + 1 NA intron (NR_003149, intron 49 of 89) intron (NR_003149, intron 49 of 89) 170676 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 205.333-30 chr2 219973384 219973668 + 1 NA Intergenic L1M6|LINE|L1 -66961 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 183.333-65 chr9 27796485 27796710 + 1 NA Intergenic Intergenic -222731 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 275.333-16 chr2 167495407 167496059 + 1 NA Intergenic Intergenic 308361 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 208.333-25 chr21 23024795 23025147 + 1 NA Intergenic Intergenic -54313 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 121.667-59 chr22 24082421 24082547 + 1 NA intron (NM_012295, intron 19 of 36) L1ME3Cz|LINE|L1 71114 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 216.333-5 chr1 240282354 240282810 + 1 NA intron (NM_020066, intron 7 of 17) intron (NM_020066, intron 7 of 17) 190699 NM_001348094 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 120.833-29 chr2 67463505 67463704 + 1 NA Intergenic Intergenic 66271 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 195.167-12 chr16 79686240 79686650 + 1 NA Intergenic MIRc|SINE|MIR -84026 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 134.833-31 chr2 213697758 213697959 + 1 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -60209 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 146.667-36 chr14 77514961 77515121 + 1 NA intron (NM_004863, intron 11 of 11) L1MB7|LINE|L1 -16225 NM_182509 145501 Hs.29742 NM_182509 ENSG00000100593 ISM2 TAIL1|THSD3 isthmin 2 protein-coding 123.667-90 chr5 116649280 116649712 + 1 NA Intergenic Intergenic -74673 NM_001300780 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 235.333-16 chr3 96455526 96455970 + 1 NA Intergenic Intergenic 95784 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 420.5-2 chr3 167969955 167970444 + 1 NA Intergenic L1MA3|LINE|L1 74251 NR_145443 646168 Hs.390443 NR_033843 ENSG00000244227 LRRC77P LINC01330 leucine rich repeat containing 77, pseudogene pseudo 274.333-6 chr15 85470682 85471088 + 1 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 90282 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 167.667-55 chr22 45369747 45369982 + 1 NA intron (NM_148674, intron 15 of 24) intron (NM_148674, intron 15 of 24) 43735 NM_148674 27127 Hs.334176 NM_148674 ENSG00000077935 SMC1B SMC1BETA|SMC1L2 structural maintenance of chromosomes 1B protein-coding 176.5-12 chr11 80793956 80794152 + 1 NA Intergenic Intergenic -31251 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 169.5-43 chr3 17260486 17260821 + 1 NA intron (NM_014744, intron 15 of 21) intron (NM_014744, intron 15 of 21) 327457 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 170.667-40 chr3 89293976 89294240 + 1 NA intron (NM_182644, intron 3 of 6) MER58B|DNA|hAT-Charlie 186487 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 237.333-16 chr2 54221357 54221605 + 1 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 34748 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 217.5-41 chr6 21253810 21254230 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity 257872 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 194.167-3 chr10 12591673 12592017 + 1 NA intron (NM_001351032, intron 4 of 11) AluSx3|SINE|Alu 13092 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 184.167-13 chr10 127220559 127220819 + 1 NA intron (NM_001290223, intron 27 of 51) intron (NM_001290223, intron 27 of 51) -24098 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 172.333-5 chr1 200868336 200868798 + 1 NA Intergenic L1ME4c|LINE|L1 -4414 NM_005298 2848 Hs.534316 NM_005298 ENSG00000170128 GPR25 - G protein-coupled receptor 25 protein-coding 164.167-37 chr2 157203859 157204108 + 1 NA Intergenic Intergenic -53722 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 207.333-6 chr1 226190107 226190381 + 1 NA Intergenic AluSx1|SINE|Alu -3503 NM_022735 64746 Hs.520207 NM_022735 ENSG00000182827 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 273.333-22 chr6 127431960 127432369 + 1 NA Intergenic Intergenic 27225 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 262.167-3 chr11 63925126 63925436 + 1 NA Intergenic Intergenic -8117 NM_001363648 283248 Hs.98788 NM_173587 ENSG00000167771 RCOR2 - REST corepressor 2 protein-coding 218.167-13 chr2 60890451 60890932 + 1 NA intron (NM_002908, intron 1 of 10) L1ME1|LINE|L1 9117 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 142.333-102 chr9 29545642 29545811 + 1 NA Intergenic L1PA16|LINE|L1 -332125 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 166.5-32 chr2 134341763 134341981 + 1 NA intron (NM_001371457, intron 8 of 16) intron (NM_001371457, intron 8 of 16) 87800 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 182.5-41 chr8 89207846 89208105 + 1 NA Intergenic MLT2B2|LTR|ERVL 549736 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 273.333-10 chr18 67623064 67623534 + 1 NA intron (NR_033921, intron 1 of 4) Tigger15a|DNA|TcMar-Tigger -106579 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 253.333 chr1 93354349 93354675 + 1 NA intron (NM_001938, intron 2 of 2) intron (NM_001938, intron 2 of 2) 8605 NM_001938 1810 Hs.348418 NM_001938 ENSG00000117505 DR1 NC2|NC2-BETA|NC2B|NCB2 down-regulator of transcription 1 protein-coding 216.5-30 chr7 82455500 82455905 + 1 NA Intergenic Intergenic -11746 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 188.667-22 chr17 57805784 57806061 + 1 NA Intergenic Intergenic 44122 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 183.667-35 chr19 28643435 28643818 + 1 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 36938 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 171.5-39 chr2 188884133 188884428 + 1 NA Intergenic Intergenic -90093 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 245.667-6 chr12 22636667 22637018 + 1 NA intron (NM_001039481, intron 1 of 2) MER2|DNA|TcMar-Tigger 11671 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 185.333-12 chr12 31859263 31859608 + 1 NA Intergenic L1MC4a|LINE|L1 27768 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 116.333-68 chr4 61263162 61263431 + 1 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 61124 NM_001371342 255.5-4 chr10 69149200 69149521 + 1 NA intron (NM_001318944, intron 3 of 9) L1MC4|LINE|L1 25182 NM_001318945 9559 Hs.499925 NM_004896 ENSG00000122958 VPS26A HB58|Hbeta58|PEP8A|VPS26 VPS26, retromer complex component A protein-coding 131.667-51 chr2 13480123 13480357 + 1 NA Intergenic Intergenic -473227 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 190.5-7 chr11 20559813 20560196 + 1 NA Intergenic MLT1H2|LTR|ERVL-MaLR -39396 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 217.333-18 chr2 112467766 112468207 + 1 NA Intergenic L1MA4|LINE|L1 -14170 NM_153712 150465 Hs.358997 NM_153712 ENSG00000114999 TTL - tubulin tyrosine ligase protein-coding 225.5-21 chr15 95514125 95514372 + 1 NA Intergenic (AG)n|Simple_repeat|Simple_repeat 81155 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 245.667-4 chr11 78574301 78574758 + 1 NA 5' UTR (NM_024678, exon 1 of 14) 5' UTR (NM_024678, exon 1 of 14) 335 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 334.5-2 chr1 231401021 231401562 + 1 NA intron (NM_022051, intron 1 of 4) MIR|SINE|MIR 23753 NM_022051 54583 Hs.444450 NM_022051 ENSG00000135766 EGLN1 C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia inducible factor 1 protein-coding 254.667-2 chr10 55889921 55890354 + 1 NA Intergenic Intergenic -262195 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 158.333-52 chr3 99728870 99729244 + 1 NA intron (NM_001850, intron 2 of 4) intron (NM_001850, intron 2 of 4) -88805 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 262.333-21 chr4 72485198 72485657 + 1 NA intron (NM_014243, intron 3 of 21) intron (NM_014243, intron 3 of 21) 83794 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 198.333-25 chr20 15899521 15899889 + 1 NA intron (NR_130924, intron 1 of 1) intron (NR_130924, intron 1 of 1) 23609 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 307.5 chr1 105784925 105785509 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -166282 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 153.5-38 chr20 28831017 28831281 + 1 NA Intergenic ALR/Alpha|Satellite|centr -228484 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 291.5-3 chr12 50818522 50819193 + 1 NA intron (NM_005171, intron 6 of 6) AluSx|SINE|Alu -24069 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 218.667-47 chr9 23293710 23293951 + 1 NA Intergenic Intergenic 378569 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 245.333-8 chr14 100798212 100798919 + 1 NA Intergenic L1M5|LINE|L1 -15926 NR_039729 100616495 NR_039729 ENSG00000266461 MIR2392 - microRNA 2392 ncRNA 238.5-21 chr3 57736083 57736394 + 1 NA Intergenic L1MA7|LINE|L1 -21018 NM_007159 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 163.5-50 chr3 189213719 189214022 + 1 NA intron (NM_198485, intron 2 of 5) L1ME4b|LINE|L1 26724 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 267.333-11 chr16 22039460 22039963 + 1 NA intron (NM_001164579, intron 1 of 2) intron (NM_001164579, intron 1 of 2) 31600 NM_001164579 730094 Hs.498890 NM_173501 ENSG00000185716 MOSMO ATTHOG|BC030336|C16orf52 modulator of smoothened protein-coding 280.667-23 chr6 67431236 67431657 + 1 NA Intergenic Intergenic -623905 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 136.667-104 chr8 69787158 69787416 + 1 NA intron (NM_001146009, intron 1 of 7) intron (NM_001146009, intron 1 of 7) 45882 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 214.167-26 chr8 121683147 121683475 + 1 NA Intergenic L1MB8|LINE|L1 -41871 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 188.5 chr1 15352916 15353141 + 1 NA intron (NM_052929, intron 19 of 30) MIR|SINE|MIR -9145 NR_148919 101927417 Hs.715313 NR_148918 ENSG00000233485 LOC101927417 - uncharacterized LOC101927417 ncRNA 244.167-12 chr2 64499741 64500194 + 1 NA intron (NR_147011, intron 2 of 2) MSTA|LTR|ERVL-MaLR 13614 NR_147011 105374774 NR_147011 ENSG00000223863 LINC01805 - long intergenic non-protein coding RNA 1805 ncRNA 267.667-15 chr3 50971266 50971717 + 1 NA intron (NM_004947, intron 5 of 52) L1PA15-16|LINE|L1 296411 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 166.167-15 chr14 88828070 88828281 + 1 NA intron (NR_159362, intron 1 of 14) intron (NR_159362, intron 1 of 14) 3524 NM_001366535 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 246.5-25 chr8 105307454 105307783 + 1 NA Intergenic L1MEi|LINE|L1 -10820 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 306.833-6 chr9 96118158 96118641 + 1 NA Intergenic HAL1|LINE|L1 -1988 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 149.667-73 chr7 97202852 97203164 + 1 NA Intergenic Intergenic 86415 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 187.667-57 chr8 93336371 93336622 + 1 NA Intergenic MIRb|SINE|MIR -169646 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 340.333-9 chr20 58832261 58832764 + 1 NA intron (NR_002785, intron 4 of 4) L1M5|LINE|L1 -7236 NM_016592 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 151.5-73 chr9 29477537 29477716 + 1 NA Intergenic Intergenic -264025 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 172.5-46 chr4 128192289 128192511 + 1 NA intron (NR_146772, intron 14 of 19) MER47A|DNA|TcMar-Tigger 95413 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 117.667-20 chr10 89258171 89258320 + 1 NA Intergenic L1MB8|LINE|L1 -6206 NM_001288979 3988 Hs.643030 NM_000235 ENSG00000107798 LIPA CESD|LAL lipase A, lysosomal acid type protein-coding 134.333-101 chr8 102223126 102223390 + 1 NA intron (NM_001172477, intron 5 of 8) intron (NM_001172477, intron 5 of 8) 15573 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 127.833-56 chr5 7192843 7193204 + 1 NA Intergenic Intergenic 76331 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 162.167-33 chr3 114342115 114342315 + 1 NA intron (NR_121662, intron 6 of 6) intron (NR_121662, intron 6 of 6) -9596 NR_038993 100131117 Hs.122417 NR_038993 ENSG00000241560 ZBTB20-AS1 - ZBTB20 antisense RNA 1 ncRNA 143.5-52 chr22 35051551 35051763 + 1 NA Intergenic MER33|DNA|hAT-Charlie -14501 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 213.667-13 chr16 7493699 7493943 + 1 NA intron (NM_145893, intron 1 of 13) MLT1D|LTR|ERVL-MaLR 160976 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 164.5-7 chr10 82291808 82292071 + 1 NA intron (NM_001370082, intron 3 of 10) L1MD1|LINE|L1 -59019 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 181.667-13 chr14 43472804 43473124 + 1 NA Intergenic L1ME3A|LINE|L1 1034319 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 296.667-9 chr20 6411715 6412190 + 1 NA Intergenic Intergenic -14780 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 239.167-2 chr1 51457899 51458378 + 1 NA intron (NM_001981, intron 8 of 24) intron (NM_001981, intron 8 of 24) -36043 NM_001159969 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 165.5-56 chr7 61924060 61924495 + 1 NA Intergenic ALR/Alpha|Satellite|centr 1379779 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 291.667-12 chr14 43183642 43184105 + 1 NA Intergenic L1MB2|LINE|L1 1323410 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 297.333-2 chr1 208962532 208962892 + 1 NA Intergenic L1MA4|LINE|L1 -9742 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 280.667-29 chr9 73795030 73795455 + 1 NA Intergenic Intergenic -576289 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 295.5-8 chr6 157811030 157811604 + 1 NA Intergenic Intergenic -11929 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 153.667-27 chr15 67935232 67935576 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -95359 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 138.167-78 chr9 31280051 31280269 + 1 NA Intergenic Intergenic 101330 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 323.333-11 chr6 53439564 53440034 + 1 NA Intergenic Intergenic -90620 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 125.5-8 chr10 85932880 85933063 + 1 NA intron (NM_017551, intron 4 of 15) MSTD|LTR|ERVL-MaLR 331817 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 219.5-27 chr3 62791714 62792180 + 1 NA intron (NM_003716, intron 1 of 29) intron (NM_003716, intron 1 of 29) 83469 NM_183394 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 128.5-65 chr6 22395241 22395581 + 1 NA Intergenic Intergenic -92576 NM_001163558 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 205.667-56 chr8 19654581 19655004 + 1 NA intron (NR_148898, intron 1 of 9) AluJo|SINE|Alu 27791 NM_018371 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 159.667-65 chr4 56409758 56410129 + 1 NA intron (NR_156493, intron 1 of 10) intron (NR_156493, intron 1 of 10) -22435 NM_001286672 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 146.667-15 chr11 42236644 42236961 + 1 NA intron (NR_038309, intron 4 of 5) intron (NR_038309, intron 4 of 5) 16888 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 170.167-31 chr2 147691197 147691429 + 1 NA Intergenic Intergenic -153204 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 200.5-45 chr8 126602826 126603253 + 1 NA Intergenic AluSx1|SINE|Alu -44561 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 214.333-4 chr1 182281783 182282033 + 1 NA intron (NR_104175, intron 2 of 2) L2|LINE|L2 32153 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 169.5-47 chr4 48125009 48125437 + 1 NA intron (NM_003328, intron 1 of 14) intron (NM_003328, intron 1 of 14) 9027 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 124.333-47 chr2 124014347 124014547 + 1 NA non-coding (NR_147976, exon 3 of 3) non-coding (NR_147976, exon 3 of 3) 10727 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 356.333 chr12 33921411 33922085 + 1 NA Intergenic L1PREC2|LINE|L1 -100748 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 315.167-9 chr17 51808303 51808923 + 1 NA intron (NM_001082533, intron 4 of 9) L1ME4c|LINE|L1 350101 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 312.167-2 chr11 109149974 109150376 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -272015 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 551.667 chr14 58372254 58373449 + 1 NA 3' UTR (NM_023000, exon 24 of 24) 3' UTR (NM_023000, exon 24 of 24) -23079 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 216.333-13 chr14 48992012 48992252 + 1 NA Intergenic Intergenic 594248 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 153.667-31 chr17 60265738 60265911 + 1 NA intron (NM_032582, intron 8 of 33) intron (NM_032582, intron 8 of 33) -34179 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 291.333-3 chr12 20159512 20159949 + 1 NA Intergenic L3|LINE|CR1 -31829 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 122.167-42 chr3 21838416 21838685 + 1 NA Intergenic Intergenic -87340 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 175.667-72 chr8 122198178 122198696 + 1 NA Intergenic Intergenic 370207 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 283.333-8 chr3 87538009 87538647 + 1 NA Intergenic AluSc8|SINE|Alu -254378 NM_001322208 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 201.5-3 chr1 213400869 213401170 + 1 NA Intergenic Intergenic 349778 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 145.333-40 chr2 159764623 159764822 + 1 NA intron (NM_001282805, intron 11 of 11) intron (NM_001282805, intron 11 of 11) 30758 NM_001282807 64844 Hs.529272 NM_022826 ENSG00000136536 MARCH7 AXO|AXOT|MARCH-VII|RNF177 membrane associated ring-CH-type finger 7 protein-coding 190.333-22 chr17 15043236 15043557 + 1 NA intron (NR_135638, intron 1 of 1) intron (NR_135638, intron 1 of 1) 12421 NR_033371 94150 Hs.147654 NR_033371 ENSG00000259944 CDRT7 LINC00025|NCRNA00025 CMT1A duplicated region transcript 7 ncRNA 357.5 chr10 53506808 53507270 + 1 NA Intergenic Intergenic -735339 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 181.333-7 chr10 87574024 87574557 + 1 NA Intergenic L1MEi|LINE|L1 66457 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 379.333-3 chr3 153201874 153202328 + 1 NA Intergenic Charlie1a|DNA|hAT-Charlie 39875 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 187.333-34 chr2 58877202 58877493 + 1 NA intron (NR_033873, intron 3 of 13) intron (NR_033873, intron 3 of 13) -340361 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 141.667-74 chr4 46385109 46385311 + 1 NA intron (NM_001114175, intron 2 of 8) intron (NM_001114175, intron 2 of 8) 4169 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 191.5-28 chr20 9924946 9925516 + 1 NA Intergenic L1M5|LINE|L1 -61102 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 361.5-5 chr7 31326451 31326957 + 1 NA Intergenic Intergenic 14022 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 144.833-53 chr4 5131361 5131655 + 1 NA intron (NM_001306082, intron 1 of 12) L2a|LINE|L2 80028 NM_001345969 55351 Hs.133062 NM_018401 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 145.5-54 chr4 72225849 72226008 + 1 NA Intergenic Intergenic 186796 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 150.667-86 chr7 43306896 43307166 + 1 NA intron (NM_001287059, intron 2 of 27) intron (NM_001287059, intron 2 of 27) 156136 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 194.333-24 chr3 35749801 35750035 + 1 NA intron (NM_016300, intron 18 of 19) L1MD|LINE|L1 5442 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 191.667-2 chr1 162866405 162866623 + 1 NA intron (NM_178550, intron 1 of 3) L1ME1|LINE|L1 2301 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 325.333-5 chr22 28471285 28472155 + 1 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 11851 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 259.5-18 chr6 86744908 86745228 + 1 NA Intergenic Intergenic -192460 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 144.667-78 chr5 16368078 16368387 + 1 NA Intergenic Intergenic 72870 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 265.667-3 chr1 197613121 197613778 + 1 NA intron (NR_125340, intron 10 of 19) intron (NR_125340, intron 10 of 19) 162031 NM_001300858 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 223.167-3 chr10 93704250 93704832 + 1 NA Intergenic Intergenic -1582 NM_001347714 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 265.667-14 chr3 115656408 115656714 + 1 NA intron (NM_002045, intron 1 of 2) intron (NM_002045, intron 1 of 2) 33051 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 318.5-12 chr8 139542597 139543242 + 1 NA Intergenic Intergenic 160204 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 165.667-58 chr5 80356959 80357201 + 1 NA Intergenic L1ME4a|LINE|L1 -5114 NR_003665 441089 Hs.568291 NR_003665 CRSP8P - mediator complex subunit 27 pseudogene pseudo 168.667-36 chr2 138714409 138714718 + 1 NA intron (NM_007226, intron 1 of 1) intron (NM_007226, intron 1 of 1) 65827 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 152.167-36 chr20 19181429 19181597 + 1 NA Intergenic Intergenic -31129 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 215.333-47 chr7 106746400 106746817 + 1 NA Intergenic Intergenic -85450 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 183.333-6 chr1 163598674 163599069 + 1 NA Intergenic MER44C|DNA|TcMar-Tigger -175680 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 150.833-37 chr5 13896464 13896740 + 1 NA intron (NM_001369, intron 15 of 78) L2a|LINE|L2 47878 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 239.333-24 chr8 78527673 78527998 + 1 NA intron (NM_181839, intron 1 of 2) intron (NM_181839, intron 1 of 2) 11495 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 181.167-19 chr4 31615789 31615999 + 1 NA Intergenic MER101-int|LTR|ERV1 109350 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 169.333-4 chr1 119831247 119831733 + 1 NA Intergenic L1PA11|LINE|L1 13390 NM_001047980 343505 NM_001047980 NBPF7 - NBPF member 7 protein-coding 229.333-32 chr7 104086352 104086816 + 1 NA Intergenic L1MB7|LINE|L1 -96926 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 325.667-5 chr2 62943282 62943912 + 1 NA intron (NM_001142615, intron 11 of 22) intron (NM_001142615, intron 11 of 22) 104114 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 138.167-6 chr10 48573070 48573307 + 1 NA intron (NR_144642, intron 2 of 9) L3|LINE|CR1 31885 NM_001256024 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 158.667-89 chr8 88598872 88599340 + 1 NA Intergenic MSTC-int|LTR|ERVL-MaLR -271623 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 180.667-15 chr12 30655830 30656183 + 1 NA intron (NM_006390, intron 17 of 24) intron (NM_006390, intron 17 of 24) 21238 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 175.5-29 chr20 32548116 32548388 + 1 NA intron (NM_001256798, intron 1 of 10) MIRb|SINE|MIR 37081 NM_001256798 140688 Hs.516978 NM_080616 ENSG00000197183 NOL4L C20orf112|C20orf113 nucleolar protein 4 like protein-coding 259.5-7 chr17 57391578 57391936 + 1 NA intron (NM_001322250, intron 5 of 13) intron (NM_001322250, intron 5 of 13) 131840 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 199.667-19 chr16 29793996 29794397 + 1 NA intron (NM_001256269, intron 2 of 14) MIR|SINE|MIR 3228 NM_001256270 3835 Hs.612151 NM_007317 ENSG00000079616 KIF22 A-328A3.2|KID|KNSL4|OBP|OBP-1|OBP-2|SEMDJL2 kinesin family member 22 protein-coding 246.667-14 chr20 13135500 13135979 + 1 NA intron (NM_001349945, intron 10 of 12) intron (NM_001349945, intron 10 of 12) -85535 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 249.667-47 chr8 138059023 138059297 + 1 NA intron (NR_161374, intron 1 of 7) L2a|LINE|L2 24385 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 183.333-61 chr8 102211951 102212326 + 1 NA intron (NM_001172477, intron 8 of 8) MIR|SINE|MIR 26693 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 152.667-24 chr13 39322178 39322467 + 1 NA Intergenic Intergenic 280871 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 174.667-3 chr1 99256066 99256353 + 1 NA Intergenic L2c|LINE|L2 -8083 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 129.333-86 chr7 10395266 10395643 + 1 NA Intergenic L1ME1|LINE|L1 -307222 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 132.333-66 chr21 21357692 21357998 + 1 NA intron (NM_001352592, intron 9 of 18) A-rich|Low_complexity|Low_complexity 210683 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 183.667-37 chr2 120502041 120502349 + 1 NA Intergenic AluJr4|SINE|Alu -35846 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 155.667-25 chr14 59625712 59625902 + 1 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) 5007 NM_206852 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 171.333-4 chr1 101620421 101620652 + 1 NA Intergenic L2a|LINE|L2 226544 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 215.5-3 chr1 189053513 189053771 + 1 NA Intergenic L2|LINE|L2 1422368 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 222.5-29 chr7 138681529 138681955 + 1 NA Intergenic AluSz6|SINE|Alu -2697 NM_001139456 136306 Hs.99414 NM_174959 ENSG00000157703 SVOPL - SVOP like protein-coding 137.333-89 chr6 162907923 162908076 + 1 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 146162 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 144.667-11 chr1 200792166 200792483 + 1 NA intron (NM_001297707, intron 2 of 17) L1MD1|LINE|L1 52752 NM_001297707 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 175.5-56 chr7 70458269 70458542 + 1 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -673739 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 140.667-62 chr4 38523535 38523830 + 1 NA promoter-TSS (NR_110951) promoter-TSS (NR_110951) -502 NR_110951 101928776 Hs.586147 NR_110951 ENSG00000249534 LINC01258 - long intergenic non-protein coding RNA 1258 ncRNA 138.667-85 chr6 55632801 55633127 + 1 NA Intergenic Intergenic -53750 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 209.333-5 chr10 24885872 24886091 + 1 NA intron (NM_020200, intron 3 of 8) L1MC1|LINE|L1 66625 NM_020200 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 293.333-2 chr12 18326580 18327039 + 1 NA intron (NM_001288774, intron 8 of 32) intron (NM_001288774, intron 8 of 32) 65269 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 162.167-51 chr8 86510600 86510831 + 1 NA intron (NM_001317807, intron 1 of 9) MLT1F|LTR|ERVL-MaLR -1935 NM_001286719 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 156.333-29 chr14 30287037 30287297 + 1 NA Intergenic Intergenic -271956 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 200.667-30 chr2 16518394 16518927 + 1 NA Intergenic Intergenic 147174 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 143.333-93 chr8 130947445 130947722 + 1 NA intron (NM_001115, intron 3 of 17) intron (NM_001115, intron 3 of 17) 93326 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 308.667-2 chr13 52099726 52100188 + 1 NA intron (NM_199289, intron 11 of 21) intron (NM_199289, intron 11 of 21) -28938 NR_110306 101929657 Hs.637461 NR_110306 ENSG00000273523 LOC101929657 - uncharacterized LOC101929657 ncRNA 173.667-14 chr12 95581560 95581814 + 1 NA Intergenic Intergenic -30211 NM_032147 84101 Hs.646421 NM_032147 ENSG00000136014 USP44 - ubiquitin specific peptidase 44 protein-coding 155.833-60 chr5 167838464 167838803 + 1 NA intron (NM_001080428, intron 1 of 24) intron (NM_001080428, intron 1 of 24) 83704 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 143.333-54 chr3 5922415 5922578 + 1 NA Intergenic Intergenic -672241 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 147.667-63 chr6 101708154 101708419 + 1 NA intron (NM_001166247, intron 6 of 16) intron (NM_001166247, intron 6 of 16) 309301 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 303.667-7 chr3 66757187 66757756 + 1 NA Intergenic Tigger2a|DNA|TcMar-Tigger -19135 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 186.5-60 chr6 132337802 132338009 + 1 NA intron (NM_015529, intron 4 of 11) intron (NM_015529, intron 4 of 11) 63570 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 119.333-82 chr5 38061948 38062303 + 1 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 36428 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 120.333-89 chr4 101919250 101919420 + 1 NA intron (NM_017935, intron 7 of 16) intron (NM_017935, intron 7 of 16) 105493 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 141.5-19 chr12 23812949 23813094 + 1 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) 136649 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 329.5-5 chr12 10636003 10636548 + 1 NA intron (NM_018423, intron 2 of 10) intron (NM_018423, intron 2 of 10) -22666 NR_135121 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 226.667-10 chr12 44196290 44196657 + 1 NA intron (NM_001286213, intron 3 of 6) L1M2|LINE|L1 360392 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 322.667-2 chr18 74320501 74321078 + 1 NA intron (NM_001174123, intron 3 of 13) intron (NM_001174123, intron 3 of 13) 4950 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 117.667-121 chr8 84638552 84638787 + 1 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -67258 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 191.5-16 chr13 39938590 39939176 + 1 NA Intergenic MER121|DNA|hAT? -242926 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 164.667-62 chr5 162607248 162607617 + 1 NA Intergenic Intergenic 539790 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 282.667-3 chr11 39096843 39097412 + 1 NA Intergenic Intergenic 448269 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 159.5-3 chr10 25929530 25929980 + 1 NA intron (NR_120650, intron 2 of 3) MIR|SINE|MIR 3955 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 175.667-58 chr6 110779579 110779841 + 1 NA intron (NM_001300963, intron 1 of 13) AluJo|SINE|Alu -34911 NM_001287215 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 262.667-15 chr18 72121231 72121547 + 1 NA Intergenic MER2|DNA|TcMar-Tigger -339163 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 233.5-2 chr1 107159019 107159340 + 1 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 11110 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 200.667-36 chr3 98647717 98648160 + 1 NA Intergenic L1M7|LINE|L1 -54327 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 115.333-51 chr2 58226180 58226368 + 1 NA intron (NM_001114636, intron 4 of 13) intron (NM_001114636, intron 4 of 13) 15106 NR_156742 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 164.5-39 chr20 58959558 58959730 + 1 NA Intergenic Intergenic -21612 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 289.667-5 chr2 220124697 220125258 + 1 NA Intergenic Intergenic -218412 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 154.667-51 chr4 80719487 80720023 + 1 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -310953 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 227.333-36 chr5 138901357 138901625 + 1 NA intron (NM_001324013, intron 4 of 12) AluJr|SINE|Alu 26091 NM_001323988 1495 Hs.445981 NM_001903 ENSG00000044115 CTNNA1 CAP102|MDPT2 catenin alpha 1 protein-coding 142.667-12 chr10 122637742 122637921 + 1 NA intron (NM_004406, intron 38 of 39) Arthur1B|DNA|hAT-Tip100 -35051 NM_001364461 112577516 NM_001364461 LOC112577516 - carbohydrate-binding protein AQN-1-like protein-coding 153.667-44 chr20 1740621 1740874 + 1 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 38999 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 167.333-64 chr8 77038295 77038578 + 1 NA Intergenic Intergenic -37392 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 219.667-27 chr6 70215467 70215763 + 1 NA 3' UTR (NM_078485, exon 32 of 32) 3' UTR (NM_078485, exon 32 of 32) 67582 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 309.167-2 chr6 48897964 48898396 + 1 NA Intergenic Intergenic 565073 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 220.5-14 chr2 27847909 27848170 + 1 NA exon (NM_001287580, exon 4 of 9) exon (NM_001287580, exon 4 of 9) -40670 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 313.667-8 chr2 57153887 57154340 + 1 NA Intergenic Intergenic -753538 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 207.5 chr1 194090644 194090954 + 1 NA Intergenic AluSx1|SINE|Alu 786054 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 193.333-48 chr7 13343521 13343985 + 1 NA Intergenic L1PB3|LINE|L1 642761 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 137.333-26 chr14 69976769 69976986 + 1 NA intron (NM_001034852, intron 4 of 11) intron (NM_001034852, intron 4 of 11) -1256 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 228.333-7 chr12 110675747 110676149 + 1 NA intron (NM_001256413, intron 2 of 6) intron (NM_001256413, intron 2 of 6) 13167 NM_032369 84329 Hs.211511 NM_032369 ENSG00000122986 HVCN1 HV1|VSOP hydrogen voltage gated channel 1 protein-coding 216.167 chr1 7272086 7272536 + 1 NA intron (NM_001349608, intron 4 of 21) L1MB7|LINE|L1 117443 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 372.167-3 chrX 39086684 39087471 + 1 NA Intergenic L1MB3|LINE|L1 240285 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 129.667-58 chr2 200270345 200270488 + 1 NA Intergenic Intergenic -35463 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 119.5-73 chr4 154454687 154454948 + 1 NA intron (NM_001358235, intron 1 of 19) intron (NM_001358235, intron 1 of 19) 36982 NM_001358235 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 234.333-25 chr4 78918697 78919089 + 1 NA non-coding (NR_146462, exon 7 of 7) non-coding (NR_146462, exon 7 of 7) 20545 NR_146463 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 258.333-25 chr4 127703301 127703727 + 1 NA intron (NM_015693, intron 9 of 15) L1ME3G|LINE|L1 -26886 NM_001318467 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 199.333-24 chr2 211473794 211474089 + 1 NA intron (NM_001042599, intron 20 of 26) LTR68|LTR|ERV1 856370 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 148.333-103 chr8 79573952 79574316 + 1 NA Intergenic Intergenic -36983 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 236.333-10 chr15 55192813 55193114 + 1 NA intron (NM_016304, intron 1 of 5) intron (NM_016304, intron 1 of 5) 3978 NM_016304 51187 Hs.274772 NM_016304 ENSG00000137876 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 182.667-64 chrX 83112824 83113096 + 1 NA Intergenic L1MD2|LINE|L1 -395330 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 298.167-9 chr5 59345317 59345778 + 1 NA intron (NM_001165899, intron 3 of 16) MamSINE1|SINE|tRNA-RTE 11423 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 133.333-29 chr12 28966956 28967263 + 1 NA Intergenic Intergenic -182169 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 301.667-8 chr20 21517779 21518335 + 1 NA Intergenic Intergenic -3993 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 163.5-22 chr14 49417224 49417491 + 1 NA Intergenic Intergenic 169023 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 134.333-44 chr16 87276984 87277254 + 1 NA intron (NR_104667, intron 3 of 4) FRAM|SINE|Alu 15333 NR_104667 101928682 Hs.149004 NR_104667 ENSG00000261697 LOC101928682 - uncharacterized LOC101928682 ncRNA 186.333-56 chr8 130761617 130761906 + 1 NA Intergenic Charlie8|DNA|hAT-Charlie 279148 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 358.167-2 chr6 37576905 37577615 + 1 NA Intergenic LTR16A2|LTR|ERVL -21838 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 197.5-41 chr4 63743164 63743526 + 1 NA Intergenic Intergenic 666105 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 167.667-40 chr2 47543439 47543653 + 1 NA intron (NM_022055, intron 1 of 1) intron (NM_022055, intron 1 of 1) 16009 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 169.333-72 chr8 107319517 107319778 + 1 NA intron (NM_001199859, intron 4 of 8) intron (NM_001199859, intron 4 of 8) 16868 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 240.333-8 chr11 114702062 114702541 + 1 NA intron (NM_182495, intron 3 of 5) intron (NM_182495, intron 3 of 5) 23774 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 128.5-32 chr18 7739590 7739831 + 1 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 172394 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 181.667-55 chr5 179463798 179464016 + 1 NA Intergenic L1MB8|LINE|L1 52804 NR_149047 100128340 Hs.710582 NR_149047 LOC100128340 - uncharacterized LOC100128340 ncRNA 341.333-3 chr3 188428666 188429187 + 1 NA intron (NM_001167672, intron 2 of 9) intron (NM_001167672, intron 2 of 9) 139740 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 331.667-4 chr2 210835767 210836366 + 1 NA Intergenic L1MEg|LINE|L1 218495 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 177.833-27 chr3 180003649 180004067 + 1 NA intron (NM_016559, intron 1 of 14) intron (NM_016559, intron 1 of 14) -29633 NM_001349386 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 218.333-21 chr2 181848271 181848535 + 1 NA Intergenic Intergenic -43327 NM_006751 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 227.5-30 chr6 120836705 120837123 + 1 NA Intergenic Intergenic 497566 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 223.667-8 chr15 75642250 75642651 + 1 NA Intergenic L2a|LINE|L2 -2127 NM_018285 55272 Hs.513043 NM_018285 ENSG00000177971 IMP3 BRMS2|C15orf12|MRPS4 IMP U3 small nucleolar ribonucleoprotein 3 protein-coding 161.667-64 chr5 3713934 3714268 + 1 NA Intergenic MER34|LTR|ERV1 118269 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 144.5-27 chr14 67963817 67963978 + 1 NA intron (NM_133509, intron 7 of 10) MIR3|SINE|MIR 140305 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 304.833-2 chr13 27946324 27946659 + 1 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR -7035 NR_135254 100132234 Hs.197435 NR_135254 ENSG00000260704 LINC00543 - long intergenic non-protein coding RNA 543 ncRNA 185.667-23 chr16 80658492 80658864 + 1 NA intron (NM_152342, intron 2 of 6) L1MC5a|LINE|L1 -85870 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 228.333 chr1 188174428 188175006 + 1 NA Intergenic Intergenic 731089 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 240.667-15 chr17 29395732 29396187 + 1 NA intron (NM_025142, intron 1 of 17) AluJb|SINE|Alu 5034 NM_025142 57551 Hs.597434 NM_020791 ENSG00000160551 TAOK1 KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1 TAO kinase 1 protein-coding 130.333-17 chr11 23645702 23646091 + 1 NA Intergenic MER110A|LTR|ERV1 -226706 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 203.167-33 chr5 168822223 168822540 + 1 NA intron (NM_003062, intron 7 of 35) intron (NM_003062, intron 7 of 35) -54126 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 359.167 chr10 34150678 34151293 + 1 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -378305 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 260.5-14 chr3 104882424 104882789 + 1 NA Intergenic Intergenic -484107 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 244.5-17 chr2 166275732 166276108 + 1 NA intron (NM_001365536, intron 16 of 26) intron (NM_001365536, intron 16 of 26) 100024 NM_001365536 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 194.333-49 chr9 126848167 126848402 + 1 NA Intergenic AluSz6|SINE|Alu -12355 NM_001099270 403341 Hs.177633 NM_203482 ENSG00000177125 ZBTB34 ZNF918 zinc finger and BTB domain containing 34 protein-coding 153.167-55 chr7 88093016 88093528 + 1 NA intron (NM_001324421, intron 4 of 28) intron (NM_001324421, intron 4 of 28) -123388 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 209.667-8 chr12 28829311 28829575 + 1 NA Intergenic L1MEc|LINE|L1 -319835 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 221.333-33 chr8 114335737 114336158 + 1 NA Intergenic Intergenic -899008 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 277.333-16 chr6 56017794 56018315 + 1 NA Intergenic LTR33|LTR|ERVL 73608 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 275.5-12 chr8 16156083 16156598 + 1 NA intron (NM_002445, intron 5 of 8) intron (NM_002445, intron 5 of 8) 29932 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 149.667-45 chr2 231044345 231044569 + 1 NA intron (NM_001144994, intron 2 of 2) AluJb|SINE|Alu 6934 NM_001144994 257407 Hs.526596 NM_001144994 ENSG00000204128 C2orf72 - chromosome 2 open reading frame 72 protein-coding 184.667-51 chr9 13752836 13753297 + 1 NA Intergenic Intergenic -174905 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 125.5-75 chr7 83242183 83242404 + 1 NA Intergenic L1MB3|LINE|L1 -79409 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 301.167-5 chr7 86445596 86445993 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR -198115 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 138.833-67 chr5 76618975 76619247 + 1 NA intron (NM_001256566, intron 1 of 1) intron (NM_001256566, intron 1 of 1) 4292 NM_001256566 2151 Hs.42502 NM_004101 ENSG00000164220 F2RL2 PAR-3|PAR3 coagulation factor II thrombin receptor like 2 protein-coding 142.833-13 chr13 114322220 114322466 + 1 NA intron (NM_001164144, intron 2 of 2) intron (NM_001164144, intron 2 of 2) 7840 NM_032436 283489 Hs.7542 NM_032436 ENSG00000198824 CHAMP1 C13orf8|CAMP|CHAMP|MRD40|ZNF828 chromosome alignment maintaining phosphoprotein 1 protein-coding 232.5-18 chr19 32544714 32545090 + 1 NA Intergenic Intergenic -36288 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 190.833-23 chr2 83271510 83271819 + 1 NA Intergenic Intergenic -251150 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 277.333-17 chr7 31673183 31673590 + 1 NA Intergenic MER89|LTR|ERV1 -13631 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 210.833-7 chr14 32027704 32027914 + 1 NA Intergenic Intergenic 48890 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 206.333-29 chr6 152424731 152425114 + 1 NA intron (NM_182961, intron 39 of 145) intron (NM_182961, intron 39 of 145) 44392 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 181.167-22 chr5 25453635 25454126 + 1 NA Intergenic MLT1E2|LTR|ERVL-MaLR 262927 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 150.667-43 chr18 28552258 28552634 + 1 NA Intergenic Intergenic -375316 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 238.5-3 chr1 239692733 239693123 + 1 NA intron (NM_000740, intron 3 of 4) L3b|LINE|CR1 26191 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 113.333-90 chr5 60475892 60476063 + 1 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) -11736 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 139.667-75 chr5 67266215 67266373 + 1 NA Intergenic MER53|DNA|hAT -69495 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 167.5-16 chr11 38300410 38300675 + 1 NA Intergenic L1MC3|LINE|L1 345814 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 228.5-11 chr17 11182491 11182926 + 1 NA Intergenic Intergenic -58505 NM_207386 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 321.167-6 chr3 45853639 45854043 + 1 NA intron (NM_001276378, intron 3 of 11) L2|LINE|L2 -11722 NM_020347 54585 Hs.30824 NM_020347 ENSG00000163818 LZTFL1 BBS17 leucine zipper transcription factor like 1 protein-coding 172.333-69 chr7 41013224 41013594 + 1 NA Intergenic Intergenic -33470 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 147.333-19 chr12 105163287 105163495 + 1 NA intron (NM_001293640, intron 30 of 32) intron (NM_001293640, intron 30 of 32) 55660 NM_015275 23325 Hs.12144 NM_015275 ENSG00000136051 WASHC4 KIAA1033|MRT43|SWIP WASH complex subunit 4 protein-coding 186.5-32 chr17 80737001 80737201 + 1 NA intron (NM_020761, intron 5 of 33) HAL1ME|LINE|L1 68531 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 199.167-36 chr5 147738760 147738984 + 1 NA intron (NM_001270934, intron 1 of 20) LTR78|LTR|ERV1 43856 NM_001282282 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 528.5 chr17 44934788 44935430 + 1 NA promoter-TSS (NR_106841) promoter-TSS (NR_106841) -428 NR_106841 102466734 NR_106841 ENSG00000278223 MIR6783 hsa-mir-6783 microRNA 6783 ncRNA 162.667-38 chr2 39388274 39388634 + 1 NA intron (NM_003618, intron 1 of 33) L1MEd|LINE|L1 48831 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 236.167-13 chr2 227799918 227800246 + 1 NA Intergenic Intergenic -13760 NM_004591 6364 Hs.75498 NM_004591 ENSG00000115009 CCL20 CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38 C-C motif chemokine ligand 20 protein-coding 195.833-14 chr19 27967136 27967665 + 1 NA intron (NR_146734, intron 5 of 7) L1PA13|LINE|L1 -173460 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 135.667-57 chr2 167614269 167614463 + 1 NA Intergenic L1M5|LINE|L1 -204306 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 215.167-17 chr3 7846743 7847138 + 1 NA Intergenic Intergenic 169367 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 272.167-11 chr14 60756804 60757481 + 1 NA intron (NM_001177963, intron 1 of 6) OldhAT1|DNA|hAT-Ac 22381 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 135.833-55 chr5 18714504 18714653 + 1 NA Intergenic L1MC4|LINE|L1 907304 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 187.833-7 chr11 10758249 10758493 + 1 NA intron (NM_014633, intron 5 of 24) L2a|LINE|L2 7125 NM_001346279 9646 Hs.725151 NM_014633 ENSG00000198730 CTR9 SH2BP1|TSBP|p150|p150TSP CTR9 homolog, Paf1/RNA polymerase II complex component protein-coding 184.333-65 chr8 101796420 101796649 + 1 NA intron (NM_001040628, intron 4 of 7) L1MEg|LINE|L1 -5565 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 153.333-11 chr11 15344352 15344543 + 1 NA Intergenic L2a|LINE|L2 195345 NM_001278315 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 217.5-28 chr2 209013597 209014118 + 1 NA Intergenic Intergenic -410190 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 257.667-9 chr2 79525390 79525743 + 1 NA intron (NM_001282598, intron 1 of 17) (TTACA)n|Simple_repeat|Simple_repeat 2383 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 226.333-21 chr2 160880971 160881207 + 1 NA Intergenic L1MC3|LINE|L1 -255866 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 141.5-48 chr2 121769713 121769885 + 1 NA Intergenic Intergenic 14148 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 197.667-9 chr10 114440305 114440525 + 1 NA intron (NM_001352440, intron 18 of 20) L2c|LINE|L2 -35637 NM_001351080 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 332.333-4 chr7 6411666 6412097 + 1 NA intron (NM_001142936, intron 11 of 12) intron (NM_001142936, intron 11 of 12) 36073 NM_139179 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 158.667-75 chr6 55980963 55981291 + 1 NA Intergenic Intergenic -105537 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 176.667-85 chr9 74539072 74539597 + 1 NA intron (NM_006914, intron 1 of 9) intron (NM_006914, intron 1 of 9) -40781 NR_125791 103752585 Hs.635501 NR_125791 RORB-AS1 - RORB antisense RNA 1 ncRNA 257.667-18 chr7 87153547 87154076 + 1 NA intron (NM_021145, intron 1 of 19) intron (NM_021145, intron 1 of 19) 1257 NM_021145 9988 Hs.196129 NM_021145 ENSG00000135164 DMTF1 DMP1|DMTF|MRUL|hDMP1 cyclin D binding myb like transcription factor 1 protein-coding 234.667-17 chr16 85794172 85794700 + 1 NA intron (NM_006067, intron 1 of 4) AluSx|SINE|Alu 2021 NR_135193 101928557 Hs.662217 NR_135193 ENSG00000270159 LOC101928557 - uncharacterized LOC101928557 ncRNA 189.667-42 chr5 148065872 148066107 + 1 NA intron (NM_006846, intron 2 of 32) L2a|LINE|L2 2009 NM_001127698 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 148.333-4 chr1 99515527 99515759 + 1 NA Intergenic L1MA5A|LINE|L1 -27839 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 146.667-42 chr16 76834069 76834260 + 1 NA Intergenic Intergenic -34772 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 217.333-42 chr8 136885504 136885731 + 1 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 354819 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 171.333-16 chr10 60934239 60934447 + 1 NA intron (NM_001350908, intron 2 of 11) intron (NM_001350908, intron 2 of 11) 9842 NM_014836 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 215.333-33 chr4 37061910 37062557 + 1 NA Intergenic Intergenic 60454 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 187.667-10 chr11 96880928 96881146 + 1 NA Intergenic Intergenic 372612 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 291.667-22 chr8 57821617 57822001 + 1 NA Intergenic L1PB1|LINE|L1 75660 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 170.333-3 chr1 84160500 84160764 + 1 NA intron (NM_001300916, intron 1 of 8) L1MB8|LINE|L1 -3552 NM_001242858 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 227.333-25 chr3 188965743 188966165 + 1 NA Intergenic Intergenic -18315 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 158.667-41 chr2 28953510 28953690 + 1 NA Intergenic L1M5|LINE|L1 25617 NR_145755 109617012 NR_145755 ENSG00000265706 SNORD53B - small nucleolar RNA, C/D box 53B snoRNA 191.167-15 chr2 196944974 196945454 + 1 NA Intergenic AluSg|SINE|Alu -18507 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 144.833-20 chr14 51107392 51107569 + 1 NA Intergenic Intergenic -11776 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 179.333-31 chr2 115639293 115639506 + 1 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 295584 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 292.833-5 chr14 49477606 49477939 + 1 NA Intergenic Intergenic 108608 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 242.333-8 chr2 45045296 45045570 + 1 NA Intergenic (TCCT)n|Simple_repeat|Simple_repeat -35981 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 221.667-16 chr2 60870873 60871497 + 1 NA intron (NR_033980, intron 1 of 2) AluJo|SINE|Alu 10129 NR_033980 400957 Hs.170358 NR_033980 ENSG00000228414 LINC01185 - long intergenic non-protein coding RNA 1185 ncRNA 267.667-18 chr4 122898904 122899506 + 1 NA TTS (NM_002006) TTS (NM_002006) 23392 NM_007083 11162 Hs.558459 NM_007083 ENSG00000170917 NUDT6 ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1 nudix hydrolase 6 protein-coding 132.833-19 chr13 49005596 49005815 + 1 NA intron (NR_103528, intron 1 of 25) intron (NR_103528, intron 1 of 25) 29043 NR_103528 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 208.333 chr1 80853297 80853579 + 1 NA Intergenic L2c|LINE|L2 212151 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 324.667-9 chr9 36093080 36093751 + 1 NA intron (NM_021111, intron 10 of 20) L1MA8|LINE|L1 -43121 NR_104637 152007 Hs.493819 NM_022343 ENSG00000122694 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis related 2 protein-coding 135.333-65 chr6 28087708 28088036 + 1 NA intron (NM_003447, intron 3 of 3) intron (NM_003447, intron 3 of 3) -2935 NR_024063 221584 Hs.634723 NR_024063 ZSCAN12P1 ZNF187p1|ZNF305P1|ZNF96L1|ZNF96P1|ZSCAN12L1|dJ313I6.7 zinc finger and SCAN domain containing 12 pseudogene 1 pseudo 262.667-13 chr17 61334813 61335248 + 1 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 32674 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 174.333-27 chr2 34387211 34387436 + 1 NA Intergenic Intergenic -290234 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 191.5-32 chr3 38096246 38096620 + 1 NA intron (NM_007335, intron 14 of 36) intron (NM_007335, intron 14 of 36) 40694 NM_001607 30 Hs.643487 NM_001607 ENSG00000060971 ACAA1 ACAA|PTHIO|THIO acetyl-CoA acyltransferase 1 protein-coding 156.5-69 chr5 62577826 62578071 + 1 NA promoter-TSS (NM_181506) promoter-TSS (NM_181506) -787 NR_073584 101180901 Hs.482269 NR_073584 ENSG00000086200 IPO11-LRRC70 - IPO11-LRRC70 readthrough ncRNA 121.333-88 chr5 159455366 159455627 + 1 NA intron (NR_027110, intron 4 of 6) intron (NR_027110, intron 4 of 6) 10780 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 252.5-16 chr2 231942383 231942885 + 1 NA Intergenic L1MB7|LINE|L1 -16238 NM_024409 4880 Hs.247916 NM_024409 ENSG00000163273 NPPC CNP|CNP2 natriuretic peptide C protein-coding 173.833-26 chr2 3855226 3855409 + 1 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 118715 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 196.833-12 chr17 58586555 58587098 + 1 NA intron (NM_031272, intron 17 of 31) MER6A|DNA|TcMar-Tigger -42498 NM_001368772 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 139.333-15 chr10 94931181 94931396 + 1 NA Intergenic L1MC1|LINE|L1 -7370 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 200.667-40 chr4 141958980 141959242 + 1 NA Intergenic Intergenic 322528 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 147.333-22 chr14 26767271 26767492 + 1 NA intron (NR_147061, intron 3 of 6) intron (NR_147061, intron 3 of 6) -41967 NR_110557 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 134.667-17 chr11 19212953 19213179 + 1 NA Intergenic Intergenic -11083 NM_003476 8048 Hs.83577 NM_003476 ENSG00000129170 CSRP3 CLP|CMD1M|CMH12|CRP3|LMO4|MLP cysteine and glycine rich protein 3 protein-coding 162.333-40 chr20 42634246 42634479 + 1 NA intron (NM_133170, intron 7 of 31) MLT1J2|LTR|ERVL-MaLR -51121 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 146.5-94 chr8 134518346 134518621 + 1 NA intron (NM_020863, intron 13 of 15) L1MC4a|LINE|L1 -79588 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 270.833-13 chr2 188735202 188735608 + 1 NA intron (NR_161166, intron 1 of 1) intron (NR_161166, intron 1 of 1) 54718 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 223.333-19 chr2 147149573 147150023 + 1 NA Intergenic MER52A|LTR|ERV1 562741 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 163.5-8 chr10 33750350 33750553 + 1 NA Intergenic Intergenic 22229 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 200.167-15 chr14 47634130 47634444 + 1 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 40667 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 242.5-17 chr6 63694431 63694884 + 1 NA exon (NM_015153, exon 5 of 15) exon (NM_015153, exon 5 of 15) 48131 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 217.667-41 chr6 63143392 63143642 + 1 NA Intergenic L1M1|LINE|L1 176460 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 119.5-84 chr5 139600486 139600685 + 1 NA intron (NM_181838, intron 3 of 7) intron (NM_181838, intron 3 of 7) 39246 NM_003339 7322 Hs.108332 NM_003339 ENSG00000131508 UBE2D2 E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B ubiquitin conjugating enzyme E2 D2 protein-coding 242.5-12 chr5 54239264 54239733 + 1 NA intron (NM_019087, intron 1 of 4) MLT1J|LTR|ERVL-MaLR 71075 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 209.167-10 chr14 50383627 50384018 + 1 NA intron (NM_001282236, intron 2 of 8) intron (NM_001282236, intron 2 of 8) 13059 NM_001367065 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 179.667-24 chr2 42247985 42248281 + 1 NA intron (NM_001145076, intron 2 of 21) AluJr4|SINE|Alu -77902 NR_110584 102723824 Hs.639826 NR_110584 LOC102723824 - uncharacterized LOC102723824 ncRNA 317.333-6 chr2 52169349 52169800 + 1 NA intron (NR_135237, intron 7 of 10) Tigger15a|DNA|TcMar-Tigger -201074 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 169.5-54 chr4 185477879 185478141 + 1 NA Intergenic L1MC4|LINE|L1 -6277 NM_001145411 256309 Hs.41101 NM_152775 ENSG00000168491 CCDC110 CT52|KM-HN-1|KMHN1 coiled-coil domain containing 110 protein-coding 173.5-57 chr8 140995938 140996239 + 1 NA intron (NM_001352737, intron 1 of 32) (AAAAC)n|Simple_repeat|Simple_repeat 4916 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 123.667-46 chr2 5067607 5067783 + 1 NA Intergenic Intergenic -411473 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 273.333-21 chr6 18195043 18195518 + 1 NA intron (NM_001364614, intron 10 of 21) L1MB5|LINE|L1 39858 NM_001364614 221656 Hs.709336 NM_153042 ENSG00000165097 KDM1B AOF1|C6orf193|LSD2 lysine demethylase 1B protein-coding 342.833-2 chr11 40909464 40909973 + 1 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) 549918 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 275.333 chr1 51215163 51215469 + 1 NA intron (NR_147076, intron 1 of 1) LTR29|LTR|ERV1 19780 NR_147076 105378716 NR_147076 ENSG00000203356 LINC01562 - long intergenic non-protein coding RNA 1562 ncRNA 207.833-24 chr3 75018970 75019256 + 1 NA Intergenic Intergenic -195363 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 118.5-55 chr2 201776755 201776915 + 1 NA intron (NM_020919, intron 1 of 33) intron (NM_020919, intron 1 of 33) 4098 NM_020919 57679 Hs.471096 NM_020919 ENSG00000003393 ALS2 ALS2CR6|ALSJ|IAHSP|PLSJ alsin Rho guanine nucleotide exchange factor ALS2 protein-coding 246.167-24 chr5 90325261 90325780 + 1 NA Intergenic L1PA15|LINE|L1 -35449 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 186.667-24 chr15 52791940 52792207 + 1 NA Intergenic Intergenic -1737 NM_004498 3175 Hs.555318 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 253.5-24 chr7 90519832 90520266 + 1 NA Intergenic L1ME1|LINE|L1 50410 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 189.333-48 chr7 46454233 46454486 + 1 NA Intergenic Intergenic 242763 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 131.833-43 chr20 37499445 37499713 + 1 NA Intergenic L1M5|LINE|L1 20724 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 280.333-15 chr5 25296868 25297443 + 1 NA intron (NR_136209, intron 1 of 3) MIRb|SINE|MIR 106202 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 123.667-112 chr8 117168952 117169154 + 1 NA intron (NM_173851, intron 6 of 7) MIR|SINE|MIR 34058 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 160.333-53 chr5 161488987 161489220 + 1 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 59021 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 230.5-15 chr5 55786840 55787150 + 1 NA intron (NM_024415, intron 14 of 21) intron (NM_024415, intron 14 of 21) 20110 NM_001166534 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 180.667-38 chr2 189450902 189451317 + 1 NA intron (NM_001303096, intron 4 of 21) intron (NM_001303096, intron 4 of 21) 9635 NM_032168 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 123.333-110 chr8 107430871 107431051 + 1 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 66957 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 149.667-58 chr4 86503120 86503299 + 1 NA Intergenic Intergenic 39343 NR_039657 100616463 NR_039657 ENSG00000266515 MIR4452 - microRNA 4452 ncRNA 180.667-65 chr7 8067604 8067848 + 1 NA intron (NM_138426, intron 5 of 7) L1PA15|LINE|L1 98930 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 134.667-18 chr11 96485242 96485455 + 1 NA intron (NR_047481, intron 1 of 4) MIRb|SINE|MIR 21529 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 131.833-49 chr4 58262073 58262240 + 1 NA Intergenic Intergenic 274172 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 364.5-5 chr18 13706449 13706885 + 1 NA intron (NM_001098801, intron 1 of 4) MER57-int|LTR|ERV1 19891 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 252.667-27 chr8 101882965 101883367 + 1 NA intron (NM_001040628, intron 4 of 7) AluJr|SINE|Alu -92197 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 264.5-3 chr11 37047960 37048276 + 1 NA Intergenic Intergenic -449839 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 341.333 chr10 18469278 18469752 + 1 NA intron (NM_201593, intron 3 of 13) intron (NM_201593, intron 3 of 13) 68940 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 141.333-13 chr10 84546156 84546411 + 1 NA Intergenic Intergenic 121114 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 158.333-41 chr2 79112614 79112846 + 1 NA Intergenic MSTD-int|LTR|ERVL-MaLR -7758 NM_002909 5967 Hs.49407 NM_002909 ENSG00000115386 REG1A ICRF|P19|PSP|PSPS|PSPS1|PTP|REG regenerating family member 1 alpha protein-coding 247.667-4 chr10 77232220 77232726 + 1 NA intron (NM_001322838, intron 3 of 29) L1MB8|LINE|L1 91642 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 312.667-10 chr6 155409182 155409713 + 1 NA intron (NM_015718, intron 11 of 13) intron (NM_015718, intron 11 of 13) 46392 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 154.667-44 chr21 24600208 24600414 + 1 NA Intergenic L1M3|LINE|L1 171571 NR_135520 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 199.333-10 chr14 54304497 54304745 + 1 NA Intergenic L1MC4|LINE|L1 -92247 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 203.667-4 chr1 163278175 163278442 + 1 NA intron (NM_001254748, intron 2 of 5) L1MA5|LINE|L1 43483 NM_001254748 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 125.333-115 chr7 110485228 110485465 + 1 NA Intergenic Intergenic -525133 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 114.333-78 chr20 35096971 35097141 + 1 NA Intergenic MIRb|SINE|MIR -4241 NM_199368 26133 Hs.168073 NM_015638 ENSG00000100991 TRPC4AP C20orf188|PPP1R158|TRRP4AP|TRUSS transient receptor potential cation channel subfamily C member 4 associated protein protein-coding 202.167-31 chr7 16626501 16626869 + 1 NA intron (NM_020319, intron 3 of 9) intron (NM_020319, intron 3 of 9) 19069 NM_020319 57037 Hs.157378 NM_020319 ENSG00000106524 ANKMY2 ZMYND20 ankyrin repeat and MYND domain containing 2 protein-coding 145.833-18 chr11 91501112 91501475 + 1 NA Intergenic Intergenic -632091 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 185.333-28 chr2 15963573 15963936 + 1 NA Intergenic Intergenic -21321 NR_161163 10408 Hs.651453 NR_110230 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand ncRNA 151.667-2 chr1 69167465 69167740 + 1 NA intron (NR_146608, intron 3 of 4) intron (NR_146608, intron 3 of 4) 111704 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 136.667-26 chr15 65324081 65324435 + 1 NA Intergenic Intergenic 19581 NR_002757 26832 NR_002757 ENSG00000200156 RNU5B-1 RNU5B|RNU5B-1P|U5B1 RNA, U5B small nuclear 1 snRNA 192.667-5 chr1 197877972 197878191 + 1 NA Intergenic L1MB3|LINE|L1 -24549 NM_001024594 388722 Hs.61329 NM_001024594 ENSG00000203724 C1orf53 - chromosome 1 open reading frame 53 protein-coding 129.667-62 chr20 57964773 57964931 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -39052 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 334.333-4 chr20 59889085 59889533 + 1 NA intron (NM_014258, intron 24 of 44) L1MC2|LINE|L1 44328 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 236.667-23 chr3 102923077 102923375 + 1 NA Intergenic L1MCb|LINE|L1 488211 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 174.5-52 chr8 110327718 110327982 + 1 NA Intergenic Intergenic -352079 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 121.167-44 chr2 163775317 163775519 + 1 NA Intergenic Intergenic -39410 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 189.167-41 chr6 143191118 143191909 + 1 NA TTS (NM_001286588) TTS (NM_001286588) 26731 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 267.667-6 chr12 87185707 87186109 + 1 NA Intergenic Intergenic -144831 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 178.333-28 chr2 198856213 198856420 + 1 NA Intergenic L1PA16|LINE|L1 -481219 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 117.833-65 chr6 36423098 36423317 + 1 NA intron (NM_152990, intron 3 of 4) intron (NM_152990, intron 3 of 4) -19560 NM_001286580 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 131.5-2 chr1 117085363 117085576 + 1 NA intron (NM_003594, intron 11 of 22) AluSz|SINE|Alu -9174 NR_030640 100126331 NR_030640 ENSG00000215930 MIR942 MIRN942|hsa-mir-942|mir-942 microRNA 942 ncRNA 171.5-3 chr1 233937364 233937608 + 1 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) 32810 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 223.5-24 chr5 74384966 74385360 + 1 NA intron (NR_126354, intron 2 of 2) intron (NR_126354, intron 2 of 2) 62677 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 157.667-41 chr20 46372846 46373042 + 1 NA intron (NM_133171, intron 16 of 21) intron (NM_133171, intron 16 of 21) -8486 NM_001281458 51006 Hs.593344 NM_015945 ENSG00000080189 SLC35C2 BA394O2.1|C20orf5|CGI-15|OVCOV1 solute carrier family 35 member C2 protein-coding 146.5-53 chr3 29753437 29753692 + 1 NA intron (NM_001003792, intron 5 of 13) ERV24_Prim-int|LTR|ERV1 180592 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 229.333-17 chr2 152269741 152270039 + 1 NA Intergenic L1M4c|LINE|L1 -65284 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 227.667-3 chr1 233204453 233204870 + 1 NA intron (NM_014801, intron 13 of 33) intron (NM_014801, intron 13 of 33) 91064 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 171.833-45 chr8 74825600 74825907 + 1 NA intron (NM_015886, intron 2 of 5) intron (NM_015886, intron 2 of 5) 1219 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 143.5-27 chr15 91059889 91060066 + 1 NA Intergenic Tigger15a|DNA|TcMar-Tigger 37355 NR_110104 101926911 Hs.459366 NR_110104 ENSG00000214432 VPS33B-DT - VPS33B divergent transcript ncRNA 127.833-66 chr6 53071562 53071978 + 1 NA intron (NM_033481, intron 2 of 12) L1ME4a|LINE|L1 797 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 163.667-17 chr12 33249836 33250062 + 1 NA Intergenic AluJo|SINE|Alu 189870 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 325.333-3 chr12 12231798 12232368 + 1 NA intron (NM_002336, intron 2 of 22).2 L1ME2|LINE|L1 34961 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 167.833-57 chr8 115406029 115406420 + 1 NA Intergenic Intergenic 261789 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 227.167-3 chr1 180292807 180293354 + 1 NA intron (NM_032360, intron 7 of 7) L1ME1|LINE|L1 -18399 NR_037642 100527964 Hs.496545 NR_037642 ENSG00000230124 LHX4-AS1 - LHX4 antisense RNA 1 ncRNA 231.667-23 chr21 33611613 33612028 + 1 NA intron (NM_145858, intron 6 of 12) L1ME3E|LINE|L1 -23136 NM_017613 29980 Hs.436341 NM_017613 ENSG00000159147 DONSON B17|C21orf60|MIMIS|MISSLA downstream neighbor of SON protein-coding 136.5-79 chr6 7298957 7299196 + 1 NA intron (NR_120448, intron 4 of 6) FLAM_A|SINE|Alu 14123 NR_120448 6745 Hs.114033 NM_003144 ENSG00000124783 SSR1 TRAPA signal sequence receptor subunit 1 protein-coding 272.333-19 chr5 147700209 147700516 + 1 NA intron (NM_001270934, intron 1 of 20) L1MEd|LINE|L1 82366 NM_001282282 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 342.5-8 chr21 27457328 27457809 + 1 NA Intergenic Intergenic -264811 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 194.333-10 chr14 30764292 30764507 + 1 NA Intergenic L1ME1|LINE|L1 -110136 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 459.833-2 chrX 55209425 55210239 + 1 NA Intergenic L1MC2|LINE|L1 -10514 NM_001013435 90737 Hs.668491 NM_130467 ENSG00000158639 PAGE5 CT16|CT16.1|CT16.2|GAGEE1|PAGE-5 PAGE family member 5 protein-coding 118.833-37 chr2 86209779 86209897 + 1 NA intron (NM_016622, intron 3 of 3) AluJb|SINE|Alu 10381 NM_016622 51318 Hs.433439 NM_016622 ENSG00000132313 MRPL35 L35mt|MRP-L35 mitochondrial ribosomal protein L35 protein-coding 243.667-19 chr20 57905717 57906023 + 1 NA Intergenic LTR37B|LTR|ERV1 -98034 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 157.5-46 chr4 55923288 55923522 + 1 NA Intergenic MLT2B2|LTR|ERVL -25540 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 222.667-24 chr20 51712785 51713201 + 1 NA exon (NM_006045, exon 4 of 28) exon (NM_006045, exon 4 of 28) 55397 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 135.833-60 chr5 129430563 129430777 + 1 NA Intergenic Intergenic -29628 NM_133638 171019 Hs.23751 NM_133638 ENSG00000145808 ADAMTS19 - ADAM metallopeptidase with thrombospondin type 1 motif 19 protein-coding 128.167-46 chr3 2300022 2300190 + 1 NA intron (NM_001206955, intron 1 of 23) intron (NM_001206955, intron 1 of 23) 61277 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 246.333-12 chr17 35410724 35411153 + 1 NA TTS (NM_001289009) TTS (NM_001289009) 21562 NM_018042 55106 Hs.663548 NM_018042 ENSG00000172123 SLFN12 SLFN3 schlafen family member 12 protein-coding 150.5-69 chr6 49286928 49287097 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 176241 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 191.667-19 chr2 32169649 32169980 + 1 NA intron (NM_001330479, intron 1 of 13) Helitron3Na_Mam|RC|Helitron 3950 NM_001330477 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 366.667-4 chr4 39680760 39681387 + 1 NA Intergenic AluJo|SINE|Alu -17063 NM_001312646 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 116.167-60 chr5 22414453 22414575 + 1 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -200664 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 219.833-12 chr2 225981263 225981744 + 1 NA Intergenic L1MB7|LINE|L1 -161291 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 141.667-98 chr6 149023448 149023634 + 1 NA intron (NM_005715, intron 7 of 7) MLT1F|LTR|ERVL-MaLR 9120 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 143.333-75 chr5 150982068 150982382 + 1 NA Intergenic L1M4a2|LINE|L1 -35641 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 214.5-39 chr8 30430752 30431073 + 1 NA intron (NM_001008710, intron 1 of 8) L2a|LINE|L2 -45511 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 302.333-11 chr8 111737726 111738395 + 1 NA Intergenic Intergenic 361421 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 178.167-25 chr2 155106282 155106815 + 1 NA Intergenic L1PA15|LINE|L1 407853 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 164.333-21 chr13 100713958 100714389 + 1 NA intron (NR_047687, intron 1 of 7) intron (NR_047687, intron 1 of 7) 5848 NR_047687 100885778 Hs.602949 NR_047687 ENSG00000233009 NALCN-AS1 - NALCN antisense RNA 1 ncRNA 278.667-11 chr2 192304058 192304614 + 1 NA Intergenic Intergenic -109403 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 237.333-22 chr2 206634242 206634609 + 1 NA Intergenic Intergenic -9802 NM_001102659 200726 NM_001102659 ENSG00000235118 FAM237A - family with sequence similarity 237 member A protein-coding 172.5-40 chr4 5712469 5712767 + 1 NA intron (NM_001306090, intron 1 of 20) intron (NM_001306090, intron 1 of 20) 1417 NM_001306092 2121 Hs.646899 NM_014556 ENSG00000072840 EVC DWF-1|EVC1|EVCL EvC ciliary complex subunit 1 protein-coding 188.667-45 chr5 53292161 53292577 + 1 NA Intergenic Intergenic 182527 NR_104654 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 126.333-49 chr18 1248507 1248655 + 1 NA Intergenic MSTB1|LTR|ERVL-MaLR 111048 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 177.833-7 chr14 68448749 68449000 + 1 NA intron (NM_133509, intron 9 of 10) intron (NM_133509, intron 9 of 10) 179913 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 124.333-13 chr10 73291490 73291641 + 1 NA intron (NM_001367801, intron 19 of 27) intron (NM_001367801, intron 19 of 27) 38824 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 135.5-30 chr14 60983349 60983565 + 1 NA intron (NR_033344, intron 2 of 16) AluJb|SINE|Alu -1767 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 175.167-14 chr11 100325939 100326292 + 1 NA intron (NM_001243270, intron 20 of 23) L1M6|LINE|L1 -361173 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 190.5-32 chr2 86409782 86410276 + 1 NA Intergenic (CAAA)n|Simple_repeat|Simple_repeat -31342 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 155.667-62 chr5 107483936 107484134 + 1 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 186902 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 258.333-13 chr14 84531542 84531871 + 1 NA Intergenic Intergenic -740226 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 123.167-80 chr5 41040502 41040753 + 1 NA intron (NM_173489, intron 19 of 41) Tigger15a|DNA|TcMar-Tigger 30715 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 182.833-49 chr6 33482214 33482697 + 1 NA Intergenic L1MB4|LINE|L1 27879 NM_152735 221504 Hs.591805 NM_152735 ENSG00000213588 ZBTB9 ZNF919 zinc finger and BTB domain containing 9 protein-coding 204.667-49 chr9 35428246 35428613 + 1 NA intron (NR_003582, intron 2 of 10) L1MB7|LINE|L1 21674 NR_003581 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 281.333-5 chr17 47279934 47280329 + 1 NA intron (NM_000212, intron 2 of 14) intron (NM_000212, intron 2 of 14) 26289 NM_000212 3690 Hs.218040 NM_000212 ENSG00000259207 ITGB3 BDPLT16|BDPLT2|CD61|GP3A|GPIIIa|GT integrin subunit beta 3 protein-coding 123.667-37 chr15 87938756 87939009 + 1 NA intron (NM_001320135, intron 13 of 15) intron (NM_001320135, intron 13 of 15) 7386 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 370.5-4 chr3 109222085 109222514 + 1 NA Intergenic Intergenic 44134 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 300.167-2 chr11 37147298 37148011 + 1 NA Intergenic L2|LINE|L2 -549375 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 135.833-62 chr5 161412831 161413067 + 1 NA intron (NM_000813, intron 5 of 9) AluJb|SINE|Alu 135175 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 129.833-48 chr4 36294496 36294743 + 1 NA intron (NR_160267, intron 4 of 9) intron (NR_160267, intron 4 of 9) 13003 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 307.5-3 chr14 47195280 47195674 + 1 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 147769 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 221.833-27 chr9 30860457 30860903 + 1 NA Intergenic L2c|LINE|L2 -452226 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 149.667-50 chr3 64010536 64010837 + 1 NA exon (NM_001271781, exon 8 of 8) exon (NM_001271781, exon 8 of 8) 6664 NR_038286 100507062 Hs.152536 NR_038286 ENSG00000239653 PSMD6-AS2 - PSMD6 antisense RNA 2 ncRNA 147.667-77 chr9 15360287 15360541 + 1 NA Intergenic L1ME4b|LINE|L1 -53054 NM_152574 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 350.833-5 chr8 82198094 82198542 + 1 NA Intergenic MSTD-int|LTR|ERVL-MaLR -356032 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 158.667-97 chr9 126978877 126979184 + 1 NA intron (NM_001190729, intron 4 of 17) intron (NM_001190729, intron 4 of 17) 16805 NM_001190728 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 232.167-4 chr1 195083808 195084359 + 1 NA Intergenic Intergenic 1004632 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 129.5-4 chr1 87363188 87363378 + 1 NA intron (NR_038324, intron 1 of 3) intron (NR_038324, intron 1 of 3) 8372 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 308.833-4 chr8 113983307 113983644 + 1 NA Intergenic L1PA16|LINE|L1 -546536 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 127.5-12 chr10 58632219 58632353 + 1 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -82729 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 149.167-2 chr1 116306857 116307013 + 1 NA Intergenic Intergenic -66309 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 170.333-73 chr8 112564715 112565021 + 1 NA intron (NM_001363185, intron 22 of 66) L1M5|LINE|L1 -78625 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 182.333-66 chr7 144051708 144052016 + 1 NA TTS (NM_012365) TTS (NM_012365) 1460 NM_012365 393046 Hs.553793 NM_012365 ENSG00000221836 OR2A5 OR2A11P|OR2A26|OR2A8|OR7-138|OR7-141 olfactory receptor family 2 subfamily A member 5 protein-coding 250.333-3 chr10 9152189 9152655 + 1 NA Intergenic L1MA5A|LINE|L1 -123191 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 132.333-12 chr10 55091641 55091899 + 1 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -290479 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 151.833-42 chr4 88777125 88777395 + 1 NA intron (NM_001015045, intron 5 of 17) intron (NM_001015045, intron 5 of 17) 46101 NM_001265578 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 217.333-33 chr6 73637214 73637622 + 1 NA intron (NM_012434, intron 4 of 10) intron (NM_012434, intron 4 of 10) 16574 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 167.667-56 chr3 25112896 25113223 + 1 NA intron (NM_001290216, intron 3 of 10) intron (NM_001290216, intron 3 of 10) -227743 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 230.667-28 chr6 152059549 152059878 + 1 NA intron (NM_001122741, intron 6 of 8) L1ME4b|LINE|L1 108574 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 249.333-17 chr4 31846002 31846355 + 1 NA Intergenic Intergenic -151201 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 256.333-20 chr5 11459046 11459316 + 1 NA intron (NM_001288715, intron 2 of 20) MIR|SINE|MIR 129736 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 225.333-5 chr11 114082794 114083279 + 1 NA intron (NM_006006, intron 2 of 6) CpG 19825 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 221.167-11 chr15 66480701 66481002 + 1 NA intron (NM_002755, intron 5 of 10) intron (NM_002755, intron 5 of 10) 16183 NR_039737 100616149 NR_039737 ENSG00000266589 MIR4512 - microRNA 4512 ncRNA 223.5-19 chr3 124428784 124429094 + 1 NA intron (NM_001024660, intron 15 of 59) intron (NM_001024660, intron 15 of 59) 54607 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 163.667-71 chr8 125296705 125296927 + 1 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -133542 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 185.5-16 chr16 55572987 55573519 + 1 NA intron (NM_017839, intron 11 of 13) Charlie4z|DNA|hAT-Charlie 6569 NM_032330 84290 Hs.660027 NM_032330 ENSG00000256812 CAPNS2 CSS2 calpain small subunit 2 protein-coding 226.667-17 chr2 139854674 139855010 + 1 NA Intergenic Intergenic 731843 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 320.333-7 chr7 23376761 23377496 + 1 NA intron (NM_006547, intron 3 of 14) L1MB7|LINE|L1 -19318 NR_145734 109616981 NR_145734 ENSG00000212264 SNORD65C - small nucleolar RNA, C/D box 65C snoRNA 133.667-39 chr16 52733080 52733541 + 1 NA Intergenic AluSx1|SINE|Alu -126335 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 292.167-12 chr8 138765397 138765938 + 1 NA intron (NM_152888, intron 16 of 64) LTR18B|LTR|ERVL 148374 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 276.333-4 chr10 25351594 25352138 + 1 NA intron (NM_020752, intron 2 of 10) L1PA11|LINE|L1 -175590 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 244.833-18 chr8 117037009 117037332 + 1 NA intron (NM_001172813, intron 2 of 10) intron (NM_001172813, intron 2 of 10) 86195 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 299.667-5 chr17 32324105 32324699 + 1 NA 3' UTR (NM_001330181, exon 8 of 8) 3' UTR (NM_001330181, exon 8 of 8) 17771 NM_022344 64149 Hs.655257 NM_022344 ENSG00000108666 C17orf75 NJMU-R1|SRI2 chromosome 17 open reading frame 75 protein-coding 191.167-16 chr2 201724503 201725023 + 1 NA intron (NM_020919, intron 20 of 33) intron (NM_020919, intron 20 of 33) -26119 NM_033066 58538 Hs.63085 NM_033066 ENSG00000082126 MPP4 ALS2CR5|DLG6 membrane palmitoylated protein 4 protein-coding 236.667-36 chr7 49609112 49609371 + 1 NA Intergenic L1PREC2|LINE|L1 -164397 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 118.333-15 chr11 34601655 34601893 + 1 NA Intergenic MIR|SINE|MIR -19319 NM_001206615 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 125.5-23 chr14 71949552 71949815 + 1 NA intron (NM_001370288, intron 1 of 16) L1ME3A|LINE|L1 16156 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 236.667-14 chr17 68305107 68305468 + 1 NA intron (NM_001352902, intron 1 of 12) intron (NM_001352902, intron 1 of 12) 13152 NM_001352902 22901 Hs.437249 NM_014960 ENSG00000141337 ARSG USH4 arylsulfatase G protein-coding 168.667-77 chr8 51763001 51763187 + 1 NA intron (NM_144651, intron 1 of 22) L1MB7|LINE|L1 46351 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 326.167-2 chr10 27198288 27198691 + 1 NA intron (NM_001271512, intron 11 of 11) intron (NM_001271512, intron 11 of 11) 41997 NM_001301252 91452 Hs.530597 NM_145698 ENSG00000107897 ACBD5 - acyl-CoA binding domain containing 5 protein-coding 200.333-3 chr1 98580512 98580783 + 1 NA Intergenic L1M5|LINE|L1 -81074 NM_015976 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 184.333-67 chr8 120146455 120146714 + 1 NA intron (NM_021110, intron 1 of 47) MER53|DNA|hAT 21482 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 245.5-22 chr6 55360657 55361089 + 1 NA intron (NM_207410, intron 6 of 8) intron (NM_207410, intron 6 of 8) 33404 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 166.833-35 chr6 13502162 13502328 + 1 NA Intergenic AluSz|SINE|Alu -14608 NM_001242629 54438 Hs.484686 NM_018988 ENSG00000145990 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 168.167-59 chr8 129530315 129530598 + 1 NA intron (NR_130917, intron 1 of 3) L2c|LINE|L2 44562 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 201.167-16 chr20 45249755 45250124 + 1 NA Intergenic L1M2|LINE|L1 4625 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 114.333-29 chr12 66598902 66599052 + 1 NA intron (NM_001366724, intron 1 of 23) intron (NM_001366724, intron 1 of 23) 80099 NM_021150 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 272.667-3 chr14 65416059 65416623 + 1 NA intron (NR_038170, intron 1 of 10) FLAM_A|SINE|Alu 3611 NR_038170 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 275.167-2 chr10 32878354 32878709 + 1 NA intron (NM_001321115, intron 43 of 43) intron (NM_001321115, intron 43 of 43) 22941 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 271.333-8 chr18 6530699 6531123 + 1 NA intron (NR_120518, intron 2 of 5) intron (NR_120518, intron 2 of 5) 19495 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 256.167-12 chr22 25859010 25859466 + 1 NA intron (NM_001318245, intron 21 of 43) intron (NM_001318245, intron 21 of 43) 117050 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 246.667-2 chr1 110805536 110805923 + 1 NA Intergenic L1MA9|LINE|L1 -65470 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 234.5-22 chr3 86551586 86551884 + 1 NA Intergenic Intergenic 69792 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 242.667-33 chr9 32723727 32723994 + 1 NA Intergenic Intergenic -59680 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 186.667-40 chr2 139654231 139654466 + 1 NA Intergenic L1M5|LINE|L1 757024 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 183.5-38 chr20 45642164 45642466 + 1 NA Intergenic L1MA8|LINE|L1 -11031 NM_147198 259240 Hs.249828 NM_147198 ENSG00000180205 WFDC9 WAP9|dJ688G8.2 WAP four-disulfide core domain 9 protein-coding 206.333-11 chr18 3542692 3542994 + 1 NA intron (NM_001242762, intron 6 of 9) intron (NM_001242762, intron 6 of 9) -51271 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 174.5-17 chr16 52464482 52464756 + 1 NA intron (NM_001080430, intron 2 of 6) intron (NM_001080430, intron 2 of 6) 82524 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 182.667-40 chr3 9626331 9626697 + 1 NA Intergenic MER66B|LTR|ERV1 -22991 NM_001077526 64419 Hs.475382 NM_022485 ENSG00000163719 MTMR14 C3orf29 myotubularin related protein 14 protein-coding 245.167-17 chr8 112297791 112298406 + 1 NA intron (NM_001363185, intron 49 of 66) L1ME2z|LINE|L1 -345395 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 192.833-27 chr3 179194621 179194962 + 1 NA intron (NM_006218, intron 1 of 20) L2c|LINE|L2 46434 NM_006218 5290 Hs.553498 NM_006218 ENSG00000121879 PIK3CA CLAPO|CLOVE|CWS5|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha protein-coding 192.5-29 chr22 26182473 26182705 + 1 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 13115 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 253.833-2 chr14 45574855 45575460 + 1 NA Intergenic Intergenic 140445 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 165.333-14 chr12 29693894 29694169 + 1 NA intron (NM_001367875, intron 5 of 19) intron (NM_001367875, intron 5 of 19) 89911 NM_001193451 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 238.5-16 chr20 50798604 50799031 + 1 NA intron (NM_017843, intron 1 of 5) MIRb|SINE|MIR 3923 NM_198799 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 161.167-13 chr13 26394041 26394277 + 1 NA intron (NM_001318368, intron 7 of 12) intron (NM_001318368, intron 7 of 12) 140030 NM_001346501 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 226.5-34 chr8 63343895 63344260 + 1 NA Intergenic L1ME1|LINE|L1 -121772 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 151.333-55 chr21 26153086 26153325 + 1 NA intron (NM_001136131, intron 1 of 15) L1PB3|LINE|L1 -12815 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 263.833-11 chr5 41522730 41523343 + 1 NA Intergenic Intergenic -12435 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 133.5-63 chr5 179214482 179214689 + 1 NA intron (NM_014244, intron 3 of 21) L1M5|LINE|L1 130876 NM_021599 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 244.333-20 chr4 78818859 78819363 + 1 NA intron (NM_017593, intron 1 of 13) intron (NM_017593, intron 1 of 13) 42733 NM_198892 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 241.667-7 chr11 107802463 107802817 + 1 NA intron (NM_017515, intron 7 of 7) intron (NM_017515, intron 7 of 7) 56147 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 207.333-22 chr18 2688823 2689083 + 1 NA intron (NM_015295, intron 7 of 47) intron (NM_015295, intron 7 of 47) 33066 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 177.5-19 chr12 14558063 14558310 + 1 NA intron (NM_024829, intron 1 of 10) intron (NM_024829, intron 1 of 10) -9546 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 113.833-78 chr6 74241108 74241228 + 1 NA intron (NR_110856, intron 1 of 3) L1MA1|LINE|L1 171717 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 140.5-83 chr9 115113026 115113383 + 1 NA intron (NM_002160, intron 1 of 27) intron (NM_002160, intron 1 of 27) 4953 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 150.667-71 chr4 77579771 77579954 + 1 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 68109 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 144.667-38 chr14 48652634 48652897 + 1 NA Intergenic Intergenic -857751 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 181.667-60 chr7 21112586 21112841 + 1 NA Intergenic Intergenic 277282 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 249.833-13 chr7 113587773 113588279 + 1 NA Intergenic L1MC1|LINE|L1 330983 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 120.333-16 chr10 23685636 23685977 + 1 NA Intergenic MLT1A1|LTR|ERVL-MaLR -8921 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 174.667-19 chr14 53413534 53413855 + 1 NA Intergenic Intergenic 260340 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 177.333-67 chr8 122509646 122509849 + 1 NA intron (NR_131202, intron 2 of 3) L2c|LINE|L2 58897 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 183.167-55 chr7 88833450 88833802 + 1 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -37889 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 348.5-3 chr3 113586464 113587093 + 1 NA intron (NR_136285, intron 7 of 20) L1MC4|LINE|L1 -8098 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 278.333-16 chr7 71763131 71763708 + 1 NA Intergenic L1MC1|LINE|L1 -455649 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 133.333-45 chr17 65103290 65103546 + 1 NA intron (NR_110801, intron 2 of 2) intron (NR_110801, intron 2 of 2) 2606 NR_110801 100507002 Hs.729924 NR_110801 LOC100507002 - uncharacterized LOC100507002 ncRNA 212.833-8 chr18 40126368 40126845 + 1 NA Intergenic Intergenic 60320 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 181.5-56 chr7 77577937 77578155 + 1 NA intron (NM_001131009, intron 2 of 16) intron (NM_001131009, intron 2 of 16) 40003 NM_001131009 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 163.5-19 chr13 29419767 29420023 + 1 NA intron (NM_001033602, intron 6 of 13) ERVL-B4-int|LTR|ERVL -8765 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 134.333-39 chr15 34719591 34719849 + 1 NA Intergenic Intergenic 35278 NM_020660 57369 Hs.283816 NM_020660 ENSG00000159248 GJD2 CX36|GJA9 gap junction protein delta 2 protein-coding 132.667-5 chr1 187189685 187190069 + 1 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 97035 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 115.5-93 chr7 40836175 40836437 + 1 NA intron (NM_024728, intron 14 of 14) L1MD2|LINE|L1 143633 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 274.667-3 chr11 101183991 101184316 + 1 NA Intergenic Intergenic -54340 NM_000926 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 244.5-18 chr2 185267163 185267514 + 1 NA Intergenic L1MEf|LINE|L1 -100266 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 241.5-11 chr2 43466446 43466736 + 1 NA intron (NM_001083953, intron 26 of 37) L2c|LINE|L2 129383 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 231.167-9 chr18 6955306 6955566 + 1 NA exon (NM_005559, exon 57 of 63) exon (NM_005559, exon 57 of 63) 759 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 256.667-9 chr13 48837484 48837895 + 1 NA Intergenic Intergenic -138223 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 272.5-20 chr8 57613578 57613913 + 1 NA Intergenic L1MA3|LINE|L1 -132404 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 132.667-84 chr6 127290165 127290547 + 1 NA intron (NM_001002030, intron 5 of 5) intron (NM_001002030, intron 5 of 5) 23518 NM_001242850 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 129.5-51 chr2 150421120 150421305 + 1 NA Intergenic Intergenic 66483 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 265.667-11 chr20 44000599 44001127 + 1 NA intron (NM_001098797, intron 2 of 8) L2-3_Crp|LINE|L2 54967 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 129.333-68 chr4 115877423 115877588 + 1 NA Intergenic Intergenic -422220 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 294.333-7 chr2 46794906 46795500 + 1 NA Intergenic L1ME2|LINE|L1 -21465 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 258.333-31 chr5 171631201 171631490 + 1 NA Intergenic Intergenic -154527 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 130.5-39 chr19 36842477 36842761 + 1 NA intron (NM_001242800, intron 1 of 4) L1MEg1|LINE|L1 -4232 NM_206894 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 115.333-16 chr12 1760077 1760194 + 1 NA intron (NM_024551, intron 2 of 7).2 intron (NM_024551, intron 2 of 7).2 -60132 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 142.833-29 chr17 53323526 53323745 + 1 NA Intergenic Intergenic 338130 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 199.5-24 chr3 101055804 101056169 + 1 NA Intergenic L1PBa|LINE|L1 -62496 NM_001349331 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 172.333-28 chr17 49560709 49561102 + 1 NA intron (NR_103773, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 13159 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 193.833-39 chr8 91416522 91416741 + 1 NA Intergenic Intergenic 167312 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 156.5-82 chr8 27002594 27002830 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger 46251 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 234.667-36 chr8 125479433 125479821 + 1 NA Intergenic Intergenic 47418 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 215.167-24 chr6 55269768 55270239 + 1 NA intron (NM_001526, intron 5 of 7) intron (NM_001526, intron 5 of 7) -57466 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 156.5-36 chr16 57980114 57980408 + 1 NA intron (NM_199456, intron 2 of 7) MER49|LTR|ERV1 3826 NM_199046 374739 Hs.132976 NM_199046 ENSG00000159648 TEPP - testis, prostate and placenta expressed protein-coding 177.667-54 chr4 85337478 85337772 + 1 NA Intergenic Intergenic -137525 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 123.333-4 chr1 87883221 87883357 + 1 NA Intergenic MIRc|SINE|MIR -511634 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 200.5-33 chr4 6464067 6464393 + 1 NA intron (NM_001206994, intron 2 of 9) intron (NM_001206994, intron 2 of 9) 8384 NM_020416 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 172.5-22 chr14 85616867 85617095 + 1 NA intron (NM_001346143, intron 1 of 1) intron (NM_001346143, intron 1 of 1) 83632 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 274.5-9 chr22 40179524 40179996 + 1 NA intron (NM_015088, intron 1 of 20) intron (NM_015088, intron 1 of 20) 1835 NM_001162501 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 237.5-2 chr10 51177319 51177618 + 1 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 102981 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 192.5-59 chr9 26202132 26202389 + 1 NA Intergenic Intergenic 135585 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 180.333-44 chr3 172283276 172283542 + 1 NA intron (NM_001135095, intron 6 of 25) intron (NM_001135095, intron 6 of 25) 165047 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 204.5-25 chr4 47000427 47000726 + 1 NA Intergenic MLT1H1|LTR|ERVL-MaLR -6995 NM_000809 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 634.501 chr1 105830521 105831916 + 1 NA Intergenic Intergenic 197035 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 176.333-32 chr17 59810803 59811058 + 1 NA intron (NM_001329400, intron 6 of 9) intron (NM_001329400, intron 6 of 9) -30336 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 194.333-19 chr18 7708202 7708577 + 1 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 141073 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 281.667-13 chr5 159653359 159653670 + 1 NA Intergenic MLT1J2|LTR|ERVL-MaLR -187238 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 196.667-30 chr2 214763446 214763841 + 1 NA intron (NM_001282548, intron 1 of 5) intron (NM_001282548, intron 1 of 5) 46040 NR_104215 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 118.667-6 chr1 105797959 105798218 + 1 NA Intergenic L2a|LINE|L2 -179153 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 175.5-35 chr3 22820243 22820477 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR 382218 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 180.167-61 chr9 73091085 73091420 + 1 NA Intergenic Intergenic -60613 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 223.333-36 chr7 21071777 21072127 + 1 NA Intergenic Intergenic 236521 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 251.5-19 chr6 81494293 81494894 + 1 NA Intergenic L2|LINE|L2 258088 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 278.667-2 chr10 85651665 85652229 + 1 NA intron (NM_017551, intron 12 of 15) intron (NM_017551, intron 12 of 15) 74216 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 386.667 chr12 125632110 125632783 + 1 NA intron (NM_001286219, intron 1 of 4) L1MA2|LINE|L1 9994 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 176.333-34 chr2 99139488 99139711 + 1 NA intron (NM_001349013, intron 1 of 16) intron (NM_001349013, intron 1 of 16) 1581 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 203.167-8 chr11 44357762 44358125 + 1 NA Intergenic Intergenic -47804 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 153.667-33 chr18 79303316 79303572 + 1 NA intron (NR_148360, intron 14 of 31) intron (NR_148360, intron 14 of 31) -92486 NM_006162 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 127.333-91 chr5 73805477 73805710 + 1 NA intron (NM_001177693, intron 9 of 35) L1MC3|LINE|L1 -7953 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 120.5-67 chr4 71557282 71557475 + 1 NA intron (NM_003759, intron 18 of 22) MIR1_Amn|SINE|MIR 218325 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 185.333-30 chr2 76791610 76791840 + 1 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -194240 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 148.333-27 chr12 75434907 75435121 + 1 NA Intergenic L1PA15-16|LINE|L1 43925 NM_001270396 144321 Hs.406728 NM_152436 ENSG00000180481 GLIPR1L2 - GLIPR1 like 2 protein-coding 258.333-12 chr13 81498069 81498412 + 1 NA Intergenic L1MA4|LINE|L1 -271257 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 256.5-39 chrX 10702979 10703361 + 1 NA intron (NM_033290, intron 1 of 9) intron (NM_033290, intron 1 of 9) -25431 NM_001098624 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 208.333-16 chr16 68558246 68558528 + 1 NA non-coding (NR_130978, exon 4 of 5) non-coding (NR_130978, exon 4 of 5) 19096 NM_001305207 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 314.5 chr1 173922120 173922556 + 1 NA Intergenic L1MC4a|LINE|L1 -4960 NM_000488 462 Hs.75599 NM_000488 ENSG00000117601 SERPINC1 AT3|AT3D|ATIII|ATIII-R2|ATIII-T1|ATIII-T2|THPH7 serpin family C member 1 protein-coding 207.667-22 chr2 152467070 152467373 + 1 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 132047 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 297.333-3 chr10 116186780 116187409 + 1 NA intron (NM_145793, intron 3 of 8) intron (NM_145793, intron 3 of 8) 7695 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 256.167-8 chr2 78977190 78977795 + 1 NA Intergenic MIRb|SINE|MIR -48210 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 291.833-5 chr18 51176161 51176570 + 1 NA exon (NM_016626, exon 2 of 2) exon (NM_016626, exon 2 of 2) 21316 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 135.167-48 chr2 89828472 89828727 + 1 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -190692 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 213.5-31 chr5 77665572 77665953 + 1 NA Intergenic Intergenic -27065 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 151.167-20 chr17 32436709 32437152 + 1 NA Intergenic AluSq|SINE|Alu -7580 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 180.5-10 chr10 81032535 81032794 + 1 NA Intergenic L1PA16|LINE|L1 382867 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 265.167-17 chr9 36810338 36810798 + 1 NA Intergenic L1ME2|LINE|L1 13031 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 146.333-58 chr22 20945492 20945704 + 1 NA intron (NR_156180, intron 2 of 3) intron (NR_156180, intron 2 of 3) -11494 NR_110537 101928891 Hs.648264 NR_110537 ENSG00000237476 LINC01637 - long intergenic non-protein coding RNA 1637 ncRNA 121.333-66 chr3 104964729 104964930 + 1 NA Intergenic L1ME3B|LINE|L1 -401884 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 355.5-9 chrX 16136215 16136653 + 1 NA intron (NM_005314, intron 1 of 2) intron (NM_005314, intron 1 of 2) 12869 NM_005314 2925 Hs.567282 NM_005314 ENSG00000126010 GRPR BB2|BB2R gastrin releasing peptide receptor protein-coding 252.667-23 chr6 153764902 153765273 + 1 NA Intergenic Intergenic -245409 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 192.667-4 chr1 176884793 176885264 + 1 NA intron (NM_207108, intron 18 of 21) intron (NM_207108, intron 18 of 21) 144417 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 368.167 chr1 240766606 240767028 + 1 NA Intergenic Intergenic -154662 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 208.333-43 chr9 14642346 14642730 + 1 NA intron (NR_148717, intron 8 of 11) MLT1B|LTR|ERVL-MaLR 50894 NR_148718 340481 Hs.649522 NM_178566 ENSG00000175893 ZDHHC21 DHHC-21|DHHC21|DNZ1|HSPC097 zinc finger DHHC-type containing 21 protein-coding 166.667-33 chr22 37336570 37336903 + 1 NA Intergenic Intergenic 18103 NR_110515 100506271 Hs.220558 NR_110515 ENSG00000237862 LOC100506271 - uncharacterized LOC100506271 ncRNA 116.333-95 chr7 13634946 13635089 + 1 NA Intergenic L1MD3|LINE|L1 351497 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 160.333-69 chrX 8043537 8043761 + 1 NA Intergenic Intergenic -83316 NR_030380 723779 NR_030380 ENSG00000207628 MIR651 MIRN651|hsa-mir-651|mir-651 microRNA 651 ncRNA 207.5-32 chr6 132613883 132614240 + 1 NA Intergenic Intergenic 4032 NM_014626 9287 Hs.272382 NM_014626 ENSG00000146378 TAAR2 GPR58|taR-2 trace amine associated receptor 2 (gene/pseudogene) protein-coding 159.5-22 chr2 33402517 33402730 + 1 NA Intergenic Intergenic -15893 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 192.333-59 chr9 93427290 93427728 + 1 NA Intergenic L2a|LINE|L2 24099 NM_001322224 158293 Hs.350364 NM_198841 ENSG00000188938 FAM120AOS C9orf10OS family with sequence similarity 120A opposite strand protein-coding 241.833-16 chr6 55184823 55185106 + 1 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) 78504 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 247.667-13 chr2 116113069 116113399 + 1 NA Intergenic Intergenic 769419 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 141.5-36 chr17 65158559 65158776 + 1 NA intron (NM_003835, intron 3 of 18) intron (NM_003835, intron 3 of 18) 21297 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 189.5-13 chr13 94214674 94214949 + 1 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) -26820 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 233.167-12 chr15 93723168 93723685 + 1 NA Intergenic L1ME3D|LINE|L1 -133134 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 163.333-56 chr4 47695899 47696213 + 1 NA intron (NM_006587, intron 5 of 21) MamGypsy2-I|LTR|Gypsy 43387 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 179.333-43 chr4 105207573 105207928 + 1 NA intron (NM_001127208, intron 2 of 10) intron (NM_001127208, intron 2 of 10) 61065 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 213.333-14 chr14 52869996 52870236 + 1 NA intron (NM_006832, intron 10 of 14) Tigger3b|DNA|TcMar-Tigger -78509 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 126.667-61 chr4 32338006 32338372 + 1 NA Intergenic Intergenic -12849 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 143.5-59 chr3 147416411 147416590 + 1 NA 3' UTR (NM_003412, exon 3 of 3) 3' UTR (NM_003412, exon 3 of 3) -4827 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 231.333-2 chr1 104871898 104872276 + 1 NA Intergenic L1MC3|LINE|L1 746848 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 296.167-14 chr9 99060788 99061132 + 1 NA intron (NM_001855, intron 36 of 41) intron (NM_001855, intron 36 of 41) -44153 NM_001130916 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 147.333-99 chr9 94207623 94207798 + 1 NA intron (NR_160773, intron 1 of 2) L1MEg|LINE|L1 -3144 NR_046165 158257 Hs.652626 NR_046163 ENSG00000230262 LINC02603 MIRLET7DHG long intergenic non-protein coding RNA 2603 ncRNA 288.667 chr10 96173019 96173387 + 1 NA intron (NR_138482, intron 3 of 4) MER2|DNA|TcMar-Tigger 42581 NM_001330734 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 218.333-30 chr5 73813259 73813943 + 1 NA promoter-TSS (NM_001244364) promoter-TSS (NM_001244364) 55 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 283.667-4 chr10 100845657 100846296 + 1 NA Intergenic L1MC5a|LINE|L1 -66987 NM_018121 55719 Hs.447458 NM_018121 ENSG00000119906 SLF2 C10orf6|FAM178A SMC5-SMC6 complex localization factor 2 protein-coding 169.667-19 chr13 60176037 60176431 + 1 NA Intergenic Intergenic -12249 NM_001258369 81624 Hs.283127 NM_030932 ENSG00000139734 DIAPH3 AN|AUNA1|DIA2|DRF3|NSDAN|diap3|mDia2 diaphanous related formin 3 protein-coding 151.333-21 chr12 23648361 23648544 + 1 NA intron (NM_152989, intron 10 of 17) MLT1B|LTR|ERVL-MaLR -63866 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 305.667-12 chr5 60695671 60696113 + 1 NA intron (NM_001145208, intron 1 of 9) AluSc5|SINE|Alu 4274 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 260.667-21 chr6 51535475 51536051 + 1 NA Intergenic Intergenic -86107 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 168.5-17 chr14 28705604 28705870 + 1 NA Intergenic MER44A|DNA|TcMar-Tigger 59582 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 124.333-52 chr2 205058145 205058331 + 1 NA intron (NM_205863, intron 4 of 21) L1MB3|LINE|L1 512763 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 388.167-3 chr13 102394790 102395785 + 1 NA promoter-TSS (NR_036486) promoter-TSS (NR_036486) 709 NR_036487 283481 Hs.646604 NR_036487 ENSG00000272143 FGF14-AS2 - FGF14 antisense RNA 2 ncRNA 256.5-17 chr2 122730018 122730477 + 1 NA Intergenic L1M5|LINE|L1 343234 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 122.667-74 chr3 186279296 186279462 + 1 NA intron (NM_001346, intron 9 of 24) MIRb|SINE|MIR 82855 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 263.667-2 chr11 72753494 72753819 + 1 NA Intergenic Intergenic -1267 NM_001040118 116985 Hs.503165 NM_015242 ENSG00000186635 ARAP1 CENTD2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding 239.667-16 chr2 36775128 36775509 + 1 NA intron (NM_001177970, intron 9 of 13) intron (NM_001177970, intron 9 of 13) 78611 NM_001328661 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 272.667-9 chr3 94726182 94726629 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -211858 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 384.5-2 chr4 69766123 69766630 + 1 NA Intergenic Intergenic -5756 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 135.667-2 chr1 20821417 20821578 + 1 NA intron (NM_003760, intron 28 of 31) L1M4c|LINE|L1 -34809 NM_016287 50809 Hs.142442 NM_016287 ENSG00000127483 HP1BP3 HP1-BP74|HP1BP74 heterochromatin protein 1 binding protein 3 protein-coding 227.333-38 chr6 45369424 45369800 + 1 NA intron (NM_181356, intron 1 of 12) intron (NM_181356, intron 1 of 12) 7906 NR_146635 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 300.667-13 chr8 61600700 61601048 + 1 NA intron (NM_004318, intron 14 of 24) L1M2|LINE|L1 88937 NM_001164752 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 267.333-18 chr3 102506411 102506954 + 1 NA Intergenic THE1C|LTR|ERVL-MaLR 71667 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 298.333-12 chr8 75441915 75442528 + 1 NA intron (NM_001330561, intron 1 of 11) L1ME3D|LINE|L1 34572 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 136.333-82 chr6 65945287 65945499 + 1 NA Intergenic Intergenic 157514 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 134.5-18 chr10 110576840 110577018 + 1 NA intron (NM_005445, intron 4 of 28) intron (NM_005445, intron 4 of 28) 9238 NM_005445 9126 Hs.24485 NM_005445 ENSG00000108055 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 238.667-34 chr8 87254501 87255002 + 1 NA intron (NM_173538, intron 6 of 10) intron (NM_173538, intron 6 of 10) 388336 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 378.5-3 chr8 90530624 90531229 + 1 NA Intergenic MIR|SINE|MIR 75137 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 127.667-4 chr1 157326253 157326525 + 1 NA Intergenic MER4-int|LTR|ERV1 -187798 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 180.667-23 chr14 55136364 55136715 + 1 NA promoter-TSS (NR_003225) promoter-TSS (NR_003225) -444 NR_003225 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 159.667-101 chrX 116353850 116354160 + 1 NA Intergenic Intergenic -82601 NM_007231 11254 Hs.522109 NM_007231 ENSG00000268104 SLC6A14 BMIQ11 solute carrier family 6 member 14 protein-coding 229.5-13 chr2 13107636 13108054 + 1 NA Intergenic L1M5|LINE|L1 -100832 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 228.667-15 chr16 71528338 71528629 + 1 NA intron (NM_001166395, intron 1 of 1) intron (NM_001166395, intron 1 of 1) 2057 NM_001166395 10164 Hs.251383 NM_005769 ENSG00000140835 CHST4 GST3|GlcNAc6ST2|HECGLCNAC6ST|LSST carbohydrate sulfotransferase 4 protein-coding 233.167-27 chr4 129011824 129012355 + 1 NA intron (NM_144643, intron 5 of 20) L1PA13|LINE|L1 81450 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 272.667-2 chr14 55176488 55176909 + 1 NA intron (NM_001146015, intron 8 of 19) AluY|SINE|Alu 14887 NM_014750 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 213.167-21 chr5 14002169 14002638 + 1 NA Intergenic Intergenic -57923 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 153.333-28 chr17 50871708 50871993 + 1 NA Intergenic Intergenic -3872 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 168.167-6 chr10 43684703 43684967 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -35954 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 193.167-38 chr8 79818560 79819072 + 1 NA intron (NR_110954, intron 3 of 5) intron (NR_110954, intron 3 of 5) 50674 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 343.667-6 chr5 55894332 55895028 + 1 NA intron (NM_001297572, intron 6 of 10) L4_C_Mam|LINE|RTE-X 41358 NM_001242639 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 144.5-36 chr17 29730972 29731122 + 1 NA intron (NM_033389, intron 2 of 14) MIR1_Amn|SINE|MIR 30385 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 290.5 chr10 87509525 87510023 + 1 NA intron (NM_001178117, intron 2 of 2) L1ME3Cz|LINE|L1 1941 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 147.333-82 chr7 37971263 37971596 + 1 NA Intergenic Intergenic 50110 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 283.333-16 chr9 99935653 99936027 + 1 NA intron (NM_017919, intron 3 of 7) L2a|LINE|L2 29186 NM_017919 55014 Hs.704031 NM_017919 ENSG00000136874 STX17 - syntaxin 17 protein-coding 186.5-53 chr5 42882918 42883421 + 1 NA Intergenic L1M1|LINE|L1 -71093 NM_001093726 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 114.667-9 chr10 14967951 14968065 + 1 NA intron (NM_001080836, intron 2 of 2) intron (NM_001080836, intron 2 of 2) 8620 NR_147060 644890 Hs.257249 NM_001080836 ENSG00000197889 MEIG1 SPATA39|bA2K17.3 meiosis/spermiogenesis associated 1 protein-coding 219.5-39 chr7 8965146 8965517 + 1 NA Intergenic Intergenic 531722 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 236.667-39 chr8 109481841 109482172 + 1 NA intron (NM_177531, intron 56 of 77) intron (NM_177531, intron 56 of 77) -57694 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 118.667-116 chr8 125491440 125491571 + 1 NA Intergenic Intergenic 59296 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 149.5-56 chr6 106908304 106908584 + 1 NA Intergenic Intergenic 65595 NM_001291739 100133941 Hs.644105 NM_013230 ENSG00000272398 CD24 CD24A CD24 molecule protein-coding 202.167-36 chr8 89610907 89611174 + 1 NA Intergenic MamTip2|DNA|hAT-Tip100 146671 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 114.5-51 chr2 122324286 122324634 + 1 NA Intergenic L2c|LINE|L2 568809 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 281.667-7 chr13 90647711 90648037 + 1 NA Intergenic Intergenic 154586 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 202.667-5 chr10 19891262 19891726 + 1 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 75062 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 145.333-94 chr8 126386500 126386665 + 1 NA Intergenic AluSp|SINE|Alu 61087 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 170.667-63 chr6 65135579 65135982 + 1 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -165638 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 151.5-64 chr6 91630716 91630907 + 1 NA intron (NR_104154, intron 3 of 3) L2c|LINE|L2 59617 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 253.667-18 chr7 2195451 2195803 + 1 NA intron (NM_001013837, intron 10 of 18) intron (NM_001013837, intron 10 of 18) 37318 NM_001013836 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 194.5-9 chr15 67797248 67797549 + 1 NA intron (NM_001206804, intron 21 of 21) L1MEd|LINE|L1 -28111 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 260.5-4 chr14 43662990 43663412 + 1 NA Intergenic Intergenic 844082 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 182.333-3 chr1 68430441 68430637 + 1 NA intron (NM_000329, intron 13 of 13) intron (NM_000329, intron 13 of 13) 19415 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 158.167-21 chr2 46770625 46770843 + 1 NA Intergenic Intergenic -45934 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 150.667-85 chr6 112212679 112212985 + 1 NA intron (NM_001105206, intron 3 of 38) intron (NM_001105206, intron 3 of 38) -23764 NR_121193 101927640 Hs.510007 NR_121193 LOC101927640 - uncharacterized LOC101927640 ncRNA 177.333-9 chr10 31843401 31843684 + 1 NA exon (NM_001270699, exon 4 of 16) exon (NM_001270699, exon 4 of 16) 65384 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 168.5-69 chr8 129828983 129829260 + 1 NA Intergenic Intergenic -42497 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 312.333-4 chr11 41235338 41235819 + 1 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 224058 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 225.5-39 chr5 38157579 38157902 + 1 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 9260 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 140.333 chr1 27789084 27789493 + 1 NA intron (NM_177424, intron 1 of 8) intron (NM_177424, intron 1 of 8) 16069 NM_177424 23673 Hs.523855 NM_177424 ENSG00000117758 STX12 STX13|STX14 syntaxin 12 protein-coding 179.5-13 chr16 82491034 82491268 + 1 NA Intergenic Intergenic -135818 NM_001220488 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 209.5-29 chr4 34344438 34344783 + 1 NA Intergenic Intergenic -74863 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 163.5-75 chr8 88131652 88131940 + 1 NA intron (NM_005941, intron 4 of 9) intron (NM_005941, intron 4 of 9) 195687 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 146.667-94 chr8 88166125 88166344 + 1 NA intron (NM_005941, intron 4 of 9) intron (NM_005941, intron 4 of 9) 161249 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 182.833-11 chr11 117872771 117873142 + 1 NA intron (NM_001164836, intron 1 of 9) intron (NM_001164836, intron 1 of 9) 3702 NM_001164832 53826 Hs.744850 NM_022003 ENSG00000137726 FXYD6 - FXYD domain containing ion transport regulator 6 protein-coding 281.333-11 chr5 76738451 76738885 + 1 NA Intergenic AluJb|SINE|Alu 22542 NM_001992 2149 Hs.482562 NM_001992 ENSG00000181104 F2R CF2R|HTR|PAR-1|PAR1|TR coagulation factor II thrombin receptor protein-coding 563.833 chr8 134302321 134303586 + 1 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -295118 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 382.667-4 chr5 18806577 18807303 + 1 NA Intergenic Intergenic 999666 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 151.5-46 chr3 66205915 66206176 + 1 NA intron (NM_173471, intron 1 of 10) LTR16E1|LTR|ERVL -14697 NR_028475 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 200.5-17 chr17 77863711 77864083 + 1 NA Intergenic Intergenic 20190 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 243.333-13 chr2 55288061 55288406 + 1 NA 3' UTR (NM_018084, exon 32 of 32) 3' UTR (NM_018084, exon 32 of 32) 5914 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 328.5-5 chr21 28315532 28316425 + 1 NA Intergenic Intergenic -87311 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 156.833-35 chr3 44487470 44487941 + 1 NA Intergenic Intergenic -10035 NM_181489 353274 Hs.250481 NM_181489 ENSG00000185219 ZNF445 ZKSCAN15|ZNF168|ZSCAN47 zinc finger protein 445 protein-coding 142.5-62 chr5 119536134 119536354 + 1 NA intron (NM_001199291, intron 23 of 24) intron (NM_001199291, intron 23 of 24) 83747 NM_001199291 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 191.667-31 chr22 34571990 34572315 + 1 NA Intergenic L1MC3|LINE|L1 425764 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 239.667-4 chr11 114117434 114117878 + 1 NA intron (NM_006006, intron 2 of 6) L2c|LINE|L2 54445 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 117.167-32 chr18 7886484 7886826 + 1 NA intron (NM_002845, intron 2 of 30) MIRc|SINE|MIR 319339 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 252.667-19 chr4 95689811 95690306 + 1 NA Intergenic L1MDa|LINE|L1 -141085 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 322.333-7 chr6 64523530 64523880 + 1 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 716869 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 179.667-3 chr10 23628773 23628995 + 1 NA Intergenic Intergenic -65843 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 139.167-16 chr12 57052552 57052762 + 1 NA Intergenic Intergenic -1459 NM_001256041 4640 Hs.5394 NM_005379 ENSG00000166866 MYO1A BBMI|DFNA48|MIHC|MYHL myosin IA protein-coding 159.667-96 chr8 131458625 131458916 + 1 NA Intergenic Intergenic -417861 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 124.5-54 chr4 135805588 135805799 + 1 NA Intergenic Intergenic 82400 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 176.667-3 chr1 70247800 70248076 + 1 NA intron (NR_146810, intron 10 of 12) L1MB8|LINE|L1 26558 NM_001350616 9295 Hs.479693 NM_004768 ENSG00000116754 SRSF11 NET2|SFRS11|dJ677H15.2|p54 serine and arginine rich splicing factor 11 protein-coding 122.667-94 chr8 96444227 96444471 + 1 NA Intergenic Intergenic -49464 NM_002998 6383 Hs.1501 NM_002998 ENSG00000169439 SDC2 CD362|HSPG|HSPG1|SYND2 syndecan 2 protein-coding 181.833-37 chr4 120334863 120335213 + 1 NA Intergenic Intergenic -268190 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 167.333-4 chr1 117386061 117386292 + 1 NA intron (NM_006699, intron 1 of 12) intron (NM_006699, intron 1 of 12) 18727 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 172.667-54 chr3 146277935 146278167 + 1 NA Intergenic L1MB7|LINE|L1 -26872 NM_001128306 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 181.833-15 chr14 85979659 85980116 + 1 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 45209 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 147.667-45 chr3 118366970 118367406 + 1 NA Intergenic L1M4b|LINE|L1 -274580 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 237.833-4 chr2 16129730 16130114 + 1 NA Intergenic Intergenic 79495 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 125.667-80 chr3 164120480 164120689 + 1 NA Intergenic Intergenic 50972 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 255.667-4 chr11 14764961 14765545 + 1 NA intron (NM_000922, intron 1 of 15) intron (NM_000922, intron 1 of 15) 121449 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 230.333-2 chr12 7064606 7065096 + 1 NA intron (NM_001346850, intron 4 of 10) intron (NM_001346850, intron 4 of 10) 4133 NM_001346850 716 Hs.458355 NM_001734 ENSG00000182326 C1S EDSPD2 complement C1s protein-coding 304.167-7 chr5 85388362 85388801 + 1 NA Intergenic Intergenic -893863 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 182.667-29 chr2 4149526 4149835 + 1 NA Intergenic L1ME1|LINE|L1 175519 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 287.5 chr1 115733839 115734283 + 1 NA intron (NM_001232, intron 4 of 10) intron (NM_001232, intron 4 of 10) 34744 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 155.167-23 chr2 47135668 47135936 + 1 NA intron (NM_001163561, intron 3 of 6) L1MC1|LINE|L1 19506 NM_173649 285051 Hs.531575 NM_173649 ENSG00000239605 STPG4 C2orf61|GSE sperm-tail PG-rich repeat containing 4 protein-coding 224.333-19 chr20 40500378 40500787 + 1 NA Intergenic MER33|DNA|hAT-Charlie 188654 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 143.667-39 chr14 61314108 61314321 + 1 NA Intergenic Intergenic -7229 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 156.667-12 chr10 17309830 17310099 + 1 NA Intergenic L1ME1|LINE|L1 -76972 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 221.5-35 chr8 76949633 76950022 + 1 NA Intergenic L1M5|LINE|L1 17023 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 350.167-4 chr3 94877202 94877842 + 1 NA Intergenic Intergenic -60741 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 241.5-3 chr1 167889789 167890077 + 1 NA intron (NM_018417, intron 8 of 32) L1MA3|LINE|L1 24201 NM_001167749 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 186.5-19 chr12 9859368 9859604 + 1 NA intron (NM_005127, intron 2 of 4) L1ME3|LINE|L1 10373 NM_005127 9976 Hs.85201 NM_005127 ENSG00000110852 CLEC2B AICL|CLECSF2|HP10085|IFNRG1 C-type lectin domain family 2 member B protein-coding 256.5-23 chr3 151219540 151219961 + 1 NA intron (NM_014879, intron 1 of 2) intron (NM_014879, intron 1 of 2) -16534 NM_013308 29909 Hs.549152 NM_013308 ENSG00000174946 GPR171 H963 G protein-coupled receptor 171 protein-coding 136.5-88 chr8 65796936 65797094 + 1 NA intron (NM_001242318, intron 1 of 12) L1ME2|LINE|L1 -7958 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 158.5-3 chr1 91158002 91158231 + 1 NA Intergenic Intergenic -135861 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 137.5-57 chr3 43474965 43475143 + 1 NA intron (NM_001346464, intron 12 of 13) L1ME4a|LINE|L1 -123092 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 261.667-6 chr11 11221690 11222026 + 1 NA Intergenic LTR85b|LTR|Gypsy? 131392 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 190.5-27 chr18 821787 822124 + 1 NA Intergenic MIR|SINE|MIR -9713 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 125.667-24 chr12 13328830 13329213 + 1 NA Intergenic Intergenic 47724 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 172.667-58 chr4 38833308 38833525 + 1 NA intron (NM_006068, intron 1 of 1) L1MA4|LINE|L1 23401 NM_006068 10333 Hs.575090 NM_006068 ENSG00000174130 TLR6 CD286 toll like receptor 6 protein-coding 155.333-45 chr2 38217752 38218115 + 1 NA Intergenic MIRb|SINE|MIR 86828 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 250.167-8 chr18 1842815 1843109 + 1 NA Intergenic Intergenic -483333 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 270.333 chr1 45650428 45650943 + 1 NA intron (NM_021639, intron 6 of 12) intron (NM_021639, intron 6 of 12) -4000 NR_026768 728963 Hs.675157 NR_026768 RPS15AP10 RPS15A_4_42 ribosomal protein S15a pseudogene 10 pseudo 231.167-20 chr3 196916901 196917405 + 1 NA intron (NM_001308045, intron 6 of 8) AluSz6|SINE|Alu -22724 NR_046630 100874001 Hs.591671 NR_046630 NCBP2-AS1 - NCBP2 antisense RNA 1 ncRNA 168.5-3 chr1 56493556 56493777 + 1 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 78703 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 125.333-72 chr21 25053451 25053617 + 1 NA intron (NR_046198, intron 3 of 3) intron (NR_046198, intron 3 of 3) 212984 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 127.667-74 chr5 114686225 114686429 + 1 NA intron (NR_130785, intron 1 of 12) intron (NR_130785, intron 1 of 12) 87086 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 197.667-36 chr20 51033817 51034175 + 1 NA Intergenic LTR40b|LTR|ERVL -10889 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 121.667-26 chr14 79461747 79461878 + 1 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 182432 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 178.5-21 chr12 51724526 51724771 + 1 NA intron (NM_001369788, intron 12 of 25) intron (NM_001369788, intron 12 of 25) 107269 NM_001013690 401720 Hs.648218 NM_001013690 ENSG00000261308 FIGNL2 - fidgetin like 2 protein-coding 194.667-66 chr8 134804841 134805163 + 1 NA promoter-TSS (NR_029599) promoter-TSS (NR_029599) -57 NR_029599 407033 NR_029599 ENSG00000199153 MIR30D MIRN30D|mir-30d microRNA 30d ncRNA 189.333-40 chr4 86390794 86391030 + 1 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) -20045 NM_001318068 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 185.333-60 chr8 18188165 18188469 + 1 NA intron (NM_001160179, intron 2 of 4) intron (NM_001160179, intron 2 of 4) 17850 NM_001291962 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 227.167-14 chr2 28783962 28784414 + 1 NA intron (NM_206876, intron 6 of 8) intron (NM_206876, intron 6 of 8) -26646 NM_001142634 245711 Hs.511956 NM_182756 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 222.667-16 chr19 15330000 15330296 + 1 NA intron (NM_001330384, intron 1 of 11) intron (NM_001330384, intron 1 of 11) 2391 NM_001330384 23476 Hs.187763 NM_014299 ENSG00000141867 BRD4 CAP|HUNK1|HUNKI|MCAP bromodomain containing 4 protein-coding 158.333-39 chr2 39367817 39368042 + 1 NA intron (NM_003618, intron 2 of 33) intron (NM_003618, intron 2 of 33) 69356 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 130.167-23 chr17 61529672 61529841 + 1 NA Intergenic Intergenic 61463 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 115.5-9 chr1 201668067 201668184 + 1 NA intron (NM_020443, intron 1 of 29) intron (NM_020443, intron 1 of 29) 19803 NM_020443 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 183.667-72 chr7 10610773 10610981 + 1 NA intron (NR_147499, intron 1 of 2) (TAT)n|Simple_repeat|Simple_repeat -91799 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 199.5-36 chr5 148078455 148078765 + 1 NA intron (NM_006846, intron 4 of 32) L1MB7|LINE|L1 14630 NM_001127698 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 148.833-54 chr6 157178761 157179193 + 1 NA intron (NM_001363725, intron 9 of 17) intron (NM_001363725, intron 9 of 17) 142550 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 228.333-39 chr8 102833033 102833494 + 1 NA intron (NM_015878, intron 9 of 12) intron (NM_015878, intron 9 of 12) 26441 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 181.5-22 chr18 9837479 9837792 + 1 NA intron (NM_006868, intron 5 of 6) L1M5|LINE|L1 -48338 NM_032243 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 125.5-25 chr16 47405140 47405334 + 1 NA intron (NM_030790, intron 6 of 17) intron (NM_030790, intron 6 of 17) 55826 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 172.667-35 chr18 11180841 11181098 + 1 NA Intergenic Intergenic -32207 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 166.167-51 chr5 124316025 124316312 + 1 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 122352 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 212.333-16 chr18 43330756 43331116 + 1 NA Intergenic Intergenic -53446 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 191.333-27 chr4 173640420 173640705 + 1 NA Intergenic Intergenic 110104 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 344.5-2 chr12 75793982 75794538 + 1 NA Intergenic L1M4|LINE|L1 237516 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 237.333-28 chr3 191243786 191244097 + 1 NA intron (NM_198184, intron 3 of 4) L1ME3B|LINE|L1 -9336 NR_133663 106480738 NR_133663 ENSG00000233308 OSTN-AS1 - OSTN antisense RNA 1 ncRNA 234.667-3 chr1 163586927 163587188 + 1 NA Intergenic MARNA|DNA|TcMar-Mariner -163866 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 179.5-4 chr12 20642028 20642450 + 1 NA intron (NM_000921, intron 10 of 15) intron (NM_000921, intron 10 of 15) -53116 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 171.667-14 chr11 93977815 93978072 + 1 NA Intergenic Charlie1b|DNA|hAT-Charlie -43411 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 126.667-70 chr4 113403298 113403612 + 1 NA Intergenic Intergenic 110616 NM_001354280 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 172.333-48 chr3 6383365 6383610 + 1 NA Intergenic L1MC2|LINE|L1 421962 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 131.333-49 chr2 79940604 79940785 + 1 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -74111 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 248.667-8 chr12 41031581 41031941 + 1 NA intron (NM_001843, intron 23 of 23) intron (NM_001843, intron 23 of 23) 123404 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 139.667-46 chr19 47984196 47984337 + 1 NA intron (NM_001128326, intron 1 of 5) Tigger18a|DNA|TcMar-Tigger 7904 NM_001128326 100131137 Hs.651072 NM_001128326 ENSG00000188334 BSPH1 BSP1|ELSPBP2 binder of sperm protein homolog 1 protein-coding 180.167-54 chr7 108141827 108142257 + 1 NA Intergenic L1MB7|LINE|L1 -11681 NM_001318046 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 240.333-5 chr10 117997215 117997598 + 1 NA Intergenic Intergenic -49415 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 305.833-2 chr10 88857444 88857978 + 1 NA Intergenic Intergenic -5867 NM_144590 118932 Hs.217484 NM_144590 ENSG00000152766 ANKRD22 - ankyrin repeat domain 22 protein-coding 131.333-109 chr9 113520108 113520260 + 1 NA intron (NM_130795, intron 7 of 15) intron (NM_130795, intron 7 of 15) -16427 NM_001276260 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 186.333-26 chr18 27058276 27058707 + 1 NA intron (NM_001256316, intron 2 of 4) MLT1H1|LTR|ERVL-MaLR 126817 NM_001256316 83539 Hs.44584 NM_031422 ENSG00000154080 CHST9 GALNAC4ST-2|GalNAc4ST2 carbohydrate sulfotransferase 9 protein-coding 249.167-2 chr1 202389259 202389625 + 1 NA intron (NM_002481, intron 1 of 23) AluY|SINE|Alu 40740 NM_001167858 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 200.667-42 chr5 10408138 10408442 + 1 NA intron (NM_001270660, intron 16 of 24) intron (NM_001270660, intron 16 of 24) 5926 NR_162106 113218502 NR_162106 MIR10397 - microRNA 10397 ncRNA 187.333-47 chr3 978980 979329 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR -113870 NM_001349361 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 122.333-112 chr8 104450542 104450768 + 1 NA intron (NM_001385, intron 2 of 9) intron (NM_001385, intron 2 of 9) 16400 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 166.333-87 chr9 100031254 100031491 + 1 NA intron (NM_015051, intron 4 of 11) MER41-int|LTR|ERV1 67628 NM_015051 23071 Hs.154023 NM_015051 ENSG00000023318 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 137.333-95 chr7 87740678 87740962 + 1 NA intron (NM_138290, intron 6 of 11) intron (NM_138290, intron 6 of 11) -27497 NM_000927 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 291.667-24 chr8 82972842 82973320 + 1 NA Intergenic MER4-int|LTR|ERV1 60977 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 181.833-32 chr3 32672814 32673129 + 1 NA Intergenic Intergenic -12217 NM_001256741 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 198.667-2 chr1 85956625 85956957 + 1 NA intron (NM_152890, intron 24 of 59) CR1_Mam|LINE|CR1 199680 NM_001349955 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 267.667-16 chr4 37716103 37716567 + 1 NA Intergenic Intergenic -29959 NM_001085399 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 173.333-15 chr12 20344590 20344870 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -24515 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 201.333-34 chr6 14333261 14333581 + 1 NA Intergenic Intergenic -47967 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 169.833-19 chr2 49697801 49698219 + 1 NA Intergenic MIRc|SINE|MIR 276193 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 196.167-35 chr8 77647541 77648170 + 1 NA Intergenic Intergenic 197158 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 118.667-75 chr3 5663913 5664089 + 1 NA Intergenic L1M4b|LINE|L1 -413746 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 125.167-32 chr18 35401383 35401688 + 1 NA Intergenic L1M5|LINE|L1 -24198 NM_001322290 252884 Hs.351005 NM_145756 ENSG00000186496 ZNF396 ZSCAN14 zinc finger protein 396 protein-coding 181.5-54 chr7 2176543 2176773 + 1 NA intron (NM_001013837, intron 10 of 18) L1M5|LINE|L1 56287 NM_001013836 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 465.5 chr3 194477897 194478608 + 1 NA intron (NM_001367549, intron 2 of 33) L2b|LINE|L2 8750 NM_001367549 79572 Hs.529609 NM_024524 ENSG00000133657 ATP13A3 AFURS1 ATPase 13A3 protein-coding 177.333-60 chr7 125757667 125758053 + 1 NA Intergenic L1MA7|LINE|L1 -493569 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 128.5-18 chr12 43807524 43807700 + 1 NA Intergenic Intergenic -1295 NR_073472 5756 Hs.189075 NM_002822 ENSG00000151239 TWF1 A6|PTK9 twinfilin actin binding protein 1 protein-coding 273.333-19 chr5 66674060 66674411 + 1 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) 77842 NM_001290228 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 211.667-13 chr15 50822717 50822996 + 1 NA Intergenic Intergenic -57150 NM_032802 84888 Hs.401537 NM_032802 ENSG00000138600 SPPL2A IMP3|PSL2 signal peptide peptidase like 2A protein-coding 265.667-7 chr13 23316991 23317467 + 1 NA intron (NM_000231, intron 6 of 7) HERVL-int|LTR|ERVL 58279 NM_001278055 26278 Hs.159492 NM_014363 ENSG00000151835 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 220.833-15 chr4 45540405 45540648 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR 583528 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 226.667-30 chr7 6678206 6678669 + 1 NA Intergenic AluJr4|SINE|Alu 28510 NM_006956 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 170.333-13 chr10 98729033 98729279 + 1 NA intron (NM_001166245, intron 2 of 9) L1M4a2|LINE|L1 195412 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 152.667-18 chr11 115791872 115792123 + 1 NA Intergenic Intergenic -31797 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 256.333-5 chr10 61521322 61521673 + 1 NA Intergenic L1M5|LINE|L1 41456 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 165.333-56 chr6 133414574 133415070 + 1 NA intron (NM_172103, intron 3 of 18) L1ME4a|LINE|L1 173323 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 255.333-8 chr14 75356987 75357493 + 1 NA Intergenic Intergenic 62836 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 161.5 chr1 30210509 30210811 + 1 NA Intergenic AluJr|SINE|Alu -173048 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 190.5-10 chr11 81474927 81475302 + 1 NA Intergenic Intergenic 415722 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 210.333-6 chr11 23930477 23930873 + 1 NA Intergenic Intergenic -511485 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 189.667-20 chr14 71153677 71154017 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -166629 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 463.5-2 chr16 63556441 63557257 + 1 NA Intergenic Intergenic -1520411 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 178.667-25 chr2 45488258 45488529 + 1 NA intron (NM_018079, intron 14 of 20) intron (NM_018079, intron 14 of 20) 122874 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 257.333-20 chr6 11633768 11634070 + 1 NA Intergenic Intergenic 96170 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 321.667-5 chr20 6452069 6452631 + 1 NA intron (NR_109953, intron 2 of 3) intron (NR_109953, intron 2 of 3) 25618 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 282.333-10 chr22 43371789 43372147 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -28363 NR_146918 105373054 NR_146918 ENSG00000236117 LINC01639 - long intergenic non-protein coding RNA 1639 ncRNA 279.167-10 chr4 42187098 42187829 + 1 NA Intergenic MIRb|SINE|MIR -34808 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 245.5-4 chr12 30764724 30765079 + 1 NA intron (NR_135046, intron 1 of 1) intron (NR_135046, intron 1 of 1) 9827 NR_135046 645485 Hs.232332 NR_135046 ENSG00000246331 LOC645485 - uncharacterized LOC645485 ncRNA 165.5-15 chr13 41123491 41123799 + 1 NA Intergenic Intergenic 9157 NM_152903 89890 Hs.534040 NM_152903 ENSG00000165572 KBTBD6 - kelch repeat and BTB domain containing 6 protein-coding 350.167-2 chr14 51081117 51081904 + 1 NA intron (NM_015163, intron 1 of 9) intron (NM_015163, intron 1 of 9) 14194 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 121.5-86 chr5 165025602 165025830 + 1 NA Intergenic L1PA16|LINE|L1 555437 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 284.5-16 chr8 17330249 17330830 + 1 NA 3' UTR (NM_001363172, exon 13 of 13) 3' UTR (NM_001363172, exon 13 of 13) 82812 NM_004686 9108 Hs.625674 NM_004686 ENSG00000003987 MTMR7 - myotubularin related protein 7 protein-coding 150.333-89 chr6 95168342 95168631 + 1 NA Intergenic Intergenic 408965 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 310.667-2 chr17 29415099 29415563 + 1 NA intron (NM_025142, intron 1 of 17) L1MB5|LINE|L1 24406 NM_025142 57551 Hs.597434 NM_020791 ENSG00000160551 TAOK1 KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1 TAO kinase 1 protein-coding 119.333-4 chr1 84701108 84701326 + 1 NA Intergenic Intergenic -10749 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 182.333-47 chr4 62171813 62172076 + 1 NA Intergenic Intergenic -10179 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 207.667-19 chr18 36702494 36702971 + 1 NA intron (NM_001281740, intron 17 of 28) L4_C_Mam|LINE|RTE-X -39314 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 156.667-64 chr4 71331943 71332236 + 1 NA intron (NM_001098484, intron 3 of 25) L1MA3|LINE|L1 -6964 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 191.5-27 chr2 160487900 160488252 + 1 NA intron (NM_002897, intron 1 of 13) intron (NM_002897, intron 1 of 13) 5731 NM_002897 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 132.5 chr1 109964668 109965160 + 1 NA Intergenic L1MC1|LINE|L1 -19851 NM_001242673 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 325.5-2 chr5 61468544 61469068 + 1 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 136548 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 314.667-6 chr5 131736673 131737418 + 1 NA intron (NM_133372, intron 2 of 17) intron (NM_133372, intron 2 of 17) 59972 NM_133372 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 191.333-9 chr13 55817172 55817629 + 1 NA Intergenic Intergenic 642946 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 222.333-10 chr14 56523737 56524123 + 1 NA intron (NR_135241, intron 1 of 1) intron (NR_135241, intron 1 of 1) 9599 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 160.5-41 chr4 175624709 175624895 + 1 NA Intergenic Intergenic 162874 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 158.667-38 chr19 285930 286227 + 1 NA intron (NM_003712, intron 3 of 5) AluSx|SINE|Alu 5061 NM_177543 8612 Hs.465506 NM_003712 ENSG00000141934 PLPP2 LPP2|PAP-2c|PAP2-g|PPAP2C phospholipid phosphatase 2 protein-coding 133.333-18 chr10 123173307 123173482 + 1 NA Intergenic Intergenic 18992 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 356.5 chr10 62845583 62846187 + 1 NA Intergenic MIRc|SINE|MIR -26718 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 340.167-4 chr20 781854 782344 + 1 NA Intergenic AluSq2|SINE|Alu -6114 NM_001370086 113278 Hs.283865 NM_033409 ENSG00000101276 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 member 3 protein-coding 187.333-68 chr5 167361418 167361637 + 1 NA intron (NM_001122679, intron 2 of 29) intron (NM_001122679, intron 2 of 29) -193126 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 239.5-17 chr3 191046950 191047229 + 1 NA Intergenic L1M4b|LINE|L1 -152152 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 196.667-27 chr2 44693933 44694196 + 1 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 244824 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 220.833-12 chr3 128644483 128645029 + 1 NA intron (NM_002950, intron 2 of 9) FLAM_C|SINE|Alu 6062 NM_002950 6184 Hs.518244 NM_002950 ENSG00000163902 RPN1 OST1|RBPH1 ribophorin I protein-coding 147.333 chr1 39406221 39406470 + 1 NA intron (NM_012090, intron 52 of 92) intron (NM_012090, intron 52 of 92) -2728 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 298.667 chr1 171414719 171415215 + 1 NA Intergenic L1M3|LINE|L1 -70563 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 162.5-74 chr8 136403846 136404108 + 1 NA Intergenic L1MA5|LINE|L1 -126821 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 200.5-27 chr22 23002627 23002900 + 1 NA Intergenic MER50B|LTR|ERV1 -67756 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 271.167-2 chr1 86144278 86144570 + 1 NA intron (NM_152890, intron 2 of 59) intron (NM_152890, intron 2 of 59) 12047 NM_001349955 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 280.833-9 chr8 79880939 79881342 + 1 NA Intergenic Intergenic -9403 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 183.333-55 chr7 82698547 82698849 + 1 NA Intergenic Intergenic -254742 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 207.333-50 chr7 46102281 46102656 + 1 NA Intergenic AluJr|SINE|Alu -181196 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 173.667-22 chr17 26858207 26858399 + 1 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat 230938 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 205.667-29 chr2 7272304 7272796 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR -148711 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 199.333-34 chr5 2485799 2486026 + 1 NA Intergenic L1M4|LINE|L1 -173711 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 242.667-8 chr12 44084733 44085073 + 1 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 248822 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 284.167-4 chr13 73930259 73930574 + 1 NA intron (NM_007249, intron 3 of 7) intron (NM_007249, intron 3 of 7) 203513 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 166.333-66 chr6 41977873 41978203 + 1 NA intron (NM_001136017, intron 1 of 4) AluSx|SINE|Alu -36190 NM_001760 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 183.667-13 chr10 44515115 44515360 + 1 NA Intergenic L3|LINE|CR1 -130140 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 207.5-11 chr15 33972804 33973077 + 1 NA intron (NM_001320917, intron 1 of 1) MamRTE1|LINE|RTE-BovB 4443 NM_001320917 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 122.667-50 chr20 12090561 12090901 + 1 NA Intergenic Intergenic 172838 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 252.5 chr1 40588515 40588952 + 1 NA Intergenic L2b|LINE|L2 57096 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 247.5-29 chr8 120213326 120213760 + 1 NA intron (NM_021110, intron 13 of 47) (AAAC)n|Simple_repeat|Simple_repeat 88441 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 191.833-34 chr8 78234725 78235102 + 1 NA Intergenic Intergenic -281427 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 114.833-11 chr11 13420847 13421337 + 1 NA intron (NM_032320, intron 3 of 8) intron (NM_032320, intron 3 of 8) 19187 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 137.5-61 chr3 144050717 144051017 + 1 NA Intergenic L1MC3|LINE|L1 77786 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 214.5-3 chr10 32287855 32288148 + 1 NA intron (NM_001272004, intron 6 of 13) intron (NM_001272004, intron 6 of 13) 59157 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 135.167-10 chr1 208589680 208589830 + 1 NA Intergenic Intergenic -138933 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 214.667-40 chr8 109230490 109230915 + 1 NA Intergenic Intergenic 99231 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 125.667-58 chr2 52723088 52723313 + 1 NA Intergenic Intergenic -20585 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 157.5-16 chr14 24221038 24221254 + 1 NA intron (NR_137631, intron 1 of 6) Charlie18a|DNA|hAT-Charlie -5076 NM_001199821 145553 Hs.220963 NM_138476 ENSG00000213920 MDP1 FN6PASE|MDP-1 magnesium dependent phosphatase 1 protein-coding 288.5-7 chr4 74623380 74623686 + 1 NA Intergenic L2a|LINE|L2 170990 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 217.667-35 chr5 97431576 97431945 + 1 NA Intergenic L2a|LINE|L2 -72936 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 211.667-4 chr1 118994933 118995328 + 1 NA Intergenic Intergenic -5620 NM_152380 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 198.667-37 chr3 110326908 110327141 + 1 NA Intergenic (ATAGA)n|Simple_repeat|Simple_repeat 724196 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 175.667-68 chr8 49503253 49503548 + 1 NA intron (NR_134294, intron 1 of 1) intron (NR_134294, intron 1 of 1) 8780 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 271.667-4 chr15 77455848 77456316 + 1 NA intron (NM_018200, intron 2 of 10) intron (NM_018200, intron 2 of 10) 35194 NM_001304504 10363 Hs.69594 NM_018200 ENSG00000140382 HMG20A HMGX1|HMGXB1 high mobility group 20A protein-coding 383.5-4 chr8 126497962 126498783 + 1 NA Intergenic Intergenic 60106 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 161.667-63 chr4 178381239 178381499 + 1 NA Intergenic L1PA8A|LINE|L1 -473433 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 179.833-13 chr16 79116115 79116406 + 1 NA intron (NM_001291997, intron 7 of 7) Tigger1|DNA|TcMar-Tigger 484477 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 175.667-53 chr5 51971145 51971408 + 1 NA Intergenic Intergenic -36755 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 194.667-9 chr10 89506086 89506490 + 1 NA intron (NM_213606, intron 2 of 7) L1PA7|LINE|L1 29306 NM_213606 387700 Hs.530338 NM_213606 ENSG00000152779 SLC16A12 CJMG|CRT2|CTRCT47|MCT12 solute carrier family 16 member 12 protein-coding 141.5-21 chr12 40870262 40870457 + 1 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) -37998 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 224.333-6 chr12 111532744 111533001 + 1 NA intron (NR_132311, intron 5 of 23) intron (NR_132311, intron 5 of 23) 66443 NM_002973 6311 Hs.76253 NM_002973 ENSG00000204842 ATXN2 ATX2|SCA2|TNRC13 ataxin 2 protein-coding 166.333-10 chr10 105263146 105263373 + 1 NA intron (NM_014978, intron 26 of 26) L2a|LINE|L2 557074 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 272.833-5 chr2 46700894 46701470 + 1 NA intron (NM_144949, intron 1 of 1) intron (NM_144949, intron 1 of 1) 1887 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 262.667-25 chr5 33766053 33766665 + 1 NA intron (NM_001324511, intron 2 of 2) L1MC3|LINE|L1 125631 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 295.5-13 chr8 134314952 134315673 + 1 NA Intergenic Intergenic -282759 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 158.5-46 chr20 15175429 15175677 + 1 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -21287 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 260.5-24 chr7 16670655 16671129 + 1 NA intron (NM_001362717, intron 2 of 11) intron (NM_001362717, intron 2 of 11) 9678 NM_001362717 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 217.167-8 chr15 67089083 67089698 + 1 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) 23788 NM_005902 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 187.5-14 chr15 22867450 22867771 + 1 NA 3' UTR (NM_001184889, exon 10 of 10) 3' UTR (NM_001184889, exon 10 of 10) 28969 NM_001008860 81614 Hs.591003 NM_030922 ENSG00000140157 NIPA2 SLC57A2 NIPA magnesium transporter 2 protein-coding 352.833-2 chr3 35294116 35294969 + 1 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 99481 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 146.333-42 chr18 21108751 21109003 + 1 NA intron (NM_005406, intron 1 of 32) intron (NM_005406, intron 1 of 32) 2936 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 397.833-3 chr8 86183393 86184128 + 1 NA Intergenic Intergenic 46621 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 170.167-16 chr13 29416632 29416982 + 1 NA intron (NM_001033602, intron 6 of 13) L1MC4|LINE|L1 -11853 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 152.167-69 chr7 97249683 97249990 + 1 NA Intergenic MER77|LTR|ERVL 133243 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 213.667-45 chr9 70976067 70976493 + 1 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -107228 NM_024971 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 184.333-15 chr15 91718115 91718352 + 1 NA Intergenic Intergenic -135475 NM_013272 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 255.333-7 chr14 60969162 60969719 + 1 NA 3' UTR (NM_002431, exon 8 of 8) 3' UTR (NM_002431, exon 8 of 8) 11639 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 311.167 chr11 83229399 83230206 + 1 NA intron (NM_001300975, intron 7 of 10) intron (NM_001300975, intron 7 of 10) 36090 NM_001300976 338699 Hs.503438 NM_182603 ENSG00000137494 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 288.833-9 chr7 8471027 8471675 + 1 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 37742 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 118.5-47 chr19 53075683 53075911 + 1 NA intron (NM_001322126, intron 4 of 6) MER21B|LTR|ERVL 11240 NM_001322136 90338 Hs.655967 NM_033288 ENSG00000170949 ZNF160 F11|HKr18|HZF5|KR18 zinc finger protein 160 protein-coding 174.833-22 chr2 114184004 114184345 + 1 NA Intergenic Intergenic -204190 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 207.167-30 chr8 107070932 107071456 + 1 NA Intergenic Intergenic 265321 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 262.667 chr1 34523512 34523885 + 1 NA Intergenic Intergenic 145996 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 199.5-40 chr7 34001132 34001524 + 1 NA intron (NM_133468, intron 7 of 15) L1M4|LINE|L1 95789 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 289.333-13 chr5 167498973 167499312 + 1 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -74517 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 115.5-88 chr6 44386920 44387207 + 1 NA promoter-TSS (NM_001253) promoter-TSS (NM_001253) -643 NM_001253 988 Hs.485471 NM_001253 ENSG00000096401 CDC5L CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 cell division cycle 5 like protein-coding 167.5-56 chr6 141118960 141119134 + 1 NA Intergenic Intergenic 435233 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 231.5-10 chr21 32238926 32239350 + 1 NA Intergenic Intergenic 39911 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 182.5-36 chr6 42810433 42810714 + 1 NA intron (NM_001318819, intron 3 of 13) intron (NM_001318819, intron 3 of 13) -10483 NM_015349 23506 Hs.658033 NM_015349 ENSG00000112624 BICRAL GLTSCR1L|KIAA0240 BRD4 interacting chromatin remodeling complex associated protein like protein-coding 253.5-17 chr2 226690573 226691124 + 1 NA Intergenic Intergenic -32055 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 135.333-93 chr9 32371190 32371468 + 1 NA Intergenic Intergenic -13274 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 124.333-74 chr5 20652088 20652567 + 1 NA intron (NR_149120, intron 1 of 11) L1PA8A|LINE|L1 -36792 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 367.667-2 chr19 28276927 28277430 + 1 NA Intergenic Intergenic -329510 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 196.667-29 chr2 168788940 168789251 + 1 NA intron (NM_001171631, intron 2 of 20) L1MC4|LINE|L1 2556 NM_001171631 115677 Hs.189780 NM_052946 ENSG00000163072 NOSTRIN DaIP2 nitric oxide synthase trafficking protein-coding 276.667-5 chr5 30625550 30626004 + 1 NA Intergenic Intergenic -567909 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 129.667-12 chr11 46002916 46003075 + 1 NA intron (NR_147890, intron 5 of 18) intron (NR_147890, intron 5 of 18) 80339 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 287.167 chr10 70821906 70822359 + 1 NA intron (NM_003901, intron 2 of 14) intron (NM_003901, intron 2 of 14) 6184 NM_003901 8879 Hs.499984 NM_003901 ENSG00000166224 SGPL1 NPHS14|S1PL|SPL sphingosine-1-phosphate lyase 1 protein-coding 141.333-87 chr6 133171430 133171709 + 1 NA Intergenic Intergenic -69788 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 251.667-8 chr2 119462964 119463376 + 1 NA intron (NM_002980, intron 6 of 12) intron (NM_002980, intron 6 of 12) -13284 NR_147846 107105282 Hs.670673 NR_147846 ENSG00000231013 LOC107105282 - uncharacterized LOC107105282 ncRNA 259.333-23 chr8 104846469 104846997 + 1 NA Intergenic L1PREC2|LINE|L1 -257709 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 114.333-67 chr2 58654910 58655040 + 1 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 134222 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 328.667-14 chr7 30401132 30401627 + 1 NA intron (NR_108081, intron 1 of 2) L1MD2|LINE|L1 10494 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 176.667-72 chr8 20354468 20354902 + 1 NA Intergenic Intergenic -50722 NM_021020 11178 Hs.521432 NM_021020 ENSG00000061337 LZTS1 F37|FEZ1 leucine zipper tumor suppressor 1 protein-coding 271.5-15 chr2 149877369 149877862 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR -18424 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 232.333-4 chr10 53828329 53828647 + 1 NA intron (NM_001142773, intron 29 of 31) intron (NM_001142773, intron 29 of 31) -657742 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 125.5-79 chr8 74555284 74555491 + 1 NA Intergenic Intergenic -6778 NR_049871 100847091 NR_049871 ENSG00000283505 MIR5681B - microRNA 5681b ncRNA 253.667-23 chr8 126120939 126121482 + 1 NA Intergenic L1M3a|LINE|L1 -170013 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 235.667-4 chr11 48534019 48534483 + 1 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR 45458 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 197.167-33 chr22 25934866 25935203 + 1 NA intron (NM_001318245, intron 34 of 43) intron (NM_001318245, intron 34 of 43) 192846 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 210.667-4 chr10 64688747 64689000 + 1 NA Intergenic Intergenic -136655 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 285.667-11 chr6 141928298 141928941 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 160180 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 156.333-18 chr11 97626866 97627172 + 1 NA Intergenic ERVL-E-int|LTR|ERVL 1118594 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 137.333-63 chr3 110021402 110021608 + 1 NA Intergenic Intergenic 418677 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 124.5-39 chr20 43462692 43462902 + 1 NA non-coding (NR_034009, exon 7 of 7) non-coding (NR_034009, exon 7 of 7) 4901 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 238.667-21 chr3 103934693 103935005 + 1 NA Intergenic L1MC|LINE|L1 -410733 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 129.667-77 chr4 105931349 105931615 + 1 NA intron (NM_001184692, intron 3 of 10) intron (NM_001184692, intron 3 of 10) 36011 NM_001184691 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 171.833-17 chr15 70890441 70890745 + 1 NA intron (NM_020147, intron 1 of 2) L2c|LINE|L2 1840 NM_020147 56906 Hs.591123 NM_020147 ENSG00000129028 THAP10 - THAP domain containing 10 protein-coding 227.5-25 chr4 114693657 114694030 + 1 NA Intergenic Intergenic 37084 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 129.667-103 chr8 80035555 80035705 + 1 NA non-coding (NR_105033, exon 9 of 9) non-coding (NR_105033, exon 9 of 9) -5371 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 232.5-2 chr1 233745076 233745493 + 1 NA Intergenic Intergenic 121132 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 227.5-8 chr12 21067480 21067852 + 1 NA intron (NM_001009562, intron 11 of 12) intron (NM_001009562, intron 11 of 12) 51970 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 220.333-17 chr20 55926659 55926947 + 1 NA Intergenic Intergenic 78716 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 271.667-17 chr6 133302588 133303008 + 1 NA intron (NM_172103, intron 2 of 18) intron (NM_172103, intron 2 of 18) 61299 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 175.5-47 chr4 163328036 163328245 + 1 NA intron (NM_000909, intron 1 of 2) intron (NM_000909, intron 1 of 2) 4456 NM_000909 4886 Hs.519057 NM_000909 ENSG00000164128 NPY1R NPY1-R|NPYR neuropeptide Y receptor Y1 protein-coding 186.333-9 chr10 5673296 5673490 + 1 NA Intergenic L1M5|LINE|L1 -6798 NM_024701 79754 Hs.445899 NM_024701 ENSG00000196372 ASB13 - ankyrin repeat and SOCS box containing 13 protein-coding 254.167-13 chr3 182401638 182402084 + 1 NA Intergenic L1MB5|LINE|L1 84501 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 156.5-11 chr10 31610366 31610550 + 1 NA Intergenic Intergenic -210703 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 345.5-5 chr2 238937734 238938244 + 1 NA Intergenic Intergenic -11720 NR_034162 401039 Hs.516791 NM_001001698 ENSG00000227744 LINC01940 - long intergenic non-protein coding RNA 1940 ncRNA 225.667-19 chr3 44245075 44245353 + 1 NA exon (NM_001145030, exon 2 of 20) exon (NM_001145030, exon 2 of 20) 3328 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 138.667-61 chr3 190356598 190356824 + 1 NA Intergenic Intergenic -31161 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 127.667-86 chr7 81884163 81884363 + 1 NA Intergenic Intergenic -114216 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 223.333-26 chr3 162559044 162559393 + 1 NA Intergenic (AATAT)n|Simple_repeat|Simple_repeat 744083 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 308.333-3 chr10 43273020 43273616 + 1 NA Intergenic L1ME3D|LINE|L1 -6253 NM_145313 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 219.667-11 chr16 25601104 25601385 + 1 NA Intergenic L1PA6|LINE|L1 -90715 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 155.667-58 chr4 128151132 128151309 + 1 NA intron (NR_146772, intron 11 of 19) L1MC4|LINE|L1 89908 NM_001278604 55132 Hs.654971 NM_018078 ENSG00000138709 LARP1B LARP2 La ribonucleoprotein domain family member 1B protein-coding 159.667-14 chr10 27518527 27518693 + 1 NA intron (NR_046172, intron 2 of 5) L1ME1|LINE|L1 14306 NR_046172 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 144.333-26 chr13 69964661 69964925 + 1 NA intron (NM_001286725, intron 1 of 9) L1M4a1|LINE|L1 -142420 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 151.333-25 chr13 33166980 33167178 + 1 NA intron (NM_178007, intron 2 of 13) intron (NM_178007, intron 2 of 13) 19012 NM_178007 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 299.5-10 chr5 36093475 36094034 + 1 NA Intergenic Intergenic -26872 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 172.333-10 chr10 55006147 55006349 + 1 NA intron (NM_001354404, intron 3 of 34) L1MA7|LINE|L1 -204957 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 276.5-16 chr8 79622827 79623201 + 1 NA intron (NM_007029, intron 1 of 4) LTR103b_Mam|LTR|ERV1? 11897 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 200.667 chr1 23404434 23404793 + 1 NA intron (NM_003196, intron 5 of 10).2 Charlie8|DNA|hAT-Charlie 20135 NM_003196 6920 Hs.446354 NM_003196 ENSG00000204219 TCEA3 TFIIS|TFIIS.H transcription elongation factor A3 protein-coding 310.5-7 chr13 41486066 41486589 + 1 NA Intergenic L1M1|LINE|L1 28777 NM_014059 28984 Hs.507866 NM_014059 ENSG00000102760 RGCC C13orf15|RGC-32|RGC32|bA157L14.2 regulator of cell cycle protein-coding 180.833-19 chr2 43125800 43126179 + 1 NA Intergenic Intergenic -23544 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 147.5-9 chr1 196069503 196069678 + 1 NA intron (NR_146895, intron 1 of 3) intron (NR_146895, intron 1 of 3) 19125 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 187.167-11 chr15 46475330 46475621 + 1 NA Intergenic Intergenic -708614 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 266.333-8 chr2 201340457 201340988 + 1 NA intron (NR_110620, intron 6 of 13) L1M1|LINE|L1 16623 NM_001127391 130540 Hs.107944 NM_139163 ENSG00000155749 FLACC1 ALS2CR12 flagellum associated containing coiled-coil domains 1 protein-coding 228.5-21 chr3 89315822 89316152 + 1 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 208366 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 124.167-11 chr10 100267824 100267948 + 1 NA promoter-TSS (NM_001303405) promoter-TSS (NM_001303405) -248 NM_001303406 55280 Hs.215502 NM_018294 ENSG00000095485 CWF19L1 C19L1|SCAR17|hDrn1 CWF19 like cell cycle control factor 1 protein-coding 214.667-44 chr9 100560369 100560826 + 1 NA intron (NM_001198812, intron 7 of 9) intron (NM_001198812, intron 7 of 9) -17482 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 170.333-15 chr11 68191726 68192022 + 1 NA intron (NR_161380, intron 1 of 10) Tigger3b|DNA|TcMar-Tigger 21422 NM_001369426 51111 Hs.632120 NM_016028 ENSG00000110066 KMT5B CGI-85|CGI85|MRD51|SUV420H1 lysine methyltransferase 5B protein-coding 322.167-11 chr8 72734555 72735227 + 1 NA intron (NR_110656, intron 1 of 2) intron (NR_110656, intron 1 of 2) 2846 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 289.833-2 chr16 77331475 77331999 + 1 NA intron (NM_199355, intron 12 of 22) MER20|DNA|hAT-Charlie 103297 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 199.333-40 chr8 38122114 38122509 + 1 NA intron (NM_004674, intron 10 of 15) L1MC4a|LINE|L1 16518 NM_001105214 9070 Hs.521530 NM_004674 ENSG00000129691 ASH2L ASH2|ASH2L1|ASH2L2|Bre2 ASH2 like, histone lysine methyltransferase complex subunit protein-coding 186.667-48 chr21 30416895 30417138 + 1 NA Intergenic PABL_A-int|LTR|ERV1 8910 NM_181622 337960 Hs.553687 NM_181622 ENSG00000240432 KRTAP13-3 KAP13.3 keratin associated protein 13-3 protein-coding 160.5-15 chr15 61746053 61746238 + 1 NA Intergenic Tigger19b|DNA|TcMar-Tigger 16227 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 225.5-17 chr14 40844531 40844921 + 1 NA Intergenic L1MEj|LINE|L1 -109985 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 212.333-34 chr7 3621852 3622551 + 1 NA intron (NM_152744, intron 2 of 44) AluSz|SINE|Alu 320949 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 218.667-44 chr8 24031997 24032549 + 1 NA Intergenic Intergenic -177467 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 245.833-7 chr18 41655344 41655678 + 1 NA Intergenic Intergenic -134834 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 214.333-34 chr4 169177049 169177455 + 1 NA intron (NM_020870, intron 2 of 11) intron (NM_020870, intron 2 of 11) 93704 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 114.333-86 chr3 87411476 87411681 + 1 NA Intergenic L1ME2|LINE|L1 -134994 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 185.333-41 chr3 146924121 146924580 + 1 NA non-coding (NR_135560, exon 3 of 3) non-coding (NR_135560, exon 3 of 3) 2427 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 197.5-33 chr3 47353570 47353784 + 1 NA Intergenic Intergenic -27344 NM_001304482 25930 Hs.25524 NM_015466 ENSG00000076201 PTPN23 HD-PTP|HDPTP|PTP-TD14 protein tyrosine phosphatase non-receptor type 23 protein-coding 222.5-21 chr4 43707110 43707411 + 1 NA Intergenic L1M2|LINE|L1 -214717 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 346.833-2 chr16 1321544 1322012 + 1 NA intron (NM_194261, intron 6 of 6) intron (NM_194261, intron 6 of 6) -11867 NM_001199099 8938 Hs.458427 NM_003933 ENSG00000007516 BAIAP3 BAP3 BAI1 associated protein 3 protein-coding 115.667-92 chr5 24626450 24626571 + 1 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 18468 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 318.833-2 chr10 26556769 26557273 + 1 NA intron (NM_019043, intron 11 of 14) intron (NM_019043, intron 11 of 14) 22286 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 241.5-17 chr20 53485855 53486345 + 1 NA intron (NM_173485, intron 2 of 2) L1MB3|LINE|L1 -66670 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 244.667-30 chr8 136368854 136369253 + 1 NA Intergenic L2a|LINE|L2 -161745 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 153.5-62 chr6 41009643 41009908 + 1 NA intron (NR_110873, intron 1 of 5) MIRb|SINE|MIR 13505 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 138.333-4 chr1 70656942 70657256 + 1 NA Intergenic Intergenic -49354 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 179.667-30 chr2 206756997 206757318 + 1 NA intron (NR_104261, intron 3 of 9) intron (NR_104261, intron 3 of 9) 8171 NM_001330223 130752 Hs.147816 NM_206892 ENSG00000138400 MDH1B RP11-95H11 malate dehydrogenase 1B protein-coding 122.167-15 chr12 71383173 71383305 + 1 NA Intergenic Intergenic -56559 NR_110596 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 168.333-35 chr3 24033076 24033380 + 1 NA Intergenic L1M2|LINE|L1 70019 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 134.667-12 chr10 75995498 75995738 + 1 NA intron (NR_131178, intron 3 of 7) MIRc|SINE|MIR 212857 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 118.333-80 chr4 48450047 48450185 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -33227 NM_152679 201780 Hs.132591 NM_152679 ENSG00000145248 SLC10A4 P4 solute carrier family 10 member 4 protein-coding 272.167-20 chr3 5723537 5723809 + 1 NA Intergenic AluSp|SINE|Alu -473418 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 318.333-2 chr14 43814504 43815046 + 1 NA Intergenic MER34B-int|LTR|ERV1 692508 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 117.5-48 chr4 33395353 33395502 + 1 NA Intergenic L1MA3|LINE|L1 644466 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 364.5-7 chr6 166046455 166047022 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR -50982 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 131.333-20 chr12 42979024 42979253 + 1 NA Intergenic Intergenic -176177 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 119.333-18 chr11 97082508 97082633 + 1 NA Intergenic Intergenic 574145 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 134.667-80 chr5 15698114 15698455 + 1 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -83282 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 130.333-16 chr11 4695566 4695822 + 1 NA intron (NM_030774, intron 1 of 1) L2c|LINE|L2 2159 NM_030774 81285 Hs.501758 NM_030774 ENSG00000167332 OR51E2 HPRAJ|OR51E3P|OR52A2|PSGR olfactory receptor family 51 subfamily E member 2 protein-coding 133.5-12 chr10 44638868 44639024 + 1 NA Intergenic L1MEg|LINE|L1 -253849 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 230.833-17 chr3 154490390 154490650 + 1 NA Intergenic L1PA8|LINE|L1 -60330 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 198.167-20 chr20 55684828 55685095 + 1 NA Intergenic MER74B|LTR|ERVL -257764 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 231.5-16 chr4 28610521 28610930 + 1 NA Intergenic Intergenic -208857 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 189.667-53 chr9 34311417 34311657 + 1 NA intron (NM_194313, intron 1 of 12) intron (NM_194313, intron 1 of 12) 17731 NM_194313 347240 Hs.710246 NM_194313 ENSG00000186638 KIF24 C9orf48|bA571F15.4 kinesin family member 24 protein-coding 175.667-54 chr5 66373961 66374254 + 1 NA Intergenic HAL1b|LINE|L1 137497 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 194.333-12 chr14 63818436 63818651 + 1 NA Intergenic L1ME1|LINE|L1 -34422 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 200.167-26 chr2 66735835 66736127 + 1 NA Intergenic Intergenic -32754 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 164.5-27 chr18 1497438 1497721 + 1 NA Intergenic L1PA17|LINE|L1 -137950 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 220.5-37 chr8 88881827 88882265 + 1 NA Intergenic Intergenic -554563 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 140.333-2 chr1 49860057 49860197 + 1 NA intron (NM_001323575, intron 1 of 12) L1M5|LINE|L1 163827 NM_001323573 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 128.667-45 chr15 70655798 70656005 + 1 NA 3' UTR (NM_001008224, exon 19 of 19) 3' UTR (NM_001008224, exon 19 of 19) 20652 NR_126482 104548973 NR_126482 ENSG00000280515 SALRNA2 SAL-RNA2|XLOC_025931 senescence associated long non-coding RNA 2 ncRNA 273.833-8 chr4 59513127 59513516 + 1 NA Intergenic Intergenic 499748 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 146.167-55 chr5 94065057 94065317 + 1 NA intron (NM_001163418, intron 1 of 8) L1MA3|LINE|L1 46476 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 239.667-32 chr8 110038232 110038674 + 1 NA Intergenic L2|LINE|L2 -62682 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 166.5-25 chr17 58971948 58972381 + 1 NA non-coding (NR_048561, exon 4 of 6) non-coding (NR_048561, exon 4 of 6) 134716 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 281.667-2 chr10 29042629 29042983 + 1 NA Intergenic L1M4|LINE|L1 196398 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 135.333-42 chr2 143103014 143103278 + 1 NA Intergenic MamRep1151|LTR?|LTR? -26273 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 588.167 chr2 104616329 104617482 + 1 NA Intergenic Intergenic -106396 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 116.167-64 chr5 122684279 122684491 + 1 NA intron (NR_109881, intron 8 of 11) intron (NR_109881, intron 8 of 11) 46175 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 133.333-10 chr10 22182258 22182531 + 1 NA Intergenic L2a|LINE|L2 27589 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 256.5-4 chr11 68196340 68196718 + 1 NA intron (NR_161380, intron 1 of 10) intron (NR_161380, intron 1 of 10) 16767 NM_001369426 51111 Hs.632120 NM_016028 ENSG00000110066 KMT5B CGI-85|CGI85|MRD51|SUV420H1 lysine methyltransferase 5B protein-coding 181.667-16 chr16 62328308 62328521 + 1 NA Intergenic Intergenic -291976 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 244.333-10 chr15 62637298 62637795 + 1 NA non-coding (NR_026897, exon 3 of 3) non-coding (NR_026897, exon 3 of 3) 7635 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 194.5-21 chr20 22145190 22145552 + 1 NA Intergenic Intergenic 91281 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 148.167-59 chr5 10786987 10787355 + 1 NA Intergenic Intergenic -25937 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 152.333-4 chr1 217522905 217523092 + 1 NA intron (NM_018040, intron 5 of 9) intron (NM_018040, intron 5 of 9) 108092 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 444.167-5 chr8 117103967 117104691 + 1 NA intron (NM_001172815, intron 2 of 10) MLT1C-int|LTR|ERVL-MaLR -30666 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 317.167-9 chr3 34986771 34987461 + 1 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 406907 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 227.833-14 chr4 33581973 33582327 + 1 NA Intergenic L1MEc|LINE|L1 457743 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 232.333-2 chr1 98752561 98753058 + 1 NA intron (NM_015976, intron 8 of 8) Charlie2b|DNA|hAT-Charlie 91088 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 207.333-34 chr3 95472573 95472896 + 1 NA Intergenic MER101-int|LTR|ERV1 210459 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 286.833-3 chr2 185612708 185613043 + 1 NA Intergenic L1MB1|LINE|L1 125844 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 119.667-99 chr8 89517497 89517711 + 1 NA Intergenic Tigger2a|DNA|TcMar-Tigger 240107 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 158.667-4 chr1 151257494 151257674 + 1 NA intron (NM_001330692, intron 1 of 9) AluSz6|SINE|Alu 2850 NM_002810 5710 Hs.505059 NM_002810 ENSG00000159352 PSMD4 AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5 proteasome 26S subunit, non-ATPase 4 protein-coding 240.667-36 chr5 146356016 146356409 + 1 NA Intergenic L2b|LINE|L2 17373 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 298.5-16 chr5 9679756 9680521 + 1 NA intron (NR_027112, intron 9 of 12) L1MC3|LINE|L1 -49787 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 144.333-85 chr8 55878264 55878485 + 1 NA Intergenic Intergenic -1461 NM_001111097 4067 Hs.491767 NM_002350 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 229.333-8 chr12 57441572 57441821 + 1 NA intron (NM_005538, intron 1 of 1) AluSx1|SINE|Alu 6912 NM_005538 3626 Hs.632722 NM_005538 ENSG00000175189 INHBC IHBC inhibin subunit beta C protein-coding 276.667-4 chr3 47202351 47202721 + 1 NA intron (NR_033373, intron 2 of 6) AluJb|SINE|Alu 38166 NR_033373 285352 Hs.570631 NR_033373 KIF9-AS1 - KIF9 antisense RNA 1 ncRNA 162.333-8 chr10 29800504 29800848 + 1 NA Intergenic MSTA-int|LTR|ERVL-MaLR -63740 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 167.333-31 chr2 43287026 43287247 + 1 NA intron (NM_001083953, intron 34 of 37) intron (NM_001083953, intron 34 of 37) 59925 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 160.333-27 chr2 66686083 66686338 + 1 NA intron (NR_110156, intron 4 of 5) intron (NR_110156, intron 4 of 5) 17017 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 247.167-13 chr20 41532668 41533014 + 1 NA intron (NM_032221, intron 3 of 36) intron (NM_032221, intron 3 of 36) 85536 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 271.667-13 chr5 31763906 31764355 + 1 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 124999 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 180.667-28 chr15 71150825 71151023 + 1 NA intron (NM_024817, intron 1 of 16) L2a|LINE|L2 9475 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 178.833-24 chr20 42913194 42913538 + 1 NA intron (NM_133170, intron 1 of 31) MLT1C|LTR|ERVL-MaLR -55377 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 275.333-6 chr10 85560439 85560781 + 1 NA Intergenic L1ME3Cz|LINE|L1 -17121 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 127.667-83 chr6 141641842 141642128 + 1 NA Intergenic Intergenic 446814 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 123.5-15 chr11 26160783 26160960 + 1 NA Intergenic Intergenic -28252 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 182.667-58 chr7 135351752 135351965 + 1 NA Intergenic L1M5|LINE|L1 119879 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 215.333-52 chr8 88943615 88943897 + 1 NA Intergenic Intergenic -616273 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 288.333-13 chr6 148130885 148131472 + 1 NA Intergenic Intergenic -141150 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 338.667-5 chr7 19925813 19926259 + 1 NA intron (NR_110114, intron 5 of 5) intron (NR_110114, intron 5 of 5) -152419 NM_001366628 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 260.5-27 chr8 66778824 66779227 + 1 NA intron (NM_013257, intron 1 of 16) intron (NM_013257, intron 1 of 16) 3820 NM_170709 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 169.333-35 chr2 74966766 74967102 + 1 NA intron (NM_019896, intron 3 of 3) L1ME3B|LINE|L1 8291 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 218.333-35 chr8 118774063 118774452 + 1 NA Intergenic Intergenic -152294 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 153.5-59 chr5 146884651 146884891 + 1 NA intron (NM_001271900, intron 2 of 10) intron (NM_001271900, intron 2 of 10) -5844 NR_073527 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 235.667-7 chr16 9998816 9999062 + 1 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 183128 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 210.833-26 chr6 13690328 13690557 + 1 NA intron (NM_005493, intron 2 of 13) intron (NM_005493, intron 2 of 13) 21393 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 140.667-90 chr8 131758633 131758828 + 1 NA Intergenic AluSx1|SINE|Alu -145363 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 388.5-2 chr22 41347806 41348453 + 1 NA exon (NM_017590, exon 15 of 23) exon (NM_017590, exon 15 of 23) -19204 NM_001145398 7008 Hs.181159 NM_003216 ENSG00000167074 TEF - TEF transcription factor, PAR bZIP family member protein-coding 282.333-5 chr14 59222463 59223046 + 1 NA intron (NM_001270520, intron 1 of 24) ERVL-int|LTR|ERVL 34087 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 151.667-68 chr5 117879006 117879200 + 1 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 148742 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 140.5-58 chr5 26579118 26579287 + 1 NA Intergenic Tigger4|DNA|TcMar-Tigger 459384 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 153.5-33 chr2 67087171 67087417 + 1 NA intron (NR_110564, intron 1 of 4) intron (NR_110564, intron 1 of 4) 848 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 133.167-38 chr22 37622396 37622582 + 1 NA intron (NM_001001560, intron 7 of 14) AluJo|SINE|Alu 13449 NM_001172688 26088 Hs.499158 NM_013365 ENSG00000100083 GGA1 - golgi associated, gamma adaptin ear containing, ARF binding protein 1 protein-coding 169.833-40 chr8 137212532 137212925 + 1 NA Intergenic Intergenic 200860 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 233.667-5 chr12 26789173 26789641 + 1 NA intron (NM_002223, intron 2 of 56) intron (NM_002223, intron 2 of 56) 43787 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 227.5-9 chr14 59548203 59548601 + 1 NA intron (NM_001164399, intron 8 of 19) LTR84b|LTR|ERVL 28410 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 200.5-50 chrX 53362061 53362663 + 1 NA Intergenic Intergenic -41012 NM_001111125 23096 Hs.496138 NM_015075 ENSG00000124313 IQSEC2 BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78 IQ motif and Sec7 domain 2 protein-coding 183.667-4 chr1 65246201 65246484 + 1 NA Intergenic MER3|DNA|hAT-Charlie -18352 NM_001256865 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 140.167-70 chr8 104217988 104218136 + 1 NA intron (NM_001348498, intron 20 of 24) intron (NM_001348498, intron 20 of 24) -5273 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 186.5-57 chr6 40484405 40484664 + 1 NA intron (NM_020737, intron 1 of 2) MER5A1|DNA|hAT-Charlie 102830 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 305.667-10 chr3 75048774 75049296 + 1 NA Intergenic Intergenic -165441 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 179.667-36 chr3 94214445 94214735 + 1 NA Intergenic L2|LINE|L2 151529 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 160.333-15 chr14 71378352 71378580 + 1 NA intron (NM_001354285, intron 2 of 24) L1M5|LINE|L1 -19871 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 241.333-32 chrX 81929059 81929523 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR 727189 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 205.333-2 chr1 54539058 54539472 + 1 NA Intergenic L1ME1|LINE|L1 -8963 NM_015547 26027 Hs.745173 NM_015547 ENSG00000162390 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 164.333-79 chr7 123192762 123192946 + 1 NA intron (NM_001324400, intron 1 of 17) intron (NM_001324400, intron 1 of 17) 7115 NM_022444 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 148.167-54 chr3 187636686 187636997 + 1 NA Intergenic Intergenic 33553 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 313.333-10 chr7 46581024 46581395 + 1 NA Intergenic Intergenic 115913 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 215.667-31 chr3 159802307 159802644 + 1 NA intron (NM_001197113, intron 5 of 10) intron (NM_001197113, intron 5 of 10) -33863 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 114.667-8 chr1 200423900 200424026 + 1 NA Intergenic AluSg4|SINE|Alu -13927 NM_012482 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 237.667-19 chr8 66633807 66634152 + 1 NA 3' UTR (NM_025054, exon 3 of 3) 3' UTR (NM_025054, exon 3 of 3) -20761 NM_001144755 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 171.667-20 chr14 32069495 32069728 + 1 NA Intergenic Intergenic 7088 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 240.5-21 chr6 131858339 131858760 + 1 NA intron (NM_006208, intron 6 of 24) intron (NM_006208, intron 6 of 24) 50529 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 244.333-5 chr12 24376100 24376414 + 1 NA intron (NM_152989, intron 2 of 17) MIR1_Amn|SINE|MIR 152986 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 254.167 chr1 33451559 33452215 + 1 NA Intergenic Intergenic -20758 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 186.667-3 chr1 108840649 108840969 + 1 NA intron (NM_152763, intron 6 of 15) intron (NM_152763, intron 6 of 15) 16285 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 168.667-5 chr10 90640878 90641193 + 1 NA Intergenic MIR|SINE|MIR -100230 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 204.5-33 chr5 106673057 106673411 + 1 NA Intergenic MIRb|SINE|MIR 337780 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 358.5-2 chr2 38525587 38526035 + 1 NA Intergenic L1MC5a|LINE|L1 -10071 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 186.667-57 chr3 197970874 197971097 + 1 NA intron (NM_033029, intron 1 of 15) L1MEf|LINE|L1 10768 NR_026787 89782 Hs.518540 NM_033029 ENSG00000185621 LMLN GP63|INV|IX14|LMNL1|MSP leishmanolysin like peptidase protein-coding 231.333-12 chr13 35406720 35406951 + 1 NA intron (NM_015678, intron 38 of 57) intron (NM_015678, intron 38 of 57) 69854 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 272.667-18 chr7 83578911 83579383 + 1 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 62284 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 142.333-5 chr1 105529791 105530016 + 1 NA Intergenic L1MB3|LINE|L1 89032 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 259.333-3 chr11 103268759 103269240 + 1 NA intron (NM_001377, intron 70 of 88) intron (NM_001377, intron 70 of 88) 159573 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 121.167-30 chr16 20017746 20018018 + 1 NA Intergenic AluSx|SINE|Alu 55896 NM_001002911 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 279.5-6 chr4 76758958 76759386 + 1 NA intron (NM_020859, intron 8 of 10) intron (NM_020859, intron 8 of 10) 138972 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 145.333-93 chr8 125337094 125337356 + 1 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -93133 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 204.5-16 chr15 67417936 67418260 + 1 NA intron (NM_001031715, intron 15 of 20) MIR|SINE|MIR 102875 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 162.833-54 chr9 82224419 82224850 + 1 NA Intergenic Intergenic 235862 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 174.333-49 chr5 156009036 156009429 + 1 NA Intergenic Intergenic -317525 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 256.167-2 chr10 30813729 30814108 + 1 NA Intergenic MER5A1|DNA|hAT-Charlie 90699 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 285.667-6 chr4 64687643 64688131 + 1 NA Intergenic Intergenic -278427 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 134.667-98 chr7 29391509 29391713 + 1 NA intron (NM_001293072, intron 3 of 12) intron (NM_001293072, intron 3 of 12) -88101 NM_001293079 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 132.333-9 chr1 221228514 221228689 + 1 NA Intergenic Intergenic 107695 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 165.167-27 chr2 193817129 193817370 + 1 NA Intergenic MIRb|SINE|MIR -527020 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 237.833-23 chr8 123852570 123852986 + 1 NA intron (NM_001039112, intron 1 of 40) L1MD3|LINE|L1 791 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 259.667-17 chr3 32771180 32771596 + 1 NA intron (NM_001256741, intron 17 of 17) AluSz|SINE|Alu -46609 NM_001039111 131405 Hs.113170 NM_001039111 ENSG00000206557 TRIM71 LIN-41|LIN41 tripartite motif containing 71 protein-coding 138.667-34 chr15 64417020 64417175 + 1 NA intron (NM_001321924, intron 8 of 12) AluJb|SINE|Alu 29261 NM_016213 9325 Hs.500340 NM_016213 ENSG00000103671 TRIP4 ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5 thyroid hormone receptor interactor 4 protein-coding 194.667-19 chr12 68151836 68152151 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR 7747 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 117.5-51 chr4 66059007 66059215 + 1 NA Intergenic Intergenic -217713 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 124.667-122 chr8 87279431 87279580 + 1 NA intron (NM_173538, intron 6 of 10) L1MEg|LINE|L1 413090 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 147.667-67 chr8 20143212 20143409 + 1 NA Intergenic Intergenic 39826 NM_001142324 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 162.5-46 chr3 80271969 80272191 + 1 NA Intergenic GA-rich|Low_complexity|Low_complexity -492817 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 119.333-108 chr8 66040792 66041040 + 1 NA intron (NM_033105, intron 1 of 5) intron (NM_033105, intron 1 of 5) 19363 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 118.333-41 chr16 57254448 57254621 + 1 NA TTS (NM_012106) TTS (NM_012106) 9275 NM_012106 23568 Hs.632873 NM_012106 ENSG00000102931 ARL2BP BART|BART1|RP66 ADP ribosylation factor like GTPase 2 binding protein protein-coding 288.333-2 chr15 76233729 76234224 + 1 NA intron (NM_000126, intron 9 of 11) intron (NM_000126, intron 9 of 11) 26176 NR_028510 7302 Hs.684881 NR_002721 TYRO3P - TYRO3P protein tyrosine kinase pseudogene pseudo 161.667-49 chr22 28151565 28151739 + 1 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -231040 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 177.833-15 chr17 40580370 40580723 + 1 NA Intergenic AluJb|SINE|Alu -15074 NM_001838 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 204.667-37 chr4 64851124 64851559 + 1 NA Intergenic Intergenic 153159 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 403.667-2 chr21 30890096 30890729 + 1 NA Intergenic Intergenic -8832 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 221.833-25 chr7 23171681 23172211 + 1 NA intron (NM_001031710, intron 9 of 10) AluY|SINE|Alu -10102 NM_001370446 11097 Hs.408241 NM_007342 ENSG00000136243 NUP42 CG1|NLP-1|NLP_1|NUPL2|hCG1 nucleoporin 42 protein-coding 230.333-38 chr8 140735174 140735584 + 1 NA exon (NM_001316342, exon 22 of 33) exon (NM_001316342, exon 22 of 33) -2726 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 218.833-26 chr7 25091554 25091872 + 1 NA Intergenic Intergenic 33648 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 138.5-80 chr8 117039756 117040090 + 1 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) 88948 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 233.5-9 chr16 78965810 78966240 + 1 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 634712 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 192.5-40 chr5 26987373 26987763 + 1 NA intron (NM_016279, intron 2 of 11) intron (NM_016279, intron 2 of 11) 51018 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 181.667-43 chr4 40477669 40477991 + 1 NA intron (NM_001098634, intron 2 of 6) intron (NM_001098634, intron 2 of 6) 24289 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 163.667-65 chr5 146883273 146883619 + 1 NA intron (NM_001271900, intron 2 of 10) intron (NM_001271900, intron 2 of 10) -4519 NR_073527 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 142.667-8 chr10 17210539 17210737 + 1 NA Intergenic Intergenic -8567 NM_001351223 1787 Hs.351665 NM_004412 ENSG00000107614 TRDMT1 DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1 tRNA aspartic acid methyltransferase 1 protein-coding 138.333-43 chr16 64046885 64047119 + 1 NA Intergenic Intergenic 1075061 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 231.167-17 chr3 135986889 135987163 + 1 NA intron (NM_001190447, intron 1 of 12) L2a|LINE|L2 21298 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 141.167-58 chr5 63694898 63695271 + 1 NA Intergenic Intergenic 267208 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 174.5-60 chrX 77908033 77908260 + 1 NA TTS (NM_001866) TTS (NM_001866) -2510 NM_001282224 538 Hs.496414 NM_000052 ENSG00000165240 ATP7A DSMAX|MK|MNK|SMAX3 ATPase copper transporting alpha protein-coding 128.333-27 chr12 127766992 127767127 + 1 NA Intergenic MER90|LTR|ERV1 -111471 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 168.5-8 chr10 25525064 25525509 + 1 NA intron (NM_020752, intron 5 of 10) L1MB8|LINE|L1 -126426 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 142.333-8 chr1 169781558 169781803 + 1 NA Intergenic MER4D|LTR|ERV1 13009 NM_001320201 92342 Hs.33922 NM_033418 ENSG00000171806 METTL18 AsTP2|C1orf156|HPM1 methyltransferase like 18 protein-coding 258.167 chr12 8463226 8463493 + 1 NA intron (NM_001007033, intron 3 of 5) Charlie2a|DNA|hAT-Charlie 7397 NM_001317999 93978 Hs.591147 NM_001007033 ENSG00000205846 CLEC6A CLEC4N|CLECSF10|dectin-2 C-type lectin domain containing 6A protein-coding 163.333-13 chr10 89519948 89520283 + 1 NA intron (NM_213606, intron 2 of 7) AluSg|SINE|Alu 15479 NM_213606 387700 Hs.530338 NM_213606 ENSG00000152779 SLC16A12 CJMG|CRT2|CTRCT47|MCT12 solute carrier family 16 member 12 protein-coding 322.667-5 chr6 133511168 133511638 + 1 NA intron (NR_109982, intron 6 of 8) intron (NR_109982, intron 6 of 8) 269904 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 278.333-5 chr12 100124320 100124665 + 1 NA intron (NM_001006947, intron 1 of 12) AluSx3|SINE|Alu 18382 NM_001006947 23074 Hs.572154 NM_015054 ENSG00000111647 UHRF1BP1L SHIP164 UHRF1 binding protein 1 like protein-coding 357.333-8 chr8 29754754 29755431 + 1 NA intron (NR_125815, intron 1 of 3) L1ME4a|LINE|L1 6783 NR_125815 101929450 Hs.512440 NR_125814 ENSG00000253490 LINC02099 - long intergenic non-protein coding RNA 2099 ncRNA 351.667-3 chr11 65984874 65985376 + 1 NA Intergenic AluJr|SINE|Alu -16954 NM_001143985 8815 Hs.433759 NM_003860 ENSG00000175334 BANF1 BAF|BCRP1|D14S1460|NGPS barrier to autointegration factor 1 protein-coding 219.5-38 chr6 154274463 154275159 + 1 NA intron (NM_015553, intron 2 of 11) FordPrefect_a|DNA|hAT-Tip100 55270 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 195.5-18 chr15 68289995 68290349 + 1 NA exon (NM_015322, exon 2 of 2) exon (NM_015322, exon 2 of 2) 12427 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 232.333-34 chr7 88165281 88165753 + 1 NA intron (NM_001324421, intron 23 of 28) intron (NM_001324421, intron 23 of 28) -51143 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 168.667-74 chr7 101188908 101189159 + 1 NA Intergenic AluSg|SINE|Alu -8740 NM_001369694 375607 Hs.213044 NM_198571 ENSG00000167011 NAT16 C7orf52 N-acetyltransferase 16 (putative) protein-coding 232.5-9 chr14 55607296 55607596 + 1 NA intron (NR_073129, intron 2 of 45) Charlie4z|DNA|hAT-Charlie 27239 NM_001271014 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 224.333-33 chr8 18363235 18363490 + 1 NA Intergenic MER39B|LTR|ERV1 -27920 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 181.833-22 chr2 51831661 51832031 + 1 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -538802 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 231.167-14 chr20 40722457 40722749 + 1 NA Intergenic L1MC4|LINE|L1 -7980 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 121.5-96 chr7 27153873 27154045 + 1 NA non-coding (NR_038832, exon 3 of 3) non-coding (NR_038832, exon 3 of 3) 2716 NM_006896 3204 Hs.660918 NM_006896 ENSG00000122592 HOXA7 ANTP|HOX1|HOX1.1|HOX1A homeobox A7 protein-coding 159.667-79 chr6 115055329 115055615 + 1 NA Intergenic Intergenic 588363 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 178.667-72 chr8 125605527 125605750 + 1 NA Intergenic MER4D|LTR|ERV1 173429 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 140.667-20 chr12 126544894 126545215 + 1 NA Intergenic L1MB8|LINE|L1 -95727 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 194.667-65 chr8 119099421 119099832 + 1 NA intron (NM_001324095, intron 5 of 7) intron (NM_001324095, intron 5 of 7) -30844 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 147.5-27 chr14 63795694 63795983 + 1 NA Intergenic L1ME1|LINE|L1 -57127 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 120.667-77 chr3 15429716 15429867 + 1 NA intron (NM_033083, intron 1 of 5) intron (NM_033083, intron 1 of 5) 2193 NM_033083 85403 Hs.716733 NM_033083 ENSG00000144597 EAF1 - ELL associated factor 1 protein-coding 192.333-50 chr7 43513604 43513931 + 1 NA intron (NR_038276, intron 1 of 2) intron (NR_038276, intron 1 of 2) 8775 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 197.667-42 chr3 195113114 195113467 + 1 NA intron (NM_152531, intron 3 of 3) intron (NM_152531, intron 3 of 3) 18702 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 246.167-27 chr6 162267013 162267504 + 1 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -459874 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 177.333-30 chr2 10097978 10098159 + 1 NA Intergenic Intergenic -17657 NM_001037160 192668 Hs.27092 NM_001037160 ENSG00000205795 CYS1 - cystin 1 protein-coding 264.333-11 chr4 102182305 102182624 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR 141848 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 241.833-17 chr6 146961327 146961732 + 1 NA intron (NR_034115, intron 7 of 10) L1PB4|LINE|L1 -157705 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 143.5-41 chr2 128537094 128537246 + 1 NA Intergenic LTR49-int|LTR|ERV1 -218302 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 136.667-45 chr2 132405567 132405859 + 1 NA Intergenic L1MA9|LINE|L1 -11092 NM_001508 2863 Hs.432395 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 131.667-14 chr10 69593924 69594198 + 1 NA Intergenic Intergenic -20639 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 177.5-30 chr16 72349795 72350136 + 1 NA intron (NR_126330, intron 8 of 13) intron (NR_126330, intron 8 of 13) -177515 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 155.5-31 chr2 108070107 108070367 + 1 NA Intergenic Intergenic -17482 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 118.5-60 chr20 48932046 48932198 + 1 NA intron (NM_006420, intron 1 of 38) L2a|LINE|L2 10411 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 205.667-58 chr8 80533974 80534262 + 1 NA Intergenic Intergenic 47892 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 362.333-3 chr20 17093618 17094033 + 1 NA Intergenic Intergenic -132282 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 178.667-2 chr1 71897905 71898157 + 1 NA intron (NM_173808, intron 2 of 6) intron (NM_173808, intron 2 of 6) -61019 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 223.5-26 chr5 147937445 147937687 + 1 NA Intergenic L1M1|LINE|L1 -31028 NM_206966 389336 Hs.660038 NM_206966 ENSG00000178776 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 128.5-62 chr5 102542659 102542907 + 1 NA Intergenic Intergenic -38585 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 161.667-28 chr12 88357073 88357290 + 1 NA Intergenic Intergenic 214874 NM_001366580 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 180.667-43 chr20 59229993 59230367 + 1 NA intron (NM_178457, intron 3 of 4) MER58B|DNA|hAT-Charlie 39160 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 194.833-3 chr1 222363228 222363562 + 1 NA Intergenic Intergenic 184709 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 127.5-40 chr21 27130601 27130765 + 1 NA Intergenic Intergenic -163595 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 296.333-11 chr5 106041224 106041861 + 1 NA Intergenic L1MB5|LINE|L1 942068 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 189.667-13 chr13 66595847 66596217 + 1 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) -229137 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 243.667-3 chr1 102548254 102548617 + 1 NA Intergenic Intergenic -551201 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 134.5-39 chr2 20168535 20168801 + 1 NA Intergenic Intergenic 56462 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 198.333-43 chr8 88954231 88954511 + 1 NA Intergenic L1PA16|LINE|L1 -626888 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 336.667-4 chr3 45738179 45738734 + 1 NA intron (NM_001319071, intron 16 of 19) intron (NM_001319071, intron 16 of 19) 49060 NM_001319072 22908 Hs.156509 NM_014016 ENSG00000211456 SACM1L SAC1 SAC1 like phosphatidylinositide phosphatase protein-coding 232.5-19 chr2 205008255 205008769 + 1 NA intron (NM_205863, intron 3 of 21) intron (NM_205863, intron 3 of 21) 463037 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 239.333-21 chr7 99539316 99539672 + 1 NA Intergenic Intergenic 12620 NM_145111 221786 Hs.596587 NM_145111 ENSG00000221909 FAM200A C7orf38 family with sequence similarity 200 member A protein-coding 133.333-72 chr3 4898141 4898635 + 1 NA non-coding (NR_125914, exon 3 of 3) non-coding (NR_125914, exon 3 of 3) 8113 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 301.5 chr1 112364400 112364958 + 1 NA Intergenic L1ME1|LINE|L1 -31535 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 115.333-45 chr18 33985969 33986143 + 1 NA intron (NM_001353232, intron 6 of 9) intron (NM_001353232, intron 6 of 9) 62556 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 165.333-21 chr14 81797715 81797904 + 1 NA Intergenic Intergenic -54671 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 243.333-21 chr8 57490213 57490552 + 1 NA Intergenic Intergenic 146595 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 219.667-17 chr20 39193856 39194110 + 1 NA Intergenic MER44C|DNA|TcMar-Tigger 30765 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 283.667-7 chr12 106280036 106280361 + 1 NA Intergenic Intergenic -22535 NM_152772 255394 Hs.696047 NM_152772 ENSG00000166046 TCP11L2 - t-complex 11 like 2 protein-coding 201.5-10 chr14 53948561 53948939 + 1 NA promoter-TSS (NR_049843) promoter-TSS (NR_049843) -266 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 150.5-35 chr17 62599867 62600125 + 1 NA intron (NM_001284363, intron 15 of 19) intron (NM_001284363, intron 15 of 19) -27674 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 151.667-7 chr10 22968130 22968323 + 1 NA intron (NM_001282745, intron 7 of 18) intron (NM_001282745, intron 7 of 18) 40173 NM_001282746 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 196.333-39 chr5 41989535 41989851 + 1 NA Intergenic Intergenic 64412 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 209.5-42 chr9 101428570 101428844 + 1 NA intron (NM_000035, intron 3 of 8) intron (NM_000035, intron 3 of 8) 7067 NM_000035 229 Hs.530274 NM_000035 ENSG00000136872 ALDOB ALDB|ALDO2 aldolase, fructose-bisphosphate B protein-coding 140.833-7 chr10 67966003 67966180 + 1 NA intron (NM_001278185, intron 16 of 23) AluSx|SINE|Alu 44792 NR_131184 100009667 NR_131184 POU5F1P5 Oct4-pg5 POU class 5 homeobox 1 pseudogene 5 pseudo 129.667-31 chr14 44298543 44298732 + 1 NA Intergenic (GT)n|Simple_repeat|Simple_repeat 208646 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 147.333-25 chr14 57688062 57688307 + 1 NA intron (NM_001352014, intron 1 of 9) GA-rich|Low_complexity|Low_complexity 176815 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 144.833-35 chr2 217502723 217503147 + 1 NA intron (NR_026597, intron 2 of 12) L1MC4|LINE|L1 220202 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 166.333-57 chr4 91880279 91880613 + 1 NA Intergenic L1MEd|LINE|L1 396856 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 259.167-17 chr8 22454904 22455393 + 1 NA intron (NM_005605, intron 1 of 13) intron (NM_005605, intron 1 of 13) 14178 NM_001243975 5533 Hs.731683 NM_005605 ENSG00000120910 PPP3CC CALNA3|CNA3|PP2Bgamma protein phosphatase 3 catalytic subunit gamma protein-coding 264.667-12 chr16 85343174 85343724 + 1 NA Intergenic L1MD2|LINE|L1 -37124 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 114.5-63 chr3 37041263 37041428 + 1 NA intron (NM_001167617, intron 14 of 18) intron (NM_001167617, intron 14 of 18) 47995 NM_001354627 4292 Hs.195364 NM_000249 ENSG00000076242 MLH1 COCA2|FCC2|HNPCC|HNPCC2|hMLH1 mutL homolog 1 protein-coding 248.833-12 chr7 2424080 2424473 + 1 NA intron (NM_018641, intron 1 of 1) AluJo|SINE|Alu 20665 NM_001243795 55501 Hs.288853 NM_018641 ENSG00000136213 CHST12 C4S-2|C4ST-2|C4ST2 carbohydrate sulfotransferase 12 protein-coding 198.5-43 chr9 32402344 32402844 + 1 NA intron (NM_001278352, intron 2 of 21) intron (NM_001278352, intron 2 of 21) 17951 NM_001362840 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 160.167-23 chr17 58160968 58161163 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR 4106 NR_002307 55545 Hs.381329 NR_002307 MSX2P1 HPX5|HSHPX5|MSX2P msh homeobox 2 pseudogene 1 pseudo 174.5-15 chr15 83833475 83833813 + 1 NA intron (NM_207517, intron 6 of 29) intron (NM_207517, intron 6 of 29) 179521 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 197.333-13 chr14 37385366 37385643 + 1 NA intron (NM_138731, intron 11 of 13) intron (NM_138731, intron 11 of 13) 187567 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 129.833-27 chr16 87673667 87673981 + 1 NA intron (NM_020655, intron 2 of 4) AluSx1|SINE|Alu 71316 NM_020655 57338 Hs.592068 NM_020655 ENSG00000154118 JPH3 CAGL237|HDL2|JP-3|JP3|TNRC22 junctophilin 3 protein-coding 152.5-33 chr21 25193734 25193899 + 1 NA Intergenic Intergenic 237885 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 179.333-12 chr12 5300460 5300667 + 1 NA Intergenic Intergenic -57412 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 164.333-18 chr12 129585303 129585546 + 1 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 318601 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 247.167-7 chr17 48328288 48328813 + 1 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) 34203 NR_131240 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 244.667-25 chr7 36318869 36319142 + 1 NA Intergenic Intergenic 48235 NM_001300956 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 180.667-56 chr4 168551314 168551597 + 1 NA intron (NM_001166108, intron 2 of 21) intron (NM_001166108, intron 2 of 21) 54403 NM_016081 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 234.333-7 chr10 112233183 112233627 + 1 NA Intergenic Intergenic -49640 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 198.667-35 chr3 2640961 2641199 + 1 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -251135 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 123.667-68 chr3 49126609 49126889 + 1 NA intron (NM_002292, intron 15 of 31) intron (NM_002292, intron 15 of 31) -5811 NM_001351102 10869 Hs.255596 NM_006677 ENSG00000172046 USP19 ZMYND9 ubiquitin specific peptidase 19 protein-coding 235.5-35 chr8 131460117 131460431 + 1 NA Intergenic Intergenic -419365 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 251.333-4 chr10 96335560 96336055 + 1 NA intron (NM_001017520, intron 9 of 10) intron (NM_001017520, intron 9 of 10) 21352 NM_001284326 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 244.333-12 chr18 22320905 22321203 + 1 NA Intergenic L2b|LINE|L2 96861 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 229.333-10 chr12 119083855 119084095 + 1 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 92509 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 116.667-28 chr13 68479599 68479761 + 1 NA Intergenic Intergenic 405645 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 192.333-23 chr2 70153258 70153562 + 1 NA intron (NR_145968, intron 9 of 10) AluY|SINE|Alu -28094 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 172.833 chr1 44165498 44165793 + 1 NA Intergenic L1MC4|LINE|L1 -24014 NM_001358438 105378952 NM_001358438 ENSG00000283039 KLF18 - Kruppel like factor 18 protein-coding 148.667-13 chr12 15617469 15617730 + 1 NA Intergenic L1MEc|LINE|L1 70988 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 208.667-7 chr10 28596112 28596395 + 1 NA intron (NM_100264, intron 7 of 13) intron (NM_100264, intron 7 of 13) 63135 NM_100486 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 239.5-2 chr1 102128717 102129128 + 1 NA Intergenic L2a|LINE|L2 -131688 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 182.667 chr1 36058906 36059233 + 1 NA 3' UTR (NM_024852, exon 19 of 19) 3' UTR (NM_024852, exon 19 of 19) -25025 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 227.5-31 chr7 28659214 28659639 + 1 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -26707 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 256.667-14 chr18 13529380 13529779 + 1 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) 69632 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 212.333-33 chr6 97259816 97260258 + 1 NA intron (NM_001350600, intron 8 of 23) L1MC4|LINE|L1 23179 NM_198468 253714 Hs.444292 NM_198468 ENSG00000146263 MMS22L C6orf167|dJ39B17.2 MMS22 like, DNA repair protein protein-coding 167.833-37 chr3 115275107 115275274 + 1 NA Intergenic Intergenic -127902 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 237.5-17 chr3 113208093 113208555 + 1 NA Intergenic Intergenic -3233 NM_001301867 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 197.833-12 chr18 13392815 13393216 + 1 NA intron (NM_181482, intron 3 of 5) intron (NM_181482, intron 3 of 5) 34519 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 248.667-16 chr2 139955843 139956286 + 1 NA Intergenic Intergenic 630621 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 140.833-12 chr11 28987896 28988120 + 1 NA Intergenic MLT1H1|LTR|ERVL-MaLR -510460 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 232.5-39 chr9 105393722 105394192 + 1 NA 3' UTR (NM_001286730, exon 16 of 16) 3' UTR (NM_001286730, exon 16 of 16) -54077 NM_001287191 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 186.667-74 chr7 24898593 24898828 + 1 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) -6089 NR_104112 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 165.5-18 chr14 31392571 31392820 + 1 NA intron (NM_015473, intron 6 of 35) L2|LINE|L2 27855 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 141.667-3 chr1 104183987 104184254 + 1 NA Intergenic Intergenic 111097 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 118.333-69 chr3 29664411 29664664 + 1 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 269619 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 167.833-48 chr5 151603087 151603441 + 1 NA Intergenic L1ME3|LINE|L1 -34320 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 168.333-31 chr2 207426963 207427341 + 1 NA Intergenic L1MB8|LINE|L1 -102810 NR_163947 260.833-16 chr7 83515032 83515407 + 1 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 126212 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 202.333-11 chr14 61862806 61863176 + 1 NA intron (NM_001367656, intron 1 of 7) L1MC1|LINE|L1 50288 NM_001367656 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 241.5-8 chr11 128695643 128696078 + 1 NA intron (NM_002017, intron 1 of 8) intron (NM_002017, intron 1 of 8) 163 NR_038908 100507392 Hs.657715 NR_038908 ENSG00000254703 SENCR FLI1-AS1|lncRNA9 smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA ncRNA 267.333-16 chr22 38538245 38538752 + 1 NA intron (NM_001363017, intron 8 of 11) intron (NM_001363017, intron 8 of 11) 29911 NM_001278208 11144 Hs.339396 NM_007068 ENSG00000100206 DMC1 DMC1H|LIM15|dJ199H16.1 DNA meiotic recombinase 1 protein-coding 148.333-39 chr17 30080587 30080889 + 1 NA intron (NM_198529, intron 16 of 22) intron (NM_198529, intron 16 of 22) -36069 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 213.333-34 chr4 109090180 109090581 + 1 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 212278 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 160.333-51 chr5 118706179 118706430 + 1 NA Intergenic Intergenic 110116 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 159.167-31 chr20 4822111 4822585 + 1 NA 5' UTR (NM_014737, exon 2 of 12) 5' UTR (NM_014737, exon 2 of 12) 1260 NM_014737 9770 Hs.631504 NM_014737 ENSG00000101265 RASSF2 CENP-34|RASFADIN Ras association domain family member 2 protein-coding 254.5-20 chr8 130925132 130925554 + 1 NA intron (NM_001115, intron 5 of 17) intron (NM_001115, intron 5 of 17) 115566 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 127.333-69 chr21 46568802 46569034 + 1 NA 3' UTR (NM_001353942, exon 38 of 38) 3' UTR (NM_001353942, exon 38 of 38) 36164 NM_006272 6285 Hs.422181 NM_006272 ENSG00000160307 S100B NEF|S100|S100-B|S100beta S100 calcium binding protein B protein-coding 150.5-78 chr8 88467416 88467617 + 1 NA Intergenic L1ME3A|LINE|L1 -140033 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 277.333-11 chr4 42668057 42668442 + 1 NA Intergenic Intergenic -11144 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 256.5-6 chr12 66036566 66036961 + 1 NA Intergenic MER5A1|DNA|hAT-Charlie -5697 NR_146530 105369810 NR_146530 ENSG00000256259 LINC02425 - long intergenic non-protein coding RNA 2425 ncRNA 220.667-15 chr2 15534781 15535135 + 1 NA intron (NR_052013, intron 8 of 50) L1ME2z|LINE|L1 26376 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 120.5-59 chr22 42799825 42800061 + 1 NA intron (NM_001142293, intron 13 of 14) intron (NM_001142293, intron 13 of 14) 57330 NM_014570 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 300.667-8 chr21 27385136 27385603 + 1 NA Intergenic AluSx|SINE|Alu -337010 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 197.5-45 chr5 84461420 84461710 + 1 NA Intergenic L2c|LINE|L2 -76685 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 131.333-85 chr4 154686461 154686633 + 1 NA Intergenic L1MA4|LINE|L1 -54294 NM_001301645 9227 Hs.658427 NM_004744 ENSG00000121207 LRAT LCA14 lecithin retinol acyltransferase protein-coding 167.333-26 chr16 75609227 75609580 + 1 NA intron (NM_001324446, intron 7 of 10) intron (NM_001324446, intron 7 of 10) 13878 NM_001324445 23536 Hs.729312 NM_012091 ENSG00000065457 ADAT1 HADAT1 adenosine deaminase tRNA specific 1 protein-coding 215.333-28 chr2 207224484 207224789 + 1 NA intron (NR_110283, intron 3 of 3) intron (NR_110283, intron 3 of 3) -15175 NR_146555 105373853 Hs.678559 NR_146555 ENSG00000229647 MYOSLID - myocardin-induced smooth muscle lncRNA, inducer of differentiation ncRNA 255.5-10 chr19 35733601 35733929 + 1 NA exon (NM_014727, exon 30 of 37) exon (NM_014727, exon 30 of 37) 8687 NR_144341 79713 Hs.352548 NM_024660 ENSG00000126246 IGFLR1 TMEM149 IGF like family receptor 1 protein-coding 136.333-65 chr4 35356206 35356383 + 1 NA Intergenic Intergenic 887645 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 244.667-15 chr2 173203421 173203960 + 1 NA intron (NR_033882, intron 7 of 7) intron (NR_033882, intron 7 of 7) 78346 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 200.333-32 chr6 48170464 48170698 + 1 NA Intergenic Ricksha|DNA|MULE-MuDR -101892 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 133.5-13 chr10 73558272 73558476 + 1 NA intron (NR_146997, intron 4 of 21) intron (NR_146997, intron 4 of 21) -5034 NR_135250 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 129.5-91 chr8 140845871 140846081 + 1 NA intron (NM_001352746, intron 4 of 30) intron (NM_001352746, intron 4 of 30) -113323 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 177.667-19 chr13 29111095 29111418 + 1 NA intron (NM_001033602, intron 3 of 13) LTR84a|LTR|ERVL 86799 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 154.333-38 chr2 65864978 65865165 + 1 NA Intergenic Intergenic -432472 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 294.333-10 chr3 66743680 66744069 + 1 NA Intergenic Intergenic -5538 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 165.667-38 chr2 143601222 143601469 + 1 NA intron (NM_018460, intron 11 of 13) intron (NM_018460, intron 11 of 13) -335722 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 256.333-13 chr2 18858054 18858456 + 1 NA Intergenic L1PA16|LINE|L1 168716 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 172.167-12 chr13 33065654 33066066 + 1 NA 3' UTR (NM_004795, exon 5 of 5) 3' UTR (NM_004795, exon 5 of 5) 49437 NM_004795 9365 Hs.524953 NM_004795 ENSG00000133116 KL HFTC3 klotho protein-coding 315.667-2 chr11 12698821 12699289 + 1 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 24634 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 256.5-18 chr2 176678463 176678955 + 1 NA Intergenic Intergenic 40955 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 171.5-53 chr6 4417843 4418184 + 1 NA Intergenic L1MEg|LINE|L1 -70785 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 165.333-39 chr3 100039219 100039443 + 1 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) -74933 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 254.667-22 chr4 111694892 111695237 + 1 NA Intergenic Intergenic -450390 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 209.667-19 chr16 86113117 86113519 + 1 NA Intergenic Intergenic -82863 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 231.333-4 chr1 155592901 155593303 + 1 NA Intergenic AluSx|SINE|Alu -17068 NM_001350783 55154 Hs.656547 NM_018116 ENSG00000125459 MSTO1 LST005|MMYAT|MST misato mitochondrial distribution and morphology regulator 1 protein-coding 195.5-40 chr8 52058318 52058593 + 1 NA Intergenic Intergenic -135907 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 277.333-14 chr6 44452790 44453373 + 1 NA Intergenic Tigger3c|DNA|TcMar-Tigger 17440 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 258.833-18 chr8 66653443 66653780 + 1 NA intron (NM_025054, intron 1 of 2) intron (NM_025054, intron 1 of 2) 13620 NM_025054 80124 Hs.632066 NM_025054 ENSG00000175073 VCPIP1 DUBA3|VCIP135 valosin containing protein interacting protein 1 protein-coding 185.5-24 chr2 139146252 139146542 + 1 NA Intergenic Intergenic 249073 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 241.333-28 chr7 100194886 100195183 + 1 NA intron (NM_012447, intron 8 of 33) Tigger1|DNA|TcMar-Tigger 17116 NM_012447 10734 Hs.592283 NM_012447 ENSG00000066923 STAG3 - stromal antigen 3 protein-coding 221.833-28 chr9 86857900 86858507 + 1 NA Intergenic Intergenic 89303 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 150.667-46 chr2 21868868 21869389 + 1 NA Intergenic L1MA4A|LINE|L1 -158476 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 166.333-71 chr7 14533490 14533880 + 1 NA intron (NM_001350717, intron 19 of 24) L1MA10|LINE|L1 307765 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 197.667-13 chr12 71151514 71151852 + 1 NA intron (NM_001369760, intron 1 of 7) MER115|DNA|hAT-Tip100 6126 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 302.333-13 chrX 94447111 94447545 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL 615898 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 138.333-66 chr2 211595040 211595221 + 1 NA intron (NM_001042599, intron 19 of 26) intron (NM_001042599, intron 19 of 26) 831230 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 213.667-33 chr5 158633305 158633571 + 1 NA Intergenic Intergenic -223665 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 197.333-55 chr7 39084392 39084638 + 1 NA intron (NM_007252, intron 2 of 10) intron (NM_007252, intron 2 of 10) -70948 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 184.5-47 chr6 165131744 165132002 + 1 NA Intergenic Intergenic 177732 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 174.667-28 chr16 78504101 78504454 + 1 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 404623 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 240.667-22 chr2 214155958 214156290 + 1 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -254930 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 139.667-15 chr10 111233446 111233743 + 1 NA Intergenic Intergenic 119303 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 224.333-23 chr3 187096778 187097104 + 1 NA Intergenic L1PB2|LINE|L1 42555 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 116.167-20 chr11 101187585 101187877 + 1 NA Intergenic Intergenic -57918 NM_000926 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 125.333-117 chr8 26100770 26100916 + 1 NA Intergenic L1MD|LINE|L1 -55430 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 182.667-21 chr14 83465631 83465841 + 1 NA Intergenic Intergenic 823104 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 133.5-24 chr15 68593691 68593926 + 1 NA intron (NM_006091, intron 1 of 11) intron (NM_006091, intron 1 of 11) 14815 NM_006091 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 144.833-3 chr1 62416269 62416622 + 1 NA Intergenic L1ME3F|LINE|L1 -19859 NM_001017415 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 168.333-16 chr14 41307946 41308193 + 1 NA Intergenic Intergenic -298787 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 203.333-46 chr7 113397769 113398056 + 1 NA Intergenic L1MA9|LINE|L1 -279330 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 170.333-9 chr1 247135719 247135990 + 1 NA intron (NM_001243740, intron 3 of 3) L1PA8A|LINE|L1 -23437 NM_207401 388759 Hs.456511 NM_207401 C1orf229 - chromosome 1 open reading frame 229 protein-coding 139.667-59 chr2 210915016 210915394 + 1 NA Intergenic L1PA16|LINE|L1 297634 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 134.833-28 chr2 71419722 71419954 + 1 NA intron (NM_001252613, intron 21 of 27) intron (NM_001252613, intron 21 of 27) -33723 NM_001130979 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 273.5-12 chr18 57219298 57219779 + 1 NA Intergenic AluY|SINE|Alu -48344 NR_149129 105372138 Hs.574448 NR_149129 ENSG00000267726 LINC02565 - long intergenic non-protein coding RNA 2565 ncRNA 171.333-33 chr2 58902274 58902559 + 1 NA intron (NR_033873, intron 3 of 13) MIRb|SINE|MIR -315292 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 235.667-17 chr3 141198086 141198465 + 1 NA Intergenic L1PA13|LINE|L1 -33550 NM_001037172 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 147.333-34 chr17 59132670 59132895 + 1 NA intron (NM_182620, intron 1 of 3) intron (NM_182620, intron 1 of 3) 5090 NR_030411 768216 NR_030411 ENSG00000211514 MIR454 MIRN454|hsa-mir-454|mir-454 microRNA 454 ncRNA 171.667-43 chr2 237002197 237002508 + 1 NA Intergenic Intergenic 53815 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 171.667-79 chr7 49674911 49675278 + 1 NA Intergenic Intergenic -98544 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 289.333-8 chr3 189391236 189391559 + 1 NA Intergenic AluSx|SINE|Alu -150803 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 177.5-9 chr1 189287966 189288288 + 1 NA Intergenic L1MC3|LINE|L1 1187883 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 157.5-22 chr15 99525862 99526127 + 1 NA Intergenic Intergenic -39423 NM_001352617 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 234.833-4 chr12 5696419 5696823 + 1 NA intron (NM_001278596, intron 15 of 25) L1M5|LINE|L1 202489 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 427.333-2 chr7 34440418 34440961 + 1 NA intron (NR_033665, intron 2 of 3) L1MC4|LINE|L1 -217529 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 119.5-103 chr8 121019065 121019215 + 1 NA Intergenic Intergenic -207094 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 240.833-26 chr8 60936345 60936879 + 1 NA Intergenic LTR79|LTR|ERVL 31136 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 273.5-3 chr11 47145773 47146226 + 1 NA intron (NM_001003677, intron 4 of 8) AluJb|SINE|Alu 30880 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 261.667-34 chr8 66587851 66588313 + 1 NA intron (NM_001144755, intron 8 of 14) intron (NM_001144755, intron 8 of 14) 25136 NM_001080416 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 208.167-4 chr12 127351204 127351474 + 1 NA Intergenic Intergenic -11267 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 174.333-75 chr9 9148868 9149056 + 1 NA intron (NM_002839, intron 10 of 45) intron (NM_002839, intron 10 of 45) 290944 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 263.667-16 chr6 117382949 117383493 + 1 NA intron (NM_002944, intron 16 of 42) intron (NM_002944, intron 16 of 42) 42634 NM_002944 6098 Hs.1041 NM_002944 ENSG00000047936 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding 172.333-4 chr1 174945593 174945846 + 1 NA intron (NR_121196, intron 3 of 5) intron (NR_121196, intron 3 of 5) 8542 NR_121196 101928696 Hs.666680 NR_121196 ENSG00000229531 LOC101928696 - uncharacterized LOC101928696 ncRNA 240.167-14 chr3 88115082 88115730 + 1 NA intron (NM_001350135, intron 3 of 6) MIR|SINE|MIR 34460 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 207.667-6 chr12 17359947 17360262 + 1 NA Intergenic Intergenic 228974 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 145.667-22 chr12 97081774 97081924 + 1 NA Intergenic Intergenic 174383 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 170.833-3 chr1 182033279 182033614 + 1 NA Intergenic Intergenic 28266 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 121.667-83 chr6 54776440 54776611 + 1 NA Intergenic MER4D|LTR|ERV1 -70246 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 283.5-7 chr20 34220207 34220551 + 1 NA Intergenic AluJb|SINE|Alu -39986 NM_001672 434 Hs.659995 NM_001672 ENSG00000101440 ASIP AGSW|AGTI|AGTIL|ASP|SHEP9 agouti signaling protein protein-coding 202.833-26 chr7 26158883 26159096 + 1 NA intron (NM_004289, intron 1 of 3) intron (NM_004289, intron 1 of 3) 6791 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 309.833-7 chr8 120185954 120186306 + 1 NA intron (NM_021110, intron 5 of 47) MIRc|SINE|MIR 61028 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 222.5-28 chr7 90705028 90705447 + 1 NA intron (NM_001287135, intron 2 of 14) intron (NM_001287135, intron 2 of 14) -4161 NM_012395 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 150.667-16 chr11 40342945 40343120 + 1 NA intron (NM_020929, intron 2 of 4) L2a|LINE|L2 -49902 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 132.667-72 chr4 63183823 63184059 + 1 NA Intergenic LOR1-int|LTR|ERV1 -1022176 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 117.5-8 chr11 33383567 33383708 + 1 NA intron (NM_012194, intron 1 of 20) L2b|LINE|L2 7529 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 179.5-2 chr1 165991052 165991379 + 1 NA Intergenic Intergenic 83294 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 176.333-16 chr12 30394298 30394665 + 1 NA Intergenic LOR1-int|LTR|ERV1 282763 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 143.5-71 chr6 74117345 74117587 + 1 NA intron (NR_110856, intron 1 of 3) LTR67B|LTR|ERVL 48015 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 261.667-30 chr6 46768593 46769079 + 1 NA Intergenic L1ME1|LINE|L1 21919 NM_001162435 100287718 Hs.736491 NM_001162435 ENSG00000230062 ANKRD66 - ankyrin repeat domain 66 protein-coding 223.333-13 chr15 32971055 32971374 + 1 NA intron (NM_001277313, intron 7 of 20) MIRb|SINE|MIR 96960 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 160.5-51 chr6 127455735 127455943 + 1 NA intron (NM_001012279, intron 7 of 11) intron (NM_001012279, intron 7 of 11) 3550 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 265.667-9 chr16 76313282 76313689 + 1 NA intron (NM_138994, intron 1 of 22) intron (NM_138994, intron 1 of 22) 3633 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 231.333-22 chr22 35581928 35582169 + 1 NA Intergenic AluSp|SINE|Alu 35281 NM_005368 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 202.333-43 chr7 9854923 9855242 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 220812 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 161.167-2 chr1 113707444 113707751 + 1 NA intron (NM_001323043, intron 11 of 18) intron (NM_001323043, intron 11 of 18) 51558 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 141.333-69 chr4 95369563 95369830 + 1 NA intron (NM_003728, intron 1 of 15) Charlie5|DNA|hAT-Charlie 179277 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 197.333-62 chr9 89871374 89871712 + 1 NA Intergenic L1ME2|LINE|L1 -97873 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 271.667-19 chr8 53052817 53053327 + 1 NA Intergenic L1MDa|LINE|L1 113164 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 185.333-11 chr12 15499671 15499910 + 1 NA intron (NM_030667, intron 4 of 26) intron (NM_030667, intron 4 of 26) -46821 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 361.333-6 chr5 134259693 134260268 + 1 NA Intergenic AluSq|SINE|Alu -33907 NM_002715 5515 Hs.105818 NM_002715 ENSG00000113575 PPP2CA NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C protein phosphatase 2 catalytic subunit alpha protein-coding 257.5-17 chr8 69438653 69438972 + 1 NA intron (NR_110433, intron 2 of 3) HAL1|LINE|L1 9432 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 167.667-63 chr4 19544746 19544936 + 1 NA Intergenic Intergenic -707064 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 311.5-3 chr14 53759231 53759817 + 1 NA Intergenic LTR106_Mam|LTR|LTR 188960 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 216.667-39 chr6 10132376 10132725 + 1 NA Intergenic L1M4b|LINE|L1 -271952 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 186.5-42 chr2 198656404 198656840 + 1 NA Intergenic Intergenic -281525 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 115.333-31 chr14 62154988 62155211 + 1 NA Intergenic L1PA16|LINE|L1 -15126 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 133.667-78 chr6 28153346 28153522 + 1 NA exon (NM_001278119, exon 7 of 7) exon (NM_001278119, exon 7 of 7) -8327 NR_103448 651302 Hs.172143 NM_001145129 ENSG00000226314 ZNF192P1 ZNF389|ZNF389P|dJ265C24.4 zinc finger protein 192 pseudogene 1 pseudo 297.167-8 chr9 28210915 28211559 + 1 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 508068 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 226.333-9 chr14 60951939 60952259 + 1 NA intron (NM_001177963, intron 6 of 6) intron (NM_001177963, intron 6 of 6) 28980 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 271.667-7 chr18 3232704 3233175 + 1 NA Intergenic Intergenic -12831 NM_003803 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 310.334-5 chr3 6687599 6688370 + 1 NA intron (NR_110123, intron 2 of 3) intron (NR_110123, intron 2 of 3) 117465 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 128.667-47 chr15 101517460 101517771 + 1 NA Intergenic L1MA7|LINE|L1 -27631 NM_138324 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 228.167-7 chr14 64300409 64300790 + 1 NA intron (NM_001291712, intron 4 of 13) AluJb|SINE|Alu -6189 NM_001437 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 217.333-37 chr7 53186526 53186880 + 1 NA Intergenic L1MDa|LINE|L1 151070 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 228.333-6 chr12 65905268 65905698 + 1 NA intron (NM_001300918, intron 3 of 4) intron (NM_001300918, intron 3 of 4) -23158 NR_158985 100129940 Hs.685856 NR_120478 ENSG00000197301 HMGA2-AS1 - HMGA2 antisense RNA 1 ncRNA 154.333-40 chr2 101742995 101743191 + 1 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 45386 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 219.833-17 chr4 89848530 89848980 + 1 NA Intergenic Intergenic -10451 NM_001146055 6622 Hs.21374 NM_000345 ENSG00000145335 SNCA NACP|PARK1|PARK4|PD1 synuclein alpha protein-coding 147.333-46 chr2 230038912 230039203 + 1 NA intron (NM_152527, intron 4 of 4) intron (NM_152527, intron 4 of 4) 29867 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 145.5-80 chr8 87236087 87236310 + 1 NA intron (NM_173538, intron 5 of 10) intron (NM_173538, intron 5 of 10) 369783 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 227.833-8 chr2 69204665 69205034 + 1 NA intron (NM_032208, intron 17 of 17) intron (NM_032208, intron 17 of 17) 101167 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 159.5-34 chr3 4723681 4723900 + 1 NA intron (NM_001168272, intron 39 of 60) intron (NM_001168272, intron 39 of 60) 27800 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 148.333-57 chr20 55058395 55058634 + 1 NA Intergenic MIR3|SINE|MIR -364529 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 118.667-87 chr4 71762929 71763167 + 1 NA intron (NM_000583, intron 6 of 12) intron (NM_000583, intron 6 of 12) 21031 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 169.667-32 chr18 65721218 65721432 + 1 NA Intergenic L1MB4|LINE|L1 -28927 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 130.833-71 chr8 103883363 103883632 + 1 NA intron (NR_145711, intron 1 of 21) intron (NR_145711, intron 1 of 21) 64277 NM_001348502 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 156.167-17 chr12 65082239 65082407 + 1 NA intron (NM_007191, intron 2 of 9) intron (NM_007191, intron 2 of 9) 38982 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 232.667-2 chr1 5327833 5328257 + 1 NA Intergenic Intergenic 534696 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 187.5-47 chr7 77685294 77685534 + 1 NA intron (NR_134251, intron 1 of 3) intron (NR_134251, intron 1 of 3) 10851 NR_134251 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 202.5-6 chr14 61815662 61815926 + 1 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) 3091 NM_001367656 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 258.333-33 chr9 83418321 83418806 + 1 NA intron (NM_174938, intron 1 of 13) L1PB2|LINE|L1 49179 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 260.333-11 chr2 79768445 79768733 + 1 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 97994 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 183.5 chr1 45430528 45430824 + 1 NA intron (NM_001320800, intron 1 of 9) intron (NM_001320800, intron 1 of 9) 60487 NM_001320800 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 138.833-85 chrX 63834860 63835029 + 1 NA Intergenic L1MC5|LINE|L1 -48857 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 173.667-47 chr4 100450782 100451053 + 1 NA intron (NM_016242, intron 4 of 11) MER113|DNA|hAT-Charlie -55670 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 128.667-29 chr11 108485483 108485740 + 1 NA intron (NM_001363503, intron 3 of 6) LTR85b|LTR|Gypsy? 12773 NM_153705 143888 Hs.83286 NM_153705 ENSG00000178202 POGLUT3 KDELC2 protein O-glucosyltransferase 3 protein-coding 198.167-17 chr2 64681586 64682028 + 1 NA Intergenic L2a|LINE|L2 -27894 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 199.667-23 chr19 29562404 29562634 + 1 NA intron (NM_001146339, intron 4 of 4) intron (NM_001146339, intron 4 of 4) 35935 NM_001146339 342865 Hs.451618 NM_001146339 ENSG00000187135 VSTM2B - V-set and transmembrane domain containing 2B protein-coding 191.167-25 chr5 128442762 128442964 + 1 NA intron (NM_001999, intron 7 of 64) intron (NM_001999, intron 7 of 64) 95382 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 242.167-19 chr5 62573690 62574127 + 1 NA intron (NM_016338, intron 27 of 29) L3|LINE|CR1 -4827 NR_073584 101180901 Hs.482269 NR_073584 ENSG00000086200 IPO11-LRRC70 - IPO11-LRRC70 readthrough ncRNA 150.667-5 chr1 114234029 114234260 + 1 NA Intergenic Charlie1a|DNA|hAT-Charlie -80275 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 210.667-48 chr5 117466772 117467124 + 1 NA intron (NR_046089, intron 2 of 5) L1MA4|LINE|L1 51436 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 153.667-7 chr1 238231347 238231526 + 1 NA Intergenic Intergenic 254581 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 251.333-15 chr21 27650894 27651614 + 1 NA Intergenic Intergenic -71125 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 364.5-9 chr8 82556139 82556802 + 1 NA Intergenic Intergenic -355634 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 162.167-46 chr6 62985638 62985970 + 1 NA Intergenic L1PA7|LINE|L1 334173 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 261.5-12 chr2 84067908 84068217 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -222620 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 233.167-26 chr4 98211525 98211990 + 1 NA Intergenic AluJb|SINE|Alu -49627 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 268.5-2 chr16 57913524 57913962 + 1 NA intron (NM_001297, intron 23 of 32) AluJo|SINE|Alu 57385 NM_001297 1258 Hs.147062 NM_001297 ENSG00000070729 CNGB1 CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45 cyclic nucleotide gated channel beta 1 protein-coding 345.667-6 chr5 103872669 103873184 + 1 NA Intergenic Intergenic -310137 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 214.333-22 chr18 2152930 2153316 + 1 NA Intergenic Intergenic 418382 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 307.833-2 chr19 48458097 48458451 + 1 NA intron (NM_013348, intron 1 of 2) L1MB7|LINE|L1 2567 NM_013348 3770 Hs.144011 NM_013348 ENSG00000182324 KCNJ14 IRK4|KIR2.4 potassium voltage-gated channel subfamily J member 14 protein-coding 225.5-49 chr8 123970258 123970595 + 1 NA intron (NM_001039112, intron 6 of 40) intron (NM_001039112, intron 6 of 40) 70356 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 266.667-11 chr2 185564221 185564870 + 1 NA Intergenic L1MA6|LINE|L1 174174 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 147.833-5 chr10 17369078 17369279 + 1 NA intron (NM_001004470, intron 3 of 7) L1MB8|LINE|L1 -17758 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 167.667-32 chr16 58844175 58844536 + 1 NA Intergenic L2b|LINE|L2 -110039 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 184.333-33 chr20 43868700 43868982 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR -25877 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 266.667-5 chr12 29548792 29549058 + 1 NA intron (NM_001367875, intron 12 of 19) (TA)n|Simple_repeat|Simple_repeat -49232 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 239.5-19 chr5 27352106 27352492 + 1 NA Intergenic L2b|LINE|L2 -119993 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 233.5-26 chr8 83308008 83308308 + 1 NA Intergenic L3|LINE|CR1 -95600 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 250.167-9 chr19 30319545 30320354 + 1 NA Intergenic Intergenic -52435 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 139.833-74 chr8 118287512 118287697 + 1 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -175785 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 205.5-23 chr2 188116097 188116389 + 1 NA intron (NR_126396, intron 2 of 2) intron (NR_126396, intron 2 of 2) 171448 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 225.5-38 chr4 33291039 33291382 + 1 NA Intergenic Intergenic 748683 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 210.333-12 chr14 65881123 65881505 + 1 NA Intergenic L1MA4|LINE|L1 410212 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 212.667-13 chr11 101782235 101782561 + 1 NA Intergenic L1PB|LINE|L1 -132612 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 217.5-17 chr17 52832990 52833354 + 1 NA Intergenic L1M1|LINE|L1 -28949 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 116.167-22 chr13 87840795 87840969 + 1 NA Intergenic (ATATAA)n|Simple_repeat|Simple_repeat -30362 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 256.833-9 chr2 65485813 65486256 + 1 NA Intergenic AluJr|SINE|Alu -53435 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 187.333-69 chr6 38910764 38911122 + 1 NA intron (NM_001371, intron 64 of 91) intron (NM_001371, intron 64 of 91) 42164 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 193.333-11 chr11 38700325 38700904 + 1 NA Intergenic Intergenic 51756 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 221.667-13 chr2 22232756 22233264 + 1 NA Intergenic HAL1ME|LINE|L1 -303469 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 220.167-20 chr3 6529185 6529429 + 1 NA Intergenic Intergenic 276142 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 181.667-24 chr2 63843054 63843338 + 1 NA intron (NM_006759, intron 1 of 9) intron (NM_006759, intron 1 of 9) 1316 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 205.667-4 chr10 56237839 56238192 + 1 NA Intergenic Intergenic 123244 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 219.5-20 chr19 14967712 14968049 + 1 NA intron (NR_073589, intron 3 of 8) MER49|LTR|ERV1 5038 NM_005071 6511 Hs.515217 NM_005071 ENSG00000105143 SLC1A6 EAAT4 solute carrier family 1 member 6 protein-coding 152.667-36 chr16 56680192 56680410 + 1 NA Intergenic Tigger3a|DNA|TcMar-Tigger -2169 NM_005952 4501 Hs.374950 NM_005952 ENSG00000187193 MT1X MT-1l|MT1 metallothionein 1X protein-coding 196.167-18 chr19 41723327 41723549 + 1 NA intron (NM_001308398, intron 8 of 8) L1MB4|LINE|L1 14812 NM_001308398 1048 Hs.709196 NM_004363 ENSG00000105388 CEACAM5 CD66e|CEA carcinoembryonic antigen related cell adhesion molecule 5 protein-coding 210.333-34 chr6 75596106 75596404 + 1 NA Intergenic AluSx|SINE|Alu -5254 NM_001304792 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO specific peptidase 6 protein-coding 163.333-86 chr9 75756378 75756744 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -134083 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 212.5-2 chr1 238696712 238696942 + 1 NA Intergenic LTR50|LTR|ERVL -210810 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 264.667-9 chr15 56397741 56398099 + 1 NA intron (NM_198524, intron 9 of 12) THE1B|LTR|ERVL-MaLR 32496 NM_001286449 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 208.5-45 chr7 33321017 33321308 + 1 NA intron (NM_198428, intron 9 of 22) L1MA3|LINE|L1 191598 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 141.667-87 chr5 16308700 16308876 + 1 NA Intergenic Intergenic 128547 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 210.833-11 chr16 64629227 64629711 + 1 NA Intergenic L2b|LINE|L2 492594 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 125.667-37 chr15 42076323 42076567 + 1 NA intron (NM_178034, intron 13 of 19) L1ME3Cz|LINE|L1 18117 NM_178034 283748 Hs.380225 NM_178034 ENSG00000159337 PLA2G4D cPLA2delta phospholipase A2 group IVD protein-coding 156.333-88 chr8 121854944 121855161 + 1 NA Intergenic L1PA16|LINE|L1 -213612 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 278.5-2 chr1 242445903 242446236 + 1 NA intron (NM_001320272, intron 2 of 10) MIRb|SINE|MIR 3399 NM_001195812 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 264.167-20 chr5 117464970 117465722 + 1 NA intron (NR_046089, intron 2 of 5) L1MA4|LINE|L1 49834 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 117.667-45 chr15 57110177 57110325 + 1 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -109179 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 254.167-6 chr18 4304308 4304687 + 1 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 39895 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 220.5-26 chr4 45090947 45091325 + 1 NA Intergenic Intergenic -364502 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 142.667-5 chr1 97330279 97330546 + 1 NA intron (NM_000110, intron 16 of 22) intron (NM_000110, intron 16 of 22) 234489 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 250.667-6 chr3 77749763 77750339 + 1 NA Intergenic AluSq2|SINE|Alu 298912 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 232.167-15 chr2 63149148 63149742 + 1 NA intron (NR_148704, intron 18 of 18) L1ME3E|LINE|L1 -29903 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 182.667-65 chrX 137520120 137520539 + 1 NA Intergenic L2b|LINE|L2 -45798 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 235.333-15 chr2 75898217 75898506 + 1 NA Intergenic L1MEg|LINE|L1 -187446 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 212.833-17 chr4 73325281 73325817 + 1 NA Intergenic MER21-int|LTR|ERVL -66751 NM_015574 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 207.333-13 chr12 40569356 40569613 + 1 NA intron (NM_173600, intron 172 of 173) intron (NM_173600, intron 172 of 173) -122955 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 216.333-47 chr8 99329422 99329656 + 1 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 207191 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 125.333-120 chr8 81860645 81860857 + 1 NA Intergenic (TATAGA)n|Simple_repeat|Simple_repeat -18465 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 122.833 chr1 42471595 42471987 + 1 NA intron (NM_001355227, intron 1 of 18) intron (NM_001355227, intron 1 of 18) 8505 NM_001355224 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 158.667-7 chr1 227854085 227854437 + 1 NA Intergenic L1MEd|LINE|L1 38544 NM_183062 339501 Hs.97604 NM_183062 ENSG00000185888 PRSS38 MPN2 serine protease 38 protein-coding 293.833-6 chr8 127010619 127011083 + 1 NA Intergenic Intergenic -2303 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 215.167-14 chr2 103993388 103993678 + 1 NA Intergenic Intergenic 414799 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 153.333-23 chr16 6735375 6735540 + 1 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -38352 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 188.333-12 chr12 43112367 43112650 + 1 NA Intergenic Intergenic -42807 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 146.333-64 chr3 94660967 94661163 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -277198 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 337.333-2 chr10 21471802 21472392 + 1 NA Intergenic Charlie1a|DNA|hAT-Charlie 24544 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 255.333 chr1 191501229 191501989 + 1 NA Intergenic L1ME3A|LINE|L1 -273111 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 132.333-111 chr8 133229862 133230105 + 1 NA non-coding (NR_037944, exon 3 of 3) non-coding (NR_037944, exon 3 of 3) 38944 NM_001204869 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 143.667-70 chr3 83669145 83669321 + 1 NA Intergenic Intergenic 1200342 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 255.833-11 chr3 86523036 86523331 + 1 NA Intergenic Intergenic 41240 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 178.167-46 chr7 82251963 82252256 + 1 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 191668 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 273.333-16 chr4 43730857 43731355 + 1 NA Intergenic L1MA2|LINE|L1 -238563 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 128.167-64 chr5 36945615 36945756 + 1 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 68916 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 208.333-6 chr10 107620666 107621036 + 1 NA Intergenic Intergenic 448442 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 315.333-9 chr5 7167571 7168051 + 1 NA Intergenic Intergenic 101543 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 168.5-30 chr2 143636459 143636939 + 1 NA intron (NM_018460, intron 12 of 13) L3|LINE|CR1 -300368 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 139.333-33 chr13 93470945 93471129 + 1 NA intron (NM_005708, intron 1 of 8) L1MD2|LINE|L1 244230 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 372.667-5 chr4 48487373 48487974 + 1 NA intron (NM_152679, intron 2 of 2) L3|LINE|CR1 -2579 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 211.333-29 chr2 85123381 85123829 + 1 NA Intergenic L1MEg|LINE|L1 -9787 NM_031283 83439 Hs.516297 NM_031283 ENSG00000152284 TCF7L1 TCF-3|TCF3 transcription factor 7 like 1 protein-coding 113.5-54 chr2 223567169 223567384 + 1 NA Intergenic Intergenic 35085 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 118.167 chr1 110016981 110017244 + 1 NA intron (NM_001242673, intron 9 of 16) intron (NM_001242673, intron 9 of 16) 13164 NM_001242676 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 215.5-32 chr5 28029114 28029419 + 1 NA Intergenic L1M1|LINE|L1 258399 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 279.833-5 chr3 108962308 108962750 + 1 NA intron (NM_014429, intron 27 of 27) intron (NM_014429, intron 27 of 27) -8650 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 170.5-7 chr1 204525599 204525857 + 1 NA intron (NM_001204172, intron 2 of 2) AluJr|SINE|Alu 9322 NM_002393 4194 Hs.497492 NM_002393 ENSG00000198625 MDM4 HDMX|MDMX|MRP1 MDM4 regulator of p53 protein-coding 157.167-28 chr16 12660138 12660494 + 1 NA 3' UTR (NM_001099455, exon 3 of 3) 3' UTR (NM_001099455, exon 3 of 3) -60005 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 202.833-14 chr17 59069742 59070015 + 1 NA intron (NR_148346, intron 9 of 23) MLT1B|LTR|ERVL-MaLR 37002 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 157.333-22 chr14 72888715 72888910 + 1 NA intron (NM_001280543, intron 1 of 10) intron (NM_001280543, intron 1 of 10) 3837 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 193.667-16 chr14 67100038 67100288 + 1 NA intron (NM_001024218, intron 11 of 21) intron (NM_001024218, intron 11 of 21) -89277 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 255.833-18 chr8 49912820 49913535 + 1 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) 1770 NM_001321776 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 149.667-34 chr19 34738101 34738288 + 1 NA intron (NM_001029997, intron 1 of 3) MSTD|LTR|ERVL-MaLR 3951 NM_001029997 339318 Hs.720472 NM_001029997 ENSG00000197841 ZNF181 HHZ181 zinc finger protein 181 protein-coding 238.333-2 chr1 208975544 208975926 + 1 NA TTS (NR_146915) TTS (NR_146915) 3281 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 128.5-39 chr2 124084754 124085046 + 1 NA intron (NM_130773, intron 1 of 23) L1MD1|LINE|L1 59613 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 135.167-26 chr14 56057953 56058383 + 1 NA Intergenic Intergenic -60243 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 192.5-23 chr2 24353892 24354280 + 1 NA intron (NM_001348182, intron 1 of 38) intron (NM_001348182, intron 1 of 38) 6450 NM_147152 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 192.5 chr1 55489313 55489602 + 1 NA Intergenic L1ME4a|LINE|L1 263816 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 123.333-11 chr1 199468434 199468697 + 1 NA Intergenic Intergenic 319967 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 311.333-10 chr6 143040291 143040882 + 1 NA Intergenic L1MEg|LINE|L1 -3004 NR_038987 100507489 Hs.486645 NR_038987 LINC01277 - long intergenic non-protein coding RNA 1277 ncRNA 200.667-27 chr18 10552680 10553013 + 1 NA TTS (NM_003826) TTS (NM_003826) 26819 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 211.333-28 chr2 82300382 82300907 + 1 NA Intergenic Intergenic -556159 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 315.667 chr10 72279349 72279711 + 1 NA Intergenic AluSx1|SINE|Alu 5606 NM_019058 54541 Hs.744875 NM_019058 ENSG00000168209 DDIT4 Dig2|REDD-1|REDD1 DNA damage inducible transcript 4 protein-coding 243.167-2 chr1 60181785 60182198 + 1 NA Intergenic L1MEc|LINE|L1 -108221 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 149.833-19 chr2 137574814 137575098 + 1 NA intron (NM_001316349, intron 17 of 27) intron (NM_001316349, intron 17 of 27) 352976 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 342.667-2 chr10 65140785 65141267 + 1 NA Intergenic L1MA10|LINE|L1 -216508 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 137.333-110 chr9 36425109 36425348 + 1 NA Intergenic Intergenic -24030 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 256.333-7 chr12 790453 790786 + 1 NA intron (NM_001184985, intron 1 of 27) intron (NM_001184985, intron 1 of 27) 37696 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 201.667-30 chr5 57958466 57958708 + 1 NA Intergenic Intergenic -59425 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 259.333-22 chr7 41624087 41624482 + 1 NA Intergenic Intergenic -69635 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 164.5-66 chrX 66029664 66029898 + 1 NA intron (NM_001184831, intron 2 of 5) L2a|LINE|L2 10299 NM_001184831 11326 Hs.8904 NM_007268 ENSG00000155659 VSIG4 CRIg|Z39IG V-set and immunoglobulin domain containing 4 protein-coding 224.833-16 chr7 29407872 29408190 + 1 NA intron (NM_001293072, intron 6 of 12) AluSz|SINE|Alu -71681 NM_001293079 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 205.667-62 chrX 132070640 132070919 + 1 NA intron (NM_001042453, intron 6 of 10) intron (NM_001042453, intron 6 of 10) 47190 NM_001042452 51765 Hs.444247 NM_016542 ENSG00000134602 STK26 MASK|MST4 serine/threonine kinase 26 protein-coding 188.833-3 chr1 235407387 235407613 + 1 NA intron (NM_001287801, intron 3 of 17).2 MER65C|LTR|ERV1 40073 NM_003193 6905 Hs.744998 NM_003193 ENSG00000284770 TBCE HRD|KCS|KCS1|PEAMO|pac2 tubulin folding cofactor E protein-coding 125.667-125 chrX 72433698 72433870 + 1 NA intron (NR_051952, intron 8 of 9) intron (NR_051952, intron 8 of 9) -126627 NM_001144886 4435 Hs.40403 NM_004143 ENSG00000125931 CITED1 MSG1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 protein-coding 153.667-22 chr14 58975164 58975458 + 1 NA intron (NR_110547, intron 4 of 5) intron (NR_110547, intron 4 of 5) 147023 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 153.667-63 chr5 163200788 163201053 + 1 NA Intergenic Intergenic -236651 NM_001364023 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 184.333-12 chr14 65920986 65921362 + 1 NA Intergenic Intergenic 450072 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 214.167-24 chr4 65198554 65199221 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -194387 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 135.5-58 chr4 61221708 61221914 + 1 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 19639 NM_001371342 196.5-7 chr10 122299008 122299397 + 1 NA intron (NM_001318189, intron 9 of 15) intron (NM_001318189, intron 9 of 15) 27906 NM_001318189 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 131.333-16 chr11 36558573 36558862 + 1 NA Intergenic L1M2|LINE|L1 -9296 NM_000448 5896 Hs.73958 NM_000448 ENSG00000166349 RAG1 RAG-1|RNF74 recombination activating 1 protein-coding 255.667-5 chr12 40207175 40207443 + 1 NA Intergenic Intergenic -17688 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 147.167-44 chr4 31554569 31554970 + 1 NA intron (NR_149121, intron 1 of 2) intron (NR_149121, intron 1 of 2) 48225 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 169.5-38 chr20 52493844 52494116 + 1 NA Intergenic Intergenic -126858 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 208.667-21 chr16 22041419 22041636 + 1 NA intron (NM_001164579, intron 1 of 2) intron (NM_001164579, intron 1 of 2) 33416 NM_001164579 730094 Hs.498890 NM_173501 ENSG00000185716 MOSMO ATTHOG|BC030336|C16orf52 modulator of smoothened protein-coding 160.667-65 chr4 122992378 122992568 + 1 NA intron (NM_001317799, intron 10 of 10) intron (NM_001317799, intron 10 of 10) 69395 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 254.333-19 chr9 34350588 34350979 + 1 NA Intergenic L1ME2z|LINE|L1 21214 NM_147173 318 Hs.493767 NM_001161 ENSG00000164978 NUDT2 APAH1 nudix hydrolase 2 protein-coding 204.333-56 chr8 118449416 118449839 + 1 NA intron (NM_001101676, intron 2 of 4) AluYc|SINE|Alu -171374 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 199.833-14 chr17 70994272 70994574 + 1 NA Intergenic Intergenic 207756 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 216.667-52 chrX 91102309 91102525 + 1 NA Intergenic Intergenic -332422 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 265.333-12 chr2 137078897 137079429 + 1 NA intron (NM_001316349, intron 3 of 27) FLAM_A|SINE|Alu 313618 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 197.667-59 chr7 99899332 99899581 + 1 NA intron (NM_033091, intron 5 of 5) LTR32|LTR|ERVL 20074 NM_033091 89122 Hs.50749 NM_033017 ENSG00000146833 TRIM4 RNF87 tripartite motif containing 4 protein-coding 129.167-53 chr4 40566001 40566205 + 1 NA intron (NM_001371114, intron 1 of 5) intron (NM_001371114, intron 1 of 5) -50118 NM_019027 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 154.667-23 chr14 51286812 51287026 + 1 NA Intergenic L1MB1|LINE|L1 41466 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 178.5-36 chr17 56068335 56068706 + 1 NA Intergenic LTR33|LTR|ERVL -84955 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 215.333-54 chr9 17393746 17394026 + 1 NA intron (NM_001365029, intron 14 of 25) intron (NM_001365029, intron 14 of 25) -185180 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 163.333-15 chr11 43277363 43277610 + 1 NA Intergenic MIRb|SINE|MIR -8117 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 240.333-22 chr5 61477616 61477931 + 1 NA intron (NM_020928, intron 2 of 13) intron (NM_020928, intron 2 of 13) 145515 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 212.167-27 chr9 94998190 94998468 + 1 NA intron (NM_032823, intron 9 of 14) intron (NM_032823, intron 9 of 14) -52775 NR_147613 101928119 Hs.630906 NR_147613 LOC101928119 - uncharacterized LOC101928119 ncRNA 157.667-65 chr6 127366949 127367157 + 1 NA Intergenic L1MB7|LINE|L1 -23444 NM_001105545 55862 Hs.486410 NM_018479 ENSG00000093144 ECHDC1 HEL-S-76|MMCD|dJ351K20.2 ethylmalonyl-CoA decarboxylase 1 protein-coding 165.667-28 chr16 78467717 78467937 + 1 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 368173 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 231.5-3 chr10 126546720 126547119 + 1 NA intron (NM_001350922, intron 2 of 8) AluSz6|SINE|Alu -25426 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 123.833-19 chr14 67212059 67212191 + 1 NA intron (NM_173526, intron 6 of 8) intron (NM_173526, intron 6 of 8) 22685 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 145.667-76 chr4 103355313 103355545 + 1 NA Intergenic L1MEf|LINE|L1 -69613 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 165.667-12 chr10 66354497 66354717 + 1 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -571429 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 137.333-9 chr10 7722200 7722377 + 1 NA intron (NM_002216, intron 8 of 20) intron (NM_002216, intron 8 of 20) 18972 NM_002216 3698 Hs.75285 NM_002216 ENSG00000151655 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 447.5 chr22 22178856 22179539 + 1 NA Intergenic Intergenic -65589 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 400.166-2 chr8 80775467 80776231 + 1 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 98619 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 268.333-12 chr3 139091124 139091559 + 1 NA Intergenic LTR40a|LTR|ERVL -12844 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 195.667-11 chr13 75563588 75563824 + 1 NA intron (NM_006002, intron 3 of 8) L1MA8|LINE|L1 13956 NM_006002 7347 Hs.162241 NM_006002 ENSG00000118939 UCHL3 UCH-L3 ubiquitin C-terminal hydrolase L3 protein-coding 211.5-13 chr2 26153538 26153791 + 1 NA Intergenic L1MB1|LINE|L1 -19424 NM_001168241 150946 Hs.187912 NM_001168241 ENSG00000157833 GAREM2 FAM59B|GAREML GRB2 associated regulator of MAPK1 subtype 2 protein-coding 259.667-20 chr4 58438666 58438988 + 1 NA Intergenic Intergenic 97501 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 260.5-18 chr5 40768325 40768745 + 1 NA 3' UTR (NM_001355034, exon 6 of 6) 3' UTR (NM_001355034, exon 6 of 6) -12574 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 139.333-61 chr3 156723957 156724342 + 1 NA Intergenic Intergenic 47485 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 164.167-9 chr11 39009516 39009822 + 1 NA Intergenic Intergenic 360811 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 193.333-37 chr22 45706260 45706565 + 1 NA intron (NM_013236, intron 5 of 11) L1M4|LINE|L1 34578 NM_013236 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 272.833-4 chr15 59347830 59348331 + 1 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 24791 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 211.333-47 chr6 76718531 76719046 + 1 NA Intergenic Intergenic -125165 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 269.833-14 chr4 90101365 90101740 + 1 NA Intergenic AluJb|SINE|Alu -25981 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 237.833-17 chr7 7475048 7475570 + 1 NA intron (NM_001037763, intron 14 of 34) intron (NM_001037763, intron 14 of 34) 60564 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 158.667-65 chr4 121715889 121716300 + 1 NA Intergenic HAL1|LINE|L1 -19114 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 134.667-45 chr18 73229183 73229355 + 1 NA intron (NR_034133, intron 2 of 5) intron (NR_034133, intron 2 of 5) 35229 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 250.333-11 chr15 65893280 65893667 + 1 NA Intergenic Tigger4|DNA|TcMar-Tigger 23982 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 211.667-48 chrX 79587375 79587669 + 1 NA Intergenic L1PA15|LINE|L1 -219970 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 124.667-4 chr1 111367462 111367603 + 1 NA Intergenic Intergenic 20910 NM_181643 128344 Hs.172510 NM_181643 ENSG00000173947 PIFO C1orf88|pitchfork primary cilia formation protein-coding 490.667-2 chr8 117909236 117909811 + 1 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 11390 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 213.5-5 chr14 66327981 66328315 + 1 NA Intergenic Intergenic -158223 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 187.667-35 chr3 107838019 107838439 + 1 NA Intergenic Intergenic 39839 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 162.5-77 chr9 30384002 30384305 + 1 NA Intergenic Intergenic 24301 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 122.667-10 chr10 78946832 78947040 + 1 NA intron (NR_024429, intron 6 of 7) AluSz|SINE|Alu 120512 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 287.5-15 chr6 151607681 151608244 + 1 NA intron (NM_025059, intron 9 of 10) L1M2|LINE|L1 -82534 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 150.667-20 chr11 111225437 111225608 + 1 NA Intergenic L1MA5A|LINE|L1 -20203 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 209.667-38 chr8 24338568 24338890 + 1 NA intron (NM_014265, intron 14 of 22) intron (NM_014265, intron 14 of 22) 44660 NM_014265 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 147.333-44 chr2 127079373 127079542 + 1 NA intron (NM_001320633, intron 1 of 14) intron (NM_001320633, intron 1 of 14) 2608 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 310.333-3 chr2 40653776 40654328 + 1 NA Intergenic Intergenic -141617 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 263.5-9 chr17 78548544 78548949 + 1 NA intron (NM_173628, intron 16 of 80) intron (NM_173628, intron 16 of 80) 28648 NM_173628 8632 Hs.375975 NM_003727 ENSG00000187775 DNAH17 DNAHL1|DNEL2 dynein axonemal heavy chain 17 protein-coding 114.667-117 chr7 33115528 33115785 + 1 NA Intergenic Intergenic -6252 NM_203288 6100 Hs.326805 NM_203288 ENSG00000164610 RP9 PAP-1|PAP1 RP9 pre-mRNA splicing factor protein-coding 139.5-54 chr5 86932006 86932188 + 1 NA Intergenic Intergenic 182857 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 228.5-6 chr12 42436511 42436889 + 1 NA intron (NM_016488, intron 9 of 12) MER44B|DNA|TcMar-Tigger 46915 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 279.667-2 chr10 35225077 35225549 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR -21712 NM_181698 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 159.833-9 chr1 207083796 207084105 + 1 NA Intergenic Intergenic -4910 NM_001017365 725 Hs.99886 NM_000716 ENSG00000123843 C4BPB C4BP complement component 4 binding protein beta protein-coding 150.333-44 chr15 81373299 81373561 + 1 NA intron (NM_001080532, intron 1 of 21) intron (NM_001080532, intron 1 of 21) 783 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 233.167-29 chr6 46623644 46624127 + 1 NA intron (NM_016593, intron 7 of 11) intron (NM_016593, intron 7 of 11) 28933 NM_016593 51302 Hs.387367 NM_016593 ENSG00000146233 CYP39A1 - cytochrome P450 family 39 subfamily A member 1 protein-coding 153.167-14 chr12 10649194 10649863 + 1 NA intron (NM_018423, intron 1 of 10) intron (NM_018423, intron 1 of 10) 24524 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 172.833-46 chr5 102644811 102645102 + 1 NA intron (NR_103753, intron 1 of 2) L1MA2|LINE|L1 26508 NR_103755 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 166.833-12 chr12 110971347 110971827 + 1 NA Intergenic MLT1H1|LTR|ERVL-MaLR -13769 NR_135001 105369980 Hs.564357 NR_135001 ENSG00000258240 LOC105369980 - uncharacterized LOC105369980 ncRNA 152.5-17 chr15 80529826 80530004 + 1 NA intron (NM_014862, intron 8 of 18) intron (NM_014862, intron 8 of 18) 33029 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 174.833-15 chr17 63444399 63444925 + 1 NA intron (NM_001915, intron 1 of 5) intron (NM_001915, intron 1 of 5) 1522 NM_001017916 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 277.5-15 chr8 88993052 88993483 + 1 NA Intergenic Intergenic -665784 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 147.333-95 chr9 25710172 25710371 + 1 NA Intergenic Intergenic -31413 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 338.333-2 chr15 90205009 90205607 + 1 NA intron (NM_198925, intron 1 of 13) intron (NM_198925, intron 1 of 13) 3978 NM_001324034 10509 Hs.474935 NM_020210 ENSG00000185033 SEMA4B SEMAC|SemC semaphorin 4B protein-coding 191.333-33 chr5 179017516 179017823 + 1 NA Intergenic AluSz6|SINE|Alu -6135 NM_001353374 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 262.5-10 chr20 17442738 17443231 + 1 NA intron (NM_002594, intron 8 of 11) intron (NM_002594, intron 8 of 11) 88395 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 362.333-2 chr2 67552899 67553418 + 1 NA Intergenic Intergenic 155825 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 235.5-19 chr2 99062310 99062864 + 1 NA intron (NR_146001, intron 15 of 18) AluJr|SINE|Alu 78593 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 144.167-66 chr6 34878529 34878823 + 1 NA exon (NM_005643, exon 5 of 5) exon (NM_005643, exon 5 of 5) 9366 NM_005643 6882 Hs.112444 NM_005643 ENSG00000064995 TAF11 MGC:15243|PRO2134|TAF2I|TAFII28 TATA-box binding protein associated factor 11 protein-coding 122.667-42 chr2 78705026 78705176 + 1 NA Intergenic MIR3|SINE|MIR 159570 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 220.167-24 chr5 62207107 62207635 + 1 NA Intergenic AluJo|SINE|Alu -98791 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 217.333-45 chr9 81019522 81019960 + 1 NA Intergenic L2a|LINE|L2 669794 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 185.667-49 chr6 133607062 133607278 + 1 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -213977 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 135.333-45 chr2 186345079 186345344 + 1 NA Intergenic Intergenic -141049 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 161.5-44 chr7 2220967 2221253 + 1 NA intron (NM_001304524, intron 2 of 16) intron (NM_001304524, intron 2 of 16) 11835 NM_001013836 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 228.667-11 chr13 101862806 101863167 + 1 NA intron (NM_001321937, intron 3 of 3) intron (NM_001321937, intron 3 of 3) 53659 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 146.5-47 chr2 174185993 174186195 + 1 NA intron (NM_001011708, intron 3 of 9) L1MC5a|LINE|L1 62438 NM_001328688 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 139.667-29 chr15 73613539 73613823 + 1 NA intron (NM_012428, intron 1 of 8) intron (NM_012428, intron 1 of 8) 19708 NM_001161363 27020 Hs.744867 NM_012428 ENSG00000156642 NPTN GP55|GP65|SDFR1|SDR1|np55|np65 neuroplastin protein-coding 198.167-29 chr5 35288270 35288608 + 1 NA Intergenic Intergenic -57952 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 187.667-58 chr9 131936283 131936611 + 1 NA intron (NM_004269, intron 4 of 7) intron (NM_004269, intron 4 of 7) 143420 NM_004269 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 142.333-101 chr9 13001132 13001385 + 1 NA Intergenic AluSx1|SINE|Alu -28625 NR_132976 106635615 NR_132976 SNORD137 - small nucleolar RNA, C/D box 137 snoRNA 152.5-9 chr12 118870280 118870500 + 1 NA Intergenic L1ME3B|LINE|L1 -36854 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 153.833-8 chr10 29329454 29329636 + 1 NA Intergenic Intergenic 40475 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 125.333-11 chr1 221076223 221076369 + 1 NA Intergenic MamTip2|DNA|hAT-Tip100 -196156 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 300.333-2 chr1 177708276 177708808 + 1 NA intron (NR_110722, intron 2 of 3) intron (NR_110722, intron 2 of 3) 8018 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 168.833-25 chr2 83570329 83570582 + 1 NA Intergenic Intergenic 47641 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 171.167-2 chr1 92780551 92780815 + 1 NA intron (NM_001308248, intron 1 of 18) L1M5|LINE|L1 4425 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 201.833-26 chr8 125952415 125952925 + 1 NA Intergenic MER92-int|LTR|ERV1 -1473 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 201.667-32 chr5 91542747 91543057 + 1 NA Intergenic Intergenic -159585 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 174.333-57 chr7 14608978 14609334 + 1 NA intron (NM_001350717, intron 15 of 24) L1PA16|LINE|L1 232294 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 171.333-58 chr5 103800015 103800214 + 1 NA Intergenic AluY|SINE|Alu -237325 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 188.667-31 chr21 27756350 27756658 + 1 NA Intergenic Intergenic 34125 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 181.5-15 chr12 61429162 61429425 + 1 NA Intergenic Intergenic 763546 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 186.667-83 chrX 41701840 41702229 + 1 NA intron (NM_003688, intron 5 of 26) intron (NM_003688, intron 5 of 26) 13061 NM_005300 2857 Hs.495989 NM_005300 ENSG00000171659 GPR34 LYPSR1 G protein-coupled receptor 34 protein-coding 204.333-42 chr5 55456906 55457208 + 1 NA intron (NR_103485, intron 4 of 6) AluSg|SINE|Alu 51869 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 285.333-5 chr12 97470318 97470872 + 1 NA intron (NR_024037, intron 2 of 8) intron (NR_024037, intron 2 of 8) 5575 NR_024037 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 164.667-54 chr5 39481987 39482227 + 1 NA Intergenic Intergenic -38324 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 168.5-40 chr4 60963856 60964092 + 1 NA Intergenic AluYc|SINE|Alu 41355 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 209.333-25 chr22 21828881 21829160 + 1 NA intron (NM_002745, intron 1 of 8) intron (NM_002745, intron 1 of 8) 38660 NM_138957 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 206.667-8 chr10 16197858 16198265 + 1 NA Intergenic MER66D|LTR|ERV1 -238882 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 221.5-24 chr21 25765224 25765655 + 1 NA intron (NM_001197297, intron 9 of 9) HAL1|LINE|L1 -29785 NM_001003697 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 222.667-11 chr14 82247518 82247893 + 1 NA Intergenic Intergenic -394927 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 165.167-67 chrX 41910069 41910347 + 0.833333 NA intron (NM_003688, intron 1 of 26) AluSx|SINE|Alu 12826 NM_003688 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 211.833-27 chr8 90179416 90179722 + 0.833333 NA Intergenic MIR|SINE|MIR -41919 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 195.333-10 chr14 88909570 88909834 + 0.833333 NA Intergenic Intergenic 85051 NM_001366535 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 125.5-9 chr11 14290329 14290499 + 0.833333 NA intron (NM_001177314, intron 4 of 5) AluSx3|SINE|Alu 68071 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 160.5-30 chr20 51472378 51472630 + 0.833333 NA intron (NM_012340, intron 5 of 10) intron (NM_012340, intron 5 of 10) -19527 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 250-10 chr15 71917768 71918301 + 0.833333 NA intron (NM_006901, intron 18 of 41) L1ME3Cz|LINE|L1 107480 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 146.667-21 chr12 14848958 14849247 + 0.833333 NA Intergenic Intergenic -5576 NM_021071 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DO/ART4|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 181.5-58 chr7 113223557 113224022 + 0.833333 NA Intergenic MER5B|DNA|hAT-Charlie -105207 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 226.833-20 chr7 69520524 69520926 + 0.833333 NA Intergenic L1M4b|LINE|L1 76899 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 136.333-9 chr10 19880651 19880936 + 0.833333 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 64361 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 136.833-4 chr10 13861601 13861866 + 0.833333 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) 110163 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 173.667-20 chr15 26148058 26148461 + 0.833333 NA Intergenic Intergenic 32446 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 259.333-24 chr8 129131107 129131539 + 0.833333 NA Intergenic Intergenic 109917 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 223.333-14 chr15 57074785 57075288 + 0.833333 NA intron (NM_001322158, intron 5 of 20) intron (NM_001322158, intron 5 of 20) -144394 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 217.333-30 chr5 65111304 65111930 + 0.833333 NA Intergenic L1M4|LINE|L1 342687 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 158.667-34 chr18 13059376 13059678 + 0.833333 NA intron (NM_032142, intron 21 of 44) intron (NM_032142, intron 21 of 44) 68165 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 164.167-24 chr16 89222007 89222371 + 0.833333 NA intron (NR_037705, intron 3 of 5) intron (NR_037705, intron 3 of 5) 4486 NM_182531 197320 Hs.647385 NM_182531 ENSG00000170100 ZNF778 - zinc finger protein 778 protein-coding 189.333-7 chr12 42935760 42936064 + 0.833333 NA Intergenic Intergenic -219403 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 228.833-17 chr6 126991950 126992316 + 0.833333 NA Intergenic MER47A|DNA|TcMar-Tigger -126538 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 135.833-17 chr14 65645360 65645560 + 0.833333 NA intron (NM_004480, intron 5 of 9) Arthur1B|DNA|hAT-Tip100 174358 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 240.833-2 chr1 161932988 161933459 + 0.833333 NA intron (NM_007348, intron 15 of 15) Charlie22a|DNA|hAT-Charlie 91242 NM_001297713 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 118.5-51 chr2 66030295 66030459 + 0.833333 NA Intergenic L1PB1|LINE|L1 327951 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 492.167-2 chr7 31434908 31436115 + 0.833333 NA Intergenic L2|LINE|L2 -78560 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 133.833-39 chr2 115829276 115829436 + 0.833333 NA intron (NM_001321912, intron 22 of 25) L1M5|LINE|L1 485541 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 223.667-19 chr22 19644038 19644500 + 0.833333 NA Intergenic Intergenic -70234 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 115.667-98 chr5 78807345 78807644 + 0.833333 NA intron (NM_000046, intron 6 of 7) intron (NM_000046, intron 6 of 7) -158722 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 210.5-9 chr12 8515989 8516383 + 0.833333 NA intron (NM_080387, intron 2 of 5) L1MA10|LINE|L1 2683 NM_080387 338339 Hs.351811 NM_080387 ENSG00000166527 CLEC4D CD368|CLEC-6|CLEC6|CLECSF8|Dectin-3|MCL|MPCL C-type lectin domain family 4 member D protein-coding 177.167-12 chr17 58929796 58930097 + 0.833333 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 174077 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 164.333-87 chr9 26738956 26739454 + 0.833333 NA Intergenic L1PA15|LINE|L1 153597 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 118.333-84 chr4 63723944 63724159 + 0.833333 NA Intergenic Intergenic 685399 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 181.667-42 chr3 180864046 180864428 + 0.833333 NA intron (NR_109986, intron 1 of 13) L1MB8|LINE|L1 5941 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 125.5-33 chr17 70811096 70811431 + 0.833333 NA Intergenic Intergenic 390916 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 150.167-61 chr7 39469503 39469700 + 0.833333 NA TTS (NM_001166018) TTS (NM_001166018) -63255 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 160.833-17 chr12 40262276 40262598 + 0.833333 NA intron (NM_198578, intron 13 of 50) MIR|SINE|MIR 37440 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 155.333-94 chr8 118105409 118105890 + 0.833333 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 6170 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 150.333-50 chr2 7132216 7132505 + 0.833333 NA Intergenic MIR|SINE|MIR -54480 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 141-50 chr20 51416377 51416602 + 0.833333 NA intron (NM_012340, intron 9 of 10) intron (NM_012340, intron 9 of 10) 36488 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 137.5-35 chr15 57105577 57105856 + 0.833333 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -113714 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 159.167-9 chr10 82289252 82289736 + 0.833333 NA intron (NM_001370082, intron 3 of 10) Chap1_Mam|DNA|hAT-Charlie -56574 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 286.333-5 chr2 31376082 31376630 + 0.833333 NA intron (NM_000379, intron 14 of 35) (TAG)n|Simple_repeat|Simple_repeat 38386 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 136.333-5 chr1 219912996 219913230 + 0.833333 NA Intergenic Intergenic 15538 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 247.5-4 chr1 169747263 169747667 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -13386 NM_000450 6401 Hs.82848 NM_000450 ENSG00000007908 SELE CD62E|ELAM|ELAM1|ESEL|LECAM2 selectin E protein-coding 280.833-7 chr5 104705469 104706023 + 0.833333 NA Intergenic Intergenic -393728 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 224.333-4 chr11 114740311 114740596 + 0.833333 NA Intergenic L1MA9|LINE|L1 61926 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 233.5-22 chr6 123111322 123111791 + 0.833333 NA Intergenic Intergenic 115321 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 158.833-28 chr2 53534641 53534962 + 0.833333 NA Intergenic Tigger2|DNA|TcMar-Tigger -232982 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 132-15 chr11 8000549 8000800 + 0.833333 NA 3' UTR (NM_003754, exon 8 of 8) 3' UTR (NM_003754, exon 8 of 8) 13337 NM_003754 8665 Hs.516023 NM_003754 ENSG00000175390 EIF3F EIF3S5|MRT67|eIF3-p47 eukaryotic translation initiation factor 3 subunit F protein-coding 248.666-3 chr18 11795236 11795793 + 0.833333 NA intron (NM_001369387, intron 4 of 11) intron (NM_001369387, intron 4 of 11) 43429 NM_001369387 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 204.333-8 chr10 76694752 76695063 + 0.833333 NA Intergenic L1MC|LINE|L1 -193137 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 170-73 chr7 97554649 97555020 + 0.833333 NA Intergenic Intergenic -177252 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 163.667-31 chr19 9560668 9560984 + 0.833333 NA 3' UTR (NM_001008727, exon 4 of 4) 3' UTR (NM_001008727, exon 4 of 4) 22160 NR_134921 101928238 Hs.324978 NR_134920 ENSG00000278611 ZNF426-DT - ZNF426 divergent transcript ncRNA 223-15 chr2 144709736 144710155 + 0.833333 NA intron (NR_033870, intron 1 of 4) intron (NR_033870, intron 1 of 4) 41978 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 170.5-20 chr15 74664723 74665079 + 0.833333 NA intron (NM_001142443, intron 6 of 9) intron (NM_001142443, intron 6 of 9) 31123 NM_001142443 80153 Hs.96852 NM_025083 ENSG00000179151 EDC3 LSM16|MRT50|YJDC|YJEFN2|hYjeF_N2-15q23 enhancer of mRNA decapping 3 protein-coding 149.833-30 chr4 33193622 33193985 + 0.833333 NA Intergenic Intergenic 842765 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 150-65 chr5 33462095 33462338 + 0.833333 NA intron (NR_047677, intron 15 of 17) intron (NR_047677, intron 15 of 17) 21440 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 158-60 chr9 73922394 73922697 + 0.833333 NA Intergenic Intergenic -448986 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 260.5-12 chr2 212231379 212231876 + 0.833333 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 194733 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 236.167-14 chr3 68141291 68141640 + 0.833333 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 137218 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 241.167-12 chr5 65581745 65582202 + 0.833333 NA intron (NM_001278929, intron 6 of 9) intron (NM_001278929, intron 6 of 9) 18677 NM_001278927 23398 Hs.121432 NM_015342 ENSG00000113593 PPWD1 - peptidylprolyl isomerase domain and WD repeat containing 1 protein-coding 219.5-7 chr12 24881159 24881546 + 0.833333 NA exon (NM_001178093, exon 4 of 11) exon (NM_001178093, exon 4 of 11) 20870 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 214.333-36 chr5 53650158 53650641 + 0.833333 NA intron (NM_001318051, intron 3 of 3) MER39|LTR|ERV1 89760 NR_134473 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 172.667-39 chr2 162991716 162991966 + 0.833333 NA Intergenic Intergenic -153074 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 117.833-83 chr8 131618907 131619074 + 0.833333 NA Intergenic L1MC3|LINE|L1 -285103 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 322.333-2 chr18 62870389 62870861 + 0.833333 NA intron (NM_194449, intron 4 of 16) intron (NM_194449, intron 4 of 16) 155084 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 115.333-76 chr4 72954820 72955098 + 0.833333 NA Intergenic Intergenic 114757 NM_001297732 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 131.5-77 chr7 52773046 52773247 + 0.833333 NA Intergenic Intergenic -262487 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 232.833-9 chr2 21843402 21843734 + 0.833333 NA Intergenic Intergenic -132916 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 213.667-22 chr22 32421002 32421281 + 0.833333 NA intron (NM_174932, intron 11 of 14) intron (NM_174932, intron 11 of 14) -8894 NM_014306 51493 Hs.474643 NM_014306 ENSG00000100220 RTCB C22orf28|DJ149A16.6|FAAP|HSPC117 RNA 2',3'-cyclic phosphate and 5'-OH ligase protein-coding 165.333-15 chr12 44073530 44073797 + 0.833333 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 237582 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 152.167-28 chr2 84703624 84703854 + 0.833333 NA intron (NM_001370, intron 50 of 76) intron (NM_001370, intron 50 of 76) 177345 NM_001307978 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 202.667-17 chr17 57893570 57893907 + 0.833333 NA intron (NM_001271875, intron 1 of 10) MIR3|SINE|MIR 9651 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 134.833-68 chr8 130456173 130456432 + 0.833333 NA Intergenic Intergenic -12628 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 138-42 chr17 14860291 14860569 + 0.833333 NA Intergenic Intergenic -154375 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 129.5-65 chr4 107703539 107703749 + 0.833333 NA intron (NM_005443, intron 1 of 11) L1MA8|LINE|L1 16590 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 118-72 chr22 22010669 22011032 + 0.833333 NA intron (NR_135291, intron 4 of 6) MER81|DNA|hAT-Blackjack -28063 NM_001349852 8940 Hs.436401 NM_003935 ENSG00000100038 TOP3B TOP3B1 DNA topoisomerase III beta protein-coding 116.5-77 chr6 116857873 116858183 + 0.833333 NA Intergenic L1ME3|LINE|L1 -19214 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 116.167-85 chr9 99791186 99791614 + 0.833333 NA intron (NR_109802, intron 2 of 6) intron (NR_109802, intron 2 of 6) 28489 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 154.5-46 chr3 66413215 66413593 + 0.833333 NA intron (NM_015541, intron 5 of 18) intron (NM_015541, intron 5 of 18) 87017 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 244.333-27 chr6 119020352 119020829 + 0.833333 NA intron (NM_024581, intron 3 of 17) intron (NM_024581, intron 3 of 17) 48553 NR_030315 693128 NR_030315 ENSG00000207982 MIR548B MIRN548B microRNA 548b ncRNA 203.833-16 chr3 99076247 99076550 + 0.833333 NA Intergenic Intergenic -174703 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 192.5-30 chr3 18883680 18883944 + 0.833333 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -264698 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 187.5-40 chr5 65623061 65623486 + 0.833333 NA intron (NM_001656, intron 1 of 10) MER5B|DNA|hAT-Charlie 1060 NM_001656 373 Hs.792 NM_001656 ENSG00000113595 TRIM23 ARD1|ARFD1|RNF46 tripartite motif containing 23 protein-coding 142.167-15 chr10 130331132 130331369 + 0.833333 NA Intergenic Intergenic 194841 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 190.667-39 chr4 84072326 84072947 + 0.833333 NA intron (NR_125909, intron 7 of 8) MLT1K|LTR|ERVL-MaLR 226533 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 157.833-62 chr7 22389953 22390199 + 0.833333 NA Intergenic Intergenic -32922 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 155.833-64 chr7 67582421 67582671 + 0.833333 NA Intergenic MIRb|SINE|MIR 246570 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 175.833-4 chr1 224806867 224807131 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -122655 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 241.333-7 chr11 84395985 84396330 + 0.833333 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -78818 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 192.833-17 chr16 82640529 82640849 + 0.833333 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) 13720 NM_001257 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 135.167-85 chr7 42857900 42858175 + 0.833333 NA Intergenic Intergenic 53806 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 311.333-7 chr20 19466504 19466969 + 0.833333 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -182140 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 155.667-81 chr8 57403487 57403761 + 0.833333 NA Intergenic Tigger18a|DNA|TcMar-Tigger 59837 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 138.167-81 chrX 53133875 53134103 + 0.833333 NA intron (NR_145973, intron 3 of 3) intron (NR_145973, intron 3 of 3) 39832 NR_145974 102723508 Hs.633244 NR_110456 KANTR LINC01155|Spasm KDM5C adjacent transcript ncRNA 136-36 chr2 101354735 101355023 + 0.833333 NA intron (NM_153836, intron 3 of 3) intron (NM_153836, intron 3 of 3) 32624 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 164-20 chr16 66395319 66395715 + 0.833333 NA intron (NM_001795, intron 7 of 11) L1M6|LINE|L1 -13007 NR_046242 100505865 Hs.314372 NR_046242 LINC00920 - long intergenic non-protein coding RNA 920 ncRNA 188-12 chr10 104672992 104673243 + 0.833333 NA intron (NM_014978, intron 1 of 26) L1MB3|LINE|L1 -6901 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 145.833-59 chr4 59773968 59774163 + 0.833333 NA Intergenic Intergenic 760492 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 258.833-3 chr11 28199324 28199676 + 0.833333 NA intron (NM_001113528, intron 3 of 6) intron (NM_001113528, intron 3 of 6) 91112 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 157.167-7 chr1 182891900 182892218 + 0.833333 NA Intergenic L1MA3|LINE|L1 -52468 NR_148933 647070 Hs.191518 NR_148933 LOC647070 - uncharacterized LOC647070 ncRNA 127.333-72 chr22 29917751 29918043 + 0.833333 NA intron (NM_153051, intron 1 of 18) intron (NM_153051, intron 1 of 18) 34723 NM_021090 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 164.333-70 chr6 66397999 66398213 + 0.833333 NA Intergenic Intergenic 610227 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 182.5-12 chr14 64217066 64217386 + 0.833333 NA intron (NM_015180, intron 107 of 114) intron (NM_015180, intron 107 of 114) 1272 NM_182910 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 117-129 chrX 93692927 93693276 + 0.833333 NA intron (NM_001171110, intron 3 of 4) intron (NM_001171110, intron 3 of 4) 18895 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 169.5-63 chr6 160196423 160196817 + 0.833333 NA Intergenic L1MA5A|LINE|L1 62201 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 257-8 chr13 71297533 71298120 + 0.833333 NA Intergenic Intergenic 282685 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 142.167-66 chr5 160672259 160672671 + 0.833333 NA intron (NM_001366652, intron 5 of 24) L3|LINE|CR1 12926 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 164.5-21 chr15 82027728 82027990 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 18159 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 235.167-16 chr22 25844953 25845395 + 0.833333 NA intron (NM_001318245, intron 18 of 43) intron (NM_001318245, intron 18 of 43) 102986 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 302.333 chr1 103517044 103517707 + 0.833333 NA intron (NM_001347929, intron 1 of 5) intron (NM_001347929, intron 1 of 5) 8136 NM_001347929 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 211.167-26 chr4 72490652 72491231 + 0.833333 NA intron (NM_014243, intron 3 of 21) L1MA9|LINE|L1 78280 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 296.833-4 chr2 129840619 129841278 + 0.833333 NA Intergenic AluSz6|SINE|Alu 36543 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 201.5-25 chr3 116418060 116418375 + 0.833333 NA intron (NM_001318915, intron 1 of 8) L2c|LINE|L2 27270 NM_001318915 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 391.167 chr2 144059246 144060185 + 0.833333 NA intron (NM_001354355, intron 7 of 13) L2a|LINE|L2 122648 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 221-8 chr12 124141508 124141883 + 0.833333 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) -147469 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 157.833-4 chr1 186390140 186390514 + 0.833333 NA intron (NM_001164246, intron 5 of 12) intron (NM_001164246, intron 5 of 12) -10245 NM_022375 10896 Hs.679230 NM_022375 ENSG00000262180 OCLM TISR oculomedin protein-coding 227-7 chr14 35033775 35034282 + 0.833333 NA Intergenic THE1B-int|LTR|ERVL-MaLR -10879 NM_001079519 283635 Hs.446357 NM_173607 ENSG00000151327 FAM177A1 C14orf24 family with sequence similarity 177 member A1 protein-coding 170.333-35 chr2 16652587 16653065 + 0.833333 NA intron (NM_030797, intron 1 of 11) intron (NM_030797, intron 1 of 11) 13008 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 113.667-44 chr15 68048875 68049116 + 0.833333 NA Intergenic Tigger2a|DNA|TcMar-Tigger -5184 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 138.167-43 chr2 163860820 163861075 + 0.833333 NA Intergenic MIR|SINE|MIR -124939 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 169.5-17 chr13 32534854 32535275 + 0.833333 NA intron (NM_001278432, intron 2 of 9) intron (NM_001278432, intron 2 of 9) 3731 NM_001320836 10443 Hs.507680 NM_014887 ENSG00000244754 N4BP2L2 92M18.3|CG005|CG016|PFAAP5 NEDD4 binding protein 2 like 2 protein-coding 198.833-22 chr5 34556871 34557314 + 0.833333 NA Intergenic MER103C|DNA|hAT-Charlie -99236 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 142.167-53 chr21 27330843 27331129 + 0.833333 NA Intergenic Intergenic -363898 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 163.167-6 chr11 105616719 105617237 + 0.833333 NA intron (NR_046356, intron 2 of 16) intron (NR_046356, intron 2 of 16) 6272 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 179-17 chr18 3840187 3840507 + 0.833333 NA intron (NM_001242761, intron 4 of 11) MLT1D|LTR|ERVL-MaLR 5011 NM_001242765 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 163.167-50 chr9 124383338 124383730 + 0.833333 NA intron (NM_002799, intron 6 of 7) intron (NM_002799, intron 6 of 7) 30061 NR_027406 100129034 Hs.654980 NR_027406 LOC100129034 - uncharacterized LOC100129034 ncRNA 255.5-6 chr12 14676472 14676932 + 0.833333 NA intron (NM_004963, intron 7 of 26) intron (NM_004963, intron 7 of 26) 19897 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 128-85 chr7 33337445 33337665 + 0.833333 NA intron (NM_198428, intron 10 of 22) intron (NM_198428, intron 10 of 22) 207991 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 113.167-78 chr8 132260508 132260705 + 0.833333 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -155341 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 188.667-64 chr8 68407953 68408568 + 0.833333 NA intron (NR_146187, intron 1 of 13) MER1A|DNA|hAT-Charlie -76769 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 175.5-51 chr5 107683542 107683919 + 0.833333 NA Intergenic L2a|LINE|L2 -12793 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 200.5 chr1 74528704 74529168 + 0.833333 NA intron (NM_015978, intron 23 of 24) L1MC4|LINE|L1 -16322 NM_001364666 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 176.667-49 chr3 88148310 88148665 + 0.833333 NA intron (NM_001195308, intron 1 of 3) intron (NM_001195308, intron 1 of 3) 1379 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 115.167-98 chr7 43730453 43730755 + 0.833333 NA Intergenic Intergenic -1063 NM_001350924 55744 Hs.268887 NM_018224 ENSG00000106603 COA1 C7orf44|MITRAC15 cytochrome c oxidase assembly factor 1 homolog protein-coding 179.167-11 chr12 9584878 9585158 + 0.833333 NA Intergenic Intergenic 22898 NM_002258 3820 Hs.169824 NM_002258 ENSG00000111796 KLRB1 CD161|CLEC5B|NKR|NKR-P1|NKR-P1A|NKRP1A|hNKR-P1A killer cell lectin like receptor B1 protein-coding 200.167-33 chr3 37610634 37611118 + 0.833333 NA intron (NM_002207, intron 15 of 27) intron (NM_002207, intron 15 of 27) 158735 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 298.333-3 chr11 54751997 54752602 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 45467 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 230.5-3 chr11 12926990 12927335 + 0.833333 NA intron (NM_021961, intron 11 of 12) intron (NM_021961, intron 11 of 12) 62386 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 115.667-3 chr1 60285802 60285987 + 0.833333 NA Intergenic Intergenic -212124 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 215.333-40 chr5 76485034 76485559 + 0.833333 NA intron (NM_006633, intron 2 of 35) intron (NM_006633, intron 2 of 35) -62113 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 158.5-82 chr8 77434488 77434710 + 0.833333 NA Intergenic L1PBa|LINE|L1 -16098 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 169.167-38 chr7 35700840 35701113 + 0.833333 NA Intergenic Intergenic 5770 NR_136255 101930085 Hs.599851 NR_136255 ENSG00000271122 LOC101930085 - uncharacterized LOC101930085 ncRNA 199.667-18 chr15 79988958 79989441 + 0.833333 NA Intergenic Intergenic -18003 NM_004049 597 Hs.227817 NM_004049 ENSG00000140379 BCL2A1 ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1 BCL2 related protein A1 protein-coding 158.167-18 chr18 13037002 13037217 + 0.833333 NA intron (NM_032142, intron 11 of 44) intron (NM_032142, intron 11 of 44) 45747 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 149-38 chr2 77787844 77788079 + 0.833333 NA intron (NR_110288, intron 3 of 3) intron (NR_110288, intron 3 of 3) -127973 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 158.167-23 chr2 71652375 71652652 + 0.833333 NA intron (NM_001130985, intron 41 of 54) intron (NM_001130985, intron 41 of 54) 185814 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 200.333-11 chr15 83792475 83793235 + 0.833333 NA intron (NM_207517, intron 4 of 29) L1MA8|LINE|L1 138732 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 158.5-32 chr19 43806493 43806808 + 0.833333 NA intron (NM_182573, intron 1 of 4) AluSz|SINE|Alu -4203 NM_001031749 284348 Hs.44289 NM_182573 ENSG00000159871 LYPD5 PRO4356 LY6/PLAUR domain containing 5 protein-coding 148-87 chrX 38103038 38103227 + 0.833333 NA intron (NM_001163334, intron 10 of 16) intron (NM_001163334, intron 10 of 16) 69598 NM_001163334 94122 Hs.662334 NM_138780 ENSG00000147041 SYTL5 slp5 synaptotagmin like 5 protein-coding 223.833-11 chr10 96577583 96577992 + 0.833333 NA intron (NM_020123, intron 1 of 14) L2b|LINE|L2 9225 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 168.5-9 chr10 63936449 63936818 + 0.833333 NA Intergenic MLT1A1|LTR|ERVL-MaLR -414743 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 296.5-11 chr9 27547867 27548580 + 0.833333 NA 3' UTR (NM_018325, exon 11 of 11) 3' UTR (NM_018325, exon 11 of 11) -18409 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 153.833-36 chr20 31797897 31798110 + 0.833333 NA intron (NM_012112, intron 16 of 17) FLAM_C|SINE|Alu -21372 NM_033118 85366 Hs.86092 NM_033118 ENSG00000101306 MYLK2 KMLC|MLCK|MLCK2|skMLCK myosin light chain kinase 2 protein-coding 207.5-27 chr3 103610427 103610891 + 0.833333 NA Intergenic Intergenic -86543 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 153-38 chr4 54003714 54003935 + 0.833333 NA Intergenic AluSx|SINE|Alu -16542 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 115.667-59 chr2 176258378 176258539 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -10984 NM_001319097 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 131.667-8 chr1 208043894 208044100 + 0.833333 NA intron (NM_025179, intron 20 of 31) intron (NM_025179, intron 20 of 31) -132872 NM_001025109 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 232.667-8 chr12 105172424 105172819 + 0.833333 NA TTS (NM_018171) TTS (NM_018171) 60784 NM_001251905 55198 Hs.506603 NM_018171 ENSG00000136044 APPL2 DIP13B adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 protein-coding 149.667-55 chr4 30564198 30564415 + 0.833333 NA Intergenic L1MA6|LINE|L1 -156063 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 131.167-59 chr5 4930814 4931143 + 0.833333 NA Intergenic MER65A|LTR|ERV1 -103381 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 211.333-40 chr5 42152861 42153242 + 0.833333 NA Intergenic Intergenic 22294 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 239.333-18 chr4 99750694 99751083 + 0.833333 NA Intergenic MER2|DNA|TcMar-Tigger -65939 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 211.833-19 chr4 32532886 32533276 + 0.833333 NA Intergenic L1MA1|LINE|L1 182043 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 246.833-11 chr5 5368165 5368533 + 0.833333 NA Intergenic Intergenic -54328 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 161.333-37 chr2 30644993 30645288 + 0.833333 NA TTS (NM_001002257) TTS (NM_001002257) 162306 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 207.5-18 chr2 67500024 67500428 + 0.833333 NA Intergenic Intergenic 102893 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 199.5-43 chr7 49660850 49661231 + 0.833333 NA Intergenic AluSx3|SINE|Alu -112598 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 125.833-45 chr2 119189752 119190213 + 0.833333 NA Intergenic Intergenic -31231 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 313.833-7 chr7 11452566 11453350 + 0.833333 NA intron (NM_015204, intron 11 of 26) intron (NM_015204, intron 11 of 26) 379240 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 137.5-12 chr10 31477857 31478048 + 0.833333 NA intron (NM_001323678, intron 2 of 6) L1PB4|LINE|L1 -78197 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 177.333-18 chr13 62496311 62496791 + 0.833333 NA Intergenic Intergenic 172894 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 227-8 chr15 50046788 50047169 + 0.833333 NA intron (NR_073597, intron 4 of 26) intron (NR_073597, intron 4 of 26) 66401 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 151.833-26 chr2 26100078 26100423 + 0.833333 NA intron (NM_016131, intron 2 of 5) intron (NM_016131, intron 2 of 5) 66166 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 170-14 chr12 87915936 87916369 + 0.833333 NA Intergenic Intergenic 113249 NM_152589 160419 Hs.112930 NM_152589 ENSG00000165805 C12orf50 - chromosome 12 open reading frame 50 protein-coding 122.333-46 chr19 29030781 29030991 + 0.833333 NA Intergenic MLT1A1|LTR|ERVL-MaLR 28331 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 143.167-72 chr6 130734307 130734530 + 0.833333 NA Intergenic MER65A|LTR|ERV1 -92987 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 203.5-36 chr6 83177804 83178086 + 0.833333 NA intron (NR_159812, intron 8 of 14) MER31A|LTR|ERV1 15320 NM_001367286 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 145.167-71 chr7 84187642 84187898 + 0.833333 NA intron (NM_006080, intron 1 of 16) intron (NM_006080, intron 1 of 16) 7019 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 181.334-2 chr4 30727904 30728642 + 0.833333 NA intron (NM_032457, intron 1 of 2) (TA)n|Simple_repeat|Simple_repeat 7904 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 176.5-5 chr10 27191539 27192082 + 0.833333 NA intron (NM_001352570, intron 12 of 12) AluSq2|SINE|Alu 36986 NM_001172303 84930 Hs.276905 NM_032844 ENSG00000120539 MASTL GREATWALL|GW|GWL|MAST-L|THC2 microtubule associated serine/threonine kinase like protein-coding 202.833-31 chr8 113330721 113331061 + 0.833333 NA intron (NM_001363185, intron 1 of 66) L1MB7|LINE|L1 46261 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 150.333-18 chr10 131979446 131979716 + 0.833333 NA intron (NM_004052, intron 1 of 5) intron (NM_004052, intron 1 of 5) 2432 NM_004052 664 Hs.144873 NM_004052 ENSG00000176171 BNIP3 NIP3 BCL2 interacting protein 3 protein-coding 188.5-34 chr2 164774203 164774507 + 0.833333 NA intron (NM_001365670, intron 2 of 13) intron (NM_001365670, intron 2 of 13) -66394 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 142.5-51 chr3 160647846 160648042 + 0.833333 NA Intergenic Intergenic -29216 NM_025047 80117 Hs.287702 NM_025047 ENSG00000179674 ARL14 ARF7 ADP ribosylation factor like GTPase 14 protein-coding 134.667-33 chr15 45904062 45904366 + 0.833333 NA intron (NR_135680, intron 2 of 4) intron (NR_135680, intron 2 of 4) 199019 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 142.167-55 chr3 1178730 1178953 + 0.833333 NA intron (NM_001289080, intron 2 of 22) L1MCc|LINE|L1 85817 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 231.167-8 chr17 59296946 59297475 + 0.833333 NA Intergenic Intergenic -34445 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 234-11 chr14 71360330 71360744 + 0.833333 NA intron (NM_001354285, intron 2 of 24) intron (NM_001354285, intron 2 of 24) -37800 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 170.333-64 chr6 77763611 77763915 + 0.833333 NA intron (NM_001282136, intron 3 of 4) L1M3|LINE|L1 110724 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 174.167-7 chr10 59003127 59003421 + 0.833333 NA Intergenic Intergenic 3756 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 191-17 chr17 16141450 16141779 + 0.833333 NA intron (NM_001190440, intron 10 of 44) intron (NM_001190440, intron 10 of 44) 11582 NR_145787 109623477 NR_145787 SNORD163 - small nucleolar RNA, C/D box 163 snoRNA 142-54 chr20 47022035 47022312 + 0.833333 NA intron (NM_172110, intron 5 of 13) intron (NM_172110, intron 5 of 13) 127330 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 184.833-28 chr6 36861402 36861640 + 0.833333 NA intron (NM_016059, intron 2 of 3) MER8|DNA|TcMar-Tigger -10323 NM_001286636 221477 Hs.433381 NM_152734 ENSG00000198663 C6orf89 BRAP|PS1TP5TP1 chromosome 6 open reading frame 89 protein-coding 212-43 chr9 88065215 88065554 + 0.833333 NA Intergenic LTR66|LTR|ERVL 12516 NR_135137 102724156 Hs.633031 NR_135137 LOC102724156 - uncharacterized LOC102724156 ncRNA 155.5-39 chr3 196685130 196685399 + 0.833333 NA Intergenic Intergenic 26986 NM_032898 84984 Hs.282800 NM_032898 ENSG00000174007 CEP19 C3orf34|MOSPGF centrosomal protein 19 protein-coding 113.667-54 chr18 2257735 2257951 + 0.833333 NA Intergenic Intergenic 313662 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 177.5-56 chr3 196798693 196799079 + 0.833333 NA intron (NM_002577, intron 2 of 14) L1MEf|LINE|L1 59029 NM_002577 5062 Hs.518530 NM_002577 ENSG00000180370 PAK2 PAK65|PAKgamma p21 (RAC1) activated kinase 2 protein-coding 179.333-18 chr14 20997406 20997738 + 0.833333 NA TTS (NM_001029991) TTS (NM_001029991) 1591 NR_110139 101929718 Hs.706252 NR_110139 ENSG00000258471 LOC101929718 - uncharacterized LOC101929718 ncRNA 218.167-6 chr11 12348894 12349324 + 0.833333 NA intron (NM_032867, intron 6 of 8) Charlie26a|DNA|hAT-Charlie -28462 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 120-17 chr11 48052805 48053036 + 0.833333 NA intron (NM_001098503, intron 1 of 8) intron (NM_001098503, intron 1 of 8) -43862 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 167.667-24 chr14 26375674 26376050 + 0.833333 NA Intergenic Intergenic 177568 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 207.333-49 chr7 41430591 41430882 + 0.833333 NA Intergenic L2|LINE|L2 -263183 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 145.5-69 chr6 75792519 75792778 + 0.833333 NA intron (NM_001368139, intron 2 of 9) intron (NM_001368139, intron 2 of 9) 43409 NM_001368140 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 145.5-51 chr4 33380077 33380505 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR 659602 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 224-15 chr15 80995592 80996309 + 0.833333 NA Intergenic Intergenic 1523 NR_039739 100616181 NR_039739 ENSG00000265855 MIR4514 - microRNA 4514 ncRNA 127-61 chr21 38117510 38117969 + 0.833333 NA intron (NR_147130, intron 2 of 2) intron (NR_147130, intron 2 of 2) 3621 NR_147130 10281 Hs.23251 NM_005867 ENSG00000184029 DSCR4 DCRB|DSCRB Down syndrome critical region 4 ncRNA 167.833-28 chr2 79062058 79062439 + 0.833333 NA Intergenic Intergenic 25745 NM_006507 5968 Hs.4158 NM_006507 ENSG00000172023 REG1B PSPS2|REGH|REGI-BETA|REGL regenerating family member 1 beta protein-coding 258.5-19 chr6 42401117 42401542 + 0.833333 NA intron (NM_001297573, intron 2 of 17) intron (NM_001297573, intron 2 of 17) 50722 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 245.5-17 chr4 85091410 85091858 + 0.833333 NA Intergenic Intergenic 124150 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 175-55 chr6 137511197 137511426 + 0.833333 NA Intergenic Intergenic -16917 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 151.333-91 chr8 127607055 127607321 + 0.833333 NA Intergenic L2a|LINE|L2 -125049 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 120-83 chr4 112371824 112372212 + 0.833333 NA intron (NM_001102406, intron 2 of 15) MIR3|SINE|MIR 74649 NM_001102406 80216 Hs.652825 NM_025144 ENSG00000073331 ALPK1 8430410J10Rik|LAK alpha kinase 1 protein-coding 144.5-78 chr5 146493641 146493928 + 0.833333 NA intron (NM_006706, intron 15 of 21) intron (NM_006706, intron 15 of 21) 22329 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 139.833-55 chr3 155683663 155683830 + 0.833333 NA intron (NM_001349252, intron 2 of 24) intron (NM_001349252, intron 2 of 24) -7403 NM_001130961 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 224.833-8 chr18 66041303 66041723 + 0.833333 NA Intergenic HAL1ME|LINE|L1 290501 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 271.667-2 chr12 862211 862628 + 0.833333 NA intron (NM_018979, intron 8 of 27) intron (NM_018979, intron 8 of 27) 70657 NM_001297420 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 152.667-29 chr14 64218401 64218773 + 0.833333 NA intron (NM_015180, intron 108 of 114) intron (NM_015180, intron 108 of 114) 2633 NM_182910 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 268.167-3 chr11 98280532 98280917 + 0.833333 NA Intergenic L1MD2|LINE|L1 -740225 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 184.5-48 chr7 46092166 46092540 + 0.833333 NA Intergenic L1PA15|LINE|L1 -171081 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 214.667-36 chr7 79448471 79448929 + 0.833333 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -4257 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 171.167-45 chr5 25779743 25780110 + 0.833333 NA Intergenic Intergenic 588973 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 205-11 chr17 59232729 59233173 + 0.833333 NA intron (NM_182569, intron 1 of 9) AluSz6|SINE|Alu 12440 NM_001165993 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 135-45 chr2 187390015 187390424 + 0.833333 NA intron (NM_005795, intron 1 of 14) intron (NM_005795, intron 1 of 14) 58033 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 176.167-26 chr3 28188764 28189040 + 0.833333 NA Intergenic Tigger2|DNA|TcMar-Tigger -52717 NR_138585 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 173.833-60 chr8 120171388 120171730 + 0.833333 NA intron (NM_021110, intron 5 of 47) L1MEd|LINE|L1 46457 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 154.167-15 chr12 24187363 24187812 + 0.833333 NA intron (NM_152989, intron 4 of 17) L2|LINE|L2 -24834 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 212.167-13 chr3 104175752 104176053 + 0.833333 NA Intergenic Intergenic -651786 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 178.667-47 chr4 73629209 73629594 + 0.833333 NA Intergenic L1MA9|LINE|L1 -8770 NM_201431 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 137-68 chr3 78878890 78879085 + 0.833333 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 140472 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 131.167-25 chr14 50772873 50773139 + 0.833333 NA exon (NM_020921, exon 8 of 31) exon (NM_020921, exon 8 of 31) -48791 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 164-14 chr12 110230596 110230880 + 0.833333 NA Intergenic Intergenic -50509 NM_001681 488 Hs.506759 NM_001681 ENSG00000174437 ATP2A2 ATP2B|DAR|DD|SERCA2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 protein-coding 171.5-42 chr21 22508772 22509141 + 0.833333 NA Intergenic L1PA16|LINE|L1 410339 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 191.333-7 chr13 24535155 24535510 + 0.833333 NA Intergenic Intergenic 6388 NR_158454 105370295 NR_158453 LOC105370295 - uncharacterized LOC105370295 ncRNA 231.333-26 chr4 35911384 35911819 + 0.833333 NA Intergenic Intergenic 332338 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 271.333-12 chr20 45027800 45028328 + 0.833333 NA intron (NM_006282, intron 10 of 10) L1MA4|LINE|L1 61552 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 213.333-4 chr1 197809338 197809749 + 0.833333 NA Intergenic Intergenic -34063 NR_125340 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 185.167-19 chr18 13718381 13718778 + 0.833333 NA intron (NM_001098801, intron 1 of 4) intron (NM_001098801, intron 1 of 4) 7979 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 252-9 chr20 48056589 48057013 + 0.833333 NA Intergenic Intergenic -66684 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 213.167-35 chr8 133850851 133851166 + 0.833333 NA Intergenic MIRb|SINE|MIR -35488 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 137.667-30 chr14 73514255 73514561 + 0.833333 NA intron (NM_001220484, intron 5 of 17) intron (NM_001220484, intron 5 of 17) -22735 NM_001037161 641371 Hs.446685 NM_001037161 ENSG00000184227 ACOT1 ACH2|CTE-1|LACH2 acyl-CoA thioesterase 1 protein-coding 289.833-4 chr2 215098812 215099307 + 0.833333 NA intron (NR_103740, intron 2 of 54) MLT1F1|LTR|ERVL-MaLR 39567 NM_173076 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 234.834-10 chr5 28760753 28761458 + 0.833333 NA Intergenic L1PA3|LINE|L1 -165765 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 182.333-4 chr1 85260210 85260616 + 0.833333 NA promoter-TSS (NM_198077) promoter-TSS (NM_198077) -751 NM_198077 148423 Hs.26226 NM_198077 ENSG00000162642 C1orf52 gm117 chromosome 1 open reading frame 52 protein-coding 261.667-21 chr18 12739714 12740271 + 0.833333 NA intron (NR_110763, intron 1 of 1) L1MB7|LINE|L1 9430 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 169.333-6 chr10 24007103 24007438 + 0.833333 NA 5' UTR (NM_001098500, exon 2 of 19) 5' UTR (NM_001098500, exon 2 of 19) -201521 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 173.333-75 chr9 92005271 92005615 + 0.833333 NA Intergenic AluSc|SINE|Alu -55215 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 122.667-28 chr15 39409814 39410011 + 0.833333 NA Intergenic Intergenic 159243 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 192.333-41 chr5 16310845 16311294 + 0.833333 NA Intergenic Intergenic 130033 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 144.833-40 chr20 48720554 48720847 + 0.833333 NA intron (NM_020820, intron 5 of 39) intron (NM_020820, intron 5 of 39) 107299 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 148.833-4 chr10 35149966 35150368 + 0.833333 NA intron (NM_001352467, intron 2 of 3) intron (NM_001352467, intron 2 of 3) 12385 NM_183011 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 181.333-32 chr2 186702497 186702917 + 0.833333 NA intron (NM_177454, intron 1 of 7) LFSINE_Vert|SINE|tRNA 8647 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 231.666-3 chr7 961572 962101 + 0.833333 NA Intergenic Intergenic -6429 NM_001284308 11033 Hs.602573 NM_006869 ENSG00000105963 ADAP1 CENTA1|GCS1L|p42IP4 ArfGAP with dual PH domains 1 protein-coding 190.5-40 chr4 58654258 58654593 + 0.833333 NA Intergenic MLT1A1|LTR|ERVL-MaLR -118097 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 245.167-5 chr21 16482795 16483169 + 0.833333 NA intron (NR_136550, intron 1 of 3) L1PB1|LINE|L1 -52590 NR_136547 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 139.333-90 chr8 85365495 85365938 + 0.833333 NA intron (NM_001738, intron 1 of 8) intron (NM_001738, intron 1 of 8) 12397 NM_001128830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 169.5-42 chr22 33799854 33800190 + 0.833333 NA intron (NM_001362953, intron 1 of 14) intron (NM_001362953, intron 1 of 14) 75036 NR_038950 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 192.5-44 chr6 43966811 43967127 + 0.833333 NA Intergenic Intergenic -33616 NR_160955 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 ncRNA 286-3 chr1 183262062 183262699 + 0.833333 NA intron (NM_170706, intron 8 of 10) intron (NM_170706, intron 8 of 10) 42494 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 197.167-54 chr7 46397187 46397478 + 0.833333 NA Intergenic Intergenic 299790 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 212.833-11 chr2 205852708 205853341 + 0.833333 NA Intergenic Intergenic 170523 NM_018534 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 312.5-4 chr17 61072498 61073025 + 0.833333 NA intron (NM_001330413, intron 20 of 25) L2a|LINE|L2 294943 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 198.167-11 chr17 29714397 29714790 + 0.833333 NA intron (NM_033389, intron 2 of 14) L2|LINE|L2 46839 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 140.167-11 chr12 4745613 4745821 + 0.833333 NA intron (NM_017417, intron 5 of 10) intron (NM_017417, intron 5 of 10) 25317 NM_017417 26290 Hs.511985 NM_017417 ENSG00000130035 GALNT8 GALNAC-T8 polypeptide N-acetylgalactosaminyltransferase 8 protein-coding 119.167-63 chr3 114933817 114934031 + 0.833333 NA intron (NM_001348805, intron 3 of 10) L2c|LINE|L2 -33299 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 129.5-28 chr17 35651082 35651342 + 0.833333 NA intron (NM_001030006, intron 13 of 21) intron (NM_001030006, intron 13 of 21) 63890 NM_001282 163 Hs.514819 NM_001282 ENSG00000006125 AP2B1 ADTB2|AP105B|AP2-BETA|CLAPB1 adaptor related protein complex 2 subunit beta 1 protein-coding 264.667-13 chr18 3149240 3149784 + 0.833333 NA intron (NM_019856, intron 12 of 36) intron (NM_019856, intron 12 of 36) 70456 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 121.167-78 chr6 169138372 169138762 + 0.833333 NA Intergenic L1MA2|LINE|L1 23734 NR_132622 101929484 Hs.364166 NR_132622 ENSG00000223485 LINC01615 - long intergenic non-protein coding RNA 1615 ncRNA 280.667-7 chr15 46231254 46231693 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL 526278 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 157.833-9 chr10 113921267 113921493 + 0.833333 NA Intergenic Intergenic 66719 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 208.333-18 chr17 59010367 59010870 + 0.833333 NA intron (NR_148346, intron 22 of 23) AluSx1|SINE|Alu 96262 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 230 chr10 16443122 16443643 + 0.833333 NA intron (NM_001261837, intron 2 of 4) MLT1B|LTR|ERVL-MaLR 6439 NM_001261837 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 132.333-108 chr8 115224641 115224878 + 0.833333 NA Intergenic (TATAA)n|Simple_repeat|Simple_repeat 443254 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 122.833-61 chr3 197089549 197089782 + 0.833333 NA intron (NM_001366216, intron 14 of 23) intron (NM_001366216, intron 14 of 23) -59848 NM_005929 4241 Hs.184727 NM_005929 ENSG00000163975 MELTF CD228|MAP97|MFI2|MTF1|MTf melanotransferrin protein-coding 136 chr1 34811793 34812083 + 0.833333 NA Intergenic L1MEd|LINE|L1 18939 NM_002060 2701 Hs.296310 NM_002060 ENSG00000187513 GJA4 CX37 gap junction protein alpha 4 protein-coding 343.5-9 chr7 9502625 9503454 + 0.833333 NA Intergenic Intergenic -131231 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 210.167-10 chr13 98341985 98342352 + 0.833333 NA intron (NM_005766, intron 2 of 26) intron (NM_005766, intron 2 of 26) 133644 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 165.167-5 chr10 32202318 32202554 + 0.833333 NA Intergenic AluSc8|SINE|Alu 144722 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 159.333-18 chr10 124164680 124164944 + 0.833333 NA Intergenic Intergenic -71214 NM_001270764 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 122.667-8 chr10 57419257 57419652 + 0.833333 NA Intergenic L1ME2z|LINE|L1 -114895 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 135.5-14 chr10 108876708 108877074 + 0.833333 NA Intergenic Intergenic -807598 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 138.667-116 chrX 12013135 12013458 + 0.833333 NA intron (NM_001368398, intron 3 of 18) intron (NM_001368398, intron 3 of 18) -52245 NM_001368402 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 294.167 chr1 89102578 89102943 + 0.833333 NA Intergenic AluSz|SINE|Alu 23354 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 244.833-4 chr11 78817120 78817524 + 0.833333 NA intron (NM_001098816, intron 12 of 33) intron (NM_001098816, intron 12 of 33) -242458 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 139.833-76 chr8 124763796 124764140 + 0.833333 NA Intergenic Intergenic -35461 NM_014751 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 405.833-2 chr3 136366234 136366842 + 0.833333 NA intron (NM_005862, intron 25 of 33) intron (NM_005862, intron 25 of 33) 116198 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 199.334-5 chr22 34764327 34765226 + 0.833333 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 233140 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 129.167-37 chr2 20143199 20143385 + 0.833333 NA Intergenic Intergenic 81838 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 133.167-24 chr16 23046425 23046659 + 0.833333 NA Intergenic HAL1ME|LINE|L1 102728 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 166.833-41 chr8 77319988 77320456 + 0.833333 NA Intergenic Intergenic -130475 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 167.833-51 chr6 85444517 85445011 + 0.833333 NA Intergenic AluSx1|SINE|Alu -4820 NM_001204813 4907 Hs.153952 NM_002526 ENSG00000135318 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase ecto protein-coding 174-63 chrX 75695986 75696341 + 0.833333 NA Intergenic THE1B-int|LTR|ERVL-MaLR 46916 NR_030737 286495 Hs.567832 NR_030737 TTC3P1 RNF105L|TTC3L tetratricopeptide repeat domain 3 pseudogene 1 pseudo 234.333-29 chr5 42704993 42705453 + 0.833333 NA intron (NM_001242403, intron 6 of 9) L1MA8|LINE|L1 -51595 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 160.5-50 chr6 55618902 55619269 + 0.833333 NA Intergenic HAL1|LINE|L1 -39871 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 211.167-24 chr4 3096702 3096981 + 0.833333 NA intron (NM_002111, intron 2 of 66) AluJr|SINE|Alu 22160 NM_002111 3064 Hs.518450 NM_002111 ENSG00000197386 HTT HD|IT15|LOMARS huntingtin protein-coding 222.666 chr2 24644208 24644792 + 0.833333 NA intron (NM_001362950, intron 4 of 23) intron (NM_001362950, intron 4 of 23) 60023 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 255.333-13 chr20 55635423 55635907 + 0.833333 NA Intergenic Intergenic -208468 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 174.667-45 chr4 39660731 39661206 + 0.833333 NA Intergenic MLT2B1|LTR|ERVL -22103 NM_001317896 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 185.5-38 chr5 3037352 3037695 + 0.833333 NA Intergenic L1MC|LINE|L1 119669 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 114.833-49 chr4 74311961 74312206 + 0.833333 NA intron (NR_073114, intron 2 of 5) intron (NR_073114, intron 2 of 5) 3613 NM_001270993 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 264.333-6 chr12 59410258 59410895 + 0.833333 NA Intergenic Intergenic -185453 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 256.5-25 chr4 96782778 96783433 + 0.833333 NA intron (NR_147149, intron 3 of 3) L2b|LINE|L2 472402 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 133.5-52 chr5 10884366 10884588 + 0.833333 NA Intergenic L1PA7|LINE|L1 -123243 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 163-42 chr4 21840525 21840800 + 0.833333 NA intron (NM_147182, intron 1 of 8) intron (NM_147182, intron 1 of 8) 12526 NR_002813 359822 Hs.354058 NR_002813 ENSG00000280650 KCNIP4-IT1 NCRNA00099|UM9(5)|UM9-5 KCNIP4 intronic transcript 1 ncRNA 158.5-12 chr10 100066325 100066705 + 0.833333 NA intron (NM_001308, intron 3 of 8) intron (NM_001308, intron 3 of 8) 15354 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 139.333-35 chr14 48269916 48270146 + 0.833333 NA Intergenic L1MC1|LINE|L1 -475017 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 131.667-134 chr9 89043139 89043382 + 0.833333 NA intron (NM_016848, intron 9 of 11) intron (NM_016848, intron 9 of 11) 51792 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 137.5-97 chr8 135399524 135399770 + 0.833333 NA Intergenic Intergenic -57809 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 196.667-51 chr7 42959080 42959520 + 0.833333 NA Intergenic HERV35I-int|LTR|ERV1 26924 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 194.667-46 chr3 190052223 190052718 + 0.833333 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 68427 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 178.667-60 chr6 122600422 122600674 + 0.833333 NA intron (NM_181794, intron 3 of 6) L1MEc|LINE|L1 -9684 NM_032471 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 219.166 chr2 104037195 104037709 + 0.833333 NA Intergenic Intergenic 370880 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 132-70 chr5 44046732 44047069 + 0.833333 NA Intergenic L1PA11|LINE|L1 -341832 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 135.167-84 chr7 23252337 23252843 + 0.833333 NA intron (NM_001005340, intron 1 of 10) L1MEc|LINE|L1 5815 NM_001005340 10457 Hs.190495 NM_002510 ENSG00000136235 GPNMB HGFIN|NMB|PLCA3 glycoprotein nmb protein-coding 233.833-14 chr6 69591972 69592515 + 0.833333 NA Intergenic L1P4|LINE|L1 204223 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 177.5-14 chr11 99768679 99769047 + 0.833333 NA intron (NM_175566, intron 1 of 21) L1MC4|LINE|L1 212718 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 140.833-6 chr10 55535556 55535826 + 0.833333 NA intron (NM_001354404, intron 2 of 34) LTR37B|LTR|ERV1 -63351 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 143.5-87 chr8 108100851 108101051 + 0.833333 NA Intergenic THE1C|LTR|ERVL-MaLR -17331 NM_178565 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 187.833-6 chr10 68295788 68296096 + 0.833333 NA intron (NM_001033083, intron 4 of 8) AluSx1|SINE|Alu -35751 NM_001322438 3189 Hs.643472 NM_012207 ENSG00000096746 HNRNPH3 2H9|HNRPH3 heterogeneous nuclear ribonucleoprotein H3 protein-coding 139.333-46 chr17 60682443 60682669 + 0.833333 NA intron (NM_001330413, intron 2 of 25) AluSz|SINE|Alu 4705 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 300.833-3 chr12 24579694 24580096 + 0.833333 NA intron (NR_029451, intron 1 of 3) MLT1C|LTR|ERVL-MaLR 4273 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 195.334-2 chr10 57366004 57366672 + 0.833333 NA Intergenic Intergenic -61779 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 144.667-92 chr8 48470530 48470723 + 0.833333 NA Intergenic L1MA8|LINE|L1 -80941 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 223.5-10 chr15 62228591 62229105 + 0.833333 NA Intergenic Intergenic 19947 NR_136885 255180 Hs.370479 NM_173805 GOLGA2P11 - GOLGA2 pseudogene 11 pseudo 196-63 chr8 90706880 90707261 + 0.833333 NA Intergenic L1PREC2|LINE|L1 -60987 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 122.667-66 chr3 87893252 87893547 + 0.833333 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -89177 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 151-75 chr8 29021900 29022107 + 0.833333 NA intron (NM_001324384, intron 6 of 10) L1MC5a|LINE|L1 130689 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 165.667-48 chr4 61338677 61339076 + 0.833333 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 136704 NM_001371342 168.167-3 chr1 196668181 196668621 + 0.833333 NA intron (NM_001014975, intron 1 of 9) L1MEg|LINE|L1 16523 NM_000186 3075 Hs.363396 NM_000186 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 162.833-30 chr3 159368038 159368268 + 0.833333 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 85507 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 114.167-85 chr6 61903028 61903222 + 0.833333 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 328995 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 162.667-5 chr1 207693051 207693554 + 0.833333 NA intron (NM_175710, intron 4 of 11) AluSx|SINE|Alu 48169 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 181.5-39 chr3 58555311 58555763 + 0.833333 NA Intergenic MLT1J2|LTR|ERVL-MaLR -18347 NM_003500 8309 Hs.444959 NM_003500 ENSG00000168306 ACOX2 BCOX|BRCACOX|BRCOX|CBAS6|THCCox acyl-CoA oxidase 2 protein-coding 121-5 chr1 239657951 239658161 + 0.833333 NA intron (NM_001347716, intron 4 of 7) intron (NM_001347716, intron 4 of 7) 28983 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 118.833-2 chr1 86689629 86689885 + 0.833333 NA intron (NR_135837, intron 4 of 4) intron (NR_135837, intron 4 of 4) 14736 NR_135838 105378828 Hs.175285 NR_135837 ENSG00000261737 CLCA4-AS1 - CLCA4 antisense RNA 1 ncRNA 240.167-13 chr3 65731577 65731995 + 0.833333 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -162030 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 146.5-26 chr14 48881022 48881290 + 0.833333 NA Intergenic Intergenic 705224 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 128-35 chr16 60612901 60613221 + 0.833333 NA Intergenic Intergenic -253268 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 222.167-16 chr16 8360459 8360819 + 0.833333 NA Intergenic Intergenic 229199 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 181.5-2 chr1 97073976 97074329 + 0.833333 NA Intergenic Intergenic -21771 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 310.333-4 chr2 182974637 182975373 + 0.833333 NA intron (NM_013436, intron 15 of 30) intron (NM_013436, intron 15 of 30) 63452 NM_013436 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 147.167-3 chr1 113813524 113813855 + 0.833333 NA TTS (NM_001193431) TTS (NM_001193431) 1077 NR_125965 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 289.167-4 chr10 15521287 15521830 + 0.833333 NA intron (NM_001291494, intron 27 of 28) intron (NM_001291494, intron 27 of 28) -150269 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 115.833-43 chr3 44271265 44271575 + 0.833333 NA intron (NM_001145030, intron 8 of 19) L1ME3A|LINE|L1 29534 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 291.333-8 chr4 41328998 41329570 + 0.833333 NA Intergenic Intergenic -30323 NM_001289124 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 293.333-18 chr8 136547423 136548149 + 0.833333 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 16988 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 120-45 chr18 9493458 9493671 + 0.833333 NA intron (NM_006788, intron 1 of 9) L1MC5|LINE|L1 18051 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 154.5 chr1 48186372 48186568 + 0.833333 NA Intergenic MER50|LTR|ERV1 -4042 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 155.833-45 chr4 24532564 24532834 + 0.833333 NA intron (NM_001358, intron 12 of 13) intron (NM_001358, intron 12 of 13) -12409 NR_030299 693158 NR_030299 ENSG00000207697 MIR573 MIRN573|hsa-mir-573|mir-573 microRNA 573 ncRNA 176.5-3 chr1 238591113 238591506 + 0.833333 NA Intergenic Intergenic -105292 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 132.167-60 chr6 93883204 93883538 + 0.833333 NA Intergenic MER3|DNA|hAT-Charlie 165068 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 248.167-10 chr13 107948281 107948810 + 0.833333 NA Intergenic L1M1|LINE|L1 -81049 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 132.333-72 chr3 178893579 178893936 + 0.833333 NA Intergenic L1ME1|LINE|L1 -33352 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 145.5-83 chr8 99320234 99320478 + 0.833333 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 216374 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 226.167-21 chr5 26918690 26919138 + 0.833333 NA intron (NM_016279, intron 2 of 11) MLT2B1|LTR|ERVL 119672 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 183.5-22 chr17 39781443 39781680 + 0.833333 NA intron (NM_001284514, intron 6 of 8) intron (NM_001284514, intron 6 of 8) -3336 NM_001284516 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 157.333-38 chr2 66520936 66521208 + 0.833333 NA intron (NM_002398, intron 8 of 12) intron (NM_002398, intron 8 of 12) -52958 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 123.667-107 chr8 64516096 64516305 + 0.833333 NA Intergenic Intergenic 61063 NR_015374 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 172.833-29 chr22 27281560 27282000 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR -28871 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 214.167-9 chr17 65297523 65298153 + 0.833333 NA Intergenic Intergenic -159703 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 150-71 chr6 75709818 75710131 + 0.833333 NA intron (NM_001100409, intron 19 of 22) intron (NM_001100409, intron 19 of 22) -39265 NM_001368138 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 130.667-5 chr1 171971326 171971607 + 0.833333 NA intron (NM_001278252, intron 2 of 14) intron (NM_001278252, intron 2 of 14) 107274 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 181-23 chr14 41685308 41685545 + 0.833333 NA intron (NM_001346173, intron 1 of 4) L1MA3|LINE|L1 78570 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 116.333-8 chr1 114955233 114955448 + 0.833333 NA intron (NM_001282541, intron 27 of 31) L1MD1|LINE|L1 -74484 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 262.167-20 chr5 56856736 56857372 + 0.833333 NA intron (NM_005921, intron 2 of 19) intron (NM_005921, intron 2 of 19) 41505 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 124.667-44 chr16 7473524 7473795 + 0.833333 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 140814 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 140.5-80 chr8 122242850 122243104 + 0.833333 NA Intergenic Intergenic 325667 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 117.5-25 chr2 57632453 57632743 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -275053 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 157.333-29 chr17 61017760 61018031 + 0.833333 NA intron (NM_001320470, intron 16 of 25) intron (NM_001320470, intron 16 of 25) 340044 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 258.333-30 chr5 146415690 146416119 + 0.833333 NA Intergenic Zaphod|DNA|hAT-Tip100 -31429 NM_006706 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 199.167-46 chr8 89772610 89772878 + 0.833333 NA exon (NM_003821, exon 6 of 11) exon (NM_003821, exon 6 of 11) 14928 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 229.833-3 chr1 163476971 163477545 + 0.833333 NA Intergenic Intergenic -54067 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 137.333-65 chr3 142411175 142411452 + 0.833333 NA intron (NM_019001, intron 15 of 41) L1MC|LINE|L1 36724 NM_019001 54464 Hs.435103 NM_019001 ENSG00000114127 XRN1 SEP1 5'-3' exoribonuclease 1 protein-coding 179.833-32 chr8 102163932 102164265 + 0.833333 NA Intergenic L1ME4c|LINE|L1 38666 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 121.667-74 chr4 87468584 87468810 + 0.833333 NA Intergenic MER104|DNA|TcMar-Tc2 46100 NM_198038 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 153.333-40 chr2 167022046 167022391 + 0.833333 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 118737 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 189.833-8 chr14 59560656 59560975 + 0.833333 NA intron (NM_001164399, intron 7 of 19) intron (NM_001164399, intron 7 of 19) 15997 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 305.167-3 chr14 22196137 22196684 + 0.833333 NA Intergenic L1MB8|LINE|L1 236343 NR_148363 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 146.333-33 chr15 75343233 75343515 + 0.833333 NA TTS (NR_104312) TTS (NR_104312) -3616 NM_001352519 79661 Hs.512732 NM_024608 ENSG00000140398 NEIL1 FPG1|NEI1|hFPG1 nei like DNA glycosylase 1 protein-coding 129.5-24 chr14 65958130 65958316 + 0.833333 NA Intergenic L2c|LINE|L2 487121 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 193.167-4 chr1 169749873 169750145 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -15930 NM_000450 6401 Hs.82848 NM_000450 ENSG00000007908 SELE CD62E|ELAM|ELAM1|ESEL|LECAM2 selectin E protein-coding 119-42 chr17 52665139 52665348 + 0.833333 NA Intergenic L1M3b|LINE|L1 -196878 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 174.5-56 chr8 133647433 133647763 + 0.833333 NA Intergenic MIRb|SINE|MIR 36468 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 303.667-3 chr11 115559992 115560648 + 0.833333 NA Intergenic MIRb|SINE|MIR -55905 NM_001301043 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 129.5-38 chr18 76996020 76996229 + 0.833333 NA intron (NM_001025090, intron 1 of 5) L1ME1|LINE|L1 20931 NM_002385 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 243.833-2 chr1 178669757 178670297 + 0.833333 NA Intergenic Intergenic -7722 NR_039622 100616328 NR_039622 ENSG00000266417 MIR4424 - microRNA 4424 ncRNA 196-54 chr5 72481236 72481550 + 0.833333 NA intron (NM_152625, intron 1 of 4) L1ME4a|LINE|L1 26017 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 128.667-11 chr1 210518187 210518430 + 0.833333 NA intron (NM_001122834, intron 9 of 11) L1MA6|LINE|L1 188942 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 145.667-96 chr7 96607293 96607555 + 0.833333 NA intron (NR_163950, intron 3 of 6) intron (NR_163950, intron 3 of 6) 56914 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 267.667-21 chr8 104659945 104660546 + 0.833333 NA Intergenic Intergenic -71221 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 139.167-26 chr15 98872799 98872991 + 0.833333 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 88469 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 194.667-56 chr6 23915654 23915955 + 0.833333 NA Intergenic AluSz|SINE|Alu -210411 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 165.5-48 chr5 120887330 120887903 + 0.833333 NA Intergenic LTR2752|LTR|ERV1 356152 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 138-116 chr9 108250041 108250246 + 0.833333 NA Intergenic Intergenic 605843 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 186.833-38 chr6 142639393 142639617 + 0.833333 NA Intergenic Intergenic -1616 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 129.167-44 chr2 224914368 224914610 + 0.833333 NA intron (NM_001290263, intron 3 of 55) intron (NM_001290263, intron 3 of 55) 32560 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 140-79 chr8 87578048 87578358 + 0.833333 NA Intergenic Intergenic 295812 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 154-18 chr13 30975577 30975802 + 0.833333 NA TTS (NM_001353390) TTS (NM_001353390) 43033 NR_148425 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 114.5-15 chr11 4651859 4652031 + 0.833333 NA intron (NM_152430, intron 1 of 1) intron (NM_152430, intron 1 of 1) 7963 NM_152430 143503 Hs.470038 NM_152430 ENSG00000180785 OR51E1 D-GPCR|DGPCR|GPR136|GPR164|OR51E1P|OR52A3P|POGR|PSGR2 olfactory receptor family 51 subfamily E member 1 protein-coding 257-11 chr3 181593911 181594364 + 0.833333 NA intron (NR_075091, intron 4 of 7) L1ME4a|LINE|L1 -16197 NR_004053 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 218.5 chr1 50134976 50135397 + 0.833333 NA intron (NM_001324217, intron 1 of 3) intron (NM_001324217, intron 1 of 3) 25353 NR_136725 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 174.667-18 chr14 50695061 50695339 + 0.833333 NA Intergenic THE1B-int|LTR|ERVL-MaLR -26894 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 354.667-3 chr6 132661790 132662447 + 0.833333 NA Intergenic L2c|LINE|L2 -16092 NM_138327 134864 Hs.375030 NM_138327 ENSG00000146399 TAAR1 TA1|TAR1|TRAR1 trace amine associated receptor 1 protein-coding 227.333-41 chr7 52819376 52819689 + 0.833333 NA Intergenic L1MA9|LINE|L1 -216101 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 160.667-58 chr3 185308544 185308895 + 0.833333 NA intron (NM_001242317, intron 2 of 12) L1M3d|LINE|L1 25758 NM_001242317 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 119-9 chr1 188829867 188830046 + 0.833333 NA Intergenic AluJr|SINE|Alu 1386328 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 121.167-57 chr3 138417405 138417658 + 0.833333 NA Intergenic MIR|SINE|MIR -17042 NR_136409 83850 Hs.477711 NM_031913 ENSG00000158220 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin 3 protein-coding 286.167-5 chr17 77790331 77790875 + 0.833333 NA Intergenic Intergenic -62044 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 130-43 chr16 76706114 76706291 + 0.833333 NA Intergenic Intergenic 71204 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 167.833-32 chr21 16538978 16539475 + 0.833333 NA promoter-TSS (NR_029480) promoter-TSS (NR_029480) 137 NR_029514 407055 NR_029514 ENSG00000207638 MIR99A MIRN99A|mir-99a microRNA 99a ncRNA 278.167-14 chrX 78927490 78927893 + 0.833333 NA Intergenic L1MA9|LINE|L1 -17641 NM_198333 27334 Hs.296433 NM_014499 ENSG00000078589 P2RY10 LYPSR2|P2Y10 P2Y receptor family member 10 protein-coding 174.333-13 chr12 38791370 38791666 + 0.833333 NA intron (NM_153634, intron 6 of 19) intron (NM_153634, intron 6 of 19) 114073 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 212-34 chr7 43794882 43795563 + 0.833333 NA intron (NM_001253823, intron 6 of 8) AluSx|SINE|Alu 36542 NM_000712 644 Hs.488143 NM_000712 ENSG00000106605 BLVRA BLVR|BVR|BVRA biliverdin reductase A protein-coding 180-51 chr7 3367334 3367639 + 0.833333 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 66234 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 134.5-74 chr8 119053352 119053665 + 0.833333 NA intron (NM_001324095, intron 3 of 7) intron (NM_001324095, intron 3 of 7) -13739 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 136.667-39 chr2 48512736 48513047 + 0.833333 NA intron (NR_024188, intron 21 of 21) intron (NR_024188, intron 21 of 21) -17034 NM_001198593 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 128.667-39 chr14 53477450 53477774 + 0.833333 NA Intergenic Intergenic 324258 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 208.833-20 chr2 62871549 62871949 + 0.833333 NA intron (NM_001142615, intron 9 of 22) intron (NM_001142615, intron 9 of 22) 164852 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 202 chr1 113990747 113991062 + 0.833333 NA Intergenic Intergenic 11430 NM_001286352 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 141-37 chr19 34048416 34048970 + 0.833333 NA Intergenic Intergenic -123811 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 206.833-3 chr16 13257876 13258487 + 0.833333 NA Intergenic Intergenic 356583 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 175.667-33 chr2 138564063 138564353 + 0.833333 NA intron (NM_001001664, intron 8 of 10) L1ME1|LINE|L1 62438 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 166.5-41 chr4 33645987 33646229 + 0.833333 NA Intergenic Intergenic 393785 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 266.334-7 chrX 97253465 97254063 + 0.833333 NA intron (NM_007309, intron 23 of 26) AluSx3|SINE|Alu 310771 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 207-24 chr2 83601621 83601881 + 0.833333 NA Intergenic AluY|SINE|Alu 78937 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 286.667-19 chr9 36291247 36291623 + 0.833333 NA Intergenic Intergenic -14379 NM_001190388 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 186-45 chr5 126912407 126912707 + 0.833333 NA intron (NM_178450, intron 3 of 4) intron (NM_178450, intron 3 of 4) 118001 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 149.5-17 chr12 5490457 5490727 + 0.833333 NA intron (NM_001102654, intron 1 of 1) intron (NM_001102654, intron 1 of 1) -3540 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 120-102 chr7 128308113 128308292 + 0.833333 NA 3' UTR (NM_001166135, exon 15 of 15) 3' UTR (NM_001166135, exon 15 of 15) 35706 NM_018077 55131 Hs.274263 NM_018077 ENSG00000106344 RBM28 ANES RNA binding motif protein 28 protein-coding 281-23 chr8 136067977 136068391 + 0.833333 NA Intergenic Intergenic -462614 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 206.167-8 chr2 23207031 23207385 + 0.833333 NA Intergenic L2a|LINE|L2 -177971 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 192.667-12 chr11 48583161 48583477 + 0.833333 NA Intergenic L1M5|LINE|L1 94526 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 157.5-41 chr3 105482513 105482714 + 0.833333 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 115704 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 201.5-32 chr6 88340532 88340822 + 0.833333 NA Intergenic Intergenic -173328 NM_001370546 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 187.167-21 chr2 153115334 153115659 + 0.833333 NA Intergenic Intergenic 363266 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 176.333-31 chr16 73861919 73862346 + 0.833333 NA Intergenic Intergenic 353389 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 137.167-71 chr8 126434078 126434322 + 0.833333 NA Intergenic LTR8B|LTR|ERV1 108705 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 518.667 chr13 86201824 86202731 + 0.833333 NA Intergenic Intergenic -402858 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 165.5-45 chr5 89809020 89809407 + 0.833333 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR 207507 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 229.167-5 chr10 116334451 116334845 + 0.833333 NA intron (NM_198515, intron 3 of 8) L1ME4a|LINE|L1 10200 NM_198515 374355 Hs.233407 NM_198515 ENSG00000182645 CCDC172 C10orf96 coiled-coil domain containing 172 protein-coding 173.5-48 chr6 99415511 99415914 + 0.833333 NA 5' UTR (NM_001322406, exon 3 of 13) 5' UTR (NM_001322406, exon 3 of 13) -9159 NR_125843 101927365 Hs.535847 NR_125843 LOC101927365 - uncharacterized LOC101927365 ncRNA 150.5 chr1 37879795 37880007 + 0.833333 NA intron (NR_158628, intron 16 of 24) intron (NR_158628, intron 16 of 24) -20309 NM_005955 4520 Hs.471991 NM_005955 ENSG00000188786 MTF1 MTF-1|ZRF metal regulatory transcription factor 1 protein-coding 135.5-62 chr5 72112164 72112374 + 0.833333 NA intron (NM_005909, intron 1 of 6) intron (NM_005909, intron 1 of 6) 4794 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 277.333-5 chr15 48625776 48626134 + 0.833333 NA intron (NM_000138, intron 2 of 65) intron (NM_000138, intron 2 of 65) 19833 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 201.5-17 chr2 59612949 59613353 + 0.833333 NA Intergenic L1MB7|LINE|L1 395443 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 312.5-9 chr6 123529748 123530245 + 0.833333 NA intron (NM_001256022, intron 5 of 5) intron (NM_001256022, intron 5 of 5) 90392 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 194.5-32 chr4 181404320 181404700 + 0.833333 NA Intergenic THE1D-int|LTR|ERVL-MaLR -139481 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 184.167-26 chr2 22528191 22528545 + 0.833333 NA Intergenic L1MEd|LINE|L1 -8111 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 144.5-8 chr10 5517060 5517284 + 0.833333 NA non-coding (NR_120497, exon 3 of 3) non-coding (NR_120497, exon 3 of 3) -7789 NM_005185 810 Hs.239600 NM_005185 ENSG00000178363 CALML3 CLP calmodulin like 3 protein-coding 173-56 chr8 53399211 53399551 + 0.833333 NA Intergenic Intergenic 124584 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 204.333-12 chr11 43454085 43454372 + 0.833333 NA intron (NM_018259, intron 21 of 23) L1M8|LINE|L1 95308 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 196.5-20 chr2 105915296 105915608 + 0.833333 NA Intergenic Intergenic 63605 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 116.667-93 chr6 53058828 53059175 + 0.833333 NA intron (NM_014920, intron 1 of 13) intron (NM_014920, intron 1 of 13) 2801 NM_016513 22858 Hs.417022 NM_014920 ENSG00000112144 ICK ECO|EJM10|LCK2|MRK intestinal cell kinase protein-coding 202.333-28 chr22 37186093 37186718 + 0.833333 NA intron (NM_001365878, intron 3 of 4) intron (NM_001365878, intron 3 of 4) 1842 NM_031910 114904 Hs.22011 NM_031910 ENSG00000133466 C1QTNF6 CTFP6|CTRP6|ZACRP6 C1q and TNF related 6 protein-coding 159.667-55 chr20 52484446 52484735 + 0.833333 NA Intergenic Intergenic -136248 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 256.333-9 chr12 98168911 98169339 + 0.833333 NA Intergenic Intergenic -173677 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 127.667-92 chr7 130170608 130170921 + 0.833333 NA intron (NR_156699, intron 13 of 14) L2c|LINE|L2 29033 NR_149034 100128325 Hs.105944 NR_149033 ENSG00000229196 LOC100128325 - uncharacterized LOC100128325 ncRNA 191.833-2 chr1 114982850 114983293 + 0.833333 NA intron (NM_001282542, intron 28 of 30) L1M4|LINE|L1 -46753 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 257.167-7 chr2 193488998 193489714 + 0.833333 NA Intergenic Intergenic 739511 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 128.667-107 chr7 146130924 146131087 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR -643266 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 169.5-68 chr7 93517647 93518018 + 0.833333 NA intron (NM_001164737, intron 2 of 15) L1MC5a|LINE|L1 -33813 NR_030164 574442 NR_030164 ENSG00000207656 MIR489 MIRN489|hsa-mir-489|mir-489 microRNA 489 ncRNA 143-16 chr12 26642340 26642579 + 0.833333 NA intron (NM_002223, intron 21 of 56) MSTD|LTR|ERVL-MaLR 190735 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 155.833-36 chr20 52716289 52716592 + 0.833333 NA Intergenic Intergenic 95602 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 138-111 chr8 136490514 136490851 + 0.833333 NA Intergenic L2|LINE|L2 -40116 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 205.333-31 chr20 11661210 11661635 + 0.833333 NA Intergenic L1PA12|LINE|L1 209293 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 133.333-11 chr10 31927573 31927824 + 0.833333 NA intron (NM_001270696, intron 1 of 17) intron (NM_001270696, intron 1 of 17) 1133 NM_001270696 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 207.833-2 chr1 72158672 72159115 + 0.833333 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 123646 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 119.833-86 chr8 121741485 121741648 + 0.833333 NA Intergenic Intergenic -100126 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 212.167-18 chr4 76594682 76595111 + 0.833333 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 19345 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 168.667-34 chr2 81169671 81169982 + 0.833333 NA Intergenic Intergenic 297120 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 229.167-30 chr6 43782121 43782615 + 0.833333 NA intron (NM_001033756, intron 6 of 6) intron (NM_001033756, intron 6 of 6) 10400 NM_001287044 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 142.833-54 chr4 133659429 133659937 + 0.833333 NA Intergenic Intergenic 510389 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 173.333-24 chr14 76767481 76767721 + 0.833333 NA intron (NM_014909, intron 1 of 6) intron (NM_014909, intron 1 of 6) 6133 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 269.333 chr10 105313104 105313683 + 0.833333 NA Intergenic Intergenic 506940 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 313.5-4 chr16 55978591 55979062 + 0.833333 NA Intergenic Intergenic -22795 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 284.834-2 chr18 9149033 9149779 + 0.833333 NA intron (NM_001204056, intron 1 of 11) intron (NM_001204056, intron 1 of 11) 11843 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 189-8 chr17 19613454 19613751 + 0.833333 NA Intergenic L1M6B|LINE|L1 -34548 NM_001369138 224 Hs.499886 NM_000382 ENSG00000072210 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family member A2 protein-coding 123.167-9 chr10 42400721 42400944 + 0.833333 NA Intergenic Intergenic -32787 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 125.833 chr1 23749451 23749681 + 0.833333 NA intron (NM_003198, intron 2 of 10) MIRb|SINE|MIR 6200 NM_003198 6924 Hs.15535 NM_003198 ENSG00000011007 ELOA SIII|SIII p110|TCEB3|TCEB3A elongin A protein-coding 194-14 chr12 77857583 77857921 + 0.833333 NA intron (NM_001024383, intron 1 of 39) intron (NM_001024383, intron 1 of 39) 26858 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 150.333-27 chr12 9595110 9595457 + 0.833333 NA exon (NM_002258, exon 6 of 6) exon (NM_002258, exon 6 of 6) 12633 NM_002258 3820 Hs.169824 NM_002258 ENSG00000111796 KLRB1 CD161|CLEC5B|NKR|NKR-P1|NKR-P1A|NKRP1A|hNKR-P1A killer cell lectin like receptor B1 protein-coding 288-16 chr8 109425879 109426357 + 0.833333 NA intron (NM_177531, intron 24 of 77) intron (NM_177531, intron 24 of 77) 63657 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 185-22 chr18 27036524 27037027 + 0.833333 NA intron (NM_001256316, intron 3 of 4) intron (NM_001256316, intron 3 of 4) 148533 NM_001256316 83539 Hs.44584 NM_031422 ENSG00000154080 CHST9 GALNAC4ST-2|GalNAc4ST2 carbohydrate sulfotransferase 9 protein-coding 196.333-45 chr6 62857124 62857439 + 0.833333 NA Intergenic SATR1|Satellite|Satellite 462696 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 148.5-56 chr4 144711931 144712179 + 0.833333 NA exon (NM_022475, exon 8 of 13) exon (NM_022475, exon 8 of 13) 65899 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 174.5-10 chr13 113887575 113887795 + 0.833333 NA Intergenic L1MC2|LINE|L1 -4199 NR_047035 100874178 Hs.547957 NR_047035 ENSG00000226921 LINC00454 - long intergenic non-protein coding RNA 454 ncRNA 297.333-4 chr14 53405900 53406277 + 0.833333 NA Intergenic L1ME1|LINE|L1 252734 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 137.333-28 chr14 73845753 73845958 + 0.833333 NA Intergenic L1M4|LINE|L1 -5976 NM_001371327 188.5-10 chr10 76097370 76097694 + 0.833333 NA intron (NM_001305581, intron 5 of 6) L1MCc|LINE|L1 314771 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 218-22 chr18 56732875 56733291 + 0.833333 NA intron (NM_015285, intron 14 of 27) intron (NM_015285, intron 14 of 27) 81698 NM_015285 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 171.5-16 chr14 33271593 33272009 + 0.833333 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) 332922 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 203.5-13 chr14 51937049 51937533 + 0.833333 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) -18720 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 137-50 chr19 46066738 46066920 + 0.833333 NA intron (NR_163177, intron 1 of 5) MSTB|LTR|ERVL-MaLR 10800 NR_163175 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 158.5-88 chr9 34845338 34845537 + 0.833333 NA Intergenic L1ME1|LINE|L1 -6851 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 182.333-56 chr5 173931620 173931869 + 0.833333 NA intron (NM_001308193, intron 2 of 7) intron (NM_001308193, intron 2 of 7) 38693 NM_001308193 80315 Hs.127126 NM_030627 ENSG00000113742 CPEB4 CPE-BP4|hCPEB-4 cytoplasmic polyadenylation element binding protein 4 protein-coding 168.5-42 chr4 89343225 89343497 + 0.833333 NA Intergenic L1M3f|LINE|L1 -35561 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 149-60 chr4 35022424 35022828 + 0.833333 NA Intergenic Intergenic -752879 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 208.5-7 chr1 172771113 172771389 + 0.833333 NA Intergenic L2|LINE|L2 112148 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 194-41 chr4 41691893 41692226 + 0.833333 NA intron (NM_001330786, intron 21 of 22) MIR|SINE|MIR 56911 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 234-3 chr1 97810418 97810813 + 0.833333 NA intron (NM_000110, intron 3 of 22) L2a|LINE|L2 13694 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 196.333-32 chr4 30433237 30433631 + 0.833333 NA Intergenic Intergenic -286935 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 206-5 chr12 95294436 95294808 + 0.833333 NA intron (NR_147922, intron 11 of 12) L1ME3|LINE|L1 -13798 NR_029895 442903 NR_029895 ENSG00000199172 MIR331 MIRN331|hsa-mir-331|mir-331 microRNA 331 ncRNA 205-38 chr6 160823177 160823591 + 0.833333 NA Intergenic Intergenic 121191 NM_000301 5340 Hs.143436 NM_000301 ENSG00000122194 PLG - plasminogen protein-coding 115.333-91 chr6 22223413 22223620 + 0.833333 NA Intergenic Intergenic 73520 NM_000948 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 114.833-60 chr6 63981165 63981557 + 0.833333 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 174525 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 119.833-29 chr14 51548941 51549155 + 0.833333 NA intron (NR_047477, intron 2 of 3) intron (NR_047477, intron 2 of 3) 50904 NR_047477 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 149.833-46 chr6 133970525 133970849 + 0.833333 NA intron (NM_004865, intron 1 of 6) AluJr|SINE|Alu 17463 NM_004865 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 228.333-33 chr6 73495575 73496022 + 0.833333 NA intron (NM_133645, intron 11 of 12) intron (NM_133645, intron 11 of 12) 22640 NR_132981 106635684 NR_132981 SNORD141B - small nucleolar RNA, C/D box 141B snoRNA 133.833-44 chr20 40675546 40675754 + 0.833333 NA Intergenic Intergenic 13586 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 170-46 chr3 17623586 17623829 + 0.833333 NA intron (NM_001349084, intron 2 of 22) intron (NM_001349084, intron 2 of 22) 76313 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 170.333-68 chr7 83201597 83201964 + 0.833333 NA Intergenic LTR16B1|LTR|ERVL -38896 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 220.333 chr1 208286687 208287185 + 0.833333 NA Intergenic Intergenic -42552 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 173.5-50 chr6 128824498 128824945 + 0.833333 NA Intergenic Intergenic -58417 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 118.333-48 chr2 25804094 25804306 + 0.833333 NA intron (NM_001369346, intron 2 of 10) intron (NM_001369346, intron 2 of 10) -9509 NM_001369347 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 188.167-14 chr18 8789991 8790253 + 0.833333 NA intron (NM_015210, intron 7 of 16) intron (NM_015210, intron 7 of 16) 72741 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 214-42 chr6 52167471 52167917 + 0.833333 NA Intergenic L1PA16|LINE|L1 -16671 NR_131248 101154644 Hs.582788 NR_131248 LINCMD1 LINC-MD1|MIR133BHG long intergenic non-protein coding RNA, muscle differentiation 1 ncRNA 143.667-94 chr7 9575342 9575567 + 0.833333 NA Intergenic Intergenic -58816 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 164.833-47 chr8 26344374 26344686 + 0.833333 NA intron (NM_001177591, intron 3 of 9) intron (NM_001177591, intron 3 of 9) 38423 NR_144550 157489 Hs.586388 NR_144550 ENSG00000228451 SDAD1P1 - SDA1 domain containing 1 pseudogene 1 pseudo 303.167-7 chr5 129359196 129359766 + 0.833333 NA Intergenic Intergenic 37666 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 157.333-41 chr2 204282145 204282344 + 0.833333 NA Intergenic LTR33|LTR|ERVL -263231 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 163.167-44 chr7 84692449 84692816 + 0.833333 NA Intergenic Intergenic 160156 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 250.833-8 chr2 153539933 153540320 + 0.833333 NA Intergenic THE1C-int|LTR|ERVL-MaLR -61364 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 222.833-19 chr7 4568661 4569147 + 0.833333 NA Intergenic AluJr4|SINE|Alu -113391 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 154.5-38 chr2 138803434 138803773 + 0.833333 NA Intergenic LTR103_Mam|LTR|ERV1? -23213 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 164-67 chr7 19030099 19030479 + 0.833333 NA Intergenic Intergenic 87347 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 254-34 chrX 77826158 77826826 + 0.833333 NA 3' UTR (NM_001367916, exon 10 of 10) 3' UTR (NM_001367916, exon 10 of 10) -40276 NM_000489 546 Hs.533526 NM_000489 ENSG00000085224 ATRX JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX ATRX chromatin remodeler protein-coding 286.167-14 chr8 73029509 73029977 + 0.833333 NA intron (NM_003218, intron 6 of 8) intron (NM_003218, intron 6 of 8) 20879 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 152.167-15 chr12 44188613 44188818 + 0.833333 NA intron (NM_001286213, intron 3 of 6) L2a|LINE|L2 352634 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 136.833-19 chr14 30138776 30139008 + 0.833333 NA Intergenic Intergenic -211045 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 327-7 chr6 136420863 136421471 + 0.833333 NA intron (NM_001198611, intron 2 of 16) intron (NM_001198611, intron 2 of 16) 45708 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 229.833-8 chr2 14934231 14934534 + 0.833333 NA Intergenic HAL1ME|LINE|L1 301665 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 242-9 chr18 41191979 41192606 + 0.833333 NA Intergenic L1M4|LINE|L1 328385 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 151.167-14 chr12 42931098 42931351 + 0.833333 NA Intergenic Intergenic -224091 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 271.167-13 chr5 27476336 27476829 + 0.833333 NA intron (NR_038848, intron 2 of 4) MER61-int|LTR|ERV1 4290 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 219.5-11 chr15 54086109 54086531 + 0.833333 NA intron (NM_001329919, intron 2 of 31) intron (NM_001329919, intron 2 of 31) 73672 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 311.333-11 chr6 149298709 149299226 + 0.833333 NA intron (NM_001292035, intron 2 of 6) intron (NM_001292035, intron 2 of 6) -18745 NM_001369506 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 196.333-41 chr5 108811358 108811643 + 0.833333 NA intron (NM_001308028, intron 3 of 17) L1MEc|LINE|L1 62552 NR_146155 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 253.833-12 chr4 68151235 68151630 + 0.833333 NA Intergenic Intergenic -21563 NM_207407 389208 Hs.677557 NM_207407 ENSG00000198092 TMPRSS11F - transmembrane serine protease 11F protein-coding 140.667-81 chr7 97301054 97301259 + 0.833333 NA Intergenic Intergenic 184563 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 263.667-11 chr2 222427648 222428201 + 0.833333 NA intron (NM_152386, intron 1 of 4) MIR3|SINE|MIR 3381 NM_152386 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 131.5-46 chr20 59475119 59475336 + 0.833333 NA Intergenic Intergenic -102282 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 138.5-56 chr4 46767369 46767592 + 0.833333 NA intron (NM_130902, intron 2 of 2) L1MA9|LINE|L1 141765 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 205.667-42 chr3 110309916 110310394 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie 707327 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 179-10 chr13 46052834 46053195 + 0.833333 NA promoter-TSS (NM_015070) promoter-TSS (NM_015070) 166 NR_046226 100509894 Hs.626139 NR_046226 ENSG00000235903 CPB2-AS1 - CPB2 antisense RNA 1 ncRNA 229-47 chr8 105147938 105148244 + 0.833333 NA Intergenic L1MA8|LINE|L1 -170347 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 117.833-64 chr5 59658879 59659178 + 0.833333 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 44675 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 167.333-7 chr10 16040449 16040798 + 0.833333 NA Intergenic Intergenic -180090 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 190.833-30 chr4 57406612 57406882 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR -19125 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 240-33 chr9 87900196 87900587 + 0.833333 NA intron (NR_149022, intron 3 of 3) L1M4c|LINE|L1 17514 NM_178828 286234 Hs.130672 NM_178828 ENSG00000177992 SPATA31E1 C9orf79|FAM75E1 SPATA31 subfamily E member 1 protein-coding 149.667-23 chr14 67060597 67060889 + 0.833333 NA intron (NM_001024218, intron 10 of 21) intron (NM_001024218, intron 10 of 21) -128697 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 141.667-88 chr5 37903358 37903691 + 0.833333 NA Intergenic L2a|LINE|L2 -44967 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 207.667-3 chr11 37893818 37894191 + 0.833333 NA Intergenic Intergenic -44597 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 144.167-81 chr9 35261324 35261631 + 0.833333 NA intron (NM_006377, intron 7 of 38) L1MC4|LINE|L1 -80419 NM_001371188 141.167-81 chr9 135348075 135348619 + 0.833333 NA Intergenic Intergenic 5098 NM_173520 157927 Hs.559511 NM_173520 C9orf62 - chromosome 9 open reading frame 62 protein-coding 133.833-54 chr4 45821019 45821313 + 0.833333 NA Intergenic Kanga1c|DNA|TcMar-Tc2 302888 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 188.833-5 chr10 60692262 60692635 + 0.833333 NA intron (NM_001204403, intron 1 of 43) Charlie2a|DNA|hAT-Charlie 41080 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 148.667-35 chr2 78392201 78392580 + 0.833333 NA Intergenic L1MA4|LINE|L1 -101659 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 270.5-6 chr14 63593577 63594291 + 0.833333 NA Intergenic Intergenic 47937 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 130.667-73 chr5 44066815 44066977 + 0.833333 NA Intergenic MIRb|SINE|MIR -321836 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 114.5-7 chr1 208553684 208553882 + 0.833333 NA Intergenic Intergenic -174905 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 273.667-8 chr15 100667603 100668126 + 0.833333 NA Intergenic Intergenic 65275 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 282.667-17 chr7 96210807 96211378 + 0.833333 NA intron (NR_027662, intron 3 of 16) intron (NR_027662, intron 3 of 16) 8664 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 163.333-46 chr2 233568512 233568822 + 0.833333 NA Intergenic Intergenic -1885 NM_001365479 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 155.667-33 chr2 11243308 11243569 + 0.833333 NA intron (NM_001321643, intron 4 of 32) Cheshire|DNA|hAT-Charlie 87971 NM_001282711 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 231.833-5 chr15 44461198 44462087 + 0.833333 NA intron (NM_016396, intron 2 of 12) AluJr|SINE|Alu 34013 NM_016396 51496 Hs.497967 NM_016396 ENSG00000137770 CTDSPL2 HSPC058|HSPC129 CTD small phosphatase like 2 protein-coding 210.833-27 chr6 166365616 166365951 + 0.833333 NA intron (NM_001270879, intron 4 of 4) Tigger4a|DNA|TcMar-Tigger 17157 NM_016098 51660 Hs.172755 NM_016098 ENSG00000060762 MPC1 BRP44L|CGI-129|MPYCD|SLC54A1 mitochondrial pyruvate carrier 1 protein-coding 141.333-89 chr7 28023224 28023494 + 0.833333 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -157098 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 232.167-30 chrX 45380648 45381241 + 0.833333 NA Intergenic Intergenic -124444 NR_104645 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 237.333-42 chr9 31387764 31388331 + 0.833333 NA Intergenic Intergenic -6557 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 180.167-17 chr14 65576861 65577156 + 0.833333 NA intron (NM_178156, intron 2 of 9) AluJo|SINE|Alu 105906 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 159-10 chr10 57467410 57467912 + 0.833333 NA Intergenic Intergenic -163102 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 125.833-67 chr4 174771258 174771518 + 0.833333 NA intron (NM_006529, intron 2 of 9) intron (NM_006529, intron 2 of 9) 57859 NM_006529 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 184.333-26 chr2 53826807 53827196 + 0.833333 NA intron (NM_001164165, intron 1 of 9) intron (NM_001164165, intron 1 of 9) 22204 NR_037453 100500850 NR_037453 ENSG00000265452 MIR3682 mir-3682 microRNA 3682 ncRNA 139.333-4 chr1 216224700 216224925 + 0.833333 NA intron (NM_206933, intron 14 of 71) intron (NM_206933, intron 14 of 71) 152347 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 207-8 chr12 20357787 20358136 + 0.833333 NA Intergenic Intergenic -11284 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 160.167-3 chr1 210222677 210223188 + 0.833333 NA Intergenic Intergenic -9864 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 153.833-9 chr10 31250042 31250255 + 0.833333 NA intron (NR_134478, intron 1 of 2) L1MB3|LINE|L1 62265 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 186.167-18 chr14 30839809 30840140 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -34561 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 221.833 chr1 29941864 29942286 + 0.833333 NA Intergenic Intergenic 95537 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 183.667-15 chr10 53509610 53509912 + 0.833333 NA Intergenic L1PB4|LINE|L1 -738061 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 157.833-42 chr20 18371017 18371265 + 0.833333 NA Intergenic L1PB4|LINE|L1 -7908 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 152.333-47 chr4 67996783 67997186 + 0.833333 NA intron (NR_033737, intron 1 of 3) intron (NR_033737, intron 1 of 3) 455 NR_033737 644759 Hs.646883 NR_033737 ENSG00000229009 TMPRSS11GP - transmembrane serine protease 11G, pseudogene pseudo 156.667-70 chr5 45607132 45607552 + 0.833333 NA intron (NM_021072, intron 2 of 7) L1M5|LINE|L1 89038 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 234.667-15 chr15 93557179 93557702 + 0.833333 NA Intergenic Intergenic -299120 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 133-33 chr15 60476396 60476583 + 0.833333 NA intron (NR_147171, intron 2 of 16) intron (NR_147171, intron 2 of 16) 2653 NM_001018089 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 216.5-26 chr5 150919164 150919686 + 0.833333 NA Intergenic L1MEg|LINE|L1 -14442 NM_001172832 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 140.833-33 chr2 124305789 124306193 + 0.833333 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 280704 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 168.5-37 chr3 169942619 169942889 + 0.833333 NA Intergenic L1MC5|LINE|L1 23980 NR_027622 100128164 Hs.633070 NR_024409 ENSG00000239219 LOC100128164 - four and a half LIM domains 1 pseudogene pseudo 323.333-2 chr10 56475677 56476092 + 0.833333 NA Intergenic L1MC5|LINE|L1 -114611 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 163-46 chr5 7898055 7898440 + 0.833333 NA intron (NR_157177, intron 14 of 14) intron (NR_157177, intron 14 of 14) 29099 NR_157171 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 205.833-7 chr11 94807479 94807937 + 0.833333 NA intron (NM_130847, intron 3 of 12) intron (NM_130847, intron 3 of 12) 39352 NM_001301007 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 213.333-17 chr18 60933814 60934213 + 0.833333 NA Intergenic Intergenic -399417 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 181.667-12 chr14 31935580 31935858 + 0.833333 NA Intergenic L3|LINE|CR1 -9134 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 119.333-29 chr14 71410773 71411111 + 0.833333 NA intron (NM_001354285, intron 2 of 24) intron (NM_001354285, intron 2 of 24) 12605 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 158.5-71 chr6 54082556 54082814 + 0.833333 NA intron (NM_001281746, intron 1 of 11) L1ME4a|LINE|L1 -28758 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 220.167-22 chr4 71823389 71823870 + 0.833333 NA Intergenic Intergenic -18109 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 162-16 chr11 76226561 76226808 + 0.833333 NA Intergenic Intergenic -20182 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 241.833-15 chr5 100830473 100830784 + 0.833333 NA intron (NM_005668, intron 4 of 4) intron (NM_005668, intron 4 of 4) -14063 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 122.5-46 chr2 23072691 23072906 + 0.833333 NA Intergenic Intergenic -312381 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 151-64 chr6 42080595 42080836 + 0.833333 NA 3' UTR (NM_138572, exon 9 of 9) 3' UTR (NM_138572, exon 9 of 9) 30191 NM_138572 129685 Hs.520122 NM_138572 ENSG00000137413 TAF8 II|TAF|TAF(II)43|TAFII-43|TAFII43|TBN TATA-box binding protein associated factor 8 protein-coding 125.167-38 chr2 103735909 103736142 + 0.833333 NA Intergenic L1MA4A|LINE|L1 672307 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 176.833-23 chr3 181872915 181873423 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -79195 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 161.333-59 chr5 60054939 60055281 + 0.833333 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) -161384 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 186.167-3 chr1 52253607 52253913 + 0.833333 NA intron (NM_007324, intron 4 of 17) intron (NM_007324, intron 4 of 17) 111666 NM_004799 9372 Hs.532345 NM_004799 ENSG00000157077 ZFYVE9 MADHIP|NSP|PPP1R173|SARA|SMADIP zinc finger FYVE-type containing 9 protein-coding 165.667-39 chr2 189798329 189798619 + 0.833333 NA intron (NM_001289408, intron 3 of 11) intron (NM_001289408, intron 3 of 11) 14024 NM_001321046 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 327.833 chr1 97270891 97271496 + 0.833333 NA intron (NR_046590, intron 2 of 4) intron (NR_046590, intron 2 of 4) 175270 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 210.167-4 chr1 158252631 158252933 + 0.833333 NA intron (NM_001320652, intron 1 of 5) AluSx|SINE|Alu -1642 NM_001763 909 Hs.1309 NM_001763 ENSG00000158477 CD1A CD1|FCB6|HTA1|R4|T6 CD1a molecule protein-coding 289-10 chr3 120425588 120426127 + 0.833333 NA intron (NM_007085, intron 2 of 10) intron (NM_007085, intron 2 of 10) 25135 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 157-49 chr20 55769726 55770046 + 0.833333 NA Intergenic MER113A|DNA|hAT-Charlie 235633 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 166.833-37 chr6 90582429 90582793 + 0.833333 NA intron (NM_145331, intron 1 of 16) L2a|LINE|L2 4461 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 178.5-40 chr18 73458938 73459291 + 0.833333 NA Intergenic Intergenic 134173 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 129.667-29 chr14 32218104 32218366 + 0.833333 NA Intergenic L1MEi|LINE|L1 -14966 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 123.167-91 chr7 99508211 99508481 + 0.833333 NA intron (NM_145102, intron 2 of 6) L1ME4b|LINE|L1 2341 NM_001318084 23660 Hs.110839 NM_014569 ENSG00000196652 ZKSCAN5 ZFP-95|ZFP95|ZNF914|ZSCAN37 zinc finger with KRAB and SCAN domains 5 protein-coding 191.5-31 chr3 36232801 36233215 + 0.833333 NA Intergenic Intergenic -147479 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 176-15 chr19 28067107 28067426 + 0.833333 NA Intergenic Intergenic -273326 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 159.833-31 chr21 18508328 18508710 + 0.833333 NA Intergenic Intergenic -104734 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 187.167-10 chr14 52164152 52164558 + 0.833333 NA Intergenic Intergenic -95296 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 136.5-43 chr18 55025773 55026009 + 0.833333 NA Intergenic L2b|LINE|L2 -66430 NM_025214 80323 Hs.120790 NM_025214 ENSG00000166510 CCDC68 SE57-1 coiled-coil domain containing 68 protein-coding 134.667-11 chr10 72883382 72883626 + 0.833333 NA intron (NM_138357, intron 6 of 7) L1ME3B|LINE|L1 -10235 NM_152635 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 145.667-77 chr4 125468954 125469234 + 0.833333 NA intron (NM_001291303, intron 11 of 16) intron (NM_001291303, intron 11 of 16) -38165 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 130.167-12 chr11 78190449 78190819 + 0.833333 NA intron (NM_020798, intron 1 of 10) L2b|LINE|L2 1715 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding 262.667-3 chr1 102600168 102600628 + 0.833333 NA Intergenic Intergenic 508098 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 215.333-27 chr2 167911557 167911864 + 0.833333 NA intron (NR_131227, intron 1 of 4) L1MB2|LINE|L1 29434 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 197.667-41 chr3 2028772 2029137 + 0.833333 NA Intergenic Intergenic -69849 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 132-40 chr19 20539126 20539285 + 0.833333 NA 3' UTR (NM_001159293, exon 4 of 4) 3' UTR (NM_001159293, exon 4 of 4) 26576 NM_001159293 100129842 Hs.515696 NM_001159293 ENSG00000237440 ZNF737 ZNF102 zinc finger protein 737 protein-coding 133.833-42 chr2 158609174 158609431 + 0.833333 NA intron (NM_001005476, intron 4 of 20) intron (NM_001005476, intron 4 of 20) 125700 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 157.167-66 chr9 18412480 18412745 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -61541 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 243.5-8 chr14 22913605 22913937 + 0.833333 NA exon (NM_001352764, exon 2 of 15) exon (NM_001352764, exon 2 of 15) 5378 NM_001352764 55147 Hs.4997 NM_018107 ENSG00000100461 RBM23 CAPERbeta|PP239|RNPC4 RNA binding motif protein 23 protein-coding 155.833-29 chr2 85690975 85691187 + 0.833333 NA Intergenic L1M5|LINE|L1 -3277 NM_012483 10578 Hs.105806 NM_006433 ENSG00000115523 GNLY D2S69E|LAG-2|LAG2|NKG5|TLA519 granulysin protein-coding 181.667-28 chr2 114247683 114247946 + 0.833333 NA Intergenic LTR16D|LTR|ERVL -194827 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 186.333-28 chr19 48948946 48949307 + 0.833333 NA Intergenic AluSx|SINE|Alu -5734 NM_001291430 581 Hs.624291 NM_004324 ENSG00000087088 BAX BCL2L4 BCL2 associated X, apoptosis regulator protein-coding 149.167-22 chr15 56330352 56330593 + 0.833333 NA Intergenic L1PA2|LINE|L1 -34952 NM_198524 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 159-17 chr13 98069446 98069773 + 0.833333 NA Intergenic AluSq2|SINE|Alu -72980 NM_001286839 10160 Hs.403917 NM_005766 ENSG00000152767 FARP1 CDEP|FARP1-IT1|PLEKHC2|PPP1R75 FERM, ARH/RhoGEF and pleckstrin domain protein 1 protein-coding 117-72 chr4 17074898 17075102 + 0.833333 NA Intergenic L1ME4b|LINE|L1 111057 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 129.333-88 chr7 36361403 36361644 + 0.833333 NA intron (NM_001100425, intron 2 of 6) intron (NM_001100425, intron 2 of 6) 5717 NM_001300956 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 162.667-25 chr16 80744006 80744362 + 0.833333 NA intron (NM_152342, intron 1 of 6) MIR|SINE|MIR 60414 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 230.167-14 chr3 22970774 22971357 + 0.833333 NA Intergenic Intergenic 231513 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 181-29 chr17 77521310 77521692 + 0.833333 NA Intergenic MLT2B4|LTR|ERVL -5500 NR_148967 400622 Hs.514516 NR_148967 LOC400622 - uncharacterized LOC400622 ncRNA 133.833-79 chr9 68622171 68622351 + 0.833333 NA Intergenic Intergenic -75659 NR_109769 101927015 Hs.406454 NR_109769 ENSG00000234506 LINC01506 - long intergenic non-protein coding RNA 1506 ncRNA 120.667-45 chr15 71683373 71683592 + 0.833333 NA intron (NM_001286429, intron 2 of 11) L2a|LINE|L2 8057 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 143.833-35 chr4 180588085 180588391 + 0.833333 NA Intergenic AluJr|SINE|Alu 570911 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 127-80 chr5 31502482 31502819 + 0.833333 NA intron (NM_013235, intron 10 of 34) ERV3-16A3_I-int|LTR|ERVL 29443 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 138.833-65 chr4 140933449 140933681 + 0.833333 NA intron (NM_020724, intron 4 of 6) Tigger4a|DNA|TcMar-Tigger -177180 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 239.167-15 chr6 66188042 66188597 + 0.833333 NA Intergenic MER1B|DNA|hAT-Charlie 400440 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 137.667-6 chr1 190126731 190126972 + 0.833333 NA intron (NM_199051, intron 7 of 7) intron (NM_199051, intron 7 of 7) 349159 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 121.5-24 chr11 113938490 113938659 + 0.833333 NA intron (NM_006028, intron 6 of 8) L2b|LINE|L2 29733 NM_001363563 9177 Hs.241377 NM_006028 ENSG00000149305 HTR3B 5-HT3B 5-hydroxytryptamine receptor 3B protein-coding 114.667-76 chr3 55961563 55961789 + 0.833333 NA intron (NR_132749, intron 11 of 17) intron (NR_132749, intron 11 of 17) -109082 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 152.167-25 chr2 37917948 37918214 + 0.833333 NA Intergenic Intergenic -7206 NM_001322212 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 136.333-81 chr6 34699243 34699433 + 0.833333 NA Intergenic AluJr|SINE|Alu 2393 NR_134626 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 135.833-58 chr5 68046797 68046996 + 0.833333 NA Intergenic L1PA13|LINE|L1 -142980 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 153.667-53 chr3 178174247 178174516 + 0.833333 NA Intergenic Intergenic -244820 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 126-90 chr7 78419167 78419380 + 0.833333 NA intron (NM_001301128, intron 6 of 20) intron (NM_001301128, intron 6 of 20) 72031 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 169.5-53 chr4 171188981 171189401 + 0.833333 NA Intergenic Intergenic 3007 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 147.667-7 chr1 184526161 184526388 + 0.833333 NA intron (NM_030806, intron 3 of 5) intron (NM_030806, intron 3 of 5) 139245 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 133.333-103 chr6 71590050 71590293 + 0.833333 NA Intergenic Intergenic 169144 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 277.333-6 chr15 101556864 101557313 + 0.833333 NA Intergenic Intergenic 57251 NR_147041 101927505 Hs.578394 NR_147041 LINC02348 - long intergenic non-protein coding RNA 2348 ncRNA 158.167-20 chr18 71512664 71512944 + 0.833333 NA Intergenic Intergenic 66152 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 241.667-40 chr9 1923093 1923522 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR -92040 NM_001289397 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 157.167-46 chr4 55905893 55906202 + 0.833333 NA TTS (NM_018261) TTS (NM_018261) -42898 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 189-48 chr7 120720515 120720858 + 0.833333 NA intron (NM_012281, intron 1 of 5) LTR33A_|LTR|ERVL 137458 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 154.667-29 chr15 89104791 89105034 + 0.833333 NA intron (NM_007011, intron 5 of 14) intron (NM_007011, intron 5 of 14) 16456 NM_007011 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 187.333-18 chr13 66067366 66067857 + 0.833333 NA Intergenic L1ME3B|LINE|L1 -101182 NR_039692 100616302 NR_039692 ENSG00000263581 MIR548X2 - microRNA 548x-2 ncRNA 387.833 chr14 63225960 63226624 + 0.833333 NA intron (NM_020663, intron 1 of 4) L1M7|LINE|L1 21849 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 131.333-6 chr10 23129192 23129450 + 0.833333 NA Intergenic Intergenic 33742 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 144.5-79 chr6 17130173 17130391 + 0.833333 NA intron (NM_001190766, intron 4 of 4) intron (NM_001190766, intron 4 of 4) 28024 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 165.833-39 chr3 67327040 67327589 + 0.833333 NA Intergenic Intergenic 101850 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 165.167-18 chr17 61151028 61151324 + 0.833333 NA intron (NM_001330413, intron 23 of 25) Tigger4a|DNA|TcMar-Tigger 216528 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 171.333-61 chr6 47938350 47938760 + 0.833333 NA intron (NM_207499, intron 2 of 2) L2a|LINE|L2 130134 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 339.833 chr1 152226598 152227318 + 0.833333 NA Intergenic Intergenic -2762 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 262-18 chr5 8484028 8484547 + 0.833333 NA Intergenic MER57A-int|LTR|ERV1 23362 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 190.833-6 chr10 56590110 56590425 + 0.833333 NA Intergenic Intergenic -228994 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 145.5-73 chr8 74817469 74817787 + 0.833333 NA Intergenic Intergenic -6906 NM_015886 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 249.333-9 chr16 66733630 66734099 + 0.833333 NA intron (NM_006141, intron 6 of 12) AluSz|SINE|Alu 17745 NM_006141 1783 Hs.369068 NM_006141 ENSG00000135720 DYNC1LI2 DNCLI2|LIC2 dynein cytoplasmic 1 light intermediate chain 2 protein-coding 203-6 chr12 2898017 2898502 + 0.833333 NA intron (NM_003324, intron 1 of 10) intron (NM_003324, intron 1 of 10) 7368 NM_003324 7289 Hs.655333 NM_003324 ENSG00000078246 TULP3 TUBL3 TUB like protein 3 protein-coding 229.667-31 chr8 85632882 85633258 + 0.833333 NA Intergenic Intergenic 22606 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 157.667-9 chr10 4361584 4361967 + 0.833333 NA Intergenic Intergenic -22471 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 169-54 chr7 25435419 25435692 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -207069 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 229.667-7 chr11 88138121 88138730 + 0.833333 NA intron (NM_022337, intron 2 of 2) HAL1|LINE|L1 37018 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 190.5 chr1 11645511 11645917 + 0.833333 NA Intergenic AluJr|SINE|Alu -8693 NM_001304791 93611 Hs.556006 NM_033182 ENSG00000132879 FBXO44 FBG3|FBX30|FBX6A|Fbx44|Fbxo6a F-box protein 44 protein-coding 164.667-39 chr2 151533516 151533835 + 0.833333 NA intron (NM_001164508, intron 142 of 181) intron (NM_001164508, intron 142 of 181) 123773 NM_001177665 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 130.667-52 chr3 110996912 110997116 + 0.833333 NA Intergenic Intergenic 72945 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 124-25 chr12 84594397 84594670 + 0.833333 NA Intergenic Intergenic 318266 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 182.667-3 chr10 29490130 29490613 + 0.833333 NA intron (NM_001323599, intron 23 of 38) intron (NM_001323599, intron 23 of 38) 54726 NR_030335 693189 NR_030335 ENSG00000207612 MIR604 MIRN604|hsa-mir-604 microRNA 604 ncRNA 170-12 chr12 49547460 49547699 + 0.833333 NA intron (NM_012284, intron 7 of 14) L2b|LINE|L2 8549 NM_001314030 23416 Hs.64064 NM_012284 ENSG00000135519 KCNH3 BEC1|ELK2|Kv12.2 potassium voltage-gated channel subfamily H member 3 protein-coding 131.5-91 chr9 134762762 134762957 + 0.833333 NA intron (NM_001278074, intron 19 of 65) intron (NM_001278074, intron 19 of 65) 86510 NR_039691 100616333 NR_039691 ENSG00000264744 MIR3689C - microRNA 3689c ncRNA 121.833-42 chr22 39744245 39744683 + 0.833333 NA intron (NM_152512, intron 6 of 6) intron (NM_152512, intron 6 of 6) 149296 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 144.167-21 chr13 53273223 53273492 + 0.833333 NA Intergenic Intergenic -121457 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 152.667-30 chr14 70444355 70444538 + 0.833333 NA Intergenic LTR25-int|LTR|ERV1 -7728 NM_003813 8747 Hs.178748 NM_003813 ENSG00000139985 ADAM21 ADAM 21|ADAM31 ADAM metallopeptidase domain 21 protein-coding 127.333-105 chr7 79423982 79424286 + 0.833333 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -28823 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 146.833-18 chr14 83523264 83523639 + 0.833333 NA Intergenic Intergenic 880819 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 262.833-12 chr8 77269427 77270066 + 0.833333 NA Intergenic Intergenic -180951 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 142.333-58 chr2 143416910 143417291 + 0.833333 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 287681 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 172.667-62 chr4 74567254 74567539 + 0.833333 NA Intergenic L1PA8A|LINE|L1 122260 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 184.667-41 chr5 66111944 66112296 + 0.833333 NA Intergenic L1MB2|LINE|L1 -32180 NM_001323534 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 267.167-3 chr11 22005887 22006512 + 0.833333 NA Intergenic MIR|SINE|MIR -186886 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 253.5-20 chr5 145714570 145714968 + 0.833333 NA Intergenic L2a|LINE|L2 120573 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 190.333-60 chr8 122931193 122931497 + 0.833333 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 94427 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 162.667-48 chr22 28002638 28002947 + 0.833333 NA TTS (NR_026963) TTS (NR_026963) -82180 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 344.333 chr14 63468799 63469270 + 0.833333 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 39204 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 144.667-69 chr4 70446362 70446575 + 0.833333 NA intron (NM_001145006, intron 1 of 3) MLT1C|LTR|ERVL-MaLR 15976 NM_001145006 4589 Hs.631946 NM_152291 ENSG00000171195 MUC7 MG2 mucin 7, secreted protein-coding 229.167-27 chr4 111144235 111144625 + 0.833333 NA Intergenic Intergenic -283783 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 168.667-78 chr8 56080408 56080761 + 0.833333 NA Intergenic Intergenic 5992 NR_149110 105375847 NR_149110 ENSG00000253603 CERNA3 CTA competing endogenous lncRNA 3 for miR-645 ncRNA 141.5-73 chr5 75677102 75677391 + 0.833333 NA intron (NM_152408, intron 10 of 10) MIRc|SINE|MIR 35209 NM_152408 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 188-2 chr1 171769990 171770465 + 0.833333 NA Intergenic Intergenic -11433 NM_015935 51603 Hs.494705 NM_014955 ENSG00000010165 EEF1AKNMT 5630401D24Rik|CGI-01|DFNB26|DFNB26M|KIAA0859|METTL13|feat eEF1A lysine and N-terminal methyltransferase protein-coding 201.833-12 chr18 72754639 72754936 + 0.833333 NA intron (NR_148694, intron 8 of 11) L1M4b|LINE|L1 98595 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 181.667-27 chr2 109190894 109191284 + 0.833333 NA intron (NM_001099289, intron 1 of 9) MER58B|DNA|hAT-Charlie -49501 NR_036223 100422863 NR_036223 ENSG00000264934 MIR4265 - microRNA 4265 ncRNA 147.333-77 chr6 166212016 166212473 + 0.833333 NA Intergenic L1MA9|LINE|L1 -24725 NR_125862 101929297 Hs.434661 NR_125862 ENSG00000233365 LOC101929297 - uncharacterized LOC101929297 ncRNA 140.833-48 chr5 55537532 55537932 + 0.833333 NA Intergenic AluSx1|SINE|Alu -2654 NM_176895 8611 Hs.696231 NM_003711 ENSG00000067113 PLPP1 LLP1a|LPP1|PAP-2a|PAP2|PPAP2A phospholipid phosphatase 1 protein-coding 242.5-7 chr16 47278047 47278407 + 0.833333 NA intron (NM_030790, intron 10 of 17) intron (NM_030790, intron 10 of 17) 134159 NR_110903 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 163.167-13 chr15 60211159 60211476 + 0.833333 NA Intergenic AluSx1|SINE|Alu 186669 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 153.667-38 chr2 66334876 66335080 + 0.833333 NA Intergenic Intergenic 23350 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 329-6 chr7 48434754 48435423 + 0.833333 NA intron (NM_152701, intron 42 of 61) L1MB3|LINE|L1 263630 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 167.5-38 chr2 213879658 213879913 + 0.833333 NA intron (NR_047660, intron 10 of 14) L1PA16|LINE|L1 121718 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 140.667-29 chr15 51208883 51209118 + 0.833333 NA 3' UTR (NM_001347256, exon 9 of 9) 3' UTR (NM_001347256, exon 9 of 9) -33190 NR_039863 100616369 NR_039863 ENSG00000266593 MIR4713 - microRNA 4713 ncRNA 152.5-8 chr12 1771921 1772202 + 0.833333 NA intron (NM_024551, intron 2 of 7).2 MIR3|SINE|MIR -48206 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 119.333-73 chr4 98611365 98611527 + 0.833333 NA intron (NM_005723, intron 1 of 7) intron (NM_005723, intron 1 of 7) 47165 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 365.833 chr13 58819286 58820090 + 0.833333 NA Intergenic Intergenic -586571 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 151.833-28 chr2 82266673 82267111 + 0.833333 NA Intergenic MIRb|SINE|MIR -589911 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 170.833-24 chr3 45827570 45827843 + 0.833333 NA intron (NM_020347, intron 8 of 9) intron (NM_020347, intron 8 of 9) 14413 NR_075080 54585 Hs.30824 NM_020347 ENSG00000163818 LZTFL1 BBS17 leucine zipper transcription factor like 1 protein-coding 129.5-5 chr1 101879245 101879426 + 0.833333 NA intron (NR_033424, intron 1 of 1) intron (NR_033424, intron 1 of 1) 7323 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 123.167-15 chr10 124968506 124968712 + 0.833333 NA intron (NM_017580, intron 2 of 8) intron (NM_017580, intron 2 of 8) 26486 NM_017580 54764 Hs.595158 NM_017580 ENSG00000019995 ZRANB1 TRABID zinc finger RANBP2-type containing 1 protein-coding 166.5-60 chr8 49023841 49024139 + 0.833333 NA Intergenic Intergenic -30346 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 152-15 chr11 47460233 47460420 + 0.833333 NA Intergenic AluSp|SINE|Alu -11190 NM_005055 5913 Hs.81218 NM_005055 ENSG00000165917 RAPSN CMS11|CMS4C|FADS|FADS2|RAPSYN|RNF205 receptor associated protein of the synapse protein-coding 196.667-16 chr14 57677343 57678001 + 0.833333 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -183815 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 168.333-55 chr8 90088948 90089233 + 0.833333 NA Intergenic MER5B|DNA|hAT-Charlie -6211 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 216.5-21 chr21 27091613 27092101 + 0.833333 NA Intergenic Intergenic -124769 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 156-37 chr17 60251869 60252204 + 0.833333 NA intron (NM_032582, intron 11 of 33) intron (NM_032582, intron 11 of 33) -20391 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 116.5-28 chr17 73216920 73217132 + 0.833333 NA intron (NM_001098832, intron 2 of 3) intron (NM_001098832, intron 2 of 3) 10691 NM_001289412 84923 Hs.741276 NM_032837 ENSG00000133193 FAM104A - family with sequence similarity 104 member A protein-coding 113.167-57 chr4 87289089 87289369 + 0.833333 NA Intergenic Intergenic 11354 NR_049891 100847027 NR_049891 ENSG00000263981 MIR5705 - microRNA 5705 ncRNA 201-44 chr8 103637735 103638019 + 0.833333 NA intron (NM_001348497, intron 1 of 22) L1MD3|LINE|L1 -135967 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 179.5 chr1 157883161 157883531 + 0.833333 NA Intergenic L2a|LINE|L2 -41538 NM_001347698 922 Hs.134035 NM_005894 ENSG00000073754 CD5L AIM|API6|CT-2|PRO229|SP-ALPHA|Spalpha|hAIM CD5 molecule like protein-coding 220.667-7 chr12 7946635 7946909 + 0.833333 NA Intergenic L2c|LINE|L2 -10585 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 178.333-21 chr19 9941869 9942109 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR -5474 NM_058164 93145 Hs.169743 NM_058164 ENSG00000105088 OLFM2 NOE2|NOELIN2|NOELIN2_V1|OlfC olfactomedin 2 protein-coding 155.5-6 chr10 127018365 127018581 + 0.833333 NA intron (NM_001290223, intron 12 of 51) intron (NM_001290223, intron 12 of 51) 113064 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 199.5-11 chr12 68241329 68241591 + 0.833333 NA Intergenic L2a|LINE|L2 12144 NM_020525 50616 Hs.287369 NM_020525 ENSG00000127318 IL22 IL-21|IL-22|IL-D110|IL-TIF|ILTIF|TIFIL-23|TIFa|zcyto18 interleukin 22 protein-coding 156.5-57 chr3 32079460 32079671 + 0.833333 NA Intergenic AluY|SINE|Alu -26946 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 144.167-38 chr2 153569148 153569470 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -90547 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 264.167-8 chr12 4923420 4923890 + 0.833333 NA Intergenic Intergenic 13750 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 143.5-29 chr17 58219901 58220215 + 0.833333 NA promoter-TSS (NM_001330397) promoter-TSS (NM_001330397) -453 NM_001165927 54903 Hs.408843 NM_017777 ENSG00000011143 MKS1 BBS13|JBTS28|MES|MKS|POC12 MKS transition zone complex subunit 1 protein-coding 142.5-75 chr9 125873690 125874174 + 0.833333 NA intron (NR_024122, intron 2 of 7) L1MEd|LINE|L1 125749 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 174-59 chr8 23745689 23745922 + 0.833333 NA Intergenic Intergenic -39207 NM_001136271 137814 Hs.532654 NM_001136271 ENSG00000180053 NKX2-6 CSX2|CTHM|NKX2F|NKX4-2 NK2 homeobox 6 protein-coding 142.833-42 chr21 29191737 29191989 + 0.833333 NA Intergenic Intergenic -1631 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 144-67 chr7 13841285 13841463 + 0.833333 NA Intergenic Intergenic 145140 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 221.5-3 chr1 185112794 185113234 + 0.833333 NA Intergenic MLT1A|LTR|ERVL-MaLR 43939 NM_030934 81627 Hs.107149 NM_030934 ENSG00000121486 TRMT1L C1orf25|MST070|MSTP070|TRM1L|bG120K12.3 tRNA methyltransferase 1 like protein-coding 132.167-24 chr15 99087913 99088176 + 0.833333 NA Intergenic Intergenic -17036 NM_145728 23336 Hs.207106 NM_015286 ENSG00000182253 SYNM DMN|SYN synemin protein-coding 167.333-29 chr19 42507607 42508007 + 0.833333 NA 3' UTR (NM_001184816, exon 7 of 7) 3' UTR (NM_001184816, exon 7 of 7) 20674 NM_001184815 634 Hs.512682 NM_001712 ENSG00000079385 CEACAM1 BGP|BGP1|BGPI carcinoembryonic antigen related cell adhesion molecule 1 protein-coding 190.167-19 chr15 96363505 96363883 + 0.833333 NA Intergenic Intergenic 29929 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 158.333-70 chr8 79481950 79482177 + 0.833333 NA Intergenic Intergenic -129054 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 156.667 chr1 38180055 38180296 + 0.833333 NA Intergenic Intergenic 34592 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 168.167-46 chr5 77592095 77592482 + 0.833333 NA Intergenic L1ME3|LINE|L1 46409 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 152.667-31 chr14 82141194 82141491 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR -398204 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 187.833-30 chr8 42881617 42881929 + 0.833333 NA intron (NM_001160225, intron 2 of 6) AluJb|SINE|Alu 14502 NR_039679 100616115 NR_039679 ENSG00000284062 MIR4469 mir-4469 microRNA 4469 ncRNA 279.5-13 chr7 18360436 18360904 + 0.833333 NA intron (NM_001321896, intron 1 of 12) L2c|LINE|L2 70578 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 202.5-20 chr4 103679742 103680157 + 0.833333 NA intron (NM_001059, intron 1 of 4) intron (NM_001059, intron 1 of 4) 40036 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 185.833-9 chr11 74307796 74308222 + 0.833333 NA intron (NR_110031, intron 1 of 11) intron (NR_110031, intron 1 of 11) -3353 NR_120556 101928580 Hs.569025 NR_120556 ENSG00000246211 P4HA3-AS1 - P4HA3 antisense RNA 1 ncRNA 218.667-32 chr6 2574470 2574842 + 0.833333 NA Intergenic L1MC3|LINE|L1 -59844 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 153.167-63 chr9 104506115 104506324 + 0.833333 NA TTS (NM_001004485) TTS (NM_001004485) 1956 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 205.833-23 chr3 42575861 42576225 + 0.833333 NA intron (NM_001201572, intron 1 of 6) L1MD2|LINE|L1 -5797 NM_016305 51188 Hs.534454 NM_016305 ENSG00000008324 SS18L2 KIAA-iso SS18 like 2 protein-coding 175-25 chr17 14920931 14921270 + 0.833333 NA Intergenic LTR101_Mam|LTR|ERVL -93705 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 119.667-100 chr8 120112428 120112636 + 0.833333 NA Intergenic Intergenic -12570 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 147-5 chr1 219146482 219146772 + 0.833333 NA intron (NR_038845, intron 3 of 4) intron (NR_038845, intron 3 of 4) 27161 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 203.667-3 chr1 114587601 114587887 + 0.833333 NA exon (NM_198459, exon 16 of 18) exon (NM_198459, exon 16 of 18) -6129 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 157.833-61 chr7 5707910 5708110 + 0.833333 NA intron (NM_207111, intron 13 of 16) AluSx|SINE|Alu 3900 NR_106934 102466203 NR_106934 ENSG00000283419 MIR6874 hsa-mir-6874 microRNA 6874 ncRNA 178.167-22 chr2 11851354 11851909 + 0.833333 NA Intergenic Intergenic -14645 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 138.333-81 chr4 45838874 45839152 + 0.833333 NA Intergenic Intergenic 285041 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 202.667-29 chr21 30888583 30889047 + 0.833333 NA Intergenic MLT1G3|LTR|ERVL-MaLR -7235 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 158.833-47 chr4 110243715 110243905 + 0.833333 NA Intergenic AluSz|SINE|Alu -45195 NM_024090 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 190.333-20 chr16 89204057 89204339 + 0.833333 NA Intergenic L1MB3|LINE|L1 -3661 NM_001366322 146429 Hs.447544 NM_001242757 ENSG00000259803 SLC22A31 - solute carrier family 22 member 31 protein-coding 143.5-93 chr9 89150447 89150637 + 0.833333 NA intron (NM_016848, intron 1 of 11) L1MB7|LINE|L1 28276 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 151-44 chr3 24685477 24685706 + 0.833333 NA Intergenic Intergenic -143732 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 219.5-2 chr1 118382124 118382512 + 0.833333 NA Intergenic THE1C|LTR|ERVL-MaLR -197090 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 182.833-9 chr11 87153851 87154409 + 0.833333 NA intron (NM_001168724, intron 4 of 13) L1MB3|LINE|L1 116196 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 155.5-38 chr3 123474077 123474322 + 0.833333 NA Intergenic Intergenic -25654 NM_183357 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 228.667-34 chr6 132803364 132803774 + 0.833333 NA Intergenic L1MEf|LINE|L1 -4932 NM_052831 116843 Hs.347144 NM_052831 ENSG00000146409 SLC18B1 C6orf192|dJ55C23.6 solute carrier family 18 member B1 protein-coding 182-34 chr3 98167209 98167537 + 0.833333 NA Intergenic Intergenic -1327 NM_001005515 403274 Hs.554713 NM_001005515 ENSG00000233412 OR5H15 - olfactory receptor family 5 subfamily H member 15 protein-coding 174.667-44 chr4 22247080 22247397 + 0.833333 NA Intergenic LTR101_Mam|LTR|ERVL 92428 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 168.667-27 chr2 4766434 4766821 + 0.833333 NA Intergenic Intergenic -110405 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 121.167-17 chr11 115558492 115558822 + 0.833333 NA Intergenic Intergenic -54242 NM_001301043 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 270.667-21 chr6 168255915 168256506 + 0.833333 NA intron (NR_110870, intron 1 of 4) MER72|LTR|ERV1 13272 NR_110870 101929420 Hs.571211 NR_110870 ENSG00000234647 LOC101929420 - uncharacterized LOC101929420 ncRNA 235.5-12 chr15 89984511 89984953 + 0.833333 NA Intergenic MER57A-int|LTR|ERV1 -16592 NM_198526 374655 Hs.459311 NM_198526 ENSG00000140548 ZNF710 - zinc finger protein 710 protein-coding 120.667-57 chr2 69346048 69346306 + 0.833333 NA intron (NM_002056, intron 10 of 18) intron (NM_002056, intron 10 of 18) 41050 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 182.333-40 chr22 27863730 27863985 + 0.833333 NA intron (NM_001284278, intron 8 of 11) intron (NM_001284278, intron 8 of 11) 55357 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 159.667-92 chr8 57315531 57316060 + 0.833333 NA Intergenic L1MA3|LINE|L1 -27992 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 121.333-112 chr8 132751429 132751652 + 0.833333 NA intron (NM_001364885, intron 4 of 9) intron (NM_001364885, intron 4 of 9) 9042 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 156.667-88 chrX 82826889 82827312 + 0.833333 NA Intergenic Intergenic -681190 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 166.167-10 chr12 54892492 54892806 + 0.833333 NA Intergenic L1M3|LINE|L1 38133 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 178.5-23 chr13 57932321 57932639 + 0.833333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -233347 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 168.333-61 chr8 134255508 134255846 + 0.833333 NA Intergenic Intergenic -342394 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 147.5-53 chr20 14320202 14320528 + 0.833333 NA intron (NM_001351663, intron 3 of 17) L2|LINE|L2 17247 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 116.833-49 chr5 36244180 36244404 + 0.833333 NA Intergenic MIRb|SINE|MIR -2013 NM_153013 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 145.667-102 chr8 133036386 133036645 + 0.833333 NA TTS (NM_001282964) TTS (NM_001282964) 10066 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 183.667-61 chr5 25993589 25993858 + 0.833333 NA Intergenic Intergenic 802770 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 222.5-4 chr11 60177480 60177851 + 0.833333 NA intron (NM_022349, intron 4 of 5) intron (NM_022349, intron 4 of 5) 5666 NM_152851 64231 Hs.523702 NM_022349 ENSG00000110077 MS4A6A 4SPAN3|4SPAN3.2|CD20L3|CDA01|MS4A6|MST090|MSTP090 membrane spanning 4-domains A6A protein-coding 151.667-87 chr8 117263615 117263950 + 0.833333 NA Intergenic Intergenic 128787 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 135-25 chr14 67316528 67316747 + 0.833333 NA intron (NM_001256550, intron 9 of 14) intron (NM_001256550, intron 9 of 14) 43167 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 133.333-6 chr1 178718116 178718371 + 0.833333 NA Intergenic L1ME4b|LINE|L1 -6904 NM_001286247 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 156.167-2 chr1 216826626 216826840 + 0.833333 NA intron (NM_001243513, intron 1 of 7) intron (NM_001243513, intron 1 of 7) -21348 NM_001243514 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 188.333-42 chr4 71075300 71075772 + 0.833333 NA Intergenic L2a|LINE|L2 81887 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 213.167-18 chr22 25689749 25690330 + 0.833333 NA intron (NM_001362778, intron 10 of 19) intron (NM_001362778, intron 10 of 19) -52149 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 157.667-66 chr6 144082377 144082586 + 0.833333 NA Intergenic Intergenic 13092 NM_031287 83443 Hs.110695 NM_031287 ENSG00000169976 SF3B5 SF3b10|Ysf3 splicing factor 3b subunit 5 protein-coding 181-62 chr8 15546158 15546469 + 0.833333 NA intron (NM_001356429, intron 1 of 10) intron (NM_001356429, intron 1 of 10) 6050 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 119.833-35 chr18 32192188 32192443 + 0.833333 NA intron (NM_005925, intron 2 of 14) intron (NM_005925, intron 2 of 14) 2276 NM_001308171 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 244-18 chr5 147577530 147577895 + 0.833333 NA intron (NR_038902, intron 1 of 3) MIRb|SINE|MIR 17718 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 157.5-25 chr17 33752161 33752512 + 0.833333 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -218576 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 182.5-35 chr5 129426692 129427042 + 0.833333 NA Intergenic Intergenic -29720 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 148.667-70 chr6 157716187 157716442 + 0.833333 NA Intergenic Intergenic -106932 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 213.667-2 chr10 33228780 33229222 + 0.833333 NA intron (NM_001244973, intron 6 of 16) intron (NM_001244973, intron 6 of 16) 105666 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 162.833-31 chr4 16955853 16956085 + 0.833333 NA Intergenic Intergenic -57160 NM_001304435 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 182.667-55 chr7 76377971 76378328 + 0.833333 NA Intergenic L2a|LINE|L2 -19158 NM_012479 7532 Hs.744840 NM_012479 ENSG00000170027 YWHAG 14-3-3GAMMA|EIEE56|PPP1R170 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma protein-coding 238.833-16 chr8 83402039 83402548 + 0.833333 NA Intergenic Intergenic -1465 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 190.333-7 chr10 32335492 32335925 + 0.833333 NA intron (NM_001282391, intron 1 of 13) L2a|LINE|L2 11450 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 175.333-3 chr10 60785961 60786299 + 0.833333 NA 3' UTR (NM_001170406, exon 4 of 4) 3' UTR (NM_001170406, exon 4 of 4) 7652 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 144-38 chr2 170806304 170806803 + 0.833333 NA Intergenic Intergenic -10137 NM_013445 2571 Hs.420036 NM_000817 ENSG00000128683 GAD1 CPSQ1|GAD|SCP glutamate decarboxylase 1 protein-coding 118.333-90 chr5 41497072 41497237 + 0.833333 NA intron (NM_001005473, intron 1 of 2) L1M4c|LINE|L1 13447 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 181-46 chr3 122611260 122611543 + 0.833333 NA intron (NM_001308320, intron 3 of 8) AluSx1|SINE|Alu -4214 NM_152615 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 258.667-4 chr1 168360419 168360867 + 0.833333 NA Intergenic Intergenic -14881 NR_030284 693142 NR_030284 ENSG00000207974 MIR557 MIRN557|hsa-mir-557 microRNA 557 ncRNA 187.5-24 chr2 210816880 210817363 + 0.833333 NA Intergenic Intergenic 199550 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 145.333-35 chr18 21849230 21849459 + 0.833333 NA exon (NM_020774, exon 17 of 21) exon (NM_020774, exon 17 of 21) -17938 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 167.667-12 chr10 121963203 121963437 + 0.833333 NA exon (NM_017615, exon 6 of 11) exon (NM_017615, exon 6 of 11) 11897 NM_017615 54780 Hs.258798 NM_017615 ENSG00000107672 NSMCE4A C10orf86|NS4EA|NSE4A NSE4 homolog A, SMC5-SMC6 complex component protein-coding 115.5-2 chr1 55315997 55316167 + 0.833333 NA Intergenic MIRb|SINE|MIR 90441 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 228-5 chr10 95631993 95632388 + 0.833333 NA intron (NM_001323414, intron 7 of 17) L1MB8|LINE|L1 24521 NM_001323416 5832 Hs.500645 NM_002860 ENSG00000059573 ALDH18A1 ADCL3|ARCL3A|GSAS|P5CS|PYCS|SPG9|SPG9A|SPG9B aldehyde dehydrogenase 18 family member A1 protein-coding 223.833-22 chr6 134491873 134492186 + 0.833333 NA intron (NR_038219, intron 4 of 4) L1ME2|LINE|L1 -13132 NR_125852 101928231 Hs.634168 NR_125852 CT69 - cancer/testis associated transcript 69 ncRNA 214.333-31 chr3 80943665 80944099 + 0.833333 NA Intergenic Intergenic -49986 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 283.167-6 chr22 20964075 20964673 + 0.833333 NA promoter-TSS (NM_001018060) promoter-TSS (NM_001018060) -798 NM_144704 150209 Hs.723246 NM_144704 ENSG00000183773 AIFM3 AIFL apoptosis inducing factor mitochondria associated 3 protein-coding 232.167-9 chr12 45340005 45340526 + 0.833333 NA intron (NM_001025356, intron 3 of 19) intron (NM_001025356, intron 3 of 19) 47575 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 188.667-38 chr4 44084607 44085100 + 0.833333 NA Intergenic Intergenic 67791 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 121.5-13 chr10 27641591 27641858 + 0.833333 NA Intergenic L1M4c|LINE|L1 -102891 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 144.667-30 chr12 96651217 96651396 + 0.833333 NA intron (NM_001306084, intron 35 of 67) L2a|LINE|L2 161729 NM_001367885 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 179.167-18 chr15 67960192 67960816 + 0.833333 NA Intergenic L1ME3G|LINE|L1 -93675 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 146.167-81 chrX 141405906 141406192 + 0.833333 NA Intergenic Intergenic -96800 NR_037183 619455 Hs.590784 NR_037183 ENSG00000277215 SPANXA2-OT1 CXorf18 SPANXA2 overlapping transcript 1 ncRNA 136.833-74 chr8 24324627 24324841 + 0.833333 NA intron (NM_014265, intron 9 of 22) MLT1H1|LTR|ERVL-MaLR 30665 NM_014265 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 117.833-87 chr9 118080073 118080246 + 0.833333 NA Intergenic MLT1F2|LTR|ERVL-MaLR 375756 NM_138557 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 163.333-81 chr8 133014929 133015262 + 0.833333 NA intron (NM_003235, intron 37 of 47) AluSz6|SINE|Alu 31486 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 248-14 chr3 118764997 118765336 + 0.833333 NA intron (NR_135547, intron 1 of 3) (AG)n|Simple_repeat|Simple_repeat 45667 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 166.5-26 chr17 63851076 63851361 + 0.833333 NA Intergenic Intergenic -5798 NR_002947 146771 Hs.629177 NR_002947 ENSG00000240280 TCAM1P TCAM1 testicular cell adhesion molecule 1, pseudogene pseudo 160-27 chr14 53867185 53867469 + 0.833333 NA Intergenic L1ME3Cz|LINE|L1 81157 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 135.333-77 chr7 90005775 90005982 + 0.833333 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -113522 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 119.333-91 chr5 168994336 168994521 + 0.833333 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) -18799 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 188-35 chr20 34118401 34118651 + 0.833333 NA Intergenic Intergenic -6283 NM_001316364 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 198.333-21 chr2 62688616 62688961 + 0.833333 NA intron (NM_001142615, intron 1 of 22) intron (NM_001142615, intron 1 of 22) 14910 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 184.667-37 chr4 59533382 59533662 + 0.833333 NA Intergenic Intergenic 519949 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 204.333-34 chr3 86628940 86629276 + 0.833333 NA Intergenic L1MEi|LINE|L1 147165 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 138.167-79 chr9 36670307 36670599 + 0.833333 NA intron (NM_001256691, intron 13 of 15) L1MC4|LINE|L1 97558 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 158.667-73 chr6 42905687 42905990 + 0.833333 NA Intergenic MIR1_Amn|SINE|MIR -10151 NM_001243170 171558 Hs.169002 NM_138296 ENSG00000171611 PTCRA PT-ALPHA|PTA pre T cell antigen receptor alpha protein-coding 197.333-15 chr14 53543504 53543826 + 0.833333 NA Intergenic Intergenic 390311 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 233.167-19 chr2 32321557 32322060 + 0.833333 NA Intergenic LTR32|LTR|ERVL -35220 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 205.167-33 chr5 28409432 28409904 + 0.833333 NA Intergenic AluSx|SINE|Alu -122003 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 168.333-37 chr3 39181245 39181546 + 0.833333 NA Intergenic L2a|LINE|L2 11200 NM_001351377 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 128.333-22 chr11 105716181 105716726 + 0.833333 NA intron (NR_046356, intron 2 of 16) intron (NR_046356, intron 2 of 16) 105747 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 133.333-108 chr6 116555535 116555790 + 0.833333 NA intron (NM_001366078, intron 1 of 1) MIRb|SINE|MIR 2531 NM_001366078 221301 Hs.350750 NM_153036 ENSG00000164451 CALHM4 C6orf78|FAM26D calcium homeostasis modulator family member 4 protein-coding 190.167-25 chr2 9715094 9715482 + 0.833333 NA Intergenic Intergenic -84291 NM_006826 10971 Hs.74405 NM_006826 ENSG00000134308 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 168.833-14 chr12 34520441 34520685 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 498067 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 127.667-2 chr1 53052307 53052526 + 0.833333 NA TTS (NM_001007100) TTS (NM_001007100) -9636 NM_001199081 127435 Hs.586141 NM_153703 ENSG00000174348 PODN PCAN|SLRR5A podocan protein-coding 269-9 chr20 34953208 34953793 + 0.833333 NA intron (NM_001322494, intron 1 of 12) intron (NM_001322494, intron 1 of 12) 2135 NM_001322495 2937 Hs.82327 NM_000178 ENSG00000100983 GSS GSHS|HEL-S-64p|HEL-S-88n glutathione synthetase protein-coding 129-58 chr3 148817412 148817637 + 0.833333 NA Intergenic Intergenic -10287 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 126.167-62 chr4 28946593 28946804 + 0.833333 NA Intergenic Tigger2a|DNA|TcMar-Tigger -50086 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 124.833-38 chr2 61459209 61459517 + 0.833333 NA intron (NM_014709, intron 1 of 79) intron (NM_014709, intron 1 of 79) 11724 NM_014709 9736 Hs.644708 NM_014709 ENSG00000115464 USP34 - ubiquitin specific peptidase 34 protein-coding 185.333-7 chr10 63629378 63629696 + 0.833333 NA Intergenic Intergenic -107647 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 168.167-49 chr6 94508545 94508870 + 0.833333 NA Intergenic AluJb|SINE|Alu 790404 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 162.5-45 chr3 65413654 65413948 + 0.833333 NA intron (NM_001365904, intron 12 of 24) intron (NM_001365904, intron 12 of 24) -480015 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 133.667-107 chrX 87242277 87242536 + 0.833333 NA Intergenic L1M1|LINE|L1 -275396 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 166.167-40 chr4 147929077 147929524 + 0.833333 NA intron (NM_024605, intron 13 of 22) intron (NM_024605, intron 13 of 22) 146705 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 187.333-33 chr2 47537834 47538150 + 0.833333 NA intron (NM_022055, intron 1 of 1) intron (NM_022055, intron 1 of 1) 10455 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 357.333-2 chr12 118431201 118431712 + 0.833333 NA Intergenic MER102c|DNA|hAT-Charlie 54901 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 142.833-53 chr4 92126291 92126502 + 0.833333 NA Intergenic Intergenic 150906 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 168.333-45 chr6 43959476 43959717 + 0.833333 NA Intergenic Tigger2|DNA|TcMar-Tigger -40989 NR_160955 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 ncRNA 171.167-6 chr1 222702196 222702441 + 0.833333 NA intron (NM_022831, intron 2 of 9) intron (NM_022831, intron 2 of 9) 10173 NM_022831 64853 Hs.156625 NM_022831 ENSG00000186063 AIDA C1orf80 axin interactor, dorsalization associated protein-coding 271.333-5 chr11 27311999 27312686 + 0.833333 NA Intergenic Intergenic 50873 NM_030771 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 179.833-5 chr10 9834639 9835064 + 0.833333 NA Intergenic Intergenic -223871 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 246.167-16 chr22 28375362 28375794 + 0.833333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -84291 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 185-57 chr9 103080906 103081331 + 0.833333 NA Intergenic Intergenic 85785 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 138.833-84 chr8 56006252 56006493 + 0.833333 NA intron (NM_002350, intron 12 of 12) intron (NM_002350, intron 12 of 12) 67529 NR_002437 26795 NR_002437 ENSG00000238650 SNORD54 RNU54|U54 small nucleolar RNA, C/D box 54 snoRNA 121.333-10 chr10 21224423 21224842 + 0.833333 NA Intergenic L1MA3|LINE|L1 50330 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 190.833-43 chr8 126597815 126598123 + 0.833333 NA Intergenic L1MD2|LINE|L1 -39491 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 126.167-37 chr2 61479210 61479491 + 0.833333 NA intron (NM_003400, intron 24 of 24) AluSz|SINE|Alu -8263 NM_014709 9736 Hs.644708 NM_014709 ENSG00000115464 USP34 - ubiquitin specific peptidase 34 protein-coding 170-79 chr8 107493687 107494075 + 0.833333 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 4037 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 268.833-3 chr1 105464891 105465427 + 0.833333 NA Intergenic L1MCb|LINE|L1 153776 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 168.167-12 chr11 112592318 112592758 + 0.833333 NA Intergenic LTR102_Mam|LTR|ERVL -36736 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 192.333-49 chr7 37632699 37633077 + 0.833333 NA Intergenic L1MA2|LINE|L1 -50878 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 221.333-25 chr7 5829664 5830175 + 0.833333 NA intron (NR_023382, intron 1 of 6) L1MCc|LINE|L1 6759 NR_023382 401303 Hs.372707 NR_023382 ZNF815P ZNF815 zinc finger protein 815, pseudogene pseudo 255.833-15 chr5 54512338 54512760 + 0.833333 NA Intergenic MIRb|SINE|MIR -5210 NM_001145427 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 155.833-19 chr14 87203155 87203510 + 0.833333 NA Intergenic Intergenic 297554 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 220.167-5 chr10 124539162 124539793 + 0.833333 NA intron (NM_022126, intron 6 of 6) AluJb|SINE|Alu 77654 NM_001318332 64077 Hs.527748 NM_022126 ENSG00000107902 LHPP HDHD2B phospholysine phosphohistidine inorganic pyrophosphate phosphatase protein-coding 199.167-25 chr3 106716734 106717157 + 0.833333 NA Intergenic Intergenic 523693 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 189.166-2 chr12 105114800 105115305 + 0.833333 NA intron (NM_001293640, intron 4 of 32) intron (NM_001293640, intron 4 of 32) 7321 NM_015275 23325 Hs.12144 NM_015275 ENSG00000136051 WASHC4 KIAA1033|MRT43|SWIP WASH complex subunit 4 protein-coding 151.5-60 chr5 108227450 108227850 + 0.833333 NA intron (NM_001163315, intron 4 of 8) intron (NM_001163315, intron 4 of 8) 154448 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 138.667-47 chr2 102769732 102769949 + 0.833333 NA intron (NM_001321346, intron 3 of 3) intron (NM_001321346, intron 3 of 3) 7809 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 202.167-29 chr6 47922493 47922944 + 0.833333 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 135650 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 176.667-2 chr1 57130256 57130533 + 0.833333 NA intron (NM_001365793, intron 4 of 14) L1MA8|LINE|L1 -164254 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 292.667-2 chr12 9869218 9869922 + 0.833333 NA 5' UTR (NM_005127, exon 1 of 5) 5' UTR (NM_005127, exon 1 of 5) 289 NM_005127 9976 Hs.85201 NM_005127 ENSG00000110852 CLEC2B AICL|CLECSF2|HP10085|IFNRG1 C-type lectin domain family 2 member B protein-coding 181-21 chr13 88614641 88615031 + 0.833333 NA Intergenic L1MA10|LINE|L1 -12017 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 174.167-8 chr10 84371764 84372152 + 0.833333 NA exon (NM_001284240, exon 2 of 10) exon (NM_001284240, exon 2 of 10) 43369 NM_001351292 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 223.833-20 chr3 111704767 111705299 + 0.833333 NA intron (NM_001185106, intron 1 of 4) AluSz|SINE|Alu -27463 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 160.667-25 chr14 58280765 58281228 + 0.833333 NA intron (NR_029435, intron 2 of 3) intron (NR_029435, intron 2 of 3) -7037 NR_146595 55451 NR_146595 ENSG00000279636 LINC00216 C14orf107|NCRNA00216|PRO1617 long intergenic non-protein coding RNA 216 ncRNA 166.667-35 chr3 115709071 115709360 + 0.833333 NA intron (NM_002045, intron 2 of 2) intron (NM_002045, intron 2 of 2) 85705 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 183.333 chr1 41281716 41282047 + 0.833333 NA Intergenic MIRb|SINE|MIR -39575 NM_001350667 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 214.5-20 chr2 67374876 67375164 + 0.833333 NA Intergenic Charlie24|DNA|hAT-Charlie -22313 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 156.333-96 chr9 33295287 33295642 + 0.833333 NA intron (NM_002504, intron 2 of 23) intron (NM_002504, intron 2 of 23) 4948 NM_001318758 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 148.667-78 chr8 88415291 88415496 + 0.833333 NA Intergenic Intergenic -87910 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 169.167-42 chr8 84179710 84180217 + 0.833333 NA Intergenic Intergenic -2824 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 124.167-4 chr1 60386944 60387118 + 0.833333 NA Intergenic LTR40A1|LTR|ERVL 235654 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 169.833-24 chr4 83974623 83974937 + 0.833333 NA intron (NR_125909, intron 8 of 8) intron (NR_125909, intron 8 of 8) 324389 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 128.167-45 chr21 31947849 31948074 + 0.833333 NA intron (NM_014586, intron 4 of 10) MIR|SINE|MIR 74941 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 141-2 chr1 97729828 97730362 + 0.833333 NA intron (NM_000110, intron 4 of 22) intron (NM_000110, intron 4 of 22) -66826 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 218.5-30 chr8 33268626 33269089 + 0.833333 NA Intergenic Intergenic 204289 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 253.833-3 chr17 51208448 51208937 + 0.833333 NA intron (NM_017643, intron 6 of 16) intron (NM_017643, intron 6 of 16) 41970 NM_001018138 4831 Hs.463456 NM_002512 ENSG00000243678 NME2 NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF NME/NM23 nucleoside diphosphate kinase 2 protein-coding 237.5-32 chr8 114782126 114782448 + 0.833333 NA Intergenic Intergenic 885726 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 117.833-86 chr9 92509732 92509958 + 0.833333 NA intron (NM_001197296, intron 6 of 9) intron (NM_001197296, intron 6 of 9) 18213 NR_039817 100616351 NR_039817 ENSG00000264158 MIR4670 - microRNA 4670 ncRNA 177.5-57 chr4 35509287 35509551 + 0.833333 NA Intergenic AluSx|SINE|Alu 734520 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 294.333-5 chr15 62670230 62670838 + 0.833333 NA intron (NM_015059, intron 6 of 55) intron (NM_015059, intron 6 of 55) 23223 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 173.667-2 chr1 75966387 75966792 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR -34185 NR_026546 127247 Hs.125423 NM_080868 ENSG00000154007 ASB17 Asb-17 ankyrin repeat and SOCS box containing 17 protein-coding 158.833-38 chr3 24682075 24682283 + 0.833333 NA Intergenic MER5B|DNA|hAT-Charlie -147144 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 218.5-22 chr3 80107467 80107805 + 0.833333 NA Intergenic L1M7|LINE|L1 -339638 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 142-18 chr10 75567250 75567460 + 0.833333 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) 14897 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 172.667-77 chr8 116713052 116713452 + 0.833333 NA intron (NM_003756, intron 2 of 7) intron (NM_003756, intron 2 of 7) 42571 NM_003756 8667 Hs.492599 NM_003756 ENSG00000147677 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3 subunit H protein-coding 163.167-8 chr12 79775839 79776148 + 0.833333 NA exon (NM_001143886, exon 25 of 25) exon (NM_001143886, exon 25 of 25) -84896 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 183.333-11 chr11 25540345 25540633 + 0.833333 NA Intergenic Intergenic -648634 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 148.167-73 chr6 47290504 47290872 + 0.833333 NA intron (NM_014452, intron 1 of 5) intron (NM_014452, intron 1 of 5) 19217 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 126.333-11 chr10 33297916 33298097 + 0.833333 NA intron (NM_001244973, intron 2 of 16) intron (NM_001244973, intron 2 of 16) 36661 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 142.167-60 chr5 5203707 5203937 + 0.833333 NA intron (NM_139056, intron 9 of 22) intron (NM_139056, intron 9 of 22) 63492 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 159.167-18 chr14 69013818 69014137 + 0.833333 NA Intergenic Intergenic 34295 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 328.667-13 chr5 132756212 132756879 + 0.833333 NA 3' UTR (NM_015146, exon 10 of 10) 3' UTR (NM_015146, exon 10 of 10) 9100 NM_001287252 645121 Hs.522057 NM_001039780 ENSG00000205089 CCNI2 - cyclin I family member 2 protein-coding 204.333-53 chr8 88285792 88286297 + 0.833333 NA intron (NM_005941, intron 1 of 9) L2b|LINE|L2 41439 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 275.667-4 chr12 5318455 5319123 + 0.833333 NA Intergenic Intergenic -75638 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 251.333-3 chr10 69324909 69325232 + 0.833333 NA intron (NM_001322367, intron 1 of 16) AluY|SINE|Alu 6223 NM_001322367 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 144.333-40 chr17 73694465 73694720 + 0.833333 NA Intergenic Intergenic -43262 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 120.167-76 chr7 92974677 92974876 + 0.833333 NA Intergenic Intergenic -138149 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 198.833-14 chr2 137424527 137424854 + 0.833333 NA intron (NM_001316349, intron 14 of 27) L1MA9|LINE|L1 503242 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 171.5-4 chr1 246206185 246206428 + 0.833333 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 211106 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 126.833-48 chr4 112027110 112027378 + 0.833333 NA Intergenic Intergenic -118210 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 129.833-52 chr5 14435506 14435856 + 0.833333 NA intron (NM_007118, intron 34 of 56) L1MC4a|LINE|L1 -28302 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 261.833-17 chr7 102863018 102863482 + 0.833333 NA intron (NR_105043, intron 17 of 20) intron (NR_105043, intron 17 of 20) -49750 NM_001031692 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 143.5-22 chr14 40394004 40394324 + 0.833333 NA Intergenic Intergenic -560547 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 210-36 chr8 136307496 136307813 + 0.833333 NA Intergenic Intergenic -223144 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 200-63 chr7 54617797 54618153 + 0.833333 NA Intergenic MIR|SINE|MIR 61005 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 183.5-58 chr8 127430128 127430520 + 0.833333 NA intron (NR_117100, intron 4 of 5) intron (NR_117100, intron 4 of 5) 14499 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 192.333-43 chr5 36002493 36002911 + 0.833333 NA Intergenic AluSx1|SINE|Alu -1680 NM_001171873 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 130.5-4 chr1 105318089 105318396 + 0.833333 NA Intergenic L1MA2|LINE|L1 300693 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 202.833-27 chr7 28886610 28886891 + 0.833333 NA Intergenic L1MC4a|LINE|L1 71580 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 158.667-30 chr15 86800880 86801300 + 0.833333 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -131790 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 249-20 chr8 106914052 106914501 + 0.833333 NA Intergenic MIRb|SINE|MIR -144032 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 211.667-37 chr6 143674336 143674816 + 0.833333 NA intron (NM_014721, intron 1 of 12) intron (NM_014721, intron 1 of 12) -3389 NM_001100165 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 128.167-34 chr16 86344533 86344785 + 0.833333 NA intron (NR_024406, intron 1 of 6) intron (NR_024406, intron 1 of 6) 1020 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 141.833-22 chr2 183134969 183135274 + 0.833333 NA intron (NR_109856, intron 4 of 7) MLT1D|LTR|ERVL-MaLR 10678 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 289.834-5 chr18 1865779 1866608 + 0.833333 NA Intergenic L1MB3|LINE|L1 -506564 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 134.667-73 chr4 79472180 79472371 + 0.833333 NA Intergenic Intergenic -20318 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 117-63 chr20 59206136 59206345 + 0.833333 NA intron (NM_178457, intron 2 of 4) Charlie7|DNA|hAT-Charlie 15220 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 217.167-7 chr14 75026916 75027251 + 0.833333 NA intron (NM_014381, intron 8 of 11) AluSx1|SINE|Alu 24162 NM_014239 8892 Hs.409137 NM_014239 ENSG00000119718 EIF2B2 EIF-2Bbeta|EIF2B eukaryotic translation initiation factor 2B subunit beta protein-coding 240-14 chr17 59688595 59689117 + 0.833333 NA intron (NM_001288653, intron 30 of 31) intron (NM_001288653, intron 30 of 31) 18742 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 215.667-27 chr20 7828914 7829230 + 0.833333 NA Intergenic CR1-3_Croc|LINE|CR1 111386 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 206.167-21 chr5 140485536 140485864 + 0.833333 NA exon (NM_017747, exon 13 of 34) exon (NM_017747, exon 13 of 34) -61962 NM_003732 8637 Hs.594084 NM_003732 ENSG00000243056 EIF4EBP3 4E-BP3|4EBP3 eukaryotic translation initiation factor 4E binding protein 3 protein-coding 211-17 chr16 1639302 1639791 + 0.833333 NA intron (NM_020825, intron 4 of 19) MER51A|LTR|ERV1 24906 NM_020825 57585 Hs.603676 NM_020825 ENSG00000007545 CRAMP1 CRAMP1L|HN1L|TCE4 cramped chromatin regulator homolog 1 protein-coding 119.167-61 chr3 64677095 64677409 + 0.833333 NA intron (NM_001318781, intron 3 of 38) intron (NM_001318781, intron 3 of 38) -7618 NR_038264 100507098 Hs.660881 NR_038264 ENSG00000241684 ADAMTS9-AS2 - ADAMTS9 antisense RNA 2 ncRNA 185-25 chr2 59417442 59417975 + 0.833333 NA Intergenic L1ME5|LINE|L1 200000 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 249.667-6 chr10 87815021 87815628 + 0.833333 NA intron (NM_001321967, intron 1 of 9) intron (NM_001321967, intron 1 of 9) 2907 NM_001321967 84896 Hs.435948 NM_032810 ENSG00000138138 ATAD1 AFDC1|FNP001|HKPX4|THORASE ATPase family AAA domain containing 1 protein-coding 139.333-12 chr10 86509860 86510063 + 0.833333 NA intron (NM_001318328, intron 2 of 18) AluSx3|SINE|Alu 11823 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 167.167-41 chr22 22225653 22226051 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -18934 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 133.333-64 chr20 41752763 41753041 + 0.833333 NA Intergenic L1ME4b|LINE|L1 -134525 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 224.333-18 chr2 103489939 103490244 + 0.833333 NA Intergenic Tigger2|DNA|TcMar-Tigger -505662 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 122.5-70 chr5 50790686 50790919 + 0.833333 NA intron (NM_024615, intron 10 of 25) Tigger15a|DNA|TcMar-Tigger 123388 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 371-3 chr2 80450052 80450547 + 0.833333 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 136920 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 221.833-22 chr5 147517721 147518153 + 0.833333 NA Intergenic Intergenic -7869 NM_001197294 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 153.5-2 chr1 82082089 82082337 + 0.833333 NA Intergenic Intergenic 279760 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 199.5-3 chr1 189107113 189107661 + 0.833333 NA Intergenic Intergenic 1368623 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 239.667-23 chr4 32710171 32710635 + 0.833333 NA Intergenic Intergenic 359365 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 150-14 chr12 104765601 104766120 + 0.833333 NA Intergenic Intergenic 174227 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 169.167-25 chr2 57384198 57384431 + 0.833333 NA Intergenic Intergenic -523337 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 242.333-15 chr3 150377668 150378137 + 0.833333 NA Intergenic Intergenic -30396 NM_014779 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 148.333-15 chr11 17175979 17176164 + 0.833333 NA intron (NM_002645, intron 1 of 32) AluSx1|SINE|Alu 31915 NM_001321380 5286 Hs.175343 NM_002645 ENSG00000011405 PIK3C2A CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 178.167-39 chr5 151569611 151569933 + 0.833333 NA promoter-TSS (NM_001447) promoter-TSS (NM_001447) -828 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 154.5-59 chr5 158704174 158704528 + 0.833333 NA intron (NM_001324107, intron 15 of 15) intron (NM_001324107, intron 15 of 15) -294578 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 206.5-7 chr12 66032902 66033437 + 0.833333 NA Intergenic AluJo|SINE|Alu -2103 NR_146530 105369810 NR_146530 ENSG00000256259 LINC02425 - long intergenic non-protein coding RNA 2425 ncRNA 236.5-29 chr7 5446153 5446500 + 0.833333 NA Intergenic Intergenic -17399 NM_001354886 100129484 Hs.147507 NM_001354886 LOC100129484 - uncharacterized LOC100129484 protein-coding 201.167-35 chr9 27327618 27328081 + 0.833333 NA 3' UTR (NM_024761, exon 4 of 4) 3' UTR (NM_024761, exon 4 of 4) -30699 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 136.667-101 chr8 50299756 50299925 + 0.833333 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 135709 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 211.167-12 chr17 53970957 53971507 + 0.833333 NA Intergenic Intergenic 148305 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 205.333-39 chr3 163885077 163885617 + 0.833333 NA Intergenic Intergenic 286209 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 227.5-16 chr18 69034111 69034394 + 0.833333 NA intron (NM_001093729, intron 9 of 9) L1ME1|LINE|L1 236172 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 189.5-37 chr3 4950937 4951425 + 0.833333 NA intron (NR_125915, intron 1 of 3) intron (NR_125915, intron 1 of 3) -28256 NM_003670 8553 Hs.744856 NM_003670 ENSG00000134107 BHLHE40 BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14 basic helix-loop-helix family member e40 protein-coding 312.833-3 chr14 73040535 73041011 + 0.833333 NA Intergenic 7SLRNA|srpRNA|srpRNA -13667 NM_001281734 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 175.5-15 chr12 60976497 60976735 + 0.833333 NA Intergenic Intergenic 1216223 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 153.333-67 chr6 38829520 38829753 + 0.833333 NA intron (NM_001371, intron 29 of 91) L1MB7|LINE|L1 114325 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 230.833-2 chr1 217529441 217529839 + 0.833333 NA intron (NM_018040, intron 5 of 9) MSTB2|LTR|ERVL-MaLR 101450 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 138.667-60 chr3 178830426 178830715 + 0.833333 NA intron (NM_181361, intron 4 of 4) L1ME3B|LINE|L1 29835 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 129-93 chr7 23727057 23727492 + 0.833333 NA exon (NM_001260504, exon 5 of 24) exon (NM_001260504, exon 5 of 24) 17055 NM_001260505 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 165.333-6 chr10 63136642 63136929 + 0.833333 NA intron (NM_001282405, intron 1 of 2) intron (NM_001282405, intron 1 of 2) 3457 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 181.833-21 chr2 20757072 20757540 + 0.833333 NA intron (NM_021925, intron 4 of 6) L1MEg|LINE|L1 65795 NM_021925 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 143.833-27 chr3 27690138 27690401 + 0.833333 NA Intergenic L1MA1|LINE|L1 32054 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 162.333-27 chr18 61773834 61774110 + 0.833333 NA Intergenic Intergenic 25796 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 166.833-18 chr18 3921393 3921720 + 0.833333 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) 36203 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 151.167-57 chr8 130731860 130732069 + 0.833333 NA Intergenic FRAM|SINE|Alu -288290 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 241.333-30 chr8 104413537 104413934 + 0.833333 NA intron (NM_001385, intron 7 of 9) intron (NM_001385, intron 7 of 9) 53320 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 121.667-23 chr14 39667490 39667863 + 0.833333 NA Intergenic Intergenic -235176 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 317.167 chr1 182235150 182235690 + 0.833333 NA intron (NR_104175, intron 2 of 2) LTR67B|LTR|ERVL 78641 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 146-17 chr13 103930336 103930604 + 0.833333 NA Intergenic Intergenic 505270 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 175.333-14 chr14 45468270 45468576 + 0.833333 NA Intergenic Intergenic -215221 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 285.167-5 chr2 190251855 190252233 + 0.833333 NA intron (NM_198047, intron 8 of 12) MIRb|SINE|MIR 67782 NM_014362 26275 Hs.656685 NM_014362 ENSG00000198130 HIBCH HIBYLCOAH 3-hydroxyisobutyryl-CoA hydrolase protein-coding 173.5-49 chr6 116445250 116445713 + 0.833333 NA TTS (NM_001322943) TTS (NM_001322943) -15894 NM_001010919 441168 Hs.381220 NM_001010919 ENSG00000188820 CALHM6 C6orf187|FAM26F|INAM|dJ93H18.5 calcium homeostasis modulator family member 6 protein-coding 128.833-59 chr3 157407602 157407848 + 0.833333 NA intron (NM_024621, intron 6 of 13) intron (NM_024621, intron 6 of 13) -29125 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 113.667-30 chr12 10714040 10714281 + 0.833333 NA intron (NM_001145426, intron 4 of 8) intron (NM_001145426, intron 4 of 8) 9163 NM_001145426 8531 Hs.221889 NM_003651 ENSG00000060138 YBX3 CSDA|CSDA1|DBPA|ZONAB Y-box binding protein 3 protein-coding 181.833-55 chr9 36812342 36812828 + 0.833333 NA Intergenic Intergenic 11014 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 219.5-5 chr11 20750067 20750751 + 0.833333 NA intron (NM_201551, intron 2 of 18) L1ME3|LINE|L1 80823 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 125.167-40 chr2 107962075 107962427 + 0.833333 NA Intergenic Intergenic -24273 NM_021815 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 189.833-25 chr6 123637540 123637840 + 0.833333 NA promoter-TSS (NM_001256022) promoter-TSS (NM_001256022) -597 NM_001256022 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 164.667-70 chr7 1412733 1412947 + 0.833333 NA Intergenic CpG 46630 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 129.833-43 chr3 24931466 24931770 + 0.833333 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 102295 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 151.5-10 chr1 229668823 229669167 + 0.833333 NA Intergenic MIRb|SINE|MIR 42748 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 254.333-16 chr7 135113645 135114080 + 0.833333 NA intron (NM_001305630, intron 2 of 2) L1MB2|LINE|L1 -34210 NM_018295 55281 Hs.521213 NM_018295 ENSG00000146859 TMEM140 - transmembrane protein 140 protein-coding 198.167-19 chr20 10074406 10074803 + 0.833333 NA intron (NR_040710, intron 3 of 4) intron (NR_040710, intron 3 of 4) 39617 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 193.167-7 chr10 56234091 56234361 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR 127033 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 187.167-29 chr5 16542563 16542945 + 0.833333 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) -33756 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 179.5-6 chr12 99027124 99027388 + 0.833333 NA intron (NM_152788, intron 17 of 25) intron (NM_152788, intron 17 of 25) -66103 NR_110095 101928937 Hs.555499 NR_110095 ENSG00000258039 LOC101928937 - uncharacterized LOC101928937 ncRNA 181.833-31 chr20 57234612 57234846 + 0.833333 NA intron (NM_001719, intron 1 of 6) intron (NM_001719, intron 1 of 6) 21033 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 176.667-26 chr17 59678313 59678658 + 0.833333 NA intron (NM_001288653, intron 17 of 31) L1MC4|LINE|L1 29113 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 113.5-34 chr12 117560965 117561203 + 0.833333 NA intron (NM_173598, intron 7 of 19) MER113|DNA|hAT-Charlie -199282 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 156.167-44 chr3 153004058 153004284 + 0.833333 NA Intergenic Intergenic -158055 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 122-85 chr8 24242983 24243264 + 0.833333 NA Intergenic L1M4c|LINE|L1 -50917 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 144.333-57 chr3 5077761 5078224 + 0.833333 NA Intergenic MamGypLTR2b|LTR|Gypsy -44300 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 143.833-3 chr10 7160511 7160889 + 0.833333 NA 3' UTR (NM_001018039, exon 21 of 21) 3' UTR (NM_001018039, exon 21 of 21) 26084 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 193.333-30 chr2 122998369 122998765 + 0.833333 NA Intergenic L1ME3G|LINE|L1 74914 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 257.833-15 chr9 115454991 115455470 + 0.833333 NA Intergenic MIRb|SINE|MIR 289009 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 187-38 chr6 74605282 74605699 + 0.833333 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 523292 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 200.666 chr1 46589081 46589607 + 0.833333 NA intron (NR_024176, intron 2 of 12) L2c|LINE|L2 14924 NM_003684 8569 Hs.371594 NM_003684 ENSG00000079277 MKNK1 MNK1 MAPK interacting serine/threonine kinase 1 protein-coding 161-24 chr18 1289690 1289914 + 0.833333 NA intron (NR_023926, intron 2 of 5) L1MB8|LINE|L1 69827 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 113.167-66 chr6 65234170 65234420 + 0.833333 NA intron (NM_001292009, intron 12 of 43) L1M4b|LINE|L1 -67123 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 146.167-52 chr5 39431976 39432174 + 0.833333 NA Intergenic L1ME3C|LINE|L1 -6842 NM_001244871 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 162.667-17 chr13 69495433 69495700 + 0.833333 NA Intergenic Intergenic 273220 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 209.333-17 chr2 81906508 81906832 + 0.833333 NA Intergenic Intergenic -439724 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 135.667 chr1 17815319 17815572 + 0.833333 NA intron (NM_030812, intron 1 of 2) L1ME1|LINE|L1 60112 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 138-79 chr4 92658542 92658725 + 0.833333 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 354234 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 221-13 chr14 72829222 72829721 + 0.833333 NA intron (NM_001280542, intron 1 of 10) AluSx3|SINE|Alu 63178 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 244.833-12 chr3 188871074 188871622 + 0.833333 NA intron (NM_001167672, intron 8 of 9) intron (NM_001167672, intron 8 of 9) 76291 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 172-45 chr3 181426255 181426681 + 0.833333 NA intron (NR_125407, intron 3 of 4) Charlie5|DNA|hAT-Charlie 16018 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 199.5-18 chr2 17941642 17941968 + 0.833333 NA Intergenic MIRb|SINE|MIR 63138 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 128.333-90 chr4 78682240 78682503 + 0.833333 NA non-coding (NR_038304, exon 4 of 4) non-coding (NR_038304, exon 4 of 4) 36377 NR_038304 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 135.333-81 chr8 46462876 46463207 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 154602 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 159.333-50 chr3 157414094 157414460 + 0.833333 NA intron (NM_024621, intron 5 of 13) intron (NM_024621, intron 5 of 13) -22573 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 269.333-8 chr14 102331104 102331485 + 0.833333 NA intron (NM_001267828, intron 2 of 7) AluSz|SINE|Alu 11548 NM_018335 55778 Hs.743359 NM_018335 ENSG00000022976 ZNF839 C14orf131 zinc finger protein 839 protein-coding 115.833-13 chr12 43401145 43401499 + 0.833333 NA intron (NM_025003, intron 28 of 38) intron (NM_025003, intron 28 of 38) 150881 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 121.667-71 chr4 63659535 63659764 + 0.833333 NA Intergenic Intergenic 749801 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 140.333-44 chr21 30490829 30491021 + 0.833333 NA TTS (NM_181609) TTS (NM_181609) 1088 NM_181609 337970 Hs.60480 NM_181609 ENSG00000244025 KRTAP19-3 GTRHP|KAP19.3 keratin associated protein 19-3 protein-coding 180.667-22 chr14 51479293 51479616 + 0.833333 NA intron (NR_051990, intron 2 of 2) L2b|LINE|L2 -9674 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 192.667-18 chr14 62788300 62788761 + 0.833333 NA intron (NM_139318, intron 9 of 10) Tigger1|DNA|TcMar-Tigger 256928 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 169.333-66 chr7 40939469 40939702 + 0.833333 NA Intergenic L1PB3|LINE|L1 40354 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 205.334 chr1 71675194 71676045 + 0.833333 NA intron (NM_173808, intron 4 of 6) intron (NM_173808, intron 4 of 6) 161393 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 186.333-60 chrX 54179124 54179465 + 0.833333 NA intron (NM_198456, intron 1 of 1) intron (NM_198456, intron 1 of 1) 3960 NM_198456 54954 Hs.86045 NM_017848 ENSG00000184083 FAM120C CXorf17|ORF34 family with sequence similarity 120C protein-coding 160.5-4 chr10 56736697 56736922 + 0.833333 NA Intergenic MIR|SINE|MIR -375536 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 181.5-21 chr17 72994026 72994449 + 0.833333 NA intron (NM_001352692, intron 4 of 9) L1ME3B|LINE|L1 98451 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 148.167-63 chr5 59064813 59065060 + 0.833333 NA intron (NM_006203, intron 5 of 14) L1MA10|LINE|L1 -25460 NM_001197222 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 197.333-46 chr5 38758143 38758599 + 0.833333 NA intron (NR_109951, intron 2 of 3) MamTip2|DNA|hAT-Tip100 -38098 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 123.833-20 chr14 69863205 69863377 + 0.833333 NA Intergenic Intergenic -16125 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 123.333-69 chr22 43367017 43367280 + 0.833333 NA Intergenic L1ME4b|LINE|L1 -23776 NM_173050 80274 Hs.133995 NM_152514 ENSG00000159307 SCUBE1 - signal peptide, CUB domain and EGF like domain containing 1 protein-coding 182.833-27 chr2 142726513 142726773 + 0.833333 NA Intergenic LTR33|LTR|ERVL -151021 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 180 chr1 77708801 77709155 + 0.833333 NA intron (NM_015017, intron 22 of 24) FLAM_C|SINE|Alu -25551 NM_001308237 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 215.167-31 chr8 105115775 105116079 + 0.833333 NA Intergenic Intergenic -202511 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 183.5-9 chr11 97594031 97594531 + 0.833333 NA Intergenic L1PB1|LINE|L1 1085856 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 164.5-4 chr1 218088450 218088698 + 0.833333 NA Intergenic Intergenic 45069 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 190.5-38 chr3 117174259 117174720 + 0.833333 NA Intergenic AluY|SINE|Alu 253058 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 202.667-37 chr4 93394615 93394866 + 0.833333 NA intron (NM_001286838, intron 7 of 14) intron (NM_001286838, intron 7 of 14) -434013 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 175.167-24 chr18 6547922 6548349 + 0.833333 NA intron (NR_120518, intron 2 of 5) L1MC5|LINE|L1 36719 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 166.5-3 chr10 49067102 49067476 + 0.833333 NA intron (NM_001031746, intron 4 of 7) MIR|SINE|MIR 48233 NM_001031746 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 198.167-34 chr8 85498156 85498494 + 0.833333 NA Intergenic L1PB1|LINE|L1 -33410 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 295.333-6 chr16 85262776 85263482 + 0.833333 NA Intergenic Intergenic -19829 NR_038859 197196 Hs.679002 NM_153238 ENSG00000179219 LINC00311 NCRNA00311|TMEM148 long intergenic non-protein coding RNA 311 ncRNA 157.833-3 chr1 115905470 115905794 + 0.833333 NA Intergenic Intergenic -13744 NR_125969 101928995 Hs.559119 NR_125969 ENSG00000228127 LINC01649 - long intergenic non-protein coding RNA 1649 ncRNA 208.5-30 chr3 71695407 71695833 + 0.833333 NA intron (NM_173359, intron 5 of 7) intron (NM_173359, intron 5 of 7) 29782 NM_001134651 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 205.667-21 chr15 73042827 73043139 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -9480 NM_002499 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 117.5-72 chr8 87581764 87582001 + 0.833333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 292133 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 196.667-47 chr5 156350905 156351370 + 0.833333 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 23973 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 176.5-18 chr13 81916127 81916541 + 0.833333 NA Intergenic Intergenic -689351 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 177-7 chr10 34313701 34314008 + 0.833333 NA intron (NM_001184794, intron 19 of 19) intron (NM_001184794, intron 19 of 19) 501442 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 206-9 chr14 44937674 44938330 + 0.833333 NA intron (NM_017658, intron 2 of 4) MSTD|LTR|ERVL-MaLR 23483 NM_001308112 54813 Hs.550906 NM_017658 ENSG00000179454 KLHL28 BTBD5 kelch like family member 28 protein-coding 243 chr1 63967914 63968452 + 0.833333 NA intron (NM_005012, intron 1 of 8) L1M5|LINE|L1 144022 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 116-23 chr14 53487326 53487537 + 0.833333 NA Intergenic L1MA9|LINE|L1 334077 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 213.833-15 chr2 95004057 95004610 + 0.833333 NA Intergenic Intergenic -21322 NM_022440 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 173-17 chr14 63457710 63457965 + 0.833333 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 50401 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 134-87 chr5 37507640 37507864 + 0.833333 NA intron (NM_001345998, intron 8 of 17) L1MD|LINE|L1 128434 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 146-46 chr22 27826317 27826606 + 0.833333 NA Intergenic MIRb|SINE|MIR -24705 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 189.667-5 chr10 33175440 33175899 + 0.833333 NA Intergenic MER5A1|DNA|hAT-Charlie -58862 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 121.667-93 chr8 17948961 17949172 + 0.833333 NA intron (NM_001352648, intron 9 of 39) intron (NM_001352648, intron 9 of 39) 26078 NM_001352632 5108 Hs.491148 NM_006197 ENSG00000078674 PCM1 PTC4|RET/PCM-1 pericentriolar material 1 protein-coding 136-82 chr8 126410813 126411186 + 0.833333 NA Intergenic Intergenic 85504 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 213-31 chr9 36753375 36753683 + 0.833333 NA Intergenic L1MC1|LINE|L1 70070 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 157-56 chr3 53673483 53673697 + 0.833333 NA intron (NM_001128840, intron 8 of 47) intron (NM_001128840, intron 8 of 47) 172829 NM_018397 55349 Hs.126688 NM_018397 ENSG00000016391 CHDH - choline dehydrogenase protein-coding 198.667-54 chr8 71209296 71209562 + 0.833333 NA intron (NM_001370336, intron 17 of 17) intron (NM_001370336, intron 17 of 17) 147277 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 215.167 chr1 55909133 55909509 + 0.833333 NA Intergenic Intergenic 35642 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 144.667-98 chr8 121797783 121798017 + 0.833333 NA Intergenic Intergenic -156460 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 259.167-9 chr3 105243008 105243691 + 0.833333 NA Intergenic Intergenic -123364 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 164.333-7 chr1 228848970 228849403 + 0.833333 NA Intergenic Intergenic 113707 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 229-25 chr21 31706706 31707077 + 0.833333 NA intron (NM_020706, intron 1 of 19) intron (NM_020706, intron 1 of 19) 25227 NM_020706 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 126.667-96 chr8 38518652 38518880 + 0.833333 NA intron (NM_207412, intron 1 of 2) AluSx|SINE|Alu 9896 NM_001369353 389649 Hs.546586 NM_207412 ENSG00000196166 C8orf86 - chromosome 8 open reading frame 86 protein-coding 219.667-9 chr15 65070100 65070647 + 0.833333 NA Intergenic Intergenic -2382 NM_016563 51285 Hs.27018 NM_016563 ENSG00000103710 RASL12 RIS RAS like family 12 protein-coding 146.667-98 chr9 102551029 102551252 + 0.833333 NA intron (NR_103830, intron 1 of 4) intron (NR_103830, intron 1 of 4) 31503 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 210-14 chr2 28077033 28077384 + 0.833333 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 80841 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 152.333-21 chr15 63071426 63071659 + 0.833333 NA 3' UTR (NM_001018007, exon 9 of 9) 3' UTR (NM_001018007, exon 9 of 9) -22155 NR_147233 111064646 Hs.602995 NR_147233 TPM1-AS TPM1-AS1 TPM1 antisense RNA ncRNA 245.667-12 chr16 73895430 73895929 + 0.833333 NA Intergenic AluSc|SINE|Alu 319842 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 191.5-5 chr1 244332009 244332395 + 0.833333 NA Intergenic L1ME1|LINE|L1 -20433 NM_001276348 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 178.333-15 chr14 45879099 45879355 + 0.833333 NA Intergenic Intergenic -163625 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 144.667-87 chr7 2829257 2829504 + 0.833333 NA intron (NM_001293092, intron 1 of 2) intron (NM_001293092, intron 1 of 2) -14150 NM_001282441 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 145.5-62 chr5 35369024 35369276 + 0.833333 NA Intergenic L2c|LINE|L2 -138663 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 184.333-16 chr15 97663732 97664023 + 0.833333 NA Intergenic L1ME2|LINE|L1 -103179 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 131.667-82 chr3 114608672 114608905 + 0.833333 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) 15418 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 149.333-5 chr1 97957597 97957930 + 0.833333 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat -16023 NR_146275 109729128 NR_146275 LINC01930 - long intergenic non-protein coding RNA 1930 ncRNA 226.167-24 chr6 130955593 130956055 + 0.833333 NA intron (NM_001252660, intron 2 of 16) intron (NM_001252660, intron 2 of 16) 14659 NM_001350299 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 172.833-35 chr3 182567273 182567654 + 0.833333 NA Intergenic Intergenic -60339 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 139-19 chr15 98039315 98039732 + 0.833333 NA Intergenic Intergenic 36485 NR_146565 105371008 NR_146563 LINC02251 - long intergenic non-protein coding RNA 2251 ncRNA 141.167-19 chr12 47906413 47906778 + 0.833333 NA Intergenic Intergenic -1564 NM_001364085 7421 Hs.524368 NM_000376 ENSG00000111424 VDR NR1I1|PPP1R163 vitamin D receptor protein-coding 175.333-61 chr7 97703273 97703554 + 0.833333 NA Intergenic L1PA12|LINE|L1 -28673 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 124.333-93 chr7 36113450 36113670 + 0.833333 NA Intergenic L1ME3D|LINE|L1 18250 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 147-43 chr2 221386571 221387043 + 0.833333 NA Intergenic Intergenic 185497 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 144.333-74 chr6 52102773 52103262 + 0.833333 NA Intergenic Intergenic -15404 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 157.167-56 chr7 34068969 34069404 + 0.833333 NA intron (NM_133468, intron 12 of 15) intron (NM_133468, intron 12 of 15) 163647 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 318.5 chr1 188118127 188118605 + 0.833333 NA Intergenic MIR|SINE|MIR 674738 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 165.833-48 chr5 32193705 32194051 + 0.833333 NA Intergenic Intergenic -19559 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 194.667-23 chr2 24311897 24312298 + 0.833333 NA intron (NM_001348182, intron 5 of 38) intron (NM_001348182, intron 5 of 38) 48439 NM_147152 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 211-25 chr2 189746055 189746379 + 0.833333 NA TTS (NM_001354347) TTS (NM_001354347) -16563 NR_102429 101409258 Hs.738558 NR_102429 OSGEPL1-AS1 - OSGEPL1 antisense RNA 1 ncRNA 187.333-76 chr7 26051800 26052043 + 0.833333 NA Intergenic L1MA5|LINE|L1 -100277 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 199.333-37 chr6 162097649 162098130 + 0.833333 NA intron (NM_004562, intron 4 of 11) Charlie7|DNA|hAT-Charlie 626912 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 138-28 chr13 83429384 83429859 + 0.833333 NA Intergenic Intergenic 452772 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 122.167-31 chr19 13295219 13295381 + 0.833333 NA intron (NM_023035, intron 19 of 46) MER20B|DNA|hAT-Charlie 144889 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 153.5-26 chr17 70070178 70070376 + 0.833333 NA Intergenic GA-rich|Low_complexity|Low_complexity -4948 NM_018658 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 183.667-78 chr8 36579733 36580046 + 0.833333 NA Intergenic Intergenic -204485 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 215.167-5 chr10 52199867 52200220 + 0.833333 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 114085 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 174.333-25 chr18 5028419 5028644 + 0.833333 NA Intergenic Intergenic -52651 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 259-12 chr3 6886389 6886870 + 0.833333 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) 7388 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 164.333-59 chr5 92496837 92497254 + 0.833333 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR 1074298 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 350.5-3 chr3 178256436 178256872 + 0.833333 NA Intergenic L1ME1|LINE|L1 -162547 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 246.167-21 chr4 30812243 30812877 + 0.833333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 92191 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 157.333-46 chr3 2114182 2114379 + 0.833333 NA intron (NR_046555, intron 2 of 2) AluJb|SINE|Alu 15414 NM_175607 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 174.833-37 chr5 15446667 15447051 + 0.833333 NA Intergenic LTR88c|LTR|Gypsy? -53321 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 145.333-43 chr20 33431103 33431355 + 0.833333 NA intron (NM_003098, intron 2 of 7) AluJb|SINE|Alu 12663 NM_003098 6640 Hs.31121 NM_003098 ENSG00000101400 SNTA1 LQT12|SNT1|TACIP1|dJ1187J4.5 syntrophin alpha 1 protein-coding 163.5-37 chr20 42365598 42365916 + 0.833333 NA intron (NM_133170, intron 9 of 31) MER30|DNA|hAT-Charlie -319726 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 187-32 chr4 183470986 183471284 + 0.833333 NA Intergenic Charlie6|DNA|hAT-Charlie 26499 NM_001317343 55602 Hs.592508 NM_017632 ENSG00000168564 CDKN2AIP CARF CDKN2A interacting protein protein-coding 154-71 chr7 85621092 85621455 + 0.833333 NA Intergenic Intergenic 200151 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 199.5-9 chr11 82441480 82441749 + 0.833333 NA Intergenic L2|LINE|L2 -37701 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 177.333-20 chr14 64898763 64899140 + 0.833333 NA Intergenic Intergenic -15410 NM_001202559 100529261 Hs.325531 NM_001202558 ENSG00000125954 CHURC1-FNTB FNTB|FTase-beta CHURC1-FNTB readthrough protein-coding 179.833-26 chr4 107131227 107131481 + 0.833333 NA Intergenic Intergenic -95041 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 236.5-23 chr4 100164878 100165288 + 0.833333 NA Intergenic Intergenic -24950 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 265.5-14 chrX 84362142 84362604 + 0.833333 NA intron (NM_001177478, intron 4 of 9) MIRc|SINE|MIR -136545 NR_031690 100302191 NR_031690 ENSG00000221494 MIR548I4 MIR548I-4|MIRN548I4|hsa-mir-548i-4 microRNA 548i-4 ncRNA 183.333-8 chr10 52355480 52355874 + 0.833333 NA Intergenic Intergenic 41396 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 177.333-26 chr17 59452356 59452655 + 0.833333 NA intron (NR_110813, intron 2 of 2) AluJb|SINE|Alu 74352 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 128-72 chr5 87313662 87313970 + 0.833333 NA intron (NM_001364075, intron 8 of 8) L2b|LINE|L2 9812 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 132.5-53 chr2 219064573 219064800 + 0.833333 NA Intergenic Intergenic -3765 NM_002181 3549 Hs.654504 NM_002181 ENSG00000163501 IHH BDA1|HHG2 Indian hedgehog signaling molecule protein-coding 127.667-48 chr2 174127843 174128060 + 0.833333 NA intron (NM_001011708, intron 4 of 9) intron (NM_001011708, intron 4 of 9) 102671 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 188 chr1 23958005 23958284 + 0.833333 NA Intergenic Intergenic -1684 NM_017761 55629 Hs.7862 NM_017761 ENSG00000189266 PNRC2 - proline rich nuclear receptor coactivator 2 protein-coding 233.167-2 chr1 111830989 111831366 + 0.833333 NA intron (NM_172198, intron 2 of 6) L2c|LINE|L2 25728 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 157.5-66 chr8 59115481 59115784 + 0.833333 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 3515 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 233-14 chr2 78547967 78548441 + 0.833333 NA intron (NR_136312, intron 1 of 3) L2a|LINE|L2 2673 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 113.333-17 chr10 66138144 66138391 + 0.833333 NA intron (NM_001127384, intron 13 of 17) MIRb|SINE|MIR 566842 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 167-49 chr5 158836823 158837334 + 0.833333 NA intron (NM_001324107, intron 7 of 15) intron (NM_001324107, intron 7 of 15) 260878 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 197.667-49 chr6 151790910 151791233 + 0.833333 NA intron (NM_001122742, intron 2 of 9) intron (NM_001122742, intron 2 of 9) -14602 NM_001291241 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 129.833-45 chr3 53475699 53475953 + 0.833333 NA Intergenic L1ME2z|LINE|L1 -18785 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 137.833-53 chr8 119039371 119039566 + 0.833333 NA intron (NM_001324095, intron 3 of 7) L2b|LINE|L2 -27779 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 131-76 chr9 85108793 85108973 + 0.833333 NA Intergenic MER63A|DNA|hAT-Blackjack 402982 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 223.667-24 chr5 94982167 94982572 + 0.833333 NA intron (NM_001297777, intron 2 of 19) intron (NM_001297777, intron 2 of 19) 99497 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 169.167-32 chr4 35619422 35619671 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 624393 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 341.5 chr1 97926120 97926665 + 0.833333 NA Intergenic L2b|LINE|L2 -5333 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 122-40 chr2 150549006 150549215 + 0.833333 NA Intergenic Intergenic 23111 NR_110241 101929260 Hs.732324 NR_110241 ENSG00000236049 LINC01920 - long intergenic non-protein coding RNA 1920 ncRNA 299.667-13 chr5 127280825 127281329 + 0.833333 NA Intergenic MLT1N2|LTR|ERVL-MaLR -9687 NM_001308119 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 121.333-78 chr4 137094398 137094670 + 0.833333 NA intron (NR_149105, intron 1 of 3) L2a|LINE|L2 -99222 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 219-23 chr5 42381237 42381648 + 0.833333 NA Intergenic Intergenic -41997 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 175.333-70 chrX 52391504 52391889 + 0.833333 NA Intergenic Intergenic 22675 NM_130777 9502 Hs.409726 NM_130777 ENSG00000155622 XAGE2 CT12.2|GAGED3|XAGE-2|XAGE2B X antigen family member 2 protein-coding 141.667-9 chr10 64945853 64946167 + 0.833333 NA Intergenic Intergenic -21492 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 141.5-9 chr10 61905758 61906110 + 0.833333 NA intron (NM_032199, intron 2 of 9) intron (NM_032199, intron 2 of 9) 4235 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 138.667-35 chr15 92120059 92120389 + 0.833333 NA intron (NR_135775, intron 4 of 10) intron (NR_135775, intron 4 of 10) 265920 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 273.167-12 chr2 201384301 201384982 + 0.833333 NA intron (NM_015049, intron 14 of 15) Charlie1a|DNA|hAT-Charlie -27243 NM_139163 130540 Hs.107944 NM_139163 ENSG00000155749 FLACC1 ALS2CR12 flagellum associated containing coiled-coil domains 1 protein-coding 167.833-23 chr16 84502902 84503200 + 0.833333 NA intron (NM_020947, intron 1 of 7) MER31A|LTR|ERV1 1608 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 MEAK7 KIAA1609|TLDC1|mEAK-7 MTOR associated protein, eak-7 homolog protein-coding 218.5-12 chr15 56297000 56297317 + 0.833333 NA Intergenic Intergenic -52076 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 316.167-4 chr4 106613142 106613758 + 0.833333 NA Intergenic Intergenic 179826 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 276-5 chr10 54821725 54822212 + 0.833333 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) -20677 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 217.667-12 chr15 64590880 64591265 + 0.833333 NA intron (NM_015042, intron 1 of 8) AluJr4|SINE|Alu 91652 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 129-18 chr11 31310821 31311082 + 0.833333 NA intron (NM_181807, intron 3 of 8) intron (NM_181807, intron 3 of 8) 58788 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 169.833-17 chr19 9895309 9895556 + 0.833333 NA intron (NM_058164, intron 1 of 5) AluJb|SINE|Alu 18369 NM_001304347 93145 Hs.169743 NM_058164 ENSG00000105088 OLFM2 NOE2|NOELIN2|NOELIN2_V1|OlfC olfactomedin 2 protein-coding 131.167-61 chr5 42199077 42199499 + 0.833333 NA Intergenic L1ME3B|LINE|L1 -23943 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 126.333-42 chr16 85333537 85333789 + 0.833333 NA Intergenic MIR|SINE|MIR -27338 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 199-18 chr3 191003155 191003452 + 0.833333 NA Intergenic Intergenic 125373 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 131.5-29 chr17 18313358 18313534 + 0.833333 NA intron (NM_004618, intron 1 of 18) intron (NM_004618, intron 1 of 18) 1548 NM_001320759 7156 Hs.592115 NM_004618 ENSG00000177302 TOP3A MGRISCE2|PEOB5|TOP3|ZGRF7 DNA topoisomerase III alpha protein-coding 153.833-7 chr10 8167036 8167330 + 0.833333 NA Intergenic L1MEd|LINE|L1 101122 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 246.667-18 chr4 126568153 126568580 + 0.833333 NA Intergenic Intergenic 1061107 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 144-27 chr18 56021548 56021919 + 0.833333 NA intron (NR_148972, intron 8 of 8) intron (NR_148972, intron 8 of 8) -20545 NR_146511 102724698 NR_146510 ENSG00000267057 LINC01905 - long intergenic non-protein coding RNA 1905 ncRNA 268.833-5 chr11 50684385 50684760 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 275425 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 297.5-8 chr3 185891716 185892235 + 0.833333 NA Intergenic Intergenic 46039 NM_004593 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog protein-coding 171.333-54 chr5 17329854 17330088 + 0.833333 NA Intergenic Intergenic 57339 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 179.333-27 chr2 42722803 42723042 + 0.833333 NA exon (NM_001282755, exon 17 of 18) exon (NM_001282755, exon 17 of 18) 41339 NM_148962 165140 Hs.168439 NM_148962 ENSG00000162881 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid receptor 1 protein-coding 211.5-3 chr10 28816404 28816764 + 0.833333 NA Intergenic L1ME3G|LINE|L1 -20534 NR_038374 100507605 Hs.119207 NR_038374 ENSG00000235824 LINC00837 - long intergenic non-protein coding RNA 837 ncRNA 170.5-21 chr15 97004785 97005088 + 0.833333 NA Intergenic Intergenic 221501 NR_158223 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 146.833-16 chr14 73500523 73500808 + 0.833333 NA exon (NM_203309, exon 11 of 17) exon (NM_203309, exon 11 of 17) 9732 NM_024644 79697 Hs.509916 NM_024644 ENSG00000170468 RIOX1 C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66 ribosomal oxygenase 1 protein-coding 225.833-18 chr7 51932372 51932677 + 0.833333 NA Intergenic L1MA8|LINE|L1 -539268 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 198.833-18 chr20 39665778 39666188 + 0.833333 NA Intergenic UCON7|DNA?|DNA? -338478 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 193.167-14 chr11 90135456 90135739 + 0.833333 NA exon (NM_005467, exon 2 of 19).2 exon (NM_005467, exon 2 of 19).2 934 NM_005467 10003 Hs.112482 NM_005467 ENSG00000077616 NAALAD2 GCPIII|GPCIII|NAADALASE2|NAALADASE2 N-acetylated alpha-linked acidic dipeptidase 2 protein-coding 113.667-104 chr5 118345338 118345583 + 0.833333 NA Intergenic Intergenic 62886 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 185.667-41 chr5 86520524 86520857 + 0.833333 NA Intergenic L1MA3|LINE|L1 -97251 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 117.667-57 chr2 5378280 5378437 + 0.833333 NA Intergenic Intergenic 312760 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 123.333-63 chr2 206890401 206890695 + 0.833333 NA Intergenic Intergenic -48970 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 132.833-12 chr10 124756133 124756403 + 0.833333 NA Intergenic Intergenic -11890 NM_014661 9679 Hs.129195 NM_014661 ENSG00000189319 FAM53B KIAA0140|bA12J10.2|smp family with sequence similarity 53 member B protein-coding 184.333-13 chr14 89135387 89135738 + 0.833333 NA Intergenic L1MEc|LINE|L1 281671 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 181.167-31 chr8 82932675 82932993 + 0.833333 NA intron (NR_134295, intron 2 of 3) intron (NR_134295, intron 2 of 3) 20730 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 156-32 chr15 40212721 40213038 + 0.833333 NA intron (NM_001211, intron 19 of 22) L1MC5|LINE|L1 -4549 NM_001128628 106821730 Hs.732375 NM_001128628 ENSG00000259288 BUB1B-PAK6 PAK-5|PAK-6|PAK5|PAK6 BUB1B-PAK6 readthrough protein-coding 167.5-25 chr14 70703826 70704188 + 0.833333 NA intron (NR_125769, intron 3 of 3) MLT1A|LTR|ERVL-MaLR 5309 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 318-4 chr14 65049769 65050628 + 0.833333 NA intron (NM_002028, intron 9 of 11) L1ME4c|LINE|L1 5510 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 147.333-27 chr14 103968145 103968370 + 0.833333 NA intron (NM_153046, intron 5 of 35) intron (NM_153046, intron 5 of 35) -25728 NM_001257268 647286 Hs.632325 NM_001257268 ENSG00000227729 RD3L TDRD9-AS1|TDRD9AS1 retinal degeneration 3 like protein-coding 136.667-97 chr7 103905752 103906073 + 0.833333 NA intron (NM_005045, intron 2 of 64) intron (NM_005045, intron 2 of 64) 83604 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 199.5-8 chr11 64336691 64337071 + 0.833333 NA Intergenic AluSp|SINE|Alu -3323 NM_032251 283234 Hs.98564 NM_032251 ENSG00000168071 CCDC88B BRLZ|CCDC88|HKRP3|gipie coiled-coil domain containing 88B protein-coding 143.167-81 chr9 71896732 71896932 + 0.833333 NA intron (NM_001025780, intron 1 of 3) intron (NM_001025780, intron 1 of 3) 14413 NM_016014 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 196.833-3 chr1 98186887 98187147 + 0.833333 NA Intergenic Intergenic -23694 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 162-23 chr14 42340056 42340362 + 0.833333 NA Intergenic Intergenic 733353 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 209.167-34 chr9 132269053 132269477 + 0.833333 NA intron (NM_001351527, intron 25 of 25) intron (NM_001351527, intron 25 of 25) 85591 NM_001351527 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 134.5-78 chrX 78503094 78503308 + 0.833333 NA Intergenic L1M1|LINE|L1 156127 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 204.5-44 chr8 139976244 139976522 + 0.833333 NA intron (NM_001160372, intron 19 of 22) L1MC|LINE|L1 124152 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 149-51 chr22 50250134 50250410 + 0.833333 NA intron (NM_032019, intron 3 of 19) intron (NM_032019, intron 3 of 19) 993 NM_001159286 83933 Hs.26593 NM_032019 ENSG00000100429 HDAC10 HD10 histone deacetylase 10 protein-coding 220.333-11 chr16 64468563 64468972 + 0.833333 NA Intergenic MER113|DNA|hAT-Charlie 653296 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 249.667-2 chr1 91790043 91790395 + 0.833333 NA intron (NR_036634, intron 4 of 17) Tigger3a|DNA|TcMar-Tigger 95932 NM_001195683 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 116.667-34 chr14 64987988 64988198 + 0.833333 NA intron (NM_002028, intron 1 of 11) intron (NM_002028, intron 1 of 11) 1198 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 177.833-5 chr12 118327677 118328295 + 0.833333 NA intron (NM_001346490, intron 1 of 21) intron (NM_001346490, intron 1 of 21) 31719 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 331.167-2 chr18 652221 652943 + 0.833333 NA intron (NM_001012716, intron 1 of 1) MER44B|DNA|TcMar-Tigger -5071 NM_001071 7298 Hs.369762 NM_001071 ENSG00000176890 TYMS HST422|TMS|TS thymidylate synthetase protein-coding 126.5-27 chr14 63073384 63073577 + 0.833333 NA Intergenic L2a|LINE|L2 -28022 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 170.333-56 chr4 121725599 121725947 + 0.833333 NA Intergenic Intergenic -28793 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 234.167-15 chr5 61344854 61345380 + 0.833333 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 12859 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 243.5-31 chr9 33175575 33176438 + 0.833333 NA intron (NR_108108, intron 1 of 3) MLT1G1-int|LTR|ERVL-MaLR 8147 NR_108108 101929639 Hs.545818 NR_108108 ENSG00000233554 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 116.5-76 chr6 93048031 93048304 + 0.833333 NA Intergenic Intergenic 371392 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 190.667-29 chr20 51680319 51680857 + 0.833333 NA intron (NM_006045, intron 9 of 27) intron (NM_006045, intron 9 of 27) 87802 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 124.333-37 chr17 42619310 42619782 + 0.833333 NA Intergenic AluSx1|SINE|Alu 9863 NM_001070 7283 Hs.279669 NM_001070 ENSG00000131462 TUBG1 CDCBM4|GCP-1|TUBG|TUBGCP1 tubulin gamma 1 protein-coding 115.667-14 chr10 99434144 99434544 + 0.833333 NA Intergenic Intergenic -3720 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 236-4 chr10 129796515 129796882 + 0.833333 NA Intergenic Intergenic 46676 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 175.833-38 chr6 145296404 145296630 + 0.833333 NA Intergenic MER88|LTR|ERVL 390360 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 135.333-36 chr19 28631906 28632365 + 0.833333 NA intron (NR_110759, intron 5 of 9) L1PA15-16|LINE|L1 25447 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 169.667-22 chr14 66868253 66868498 + 0.833333 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) -321065 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 187.167-44 chr8 90916575 90916929 + 0.833333 NA intron (NM_022351, intron 5 of 12) intron (NM_022351, intron 5 of 12) 68325 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 189-49 chr8 68298867 68299117 + 0.833333 NA Intergenic Intergenic -31381 NM_001349478 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 177-11 chr11 32099548 32100055 + 0.833333 NA intron (NM_002901, intron 3 of 5) intron (NM_002901, intron 3 of 5) 8727 NM_002901 5954 Hs.97887 NM_002901 ENSG00000049449 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1 protein-coding 328.5-11 chr8 74235941 74236656 + 0.833333 NA 3' UTR (NM_001317830, exon 6 of 6) 3' UTR (NM_001317830, exon 6 of 6) 85063 NM_001363050 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 285.334-6 chr5 93989136 93989894 + 0.833333 NA intron (NR_028080, intron 3 of 8) Charlie4a|DNA|hAT-Charlie 122148 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 286.5-5 chr17 63626662 63627346 + 0.833333 NA intron (NM_203351, intron 1 of 16) intron (NM_203351, intron 1 of 16) 4587 NM_001330431 4215 Hs.29282 NM_002401 ENSG00000198909 MAP3K3 MAPKKK3|MEKK3 mitogen-activated protein kinase kinase kinase 3 protein-coding 233.5-27 chr8 110102735 110103041 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR -127117 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 139.333-64 chr3 177057469 177057872 + 0.833333 NA intron (NM_001321195, intron 2 of 14) intron (NM_001321195, intron 2 of 14) 138808 NM_001321195 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 183.667-58 chr4 128747236 128747611 + 0.833333 NA Intergenic MER92-int|LTR|ERV1 -62277 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 123.333-88 chr5 141129776 141130074 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -5281 NM_015669 26167 Hs.119693 NM_015669 ENSG00000113209 PCDHB5 PCDH-BETA5 protocadherin beta 5 protein-coding 147.833-56 chr5 104210768 104210993 + 0.833333 NA Intergenic Intergenic -648091 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 222.833-8 chr17 65907487 65907882 + 0.833333 NA intron (NM_001353129, intron 19 of 26) intron (NM_001353129, intron 19 of 26) -81141 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 324.333-7 chr9 25887321 25888059 + 0.833333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 107634 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 120.333-48 chr18 517028 517292 + 0.833333 NA Intergenic Tigger3|DNA|TcMar-Tigger -1866 NR_136505 105376854 NR_136505 ENSG00000264265 LINC01925 - long intergenic non-protein coding RNA 1925 ncRNA 152.5-24 chr2 17437264 17437457 + 0.833333 NA Intergenic L1M5|LINE|L1 81080 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 173.667-23 chr17 67228022 67228273 + 0.833333 NA intron (NM_001330447, intron 3 of 32) intron (NM_001330447, intron 3 of 32) -16629 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 163.833-25 chr16 68342111 68342401 + 0.833333 NA intron (NR_147058, intron 9 of 18) AluSz|SINE|Alu 31142 NM_001290018 54496 Hs.640229 NM_019023 ENSG00000132600 PRMT7 SBIDDS protein arginine methyltransferase 7 protein-coding 220.667-17 chr2 109039547 109039921 + 0.833333 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat -50514 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 170-67 chr7 13477616 13477891 + 0.833333 NA Intergenic Intergenic 508761 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 136.5-49 chr2 109238048 109238346 + 0.833333 NA intron (NM_001099289, intron 1 of 9) AluJb|SINE|Alu 75428 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 174-50 chr5 177543268 177543560 + 0.833333 NA intron (NM_001190946, intron 1 of 8) intron (NM_001190946, intron 1 of 8) 10681 NM_001366499 54540 Hs.484289 NM_019057 ENSG00000146067 FAM193B IRIZIO family with sequence similarity 193 member B protein-coding 126.167-65 chr4 65210586 65210748 + 0.833333 NA Intergenic L1PA16|LINE|L1 -206167 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 194.5-13 chr18 76057513 76057822 + 0.833333 NA Intergenic Intergenic -65331 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 329.667-10 chr8 108445827 108446532 + 0.833333 NA 5' UTR (NM_001329495, exon 2 of 12) 5' UTR (NM_001329495, exon 2 of 12) 2555 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 157.833-12 chr11 41168109 41168304 + 0.833333 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 291430 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 206.667-44 chr6 77023125 77023594 + 0.833333 NA Intergenic Intergenic -429736 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 185.833-31 chr6 45260825 45261263 + 0.833333 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -63274 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 115.5-85 chr5 171607221 171607509 + 0.833333 NA Intergenic L1MC4|LINE|L1 -178507 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 220.167-29 chr8 72412017 72412405 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR -125014 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 169.167-27 chr2 205249407 205249674 + 0.833333 NA intron (NM_057177, intron 16 of 21) intron (NM_057177, intron 16 of 21) -432960 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 190.333-31 chr2 32599899 32600263 + 0.833333 NA intron (NM_016252, intron 70 of 73) intron (NM_016252, intron 70 of 73) -25263 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 184.5-39 chr5 66609574 66609823 + 0.833333 NA intron (NM_001290228, intron 1 of 4) (T)n|Simple_repeat|Simple_repeat 13305 NM_001290228 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 169.833-42 chrX 39116665 39116968 + 0.833333 NA Intergenic Intergenic 210546 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 169.5-62 chr6 83695680 83696211 + 0.833333 NA intron (NM_001256717, intron 2 of 29) intron (NM_001256717, intron 2 of 29) 12614 NM_001363677 9892 Hs.368046 NM_014841 ENSG00000065609 SNAP91 AP180|CALM synaptosome associated protein 91 protein-coding 187.667-56 chr8 77805235 77805542 + 0.833333 NA Intergenic Charlie3|DNA|hAT-Charlie 354691 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 210.833-13 chr18 68746170 68746791 + 0.833333 NA intron (NM_001093729, intron 3 of 9) intron (NM_001093729, intron 3 of 9) 31264 NM_001093729 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 164.667-33 chr18 3271157 3271406 + 0.833333 NA intron (NM_001144945, intron 1 of 3) intron (NM_001144945, intron 1 of 3) 8562 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 178.333-47 chr7 102823722 102824051 + 0.833333 NA intron (NR_105043, intron 18 of 20) intron (NR_105043, intron 18 of 20) 74887 NR_146984 222234 Hs.202543 NM_147194 ENSG00000222011 FAM185A - family with sequence similarity 185 member A protein-coding 131-22 chr15 83408051 83408367 + 0.833333 NA Intergenic Intergenic -39019 NR_125370 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 223.667-7 chr14 66799193 66799553 + 0.833333 NA intron (NM_001024218, intron 3 of 21) L1MA2|LINE|L1 291966 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 116.833-37 chr3 132552215 132552522 + 0.833333 NA Intergenic MER4A1_|LTR|ERV1 -44902 NM_016557 51554 Hs.310512 NM_016557 ENSG00000129048 ACKR4 CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1 atypical chemokine receptor 4 protein-coding 153-45 chr5 102771282 102771566 + 0.833333 NA intron (NR_157231, intron 1 of 14) intron (NR_157231, intron 1 of 14) 16119 NR_157231 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 209.167-7 chr12 14079005 14079310 + 0.833333 NA Intergenic L1M5|LINE|L1 -98801 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 218-16 chr15 57804521 57804916 + 0.833333 NA Intergenic L1M5|LINE|L1 98004 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 135.667-31 chr14 25301279 25301690 + 0.833333 NA Intergenic Intergenic -251187 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 128.167-14 chr11 105060991 105061279 + 0.833333 NA Intergenic L1PA16|LINE|L1 10395 NR_131905 440067 Hs.446758 NR_131905 CASP1P2 - caspase 1 pseudogene 2 pseudo 122.333-103 chr7 84737832 84738017 + 0.833333 NA Intergenic Intergenic 205448 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 253.333-24 chr9 28167712 28168223 + 0.833333 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 551338 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 287.5-18 chr8 121851525 121852168 + 0.833333 NA Intergenic Intergenic -210406 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 137.333-107 chr9 1686663 1686960 + 0.833333 NA Intergenic Intergenic -328536 NM_001289397 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 285.833-2 chr1 246668285 246668747 + 0.833333 NA TTS (NM_152609) TTS (NM_152609) -55893 NM_016002 51097 Hs.498397 NM_016002 ENSG00000143653 SCCPDH CGI-49|NET11 saccharopine dehydrogenase (putative) protein-coding 121-45 chr2 42781369 42781570 + 0.833333 NA intron (NM_012205, intron 4 of 9) MER4-int|LTR|ERV1 11114 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 237.5-24 chr6 55055820 55056351 + 0.833333 NA Intergenic L1MEd|LINE|L1 -50375 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 148.667-23 chr15 86309056 86309295 + 0.833333 NA intron (NR_046012, intron 2 of 3) L1M3e|LINE|L1 7793 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 295.667-12 chr8 120075580 120076195 + 0.833333 NA Intergenic AluSz6|SINE|Alu -49215 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 180.833-31 chr3 183505593 183505869 + 0.833333 NA intron (NM_130446, intron 3 of 6) L1MC|LINE|L1 -43004 NR_046687 100874019 NR_046687 ENSG00000242522 KLHL6-AS1 - KLHL6 antisense RNA 1 ncRNA 121.5-32 chr13 105672017 105672167 + 0.833333 NA Intergenic L2c|LINE|L2 -34738 NR_120418 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 171-27 chr2 171880064 171880408 + 0.833333 NA intron (NR_047549, intron 2 of 16) intron (NR_047549, intron 2 of 16) 14008 NM_003705 8604 Hs.470608 NM_003705 ENSG00000115840 SLC25A12 AGC1|ARALAR|EIEE39 solute carrier family 25 member 12 protein-coding 224.667-20 chr21 17057067 17057415 + 0.833333 NA Intergenic Intergenic -381649 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 176.167-22 chr2 185940793 185941093 + 0.833333 NA Intergenic L1MA4A|LINE|L1 -140792 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 144.833-67 chr7 3374993 3375282 + 0.833333 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 73885 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 143.333-18 chr14 42019226 42019580 + 0.833333 NA Intergenic Intergenic 412547 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 135.5-54 chr3 37653595 37653831 + 0.833333 NA intron (NM_002207, intron 16 of 27) intron (NM_002207, intron 16 of 27) 201572 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 156.667-25 chr12 27698564 27698909 + 0.833333 NA Intergenic AluJb|SINE|Alu 2289 NM_001029874 387849 Hs.269836 NM_001029874 ENSG00000174236 REP15 RAB15EP RAB15 effector protein protein-coding 155.833-26 chr2 45101911 45102162 + 0.833333 NA Intergenic Intergenic -92584 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 296.667-17 chr8 46078699 46079263 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 538662 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 156.667-61 chr20 59271944 59272219 + 0.833333 NA Intergenic Intergenic -28530 NM_207032 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 209.5-3 chr11 14022129 14022404 + 0.833333 NA intron (NM_006108, intron 2 of 15) MamRep434|DNA|TcMar-Tigger 59543 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 198.833-9 chr18 1053171 1053411 + 0.833333 NA Intergenic Intergenic -125298 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 197.667-19 chr14 58549407 58549768 + 0.833333 NA TTS (NM_001244191) TTS (NM_001244191) -84481 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 320.167-3 chr20 33226252 33226844 + 0.833333 NA intron (NM_178466, intron 5 of 6) intron (NM_178466, intron 5 of 6) 9196 NM_178466 128861 Hs.360989 NM_178466 ENSG00000131059 BPIFA3 C20orf71|SPLUNC3 BPI fold containing family A member 3 protein-coding 154.333-34 chr18 12865757 12866060 + 0.833333 NA intron (NM_080423, intron 1 of 8) L1MB7|LINE|L1 18329 NM_002828 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 152.333-24 chr16 20044738 20044943 + 0.833333 NA intron (NM_001002911, intron 1 of 1) MIR|SINE|MIR 28938 NM_001002911 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 160.167-52 chr5 11333654 11333966 + 0.833333 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 255107 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 162-53 chr4 167088780 167089127 + 0.833333 NA intron (NM_016950, intron 2 of 11) intron (NM_016950, intron 2 of 11) 145473 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 181.333-40 chr4 34343655 34343930 + 0.833333 NA Intergenic Intergenic -74045 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 270.833-5 chr12 97970837 97971305 + 0.833333 NA Intergenic HAL1|LINE|L1 24377 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 240-13 chr17 53566140 53566450 + 0.833333 NA Intergenic L1MA4A|LINE|L1 -256632 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 122.333-117 chr8 139635955 139636206 + 0.833333 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 67043 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 194.167-16 chr2 117042926 117043295 + 0.833333 NA Intergenic (TATACTA)n|Simple_repeat|Simple_repeat -771581 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 156-39 chr18 69118742 69118983 + 0.833333 NA Intergenic L1PA13|LINE|L1 -282026 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 189.833-14 chr2 16678808 16679067 + 0.833333 NA Intergenic AluSz|SINE|Alu -13103 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 185.333-63 chr8 136860198 136860614 + 0.833333 NA intron (NR_147196, intron 4 of 5) L1MC|LINE|L1 329608 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 132-72 chr5 61292440 61292635 + 0.833333 NA Intergenic Intergenic -27608 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 157-32 chr17 53324611 53324922 + 0.833333 NA Intergenic L1MEi|LINE|L1 339261 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 297.5-14 chr7 127756102 127756624 + 0.833333 NA intron (NM_014390, intron 10 of 23) intron (NM_014390, intron 10 of 23) 104169 NM_014390 27044 Hs.122523 NM_014390 ENSG00000197157 SND1 TDRD11|Tudor-SN|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 168.833-3 chr1 107244550 107244834 + 0.833333 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 96623 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 178.5-20 chr12 30307709 30308011 + 0.833333 NA Intergenic MER4D0|LTR|ERV1 369384 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 160.333-34 chr21 26912881 26913414 + 0.833333 NA Intergenic MLT1H1|LTR|ERVL-MaLR -40814 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 159.5-14 chr13 77844182 77844518 + 0.833333 NA intron (NR_103853, intron 6 of 6) L1ME4c|LINE|L1 25413 NR_103853 100505518 Hs.742215 NR_103853 EDNRB-AS1 - EDNRB antisense RNA 1 ncRNA 219.333-24 chr3 66358669 66359436 + 0.833333 NA intron (NM_001350992, intron 5 of 8) intron (NM_001350992, intron 5 of 8) 138049 NM_001350991 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 169.167-10 chr13 33000962 33001208 + 0.833333 NA Intergenic L1MD1|LINE|L1 -15338 NM_004795 9365 Hs.524953 NM_004795 ENSG00000133116 KL HFTC3 klotho protein-coding 186.5-49 chr4 85462598 85463016 + 0.833333 NA Intergenic Intergenic -12343 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 231.833-19 chr9 119585465 119585985 + 0.833333 NA Intergenic L1M8|LINE|L1 -216290 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 125.5-53 chr3 138981029 138981300 + 0.833333 NA Intergenic Intergenic 25104 NM_001134659 729627 Hs.121314 NM_001134659 ENSG00000206260 PRR23A - proline rich 23A protein-coding 146.167-78 chr9 83680324 83680593 + 0.833333 NA intron (NM_013438, intron 3 of 10) MER21C|LTR|ERVL -27377 NR_135839 105376114 Hs.9589 NR_135839 ENSG00000254473 LOC105376114 - uncharacterized LOC105376114 ncRNA 163.333-43 chr2 118522939 118523221 + 0.833333 NA Intergenic Intergenic 79886 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 146.333-61 chr3 25097196 25097413 + 0.833333 NA intron (NM_001290216, intron 3 of 10) intron (NM_001290216, intron 3 of 10) -243498 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 183.833-17 chr17 73728259 73728523 + 0.833333 NA Intergenic MER5A1|DNA|hAT-Charlie -9463 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 286.333-11 chr6 49531613 49532148 + 0.833333 NA Intergenic Intergenic -18788 NR_146860 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 127.833-32 chr17 61019430 61019651 + 0.833333 NA intron (NM_001320470, intron 16 of 25) intron (NM_001320470, intron 16 of 25) 341689 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 176-46 chr8 51162328 51162751 + 0.833333 NA Intergenic Intergenic 646906 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 171.667-76 chr7 28669850 28670256 + 0.833333 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -16080 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 148.667-32 chr2 8125025 8125319 + 0.833333 NA intron (NR_034135, intron 7 of 8) MIRc|SINE|MIR -148358 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 245.667-13 chr17 63120885 63121291 + 0.833333 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 154853 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 122.333-37 chr15 23911303 23911661 + 0.833333 NA Intergenic MIRb|SINE|MIR -63665 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 231 chr1 50365885 50366259 + 0.833333 NA Intergenic L1MC4|LINE|L1 57371 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 212.333-17 chr2 15601682 15602102 + 0.833333 NA intron (NM_004939, intron 6 of 25) intron (NM_004939, intron 6 of 25) 10024 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 156-35 chr15 94235038 94235429 + 0.833333 NA Intergenic AluSq2|SINE|Alu -62968 NM_001159643 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 269.833-3 chr10 51425513 51425945 + 0.833333 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 126156 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 214.167-10 chr17 74188553 74189099 + 0.833333 NA Intergenic (AAAAT)n|Simple_repeat|Simple_repeat -14852 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 170.167-11 chr12 12991524 12991786 + 0.833333 NA intron (NM_015987, intron 1 of 3) MER112|DNA|hAT-Charlie 8610 NM_015987 50865 Hs.642618 NM_015987 ENSG00000013583 HEBP1 HBP|HEBP heme binding protein 1 protein-coding 235.333-19 chr3 193265442 193265922 + 0.833333 NA intron (NM_020386, intron 3 of 3) intron (NM_020386, intron 3 of 3) 23903 NR_026877 84789 Hs.676481 NM_032703 MGC2889 - uncharacterized protein MGC2889 ncRNA 173.167-19 chr2 40613392 40613976 + 0.833333 NA Intergenic Intergenic -101249 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 190.5-29 chr2 27889380 27889720 + 0.833333 NA TTS (NR_028308) TTS (NR_028308) 837 NM_022128 64080 Hs.11916 NM_022128 ENSG00000171174 RBKS RBSK|RK ribokinase protein-coding 139.333-30 chr12 113949842 113950126 + 0.833333 NA intron (NM_001146698, intron 9 of 24) (TGG)n|Simple_repeat|Simple_repeat 16341 NM_001146699 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 127.167-36 chr15 27395172 27395375 + 0.833333 NA intron (NM_001270873, intron 5 of 5) L1M4|LINE|L1 -233954 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 132.333-77 chr4 115688174 115688415 + 0.833333 NA Intergenic L2a|LINE|L2 -574674 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 174.333-4 chr10 6106297 6106627 + 0.833333 NA intron (NM_032905, intron 5 of 11) intron (NM_032905, intron 5 of 11) 17116 NM_001145547 84991 Hs.498548 NM_032905 ENSG00000134453 RBM17 SPF45 RNA binding motif protein 17 protein-coding 148.833-49 chr5 26531934 26532204 + 0.833333 NA Intergenic Intergenic 506517 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 122.167-60 chr6 96852838 96853014 + 0.833333 NA Intergenic Intergenic -15449 NM_030784 81491 Hs.221364 NM_030784 ENSG00000112218 GPR63 PSP24(beta)|PSP24B G protein-coupled receptor 63 protein-coding 146.833-69 chrX 23631429 23631731 + 0.833333 NA Intergenic MIRc|SINE|MIR -35913 NM_006406 10549 Hs.83383 NM_006406 ENSG00000123131 PRDX4 AOE37-2|AOE372|HEL-S-97n|PRX-4 peroxiredoxin 4 protein-coding 201-16 chr14 49322115 49322572 + 0.833333 NA Intergenic L2b|LINE|L2 264037 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 203.667-28 chr3 106633516 106633855 + 0.833333 NA Intergenic L1PB4|LINE|L1 606953 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 128.833-56 chr3 114264008 114264220 + 0.833333 NA Intergenic L1M1|LINE|L1 -26536 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 168.5-29 chr2 114440690 114440923 + 0.833333 NA Intergenic L1M5|LINE|L1 -1835 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 173-45 chr5 142921341 142921612 + 0.833333 NA intron (NR_146198, intron 10 of 22) intron (NR_146198, intron 10 of 22) -52566 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 242-18 chr5 108973351 108973858 + 0.833333 NA intron (NR_146155, intron 13 of 19) intron (NR_146155, intron 13 of 19) 48998 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 278.333-8 chr2 64737831 64738422 + 0.833333 NA Intergenic L1MC4|LINE|L1 -84213 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 158.667-63 chr4 65381872 65382209 + 0.833333 NA intron (NM_001281767, intron 8 of 16) intron (NM_001281767, intron 8 of 16) 287448 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 185.667-64 chrX 113603834 113604267 + 0.833333 NA Intergenic MER70C|LTR|ERVL 334168 NR_131204 105463123 Hs.550218 NR_131204 XACT - X active specific transcript ncRNA 171-68 chr9 37803912 37804205 + 0.833333 NA intron (NM_024345, intron 1 of 6) intron (NM_024345, intron 1 of 6) 3261 NM_024345 79269 Hs.118394 NM_024345 ENSG00000122741 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 124.5-82 chr9 90409277 90409466 + 0.833333 NA intron (NR_109795, intron 1 of 2) L1MB4|LINE|L1 24118 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 198.5-2 chr10 14853147 14853587 + 0.833333 NA intron (NM_016299, intron 8 of 13) intron (NM_016299, intron 8 of 13) 15061 NR_103464 51182 Hs.534169 NM_016299 ENSG00000187522 HSPA14 HSP70-4|HSP70L1 heat shock protein family A (Hsp70) member 14 protein-coding 188.667-58 chr6 157519304 157519618 + 0.833333 NA intron (NM_024630, intron 1 of 8) intron (NM_024630, intron 1 of 8) -9671 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 217.833-7 chr14 73514906 73515517 + 0.833333 NA intron (NM_001220484, intron 5 of 17) intron (NM_001220484, intron 5 of 17) -21932 NM_001037161 641371 Hs.446685 NM_001037161 ENSG00000184227 ACOT1 ACH2|CTE-1|LACH2 acyl-CoA thioesterase 1 protein-coding 172.5-15 chr11 107319439 107319783 + 0.833333 NA Intergenic L1M1|LINE|L1 138235 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 196.833-21 chr7 93201177 93201490 + 0.833333 NA intron (NM_001346642, intron 4 of 9) L1MEg|LINE|L1 18238 NM_001288810 253012 Hs.443169 NM_198151 ENSG00000188175 HEPACAM2 MIKI HEPACAM family member 2 protein-coding 140-57 chr4 30517925 30518185 + 0.833333 NA Intergenic Intergenic -202314 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 179-26 chr2 115066730 115067098 + 0.833333 NA intron (NM_001178037, intron 1 of 25) L1MA9|LINE|L1 2341 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 187.333-80 chr8 137944784 137945124 + 0.833333 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 138591 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 216.833-22 chr6 137271503 137272001 + 0.833333 NA Intergenic Intergenic -52322 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 146.833-57 chr7 32918906 32919125 + 0.833333 NA intron (NR_003500, intron 4 of 5) AluSq4|SINE|Alu 24155 NR_003500 441212 Hs.648086 NM_001039754 ENSG00000205763 RP9P - RP9 pseudogene pseudo 236.167-3 chr10 17341734 17342019 + 0.833333 NA intron (NM_001004470, intron 4 of 7) AluSx3|SINE|Alu -45060 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 122.5-102 chr8 133846109 133846323 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -40280 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 242.833-11 chr7 2016516 2016892 + 0.833333 NA intron (NM_001013837, intron 12 of 18) intron (NM_001013837, intron 12 of 18) 72348 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 147.833-50 chr4 41391488 41391758 + 0.833333 NA intron (NM_001289122, intron 1 of 25) L1MD3|LINE|L1 30816 NM_001330791 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 215.667-20 chr18 3529431 3529726 + 0.833333 NA intron (NM_001242762, intron 7 of 9) L2c|LINE|L2 63328 NR_110429 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 144.333-14 chr10 27231919 27232149 + 0.833333 NA intron (NM_001301251, intron 2 of 11) intron (NM_001301251, intron 2 of 11) 8452 NM_001301252 91452 Hs.530597 NM_145698 ENSG00000107897 ACBD5 - acyl-CoA binding domain containing 5 protein-coding 184.167-43 chr6 94664587 94664960 + 0.833333 NA Intergenic MER21C|LTR|ERVL 912678 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 165.333-45 chr5 46160689 46161079 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -464504 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 343.833-4 chr19 52382549 52383052 + 0.833333 NA intron (NM_001145434, intron 3 of 3) L1MB5|LINE|L1 12877 NM_001145434 400713 Hs.502314 NM_001145434 ENSG00000221923 ZNF880 - zinc finger protein 880 protein-coding 174.667-67 chr8 105574677 105575007 + 0.833333 NA intron (NM_001362837, intron 4 of 7) intron (NM_001362837, intron 4 of 7) 255299 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 200.5-8 chr13 76084713 76084967 + 0.833333 NA Intergenic L1MA9|LINE|L1 -149708 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 282.667-16 chr7 51708964 51709430 + 0.833333 NA Intergenic L1ME3Cz|LINE|L1 -315941 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 126-2 chr1 34818999 34819252 + 0.833333 NA Intergenic L1MD1|LINE|L1 26126 NM_002060 2701 Hs.296310 NM_002060 ENSG00000187513 GJA4 CX37 gap junction protein alpha 4 protein-coding 145-70 chr5 105628029 105628327 + 0.833333 NA Intergenic L1M5|LINE|L1 528704 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 163.333-79 chr8 126863930 126864215 + 0.833333 NA Intergenic MIRb|SINE|MIR -149082 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 229.833-2 chr1 104438907 104439375 + 0.833333 NA Intergenic AluJb|SINE|Alu 366118 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 275.667-15 chr20 45807692 45808257 + 0.833333 NA intron (NM_052951, intron 10 of 12) intron (NM_052951, intron 10 of 12) -4602 NM_001281741 11065 Hs.93002 NM_007019 ENSG00000175063 UBE2C UBCH10|dJ447F3.2 ubiquitin conjugating enzyme E2 C protein-coding 136.667-44 chr2 115328590 115328945 + 0.833333 NA intron (NM_001321909, intron 2 of 24) intron (NM_001321909, intron 2 of 24) -15048 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 210.5-40 chr5 61210719 61211086 + 0.833333 NA intron (NR_109908, intron 3 of 3) HAL1M8|LINE|L1 -48434 NM_001048249 643155 Hs.508479 NM_001048249 ENSG00000188725 SMIM15 C5orf43 small integral membrane protein 15 protein-coding 269.166 chr20 7909409 7910199 + 0.833333 NA intron (NM_017545, intron 3 of 7) intron (NM_017545, intron 3 of 7) 30654 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 171.5-5 chr10 56461310 56461604 + 0.833333 NA Intergenic AluSz6|SINE|Alu -100184 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 187.5-48 chr8 14645165 14645437 + 0.833333 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 208209 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 310.833-5 chr5 102314983 102315586 + 0.833333 NA Intergenic MLT1E2|LTR|ERVL-MaLR -19000 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 134.667-35 chr16 6163726 6163922 + 0.833333 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 144121 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 145.833-33 chr18 5913002 5913301 + 0.833333 NA Intergenic MER58D|DNA|hAT-Charlie -17197 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 120.667-99 chr6 95459551 95459826 + 0.833333 NA Intergenic (TTTG)n|Simple_repeat|Simple_repeat 117763 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 150.667-29 chr14 61791377 61791756 + 0.833333 NA intron (NM_003082, intron 8 of 9) AluSz|SINE|Alu -20596 NM_001367650 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 173.667-34 chr20 56431335 56431594 + 0.833333 NA intron (NM_001164116, intron 2 of 6) intron (NM_001164116, intron 2 of 6) 19204 NM_020356 57091 Hs.473144 NM_020356 ENSG00000087589 CASS4 C20orf32|CAS4|HEFL|HEPL Cas scaffold protein family member 4 protein-coding 330.167 chr11 55015479 55016079 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -246376 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 190.833-32 chr4 94936279 94936680 + 0.833333 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -59753 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 241.667-19 chr20 49757886 49758316 + 0.833333 NA Intergenic AluJo|SINE|Alu -44223 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 287.5-12 chr3 115600347 115600843 + 0.833333 NA Intergenic Intergenic -22915 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 121-36 chr17 48683622 48683843 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR 38786 NM_032391 84366 Hs.116467 NM_032391 ENSG00000159182 PRAC1 C17orf92|PRAC PRAC1 small nuclear protein protein-coding 221.5-34 chr8 37859420 37859914 + 0.833333 NA 3' UTR (NM_025151, exon 5 of 5) 3' UTR (NM_025151, exon 5 of 5) -9806 NM_018310 55290 Hs.709301 NM_018310 ENSG00000104221 BRF2 BRFU|TFIIIB50 BRF2 RNA polymerase III transcription initiation factor subunit protein-coding 139.833-61 chr5 55254718 55255236 + 0.833333 NA Intergenic Intergenic -21260 NR_125347 10309 Hs.3041 NM_021147 ENSG00000152669 CCNO CCNU|CILD29|UDG2 cyclin O protein-coding 117.833 chr1 52822719 52822938 + 0.833333 NA 3' UTR (NM_024646, exon 14 of 14) 3' UTR (NM_024646, exon 14 of 14) -19932 NM_001307931 440590 Hs.658458 NM_001004339 ENSG00000203995 ZYG11A ZYG11 zyg-11 family member A, cell cycle regulator protein-coding 154.5-25 chr15 66700239 66700534 + 0.833333 NA Intergenic Intergenic -1850 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 170.5-49 chr4 13112343 13112654 + 0.833333 NA Intergenic MADE1|DNA|TcMar-Mariner 371842 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 153.5-51 chr5 12570304 12570618 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR -4396 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 145.333-63 chr5 94206848 94207055 + 0.833333 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -95252 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 120-37 chr14 72546731 72547154 + 0.833333 NA intron (NM_001370281, intron 18 of 18) intron (NM_001370281, intron 18 of 18) 30122 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 136-76 chr7 30781363 30781766 + 0.833333 NA intron (NR_037598, intron 4 of 19) intron (NR_037598, intron 4 of 19) 10147 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 127.667-8 chr10 32052173 32052654 + 0.833333 NA intron (NM_004521, intron 1 of 25) intron (NM_004521, intron 1 of 25) 4012 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 133-51 chr20 14350278 14350598 + 0.833333 NA intron (NM_001351663, intron 3 of 17) L1MA2|LINE|L1 -12771 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 195.667-27 chr3 168969534 168969929 + 0.833333 NA Intergenic Intergenic 67786 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 199-40 chr8 128545266 128545638 + 0.833333 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 19227 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 117-124 chr8 136046268 136046425 + 0.833333 NA Intergenic Intergenic -484452 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 150.333-36 chr13 73277260 73277563 + 0.833333 NA Intergenic L1MB2|LINE|L1 218406 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 132-42 chr2 75948723 75949005 + 0.833333 NA Intergenic Charlie8|DNA|hAT-Charlie -237949 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 264.333-7 chr14 43864570 43865311 + 0.833333 NA Intergenic Intergenic 642343 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 150-44 chr2 205192704 205192994 + 0.833333 NA intron (NM_205863, intron 14 of 21) intron (NM_205863, intron 14 of 21) -489651 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 122-94 chr9 115507698 115507997 + 0.833333 NA Intergenic L1PA16|LINE|L1 236392 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 218 chr1 109667638 109668184 + 0.833333 NA promoter-TSS (NM_001142368) promoter-TSS (NM_001142368) -111 NM_001142368 2946 Hs.279837 NM_000848 ENSG00000213366 GSTM2 GST4|GSTM|GSTM2-2|GTHMUS glutathione S-transferase mu 2 protein-coding 299.833 chr19 41721508 41722035 + 0.833333 NA intron (NM_001308398, intron 8 of 8) intron (NM_001308398, intron 8 of 8) 13145 NM_001308398 1048 Hs.709196 NM_004363 ENSG00000105388 CEACAM5 CD66e|CEA carcinoembryonic antigen related cell adhesion molecule 5 protein-coding 177.667-44 chr2 227999035 227999360 + 0.833333 NA intron (NM_030623, intron 7 of 10) intron (NM_030623, intron 7 of 10) 127566 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 154.167-67 chrX 6091309 6091573 + 0.833333 NA intron (NM_001282145, intron 3 of 6) intron (NM_001282145, intron 3 of 6) -134917 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 213.167-25 chr5 141237819 141238297 + 0.833333 NA TTS (NR_001281) TTS (NR_001281) -2063 NR_001282 84054 Hs.570898 NR_001282 PCDHB19P PCDH-PSI5|PCDHB19 protocadherin beta 19 pseudogene pseudo 163.333-22 chr14 34711160 34711362 + 0.833333 NA non-coding (NR_028130, exon 4 of 4) non-coding (NR_028130, exon 4 of 4) 2556 NM_021914 1073 Hs.180141 NM_021914 ENSG00000165410 CFL2 NEM7 cofilin 2 protein-coding 218.5-27 chr5 92320835 92321298 + 0.833333 NA Intergenic L1MB1|LINE|L1 -937749 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 349-7 chr7 120546682 120547310 + 0.833333 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 273821 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 191.167-39 chr9 72815514 72815793 + 0.833333 NA intron (NM_138691, intron 18 of 23) intron (NM_138691, intron 18 of 23) 58456 NR_121181 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 196.667-36 chr22 43569509 43569862 + 0.833333 NA intron (NM_198856, intron 24 of 29) intron (NM_198856, intron 24 of 29) 53431 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 139.667-35 chr16 83007272 83007532 + 0.833333 NA intron (NM_001220490, intron 2 of 12) MIR|SINE|MIR -17104 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 187.833-5 chr10 14130753 14131221 + 0.833333 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 56703 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 227.833-5 chr15 72043032 72043601 + 0.833333 NA intron (NM_006901, intron 2 of 41) L1ME1|LINE|L1 -70942 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 181.5-51 chr5 160397584 160397916 + 0.833333 NA intron (NM_001303251, intron 1 of 2) L4_A_Mam|LINE|RTE-X 2304 NM_022090 63920 Hs.529464 NM_022090 ENSG00000221886 ZBED8 Buster3|C5orf54 zinc finger BED-type containing 8 protein-coding 135.333-8 chr10 31923944 31924251 + 0.833333 NA intron (NM_001270696, intron 1 of 17) L1M5|LINE|L1 4734 NM_001270696 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 141.333-102 chr9 99523664 99524011 + 0.833333 NA Intergenic Intergenic -148580 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 259.833-13 chr7 82959447 82959862 + 0.833333 NA intron (NM_033026, intron 4 of 24) intron (NM_033026, intron 4 of 24) 203230 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 140.167-4 chr10 62387042 62387433 + 0.833333 NA intron (NM_199451, intron 2 of 7) intron (NM_199451, intron 2 of 7) -12110 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 194-39 chr3 165093092 165093485 + 0.833333 NA Intergenic Intergenic -14792 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 203.833-9 chr16 55562273 55562600 + 0.833333 NA intron (NM_017839, intron 11 of 13) MIRc|SINE|MIR -4248 NM_032330 84290 Hs.660027 NM_032330 ENSG00000256812 CAPNS2 CSS2 calpain small subunit 2 protein-coding 115.833-83 chr9 32096497 32096728 + 0.833333 NA Intergenic Intergenic -287991 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 123.167-55 chr20 49126690 49126907 + 0.833333 NA intron (NM_001319134, intron 5 of 12) L1M5|LINE|L1 61572 NM_017454 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 139.667-20 chr12 12791417 12791675 + 0.833333 NA TTS (NM_001130415) TTS (NM_001130415) 5887 NM_030817 81575 Hs.23388 NM_030817 ENSG00000178878 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 160.167-50 chr4 59107926 59108230 + 0.833333 NA Intergenic L1MD3|LINE|L1 94505 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 132.833-30 chr2 25083130 25083341 + 0.833333 NA intron (NM_001319099, intron 1 of 22) intron (NM_001319099, intron 1 of 22) 40772 NM_001319099 22979 Hs.4892 NM_014971 ENSG00000084710 EFR3B KIAA0953 EFR3 homolog B protein-coding 172.167-21 chr16 72755128 72755447 + 0.833333 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -90317 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 278.5-6 chr14 48152055 48152515 + 0.833333 NA Intergenic Intergenic -357271 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 189-46 chr7 42545536 42545833 + 0.833333 NA Intergenic LOR1-int|LTR|ERV1 160763 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 186.5-61 chr6 153616481 153616797 + 0.833333 NA Intergenic Intergenic -393857 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 188.333-6 chr10 122778887 122779149 + 0.833333 NA intron (NR_003570, intron 14 of 27) Helitron3Na_Mam|RC|Helitron 22324 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 229-29 chr3 197086263 197086874 + 0.833333 NA intron (NM_001366216, intron 14 of 23) intron (NM_001366216, intron 14 of 23) -56751 NM_005929 4241 Hs.184727 NM_005929 ENSG00000163975 MELTF CD228|MAP97|MFI2|MTF1|MTf melanotransferrin protein-coding 208.833-19 chr2 55822478 55822728 + 0.833333 NA Intergenic Intergenic 101179 NM_001039348 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 165.667-40 chr2 222982325 222982548 + 0.833333 NA Intergenic Intergenic -69494 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 211.333-11 chr11 88227039 88227516 + 0.833333 NA Intergenic L1PB4|LINE|L1 50775 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 139.5-32 chr2 219226814 219227078 + 0.833333 NA intron (NM_024085, intron 3 of 14) intron (NM_024085, intron 3 of 14) 2690 NM_024085 79065 Hs.323363 NM_024085 ENSG00000198925 ATG9A APG9L1|MGD3208|mATG9 autophagy related 9A protein-coding 121-93 chr8 124127677 124127886 + 0.833333 NA intron (NR_103547, intron 1 of 4) intron (NR_103547, intron 1 of 4) 43741 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 223-8 chr13 90486255 90486650 + 0.833333 NA Intergenic Intergenic -6836 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 163.167-52 chrX 57553917 57554195 + 0.833333 NA Intergenic L1PB2|LINE|L1 -37780 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 237.333-2 chr10 36653314 36653873 + 0.833333 NA Intergenic L1MB3|LINE|L1 -472264 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 287.5-4 chr12 32077603 32078120 + 0.833333 NA Intergenic MIRb|SINE|MIR -28946 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 202.667-14 chr15 60608745 60609198 + 0.833333 NA intron (NR_120342, intron 5 of 5) X7C_LINE|LINE|CR1 -16445 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 145-31 chr16 72429517 72429910 + 0.833333 NA intron (NR_159371, intron 3 of 5) intron (NR_159371, intron 3 of 5) 235257 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 211.167-22 chr3 164988426 164988703 + 0.833333 NA intron (NM_001041, intron 44 of 47) intron (NM_001041, intron 44 of 47) 89932 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 147.167-5 chr1 117866962 117867305 + 0.833333 NA 3' UTR (NM_017686, exon 14 of 14) 3' UTR (NM_017686, exon 14 of 14) 62488 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 191-23 chr19 28080686 28081273 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR -287039 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 181.333-51 chr8 89096962 89097345 + 0.833333 NA Intergenic Intergenic 660558 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 147.833-61 chr7 84204983 84205399 + 0.833333 NA Intergenic Intergenic -10402 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 431 chr14 85588234 85588892 + 0.833333 NA intron (NM_001346143, intron 1 of 1) L1MA1|LINE|L1 55214 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 127.167-63 chr4 9855677 9855987 + 0.833333 NA intron (NM_001001290, intron 11 of 12) L1PA15|LINE|L1 74198 NM_000798 1816 Hs.380681 NM_000798 ENSG00000169676 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 241.5-7 chr10 107981636 107982033 + 0.833333 NA intron (NR_125760, intron 4 of 4) intron (NR_125760, intron 4 of 4) 87459 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 121.833-52 chr4 100313790 100314027 + 0.833333 NA Intergenic Intergenic 81339 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 200-54 chr5 30435757 30436154 + 0.833333 NA Intergenic L3|LINE|CR1 555395 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 119.833-25 chr14 21865491 21865889 + 0.833333 NA Intergenic MER45R|DNA|hAT-Tip100 -194673 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 140.5 chr1 48358045 48358382 + 0.833333 NA intron (NM_019073, intron 10 of 12) intron (NM_019073, intron 10 of 12) 113991 NM_019073 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 170.833-28 chr3 132941340 132941665 + 0.833333 NA Intergenic Intergenic -96786 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 173.333-9 chr1 193856480 193856774 + 0.833333 NA Intergenic Intergenic 551882 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 177.833-43 chr6 149090497 149090722 + 0.833333 NA Intergenic MIRb|SINE|MIR -57948 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 193.167-33 chr7 126010748 126011109 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -746637 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 166.333-75 chr7 109343700 109343975 + 0.833333 NA Intergenic Intergenic -459250 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 119.167-31 chr17 61974707 61974989 + 0.833333 NA intron (NM_005121, intron 16 of 29) L1MB8|LINE|L1 -46866 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 118.167-61 chr8 21448584 21448795 + 0.833333 NA Intergenic Intergenic 150450 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 164.667-20 chr12 43994934 43995159 + 0.833333 NA intron (NM_001286212, intron 3 of 6) AluSc|SINE|Alu 158965 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 318-2 chr10 106946755 106947439 + 0.833333 NA intron (NM_001206569, intron 2 of 25) L1ME3G|LINE|L1 217609 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 190.333-14 chr13 66403819 66404248 + 0.833333 NA intron (NM_001318373, intron 3 of 3) L3|LINE|CR1 185783 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 127.333-119 chr9 29842544 29842796 + 0.833333 NA Intergenic Intergenic 565784 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 143.333-28 chr17 76765050 76765322 + 0.833333 NA intron (NR_148240, intron 9 of 13) L1MB8|LINE|L1 27685 NM_001242533 79157 Hs.73965 NM_024311 ENSG00000092931 MFSD11 ET major facilitator superfamily domain containing 11 protein-coding 136.333-20 chr12 58764068 58764322 + 0.833333 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 17521 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 138.833-80 chr7 48367557 48367845 + 0.833333 NA intron (NM_152701, intron 31 of 61) MIRc|SINE|MIR 196243 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 124.833-32 chr2 12647108 12647335 + 0.833333 NA Intergenic Intergenic -69651 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 239.833-21 chr9 31223483 31223822 + 0.833333 NA Intergenic L1MB7|LINE|L1 157838 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 189.5-60 chr9 28657307 28657587 + 0.833333 NA intron (NM_152570, intron 2 of 6) L1M3|LINE|L1 61858 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 268.333-5 chr17 71182448 71183062 + 0.833333 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 19424 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 124.833-83 chr7 35825858 35826041 + 0.833333 NA intron (NM_001788, intron 1 of 12) intron (NM_001788, intron 1 of 12) 24730 NM_001363715 989 Hs.191346 NM_001788 ENSG00000122545 SEPTIN7 CDC10|CDC3|NBLA02942|SEPT7|SEPT7A septin 7 protein-coding 298.167-8 chr5 39201677 39202105 + 0.833333 NA exon (NM_001349333, exon 3 of 20) exon (NM_001349333, exon 3 of 20) 17672 NM_001465 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 185.333-27 chr18 24510118 24510477 + 0.833333 NA Intergenic Intergenic 49660 NM_001143828 59340 Hs.287388 NM_021624 ENSG00000134489 HRH4 AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R histamine receptor H4 protein-coding 205.5-14 chr18 2960533 2960801 + 0.833333 NA exon (NM_014646, exon 2 of 20) exon (NM_014646, exon 2 of 20) -14044 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 229-28 chr3 179990219 179990705 + 0.833333 NA intron (NM_016559, intron 1 of 14) AluJb|SINE|Alu -16237 NM_001349386 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 230.833-23 chr7 136477021 136477399 + 0.833333 NA Intergenic Intergenic -391442 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 147.5-61 chr4 16207351 16207619 + 0.833333 NA intron (NM_153365, intron 2 of 13) intron (NM_153365, intron 2 of 13) 18986 NM_153365 202018 Hs.479223 NM_153365 ENSG00000169762 TAPT1 CMVFR|OCLSBG transmembrane anterior posterior transformation 1 protein-coding 130-12 chr10 24662161 24662349 + 0.833333 NA intron (NM_001367450, intron 4 of 27) intron (NM_001367450, intron 4 of 27) -39412 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 192.5-11 chr13 55546779 55547163 + 0.833333 NA Intergenic Intergenic 372517 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 136.333-41 chr19 14834192 14834427 + 0.833333 NA intron (NM_001370481, intron 1 of 3) intron (NM_001370481, intron 1 of 3) 876 NM_001370485 26664 Hs.466053 NM_198944 ENSG00000127530 OR7C1 CIT-HSP-146E8|HSTPCR86P|OR19-5|OR7C4|TPCR86 olfactory receptor family 7 subfamily C member 1 protein-coding 127.333-94 chr5 171661268 171661515 + 0.833333 NA Intergenic MIRb|SINE|MIR -124481 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 156.833-11 chr11 17627351 17627737 + 0.833333 NA intron (NM_001277269, intron 38 of 54) L1M1|LINE|L1 69395 NR_132279 102723330 Hs.471111 NR_132279 ENSG00000255335 LINC02729 - long intergenic non-protein coding RNA 2729 ncRNA 157.333-60 chr5 87446565 87446950 + 0.833333 NA Intergenic Intergenic -33724 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 160.833-42 chr6 35807713 35808200 + 0.833333 NA intron (NM_182548, intron 1 of 3) MIR|SINE|MIR 2604 NM_182548 222662 Hs.367947 NM_182548 ENSG00000197753 LHFPL5 DFNB67|TMHS|dJ510O8.8 LHFPL tetraspan subfamily member 5 protein-coding 250.833-3 chr11 64463103 64463656 + 0.833333 NA Intergenic AluJr|SINE|Alu 14322 NR_073177 100996455 Hs.634142 NR_073177 ENSG00000181908 LINC02724 - long intergenic non-protein coding RNA 2724 ncRNA 177.667-32 chr18 71977921 71978213 + 0.833333 NA Intergenic LTR40c|LTR|ERVL -195841 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 206.5-6 chr12 12714551 12714999 + 0.833333 NA Intergenic Intergenic -2495 NM_004064 1027 Hs.238990 NM_004064 ENSG00000111276 CDKN1B CDKN4|KIP1|MEN1B|MEN4|P27KIP1 cyclin dependent kinase inhibitor 1B protein-coding 134.333-63 chr2 147309659 147309870 + 0.833333 NA Intergenic Intergenic -534753 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 219.333-28 chr4 57336457 57336889 + 0.833333 NA Intergenic Intergenic -89199 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 207.667-13 chr14 69447135 69447435 + 0.833333 NA intron (NM_001252148, intron 3 of 5) L1MEb|LINE|L1 -37443 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 128.167-70 chr5 127860847 127861199 + 0.833333 NA intron (NM_001317938, intron 5 of 6) AluSp|SINE|Alu 157634 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 145.833-51 chr3 155651384 155651661 + 0.833333 NA intron (NM_001349252, intron 2 of 24) intron (NM_001349252, intron 2 of 24) 24821 NM_001349250 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 125.833-71 chr5 51878419 51878735 + 0.833333 NA Intergenic MER20|DNA|hAT-Charlie -129454 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 174-31 chr2 117036950 117037289 + 0.833333 NA Intergenic L1PA12|LINE|L1 -777572 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 132.833-9 chr10 81031878 81032070 + 0.833333 NA Intergenic L1PA16|LINE|L1 382177 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 137.667-49 chr2 17625250 17625586 + 0.833333 NA intron (NM_001366805, intron 2 of 2) intron (NM_001366805, intron 2 of 2) 84722 NM_001366806 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 237.167-19 chr5 136596792 136597341 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR -231590 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 197-53 chr8 137788891 137789319 + 0.833333 NA Intergenic Intergenic 294440 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 248.833-4 chr12 98380078 98380668 + 0.833333 NA Intergenic Intergenic 76772 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 216.833-21 chr5 67671355 67671813 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -24795 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 154.833-32 chr2 160406606 160406921 + 0.833333 NA intron (NM_002897, intron 1 of 13) intron (NM_002897, intron 1 of 13) 1119 NR_039946 100616364 NR_039946 ENSG00000283734 MIR4785 mir-4785 microRNA 4785 ncRNA 241.667-11 chr14 64194226 64194921 + 0.833333 NA intron (NM_015180, intron 99 of 114) AluJb|SINE|Alu -19571 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 189-45 chr7 11717893 11718166 + 0.833333 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 114169 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 325.833-4 chr14 56765962 56766827 + 0.833333 NA Intergenic AluSx1|SINE|Alu 39273 NM_172337 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 142.333-53 chr2 76470541 76470745 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -515322 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 222.167-14 chr14 62071904 62072252 + 0.833333 NA intron (NM_001367661, intron 5 of 8) intron (NM_001367661, intron 5 of 8) -45279 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 154-77 chr8 80144787 80145194 + 0.833333 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 26131 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 221.167-18 chr3 74540341 74540812 + 0.833333 NA Intergenic MIR|SINE|MIR -19436 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 294.667-7 chr20 8706944 8707415 + 0.833333 NA intron (NM_182734, intron 11 of 32) intron (NM_182734, intron 11 of 32) -124006 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 126.167-48 chr2 219771466 219771689 + 0.833333 NA Intergenic Intergenic 133312 NR_146975 105373889 Hs.570066 NR_146975 ENSG00000228909 LINC01803 - long intergenic non-protein coding RNA 1803 ncRNA 171-18 chr18 861397 861862 + 0.833333 NA Intergenic Intergenic -43242 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 115.5-58 chr22 23062462 23062701 + 0.833333 NA intron (NM_014433, intron 5 of 6) MER103C|DNA|hAT-Charlie -7938 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 166-49 chr5 83788802 83789169 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR -68130 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 150.833-59 chr9 71345788 71346148 + 0.833333 NA intron (NM_001366143, intron 1 of 25) L1ME1|LINE|L1 101003 NM_001366141 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 195.333-12 chr15 94382449 94382916 + 0.833333 NA intron (NM_018349, intron 11 of 21) intron (NM_018349, intron 11 of 21) 26752 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 207.333-47 chr6 140766763 140767280 + 0.833333 NA Intergenic MLT1H|LTR|ERVL-MaLR 83207 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 238.5-23 chr4 61433659 61434239 + 0.833333 NA intron (NM_001371343, intron 2 of 23) L2b|LINE|L2 231777 NM_001371342 167.5-44 chr3 196923236 196923668 + 0.833333 NA exon (NM_152699, exon 7 of 10) exon (NM_152699, exon 7 of 10) -16425 NR_046630 100874001 Hs.591671 NR_046630 NCBP2-AS1 - NCBP2 antisense RNA 1 ncRNA 120.833-31 chr2 75145206 75145441 + 0.833333 NA intron (NM_015727, intron 1 of 3) L1MEd|LINE|L1 54197 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 113.167-27 chr17 58359254 58359480 + 0.833333 NA intron (NM_001305544, intron 8 of 9) AluY|SINE|Alu -7166 NM_003168 6827 Hs.439481 NM_003168 ENSG00000213246 SUPT4H1 SPT4|SPT4H|SUPT4H|Supt4a SPT4 homolog, DSIF elongation factor subunit protein-coding 127-35 chr15 48271497 48271747 + 0.833333 NA intron (NM_001184832, intron 19 of 26) intron (NM_001184832, intron 19 of 26) -59473 NM_001330286 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 173.5-38 chr3 132668478 132668862 + 0.833333 NA intron (NM_198329, intron 3 of 11) MIR|SINE|MIR 7973 NM_001321238 79876 Hs.170737 NM_024818 ENSG00000081307 UBA5 EIEE44|SCAR24|THIFP1|UBE1DC1 ubiquitin like modifier activating enzyme 5 protein-coding 123-84 chr7 90479697 90479848 + 0.833333 NA intron (NM_001365443, intron 2 of 6) intron (NM_001365443, intron 2 of 6) 10133 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 198.667-18 chr14 50771206 50771663 + 0.833333 NA exon (NM_020921, exon 10 of 31) exon (NM_020921, exon 10 of 31) -50363 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 199.667-31 chr2 180533760 180534245 + 0.833333 NA Intergenic (ATATT)n|Simple_repeat|Simple_repeat -158102 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 262.833-8 chr18 60830241 60830705 + 0.833333 NA Intergenic Intergenic -457698 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 138.167-9 chr11 97801598 97801878 + 0.833333 NA Intergenic Intergenic -1219211 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 150.833-22 chr2 104900398 104900606 + 0.833333 NA Intergenic Intergenic -27907 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 154.833-36 chr2 239842365 239842686 + 0.833333 NA Intergenic L1MA6|LINE|L1 79665 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 118.667-105 chr7 11626004 11626243 + 0.833333 NA intron (NM_015204, intron 2 of 26) intron (NM_015204, intron 2 of 26) 206075 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 149.5-8 chr1 205029102 205029429 + 0.833333 NA Intergenic L2c|LINE|L2 -13684 NM_001346083 6900 Hs.519220 NM_005076 ENSG00000184144 CNTN2 AXT|FAME5|TAG-1|TAX|TAX1 contactin 2 protein-coding 137.5-2 chr1 59785238 59785433 + 0.833333 NA intron (NR_110627, intron 2 of 2) intron (NR_110627, intron 2 of 2) 12540 NR_110627 101926944 Hs.720353 NR_110627 LOC101926944 - uncharacterized LOC101926944 ncRNA 234.5-34 chr8 112914112 112914502 + 0.833333 NA intron (NM_001363185, intron 8 of 66) intron (NM_001363185, intron 8 of 66) 270814 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 133.333-41 chr16 7281520 7281727 + 0.833333 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -51222 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 169.833-22 chr3 22884978 22885340 + 0.833333 NA Intergenic Intergenic 317419 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 157.167-69 chr9 108607963 108608322 + 0.833333 NA Intergenic Intergenic 247844 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 147.333-91 chr8 117552225 117552462 + 0.833333 NA Intergenic Intergenic 31630 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 182.333-76 chr9 31550302 31550603 + 0.833333 NA Intergenic Intergenic -168962 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 136.5-98 chr9 71346567 71346819 + 0.833333 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 100278 NM_001366141 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 239.333-15 chr3 69168586 69168937 + 0.833333 NA TTS (NM_015123) TTS (NM_015123) -46166 NM_001304418 56203 Hs.350621 NM_198271 ENSG00000163380 LMOD3 NEM10 leiomodin 3 protein-coding 256.167-14 chr3 169201418 169201911 + 0.833333 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -54193 NM_001164000 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 197.333-51 chr6 69749519 69749857 + 0.833333 NA intron (NM_001367272, intron 4 of 15) intron (NM_001367272, intron 4 of 15) 46778 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 133.833-33 chr17 28987323 28987589 + 0.833333 NA intron (NM_001290202, intron 1 of 16) OldhAT1|DNA|hAT-Ac 18577 NM_178860 124925 Hs.21837 NM_178860 ENSG00000063015 SEZ6 BSRPC seizure related 6 homolog protein-coding 115.167-101 chr7 145590832 145590997 + 0.833333 NA Intergenic Intergenic -754861 NM_001042482 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 118.667-118 chr9 260467 260723 + 0.833333 NA intron (NM_203447, intron 1 of 47) L1ME4b|LINE|L1 -12451 NM_001190458 81704 Hs.132599 NM_203447 ENSG00000107099 DOCK8 HEL-205|MRD2|ZIR8 dedicator of cytokinesis 8 protein-coding 167.333 chr1 17580388 17580779 + 0.833333 NA promoter-TSS (NM_001011722) promoter-TSS (NM_001011722) 30 NM_001011722 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 190.833-11 chr13 88336134 88336394 + 0.833333 NA Intergenic Intergenic 193397 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 351.333-2 chr11 77321327 77321880 + 0.833333 NA TTS (NM_002576) TTS (NM_002576) -19937 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 222.5-27 chr7 35557175 35557690 + 0.833333 NA Intergenic Intergenic 137703 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 161.833-26 chr20 41134310 41134715 + 0.833333 NA intron (NR_109889, intron 3 of 6) intron (NR_109889, intron 3 of 6) -3031 NM_002660 5335 Hs.268177 NM_002660 ENSG00000124181 PLCG1 NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1 phospholipase C gamma 1 protein-coding 141.5-24 chr12 113552612 113553011 + 0.833333 NA Intergenic Intergenic 80808 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 134.667-87 chr5 113394151 113394402 + 0.833333 NA intron (NM_001085377, intron 1 of 18) L2c|LINE|L2 40713 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 211.167-20 chr3 111506234 111506663 + 0.833333 NA Intergenic L1ME1|LINE|L1 -35749 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 117.333-48 chr2 128430539 128430743 + 0.833333 NA Intergenic L1MD2|LINE|L1 -111773 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 209.333-24 chr21 32145400 32145690 + 0.833333 NA Intergenic Intergenic -59250 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 147.833-40 chr2 175871337 175871884 + 0.833333 NA Intergenic Intergenic 130657 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 161.667-55 chr3 97523696 97524095 + 0.833333 NA intron (NM_001080448, intron 10 of 17) L1M2|LINE|L1 84288 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 129.5-90 chr8 124313473 124313694 + 0.833333 NA 3' UTR (NM_194291, exon 7 of 7) 3' UTR (NM_194291, exon 7 of 7) 59116 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 145.333-20 chr12 3155550 3156012 + 0.833333 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 78402 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 144.667 chr1 72543964 72544200 + 0.833333 NA Intergenic Intergenic -261543 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 128.167-61 chr4 87344640 87344832 + 0.833333 NA intron (NM_016245, intron 5 of 6) L1M4|LINE|L1 -21854 NM_178135 345275 Hs.284414 NM_178135 ENSG00000170509 HSD17B13 HMFN0376|NIIL497|SCDR9|SDR16C3 hydroxysteroid 17-beta dehydrogenase 13 protein-coding 147.5-17 chr11 85644338 85644619 + 0.833333 NA Intergenic Intergenic -3441 NM_001244735 84233 Hs.533725 NM_032273 ENSG00000171202 TMEM126A OPA7 transmembrane protein 126A protein-coding 154.167-69 chrX 129596935 129597284 + 0.833333 NA Intergenic Intergenic 56850 NM_001587 4952 Hs.126357 NM_000276 ENSG00000122126 OCRL INPP5F|LOCR|NPHL2|OCRL-1|OCRL1 OCRL inositol polyphosphate-5-phosphatase protein-coding 205.667-32 chr2 75932660 75933005 + 0.833333 NA Intergenic Intergenic -221917 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 214.5-40 chr8 99681269 99681573 + 0.833333 NA intron (NM_017890, intron 35 of 61) intron (NM_017890, intron 35 of 61) -144560 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 185.667-15 chr14 48651992 48652360 + 0.833333 NA Intergenic L1ME1|LINE|L1 -857162 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 172.5-6 chr1 174657399 174657789 + 0.833333 NA intron (NM_001366446, intron 14 of 25) L1MA5A|LINE|L1 -42945 NM_001366450 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 207-26 chr20 13330968 13331330 + 0.833333 NA Intergenic L1MEf|LINE|L1 -91462 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 194.333-39 chr7 96778246 96778720 + 0.833333 NA Intergenic Intergenic -68592 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 189.667-32 chr22 22809646 22809907 + 0.833333 NA Intergenic Intergenic -13000 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 175.167-48 chr8 108856582 108857105 + 0.833333 NA Intergenic L1M4b|LINE|L1 -69249 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 192.167-33 chr5 97967461 97967810 + 0.833333 NA Intergenic Intergenic 126877 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 118.5-22 chr12 7969204 7969423 + 0.833333 NA Intergenic AluSx1|SINE|Alu -33126 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 213.333-46 chr8 113257959 113258260 + 0.833333 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 119043 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 207-32 chr3 42307907 42308351 + 0.833333 NA Intergenic L1M1|LINE|L1 -41944 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 144.833-32 chr2 58505459 58505787 + 0.833333 NA Intergenic MIRb|SINE|MIR -15130 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 159.5-25 chr2 196584502 196584928 + 0.833333 NA intron (NM_001348768, intron 1 of 28) Plat_L3|LINE|CR1 8268 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 152.333-32 chr2 78007716 78007989 + 0.833333 NA intron (NR_110288, intron 1 of 3) HAL1|LINE|L1 -52826 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 270.5-2 chr1 169420134 169420624 + 0.833333 NA intron (NM_001300969, intron 3 of 5) intron (NM_001300969, intron 3 of 5) 7095 NM_021179 57821 Hs.567557 NM_021179 ENSG00000117477 CCDC181 C1orf114 coiled-coil domain containing 181 protein-coding 139.833-17 chr12 15340095 15340343 + 0.833333 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 17711 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 207-17 chr16 78922747 78923129 + 0.833333 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 677799 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 239.333-10 chr15 26923386 26923839 + 0.833333 NA intron (NM_001165037, intron 7 of 10) L1MDa|LINE|L1 -47569 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 188.833-19 chr18 2681713 2682025 + 0.833333 NA intron (NM_015295, intron 5 of 47) intron (NM_015295, intron 5 of 47) 25982 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 251.167-15 chr7 20894973 20895299 + 0.833333 NA intron (NR_126381, intron 2 of 5) intron (NR_126381, intron 2 of 5) 59705 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 152.167-7 chr10 33805861 33806245 + 0.833333 NA Intergenic Intergenic -33373 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 144.167-25 chr15 64922382 64922606 + 0.833333 NA intron (NM_182703, intron 4 of 14) intron (NM_182703, intron 4 of 14) 10592 NM_182703 348094 Hs.207157 NM_182703 ENSG00000166839 ANKDD1A - ankyrin repeat and death domain containing 1A protein-coding 113.667-73 chr2 207129405 207129578 + 0.833333 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) 4646 NM_001270944 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 154.833-27 chr2 68106373 68106581 + 0.833333 NA Intergenic L1ME3F|LINE|L1 -43473 NM_001190263 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 272.167-21 chr4 13962142 13962937 + 0.833333 NA Intergenic Intergenic -149429 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 171.5-61 chr8 127345952 127346236 + 0.833333 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -54305 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 191-27 chr2 32162466 32162934 + 0.833333 NA Intergenic MLT1A|LTR|ERVL-MaLR -3141 NM_001193514 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 243.167-10 chr4 70323254 70323596 + 0.833333 NA Intergenic Intergenic -11556 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 119.167-11 chr11 21547178 21547383 + 0.833333 NA intron (NM_001288713, intron 17 of 20) intron (NM_001288713, intron 17 of 20) -645805 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 222.5-16 chr21 45009180 45009620 + 0.833333 NA Intergenic L1ME1|LINE|L1 -4673 NR_024089 378825 Hs.534828 NR_024089 ENSG00000275874 PICSAR C21orf113|LINC00162|NCRNA00162|NLC1-C|NLC1C|PRED74 P38 inhibited cutaneous squamous cell carcinoma associated lincRNA ncRNA 143.167-8 chr1 216083391 216083708 + 0.833333 NA exon (NM_206933, exon 26 of 72) exon (NM_206933, exon 26 of 72) 11084 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 124.667-18 chr10 114975893 114976196 + 0.833333 NA 3' UTR (NM_139169, exon 8 of 8) 3' UTR (NM_139169, exon 8 of 8) -18613 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 139.5 chr1 18858977 18859217 + 0.833333 NA intron (NM_152232, intron 1 of 5) intron (NM_152232, intron 1 of 5) 564 NM_152232 80834 Hs.553548 NM_152232 ENSG00000179002 TAS1R2 GPR71|T1R2|TR2 taste 1 receptor member 2 protein-coding 221.833-16 chr3 161320417 161321055 + 0.833333 NA Intergenic L1M1|LINE|L1 51347 NM_001040100 165679 Hs.369104 NM_145035 ENSG00000196542 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase small subunit B protein-coding 129.167-67 chr6 35728351 35728619 + 0.833333 NA promoter-TSS (NM_001145775) promoter-TSS (NM_001145775) 98 NM_001145775 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 188.333-51 chr6 51750380 51750812 + 0.833333 NA intron (NM_138694, intron 57 of 66) MER21B|LTR|ERVL 128726 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 139.667-68 chr3 188697684 188698085 + 0.833333 NA intron (NM_005578, intron 6 of 10) intron (NM_005578, intron 6 of 10) 9103 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 123.5-2 chr1 59183617 59183877 + 0.833333 NA Intergenic MIRb|SINE|MIR -36940 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 196.333-38 chr5 36195798 36196102 + 0.833333 NA intron (NM_001085411, intron 11 of 11) L1ME3A|LINE|L1 43839 NM_032637 6502 Hs.23348 NM_005983 ENSG00000145604 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase associated protein 2 protein-coding 133.5-76 chr7 92639050 92639370 + 0.833333 NA intron (NM_001259, intron 5 of 7) intron (NM_001259, intron 5 of 7) -48820 NR_109929 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 243.833-13 chr2 125682132 125682549 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger 435645 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 135.333-86 chr8 112902625 112902837 + 0.833333 NA intron (NM_001363185, intron 8 of 66) HERVL40-int|LTR|ERVL 259238 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 114.167-93 chr8 36783580 36783781 + 0.833333 NA promoter-TSS (NR_134267) promoter-TSS (NR_134267) -694 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 201.667-20 chr2 149431308 149431653 + 0.833333 NA intron (NM_194317, intron 1 of 4) intron (NM_194317, intron 1 of 4) 100893 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 178.333-24 chr2 137320441 137320750 + 0.833333 NA intron (NM_001316349, intron 12 of 27) intron (NM_001316349, intron 12 of 27) 555050 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 129.833-44 chr3 29419493 29419806 + 0.833333 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 138337 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 229.167-22 chr2 219123671 219124152 + 0.833333 NA intron (NM_024782, intron 5 of 7) intron (NM_024782, intron 5 of 7) 36954 NM_024782 79840 Hs.225988 NM_024782 ENSG00000187736 NHEJ1 XLF non-homologous end joining factor 1 protein-coding 156.5-44 chr19 47292331 47292917 + 0.833333 NA Intergenic L1MEh|LINE|L1 -17237 NM_001736 728 Hs.2161 NM_001736 ENSG00000197405 C5AR1 C5A|C5AR|C5R1|CD88 complement C5a receptor 1 protein-coding 180-22 chr2 51435172 51435607 + 0.833333 NA intron (NR_135237, intron 4 of 10) L1MC2|LINE|L1 402788 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 116.667-48 chr18 7471741 7472152 + 0.833333 NA Intergenic Intergenic -10940 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 161.333-35 chr2 18265978 18266212 + 0.833333 NA Intergenic Intergenic 294558 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 196-48 chr4 30608776 30609056 + 0.833333 NA Intergenic Intergenic -111453 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 152.167-59 chr5 64705951 64706286 + 0.833333 NA intron (NM_001164442, intron 2 of 2) AluSz|SINE|Alu 15615 NM_001164442 100132916 Hs.591776 NM_001164442 ENSG00000145642 SHISAL2B FAM159B shisa like 2B protein-coding 155.5-8 chr11 117609100 117609432 + 0.833333 NA intron (NM_020693, intron 3 of 32) L1ME4a|LINE|L1 187950 NM_020693 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 122.833-67 chr4 87260089 87260372 + 0.833333 NA Intergenic Intergenic -39612 NM_001292006 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 302.333-8 chr6 63789012 63789701 + 0.833333 NA intron (NM_001292009, intron 37 of 43) intron (NM_001292009, intron 37 of 43) -17480 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 114.833-45 chr3 122061064 122061259 + 0.833333 NA intron (NM_001206925, intron 1 of 5) intron (NM_001206925, intron 1 of 5) 5799 NM_001206924 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 217.667-21 chr2 16376623 16376917 + 0.833333 NA Intergenic MIRb|SINE|MIR 289064 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 138.833-83 chr7 104226716 104226953 + 0.833333 NA Intergenic MIR|SINE|MIR -18787 NM_181747 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 170-36 chr2 4437394 4437821 + 0.833333 NA Intergenic L1MEf|LINE|L1 218615 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 153.833-29 chr18 1421829 1422168 + 0.833333 NA Intergenic L1MA4A|LINE|L1 -62369 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 124.667-68 chr21 10660943 10661227 + 0.833333 NA Intergenic (TCCATTCCAT)n|Simple_repeat|Simple_repeat 139571 NM_199259 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 126-82 chr6 64752579 64752776 + 0.833333 NA intron (NM_001292009, intron 22 of 43) L1PB4|LINE|L1 -548741 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 277.833-6 chr4 135802104 135802757 + 0.833333 NA Intergenic Intergenic 85663 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 187.333-74 chr7 13732453 13732877 + 0.833333 NA Intergenic Intergenic 253849 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 224-19 chr18 1502085 1502395 + 0.833333 NA Intergenic Intergenic -142611 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 139.5-67 chr7 77329266 77329504 + 0.833333 NA exon (NM_001350899, exon 21 of 30) exon (NM_001350899, exon 21 of 30) -85813 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 243.167-15 chr6 63690248 63690636 + 0.833333 NA intron (NM_001370349, intron 3 of 14) intron (NM_001370349, intron 3 of 14) 43916 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 162.5-35 chr2 186761254 186761645 + 0.833333 NA intron (NM_177454, intron 7 of 7) intron (NM_177454, intron 7 of 7) 67389 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 185-41 chr5 122450717 122450979 + 0.833333 NA exon (NM_001242935, exon 8 of 10) exon (NM_001242935, exon 8 of 10) 28239 NR_051996 153163 Hs.679757 NR_051996 ENSG00000250328 MGC32805 - uncharacterized LOC153163 ncRNA 121.5-79 chr4 180971751 180971983 + 0.833333 NA Intergenic Intergenic 187282 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 200.667-4 chr1 119321531 119321934 + 0.833333 NA Intergenic Intergenic -6520 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 149.333-18 chr11 132112862 132113207 + 0.833333 NA intron (NR_147849, intron 2 of 6) intron (NR_147849, intron 2 of 6) -171268 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 138.667-10 chr10 62514726 62515030 + 0.833333 NA intron (NM_199451, intron 4 of 7) L2c|LINE|L2 -5570 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 224.833-9 chr2 12146892 12147208 + 0.833333 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) -52080 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 121-26 chr15 82126239 82126517 + 0.833333 NA Intergenic Intergenic 37784 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 175.333-25 chr2 75539684 75540115 + 0.833333 NA intron (NM_001369524, intron 2 of 5) LTR33A_|LTR|ERVL 15831 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 190-2 chr1 76092104 76092643 + 0.833333 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 17627 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 122.833-66 chr4 79300452 79300691 + 0.833333 NA intron (NR_038342, intron 4 of 5) L2c|LINE|L2 25490 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 204.667-44 chr7 85289710 85289980 + 0.833333 NA Intergenic Intergenic -131277 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 135.667-52 chr2 76688673 76688956 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -297151 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 166.167-29 chr21 21118738 21119136 + 0.833333 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) -28225 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 179.833-15 chr17 70755415 70755752 + 0.833333 NA Intergenic Intergenic 446596 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 203.167 chr1 184821378 184821652 + 0.833333 NA intron (NM_052966, intron 8 of 13) intron (NM_052966, intron 8 of 13) -66657 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 166.833-28 chr3 80363655 80363975 + 0.833333 NA Intergenic Intergenic -401082 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 272.5 chr1 94064218 94064652 + 0.833333 NA intron (NM_000350, intron 11 of 49) L2c|LINE|L2 56713 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 226.667-29 chr6 89767110 89767420 + 0.833333 NA intron (NM_014611, intron 15 of 101) L1MC|LINE|L1 52529 NM_014611 23195 Hs.529948 NM_014611 ENSG00000112159 MDN1 Rea1 midasin AAA ATPase 1 protein-coding 135.5-63 chr5 138147415 138147611 + 0.833333 NA intron (NM_139199, intron 23 of 26) intron (NM_139199, intron 23 of 26) -8085 NM_003551 8382 Hs.730856 NM_003551 ENSG00000112981 NME5 NM23-H5|NM23H5|RSPH23 NME/NM23 family member 5 protein-coding 232-25 chr5 9309801 9310199 + 0.833333 NA intron (NM_003966, intron 5 of 22) intron (NM_003966, intron 5 of 22) -201333 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 151.167-40 chr5 67146470 67146763 + 0.833333 NA intron (NM_001290227, intron 21 of 25) intron (NM_001290227, intron 21 of 25) 50183 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 235.833-5 chr11 46390071 46390443 + 0.833333 NA intron (NM_001366692, intron 1 of 1) CpG 1357 NM_000741 1132 Hs.248100 NM_000741 ENSG00000180720 CHRM4 HM4|M4R cholinergic receptor muscarinic 4 protein-coding 133.833-45 chr3 42200643 42200816 + 0.833333 NA intron (NM_001349247, intron 11 of 16) intron (NM_001349247, intron 11 of 16) 40536 NM_014965 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 161.833-16 chr17 55517636 55518063 + 0.833333 NA Intergenic L2|LINE|L2 -96014 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 159.167-56 chr6 25461964 25462214 + 0.833333 NA intron (NM_001173977, intron 8 of 36) L1ME3B|LINE|L1 182715 NM_017640 55604 Hs.649550 NM_017640 ENSG00000079691 CARMIL1 CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 capping protein regulator and myosin 1 linker 1 protein-coding 219.333-10 chr13 56887128 56887505 + 0.833333 NA Intergenic Intergenic -253602 NM_001130404 729233 Hs.723090 NM_001130404 ENSG00000204918 PRR20B PRR20|PRR20A|PRR20C|PRR20D|PRR20E proline rich 20B protein-coding 137.667-2 chr1 78738200 78738397 + 0.833333 NA Intergenic Intergenic 88467 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 115.833-14 chr12 45902823 45903181 + 0.833333 NA intron (NM_152641, intron 20 of 20) L1ME2|LINE|L1 87572 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 213-19 chr2 148620203 148620679 + 0.833333 NA Intergenic Charlie1a|DNA|hAT-Charlie -24310 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 118.833-25 chr15 59701299 59701486 + 0.833333 NA Intergenic Intergenic -12072 NM_001368057 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 138-91 chr6 73068972 73069187 + 0.833333 NA intron (NM_001160132, intron 3 of 13) L1ME4a|LINE|L1 74435 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 166.333-77 chr7 141130568 141130801 + 0.833333 NA intron (NM_001195278, intron 1 of 3) intron (NM_001195278, intron 1 of 3) 56620 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 128-99 chrX 100020170 100020376 + 0.833333 NA Intergenic MIRb|SINE|MIR 390000 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 174-28 chr2 41424550 41424851 + 0.833333 NA Intergenic AluSz|SINE|Alu -452855 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 144.667-99 chr8 139185945 139186231 + 0.833333 NA Intergenic L1MCb|LINE|L1 -272047 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 222.5-13 chr2 211052331 211052738 + 0.833333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 434963 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 175.333-45 chr4 64242060 64242502 + 0.833333 NA Intergenic Intergenic 167169 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 170.833-49 chr8 111396940 111397163 + 0.833333 NA intron (NR_146282, intron 2 of 3) intron (NR_146282, intron 2 of 3) 20412 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 227.667-15 chr3 54480789 54481245 + 0.833333 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 158840 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 140 chr1 70012614 70012976 + 0.833333 NA intron (NM_001370785, intron 12 of 26) (ATATA)n|Simple_repeat|Simple_repeat 93473 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 142.333 chr1 7826885 7827064 + 0.833333 NA intron (NM_001289861, intron 17 of 22) intron (NM_001289861, intron 17 of 22) 26091 NM_006786 10911 Hs.715862 NM_006786 ENSG00000049247 UTS2 PRO1068|U-II|UCN2|UII urotensin 2 protein-coding 185.5-51 chr8 78590447 78590885 + 0.833333 NA intron (NM_006823, intron 2 of 3) Charlie1a|DNA|hAT-Charlie -32163 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 166.5-40 chr3 192580723 192581035 + 0.833333 NA intron (NM_004113, intron 2 of 5) AluSx|SINE|Alu 65857 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 161.5-28 chr20 21842572 21842836 + 0.833333 NA Intergenic MLT1E3|LTR|ERVL-MaLR 137040 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 238.333-13 chr14 30115369 30115852 + 0.833333 NA Intergenic Intergenic -187763 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 152.5-20 chr17 28228312 28228659 + 0.833333 NA TTS (NR_003064) TTS (NR_003064) 1922 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 238.167-30 chr9 103656718 103657058 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR -331855 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 140.667-27 chr14 88263889 88264159 + 0.833333 NA intron (NM_021161, intron 1 of 6) intron (NM_021161, intron 1 of 6) 6887 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 272.833-8 chr4 57434274 57434663 + 0.833333 NA intron (NR_125907, intron 3 of 5) intron (NR_125907, intron 3 of 5) 8596 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 173.333-65 chr7 21051137 21051372 + 0.833333 NA Intergenic Intergenic 215823 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 155.833-12 chr11 130707346 130707622 + 0.833333 NA intron (NM_001271983, intron 1 of 2) intron (NM_001271983, intron 1 of 2) 34528 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 213.333-38 chr6 47673038 47673311 + 0.833333 NA intron (NM_153839, intron 2 of 10) intron (NM_153839, intron 2 of 10) 16702 NM_153839 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 200.833-3 chr10 64148050 64148358 + 0.833333 NA Intergenic Intergenic -626314 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 252.333-12 chr13 48285110 48285667 + 0.833333 NA Intergenic L2b|LINE|L2 18314 NR_046414 100862704 Hs.374221 NR_046414 ENSG00000231473 RB1-DT LINC00441|ncRNA-RB1 RB1 divergent transcript ncRNA 115.333-94 chr6 114212198 114212363 + 0.833333 NA intron (NR_125845, intron 8 of 9) intron (NR_125845, intron 8 of 9) -149403 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 208.833-14 chr16 67962941 67963301 + 0.833333 NA intron (NM_001145962, intron 1 of 22) intron (NM_001145962, intron 1 of 22) 931 NM_001145963 6560 Hs.10094 NM_005072 ENSG00000124067 SLC12A4 CTC-479C5.17|KCC1|hKCC1 solute carrier family 12 member 4 protein-coding 201.333-8 chr10 86474823 86475221 + 0.833333 NA intron (NM_001318328, intron 4 of 18) MER46C|DNA|TcMar-Tigger 46762 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 206.167-9 chr2 75581851 75582287 + 0.833333 NA Intergenic L1MA3|LINE|L1 -12350 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 140.5-65 chr6 23916845 23917123 + 0.833333 NA Intergenic Intergenic -209231 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 261.667-11 chr14 20092304 20092707 + 0.833333 NA Intergenic Intergenic -24963 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 125.667-89 chr4 96745140 96745333 + 0.833333 NA intron (NR_147149, intron 3 of 3) MER113|DNA|hAT-Charlie 434533 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 221.667-35 chr7 55994311 55994810 + 0.833333 NA intron (NM_001202469, intron 5 of 7) AluSx1|SINE|Alu 29975 NM_001202469 2631 Hs.591069 NM_001483 ENSG00000146729 NIPSNAP2 GBAS nipsnap homolog 2 protein-coding 138.667-3 chr1 113338309 113338681 + 0.833333 NA Intergenic Intergenic -52020 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 114.5-41 chr18 22841977 22842315 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -55309 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 155.833-61 chr6 44437924 44438149 + 0.833333 NA intron (NM_001253, intron 14 of 15) AluJb|SINE|Alu 2395 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 114.5-77 chr5 118784277 118784551 + 0.833333 NA Intergenic Intergenic 188226 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 162.833-49 chr8 47767844 47768104 + 0.833333 NA Intergenic L1M4|LINE|L1 -29810 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT enhancer binding protein delta protein-coding 163-31 chr2 55613719 55614022 + 0.833333 NA intron (NM_020463, intron 2 of 14) intron (NM_020463, intron 2 of 14) 3752 NM_020463 57223 Hs.516182 NM_020463 ENSG00000275052 PPP4R3B FLFL2|PP4R3B|PSY2|SMEK2|smk1 protein phosphatase 4 regulatory subunit 3B protein-coding 146.5-61 chr4 72711394 72711900 + 0.833333 NA Intergenic MLT1H|LTR|ERVL-MaLR -142426 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 116.167-49 chr3 120695430 120695667 + 0.833333 NA intron (NM_173825, intron 5 of 7) intron (NM_173825, intron 5 of 7) -13309 NM_000187 3081 Hs.368254 NM_000187 ENSG00000113924 HGD AKU|HGO homogentisate 1,2-dioxygenase protein-coding 173.333-25 chr17 29412608 29413140 + 0.833333 NA intron (NM_025142, intron 1 of 17) intron (NM_025142, intron 1 of 17) 21949 NM_025142 57551 Hs.597434 NM_020791 ENSG00000160551 TAOK1 KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1 TAO kinase 1 protein-coding 209.167 chr1 75605564 75605973 + 0.833333 NA intron (NM_152697, intron 1 of 23) intron (NM_152697, intron 1 of 23) 5346 NM_152697 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 171-59 chr7 140170807 140171046 + 0.833333 NA intron (NM_030647, intron 1 of 19) intron (NM_030647, intron 1 of 19) 6057 NM_030647 80853 Hs.308710 NM_030647 ENSG00000006459 KDM7A JHDM1D lysine demethylase 7A protein-coding 217.333-13 chr17 51271674 51272111 + 0.833333 NA intron (NM_016001, intron 4 of 13) AluSz|SINE|Alu 11346 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18 small subunit processome component protein-coding 170.667-28 chr17 53137951 53138301 + 0.833333 NA Intergenic Intergenic 152621 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 140.5-57 chr4 166548246 166548560 + 0.833333 NA Intergenic Intergenic 675166 NM_001204760 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 301.333-3 chr11 32418897 32419428 + 0.833333 NA intron (NR_160306, intron 3 of 9) intron (NR_160306, intron 3 of 9) 11651 NM_001198552 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 185.167-20 chr18 69227064 69227411 + 0.833333 NA Intergenic Intergenic -173651 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 254.667-23 chr5 27335296 27335665 + 0.833333 NA Intergenic Intergenic -136812 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 247.5-13 chr17 62317812 62318397 + 0.833333 NA Intergenic L1PB4|LINE|L1 -42449 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 165.833-55 chr8 132739629 132740047 + 0.833333 NA intron (NM_144649, intron 5 of 9) L2a|LINE|L2 20744 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 200.333-4 chr1 198863628 198864010 + 0.833333 NA intron (NR_040073, intron 2 of 2) MIRc|SINE|MIR -4666 NR_029626 406995 NR_029626 ENSG00000207759 MIR181A1 MIR213|MIRN181A1|MIRN213|hsa-mir-181a-1|mir-181a-1|mir-213 microRNA 181a-1 ncRNA 245-4 chr11 83223841 83224264 + 0.833333 NA intron (NM_001300975, intron 5 of 10) HAL1ME|LINE|L1 30340 NM_001300976 338699 Hs.503438 NM_182603 ENSG00000137494 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 125.333-19 chr10 63229340 63229555 + 0.833333 NA intron (NM_001322252, intron 2 of 24) intron (NM_001322252, intron 2 of 24) 39776 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 173.667-50 chr4 145536185 145536580 + 0.833333 NA intron (NM_005900, intron 2 of 6) L1MC4|LINE|L1 -19188 NR_126371 104326058 Hs.714527 NR_126371 ENSG00000250902 SMAD1-AS1 - SMAD1 antisense RNA 1 ncRNA 187.167-40 chr8 6453578 6454053 + 0.833333 NA intron (NM_024596, intron 8 of 13) intron (NM_024596, intron 8 of 13) 46662 NM_001322045 79648 Hs.593807 NM_024596 ENSG00000147316 MCPH1 BRIT1|MCT microcephalin 1 protein-coding 114.833-36 chr2 147735099 147735279 + 0.833333 NA Intergenic AluSz|SINE|Alu -109328 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 196-35 chr2 136357288 136357643 + 0.833333 NA Intergenic Intergenic -239310 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 144.333-81 chr7 91136152 91136529 + 0.833333 NA intron (NM_012395, intron 13 of 13) intron (NM_012395, intron 13 of 13) -128093 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 169.5-9 chr11 36706049 36706371 + 0.833333 NA Intergenic Intergenic -107931 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 180.833-39 chr6 155893764 155894183 + 0.833333 NA Intergenic Intergenic -52824 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 286.167 chr10 4393456 4393990 + 0.833333 NA intron (NR_108054, intron 2 of 2) intron (NR_108054, intron 2 of 2) 9477 NR_108054 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 135.667-10 chr1 225526058 225526305 + 0.833333 NA intron (NM_001008493, intron 4 of 14) HAL1|LINE|L1 -97326 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 186-23 chr2 54967142 54967646 + 0.833333 NA intron (NM_001039753, intron 38 of 40) intron (NM_001039753, intron 38 of 40) 42878 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 164.667-18 chr12 28392132 28392427 + 0.833333 NA intron (NM_001352082, intron 9 of 13) intron (NM_001352082, intron 9 of 13) -201541 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 169.5-28 chr2 47923002 47923388 + 0.833333 NA Intergenic Intergenic -17402 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 259.167-4 chr2 28903858 28904484 + 0.833333 NA intron (NM_015131, intron 2 of 17) intron (NM_015131, intron 2 of 17) -9491 NR_003074 692209 NR_003074 ENSG00000264994 SNORD92 HBII-316 small nucleolar RNA, C/D box 92 snoRNA 180.667-52 chr3 148774626 148774974 + 0.833333 NA Intergenic Intergenic 44620 NM_032049 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 139-77 chr8 66252937 66253198 + 0.833333 NA Intergenic MER34B|LTR|ERV1 60953 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 145-95 chr9 28016237 28016470 + 0.833333 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -442487 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 166.5-14 chr12 74921156 74921488 + 0.833333 NA Intergenic LTR85a|LTR|Gypsy? 288426 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 135.667-64 chr21 32007226 32007501 + 0.833333 NA Intergenic Intergenic 78932 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 179-48 chr6 127248846 127249282 + 0.833333 NA Intergenic Intergenic -17618 NM_001242851 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 231.5-4 chr11 44250033 44250431 + 0.833333 NA 3' UTR (NM_001178083, exon 15 of 15) 3' UTR (NM_001178083, exon 15 of 15) 59907 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 198.667-23 chr17 59715308 59715799 + 0.833333 NA intron (NM_001329394, intron 1 of 11) THE1D|LTR|ERVL-MaLR 7899 NM_001329394 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 236.667-20 chr2 224629358 224629891 + 0.833333 NA Intergenic Intergenic -44227 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 209.167-13 chr15 97649097 97649487 + 0.833333 NA Intergenic MER44D|DNA|TcMar-Tigger -88594 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 197.667 chr1 5282018 5282450 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR 580507 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 131.5-61 chr5 15739569 15739820 + 0.833333 NA intron (NM_001278317, intron 2 of 3) L1MB8|LINE|L1 -124692 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 128.5-22 chr14 51865484 51865733 + 0.833333 NA intron (NM_001243774, intron 1 of 2) intron (NM_001243774, intron 1 of 2) 4996 NM_001243773 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 230.333-39 chr9 12111055 12111421 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -582147 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 164.833-19 chr15 85490130 85490518 + 0.833333 NA intron (NM_007200, intron 2 of 36) intron (NM_007200, intron 2 of 36) 109721 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 177.833-50 chr9 29205077 29205333 + 0.833333 NA intron (NM_001354574, intron 1 of 5) AluSc|SINE|Alu 7094 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 148-60 chr4 102120189 102120473 + 0.833333 NA Intergenic L1MA3|LINE|L1 203981 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 571.334 chr4 61170370 61171738 + 0.833333 NA Intergenic AluSc5|SINE|Alu 27398 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 147.667-40 chr22 25449702 25450001 + 0.833333 NA intron (NR_033734, intron 1 of 4) L1M3|LINE|L1 1764 NR_033733 1416 Hs.571835 NR_033733 ENSG00000100058 CRYBB2P1 CRYB2B crystallin beta B2 pseudogene 1 pseudo 194-16 chr13 67644503 67644773 + 0.833333 NA Intergenic Intergenic 272251 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 217.667-9 chr14 50461722 50462004 + 0.833333 NA intron (NM_198794, intron 13 of 31) AluSc|SINE|Alu -64565 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 129-86 chr6 67694820 67694996 + 0.833333 NA Intergenic Intergenic -360443 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 189.667-46 chr7 52824678 52824927 + 0.833333 NA Intergenic Intergenic -210831 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 137.333-85 chr6 50458790 50459093 + 0.833333 NA Intergenic Intergenic -254603 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 131.167-10 chr10 69367686 69368024 + 0.833333 NA intron (NM_001322367, intron 4 of 16) intron (NM_001322367, intron 4 of 16) 49008 NM_001322367 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 139-70 chr7 36979939 36980168 + 0.833333 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) 5059 NM_001039459 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 149.833-12 chr19 38953315 38953500 + 0.833333 NA promoter-TSS (NM_148169) promoter-TSS (NM_148169) -720 NM_148169 115290 Hs.531770 NM_024907 ENSG00000269190 FBXO17 FBG4|FBX26|FBXO26|Fbx17 F-box protein 17 protein-coding 169.5-29 chr2 57767510 57767878 + 0.833333 NA Intergenic Intergenic -139957 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 309.833-4 chr5 121024556 121025171 + 0.833333 NA Intergenic Intergenic -297687 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 161.667-88 chr8 90404518 90404948 + 0.833333 NA Intergenic Intergenic 183245 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 177.5-39 chr2 71946794 71947232 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger 200849 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 197.167-50 chr5 173524420 173524700 + 0.833333 NA Intergenic Intergenic -55074 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 127.333-82 chr3 177456188 177456468 + 0.833333 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 14407 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 136-39 chr2 206934345 206934548 + 0.833333 NA Intergenic Intergenic -5072 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 122.167-79 chrX 25554562 25554812 + 0.833333 NA Intergenic Intergenic -538722 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 251-18 chr4 97807517 97808040 + 0.833333 NA intron (NM_174952, intron 9 of 10) L1MEg|LINE|L1 335698 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 115.167-43 chr16 63187093 63187403 + 0.833333 NA Intergenic Intergenic -1150810 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 290-6 chr3 180331238 180331977 + 0.833333 NA Intergenic Intergenic -82566 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 149.167-19 chr14 62445223 62445526 + 0.833333 NA Intergenic Intergenic -305401 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 188.667-44 chr5 36750884 36751323 + 0.833333 NA Intergenic Intergenic 125591 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 219.333 chr1 69560582 69560942 + 0.833333 NA Intergenic L1PA10|LINE|L1 -6572 NM_001366837 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 275.667-24 chr7 81008112 81008613 + 0.833333 NA Intergenic MIRb|SINE|MIR -85973 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 177-67 chr8 30226721 30227085 + 0.833333 NA Intergenic AluSx3|SINE|Alu 70534 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 203.167-39 chr9 27560854 27561197 + 0.833333 NA 3' UTR (NM_145005, exon 5 of 5) 3' UTR (NM_145005, exon 5 of 5) 12456 NM_018325 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 215.833-7 chr16 74231044 74231352 + 0.833333 NA Intergenic Intergenic -15677 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 163.333-76 chr8 87827367 87827682 + 0.833333 NA Intergenic LTR37A|LTR|ERV1 46491 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 230.5-25 chr9 13544134 13544552 + 0.833333 NA Intergenic Intergenic -113014 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 259.667-9 chr15 67999528 67999907 + 0.833333 NA Intergenic Intergenic -54462 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 144.667-33 chr13 27951840 27952026 + 0.833333 NA Intergenic L1ME3G|LINE|L1 -1593 NR_135254 100132234 Hs.197435 NR_135254 ENSG00000260704 LINC00543 - long intergenic non-protein coding RNA 543 ncRNA 149.833-56 chr8 54021209 54021443 + 0.833333 NA intron (NM_006756, intron 1 of 9) intron (NM_006756, intron 1 of 9) 1122 NR_109902 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 114.5-47 chr2 40007516 40007775 + 0.833333 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 90011 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 205.5-24 chr2 221855725 221856284 + 0.833333 NA Intergenic Intergenic -281802 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 205.5-7 chr14 98739311 98739677 + 0.833333 NA Intergenic Intergenic 27881 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 236.833-5 chr14 83519106 83519492 + 0.833333 NA Intergenic Intergenic 876667 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 260.5-28 chr8 133777943 133778634 + 0.833333 NA promoter-TSS (NR_125422) promoter-TSS (NR_125422) -936 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 196-15 chr11 87730589 87730958 + 0.833333 NA Intergenic L1MDa|LINE|L1 -11362 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 161-71 chr7 91810309 91810629 + 0.833333 NA Intergenic L1PA13|LINE|L1 70233 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 177.167-7 chr14 42605954 42606316 + 0.833333 NA Intergenic AluSz6|SINE|Alu 999279 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 195.667-40 chr7 52954492 52954836 + 0.833333 NA Intergenic L1MD3|LINE|L1 -80969 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 167.167-37 chr2 129431086 129431441 + 0.833333 NA Intergenic Intergenic -157372 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 183.167-36 chr3 189429320 189429891 + 0.833333 NA Intergenic Intergenic -167141 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 218.833-23 chr4 165471978 165472325 + 0.833333 NA intron (NM_001873, intron 3 of 8) MER50-int|LTR|ERV1 85909 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 155.167-28 chr22 34824078 34824307 + 0.833333 NA intron (NR_138042, intron 3 of 4) L2b|LINE|L2 173724 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 123.833-41 chr3 102343730 102343926 + 0.833333 NA Intergenic MER34|LTR|ERV1 -91187 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 138.667-92 chr7 41014063 41014244 + 0.833333 NA Intergenic L1MD2|LINE|L1 -34214 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 158.833-43 chr4 27837441 27837777 + 0.833333 NA Intergenic Tigger4|DNA|TcMar-Tigger 620130 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 215.667-5 chr1 224080253 224080629 + 0.833333 NA Intergenic Intergenic -33670 NM_001136115 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 147.5-41 chr2 22209435 22209646 + 0.833333 NA Intergenic L1M5|LINE|L1 -326939 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 127.167-7 chr1 184289539 184289840 + 0.833333 NA Intergenic MLT2A1|LTR|ERVL -97340 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 176.833-4 chr10 52021826 52022121 + 0.833333 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) 292155 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 166-71 chr8 114948397 114948693 + 0.833333 NA Intergenic Intergenic 719468 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 126.333-25 chr13 82053964 82054235 + 0.833333 NA Intergenic L1PA15|LINE|L1 -827116 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 135-30 chr17 54792044 54792247 + 0.833333 NA Intergenic Intergenic -108546 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 180-27 chr20 18237090 18237633 + 0.833333 NA Intergenic Intergenic -50867 NM_001283000 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 123.833-71 chr8 134858976 134859237 + 0.833333 NA intron (NR_125427, intron 1 of 2) MER5B|DNA|hAT-Charlie 9171 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 174.667-56 chr6 44559856 44560154 + 0.833333 NA Intergenic Intergenic -8124 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 115.333-113 chrX 127963075 127963332 + 0.833333 NA Intergenic L1PB1|LINE|L1 89200 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 150.5-31 chr16 57983070 57983500 + 0.833333 NA intron (NM_199456, intron 2 of 7) AluJo|SINE|Alu 6850 NM_199046 374739 Hs.132976 NM_199046 ENSG00000159648 TEPP - testis, prostate and placenta expressed protein-coding 114.5-65 chr3 54893603 54893783 + 0.833333 NA intron (NM_018398, intron 25 of 37) intron (NM_018398, intron 25 of 37) 7562 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 303.667-10 chr9 95861347 95861847 + 0.833333 NA intron (NR_023390, intron 1 of 2) L1M3|LINE|L1 -14094 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 315.5-2 chr18 21035974 21036734 + 0.833333 NA intron (NM_005406, intron 9 of 32) intron (NM_005406, intron 9 of 32) 75459 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 135.5-88 chrX 23831530 23831806 + 0.833333 NA Intergenic AluSx1|SINE|Alu 48510 NR_027783 6303 Hs.28491 NM_002970 ENSG00000130066 SAT1 DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1 spermidine/spermine N1-acetyltransferase 1 protein-coding 165.333-57 chr6 162261849 162262332 + 0.833333 NA intron (NM_004562, intron 3 of 11) intron (NM_004562, intron 3 of 11) -465042 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 222.667-27 chr4 178665642 178666190 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL -757980 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 163.833-9 chr10 81046475 81046685 + 0.833333 NA Intergenic L1PA13|LINE|L1 396783 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 165.833-19 chr14 105521867 105522273 + 0.833333 NA Intergenic AluJb|SINE|Alu -4513 NM_025268 80757 Hs.157527 NM_025268 ENSG00000184986 TMEM121 TMEM121A|hole transmembrane protein 121 protein-coding 170.5-57 chr5 103466394 103466636 + 0.833333 NA Intergenic Intergenic 75470 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 244.167-9 chr16 52837316 52837748 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger 215341 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 173.5-32 chr21 26838358 26838739 + 0.833333 NA exon (NM_006988, exon 8 of 9) exon (NM_006988, exon 8 of 9) 6861 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 205.667-7 chr11 80851052 80851391 + 0.833333 NA Intergenic Intergenic -88418 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 249-16 chr5 91740310 91740714 + 0.833333 NA Intergenic (ATT)n|Simple_repeat|Simple_repeat -357195 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 164.667-48 chr3 132863515 132864002 + 0.833333 NA intron (NR_002811, intron 10 of 10) L1ME1|LINE|L1 -141299 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 191-52 chr8 82735733 82736173 + 0.833333 NA Intergenic THE1B-int|LTR|ERVL-MaLR -176151 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 201.667-15 chr15 57973035 57973429 + 0.833333 NA intron (NM_170696, intron 6 of 11) intron (NM_170696, intron 6 of 11) 40791 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 132.333-92 chr6 71310931 71311267 + 0.833333 NA Intergenic Intergenic 22288 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 133.833-35 chr18 6339146 6339343 + 0.833333 NA intron (NM_001365765, intron 1 of 18) L1MEg|LINE|L1 19786 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 160.167-60 chr7 103701982 103702295 + 0.833333 NA intron (NM_005045, intron 8 of 64) intron (NM_005045, intron 8 of 64) -255931 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 228.667-20 chr2 69003894 69004340 + 0.833333 NA Intergenic Intergenic -9027 NM_032208 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 127.333-14 chr10 84801102 84801297 + 0.833333 NA Intergenic MIRb|SINE|MIR 376030 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 145.833-15 chr11 55947735 55948231 + 0.833333 NA Intergenic Intergenic -11583 NM_006637 10798 Hs.533706 NM_006637 ENSG00000167825 OR5I1 HSOlf1|OLF1 olfactory receptor family 5 subfamily I member 1 protein-coding 207.667-11 chr14 20327261 20327799 + 0.833333 NA promoter-TSS (NR_003693) promoter-TSS (NR_003693) -991 NR_003693 100113391 NR_003693 SNORD126 MIR1201|MIRN1201 small nucleolar RNA, C/D box 126 snoRNA 159.333-63 chr5 24528130 24528456 + 0.833333 NA intron (NM_001362460, intron 5 of 9) intron (NM_001362460, intron 5 of 9) 116685 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 183.167-32 chr3 70939524 70939812 + 0.833333 NA Intergenic L1MEc|LINE|L1 125256 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 164.833-18 chr14 84925891 84926131 + 0.833333 NA Intergenic Intergenic -345921 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 211.5-12 chr16 47795660 47796088 + 0.833333 NA Intergenic L1MA9|LINE|L1 -62707 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 204.834-9 chr6 69053922 69054542 + 0.833333 NA intron (NM_001704, intron 15 of 31) intron (NM_001704, intron 15 of 31) 418950 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 205.833-31 chr8 64544385 64544799 + 0.833333 NA Intergenic L1M5|LINE|L1 32671 NR_015374 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 165.333-7 chr10 68232258 68232539 + 0.833333 NA promoter-TSS (NM_145178) promoter-TSS (NM_145178) -285 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 286-9 chr3 177557306 177557780 + 0.833333 NA intron (NR_047568, intron 2 of 3) MSTD|LTR|ERVL-MaLR 115622 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 251-4 chr11 37925008 37925627 + 0.833333 NA Intergenic Intergenic -13284 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 207.5-4 chr10 118861148 118861649 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -106428 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 243.833-11 chr18 13901981 13902362 + 0.833333 NA intron (NM_001291911, intron 1 of 1) L1MA1|LINE|L1 13365 NM_000529 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 144.667-15 chr10 53193551 53194113 + 0.833333 NA Intergenic L2c|LINE|L2 -422132 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 154.167-5 chr10 20434559 20434847 + 0.833333 NA Intergenic MSTB|LTR|ERVL-MaLR -117267 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 117.833-85 chr9 74285730 74285879 + 0.833333 NA Intergenic Intergenic -85727 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 219.5-32 chr5 29637478 29637898 + 0.833333 NA Intergenic L1MA6|LINE|L1 -241712 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 174.667-75 chr9 68643949 68644189 + 0.833333 NA Intergenic Helitron2Na_Mam|RC?|Helitron? -61171 NM_003558 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 182.333-29 chr2 36424348 36424641 + 0.833333 NA intron (NM_016441, intron 2 of 16) L2b|LINE|L2 68716 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 151-61 chr5 67694685 67695094 + 0.833333 NA Intergenic Intergenic -48100 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 153.333-70 chr6 117540902 117541120 + 0.833333 NA exon (NM_001366459, exon 11 of 15) exon (NM_001366459, exon 11 of 15) 58337 NM_001366460 285761 Hs.658304 NM_173674 ENSG00000164465 DCBLD1 dJ94G16.1 discoidin, CUB and LCCL domain containing 1 protein-coding 113.167-59 chr5 93700179 93700377 + 0.833333 NA intron (NM_032042, intron 10 of 10) intron (NM_032042, intron 10 of 10) 41322 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 143-42 chr21 28432035 28432271 + 0.833333 NA Intergenic LTR40a|LTR|ERVL -107165 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 204.167-6 chr10 75568629 75569092 + 0.833333 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) 16402 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 164.5-18 chr14 49004644 49005086 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR 581515 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 178.333-19 chr17 53420017 53420388 + 0.833333 NA Intergenic Charlie3|DNA|hAT-Charlie -402725 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 200.833-4 chr10 99670175 99670463 + 0.833333 NA intron (NM_001349962, intron 4 of 13) MER3|DNA|hAT-Charlie 10690 NM_001349963 57089 Hs.28326 NM_020354 ENSG00000198018 ENTPD7 LALP1 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding 116.333-66 chr4 31955005 31955197 + 0.833333 NA Intergenic (AAGA)n|Simple_repeat|Simple_repeat -42278 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 243-18 chr2 82172703 82173130 + 0.833333 NA Intergenic Intergenic -683887 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 165.667-16 chr11 95898732 95899043 + 0.833333 NA intron (NM_016156, intron 1 of 14) intron (NM_016156, intron 1 of 14) 25220 NM_201281 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 371.167-4 chr2 147038131 147038887 + 0.833333 NA Intergenic Intergenic 451452 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 225.667-34 chr8 81404572 81405003 + 0.833333 NA Intergenic Intergenic 42652 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 143.167-7 chr1 195081058 195081248 + 0.833333 NA Intergenic Intergenic 1007562 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 148.833-60 chr8 66869864 66870190 + 0.833333 NA promoter-TSS (NM_001136161) promoter-TSS (NM_001136161) -744 NM_001136161 157777 Hs.437006 NM_173518 ENSG00000178460 MCMDC2 C8orf45 minichromosome maintenance domain containing 2 protein-coding 137.167-15 chr12 41393266 41393696 + 0.833333 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -44258 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 191.167-32 chr7 5376299 5376628 + 0.833333 NA intron (NM_001080495, intron 8 of 29) intron (NM_001080495, intron 8 of 29) 47083 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 118.5-72 chr4 30555508 30555708 + 0.833333 NA Intergenic Intergenic -164761 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 272.167-25 chrX 41654547 41655065 + 0.833333 NA intron (NM_003688, intron 8 of 26) MER4B-int|LTR|ERV1 -34167 NM_001097579 2857 Hs.495989 NM_005300 ENSG00000171659 GPR34 LYPSR1 G protein-coupled receptor 34 protein-coding 155-40 chr2 185171831 185172072 + 0.833333 NA Intergenic Intergenic -4879 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 215.833 chr1 245920733 245921089 + 0.833333 NA intron (NM_022743, intron 7 of 11) L1PA16|LINE|L1 496501 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 118.833-3 chr1 109423023 109423487 + 0.833333 NA intron (NM_001199774, intron 1 of 8) AluSx1|SINE|Alu 3193 NM_001199774 5686 Hs.485246 NM_002790 ENSG00000143106 PSMA5 PSC5|ZETA proteasome subunit alpha 5 protein-coding 114.167-101 chr9 108133789 108133994 + 0.833333 NA Intergenic Intergenic -644122 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 151.833-58 chr8 129604393 129604786 + 0.833333 NA intron (NR_130917, intron 1 of 3) THE1C-int|LTR|ERVL-MaLR -29571 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 135.333-35 chr18 54421241 54421563 + 0.833333 NA Intergenic Intergenic 63485 NR_110234 162681 Hs.208701 NM_173529 ENSG00000166845 C18orf54 LAS2 chromosome 18 open reading frame 54 protein-coding 227.333-13 chr15 56258254 56258703 + 0.833333 NA Intergenic L1PA12|LINE|L1 -13396 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 197.333-39 chr4 40458349 40458663 + 0.833333 NA intron (NM_001098634, intron 3 of 6) intron (NM_001098634, intron 3 of 6) 43613 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 162.167-25 chr2 212779428 212779774 + 0.833333 NA Intergenic Intergenic -15730 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 117.167-60 chr3 52786880 52787043 + 0.833333 NA exon (NM_001166434, exon 12 of 20) exon (NM_001166434, exon 12 of 20) 7035 NM_001166436 3697 Hs.76716 NM_002215 ENSG00000055957 ITIH1 H1P|IATIH|IGHEP1|ITI-HC1|ITIH|SHAP inter-alpha-trypsin inhibitor heavy chain 1 protein-coding 131.167-26 chr14 56216183 56216497 + 0.833333 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 97929 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 135.5-5 chr1 178295851 178296054 + 0.833333 NA intron (NM_170692, intron 2 of 17) intron (NM_170692, intron 2 of 17) -45499 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 224-14 chr15 77447539 77447904 + 0.833333 NA 5' UTR (NM_018200, exon 2 of 11) 5' UTR (NM_018200, exon 2 of 11) 26833 NM_001304504 10363 Hs.69594 NM_018200 ENSG00000140382 HMG20A HMGX1|HMGXB1 high mobility group 20A protein-coding 119.333-114 chr8 129439144 129439396 + 0.833333 NA intron (NR_130920, intron 1 of 3) L1ME3C|LINE|L1 44872 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 232.333-29 chr5 122531735 122532094 + 0.833333 NA Intergenic MLT1M|LTR|ERVL-MaLR 52686 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 119.167-37 chr2 16774217 16774382 + 0.833333 NA Intergenic MER58C|DNA|hAT-Charlie -108465 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 167.167-47 chr5 107028321 107028698 + 0.833333 NA Intergenic Intergenic -17495 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 200.167-43 chr8 101794179 101794541 + 0.833333 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -3391 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 242.833 chr1 48159929 48160491 + 0.833333 NA intron (NR_026749, intron 6 of 9) intron (NR_026749, intron 6 of 9) 22218 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 223.833-9 chr10 75820975 75821336 + 0.833333 NA intron (NM_032024, intron 1 of 5) L1PB4|LINE|L1 38394 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 114.667-65 chr20 38572624 38572830 + 0.833333 NA intron (NM_001282917, intron 28 of 29) L1MC5a|LINE|L1 -8470 NM_001018082 149685 Hs.368028 NM_174906 ENSG00000182035 ADIG SMAF1 adipogenin protein-coding 173.667-45 chr4 46526845 46527111 + 0.833333 NA Intergenic Intergenic -136850 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 116.333-93 chr6 55998723 55998920 + 0.833333 NA Intergenic L2a|LINE|L2 92841 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 142.167-58 chr4 33871578 33871807 + 0.833333 NA Intergenic Intergenic 168201 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 175-5 chr1 109560012 109560390 + 0.833333 NA intron (NM_006496, intron 1 of 8) intron (NM_006496, intron 1 of 8) 11586 NM_006496 2773 Hs.73799 NM_006496 ENSG00000065135 GNAI3 87U6|ARCND1 G protein subunit alpha i3 protein-coding 167.5-48 chr5 2483373 2483663 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -171317 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 133-93 chr8 60093114 60093351 + 0.833333 NA Intergenic Intergenic 188168 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 127.167-71 chr5 132766141 132766390 + 0.833333 NA intron (NM_001098813, intron 1 of 9) intron (NM_001098813, intron 1 of 9) 10974 NM_001300798 23176 Hs.522057 NM_015146 ENSG00000164402 SEPTIN8 SEP2|SEPT8 septin 8 protein-coding 115.333-12 chr10 80736363 80736598 + 0.833333 NA Intergenic L1M6|LINE|L1 86683 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 153.5-64 chr6 64735722 64736030 + 0.833333 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -565542 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 159-7 chr1 115593064 115593280 + 0.833333 NA Intergenic L2c|LINE|L2 -48798 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 131-59 chr5 152333051 152333245 + 0.833333 NA Intergenic Intergenic 72131 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 180-57 chr8 91664197 91664501 + 0.833333 NA Intergenic Intergenic 353331 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 134-66 chr2 191930591 191930840 + 0.833333 NA Intergenic Intergenic -83627 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 183.833-7 chr11 24964566 24964897 + 0.833333 NA intron (NM_001009909, intron 7 of 11) intron (NM_001009909, intron 7 of 11) 467678 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 136-18 chr12 25778142 25778324 + 0.833333 NA Intergenic Intergenic 95846 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 208.333-17 chr17 12674832 12675127 + 0.833333 NA intron (NR_104605, intron 2 of 2) L1ME3G|LINE|L1 9089 NM_153604 93649 Hs.462257 NM_153604 ENSG00000141052 MYOCD MYCD myocardin protein-coding 156.5-18 chr11 5077191 5077494 + 0.833333 NA Intergenic (TTTTG)n|Simple_repeat|Simple_repeat 7970 NM_001348221 79296 NM_001348221 ENSG00000273085 OR52E1 OR52E1P olfactory receptor family 52 subfamily E member 1 (gene/pseudogene) protein-coding 172.667-38 chr2 80574682 80575150 + 0.833333 NA intron (NM_001282599, intron 7 of 11) L1ME3G|LINE|L1 261537 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 254.167-12 chr3 97205153 97205794 + 0.833333 NA intron (NM_001080448, intron 3 of 17) MER8|DNA|TcMar-Tigger -234134 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 200-38 chr2 102672206 102672545 + 0.833333 NA intron (NM_003048, intron 3 of 11) intron (NM_003048, intron 3 of 11) 52822 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 170.667-10 chr11 105601843 105602260 + 0.833333 NA Intergenic Intergenic -8022 NM_001077244 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 139.333-59 chr3 52333928 52334204 + 0.833333 NA intron (NM_015512, intron 8 of 77) Tigger3|DNA|TcMar-Tigger 17747 NM_015512 25981 Hs.655469 NM_015512 ENSG00000114841 DNAH1 CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1 dynein axonemal heavy chain 1 protein-coding 221.5-12 chr14 37475602 37475867 + 0.833333 NA intron (NM_138731, intron 12 of 13) L1MC2|LINE|L1 119515 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 142.5-48 chr3 24229353 24229603 + 0.833333 NA intron (NM_001354708, intron 2 of 9) MER5A1|DNA|hAT-Charlie 78154 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 141-40 chr2 45905978 45906254 + 0.833333 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 254441 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 153.5-42 chr21 30023612 30023962 + 0.833333 NA Intergenic Arthur1|DNA|hAT-Tip100 -83735 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 153.5-15 chr12 4473241 4473662 + 0.833333 NA Intergenic Intergenic -27837 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 253.167-11 chr5 110605306 110605731 + 0.833333 NA intron (NM_001039763, intron 9 of 13) L1ME4c|LINE|L1 -91603 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 236-31 chr9 89164702 89165025 + 0.833333 NA intron (NM_016848, intron 1 of 11) L1M5|LINE|L1 13955 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 114.833-70 chr8 30483938 30484231 + 0.833333 NA intron (NM_001008710, intron 4 of 8) L1MB4|LINE|L1 -98683 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 495.167 chr1 67037334 67038140 + 0.833333 NA intron (NM_015139, intron 8 of 11) intron (NM_015139, intron 8 of 11) 16411 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 168-18 chr14 50577933 50578263 + 0.833333 NA intron (NM_015915, intron 1 of 13) intron (NM_015915, intron 1 of 13) 18073 NM_181598 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 136.667-106 chr8 86544722 86544936 + 0.833333 NA exon (NM_003909, exon 9 of 17) exon (NM_003909, exon 9 of 17) 30394 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 157.167-54 chr6 131286955 131287378 + 0.833333 NA Intergenic Intergenic 36762 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 167.667-27 chr14 72282102 72282398 + 0.833333 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -234570 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 176-37 chr5 93400487 93400881 + 0.833333 NA Intergenic Intergenic 170659 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 224-12 chr14 50905299 50905754 + 0.833333 NA TTS (NM_181533) TTS (NM_181533) 33366 NM_181533 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 189.333-37 chr4 14679615 14679898 + 0.833333 NA intron (NR_126435, intron 3 of 6) intron (NR_126435, intron 3 of 6) 208413 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 124 chr1 42090366 42090575 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -54536 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 269.834 chr1 56003856 56004617 + 0.833333 NA Intergenic Intergenic 59149 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 260.167-16 chr9 95421761 95422224 + 0.833333 NA Intergenic MER63A|DNA|hAT-Blackjack -41617 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 196-13 chr10 110913317 110913666 + 0.833333 NA intron (NM_001195304, intron 2 of 4) intron (NM_001195304, intron 2 of 4) 5445 NM_001195306 92482 Hs.232543 NM_001195304 ENSG00000214413 BBIP1 BBIP10|BBS18|NCRNA00081|bA348N5.3 BBSome interacting protein 1 protein-coding 229-11 chr14 33612517 33612834 + 0.833333 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) -96262 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 161.333-20 chr14 27252471 27252839 + 0.833333 NA Intergenic Intergenic 344013 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 138.5-43 chr2 186759265 186759466 + 0.833333 NA intron (NM_177454, intron 6 of 7) L1MA3|LINE|L1 65305 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 209.833-10 chr14 48963910 48964218 + 0.833333 NA Intergenic Tigger15a|DNA|TcMar-Tigger 622316 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 155.333-79 chr4 160888784 160889019 + 0.833333 NA Intergenic Intergenic -1111117 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 121.5-4 chr1 159076039 159076298 + 0.833333 NA intron (NM_004833, intron 1 of 5) intron (NM_004833, intron 1 of 5) 598 NM_004833 9447 Hs.733411 NM_004833 ENSG00000163568 AIM2 PYHIN4 absent in melanoma 2 protein-coding 115.333-14 chr11 93146303 93146495 + 0.833333 NA 3' UTR (NM_001286139, exon 11 of 11) 3' UTR (NM_001286139, exon 11 of 11) 51027 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 151.833-37 chr21 23802908 23803217 + 0.833333 NA Intergenic L1MEd|LINE|L1 -418227 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 253.667-12 chr4 62299236 62299708 + 0.833333 NA Intergenic L1MD2|LINE|L1 -137707 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 200.833-34 chr7 52536078 52536414 + 0.833333 NA Intergenic Intergenic -499387 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 214-33 chr5 11655914 11656346 + 0.833333 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -67064 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 121.667-103 chr8 100409101 100409408 + 0.833333 NA Intergenic MER53|DNA|hAT 26491 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 193.333-41 chr4 164472307 164472631 + 0.833333 NA Intergenic L1MA2|LINE|L1 -89214 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 178.667-46 chr4 73078901 73079153 + 0.833333 NA intron (NM_032217, intron 30 of 33) intron (NM_032217, intron 30 of 33) -9268 NM_001300729 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 164.833-8 chr10 74019145 74019576 + 0.833333 NA intron (NM_014000, intron 1 of 21) L1PA8|LINE|L1 21244 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 223.667-13 chr18 1571353 1571847 + 0.833333 NA Intergenic Intergenic -211971 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 138.167-38 chr18 69423243 69423767 + 0.833333 NA intron (NM_152721, intron 1 of 7) L1ME3Cz|LINE|L1 22617 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 332.5-8 chr3 184927127 184927986 + 0.833333 NA intron (NM_001009921, intron 30 of 46) intron (NM_001009921, intron 30 of 46) 115049 NR_146116 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 172.833-48 chr6 137859085 137859313 + 0.833333 NA intron (NR_049793, intron 3 of 3) intron (NR_049793, intron 3 of 3) -8060 NM_001270508 7128 Hs.211600 NM_006290 ENSG00000118503 TNFAIP3 A20|AISBL|OTUD7C|TNFA1P2 TNF alpha induced protein 3 protein-coding 166.167-65 chr8 127731313 127731853 + 0.833333 NA intron (NR_117101, intron 1 of 1) intron (NR_117101, intron 1 of 1) 2384 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 271.167-17 chr8 55323048 55323556 + 0.833333 NA intron (NM_052898, intron 1 of 2) L1ME1|LINE|L1 132019 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 210.167-3 chr1 90365557 90365963 + 0.833333 NA Intergenic L1MEc|LINE|L1 -291990 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 266.833-6 chr8 78133299 78133827 + 0.833333 NA Intergenic Intergenic -382777 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 155.167-24 chr2 81297826 81298176 + 0.833333 NA Intergenic Tigger4|DNA|TcMar-Tigger 168945 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 175.667-31 chr2 83539625 83539951 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR 16974 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 208.167-20 chr5 27814140 27814596 + 0.833333 NA Intergenic Intergenic 342076 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 176.667-20 chr12 52381938 52382298 + 0.833333 NA intron (NM_033045, intron 4 of 8) intron (NM_033045, intron 4 of 8) 3534 NM_033045 3890 Hs.272336 NM_033045 ENSG00000161849 KRT84 HB4|KRTHB4 keratin 84 protein-coding 149.667-21 chr14 58950944 58951306 + 0.833333 NA intron (NR_110547, intron 4 of 5) L1MEc|LINE|L1 122837 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 243.5-12 chr16 64718570 64719099 + 0.833333 NA Intergenic LTR8|LTR|ERV1 403229 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 270.833-9 chr18 62855686 62856130 + 0.833333 NA intron (NM_194449, intron 3 of 16) L2a|LINE|L2 140367 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 128.5-7 chr1 198051869 198052135 + 0.833333 NA Intergenic L1MA2|LINE|L1 -104996 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 234.333-2 chr1 198150393 198150767 + 0.833333 NA Intergenic Intergenic -6418 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 215.667-35 chr4 129087252 129087678 + 0.833333 NA intron (NM_001300898, intron 1 of 5) L1MEc|LINE|L1 6074 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 139.667-12 chr10 5521987 5522302 + 0.833333 NA intron (NR_120497, intron 1 of 2) intron (NR_120497, intron 1 of 2) -2817 NM_005185 810 Hs.239600 NM_005185 ENSG00000178363 CALML3 CLP calmodulin like 3 protein-coding 149.833-29 chr3 182645208 182645583 + 0.833333 NA Intergenic Intergenic -138271 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 181.333-34 chr2 202805002 202805537 + 0.833333 NA intron (NM_001288623, intron 9 of 12) L1MB7|LINE|L1 23965 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 115.5-90 chr6 50444584 50444838 + 0.833333 NA Intergenic Intergenic -268833 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 190.5-43 chr5 103512310 103512821 + 0.833333 NA Intergenic Intergenic 29420 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 143.5-19 chr14 32812363 32812553 + 0.833333 NA intron (NM_004274, intron 12 of 13) intron (NM_004274, intron 12 of 13) -126421 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 297.166-2 chr11 21806014 21806549 + 0.833333 NA Intergenic Intergenic -386804 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 115-58 chr4 109507535 109507703 + 0.833333 NA intron (NM_001300813, intron 8 of 24) intron (NM_001300813, intron 8 of 24) 18921 NR_030302 693161 NR_030302 ENSG00000207988 MIR576 MIRN576|hsa-mir-576 microRNA 576 ncRNA 145.167-45 chr3 43623765 43624071 + 0.833333 NA intron (NM_001346469, intron 1 of 11) intron (NM_001346469, intron 1 of 11) -1841 NM_001346465 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 135.5-3 chr1 65376125 65376421 + 0.833333 NA intron (NM_001256864, intron 4 of 18) L1MA4|LINE|L1 -44379 NM_001003680 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 211.167-5 chr10 28848836 28849098 + 0.833333 NA intron (NM_001278522, intron 3 of 4) AluSz|SINE|Alu 2559 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 228.667-2 chr1 91990460 91990761 + 0.833333 NA intron (NM_001726, intron 12 of 18) intron (NM_001726, intron 12 of 18) 38458 NM_001726 676 Hs.482520 NM_001726 ENSG00000137948 BRDT BRD6|CT9|SPGF21 bromodomain testis associated protein-coding 152-4 chr1 106841761 106842081 + 0.833333 NA Intergenic Intergenic 23682 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 161.667-87 chr8 85042651 85043108 + 0.833333 NA Intergenic L2c|LINE|L2 -64359 NM_001349637 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 115.333-46 chr18 34385516 34385899 + 0.833333 NA Intergenic Intergenic -107583 NM_032975 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 175.833-37 chr5 74366289 74366796 + 0.833333 NA Intergenic Intergenic 44056 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 294.833-5 chr5 172963084 172963507 + 0.833333 NA intron (NM_001317982, intron 2 of 3) AluSx|SINE|Alu 3835 NM_001317982 51121 Hs.546390 NM_016093 ENSG00000037241 RPL26L1 RPL26P1 ribosomal protein L26 like 1 protein-coding 180.5 chr1 44449758 44450126 + 0.833333 NA intron (NM_001319957, intron 1 of 13) AluSp|SINE|Alu 25941 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 120.833-12 chr14 68042344 68042557 + 0.833333 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 218858 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 118-7 chr1 108108183 108108376 + 0.833333 NA Intergenic MIRb|SINE|MIR 84556 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 130-63 chr20 43332992 43333199 + 0.833333 NA Intergenic L2b|LINE|L2 -124801 NR_034009 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 209-45 chrX 56735873 56736185 + 0.833333 NA TTS (NR_002308) TTS (NR_002308) 1555 NR_002308 442454 Hs.663220 NR_002308 UQCRBP1 - ubiquinol-cytochrome c reductase binding protein pseudogene 1 pseudo 127.667-22 chr12 29106192 29106493 + 0.833333 NA Intergenic Intergenic -42936 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 376.833-2 chr22 28497157 28497752 + 0.833333 NA intron (NM_001145418, intron 2 of 22) MER5B|DNA|hAT-Charlie 37585 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 201.667-21 chr2 150372525 150372937 + 0.833333 NA Intergenic Intergenic 114964 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 164.5-22 chr16 2822661 2822995 + 0.833333 NA Intergenic Intergenic 5591 NM_144956 10942 Hs.72026 NM_006799 ENSG00000007038 PRSS21 ESP-1|ESP1|TEST1|TESTISIN serine protease 21 protein-coding 159.667-86 chr7 104342037 104342263 + 0.833333 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 13494 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 184.333-30 chr2 170628637 170628893 + 0.833333 NA intron (NM_001083615, intron 31 of 33) intron (NM_001083615, intron 31 of 33) 85802 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 141.833-45 chr8 62664035 62664233 + 0.833333 NA intron (NM_001304533, intron 3 of 6) L2a|LINE|L2 -313727 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 163.333-38 chr2 16984383 16984757 + 0.833333 NA Intergenic L1MB7|LINE|L1 -318736 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 133.167-67 chr8 113835027 113835292 + 0.833333 NA Intergenic Intergenic -398220 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 144.5-86 chr8 79777076 79777320 + 0.833333 NA intron (NR_110954, intron 4 of 5) intron (NR_110954, intron 4 of 5) 9056 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 234.5-24 chr4 180610989 180611405 + 0.833333 NA Intergenic Intergenic 547952 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 144.167-37 chr2 151241733 151241997 + 0.833333 NA Intergenic AluJb|SINE|Alu 19998 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 184.167-14 chr11 4988423 4988667 + 0.833333 NA intron (NM_021801, intron 1 of 5) ORSL|DNA|hAT-Tip100 354 NM_021801 56547 Hs.204732 NM_021801 ENSG00000167346 MMP26 - matrix metallopeptidase 26 protein-coding 158.5-21 chr14 35146731 35146973 + 0.833333 NA intron (NM_014672, intron 4 of 7) AluJr4|SINE|Alu 24300 NM_014672 9692 Hs.458487 NM_014672 ENSG00000100890 PRORP KIAA0391|MRPP3 protein only RNase P catalytic subunit protein-coding 130.333-38 chr16 55268616 55268846 + 0.833333 NA Intergenic Intergenic -55828 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 147.167-19 chr12 12214761 12214981 + 0.833333 NA intron (NM_002336, intron 2 of 22).2 LOR1b|LTR|ERV1 52173 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 261.333-15 chr4 102814669 102815116 + 0.833333 NA intron (NM_181893, intron 1 of 6) intron (NM_181893, intron 1 of 6) 10968 NM_001300795 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 159.833-25 chr18 35173475 35173767 + 0.833333 NA Intergenic Intergenic -67413 NM_032347 84307 Hs.591061 NM_032347 ENSG00000186812 ZNF397 ZNF47|ZSCAN15 zinc finger protein 397 protein-coding 116.667-54 chr2 66489485 66489920 + 0.833333 NA intron (NM_002398, intron 7 of 12) intron (NM_002398, intron 7 of 12) -49372 NR_046625 100873998 Hs.734698 NR_046625 ENSG00000230749 MEIS1-AS2 MEIS1-AS1 MEIS1 antisense RNA 2 ncRNA 181.5-57 chr7 89997032 89997278 + 0.833333 NA intron (NR_110029, intron 2 of 2) L2a|LINE|L2 -122245 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 254.667-8 chr14 71479356 71479873 + 0.833333 NA intron (NM_001284247, intron 1 of 23) AluJo|SINE|Alu -8247 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 186.167-5 chr10 1866524 1866977 + 0.833333 NA Intergenic Intergenic -129225 NM_018702 105 Hs.586663 NM_018702 ENSG00000185736 ADARB2 ADAR3|RED2 adenosine deaminase RNA specific B2 (inactive) protein-coding 178.667-18 chr15 61976177 61976478 + 0.833333 NA intron (NM_001018088, intron 24 of 81) L1ME2|LINE|L1 84120 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 164-40 chr3 88094950 88095303 + 0.833333 NA intron (NM_001350135, intron 2 of 6) intron (NM_001350135, intron 2 of 6) 35871 NM_001350134 55279 Hs.591650 NM_018293 ENSG00000175105 ZNF654 - zinc finger protein 654 protein-coding 113.833-73 chr5 136806530 136806696 + 0.833333 NA Intergenic L1M6|LINE|L1 -321584 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 151.667-76 chr6 119934404 119934859 + 0.833333 NA Intergenic Intergenic -80548 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 132.5-31 chr14 79204825 79205253 + 0.833333 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) 5057 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 178.833-20 chr2 152486788 152487303 + 0.833333 NA intron (NM_052905, intron 1 of 25) L2a|LINE|L2 151871 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 156-34 chr15 71522263 71522582 + 0.833333 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -24814 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 210-30 chr5 131932664 131932939 + 0.833333 NA intron (NM_001303622, intron 5 of 12) intron (NM_001303622, intron 5 of 12) 12862 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 157-8 chr1 220311347 220311536 + 0.833333 NA Intergenic AluY|SINE|Alu -38988 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 184.833-27 chr5 125195760 125196043 + 0.833333 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 159070 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 124.833-60 chr3 45745327 45745603 + 0.833333 NA TTS (NM_014016) TTS (NM_014016) 51071 NM_020208 54716 Hs.413095 NM_020208 ENSG00000163817 SLC6A20 SIT1|XT3|Xtrp3 solute carrier family 6 member 20 protein-coding 226.833-4 chr10 106152009 106152567 + 0.833333 NA intron (NR_134330, intron 1 of 4) L1MA9|LINE|L1 12123 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 193.5-20 chr18 66957390 66957719 + 0.833333 NA Intergenic L1MB7|LINE|L1 -124030 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 133.167-27 chr18 74908844 74909059 + 0.833333 NA intron (NM_017757, intron 6 of 7) intron (NM_017757, intron 6 of 7) 277988 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 207.833-30 chr5 151930173 151930579 + 0.833333 NA Intergenic Intergenic -5525 NM_001146040 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 193.167-41 chr9 70459494 70459778 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR -44979 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 153.667-84 chr9 79638824 79639082 + 0.833333 NA intron (NM_001351547, intron 5 of 18) intron (NM_001351547, intron 5 of 18) 65776 NM_001351546 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 165.667-77 chr9 27832387 27832610 + 0.833333 NA Intergenic L1PA10|LINE|L1 -258632 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 129.167 chr1 64549157 64549453 + 0.833333 NA intron (NM_001293274, intron 1 of 25) intron (NM_001293274, intron 1 of 25) -30542 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 243.167-11 chr4 107097259 107097559 + 0.833333 NA Intergenic Intergenic -61096 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 222.167-3 chr1 230258815 230259112 + 0.833333 NA intron (NM_004481, intron 11 of 15) intron (NM_004481, intron 11 of 15) 167369 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 346-3 chr2 73842554 73843013 + 0.833333 NA intron (NR_148670, intron 3 of 12) L2a|LINE|L2 13816 NM_001353976 10617 Hs.469018 NM_006463 ENSG00000124356 STAMBP AMSH|MICCAP STAM binding protein protein-coding 134.333-51 chr18 78481060 78481326 + 0.833333 NA Intergenic Intergenic -487466 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 224.5-7 chr14 47596082 47596758 + 0.833333 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 78534 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 122.5-2 chr1 50874358 50874560 + 0.833333 NA intron (NM_007051, intron 1 of 18) AluJr4|SINE|Alu 85808 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 140.167-60 chr6 33886539 33886773 + 0.833333 NA Intergenic Intergenic 10251 NR_038989 100507584 Hs.547104 NR_038989 ENSG00000249346 LINC01016 - long intergenic non-protein coding RNA 1016 ncRNA 129-88 chr6 98963913 98964165 + 0.833333 NA Intergenic L1M5|LINE|L1 -16033 NM_012160 26235 Hs.536850 NM_012160 ENSG00000112234 FBXL4 FBL4|FBL5|MTDPS13 F-box and leucine rich repeat protein 4 protein-coding 208.167-25 chr5 167213687 167213998 + 0.833333 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) -45441 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 288.167 chr1 45139774 45140222 + 0.833333 NA intron (NM_020883, intron 1 of 13) L1ME1|LINE|L1 66607 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 172.833-41 chr4 176118245 176118485 + 0.833333 NA intron (NM_170710, intron 4 of 30) L3b|LINE|CR1 52524 NM_001350727 116966 Hs.532056 NM_170710 ENSG00000150627 WDR17 - WD repeat domain 17 protein-coding 229.167-18 chr17 1808414 1808826 + 0.833333 NA intron (NM_052928, intron 3 of 10) intron (NM_052928, intron 3 of 10) 21282 NM_052928 114826 Hs.514602 NM_052928 ENSG00000186532 SMYD4 ZMYND21 SET and MYND domain containing 4 protein-coding 209.833 chr1 22533049 22533392 + 0.833333 NA Intergenic Intergenic -30269 NM_020526 2046 Hs.283613 NM_020526 ENSG00000070886 EPHA8 EEK|EK3|HEK3 EPH receptor A8 protein-coding 152-8 chr1 188990194 188990513 + 0.833333 NA Intergenic MER4D|LTR|ERV1 1485657 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 269.167-5 chr15 33994124 33994672 + 0.833333 NA intron (NM_001320917, intron 1 of 1) MER1A|DNA|hAT-Charlie 25901 NM_001320917 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 154.5-15 chr12 23770682 23771055 + 0.833333 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) 178802 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 238.167-10 chr17 72327181 72327692 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -15375 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 214.667-9 chr11 40566185 40566498 + 0.833333 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -273211 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 182.667-37 chr20 54041055 54041540 + 0.833333 NA intron (NM_001366297, intron 3 of 8) L1MB7|LINE|L1 17723 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 138.167-29 chr16 86962448 86962659 + 0.833333 NA Intergenic Intergenic -95231 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 117.833-69 chr6 69004992 69005166 + 0.833333 NA intron (NM_001704, intron 11 of 31) intron (NM_001704, intron 11 of 31) 369797 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 200.5-2 chr1 99026707 99027169 + 0.833333 NA intron (NR_033940, intron 1 of 2) MLT1F2|LTR|ERVL-MaLR -22077 NM_001037317 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 121.833-34 chr2 106361490 106361865 + 0.833333 NA Intergenic L1MC4|LINE|L1 -8068 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 267-13 chr8 86140087 86140641 + 0.833333 NA intron (NM_152565, intron 3 of 7) intron (NM_152565, intron 3 of 7) 41454 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 130.167-55 chr4 103144283 103144690 + 0.833333 NA exon (NM_001286734, exon 32 of 47) exon (NM_001286734, exon 32 of 47) -44652 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 180-41 chr5 73485361 73485726 + 0.833333 NA Intergenic ERVL-B4-int|LTR|ERVL -12577 NR_126410 104355294 Hs.127927 NR_126410 ENSG00000251324 LINC01386 - long intergenic non-protein coding RNA 1386 ncRNA 139.667-48 chr2 2967351 2967601 + 0.833333 NA intron (NR_110228, intron 3 of 6) intron (NR_110228, intron 3 of 6) 158550 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 186-38 chr4 90315822 90316213 + 0.833333 NA intron (NM_207491, intron 3 of 7) intron (NM_207491, intron 3 of 7) 80986 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 154-49 chr22 45338061 45338368 + 0.833333 NA intron (NM_001104595, intron 9 of 9) HAL1ME|LINE|L1 19771 NM_001349913 55007 Hs.265018 NM_017911 ENSG00000100376 FAM118A C22orf8 family with sequence similarity 118 member A protein-coding 146-12 chr11 129349875 129350130 + 0.833333 NA Intergenic L1MC4|LINE|L1 -25846 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 256.5 chr1 179172388 179172889 + 0.833333 NA intron (NM_007314, intron 1 of 11) intron (NM_007314, intron 1 of 11) -29562 NM_001136000 27 Hs.159472 NM_005158 ENSG00000143322 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding 202.333-20 chr18 7761472 7761783 + 0.833333 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 194311 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 121.667-102 chr8 87418420 87418694 + 0.833333 NA Intergenic L1MB7|LINE|L1 455458 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 172.667-40 chr2 164722538 164722846 + 0.833333 NA intron (NM_001365670, intron 5 of 13) MIRb|SINE|MIR -34915 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 147-13 chr12 8639177 8639477 + 0.833333 NA Intergenic LTR47A|LTR|ERVL 23499 NR_123734 8076 Hs.512842 NM_003480 ENSG00000197614 MFAP5 AAT9|MAGP-2|MAGP2|MFAP-5|MP25 microfibril associated protein 5 protein-coding 290.5-15 chr7 40889708 40890212 + 0.833333 NA Intergenic L2a|LINE|L2 89979 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 125-101 chr8 133670220 133670471 + 0.833333 NA intron (NR_134462, intron 1 of 2) L1MD3|LINE|L1 13721 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 177.833-28 chr4 6462554 6463108 + 0.833333 NA intron (NM_001206994, intron 2 of 9) L1MC5a|LINE|L1 9783 NM_020416 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 154.667-6 chr1 203977261 203977616 + 0.833333 NA Intergenic Intergenic 63826 NR_027902 284573 Hs.406979 NR_027902 ENSG00000176754 LINC00303 C1orf157|NCRNA00303 long intergenic non-protein coding RNA 303 ncRNA 161.5-43 chr6 169586156 169586543 + 0.833333 NA intron (NM_182552, intron 23 of 25) Tigger2|DNA|TcMar-Tigger 115680 NM_182552 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 184.5-42 chr6 38696419 38696864 + 0.833333 NA intron (NM_006708, intron 1 of 5) MLT1A0|LTR|ERVL-MaLR 6504 NM_006708 2739 Hs.268849 NM_006708 ENSG00000124767 GLO1 GLOD1|GLYI|HEL-S-74 glyoxalase I protein-coding 216.333-25 chr20 55231521 55231886 + 0.833333 NA Intergenic Intergenic -191340 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 121.167-3 chr1 58565375 58565637 + 0.833333 NA Intergenic Intergenic 11746 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor associated calcium signal transducer 2 protein-coding 118-20 chr11 111631625 111631842 + 0.833333 NA intron (NM_015191, intron 3 of 14) intron (NM_015191, intron 3 of 14) 29284 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 157.667-68 chr7 95036064 95036391 + 0.833333 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 126329 NM_001166162 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 272-3 chr14 78605697 78606159 + 0.833333 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 202209 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 165-25 chr2 52519828 52520141 + 0.833333 NA Intergenic Intergenic 149336 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 230.833-18 chr5 61219820 61220359 + 0.833333 NA intron (NR_109908, intron 3 of 3) intron (NR_109908, intron 3 of 3) 44840 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 159.333-7 chr1 228135664 228136007 + 0.833333 NA Intergenic MER31-int|LTR|ERV1 -4249 NM_001242839 2987 Hs.376933 NM_000858 ENSG00000143774 GUK1 GMK guanylate kinase 1 protein-coding 116.167-53 chr4 69833128 69833330 + 0.833333 NA Intergenic MIRb|SINE|MIR 26916 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 195.167-15 chr2 72785567 72785933 + 0.833333 NA intron (NR_135774, intron 1 of 19) THE1A-int|LTR|ERVL-MaLR 40283 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 129.667-53 chr2 123958236 123958501 + 0.833333 NA Intergenic L2c|LINE|L2 66806 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 145-72 chr5 155745416 155745761 + 0.833333 NA Intergenic L1ME3F|LINE|L1 -581169 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 113.5-87 chr8 78579886 78580125 + 0.833333 NA intron (NM_006823, intron 2 of 3) intron (NM_006823, intron 2 of 3) -21502 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 117.667-122 chr8 101542809 101543022 + 0.833333 NA intron (NM_001330593, intron 1 of 15) MSTD|LTR|ERVL-MaLR 50476 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 125.833-94 chr8 123294218 123294393 + 0.833333 NA Intergenic AluJb|SINE|Alu -18764 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 206.5 chr1 11642956 11643542 + 0.833333 NA Intergenic Intergenic -11158 NM_001304791 93611 Hs.556006 NM_033182 ENSG00000132879 FBXO44 FBG3|FBX30|FBX6A|Fbx44|Fbxo6a F-box protein 44 protein-coding 126.167-67 chr4 125979360 125979637 + 0.833333 NA Intergenic L1MC1|LINE|L1 472239 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 113.5-33 chr12 106252740 106252957 + 0.833333 NA Intergenic Intergenic -4828 NM_006825 10970 Hs.74368 NM_006825 ENSG00000136026 CKAP4 CLIMP-63|ERGIC-63|p63 cytoskeleton associated protein 4 protein-coding 168-72 chr7 33768682 33768977 + 0.833333 NA Intergenic Intergenic -136086 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 130.5-70 chr6 84135491 84135850 + 0.833333 NA intron (NM_001286206, intron 25 of 26) AluSz|SINE|Alu 91973 NM_014895 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 167.167-24 chr12 129332324 129332692 + 0.833333 NA intron (NM_133448, intron 4 of 8) intron (NM_133448, intron 4 of 8) 123907 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 118.333-53 chr2 150120377 150120674 + 0.833333 NA Intergenic Intergenic 136482 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 209.167-16 chr17 68574567 68575042 + 0.833333 NA intron (NM_017565, intron 1 of 10) MLT1D|LTR|ERVL-MaLR -16377 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 117.833-67 chr6 56749588 56749861 + 0.833333 NA intron (NM_001144770, intron 2 of 94) intron (NM_001144770, intron 2 of 94) 93941 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 179-23 chr2 69350442 69350900 + 0.833333 NA intron (NM_002056, intron 8 of 18) AluSx1|SINE|Alu 36556 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 119.5-97 chr7 31893638 31893962 + 0.833333 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 176607 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 309.667-3 chr5 153458207 153458708 + 0.833333 NA Intergenic MIR3|SINE|MIR -32067 NM_001258019 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 214.667-21 chr21 29281996 29282419 + 0.833333 NA intron (NR_027072, intron 1 of 1) L1MEc|LINE|L1 -16715 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 171.333-62 chr8 101050493 101050794 + 0.833333 NA Intergenic Intergenic -1411 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 290.167-16 chr8 130782425 130782888 + 0.833333 NA intron (NM_001115, intron 17 of 17) intron (NM_001115, intron 17 of 17) 258253 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 148.667-6 chr1 222943501 222943707 + 0.833333 NA intron (NM_001369594, intron 2 of 7) intron (NM_001369594, intron 2 of 7) 15180 NM_001369594 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 219.667-18 chr21 28509526 28509889 + 0.833333 NA Intergenic MER5B|DNA|hAT-Charlie -29611 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 290-7 chr4 81547751 81548171 + 0.833333 NA Intergenic MIR3|SINE|MIR -76054 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 199.5-30 chr4 84556223 84556531 + 0.833333 NA Intergenic AluSx|SINE|Alu -26750 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 192.833-5 chr1 176621854 176622310 + 0.833333 NA intron (NM_021936, intron 3 of 4) intron (NM_021936, intron 3 of 4) 158907 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 183.167-62 chrX 50168244 50168558 + 0.833333 NA Intergenic L1MB8|LINE|L1 31971 NM_139289 8852 Hs.97633 NM_003886 ENSG00000147081 AKAP4 AKAP 82|AKAP-4|AKAP82|CT99|FSC1|HI|PRKA4|hAKAP82|p82 A-kinase anchoring protein 4 protein-coding 179.167-21 chr18 2048783 2049508 + 0.833333 NA Intergenic Intergenic 522360 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 204.833-26 chr5 122665267 122665807 + 0.833333 NA intron (NR_109881, intron 8 of 11) intron (NR_109881, intron 8 of 11) 65023 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 149.5-50 chr4 115790072 115790281 + 0.833333 NA Intergenic L1MB3|LINE|L1 -509549 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 318.667 chr12 13356883 13357530 + 0.833333 NA Intergenic Intergenic 19539 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 169.667-65 chr6 163880284 163880613 + 0.833333 NA Intergenic L1M2|LINE|L1 -208964 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 161.167-46 chr5 82218337 82218747 + 0.833333 NA intron (NM_031482, intron 5 of 7) intron (NM_031482, intron 5 of 7) 59812 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 148.833-64 chr9 2986888 2987232 + 0.833333 NA Intergenic Intergenic -142965 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 251-19 chr4 177075414 177075771 + 0.833333 NA Intergenic LTR28B|LTR|ERV1 199890 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 267.5-5 chr14 48716965 48717358 + 0.833333 NA Intergenic L1PA15|LINE|L1 869219 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 151.667-90 chr8 131908596 131908867 + 0.833333 NA intron (NM_001323555, intron 1 of 22) intron (NM_001323555, intron 1 of 22) 4638 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 156.5-21 chr11 92702685 92703050 + 0.833333 NA intron (NM_001008781, intron 3 of 24) intron (NM_001008781, intron 3 of 24) 212761 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 340.5 chr1 215225568 215226685 + 0.833333 NA intron (NM_001017424, intron 6 of 6) intron (NM_001017424, intron 6 of 6) 143389 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 144-43 chr21 29785222 29785767 + 0.833333 NA intron (NM_000830, intron 1 of 16) AluSx|SINE|Alu 37319 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 221.833-12 chr2 31807594 31808118 + 0.833333 NA Intergenic L1M4|LINE|L1 -3876 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 152.833-8 chr10 54243684 54244038 + 0.833333 NA intron (NM_001354411, intron 8 of 34) intron (NM_001354411, intron 8 of 34) -242369 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 119.333-83 chr5 51674537 51674714 + 0.833333 NA Intergenic L2b|LINE|L2 291177 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 212.333-35 chr7 32008621 32008907 + 0.833333 NA intron (NM_001322059, intron 3 of 17) Charlie23a|DNA|hAT-Charlie 61643 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 172.667-46 chr21 28269928 28270242 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR -41418 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 145.667-6 chr1 147505328 147505653 + 0.833333 NA intron (NR_038423, intron 3 of 3) MIRb|SINE|MIR 12385 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 141.5-87 chr8 142373684 142373965 + 0.833333 NA intron (NM_001366903, intron 1 of 9) intron (NM_001366903, intron 1 of 9) 29358 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 136.833-42 chr3 79655858 79656354 + 0.833333 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 111892 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 237.167-11 chr2 182954942 182955368 + 0.833333 NA intron (NM_013436, intron 20 of 30) intron (NM_013436, intron 20 of 30) 83302 NM_013436 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 282-12 chr2 30242235 30242702 + 0.833333 NA intron (NM_030915, intron 2 of 2) AluSz6|SINE|Alu 10934 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - LBH regulator of WNT signaling pathway protein-coding 124.5-16 chr12 13575998 13576208 + 0.833333 NA intron (NM_000834, intron 9 of 12) intron (NM_000834, intron 9 of 12) -199358 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 136-25 chr15 73864264 73864505 + 0.833333 NA Intergenic L1MEf|LINE|L1 -9180 NM_001286434 161514 Hs.124512 NM_153356 ENSG00000167139 TBC1D21 MgcRabGAP TBC1 domain family member 21 protein-coding 200.667-22 chr14 57305403 57305716 + 0.833333 NA Intergenic Intergenic 36588 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 125.333-37 chr13 85293632 85293811 + 0.833333 NA Intergenic Intergenic -69882 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 129.667-37 chr14 78231262 78231595 + 0.833333 NA intron (NR_073547, intron 1 of 20) intron (NR_073547, intron 1 of 20) 61055 NR_073547 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 199.833 chr10 43952551 43952833 + 0.833333 NA intron (NR_033846, intron 5 of 7) L1MB8|LINE|L1 40290 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 193.5-10 chr12 7684042 7684530 + 0.833333 NA Intergenic AluJb|SINE|Alu 11489 NM_020634 9573 Hs.86232 NM_020634 ENSG00000184344 GDF3 KFS3|MCOP7|MCOPCB6 growth differentiation factor 3 protein-coding 191.833-33 chr7 49824782 49825123 + 0.833333 NA intron (NR_136188, intron 2 of 3) L1M4a1|LINE|L1 49619 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 170.667-60 chr5 126259923 126260382 + 0.833333 NA Intergenic L1M2|LINE|L1 25023 NR_105039 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 126-43 chr2 165719024 165719327 + 0.833333 NA Intergenic Intergenic 75072 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 188.5-38 chr22 47517647 47518000 + 0.833333 NA Intergenic L1MEg|LINE|L1 -30712 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 257.833-2 chr11 88781199 88782015 + 0.833333 NA intron (NM_001143831, intron 2 of 8) intron (NM_001143831, intron 2 of 8) 266465 NM_001143831 2915 Hs.147361 NM_000842 ENSG00000168959 GRM5 GPRC1E|MGLUR5|PPP1R86|mGlu5 glutamate metabotropic receptor 5 protein-coding 142.833-18 chr15 67264732 67264942 + 0.833333 NA intron (NM_001031715, intron 3 of 20) (CTCT)n|Simple_repeat|Simple_repeat -9639 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 169.5-75 chr8 120516043 120516377 + 0.833333 NA intron (NM_022045, intron 18 of 21) intron (NM_022045, intron 18 of 21) 70791 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 139.833-67 chr6 66471324 66471520 + 0.833333 NA Intergenic Intergenic 683543 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 157-89 chrX 47163187 47163546 + 0.833333 NA intron (NM_152856, intron 2 of 22) L1MD3|LINE|L1 18145 NM_001204467 8241 Hs.401509 NM_005676 ENSG00000182872 RBM10 DXS8237E|GPATC9|GPATCH9|S1-1|TARPS|ZRANB5 RNA binding motif protein 10 protein-coding 199.167-12 chr13 99274294 99274679 + 0.833333 NA intron (NR_026644, intron 4 of 8) AluJo|SINE|Alu -16058 NM_005292 2841 Hs.741589 NM_005292 ENSG00000125245 GPR18 - G protein-coupled receptor 18 protein-coding 166.167-58 chr7 38587385 38587622 + 0.833333 NA intron (NM_001635, intron 1 of 20) intron (NM_001635, intron 1 of 20) 43870 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 167-40 chr3 114802533 114802938 + 0.833333 NA intron (NM_001348805, intron 4 of 10) intron (NM_001348805, intron 4 of 10) -43628 NM_001164345 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 209.333-15 chr2 28534074 28534360 + 0.833333 NA intron (NM_153021, intron 9 of 57) L1ME3Cz|LINE|L1 -32140 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 162.333-47 chr3 29869009 29869406 + 0.833333 NA intron (NM_001003792, intron 7 of 13) intron (NM_001003792, intron 7 of 13) 64949 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 218-25 chr2 117263305 117263700 + 0.833333 NA Intergenic L1M4c|LINE|L1 -551189 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 140.333-81 chr7 86980454 86980867 + 0.833333 NA intron (NM_001142749, intron 1 of 21) L2c|LINE|L2 -14761 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 160.167-31 chr20 1226968 1227340 + 0.833333 NA intron (NM_001136566, intron 1 of 13) AluSx1|SINE|Alu 1034 NM_001136566 642636 Hs.713451 NM_001136566 ENSG00000244588 RAD21L1 RAD21L|dJ545L17.2 RAD21 cohesin complex component like 1 protein-coding 138.333-101 chr7 113603986 113604198 + 0.833333 NA Intergenic L1MC5|LINE|L1 314917 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 181.667-49 chr5 65685253 65685614 + 0.833333 NA exon (NM_019072, exon 6 of 11) exon (NM_019072, exon 6 of 11) 36676 NM_019072 54557 Hs.482301 NM_019072 ENSG00000197860 SGTB SGT2 small glutamine rich tetratricopeptide repeat containing beta protein-coding 126-49 chr2 225095336 225095747 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -53073 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 115.333-61 chr20 19152775 19152958 + 0.833333 NA Intergenic L1MC2|LINE|L1 -59776 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 218-17 chr16 11891316 11891731 + 0.833333 NA intron (NM_002094, intron 5 of 14) AluSq2|SINE|Alu 24433 NM_001130006 2935 Hs.528780 NM_002094 ENSG00000103342 GSPT1 551G9.2|ETF3A|GST1|eRF3a G1 to S phase transition 1 protein-coding 175.333-30 chr21 25736306 25736688 + 0.833333 NA promoter-TSS (NM_001685) promoter-TSS (NM_001685) -843 NM_001003697 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 150.833-17 chr17 60284666 60285184 + 0.833333 NA intron (NM_032582, intron 5 of 33) MER31B|LTR|ERV1 -53280 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 162.667-83 chr8 87765272 87765639 + 0.833333 NA Intergenic Intergenic 108560 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 195.5-14 chr12 124988413 124988769 + 0.833333 NA intron (NM_032656, intron 1 of 26) L2|LINE|L2 540 NM_032656 57647 Hs.107382 NM_032656 ENSG00000150990 DHX37 DDX37|Dhr1 DEAH-box helicase 37 protein-coding 116.667-59 chr2 123728724 123728877 + 0.833333 NA Intergenic L1MA6|LINE|L1 296374 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 147-9 chr10 53824433 53824703 + 0.833333 NA intron (NM_001142773, intron 30 of 31) intron (NM_001142773, intron 30 of 31) -661662 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 131.5-21 chr12 40755828 40756130 + 0.833333 NA intron (NM_001256063, intron 1 of 15) L2|LINE|L2 63537 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 168.667-81 chr8 86016975 86017330 + 0.833333 NA Intergenic Intergenic 52516 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 133.833-50 chr3 150750818 150751188 + 0.833333 NA intron (NM_005067, intron 1 of 1) intron (NM_005067, intron 1 of 1) -12018 NR_121657 101928105 NR_121657 LOC101928105 - uncharacterized LOC101928105 ncRNA 128.333-18 chr10 88971289 88971600 + 0.833333 NA intron (NM_001320855, intron 1 of 8) intron (NM_001320855, intron 1 of 8) -18671 NM_001613 59 Hs.500483 NM_001613 ENSG00000107796 ACTA2 ACTSA actin alpha 2, smooth muscle protein-coding 225.667-20 chr3 60073413 60073726 + 0.833333 NA intron (NM_001320901, intron 1 of 6) L2|LINE|L2 7340 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 150.667-83 chr6 76671833 76672047 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR -78317 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 201-12 chr12 61535203 61535548 + 0.833333 NA Intergenic Intergenic 657464 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 206.333-32 chr8 53970370 53970877 + 0.833333 NA intron (NM_201437, intron 7 of 8) intron (NM_201437, intron 7 of 8) 51825 NR_109902 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 143.167-45 chr3 23443391 23443718 + 0.833333 NA intron (NM_001370225, intron 3 of 5) LTR16E2|LTR|ERVL 240227 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 122.167-13 chr12 10573388 10573592 + 0.833333 NA intron (NR_146456, intron 2 of 2) intron (NR_146456, intron 2 of 2) 20111 NR_146456 101060038 NR_146455 LINC02446 - long intergenic non-protein coding RNA 2446 ncRNA 234.5 chr1 56965006 56965558 + 0.833333 NA intron (NM_001278543, intron 1 of 12) intron (NM_001278543, intron 1 of 12) 733 NM_000066 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 137-24 chr12 94360477 94360674 + 0.833333 NA intron (NR_160431, intron 7 of 12) L1MA5|LINE|L1 98054 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 310.833 chr11 24006706 24007167 + 0.833333 NA Intergenic Intergenic -490117 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 215.5-2 chr1 180043840 180044356 + 0.833333 NA exon (NM_014810, exon 21 of 38) exon (NM_014810, exon 21 of 38) 89288 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 196-20 chr13 42493751 42494022 + 0.833333 NA Intergenic MIR|SINE|MIR -68850 NM_033012 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf TNF superfamily member 11 protein-coding 227-13 chr2 116527699 116528086 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR 1184077 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 238.5-15 chr2 135535765 135536306 + 0.833333 NA intron (NM_001282799, intron 1 of 22) intron (NM_001282799, intron 1 of 22) 4551 NM_001282799 23518 Hs.412462 NM_015361 ENSG00000048991 R3HDM1 R3HDM R3H domain containing 1 protein-coding 117.5-43 chr3 160125068 160125270 + 0.833333 NA intron (NR_108088, intron 3 of 9) MER103C|DNA|hAT-Charlie 81923 NR_108088 101928376 Hs.565865 NR_108088 ENSG00000244040 IL12A-AS1 ILAS1-AS1 IL12A antisense RNA 1 ncRNA 182.333-44 chr3 111914139 111914403 + 0.833333 NA intron (NM_001134437, intron 4 of 17) L1ME3G|LINE|L1 54444 NM_001134439 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 137.167-3 chr1 227095202 227095473 + 0.833333 NA intron (NM_001366019, intron 15 of 36) LTR90A|LTR|LTR 155043 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 208-39 chr7 130189767 130190134 + 0.833333 NA intron (NR_156699, intron 6 of 14) L1MC4|LINE|L1 15456 NM_001301163 84928 Hs.267245 NM_032842 ENSG00000146842 TMEM209 NET31 transmembrane protein 209 protein-coding 237.333-35 chr7 40886890 40887477 + 0.833333 NA Intergenic L2|LINE|L2 92756 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 147.167-4 chr1 114545344 114545659 + 0.833333 NA Intergenic Intergenic -34298 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 145.5-78 chr8 85914688 85915231 + 0.833333 NA Intergenic Intergenic -87017 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 228.833-13 chr21 34117436 34117858 + 0.833333 NA intron (NM_032476, intron 1 of 2) intron (NM_032476, intron 1 of 2) 44069 NM_006933 6526 Hs.302742 NM_006933 ENSG00000198743 SLC5A3 BCW2|SMIT|SMIT1|SMIT2 solute carrier family 5 member 3 protein-coding 140.167-51 chr5 22452664 22452848 + 0.833333 NA intron (NM_004061, intron 2 of 14) L1MA6|LINE|L1 -238906 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 166.833-40 chr7 47658650 47658883 + 0.833333 NA intron (NM_001123065, intron 2 of 2) MIRb|SINE|MIR 3522 NM_001123065 401335 Hs.520816 NM_001123065 C7orf65 - chromosome 7 open reading frame 65 protein-coding 132.167-59 chr6 65562112 65562318 + 0.833333 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 17589 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 141.333-90 chr7 33725680 33725932 + 0.833333 NA Intergenic Intergenic -179109 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 194.667-4 chr1 118116071 118116423 + 0.833333 NA intron (NM_206996, intron 3 of 48) intron (NM_206996, intron 3 of 48) 68981 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 126.5-62 chr3 157442086 157442294 + 0.833333 NA intron (NM_002852, intron 2 of 2) intron (NM_002852, intron 2 of 2) 5340 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 282.5-2 chr12 25138495 25139052 + 0.833333 NA intron (NR_147910, intron 7 of 11) L1PB1|LINE|L1 56387 NM_001352067 55259 Hs.407771 NM_018272 ENSG00000118307 CASC1 LAS1|PPP1R54 cancer susceptibility 1 protein-coding 138-106 chr8 90371884 90372206 + 0.833333 NA intron (NR_051989, intron 3 of 3) L1MDb|LINE|L1 150557 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 181.167-32 chr8 86839460 86839794 + 0.833333 NA Intergenic Intergenic -26788 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 155.5-50 chr6 102486311 102486573 + 0.833333 NA Intergenic Intergenic 1087457 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 256.5-12 chr18 71780018 71780409 + 0.833333 NA intron (NR_126324, intron 1 of 4) intron (NR_126324, intron 1 of 4) 2013 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 128.667-64 chr2 51289201 51289476 + 0.833333 NA intron (NR_135237, intron 2 of 10) MLT1E3|LTR|ERVL-MaLR 256737 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 321.333-8 chrX 148122764 148123318 + 0.833333 NA Intergenic Intergenic 141704 NM_152578 158521 Hs.128580 NM_152578 ENSG00000176988 FMR1NB CT37|NY-SAR-35|NYSAR35 FMR1 neighbor protein-coding 192.167-32 chr4 159175837 159176150 + 0.833333 NA intron (NM_001351724, intron 1 of 30) intron (NM_001351724, intron 1 of 30) -47099 NR_037459 100500881 NR_037459 ENSG00000264105 MIR3688-1 MIR3688|mir-3688-1 microRNA 3688-1 ncRNA 141.833-17 chr18 2173974 2174224 + 0.833333 NA Intergenic Intergenic 397406 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 172.5-47 chr5 13415629 13415993 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -382925 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 165-14 chr12 62334215 62334485 + 0.833333 NA intron (NR_147082, intron 6 of 21) intron (NR_147082, intron 6 of 21) 73946 NR_147082 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 114.333-90 chr3 165864195 165864588 + 0.833333 NA Intergenic MLT1F2|LTR|ERVL-MaLR -26968 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 171-61 chr8 66844231 66844461 + 0.833333 NA intron (NM_001204173, intron 16 of 18) intron (NM_001204173, intron 16 of 18) -26425 NM_001136161 157777 Hs.437006 NM_173518 ENSG00000178460 MCMDC2 C8orf45 minichromosome maintenance domain containing 2 protein-coding 165.833-38 chr21 20472935 20473244 + 0.833333 NA Intergenic Intergenic -214404 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 114-40 chr14 53446819 53447154 + 0.833333 NA Intergenic MIR|SINE|MIR 293632 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 224.5-3 chr1 228429235 228429539 + 0.833333 NA Intergenic Intergenic -4062 NM_003493 8290 Hs.248171 NM_003493 ENSG00000168148 HIST3H3 H3.4|H3/g|H3FT|H3t histone cluster 3 H3 protein-coding 125.833-65 chr4 79238037 79238286 + 0.833333 NA intron (NR_038342, intron 4 of 5) intron (NR_038342, intron 4 of 5) 87900 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 158.333-45 chr2 166530643 166530866 + 0.833333 NA Intergenic Intergenic -43783 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 279.5-16 chr8 142844074 142844619 + 0.833333 NA intron (NM_002066, intron 3 of 3) L1ME3A|LINE|L1 9545 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 153.833-47 chr4 120076780 120077023 + 0.833333 NA Intergenic AluSz6|SINE|Alu -10053 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 125-14 chr10 88861644 88861853 + 0.833333 NA Intergenic MIR|SINE|MIR -9904 NM_144590 118932 Hs.217484 NM_144590 ENSG00000152766 ANKRD22 - ankyrin repeat domain 22 protein-coding 179.833 chr1 23151875 23152349 + 0.833333 NA intron (NM_033631, intron 1 of 4) intron (NM_033631, intron 1 of 4) 16744 NM_033631 7798 Hs.257900 NM_033631 ENSG00000169641 LUZP1 LUZP leucine zipper protein 1 protein-coding 162.667-41 chr2 88673175 88673554 + 0.833333 NA Intergenic LTR37A|LTR|ERV1 -18309 NM_144563 22934 Hs.469264 NM_144563 ENSG00000153574 RPIA RPI|RPIAD ribose 5-phosphate isomerase A protein-coding 125-50 chr21 31851489 31851667 + 0.833333 NA Intergenic MSTD|LTR|ERVL-MaLR -21442 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 205.167-22 chr2 12623500 12623761 + 0.833333 NA Intergenic Intergenic -93242 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 183.167-54 chr7 33390666 33390982 + 0.833333 NA intron (NM_001348037, intron 18 of 20) L1ME3G|LINE|L1 261260 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 125.333-45 chr14 63170180 63170403 + 0.833333 NA Intergenic L1MA7|LINE|L1 -34152 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 210.5-3 chr1 198244762 198245260 + 0.833333 NA intron (NM_133494, intron 2 of 9) Tigger2a|DNA|TcMar-Tigger 88013 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 129.667-46 chr2 37455143 37455331 + 0.833333 NA Intergenic L2c|LINE|L2 110607 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 210-27 chr4 100522544 100523087 + 0.833333 NA Intergenic Intergenic -4793 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 333.833-4 chr2 203138040 203138786 + 0.833333 NA intron (NM_001114132, intron 29 of 54) intron (NM_001114132, intron 29 of 54) -100028 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 222-33 chr6 82268232 82268677 + 0.833333 NA Intergenic Intergenic -20710 NM_015525 25998 Hs.306425 NM_015525 ENSG00000005700 IBTK BTBD26|BTKI inhibitor of Bruton tyrosine kinase protein-coding 208.333-26 chr22 20941108 20941539 + 0.833333 NA intron (NR_156180, intron 2 of 3) L3|LINE|CR1 -15769 NR_110537 101928891 Hs.648264 NR_110537 ENSG00000237476 LINC01637 - long intergenic non-protein coding RNA 1637 ncRNA 192.667-26 chr2 165088730 165089193 + 0.833333 NA 3' UTR (NM_001081676, exon 28 of 28) 3' UTR (NM_001081676, exon 28 of 28) 115089 NM_006922 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 234.167-8 chr2 47273613 47274186 + 0.833333 NA intron (NR_110207, intron 1 of 2) L2a|LINE|L2 -61416 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 191 chr1 113562549 113562935 + 0.833333 NA intron (NM_001142782, intron 2 of 20) L1PA11|LINE|L1 172227 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 147.167-31 chr2 102848156 102848528 + 0.833333 NA Intergenic L1MC5a|LINE|L1 47380 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 226.833-22 chr8 85056126 85056701 + 0.833333 NA Intergenic Intergenic -50825 NM_001349637 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 125.833-59 chr3 113123479 113123858 + 0.833333 NA Intergenic L2a|LINE|L2 44063 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 184-24 chr2 75168650 75168917 + 0.833333 NA intron (NM_015727, intron 1 of 3) L1ME4a|LINE|L1 30737 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 197.667-23 chr16 2755848 2756116 + 0.833333 NA intron (NM_016333, intron 1 of 14) intron (NM_016333, intron 1 of 14) 3344 NM_016333 23524 Hs.433343 NM_016333 ENSG00000167978 SRRM2 300-KD|CWF21|Cwc21|HSPC075|SRL300|SRm300 serine/arginine repetitive matrix 2 protein-coding 333-2 chr12 57134760 57135470 + 0.833333 NA intron (NM_002332, intron 1 of 88) MIR|SINE|MIR 6632 NM_002332 4035 Hs.162757 NM_002332 ENSG00000123384 LRP1 A2MR|APOER|APR|CD91|IGFBP-3R|IGFBP3R|IGFBP3R1|KPA|LRP|LRP1A|TGFBR5 LDL receptor related protein 1 protein-coding 310.333-11 chr5 117291007 117291454 + 0.833333 NA Intergenic Intergenic -124282 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 330.333-4 chr5 168845424 168846174 + 0.833333 NA intron (NM_003062, intron 5 of 35) intron (NM_003062, intron 5 of 35) -77544 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 336-6 chr21 27672618 27673156 + 0.833333 NA Intergenic Intergenic -49492 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 242.5-13 chr5 58003919 58004344 + 0.833333 NA Intergenic Intergenic -104969 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 185.167-43 chr8 138564059 138564412 + 0.833333 NA Intergenic AluSz|SINE|Alu -66505 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 166.667-21 chr2 29869777 29870016 + 0.833333 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 51690 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 148.833-29 chr19 27604665 27604906 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -188646 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 173.833-29 chr2 186842968 186843221 + 0.833333 NA intron (NM_182521, intron 3 of 8) Charlie5|DNA|hAT-Charlie 6076 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 200.5-23 chr20 20067786 20068063 + 0.833333 NA intron (NM_015585, intron 2 of 26) Tigger16b|DNA|TcMar-Tigger 11278 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 147.833-67 chr8 125410176 125410404 + 0.833333 NA Intergenic MLT1L|LTR|ERVL-MaLR -20068 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 195.833-25 chr6 48226728 48227260 + 0.833333 NA Intergenic L1PA16|LINE|L1 -158305 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 153.5-61 chr6 9902115 9902416 + 0.833333 NA Intergenic Intergenic -502237 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 125-44 chr2 141695206 141695454 + 0.833333 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 436371 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 137.5-48 chr2 186442689 186443006 + 0.833333 NA Intergenic Intergenic -43413 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 174.167-42 chr9 33029376 33029757 + 0.833333 NA intron (NM_001539, intron 3 of 8) intron (NM_001539, intron 3 of 8) 4293 NM_001539 3301 Hs.445203 NM_001539 ENSG00000086061 DNAJA1 DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2 DnaJ heat shock protein family (Hsp40) member A1 protein-coding 266.167-6 chr11 55459344 55459806 + 0.833333 NA Intergenic Intergenic 91691 NM_001005275 81328 Hs.554529 NM_001005275 ENSG00000181958 OR4A15 OR11-118 olfactory receptor family 4 subfamily A member 15 protein-coding 115.167-118 chrX 86828290 86828500 + 0.833333 NA intron (NM_001139514, intron 11 of 11) MIR1_Amn|SINE|MIR 565427 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 222.167-25 chr4 31860388 31861076 + 0.833333 NA Intergenic HAL1|LINE|L1 -136647 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 138.833-17 chr13 56360219 56360465 + 0.833333 NA Intergenic Intergenic -780576 NM_001130404 729233 Hs.723090 NM_001130404 ENSG00000204918 PRR20B PRR20|PRR20A|PRR20C|PRR20D|PRR20E proline rich 20B protein-coding 165.167-45 chr5 156234016 156234370 + 0.833333 NA Intergenic L1MC|LINE|L1 -92564 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 238.167-11 chr19 24338323 24338654 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -175041 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 178.833-5 chr1 179733071 179733433 + 0.833333 NA intron (NM_001329716, intron 1 of 6) MIRb|SINE|MIR 3064 NM_001329716 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 162.667-49 chr22 38164306 38164717 + 0.833333 NA intron (NM_001349869, intron 2 of 16) intron (NM_001349869, intron 2 of 16) 17319 NM_003560 8398 Hs.170479 NM_003560 ENSG00000184381 PLA2G6 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta phospholipase A2 group VI protein-coding 134-111 chr9 81253963 81254198 + 0.833333 NA Intergenic Intergenic 435455 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 179.833-30 chr6 6259176 6259500 + 0.833333 NA intron (NM_000129, intron 4 of 14) intron (NM_000129, intron 4 of 14) 61353 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 148.167-40 chr2 113990076 113990415 + 0.833333 NA intron (NR_148508, intron 1 of 1) intron (NR_148508, intron 1 of 1) -10261 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 138.833-23 chr15 52634625 52635030 + 0.833333 NA intron (NM_019600, intron 2 of 12) AluSx|SINE|Alu 17213 NM_001286495 56204 Hs.152385 NM_019600 ENSG00000047346 FAM214A KIAA1370 family with sequence similarity 214 member A protein-coding 308.666-2 chr20 34402348 34402875 + 0.833333 NA intron (NM_001257138, intron 3 of 23) intron (NM_001257138, intron 3 of 23) 39338 NM_001257138 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH ADMFD|AIF4|AIP4|NAPP1 itchy E3 ubiquitin protein ligase protein-coding 145-89 chr8 37655911 37656177 + 0.833333 NA Intergenic Intergenic -39738 NM_025069 80139 Hs.288042 NM_025069 ENSG00000183779 ZNF703 NLZ1|ZEPPO1|ZNF503L|ZPO1 zinc finger protein 703 protein-coding 273.667-2 chr1 244407620 244408025 + 0.833333 NA TTS (NM_001126) TTS (NM_001126) 44087 NM_001126 159 Hs.498313 NM_001126 ENSG00000035687 ADSS ADEH|ADSS 2|ADSS2 adenylosuccinate synthase protein-coding 252-10 chr3 26848966 26849443 + 0.833333 NA Intergenic L1MEc|LINE|L1 154647 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 195.5-29 chr3 63692993 63693400 + 0.833333 NA Intergenic L1MB3|LINE|L1 40521 NM_001080537 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 125.167-18 chr12 9049428 9049751 + 0.833333 NA Intergenic Intergenic 15481 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 238-30 chr8 117485433 117485961 + 0.833333 NA Intergenic L1PA16|LINE|L1 -35016 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 205.5-27 chr3 56754358 56754732 + 0.833333 NA intron (NM_001128615, intron 6 of 12) intron (NM_001128615, intron 6 of 12) 21172 NM_001128616 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 196.667-40 chr3 197782943 197783373 + 0.833333 NA non-coding (NR_027840, exon 9 of 9) non-coding (NR_027840, exon 9 of 9) -8068 NM_001363887 84859 Hs.518414 NM_032773 ENSG00000186001 LRCH3 - leucine rich repeats and calponin homology domain containing 3 protein-coding 114-20 chr10 109586321 109586786 + 0.833333 NA Intergenic Intergenic 336693 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 132.167-12 chr11 27490229 27490484 + 0.833333 NA Intergenic Intergenic 16413 NM_018362 55327 Hs.91393 NM_018362 ENSG00000148943 LIN7C LIN-7-C|LIN-7C|MALS-3|MALS3|VELI3 lin-7 homolog C, crumbs cell polarity complex component protein-coding 250.5-5 chr16 24082439 24082897 + 0.833333 NA intron (NM_002738, intron 5 of 16) L1ME1|LINE|L1 -120448 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 124.5-21 chr14 64571401 64571668 + 0.833333 NA intron (NM_172365, intron 7 of 11) L1ME4c|LINE|L1 21573 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 312.167-11 chr7 90314861 90315590 + 0.833333 NA Intergenic L1PREC2|LINE|L1 -19998 NR_110085 101927446 Hs.734999 NR_110085 ENSG00000105793 LOC101927446 - uncharacterized LOC101927446 ncRNA 114.167-49 chr2 135448744 135448930 + 0.833333 NA intron (NM_001286569, intron 2 of 21) intron (NM_001286569, intron 2 of 21) 81748 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 162.667-81 chr8 73559038 73559383 + 0.833333 NA intron (NM_001164384, intron 10 of 10) L1MD3|LINE|L1 139136 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 128.667-104 chr7 10219916 10220160 + 0.833333 NA Intergenic Intergenic -482638 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 134.833-4 chr1 178267421 178267607 + 0.833333 NA intron (NM_170692, intron 1 of 17) HAL1|LINE|L1 -73937 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 186.667-73 chr6 80086286 80086686 + 0.833333 NA Intergenic Intergenic -20124 NM_001318975 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 243.167-9 chr4 67780950 67781366 + 0.833333 NA Intergenic MER4B|LTR|ERV1 -25072 NM_001012763 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 379.167-3 chr5 128002447 128003238 + 0.833333 NA intron (NR_152803, intron 1 of 1) intron (NR_152803, intron 1 of 1) 80333 NR_152800 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 228.333-19 chr3 173810800 173811305 + 0.833333 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) 109744 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 233.167 chr1 111287049 111287382 + 0.833333 NA Intergenic L2a|LINE|L2 -3636 NM_001258001 27159 Hs.128814 NM_021797 ENSG00000134216 CHIA AMCASE|CHIT2|TSA1902 chitinase acidic protein-coding 156.5-34 chr16 31854206 31854449 + 0.833333 NA Intergenic L1M4b|LINE|L1 -19431 NR_049749 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 167.5-49 chr5 37172610 37172840 + 0.833333 NA intron (NM_023073, intron 32 of 51) AluSx|SINE|Alu -76321 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 169-47 chr5 146809208 146809452 + 0.833333 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 69455 NR_073526 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 205.167-36 chr6 127281375 127281697 + 0.833333 NA intron (NM_001242852, intron 3 of 4) L2c|LINE|L2 14698 NM_001242850 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 155.5-65 chr9 130642883 130643251 + 0.833333 NA Intergenic Intergenic 16770 NR_106915 102465515 NR_106915 ENSG00000277713 MIR6856 hsa-mir-6856 microRNA 6856 ncRNA 146.5-18 chr11 94523296 94523545 + 0.833333 NA intron (NM_001190462, intron 2 of 3) intron (NM_001190462, intron 2 of 3) 10959 NM_001190462 643037 NM_001190462 ENSG00000257057 C11orf97 LINC01171 chromosome 11 open reading frame 97 protein-coding 124.167-88 chr8 67799972 67800261 + 0.833333 NA Intergenic Intergenic -53756 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 145-35 chr17 65717325 65717636 + 0.833333 NA intron (NR_126542, intron 2 of 5) intron (NR_126542, intron 2 of 5) 108971 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 138.333-27 chr13 66973048 66973255 + 0.833333 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) -4238 NR_046636 100874086 Hs.577908 NR_046636 ENSG00000225263 PCDH9-AS3 - PCDH9 antisense RNA 3 ncRNA 142.5-70 chr8 99782835 99783092 + 0.833333 NA intron (NM_017890, intron 42 of 61) intron (NM_017890, intron 42 of 61) 110744 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 185.333-3 chr1 189118355 189118972 + 0.833333 NA Intergenic Intergenic 1357347 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 175.5-7 chr10 24840909 24841349 + 0.833333 NA Intergenic Tigger3a|DNA|TcMar-Tigger 111477 NM_020200 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 225.5-26 chr2 28906640 28907101 + 0.833333 NA intron (NM_015131, intron 3 of 17) intron (NM_015131, intron 3 of 17) -6792 NR_003074 692209 NR_003074 ENSG00000264994 SNORD92 HBII-316 small nucleolar RNA, C/D box 92 snoRNA 149.167-27 chr2 12397059 12397287 + 0.833333 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 198043 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 258.667-2 chr1 96587209 96587572 + 0.833333 NA Intergenic Intergenic -134215 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 170.833-39 chr5 170883020 170883259 + 0.833333 NA intron (NM_022897, intron 3 of 27) intron (NM_022897, intron 3 of 27) 21121 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 308.667 chr1 117941680 117942415 + 0.833333 NA intron (NM_006784, intron 9 of 26) intron (NM_006784, intron 9 of 26) 12308 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 130.333-61 chr3 78405318 78405579 + 0.833333 NA Intergenic LTR40c|LTR|ERVL -356485 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 196.667-43 chr5 8756571 8757041 + 0.833333 NA Intergenic Intergenic -82926 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 199.667-41 chr3 111975042 111975382 + 0.833333 NA 3' UTR (NM_001134438, exon 18 of 18) 3' UTR (NM_001134438, exon 18 of 18) -3814 NR_073571 55347 Hs.477115 NM_018394 ENSG00000144827 ABHD10 - abhydrolase domain containing 10 protein-coding 204-5 chr12 45332590 45332931 + 0.833333 NA intron (NM_001025356, intron 3 of 19) MLT1J1|LTR|ERVL-MaLR 40070 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 253.667-9 chr2 124099608 124099981 + 0.833333 NA intron (NM_130773, intron 1 of 23) MSTA|LTR|ERVL-MaLR 74507 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 147-37 chr2 63712762 63713109 + 0.833333 NA Intergenic Intergenic 123784 NM_001199111 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 241.833-18 chr8 22112428 22112774 + 0.833333 NA Intergenic Intergenic -3182 NM_024815 79873 Hs.527101 NM_024815 ENSG00000275074 NUDT18 MTH3 nudix hydrolase 18 protein-coding 153.833-10 chr10 43763919 43764371 + 0.833333 NA Intergenic L1MC5a|LINE|L1 14680 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 139.333-44 chr16 73575744 73576077 + 0.833333 NA Intergenic Intergenic 189105 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 229.667-26 chr5 6426539 6426920 + 0.833333 NA Intergenic (GATG)n|Simple_repeat|Simple_repeat -22130 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 265.333-7 chr11 108114628 108115045 + 0.833333 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -6731 NM_000019 38 Hs.232375 NM_000019 ENSG00000075239 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 176.5-63 chr8 54107945 54108447 + 0.833333 NA Intergenic AluJo|SINE|Alu -6179 NM_001279356 10434 Hs.744046 NM_006330 ENSG00000120992 LYPLA1 APT-1|APT1|LPL-I|LPL1|hAPT1 lysophospholipase 1 protein-coding 134-79 chr4 38460435 38460626 + 0.833333 NA intron (NR_110951, intron 2 of 7) MER45C|DNA|hAT-Tip100 -49237 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 303.5-2 chr11 77358611 77359474 + 0.833333 NA intron (NM_001128620, intron 5 of 15) intron (NM_001128620, intron 5 of 15) -57376 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 124.333-96 chr8 5108289 5108523 + 0.833333 NA Intergenic Intergenic -113492 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 175.5-60 chr8 87533746 87534211 + 0.833333 NA Intergenic Intergenic 340037 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 253.667-19 chr7 30788982 30789381 + 0.833333 NA intron (NR_037598, intron 6 of 19) intron (NR_037598, intron 6 of 19) 17764 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 162.333-57 chr5 36158983 36159245 + 0.833333 NA intron (NM_001243120, intron 2 of 7) intron (NM_001243120, intron 2 of 7) 7003 NM_032637 6502 Hs.23348 NM_005983 ENSG00000145604 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase associated protein 2 protein-coding 114.833-53 chr5 40550411 40550687 + 0.833333 NA Intergenic L1PA11|LINE|L1 -129366 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 233.5-15 chr20 57716993 57717322 + 0.833333 NA Intergenic MER44A|DNA|TcMar-Tigger -5621 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 172-52 chr4 159565413 159565786 + 0.833333 NA Intergenic ERV24_Prim-int|LTR|ERV1 212185 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 163.833-57 chr8 99394587 99394849 + 0.833333 NA intron (NM_017890, intron 21 of 61) intron (NM_017890, intron 21 of 61) 142012 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 128-71 chr5 10210150 10210327 + 0.833333 NA Intergenic L1M4|LINE|L1 39650 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 114.5-9 chr10 11390585 11390819 + 0.833333 NA Intergenic Intergenic -46028 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 352-2 chr4 43350834 43351508 + 0.833333 NA Intergenic L1MD3|LINE|L1 141372 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 179.167-28 chr21 29045039 29045571 + 0.833333 NA intron (NM_001032410, intron 14 of 18) intron (NM_001032410, intron 14 of 18) 20637 NM_006447 10600 Hs.99819 NM_006447 ENSG00000156256 USP16 UBP-M|UBPM ubiquitin specific peptidase 16 protein-coding 161.667-53 chr3 74067242 74067526 + 0.833333 NA Intergenic Intergenic 258140 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 157.833-67 chr8 38448353 38448751 + 0.833333 NA intron (NM_001174064, intron 2 of 18) intron (NM_001174064, intron 2 of 18) 19172 NM_001174066 2260 Hs.264887 NM_015850 ENSG00000077782 FGFR1 BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 187.5-53 chr8 124133779 124134073 + 0.833333 NA intron (NR_103547, intron 1 of 4) L1PA15|LINE|L1 37596 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 162.833-37 chr5 10651595 10651981 + 0.833333 NA 3' UTR (NM_001164440, exon 4 of 4) 3' UTR (NM_001164440, exon 4 of 4) 87718 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 210-17 chr2 80728567 80728993 + 0.833333 NA Intergenic L1MA1|LINE|L1 415401 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 210.333-32 chr5 54047696 54048185 + 0.833333 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -96341 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 129.5-66 chr4 142957736 142957977 + 0.833333 NA Intergenic Intergenic -111321 NM_001331040 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 172.667-66 chr5 93554946 93555277 + 0.833333 NA intron (NR_109819, intron 2 of 5) intron (NR_109819, intron 2 of 5) 16232 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 211.333-6 chr1 114301834 114302187 + 0.833333 NA Intergenic MLT1G1|LTR|ERVL-MaLR -148141 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 144.833-15 chr12 6299186 6299445 + 0.833333 NA Intergenic Charlie2b|DNA|hAT-Charlie -11121 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 169.833-3 chr1 177652242 177652642 + 0.833333 NA Intergenic Intergenic -48082 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 154-85 chr8 138954606 138954878 + 0.833333 NA Intergenic MER4B|LTR|ERV1 -40701 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 182-26 chr2 139268888 139269354 + 0.833333 NA Intergenic Intergenic 371797 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 144.167-18 chr12 49641161 49641351 + 0.833333 NA 3' UTR (NM_198900, exon 25 of 25) 3' UTR (NM_198900, exon 25 of 25) 10712 NM_001363607 25766 Hs.706827 NM_012272 ENSG00000110844 PRPF40B HYPC pre-mRNA processing factor 40 homolog B protein-coding 182 chr1 162137231 162137456 + 0.833333 NA intron (NM_014697, intron 1 of 9) intron (NM_014697, intron 1 of 9) -19764 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 169.333-2 chr1 71487903 71488248 + 0.833333 NA intron (NM_173808, intron 6 of 6) LTR67B|LTR|ERVL 348937 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 196-43 chr3 64757648 64758012 + 0.833333 NA intron (NR_038264, intron 1 of 5) intron (NR_038264, intron 1 of 5) -69830 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 198.333-13 chr15 85389750 85390086 + 0.833333 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 9315 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 234-28 chr4 40874069 40874390 + 0.833333 NA intron (NM_173075, intron 11 of 16) L4_C_Mam|LINE|RTE-X -17037 NM_001166053 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 178.167-51 chr8 112483150 112483402 + 0.833333 NA intron (NM_001363185, intron 29 of 66) AluSx1|SINE|Alu -160217 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 195.5-43 chr8 136960040 136960558 + 0.833333 NA Intergenic L1MC4|LINE|L1 429501 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 256.333-16 chr21 29637725 29638085 + 0.833333 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 41865 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 145.833-55 chr4 17226097 17226445 + 0.833333 NA Intergenic Intergenic -40214 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 163.333-12 chr10 74121947 74122254 + 0.833333 NA TTS (NM_003373) TTS (NM_003373) 28728 NM_001320265 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 156.167-16 chr12 62403072 62403438 + 0.833333 NA intron (NR_147080, intron 19 of 19) L2c|LINE|L2 -63571 NM_001278469 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 161-29 chr2 74021500 74021779 + 0.833333 NA intron (NM_001287491, intron 3 of 11) intron (NM_001287491, intron 3 of 11) 18947 NM_001366022 200424 Hs.208546 NM_001287491 ENSG00000187605 TET3 hCG_40738 tet methylcytosine dioxygenase 3 protein-coding 220.167-15 chr18 3962504 3962842 + 0.833333 NA intron (NR_102696, intron 1 of 4) HAL1ME|LINE|L1 320 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 206.667-48 chr8 105751054 105751403 + 0.833333 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 309275 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 234.833-3 chr10 43525310 43525861 + 0.833333 NA Intergenic Intergenic 42874 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 147.167-45 chr4 44414181 44414427 + 0.833333 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 34505 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 177.833-35 chr5 90867009 90867387 + 0.833333 NA intron (NR_003149, intron 83 of 89) intron (NR_003149, intron 83 of 89) 308401 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 186.333-16 chr12 75409261 75409508 + 0.833333 NA intron (NR_072995, intron 2 of 6) intron (NR_072995, intron 2 of 6) 18295 NM_001270396 144321 Hs.406728 NM_152436 ENSG00000180481 GLIPR1L2 - GLIPR1 like 2 protein-coding 241 chr1 13650485 13650826 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -49533 NM_001135610 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 201-20 chr18 23025096 23025503 + 0.833333 NA intron (NM_002894, intron 18 of 18) intron (NM_002894, intron 18 of 18) 91423 NM_203292 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 239-12 chr3 181189423 181189910 + 0.833333 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 14522 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 156.5-37 chr17 58965517 58965872 + 0.833333 NA exon (NM_014906, exon 3 of 7) exon (NM_014906, exon 3 of 7) 141186 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 216.333-7 chr10 59054214 59054556 + 0.833333 NA Intergenic L1ME3A|LINE|L1 54867 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 142.833-75 chr9 3055182 3055474 + 0.833333 NA Intergenic Intergenic -126261 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 130.667-82 chr6 71353655 71354020 + 0.833333 NA Intergenic L1MC4a|LINE|L1 23194 NR_029598 407032 NR_029598 ENSG00000199094 MIR30C2 MIRN30C2|mir-30c-2 microRNA 30c-2 ncRNA 224.167-16 chr20 32299685 32300103 + 0.833333 NA intron (NM_004798, intron 1 of 8) AluJo|SINE|Alu 22243 NM_004798 9371 Hs.369670 NM_004798 ENSG00000101350 KIF3B FLA8|HH0048|KLP-11 kinesin family member 3B protein-coding 189.5-39 chr3 157985493 157985959 + 0.833333 NA Intergenic Intergenic 120437 NM_006884 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 192.834 chr11 79858329 79858987 + 0.833333 NA Intergenic Intergenic -417628 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 170.667-54 chr5 35162283 35162651 + 0.833333 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) -44345 NM_001204317 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 142.667-82 chr5 66150456 66150827 + 0.833333 NA intron (NM_139168, intron 1 of 12) L2c|LINE|L2 5806 NM_139168 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 153.5-39 chr20 40523982 40524292 + 0.833333 NA Intergenic MIRb|SINE|MIR 165099 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 284.833-6 chr4 93025449 93025942 + 0.833333 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 721296 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 213.167-37 chr9 121063630 121064009 + 0.833333 NA intron (NM_001317163, intron 1 of 40) intron (NM_001317163, intron 1 of 40) 11046 NM_001317163 727 Hs.494997 NM_001735 ENSG00000106804 C5 C5D|C5a|C5b|CPAMD4|ECLZB complement C5 protein-coding 262.667-29 chr6 115091996 115092507 + 0.833333 NA Intergenic L1PA8|LINE|L1 551584 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 131.5-33 chr2 10294181 10294436 + 0.833333 NA Intergenic AluSq2|SINE|Alu -8596 NM_002149 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 172.167-19 chr15 85873580 85873962 + 0.833333 NA Intergenic Intergenic 48136 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 275.5 chr1 183642682 183643103 + 0.833333 NA intron (NM_001297670, intron 1 of 17) L1MB3|LINE|L1 6783 NM_001297669 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 170.167-15 chr13 28548321 28548641 + 0.833333 NA Intergenic L2|LINE|L2 -53353 NM_001160031 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 148.667-62 chr5 42992117 42992387 + 0.833333 NA non-coding (NR_104643, exon 1 of 2) non-coding (NR_104643, exon 1 of 2) 1081 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 164.833-12 chr12 1920313 1920652 + 0.833333 NA Intergenic L1MB3|LINE|L1 -1830 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 115.833-30 chr19 46377923 46378135 + 0.833333 NA intron (NM_001204284, intron 4 of 11) L1ME2|LINE|L1 30942 NM_006247 5536 Hs.654604 NM_006247 ENSG00000011485 PPP5C PP5|PPP5|PPT protein phosphatase 5 catalytic subunit protein-coding 251.833-11 chr8 79046883 79047375 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL 209600 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 248.167-5 chr10 66993604 66994151 + 0.833333 NA intron (NR_111911, intron 1 of 6) intron (NR_111911, intron 1 of 6) 18276 NR_111911 101928961 Hs.687014 NR_111911 LOC101928961 - uncharacterized LOC101928961 ncRNA 121.833-10 chr11 44892754 44892999 + 0.833333 NA intron (NM_130783, intron 3 of 9) MIRb|SINE|MIR 57284 NM_001318384 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 239.333-27 chrX 101974518 101974879 + 0.833333 NA Intergenic L1PA15|LINE|L1 -42671 NM_001282401 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 171-53 chr6 120965929 120966284 + 0.833333 NA Intergenic LTR8B|LTR|ERV1 368374 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 147.333-38 chr2 49608567 49608876 + 0.833333 NA Intergenic Intergenic 365482 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 137-99 chr9 77586184 77586370 + 0.833333 NA intron (NM_004297, intron 1 of 6) L1MB5|LINE|L1 62045 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 166.333-24 chr15 53586709 53586966 + 0.833333 NA intron (NM_182758, intron 18 of 19) intron (NM_182758, intron 18 of 19) -45734 NM_001277176 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 318-8 chr6 28208765 28209363 + 0.833333 NA Intergenic Intergenic 9865 NR_002936 222699 Hs.161441 NR_002936 TOB2P1 TOB2P|TOB4p|p373c6.3 transducer of ERBB2, 2 pseudogene 1 pseudo 142.333-68 chr3 79068132 79068384 + 0.833333 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) -48799 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 149.5-2 chr1 92087101 92087569 + 0.833333 NA intron (NM_183242, intron 1 of 8) intron (NM_183242, intron 1 of 8) 6990 NM_183242 284697 Hs.676102 NM_183242 ENSG00000189195 BTBD8 - BTB domain containing 8 protein-coding 135-94 chr9 128505253 128505513 + 0.833333 NA intron (NM_001499, intron 1 of 13) intron (NM_001499, intron 1 of 13) 691 NM_001003722 2733 Hs.522418 NM_001499 ENSG00000119392 GLE1 CAAHC|CAAHD|GLE1L|LCCS|LCCS1|hGLE1 GLE1 RNA export mediator protein-coding 216.833-4 chr11 106155123 106155413 + 0.833333 NA Intergenic AluYj4|SINE|Alu -23152 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 128.333-53 chr18 60742388 60742552 + 0.833333 NA Intergenic Intergenic -369695 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 125.167-20 chr14 28341548 28341849 + 0.833333 NA Intergenic Intergenic 423621 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 267.167-4 chr11 108886340 108886990 + 0.833333 NA intron (NM_004398, intron 16 of 17) intron (NM_004398, intron 16 of 17) 221596 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 232.5-26 chr4 82647335 82647794 + 0.833333 NA intron (NM_001037582, intron 3 of 4) intron (NM_001037582, intron 3 of 4) -26127 NR_024088 439934 Hs.457189 NM_001033661 ENSG00000231782 LINC00575 C4orf11 long intergenic non-protein coding RNA 575 ncRNA 178.833-10 chr14 57002131 57002379 + 0.833333 NA Intergenic L2b|LINE|L2 189097 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 199.833-8 chr14 46194979 46195417 + 0.833333 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 131039 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 230.333-25 chr6 27736387 27736786 + 0.833333 NA Intergenic Intergenic -25158 NR_038929 100131289 Hs.200573 NR_038929 LOC100131289 - uncharacterized LOC100131289 ncRNA 197.167-30 chr20 38814576 38814929 + 0.833333 NA intron (NM_015568, intron 1 of 10) intron (NM_015568, intron 1 of 10) 9055 NM_015568 26051 Hs.45719 NM_015568 ENSG00000101445 PPP1R16B ANKRD4|TIMAP protein phosphatase 1 regulatory subunit 16B protein-coding 172.333-16 chr11 85026243 85026670 + 0.833333 NA intron (NM_001351274, intron 5 of 26) L1ME3G|LINE|L1 -103035 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 160.833-12 chr11 29483940 29484178 + 0.833333 NA Intergenic Intergenic -110354 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 116.833-35 chr3 15118165 15118383 + 0.833333 NA Intergenic AluJo|SINE|Alu -19117 NR_126155 64145 Hs.475565 NM_022340 ENSG00000131381 RBSN Rabenosyn-5|ZFYVE20 rabenosyn, RAB effector protein-coding 180.333-14 chr11 58624950 58625367 + 0.833333 NA non-coding (NR_024091, exon 13 of 13) non-coding (NR_024091, exon 13 of 13) 2493 NM_000614 1270 Hs.524920 NM_000614 ENSG00000242689 CNTF HCNTF ciliary neurotrophic factor protein-coding 151.333-67 chr4 44308316 44308755 + 0.833333 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 140274 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 200.5-29 chr3 38513104 38513634 + 0.833333 NA intron (NM_005107, intron 5 of 5) HAL1ME|LINE|L1 17029 NM_005107 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 218.833-29 chr9 10713920 10714276 + 0.833333 NA Intergenic Intergenic 100892 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 234.833-6 chr14 27033314 27033726 + 0.833333 NA Intergenic Intergenic 124878 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 208-33 chr5 93866311 93866595 + 0.833333 NA intron (NM_032042, intron 7 of 10) (ACACAC)n|Simple_repeat|Simple_repeat -124853 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 125.667-23 chr12 10158167 10158555 + 0.833333 NA TTS (NM_002543) TTS (NM_002543) -12238 NM_001079815 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 151.167-56 chr8 118196461 118196877 + 0.833333 NA non-coding (NR_109794, exon 5 of 5) non-coding (NR_109794, exon 5 of 5) -84850 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 142.5-25 chr15 34674815 34675065 + 0.833333 NA Intergenic Intergenic -19176 NR_146869 105370762 Hs.569462 NR_146869 ENSG00000261304 LINC02252 - long intergenic non-protein coding RNA 2252 ncRNA 177.5-62 chr5 62150621 62150843 + 0.833333 NA Intergenic AluJb|SINE|Alu -155430 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 252.333-23 chr7 35282904 35283541 + 0.833333 NA Intergenic Intergenic -29122 NM_001166220 57057 Hs.404167 NM_020417 ENSG00000164532 TBX20 ASD4 T-box transcription factor 20 protein-coding 241.333-13 chr16 86643421 86643872 + 0.833333 NA Intergenic Intergenic 65137 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 283.667-5 chr10 113911979 113912446 + 0.833333 NA 3' UTR (NM_198514, exon 11 of 11) 3' UTR (NM_198514, exon 11 of 11) 57551 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 198-49 chr5 36269636 36269951 + 0.833333 NA intron (NM_001323279, intron 3 of 12) intron (NM_001323279, intron 3 of 12) -27514 NM_153013 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 135.667-60 chr2 188135567 188135772 + 0.833333 NA intron (NR_126396, intron 2 of 2) intron (NR_126396, intron 2 of 2) 152022 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 186.5-51 chr5 18033765 18034054 + 0.833333 NA Intergenic L1MA9|LINE|L1 226635 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 222.167-19 chr18 9823193 9823671 + 0.833333 NA intron (NM_006868, intron 5 of 6) L1MD2|LINE|L1 -62541 NM_032243 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 121.5-85 chr5 120824260 120824495 + 0.833333 NA Intergenic Intergenic 292913 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 155.667-27 chr15 26954794 26955089 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -16240 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 124.167-23 chr14 30519394 30519635 + 0.833333 NA intron (NR_151720, intron 3 of 3) intron (NR_151720, intron 3 of 3) -39609 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 155.833-11 chr11 115385163 115385381 + 0.833333 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -11484 NR_135103 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 227.333-34 chr5 41138898 41139359 + 0.833333 NA Intergenic MER51B|LTR|ERV1 -67786 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 331-8 chr5 86033577 86034275 + 0.833333 NA Intergenic Intergenic -248518 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 202.5-9 chr16 85757797 85758060 + 0.833333 NA Intergenic AluJb|SINE|Alu -6832 NR_161454 404550 Hs.461655 NM_206967 ENSG00000154102 C16orf74 - chromosome 16 open reading frame 74 protein-coding 167-34 chr2 236370118 236370593 + 0.833333 NA intron (NR_073043, intron 13 of 19) MIR|SINE|MIR -106010 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 205.833-5 chr10 128520266 128520695 + 0.833333 NA Intergenic Intergenic 234530 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 214.5-30 chr5 100410344 100410796 + 0.833333 NA Intergenic AluSg|SINE|Alu -22316 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 141.667-121 chrX 152650753 152650991 + 0.833333 NA intron (NM_018558, intron 7 of 8) intron (NM_018558, intron 7 of 8) 12977 NM_018558 55879 Hs.283081 NM_018558 ENSG00000268089 GABRQ THETA gamma-aminobutyric acid type A receptor theta subunit protein-coding 179.5-38 chr8 34386535 34386941 + 0.833333 NA Intergenic L1MCa|LINE|L1 -397183 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 136.5-54 chr2 180986269 180986618 + 0.833333 NA intron (NM_001278555, intron 3 of 5) intron (NM_001278555, intron 3 of 5) 5319 NM_001278554 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 285.167-8 chr5 163923776 163924138 + 0.833333 NA Intergenic Intergenic 418338 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 116.167-82 chr8 138517252 138517458 + 0.833333 NA Intergenic MLT1A1|LTR|ERVL-MaLR -19625 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 131.167-29 chr15 70318591 70319001 + 0.833333 NA Intergenic Intergenic 187132 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 317.5-2 chr1 216556238 216556780 + 0.833333 NA intron (NM_001243518, intron 6 of 7) intron (NM_001243518, intron 6 of 7) -133061 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 252.167-9 chr2 207333043 207333366 + 0.833333 NA Intergenic Intergenic -63780 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 256.667-25 chr7 30421378 30422046 + 0.833333 NA Intergenic LTR73|LTR|ERV1 30827 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 171-3 chr1 84178906 84179160 + 0.833333 NA intron (NM_001300915, intron 4 of 11) intron (NM_001300915, intron 4 of 11) -2599 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 154.5-22 chr14 52653354 52653622 + 0.833333 NA intron (NM_014584, intron 11 of 15) (ATTTAAT)n|Simple_repeat|Simple_repeat 42070 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 191.667-40 chr4 32825770 32826125 + 0.833333 NA Intergenic MER4-int|LTR|ERV1 474909 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 159-69 chr9 135980580 135981035 + 0.833333 NA Intergenic (TCCCTA)n|Simple_repeat|Simple_repeat -19434 NM_016172 10422 Hs.9194 NM_016172 ENSG00000130560 UBAC1 GBDR1|KPC2|UBADC1 UBA domain containing 1 protein-coding 223-18 chr3 114976479 114976874 + 0.833333 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) -76051 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 305.167-6 chr4 46341276 46341708 + 0.833333 NA intron (NM_001114175, intron 2 of 8) L1M4|LINE|L1 47887 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 154.833-56 chr8 51933435 51933731 + 0.833333 NA Intergenic Intergenic -34397 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 148.167-74 chr6 72068298 72068657 + 0.833333 NA intron (NM_001350411, intron 2 of 3) intron (NM_001350411, intron 2 of 3) -144416 NM_001350439 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 142.167-76 chr8 13787874 13788157 + 0.833333 NA Intergenic Intergenic 158325 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 167.5-28 chr2 9065235 9065530 + 0.833333 NA Intergenic MER67C|LTR|ERV1 -61698 NR_135600 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 223.833-18 chr2 208513879 208514260 + 0.833333 NA Intergenic L1ME2|LINE|L1 -28573 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 279.167-4 chr12 4248363 4248752 + 0.833333 NA TTS (NR_149145) TTS (NR_149145) -25205 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 153.667-21 chr12 94012140 94012588 + 0.833333 NA Intergenic Intergenic -68758 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 162-68 chr7 79731584 79732073 + 0.833333 NA Intergenic L1M1|LINE|L1 277868 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 204.833-30 chr6 148857297 148857693 + 0.833333 NA intron (NM_005715, intron 1 of 7) intron (NM_005715, intron 1 of 7) 107189 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 169.333-23 chr14 21864040 21864390 + 0.833333 NA Intergenic L1PA16|LINE|L1 -193198 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 155.167-29 chr22 35231806 35232056 + 0.833333 NA promoter-TSS (NR_126356) promoter-TSS (NR_126356) -875 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 134.667-38 chr17 28062148 28062353 + 0.833333 NA intron (NM_016231, intron 1 of 10) Plat_L3|LINE|CR1 19573 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 155.167-19 chr17 12046032 12046360 + 0.833333 NA intron (NM_001281435, intron 2 of 11) intron (NM_001281435, intron 2 of 11) 25319 NM_001281435 6416 Hs.514681 NM_003010 ENSG00000065559 MAP2K4 JNKK|JNKK1|MAPKK4|MEK4|MKK4|PRKMK4|SAPKK-1|SAPKK1|SEK1|SERK1|SKK1 mitogen-activated protein kinase kinase 4 protein-coding 176.334-8 chr5 126541808 126542349 + 0.833333 NA 3' UTR (NM_001182, exon 18 of 18) 3' UTR (NM_001182, exon 18 of 18) 53141 NM_001202404 501 Hs.483239 NM_001182 ENSG00000164904 ALDH7A1 ATQ1|EPD|PDE aldehyde dehydrogenase 7 family member A1 protein-coding 237.167-16 chr4 53898840 53899404 + 0.833333 NA Intergenic Intergenic 88160 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 181.833-34 chr3 107460472 107460778 + 0.833333 NA intron (NR_110039, intron 1 of 2) intron (NR_110039, intron 1 of 2) 29695 NR_110039 101929607 Hs.252565 NR_110039 ENSG00000273125 LINC01990 - long intergenic non-protein coding RNA 1990 ncRNA 141.5-81 chr8 60036227 60036751 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger 244911 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 170.5-27 chr2 4046813 4047090 + 0.833333 NA Intergenic Intergenic 72790 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 228.167-4 chr12 26683456 26683855 + 0.833333 NA intron (NM_002223, intron 11 of 56) Tigger17a|DNA|TcMar-Tigger 149539 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 170.667-51 chr5 12005340 12005586 + 0.833333 NA Intergenic L1MC1|LINE|L1 -101017 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 212.167-21 chr5 80676749 80677310 + 0.833333 NA intron (NM_002439, intron 7 of 23) L2|LINE|L2 -22046 NM_001290354 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 253.833-13 chr5 121447623 121448236 + 0.833333 NA Intergenic L1MA2|LINE|L1 125379 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 218.333-22 chr2 237807126 237807703 + 0.833333 NA intron (NM_001080504, intron 1 of 15) AluSx1|SINE|Alu 8669 NM_001080504 375316 Hs.607265 NM_198852 ENSG00000177483 RBM44 - RNA binding motif protein 44 protein-coding 132.167-33 chr2 10688834 10689128 + 0.833333 NA intron (NM_024894, intron 1 of 20) L3|LINE|CR1 994 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 134.167-19 chr12 12351164 12351400 + 0.833333 NA Intergenic Intergenic -1040 NM_018050 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 343.667 chr1 152637354 152638111 + 0.833333 NA Intergenic L1MEg|LINE|L1 -14629 NM_178431 353142 Hs.553714 NM_178431 ENSG00000185962 LCE3A LEP13 late cornified envelope 3A protein-coding 158.667-69 chr5 24168522 24168867 + 0.833333 NA intron (NR_131245, intron 4 of 4) MER121|DNA|hAT? 217346 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 152.833-66 chr7 47872421 47872811 + 0.833333 NA intron (NM_138295, intron 24 of 56) L1MB8|LINE|L1 75875 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 172.833-21 chr15 62327061 62327373 + 0.833333 NA Intergenic Intergenic -15812 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 297.833-8 chr4 11455658 11456251 + 0.833333 NA Intergenic Intergenic -27060 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 207.667-17 chr17 78277107 78277531 + 0.833333 NA intron (NR_073178, intron 1 of 6) L1PA13|LINE|L1 1173 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LINC01993 - long intergenic non-protein coding RNA 1993 ncRNA 252.333-10 chr12 81108939 81109289 + 0.833333 NA intron (NM_024560, intron 1 of 15) intron (NM_024560, intron 1 of 15) 31035 NM_024560 79611 Hs.259559 NM_024560 ENSG00000111058 ACSS3 - acyl-CoA synthetase short chain family member 3 protein-coding 192.167-41 chr7 51263184 51263428 + 0.833333 NA intron (NM_015198, intron 1 of 12) intron (NM_015198, intron 1 of 12) 53503 NM_001287438 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 152.333-16 chr14 59691531 59691892 + 0.833333 NA intron (NM_021136, intron 3 of 8) L1PA15-16|LINE|L1 -44691 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 116.833 chr1 114766314 114766606 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -8410 NM_001242891 7812 Hs.69855 NM_007158 ENSG00000009307 CSDE1 D1S155E|UNR cold shock domain containing E1 protein-coding 193-25 chr2 80958086 80958515 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL 508646 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 379.667-4 chr3 111595578 111596187 + 0.833333 NA promoter-TSS (NM_024508) promoter-TSS (NM_024508) -536 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 194.667-18 chr12 22498624 22499069 + 0.833333 NA intron (NM_001286176, intron 10 of 26) intron (NM_001286176, intron 10 of 26) 45351 NM_001286174 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 150.167-42 chr3 112098314 112098678 + 0.833333 NA intron (NM_024616, intron 2 of 5) intron (NM_024616, intron 2 of 5) 12161 NM_024616 79669 Hs.434247 NM_024616 ENSG00000114529 C3orf52 TTMP chromosome 3 open reading frame 52 protein-coding 138.167-47 chr20 6323414 6323649 + 0.833333 NA Intergenic Tigger17c|DNA|TcMar-Tigger -103201 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 179.667-25 chr2 54448052 54448425 + 0.833333 NA Intergenic Intergenic -8089 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 268.167 chr10 52626078 52626433 + 0.833333 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 129149 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 127.5-14 chr11 32933627 32933806 + 0.833333 NA exon (NM_001076786, exon 4 of 13) exon (NM_001076786, exon 4 of 13) 40905 NM_001076786 79832 Hs.369368 NM_024774 ENSG00000060749 QSER1 - glutamine and serine rich 1 protein-coding 123.5-11 chr10 43975451 43975649 + 0.833333 NA intron (NR_136147, intron 4 of 4) MLT1C|LTR|ERVL-MaLR 63148 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 197.167-2 chr1 71564441 71564718 + 0.833333 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 272433 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 138.667-48 chr2 202580317 202580612 + 0.833333 NA Intergenic L1PA15-16|LINE|L1 -54505 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 176.833-2 chr1 59399351 59399593 + 0.833333 NA intron (NM_001350794, intron 5 of 14) MIRb|SINE|MIR 89440 NM_001350799 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 185.167-25 chr21 24099224 24099609 + 0.833333 NA Intergenic L1MEg|LINE|L1 221961 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 166.5-6 chr10 69885076 69885345 + 0.833333 NA intron (NM_080801, intron 6 of 38) L1M5|LINE|L1 83304 NM_001368897 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 153.833-56 chr7 24522733 24522982 + 0.833333 NA Intergenic L1MEc|LINE|L1 -50595 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 244.667-34 chrX 97022296 97022871 + 0.833333 NA intron (NM_007309, intron 17 of 26) intron (NM_007309, intron 17 of 26) 138675 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 166.5-62 chr8 134248307 134248640 + 0.833333 NA Intergenic L1MA3|LINE|L1 -349598 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 179.167-46 chr8 84373487 84373770 + 0.833333 NA intron (NM_001354319, intron 2 of 8) L1PREC2|LINE|L1 -41856 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 164-42 chr3 142838742 142839158 + 0.833333 NA intron (NM_013363, intron 4 of 8) intron (NM_013363, intron 4 of 8) 50133 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 161.5-25 chr2 151548595 151548845 + 0.833333 NA intron (NM_001271208, intron 130 of 182) intron (NM_001271208, intron 130 of 182) 138818 NM_001177665 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 180.167-29 chr2 223903081 223903600 + 0.833333 NA intron (NM_020830, intron 4 of 11) AluSz|SINE|Alu 41995 NM_020830 57590 Hs.368359 NM_020830 ENSG00000085449 WDFY1 FENS-1|FENS1|WDF1|ZFYVE17 WD repeat and FYVE domain containing 1 protein-coding 142.833-7 chr11 44160191 44160416 + 0.833333 NA intron (NM_001178083, intron 8 of 14) L1MC1|LINE|L1 64106 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 200.833-10 chr15 60638950 60639312 + 0.833333 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) -11601 NM_002943 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 161.833-15 chr17 39849134 39849470 + 0.833333 NA intron (NM_012481, intron 1 of 7) AluSx|SINE|Alu 14886 NM_001284514 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 291.833-3 chr14 59024922 59025713 + 0.833333 NA Intergenic L1ME2z|LINE|L1 -163350 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 124.667-96 chr5 67357047 67357462 + 0.833333 NA Intergenic Intergenic -160455 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 148.5-40 chr2 107228874 107229121 + 0.833333 NA intron (NR_049853, intron 2 of 3) L1MEg1|LINE|L1 120528 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 198-29 chr2 104862786 104863235 + 0.833333 NA Intergenic Intergenic 8895 NM_006236 5455 Hs.248158 NM_006236 ENSG00000198914 POU3F3 BRN1|OTF8|brain-1|oct-8 POU class 3 homeobox 3 protein-coding 122.5-106 chrX 95535399 95535595 + 0.833333 NA Intergenic MER57A-int|LTR|ERV1 -472271 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 149.833-23 chr20 4903098 4903463 + 0.833333 NA intron (NM_005116, intron 4 of 16) intron (NM_005116, intron 4 of 16) -79672 NM_014737 9770 Hs.631504 NM_014737 ENSG00000101265 RASSF2 CENP-34|RASFADIN Ras association domain family member 2 protein-coding 121.167-89 chr8 125466628 125467042 + 0.833333 NA Intergenic Intergenic 34626 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 291.333-2 chr12 9820405 9821008 + 0.833333 NA intron (NR_159359, intron 1 of 5) L1PA13|LINE|L1 -6775 NM_001291822 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 113.667-91 chr4 66595384 66595778 + 0.833333 NA Intergenic Intergenic 318757 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 221.5-38 chr8 81315620 81315924 + 0.833333 NA Intergenic Intergenic 35236 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 186-28 chr22 34901638 34902158 + 0.833333 NA intron (NR_138042, intron 2 of 4) intron (NR_138042, intron 2 of 4) 96018 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 169.333-37 chr2 110754513 110754838 + 0.833333 NA intron (NM_001371254, intron 1 of 18) L1MD2|LINE|L1 22102 NM_001371254 177.5-40 chr2 118655428 118655732 + 0.833333 NA Intergenic L1MB5|LINE|L1 -52614 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 118.667 chr1 41932360 41932684 + 0.833333 NA intron (NR_038261, intron 1 of 3) L1MEc|LINE|L1 -13600 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 134.5-23 chr11 114071178 114071498 + 0.833333 NA intron (NM_006006, intron 2 of 6) intron (NM_006006, intron 2 of 6) 8127 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 115.167-66 chr3 38043086 38043289 + 0.833333 NA intron (NM_007335, intron 1 of 36) MIR|SINE|MIR 3979 NM_001321153 9940 Hs.714499 NM_007335 ENSG00000008226 DLEC1 CFAP81|DLC-1|DLC1|F56 DLEC1 cilia and flagella associated protein protein-coding 225.167-21 chr3 130674941 130675543 + 0.833333 NA exon (NM_001102608, exon 36 of 36) exon (NM_001102608, exon 36 of 36) 71587 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 124.667-23 chr12 27394715 27395073 + 0.833333 NA intron (NR_109975, intron 1 of 3) MLT1A|LTR|ERVL-MaLR 51740 NR_109975 101928646 Hs.434269 NR_109975 ENSG00000245311 ARNTL2-AS1 - ARNTL2 antisense RNA 1 ncRNA 127.667-45 chr2 145602480 145602753 + 0.833333 NA Intergenic Intergenic 934649 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 227.333-47 chrX 100001716 100002104 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger 408363 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 180-3 chr1 227108622 227108926 + 0.833333 NA intron (NM_001366019, intron 14 of 36) Tigger3|DNA|TcMar-Tigger 168480 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 250-7 chr12 59137161 59137660 + 0.833333 NA Intergenic Tigger3a|DNA|TcMar-Tigger -216872 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 175.667-71 chr8 121816057 121816348 + 0.833333 NA Intergenic LTR7B|LTR|ERV1 -174762 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 269-2 chr10 108199867 108200404 + 0.833333 NA Intergenic Intergenic -130842 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 122.333-89 chr4 174202413 174202589 + 0.833333 NA intron (NR_125896, intron 1 of 4) intron (NR_125896, intron 1 of 4) 17897 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 188.333-38 chr3 125317018 125317648 + 0.833333 NA intron (NM_001348436, intron 3 of 8) L1ME4b|LINE|L1 39947 NM_001348433 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 116-49 chr2 80526938 80527241 + 0.833333 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 213710 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 138.5-60 chr5 117353821 117354219 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR -61492 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 122.833-72 chr5 101891852 101892184 + 0.833333 NA Intergenic Intergenic 404266 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 160.833-22 chr16 69778339 69778675 + 0.833333 NA intron (NM_007014, intron 2 of 24) intron (NM_007014, intron 2 of 24) 16175 NM_007014 11060 Hs.408458 NM_007014 ENSG00000198373 WWP2 AIP2|WWp2-like WW domain containing E3 ubiquitin protein ligase 2 protein-coding 160.167-2 chr1 105617900 105618420 + 0.833333 NA intron (NR_125955, intron 1 of 3) intron (NR_125955, intron 1 of 3) 775 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 175.667-43 chr3 80592711 80593095 + 0.833333 NA Intergenic Intergenic -171994 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 197.5-16 chr11 93777986 93778288 + 0.833333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -6145 NM_004268 9440 Hs.444931 NM_004268 ENSG00000042429 MED17 CRSP6|CRSP77|DRIP80|SRB4|TRAP80 mediator complex subunit 17 protein-coding 252.833 chr1 241778383 241778973 + 0.833333 NA intron (NM_001367482, intron 21 of 27) L1MCa|LINE|L1 -69513 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 147.833-51 chr4 57390391 57390648 + 0.833333 NA Intergenic MIR|SINE|MIR -35353 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 268-3 chr14 29039053 29039535 + 0.833333 NA Intergenic Intergenic -253507 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 195.5-5 chr10 33782055 33782332 + 0.833333 NA Intergenic AluJr|SINE|Alu -9513 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 135.167-50 chr2 165338095 165338365 + 0.833333 NA intron (NM_001040143, intron 15 of 27) intron (NM_001040143, intron 15 of 27) 44175 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 283.667-16 chr5 120622662 120623039 + 0.833333 NA intron (NM_001308088, intron 3 of 3) intron (NM_001308088, intron 3 of 3) 91386 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 221.667-27 chr4 182208037 182208458 + 0.833333 NA Intergenic Intergenic -35155 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 177.5-15 chr11 107587815 107588277 + 0.833333 NA Intergenic Intergenic -3045 NM_001130037 55531 Hs.495779 NM_018712 ENSG00000110675 ELMOD1 - ELMO domain containing 1 protein-coding 149.333-93 chr8 70360391 70360772 + 0.833333 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 42809 NM_001321713 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 166.667-27 chr20 5617273 5617556 + 0.833333 NA Intergenic AluSg7|SINE|Alu -6408 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 150.667-22 chr12 15774195 15774559 + 0.833333 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 15011 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 195.167-10 chr15 50581698 50582126 + 0.833333 NA intron (NR_149154, intron 28 of 37) L1MEd|LINE|L1 -35246 NM_203494 373509 Hs.677758 NM_203494 ENSG00000170236 USP50 - ubiquitin specific peptidase 50 protein-coding 121.5-102 chr8 84267418 84267662 + 0.833333 NA intron (NM_001354320, intron 2 of 9) L2c|LINE|L2 82874 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 189.667-54 chr9 68890460 68890903 + 0.833333 NA intron (NM_003558, intron 7 of 15) L1ME4a|LINE|L1 85160 NR_110647 101927069 Hs.663405 NR_110647 LOC101927069 - uncharacterized LOC101927069 ncRNA 215.333-48 chr7 136952015 136952371 + 0.833333 NA intron (NM_001006626, intron 3 of 4) intron (NM_001006626, intron 3 of 4) 49026 NR_030165 574443 NR_030165 ENSG00000207597 MIR490 MIRN490|hsa-mir-490|miR-490 microRNA 490 ncRNA 233.333-46 chr9 37931159 37931501 + 0.833333 NA intron (NM_003028, intron 5 of 5) L1MA9|LINE|L1 -26977 NR_024873 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 117.667-63 chr2 107815619 107815993 + 0.833333 NA intron (NR_126370, intron 3 of 4) intron (NR_126370, intron 3 of 4) 10963 NR_024439 729121 Hs.386155 NR_024439 ENSG00000230651 RGPD4-AS1 - RGPD4 antisense RNA 1 (head to head) ncRNA 236.5-6 chr1 222613949 222614358 + 0.833333 NA Intergenic Intergenic -3944 NM_198551 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA SH3 domain ER export factor 3 protein-coding 168-40 chr3 89844034 89844277 + 0.833333 NA Intergenic Intergenic 736534 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 126-74 chr5 71990984 71991163 + 0.833333 NA Intergenic L1ME2|LINE|L1 -116402 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 131.5-3 chr10 14691197 14691436 + 0.833333 NA intron (NM_031453, intron 1 of 4) intron (NM_031453, intron 1 of 4) 83581 NM_001282695 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 136.667-92 chr7 3667369 3667795 + 0.833333 NA intron (NM_152744, intron 4 of 44) L1ME1|LINE|L1 366330 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 141.167-69 chr6 161222189 161222635 + 0.833333 NA intron (NM_020133, intron 2 of 8) intron (NM_020133, intron 2 of 8) 51649 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 114.167-69 chr3 182205441 182205679 + 0.833333 NA Intergenic Intergenic 253196 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 151.333-17 chr11 36018255 36018589 + 0.833333 NA intron (NM_001304264, intron 1 of 5) HSMAR2|DNA|TcMar-Mariner 8324 NR_039769 100616311 NR_039769 ENSG00000263389 MIR3973 - microRNA 3973 ncRNA 114-32 chr12 48397350 48397494 + 0.833333 NA Intergenic L2a|LINE|L2 -46176 NM_001172682 121274 Hs.23492 NM_152320 ENSG00000167528 ZNF641 - zinc finger protein 641 protein-coding 199.333-31 chr4 67023535 67023866 + 0.833333 NA Intergenic Intergenic 398300 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 176.667-56 chr4 57036106 57036374 + 0.833333 NA intron (NM_001553, intron 2 of 4) intron (NM_001553, intron 2 of 4) 57344 NM_000938 5431 Hs.602757 NM_000938 ENSG00000047315 POLR2B POL2RB|RPB2|hRPB140 RNA polymerase II subunit B protein-coding 159.333-23 chr13 22018111 22018604 + 0.833333 NA Intergenic Tigger4|DNA|TcMar-Tigger -140197 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 180.833-40 chr8 30515653 30516065 + 0.833333 NA intron (NM_001008710, intron 5 of 8) AluJo|SINE|Alu -122721 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 149.167-3 chr1 157837476 157837742 + 0.833333 NA intron (NM_001347698, intron 2 of 5) intron (NM_001347698, intron 2 of 5) 4199 NM_005894 922 Hs.134035 NM_005894 ENSG00000073754 CD5L AIM|API6|CT-2|PRO229|SP-ALPHA|Spalpha|hAIM CD5 molecule like protein-coding 137.667-36 chr16 14245462 14245819 + 0.833333 NA exon (NM_001365414, exon 9 of 15) exon (NM_001365414, exon 9 of 15) -56648 NR_132983 100129781 Hs.190748 NR_132983 MIR193BHG - MIR193B host gene ncRNA 157.333-49 chr3 101958040 101958484 + 0.833333 NA intron (NR_026934, intron 1 of 3) AluSx1|SINE|Alu 17403 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 138.333-82 chr4 58138498 58138694 + 0.833333 NA Intergenic Intergenic 397732 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 144.167-60 chr5 122808804 122809085 + 0.833333 NA intron (NM_003100, intron 7 of 14) intron (NM_003100, intron 7 of 14) 33864 NM_003100 6643 Hs.125352 NM_003100 ENSG00000205302 SNX2 TRG-9 sorting nexin 2 protein-coding 192.5-53 chr8 100216699 100217083 + 0.833333 NA intron (NM_003114, intron 12 of 18) intron (NM_003114, intron 12 of 18) 58556 NM_003114 6674 Hs.591866 NM_003114 ENSG00000104450 SPAG1 CILD28|CT140|HEL-S-268|HSD-3.8|SP75|TPIS sperm associated antigen 1 protein-coding 276.166-2 chr5 16115298 16115800 + 0.833333 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 64242 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 183.333-66 chr9 96364413 96364704 + 0.833333 NA intron (NR_104627, intron 2 of 12) intron (NR_104627, intron 2 of 12) 19152 NR_104627 11046 Hs.494556 NM_007001 ENSG00000130958 SLC35D2 HFRC1|SQV7L|UGTrel8|hfrc solute carrier family 35 member D2 protein-coding 169.333-22 chr14 20736655 20736892 + 0.833333 NA Intergenic AluSx|SINE|Alu -9114 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 148.167-76 chr6 137023985 137024405 + 0.833333 NA intron (NM_001278724, intron 1 of 5) intron (NM_001278724, intron 1 of 5) 20117 NM_001278722 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 197.5-17 chr12 1593183 1593632 + 0.833333 NA exon (NM_152441, exon 1 of 2) exon (NM_152441, exon 1 of 2) 1174 NM_152441 144699 Hs.367956 NM_152441 ENSG00000171823 FBXL14 Fbl14 F-box and leucine rich repeat protein 14 protein-coding 202.833-2 chr10 82973984 82974375 + 0.833333 NA intron (NR_163253, intron 9 of 10) intron (NR_163253, intron 9 of 10) 702910 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 193.167-19 chr2 17117293 17117788 + 0.833333 NA Intergenic Intergenic 400900 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 211.833-10 chr15 64083414 64083732 + 0.833333 NA intron (NM_032231, intron 2 of 4) intron (NM_032231, intron 2 of 4) 10265 NM_032231 84191 Hs.439548 NM_032231 ENSG00000166797 CIAO2A CIA2A|FAM96A cytosolic iron-sulfur assembly component 2A protein-coding 203.167-10 chr11 85770984 85771441 + 0.833333 NA intron (NM_001365826, intron 1 of 18) intron (NM_001365826, intron 1 of 18) -13143 NM_001162953 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 186-55 chr7 109826806 109827047 + 0.833333 NA Intergenic L1MDb|LINE|L1 133287 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 133.333-65 chr20 43791612 43791805 + 0.833333 NA Intergenic AluSz6|SINE|Alu -64706 NM_176791 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 226.833-23 chr8 129936260 129936694 + 0.833333 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) 3334 NM_001353313 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 154.833-3 chr1 87721928 87722203 + 0.833333 NA Intergenic L1MB1|LINE|L1 -350410 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 193.5-18 chr17 57201832 57202299 + 0.833333 NA Intergenic AluJr|SINE|Alu -53786 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 158.833-11 chr11 88485357 88485610 + 0.833333 NA Intergenic L1P4d|LINE|L1 -19093 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 135-46 chr2 192610004 192610197 + 0.833333 NA Intergenic MIRc|SINE|MIR -139745 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 221.667-28 chr5 16566498 16566917 + 0.833333 NA intron (NM_001034850, intron 2 of 8) L4_C_Mam|LINE|RTE-X -49219 NR_109946 101929524 Hs.734029 NR_109946 ENSG00000246214 LOC101929524 - uncharacterized LOC101929524 ncRNA 136-31 chr18 3106702 3106961 + 0.833333 NA intron (NM_019856, intron 21 of 36) AluJo|SINE|Alu -94884 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 164.5-63 chr8 132365603 132366027 + 0.833333 NA intron (NM_004519, intron 1 of 14) AluJr|SINE|Alu 81447 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 226.333-18 chr2 39260530 39260915 + 0.833333 NA exon (NM_001270425, exon 28 of 33) exon (NM_001270425, exon 28 of 33) -16739 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 146.167-41 chr3 152497441 152497718 + 0.833333 NA Intergenic Intergenic -156589 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 133.833-60 chr5 17256980 17257261 + 0.833333 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 39489 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 229.167-29 chr6 38252536 38252966 + 0.833333 NA intron (NM_052893, intron 10 of 11) intron (NM_052893, intron 10 of 11) -228845 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 212-19 chr2 117867291 117867786 + 0.833333 NA Intergenic L1MA3|LINE|L1 33807 NR_158150 107985939 NR_158150 LOC107985939 - uncharacterized LOC107985939 ncRNA 117.333-67 chr3 18502352 18502501 + 0.833333 NA intron (NR_125803, intron 4 of 6) intron (NR_125803, intron 4 of 6) -56834 NM_001322872 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 294.833-4 chr4 30349001 30349972 + 0.833333 NA Intergenic MER4D|LTR|ERV1 -370883 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 190.667-49 chr7 9836005 9836344 + 0.833333 NA Intergenic Intergenic 201904 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 150-79 chr7 96458128 96458424 + 0.833333 NA Intergenic L2|LINE|L2 45247 NM_001201451 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 143-30 chr17 47605131 47605409 + 0.833333 NA intron (NM_001330257, intron 17 of 23) intron (NM_001330257, intron 17 of 23) -44649 NM_002265 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 185.167-11 chr12 23580291 23580619 + 0.833333 NA intron (NM_152989, intron 12 of 17) intron (NM_152989, intron 12 of 17) 4131 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 131.833-55 chr5 68489505 68489734 + 0.833333 NA Intergenic Intergenic 197042 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 215.167-19 chr4 30679328 30679748 + 0.833333 NA Intergenic LTR16C|LTR|ERVL -40831 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 168.667-52 chr3 7216189 7216525 + 0.833333 NA intron (NM_000844, intron 2 of 9) (GTATCT)n|Simple_repeat|Simple_repeat 318927 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 132.167-67 chr8 72817409 72817647 + 0.833333 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 85483 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 252.167-7 chr17 73060979 73061472 + 0.833333 NA intron (NM_001352692, intron 3 of 9) AluSg|SINE|Alu 31463 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 237.667-15 chr6 130694227 130694702 + 0.833333 NA Intergenic Intergenic -132941 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 160.333-47 chr4 123962773 123963058 + 0.833333 NA Intergenic Intergenic 188651 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 146-20 chr14 66986300 66986541 + 0.833333 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -203020 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 139.5-42 chr3 162300651 162300977 + 0.833333 NA Intergenic Intergenic 804006 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 171.333-12 chr10 23336256 23336714 + 0.833333 NA intron (NM_153714, intron 1 of 4) L1MC4|LINE|L1 -7472 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 237.167-18 chr5 95586909 95587411 + 0.833333 NA intron (NM_198150, intron 5 of 7) intron (NM_198150, intron 5 of 7) 32059 NM_198150 153642 Hs.585051 NM_198150 ENSG00000164291 ARSK TSULF arylsulfatase family member K protein-coding 135.5-28 chr14 51583284 51583458 + 0.833333 NA intron (NM_001042481, intron 2 of 14) intron (NM_001042481, intron 2 of 14) 16581 NR_047477 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 118.167-28 chr17 75477583 75477854 + 0.833333 NA intron (NM_001321148, intron 1 of 30) intron (NM_001321148, intron 1 of 30) 1181 NM_001351203 9772 Hs.514474 NM_014738 ENSG00000177728 TMEM94 IDDCDF|KIAA0195 transmembrane protein 94 protein-coding 128-98 chrX 93540216 93540483 + 0.833333 NA Intergenic Intergenic 133229 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 140.667-91 chr8 138075074 138075297 + 0.833333 NA intron (NR_161374, intron 1 of 7) intron (NR_161374, intron 1 of 7) 8360 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 159.167-58 chr6 83759007 83759222 + 0.833333 NA Intergenic Intergenic 49672 NR_136251 105377879 Hs.736886 NR_136251 LOC105377879 - uncharacterized LOC105377879 ncRNA 150-15 chr12 111876132 111876660 + 0.833333 NA intron (NM_003668, intron 7 of 13) L1PA15|LINE|L1 -22667 NR_036636 8759 Hs.661708 NR_036636 ADAM1A ADAM1|ADAM1P|FTNAP|Ftna|PH-30a ADAM metallopeptidase domain 1A (pseudogene) pseudo 149-69 chr5 123479041 123479370 + 0.833333 NA Intergenic Intergenic -32894 NM_001031812 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 160-12 chr10 43157908 43158353 + 0.833333 NA intron (NM_018590, intron 2 of 7) intron (NM_018590, intron 2 of 7) 3233 NM_001319656 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 149.333-29 chr14 42813339 42813639 + 0.833333 NA Intergenic L1ME4a|LINE|L1 1206633 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 194.5-19 chr2 122878072 122878458 + 0.833333 NA Intergenic Intergenic 195216 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 377-5 chr5 25432717 25433428 + 0.833333 NA Intergenic Intergenic 242119 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 183.667-83 chr8 137596208 137596595 + 0.833333 NA Intergenic Intergenic -182813 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 179.5-8 chr14 67090108 67090552 + 0.833333 NA intron (NM_001024218, intron 11 of 21) Tigger4b|DNA|TcMar-Tigger -99110 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 194-53 chr7 39068363 39068827 + 0.833333 NA intron (NM_007252, intron 2 of 10) intron (NM_007252, intron 2 of 10) -55028 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 136.833-70 chr7 89849082 89849318 + 0.833333 NA Intergenic L1ME3D|LINE|L1 -270200 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 175.333-56 chr6 8040042 8040450 + 0.833333 NA intron (NM_001199323, intron 2 of 3) MIRc|SINE|MIR 24143 NM_201280 63915 Hs.719272 NM_201280 ENSG00000188428 BLOC1S5 BLOS5|MU|MUTED biogenesis of lysosomal organelles complex 1 subunit 5 protein-coding 119.167-100 chrUn_KI270757v1 65674 65890 + 0.833333 NA NA ALR/Alpha|Satellite|centr NA NA 175.333-60 chr7 62795131 62795533 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 508724 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 139-51 chr5 60773111 60773308 + 0.833333 NA intron (NM_024930, intron 3 of 8) Charlie13b|DNA|hAT-Charlie 71060 NM_001297618 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 135-33 chr2 7483180 7483463 + 0.833333 NA Intergenic L1M2|LINE|L1 62060 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 292.833-7 chr15 56706857 56707413 + 0.833333 NA 5' UTR (NM_001288588, exon 3 of 22) 5' UTR (NM_001288588, exon 3 of 22) 26951 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 146.333-27 chr13 79779927 79780303 + 0.833333 NA Intergenic Intergenic -24271 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 257.667-13 chr4 44862211 44862615 + 0.833333 NA Intergenic Intergenic -135779 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 276.333-20 chr6 153750362 153750996 + 0.833333 NA Intergenic AluSc5|SINE|Alu -259817 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 188-24 chr17 59067620 59067989 + 0.833333 NA intron (NR_148346, intron 9 of 23) AluSp|SINE|Alu 39076 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 219.833-11 chr2 58036182 58036631 + 0.833333 NA intron (NM_001288838, intron 3 of 15) intron (NM_001288838, intron 3 of 15) -10236 NM_001288836 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 265-15 chr2 125392980 125393446 + 0.833333 NA Intergenic Intergenic 724772 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 187-27 chr3 19837726 19838038 + 0.833333 NA Intergenic L1PREC2|LINE|L1 96335 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 183.333-31 chr2 150090450 150090687 + 0.833333 NA Intergenic Intergenic 166439 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 287.833-3 chr14 72906488 72906878 + 0.833333 NA Intergenic Intergenic -12567 NM_001280543 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 122.833-47 chr2 121751434 121751718 + 0.833333 NA Intergenic AluJr|SINE|Alu -3969 NR_048558 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 117.333-39 chr18 21923401 21923683 + 0.833333 NA Intergenic AluJr|SINE|Alu -92136 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 299-6 chr12 112035283 112036019 + 0.833333 NA intron (NM_024953, intron 22 of 23) intron (NM_024953, intron 22 of 23) 2064 NR_037430 100500889 NR_037430 ENSG00000266370 MIR3657 - microRNA 3657 ncRNA 154.667-71 chr8 134223739 134224169 + 0.833333 NA Intergenic Intergenic 337458 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 208.667-36 chr5 124549881 124550352 + 0.833333 NA Intergenic Intergenic -111596 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 205.5-45 chr8 121126780 121127187 + 0.833333 NA Intergenic Intergenic -314937 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 115-66 chr5 131489507 131489715 + 0.833333 NA exon (NM_001164386, exon 15 of 29) exon (NM_001164386, exon 15 of 29) 145618 NM_001164386 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 328.5-8 chr5 58086057 58086691 + 0.833333 NA Intergenic Intergenic 35967 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 144.667-14 chr10 15524696 15525038 + 0.833333 NA intron (NM_001291494, intron 27 of 28) intron (NM_001291494, intron 27 of 28) -153578 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 129.667-68 chr3 124518084 124518292 + 0.833333 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -66470 NM_007064 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 233.333-6 chr14 40799317 40799816 + 0.833333 NA Intergenic Intergenic -155145 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 134.167-38 chr2 32006078 32006323 + 0.833333 NA intron (NR_126034, intron 1 of 6) intron (NR_126034, intron 1 of 6) 4464 NM_001137602 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 171.333-2 chr1 39535708 39536101 + 0.833333 NA intron (NR_144357, intron 8 of 11) L1MB8|LINE|L1 21038 NR_132962 192217 Hs.472491 NR_132962 ENSG00000237624 OXCT2P1 OXCT2P 3-oxoacid CoA-transferase 2 pseudogene 1 pseudo 263.167-15 chr8 91314687 91315129 + 0.833333 NA intron (NM_134266, intron 4 of 18) intron (NM_134266, intron 4 of 18) 65589 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 221-23 chr5 116556741 116557102 + 0.833333 NA intron (NM_001300780, intron 1 of 19) intron (NM_001300780, intron 1 of 19) -17497 NR_147170 105379132 NR_147170 SEMA6A-AS2 - SEMA6A antisense RNA 2 ncRNA 225.833-19 chr8 74774260 74774831 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR -49989 NM_015886 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 139-34 chr20 809118 809481 + 0.833333 NA Intergenic MER4-int|LTR|ERV1 -24416 NM_001042353 83541 Hs.574822 NM_031424 ENSG00000125898 FAM110A C20orf55|F10|bA371L19.3 family with sequence similarity 110 member A protein-coding 295.5-4 chr2 173608063 173608688 + 0.833333 NA Intergenic Intergenic 253503 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 200.5-4 chr11 93193009 93193280 + 0.833333 NA intron (NM_152313, intron 1 of 10) intron (NM_152313, intron 1 of 10) 4282 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 165.5-60 chr8 32357364 32357765 + 0.833333 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -83182 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 214.167-23 chr4 39898167 39898516 + 0.833333 NA 3' UTR (NM_001100400, exon 16 of 16) 3' UTR (NM_001100400, exon 16 of 16) 79570 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 217.5-31 chr22 49376532 49377018 + 0.833333 NA Intergenic Intergenic 166691 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 125.833-53 chr21 17543867 17544201 + 0.833333 NA intron (NM_001207066, intron 1 of 7) intron (NM_001207066, intron 1 of 7) 30991 NM_001207064 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR CXADR Ig-like cell adhesion molecule protein-coding 158.333-77 chr9 31844553 31844919 + 0.833333 NA Intergenic Intergenic -463246 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 149.5-27 chr17 32799615 32799914 + 0.833333 NA intron (NM_015194, intron 1 of 21) L1MA7|LINE|L1 77360 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 214-44 chr6 137212749 137213136 + 0.833333 NA intron (NM_000416, intron 1 of 6) intron (NM_000416, intron 1 of 6) 6254 NM_001363527 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 196-50 chr4 54602237 54602512 + 0.833333 NA TTS (NR_134657) TTS (NR_134657) 4757 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 144.333-10 chr1 192056289 192056746 + 0.833333 NA Intergenic Charlie15a|DNA|hAT-Charlie -101945 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 141.833-8 chr11 69799557 69799867 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR 19704 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 195.833-18 chr20 39894952 39895297 + 0.833333 NA Intergenic Intergenic -109337 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 114.833-26 chr17 68713591 68713787 + 0.833333 NA Intergenic Intergenic 85535 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 270-15 chr9 131926374 131926781 + 0.833333 NA intron (NM_004269, intron 4 of 7) intron (NM_004269, intron 4 of 7) 153290 NM_004269 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 315-5 chr3 55070244 55070764 + 0.833333 NA intron (NM_018398, intron 35 of 37) intron (NM_018398, intron 35 of 37) -103402 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 289.5-8 chr4 7407952 7408342 + 0.833333 NA intron (NM_020777, intron 2 of 26) L1PB4|LINE|L1 26783 NM_001085382 768239 Hs.662523 NM_001085382 ENSG00000178597 PSAPL1 - prosaposin like 1 (gene/pseudogene) protein-coding 136.833-39 chr3 28289745 28290133 + 0.833333 NA intron (NM_182523, intron 2 of 3) intron (NM_182523, intron 2 of 3) 48320 NM_001331189 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 189-40 chr5 45778011 45778374 + 0.833333 NA Intergenic L2|LINE|L2 -81812 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 176.167-29 chr3 89907626 89908033 + 0.833333 NA Intergenic Intergenic 800208 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 129.5-67 chr4 161907705 161907916 + 0.833333 NA intron (NM_001128428, intron 4 of 14) intron (NM_001128428, intron 4 of 14) -114923 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 197.833-4 chr10 74555704 74556184 + 0.833333 NA intron (NM_001369123, intron 7 of 9) intron (NM_001369123, intron 7 of 9) -26620 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 181-56 chr6 134939591 134940070 + 0.833333 NA intron (NM_170771, intron 3 of 5) L1PA10|LINE|L1 10271 NM_001193480 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 136.167-38 chr2 67002993 67003278 + 0.833333 NA Intergenic Intergenic -80645 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 122.833-9 chr10 48744487 48744697 + 0.833333 NA intron (NM_020945, intron 12 of 61) L1MEd|LINE|L1 59129 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 180.833-44 chr8 124749548 124749821 + 0.833333 NA Intergenic L2b|LINE|L2 -21177 NM_014751 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 135-59 chr3 78847666 78847890 + 0.833333 NA intron (NM_002941, intron 4 of 30) MIRc|SINE|MIR 171681 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 161.167-9 chr11 94653869 94654244 + 0.833333 NA intron (NR_135096, intron 4 of 6) HERV4_I-int|LTR|ERV1 86299 NR_135093 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 177-34 chr2 119780949 119781259 + 0.833333 NA intron (NM_002830, intron 1 of 26) L1MC4|LINE|L1 21182 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 218.667-46 chr8 120343634 120344041 + 0.833333 NA intron (NM_021110, intron 44 of 47) intron (NM_021110, intron 44 of 47) 101313 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 142.833-14 chr14 33849449 33849921 + 0.833333 NA Intergenic Intergenic 101389 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 153.667-80 chr8 120619133 120619606 + 0.833333 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) -141884 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 116.167-68 chr6 165111018 165111290 + 0.833333 NA Intergenic L1MA8|LINE|L1 198451 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 187.667-24 chr17 59901497 59901800 + 0.833333 NA intron (NM_001272044, intron 2 of 15) intron (NM_001272044, intron 2 of 15) 8527 NR_161457 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 226.5-22 chr3 20087202 20087679 + 0.833333 NA intron (NM_003884, intron 2 of 17) L1MA5|LINE|L1 46994 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 173.833-3 chr1 115170785 115171064 + 0.833333 NA Intergenic MLT1F2|LTR|ERVL-MaLR -81421 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 161.833-10 chr14 58159185 58159476 + 0.833333 NA Intergenic Intergenic -7117 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 226.167-19 chr3 105186416 105186731 + 0.833333 NA Intergenic L1PA5|LINE|L1 -180140 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 187.833-23 chr3 7493522 7493845 + 0.833333 NA intron (NM_000844, intron 7 of 9) L1MDb|LINE|L1 41601 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 124.333-23 chr13 62552298 62552556 + 0.833333 NA Intergenic Intergenic 228770 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 152.333-7 chr10 23822903 23823192 + 0.833333 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 128320 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 132.333-33 chr12 95095939 95096200 + 0.833333 NA intron (NM_018351, intron 14 of 20) intron (NM_018351, intron 14 of 20) -22451 NM_001032287 7181 Hs.108301 NM_003297 ENSG00000120798 NR2C1 TR2 nuclear receptor subfamily 2 group C member 1 protein-coding 191.5-12 chr11 125809037 125809382 + 0.833333 NA Intergenic L1MEg|LINE|L1 21082 NM_001129883 100169851 Hs.131278 NM_001129883 ENSG00000236027 PATE3 HEL-127|PATE-DJ prostate and testis expressed 3 protein-coding 156-11 chr10 104454016 104454276 + 0.833333 NA intron (NM_001008723, intron 17 of 17) intron (NM_001008723, intron 17 of 17) 26129 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 217.667 chr1 11895512 11895891 + 0.833333 NA Intergenic FLAM_C|SINE|Alu -12453 NR_002754 26829 NR_002754 ENSG00000199347 RNU5E-1 RNU5E|U5E RNA, U5E small nuclear 1 snRNA 222.5-17 chr22 27838123 27838511 + 0.833333 NA Intergenic L1ME3C|LINE|L1 -36561 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 215.833-12 chr2 41775947 41776274 + 0.833333 NA Intergenic MSTB|LTR|ERVL-MaLR -101445 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 183.167-33 chr3 81926440 81926693 + 0.833333 NA Intergenic Intergenic -59576 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 160.333-55 chr7 48649676 48649933 + 0.833333 NA Intergenic Intergenic -274743 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 281.167-2 chr12 20492842 20493397 + 0.833333 NA intron (NM_000921, intron 1 of 15) MIR|SINE|MIR -78745 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 244.333-31 chr8 82254174 82254585 + 0.833333 NA Intergenic Intergenic -412093 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 217.5-50 chr8 112468793 112469267 + 0.833333 NA intron (NM_052900, intron 31 of 68) intron (NM_052900, intron 31 of 68) -174463 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 180.833-25 chr3 28018643 28018987 + 0.833333 NA Intergenic Intergenic -184679 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 195.333-11 chr15 76961179 76961676 + 0.833333 NA Intergenic Intergenic 29678 NM_002902 5955 Hs.79088 NM_002902 ENSG00000117906 RCN2 E6BP|ERC-55|ERC55|TCBP49 reticulocalbin 2 protein-coding 183.5-61 chr9 32231797 32232156 + 0.833333 NA Intergenic L1MA4A|LINE|L1 -152627 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 157.333-20 chr14 66934935 66935142 + 0.833333 NA intron (NM_020806, intron 8 of 22) L3|LINE|CR1 -254402 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 128-15 chr10 86268082 86268399 + 0.833333 NA intron (NM_017551, intron 2 of 15) MLT1I|LTR|ERVL-MaLR -3452 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 150.667-58 chr21 44606663 44606968 + 0.833333 NA intron (NM_144991, intron 1 of 11) L1MA7|LINE|L1 -5264 NM_198695 386681 Hs.528021 NM_198695 ENSG00000187766 KRTAP10-8 KAP10.8|KRTAP18-8|KRTAP18.8 keratin associated protein 10-8 protein-coding 170-34 chr18 66632950 66633379 + 0.833333 NA Intergenic L1M5|LINE|L1 -29074 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 160.333-36 chr3 89744595 89744888 + 0.833333 NA Intergenic L1MA9|LINE|L1 637120 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 277.5-7 chr2 223772933 223773336 + 0.833333 NA intron (NR_110906, intron 2 of 3) intron (NR_110906, intron 2 of 3) 64448 NR_110906 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 231-15 chr2 59207929 59208343 + 0.833333 NA Intergenic Intergenic -9572 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 163.333-34 chr18 21174074 21174417 + 0.833333 NA Intergenic L1ME1|LINE|L1 -62432 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 126.667-37 chr2 30434830 30435220 + 0.833333 NA Intergenic Intergenic -12221 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 158.5-42 chr2 137628613 137629039 + 0.833333 NA intron (NM_001316349, intron 20 of 27) intron (NM_001316349, intron 20 of 27) 299106 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 235.667-14 chr3 26097993 26098324 + 0.833333 NA Intergenic LTR16C|LTR|ERVL -224463 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 124.833-35 chr2 25460053 25460213 + 0.833333 NA intron (NM_033147, intron 10 of 19) L2|LINE|L2 -117543 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 155.833-32 chr2 217369532 217369938 + 0.833333 NA intron (NR_026597, intron 8 of 12) L2|LINE|L2 87002 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 132.333-69 chr3 65428501 65428758 + 0.833333 NA intron (NM_001365904, intron 12 of 24) L2a|LINE|L2 -465187 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 224.333-22 chr3 98533902 98534211 + 0.833333 NA 3' UTR (NM_005290, exon 1 of 1) 3' UTR (NM_005290, exon 1 of 1) 2078 NM_005290 2838 Hs.162987 NM_005290 ENSG00000154165 GPR15 BOB G protein-coupled receptor 15 protein-coding 118.667-77 chr3 53580711 53580907 + 0.833333 NA intron (NM_001128840, intron 3 of 47) intron (NM_001128840, intron 3 of 47) 86198 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 242.333-24 chr8 83608505 83608875 + 0.833333 NA Intergenic L1MEh|LINE|L1 204932 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 198-21 chr15 37394454 37394835 + 0.833333 NA Intergenic Intergenic -293333 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 146.5-28 chr14 65230612 65230872 + 0.833333 NA Intergenic Intergenic -8395 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 170.667-33 chr2 74125842 74126140 + 0.833333 NA Intergenic FLAM_A|SINE|Alu 21921 NM_001035505 388962 Hs.61472 NM_212552 ENSG00000163170 BOLA3 MMDS2 bolA family member 3 protein-coding 200.167-32 chr3 22600307 22600589 + 0.833333 NA Intergenic L1MB8|LINE|L1 602130 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 219.5-35 chr5 177011250 177011531 + 0.833333 NA Intergenic AluJr|SINE|Alu -4596 NR_146149 51720 Hs.232721 NM_016290 ENSG00000087206 UIMC1 RAP80|X2HRIP110 ubiquitin interaction motif containing 1 protein-coding 182.5 chr1 181485079 181485359 + 0.833333 NA intron (NM_001205293, intron 1 of 47) intron (NM_001205293, intron 1 of 47) 1702 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 155.333-2 chr1 49302937 49303295 + 0.833333 NA intron (NR_136623, intron 2 of 12) L1PA10|LINE|L1 45705 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 135.833-61 chr5 137189623 137189939 + 0.833333 NA intron (NM_004598, intron 3 of 10) Tigger1|DNA|TcMar-Tigger 61584 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 160.667-23 chr14 34070724 34071105 + 0.833333 NA Intergenic Intergenic -119840 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 231.833-12 chr3 42677282 42677717 + 0.833333 NA Intergenic AluSz|SINE|Alu -8038 NM_152393 131377 Hs.350288 NM_152393 ENSG00000157119 KLHL40 KBTBD5|NEM8|SRYP|SYRP kelch like family member 40 protein-coding 189.5-41 chr4 27465804 27466196 + 0.833333 NA Intergenic Intergenic 248521 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 202-22 chr21 27688377 27688782 + 0.833333 NA Intergenic L1M4|LINE|L1 -33800 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 133.167-75 chrX 118524380 118524684 + 0.833333 NA intron (NM_144658, intron 1 of 52) L1MB4|LINE|L1 28623 NM_144658 139818 Hs.368203 NM_144658 ENSG00000147251 DOCK11 ACG|ZIZ2|bB128O4.1 dedicator of cytokinesis 11 protein-coding 270.667-6 chr17 59383754 59384259 + 0.833333 NA intron (NM_001005404, intron 2 of 4) L1ME2|LINE|L1 17923 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 147.5-48 chr2 141847845 141848177 + 0.833333 NA intron (NM_018557, intron 1 of 90) L1M5|LINE|L1 283690 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 142.5-21 chr14 34785935 34786155 + 0.833333 NA intron (NM_182648, intron 12 of 25) intron (NM_182648, intron 12 of 25) -71222 NR_028131 1073 Hs.180141 NM_021914 ENSG00000165410 CFL2 NEM7 cofilin 2 protein-coding 145.833-9 chr1 231563584 231563854 + 0.833333 NA intron (NR_028398, intron 3 of 10) L2|LINE|L2 35050 NM_005999 7257 Hs.13318 NM_005999 ENSG00000116918 TSNAX C3PO|TRAX translin associated factor X protein-coding 238.5-4 chr10 28958769 28959177 + 0.833333 NA Intergenic L1MA6|LINE|L1 112565 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 155.333-101 chr9 30321683 30321926 + 0.833333 NA Intergenic Intergenic 86650 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 117.833-18 chr12 30321682 30321835 + 0.833333 NA Intergenic Intergenic 355486 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 199.333-22 chr2 148651518 148652037 + 0.833333 NA intron (NM_015630, intron 1 of 13) MIRb|SINE|MIR 7026 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 170.333-23 chr14 48490456 48490802 + 0.833333 NA Intergenic Intergenic -695615 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 286.5-2 chr1 77452926 77453269 + 0.833333 NA intron (NM_012093, intron 8 of 13) L1ME3E|LINE|L1 170010 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 238.167-16 chr3 197852315 197852729 + 0.833333 NA intron (NM_001365717, intron 12 of 19) intron (NM_001365717, intron 12 of 19) 61268 NR_158582 84859 Hs.518414 NM_032773 ENSG00000186001 LRCH3 - leucine rich repeats and calponin homology domain containing 3 protein-coding 175.167-9 chr10 50235378 50235797 + 0.833333 NA intron (NM_001143974, intron 4 of 18) intron (NM_001143974, intron 4 of 18) 13023 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 120.333-29 chr11 113394609 113394811 + 0.833333 NA intron (NM_178510, intron 2 of 7) MIR|SINE|MIR 6931 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 404.666-2 chr2 60741949 60742608 + 0.833333 NA Intergenic AluSz|SINE|Alu -13990 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 164.5-44 chr5 59572079 59572393 + 0.833333 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 14262 NM_001349242 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 206.5-3 chr1 187620067 187620414 + 0.833333 NA Intergenic MamRep4096|DNA|hAT? 176612 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 131.167-65 chr5 112087339 112087514 + 0.833333 NA Intergenic MamGypLTR1b|LTR|Gypsy -73100 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 168.833-41 chr4 101562672 101562907 + 0.833333 NA Intergenic Intergenic 215012 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 114.167-62 chr3 14246925 14247105 + 0.833333 NA Intergenic Intergenic 68198 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 116.667-56 chr2 76221466 76221640 + 0.833333 NA Intergenic L1MB4|LINE|L1 -510638 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 176.5-69 chr9 96148996 96149334 + 0.833333 NA Intergenic Intergenic -32754 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 133.167-40 chr3 116280900 116281104 + 0.833333 NA intron (NM_001318915, intron 1 of 8) L1MEg|LINE|L1 -79022 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 139.667-50 chr2 48947216 48947648 + 0.833333 NA Intergenic Intergenic -112171 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 134.333-23 chr12 11735297 11735648 + 0.833333 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 85618 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 155.333-81 chr5 81657372 81657750 + 0.833333 NA intron (NM_012446, intron 1 of 16) Tigger15a|DNA|TcMar-Tigger 93692 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 120.333-2 chr1 28462191 28462364 + 0.833333 NA intron (NM_023923, intron 3 of 12) AluSx1|SINE|Alu 24127 NM_023923 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 126.667-29 chr18 9039525 9039684 + 0.833333 NA Intergenic Intergenic -63095 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 144.333-5 chr1 111574778 111575071 + 0.833333 NA intron (NM_001370216, intron 1 of 7) intron (NM_001370216, intron 1 of 7) -10921 NM_001302680 57413 Hs.281342 NM_020683 ENSG00000121933 TMIGD3 AD026 transmembrane and immunoglobulin domain containing 3 protein-coding 190.333-36 chr2 221170464 221170900 + 0.833333 NA Intergenic Intergenic 401622 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 199 chr1 41029380 41029827 + 0.833333 NA intron (NM_001172218, intron 14 of 15) intron (NM_001172218, intron 14 of 15) -7848 NM_001168247 200172 Hs.194609 NM_144990 ENSG00000171790 SLFNL1 - schlafen like 1 protein-coding 189.667-24 chr17 77196102 77196351 + 0.833333 NA exon (NM_001143998, exon 8 of 17) exon (NM_001143998, exon 8 of 17) 11013 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 138.833-57 chr3 181367384 181367818 + 0.833333 NA intron (NR_075091, intron 3 of 7) L1MEg|LINE|L1 74885 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 193.5-39 chr4 73780589 73780874 + 0.833333 NA Intergenic Intergenic 40162 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 241.833-4 chr10 122784782 122785173 + 0.833333 NA intron (NR_003570, intron 19 of 27) intron (NR_003570, intron 19 of 27) 28283 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 179.5-39 chr8 65655489 65655859 + 0.833333 NA intron (NM_001145839, intron 1 of 6) AluSx|SINE|Alu 10940 NM_014637 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 252.5-10 chr16 65845488 65845818 + 0.833333 NA Intergenic Intergenic -269353 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 178-31 chr3 53017261 53017683 + 0.833333 NA intron (NM_016329, intron 1 of 20) L2a|LINE|L2 28601 NM_016329 51460 Hs.343679 NM_016329 ENSG00000163935 SFMBT1 RU1|SFMBT|hSFMBT Scm like with four mbt domains 1 protein-coding 179.333-26 chr18 45347631 45348004 + 0.833333 NA intron (NM_001371319, intron 4 of 23) intron (NM_001371319, intron 4 of 23) 134822 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 195.5-16 chr14 47488496 47488735 + 0.833333 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -145369 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 133.5 chr1 22508329 22508513 + 0.833333 NA intron (NM_001083621, intron 8 of 18) intron (NM_001083621, intron 8 of 18) -55068 NM_020526 2046 Hs.283613 NM_020526 ENSG00000070886 EPHA8 EEK|EK3|HEK3 EPH receptor A8 protein-coding 174-45 chr4 122603375 122603864 + 0.833333 NA Intergenic MER61D|LTR|ERV1 -15364 NR_104126 100996941 Hs.439487 NR_104126 ENSG00000227145 IL21-AS1 - IL21 antisense RNA 1 ncRNA 189.167-12 chr12 13434997 13435442 + 0.833333 NA Intergenic Intergenic -58474 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 150.167-63 chr7 123500219 123500457 + 0.833333 NA intron (NR_104245, intron 6 of 11) L1MEd|LINE|L1 32610 NR_104244 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 231-22 chr4 75320328 75320705 + 0.833333 NA Intergenic L2|LINE|L2 -33560 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 220-20 chr4 47473685 47473992 + 0.833333 NA Intergenic Intergenic -10108 NM_001329668 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 186.667-49 chr22 34155877 34156311 + 0.833333 NA Intergenic AluSz|SINE|Alu -233206 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 241.167-7 chr2 226451219 226451700 + 0.833333 NA Intergenic Intergenic 207334 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 237.333-24 chr3 45677490 45677890 + 0.833333 NA TTS (NR_033947) TTS (NR_033947) 11192 NR_033947 644714 Hs.712889 NR_033947 LIMD1-AS1 - LIMD1 antisense RNA 1 ncRNA 181.333 chr1 67394305 67394557 + 0.833333 NA intron (NM_001258215, intron 13 of 13) intron (NM_001258215, intron 13 of 13) 35971 NM_001018068 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 277.333-10 chr3 178234021 178234513 + 0.833333 NA Intergenic Intergenic -184934 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 204.5-6 chr10 93443008 93443287 + 0.833333 NA intron (NM_013451, intron 3 of 53) AluSx|SINE|Alu 39187 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 121.167-7 chr1 99132058 99132221 + 0.833333 NA intron (NR_033940, intron 1 of 2) intron (NR_033940, intron 1 of 2) -127278 NM_001037317 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 114.333-18 chr10 104021196 104021406 + 0.833333 NA intron (NM_001304743, intron 16 of 17) intron (NM_001304743, intron 16 of 17) 26885 NR_030760 100126326 NR_030760 ENSG00000283788 MIR936 MIRN936|hsa-mir-936 microRNA 936 ncRNA 160.667-59 chr4 32131207 32131526 + 0.833333 NA intron (NR_125936, intron 1 of 2) Tigger2|DNA|TcMar-Tigger -108944 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 150-12 chr11 115719364 115719675 + 0.833333 NA Intergenic Intergenic 15243 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 118.667-67 chr2 205264562 205264861 + 0.833333 NA intron (NM_057177, intron 16 of 21) intron (NM_057177, intron 16 of 21) -417789 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 119.167-39 chr2 27576314 27576460 + 0.833333 NA promoter-TSS (NM_032266) promoter-TSS (NM_032266) -135 NM_032266 84226 Hs.131021 NM_032266 ENSG00000221843 C2orf16 - chromosome 2 open reading frame 16 protein-coding 136.667-41 chr2 54472915 54473159 + 0.833333 NA intron (NM_003128, intron 1 of 35) intron (NM_003128, intron 1 of 35) 16710 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 236-28 chr8 77253020 77253416 + 0.833333 NA Intergenic Intergenic -197479 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 377.5-3 chr4 115593867 115594455 + 0.833333 NA Intergenic L2|LINE|L2 -480541 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 300.333-13 chr3 14814320 14814866 + 0.833333 NA Intergenic L2a|LINE|L2 -3179 NR_135245 152274 Hs.434128 NR_135245 ENSG00000260902 LINC02011 - long intergenic non-protein coding RNA 2011 ncRNA 287-4 chr18 5982160 5982885 + 0.833333 NA intron (NR_158609, intron 15 of 17) intron (NR_158609, intron 15 of 17) -86568 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 114.333-124 chr8 128941662 128941899 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR 24221 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 171-9 chr11 96208881 96209142 + 0.833333 NA intron (NM_032427, intron 1 of 4) MER5A1|DNA|hAT-Charlie -132427 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 248.167-4 chr1 222734087 222734544 + 0.833333 NA 3' UTR (NM_001288579, exon 12 of 12) 3' UTR (NM_001288579, exon 12 of 12) -2901 NM_207468 400823 Hs.697608 NM_207468 ENSG00000197520 FAM177B - family with sequence similarity 177 member B protein-coding 138.167-25 chr15 95308361 95308577 + 0.833333 NA intron (NR_034095, intron 1 of 3) (CACA)n|Simple_repeat|Simple_repeat 18631 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 202.167-2 chr1 229937142 229937540 + 0.833333 NA Intergenic L1ME1|LINE|L1 -43433 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 215-21 chr21 29619592 29619954 + 0.833333 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 23733 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 200.5-20 chr2 14858542 14858793 + 0.833333 NA Intergenic L1MA3|LINE|L1 225950 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 122-19 chr14 54641328 54641600 + 0.833333 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 73852 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 127-55 chr2 200110402 200110614 + 0.833333 NA Intergenic Intergenic -155017 NR_109905 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 225.667-22 chr3 105490043 105490394 + 0.833333 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 123309 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 159.167-41 chr3 146766236 146766555 + 0.833333 NA Intergenic MIRc|SINE|MIR -155528 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 176.167-16 chr17 29758792 29759176 + 0.833333 NA intron (NM_033389, intron 2 of 14) AluJr|SINE|Alu 2448 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 156-40 chr19 28742036 28742372 + 0.833333 NA Intergenic LOR1-int|LTR|ERV1 -14510 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 244.167-5 chr12 23110588 23110964 + 0.833333 NA Intergenic Intergenic -64860 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 253.333-10 chr18 68224886 68225251 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR -410246 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 154.833-47 chr5 18066064 18066400 + 0.833333 NA Intergenic L1ME4b|LINE|L1 258958 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 160-4 chr1 169365964 169366308 + 0.833333 NA intron (NR_104229, intron 1 of 12) L2|LINE|L2 1661 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 165.333-19 chr14 69563299 69563596 + 0.833333 NA Intergenic MER3|DNA|hAT-Charlie 11424 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 126.5-92 chrX 20441972 20442217 + 0.833333 NA Intergenic L1ME3|LINE|L1 -175185 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 177.667-70 chr8 115132931 115133205 + 0.833333 NA Intergenic MamGypLTR3a|LTR|Gypsy 534945 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 134.333-69 chr2 225082049 225082224 + 0.833333 NA Intergenic Intergenic -39668 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 201-49 chr9 68860428 68860765 + 0.833333 NA intron (NM_003558, intron 4 of 15) intron (NM_003558, intron 4 of 15) 80531 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 168.5-55 chr5 115106026 115106328 + 0.833333 NA Intergenic MIRb|SINE|MIR 63731 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 230.5-9 chr2 108933623 108933910 + 0.833333 NA intron (NM_022336, intron 1 of 11) intron (NM_022336, intron 1 of 11) 55454 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 159-8 chr1 179383885 179384267 + 0.833333 NA intron (NR_073544, intron 8 of 25) intron (NR_073544, intron 8 of 25) 18032 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 136.333-85 chr6 133292750 133293101 + 0.833333 NA intron (NM_172103, intron 2 of 18) MIR3|SINE|MIR 51426 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 279.833-6 chr4 59863888 59864374 + 0.833333 NA Intergenic L1MA3|LINE|L1 850558 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 250-22 chr5 144096289 144096732 + 0.833333 NA Intergenic MER20B|DNA|hAT-Charlie 74149 NM_030799 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 128-3 chr1 101989465 101989699 + 0.833333 NA intron (NR_110210, intron 1 of 7) intron (NR_110210, intron 1 of 7) 7652 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 244.167-22 chr9 95249217 95249645 + 0.833333 NA intron (NM_001243744, intron 1 of 13) intron (NM_001243744, intron 1 of 13) 67823 NM_001243743 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 182.167-6 chr10 56546705 56546947 + 0.833333 NA Intergenic MIRc|SINE|MIR -185553 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 156.5-84 chr8 79728904 79729154 + 0.833333 NA Intergenic Intergenic 37446 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 197-55 chr9 29281051 29281453 + 0.833333 NA Intergenic Charlie26a|DNA|hAT-Charlie -67651 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 117.333-54 chr2 240972843 240973097 + 0.833333 NA intron (NM_001351305, intron 27 of 31) intron (NM_001351305, intron 27 of 31) -5519 NR_033841 200772 Hs.647893 NR_033841 ENSG00000233392 LOC200772 - uncharacterized LOC200772 ncRNA 118.667-18 chr10 73344416 73344585 + 0.833333 NA intron (NM_001367801, intron 6 of 27) MER81|DNA|hAT-Blackjack 14254 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 242.167-20 chr8 136899572 136900028 + 0.833333 NA Intergenic Intergenic 369002 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 211.5-33 chr8 59125327 59125750 + 0.833333 NA Intergenic Intergenic 6328 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 215.333-10 chr12 21888759 21889222 + 0.833333 NA intron (NM_005691, intron 12 of 37) intron (NM_005691, intron 12 of 37) 47704 NM_005691 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 156.167-19 chr13 94418652 94418944 + 0.833333 NA Intergenic Intergenic 60884 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 147.167 chr1 33907458 33907769 + 0.833333 NA intron (NM_052896, intron 5 of 69) intron (NM_052896, intron 5 of 69) 38657 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 143.667-58 chr2 108135183 108135669 + 0.833333 NA Intergenic L1MA2|LINE|L1 82415 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 183.667-49 chr3 89813224 89813547 + 0.833333 NA Intergenic L1PA14|LINE|L1 705764 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 127.5-67 chr7 136541674 136541996 + 0.833333 NA Intergenic L1MB8|LINE|L1 -326817 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 348 chr11 32739670 32740404 + 0.833333 NA intron (NM_001008391, intron 2 of 17) L1MA3|LINE|L1 54621 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 144.667-42 chr14 88058419 88058675 + 0.833333 NA intron (NR_046094, intron 2 of 3) L1MA3|LINE|L1 -32235 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 269-5 chr14 73440047 73440583 + 0.833333 NA intron (NM_001005743, intron 1 of 12) L1M4|LINE|L1 18265 NM_001005745 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 234.833-14 chr2 103940225 103940593 + 0.833333 NA Intergenic L1MA4|LINE|L1 467923 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 133-23 chr12 120923562 120923842 + 0.833333 NA Intergenic Intergenic 19007 NR_131215 105500240 Hs.742757 NR_131215 XLOC_009911 - uncharacterized LOC105500240 ncRNA 262.667-32 chr7 52021182 52021782 + 0.833333 NA Intergenic Intergenic -628226 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 138.167-14 chr12 12735755 12736112 + 0.833333 NA intron (NM_001130415, intron 1 of 1) AluJr4|SINE|Alu 10016 NM_001130415 81575 Hs.23388 NM_030817 ENSG00000178878 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 123.667-57 chr2 182253881 182254226 + 0.833333 NA intron (NM_005019, intron 2 of 14) intron (NM_005019, intron 2 of 14) -11990 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 163.333-36 chr19 32555796 32556055 + 0.833333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -25265 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 120.667-88 chr4 66213699 66213978 + 0.833333 NA Intergenic L1MEf|LINE|L1 -62986 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 252.5-17 chr3 40064582 40064962 + 0.833333 NA intron (NM_001284425, intron 3 of 15) intron (NM_001284425, intron 3 of 15) -35239 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 133.333-107 chr6 110824358 110824669 + 0.833333 NA intron (NM_001287215, intron 1 of 8) L1PB3|LINE|L1 -8658 NM_001300964 23097 Hs.744895 NM_015076 ENSG00000155111 CDK19 CDC2L6|CDK11|bA346C16.3 cyclin dependent kinase 19 protein-coding 156.667-59 chr2 232629117 232629362 + 0.833333 NA intron (NM_001243252, intron 1 of 3) intron (NM_001243252, intron 1 of 3) -4365 NM_025202 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 252.167-12 chr5 8599713 8600093 + 0.833333 NA Intergenic Intergenic 138978 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 131.833-44 chr22 30275941 30276261 + 0.833333 NA Intergenic Intergenic -9250 NM_020530 5008 Hs.248156 NM_020530 ENSG00000099985 OSM - oncostatin M protein-coding 156.833-13 chr11 111140058 111140554 + 0.833333 NA Intergenic L1M5|LINE|L1 -42988 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 169.333-56 chr4 73757874 73758189 + 0.833333 NA Intergenic L1MB3|LINE|L1 17462 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 272.333-6 chr12 70571992 70572338 + 0.833333 NA intron (NM_001330204, intron 10 of 32) intron (NM_001330204, intron 10 of 32) 37859 NM_002837 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 172.833-50 chr7 84206672 84206951 + 0.833333 NA Intergenic Intergenic -12022 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 246-18 chr5 98310333 98310689 + 0.833333 NA Intergenic Intergenic -149272 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 158-13 chr12 26423177 26423596 + 0.833333 NA intron (NM_002223, intron 49 of 56) intron (NM_002223, intron 49 of 56) 227813 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 208.333-12 chr12 5400497 5400792 + 0.833333 NA Intergenic Intergenic -31464 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 258.667-20 chr5 58940758 58941219 + 0.833333 NA Intergenic Intergenic 58910 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 148-27 chr14 51517038 51517341 + 0.833333 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 28061 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 157-20 chr12 65168965 65169294 + 0.833333 NA promoter-TSS (NM_001167614) promoter-TSS (NM_001167614) -454 NM_001167614 23592 Hs.744150 NM_014319 ENSG00000174106 LEMD3 MAN1 LEM domain containing 3 protein-coding 197.667-34 chr20 29265238 29265475 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 151605 NR_037925 647476 Hs.274541 NR_037925 FRG2EP - FSHD region gene 2 family member E, pseudogene pseudo 187.667-27 chr2 51990626 51990977 + 0.833333 NA intron (NR_135237, intron 7 of 10) LTR50|LTR|ERVL -379847 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 197.5-4 chr1 108633259 108633528 + 0.833333 NA intron (NM_001010883, intron 10 of 10) AluJo|SINE|Alu 27700 NM_001102592 113802 Hs.7962 NM_144584 ENSG00000162639 HENMT1 C1orf59|HEN1 HEN methyltransferase 1 protein-coding 143-4 chr1 107675524 107675763 + 0.833333 NA intron (NM_006113, intron 19 of 26) intron (NM_006113, intron 19 of 26) 12856 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 210.833-28 chr7 11313454 11313942 + 0.833333 NA Intergenic MER44C|DNA|TcMar-Tigger 339826 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 224.5-15 chr20 42319296 42319782 + 0.833333 NA intron (NM_133170, intron 11 of 31) intron (NM_133170, intron 11 of 31) -365944 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 173.333-16 chr12 87255629 87255966 + 0.833333 NA Intergenic Intergenic -74942 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 262.667-36 chr8 122289024 122289482 + 0.833333 NA Intergenic Intergenic 279391 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 127.833-43 chr2 181600405 181600871 + 0.833333 NA intron (NR_027690, intron 2 of 11) L1PA17|LINE|L1 56467 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 229.5-23 chr7 9920880 9921264 + 0.833333 NA Intergenic Intergenic 286802 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 163-54 chr6 130427246 130427626 + 0.833333 NA intron (NM_001258278, intron 1 of 1) L1ME4a|LINE|L1 6340 NM_001258278 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 354.5-7 chr7 144103244 144103934 + 0.833333 NA Intergenic Intergenic -5994 NM_001005480 442361 Hs.553841 NM_001005480 ENSG00000221989 OR2A2 OR2A17P|OR2A2P|OR7-11|OST008 olfactory receptor family 2 subfamily A member 2 protein-coding 173.167-46 chr8 5432859 5433175 + 0.833333 NA Intergenic L1M4|LINE|L1 -438103 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 124.167-62 chr4 73710399 73710596 + 0.833333 NA Intergenic MIR|SINE|MIR -30072 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 178.833-22 chr2 185079759 185080215 + 0.833333 NA Intergenic MER8|DNA|TcMar-Tigger 87085 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 193.167-5 chr10 55691976 55692232 + 0.833333 NA Intergenic L1MA6|LINE|L1 -64162 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 134.333-77 chr3 102596736 102596977 + 0.833333 NA Intergenic Intergenic 161841 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 129.167-87 chr8 130346482 130346835 + 0.833333 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) -50125 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 211.167-4 chr10 28561461 28561719 + 0.833333 NA intron (NM_100486, intron 3 of 12) intron (NM_100486, intron 3 of 12) 28472 NM_100486 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 192.167-29 chr3 97632818 97633266 + 0.833333 NA intron (NM_001080448, intron 13 of 17) intron (NM_001080448, intron 13 of 17) -131479 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 114-71 chr4 5997779 5997943 + 0.833333 NA intron (NM_001364690, intron 2 of 10) L1ME4a|LINE|L1 20685 NM_001364690 389197 Hs.479065 NM_207405 ENSG00000181215 C4orf50 - chromosome 4 open reading frame 50 protein-coding 146.667-89 chr8 36143089 36143300 + 0.833333 NA Intergenic LTR33A_|LTR|ERVL -432874 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 139.5-13 chr11 101107456 101107655 + 0.833333 NA intron (NM_000926, intron 2 of 7) intron (NM_000926, intron 2 of 7) 21508 NM_001202474 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 178.833-27 chr4 44334319 44334926 + 0.833333 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 114187 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 199.667-8 chr11 11756283 11756584 + 0.833333 NA Intergenic Intergenic 26789 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 208-19 chr20 8862440 8862711 + 0.833333 NA intron (NM_182734, intron 32 of 32) intron (NM_182734, intron 32 of 32) 31390 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 234.167-20 chr9 37809348 37809670 + 0.833333 NA intron (NM_024345, intron 1 of 6) L1MEd|LINE|L1 8712 NM_024345 79269 Hs.118394 NM_024345 ENSG00000122741 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 181.5-14 chr12 58872740 58873068 + 0.833333 NA intron (NM_153377, intron 18 of 18) intron (NM_153377, intron 18 of 18) 46642 NM_001136051 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 233.833-12 chr5 53487547 53488005 + 0.833333 NA TTS (NM_006350) TTS (NM_006350) 7147 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 195.167-26 chr4 80317916 80318306 + 0.833333 NA Intergenic L1MB8|LINE|L1 -17609 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 125.833-62 chr4 42026944 42027293 + 0.833333 NA intron (NM_006345, intron 6 of 17) Cheshire|DNA|hAT-Charlie 36588 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 114.667-43 chr2 11721371 11721516 + 0.833333 NA intron (NM_001261428, intron 2 of 21) MIRc|SINE|MIR -2872 NM_001261427 23175 Hs.467740 NM_145693 ENSG00000134324 LPIN1 PAP1 lipin 1 protein-coding 184.833-4 chr11 133015976 133016371 + 0.833333 NA intron (NM_001012393, intron 1 of 7) MLT1E2|LTR|ERVL-MaLR -72405 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 209.667-23 chr2 102600356 102600739 + 0.833333 NA Intergenic L2a|LINE|L2 -19006 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 218.333-31 chr7 12350362 12350814 + 0.833333 NA intron (NM_001135924, intron 19 of 28) L1M4|LINE|L1 53277 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 137.833-44 chr6 27091205 27091502 + 0.833333 NA Intergenic Intergenic 41443 NM_021058 8970 Hs.591807 NM_021058 ENSG00000124635 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1 H2B family member j protein-coding 187.833-31 chr8 108684690 108685034 + 0.833333 NA intron (NR_136411, intron 1 of 3) L1MA5A|LINE|L1 102732 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 225.167-6 chr12 12117646 12118156 + 0.833333 NA 3' UTR (NM_002336, exon 23 of 23).2 3' UTR (NM_002336, exon 23 of 23).2 5949 NR_036262 100422885 NR_036262 ENSG00000283498 MIR1244-2 - microRNA 1244-2 ncRNA 138.167-59 chr5 22870964 22871178 + 0.833333 NA Intergenic Intergenic -17727 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 137-8 chr10 37405707 37405881 + 0.833333 NA Intergenic Intergenic 96608 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 132.667-91 chr8 65197377 65197634 + 0.833333 NA Intergenic Intergenic -17165 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 218-8 chr11 59412703 59413267 + 0.833333 NA Intergenic Intergenic 9968 NM_001001954 219981 Hs.553648 NM_001001954 ENSG00000172324 OR5A2 - olfactory receptor family 5 subfamily A member 2 protein-coding 123.667-73 chr3 184888691 184888866 + 0.833333 NA intron (NM_001009921, intron 21 of 46) intron (NM_001009921, intron 21 of 46) 76271 NR_146116 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 126.167-20 chr11 102464195 102464603 + 0.833333 NA Intergenic MER1B|DNA|hAT-Charlie -2856 NR_135076 102723838 Hs.738066 NR_135076 ENSG00000255482 LOC102723838 - uncharacterized LOC102723838 ncRNA 129-45 chr2 172417216 172417459 + 0.833333 NA Intergenic Intergenic -9999 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 270.667-23 chr8 100391942 100392388 + 0.833333 NA Intergenic Intergenic 9402 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 219-16 chr2 204480699 204481448 + 0.833333 NA Intergenic L2a|LINE|L2 -64402 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 279.667-11 chr2 52170852 52171214 + 0.833333 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -199615 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 123.667-75 chr4 23918441 23918720 + 0.833333 NA intron (NM_001330752, intron 2 of 13) intron (NM_001330752, intron 2 of 13) -28533 NM_013261 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 141.5-52 chr2 232173949 232174148 + 0.833333 NA intron (NR_046477, intron 8 of 18) L1MB7|LINE|L1 1395 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 165.5-3 chr1 192443239 192443700 + 0.833333 NA Intergenic Intergenic 126477 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 183.833-8 chr12 40786447 40786797 + 0.833333 NA intron (NM_001256063, intron 1 of 15) L1MEd|LINE|L1 -41316 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 220.167-16 chr2 15475620 15476066 + 0.833333 NA exon (NM_015909, exon 14 of 52) exon (NM_015909, exon 14 of 52) 85491 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 123.333-90 chr6 7582265 7582515 + 0.833333 NA intron (NM_004415, intron 23 of 23) intron (NM_004415, intron 23 of 23) -7808 NM_152551 154007 Hs.13366 NM_152551 ENSG00000168566 SNRNP48 C6orf151|dJ336K20B.1|dJ512B11.2 small nuclear ribonucleoprotein U11/U12 subunit 48 protein-coding 166.167-21 chr16 81157997 81158372 + 0.833333 NA intron (NM_052892, intron 23 of 43) intron (NM_052892, intron 23 of 43) 23147 NM_001278425 114780 Hs.413525 NM_052892 ENSG00000166473 PKD1L2 PC1L2 polycystin 1 like 2 (gene/pseudogene) protein-coding 139-40 chr3 80381319 80381555 + 0.833333 NA Intergenic Intergenic -383460 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 167.667-85 chr8 24945780 24946149 + 0.833333 NA Intergenic Intergenic 7903 NR_106900 102465506 NR_106900 ENSG00000283327 MIR6841 hsa-mir-6841 microRNA 6841 ncRNA 186-27 chr22 31815886 31816134 + 0.833333 NA TTS (NM_001007188) TTS (NM_001007188) 61987 NM_001369903 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 135.167-80 chr6 42332132 42332370 + 0.833333 NA intron (NM_001297573, intron 3 of 17) intron (NM_001297573, intron 3 of 17) -114390 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 198.167-31 chr5 82790366 82790812 + 0.833333 NA Intergenic Intergenic -49566 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 135.167-40 chr17 54606422 54606621 + 0.833333 NA Intergenic L2c|LINE|L2 -294170 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 152.5-69 chr8 99894525 99894856 + 0.833333 NA promoter-TSS (NM_004374) promoter-TSS (NM_004374) -983 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 197.167-31 chr20 59878475 59878856 + 0.833333 NA intron (NM_014258, intron 31 of 44) L1ME3F|LINE|L1 54972 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 190.833-34 chr4 107790843 107791274 + 0.833333 NA Intergenic Intergenic -33507 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 246.167-23 chr5 84820443 84820875 + 0.833333 NA Intergenic Intergenic -435779 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 114.667-101 chr5 93413605 93413760 + 0.833333 NA intron (NR_109822, intron 2 of 2) intron (NR_109822, intron 2 of 2) 157661 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 145.5-47 chr3 95652171 95652577 + 0.833333 NA Intergenic Intergenic 30819 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 205-17 chr2 9300823 9301221 + 0.833333 NA intron (NM_003887, intron 3 of 27) intron (NM_003887, intron 3 of 27) 94210 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 195.667-18 chr17 64567291 64567587 + 0.833333 NA intron (NM_022739, intron 10 of 18) intron (NM_022739, intron 10 of 18) 60462 NM_001316990 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 127.333-65 chr20 57186988 57187162 + 0.833333 NA intron (NM_001719, intron 3 of 6) intron (NM_001719, intron 3 of 6) -26621 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 147.667-3 chr1 64409621 64409955 + 0.833333 NA Intergenic L1ME2|LINE|L1 -60341 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 235.833-3 chr1 98326025 98326495 + 0.833333 NA Intergenic AluJr4|SINE|Alu 115549 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 212.833-23 chr7 68176140 68176668 + 0.833333 NA Intergenic AluJr|SINE|Alu 156151 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 125.833-77 chr6 144227776 144228118 + 0.833333 NA Intergenic Intergenic -63790 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 171-57 chr7 40056145 40056600 + 0.833333 NA intron (NM_003718, intron 7 of 13) intron (NM_003718, intron 7 of 13) 78250 NM_138701 136647 Hs.654989 NM_138701 ENSG00000168303 MPLKIP ABHS|C7orf11|ORF20|TTD4 M-phase specific PLK1 interacting protein protein-coding 142-25 chr12 27361378 27361740 + 0.833333 NA intron (NM_001248003, intron 1 of 14) intron (NM_001248003, intron 1 of 14) 28723 NM_001248005 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 113.667-37 chr13 30337625 30337786 + 0.833333 NA Intergenic MER5B|DNA|hAT-Charlie -30154 NM_032116 84056 Hs.243596 NM_032116 ENSG00000102781 KATNAL1 - katanin catalytic subunit A1 like 1 protein-coding 180.5-7 chr1 205100315 205100639 + 0.833333 NA intron (NM_001193273, intron 6 of 13) intron (NM_001193273, intron 6 of 13) -16017 NM_203376 388730 Hs.146928 NM_203376 ENSG00000174529 TMEM81 HC3107|KVLA2788|UNQ2788 transmembrane protein 81 protein-coding 252.5-8 chr14 67336482 67336941 + 0.833333 NA TTS (NM_022474) TTS (NM_022474) 23093 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 145.833-10 chr1 237226775 237227221 + 0.833333 NA intron (NM_001035, intron 1 of 104) AluSz|SINE|Alu 184814 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 340.833-2 chr15 37905130 37905608 + 0.833333 NA Intergenic Kanga11a|DNA|TcMar-Tc2 -29238 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 188.334-12 chr9 33210832 33211408 + 0.833333 NA Intergenic MER20B|DNA|hAT-Charlie -29047 NM_014471 27290 Hs.555934 NM_014471 ENSG00000122711 SPINK4 HEL136|PEC-60|PEC60 serine peptidase inhibitor, Kazal type 4 protein-coding 330.667-7 chr17 31115933 31116569 + 0.833333 NA intron (NM_001042492, intron 1 of 57) Helitron2Na_Mam|RC?|Helitron? 21274 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 222.5-18 chr3 45901488 45901783 + 0.833333 NA exon (NM_001256369, exon 4 of 4) exon (NM_001256369, exon 4 of 4) 14089 NM_001276378 54585 Hs.30824 NM_020347 ENSG00000163818 LZTFL1 BBS17 leucine zipper transcription factor like 1 protein-coding 212.833-18 chr4 94903972 94904428 + 0.833333 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -92032 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 191-12 chr14 49240716 49241183 + 0.833333 NA Intergenic L1PA16|LINE|L1 345431 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 187.333-77 chr7 68403137 68403566 + 0.833333 NA Intergenic MLT1A1|LTR|ERVL-MaLR 383098 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 202-32 chr5 34423375 34423770 + 0.833333 NA Intergenic MER4-int|LTR|ERV1 -178848 NR_146599 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 138.667-30 chr14 64097027 64097279 + 0.833333 NA intron (NM_015180, intron 61 of 114) intron (NM_015180, intron 61 of 114) -2028 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 261.833-9 chr2 16475909 16476272 + 0.833333 NA Intergenic Intergenic 189744 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 146.333-48 chr2 37788335 37788634 + 0.833333 NA Intergenic HAL1|LINE|L1 41227 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 213.333-8 chr11 13993214 13993580 + 0.833333 NA intron (NM_006108, intron 2 of 15) intron (NM_006108, intron 2 of 15) 30674 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 221.167-4 chr10 22447192 22447659 + 0.833333 NA Intergenic Intergenic -9496 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 128.833-84 chr8 91125071 91125354 + 0.833333 NA intron (NM_001129890, intron 2 of 7) intron (NM_001129890, intron 2 of 7) 22593 NM_001129890 100130742 Hs.733070 NM_001129890 ENSG00000214954 LRRC69 - leucine rich repeat containing 69 protein-coding 152-54 chr8 134956746 134957212 + 0.833333 NA Intergenic Intergenic 107044 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 167.667-30 chr15 38658726 38659024 + 0.833333 NA Intergenic Intergenic -37723 NR_160786 257-6 chr11 77435199 77435648 + 0.833333 NA intron (NM_001128620, intron 1 of 15) MIRc|SINE|MIR 38640 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 121.167-47 chr20 38066329 38066600 + 0.833333 NA intron (NM_021215, intron 6 of 6) intron (NM_021215, intron 6 of 6) 32718 NM_021215 58490 Hs.278839 NM_021215 ENSG00000101413 RPRD1B C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 116.167-41 chr20 24320265 24320563 + 0.833333 NA Intergenic MLT1H|LTR|ERVL-MaLR 120647 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 229-39 chr6 153294748 153295135 + 0.833333 NA Intergenic Intergenic -163659 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 114-90 chr7 33582827 33583092 + 0.833333 NA intron (NR_145411, intron 22 of 23) intron (NR_145411, intron 22 of 23) -321956 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 118.833-72 chr8 129176871 129177033 + 0.833333 NA Intergenic Intergenic 64288 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 151.333-73 chr5 87277480 87277801 + 0.833333 NA intron (NM_022650, intron 1 of 24) MLT1B|LTR|ERVL-MaLR 8716 NM_022650 5921 Hs.664080 NM_002890 ENSG00000145715 RASA1 CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP RAS p21 protein activator 1 protein-coding 180.167-32 chr3 36706026 36706490 + 0.833333 NA Intergenic Intergenic 33603 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 240.5-9 chr22 26243712 26244170 + 0.833333 NA intron (NM_001184776, intron 1 of 14) AluJb|SINE|Alu 74467 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 156-74 chr5 163564757 163565144 + 0.833333 NA Intergenic Intergenic 59331 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 195.333-2 chr1 188136967 188137478 + 0.833333 NA Intergenic Intergenic 693594 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 189-30 chr3 141751236 141751612 + 0.833333 NA Intergenic Intergenic 13126 NM_014245 9616 Hs.134623 NM_014245 ENSG00000114125 RNF7 CKBBP1|ROC2|SAG|rbx2 ring finger protein 7 protein-coding 328-12 chr7 28717629 28718384 + 0.833333 NA intron (NM_001011666, intron 1 of 6) intron (NM_001011666, intron 1 of 6) 31873 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 174.167-24 chr3 57617944 57618323 + 0.833333 NA intron (NM_001322176, intron 2 of 2) L1PA17|LINE|L1 20344 NR_132370 106144532 Hs.667207 NR_132369 ENSG00000272146 ARF4-AS1 - ARF4 antisense RNA 1 ncRNA 197.667-48 chr6 62344951 62345272 + 0.833333 NA Intergenic L1PA12|LINE|L1 -58884 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 210.667-44 chr5 39625897 39626289 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR 105662 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 140.5-20 chr12 95591555 95591777 + 0.833333 NA Intergenic ERVL-B4-int|LTR|ERVL -40190 NM_032147 84101 Hs.646421 NM_032147 ENSG00000136014 USP44 - ubiquitin specific peptidase 44 protein-coding 179.167-40 chr5 131378798 131379041 + 0.833333 NA intron (NM_001038702, intron 2 of 4) MER119|DNA|hAT-Charlie 114910 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 116.667-38 chr15 62121742 62121962 + 0.833333 NA Intergenic MamTip3|DNA|hAT-Tip100 43433 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 206.5-17 chr2 155987154 155987635 + 0.833333 NA Intergenic Intergenic 267537 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 138.167-22 chr15 26337173 26337383 + 0.833333 NA Intergenic L1MC5|LINE|L1 221465 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 250.5-20 chr5 110590886 110591523 + 0.833333 NA intron (NM_001039763, intron 10 of 13) AluSz6|SINE|Alu -77289 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 256.334 chr14 37564096 37564676 + 0.833333 NA Intergenic (ATGT)n|Simple_repeat|Simple_repeat 30863 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 228.333-12 chr17 60848914 60849373 + 0.833333 NA intron (NM_001330413, intron 7 of 25) MLT2C1|LTR|ERVL 171292 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 154.5-61 chr5 168805444 168805650 + 0.833333 NA intron (NM_003062, intron 9 of 35) intron (NM_003062, intron 9 of 35) -37292 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 172.833-22 chr15 87623908 87624291 + 0.833333 NA Intergenic L1PBa|LINE|L1 47170 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 143.167-22 chr15 91014425 91014754 + 0.833333 NA intron (NM_001289149, intron 2 of 21) intron (NM_001289149, intron 2 of 21) 8032 NM_001289148 26276 Hs.745007 NM_018668 ENSG00000184056 VPS33B - VPS33B late endosome and lysosome associated protein-coding 153.5-48 chr4 68091366 68091580 + 0.833333 NA intron (NM_207407, intron 2 of 9) L2|LINE|L2 -28176 NR_027094 401135 Hs.130270 NM_001014372 SYT14P1 CHR415SYT|SYT14L|SYTDEP synaptotagmin 14 pseudogene 1 pseudo 148.333-50 chr2 189455283 189455552 + 0.833333 NA exon (NM_032168, exon 5 of 21) exon (NM_032168, exon 5 of 21) 13943 NM_032168 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 222-27 chr3 114359396 114359959 + 0.833333 NA intron (NR_038993, intron 4 of 8) intron (NR_038993, intron 4 of 8) 7866 NR_038993 100131117 Hs.122417 NR_038993 ENSG00000241560 ZBTB20-AS1 - ZBTB20 antisense RNA 1 ncRNA 113.333-24 chr11 57774455 57774682 + 0.833333 NA intron (NM_001085467, intron 1 of 16) intron (NM_001085467, intron 1 of 16) 12766 NM_001206884 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 246.833-12 chr8 65098931 65099515 + 0.833333 NA Intergenic Intergenic 81117 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 237.833-21 chr8 110000829 110001363 + 0.833333 NA Intergenic L1MA4A|LINE|L1 -25325 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 184.333-62 chr8 33883130 33883591 + 0.833333 NA Intergenic L1MC1|LINE|L1 -283254 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 126.167-60 chr3 181976480 181976760 + 0.833333 NA intron (NR_104146, intron 5 of 7) L2a|LINE|L2 24256 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 145.5-28 chr17 52723710 52723955 + 0.833333 NA Intergenic LTR89|LTR|ERVL? -138289 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 136.167-80 chr9 91131070 91131260 + 0.833333 NA intron (NR_135306, intron 2 of 2) L1MD3|LINE|L1 12103 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 202.167-16 chr19 40750692 40751044 + 0.833333 NA promoter-TSS (NM_001353809) promoter-TSS (NM_001353809) -315 NR_148550 284325 Hs.585105 NM_198476 ENSG00000188493 C19orf54 - chromosome 19 open reading frame 54 protein-coding 280.167-11 chr6 38706660 38707089 + 0.833333 NA Intergenic AluSx|SINE|Alu -3729 NM_006708 2739 Hs.268849 NM_006708 ENSG00000124767 GLO1 GLOD1|GLYI|HEL-S-74 glyoxalase I protein-coding 161-80 chr9 1132871 1133131 + 0.833333 NA Intergenic L1MA7|LINE|L1 81514 NM_001370532 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 206.167-7 chr2 14460104 14460578 + 0.833333 NA Intergenic Intergenic -59383 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 256-8 chr20 7408636 7409223 + 0.833333 NA Intergenic Intergenic 37321 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 212-35 chr7 87840072 87840766 + 0.833333 NA intron (NM_018843, intron 10 of 11) MER5A|DNA|hAT-Charlie 35941 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 271.167-9 chr17 65835989 65836353 + 0.833333 NA intron (NM_001353129, intron 21 of 26) L1MA4|LINE|L1 -9628 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 204-3 chr12 34559368 34559648 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 537012 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 161.833-9 chr13 77293331 77293678 + 0.833333 NA intron (NM_015057, intron 2 of 82) MLT1D|LTR|ERVL-MaLR 33590 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|PHR1|Phr MYC binding protein 2 protein-coding 173.667-26 chr2 4762496 4762725 + 0.833333 NA Intergenic Intergenic -106388 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 174.333-24 chr17 70038475 70038727 + 0.833333 NA Intergenic L1MB8|LINE|L1 -12670 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 203.833-15 chr2 223471324 223471770 + 0.833333 NA Intergenic MER66-int|LTR|ERV1 130814 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 217.167-15 chr6 48066234 48066570 + 0.833333 NA intron (NM_207499, intron 1 of 2) intron (NM_207499, intron 1 of 2) 2287 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 238.667-2 chr1 244702558 244703002 + 0.833333 NA intron (NM_016076, intron 4 of 4) MLT1L|LTR|ERVL-MaLR 49654 NM_016076 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 145.833-14 chr11 34630047 34630329 + 0.833333 NA intron (NM_012153, intron 1 of 8) intron (NM_012153, intron 1 of 8) -2378 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 133.667-82 chr6 130066308 130066551 + 0.833333 NA exon (NM_032438, exon 11 of 23) exon (NM_032438, exon 11 of 23) 46785 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 124.833-78 chr6 8955664 8955877 + 0.833333 NA Intergenic Intergenic 303561 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 120.333-42 chr14 53102973 53103261 + 0.833333 NA intron (NM_001160147, intron 2 of 12) intron (NM_001160147, intron 2 of 12) 50206 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 136.5-3 chr1 71198221 71198595 + 0.833333 NA intron (NR_046217, intron 2 of 3) MamSINE1|SINE|tRNA-RTE 117084 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 187.167-2 chr1 195607019 195607381 + 0.833333 NA Intergenic Intergenic 481515 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 217.833-3 chr10 94301825 94302236 + 0.833333 NA intron (NM_001165979, intron 23 of 31) intron (NM_001165979, intron 23 of 31) -14960 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 173.333-39 chr22 25901647 25902111 + 0.833333 NA intron (NM_001318245, intron 29 of 43) AluJr|SINE|Alu 159691 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 153.833-44 chr3 180137643 180137861 + 0.833333 NA Intergenic Intergenic -100815 NM_001349399 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 289.167-13 chr21 20851115 20851611 + 0.833333 NA Intergenic Intergenic -48255 NR_109788 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 176.667-40 chr2 184579982 184580262 + 0.833333 NA Intergenic Intergenic -18407 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 224.333-31 chr7 41315290 41315669 + 0.833333 NA Intergenic MIRb|SINE|MIR 213875 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 136.333-87 chr7 2060605 2060884 + 0.833333 NA intron (NM_001013837, intron 12 of 18) intron (NM_001013837, intron 12 of 18) 28308 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 204.333-43 chr5 101237877 101238328 + 0.833333 NA Intergenic L1PA8|LINE|L1 -334820 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 270.5-5 chr13 25069510 25069905 + 0.833333 NA Intergenic Intergenic -26431 NM_030979 5042 Hs.458280 NM_030979 ENSG00000151846 PABPC3 PABP3|PABPL3|tPABP poly(A) binding protein cytoplasmic 3 protein-coding 127-89 chr6 131801126 131801348 + 0.833333 NA Intergenic L1ME1|LINE|L1 -6783 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 167.333-25 chr15 75340951 75341261 + 0.833333 NA TTS (NM_017828) TTS (NM_017828) 5043 NM_001321847 54939 Hs.351327 NM_017828 ENSG00000140365 COMMD4 - COMM domain containing 4 protein-coding 186-9 chr10 112179983 112180278 + 0.833333 NA intron (NM_001244949, intron 4 of 21) intron (NM_001244949, intron 4 of 21) 3635 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 215.833-19 chr6 63595594 63595910 + 0.833333 NA Intergenic L1MB8|LINE|L1 23740 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 217.167-4 chr11 78443680 78444073 + 0.833333 NA intron (NM_024678, intron 11 of 13) intron (NM_024678, intron 11 of 13) -14040 NR_120564 101928865 Hs.407574 NR_120564 ENSG00000251323 LINC02728 - long intergenic non-protein coding RNA 2728 ncRNA 180-15 chr17 21141864 21142152 + 0.833333 NA intron (NM_015510, intron 1 of 6) MER4A1|LTR|ERV1 15080 NM_015510 25979 Hs.386989 NM_015510 ENSG00000109016 DHRS7B CGI-93|SDR32C1 dehydrogenase/reductase 7B protein-coding 122.833-76 chr6 145085995 145086167 + 0.833333 NA Intergenic HAL1|LINE|L1 600796 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 238.834-3 chr2 216217990 216218649 + 0.833333 NA non-coding (NR_037701, exon 1 of 1) non-coding (NR_037701, exon 1 of 1) 1430 NR_037701 150967 Hs.56876 NM_001199924 ENSG00000260804 LINC01963 PKI55 long intergenic non-protein coding RNA 1963 ncRNA 148.333-45 chr2 100598988 100599185 + 0.833333 NA Intergenic Intergenic -4653 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 245.667-24 chr3 33693211 33693628 + 0.833333 NA intron (NM_001365634, intron 2 of 35) L2|LINE|L2 24835 NM_015097 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 202.333-16 chr15 59964538 59965102 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR -39491 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 152-28 chr19 38492410 38492645 + 0.833333 NA exon (NM_000540, exon 38 of 106) exon (NM_000540, exon 38 of 106) 58827 NM_000540 6261 Hs.466664 NM_000540 ENSG00000196218 RYR1 CCO|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR ryanodine receptor 1 protein-coding 144.5-15 chr11 97347746 97348066 + 0.833333 NA Intergenic L1MA5A|LINE|L1 839481 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 127.5-70 chr8 129108821 129109084 + 0.833333 NA Intergenic Intergenic 132288 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 152.667-47 chr2 125560473 125560775 + 0.833333 NA Intergenic Intergenic 557361 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 184.667-29 chr21 18194309 18194603 + 0.833333 NA intron (NM_001204178, intron 2 of 5) L2a|LINE|L2 -50377 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 129.667-65 chr21 26775480 26775830 + 0.833333 NA Intergenic HAL1M8|LINE|L1 69754 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 145.5-23 chr14 72418504 72418824 + 0.833333 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -98156 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 254-13 chr20 37024121 37024559 + 0.833333 NA intron (NM_002895, intron 16 of 21) intron (NM_002895, intron 16 of 21) 71657 NM_183404 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 150.5-3 chr1 174219967 174220282 + 0.833333 NA intron (NM_001366446, intron 2 of 25) intron (NM_001366446, intron 2 of 25) -54976 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 245.333-6 chr14 40523126 40523527 + 0.833333 NA Intergenic LTR62|LTR|ERVL -431385 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 190.833-38 chr7 18608091 18608547 + 0.833333 NA intron (NM_001321893, intron 7 of 11) intron (NM_001321893, intron 7 of 11) 99049 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 170.5-30 chr2 34878304 34878587 + 0.833333 NA Intergenic L1MB7|LINE|L1 200888 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 158.167-52 chr8 135199738 135200035 + 0.833333 NA Intergenic MLT1O|LTR|ERVL-MaLR -34245 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 136-34 chr19 51360397 51360708 + 0.833333 NA intron (NM_001985, intron 1 of 5) MIR|SINE|MIR -5710 NM_001014763 2109 Hs.348531 NM_001985 ENSG00000105379 ETFB FP585|MADD electron transfer flavoprotein subunit beta protein-coding 188.667-17 chr13 112139538 112139856 + 0.833333 NA Intergenic Intergenic 21013 NR_134944 100506016 Hs.371110 NR_134944 LOC100506016 - uncharacterized LOC100506016 ncRNA 315.667-10 chr2 168506461 168506905 + 0.833333 NA intron (NM_001256126, intron 1 of 10) intron (NM_001256126, intron 1 of 10) 50411 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 196.833-7 chr10 42540220 42540509 + 0.833333 NA intron (NR_026777, intron 5 of 7) L1MA3|LINE|L1 12506 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 142.667-42 chr2 13073302 13073492 + 0.833333 NA Intergenic THE1C-int|LTR|ERVL-MaLR -66384 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 155.5-14 chr14 65101435 65101636 + 0.833333 NA intron (NR_073137, intron 1 of 3) intron (NR_073137, intron 1 of 3) 982 NM_145112 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 165.5-7 chr11 7585966 7586320 + 0.833333 NA intron (NM_001351860, intron 1 of 21) intron (NM_001351860, intron 1 of 21) 8252 NM_001351860 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 166-12 chr10 75503490 75503727 + 0.833333 NA intron (NM_001305581, intron 2 of 6) Eulor5B|DNA?|DNA? -48850 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 213.5-34 chr6 121467132 121467617 + 0.833333 NA Intergenic Intergenic 31728 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 172.5-26 chr17 10579474 10579968 + 0.833333 NA intron (NR_125367, intron 3 of 10) intron (NR_125367, intron 3 of 10) -30063 NM_017534 4620 Hs.667534 NM_017534 ENSG00000125414 MYH2 IBM3|MYH2A|MYHSA2|MYHas8|MYPOP|MyHC-2A|MyHC-IIa myosin heavy chain 2 protein-coding 221.333 chr10 80848872 80849205 + 0.833333 NA Intergenic L1MA4|LINE|L1 199241 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 174.5-42 chr6 149052035 149052504 + 0.833333 NA intron (NM_005715, intron 7 of 7) intron (NM_005715, intron 7 of 7) -19608 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 136-93 chrX 56201095 56201546 + 0.833333 NA intron (NM_001324104, intron 2 of 6) L1MA10|LINE|L1 -31036 NM_001324102 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 228.667-12 chr14 31580779 31581100 + 0.833333 NA intron (NM_001201573, intron 1 of 8) L2a|LINE|L2 3023 NM_001201573 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 144-74 chr8 79513760 79514047 + 0.833333 NA Intergenic Intergenic -97214 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 201.333-15 chr15 55233511 55233838 + 0.833333 NA intron (NM_183235, intron 3 of 6) L1MB7|LINE|L1 36612 NM_183234 5873 Hs.654978 NM_004580 ENSG00000069974 RAB27A GS2|HsT18676|RAB27|RAM RAB27A, member RAS oncogene family protein-coding 293-6 chr6 162557693 162558044 + 0.833333 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -169264 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 163.167-20 chr17 56526033 56526250 + 0.833333 NA Intergenic L3|LINE|CR1 -67558 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 205.667-59 chr8 88874380 88874801 + 0.833333 NA Intergenic Intergenic -547107 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 173.333-69 chr8 88938034 88938424 + 0.833333 NA Intergenic Intergenic -610746 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 274-2 chr1 152923788 152924392 + 0.833333 NA Intergenic LTR16E2|LTR|ERVL 15545 NM_005547 3713 Hs.516439 NM_005547 ENSG00000163207 IVL - involucrin protein-coding 268.333-4 chr15 37698145 37698680 + 0.833333 NA Intergenic L1MC5|LINE|L1 -236195 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 123.833-43 chr4 90506736 90507058 + 0.833333 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 271866 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 123-22 chr14 73956582 73956791 + 0.833333 NA intron (NM_182476, intron 4 of 11) L1M4|LINE|L1 6384 NM_182476 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 202.333-12 chr14 73854411 73854927 + 0.833333 NA intron (NM_001371328, intron 1 of 8) intron (NM_001371328, intron 1 of 8) 2722 NR_163921 216.167-7 chr14 55034159 55034535 + 0.833333 NA intron (NM_199421, intron 2 of 2) Charlie7|DNA|hAT-Charlie 7111 NM_199421 122809 Hs.744302 NM_080867 ENSG00000180008 SOCS4 SOCS7 suppressor of cytokine signaling 4 protein-coding 125.167-44 chr2 178865603 178865825 + 0.833333 NA intron (NM_173648, intron 17 of 23) intron (NM_173648, intron 17 of 23) -58291 NM_133378 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 170.667-36 chr2 225938094 225938512 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR -204491 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 182.5-37 chr6 67340097 67340471 + 0.833333 NA Intergenic MLT2B1|LTR|ERVL -715067 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 219.167-5 chr1 223073471 223073817 + 0.833333 NA Intergenic Intergenic 69604 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 197-40 chr5 167533168 167533515 + 0.833333 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -40318 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 142.333-35 chr15 88237190 88237390 + 0.833333 NA intron (NM_001007156, intron 3 of 15) L1ME2z|LINE|L1 -15440 NR_038229 283738 Hs.578429 NR_038229 ENSG00000260305 NTRK3-AS1 - NTRK3 antisense RNA 1 ncRNA 161.333-60 chr5 62275441 62275797 + 0.833333 NA Intergenic Intergenic -30543 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 165.333-36 chr22 29957616 29957916 + 0.833333 NA intron (NM_153051, intron 2 of 18) intron (NM_153051, intron 2 of 18) -49283 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 187.333-75 chr7 23991778 23992022 + 0.833333 NA Intergenic MIR|SINE|MIR 281681 NM_001260505 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 444-2 chr8 136709162 136710047 + 0.833333 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 178806 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 151.667-59 chr4 5377090 5377442 + 0.833333 NA intron (NM_001306082, intron 5 of 12) intron (NM_001306082, intron 5 of 12) -147303 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 144.833-30 chr2 12282965 12283216 + 0.833333 NA intron (NR_110196, intron 3 of 5) L1MB5|LINE|L1 83960 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 220.167-4 chr10 110197538 110197924 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -9874 NM_130439 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 217.833-15 chr22 27906383 27906862 + 0.833333 NA intron (NM_001284278, intron 3 of 11) MIR|SINE|MIR 12592 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 165.667-78 chr9 84892630 84892975 + 0.833333 NA intron (NM_001018064, intron 13 of 17) AluSq|SINE|Alu 186901 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 123.667-71 chr3 101734863 101735106 + 0.833333 NA intron (NM_024548, intron 6 of 10) MIRb|SINE|MIR 10370 NM_001303401 79598 Hs.444135 NM_024548 ENSG00000182504 CEP97 2810403B08Rik|LRRIQ2 centrosomal protein 97 protein-coding 174.333-70 chr8 112235488 112235746 + 0.833333 NA intron (NM_001363185, intron 63 of 66) intron (NM_001363185, intron 63 of 66) -407876 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 160.667-55 chr3 104852100 104852472 + 0.833333 NA Intergenic MER2|DNA|TcMar-Tigger -514427 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 155.5-59 chr8 120844594 120844845 + 0.833333 NA Intergenic AluJb|SINE|Alu -32673 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 238-29 chr8 117074885 117075347 + 0.833333 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -59879 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 157-29 chr16 6772282 6772515 + 0.833333 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -1411 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 194.667-22 chr15 86100131 86100525 + 0.833333 NA intron (NR_120368, intron 3 of 5) L1MA4A|LINE|L1 16389 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 160.333-24 chr19 8961612 8961901 + 0.833333 NA exon (NM_024690, exon 3 of 84) exon (NM_024690, exon 3 of 84) 19586 NM_024690 94025 Hs.432676 NM_024690 ENSG00000181143 MUC16 CA125 mucin 16, cell surface associated protein-coding 124.167-95 chr9 17056903 17057063 + 0.833333 NA Intergenic AluSx1|SINE|Alu -78057 NM_001365029 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 212.667-8 chr1 241621848 241622147 + 0.833333 NA intron (NM_014322, intron 1 of 3) intron (NM_014322, intron 1 of 3) 13933 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like Rab escort protein protein-coding 158.333-23 chr13 40621681 40622070 + 0.833333 NA intron (NM_002015, intron 1 of 2) intron (NM_002015, intron 1 of 2) 44766 NM_002015 2308 Hs.370666 NM_002015 ENSG00000150907 FOXO1 FKH1|FKHR|FOXO1A forkhead box O1 protein-coding 179.5-14 chr17 60572257 60572657 + 0.833333 NA intron (NR_126009, intron 2 of 3) L2b|LINE|L2 7911 NR_126009 388406 Hs.368309 NR_126009 ENSG00000267772 LINC01999 - long intergenic non-protein coding RNA 1999 ncRNA 154.833-34 chr2 184643758 184644012 + 0.833333 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 45356 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 156.667-20 chr10 114029368 114029684 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -14340 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 162.333-41 chr20 44561947 44562181 + 0.833333 NA intron (NM_007066, intron 1 of 3) FLAM_A|SINE|Alu -20515 NM_001281445 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 188.667-23 chr17 59872753 59873186 + 0.833333 NA intron (NM_001193612, intron 6 of 8) AluSq2|SINE|Alu 19974 NM_016261 51174 Hs.463638 NM_016261 ENSG00000108423 TUBD1 TUBD tubulin delta 1 protein-coding 278.667-16 chr5 78485701 78486149 + 0.833333 NA 3' UTR (NM_005779, exon 5 of 5) 3' UTR (NM_005779, exon 5 of 5) 125308 NM_001290229 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 243.167-18 chr8 137044606 137045034 + 0.833333 NA Intergenic Intergenic 368768 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 240.333-20 chr4 53812527 53813079 + 0.833333 NA Intergenic Intergenic 116902 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 250.5-19 chr5 24109215 24109674 + 0.833333 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 158096 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 128.5-35 chr2 35705388 35705621 + 0.833333 NA Intergenic Intergenic 234099 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 193.833-5 chr1 231877020 231877422 + 0.833333 NA intron (NM_001164541, intron 9 of 9) intron (NM_001164541, intron 9 of 9) -48613 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 142-23 chr11 73023613 73023877 + 0.833333 NA intron (NM_014824, intron 3 of 19) L1MC3|LINE|L1 118573 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 149.833-9 chr14 80366361 80366555 + 0.833333 NA intron (NR_038355, intron 3 of 8) intron (NR_038355, intron 3 of 8) -135401 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 286.833-6 chr8 121661005 121661449 + 0.833333 NA Intergenic (TTTTC)n|Simple_repeat|Simple_repeat -19787 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 200-7 chr11 28051176 28051489 + 0.833333 NA intron (NM_031217, intron 13 of 16) intron (NM_031217, intron 13 of 16) -5483 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 148.167-50 chr3 96431848 96432090 + 0.833333 NA Intergenic Intergenic 72005 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 135.167-65 chr3 95477859 95478094 + 0.833333 NA Intergenic MER74A|LTR|ERVL 205217 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 209.833-19 chr4 68132044 68132436 + 0.833333 NA Intergenic L1MA4A|LINE|L1 -2371 NM_207407 389208 Hs.677557 NM_207407 ENSG00000198092 TMPRSS11F - transmembrane serine protease 11F protein-coding 126-65 chr4 77190877 77191040 + 0.833333 NA Intergenic MIR|SINE|MIR 33751 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 177-2 chr1 155603828 155604211 + 0.833333 NA Intergenic Intergenic -6151 NM_001350783 55154 Hs.656547 NM_018116 ENSG00000125459 MSTO1 LST005|MMYAT|MST misato mitochondrial distribution and morphology regulator 1 protein-coding 148-78 chr8 24021960 24022194 + 0.833333 NA Intergenic L1M4|LINE|L1 -167271 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 116.333-24 chr11 115784721 115784931 + 0.833333 NA Intergenic Intergenic -24626 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 281.167-10 chr7 20588744 20589107 + 0.833333 NA Intergenic Intergenic -26742 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 173.833-18 chr12 27902777 27903094 + 0.833333 NA Intergenic Intergenic 67041 NM_198966 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 385-6 chr8 27181506 27182407 + 0.833333 NA Intergenic Charlie1a|DNA|hAT-Charlie 76448 NM_001283054 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 213.833-10 chr15 46213770 46214241 + 0.833333 NA Intergenic ERVL-B4-int|LTR|ERVL 508810 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 131.5-79 chr7 97648855 97649036 + 0.833333 NA Intergenic L1M5|LINE|L1 -83141 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 186.667-68 chr5 42248363 42248834 + 0.833333 NA Intergenic AluSp|SINE|Alu -73253 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 132.833-15 chr11 87240583 87240919 + 0.833333 NA intron (NR_033149, intron 5 of 13) intron (NR_033149, intron 5 of 13) 202817 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 143.833-57 chr8 138095558 138095750 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -12109 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 197.833-2 chr1 98141002 98141304 + 0.833333 NA Intergenic Intergenic -69558 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 139.333-68 chr4 73672326 73672507 + 0.833333 NA Intergenic Intergenic -51785 NM_201431 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 161-31 chr2 108282796 108283073 + 0.833333 NA Intergenic AluSz|SINE|Alu -5961 NM_001056 6819 Hs.436123 NM_001056 ENSG00000198203 SULT1C2 ST1C1|ST1C2|SULT1C1|humSULTC2 sulfotransferase family 1C member 2 protein-coding 198-16 chr14 55106664 55107010 + 0.833333 NA Intergenic Charlie15b|DNA|hAT-Charlie -22415 NM_002306 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 172-2 chr1 178437124 178437367 + 0.833333 NA intron (NM_004841, intron 3 of 15) intron (NM_004841, intron 3 of 15) -75864 NM_001170723 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 127.833-16 chr12 130261580 130261901 + 0.833333 NA Intergenic Intergenic -76147 NM_001190971 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 278.833-2 chr17 66246450 66246826 + 0.833333 NA Intergenic L3|LINE|CR1 -17223 NM_000042 350 Hs.445358 NM_000042 ENSG00000091583 APOH B2G1|B2GP1|BG apolipoprotein H protein-coding 163.5-76 chr8 105330343 105330539 + 0.833333 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 10898 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 159.667-62 chr3 116470111 116470509 + 0.833333 NA Intergenic AluJo|SINE|Alu -24823 NM_002338 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 126.167-85 chr7 123268146 123268462 + 0.833333 NA Intergenic Intergenic -68333 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 152-46 chr8 3625863 3626158 + 0.833333 NA intron (NM_033225, intron 7 of 69) intron (NM_033225, intron 7 of 69) -897559 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 131-65 chr7 97749403 97749579 + 0.833333 NA Intergenic (TAATATA)n|Simple_repeat|Simple_repeat 17405 NM_003182 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 188-57 chr7 14307480 14307812 + 0.833333 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -316221 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 205.333-22 chr2 12359797 12360274 + 0.833333 NA intron (NR_110196, intron 4 of 5) AluSz|SINE|Alu 160905 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 300.667-4 chr2 144009155 144009880 + 0.833333 NA intron (NM_001284238, intron 8 of 13) intron (NM_001284238, intron 8 of 13) 72450 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 121.5-36 chr14 67746354 67746653 + 0.833333 NA TTS (NM_015346) TTS (NM_015346) 44617 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 122.333-123 chr9 130706059 130706362 + 0.833333 NA Intergenic Intergenic -7671 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 154.167-46 chr3 106905548 106905796 + 0.833333 NA Intergenic Intergenic 334966 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 206.333-27 chr6 4414199 4414564 + 0.833333 NA Intergenic LTR12F|LTR|ERV1 -74417 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 208-28 chr4 38559005 38559518 + 0.833333 NA Intergenic Intergenic -4742 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 204.833-34 chr8 117154318 117154777 + 0.833333 NA intron (NM_173851, intron 3 of 7) intron (NM_173851, intron 3 of 7) 19552 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 178.5-6 chr1 241838694 241839186 + 0.833333 NA Intergenic Intergenic -9251 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 170-13 chr12 59131942 59132240 + 0.833333 NA Intergenic Intergenic -211553 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 117-48 chr2 14177694 14178103 + 0.833333 NA Intergenic Intergenic 223060 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 164.833-38 chr4 170185263 170185536 + 0.833333 NA Intergenic L1MA7|LINE|L1 -41192 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 125-17 chr11 6216493 6216742 + 0.833333 NA intron (NM_032127, intron 9 of 11) intron (NM_032127, intron 9 of 11) 11060 NM_173525 160298 Hs.278221 NM_173525 ENSG00000180878 C11orf42 - chromosome 11 open reading frame 42 protein-coding 149.333-61 chr21 22944841 22945106 + 0.833333 NA Intergenic Intergenic -134311 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 267.167-15 chr20 12718952 12719366 + 0.833333 NA Intergenic MIR|SINE|MIR 217804 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 193.667-30 chr2 170436969 170437306 + 0.833333 NA intron (NM_001083615, intron 22 of 33) MIRb|SINE|MIR -86194 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 164.333-24 chr17 10135909 10136226 + 0.833333 NA intron (NM_201433, intron 1 of 13) intron (NM_201433, intron 1 of 13) 62539 NM_201433 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 138-75 chr4 32199107 32199383 + 0.833333 NA Intergenic AluSc|SINE|Alu -151793 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 183.333-56 chr7 90443889 90444228 + 0.833333 NA Intergenic Intergenic -25581 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 141.333-100 chr9 68699475 68699702 + 0.833333 NA Intergenic Intergenic -5652 NM_003558 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 136.333-34 chr16 14162431 14162740 + 0.833333 NA intron (NM_001308142, intron 3 of 16) L1ME3A|LINE|L1 -24101 NM_001365415 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 156.833-31 chr21 21032317 21032567 + 0.833333 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) 34033 NM_001352592 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 133.833-17 chr11 76865415 76865592 + 0.833333 NA intron (NM_001300953, intron 1 of 9) Tigger6a|DNA|TcMar-Tigger 4585 NM_018367 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 140.5-62 chr5 120761500 120761793 + 0.833333 NA Intergenic L1MA4A|LINE|L1 230182 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 173.167-8 chr11 87855490 87855802 + 0.833333 NA Intergenic Intergenic -136235 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 116.5-93 chr8 111742107 111742344 + 0.833333 NA Intergenic Intergenic 365586 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 244-3 chr10 24605715 24606043 + 0.833333 NA intron (NM_001367447, intron 10 of 24) L1M5|LINE|L1 16964 NR_160024 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 258.333-5 chr10 27197107 27197596 + 0.833333 NA 3' UTR (NM_001352572, exon 13 of 13) 3' UTR (NM_001352572, exon 13 of 13) 42527 NM_001172303 84930 Hs.276905 NM_032844 ENSG00000120539 MASTL GREATWALL|GW|GWL|MAST-L|THC2 microtubule associated serine/threonine kinase like protein-coding 228.333-29 chr6 40819068 40819504 + 0.833333 NA Intergenic Intergenic 203994 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 157.167-33 chr2 179996828 179997103 + 0.833333 NA intron (NM_020943, intron 1 of 19) L1MEb|LINE|L1 10332 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 185.333-47 chr5 39410935 39411331 + 0.833333 NA intron (NM_001343, intron 1 of 14) intron (NM_001343, intron 1 of 14) 13847 NM_001343 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 218.833-25 chr5 65453485 65453763 + 0.833333 NA intron (NR_135689, intron 4 of 25) intron (NR_135689, intron 4 of 25) 28296 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 123-33 chr17 44971891 44972132 + 0.833333 NA Intergenic Intergenic -3708 NM_006688 10882 Hs.134012 NM_006688 ENSG00000131094 C1QL1 C1QRF|C1QTNF14|CRF|CTRP14 complement C1q like 1 protein-coding 116.333-63 chr3 86521475 86521775 + 0.833333 NA Intergenic L1MEd|LINE|L1 39682 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 249.5-8 chr14 69809690 69810141 + 0.833333 NA Intergenic AluY|SINE|Alu -1845 NR_149012 100506358 NR_149012 LOC100506358 - uncharacterized LOC100506358 ncRNA 150.5-71 chr6 151833755 151833951 + 0.833333 NA intron (NM_001328100, intron 1 of 6) L2a|LINE|L2 24746 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 190.833-22 chr2 17758985 17759351 + 0.833333 NA intron (NM_001130009, intron 1 of 13) intron (NM_001130009, intron 1 of 13) 5030 NM_001130009 348654 Hs.467793 NM_182625 ENSG00000178295 GEN1 Gen GEN1 Holliday junction 5' flap endonuclease protein-coding 205.333-29 chr2 173690890 173691217 + 0.833333 NA Intergenic Intergenic 272827 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 196.167-21 chr3 97400349 97400796 + 0.833333 NA intron (NM_001080448, intron 5 of 17) L1MA5|LINE|L1 -39035 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 221-24 chr5 125211203 125211573 + 0.833333 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 174557 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 343.833-2 chr1 205468357 205468827 + 0.833333 NA non-coding (NR_148934, exon 3 of 3) non-coding (NR_148934, exon 3 of 3) -12506 NR_103783 101669762 Hs.666219 NR_103783 BLACAT1 LINC00912|linc-UBC1|onco-lncRNA-30 bladder cancer associated transcript 1 ncRNA 114.5-85 chr7 69278238 69278479 + 0.833333 NA Intergenic Intergenic 319266 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 138.833-46 chr20 34937098 34937290 + 0.833333 NA intron (NM_000178, intron 6 of 12) intron (NM_000178, intron 6 of 12) 18441 NM_001322495 2937 Hs.82327 NM_000178 ENSG00000100983 GSS GSHS|HEL-S-64p|HEL-S-88n glutathione synthetase protein-coding 139.833-36 chr18 6239388 6239607 + 0.833333 NA intron (NM_001365769, intron 9 of 16) intron (NM_001365769, intron 9 of 16) -17247 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 171-48 chr5 120907670 120907993 + 0.833333 NA Intergenic Intergenic 376367 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 114.667-42 chr2 10959254 10959557 + 0.833333 NA Intergenic L1M5|LINE|L1 47471 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 126.667-18 chr14 31398324 31398558 + 0.833333 NA intron (NM_015473, intron 4 of 35) intron (NM_015473, intron 4 of 35) 22109 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 142.167 chr1 64769723 64769948 + 0.833333 NA intron (NM_001366165, intron 2 of 11) MLT1I|LTR|ERVL-MaLR 24760 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 161.333-56 chr5 17019810 17020214 + 0.833333 NA Intergenic Charlie4z|DNA|hAT-Charlie -83724 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 113.5-25 chr12 32554189 32554557 + 0.833333 NA intron (NM_001304480, intron 1 of 16) intron (NM_001304480, intron 1 of 16) 20080 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 122.833-8 chr1 236514291 236514495 + 0.833333 NA Intergenic Charlie2b|DNA|hAT-Charlie -3821 NM_201545 3964 Hs.4082 NM_006499 ENSG00000116977 LGALS8 Gal-8|PCTA-1|PCTA1|Po66-CBP galectin 8 protein-coding 209-31 chr3 10582895 10583357 + 0.833333 NA intron (NM_001353564, intron 1 of 20) intron (NM_001353564, intron 1 of 20) 36835 NM_001353564 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 143.5-17 chr12 109513681 109513934 + 0.833333 NA intron (NM_130466, intron 18 of 27) intron (NM_130466, intron 18 of 27) 36173 NM_130466 89910 Hs.374067 NM_130466 ENSG00000151148 UBE3B BPIDS|KOS ubiquitin protein ligase E3B protein-coding 129.833-23 chr14 83388204 83388668 + 0.833333 NA Intergenic L1MA9|LINE|L1 745804 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 197.167-19 chr17 59006257 59006681 + 0.833333 NA intron (NR_148346, intron 22 of 23) intron (NR_148346, intron 22 of 23) 100411 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 170.5-71 chr9 36779762 36780220 + 0.833333 NA Intergenic L2a|LINE|L2 43608 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 199.167-20 chr2 135436864 135437275 + 0.833333 NA intron (NM_001286569, intron 2 of 21) AluSx1|SINE|Alu 93516 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 147.333-26 chr14 61927900 61928236 + 0.833333 NA intron (NM_001367663, intron 1 of 7) intron (NM_001367663, intron 1 of 7) 373 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 219-21 chr3 194622614 194623082 + 0.833333 NA intron (NM_001166305, intron 5 of 10) AluSz|SINE|Alu 10571 NM_001166306 93109 Hs.478729 NM_138399 ENSG00000145014 TMEM44 - transmembrane protein 44 protein-coding 228-28 chr6 63821103 63821400 + 0.833333 NA non-coding (NR_157848, exon 2 of 2) non-coding (NR_157848, exon 2 of 2) 14415 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 222-8 chr11 113587316 113587670 + 0.833333 NA Intergenic Intergenic -112095 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 122.667 chr1 39564518 39564777 + 0.833333 NA promoter-TSS (NR_125979) promoter-TSS (NR_125979) -423 NR_125979 101929516 Hs.662694 NR_125979 ENSG00000228060 PABPC4-AS1 - PABPC4 antisense RNA 1 ncRNA 225.167-7 chr12 125682722 125683437 + 0.833333 NA Intergenic Intergenic 60627 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 152.833-14 chr12 68639026 68639374 + 0.833333 NA intron (NM_015646, intron 1 of 7) intron (NM_015646, intron 1 of 7) -11825 NR_033335 100379132 Hs.724530 NR_033335 ENSG00000206650 SNORA70G U70G small nucleolar RNA, H/ACA box 70G snoRNA 156.833-55 chr7 127048590 127048861 + 0.833333 NA intron (NM_001371085, intron 3 of 10) intron (NM_001371085, intron 3 of 10) 9459 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 237.333-31 chr4 162200962 162201513 + 0.833333 NA Intergenic Intergenic -37203 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 191.833-25 chr4 171121901 171122354 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL -64057 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 176.833-10 chr14 53594681 53595098 + 0.833333 NA Intergenic L1MB7|LINE|L1 353595 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 133.833-65 chr5 89510640 89510939 + 0.833333 NA Intergenic Intergenic 505931 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 149.167-14 chr12 114606288 114606641 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR 77711 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 245.667-22 chr20 6381358 6381814 + 0.833333 NA Intergenic Intergenic -45146 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 177.833-20 chr2 157232462 157232780 + 0.833333 NA Intergenic L1MEg|LINE|L1 -25084 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 217.667-37 chr5 121160064 121160428 + 0.833333 NA Intergenic Intergenic -162304 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 215.167-11 chr14 85649300 85649649 + 0.833333 NA 3' UTR (NM_013231, exon 2 of 2) 3' UTR (NM_013231, exon 2 of 2) 116125 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 210.167 chr1 57532280 57532840 + 0.833333 NA intron (NM_001353980, intron 4 of 5) L2c|LINE|L2 -107639 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 121.333-103 chr7 143492660 143492918 + 0.833333 NA intron (NR_033897, intron 2 of 4) intron (NR_033897, intron 2 of 4) 14916 NM_176883 259287 Hs.650648 NM_176883 ENSG00000221855 TAS2R41 T2R41|T2R59 taste 2 receptor member 41 protein-coding 125.667-53 chr2 23683521 23683967 + 0.833333 NA intron (NM_052920, intron 5 of 13) intron (NM_052920, intron 5 of 13) 243379 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 319.833-7 chr8 114833707 114834297 + 0.833333 NA Intergenic L1M5|LINE|L1 834011 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 133.167-32 chr2 141550970 141551263 + 0.833333 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 580585 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 190.667-55 chr7 91422577 91422842 + 0.833333 NA Intergenic Intergenic 158276 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 187.5-17 chr15 75428949 75429286 + 0.833333 NA intron (NM_015477, intron 2 of 20) Tigger2a|DNA|TcMar-Tigger 22573 NM_001145358 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 171.833-13 chr12 81598757 81599096 + 0.833333 NA promoter-TSS (NM_001220478) promoter-TSS (NM_001220478) -555 NM_001220478 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 202.333-30 chr3 108490411 108490806 + 0.833333 NA intron (NM_014981, intron 10 of 41) L2a|LINE|L2 38714 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 220.167-9 chr13 58670193 58670605 + 0.833333 NA Intergenic LTR80B|LTR|ERVL -437282 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 247.667-11 chr2 7343316 7343970 + 0.833333 NA Intergenic AluSx|SINE|Alu -77618 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 138.833-76 chr6 84405925 84406105 + 0.833333 NA Intergenic MIR|SINE|MIR 68914 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 159.667-39 chr15 95639356 95639594 + 0.833333 NA Intergenic Intergenic 206382 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 281.667-6 chr11 56609428 56609873 + 0.833333 NA Intergenic L1M5|LINE|L1 3852 NM_001004740 390168 Hs.553751 NM_001004740 ENSG00000255012 OR5M1 OR11-208|OST050 olfactory receptor family 5 subfamily M member 1 protein-coding 299.666 chr1 7490132 7490689 + 0.833333 NA intron (NM_001349608, intron 5 of 21) AluSx|SINE|Alu -100656 NR_146199 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 138.833-50 chr21 23596652 23596910 + 0.833333 NA Intergenic L1MC1|LINE|L1 -211946 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 162.833-33 chr4 134340683 134340972 + 0.833333 NA Intergenic Intergenic -83041 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 162.5-52 chr4 17998678 17998914 + 0.833333 NA intron (NR_158566, intron 1 of 5) AluJb|SINE|Alu 22959 NR_136669 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 219.833 chr1 76852473 76852813 + 0.833333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -14837 NM_001320274 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 169-52 chr6 123636232 123636469 + 0.833333 NA intron (NM_001256020, intron 1 of 8) intron (NM_001256020, intron 1 of 8) 600 NM_001256020 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 125.667-96 chr5 40520127 40520343 + 0.833333 NA Intergenic Intergenic -159680 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 114-38 chr13 59319956 59320363 + 0.833333 NA Intergenic Intergenic -692559 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 244.833-16 chr6 105937878 105938250 + 0.833333 NA Intergenic L2a|LINE|L2 -148272 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 119.167 chr1 50488640 50488885 + 0.833333 NA intron (NM_007051, intron 17 of 18) MIRb|SINE|MIR -65319 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 167.167-22 chr12 85504183 85504424 + 0.833333 NA Intergenic Intergenic 224083 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 195-27 chr3 37132342 37132734 + 0.833333 NA intron (NM_006309, intron 2 of 27) intron (NM_006309, intron 2 of 27) 42044 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 151.167-59 chrX 92231376 92231647 + 0.833333 NA intron (NM_032969, intron 3 of 5) intron (NM_032969, intron 3 of 5) 396050 NM_032969 27328 Hs.655673 NM_014522 ENSG00000102290 PCDH11X PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119 protocadherin 11 X-linked protein-coding 141.667-34 chr16 55605427 55605808 + 0.833333 NA Intergenic MLT2D|LTR|ERVL 38933 NM_032330 84290 Hs.660027 NM_032330 ENSG00000256812 CAPNS2 CSS2 calpain small subunit 2 protein-coding 249.333-11 chr19 27631689 27632205 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -161484 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 179-18 chr18 9005243 9005572 + 0.833333 NA Intergenic AluSz|SINE|Alu -97292 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 150-41 chr2 138378538 138378904 + 0.833333 NA Intergenic Intergenic -123049 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 202.167-6 chr10 104984938 104985263 + 0.833333 NA intron (NM_014978, intron 4 of 26) Tigger1|DNA|TcMar-Tigger -318884 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 119.833-93 chr9 36701180 36701467 + 0.833333 NA Intergenic MIR3|SINE|MIR 122276 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 129.667-78 chr4 113265109 113265296 + 0.833333 NA intron (NM_001354275, intron 15 of 43) Kanga11a|DNA|TcMar-Tc2 -27637 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 174.667-27 chr16 31033403 31033652 + 0.833333 NA promoter-TSS (NM_001272095) promoter-TSS (NM_001272095) -31 NM_004604 6810 Hs.83734 NM_004604 ENSG00000103496 STX4 STX4A|p35-2 syntaxin 4 protein-coding 226.667-22 chr4 26540132 26540582 + 0.833333 NA Intergenic MLT2B3|LTR|ERVL -43567 NM_001292054 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 184.167-47 chr8 121886721 121887050 + 0.833333 NA Intergenic L1PA16|LINE|L1 -245445 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 144.167-61 chr5 123971173 123971394 + 0.833333 NA Intergenic Intergenic 425866 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 123.833-75 chr9 78820934 78821156 + 0.833333 NA Intergenic Intergenic 324621 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 229-6 chr10 109907397 109907717 + 0.833333 NA intron (NM_001324131, intron 3 of 20) intron (NM_001324131, intron 3 of 20) 15689 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 126.5-16 chr12 77330280 77330537 + 0.833333 NA Intergenic MIR|SINE|MIR -264839 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 200.167-47 chr9 76989395 76989895 + 0.833333 NA Intergenic Intergenic -30010 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 312.333 chr1 190968424 190968920 + 0.833333 NA Intergenic L1MEc|LINE|L1 259826 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 336.333-2 chr22 31920082 31920636 + 0.833333 NA Intergenic L2a|LINE|L2 18095 NM_001302819 25775 Hs.627602 NM_015372 ENSG00000128254 C22orf24 HSN44A4A chromosome 22 open reading frame 24 protein-coding 123.5-12 chr10 68814892 68815072 + 0.833333 NA Intergenic AluJb|SINE|Alu -12549 NM_001130161 219736 Hs.37636 NM_152709 ENSG00000165730 STOX1 C10orf24 storkhead box 1 protein-coding 170.167-8 chr11 28626822 28627261 + 0.833333 NA Intergenic L2a|LINE|L2 -149493 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 147.5-72 chr5 131961154 131961732 + 0.833333 NA intron (NM_015256, intron 18 of 20) AluSx1|SINE|Alu -15780 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 135-90 chr8 76136171 76136483 + 0.833333 NA Intergenic Intergenic -270327 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 247.333-22 chr5 60113089 60113460 + 0.833333 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) -219548 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 118.167-11 chr10 95035389 95035686 + 0.833333 NA Intergenic L1MC4|LINE|L1 33960 NM_001198853 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 150.167-11 chr12 28322572 28322862 + 0.833333 NA intron (NM_001352084, intron 6 of 11) intron (NM_001352084, intron 6 of 11) -131979 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 180.333-8 chr10 10800035 10800312 + 0.833333 NA intron (NM_001326327, intron 1 of 14) intron (NM_001326327, intron 1 of 14) 1448 NM_001326327 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 166-10 chr10 28674853 28675083 + 0.833333 NA Intergenic MLT1O|LTR|ERVL-MaLR -2553 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 167.833-42 chr4 56377309 56377741 + 0.833333 NA intron (NM_001286670, intron 3 of 11) intron (NM_001286670, intron 3 of 11) 9966 NM_181806 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 116.167-79 chr8 117825210 117825499 + 0.833333 NA intron (NM_000127, intron 4 of 10) intron (NM_000127, intron 4 of 10) 95559 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 208.5-33 chr4 43483552 43483980 + 0.833333 NA intron (NR_146993, intron 1 of 2) L1MEf|LINE|L1 8777 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 144.5-4 chr1 113861634 113861925 + 0.833333 NA intron (NM_012411, intron 1 of 18) intron (NM_012411, intron 1 of 18) 5144 NR_037864 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 146.333-54 chr2 151750320 151750525 + 0.833333 NA Intergenic AluJr4|SINE|Alu -15935 NM_001164507 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 158-64 chrX 24734535 24734819 + 0.833333 NA intron (NM_016937, intron 17 of 36) AluSz|SINE|Alu -9764 NR_003007 677773 Hs.689695 NR_003007 ENSG00000251869 SCARNA23 ACA12 small Cajal body-specific RNA 23 ncRNA 197.333-24 chr17 48332181 48332680 + 0.833333 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) 38083 NR_131240 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 166.333-83 chr9 7267261 7267675 + 0.833333 NA Intergenic Intergenic 510118 NM_001354000 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 114-63 chr21 23564074 23564223 + 0.833333 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -179313 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 149.667-3 chr1 111210210 111210535 + 0.833333 NA Intergenic L1MC2|LINE|L1 -5834 NM_001271833 79961 Hs.557850 NM_024901 ENSG00000162777 DENND2D - DENN domain containing 2D protein-coding 223.5-12 chr2 19605700 19606065 + 0.833333 NA Intergenic L3|LINE|CR1 -247259 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 236.167-11 chr2 15247381 15247707 + 0.833333 NA intron (NR_052013, intron 44 of 50) L1PA7|LINE|L1 313790 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 233.5 chr1 22601766 22602294 + 0.833333 NA 3' UTR (NM_020526, exon 17 of 17) 3' UTR (NM_020526, exon 17 of 17) 31336 NR_106742 102466615 NR_106742 ENSG00000276835 MIR6127 hsa-mir-6127 microRNA 6127 ncRNA 185.833-25 chr3 190987626 190987987 + 0.833333 NA Intergenic MSTA-int|LTR|ERVL-MaLR 109876 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 200.333-42 chr9 87476196 87476562 + 0.833333 NA Intergenic Intergenic -20849 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 157.333-2 chr1 92142210 92142529 + 0.833333 NA intron (NM_183242, intron 7 of 8) LTR78B|LTR|ERV1 -26555 NM_015237 23285 Hs.21554 NM_015237 ENSG00000189195 KIAA1107 - KIAA1107 protein-coding 222.667-29 chr5 94131529 94131889 + 0.833333 NA Intergenic LTR81C|LTR|Gypsy -20010 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 185.167-10 chr12 17999641 17999887 + 0.833333 NA Intergenic L1M3e|LINE|L1 90429 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 145.333-37 chr2 28478524 28478827 + 0.833333 NA Intergenic Intergenic -17385 NM_153021 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 113.333-110 chr8 136634962 136635303 + 0.833333 NA intron (NR_147196, intron 2 of 5) MADE1|DNA|TcMar-Mariner 104334 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 258.833 chr1 225303056 225303636 + 0.833333 NA exon (NM_001367479, exon 57 of 86) exon (NM_001367479, exon 57 of 86) 124692 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 233.167-10 chr14 61676608 61677031 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -18694 NM_001530 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 148.833-18 chr14 54707936 54708280 + 0.833333 NA intron (NM_001161576, intron 2 of 10) L2a|LINE|L2 -46725 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 184-10 chr11 41937184 41937631 + 0.833333 NA Intergenic Intergenic 148051 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 178-37 chr3 175016526 175016812 + 0.833333 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 98573 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 159.5-11 chr12 23551647 23552314 + 0.833333 NA intron (NM_001261414, intron 13 of 16) intron (NM_001261414, intron 13 of 16) 32606 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 184.167-3 chr1 98029889 98030230 + 0.833333 NA intron (NR_046105, intron 3 of 4) intron (NR_046105, intron 3 of 4) 15292 NR_039604 100616452 NR_039604 ENSG00000284247 MIR2682 mir-2682 microRNA 2682 ncRNA 148.333-94 chr7 100736335 100736695 + 0.833333 NA exon (NM_173059, exon 4 of 46) exon (NM_173059, exon 4 of 46) 2920 NM_173059 7455 Hs.307004 NM_003386 ENSG00000146839 ZAN - zonadhesin (gene/pseudogene) protein-coding 256.5-28 chr5 101996405 101996983 + 0.833333 NA Intergenic Intergenic 299590 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 181-31 chr18 73171678 73172026 + 0.833333 NA intron (NR_034133, intron 3 of 5) (AAAC)n|Simple_repeat|Simple_repeat 92646 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 245-18 chr8 76751926 76752347 + 0.833333 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -68861 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 146.667-56 chr20 8447054 8447367 + 0.833333 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 198506 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 113.333-28 chr12 29052865 29053139 + 0.833333 NA Intergenic L1ME1|LINE|L1 -96276 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 192.5-35 chr3 187702250 187702514 + 0.833333 NA promoter-TSS (NR_034062) promoter-TSS (NR_034062) 16 NR_034062 100131635 Hs.434448 NR_034062 ENSG00000228804 LOC100131635 - hCG1645011-like ncRNA 173.333-12 chr11 87132916 87133307 + 0.833333 NA intron (NM_001168724, intron 4 of 13) MER44B|DNA|TcMar-Tigger 95177 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 141.333-22 chr12 96715904 96716090 + 0.833333 NA intron (NM_001306084, intron 48 of 67) intron (NM_001306084, intron 48 of 67) -191260 NM_152905 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 196.833-27 chr9 98152365 98152775 + 0.833333 NA intron (NM_003389, intron 2 of 11) AluJo|SINE|Alu 20322 NM_003389 7464 Hs.113094 NM_003389 ENSG00000106789 CORO2A CLIPINB|IR10|WDR2 coronin 2A protein-coding 135.167-79 chr5 141444487 141444748 + 0.833333 NA intron (NM_003735, intron 1 of 3) L1M5|LINE|L1 14110 NM_003735 26025 Hs.368160 NM_003735 ENSG00000253159 PCDHGA12 CDH21|FIB3|PCDH-GAMMA-A12 protocadherin gamma subfamily A, 12 protein-coding 128.333-31 chr13 97094236 97094416 + 0.833333 NA Intergenic MER20|DNA|hAT-Charlie 85296 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 179.833-22 chr3 112303645 112304077 + 0.833333 NA intron (NR_147411, intron 1 of 4) HERV3-int|LTR|ERV1 1383 NR_147411 105374042 Hs.436357 NR_147411 ENSG00000239482 LOC105374042 - uncharacterized LOC105374042 ncRNA 133.334-5 chr3 28976235 28976784 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR 304430 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 348.5-6 chr8 84300945 84301550 + 0.833333 NA intron (NM_001354320, intron 2 of 9) L1PA15|LINE|L1 -114237 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 152.333-50 chr5 13472061 13472390 + 0.833333 NA Intergenic L1MB2|LINE|L1 -439339 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 186.5-6 chr1 244817779 244818106 + 0.833333 NA Intergenic MER41-int|LTR|ERV1 -17364 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 122.333-102 chr7 36354850 36355096 + 0.833333 NA intron (NM_001300956, intron 1 of 5) intron (NM_001300956, intron 1 of 5) 12267 NM_001300956 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 201.833-5 chr12 75907516 75907962 + 0.833333 NA Intergenic MSTB2|LTR|ERVL-MaLR 124037 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 145.167-26 chr16 76095709 76096081 + 0.833333 NA Intergenic Intergenic -181506 NM_001322179 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 124.833-52 chr20 7873532 7873812 + 0.833333 NA Intergenic Intergenic 66786 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 183.5-30 chr2 28373963 28374534 + 0.833333 NA Intergenic Intergenic -18610 NM_005253 2355 Hs.220971 NM_005253 ENSG00000075426 FOSL2 FRA2 FOS like 2, AP-1 transcription factor subunit protein-coding 198-4 chr1 50987779 50988132 + 0.833333 NA Intergenic L1PA8A|LINE|L1 17710 NM_078626 1031 Hs.525324 NM_001262 ENSG00000123080 CDKN2C INK4C|p18|p18-INK4C cyclin dependent kinase inhibitor 2C protein-coding 160.333-62 chr8 56119320 56119622 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -5489 NM_005372 4342 Hs.533432 NM_005372 ENSG00000172680 MOS MSV MOS proto-oncogene, serine/threonine kinase protein-coding 140.5-63 chr5 141416801 141417036 + 0.833333 NA promoter-TSS (NM_032101) promoter-TSS (NM_032101) -759 NM_018927 56099 Hs.368160 NM_018927 ENSG00000254122 PCDHGB7 ME6|PCDH-GAMMA-B7 protocadherin gamma subfamily B, 7 protein-coding 255.166 chr11 55757964 55758639 + 0.833333 NA Intergenic L1PB|LINE|L1 -15137 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 137.667-35 chr16 11021839 11022204 + 0.833333 NA intron (NM_015226, intron 11 of 22) intron (NM_015226, intron 11 of 22) 77457 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 166.333-40 chr2 124794858 124795200 + 0.833333 NA intron (NM_130773, intron 18 of 23) intron (NM_130773, intron 18 of 23) 769742 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 178.5-45 chr2 166812160 166812595 + 0.833333 NA Intergenic L1MC3|LINE|L1 -76110 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 225.5-12 chr12 99420684 99421099 + 0.833333 NA intron (NM_152788, intron 11 of 25) intron (NM_152788, intron 11 of 25) -226862 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 143.667-64 chr20 2554387 2554633 + 0.833333 NA intron (NM_080751, intron 2 of 19) L1MC2|LINE|L1 17903 NM_080751 117532 Hs.352626 NM_080751 ENSG00000149488 TMC2 C20orf145 transmembrane channel like 2 protein-coding 192.5-37 chr4 48349401 48349765 + 0.833333 NA intron (NM_020846, intron 1 of 7) L1ME4a|LINE|L1 8054 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 183.167-14 chr13 106810880 106811191 + 0.833333 NA Intergenic Intergenic 157155 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 140.833-15 chr12 62027336 62027602 + 0.833333 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 165370 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 232.5-25 chr4 37494091 37494579 + 0.833333 NA intron (NM_001104629, intron 1 of 3) L1PA13|LINE|L1 40410 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 115.333-6 chr1 178688414 178688813 + 0.833333 NA Intergenic MamRep605|LTR?|LTR? 10864 NR_039622 100616328 NR_039622 ENSG00000266417 MIR4424 - microRNA 4424 ncRNA 127.167-30 chr14 52851294 52851680 + 0.833333 NA Intergenic L1ME3D|LINE|L1 -59880 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 143.5-12 chr11 130869378 130869905 + 0.833333 NA non-coding (NR_125382, exon 1 of 1) non-coding (NR_125382, exon 1 of 1) 606 NR_125382 103611081 Hs.430300 NR_125382 ENSG00000255455 LOC103611081 - uncharacterized LOC103611081 ncRNA 218.833-4 chr10 53064928 53065279 + 0.833333 NA Intergenic Intergenic -293403 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 170.833-41 chr6 35166508 35166916 + 0.833333 NA Intergenic Intergenic -25302 NM_001261819 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 131.333-95 chr7 125587480 125587637 + 0.833333 NA Intergenic Intergenic -323267 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 236.667-17 chr2 55562257 55562762 + 0.833333 NA intron (NM_020463, intron 13 of 14) THE1D|LTR|ERVL-MaLR 42914 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 120.167-67 chr5 176691716 176691870 + 0.833333 NA Intergenic MLT1L|LTR|ERVL-MaLR 44309 NM_001006616 26262 Hs.532129 NM_012171 ENSG00000048140 TSPAN17 FBX23|FBXO23|TM4SF17 tetraspanin 17 protein-coding 169.833-4 chr1 240003037 240003434 + 0.833333 NA Intergenic Intergenic -4289 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 158-8 chr10 28215195 28215445 + 0.833333 NA intron (NR_134517, intron 2 of 16) LTR8|LTR|ERV1 66803 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 168.167-54 chr7 114029521 114029948 + 0.833333 NA Intergenic MIRb|SINE|MIR -56593 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 254.667-21 chr3 115263189 115263628 + 0.833333 NA Intergenic MIRc|SINE|MIR -116120 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 229.833-4 chr11 100463953 100464355 + 0.833333 NA Intergenic Intergenic -223134 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 229.167-3 chr10 22488796 22489190 + 0.833333 NA Intergenic Intergenic -51064 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 194.167-25 chr4 89499529 89499951 + 0.833333 NA Intergenic Intergenic -191940 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 164.333-47 chr4 30441252 30441675 + 0.833333 NA Intergenic MLT1J1|LTR|ERVL-MaLR -278906 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 190.167-42 chr7 48461317 48461585 + 0.833333 NA intron (NM_152701, intron 43 of 61) intron (NM_152701, intron 43 of 61) 289993 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 149.833-17 chr2 43968097 43968415 + 0.833333 NA intron (NM_133259, intron 11 of 37) intron (NM_133259, intron 11 of 37) 27733 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 199.833-32 chr9 137202500 137202779 + 0.833333 NA Intergenic Intergenic -1898 NM_001128228 286262 Hs.323445 NM_173691 ENSG00000176058 TPRN C9orf75|DFNB79 taperin protein-coding 167.5-17 chr11 73483418 73483690 + 0.833333 NA intron (NM_001286051, intron 1 of 5) intron (NM_001286051, intron 1 of 5) 106886 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 222.333-32 chr7 115493826 115494262 + 0.833333 NA Intergenic Intergenic 87397 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 115.5-73 chr4 52385598 52385801 + 0.833333 NA Intergenic L1PA16|LINE|L1 270840 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 154.833-29 chr2 145702520 145702842 + 0.833333 NA Intergenic L1MA2|LINE|L1 -884376 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 153.167-4 chr10 42363367 42363582 + 0.833333 NA intron (NR_024380, intron 1 of 2) intron (NR_024380, intron 1 of 2) 4571 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 348.667-4 chr3 129649373 129650215 + 0.833333 NA 3' UTR (NM_001349272, exon 4 of 4) 3' UTR (NM_001349272, exon 4 of 4) 38938 NM_001349272 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 377-2 chr18 56981463 56982291 + 0.833333 NA intron (NM_015285, intron 26 of 27) intron (NM_015285, intron 26 of 27) 90242 NR_152602 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 191.833-21 chr4 38035484 38035828 + 0.833333 NA exon (NM_015173, exon 8 of 20) exon (NM_015173, exon 8 of 20) -74525 NM_001253913 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 141.833-34 chr5 37991000 37991349 + 0.833333 NA Intergenic Intergenic -34523 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 142.333-21 chr11 103188652 103188859 + 0.833333 NA intron (NM_001377, intron 44 of 88) intron (NM_001377, intron 44 of 88) 79329 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 149.5-28 chr17 34748769 34749266 + 0.833333 NA Intergenic L1ME1|LINE|L1 168268 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 199.667-12 chr12 841089 841432 + 0.833333 NA intron (NM_001184985, intron 4 of 27) L1MB7|LINE|L1 88337 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 183.5-6 chr10 83603784 83604113 + 0.833333 NA Intergenic LTR33A_|LTR|ERVL 73141 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 135.333-46 chr2 225958489 225958848 + 0.833333 NA Intergenic L1M4a2|LINE|L1 -184126 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 220.833 chr1 145740282 145740697 + 0.833333 NA 3' UTR (NM_014455, exon 9 of 9) 3' UTR (NM_014455, exon 9 of 9) 20990 NR_103845 11126 Hs.488237 NM_007053 ENSG00000117281 CD160 BY55|NK1|NK28 CD160 molecule protein-coding 191.167-30 chr6 82690981 82691274 + 0.833333 NA Intergenic HAL1|LINE|L1 326883 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 227-5 chr12 33170273 33170705 + 0.833333 NA Intergenic Intergenic 269330 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 223.5-2 chr1 90562411 90562877 + 0.833333 NA Intergenic MIRb|SINE|MIR -95106 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 171.833-21 chr2 8980638 8980926 + 0.833333 NA intron (NR_135603, intron 1 of 13) L1MB8|LINE|L1 22902 NR_135604 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 168.833-35 chr3 28422303 28422555 + 0.833333 NA intron (NM_001040432, intron 3 of 9) L1MC1|LINE|L1 73280 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 359.167-4 chr9 30850551 30851392 + 0.833333 NA Intergenic Intergenic -442517 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 146-59 chr5 159421723 159421960 + 0.833333 NA Intergenic Intergenic 44435 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 204.833-24 chr5 83760994 83761444 + 0.833333 NA Intergenic Intergenic -40364 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 255.167-9 chr5 35988591 35988955 + 0.833333 NA intron (NM_001171873, intron 2 of 5) intron (NM_001171873, intron 2 of 5) 2617 NM_152404 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 267.667 chr10 16576246 16576837 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR -54662 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 230.333-24 chr6 19702601 19702961 + 0.833333 NA Intergenic Intergenic 101978 NR_134651 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 197.333-45 chr5 22370733 22371250 + 0.833333 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -157141 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 157.667-34 chr2 66450899 66451156 + 0.833333 NA intron (NM_002398, intron 6 of 12) intron (NM_002398, intron 6 of 12) -10697 NR_046625 100873998 Hs.734698 NR_046625 ENSG00000230749 MEIS1-AS2 MEIS1-AS1 MEIS1 antisense RNA 2 ncRNA 117.833-22 chr12 116214910 116215165 + 0.833333 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) 62149 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 135.333-59 chr4 94450996 94451181 + 0.833333 NA promoter-TSS (NM_001256425) promoter-TSS (NM_001256425) -769 NM_001256425 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 184-49 chr5 56503808 56504227 + 0.833333 NA Intergenic MIRc|SINE|MIR -22248 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 147.5-80 chr8 90078781 90079047 + 0.833333 NA intron (NM_004929, intron 2 of 10) intron (NM_004929, intron 2 of 10) 3965 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 193.833-29 chr5 156589962 156590467 + 0.833333 NA intron (NM_001128209, intron 4 of 7) intron (NM_001128209, intron 4 of 7) -260081 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 174.833-4 chr10 91258747 91259242 + 0.833333 NA intron (NM_001256549, intron 6 of 9) intron (NM_001256549, intron 6 of 9) 38331 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 182.333-17 chr14 54678985 54679288 + 0.833333 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) -75697 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 130.167-58 chr5 143639939 143640137 + 0.833333 NA Intergenic Intergenic -39822 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 115.167-100 chr7 135766454 135766607 + 0.833333 NA Intergenic Intergenic -17717 NM_001369697 389558 Hs.55200 NM_205855 ENSG00000189320 FAM180A UNQ1940 family with sequence similarity 180 member A protein-coding 126.667-54 chr22 35281431 35281604 + 0.833333 NA intron (NM_001003681, intron 5 of 10) intron (NM_001003681, intron 5 of 10) -17758 NM_001135729 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 214-10 chr12 75706598 75707066 + 0.833333 NA Intergenic Intergenic -195223 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 120.5-32 chr14 75419979 75420193 + 0.833333 NA Intergenic Intergenic -7638 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 186.5-2 chr1 54314646 54314904 + 0.833333 NA intron (NM_001009955, intron 4 of 16) L3|LINE|CR1 78332 NR_103541 619518 Hs.591438 NM_001034847 ENSG00000198711 SSBP3-AS1 C1orf191|MST128|MSTP128 SSBP3 antisense RNA 1 ncRNA 123.5-28 chr14 60933641 60934081 + 0.833333 NA intron (NM_001177963, intron 6 of 6) intron (NM_001177963, intron 6 of 6) 47218 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 214.667-17 chr19 13328028 13328362 + 0.833333 NA intron (NM_023035, intron 10 of 46) AluJr|SINE|Alu 177784 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 248-26 chrX 72002567 72003048 + 0.833333 NA intron (NM_001013627, intron 1 of 7) MIRb|SINE|MIR -41602 NR_002309 441502 Hs.449523 NR_002309 RPS26P11 RPS26L1|RPS26_22_1784|bA366E13.1 ribosomal protein S26 pseudogene 11 pseudo 203.667-8 chr11 108745697 108746049 + 0.833333 NA intron (NM_004398, intron 13 of 17) intron (NM_004398, intron 13 of 17) 80804 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 243.333-6 chr14 26058472 26058930 + 0.833333 NA Intergenic LTR81B|LTR|Gypsy 494729 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 137.667-63 chr21 18102323 18102576 + 0.833333 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -142384 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 122.5-93 chr8 7047895 7048085 + 0.833333 NA Intergenic L1M1|LINE|L1 8749 NM_021010 1670 Hs.655233 NM_021010 ENSG00000164816 DEFA5 DEF5|HD-5 defensin alpha 5 protein-coding 129.333-48 chr2 108452027 108452334 + 0.833333 NA intron (NM_181453, intron 3 of 22) L1MC5|LINE|L1 2974 NR_028063 9648 Hs.436505 NM_181453 ENSG00000135968 GCC2 GCC185|RANBP2L4|REN53 GRIP and coiled-coil domain containing 2 protein-coding 165.5-52 chr6 73003277 73003603 + 0.833333 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) -35687 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 299.833-3 chr2 70636886 70637472 + 0.833333 NA Intergenic HAL1|LINE|L1 -83353 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 182.833-61 chr9 102858439 102858789 + 0.833333 NA Intergenic HERV16-int|LTR|ERVL -136719 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 265.5-4 chr14 88921290 88921889 + 0.833333 NA Intergenic MLT2B3|LTR|ERVL 96938 NM_001366535 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 155.833-9 chr10 56828714 56829008 + 0.833333 NA Intergenic L1PB4|LINE|L1 -467588 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 315.167-10 chr22 41334745 41335162 + 0.833333 NA intron (NM_017590, intron 7 of 22) intron (NM_017590, intron 7 of 22) -32380 NM_001145398 7008 Hs.181159 NM_003216 ENSG00000167074 TEF - TEF transcription factor, PAR bZIP family member protein-coding 113.833-61 chr4 35978685 35978927 + 0.833333 NA Intergenic MIR|SINE|MIR 265133 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 218.833-24 chr5 32132645 32133123 + 0.833333 NA intron (NM_022130, intron 3 of 3) intron (NM_022130, intron 3 of 3) 41435 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 184.833-23 chr4 46234612 46234862 + 0.833333 NA Intergenic Intergenic -110683 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 117.333-44 chr2 39264540 39264693 + 0.833333 NA intron (NM_003618, intron 28 of 33) intron (NM_003618, intron 28 of 33) -20633 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 205.833-15 chr19 34641639 34641888 + 0.833333 NA intron (NR_027620, intron 1 of 3) MER4D1|LTR|ERV1 -4110 NR_045208 100130342 Hs.679909 NR_045208 SCGB2B3P C2B|SCGB4A3P secretoglobin family 2B member 3, pseudogene pseudo 146.667-40 chr16 66742060 66742483 + 0.833333 NA intron (NM_001286157, intron 3 of 11) intron (NM_001286157, intron 3 of 11) 9338 NM_006141 1783 Hs.369068 NM_006141 ENSG00000135720 DYNC1LI2 DNCLI2|LIC2 dynein cytoplasmic 1 light intermediate chain 2 protein-coding 159.333-57 chr4 76329628 76330029 + 0.833333 NA intron (NM_001042784, intron 20 of 23) Charlie1b|DNA|hAT-Charlie 23802 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 266.667-12 chr20 22798426 22798892 + 0.833333 NA Intergenic L1ME1|LINE|L1 -113315 NR_146527 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 287-7 chr3 5627503 5628014 + 0.833333 NA Intergenic L1MC3|LINE|L1 -377503 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 203.833-24 chr8 67484775 67485295 + 0.833333 NA intron (NM_020361, intron 6 of 10) intron (NM_020361, intron 6 of 10) 141201 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 147.333-65 chr4 101141393 101141621 + 0.833333 NA intron (NM_001130691, intron 2 of 12) L2a|LINE|L2 99365 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 166.333-25 chr15 57445896 57446150 + 0.833333 NA intron (NM_032866, intron 4 of 18) intron (NM_032866, intron 4 of 18) 69518 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 183.667-67 chr6 39584481 39584886 + 0.833333 NA intron (NM_001289020, intron 9 of 21) MIR|SINE|MIR 140725 NM_001289021 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 153.833-53 chr5 81103222 81103463 + 0.833333 NA intron (NM_006909, intron 12 of 26) (TA)n|Simple_repeat|Simple_repeat -129978 NM_001825 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 134.167-21 chr12 102276227 102276520 + 0.833333 NA Intergenic L1ME3Cz|LINE|L1 -78540 NM_002674 5367 Hs.707990 NM_002674 ENSG00000183395 PMCH MCH|ppMCH pro-melanin concentrating hormone protein-coding 118.167-63 chr8 87133293 87133620 + 0.833333 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 267041 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 302.667-8 chr2 23079109 23079666 + 0.833333 NA Intergenic L1MEg1|LINE|L1 -305792 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 146.667-39 chr16 24559132 24559377 + 0.833333 NA intron (NM_018703, intron 7 of 16) intron (NM_018703, intron 7 of 16) 19667 NM_032626 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 280.667-25 chr8 105643024 105643464 + 0.833333 NA intron (NM_001362837, intron 5 of 7) L2|LINE|L2 323701 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 191.667-38 chr3 156486611 156486888 + 0.833333 NA intron (NM_172159, intron 8 of 13) intron (NM_172159, intron 8 of 13) -39813 NR_046618 100874084 Hs.131282 NR_046618 ENSG00000242370 KCNAB1-AS1 - KCNAB1 antisense RNA 1 ncRNA 184.667-10 chr11 82127528 82128037 + 0.833333 NA intron (NR_120571, intron 3 of 7) L1MEf|LINE|L1 -236946 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 145.667-28 chr14 50900121 50900353 + 0.833333 NA intron (NM_001206673, intron 9 of 12) AluJo|SINE|Alu 28077 NM_181533 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 152.167-20 chr15 60467302 60467666 + 0.833333 NA intron (NR_147171, intron 4 of 16) L1M5|LINE|L1 11658 NM_001018089 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 216.333-17 chr17 71473544 71473855 + 0.833333 NA Intergenic Intergenic -271520 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 205.167-23 chr2 31564327 31564660 + 0.833333 NA intron (NM_000348, intron 1 of 4) L1MEc|LINE|L1 16445 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 167.833-60 chr9 106652819 106653194 + 0.833333 NA intron (NR_104145, intron 3 of 6) AluSc8|SINE|Alu 36948 NR_104145 100996590 Hs.147110 NR_104145 ENSG00000234323 LINC01505 - long intergenic non-protein coding RNA 1505 ncRNA 171.5-8 chr11 114677958 114678319 + 0.833333 NA promoter-TSS (NM_182495) promoter-TSS (NM_182495) -389 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 115.5-10 chr1 218580604 218580819 + 0.833333 NA intron (NR_031644, intron 2 of 6) (CA)n|Simple_repeat|Simple_repeat 70616 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 232.167-24 chr6 6333673 6334123 + 0.833333 NA Intergenic MER89|LTR|ERV1 -13207 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 237.167-22 chr8 100916296 100916750 + 0.833333 NA TTS (NM_001135701) TTS (NM_001135701) 34048 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 114.667-46 chr2 22666900 22667132 + 0.833333 NA Intergenic L1MD|LINE|L1 130537 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 126.667-67 chr4 97730233 97730439 + 0.833333 NA intron (NM_174952, intron 9 of 10) L1PA16|LINE|L1 363410 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 124.833-77 chr5 170919281 170919540 + 0.833333 NA intron (NM_022897, intron 10 of 27) intron (NM_022897, intron 10 of 27) 57392 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 156.333-12 chr10 119822148 119822359 + 0.833333 NA intron (NM_014937, intron 16 of 19) intron (NM_014937, intron 16 of 19) 2996 NM_001243194 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 144.167-23 chr14 57256782 57257104 + 0.833333 NA intron (NM_006544, intron 1 of 17) LTR16A|LTR|ERVL 11962 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 182.333 chr1 18570446 18570945 + 0.833333 NA Intergenic AluJb|SINE|Alu -60151 NM_013945 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 168.667-72 chr7 8636047 8636437 + 0.833333 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 202633 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 235-24 chr3 173824721 173825292 + 0.833333 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) 95790 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 168.333-7 chr11 101935773 101936025 + 0.833333 NA intron (NM_001363543, intron 2 of 11) MER20|DNA|hAT-Charlie -19377 NM_178127 253935 Hs.318370 NM_178127 ENSG00000187151 ANGPTL5 - angiopoietin like 5 protein-coding 164.5-67 chrX 139814866 139815159 + 0.833333 NA intron (NM_001353812, intron 4 of 29) intron (NM_001353812, intron 4 of 29) 17229 NM_173694 286410 Hs.88252 NM_173694 ENSG00000101974 ATP11C ATPIG|ATPIQ|HACXL ATPase phospholipid transporting 11C protein-coding 128-36 chr17 17833831 17834161 + 0.833333 NA intron (NM_001005291, intron 1 of 19) intron (NM_001005291, intron 1 of 19) 2990 NM_001005291 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP1|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 126.167-93 chr9 11419770 11420065 + 0.833333 NA Intergenic L2c|LINE|L2 806711 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 122.833-69 chr5 17984119 17984380 + 0.833333 NA Intergenic Intergenic 176975 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 121-41 chr18 3530888 3531097 + 0.833333 NA intron (NM_001242762, intron 7 of 9) intron (NM_001242762, intron 7 of 9) -63122 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 241-4 chr1 171681278 171681660 + 0.833333 NA Intergenic AluSx|SINE|Alu -28781 NM_000261 4653 Hs.436037 NM_000261 ENSG00000034971 MYOC GLC1A|GPOA|JOAG|JOAG1|TIGR myocilin protein-coding 278.5 chr1 240547156 240547502 + 0.833333 NA intron (NM_022469, intron 1 of 1) AluSc8|SINE|Alu 64826 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 188.167-43 chr6 124057498 124057788 + 0.833333 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) -225362 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 120.667-118 chr8 120528616 120528835 + 0.833333 NA Intergenic L1MB7|LINE|L1 83306 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 165-56 chr7 109969341 109969637 + 0.833333 NA Intergenic L1MA6|LINE|L1 -9276 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 134.833-8 chr10 97932069 97932309 + 0.833333 NA intron (NM_001206528, intron 3 of 14) intron (NM_001206528, intron 3 of 14) -56292 NR_162124 113839520 NR_162124 MIR3085 - microRNA 3085 ncRNA 162.667-32 chr17 67989983 67990239 + 0.833333 NA TTS (NM_181655) TTS (NM_181655) 3495 NM_181656 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 173-31 chr2 146440356 146440615 + 0.833333 NA Intergenic Intergenic -146572 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 212.667-43 chr7 15613911 15614215 + 0.833333 NA intron (NM_005924, intron 2 of 2) L1ME3D|LINE|L1 -52048 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 320.667-3 chr14 76544296 76544858 + 0.833333 NA Intergenic MIR3|SINE|MIR 173230 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 124-20 chr11 62955155 62955407 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR 29686 NM_004790 9356 Hs.369252 NM_004790 ENSG00000197901 SLC22A6 HOAT1|OAT1|PAHT|ROAT1 solute carrier family 22 member 6 protein-coding 131.667-76 chr3 23195108 23195391 + 0.833333 NA non-coding (NR_136177, exon 2 of 2) non-coding (NR_136177, exon 2 of 2) 7329 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 247.333-28 chr8 127715861 127716245 + 0.833333 NA non-coding (NR_117102, exon 2 of 4) non-coding (NR_117102, exon 2 of 4) 17914 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 189-27 chr3 83028840 83029071 + 0.833333 NA Intergenic L1PA16|LINE|L1 1042813 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 166.5-8 chr11 9952455 9952882 + 0.833333 NA intron (NM_030962, intron 16 of 39) HAL1|LINE|L1 113526 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 191.833-29 chr5 146373014 146373399 + 0.833333 NA Intergenic Intergenic 34367 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 173.167-42 chr7 16471482 16471912 + 0.833333 NA Intergenic Intergenic -5959 NM_015464 25928 Hs.648106 NM_015464 ENSG00000171243 SOSTDC1 CDA019|DAND7|ECTODIN|USAG1 sclerostin domain containing 1 protein-coding 190.667-40 chr5 14811030 14811419 + 0.833333 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 14788 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 193.833-20 chr17 58873247 58873510 + 0.833333 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 117509 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 148.833-40 chr3 9649858 9650036 + 0.833333 NA intron (NM_001077525, intron 1 of 18) intron (NM_001077525, intron 1 of 18) 442 NM_001077525 64419 Hs.475382 NM_022485 ENSG00000163719 MTMR14 C3orf29 myotubularin related protein 14 protein-coding 157.333-71 chr8 75370911 75371142 + 0.833333 NA Intergenic Intergenic -36623 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 117.333-71 chr3 78009284 78009518 + 0.833333 NA Intergenic L2a|LINE|L2 39562 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 235-23 chr3 120408221 120408808 + 0.833333 NA intron (NM_007085, intron 6 of 10) intron (NM_007085, intron 6 of 10) -12785 NR_029584 406975 NR_029584 ENSG00000284121 MIR198 MIRN198|miR-198 microRNA 198 ncRNA 145.167-38 chr20 45219426 45219617 + 0.833333 NA Intergenic Intergenic -1852 NM_003008 6407 Hs.537218 NM_003008 ENSG00000124157 SEMG2 SGII semenogelin 2 protein-coding 181.833-50 chr8 56584537 56584824 + 0.833333 NA Intergenic Intergenic -24857 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 226.667-27 chr5 40940845 40941393 + 0.833333 NA intron (NM_000587, intron 6 of 17) AluSz|SINE|Alu 31622 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 237.833-6 chr2 45372850 45373359 + 0.833333 NA Intergenic L1MEg|LINE|L1 -118163 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 129.167-80 chr8 82760773 82760947 + 0.833333 NA Intergenic Intergenic -151244 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 136.167-76 chr8 85907803 85908064 + 0.833333 NA Intergenic Intergenic -79991 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 234.667-30 chr6 37408827 37409320 + 0.833333 NA Intergenic L1ME2|LINE|L1 -24148 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 123.667-61 chr20 24666639 24667042 + 0.833333 NA TTS (NM_001323606) TTS (NM_001323606) 196879 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 208.5-48 chr8 129120286 129120716 + 0.833333 NA Intergenic Intergenic 120739 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 120.167-86 chrX 120739870 120740038 + 0.833333 NA Intergenic Intergenic -109804 NM_152692 29071 Hs.643920 NM_152692 ENSG00000171155 C1GALT1C1 C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS C1GALT1 specific chaperone 1 protein-coding 208.833-26 chr5 22872866 22873254 + 0.833333 NA Intergenic Arthur1|DNA|hAT-Tip100 -19716 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 192.333-4 chr10 107003648 107004011 + 0.833333 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 160877 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 253.833-11 chr4 25248121 25248455 + 0.833333 NA intron (NM_018323, intron 1 of 9) intron (NM_018323, intron 1 of 9) 14255 NR_144633 55300 Hs.191701 NM_018323 ENSG00000038210 PI4K2B PI4KIIB|PIK42B phosphatidylinositol 4-kinase type 2 beta protein-coding 141.833-10 chr12 41074750 41075005 + 0.833333 NA Intergenic MIRb|SINE|MIR -113443 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 138-39 chr15 98829813 98830160 + 0.833333 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 45560 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 207.667-41 chr5 127895587 127896035 + 0.833333 NA intron (NM_001317938, intron 6 of 6) AluSz6|SINE|Alu 187364 NR_152800 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 123.333-18 chr10 67338934 67339177 + 0.833333 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 64355 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 144.334-6 chr5 169922380 169923007 + 0.833333 NA intron (NM_001346304, intron 1 of 3) MIR3|SINE|MIR 57802 NM_001129891 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 159.167-19 chr14 72694598 72694940 + 0.833333 NA intron (NM_001280544, intron 6 of 9) L1M5|LINE|L1 177949 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 155.167-34 chr4 43956900 43957204 + 0.833333 NA Intergenic Intergenic -59809 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 170.833-16 chr2 40459356 40459652 + 0.833333 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) -7414 NM_001351490 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 189-21 chr20 4960959 4961207 + 0.833333 NA intron (NM_005116, intron 2 of 16) intron (NM_005116, intron 2 of 16) 40427 NM_005116 9962 Hs.516866 NM_005116 ENSG00000089057 SLC23A2 NBTL1|SLC23A1|SVCT2|YSPL2 solute carrier family 23 member 2 protein-coding 123.667-44 chr18 55490166 55490400 + 0.833333 NA intron (NM_001348217, intron 2 of 18) (TATT)n|Simple_repeat|Simple_repeat 11062 NR_039754 100616290 NR_039754 ENSG00000264571 MIR4529 - microRNA 4529 ncRNA 147.167-46 chr4 45768332 45768704 + 0.833333 NA Intergenic L1M1|LINE|L1 355536 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 120-14 chr10 64747640 64747827 + 0.833333 NA Intergenic L1M1|LINE|L1 -77795 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 298.833-8 chr6 137550725 137551296 + 0.833333 NA Intergenic Intergenic -56616 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 235.667-24 chr8 88322391 88322830 + 0.833333 NA intron (NM_005941, intron 1 of 9) AluJo|SINE|Alu 4873 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 219.833-7 chr14 53444593 53444988 + 0.833333 NA Intergenic Intergenic 291436 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 173.167-2 chr1 162873197 162873689 + 0.833333 NA Intergenic Intergenic -4628 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 224.667-2 chr1 73613377 73613718 + 0.833333 NA Intergenic L1MA1|LINE|L1 -61132 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 132.667-37 chr15 39383443 39383620 + 0.833333 NA Intergenic Intergenic 132862 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 143.333-67 chr5 40045110 40045352 + 0.833333 NA Intergenic Intergenic -7060 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 304.333-4 chr13 93638900 93639417 + 0.833333 NA intron (NM_005708, intron 2 of 8) L2a|LINE|L2 219315 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 122.167-25 chr16 73822695 73823174 + 0.833333 NA Intergenic Intergenic 392587 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 185.5-25 chr20 6101038 6101340 + 0.833333 NA intron (NM_017671, intron 6 of 14) L1ME3G|LINE|L1 22355 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 389.833 chr20 28811499 28812435 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -209302 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 138.5-5 chr1 82092202 82092445 + 0.833333 NA Intergenic Intergenic 289870 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 202.833-24 chr6 64040321 64040605 + 0.833333 NA intron (NM_001292009, intron 33 of 43) intron (NM_001292009, intron 33 of 43) 233627 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 124.833-58 chr3 12624940 12625248 + 0.833333 NA intron (NR_148942, intron 1 of 16) AluSx|SINE|Alu 38414 NM_001354690 5894 Hs.159130 NM_002880 ENSG00000132155 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 147-11 chr11 82063217 82063566 + 0.833333 NA intron (NR_120571, intron 5 of 7) intron (NR_120571, intron 5 of 7) -172555 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 242.833-12 chr7 54995745 54996180 + 0.833333 NA Intergenic Intergenic -23055 NM_001346897 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 133-10 chr10 61022548 61022797 + 0.833333 NA intron (NR_108052, intron 1 of 1) intron (NR_108052, intron 1 of 1) 6397 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 159.333-30 chr17 70227269 70227531 + 0.833333 NA Intergenic Intergenic 57865 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 267.667-17 chr4 70674243 70674689 + 0.833333 NA Intergenic Intergenic -7958 NM_144646 3512 Hs.643431 NM_144646 ENSG00000132465 JCHAIN IGCJ|IGJ|JCH joining chain of multimeric IgA and IgM protein-coding 169.5-65 chr7 17945378 17945693 + 0.833333 NA Intergenic L1MC3|LINE|L1 -5027 NM_001350868 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 127.167-87 chr8 64885310 64885533 + 0.833333 NA Intergenic L1MEc|LINE|L1 -86684 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 208.833-31 chr7 23410519 23410813 + 0.833333 NA intron (NM_006547, intron 3 of 14) intron (NM_006547, intron 3 of 14) 14220 NR_145734 109616981 NR_145734 ENSG00000212264 SNORD65C - small nucleolar RNA, C/D box 65C snoRNA 120.833-33 chr2 119912965 119913137 + 0.833333 NA intron (NM_002830, intron 10 of 26) L1MB7|LINE|L1 -100026 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 162-39 chr2 231783922 231784333 + 0.833333 NA intron (NM_001282949, intron 1 of 5) intron (NM_001282949, intron 1 of 5) -2256 NM_001282952 64708 Hs.335061 NM_022730 ENSG00000144524 COPS7B CSN7B|SGN7b COP9 signalosome subunit 7B protein-coding 166.5-11 chr12 11742058 11742558 + 0.833333 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 92454 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 259.5-16 chr5 40017323 40017847 + 0.833333 NA Intergenic MLT1B-int|LTR|ERVL-MaLR -34706 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 249.667-8 chr11 15031454 15032013 + 0.833333 NA Intergenic Tigger2a|DNA|TcMar-Tigger -41860 NM_000728 797 Hs.534305 NM_000728 ENSG00000175868 CALCB CALC2|CGRP-II|CGRP2 calcitonin related polypeptide beta protein-coding 188.833-4 chr10 26174807 26175263 + 0.833333 NA intron (NM_017433, intron 30 of 34) intron (NM_017433, intron 30 of 34) -41272 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 217.833-4 chr12 106918810 106919173 + 0.833333 NA Intergenic Intergenic -36731 NM_001319663 90488 Hs.257664 NM_152261 ENSG00000151135 TMEM263 C12orf23 transmembrane protein 263 protein-coding 178.667-69 chr8 74568719 74568996 + 0.833333 NA Intergenic L2a|LINE|L2 -20248 NR_049871 100847091 NR_049871 ENSG00000283505 MIR5681B - microRNA 5681b ncRNA 183.5-60 chr8 143175054 143175411 + 0.833333 NA Intergenic LTR43-int|LTR|ERV1 -14578 NM_001130478 4062 Hs.159590 NM_002347 ENSG00000176956 LY6H NMLY6 lymphocyte antigen 6 family member H protein-coding 156.833-43 chr4 141557001 141557377 + 0.833333 NA Intergenic L1MA5|LINE|L1 -79394 NR_037840 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 178.667-58 chr6 67492763 67493165 + 0.833333 NA Intergenic L1MCc|LINE|L1 -562387 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 227-4 chr12 12977259 12977989 + 0.833333 NA intron (NM_015987, intron 3 of 3) intron (NM_015987, intron 3 of 3) -2213 NR_038920 100506314 Hs.127718 NR_038920 ENSG00000247498 GPRC5D-AS1 - GPRC5D and HEBP1 antisense RNA 1 ncRNA 126-75 chr5 81895128 81895349 + 0.833333 NA Intergenic Intergenic -76785 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 295.833-6 chr7 54009471 54010099 + 0.833333 NA Intergenic L1MA7|LINE|L1 -197854 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 259.667-25 chr7 3722910 3723553 + 0.833333 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -406454 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 170.333-77 chrX 19242364 19242647 + 0.833333 NA Intergenic Intergenic -101388 NM_001173456 5160 Hs.530331 NM_000284 ENSG00000131828 PDHA1 PDHA|PDHAD|PDHCE1A|PHE1A pyruvate dehydrogenase E1 alpha 1 subunit protein-coding 175.833-25 chr2 149385226 149385488 + 0.833333 NA intron (NM_194317, intron 1 of 4) intron (NM_194317, intron 1 of 4) 54770 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 149.333-54 chr2 142464226 142464661 + 0.833333 NA Intergenic Intergenic -332742 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 142-57 chr20 63634979 63635170 + 0.833333 NA Intergenic Intergenic 7839 NR_132417 100505771 Hs.448392 NR_132417 ENSG00000232442 MHENCR - melanoma highly expressed competing endogenous lncRNA for miR-425 and miR-489 ncRNA 203-40 chr6 109020251 109020500 + 0.833333 NA intron (NM_014454, intron 1 of 9) intron (NM_014454, intron 1 of 9) -10820 NM_001199933 27244 Hs.591336 NM_014454 ENSG00000080546 SESN1 PA26|SEST1 sestrin 1 protein-coding 153.333-77 chr7 46020634 46020937 + 0.833333 NA Intergenic L1MC3|LINE|L1 -99513 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 146.333-13 chr10 126124219 126124482 + 0.833333 NA intron (NM_001288974, intron 5 of 18) intron (NM_001288974, intron 5 of 18) -151077 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 127.833-39 chr2 67892144 67892490 + 0.833333 NA Intergenic Intergenic -66755 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 152.833-4 chr1 153360771 153361042 + 0.833333 NA 3' UTR (NM_002965, exon 3 of 3) 3' UTR (NM_002965, exon 3 of 3) 3052 NM_002965 6280 Hs.112405 NM_002965 ENSG00000163220 S100A9 60B8AG|CAGB|CFAG|CGLB|L1AG|LIAG|MAC387|MIF|MRP14|NIF|P14 S100 calcium binding protein A9 protein-coding 223.5-30 chr7 26061136 26061654 + 0.833333 NA Intergenic Intergenic -90803 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 148-45 chr2 183660450 183660809 + 0.833333 NA Intergenic L1MC5|LINE|L1 536186 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 199.667-52 chr5 149693795 149694308 + 0.833333 NA Intergenic Intergenic -36259 NM_133263 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 338.333-3 chr2 152773831 152774480 + 0.833333 NA Intergenic Intergenic 55518 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 137.833-21 chr2 150886243 150886485 + 0.833333 NA Intergenic Intergenic 257467 NR_110245 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 202.167-35 chr8 84408422 84408791 + 0.833333 NA intron (NM_001354319, intron 2 of 8) MLT1J1|LTR|ERVL-MaLR -6878 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 259.833-9 chr4 99545416 99545872 + 0.833333 NA Intergenic Intergenic 18079 NM_152292 93587 Hs.380412 NM_152292 ENSG00000145331 TRMT10A HEL-S-88|MSSGM|MSSGM1|RG9MTD2|TRM10 tRNA methyltransferase 10A protein-coding 214.667-23 chr3 46480248 46480537 + 0.833333 NA intron (NM_001321122, intron 1 of 19) intron (NM_001321122, intron 1 of 19) 4842 NM_001321122 4057 Hs.529517 NM_002343 ENSG00000012223 LTF GIG12|HEL110|HLF2|LF lactotransferrin protein-coding 143.167-44 chr21_GL383581v2_alt 70027 70420 + 0.833333 NA intron (NR_040016, intron 1 of 8).2 L1ME2|LINE|L1 13880 NM_006134 757 Hs.433668 NM_006134 ENSG00000142188 TMEM50B C21orf4|HCVP7TP3 transmembrane protein 50B protein-coding 191-8 chr12 85926253 85926696 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 52179 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 168.167-8 chr10 68470955 68471488 + 0.833333 NA intron (NM_001080449, intron 1 of 20) intron (NM_001080449, intron 1 of 20) 752 NM_001080449 1763 Hs.532446 NM_001080449 ENSG00000138346 DNA2 DNA2L|hDNA2 DNA replication helicase/nuclease 2 protein-coding 114.333-76 chr2 232225383 232225536 + 0.833333 NA intron (NR_046477, intron 9 of 18) L1ME3|LINE|L1 52806 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 227.667-2 chr1 62745167 62745697 + 0.833333 NA Intergenic Intergenic -38674 NM_178221 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 156.167-5 chr10 43888041 43888248 + 0.833333 NA intron (NR_038268, intron 4 of 4) intron (NR_038268, intron 4 of 4) -21152 NR_033846 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 144.667-52 chr2 82619828 82620040 + 0.833333 NA Intergenic LOR1-int|LTR|ERV1 -236869 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 124.167-77 chr5 153940606 153940783 + 0.833333 NA Intergenic MER4B|LTR|ERV1 -41707 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 138.833-5 chr1 159245739 159245966 + 0.833333 NA Intergenic L1MA7|LINE|L1 40977 NM_001122951 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding 154.833-45 chr4 93869434 93869782 + 0.833333 NA Intergenic Intergenic 40855 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 298.5-17 chr5 21738748 21739207 + 0.833333 NA Intergenic L1MC3|LINE|L1 -145477 NR_132787 106635539 NR_132787 SNORA105A - small nucleolar RNA, H/ACA box 105A snoRNA 284.833-2 chr16 59139865 59140541 + 0.833333 NA Intergenic L1PB4|LINE|L1 -405887 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 162.5-25 chr18 60057380 60057673 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR 157530 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 148.167-12 chr11 33905982 33906325 + 0.833333 NA Intergenic L2a|LINE|L2 -14077 NM_005574 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 LMO-2|RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 268.334-3 chr10 92824961 92825682 + 0.833333 NA Intergenic AluSq2|SINE|Alu -1510 NM_001013848 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 182-48 chr6 134565149 134565474 + 0.833333 NA Intergenic Intergenic -25306 NR_125856 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 239-7 chr15 27432194 27432805 + 0.833333 NA intron (NM_001270873, intron 5 of 5) MLT1D-int|LTR|ERVL-MaLR -271180 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 148.833-9 chr11 64244008 64244278 + 0.833333 NA TTS (NM_004470) TTS (NM_004470) -1723 NR_135087 105369340 Hs.697228 NR_135086 ENSG00000256940 PPP1R14B-AS1 - PPP1R14B antisense RNA 1 ncRNA 202.833-10 chr15 39182577 39182876 + 0.833333 NA Intergenic Intergenic -67943 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 131.667-29 chr13 58997043 58997295 + 0.833333 NA Intergenic Intergenic -764052 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 164.167-41 chr20 6829726 6830042 + 0.833333 NA Intergenic Intergenic 62198 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 257.333-31 chrX 47990197 47990810 + 0.833333 NA intron (NM_006962, intron 3 of 6) L1MC4|LINE|L1 13486 NM_006962 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 188.167-18 chr2 17222889 17223261 + 0.833333 NA Intergenic MIR3|SINE|MIR 295365 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 217.667-22 chr2 102424518 102424857 + 0.833333 NA intron (NM_003853, intron 5 of 11) intron (NM_003853, intron 5 of 11) 5897 NM_003853 8807 Hs.158315 NM_003853 ENSG00000115607 IL18RAP ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB interleukin 18 receptor accessory protein protein-coding 161.833-21 chr2 159861984 159862498 + 0.833333 NA intron (NM_002349, intron 14 of 34) AluY|SINE|Alu 42515 NM_001198760 100526664 Hs.153563 NM_001198759 ENSG00000248672 LY75-CD302 CD205|CLEC13B|DEC-205|LY75|Ly-75|gp200-MR6 LY75-CD302 readthrough protein-coding 154.667-57 chr6 54112223 54112534 + 0.833333 NA intron (NM_001281747, intron 1 of 13) intron (NM_001281747, intron 1 of 13) 935 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 118.167-31 chr2 32273632 32273876 + 0.833333 NA Intergenic L1MB8|LINE|L1 -4150 NM_032312 84272 Hs.468099 NM_032312 ENSG00000119820 YIPF4 FinGER4|Nbla11189 Yip1 domain family member 4 protein-coding 180.667-20 chr14 42770051 42770358 + 0.833333 NA Intergenic L1MEd|LINE|L1 1163348 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 141.5-46 chr2 96189915 96190192 + 0.833333 NA intron (NM_020151, intron 6 of 7) L1MC5|LINE|L1 -18363 NR_046322 285033 Hs.58648 NM_001037228 STARD7-AS1 - STARD7 antisense RNA 1 ncRNA 261-13 chr2 146226289 146226653 + 0.833333 NA Intergenic Intergenic -360586 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 263.667-20 chr8 103583641 103584109 + 0.833333 NA intron (NM_001348497, intron 1 of 22) L1MA1|LINE|L1 -81965 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 125.333-12 chr1 238715939 238716089 + 0.833333 NA Intergenic Intergenic -229997 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 145.333-4 chr1 101645595 101645830 + 0.833333 NA Intergenic Intergenic 201368 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 187.5-45 chr6 12235950 12236214 + 0.833333 NA Intergenic Intergenic -54279 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 213.333-37 chr5 161895116 161895641 + 0.833333 NA intron (NM_000806, intron 9 of 10) intron (NM_000806, intron 9 of 10) 44653 NM_001127648 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 199.5-16 chr18 9315409 9315759 + 0.833333 NA Intergenic L1ME1|LINE|L1 -19189 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 119.833-72 chr5 124250865 124251164 + 0.833333 NA intron (NR_125774, intron 4 of 5) L1MC|LINE|L1 187506 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 154.167-48 chr3 165939843 165940096 + 0.833333 NA Intergenic MIRb|SINE|MIR -102546 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 127.667-23 chr12 111867775 111868021 + 0.833333 NA intron (NM_003668, intron 4 of 13) L1MC5|LINE|L1 -24893 NR_015404 51275 Hs.333120 NR_015404 ENSG00000234608 MAPKAPK5-AS1 C12orf47 MAPKAPK5 antisense RNA 1 ncRNA 123.333-101 chr7 45984313 45984506 + 0.833333 NA Intergenic Intergenic -63137 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 130.667-42 chr2 157724874 157725064 + 0.833333 NA Intergenic L1MB2|LINE|L1 -96105 NM_145259 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 143.833-20 chr2 193076472 193076753 + 0.833333 NA Intergenic Intergenic 326767 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 150.667-2 chr1 26064712 26064944 + 0.833333 NA intron (NM_032588, intron 2 of 8) MIRb|SINE|MIR 2806 NM_032588 84676 Hs.279709 NM_032588 ENSG00000158022 TRIM63 IRF|MURF1|MURF2|RNF28|SMRZ tripartite motif containing 63 protein-coding 174.167-9 chr11 81138631 81138981 + 0.833333 NA Intergenic Intergenic -376003 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 159.167-13 chr11 63996020 63996466 + 0.833333 NA intron (NR_003089, intron 3 of 5) intron (NR_003089, intron 3 of 5) 10390 NM_017670 55611 Hs.473788 NM_017670 ENSG00000167770 OTUB1 HSPC263|OTB1|OTU1 OTU deubiquitinase, ubiquitin aldehyde binding 1 protein-coding 213-17 chr2 27939310 27939679 + 0.833333 NA intron (NM_199193, intron 4 of 13) intron (NM_199193, intron 4 of 13) -48380 NR_028308 100302650 Hs.729719 NR_028308 BABAM2-AS1 BRE-AS1 BABAM2 antisense RNA 1 ncRNA 124.833-46 chr2 132584842 132585101 + 0.833333 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 85234 NM_001321234 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 203.667-25 chr3 56142248 56142660 + 0.833333 NA intron (NR_132749, intron 5 of 17) L1ME3E|LINE|L1 -289860 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 159-61 chr6 41514299 41514593 + 0.833333 NA intron (NR_120347, intron 2 of 2) L2a|LINE|L2 12002 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 158.333-9 chr10 69164546 69164872 + 0.833333 NA intron (NM_001035260, intron 6 of 7) L1M5|LINE|L1 -15525 NM_003171 6832 Hs.106469 NM_003171 ENSG00000156502 SUPV3L1 SUV3 Suv3 like RNA helicase protein-coding 315.5 chr17 52334817 52335507 + 0.833333 NA Intergenic Intergenic -55360 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 175.167-35 chr3 94788250 94788568 + 0.833333 NA Intergenic Intergenic -149854 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 133.167-69 chr8 118488757 118488972 + 0.833333 NA intron (NM_001101676, intron 2 of 4) L1ME3|LINE|L1 -132137 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 193.5-5 chr10 94415605 94416108 + 0.833333 NA intron (NM_015188, intron 1 of 12) intron (NM_015188, intron 1 of 12) 13315 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 224.833-5 chr17 41455484 41455792 + 0.833333 NA Intergenic MIRb|SINE|MIR 11748 NM_002278 3882 Hs.41752 NM_002278 ENSG00000108759 KRT32 HA2|HKA2|KRTHA2|hHa2 keratin 32 protein-coding 125.667-101 chr5 156280960 156281143 + 0.833333 NA Intergenic Intergenic -45706 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 147.167-63 chr8 131445618 131446132 + 0.833333 NA Intergenic L1ME1|LINE|L1 -404966 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 159.167-4 chr10 18299946 18300536 + 0.833333 NA intron (NM_000724, intron 1 of 12) AluSq2|SINE|Alu 39519 NM_001330060 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 156.5-38 chr17 63254022 63254239 + 0.833333 NA intron (NM_025185, intron 7 of 25) L1MA4A|LINE|L1 186137 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 209-46 chrX 67640955 67641346 + 0.833333 NA intron (NM_001011645, intron 2 of 8) MIR|SINE|MIR 96527 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 289-16 chr7 123700257 123700798 + 0.833333 NA intron (NM_003941, intron 5 of 10) AluSc8|SINE|Alu 44661 NM_207163 442721 Hs.592260 NM_207163 ENSG00000170807 LMOD2 C-LMOD|CLMOD leiomodin 2 protein-coding 133-103 chr9 129056277 129056494 + 0.833333 NA intron (NR_138421, intron 7 of 16) MIRb|SINE|MIR 19451 NM_032809 84895 Hs.632693 NM_032809 ENSG00000148343 MIGA2 C9orf54|FAM73B mitoguardin 2 protein-coding 166.667-60 chr8 14033118 14033493 + 0.833333 NA Intergenic Intergenic 403615 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 275.833-5 chr4 34466508 34467027 + 0.833333 NA Intergenic Intergenic -197020 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 226.333-37 chr7 38736049 38736670 + 0.833333 NA intron (NM_014396, intron 25 of 28) MER5A|DNA|hAT-Charlie -49270 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 202.5-19 chr4 38665865 38666245 + 0.833333 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -1427 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 308.333-10 chr8 125748015 125748567 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 202906 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 265.333-9 chr16 50872670 50873029 + 0.833333 NA Intergenic L1MB5|LINE|L1 -5924 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 165.833-31 chr2 46978304 46978699 + 0.833333 NA intron (NM_001288951, intron 4 of 20) FLAM_C|SINE|Alu -36646 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 347-8 chr8 103301199 103301966 + 0.833333 NA intron (NM_001317796, intron 2 of 5) FLAM_C|SINE|Alu 2684 NM_001164616 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 146.833-36 chr20 59755782 59755975 + 0.833333 NA intron (NM_183246, intron 4 of 11) intron (NM_183246, intron 4 of 11) 34668 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 207.5-19 chr2 170376094 170376481 + 0.833333 NA intron (NM_001083615, intron 9 of 33) intron (NM_001083615, intron 9 of 33) -25344 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 170.333-24 chr14 48870360 48870695 + 0.833333 NA Intergenic Intergenic 715853 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 136.5-61 chr22 23161077 23161631 + 0.833333 NA intron (NM_001349878, intron 10 of 10) intron (NM_001349878, intron 10 of 10) 15877 NR_146295 9609 Hs.353024 NM_004914 ENSG00000100228 RAB36 - RAB36, member RAS oncogene family protein-coding 134.667-31 chr14 88611566 88611850 + 0.833333 NA TTS (NM_183387) TTS (NM_183387) 17288 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 193.5-27 chr2 67726087 67726451 + 0.833333 NA Intergenic Intergenic 99293 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 344-7 chrX 114453761 114454471 + 0.833333 NA Intergenic Intergenic -129962 NM_000868 3358 Hs.149037 NM_000868 ENSG00000147246 HTR2C 5-HT1C|5-HT2C|5-HTR2C|5HTR2C|HTR1C 5-hydroxytryptamine receptor 2C protein-coding 190.167-31 chr21 40478546 40478870 + 0.833333 NA intron (NR_073202, intron 3 of 32) intron (NR_073202, intron 3 of 32) 95624 NR_038899 100506492 Hs.667053 NR_038896 ENSG00000235123 DSCAM-AS1 M41 DSCAM antisense RNA 1 ncRNA 234-14 chr16 35418468 35419050 + 0.833333 NA Intergenic L1MA9|LINE|L1 55228 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 252.333-11 chr13 31455168 31455600 + 0.833333 NA Intergenic Intergenic 255409 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 118-115 chr8 22618758 22618925 + 0.833333 NA non-coding (NR_033902, exon 19 of 21) non-coding (NR_033902, exon 19 of 21) 13799 NM_021174 57805 Hs.744848 NM_021174 ENSG00000158941 CCAR2 DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC cell cycle and apoptosis regulator 2 protein-coding 274.5-10 chr3 112921112 112921613 + 0.833333 NA 3' UTR (NM_170780, exon 7 of 7) 3' UTR (NM_170780, exon 7 of 7) 53741 NM_138939 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 138.833-54 chr3 87853084 87853341 + 0.833333 NA intron (NM_001322210, intron 2 of 2) L1PA13|LINE|L1 60506 NM_001322209 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 229.167-14 chr15 71558467 71558898 + 0.833333 NA intron (NM_001286429, intron 1 of 11) AluJr|SINE|Alu 11446 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 148.5-24 chr15 70310141 70310587 + 0.833333 NA Intergenic Intergenic 195564 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 248.333-15 chr9 26036183 26036573 + 0.833333 NA Intergenic MSTC|LTR|ERVL-MaLR -30297 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 151.667-9 chr10 49745678 49745993 + 0.833333 NA exon (NM_001347821, exon 11 of 23) exon (NM_001347821, exon 11 of 23) 16164 NM_001347819 55753 Hs.17860 NM_018245 ENSG00000197444 OGDHL - oxoglutarate dehydrogenase like protein-coding 197.333-53 chr7 30703833 30704149 + 0.833333 NA Intergenic Intergenic -3888 NM_001202475 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 121-35 chr17 12191999 12192202 + 0.833333 NA Intergenic L1M5|LINE|L1 110201 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 256.333-19 chr3 182864295 182864871 + 0.833333 NA intron (NM_014616, intron 12 of 29) L1M4|LINE|L1 71079 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 168.167-33 chr20 44790534 44790890 + 0.833333 NA intron (NM_001205317, intron 1 of 5) intron (NM_001205317, intron 1 of 5) 19834 NM_001205317 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 229.5-14 chr2 73240715 73241252 + 0.833333 NA intron (NM_001166285, intron 4 of 12) FLAM_A|SINE|Alu 6675 NM_006429 10574 Hs.368149 NM_006429 ENSG00000135624 CCT7 CCTETA|CCTH|NIP7-1|TCP1ETA chaperonin containing TCP1 subunit 7 protein-coding 141.167-54 chr4 57831321 57831790 + 0.833333 NA Intergenic Intergenic 405683 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 217.333-31 chr5 79961734 79962097 + 0.833333 NA intron (NR_131226, intron 2 of 2) intron (NR_131226, intron 2 of 2) 25336 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 218.833-28 chr8 129840025 129840550 + 0.833333 NA 3' UTR (NM_001353253, exon 14 of 14) 3' UTR (NM_001353253, exon 14 of 14) -53663 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 243.667-32 chr5 151870204 151870518 + 0.833333 NA intron (NM_000171, intron 3 of 8) MamRep605|LTR?|LTR? 54490 NM_000171 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 133-31 chr14 54475833 54476021 + 0.833333 NA 3' UTR (NM_004124, exon 7 of 7) 3' UTR (NM_004124, exon 7 of 7) 13053 NM_004124 2764 Hs.151413 NM_004124 ENSG00000197045 GMFB GMF glia maturation factor beta protein-coding 187.167-34 chr5 156647504 156648097 + 0.833333 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -202495 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 194-43 chr4 177299041 177299420 + 0.833333 NA Intergenic Intergenic -10644 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 143.333-81 chr7 18308235 18308432 + 0.833333 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 18241 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 266.167-7 chr12 30706982 30707469 + 0.833333 NA Intergenic Intergenic -11356 NM_006390 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 243.667-31 chr5 61449205 61449561 + 0.833333 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 117125 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 244.333-29 chr7 67991364 67991720 + 0.833333 NA Intergenic Intergenic -28711 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 273.5-10 chr16 35755682 35756166 + 0.833333 NA non-coding (NR_033985, exon 3 of 3) non-coding (NR_033985, exon 3 of 3) 9372 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 233-21 chr7 114008505 114008847 + 0.833333 NA Intergenic MLT1G3|LTR|ERVL-MaLR -77651 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 155.833-69 chr9 27704877 27705378 + 0.833333 NA Intergenic Intergenic -131261 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 129.5-47 chr2 125578672 125579118 + 0.833333 NA Intergenic Intergenic 539090 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 206.833-23 chr5 31599118 31599468 + 0.833333 NA Intergenic ERV24_Prim-int|LTR|ERV1 -39838 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 164-19 chr16 65054423 65054627 + 0.833333 NA intron (NM_001330576, intron 1 of 11) intron (NM_001330576, intron 1 of 11) 67538 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 334.333-2 chr10 110996319 110997053 + 0.833333 NA intron (NM_007373, intron 3 of 8) intron (NM_007373, intron 3 of 8) 7760 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 153.167-10 chr11 43762491 43762734 + 0.833333 NA intron (NM_016142, intron 3 of 10) LTR37-int|LTR|ERV1 81874 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 181.5-32 chr2 172376354 172376751 + 0.833333 NA Intergenic Intergenic -50784 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 178-25 chr2 232629826 232630158 + 0.833333 NA intron (NM_001243252, intron 1 of 3) AluSz|SINE|Alu -3612 NM_025202 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 273.5-7 chr12 117411774 117412226 + 0.833333 NA Intergenic MER97a|DNA|hAT-Tip100 -50198 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 226.333-35 chr5 172245604 172246013 + 0.833333 NA intron (NM_152277, intron 1 of 2) L1MEf|LINE|L1 37956 NM_152277 92181 Hs.131570 NM_152277 ENSG00000168246 UBTD2 DCUBP ubiquitin domain containing 2 protein-coding 139.667-63 chr3 87410667 87410900 + 0.833333 NA Intergenic L1M5|LINE|L1 -134199 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 157.667-22 chr14 45689356 45689620 + 0.833333 NA Intergenic L1MA4|LINE|L1 26114 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 151.667-10 chr10 79945486 79945767 + 0.833333 NA intron (NM_003019, intron 2 of 7) intron (NM_003019, intron 2 of 7) 3479 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 168.333-49 chr7 55381359 55381753 + 0.833333 NA intron (NM_018697, intron 1 of 8) L1MEf|LINE|L1 16108 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 139.5-60 chr6 99343715 99344047 + 0.833333 NA intron (NM_001346530, intron 1 of 5) intron (NM_001346530, intron 1 of 5) 5793 NM_032511 84553 Hs.573245 NM_032511 ENSG00000146267 FAXC C6orf168|dJ273F20 failed axon connections homolog, metaxin like GST domain containing protein-coding 171-23 chr2 128129910 128130146 + 0.833333 NA intron (NR_027671, intron 13 of 40) AluSx|SINE|Alu 38828 NM_020120 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 149.833-48 chr7 23769708 23770121 + 0.833333 NA intron (NM_031414, intron 13 of 23) intron (NM_031414, intron 13 of 23) 59695 NM_001260505 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 210.333-40 chr7 83410473 83410824 + 0.833333 NA intron (NM_001178129, intron 5 of 16) intron (NM_001178129, intron 5 of 16) 230783 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 141-29 chr14 78943674 78944155 + 0.833333 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -256068 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 245.333-2 chr1 190506716 190507291 + 0.833333 NA Intergenic Intergenic 28452 NR_110717 101929120 Hs.602301 NR_110716 LINC01351 - long intergenic non-protein coding RNA 1351 ncRNA 144.667-103 chrX 10482877 10483129 + 0.833333 NA intron (NM_000381, intron 4 of 9) intron (NM_000381, intron 4 of 9) 84600 NM_001193281 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 186.833-17 chr17 29037322 29037568 + 0.833333 NA Intergenic Intergenic -5696 NM_016518 51268 Hs.462585 NM_016518 ENSG00000179761 PIPOX LPIPOX pipecolic acid and sarcosine oxidase protein-coding 119.5-78 chr5 61487660 61487866 + 0.833333 NA intron (NM_020928, intron 2 of 13) L1PB4|LINE|L1 -149997 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 167.167-39 chr20 39199581 39199971 + 0.833333 NA Intergenic L2c|LINE|L2 24972 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 189.667-9 chr11 125838826 125839244 + 0.833333 NA 3' UTR (NM_001144874, exon 3 of 3) 3' UTR (NM_001144874, exon 3 of 3) 5719 NM_001144874 399968 Hs.436215 NM_001144874 ENSG00000237353 PATE4 PATE-B prostate and testis expressed 4 protein-coding 183.333-16 chr12 63425704 63426076 + 0.833333 NA Intergenic Intergenic 242603 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 139.333-95 chr9 93282251 93282512 + 0.833333 NA intron (NM_001282394, intron 19 of 29) L1MB1|LINE|L1 63922 NM_001368813 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 229.333-23 chr3 26524761 26525132 + 0.833333 NA Intergenic Intergenic -97860 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 148.333-3 chr1 52720424 52720757 + 0.833333 NA Intergenic AluSq4|SINE|Alu -5863 NM_024646 79699 Hs.476280 NM_024646 ENSG00000162378 ZYG11B ZYG11 zyg-11 family member B, cell cycle regulator protein-coding 132-64 chr4 132599307 132599489 + 0.833333 NA intron (NR_126401, intron 1 of 3) BLACKJACK|DNA|hAT-Blackjack 8309 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 224.333-2 chr1 224131363 224131858 + 0.833333 NA intron (NR_049764, intron 2 of 3) L1MB7|LINE|L1 17499 NM_015176 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 194.667-6 chr1 178979897 178980327 + 0.833333 NA Intergenic L1MA4|LINE|L1 -45692 NM_001324310 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B glycosaminoglycan xylosylkinase protein-coding 121-6 chr10 20794771 20795132 + 0.833333 NA intron (NM_001173484, intron 5 of 6) MIRb|SINE|MIR 102651 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 175-20 chr14 67493292 67493569 + 0.833333 NA intron (NM_001348546, intron 1 of 2) LTR10G|LTR|ERV1 -4709 NM_001348541 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 122.167-19 chr13 57651304 57651732 + 0.833333 NA intron (NM_001040429, intron 1 of 3) AluJr|SINE|Alu 19774 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 128.5-82 chr8 84267716 84267946 + 0.833333 NA intron (NM_001354320, intron 2 of 9) (TGT)n|Simple_repeat|Simple_repeat 83165 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 172.833-6 chr11 77264451 77264819 + 0.833333 NA intron (NM_182833, intron 10 of 16) L2|LINE|L2 37031 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 233.167-20 chr2 58000621 58001077 + 0.833333 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) -45793 NM_001288836 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 199.333-16 chr16 52632478 52632783 + 0.833333 NA Intergenic L2a|LINE|L2 -25655 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 135.667-19 chr10 100912057 100912324 + 0.833333 NA promoter-TSS (NM_001136123) promoter-TSS (NM_001136123) -773 NM_018121 55719 Hs.447458 NM_018121 ENSG00000119906 SLF2 C10orf6|FAM178A SMC5-SMC6 complex localization factor 2 protein-coding 121.833-77 chr9 96847056 96847293 + 0.833333 NA intron (NM_001346993, intron 1 of 3) L1PB3|LINE|L1 7340 NM_001346995 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 130.667-44 chr21 29126642 29126859 + 0.833333 NA intron (NM_001371376, intron 1 of 3) AluSq2|SINE|Alu -3894 NM_001371373 191.333-16 chr2 73876683 73877117 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -16108 NM_001199893 72 Hs.516105 NM_001615 ENSG00000163017 ACTG2 ACT|ACTA3|ACTE|ACTL3|ACTSG|VSCM actin gamma 2, smooth muscle protein-coding 190.667-56 chr8 29176627 29176943 + 0.833333 NA intron (NM_015254, intron 9 of 39) MER20|DNA|hAT-Charlie 86285 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 146.167-68 chr7 45328968 45329344 + 0.833333 NA Intergenic Intergenic 171365 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 247.167-21 chr8 100710557 100710985 + 0.833333 NA intron (NM_002568, intron 7 of 14) AluSx1|SINE|Alu -7747 NR_106992 102466854 NR_106992 ENSG00000284570 MIR7705 hsa-mir-7705 microRNA 7705 ncRNA 219.667-12 chr18 3222276 3222613 + 0.833333 NA Intergenic Intergenic -2336 NM_003803 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 194-35 chr22 28044432 28044878 + 0.833333 NA intron (NM_001145418, intron 12 of 22) L1PA4|LINE|L1 -124043 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 173.833-5 chr1 155685590 155686008 + 0.833333 NA intron (NM_001198901, intron 1 of 9) Charlie4z|DNA|hAT-Charlie 2857 NM_001198903 55249 Hs.584927 NM_018253 ENSG00000163374 YY1AP1 GRNG|HCCA1|HCCA2|YY1AP YY1 associated protein 1 protein-coding 197.167-6 chr1 222399145 222399788 + 0.833333 NA Intergenic Intergenic 148638 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 116-9 chr10 52544925 52545160 + 0.833333 NA Intergenic Intergenic -74509 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 325.333-6 chr4 14310505 14311146 + 0.833333 NA Intergenic Intergenic 198857 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 258.833-9 chr16 75487164 75487703 + 0.833333 NA intron (NR_163481, intron 1 of 2) AluSx1|SINE|Alu 8008 NM_021615 4166 Hs.655622 NM_021615 ENSG00000183196 CHST6 C-GlcNAc6ST|GST4-beta|MCDC1|glcNAc6ST-5|gn6st-5|hCGn6ST carbohydrate sulfotransferase 6 protein-coding 235.167-7 chr15 68119683 68120089 + 0.833333 NA intron (NM_016166, intron 2 of 13) L1MEc|LINE|L1 65310 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 166-54 chr6 127573687 127573964 + 0.833333 NA Intergenic Intergenic -3349 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 139.667-32 chr16 9036061 9036474 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -55377 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 153-35 chr3 19402127 19402480 + 0.833333 NA intron (NM_144633, intron 7 of 15) intron (NM_144633, intron 7 of 15) -87372 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 181.333-13 chr12 126681657 126682204 + 0.833333 NA intron (NR_110034, intron 1 of 2) L2b|LINE|L2 8388 NR_110035 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 127.167-20 chr11 47731572 47731988 + 0.833333 NA intron (NM_001318339, intron 11 of 16) intron (NM_001318339, intron 11 of 16) -16411 NM_024783 79841 Hs.147377 NM_024783 ENSG00000165923 AGBL2 CCP2 ATP/GTP binding protein like 2 protein-coding 258.333-17 chr17 9747583 9748200 + 0.833333 NA Intergenic L1MEi|LINE|L1 43701 NM_001220493 201140 Hs.61684 NM_001105571 ENSG00000184544 DHRS7C SDR32C2 dehydrogenase/reductase 7C protein-coding 145.5-31 chr2 11970241 11970521 + 0.833333 NA Intergenic L1MA4A|LINE|L1 -36735 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 300.333-15 chr5 86860522 86860984 + 0.833333 NA Intergenic L1MC5a|LINE|L1 113935 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 157.667-2 chr1 27745270 27745620 + 0.833333 NA intron (NM_001143914, intron 5 of 7) intron (NM_001143914, intron 5 of 7) 19484 NM_001143913 199870 Hs.469359 NM_152660 ENSG00000009780 FAM76A - family with sequence similarity 76 member A protein-coding 206-26 chr4 52096466 52096894 + 0.833333 NA non-coding (NR_123728, exon 13 of 13) non-coding (NR_123728, exon 13 of 13) 45376 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 158-62 chr9 79043331 79043636 + 0.833333 NA Intergenic Intergenic 102183 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 251.166-3 chr3 189108111 189108726 + 0.833333 NA Intergenic Intergenic -63553 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 169.667-74 chr8 109295180 109295592 + 0.833333 NA intron (NM_032869, intron 3 of 9) intron (NM_032869, intron 3 of 9) 34547 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 153.833-17 chr12 87786633 87786874 + 0.833333 NA intron (NR_149056, intron 2 of 3) L1MEi|LINE|L1 -2042 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 198.667-27 chr19 31265965 31266427 + 0.833333 NA intron (NR_138036, intron 1 of 4) Charlie4z|DNA|hAT-Charlie 83240 NR_138035 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 230.833-20 chr5 155216100 155216584 + 0.833333 NA Intergenic Intergenic 202587 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 245.167-6 chr22 25019800 25020166 + 0.833333 NA Intergenic Intergenic -7991 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 258.833-5 chr12 77938554 77939024 + 0.833333 NA intron (NM_001024383, intron 1 of 39) L1ME3Cz|LINE|L1 107895 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 141.333-2 chr1 77174571 77174922 + 0.833333 NA intron (NM_005482, intron 3 of 10) MER57-int|LTR|ERV1 44684 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 176.167-25 chr21 25230888 25231254 + 0.833333 NA Intergenic L1M5|LINE|L1 200630 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 174-39 chr3 140627031 140627469 + 0.833333 NA Intergenic AluY|SINE|Alu -50814 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 198.167 chr1 200493119 200493561 + 0.833333 NA Intergenic Intergenic -83304 NM_012482 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 124.5-4 chr1 186679767 186679937 + 0.833333 NA promoter-TSS (NR_125801) promoter-TSS (NR_125801) 571 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 185-31 chr20 35352080 35352327 + 0.833333 NA intron (NM_001184977, intron 4 of 7) intron (NM_001184977, intron 4 of 7) 59770 NM_018244 55245 Hs.726290 NM_018244 ENSG00000101019 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 263.167-16 chr8 130607659 130607983 + 0.833333 NA Intergenic Intergenic -164147 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 131.833-12 chr12 43615443 43615628 + 0.833333 NA Intergenic L1MA1|LINE|L1 -63332 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 159.833-36 chr4 86882377 86882722 + 0.833333 NA intron (NM_144645, intron 4 of 4) LTR51|LTR|ERV1 9873 NM_001369888 132989 Hs.339646 NM_144645 ENSG00000163633 C4orf36 - chromosome 4 open reading frame 36 protein-coding 164.833-33 chr3 153326109 153326457 + 0.833333 NA Intergenic L1PA15|LINE|L1 -158212 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 172.333-6 chr1 209907838 209908094 + 0.833333 NA Intergenic L1M4b|LINE|L1 -30208 NM_001256006 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 185-16 chr14 54554471 54554839 + 0.833333 NA Intergenic Intergenic -12957 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 178.667-45 chr4 55934123 55934377 + 0.833333 NA Intergenic L1MA3|LINE|L1 -14695 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 186.833-39 chr6 167863875 167864201 + 0.833333 NA intron (NM_001291964, intron 1 of 32) intron (NM_001291964, intron 1 of 32) 36403 NM_001291964 4301 Hs.614974 NM_005936 ENSG00000130396 AFDN AF6|MLL-AF6|MLLT4|l-afadin afadin, adherens junction formation factor protein-coding 277.833-3 chr2 151674833 151675425 + 0.833333 NA intron (NM_001271208, intron 35 of 182) L3|LINE|CR1 59347 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 134-58 chr2 31668456 31668736 + 0.833333 NA Intergenic Intergenic -87658 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 173-5 chr1 184955798 184956153 + 0.833333 NA intron (NM_052966, intron 1 of 13) MLT1J2|LTR|ERVL-MaLR 18533 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 136-62 chr5 28668567 28668785 + 0.833333 NA Intergenic LTR38-int|LTR|ERV1 -258194 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 151.667-81 chr7 75667103 75667502 + 0.833333 NA intron (NM_005338, intron 1 of 30) MIRc|SINE|MIR 71639 NM_001243198 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 124.667-93 chr5 39228304 39228525 + 0.833333 NA intron (NM_001243093, intron 1 of 18) intron (NM_001243093, intron 1 of 18) -8851 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 135.167-32 chr14 92636464 92636744 + 0.833333 NA intron (NM_024832, intron 4 of 9) AluSx|SINE|Alu 60370 NM_001319987 79890 Hs.326822 NM_024832 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 187.333-83 chr9 110014107 110014357 + 0.833333 NA intron (NM_147150, intron 6 of 9) intron (NM_147150, intron 6 of 9) -34366 NM_001004065 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 149.333-81 chr6 65090719 65091192 + 0.833333 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -210463 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 117-5 chr1 108990958 108991159 + 0.833333 NA intron (NM_014969, intron 9 of 14) FAM|SINE|Alu -27559 NM_001048210 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 218.5-23 chr3 195431623 195432063 + 0.833333 NA intron (NM_012287, intron 1 of 22) L1MB7|LINE|L1 11177 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 234.667-11 chr12 62220058 62220574 + 0.833333 NA Intergenic Intergenic -27477 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 121.5-7 chr1 201965318 201965603 + 0.833333 NA exon (NM_006335, exon 5 of 6) exon (NM_006335, exon 5 of 6) 9957 NM_006335 10440 Hs.20716 NM_006335 ENSG00000134375 TIMM17A TIM17|TIM17A translocase of inner mitochondrial membrane 17A protein-coding 214.833-4 chr11 96085274 96085612 + 0.833333 NA intron (NM_032427, intron 2 of 4) intron (NM_032427, intron 2 of 4) -161236 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 251.833-10 chr7 54050341 54050906 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR -238692 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 243.333-17 chr4 30945155 30945518 + 0.833333 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) 224967 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 116.333-28 chr12 19602172 19602400 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 161687 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 153.5-75 chr8 67027084 67027388 + 0.833333 NA intron (NM_001364910, intron 1 of 7) MER34|LTR|ERV1 1315 NM_001348563 286187 Hs.583933 NM_001013626 ENSG00000178125 PPP1R42 LRRC67|TLLR|TLRR|dtr protein phosphatase 1 regulatory subunit 42 protein-coding 188.167-35 chr4 103580005 103580500 + 0.833333 NA Intergenic Intergenic 139733 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 277.833-5 chr2 207448021 207448535 + 0.833333 NA Intergenic Intergenic -81684 NR_163947 135-24 chr14 53763644 53763814 + 0.833333 NA Intergenic L1ME1|LINE|L1 184755 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 207.333-24 chr2 53862579 53862960 + 0.833333 NA Intergenic Intergenic -2736 NM_001164165 100302652 Hs.40763 NM_001164165 ENSG00000270898 GPR75-ASB3 ASB-3|ASB3 GPR75-ASB3 readthrough protein-coding 190-12 chr11 96763101 96763541 + 0.833333 NA Intergenic Intergenic 254896 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 144-77 chr8 134448353 134448593 + 0.833333 NA Intergenic LTR16A1|LTR|ERVL -149598 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 161.667-31 chr14 68435296 68435561 + 0.833333 NA intron (NM_133509, intron 9 of 10) L1PA16|LINE|L1 193359 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 167.167-44 chr4 55482387 55482685 + 0.833333 NA intron (NM_004898, intron 4 of 22) intron (NM_004898, intron 4 of 22) 63396 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 144.833-31 chr2 54721989 54722188 + 0.833333 NA Intergenic AluSx|SINE|Alu -2924 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 237.333-26 chr3 61377644 61378308 + 0.833333 NA Intergenic L1MD3|LINE|L1 -126515 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 170.167-23 chr16 17942489 17942901 + 0.833333 NA Intergenic Intergenic 389967 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 132-89 chr7 49948609 49948791 + 0.833333 NA intron (NM_001159878, intron 7 of 7) L1M3|LINE|L1 144546 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 164.833-42 chr6 49355651 49355960 + 0.833333 NA Intergenic Intergenic 107448 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 165.5-66 chr9 131957948 131958322 + 0.833333 NA intron (NM_001253881, intron 3 of 6) L1ME2|LINE|L1 121732 NM_004269 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 123.5-32 chr16 47857363 47857671 + 0.833333 NA intron (NR_110649, intron 1 of 1) (TA)n|Simple_repeat|Simple_repeat -1064 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 129-72 chr5 91823609 91823854 + 0.833333 NA Intergenic Intergenic -440414 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 148.333-58 chr21 28775061 28775349 + 0.833333 NA Intergenic Intergenic 110162 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 185.667-14 chr13 108572125 108572507 + 0.833333 NA Intergenic Intergenic -23589 NM_015011 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 205 chr1 102905426 102905755 + 0.833333 NA intron (NM_001854, intron 54 of 66) intron (NM_001854, intron 54 of 66) 202906 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 161.833-3 chr1 85058817 85059218 + 0.833333 NA Intergenic Intergenic -3281 NM_001288563 126820 Hs.97933 NM_145172 ENSG00000162643 WDR63 DIC3|NYD-SP29 WD repeat domain 63 protein-coding 114.333-99 chr5 938825 939070 + 0.833333 NA Intergenic Intergenic 46063 NM_004237 9319 Hs.436187 NM_004237 ENSG00000071539 TRIP13 16E1BP|MVA3 thyroid hormone receptor interactor 13 protein-coding 167.333-10 chr10 58934940 58935172 + 0.833333 NA Intergenic Intergenic -64462 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 175.667-13 chr11 16453369 16453627 + 0.833333 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) 22890 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 135.5-74 chr8 80025190 80025441 + 0.833333 NA intron (NM_014018, intron 1 of 2) intron (NM_014018, intron 1 of 2) 4944 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 297.5-13 chr7 97097274 97097955 + 0.833333 NA Intergenic AluSz|SINE|Alu -18979 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 206.833-16 chr3 71309291 71309587 + 0.833333 NA intron (NM_001349340, intron 3 of 19) intron (NM_001349340, intron 3 of 19) -4668 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 167.5-52 chr5 162155473 162155725 + 0.833333 NA TTS (NM_000816) TTS (NM_000816) 87957 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 166.5-27 chr17 64117856 64118243 + 0.833333 NA intron (NM_001433, intron 1 of 21) intron (NM_001433, intron 1 of 21) 12095 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 137.833-41 chr5 145943979 145944233 + 0.833333 NA intron (NM_152550, intron 2 of 9) Tigger4a|DNA|TcMar-Tigger 7528 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 214.167-21 chr3 130291423 130291783 + 0.833333 NA Intergenic L1MB8|LINE|L1 -53913 NR_022012 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 161.667-37 chr18 1694075 1694358 + 0.833333 NA Intergenic L1MC3|LINE|L1 -334587 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 178.5-49 chr22 26622719 26623015 + 0.833333 NA intron (NM_001886, intron 2 of 5) intron (NM_001886, intron 2 of 5) 904 NM_001886 1413 Hs.57690 NM_001886 ENSG00000196431 CRYBA4 CTRCT23|CYRBA4|MCOPCT4 crystallin beta A4 protein-coding 140.333-82 chr7 90077518 90077781 + 0.833333 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -41751 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 191-50 chr8 28988884 28989209 + 0.833333 NA intron (NM_001324384, intron 4 of 10) AluSp|SINE|Alu 97732 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 143.833-40 chr5 95294888 95295091 + 0.833333 NA Intergenic LTR81B|LTR|Gypsy -10414 NM_024717 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 219 chr1 231880730 231881159 + 0.833333 NA intron (NM_001164541, intron 9 of 9) LTR26|LTR|ERV1 -44890 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 164.167-13 chr11 96403530 96403877 + 0.833333 NA Intergenic L1MB7|LINE|L1 13690 NM_003772 8690 Hs.105940 NM_003772 ENSG00000183340 JRKL HHMJG JRK like protein-coding 248-16 chr4 46129638 46130183 + 0.833333 NA Intergenic L2b|LINE|L2 -5856 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 175.667-65 chr7 113044399 113044710 + 0.833333 NA Intergenic Intergenic 41784 NM_001146266 54329 Hs.152009 NM_018970 ENSG00000164604 GPR85 SREB|SREB2 G protein-coupled receptor 85 protein-coding 145.5-50 chr4 30897347 30897673 + 0.833333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 177141 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 201.167-5 chr12 60947394 60947749 + 0.833333 NA Intergenic Intergenic 1245268 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 226.167-12 chr2 29152578 29152902 + 0.833333 NA exon (NM_001287527, exon 9 of 16) exon (NM_001287527, exon 9 of 16) 37325 NM_024692 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 227.167 chr1 107779583 107780035 + 0.833333 NA intron (NM_006113, intron 2 of 26) intron (NM_006113, intron 2 of 26) -91310 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 206.667-6 chr1 232193753 232194212 + 0.833333 NA Intergenic Intergenic 268148 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 195.833-21 chr3 70943684 70944024 + 0.833333 NA Intergenic Intergenic 121070 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 174.333-21 chr15 97244835 97245134 + 0.833333 NA Intergenic L1MA6|LINE|L1 276827 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 192.333-54 chr8 131124218 131124708 + 0.833333 NA Intergenic Intergenic -83554 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 210.333-27 chr4 35272577 35273217 + 0.833333 NA Intergenic Intergenic 971042 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 231.5-21 chr7 35737636 35738345 + 0.833333 NA Intergenic AluSx1|SINE|Alu 21553 NR_108082 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 189.333-16 chr15 79867837 79868162 + 0.833333 NA intron (NR_037654, intron 2 of 2) intron (NR_037654, intron 2 of 2) 28998 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 236-6 chr15 55030123 55030487 + 0.833333 NA Intergenic Intergenic -26442 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 297.5-11 chr4 149926260 149926873 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -110723 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 114.167-4 chr1 186522589 186522798 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR -61579 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 125.833-17 chr11 120196731 120196902 + 0.833333 NA Intergenic Intergenic -14216 NM_178507 220323 Hs.445081 NM_178507 ENSG00000184232 OAF NS5ATP13TP2 out at first homolog protein-coding 137.333-100 chr8 121188057 121188230 + 0.833333 NA Intergenic MER113A|DNA|hAT-Charlie -376097 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 264.667-7 chr12 61593358 61593868 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger 599226 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 159.667-58 chr3 33060876 33061147 + 0.833333 NA intron (NM_001079811, intron 5 of 15) intron (NM_001079811, intron 5 of 15) 35821 NM_001079811 2720 Hs.443031 NM_000404 ENSG00000170266 GLB1 EBP|ELNR1|MPS4B galactosidase beta 1 protein-coding 191.5-24 chr2 121451456 121451840 + 0.833333 NA intron (NM_015282, intron 15 of 38) intron (NM_015282, intron 15 of 38) -79232 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 153.833-40 chr21 30342624 30342888 + 0.833333 NA Intergenic Intergenic -5062 NM_001077711 643812 Hs.580881 NM_001077711 ENSG00000206107 KRTAP27-1 - keratin associated protein 27-1 protein-coding 147.333-18 chr12 74464029 74464264 + 0.833333 NA Intergenic L1ME3F|LINE|L1 -73689 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 130.833-70 chr8 100349070 100349320 + 0.833333 NA Intergenic (AAT)n|Simple_repeat|Simple_repeat -12991 NM_001280539 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 183.667-62 chr5 44408348 44408772 + 0.833333 NA intron (NR_108034, intron 2 of 2) L1ME2z|LINE|L1 -19140 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 143.5 chr1 104897140 104897436 + 0.833333 NA Intergenic L1MA5A|LINE|L1 721647 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 245.333-22 chr7 41753860 41754260 + 0.833333 NA intron (NR_027118, intron 2 of 3) MER41A|LTR|ERV1 -50970 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 346.5-4 chr2 79461159 79461625 + 0.833333 NA Intergenic Intergenic 39452 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 122.167-73 chr8 130350626 130350961 + 0.833333 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) -54260 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 182.167-8 chr11 18856908 18857421 + 0.833333 NA Intergenic L1PA15-16|LINE|L1 -64443 NM_001278236 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 118.167-38 chr20 51103310 51103545 + 0.833333 NA Intergenic MLT1E2|LTR|ERVL-MaLR -80320 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 127.833-12 chr11 114829602 114829860 + 0.833333 NA Intergenic L2a|LINE|L2 151204 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 133.333-75 chr3 65145372 65145741 + 0.833333 NA Intergenic Intergenic -457556 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 137-59 chr2 135331607 135331992 + 0.833333 NA intron (NM_001286569, intron 6 of 21) L1PA6|LINE|L1 195171 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 226.167-29 chr8 67074179 67074547 + 0.833333 NA intron (NM_001363133, intron 2 of 27) intron (NM_001363133, intron 2 of 27) -9485 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 262.667-17 chr19 52066032 52066596 + 0.833333 NA exon (NM_001352298, exon 6 of 6) exon (NM_001352298, exon 6 of 6) -17476 NM_014650 9668 Hs.655934 NM_014650 ENSG00000256087 ZNF432 - zinc finger protein 432 protein-coding 169-34 chr3 102746652 102746975 + 0.833333 NA Intergenic Intergenic 311798 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 161.5-5 chr11 13688098 13688626 + 0.833333 NA intron (NM_032228, intron 1 of 11) intron (NM_032228, intron 1 of 11) 19694 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 150.833-28 chr3 951408 951693 + 0.833333 NA Intergenic Intergenic -141474 NM_001349361 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 123.167-3 chr1 104789941 104790254 + 0.833333 NA Intergenic Intergenic 717074 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 271.333-11 chr2 62708390 62709044 + 0.833333 NA intron (NM_001142615, intron 2 of 22) L2c|LINE|L2 1820 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 161.667-14 chr10 11548970 11549324 + 0.833333 NA intron (NM_014688, intron 2 of 14) L3|LINE|CR1 -16867 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 173.833-41 chr4 153392335 153392624 + 0.833333 NA intron (NR_045605, intron 6 of 9) intron (NR_045605, intron 6 of 9) 47791 NM_032117 84057 Hs.294088 NM_032117 ENSG00000121211 MND1 GAJ meiotic nuclear divisions 1 protein-coding 147.167-55 chr7 33975771 33975969 + 0.833333 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 70331 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 114.333-64 chr2 30587297 30587818 + 0.833333 NA intron (NM_182551, intron 6 of 6) intron (NM_182551, intron 6 of 6) 140311 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 178-43 chr4 147052562 147052795 + 0.833333 NA Intergenic Intergenic -106792 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 128.5-53 chr3 94297791 94297989 + 0.833333 NA Intergenic ERV24B_Prim-int|LTR|ERV1 234829 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 123.667-106 chr8 53033914 53034160 + 0.833333 NA Intergenic Intergenic 94129 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 159.667-54 chr20 14431021 14431280 + 0.833333 NA intron (NM_001351663, intron 3 of 17) L2|LINE|L2 -93483 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 156.5-55 chr22 35125317 35125609 + 0.833333 NA intron (NR_126356, intron 4 of 5) intron (NR_126356, intron 4 of 5) 59305 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 176.333-67 chrX 36563025 36563464 + 0.833333 NA Intergenic Intergenic -122952 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 228-22 chr20 36766864 36767215 + 0.833333 NA intron (NM_001145317, intron 3 of 9) AluSc|SINE|Alu 6712 NM_001145316 79980 Hs.632268 NM_024918 ENSG00000149636 DSN1 C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3 DSN1 component of MIS12 kinetochore complex protein-coding 191.167-9 chr15 44366697 44367035 + 0.833333 NA intron (NR_157849, intron 7 of 9) FRAM|SINE|Alu -60763 NM_016396 51496 Hs.497967 NM_016396 ENSG00000137770 CTDSPL2 HSPC058|HSPC129 CTD small phosphatase like 2 protein-coding 302.167-5 chr3 102782796 102783541 + 0.833333 NA Intergenic LTR85b|LTR|Gypsy? 348153 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 128.667-18 chr10 63786048 63786338 + 0.833333 NA Intergenic LTR33|LTR|ERVL -264303 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 120.667-12 chr10 22848480 22848659 + 0.833333 NA Intergenic Intergenic -79455 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 280-17 chr7 140158759 140159364 + 0.833333 NA intron (NM_030647, intron 1 of 19) L2|LINE|L2 17922 NM_030647 80853 Hs.308710 NM_030647 ENSG00000006459 KDM7A JHDM1D lysine demethylase 7A protein-coding 163.5-80 chr9 119529416 119529670 + 0.833333 NA Intergenic Intergenic -160108 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 241.5-5 chr1 238101840 238102184 + 0.833333 NA Intergenic LTR16|LTR|ERVL -211090 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 158.333-69 chr8 70268709 70269003 + 0.833333 NA intron (NM_001321711, intron 2 of 21) intron (NM_001321711, intron 2 of 21) 134534 NM_001321713 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 115-53 chr3 110059305 110059458 + 0.833333 NA Intergenic Intergenic 456553 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 128.833-88 chr9 15411765 15412005 + 0.833333 NA Intergenic L1PB1|LINE|L1 -10899 NM_001039697 6619 Hs.546299 NM_003084 ENSG00000164975 SNAPC3 PTFbeta|SNAP50 small nuclear RNA activating complex polypeptide 3 protein-coding 235.5-32 chr8 61703044 61703359 + 0.833333 NA intron (NM_001164755, intron 1 of 12) L1ME2z|LINE|L1 11391 NM_004318 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 173.833-56 chr7 42614918 42615317 + 0.833333 NA Intergenic Intergenic 91330 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 133.5-16 chr11 43820297 43820521 + 0.833333 NA intron (NM_016142, intron 6 of 10) intron (NM_016142, intron 6 of 10) -60422 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 175.5-43 chr3 120236686 120236975 + 0.833333 NA intron (NM_001168271, intron 2 of 8) L1PA10|LINE|L1 7465 NM_153002 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 180.5-51 chr8 134791398 134791668 + 0.833333 NA Intergenic L1MEg|LINE|L1 9074 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 218.667-7 chr11 10166367 10166683 + 0.833333 NA intron (NM_030962, intron 2 of 39) intron (NM_030962, intron 2 of 39) 127682 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 239.833-16 chr2 107725700 107726011 + 0.833333 NA Intergenic L1MEc|LINE|L1 -28257 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 211.5-26 chr4 170919899 170920238 + 0.833333 NA Intergenic L1ME1|LINE|L1 -120534 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 205.333-55 chr7 17152765 17153370 + 0.833333 NA Intergenic L1MC2|LINE|L1 -145585 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 120.333-92 chr5 15140956 15141316 + 0.833333 NA Intergenic Intergenic 125424 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 216.667-44 chr7 36803607 36803983 + 0.833333 NA Intergenic L1MEd|LINE|L1 -79246 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 155-26 chr15 36888891 36889171 + 0.833333 NA TTS (NM_001220482) TTS (NM_001220482) -2498 NR_024264 145845 Hs.302693 NM_001101327 LOC145845 - uncharacterized LOC145845 ncRNA 196.167-25 chr4 67868476 67868876 + 0.833333 NA intron (NM_004262, intron 1 of 9) intron (NM_004262, intron 1 of 9) 15326 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 177.833-23 chr22 33675377 33675731 + 0.833333 NA intron (NM_133642, intron 2 of 14) L2b|LINE|L2 29366 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 129.333-102 chr8 103089210 103089438 + 0.833333 NA Intergenic Intergenic -31708 NR_145429 379034 Hs.591862 NR_145429 LINC01181 - long intergenic non-protein coding RNA 1181 ncRNA 219.667-30 chr8 77931054 77931611 + 0.833333 NA Intergenic Intergenic 480635 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 121.333-82 chr5 33290539 33290919 + 0.833333 NA Intergenic Intergenic 60994 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 353 chr15 67531270 67532111 + 0.833333 NA Intergenic L1MB8|LINE|L1 -9846 NR_040054 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 191.833-36 chr9 29912825 29913267 + 0.833333 NA Intergenic Intergenic 495408 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 187.167-3 chr1 210811343 210811697 + 0.833333 NA intron (NM_002238, intron 7 of 10) HAL1|LINE|L1 321854 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 178.667-27 chr2 112787532 112787894 + 0.833333 NA Intergenic Intergenic -2315 NM_000575 3552 Hs.1722 NM_000575 ENSG00000115008 IL1A IL-1A|IL1|IL1-ALPHA|IL1F1 interleukin 1 alpha protein-coding 279.666-5 chr5 4144770 4145323 + 0.833333 NA Intergenic Intergenic 549214 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 206.667-12 chr11 31842502 31842824 + 0.833333 NA intron (NR_033971, intron 1 of 2) intron (NR_033971, intron 1 of 2) 16096 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 305.667-6 chr17 59213076 59213471 + 0.833333 NA exon (NM_018149, exon 3 of 4) exon (NM_018149, exon 3 of 4) 3263 NM_018149 55181 Hs.7296 NM_018149 ENSG00000167447 SMG8 C17orf71 SMG8 nonsense mediated mRNA decay factor protein-coding 242.167-4 chr1 208641750 208642073 + 0.833333 NA Intergenic Intergenic -86777 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 174.5-51 chr7 124163047 124163412 + 0.833333 NA Intergenic L1PA17|LINE|L1 -130162 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 137.5-44 chr2 49531488 49531747 + 0.833333 NA Intergenic L1M4|LINE|L1 -377090 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 120-107 chr8 107464002 107464185 + 0.833333 NA intron (NM_001199859, intron 1 of 8) MIR|SINE|MIR 33825 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 153.5-54 chr5 51246884 51247293 + 0.833333 NA Intergenic L4_C_Mam|LINE|RTE-X 136244 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 249.5-32 chr8 119645084 119645505 + 0.833333 NA intron (NM_001330600, intron 1 of 25) intron (NM_001330600, intron 1 of 25) -6455 NM_001130863 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 199-39 chr8 121039990 121040250 + 0.833333 NA Intergenic Intergenic -228074 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 133.5-38 chr2 218612915 218613209 + 0.833333 NA intron (NM_032726, intron 1 of 15) intron (NM_032726, intron 1 of 15) 5163 NM_032726 84812 Hs.632528 NM_032726 ENSG00000115556 PLCD4 - phospholipase C delta 4 protein-coding 146.5-11 chr10 52378668 52379222 + 0.833333 NA Intergenic Intergenic 64664 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 129.667-48 chr2 56645509 56645858 + 0.833333 NA Intergenic L1MA8|LINE|L1 -459913 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 132-4 chr1 85934312 85934531 + 0.833333 NA intron (NM_152890, intron 24 of 59) intron (NM_152890, intron 24 of 59) 222050 NM_001349955 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 153.5-46 chr3 113145116 113145431 + 0.833333 NA intron (NR_110823, intron 3 of 3) intron (NR_110823, intron 3 of 3) 22458 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 231.667-3 chr10 51896558 51897080 + 0.833333 NA intron (NM_001098512, intron 4 of 17) intron (NM_001098512, intron 4 of 17) -197224 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 191.5-10 chr11 76440355 76440654 + 0.833333 NA Intergenic MIRb|SINE|MIR -4514 NM_001300942 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 176.833-42 chrX 116181868 116182170 + 0.833333 NA Intergenic L1PA5|LINE|L1 11275 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 131-24 chr17 29368305 29368583 + 0.833333 NA Intergenic MIRb|SINE|MIR -22218 NR_039749 100616122 NR_039749 ENSG00000284162 MIR4523 - microRNA 4523 ncRNA 144.167-28 chr17 21120787 21121051 + 0.833333 NA Intergenic L1MDa|LINE|L1 -6009 NM_015510 25979 Hs.386989 NM_015510 ENSG00000109016 DHRS7B CGI-93|SDR32C1 dehydrogenase/reductase 7B protein-coding 240.667-38 chr6 94770693 94771108 + 0.833333 NA Intergenic Intergenic 806551 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 150.167-50 chr5 39758957 39759287 + 0.833333 NA Intergenic Intergenic 238691 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 141.5-80 chr6 154285595 154285924 + 0.833333 NA intron (NM_015553, intron 2 of 11) intron (NM_015553, intron 2 of 11) 44322 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 195.833-20 chr20 59368923 59369229 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 68465 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 152.333-11 chr11 63548125 63548358 + 0.833333 NA Intergenic LTR19A|LTR|ERV1 11433 NM_004585 5920 Hs.17466 NM_004585 ENSG00000133321 PLAAT4 HRASLS4|HRSL4|PLA1/2-3|PLAAT-4|RARRES3|RIG1|TIG3 phospholipase A and acyltransferase 4 protein-coding 140.333-72 chr5 118103538 118103790 + 0.833333 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -178910 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 297.5-15 chrX 88070148 88070852 + 0.833333 NA Intergenic MIR|SINE|MIR 552698 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 127.667-87 chr7 90868678 90868950 + 0.833333 NA intron (NM_012395, intron 5 of 13) MIRc|SINE|MIR 158998 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 189-5 chr12 13129116 13129462 + 0.833333 NA Intergenic Intergenic -25622 NM_001367364 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 304.667-6 chr11 57139369 57139969 + 0.833333 NA Intergenic AluJb|SINE|Alu -42284 NM_001005210 219527 Hs.199853 NM_001005210 ENSG00000183908 LRRC55 - leucine rich repeat containing 55 protein-coding 132.833-2 chr1 61109461 61109622 + 0.833333 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 26980 NM_005595 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 214.333-38 chr5 121990149 121990528 + 0.833333 NA intron (NM_152546, intron 3 of 7) L1PA16|LINE|L1 28363 NM_152546 153443 Hs.107622 NM_152546 ENSG00000151304 SRFBP1 BUD22|P49|Rlb1|STRAP|p49/STRAP serum response factor binding protein 1 protein-coding 302.833-5 chr3 56830751 56831403 + 0.833333 NA intron (NM_001128615, intron 4 of 12) L2a|LINE|L2 -29128 NM_019555 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 142.333-94 chr8 19464920 19465192 + 0.833333 NA intron (NM_001130518, intron 4 of 9) L1MB3|LINE|L1 137489 NM_001354494 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 258.167-17 chr7 114173689 114174027 + 0.833333 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 87531 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 193.833-13 chr13 75143957 75144396 + 0.833333 NA Intergenic LTR78|LTR|ERV1 96205 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 164.333-42 chr3 68464961 68465251 + 0.833333 NA intron (NM_001252216, intron 3 of 4) MLT1L|LTR|ERVL-MaLR -35531 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 199.667-62 chr8 127995097 127995415 + 0.833333 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) -13642 NR_031611 100302170 NR_031611 ENSG00000283200 MIR1206 MIRN1206|hsa-mir-1206 microRNA 1206 ncRNA 148.5-28 chr16 60054729 60054977 + 0.833333 NA TTS (NR_110917) TTS (NR_110917) 199500 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 141-87 chr8 86579464 86579800 + 0.833333 NA intron (NM_019098, intron 15 of 17) LTR33|LTR|ERVL 65197 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 191.167-10 chr16 76887676 76888178 + 0.833333 NA Intergenic AluJb|SINE|Alu 18991 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 119.833-95 chr9 107404349 107404743 + 0.833333 NA Intergenic Intergenic 62039 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 PRCAT37 long intergenic non-protein coding RNA 1509 ncRNA 167.5-31 chr2 67712362 67712725 + 0.833333 NA Intergenic Intergenic 113019 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 160-63 chr5 127210741 127211236 + 0.833333 NA Intergenic Intergenic -79776 NM_001308119 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 144.833-78 chrX 85316270 85316466 + 0.833333 NA intron (NM_001307940, intron 7 of 15) intron (NM_001307940, intron 7 of 15) 63297 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 154.833-48 chr5 37477365 37477588 + 0.833333 NA intron (NM_001345998, intron 7 of 17) intron (NM_001345998, intron 7 of 17) 98158 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 221.5-39 chr8 103436463 103437090 + 0.833333 NA intron (NM_015420, intron 8 of 10) MIRc|SINE|MIR 21390 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 145.5-87 chr9 68743099 68743377 + 0.833333 NA intron (NM_003558, intron 2 of 15) AluJb|SINE|Alu -36827 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 117-106 chr6 156458251 156458780 + 0.833333 NA Intergenic Intergenic 79765 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 134.667-53 chr20 21085335 21085641 + 0.833333 NA Intergenic L1ME3A|LINE|L1 20870 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 185-50 chr8 76543622 76543897 + 0.833333 NA Intergenic L2a|LINE|L2 137105 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 183.167-13 chr12 82240391 82240824 + 0.833333 NA Intergenic Intergenic 117780 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 179.833-4 chr1 236393870 236394275 + 0.833333 NA promoter-TSS (NM_145861) promoter-TSS (NM_145861) -214 NM_145861 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 187.333-53 chr3 109865914 109866199 + 0.833333 NA Intergenic L1MCa|LINE|L1 263228 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 126.667-109 chr8 139031068 139031273 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -117129 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 184.333-25 chr2 23788645 23788906 + 0.833333 NA intron (NR_125717, intron 20 of 28) intron (NR_125717, intron 20 of 28) 138348 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 210.167-20 chr4 103824851 103825157 + 0.833333 NA Intergenic MLT1F2|LTR|ERVL-MaLR -105019 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 235.5-11 chr15 59381079 59381543 + 0.833333 NA Intergenic Intergenic -8440 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 255.167-7 chr3 36810323 36810941 + 0.833333 NA Intergenic Intergenic 11868 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 265.333-21 chr8 52838911 52839255 + 0.833333 NA Intergenic AluSq2|SINE|Alu -100825 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 206.167-10 chr2 100310762 100311241 + 0.833333 NA intron (NM_198461, intron 1 of 11) Cheshire|DNA|hAT-Charlie 11732 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 149.5-7 chr1 189865054 189865304 + 0.833333 NA Intergenic MIRb|SINE|MIR 610831 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 140.5-34 chr18 25112023 25112311 + 0.833333 NA intron (NM_001308225, intron 4 of 6) (TACA)n|Simple_repeat|Simple_repeat -124188 NR_146903 105372030 NR_146903 LINC01894 - long intergenic non-protein coding RNA 1894 ncRNA 125.5-86 chr9 85512602 85512847 + 0.833333 NA Intergenic MIRb|SINE|MIR 229305 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 267.167-2 chr1 46346746 46347506 + 0.833333 NA intron (NM_001256127, intron 3 of 5) intron (NM_001256127, intron 3 of 5) 5948 NM_001256127 387338 Hs.163424 NM_199044 ENSG00000117481 NSUN4 SHTAP NOP2/Sun RNA methyltransferase 4 protein-coding 248.167-2 chr1 103238328 103238800 + 0.833333 NA Intergenic Intergenic -130042 NR_134980 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 289.5-9 chr4 36767725 36768287 + 0.833333 NA Intergenic Intergenic -126106 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 161.333-13 chr11 93760860 93761171 + 0.833333 NA intron (NM_001369406, intron 8 of 8) L1ME4b|LINE|L1 14572 NM_001369406 28970 Hs.8360 NM_014039 ENSG00000182919 C11orf54 PTD012|PTOD012 chromosome 11 open reading frame 54 protein-coding 239.333-14 chr2 188462301 188462658 + 0.833333 NA intron (NM_016315, intron 2 of 11) L1MA2|LINE|L1 164987 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 206.167 chr12 8022471 8022847 + 0.833333 NA Intergenic AluJb|SINE|Alu -10057 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 139.667-76 chr5 77961394 77961646 + 0.833333 NA Intergenic L1ME4a|LINE|L1 3273 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 197.667-25 chr16 63620731 63621134 + 0.833333 NA Intergenic Intergenic 1501131 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 128.5-9 chr1 229879693 229880096 + 0.833333 NA intron (NR_146476, intron 1 of 1) intron (NR_146476, intron 1 of 1) 5924 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 204-23 chr3 40695348 40695921 + 0.833333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 170674 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 131.5-84 chr8 109699274 109699842 + 0.833333 NA Intergenic Intergenic -7767 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 192.333-20 chr19 52005602 52005969 + 0.833333 NA intron (NM_001321322, intron 1 of 5) MER58A|DNA|hAT-Charlie 2426 NM_001199324 284370 Hs.368355 NM_198480 ENSG00000197619 ZNF615 - zinc finger protein 615 protein-coding 161.5-16 chr17 61617388 61617734 + 0.833333 NA Intergenic Intergenic -26342 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 120.167-55 chr3 17365782 17365973 + 0.833333 NA intron (NM_014744, intron 13 of 21) MIRb|SINE|MIR 334143 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 271-10 chr4 42065627 42066034 + 0.833333 NA intron (NM_006345, intron 12 of 17) MER6|DNA|TcMar-Tigger 75300 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 250.833 chr10 36855797 36856213 + 0.833333 NA Intergenic L1MB1|LINE|L1 -269852 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 235 chr1 12337519 12337968 + 0.833333 NA intron (NM_018156, intron 39 of 68) intron (NM_018156, intron 39 of 68) 107713 NM_015378 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 158.5-29 chr18 8101691 8101975 + 0.833333 NA intron (NM_002845, intron 11 of 30) intron (NM_002845, intron 11 of 30) 265201 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 202.167-37 chr8 123200946 123201229 + 0.833333 NA TTS (NR_024479) TTS (NR_024479) 1656 NR_024479 100131726 Hs.660862 NR_024479 ENSG00000204949 FAM83A-AS1 HCCC11|HCCC11_v1|HCCC11_v2 FAM83A antisense RNA 1 ncRNA 128.667-19 chr10 77169427 77169602 + 0.833333 NA intron (NM_001271519, intron 5 of 28) AluJr|SINE|Alu 28683 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 197.167-58 chr9 132357798 132358113 + 0.833333 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat -2969 NM_001351528 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 287-3 chr14 61659903 61660258 + 0.833333 NA Intergenic AluJo|SINE|Alu -35433 NM_001530 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 182.833-42 chr5 81649793 81650257 + 0.833333 NA intron (NM_012446, intron 2 of 16) Tigger19a|DNA|TcMar-Tigger 101228 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 143.667-60 chr2 137792238 137792555 + 0.833333 NA Intergenic Intergenic 135536 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 144.667-67 chr4 40732514 40732712 + 0.833333 NA Intergenic AluSx|SINE|Alu -17342 NM_001330648 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 186.833-47 chr8 119035017 119035467 + 0.833333 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) -32005 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 142.667-68 chr3 45431494 45431757 + 0.833333 NA intron (NM_001368263, intron 5 of 20) L1M4c|LINE|L1 43049 NM_015340 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 129-10 chr10 43066689 43066874 + 0.833333 NA Intergenic MIRb|SINE|MIR -10246 NM_020630 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 170-72 chr7 97409145 97409534 + 0.833333 NA Intergenic Intergenic 292746 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 203.833-2 chr10 32665368 32665707 + 0.833333 NA intron (NM_001321115, intron 22 of 43) L1MA8|LINE|L1 219397 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 137-12 chr10 68341133 68341451 + 0.833333 NA exon (NM_012207, exon 7 of 10) exon (NM_012207, exon 7 of 10) -8364 NM_022129 64081 Hs.198158 NM_022129 ENSG00000108187 PBLD HEL-S-306|MAWBP|MAWDBP phenazine biosynthesis like protein domain containing protein-coding 165.833-49 chr5 74983869 74984292 + 0.833333 NA Intergenic Intergenic 68478 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 186.167-42 chr8 124235863 124236167 + 0.833333 NA intron (NR_125420, intron 1 of 2) intron (NR_125420, intron 1 of 2) 11383 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 169-44 chr5 10519718 10520077 + 0.833333 NA intron (NR_134289, intron 1 of 2) intron (NR_134289, intron 1 of 2) 2187 NR_134289 389273 Hs.519206 NR_134289 ENSG00000249160 LINC02213 - long intergenic non-protein coding RNA 2213 ncRNA 153.333-34 chr2 12806912 12807119 + 0.833333 NA Intergenic L2c|LINE|L2 69648 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 163.833-14 chr11 90483219 90483452 + 0.833333 NA intron (NR_104190, intron 1 of 6) MamRep4096|DNA|hAT-Tip100 72522 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 164.5-58 chr8 62721456 62721994 + 0.833333 NA intron (NM_001304533, intron 3 of 6) intron (NM_001304533, intron 3 of 6) -256136 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 117.667-70 chr2 192646846 192647079 + 0.833333 NA Intergenic Intergenic -102883 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 255.333-15 chr3 105075154 105075603 + 0.833333 NA Intergenic L1ME1|LINE|L1 -291335 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 251.5-14 chr3 89039563 89040009 + 0.833333 NA Intergenic L1MB8|LINE|L1 -67835 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 128.333-59 chr2 57383810 57384022 + 0.833333 NA Intergenic Intergenic -523735 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 153.333-75 chr7 41947705 41947924 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR -244724 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 182.167-5 chr1 202145766 202146160 + 0.833333 NA Intergenic AluSz|SINE|Alu -1220 NM_001256129 127829 Hs.497399 NM_138795 ENSG00000143862 ARL8A ARL10B|GIE2 ADP ribosylation factor like GTPase 8A protein-coding 186.5-64 chr7 68484552 68485090 + 0.833333 NA Intergenic Intergenic 464568 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 140.167-5 chr10 85302820 85303046 + 0.833333 NA Intergenic Intergenic -103995 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 260.667-9 chr2 31476600 31476942 + 0.833333 NA Intergenic MLT1F1|LTR|ERVL-MaLR -62029 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 117.333-90 chr5 125837315 125837539 + 0.833333 NA Intergenic Intergenic -342150 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 130.333-91 chr8 78441322 78441618 + 0.833333 NA Intergenic L2b|LINE|L2 -74870 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 233.5-31 chr9 82143655 82144165 + 0.833333 NA Intergenic Intergenic 155138 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 143.333-36 chr2 122090570 122090965 + 0.833333 NA Intergenic L1PB2|LINE|L1 335116 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 138.333-35 chr14 85782827 85783143 + 0.833333 NA Intergenic Intergenic -151693 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 122.333-7 chr1 210710275 210710511 + 0.833333 NA intron (NM_002238, intron 10 of 10) intron (NM_002238, intron 10 of 10) 381027 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 223.667-20 chr4 59214149 59214666 + 0.833333 NA Intergenic Intergenic 200834 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 180.833-7 chr11 12376361 12376686 + 0.833333 NA Intergenic Intergenic -1048 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 172.667-44 chr20 52926033 52926253 + 0.833333 NA Intergenic Intergenic -46215 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 212.833-9 chr2 154704190 154704730 + 0.833333 NA intron (NM_001260508, intron 1 of 1) intron (NM_001260508, intron 1 of 1) 5765 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 146-56 chr5 17198384 17198621 + 0.833333 NA intron (NR_027253, intron 1 of 2) HAL1|LINE|L1 -18321 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 157.833-41 chr2 186598740 186599055 + 0.833333 NA intron (NM_001145000, intron 1 of 27) intron (NM_001145000, intron 1 of 27) -1308 NM_001144999 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 316.333-4 chr11 29572451 29573065 + 0.833333 NA Intergenic Intergenic -21655 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 217.5-51 chr8 126533139 126533899 + 0.833333 NA Intergenic Intergenic 24959 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 194.167-4 chr10 56784653 56785117 + 0.833333 NA Intergenic Intergenic -423612 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 173.833-43 chr5 5660961 5661237 + 0.833333 NA Intergenic L1MB5|LINE|L1 238422 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 178.333-41 chr5 44372477 44373062 + 0.833333 NA intron (NM_004465, intron 1 of 2) MLT1D-int|LTR|ERVL-MaLR -15963 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 264-17 chr5 86446496 86447274 + 0.833333 NA Intergenic Intergenic 164441 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 160.167-13 chr13 67219205 67219631 + 0.833333 NA 3' UTR (NM_001318374, exon 2 of 2) 3' UTR (NM_001318374, exon 2 of 2) 10918 NM_020403 5101 Hs.654709 NM_020403 ENSG00000184226 PCDH9 - protocadherin 9 protein-coding 252.667-4 chr11 61359116 61359573 + 0.833333 NA intron (NM_153611, intron 1 of 6) intron (NM_153611, intron 1 of 6) -2030 NM_001161452 220002 Hs.22546 NM_153611 ENSG00000162144 CYB561A3 CYBASC3|LCYTB cytochrome b561 family member A3 protein-coding 171.333-68 chr8 131905755 131906089 + 0.833333 NA intron (NM_001323555, intron 1 of 22) intron (NM_001323555, intron 1 of 22) 1829 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 164.833-24 chr2 127927522 127927739 + 0.833333 NA Intergenic LTR54|LTR|ERV1 -41690 NM_001199140 83607 Hs.546449 NM_031445 ENSG00000144233 AMMECR1L - AMMECR1 like protein-coding 222.167-24 chr3 158395051 158395478 + 0.833333 NA intron (NM_001271838, intron 6 of 9) L1PA15|LINE|L1 -131444 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 167.333-69 chr9 24635167 24635539 + 0.833333 NA Intergenic L1PA10|LINE|L1 -89456 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 148.333-49 chr2 186101737 186102022 + 0.833333 NA Intergenic MLT1J1|LTR|ERVL-MaLR -15562 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 121-2 chr1 77063651 77063964 + 0.833333 NA 3' UTR (NM_001320273, exon 4 of 4) 3' UTR (NM_001320273, exon 4 of 4) 3664 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 152.833-20 chr16 76920151 76920495 + 0.833333 NA Intergenic L2a|LINE|L2 51387 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 155.5-58 chr8 88309782 88310247 + 0.833333 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 17469 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 132.5-2 chr1 111660753 111661014 + 0.833333 NA intron (NM_001010935, intron 2 of 8) L2|LINE|L2 -3911 NM_001370217 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 144.167-65 chr5 154600078 154600406 + 0.833333 NA Intergenic MIRb|SINE|MIR -4170 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 270.833-11 chr2 19573095 19573484 + 0.833333 NA Intergenic Intergenic -214666 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 151.833-12 chr11 54755645 54755953 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 48967 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 139.5-66 chr7 51436816 51437089 + 0.833333 NA Intergenic AluSq2|SINE|Alu -43696 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 224.333-10 chr14 53630101 53630430 + 0.833333 NA Intergenic Intergenic 318219 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 146.167-42 chr4 42198248 42198587 + 0.833333 NA Intergenic Intergenic -45762 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 143.5-74 chr7 3186260 3186451 + 0.833333 NA Intergenic AluY|SINE|Alu -27782 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 201.667-39 chr7 18765919 18766474 + 0.833333 NA intron (NM_058176, intron 14 of 22) MIR1_Amn|SINE|MIR 256926 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 286.167-7 chr22 17563230 17563721 + 0.833333 NA promoter-TSS (NM_001303484) promoter-TSS (NM_001303484) -23 NM_031481 83733 Hs.282982 NM_031481 ENSG00000182902 SLC25A18 GC2 solute carrier family 25 member 18 protein-coding 215.333-53 chr8 114354583 114354918 + 0.833333 NA Intergenic Tigger18a|DNA|TcMar-Tigger -917811 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 137.333-60 chr3 17687408 17687593 + 0.833333 NA intron (NM_001134381, intron 1 of 23) intron (NM_001134381, intron 1 of 23) 12520 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 338.5-2 chr15 68189652 68190439 + 0.833333 NA TTS (NM_033429) TTS (NM_033429) 16065 NM_033429 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 150.5-34 chr17 59094536 59094779 + 0.833333 NA intron (NM_001320987, intron 1 of 22) intron (NM_001320987, intron 1 of 22) 12223 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 167.333-13 chr10 101791495 101791751 + 0.833333 NA intron (NM_012215, intron 12 of 15) intron (NM_012215, intron 12 of 15) -8210 NM_006993 10360 Hs.90691 NM_006993 ENSG00000107833 NPM3 PORMIN|TMEM123 nucleophosmin/nucleoplasmin 3 protein-coding 262.5-22 chr6 54341176 54341657 + 0.833333 NA intron (NM_014464, intron 4 of 10) intron (NM_014464, intron 4 of 10) 32975 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 130.833-11 chr10 130676502 130676742 + 0.833333 NA Intergenic Intergenic 286046 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 130.667-81 chr6 49580593 49580808 + 0.833333 NA Intergenic MER67C|LTR|ERV1 30032 NR_146861 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 257.667 chr1 66735952 66736428 + 0.833333 NA intron (NM_001350218, intron 19 of 22) (ATAT)n|Simple_repeat|Simple_repeat -16269 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 119.833-18 chr10 65788956 65789114 + 0.833333 NA Intergenic AluJo|SINE|Alu 217610 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 114.333-80 chr21 16976293 16976502 + 0.833333 NA Intergenic Intergenic 386160 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 205-7 chr14 69752880 69753149 + 0.833333 NA Intergenic Intergenic -14128 NM_001039465 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 120.833-52 chr4 76092242 76092569 + 0.833333 NA intron (NM_001130017, intron 3 of 9) L1MEc|LINE|L1 17710 NM_001179 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 210.667-56 chr8 130840332 130840710 + 0.833333 NA intron (NM_001115, intron 11 of 17) intron (NM_001115, intron 11 of 17) 200388 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 165.667-6 chr1 213177848 213178194 + 0.833333 NA intron (NR_146209, intron 8 of 11) AluJb|SINE|Alu 126780 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 208.667-8 chr10 65067376 65067795 + 0.833333 NA Intergenic L1ME1|LINE|L1 -143067 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 121.167-64 chr5 30479813 30480096 + 0.833333 NA Intergenic Intergenic 599394 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 134-50 chr17 51252793 51253034 + 0.833333 NA intron (NM_017643, intron 2 of 16) HAL1|LINE|L1 7136 NM_017643 54799 Hs.656803 NM_017643 ENSG00000011258 MBTD1 SA49P01 mbt domain containing 1 protein-coding 148.167-15 chr11 92760792 92761126 + 0.833333 NA intron (NM_001008781, intron 3 of 24) MamRep564|Unknown|Unknown 154669 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 133.167-53 chr6 34782152 34782332 + 0.833333 NA Intergenic L1M4|LINE|L1 -9841 NM_017754 54887 Hs.700656 NM_017754 ENSG00000065060 UHRF1BP1 C6orf107|ICBP90|dJ349A12.1 UHRF1 binding protein 1 protein-coding 216.333-31 chr4 70724315 70724813 + 0.833333 NA intron (NM_014961, intron 1 of 12) intron (NM_014961, intron 1 of 12) 2600 NM_014961 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 159.333-40 chr2 182752353 182752687 + 0.833333 NA intron (NR_073365, intron 16 of 23) intron (NR_073365, intron 16 of 23) 36263 NM_018981 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 123.333-2 chr1 33405779 33405971 + 0.833333 NA Intergenic L1MEg|LINE|L1 -30282 NM_001330488 1912 Hs.524271 NM_004427 ENSG00000134686 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 protein-coding 171.333-20 chr12 4520352 4520653 + 0.833333 NA intron (NM_001346157, intron 5 of 11) L1MCc|LINE|L1 17967 NM_020374 57102 Hs.302977 NM_020374 ENSG00000047621 C12orf4 - chromosome 12 open reading frame 4 protein-coding 246.167-28 chr7 3449233 3449734 + 0.833333 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 148231 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 187.5-25 chr2 211236325 211236641 + 0.833333 NA Intergenic Intergenic 618912 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 182.667-17 chr14 43469371 43469885 + 0.833333 NA Intergenic L1MEc|LINE|L1 1037655 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 147-85 chr8 107801055 107801637 + 0.833333 NA Intergenic AluSg|SINE|Alu 280593 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 166.833-45 chr8 130960632 130960975 + 0.833333 NA intron (NM_001115, intron 2 of 17) intron (NM_001115, intron 2 of 17) 80106 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 290.833-2 chr4 52352063 52352480 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR 300967 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 172.667-50 chr3 67858693 67859013 + 0.833333 NA intron (NR_109992, intron 5 of 6) intron (NR_109992, intron 5 of 6) -132739 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 147.5-73 chr5 132470019 132470262 + 0.833333 NA intron (NR_161242, intron 3 of 3) intron (NR_161242, intron 3 of 3) 20633 NM_001354924 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 256.167-7 chr15 59508672 59509258 + 0.833333 NA exon (NM_152450, exon 6 of 9) exon (NM_152450, exon 6 of 9) 70779 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 134.833-2 chr1 97247366 97247591 + 0.833333 NA intron (NM_000110, intron 18 of 22) intron (NM_000110, intron 18 of 22) 151555 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 229-37 chr6 65242721 65243264 + 0.833333 NA intron (NM_001292009, intron 12 of 43) L1MB7|LINE|L1 -58426 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 221.333-20 chr5 29749788 29750367 + 0.833333 NA Intergenic FRAM|SINE|Alu -130483 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 183.167-39 chr4 83129463 83129763 + 0.833333 NA Intergenic Intergenic -14884 NM_016619 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 140-38 chr2 122121094 122121324 + 0.833333 NA Intergenic AluY|SINE|Alu 365558 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 128-74 chr5 113308301 113308525 + 0.833333 NA intron (NM_001085377, intron 3 of 18) MamRep38|DNA|hAT -13475 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 159.167-68 chr8 98734606 98734961 + 0.833333 NA intron (NM_006281, intron 4 of 10) intron (NM_006281, intron 4 of 10) 90888 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 233-22 chr8 4293090 4293635 + 0.833333 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 701552 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 134.167-67 chr5 39235157 39235461 + 0.833333 NA intron (NM_001243093, intron 1 of 18) intron (NM_001243093, intron 1 of 18) -15746 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 171.833-47 chr8 90119230 90119664 + 0.833333 NA Intergenic Intergenic -36568 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 194.333 chr1 119919371 119919767 + 0.833333 NA exon (NM_024408, exon 31 of 34) exon (NM_024408, exon 31 of 34) -23054 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 150-7 chr10 75789409 75789671 + 0.833333 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 6779 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 131.333-41 chr18 62146946 62147216 + 0.833333 NA exon (NM_012327, exon 8 of 30) exon (NM_012327, exon 8 of 30) 39975 NM_176787 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 168.5-49 chr5 35988014 35988302 + 0.833333 NA intron (NM_001171873, intron 3 of 5) intron (NM_001171873, intron 3 of 5) 3232 NM_152404 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 190.833-20 chr17 73266991 73267421 + 0.833333 NA Intergenic MIRb|SINE|MIR -5326 NM_001129885 642843 Hs.534707 NM_001129885 ENSG00000187959 CPSF4L - cleavage and polyadenylation specific factor 4 like protein-coding 258.667-15 chr22 22141810 22142375 + 0.833333 NA Intergenic L1P4|LINE|L1 -98158 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 195.667-48 chr9 73772681 73772960 + 0.833333 NA Intergenic Intergenic -598711 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 205.833-2 chr1 98490057 98490341 + 0.833333 NA Intergenic Intergenic -171522 NM_015976 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 178.333-14 chr14 41111761 41112048 + 0.833333 NA intron (NR_109758, intron 3 of 3) intron (NR_109758, intron 3 of 3) 157193 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 119.667-57 chr20 25682082 25682344 + 0.833333 NA intron (NM_015655, intron 4 of 4) intron (NM_015655, intron 4 of 4) 4726 NM_001290261 26152 Hs.61881 NM_015655 ENSG00000130684 ZNF337 - zinc finger protein 337 protein-coding 183.833-31 chr4 43016920 43017286 + 0.833333 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 123837 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 396.5 chr15 89251161 89251941 + 0.833333 NA intron (NM_001113378, intron 2 of 37) L1MC5a|LINE|L1 7572 NM_018193 55215 Hs.513126 NM_018193 ENSG00000140525 FANCI KIAA1794 FA complementation group I protein-coding 175-57 chr6 145705261 145705616 + 0.833333 NA intron (NM_001360064, intron 1 of 3) AluJb|SINE|Alu -18561 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 246-8 chr17 69636253 69636878 + 0.833333 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 42578 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 156.167-51 chr6 64845656 64846047 + 0.833333 NA intron (NM_001292009, intron 19 of 43) intron (NM_001292009, intron 19 of 43) -455567 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 197.333-11 chr13 44167376 44167711 + 0.833333 NA Intergenic L1M1|LINE|L1 -6286 NM_024058 79024 Hs.730073 NM_024058 ENSG00000139656 SMIM2 C13orf44 small integral membrane protein 2 protein-coding 156.833-48 chr6 38345043 38345328 + 0.833333 NA intron (NM_052893, intron 7 of 11) intron (NM_052893, intron 7 of 11) -136411 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 235.167-15 chr20 37969862 37970225 + 0.833333 NA Intergenic Intergenic 63413 NM_014657 9675 Hs.655481 NM_014657 ENSG00000101407 TTI1 KIAA0406|smg-10 TELO2 interacting protein 1 protein-coding 140.667-74 chr6 99147046 99147353 + 0.833333 NA Intergenic Intergenic 22590 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 188.833-16 chr14 80287877 80288145 + 0.833333 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -56954 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 229.833-7 chr15 62981047 62981599 + 0.833333 NA Intergenic L2|LINE|L2 -61424 NM_001301244 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 280-3 chr10 23103019 23103610 + 0.833333 NA intron (NM_012228, intron 1 of 4) MIR3|SINE|MIR 7735 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 251.167-14 chr5 114367309 114367736 + 0.833333 NA intron (NM_001278204, intron 2 of 6) intron (NM_001278204, intron 2 of 6) 5203 NM_001278204 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 207.334-7 chr7 123764561 123765261 + 0.833333 NA Intergenic Intergenic -15908 NM_003941 8976 Hs.143728 NM_003941 ENSG00000106299 WASL N-WASP|NWASP|WASPB WASP like actin nucleation promoting factor protein-coding 189.167-26 chr2 134098248 134098555 + 0.833333 NA Intergenic MER92-int|LTR|ERV1 -21534 NM_001371457 118.5-76 chr4 99201289 99201538 + 0.833333 NA intron (NR_037884, intron 3 of 9) L2b|LINE|L2 17833 NR_132990 130 Hs.586161 NM_000672 ENSG00000172955 ADH6 ADH-5 alcohol dehydrogenase 6 (class V) protein-coding 123.667-28 chr12 51436106 51436524 + 0.833333 NA intron (NM_001258403, intron 1 of 16) L1MC5|LINE|L1 11198 NM_001258403 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 178.333-10 chr12 12984018 12984384 + 0.833333 NA non-coding (NR_149062, exon 3 of 3) non-coding (NR_149062, exon 3 of 3) 4364 NR_038920 100506314 Hs.127718 NR_038920 ENSG00000247498 GPRC5D-AS1 - GPRC5D and HEBP1 antisense RNA 1 ncRNA 162.5-73 chr8 80146287 80146552 + 0.833333 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 24702 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 182.833 chr1 58183343 58183661 + 0.833333 NA intron (NM_001353980, intron 1 of 5) L1MB7|LINE|L1 67001 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 145.667-10 chr10 77698862 77699046 + 0.833333 NA Intergenic L1ME3B|LINE|L1 -61146 NM_001161352 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 280.833-11 chr8 109169096 109169733 + 0.833333 NA Intergenic Charlie2a|DNA|hAT-Charlie 82786 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 162.667-4 chr1 119137575 119137876 + 0.833333 NA intron (NM_015836, intron 1 of 5) intron (NM_015836, intron 1 of 5) -2671 NR_125976 101929147 Hs.697821 NR_125974 ENSG00000231365 WARS2-AS1 - WARS2 antisense RNA 1 ncRNA 211.167-21 chr3 153476658 153477110 + 0.833333 NA intron (NR_146713, intron 5 of 6) L1M1|LINE|L1 -7611 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 165.167-46 chr6 6037030 6037416 + 0.833333 NA Intergenic MER20|DNA|hAT-Charlie -29618 NM_001278710 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 307.167-6 chr9 25260414 25260995 + 0.833333 NA Intergenic Intergenic 418154 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 166.833-34 chr5 158424893 158425187 + 0.833333 NA Intergenic Intergenic -15267 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 119.167-92 chr8 25170710 25171156 + 0.833333 NA Intergenic Intergenic -13756 NM_001322810 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 123.5-75 chr7 20645407 20645580 + 0.833333 NA intron (NM_001163941, intron 7 of 27) intron (NM_001163941, intron 7 of 27) -1837 NM_001163942 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 196.5-35 chr7 25615380 25615820 + 0.833333 NA intron (NR_157815, intron 3 of 4) intron (NR_157815, intron 3 of 4) 47540 NR_157823 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 215.667-34 chr4 121097475 121097762 + 0.833333 NA Intergenic Intergenic -25083 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 183.667-41 chr20 19134388 19134864 + 0.833333 NA Intergenic MER77B|LTR|ERVL -78016 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 113.833-80 chr6 159256972 159257189 + 0.833333 NA intron (NM_032532, intron 18 of 22) intron (NM_032532, intron 18 of 22) -87073 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 201 chr1 20627950 20628308 + 0.833333 NA Intergenic MER4B|LTR|ERV1 -5329 NM_032409 65018 Hs.389171 NM_032409 ENSG00000158828 PINK1 BRPK|PARK6 PTEN induced kinase 1 protein-coding 162.5-48 chr3 85476754 85476976 + 0.833333 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -28194 NM_001256505 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 272.5-6 chr14 62349935 62350397 + 0.833333 NA Intergenic L1MC3|LINE|L1 -210193 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 224.5-8 chr14 69287395 69287787 + 0.833333 NA intron (NM_020692, intron 1 of 15) intron (NM_020692, intron 1 of 15) 27433 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 161.333-57 chr5 37053496 37053811 + 0.833333 NA intron (NM_015384, intron 42 of 45) MER44A|DNA|TcMar-Tigger 176884 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 204.5-17 chr18 64142617 64143097 + 0.833333 NA intron (NR_033881, intron 2 of 9) L1ME5|LINE|L1 6169 NR_027245 221241 Hs.567778 NM_152728 ENSG00000179676 LINC00305 C18orf20|HsT1235|NCRNA00305 long intergenic non-protein coding RNA 305 ncRNA 122.5-40 chr16 84667464 84667670 + 0.833333 NA 3' UTR (NM_024731, exon 5 of 5) 3' UTR (NM_024731, exon 5 of 5) 19056 NM_001303451 79786 Hs.222731 NM_024731 ENSG00000135686 KLHL36 C16orf44 kelch like family member 36 protein-coding 164.167-48 chr4 55954103 55954770 + 0.833333 NA intron (NM_025009, intron 4 of 25) intron (NM_025009, intron 4 of 25) 5491 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 190.667-14 chr15 97573494 97574036 + 0.833333 NA Intergenic L1MEi|LINE|L1 -13067 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 217.833-5 chr13 23743212 23743578 + 0.833333 NA intron (NM_005932, intron 18 of 18) intron (NM_005932, intron 18 of 18) -145473 NM_001014442 542767 Hs.642624 NM_001014442 PCOTH C1QTNF9B-AS1 Pro-X-Gly collagen triple helix like repeat containing protein-coding 185.833-14 chr15 62087012 62087362 + 0.833333 NA Intergenic Intergenic 20210 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 147.833-62 chr7 108293755 108294031 + 0.833333 NA intron (NM_001371171, intron 3 of 28) MIRc|SINE|MIR 34633 NM_001371179 265.833-6 chr2 58732111 58732494 + 0.833333 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 211549 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 135.167-69 chr4 101038553 101038743 + 0.833333 NA intron (NM_001130691, intron 11 of 12) AluSg|SINE|Alu 202224 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 185.833-32 chr6 152593430 152593871 + 0.833333 NA intron (NM_182961, intron 3 of 145) intron (NM_182961, intron 3 of 145) 43201 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 160.167-7 chr10 90132282 90132742 + 0.833333 NA Intergenic L1MB4|LINE|L1 -175139 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 366.333-2 chr12 104449836 104450310 + 0.833333 NA Intergenic L1M5|LINE|L1 -6875 NM_001173982 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537|OCBMD carbohydrate sulfotransferase 11 protein-coding 209.333-18 chr2 139405908 139406319 + 0.833333 NA Intergenic MSTB|LTR|ERVL-MaLR 508789 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 200.667-17 chr12 5298978 5299323 + 0.833333 NA Intergenic Intergenic -55999 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 158.5-4 chr1 94702086 94702451 + 0.833333 NA intron (NR_160779, intron 2 of 5) intron (NR_160779, intron 2 of 5) 43632 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 149.833-55 chr7 126014075 126014328 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR -749910 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 209.5-43 chrX 82883620 82884371 + 0.833333 NA Intergenic LTR8A|LTR|ERV1 -624295 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 282-15 chr22 19299220 19299610 + 0.833333 NA Intergenic PRIMAX-int|LTR|ERV1 -7696 NM_001835 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 118.333-113 chr8 42503783 42503930 + 0.833333 NA intron (NM_006749, intron 1 of 10) intron (NM_006749, intron 1 of 10) -2625 NM_001257180 6575 Hs.653173 NM_006749 ENSG00000168575 SLC20A2 GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 solute carrier family 20 member 2 protein-coding 153.5-72 chr8 32431470 32431832 + 0.833333 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -9095 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 195.833-8 chr12 90062937 90063245 + 0.833333 NA Intergenic MLT1J2|LTR|ERVL-MaLR 115398 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 175.5-30 chr21 29003780 29004030 + 0.833333 NA TTS (NM_016940) TTS (NM_016940) -11028 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 123.333-14 chr10 25144656 25144851 + 0.833333 NA intron (NR_120649, intron 6 of 7) L2b|LINE|L2 -30248 NM_020752 57512 Hs.499108 NM_020752 ENSG00000151025 GPR158 - G protein-coupled receptor 158 protein-coding 149.5-32 chr19 44742878 44743131 + 0.833333 NA Intergenic MIR|SINE|MIR -5704 NM_005178 602 Hs.31210 NM_005178 ENSG00000069399 BCL3 BCL4|D19S37 BCL3 transcription coactivator protein-coding 148.167-55 chr4 56434371 56434718 + 0.833333 NA intron (NR_156493, intron 1 of 10) intron (NR_156493, intron 1 of 10) 1071 NR_156493 5471 Hs.331420 NM_002703 ENSG00000128059 PPAT ATASE|GPAT|PRAT phosphoribosyl pyrophosphate amidotransferase protein-coding 135-71 chr4 54789516 54789705 + 0.833333 NA Intergenic Intergenic 131682 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 183-26 chr2 104359367 104359771 + 0.833333 NA Intergenic Intergenic 48763 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 138-9 chr1 240072571 240073018 + 0.833333 NA Intergenic AluSx|SINE|Alu -19089 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 183.333-44 chr4 111204511 111204798 + 0.833333 NA Intergenic Intergenic -344007 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 189.333-30 chr2 201495221 201495496 + 0.833333 NA intron (NM_001168221, intron 14 of 15) intron (NM_001168221, intron 14 of 15) 43618 NM_001206864 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 176.333-12 chr10 87677580 87677888 + 0.833333 NA intron (NM_001015880, intron 1 of 12) intron (NM_001015880, intron 1 of 12) 17856 NM_004670 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 183-28 chr2 139034166 139034534 + 0.833333 NA Intergenic L1MEg|LINE|L1 137026 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 231.5-15 chr3 137623180 137623859 + 0.833333 NA Intergenic Intergenic -140796 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 273-17 chr8 58313618 58314149 + 0.833333 NA Intergenic Intergenic -41782 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 161.167-22 chr15 85356484 85356795 + 0.833333 NA Intergenic Intergenic -23957 NR_106993 102465803 NR_106993 ENSG00000284160 MIR7706 hsa-mir-7706 microRNA 7706 ncRNA 182.833-34 chr3 56967639 56967994 + 0.833333 NA intron (NM_001128615, intron 2 of 12) (ATATATA)n|Simple_repeat|Simple_repeat 27776 NR_046572 100874200 Hs.549631 NR_046572 ENSG00000240198 ARHGEF3-AS1 - ARHGEF3 antisense RNA 1 ncRNA 174.333-76 chr9 75742842 75743109 + 0.833333 NA Intergenic Intergenic -147669 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 212-31 chr4 162190993 162191395 + 0.833333 NA Intergenic L1M2|LINE|L1 -27160 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 269.833-6 chr11 93780210 93780800 + 0.833333 NA Intergenic AluSx1|SINE|Alu -3777 NM_004268 9440 Hs.444931 NM_004268 ENSG00000042429 MED17 CRSP6|CRSP77|DRIP80|SRB4|TRAP80 mediator complex subunit 17 protein-coding 116.667-64 chr20 53426759 53426999 + 0.833333 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -125891 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 160.833-33 chr3 121089165 121089418 + 0.833333 NA intron (NR_145517, intron 5 of 8) L1MD2|LINE|L1 39651 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 182-53 chr7 48868869 48869175 + 0.833333 NA Intergenic Intergenic -55525 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 189.5-15 chr14 52003430 52003716 + 0.833333 NA intron (NM_016039, intron 6 of 7) intron (NM_016039, intron 6 of 7) 14027 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 126-8 chr1 224395221 224395543 + 0.833333 NA intron (NM_025160, intron 12 of 13) intron (NM_025160, intron 12 of 13) 2929 NR_039896 100616468 NR_039896 ENSG00000266618 MIR4742 mir-4742 microRNA 4742 ncRNA 295.333-17 chr6 71580538 71581079 + 0.833333 NA Intergenic Intergenic 159781 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 151-59 chr5 3490084 3490379 + 0.833333 NA intron (NR_033898, intron 2 of 4) intron (NR_033898, intron 2 of 4) 13773 NR_104618 102467075 Hs.652949 NR_104618 ENSG00000250716 LINC01017 - long intergenic non-protein coding RNA 1017 ncRNA 170-23 chr15 81603237 81603647 + 0.833333 NA Intergenic Arthur1|DNA|hAT-Tip100 -229229 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 179.333-41 chr3 190441436 190441745 + 0.833333 NA intron (NM_207316, intron 2 of 4) intron (NM_207316, intron 2 of 4) 8286 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 114.333-123 chr8 120614506 120614713 + 0.833333 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) -146644 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 309.5-2 chr11 82340038 82340468 + 0.833333 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 63660 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 166.333-70 chr6 143458241 143458498 + 0.833333 NA intron (NM_003630, intron 1 of 11) intron (NM_003630, intron 1 of 11) 7564 NM_003630 8504 Hs.7277 NM_003630 ENSG00000034693 PEX3 PBD10A|PBD10B|TRG18 peroxisomal biogenesis factor 3 protein-coding 122.167-5 chr10 34273122 34273354 + 0.833333 NA intron (NM_001184789, intron 19 of 22) L1MD1|LINE|L1 -500558 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 175.833-47 chr9 29405485 29405798 + 0.833333 NA Intergenic L1M5|LINE|L1 -192040 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 159.5-29 chr20 33024768 33025084 + 0.833333 NA Intergenic Intergenic -6722 NM_174897 128859 Hs.375090 NM_174897 ENSG00000167104 BPIFB6 BPIL3|LPLUNC6 BPI fold containing family B member 6 protein-coding 394.167-3 chr9 28733970 28734570 + 0.833333 NA intron (NM_001354574, intron 2 of 5) MER44B|DNA|TcMar-Tigger -14965 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 267.333-4 chr10 55385175 55385580 + 0.833333 NA intron (NM_001354404, intron 2 of 34) MLT1F1|LTR|ERVL-MaLR -213665 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 210.667-28 chr20 54529628 54530074 + 0.833333 NA intron (NM_018431, intron 1 of 7) L1MB7|LINE|L1 54258 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 334.833 chr12 42582229 42582806 + 0.833333 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) 7229 NM_153026 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 216.167-31 chr8 125781177 125781544 + 0.833333 NA Intergenic Intergenic 169837 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 140.167-73 chr9 12531000 12531216 + 0.833333 NA Intergenic Intergenic -162277 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 134.333-29 chr12 106273652 106273834 + 0.833333 NA Intergenic AluSz|SINE|Alu -25723 NM_006825 10970 Hs.74368 NM_006825 ENSG00000136026 CKAP4 CLIMP-63|ERGIC-63|p63 cytoskeleton associated protein 4 protein-coding 186.333-34 chr2 70539594 70539860 + 0.833333 NA intron (NM_003236, intron 1 of 5) AluSx1|SINE|Alu 13719 NM_001308159 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 127.167-5 chr1 100832303 100832611 + 0.833333 NA Intergenic Intergenic 62385 NM_001033025 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 280.833-2 chr16 7336939 7337340 + 0.833333 NA intron (NM_145893, intron 1 of 13) MIR1_Amn|SINE|MIR 4294 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 179.167-44 chr7 14715451 14715925 + 0.833333 NA intron (NM_001350717, intron 6 of 24) MER6B|DNA|TcMar-Tigger 125762 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 155.333-46 chr2 42073811 42074114 + 0.833333 NA Intergenic Intergenic 25941 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 186.667-66 chr5 26259575 26260054 + 0.833333 NA Intergenic Intergenic 778772 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 289.334-2 chr2 210977352 210978133 + 0.833333 NA Intergenic Intergenic 360171 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 145.833-67 chr5 109157013 109157398 + 0.833333 NA intron (NR_146155, intron 17 of 19) intron (NR_146155, intron 17 of 19) 169164 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 184-16 chr14 63306237 63306568 + 0.833333 NA Intergenic L1PB1|LINE|L1 12533 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 171.833-11 chr11 87115716 87115923 + 0.833333 NA intron (NM_001168724, intron 4 of 13) intron (NM_001168724, intron 4 of 13) 77885 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 158.167-5 chr12 27238186 27238558 + 0.833333 NA Intergenic Intergenic -5914 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 152.167-2 chr1 79272057 79272347 + 0.833333 NA Intergenic L1PA12|LINE|L1 -265472 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 152.167-46 chr4 38582158 38582367 + 0.833333 NA Intergenic Intergenic 18259 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 189.333-11 chr14 69232519 69232771 + 0.833333 NA intron (NM_001193360, intron 5 of 9) L1M4|LINE|L1 -27513 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 188.333-34 chr22 49320081 49320425 + 0.833333 NA Intergenic L1MB8|LINE|L1 223213 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 208.834-3 chr10 92268867 92269546 + 0.833333 NA intron (NM_014912, intron 1 of 9) LTR16|LTR|ERVL 21872 NM_014912 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 199.667-20 chr16 88629330 88629802 + 0.833333 NA intron (NM_001294340, intron 17 of 18) Charlie1b|DNA|hAT-Charlie -9006 NM_013278 27189 Hs.278911 NM_013278 ENSG00000124391 IL17C CX2|IL-17C interleukin 17C protein-coding 116-86 chr7 37523583 37523773 + 0.833333 NA Intergenic Intergenic -74352 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 127.5-2 chr1 11144516 11144782 + 0.833333 NA exon (NM_004958, exon 34 of 58) exon (NM_004958, exon 34 of 58) 751 NR_046600 100873935 Hs.679133 NR_046600 ENSG00000225602 MTOR-AS1 - MTOR antisense RNA 1 ncRNA 127.167-17 chr10 81275641 81275808 + 0.833333 NA Intergenic Intergenic -599470 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 253.833-8 chr21 29432170 29432758 + 0.833333 NA Intergenic AluSx1|SINE|Alu 59963 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 154-55 chr3 119943241 119943474 + 0.833333 NA intron (NM_002093, intron 3 of 11) intron (NM_002093, intron 3 of 11) 141291 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 129-62 chr3 196719538 196719827 + 0.833333 NA intron (NM_017861, intron 2 of 5) L1MEc|LINE|L1 7305 NM_017861 54965 Hs.223296 NM_017861 ENSG00000163964 PIGX PIG-X phosphatidylinositol glycan anchor biosynthesis class X protein-coding 181.833-26 chr2 77747985 77748366 + 0.833333 NA intron (NR_110288, intron 3 of 3) intron (NR_110288, intron 3 of 3) -167759 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 146.167-16 chr14 24758466 24758910 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -124498 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 253.333-7 chr12 84884701 84885284 + 0.833333 NA intron (NM_182767, intron 4 of 11) intron (NM_182767, intron 4 of 11) 27807 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 117.667-68 chr2 148177073 148177289 + 0.833333 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -155577 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 146-14 chr12 41612889 41613150 + 0.833333 NA Intergenic Charlie7|DNA|hAT-Charlie -151170 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 145.667-103 chr8 139589342 139589600 + 0.833333 NA Intergenic Intergenic 113652 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 221-17 chr2 49574001 49574704 + 0.833333 NA Intergenic Intergenic 399851 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 204.667-43 chr7 46538603 46538909 + 0.833333 NA Intergenic Intergenic 158366 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 167.833-30 chr2 125532531 125532894 + 0.833333 NA Intergenic Intergenic 585273 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 314.167-2 chr10 77623178 77623927 + 0.833333 NA intron (NM_001271519, intron 1 of 28) AluSz|SINE|Alu 14256 NM_001322829 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 201.5-26 chr3 166261761 166262016 + 0.833333 NA Intergenic Intergenic -424465 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 122.5-60 chr3 94405939 94406228 + 0.833333 NA Intergenic Intergenic 343022 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 165-66 chrX 85313622 85313879 + 0.833333 NA intron (NM_001307940, intron 9 of 15) L1PA7|LINE|L1 65915 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 177.333-24 chr15 92600470 92600796 + 0.833333 NA Intergenic Intergenic -28370 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 113.167-48 chr3 28307583 28307783 + 0.833333 NA intron (NM_001331186, intron 3 of 4) Looper|DNA|PiggyBac -41038 NM_001040432 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 119.167-47 chr2 127992833 127993101 + 0.833333 NA intron (NM_001330303, intron 12 of 19) intron (NM_001330303, intron 12 of 19) 34328 NM_001145928 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 209.833-18 chr4 375321 375745 + 0.833333 NA 3' UTR (NM_001348277, exon 2 of 2) 3' UTR (NM_001348277, exon 2 of 2) 25376 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 173.833-62 chr9 2264960 2265356 + 0.833333 NA Intergenic L1MEg|LINE|L1 106702 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 282.167-11 chr2 211225851 211226320 + 0.833333 NA Intergenic Intergenic 608514 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 184.167-4 chr1 180428069 180428369 + 0.833333 NA intron (NM_032360, intron 4 of 7) intron (NM_032360, intron 4 of 7) 10171 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 133.167-13 chr11 45883622 45883837 + 0.833333 NA TTS (NM_021117) TTS (NM_021117) -1922 NM_005456 9479 Hs.234249 NM_005456 ENSG00000121653 MAPK8IP1 IB1|JIP-1|JIP1|PRKM8IP mitogen-activated protein kinase 8 interacting protein 1 protein-coding 168.667-75 chr7 103616077 103616335 + 0.833333 NA intron (NM_005045, intron 20 of 64) intron (NM_005045, intron 20 of 64) -169999 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 142.667-44 chr2 40761908 40762111 + 0.833333 NA Intergenic Intergenic -249574 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 253.667-5 chr15 94063528 94064000 + 0.833333 NA intron (NR_120320, intron 2 of 8) intron (NR_120320, intron 2 of 8) 44174 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 138.833-60 chr4 30479461 30479852 + 0.833333 NA Intergenic MIRb|SINE|MIR -240713 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 336.167-5 chr6 61927321 61927963 + 0.833333 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 353512 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 310.833-6 chr7 83435897 83436329 + 0.833333 NA intron (NM_001178129, intron 4 of 16) intron (NM_001178129, intron 4 of 16) 205318 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 132.667-97 chr8 114939161 114939429 + 0.833333 NA Intergenic Intergenic 728718 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 125.667-50 chr2 4304342 4304501 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 330260 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 233.833-15 chr7 26940033 26940529 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR -75691 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 123-67 chr3 127858887 127859136 + 0.833333 NA Intergenic Intergenic -35761 NM_001003794 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 137.667-20 chr12 43546399 43546796 + 0.833333 NA intron (NM_025003, intron 2 of 38) intron (NM_025003, intron 2 of 38) 5606 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 223-28 chr5 106015405 106015842 + 0.833333 NA Intergenic Intergenic 916149 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 144.833-21 chr15 61001063 61001253 + 0.833333 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 228144 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 234.833-16 chr4 23242597 23243008 + 0.833333 NA Intergenic Intergenic 528713 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 285-3 chr14 72301784 72302390 + 0.833333 NA intron (NM_001370288, intron 2 of 16) MIRc|SINE|MIR -214733 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 131.833-46 chr3 76053596 76053909 + 0.833333 NA Intergenic Intergenic -268203 NM_001290210 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 139.5-57 chr5 143715969 143716213 + 0.833333 NA Intergenic Intergenic 36231 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 193.5-34 chr3 124095526 124095868 + 0.833333 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 990 NM_001322992 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 171.667-31 chr15 65754338 65754817 + 0.833333 NA intron (NM_005848, intron 3 of 31) L1MB8|LINE|L1 -35245 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 200.667-41 chr4 184056122 184056465 + 0.833333 NA Intergenic Intergenic 150986 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 190.833-9 chr12 52221472 52221730 + 0.833333 NA intron (NR_027358, intron 3 of 4) L1ME4c|LINE|L1 10671 NR_027358 283404 Hs.662443 NR_027358 ENSG00000258279 LINC00592 - long intergenic non-protein coding RNA 592 ncRNA 198-60 chr8 61853660 61853986 + 0.833333 NA Intergenic Intergenic -36016 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 264.833-3 chr1 236690015 236690431 + 0.833333 NA intron (NM_001278344, intron 1 of 22) intron (NM_001278344, intron 1 of 22) 3724 NM_001278343 88 Hs.498178 NM_001103 ENSG00000077522 ACTN2 CMD1AA|CMH23 actinin alpha 2 protein-coding 227.667-28 chr8 74129430 74129979 + 0.833333 NA Intergenic MLT1N2|LTR|ERVL-MaLR 138312 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 115.833-76 chr7 62653519 62653749 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 650422 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 263.167-4 chr16 81286160 81286564 + 0.833333 NA intron (NM_017429, intron 9 of 10) intron (NM_017429, intron 9 of 10) -28604 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 147.667-11 chr10 25465371 25465781 + 0.833333 NA intron (NM_020752, intron 4 of 10) intron (NM_020752, intron 4 of 10) -186136 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 130-103 chr9 29141450 29141736 + 0.833333 NA intron (NM_001354574, intron 1 of 5) L1M4|LINE|L1 70706 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 211.5-36 chr9 37326597 37327073 + 0.833333 NA intron (NR_110317, intron 4 of 7) intron (NR_110317, intron 4 of 7) -95861 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 231.167-21 chr4 23908745 23909071 + 0.833333 NA intron (NM_001330752, intron 2 of 13) intron (NM_001330752, intron 2 of 13) -18861 NM_013261 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 126.167-86 chr7 133826022 133826228 + 0.833333 NA intron (NM_021807, intron 11 of 17) intron (NM_021807, intron 11 of 17) -1237 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 231-13 chr18 5835855 5836262 + 0.833333 NA Intergenic LTR51|LTR|ERV1 -4637 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 121.833-78 chr9 103531602 103531905 + 0.833333 NA Intergenic Intergenic -206720 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 113.833-16 chr13 34197784 34197964 + 0.833333 NA Intergenic Intergenic -150169 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 212.167-9 chr2 134770705 134771036 + 0.833333 NA Intergenic MER41E|LTR|ERV1 -51870 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 131.167-30 chr16 65979656 65979882 + 0.833333 NA Intergenic L2-1_AMi|LINE|L2 -386922 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 221.333-29 chr8 73314650 73315046 + 0.833333 NA intron (NR_125388, intron 5 of 5) intron (NR_125388, intron 5 of 5) 20246 NM_172037 157506 Hs.244940 NM_172037 ENSG00000121039 RDH10 SDR16C4 retinol dehydrogenase 10 protein-coding 208.5-4 chr1 96547138 96547409 + 0.833333 NA Intergenic Intergenic -173148 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 319.833 chr1 98388273 98388714 + 0.833333 NA Intergenic Intergenic 177782 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 174.333-63 chr8 38435960 38436325 + 0.833333 NA intron (NM_015850, intron 2 of 17) AluJr|SINE|Alu 31582 NM_001174066 2260 Hs.264887 NM_015850 ENSG00000077782 FGFR1 BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 163.833-52 chr7 18443391 18443636 + 0.833333 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) -52197 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 136.833-77 chr8 83247930 83248186 + 0.833333 NA Intergenic L1MEf|LINE|L1 -155700 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 151.167-7 chr10 79436868 79437073 + 0.833333 NA intron (NM_153367, intron 1 of 3) intron (NM_153367, intron 1 of 3) 8654 NM_153367 219654 Hs.523080 NM_153367 ENSG00000165424 ZCCHC24 C10orf56|Z3CXXC8 zinc finger CCHC-type containing 24 protein-coding 176.5-42 chr3 48830474 48830708 + 0.833333 NA intron (NM_001321982, intron 1 of 11) MER1A|DNA|hAT-Charlie 17283 NM_001321982 5576 Hs.631923 NM_004157 ENSG00000114302 PRKAR2A PKR2|PRKAR2 protein kinase cAMP-dependent type II regulatory subunit alpha protein-coding 154.667-38 chr2 68754943 68755290 + 0.833333 NA intron (NM_001364821, intron 1 of 10) intron (NM_001364821, intron 1 of 10) 19739 NM_001364821 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 128.167-8 chr10 113357290 113357497 + 0.833333 NA Intergenic Intergenic -193438 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 151.667-64 chr5 24287696 24288181 + 0.833333 NA Intergenic L1M5|LINE|L1 336590 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 340.5-6 chr8 124291743 124292317 + 0.833333 NA Intergenic AluSq2|SINE|Alu -44632 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 361.833-2 chr8 124115658 124116207 + 0.833333 NA intron (NM_001039112, intron 39 of 40) (TGCTA)n|Simple_repeat|Simple_repeat 55590 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 274-5 chr2 47816610 47817423 + 0.833333 NA intron (NM_025133, intron 16 of 22) Tigger1|DNA|TcMar-Tigger 33061 NM_001281494 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 163.667-12 chr10 107878507 107878828 + 0.833333 NA intron (NR_125760, intron 4 of 4) MER31-int|LTR|ERV1 190626 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 237.833-9 chr3 168977773 168978198 + 0.833333 NA Intergenic OldhAT1|DNA|hAT-Ac 76040 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 119.833-42 chr2 80376335 80376523 + 0.833333 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 63050 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 135.833-35 chr2 101064633 101064899 + 0.833333 NA intron (NM_001102426, intron 2 of 19) intron (NM_001102426, intron 2 of 19) 62477 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 282-18 chr4 45127334 45127901 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR -400983 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 179.667-37 chr3 146989263 146989632 + 0.833333 NA Intergenic Intergenic 67524 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 137.333-43 chr19 30615821 30616199 + 0.833333 NA intron (NM_001352260, intron 4 of 5) L1ME4b|LINE|L1 243626 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 169.333-34 chr2 47294791 47295037 + 0.833333 NA intron (NR_110207, intron 1 of 2) AluSx|SINE|Alu -40401 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 123.167-100 chr9 71384040 71384510 + 0.833333 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 62696 NM_001366141 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 121.667-28 chr15 69952641 69952928 + 0.833333 NA Intergenic L1ME3G|LINE|L1 117550 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 211.167-32 chr7 33172717 33173219 + 0.833333 NA intron (NM_198428, intron 4 of 22) MER57A-int|LTR|ERV1 43404 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 178.5-47 chr20 10140078 10140424 + 0.833333 NA intron (NR_040710, intron 2 of 4) intron (NR_040710, intron 2 of 4) -78547 NM_003081 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 235.333-5 chr13 90685462 90685800 + 0.833333 NA Intergenic Intergenic 192343 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 142.167-84 chr8 139093195 139093452 + 0.833333 NA Intergenic Intergenic -179282 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 151.667-38 chr2 44513439 44513788 + 0.833333 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 151666 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 201.833-21 chr6 152293107 152293539 + 0.833333 NA intron (NM_182961, intron 95 of 145) intron (NM_182961, intron 95 of 145) -87207 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 128.333-73 chr20 11065701 11066026 + 0.833333 NA Intergenic Intergenic 39319 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 183.167-41 chr5 8009143 8009447 + 0.833333 NA Intergenic Intergenic 140147 NR_157171 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 122-68 chr5 115933424 115933654 + 0.833333 NA Intergenic Intergenic -23032 NR_157226 107986443 NR_157226 LINCADL LINC-ADAL lincRNA adipogenesis and lipogenesis associated ncRNA 225-6 chr11 21079404 21079698 + 0.833333 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 409965 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 181-28 chr17 76644484 76644837 + 0.833333 NA promoter-TSS (NM_018414) promoter-TSS (NM_018414) -903 NM_018414 55808 Hs.105352 NM_018414 ENSG00000070526 ST6GALNAC1 HSY11339|SIAT7A|ST6GalNAcI|STYI ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 protein-coding 132.5-102 chr8 135898623 135899065 + 0.833333 NA Intergenic AluJr|SINE|Alu 441388 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 130.833-53 chr4 94948008 94948241 + 0.833333 NA intron (NM_001203, intron 2 of 12) MIRb|SINE|MIR -48108 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 143.833-49 chr7 122536002 122536310 + 0.833333 NA intron (NM_001167940, intron 8 of 29) intron (NM_001167940, intron 8 of 29) 162961 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 126.333-115 chr9 88822137 88822475 + 0.833333 NA Intergenic L1MD2|LINE|L1 -76401 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 161.167-65 chrX 101985194 101985406 + 0.833333 NA Intergenic L1M4|LINE|L1 -53273 NM_001282401 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 247.167-2 chr1 239345075 239345566 + 0.833333 NA Intergenic Intergenic -41248 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 242.833-9 chr5 10099331 10099703 + 0.833333 NA Intergenic L1M7|LINE|L1 150371 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 120-60 chr2 186632057 186632299 + 0.833333 NA intron (NM_002210, intron 5 of 29) intron (NM_002210, intron 5 of 29) 31973 NM_001144999 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 277-10 chr22 27572386 27573083 + 0.833333 NA Intergenic MLT1F|LTR|ERVL-MaLR 229022 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 163.833-54 chr7 104584985 104585289 + 0.833333 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 218955 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 259.5-12 chr3 88538471 88538963 + 0.833333 NA Intergenic Intergenic 200261 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 192-32 chr4 93416726 93417057 + 0.833333 NA intron (NM_001286838, intron 8 of 14) intron (NM_001286838, intron 8 of 14) -411862 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 124.667-80 chr3 125113346 125113613 + 0.833333 NA intron (NM_001195483, intron 7 of 12) L2b|LINE|L2 38073 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 150.833-8 chr12 117898725 117898923 + 0.833333 NA intron (NM_173598, intron 1 of 19) L1MA1|LINE|L1 70166 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 320.5-5 chr2 213137747 213138205 + 0.833333 NA intron (NM_001371277, intron 3 of 6) intron (NM_001371277, intron 3 of 6) 12461 NM_016260 22807 Hs.604950 NM_016260 ENSG00000030419 IKZF2 ANF1A2|HELIOS|ZNF1A2|ZNFN1A2 IKAROS family zinc finger 2 protein-coding 135.333-38 chr2 30098492 30098725 + 0.833333 NA Intergenic MER57B2|LTR|ERV1 -48399 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 176.833-18 chr2 182369642 182370054 + 0.833333 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) 57200 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 163.5-73 chr8 81340100 81340448 + 0.833333 NA Intergenic Intergenic 59738 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 116.833-60 chr7 84196837 84197157 + 0.833333 NA Intergenic Intergenic -2208 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 151.833-50 chr6 44121684 44122062 + 0.833333 NA intron (NM_001318767, intron 1 of 2) AluSx|SINE|Alu 4394 NM_001318770 64928 Hs.311190 NM_032111 ENSG00000180992 MRPL14 L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32 mitochondrial ribosomal protein L14 protein-coding 183.5-41 chr22 25697711 25697931 + 0.833333 NA intron (NM_001362778, intron 12 of 19) L3|LINE|CR1 -44367 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 252.333-21 chr6 80755186 80755585 + 0.833333 NA Intergenic L1PA15|LINE|L1 648714 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 315.834-8 chr9 21124819 21125522 + 0.833333 NA Intergenic Intergenic 16731 NM_002177 3467 Hs.73010 NM_002177 ENSG00000177047 IFNW1 - interferon omega 1 protein-coding 201.833-22 chr7 50699650 50700027 + 0.833333 NA intron (NM_001371009, intron 2 of 15) L1ME4a|LINE|L1 5463 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 116.333-5 chr1 76224411 76224637 + 0.833333 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 149778 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 149.833-67 chr9 116215870 116216181 + 0.833333 NA intron (NM_002581, intron 4 of 21) intron (NM_002581, intron 4 of 21) 62234 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 146-10 chr11 114528573 114528883 + 0.833333 NA intron (NM_152315, intron 3 of 5) intron (NM_152315, intron 3 of 5) 31153 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 119.833-40 chr2 58577535 58577715 + 0.833333 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 56872 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 133.333-61 chr2 216971434 216971749 + 0.833333 NA Intergenic Intergenic 100819 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 136.333-61 chr3 94157252 94157448 + 0.833333 NA Intergenic Intergenic 94289 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 238.833-10 chr4 44468032 44468578 + 0.833333 NA Intergenic A-rich|Low_complexity|Low_complexity -19496 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 355.167-5 chr4 87825574 87826082 + 0.833333 NA intron (NM_001184694, intron 1 of 3) L1PA11|LINE|L1 4430 NM_001184694 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 126.667-103 chr8 108998990 108999164 + 0.833333 NA Intergenic Intergenic -87551 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 190.167-20 chr16 72673596 72673894 + 0.833333 NA Intergenic L1MB4|LINE|L1 -8775 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 138.333-25 chr13 33836647 33836859 + 0.833333 NA 3' UTR (NM_002915, exon 9 of 9) 3' UTR (NM_002915, exon 9 of 9) 18604 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 176-42 chr7 50875118 50875723 + 0.833333 NA Intergenic L1PA3|LINE|L1 -81967 NM_001371008 250.5-27 chrX 91388751 91389626 + 0.833333 NA Intergenic L1MA3|LINE|L1 -45651 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 212.333-9 chr12 117142325 117142782 + 0.833333 NA 3' UTR (NM_033624, exon 12 of 12) 3' UTR (NM_033624, exon 12 of 12) 43086 NR_120464 101928244 Hs.742266 NR_120464 TESC-AS1 - TESC antisense RNA 1 (head to head) ncRNA 163.667-14 chr11 88406398 88406774 + 0.833333 NA Intergenic Intergenic -68850 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 178.167-4 chr10 63063511 63063803 + 0.833333 NA Intergenic Intergenic -69590 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 220.667-21 chr22 47516348 47516809 + 0.833333 NA Intergenic Intergenic -29467 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 208.5-26 chr2 126585466 126585820 + 0.833333 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -70292 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 142-11 chr10 21845263 21845530 + 0.833333 NA intron (NM_022365, intron 8 of 11) AluSg|SINE|Alu 158334 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 181.333-47 chr5 86162377 86162828 + 0.833333 NA Intergenic Intergenic -119842 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 141.5-18 chr12 19520978 19521301 + 0.833333 NA 3' UTR (NM_153207, exon 8 of 8) 3' UTR (NM_153207, exon 8 of 8) 80540 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 145.833-31 chr17 61365524 61365752 + 0.833333 NA intron (NR_136397, intron 1 of 2) intron (NR_136397, intron 1 of 2) 2066 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 171-37 chr3 123091816 123092053 + 0.833333 NA intron (NM_006810, intron 2 of 16) intron (NM_006810, intron 2 of 16) 24909 NM_006810 10954 Hs.477352 NM_006810 ENSG00000065485 PDIA5 PDIR protein disulfide isomerase family A member 5 protein-coding 152.333 chr1 76685877 76686135 + 0.833333 NA Intergenic Intergenic 93261 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 132.667-19 chr11 102599321 102599626 + 0.833333 NA intron (NM_004771, intron 6 of 9) MIRc|SINE|MIR 25859 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 186.5-41 chr2 148075298 148075540 + 0.833333 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -53815 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 292-15 chr8 131395253 131395628 + 0.833333 NA Intergenic MER44C|DNA|TcMar-Tigger -354531 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 176-35 chr5 51240478 51240880 + 0.833333 NA Intergenic Intergenic 142653 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 117.667-123 chr8 128209834 128210078 + 0.833333 NA Intergenic Intergenic 59840 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 151.333-57 chr21 31103026 31103239 + 0.833333 NA Intergenic Intergenic 57808 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 152.333-64 chr8 16005106 16005343 + 0.833333 NA Intergenic Charlie17a|DNA|hAT-Charlie 181048 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 245-16 chr6 96592938 96593337 + 0.833333 NA intron (NM_020482, intron 2 of 6) L1MEg|LINE|L1 30012 NM_001322467 9457 Hs.632608 NM_020482 ENSG00000112214 FHL5 1700027G07Rik|ACT|FHL-5|dJ393D12.2 four and a half LIM domains 5 protein-coding 147.833-49 chr3 171985553 171985787 + 0.833333 NA Intergenic L2a|LINE|L2 -53908 NM_022763 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 155.833-5 chr1 157484792 157485127 + 0.833333 NA Intergenic L1M5|LINE|L1 67556 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 137-13 chr10 86414928 86415216 + 0.833333 NA Intergenic AluY|SINE|Alu -48277 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 254.834-7 chr5 42668898 42669831 + 0.833333 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) -87454 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 171.833-34 chr4 47035049 47035303 + 0.833333 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 3609 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 199.167-28 chr4 40625904 40626257 + 0.833333 NA intron (NM_001371114, intron 1 of 5) intron (NM_001371114, intron 1 of 5) 3784 NM_001098634 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 154.833-58 chr8 81853386 81853800 + 0.833333 NA Intergenic MLT1O|LTR|ERVL-MaLR -11307 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 266.167-8 chr12 127923961 127924340 + 0.833333 NA intron (NR_046392, intron 1 of 4) MIRb|SINE|MIR 8740 NR_046392 100862680 Hs.385496 NR_046392 ENSG00000256193 LINC00507 - long intergenic non-protein coding RNA 507 ncRNA 234-12 chr15 60501088 60501471 + 0.833333 NA intron (NM_134260, intron 9 of 11) intron (NM_134260, intron 9 of 11) 22101 NR_120339 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 225.167-12 chr2 170232541 170232898 + 0.833333 NA intron (NM_001083615, intron 6 of 33) MIRb|SINE|MIR 54572 NM_001083615 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 203.833-3 chr11 32800093 32800539 + 0.833333 NA Intergenic Intergenic -5658 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 219-7 chr14 33101305 33101795 + 0.833333 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 162671 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 170.667-21 chr15 67288093 67288588 + 0.833333 NA intron (NM_001322475, intron 3 of 17) L1PA13|LINE|L1 -33142 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 297.667-8 chr8 120357192 120357577 + 0.833333 NA intron (NM_021110, intron 45 of 47) MLT1F1|LTR|ERVL-MaLR 87766 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 215.333-29 chr20 52141460 52141956 + 0.833333 NA intron (NM_199427, intron 5 of 8) Tigger1|DNA|TcMar-Tigger -36224 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 137.5-91 chr7 96954302 96954554 + 0.833333 NA Intergenic Intergenic -51125 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 150.333-24 chr11 80940444 80940926 + 0.833333 NA Intergenic Intergenic -177882 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 183.833-20 chr19 34407665 34408181 + 0.833333 NA intron (NM_001353433, intron 3 of 6) AluJr|SINE|Alu 3524 NM_032346 84306 Hs.515344 NM_032346 ENSG00000126249 PDCD2L - programmed cell death 2 like protein-coding 267.5-4 chr12 126932201 126932669 + 0.833333 NA intron (NR_104646, intron 4 of 6) intron (NR_104646, intron 4 of 6) -57745 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 186.833-32 chr4 81424159 81424393 + 0.833333 NA Intergenic Intergenic 47631 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 141-8 chr10 58892569 58892953 + 0.833333 NA Intergenic Intergenic -106757 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 141.667-25 chr14 46372442 46372936 + 0.833333 NA intron (NR_102702, intron 3 of 3) L1PA8A|LINE|L1 -98670 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 168.5-19 chr16 10025578 10026065 + 0.833333 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 156246 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 319.667-13 chr4 48334550 48334949 + 0.833333 NA Intergenic Intergenic -6780 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 206.5-40 chr9 34094923 34095177 + 0.833333 NA intron (NM_015397, intron 6 of 8) Tigger4b|DNA|TcMar-Tigger 31648 NM_015397 25853 Hs.493750 NM_015397 ENSG00000198876 DCAF12 CT102|KIAA1892|TCC52|WDR40A DDB1 and CUL4 associated factor 12 protein-coding 183.5-53 chr6 52012997 52013305 + 0.833333 NA intron (NM_138694, intron 34 of 66) L3|LINE|CR1 74462 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 148.833-16 chr14 30790954 30791148 + 0.833333 NA Intergenic AluJr|SINE|Alu -83484 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 178.5-73 chr8 92686210 92686520 + 0.833333 NA Intergenic Intergenic -30871 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 142.333-78 chr4 38589175 38589546 + 0.833333 NA Intergenic MLT1F|LTR|ERVL-MaLR 25357 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 114.667-36 chr17 9302021 9302176 + 0.833333 NA intron (NM_004853, intron 7 of 7) L1M5|LINE|L1 -122980 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 188.333-56 chr7 43139775 43140194 + 0.833333 NA intron (NR_135295, intron 3 of 6) MIRb|SINE|MIR -10911 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 266.167-2 chr1 79617664 79618196 + 0.833333 NA Intergenic LTR47A|LTR|ERVL -611200 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 180.167-49 chr6 139982422 139982812 + 0.833333 NA intron (NR_121624, intron 1 of 2) intron (NR_121624, intron 1 of 2) 6298 NR_121622 100507477 Hs.179213 NR_121622 ENSG00000236013 LOC100507477 - uncharacterized LOC100507477 ncRNA 174.167-34 chr6 104716088 104716348 + 0.833333 NA Intergenic L1MEd|LINE|L1 143328 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 172-69 chr8 128166832 128167191 + 0.833333 NA Intergenic MIR3|SINE|MIR 16895 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 176.333-18 chr12 64019892 64020201 + 0.833333 NA intron (NM_001346201, intron 4 of 21) intron (NM_001346201, intron 4 of 21) 175346 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 137.5-31 chr14 69015699 69015946 + 0.833333 NA Intergenic AluSc|SINE|Alu 36140 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 185.833-36 chr8 140449208 140449715 + 0.833333 NA intron (NM_001160372, intron 2 of 22) intron (NM_001160372, intron 2 of 22) 8283 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 122.5-72 chr5 91351237 91351497 + 0.833333 NA Intergenic MER102b|DNA|hAT-Charlie 28730 NM_001329671 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 222.833-7 chr16 87116509 87117062 + 0.833333 NA Intergenic MADE2|DNA|TcMar-Mariner 59001 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 181.5-47 chr5 40148340 40148748 + 0.833333 NA Intergenic Intergenic 96253 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 135.167-82 chr7 7789524 7789970 + 0.833333 NA intron (NM_001302350, intron 3 of 4) L1MB2|LINE|L1 -71140 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 225.5-4 chr10 10297079 10297475 + 0.833333 NA Intergenic L1PA16|LINE|L1 165072 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 177.167-2 chr10 58649363 58649712 + 0.833333 NA intron (NM_001080512, intron 2 of 20) LTR78B|LTR|ERV1 -65478 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 172.5-10 chr10 113655978 113656292 + 0.833333 NA intron (NM_001322945, intron 4 of 40) MER4B|LTR|ERV1 7906 NM_001322945 4892 Hs.268788 NM_006175 ENSG00000197893 NRAP N-RAP nebulin related anchoring protein protein-coding 135.667-5 chr1 173666893 173667229 + 0.833333 NA intron (NM_198493, intron 1 of 5) Charlie1|DNA|hAT-Charlie 2790 NR_158771 339416 Hs.130054 NM_198493 ENSG00000183831 ANKRD45 CT117 ankyrin repeat domain 45 protein-coding 153.667-77 chr8 86166528 86166779 + 0.833333 NA Intergenic Intergenic 63728 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 205.834 chr10 44522482 44523205 + 0.833333 NA Intergenic L1PA5|LINE|L1 -137746 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 191-33 chr2 77917724 77917985 + 0.833333 NA non-coding (NR_110286, exon 3 of 3) non-coding (NR_110286, exon 3 of 3) 1920 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 260.833-19 chrY 56828455 56829084 + 0.833333 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat -125486 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 211.667-36 chr6 120704120 120704437 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger 630202 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 179.167-39 chr5 130946678 130947044 + 0.833333 NA Intergenic L1M3|LINE|L1 218395 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 221.5-33 chr7 89394770 89395118 + 0.833333 NA Intergenic Intergenic -599207 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 195.667-47 chr8 137505363 137505878 + 0.833333 NA Intergenic MLT1J2|LTR|ERVL-MaLR -92032 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 207.667-27 chr20 51414697 51415124 + 0.833333 NA intron (NM_012340, intron 9 of 10) intron (NM_012340, intron 9 of 10) 38067 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 196.333-36 chr5 15608578 15608911 + 0.833333 NA intron (NR_109945, intron 1 of 2) MLT2C1|LTR|ERVL 6258 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 271.166 chr8 13481142 13481812 + 0.833333 NA intron (NM_024767, intron 2 of 4) (AATA)n|Simple_repeat|Simple_repeat 33374 NM_182643 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 209.5-6 chr11 131792854 131793336 + 0.833333 NA intron (NM_001352006, intron 2 of 9) intron (NM_001352006, intron 2 of 9) -116829 NR_147849 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 336.5-5 chr6 126523873 126524346 + 0.833333 NA Intergenic Intergenic 39478 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 135.5-42 chr2 60684513 60684713 + 0.833333 NA Intergenic GA-rich|Low_complexity|Low_complexity -71655 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 135.5-60 chr4 87313637 87313929 + 0.833333 NA intron (NM_178135, intron 5 of 6) intron (NM_178135, intron 5 of 6) 9099 NM_001136230 345275 Hs.284414 NM_178135 ENSG00000170509 HSD17B13 HMFN0376|NIIL497|SCDR9|SDR16C3 hydroxysteroid 17-beta dehydrogenase 13 protein-coding 196-40 chr20 54545439 54545791 + 0.833333 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 70022 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 130.833 chr1 10388555 10388804 + 0.833333 NA Intergenic MIRc|SINE|MIR -10385 NM_001304452 5226 Hs.464071 NM_002631 ENSG00000142657 PGD 6PGD phosphogluconate dehydrogenase protein-coding 119.833-5 chr1 92812610 92812794 + 0.833333 NA Intergenic AluSx1|SINE|Alu -19284 NR_146333 6125 Hs.532359 NM_000969 ENSG00000122406 RPL5 L5|MSTP030|PPP1R135|uL18 ribosomal protein L5 protein-coding 139.167-3 chr1 109208646 109209071 + 0.833333 NA Intergenic Intergenic -5035 NM_001330669 6301 Hs.531176 NM_006513 ENSG00000031698 SARS NEDMAS|SERRS|SERS seryl-tRNA synthetase protein-coding 123.667-79 chr4 111656209 111656500 + 0.833333 NA Intergenic Intergenic -489100 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 243.667-6 chr10 63365285 63365737 + 0.833333 NA intron (NM_001322258, intron 2 of 24) AluSg7|SINE|Alu 7537 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 201.167-28 chr5 178677638 178677908 + 0.833333 NA Intergenic MER57A1|LTR|ERV1 -50723 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 141-19 chr12 90968546 90968773 + 0.833333 NA intron (NM_004950, intron 6 of 6) intron (NM_004950, intron 6 of 6) -13483 NM_152638 196477 Hs.128574 NM_152638 ENSG00000197651 CCER1 C12orf12 coiled-coil glutamate rich protein 1 protein-coding 122.833-74 chr5 144504187 144504452 + 0.833333 NA Intergenic MIRb|SINE|MIR 298928 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 129.833-49 chr4 74224373 74224612 + 0.833333 NA intron (NM_001144978, intron 5 of 7) L1M7|LINE|L1 66374 NM_001351314 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 243.167-19 chrX 30114642 30115125 + 0.833333 NA Intergenic Intergenic -100680 NM_002364 4113 Hs.113824 NM_002364 ENSG00000099399 MAGEB2 CT3.2|DAM6|MAGE-XP-2 MAGE family member B2 protein-coding 263.167-8 chr21 28375837 28376458 + 0.833333 NA Intergenic Intergenic -147480 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 313-8 chr7 82910524 82911333 + 0.833333 NA intron (NM_033026, intron 7 of 24) intron (NM_033026, intron 7 of 24) 251956 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 151.5-44 chr3 17894459 17894739 + 0.833333 NA Intergenic L1M1|LINE|L1 -67953 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 140.167-25 chr15 94942054 94942388 + 0.833333 NA Intergenic L1MA8|LINE|L1 86858 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 397.333-3 chr15 55329191 55329917 + 0.833333 NA intron (NM_004855, intron 4 of 11) intron (NM_004855, intron 4 of 11) 10332 NM_004855 9488 Hs.612814 NM_004855 ENSG00000069943 PIGB GPI-MT-III|PIG-B phosphatidylinositol glycan anchor biosynthesis class B protein-coding 189-4 chr11 95868821 95869331 + 0.833333 NA intron (NM_201281, intron 3 of 15) intron (NM_201281, intron 3 of 15) 55031 NM_201281 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 238-23 chr5 55034114 55034563 + 0.833333 NA 3' UTR (NM_002104, exon 5 of 5) 3' UTR (NM_002104, exon 5 of 5) 10082 NM_002104 3003 Hs.277937 NM_002104 ENSG00000113088 GZMK TRYP2 granzyme K protein-coding 144.333-91 chr8 130739358 130739588 + 0.833333 NA Intergenic L1PA16|LINE|L1 -295799 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 198-55 chr6 150739439 150739909 + 0.833333 NA intron (NM_001329803, intron 2 of 13) AluSz|SINE|Alu 18575 NM_001329801 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 154.667-39 chr2 144265748 144266168 + 0.833333 NA intron (NM_001354354, intron 1 of 12) intron (NM_001354354, intron 1 of 12) -17259 NR_148872 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 190.167-47 chr8 118416952 118417207 + 0.833333 NA intron (NM_001349811, intron 3 of 4) AluJr4|SINE|Alu -203922 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 143.833-52 chr8 62090721 62090974 + 0.833333 NA Intergenic Intergenic -158007 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 196.5-3 chr1 117891882 117892301 + 0.833333 NA intron (NM_001135589, intron 8 of 12) intron (NM_001135589, intron 8 of 12) 37530 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 114.333-2 chr1 40394991 40395234 + 0.833333 NA intron (NM_001198979, intron 1 of 9) intron (NM_001198979, intron 1 of 9) -1688 NM_001198980 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 214.5-24 chr21 30992154 30992546 + 0.833333 NA Intergenic Intergenic 46126 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 166-52 chr5 98196499 98196823 + 0.833333 NA Intergenic Intergenic -35422 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 191.5-8 chr10 114712421 114712739 + 0.833333 NA intron (NM_001322886, intron 1 of 20) MamRTE1|LINE|RTE-BovB -27577 NM_001322882 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 136.667-8 chr10 42533042 42533345 + 0.833333 NA intron (NR_026777, intron 5 of 7) L1M4c|LINE|L1 19677 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 144.167-49 chr3 125561535 125561833 + 0.833333 NA intron (NM_022776, intron 7 of 12) intron (NM_022776, intron 7 of 12) 33813 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 129.667-28 chr13 70024553 70025046 + 0.833333 NA intron (NM_020866, intron 1 of 10) Charlie2b|DNA|hAT-Charlie -82414 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 254.167-10 chr20 41463833 41464191 + 0.833333 NA intron (NM_032221, intron 17 of 36) L1MC4|LINE|L1 -97194 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 149.167-29 chr2 50805817 50806077 + 0.833333 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -109685 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 193.667-28 chr2 118400119 118400589 + 0.833333 NA Intergenic L1MA1|LINE|L1 202612 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 206.667-47 chr7 72164668 72165116 + 0.833333 NA intron (NM_001363460, intron 2 of 5) AluJr4|SINE|Alu 172499 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 188-63 chr8 63928440 63928883 + 0.833333 NA intron (NR_125826, intron 4 of 4) L1MEd|LINE|L1 159231 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 293.167-7 chr2 125290500 125290917 + 0.833333 NA Intergenic Intergenic 827277 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 202.667-39 chr6 131147639 131148073 + 0.833333 NA intron (NM_016377, intron 2 of 7) intron (NM_016377, intron 2 of 7) 12389 NM_016377 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 298.333-6 chr16 9753637 9754154 + 0.833333 NA 3' UTR (NM_000833, exon 14 of 14) 3' UTR (NM_000833, exon 14 of 14) -298390 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 190.333-39 chr20 54048111 54048512 + 0.833333 NA intron (NM_001366297, intron 3 of 8) intron (NM_001366297, intron 3 of 8) 10709 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 176.5-53 chr4 127062024 127062312 + 0.833333 NA Intergenic MER44B|DNA|TcMar-Tigger -570789 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 129.333-30 chr14 64516310 64516744 + 0.833333 NA intron (NR_110550, intron 3 of 3) intron (NR_110550, intron 3 of 3) -11314 NM_001304507 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 117.5-67 chr7 11898148 11898350 + 0.833333 NA Intergenic Intergenic -66051 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 192.667-9 chr10 51821510 51822045 + 0.833333 NA intron (NM_001098512, intron 4 of 17) L1M4|LINE|L1 -122182 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 233.667-24 chr6 24057864 24058312 + 0.833333 NA Intergenic Intergenic -68127 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 194.5-43 chr8 70329937 70330459 + 0.833333 NA intron (NM_001321703, intron 1 of 22) (ATG)n|Simple_repeat|Simple_repeat 73192 NM_001321713 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 164.833-29 chr22 25641247 25641601 + 0.833333 NA intron (NM_001362778, intron 2 of 19) L2a|LINE|L2 76749 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 130-77 chr4 112913972 112914260 + 0.833333 NA intron (NM_001354275, intron 2 of 43) MIR|SINE|MIR 53129 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 173-40 chr4 117744697 117744926 + 0.833333 NA Intergenic L1PA16|LINE|L1 -89590 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 157.333-34 chr2 43537328 43537751 + 0.833333 NA intron (NM_001083953, intron 21 of 37) intron (NM_001083953, intron 21 of 37) 58435 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 119.167-32 chr18 4462259 4462673 + 0.833333 NA Intergenic Intergenic -7159 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 207.333-31 chr20 41583785 41584286 + 0.833333 NA intron (NM_032221, intron 1 of 36) L1MEf|LINE|L1 34342 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 214.167-19 chr3 99406046 99406333 + 0.833333 NA Intergenic L1MA3|LINE|L1 -232405 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 128.333-95 chr5 57889175 57889425 + 0.833333 NA Intergenic Intergenic 9862 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 140-55 chr4 29281344 29281657 + 0.833333 NA Intergenic MER68C|LTR|ERVL 67208 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 204.333-5 chr10 59988067 59988388 + 0.833333 NA Intergenic L1MA3|LINE|L1 -27314 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 281.5-9 chr5 66024967 66025325 + 0.833333 NA intron (NM_001253697, intron 10 of 25) L2a|LINE|L2 -79573 NR_028474 100303749 Hs.608060 NR_028474 LOC100303749 - LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo 199.833-27 chr6 140584381 140584869 + 0.833333 NA Intergenic L1M2|LINE|L1 -99189 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 144.333-71 chr5 93008061 93008296 + 0.833333 NA Intergenic MIR|SINE|MIR 563165 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 271.167-8 chr17 63130482 63130844 + 0.833333 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 164428 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 157.333-62 chr5 127313890 127314260 + 0.833333 NA intron (NM_001308119, intron 2 of 14) intron (NM_001308119, intron 2 of 14) 23279 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 226.667-25 chr5 13003204 13003525 + 0.833333 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 29522 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 214.167-22 chr4 30328528 30328926 + 0.833333 NA Intergenic Intergenic -391642 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 202.167-14 chr15 98682520 98682905 + 0.833333 NA intron (NM_000875, intron 1 of 20) AluSx|SINE|Alu -31491 NR_126453 104472848 Hs.349049 NR_126453 IRAIN IGF1R-AS IGF1R antisense imprinted non-protein coding RNA ncRNA 292.167-2 chr18 1849380 1849804 + 0.833333 NA Intergenic Intergenic -489963 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 160-74 chr9 28260853 28261155 + 0.833333 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 458301 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 113.667-49 chr16 76239771 76240008 + 0.833333 NA Intergenic HAL1|LINE|L1 -37512 NM_001322179 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 154-68 chr7 12052791 12053036 + 0.833333 NA Intergenic Intergenic -158381 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 195.167-8 chr14 51963011 51963289 + 0.833333 NA intron (NM_001243773, intron 3 of 3) intron (NM_001243773, intron 3 of 3) -26396 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 208.667-2 chr1 63331346 63331719 + 0.833333 NA Intergenic Intergenic -4548 NR_106716 102464823 NR_106716 ENSG00000275836 MIR6068 hsa-mir-6068 microRNA 6068 ncRNA 157.833-45 chr22 43052109 43052361 + 0.833333 NA non-coding (NR_125362, exon 3 of 3) non-coding (NR_125362, exon 3 of 3) 13650 NR_125362 100506679 Hs.706553 NR_125362 ENSG00000230319 LOC100506679 - uncharacterized LOC100506679 ncRNA 119.167-60 chr3 47102206 47102360 + 0.833333 NA intron (NR_146158, intron 7 of 21) MIRb|SINE|MIR 61694 NM_014159 29072 Hs.517941 NM_012271 ENSG00000181555 SETD2 HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|SET2|p231HBP SET domain containing 2, histone lysine methyltransferase protein-coding 170.5-17 chr14 51877537 51877761 + 0.833333 NA 5' UTR (NM_053064, exon 2 of 4) 5' UTR (NM_053064, exon 2 of 4) 17037 NM_001243773 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 146.5-78 chr6 153997927 153998167 + 0.833333 NA Intergenic L1MEc|LINE|L1 -12449 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 129.333-105 chr8 129238515 129238823 + 0.833333 NA intron (NR_033916, intron 1 of 2) LTR78|LTR|ERV1 2571 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 167.833-47 chr5 147792114 147792420 + 0.833333 NA Intergenic Intergenic -9539 NM_014790 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 130.333-49 chr2 59510179 59510407 + 0.833333 NA Intergenic Intergenic 292585 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 171.167-12 chr10 98668808 98669154 + 0.833333 NA intron (NM_021828, intron 6 of 11) L1PA16|LINE|L1 -222018 NM_182639 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 268.5-20 chrX 78561901 78562307 + 0.833333 NA Intergenic L1PA10|LINE|L1 97224 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 128-23 chr12 70670051 70670450 + 0.833333 NA intron (NM_130846, intron 6 of 9) intron (NM_130846, intron 6 of 9) -32821 NM_001109754 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 189.833-7 chr14 59312077 59312458 + 0.833333 NA intron (NM_001270520, intron 3 of 24) intron (NM_001270520, intron 3 of 24) 48826 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 177.833-22 chr2 227281315 227281620 + 0.833333 NA intron (NM_000091, intron 31 of 51) A-rich|Low_complexity|Low_complexity 43697 NR_102371 654841 Hs.659982 NR_102371 ENSG00000236432 LOC654841 - uncharacterized LOC654841 ncRNA 139-22 chr17 72019128 72019313 + 0.833333 NA Intergenic MIRc|SINE|MIR 6759 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 224.833-14 chr6 41789828 41790179 + 0.833333 NA TTS (NM_001134493) TTS (NM_001134493) 2560 NM_001134493 100188893 Hs.731633 NM_001134493 ENSG00000214736 TOMM6 OBTP|TOM6 translocase of outer mitochondrial membrane 6 protein-coding 159.167-66 chr8 64443801 64444062 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 64782 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 176.667-36 chr2 80436849 80437254 + 0.833333 NA intron (NM_001282599, intron 3 of 11) MLT1A0|LTR|ERVL-MaLR 123672 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 181-30 chr18 7220812 7221418 + 0.833333 NA Intergenic L1MA6|LINE|L1 -9989 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 158.5-74 chr7 2184306 2184580 + 0.833333 NA intron (NM_001013837, intron 10 of 18) L1ME2|LINE|L1 48502 NM_001013836 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 140.667-2 chr1 75054002 75054247 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL -74310 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 185-29 chr2 228841915 228842319 + 0.833333 NA Intergenic Tigger3a|DNA|TcMar-Tigger -230722 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 143.333-27 chr17 58962272 58962471 + 0.833333 NA intron (NR_048561, intron 2 of 5) intron (NR_048561, intron 2 of 5) 144509 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 189-19 chr2 190896209 190896469 + 0.833333 NA intron (NM_014905, intron 3 of 17) intron (NM_014905, intron 3 of 17) 15518 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 174-24 chr14 76866248 76866549 + 0.833333 NA intron (NM_194287, intron 12 of 13) intron (NM_194287, intron 12 of 13) 39990 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 133-86 chr7 5215594 5215891 + 0.833333 NA intron (NM_016003, intron 3 of 11) Tigger13a|DNA|TcMar-Tigger 1473 NM_001033520 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 222.833-6 chr15 51028990 51029270 + 0.833333 NA Intergenic L1M1|LINE|L1 -8358 NR_146310 109729174 NR_146310 ENSG00000259240 MIR4713HG - MIR4713 host gene ncRNA 225-34 chr7 94614518 94614999 + 0.833333 NA intron (NM_001346717, intron 5 of 9) L2c|LINE|L2 41375 NM_001346713 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 152.167-78 chr8 135043960 135044311 + 0.833333 NA Intergenic L2c|LINE|L2 -189996 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 142-61 chr3 15828244 15828466 + 0.833333 NA intron (NM_001349279, intron 1 of 28) AluYh3|SINE|Alu -30171 NR_146111 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 212.833-5 chr14 70474563 70474892 + 0.833333 NA intron (NR_037933, intron 1 of 1) L1MA6|LINE|L1 9029 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 148-19 chr11 85834262 85834515 + 0.833333 NA Intergenic L1M5|LINE|L1 -20713 NM_173556 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 204.667-24 chr15 60994085 60994476 + 0.833333 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 235022 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 113.333-109 chr8 127310059 127310289 + 0.833333 NA intron (NR_117100, intron 5 of 5) L1M5|LINE|L1 65537 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 233.333-38 chr5 180535182 180535524 + 0.833333 NA intron (NR_163438, intron 2 of 10) L1PB4|LINE|L1 -6301 NM_001370474 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 234.5-8 chr13 22880491 22880906 + 0.833333 NA intron (NR_138043, intron 2 of 2) LTR2B|LTR|ERV1 17483 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 245.833-6 chr17 65921653 65922050 + 0.833333 NA intron (NM_001353129, intron 19 of 26) intron (NM_001353129, intron 19 of 26) -95308 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 114.667-47 chr2 60837057 60837287 + 0.833333 NA Intergenic Intergenic 44142 NR_033980 400957 Hs.170358 NR_033980 ENSG00000228414 LINC01185 - long intergenic non-protein coding RNA 1185 ncRNA 209-12 chr10 66907232 66907680 + 0.833333 NA non-coding (NR_111911, exon 5 of 7) non-coding (NR_111911, exon 5 of 7) -18580 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 129.833-41 chr22 39895093 39895343 + 0.833333 NA Intergenic Intergenic -1458 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 150.833-14 chr17 33329838 33330306 + 0.833333 NA intron (NM_001094, intron 1 of 9) MIR3|SINE|MIR -37084 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 288.5-2 chr10 55634210 55634693 + 0.833333 NA Intergenic Intergenic -6509 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 243.5 chr10 20837949 20838310 + 0.833333 NA intron (NM_006393, intron 13 of 27) Tigger1|DNA|TcMar-Tigger 59473 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 153.833-46 chr4 60838809 60839054 + 0.833333 NA Intergenic MER58C|DNA|hAT-Charlie -83688 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 199.5-10 chr12 32163700 32164139 + 0.833333 NA intron (NR_148725, intron 1 of 9) intron (NR_148725, intron 1 of 9) 57072 NR_148725 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 188-21 chr13 102827541 102828003 + 0.833333 NA intron (NM_001159596, intron 5 of 8) intron (NM_001159596, intron 5 of 8) -18069 NM_000123 2073 Hs.258429 NM_000123 ENSG00000134899 ERCC5 COFS3|ERCC5-201|ERCM2|UVDR|XPG|XPGC ERCC excision repair 5, endonuclease protein-coding 157-81 chr8 112309939 112310424 + 0.833333 NA intron (NM_001363185, intron 46 of 66) intron (NM_001363185, intron 46 of 66) -333312 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 163.833-47 chr6 51322193 51322460 + 0.833333 NA Intergenic L1PB1|LINE|L1 -299544 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 122.333-82 chr4 64306804 64307095 + 0.833333 NA intron (NM_001363796, intron 6 of 11) LTR25-int|LTR|ERV1 102501 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 143.5-37 chr2 14755108 14755450 + 0.833333 NA Intergenic L1MC1|LINE|L1 122562 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 145.667-36 chr15 91302225 91302510 + 0.833333 NA 3' UTR (NM_001323031, exon 13 of 13) 3' UTR (NM_001323031, exon 13 of 13) -160972 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 140.833-62 chr8 114341952 114342292 + 0.833333 NA Intergenic MER50B|LTR|ERV1 -905183 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 135.333-24 chr15 47367780 47367942 + 0.833333 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 183772 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 178-57 chr7 81226767 81227081 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie -304535 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 142.333-10 chr1 221584561 221584776 + 0.833333 NA Intergenic Intergenic 152232 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 291.667-2 chr1 102668005 102668398 + 0.833333 NA Intergenic MIR|SINE|MIR 440295 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 249.833-12 chr7 49708880 49709308 + 0.833333 NA Intergenic Intergenic -64544 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 127.167-15 chr10 42981517 42981743 + 0.833333 NA promoter-TSS (NR_126352) promoter-TSS (NR_126352) -123 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 151.5-68 chr7 46152268 46152501 + 0.833333 NA Intergenic L1ME1|LINE|L1 -231112 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 121-67 chr5 32848689 32848972 + 0.833333 NA Intergenic Intergenic -98613 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 227-21 chr4 157520974 157521415 + 0.833333 NA Intergenic Intergenic -51296 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 184.833-32 chr7 32055164 32055678 + 0.833333 NA intron (NM_001191059, intron 2 of 18) MIRb|SINE|MIR 14986 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 186-49 chr6 137970249 137970510 + 0.833333 NA Intergenic Intergenic -24579 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 124.333-48 chr2 147142067 147142311 + 0.833333 NA Intergenic L1MA9|LINE|L1 555132 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 296.667-3 chr1 246548243 246548771 + 0.833333 NA intron (NM_022366, intron 6 of 7) intron (NM_022366, intron 6 of 7) 17754 NM_022366 64216 Hs.7395 NM_022366 ENSG00000162851 TFB2M Hkp1|mtTFB2 transcription factor B2, mitochondrial protein-coding 157.833-54 chr5 56245808 56246094 + 0.833333 NA Intergenic Intergenic -12621 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 166.833-42 chr8 102262092 102262409 + 0.833333 NA intron (NM_001282873, intron 54 of 58) intron (NM_001282873, intron 54 of 58) 22799 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 191.667-58 chr9 27338988 27339381 + 0.833333 NA intron (NM_024761, intron 3 of 3) intron (NM_024761, intron 3 of 3) -42034 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 188.833-20 chr2 76342914 76343196 + 0.833333 NA Intergenic Intergenic -632140 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 123.167-24 chr12 70981145 70981307 + 0.833333 NA Intergenic Intergenic -60488 NM_002849 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 249.5-25 chr5 22907392 22907718 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR -54211 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 334.5-12 chr7 107600667 107601126 + 0.833333 NA intron (NR_163929, intron 6 of 7) intron (NR_163929, intron 6 of 7) 20650 NR_163930 235.5-21 chr2 194275095 194275780 + 0.833333 NA Intergenic Intergenic -68832 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 173.833-53 chr7 29016263 29016692 + 0.833333 NA intron (NM_001371256, intron 16 of 16) intron (NM_001371256, intron 16 of 16) 36510 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 277-13 chr5 59480300 59481044 + 0.833333 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 105826 NM_001349242 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 226.333-14 chr17 65184648 65185150 + 0.833333 NA intron (NM_003835, intron 9 of 18) AluJr|SINE|Alu 47529 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 249.667-12 chr14 66302970 66303477 + 0.833333 NA Intergenic Intergenic -183148 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 208.5-42 chr6 102571816 102572298 + 0.833333 NA Intergenic L1MB8|LINE|L1 1173072 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 138.333-16 chr10 67288799 67289064 + 0.833333 NA intron (NM_001127384, intron 5 of 17) AluJr4|SINE|Alu 114479 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 191.5-42 chr5 160159864 160160482 + 0.833333 NA Intergenic Intergenic -27208 NM_001130958 2172 Hs.519719 NM_001445 ENSG00000170231 FABP6 I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP fatty acid binding protein 6 protein-coding 370.5 chr12 40140747 40141573 + 0.833333 NA Intergenic Charlie1a|DNA|hAT-Charlie -15079 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 274.334-9 chr5 104770415 104771054 + 0.833333 NA Intergenic Intergenic -328740 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 137.833-36 chr5 62128284 62128611 + 0.833333 NA Intergenic Intergenic -177715 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 289.167-3 chr1 77046291 77046844 + 0.833333 NA intron (NM_030965, intron 3 of 4) intron (NM_030965, intron 3 of 4) -13576 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 136.333-50 chr2 160352783 160352955 + 0.833333 NA intron (NM_002897, intron 2 of 13) Charlie15b|DNA|hAT-Charlie 55013 NR_039946 100616364 NR_039946 ENSG00000283734 MIR4785 mir-4785 microRNA 4785 ncRNA 139.833-69 chr7 7763252 7763714 + 0.833333 NA intron (NM_001302350, intron 3 of 4) L1PA16|LINE|L1 -44876 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 158.333-51 chr3 50642569 50642808 + 0.833333 NA intron (NM_004635, intron 5 of 10) MIRb|SINE|MIR 25537 NM_001243925 7867 Hs.234521 NM_004635 ENSG00000114738 MAPKAPK3 3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3 MAPK activated protein kinase 3 protein-coding 176.833-22 chr3 131801555 131801813 + 0.833333 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) 184247 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 169.5-71 chr8 32795201 32795518 + 0.833333 NA Intergenic Intergenic 73524 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 119-81 chr5 28152826 28152987 + 0.833333 NA Intergenic Charlie4a|DNA|hAT-Charlie 134759 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 360.334 chr14 42490583 42491792 + 0.833333 NA Intergenic L1MA8|LINE|L1 884331 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 136-69 chr5 114737927 114738170 + 0.833333 NA intron (NR_130785, intron 1 of 12) intron (NR_130785, intron 1 of 12) 35365 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 242.667-29 chr8 128396354 128397015 + 0.833333 NA Intergenic Intergenic 167995 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 177.833-2 chr11 83196802 83197200 + 0.833333 NA intron (NM_001300975, intron 1 of 10) intron (NM_001300975, intron 1 of 10) 3289 NM_001300976 338699 Hs.503438 NM_182603 ENSG00000137494 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 157.667-75 chr9 78722913 78723241 + 0.833333 NA Intergenic Intergenic 422589 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 160.667-43 chr2 186188156 186188542 + 0.833333 NA Intergenic Intergenic -102032 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 156.833-29 chr20 32414269 32414487 + 0.833333 NA intron (NM_015338, intron 3 of 11) intron (NM_015338, intron 3 of 11) 55313 NM_001363734 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 118.833-56 chr3 147980949 147981099 + 0.833333 NA Intergenic Intergenic -97135 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 169.5-55 chr5 9117197 9117428 + 0.833333 NA intron (NM_003966, intron 15 of 22) intron (NM_003966, intron 15 of 22) -63417 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 207.5-28 chr3 132757778 132758175 + 0.833333 NA intron (NR_002811, intron 3 of 10) intron (NR_002811, intron 3 of 10) -35517 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 145.833-41 chr2 186933662 186933878 + 0.833333 NA Intergenic Intergenic -84600 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 204.833-2 chr1 54048825 54049121 + 0.833333 NA intron (NM_001305051, intron 1 of 7) intron (NM_001305051, intron 1 of 7) 4231 NM_001305043 9528 Hs.118947 NM_004872 ENSG00000116209 TMEM59 C1orf8|DCF1|HSPC001|PRO195|UNQ169 transmembrane protein 59 protein-coding 161.833-30 chr4 30749264 30749636 + 0.833333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 29081 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 292.333-13 chr8 126451833 126452391 + 0.833333 NA Intergenic MIR3|SINE|MIR 106366 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 253.5-14 chr2 4856043 4856369 + 0.833333 NA Intergenic L1MB8|LINE|L1 -199984 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 221-21 chr3 79635426 79635981 + 0.833333 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 127816 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 193.833-36 chr7 48335070 48335606 + 0.833333 NA intron (NM_152701, intron 27 of 61) intron (NM_152701, intron 27 of 61) 163880 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 134.667-55 chr21 14950134 14950425 + 0.833333 NA Intergenic Intergenic -31611 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 154-35 chr2 33082038 33082331 + 0.833333 NA intron (NM_206943, intron 3 of 33) MSTD|LTR|ERVL-MaLR -52413 NM_001166264 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 157.833-15 chr12 17980081 17980435 + 0.833333 NA Intergenic Intergenic 109935 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 227-17 chr22 48549157 48549498 + 0.833333 NA intron (NM_001082967, intron 1 of 3) intron (NM_001082967, intron 1 of 3) -1940 NR_038917 284933 Hs.159057 NR_038917 ENSG00000281732 LOC284933 - uncharacterized LOC284933 ncRNA 236.334-11 chr5 121752416 121753007 + 0.833333 NA Intergenic Intergenic -99171 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 144.667-53 chr2 109466484 109466798 + 0.833333 NA intron (NM_001099289, intron 8 of 9) L1MC1|LINE|L1 147026 NM_001321513 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 205-14 chr18 12008860 12009145 + 0.833333 NA intron (NM_014214, intron 2 of 7) intron (NM_014214, intron 2 of 7) 27495 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol monophosphatase 2 protein-coding 123.167-59 chr3 3566920 3567178 + 0.833333 NA Intergenic MamGypLTR1a|LTR|Gypsy -232382 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 162.167-52 chr8 104576879 104577138 + 0.833333 NA intron (NM_013437, intron 1 of 6) L1PA13|LINE|L1 12016 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 195.333-24 chr2 132690919 132691242 + 0.833333 NA intron (NM_207481, intron 17 of 17) LTR33A|LTR|ERVL -19554 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 202.167-4 chr10 34345930 34346445 + 0.833333 NA intron (NM_001184789, intron 14 of 22) intron (NM_001184789, intron 14 of 22) 469109 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 167.167-14 chr10 111345434 111345720 + 0.833333 NA Intergenic L1MB7|LINE|L1 231286 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 144-69 chr7 34474215 34474497 + 0.833333 NA intron (NR_033665, intron 2 of 3) L1M6|LINE|L1 -183862 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 225.167-31 chr8 106617687 106618026 + 0.833333 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) -39952 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 191.167-33 chr8 63733596 63733945 + 0.833333 NA Intergenic Intergenic -35660 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 190-14 chr14 74113009 74113424 + 0.833333 NA intron (NM_001024674, intron 5 of 5) AluSx1|SINE|Alu 28263 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 232.333-14 chr2 54155166 54155708 + 0.833333 NA intron (NM_138448, intron 3 of 3) MER1B|DNA|hAT-Charlie 32154 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 177-27 chr18 12945799 12946033 + 0.833333 NA Intergenic L1MC1|LINE|L1 -2068 NM_031216 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 265.167-3 chr10 92955401 92955961 + 0.833333 NA exon (NM_019053, exon 17 of 22) exon (NM_019053, exon 17 of 22) -105117 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 224.333-24 chr4 34504036 34504631 + 0.833333 NA Intergenic AluSz|SINE|Alu -234586 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 149.167-62 chr8 30177390 30177712 + 0.833333 NA intron (NM_006571, intron 4 of 6) AluSz|SINE|Alu 21182 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 167.333-43 chr3 8861275 8861598 + 0.833333 NA Intergenic L1MEc|LINE|L1 -91822 NM_001354653 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 157-83 chr8 134369934 134370236 + 0.833333 NA Intergenic Intergenic -227986 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 195.667-45 chr8 115568972 115569346 + 0.833333 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 98854 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 164-31 chr2 44001514 44001858 + 0.833333 NA Intergenic Intergenic -5697 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 168-43 chr3 172298317 172298674 + 0.833333 NA intron (NM_001135095, intron 8 of 25) intron (NM_001135095, intron 8 of 25) 149961 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 120.667-81 chr3 141634178 141634446 + 0.833333 NA Intergenic L1ME4b|LINE|L1 -28887 NR_136190 646730 Hs.570677 NR_136190 LINC02618 - long intergenic non-protein coding RNA 2618 ncRNA 140.167-24 chr15 83158008 83158380 + 0.833333 NA intron (NM_016073, intron 2 of 5) intron (NM_016073, intron 2 of 5) 49629 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 147.833-19 chr14 56581967 56582421 + 0.833333 NA intron (NM_017799, intron 1 of 15) intron (NM_017799, intron 1 of 15) 2396 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 318.334-2 chr3 105652196 105652921 + 0.833333 NA Intergenic Intergenic 215033 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 128.167-72 chr5 160899303 160899497 + 0.833333 NA Intergenic L1MA10|LINE|L1 39226 NR_151858 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 189.5-17 chr14 67797105 67797449 + 0.833333 NA intron (NM_015346, intron 12 of 41) L1ME4b|LINE|L1 19313 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 279.333-8 chr3 87137034 87137400 + 0.833333 NA intron (NR_104153, intron 1 of 2) L1ME1|LINE|L1 47937 NR_047469 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 237.333-29 chr4 53850468 53850861 + 0.833333 NA Intergenic Intergenic 136618 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 210.333-8 chr12 39497721 39498021 + 0.833333 NA Intergenic AluJb|SINE|Alu -54751 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 159-50 chr3 17265265 17265576 + 0.833333 NA intron (NM_014744, intron 15 of 21) intron (NM_014744, intron 15 of 21) 332224 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 168.167-14 chr14 29685247 29685515 + 0.833333 NA intron (NM_001330069, intron 2 of 18) intron (NM_001330069, intron 2 of 18) 241715 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 212.167-16 chr3 178079337 178079750 + 0.833333 NA Intergenic Intergenic 262678 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 261.167-8 chr2 14514986 14515572 + 0.833333 NA Intergenic MER101|LTR|ERV1 -114321 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 212.167-15 chr3 173150901 173151358 + 0.833333 NA Intergenic L1MA1|LINE|L1 -9894 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 191-22 chr18 62093942 62094313 + 0.833333 NA intron (NM_176787, intron 23 of 30) intron (NM_176787, intron 23 of 30) 92929 NM_176787 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 154.333-59 chr5 46203692 46204124 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -507528 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 126.167-43 chr2 104022398 104022711 + 0.833333 NA Intergenic L2a|LINE|L2 385778 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 174.833-33 chr4 24005438 24005852 + 0.833333 NA intron (NM_001330752, intron 2 of 13) intron (NM_001330752, intron 2 of 13) -115598 NM_013261 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 198.667-41 chr4 110568386 110568667 + 0.833333 NA Intergenic L1MB7|LINE|L1 46932 NR_147204 110231149 Hs.436030 NR_147203 ENSG00000250103 PANCR - PITX2 adjacent non-coding RNA ncRNA 156-2 chr1 46807592 46808081 + 0.833333 NA intron (NM_001319163, intron 1 of 9) intron (NM_001319163, intron 1 of 9) 8790 NM_001319162 1580 Hs.436317 NM_000779 ENSG00000142973 CYP4B1 CYPIVB1|P-450HP cytochrome P450 family 4 subfamily B member 1 protein-coding 140.667-3 chr1 95598350 95598576 + 0.833333 NA Intergenic L1ME3|LINE|L1 88347 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 115.667-26 chr12 45030427 45030671 + 0.833333 NA intron (NM_001004329, intron 2 of 3) intron (NM_001004329, intron 2 of 3) 20550 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 119.5-2 chr1 11893134 11893349 + 0.833333 NA Intergenic FLAM_A|SINE|Alu -14913 NR_002754 26829 NR_002754 ENSG00000199347 RNU5E-1 RNU5E|U5E RNA, U5E small nuclear 1 snRNA 138.167-82 chrX 85117941 85118183 + 0.833333 NA intron (NM_001367858, intron 4 of 11) intron (NM_001367858, intron 4 of 11) -9094 NM_001012980 340562 Hs.640783 NM_001012980 ENSG00000184788 SATL1 - spermidine/spermine N1-acetyl transferase like 1 protein-coding 213.667-11 chr14 72507556 72508154 + 0.833333 NA intron (NM_001370280, intron 13 of 17) intron (NM_001370280, intron 13 of 17) -8965 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 122.5-54 chr20 47542915 47543137 + 0.833333 NA intron (NM_181659, intron 1 of 22) MLT1F1|LTR|ERVL-MaLR 41139 NM_181659 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 215.333-30 chr3 95000564 95000985 + 0.833333 NA Intergenic Intergenic 62511 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 119.167-19 chr13 95680827 95681062 + 0.833333 NA intron (NM_006260, intron 1 of 11) intron (NM_006260, intron 1 of 11) 3805 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 137-14 chr10 97959931 97960268 + 0.833333 NA intron (NM_001206528, intron 2 of 14) MER68|LTR|ERVL 70522 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 133.667-3 chr1 57057099 57057431 + 0.833333 NA intron (NM_001353986, intron 9 of 14) intron (NM_001353986, intron 9 of 14) -91125 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 234.833-2 chr10 28618063 28618554 + 0.833333 NA intron (NM_100486, intron 12 of 12) intron (NM_100486, intron 12 of 12) -59213 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 269.667-5 chr11 8455215 8455915 + 0.833333 NA intron (NM_001352388, intron 8 of 14) AluYj4|SINE|Alu 138411 NM_001352397 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 140.833-63 chr8 131957709 131957929 + 0.833333 NA intron (NR_136616, intron 7 of 23) intron (NR_136616, intron 7 of 23) 41046 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 215.333-39 chr5 66990876 66991193 + 0.833333 NA intron (NM_001290226, intron 1 of 26) intron (NM_001290226, intron 1 of 26) 13120 NR_111908 101928794 Hs.672435 NR_111908 MAST4-AS1 - MAST4 antisense RNA 1 ncRNA 128.667-102 chr6 81304043 81304301 + 0.833333 NA Intergenic Intergenic 448509 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 135.833-26 chr17 71508124 71508424 + 0.833333 NA Intergenic Intergenic -306095 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 176.5-33 chr2 121845725 121845998 + 0.833333 NA Intergenic Intergenic 90210 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 184-15 chr14 43429501 43429957 + 0.833333 NA Intergenic Intergenic 1077554 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 126.5-61 chr3 145886078 145886353 + 0.833333 NA Intergenic Intergenic 182970 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 132.333-27 chr12 26367784 26368095 + 0.833333 NA intron (NM_002223, intron 55 of 56) intron (NM_002223, intron 55 of 56) 172366 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 129.5-61 chr3 133157227 133157407 + 0.833333 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 32496 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 194.5-12 chr18 7196759 7197086 + 0.833333 NA Intergenic L1ME1|LINE|L1 -34182 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 194.833-31 chr9 18405994 18406280 + 0.833333 NA Intergenic Intergenic -68016 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 179.333-44 chr4 110395127 110395584 + 0.833333 NA Intergenic Intergenic -80800 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 113.5-68 chr4 85899239 85899511 + 0.833333 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) -30641 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 162.667-14 chr12 68836174 68836810 + 0.833333 NA intron (NM_001145340, intron 4 of 4) HAL1|LINE|L1 27468 NM_001145337 4193 Hs.484551 NM_002392 ENSG00000135679 MDM2 ACTFS|HDMX|hdm2 MDM2 proto-oncogene protein-coding 136-21 chr12 86542738 86543169 + 0.833333 NA intron (NM_001351285, intron 2 of 8) intron (NM_001351285, intron 2 of 8) 202196 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 221.5-17 chr2 56975163 56975464 + 0.833333 NA Intergenic L1MA8|LINE|L1 -789543 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 259.833-5 chr2 8656279 8657040 + 0.833333 NA Intergenic AluJo|SINE|Alu 25202 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 ncRNA 116.833-4 chr10 22367265 22367547 + 0.833333 NA intron (NM_172242, intron 3 of 9) intron (NM_172242, intron 3 of 9) 21910 NM_012443 9576 Hs.655170 NM_012443 ENSG00000077327 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 204.667-15 chr12 50428442 50428733 + 0.833333 NA intron (NM_001352304, intron 3 of 11) MIR|SINE|MIR 27180 NM_001352314 113251 Hs.26613 NM_052879 ENSG00000161813 LARP4 PP13296 La ribonucleoprotein domain family member 4 protein-coding 145.667-63 chr3 103110782 103111257 + 0.833333 NA Intergenic (GT)n|Simple_repeat|Simple_repeat 413097 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 186.833-9 chr12 128199892 128200308 + 0.833333 NA Intergenic L1M5|LINE|L1 -67303 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 191.5-15 chr12 123763546 123763895 + 0.833333 NA intron (NM_207437, intron 1 of 77) AluJb|SINE|Alu 1225 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 209.167-29 chr5 14622691 14622972 + 0.833333 NA Intergenic AluSx|SINE|Alu 29551 NR_132981 106635684 NR_132981 SNORD141B - small nucleolar RNA, C/D box 141B snoRNA 130.5-3 chr1 100713565 100713756 + 0.833333 NA Intergenic MER30|DNA|hAT-Charlie -5980 NM_080682 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 133.833-69 chr6 149322792 149323086 + 0.833333 NA intron (NM_015093, intron 1 of 8) intron (NM_015093, intron 1 of 8) 4639 NM_015093 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 307.5-9 chr3 42220281 42220939 + 0.833333 NA intron (NM_001349247, intron 16 of 16) intron (NM_001349247, intron 16 of 16) 43337 NM_001174138 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 203.167-20 chr16 74976178 74976742 + 0.833333 NA intron (NM_001324172, intron 1 of 13) AluSc8|SINE|Alu 8663 NM_030581 79726 Hs.280951 NM_030581 ENSG00000103091 WDR59 CDW12|FP977|p90-120 WD repeat domain 59 protein-coding 121-34 chr17 3294483 3294710 + 0.833333 NA Intergenic L1M7|LINE|L1 -2014 NM_002550 4994 Hs.647410 NM_002550 ENSG00000180090 OR3A1 OLFRA03|OR17-40|OR17-82|OR40 olfactory receptor family 3 subfamily A member 1 protein-coding 237.5-9 chr14 53037128 53037630 + 0.833333 NA 3' UTR (NM_001160147, exon 13 of 13) 3' UTR (NM_001160147, exon 13 of 13) -86282 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 159.167-16 chr13 105325152 105325389 + 0.833333 NA Intergenic Charlie15b|DNA|hAT-Charlie -140597 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 176.167-40 chr6 120331697 120332016 + 0.833333 NA Intergenic L1MEc|LINE|L1 316677 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 229.333-24 chr3 104832944 104833485 + 0.833333 NA Intergenic MER77B|LTR|ERVL -533499 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 197.5-24 chr2 30248176 30248613 + 0.833333 NA intron (NM_030915, intron 2 of 2) intron (NM_030915, intron 2 of 2) 16860 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - LBH regulator of WNT signaling pathway protein-coding 211-34 chr7 12333806 12334358 + 0.833333 NA intron (NM_001135924, intron 27 of 28) intron (NM_001135924, intron 27 of 28) 69783 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 136-41 chr2 226923273 226923479 + 0.833333 NA intron (NM_001349069, intron 8 of 8) L1MA3|LINE|L1 87322 NM_001167608 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 194.5-34 chr5 27401321 27401696 + 0.833333 NA Intergenic Intergenic -70784 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 286.833-2 chr12 44689759 44690222 + 0.833333 NA intron (NM_006159, intron 13 of 20) intron (NM_006159, intron 13 of 20) 185671 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 183.5-57 chr8 117689469 117689801 + 0.833333 NA Intergenic LTR104_Mam|LTR|Gypsy 168922 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 167-8 chr10 64649057 64649407 + 0.833333 NA Intergenic Intergenic -176296 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 116.667-50 chr18 62745614 62745828 + 0.833333 NA intron (NM_194449, intron 1 of 16) intron (NM_194449, intron 1 of 16) 30180 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 248-6 chr2 100809990 100810445 + 0.833333 NA Intergenic Intergenic -9922 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 120.667-41 chr15 27291051 27291216 + 0.833333 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -129814 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 153.333-7 chr10 50228259 50228526 + 0.833333 NA intron (NM_001143974, intron 6 of 18) intron (NM_001143974, intron 6 of 18) 20218 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 126.667-30 chr18 22285657 22285830 + 0.833333 NA Intergenic L2|LINE|L2 116306 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 140.5-29 chr17 60860987 60861329 + 0.833333 NA intron (NM_001330413, intron 7 of 25) L1PA15|LINE|L1 183307 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 187.667-36 chr4 47041064 47041395 + 0.833333 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 9662 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 125.833-95 chr8 124348612 124348859 + 0.833333 NA intron (NM_194291, intron 1 of 6) intron (NM_194291, intron 1 of 6) 23964 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 141.5-31 chr14 46740896 46741205 + 0.833333 NA Intergenic Intergenic -89269 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 142.5-45 chr22 28548062 28548250 + 0.833333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 88287 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 201.667-22 chr2 191139605 191139909 + 0.833333 NA intron (NM_003151, intron 3 of 23) L1PB2|LINE|L1 11237 NM_003151 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 216.167-14 chr2 212319531 212319859 + 0.833333 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 106665 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 252.833-3 chr11 29481158 29481641 + 0.833333 NA Intergenic Intergenic -113014 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 150.333-59 chr2 194093243 194093452 + 0.833333 NA Intergenic MER57A-int|LTR|ERV1 -250922 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 146.833-2 chr1 219490539 219490817 + 0.833333 NA intron (NR_135822, intron 1 of 3) MIR|SINE|MIR 66646 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 169.333-64 chr6 144651141 144651637 + 0.833333 NA intron (NM_007124, intron 50 of 73) intron (NM_007124, intron 50 of 73) 245734 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 143.167-10 chr10 49459812 49460187 + 0.833333 NA intron (NM_001346440, intron 20 of 20) intron (NM_001346440, intron 20 of 20) -63910 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 157.333-11 chr11 78973369 78973764 + 0.833333 NA intron (NM_001098816, intron 6 of 33) L2a|LINE|L2 -398702 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 156.833-7 chr10 41766837 41767223 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 601015 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 127.833-29 chr17 16588901 16589411 + 0.833333 NA Intergenic CpG -19944 NM_001346169 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 146.833-54 chr6 74643439 74643673 + 0.833333 NA intron (NR_110856, intron 2 of 3) L2b|LINE|L2 485226 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 124.333-106 chr9 28053336 28053538 + 0.833333 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -479571 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 192.333-35 chr3 168029762 168030474 + 0.833333 NA intron (NM_001308155, intron 8 of 14) intron (NM_001308155, intron 8 of 14) 65806 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 131.667-69 chr21 16441540 16441841 + 0.833333 NA intron (NR_136550, intron 1 of 3) L2c|LINE|L2 21395 NR_136550 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 192.167-22 chr2 39769927 39770317 + 0.833333 NA intron (NR_135664, intron 2 of 11) intron (NR_135664, intron 2 of 11) 9136 NM_025264 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 120.167-39 chr2 151623384 151623691 + 0.833333 NA intron (NM_001271208, intron 71 of 182) intron (NM_001271208, intron 71 of 182) 110939 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 293.333-10 chr22 34735167 34735648 + 0.833333 NA Intergenic Intergenic 262509 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 140-11 chr10 95128635 95128918 + 0.833333 NA Intergenic HUERS-P3-int|LTR|ERV1 -59279 NM_001198855 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 155-33 chr2 85642313 85642608 + 0.833333 NA intron (NM_001256726, intron 10 of 11) intron (NM_001256726, intron 10 of 11) 25739 NM_000542 6439 Hs.512690 NM_000542 ENSG00000168878 SFTPB PSP-B|SFTB3|SFTP3|SMDP1|SP-B surfactant protein B protein-coding 127.667-38 chr2 54187686 54188006 + 0.833333 NA intron (NM_138448, intron 3 of 3) MLT1A1|LTR|ERVL-MaLR 64563 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 144.833-37 chr20 6365626 6365899 + 0.833333 NA Intergenic L1MA3|LINE|L1 -60970 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 177-19 chr15 86501914 86502201 + 0.833333 NA intron (NM_152336, intron 18 of 24) L1MB7|LINE|L1 -185089 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 181-43 chr3 90634201 90634560 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 1526759 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 170.667-52 chr5 27178193 27178618 + 0.833333 NA Intergenic Intergenic -139819 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 188.833-23 chr3 107339627 107340153 + 0.833333 NA Intergenic A-rich|Low_complexity|Low_complexity -37549 NM_032600 84692 Hs.164799 NM_032600 ENSG00000138483 CCDC54 NYD-SP17|SP17 coiled-coil domain containing 54 protein-coding 206.333-31 chr7 9093123 9093412 + 0.833333 NA Intergenic L1PREC2|LINE|L1 -541003 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 131-40 chr3 96252364 96252545 + 0.833333 NA Intergenic Intergenic -107510 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 173.167-45 chr7 127877001 127877293 + 0.833333 NA intron (NM_014390, intron 12 of 23) intron (NM_014390, intron 12 of 23) -120362 NR_027330 27099 Hs.657377 NM_014411 ENSG00000279078 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 ncRNA 115.167-73 chr4 64008010 64008279 + 0.833333 NA Intergenic LTR26|LTR|ERV1 401306 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 254.667-29 chr7 90588869 90589229 + 0.833333 NA Intergenic Intergenic -7272 NM_001287135 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 142.833-20 chr15 75343615 75343920 + 0.833333 NA TTS (NR_104312) TTS (NR_104312) -3223 NM_001352519 79661 Hs.512732 NM_024608 ENSG00000140398 NEIL1 FPG1|NEI1|hFPG1 nei like DNA glycosylase 1 protein-coding 149.667-68 chr6 77493262 77493645 + 0.833333 NA Intergenic Intergenic -29431 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 218.167-15 chr20 7718300 7718561 + 0.833333 NA Intergenic Intergenic 222028 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 167.167-61 chr8 133006495 133006729 + 0.833333 NA intron (NM_003235, intron 35 of 47) intron (NM_003235, intron 35 of 47) 39969 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 118.5-80 chr5 19423812 19424147 + 0.833333 NA Intergenic Intergenic 462293 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 327.833-5 chr6 141595139 141595832 + 0.833333 NA Intergenic L1ME1|LINE|L1 493314 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 126.667-66 chr4 69703345 69703562 + 0.833333 NA Intergenic Intergenic -50206 NM_006798 10941 Hs.225950 NM_006798 ENSG00000173610 UGT2A1 UDPGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus protein-coding 128.833-48 chr2 205526878 205527134 + 0.833333 NA intron (NM_205863, intron 20 of 21) intron (NM_205863, intron 20 of 21) -155494 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 135.167-43 chr18 67904536 67904747 + 0.833333 NA Intergenic AluJb|SINE|Alu -89819 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 124-91 chr8 5957767 5958083 + 0.833333 NA Intergenic HAL1ME|LINE|L1 448623 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 271.333-13 chr22 19828754 19829297 + 0.833333 NA intron (NM_053004, intron 2 of 7) AluSx|SINE|Alu 25849 NM_024627 79680 Hs.105642 NM_024627 ENSG00000215012 RTL10 BOP|C22orf29 retrotransposon Gag like 10 protein-coding 151.167-11 chr11 114412557 114412795 + 0.833333 NA Intergenic AluJr|SINE|Alu 12010 NM_001286048 10179 Hs.7527 NM_016090 ENSG00000076053 RBM7 - RNA binding motif protein 7 protein-coding 113.667-14 chr10 23269166 23269361 + 0.833333 NA intron (NM_001365862, intron 8 of 15) L1MEf|LINE|L1 -74694 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 130.833-52 chr4 87830002 87830201 + 0.833333 NA intron (NM_001184694, intron 1 of 3) intron (NM_001184694, intron 1 of 3) -2868 NM_001184696 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 180.333-41 chr3 18235358 18235728 + 0.833333 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 189796 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 125.5-60 chr4 105819268 105819772 + 0.833333 NA intron (NR_125927, intron 3 of 3) L2c|LINE|L2 7652 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 229-38 chr6 70073981 70074626 + 0.833333 NA intron (NM_001858, intron 15 of 50) AluSx1|SINE|Alu 207747 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 180.5-23 chr18 2584312 2584620 + 0.833333 NA intron (NM_006101, intron 6 of 16) intron (NM_006101, intron 6 of 16) 12909 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 132.5-65 chr4 48637326 48637520 + 0.833333 NA intron (NM_015030, intron 3 of 63) intron (NM_015030, intron 3 of 63) 142876 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 244.5-4 chr10 93822034 93822485 + 0.833333 NA Intergenic L1MC4|LINE|L1 64323 NM_005097 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 156.667-73 chr5 140657246 140657523 + 0.833333 NA intron (NM_006083, intron 9 of 19) L2b|LINE|L2 -7415 NM_017706 54853 Hs.286261 NM_017706 ENSG00000120314 WDR55 - WD repeat domain 55 protein-coding 179.5-24 chr4 71213926 71214247 + 0.833333 NA intron (NM_001098484, intron 1 of 25) intron (NM_001098484, intron 1 of 25) 26800 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 133.667-25 chr14 59745086 59745259 + 0.833333 NA intron (NM_021136, intron 2 of 8) MSTC|LTR|ERVL-MaLR -98152 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 159.833-59 chr9 96813915 96814425 + 0.833333 NA Intergenic L1ME1|LINE|L1 -36041 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 291-11 chr4 43251757 43252208 + 0.833333 NA Intergenic Intergenic 240561 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 194.833-16 chr3 18302343 18302651 + 0.833333 NA Intergenic Intergenic 122842 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 212.333 chr1 75121202 75121495 + 0.833333 NA Intergenic Intergenic -7086 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 212.333-5 chr11 20265396 20265712 + 0.833333 NA Intergenic L1MD|LINE|L1 -98131 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 363.167-3 chr5 151618472 151619737 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR -50160 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 213.833-36 chr8 77614003 77614469 + 0.833333 NA Intergenic Intergenic 163539 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 208.333-13 chr12 40497224 40497598 + 0.833333 NA intron (NM_173600, intron 59 of 173) intron (NM_173600, intron 59 of 173) 104017 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 168.667-21 chr14 104044269 104044621 + 0.833333 NA intron (NM_153046, intron 34 of 35) L1ME1|LINE|L1 -41255 NM_001080464 374569 Hs.146239 NM_001080464 ENSG00000166183 ASPG C14orf76|GPA/WT|LYSOLP asparaginase protein-coding 195.167-39 chr8 86705703 86706078 + 0.833333 NA intron (NM_019098, intron 3 of 17) intron (NM_019098, intron 3 of 17) 37785 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 131.167-72 chr7 67704467 67704750 + 0.833333 NA Intergenic Intergenic -315645 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 128.167-29 chr15 24819106 24819416 + 0.833333 NA Intergenic Intergenic -4347 NM_022808 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 113.833-77 chr6 53880017 53880177 + 0.833333 NA intron (NM_018214, intron 3 of 13) intron (NM_018214, intron 3 of 13) -49885 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 279.333-14 chr6 80892082 80892498 + 0.833333 NA Intergenic Intergenic 785619 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 155.833-34 chr20 7574423 7574713 + 0.833333 NA Intergenic L1MA4A|LINE|L1 202960 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 208.667-19 chr14 99303150 99303500 + 0.833333 NA Intergenic L1PA16|LINE|L1 -31128 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 119.667-25 chr15 95220009 95220273 + 0.833333 NA Intergenic L1MA8|LINE|L1 106959 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 340.667-2 chr1 207431166 207431820 + 0.833333 NA Intergenic Intergenic -22807 NM_001006658 1380 Hs.445757 NM_001877 ENSG00000117322 CR2 C3DR|CD21|CR|CVID7|SLEB9 complement C3d receptor 2 protein-coding 192.333-29 chr22 26513301 26513788 + 0.833333 NA non-coding (NR_144529, exon 2 of 2) non-coding (NR_144529, exon 2 of 2) 1012 NR_144529 100507599 Hs.405877 NR_144529 LOC100507599 - uncharacterized LOC100507599 ncRNA 144.667-17 chr10 95816446 95816717 + 0.833333 NA intron (NM_001312654, intron 2 of 9) MLT1C|LTR|ERVL-MaLR 60418 NM_001164182 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 133.167-12 chr10 92074901 92075351 + 0.833333 NA intron (NM_001178137, intron 9 of 9) intron (NM_001178137, intron 9 of 9) 151356 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 142-89 chr8 30715648 30715908 + 0.833333 NA intron (NM_000637, intron 1 of 12) intron (NM_000637, intron 1 of 12) 12068 NM_000637 2936 Hs.271510 NM_000637 ENSG00000104687 GSR GR|HEL-75|HEL-S-122m glutathione-disulfide reductase protein-coding 225-5 chr10 33107325 33107750 + 0.833333 NA intron (NR_160030, intron 1 of 2) intron (NR_160030, intron 1 of 2) 9270 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 147.333-14 chr11 85841538 85841784 + 0.833333 NA Intergenic L1PA13|LINE|L1 -13440 NM_173556 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 157.667-32 chr2 24738148 24738373 + 0.833333 NA intron (NM_001362950, intron 17 of 23) (TA)n|Simple_repeat|Simple_repeat -54855 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 198.833-10 chr18 45122971 45123246 + 0.833333 NA Intergenic L2a|LINE|L2 -44855 NM_001371319 162.834-5 chr6 86372502 86373019 + 0.833333 NA Intergenic L1MB3|LINE|L1 -564768 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 123-3 chr1 209524095 209524456 + 0.833333 NA Intergenic L1MA4|LINE|L1 -59439 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 172.833-47 chr5 169103127 169103429 + 0.833333 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 90051 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 139.5-68 chr7 89488645 89488850 + 0.833333 NA Intergenic Intergenic -630653 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 131.833-40 chr2 207428932 207429124 + 0.833333 NA Intergenic Intergenic -100934 NR_163947 128.333-26 chr12 98873524 98873770 + 0.833333 NA intron (NM_152788, intron 17 of 25) intron (NM_152788, intron 17 of 25) 21127 NM_001352222 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 116.333-60 chr3 62621827 62622094 + 0.833333 NA intron (NM_003716, intron 6 of 29) intron (NM_003716, intron 6 of 29) -248410 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 144.667-83 chr6 85383780 85384108 + 0.833333 NA Intergenic Intergenic 6242 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 124-58 chr2 232797514 232797881 + 0.833333 NA intron (NM_015575, intron 16 of 30) L1MD1|LINE|L1 -21132 NM_001172416 3769 Hs.467338 NM_002242 ENSG00000115474 KCNJ13 KIR1.4|KIR7.1|LCA16|SVD potassium voltage-gated channel subfamily J member 13 protein-coding 184.167-2 chr1 31519875 31520139 + 0.833333 NA intron (NR_027085, intron 1 of 2) MLT1J2|LTR|ERVL-MaLR 1572 NR_027085 284551 Hs.658659 NR_027085 LINC01226 - long intergenic non-protein coding RNA 1226 ncRNA 116.333-17 chr10 68771271 68771467 + 0.833333 NA exon (NM_001282960, exon 17 of 24) exon (NM_001282960, exon 17 of 24) 16197 NR_003076 692211 NR_003076 ENSG00000283551 SNORD98 HBII-419 small nucleolar RNA, C/D box 98 snoRNA 113.5-79 chr6 150560595 150560744 + 0.833333 NA Intergenic MER54A|LTR|ERVL -39216 NM_001329805 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 119.167-102 chrX 144044463 144044690 + 0.833333 NA Intergenic Tigger20a|DNA|TcMar-Tigger 160505 NM_001012989 389898 Hs.585177 NM_001012989 ENSG00000276380 UBE2NL Li174 ubiquitin conjugating enzyme E2 N like (gene/pseudogene) protein-coding 174.167-12 chr14 20342517 20342771 + 0.833333 NA promoter-TSS (NM_005484) promoter-TSS (NM_005484) 767 NR_002312 85495 Hs.613102 NR_002312 ENSG00000277209 RPPH1 H1RNA|RPPH1-1 ribonuclease P RNA component H1 ncRNA 127.333-21 chr11 104071560 104071712 + 0.833333 NA intron (NM_025208, intron 1 of 6) L1M2|LINE|L1 34996 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 151.667-85 chr8 67962150 67962528 + 0.833333 NA intron (NM_024870, intron 1 of 39) intron (NM_024870, intron 1 of 39) 10293 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 288.667-4 chr14 68254702 68255332 + 0.833333 NA intron (NM_133509, intron 7 of 10) (TTTTCC)n|Simple_repeat|Simple_repeat 373770 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 253.833-9 chr3 172690304 172690839 + 0.833333 NA intron (NM_001146276, intron 1 of 4) L1ME4c|LINE|L1 20496 NM_020792 57552 Hs.444099 NM_020792 ENSG00000144959 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 130.167-21 chr15 80499608 80499847 + 0.833333 NA intron (NM_014862, intron 5 of 18) MLT1K|LTR|ERVL-MaLR 63217 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 258.333-7 chr10 131393003 131393427 + 0.833333 NA Intergenic Intergenic -81494 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 230-34 chrX 72348013 72348562 + 0.833333 NA intron (NR_051952, intron 9 of 9) intron (NR_051952, intron 9 of 9) -41130 NM_001144886 4435 Hs.40403 NM_004143 ENSG00000125931 CITED1 MSG1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 protein-coding 282.667-4 chr11 48007999 48008508 + 0.833333 NA intron (NM_001098503, intron 1 of 8) intron (NM_001098503, intron 1 of 8) 27694 NM_002843 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 449.166 chr20 41254484 41255497 + 0.833333 NA intron (NM_015035, intron 2 of 3) L2c|LINE|L2 45130 NM_015035 23051 Hs.380133 NM_015035 ENSG00000174306 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 213.667-26 chr3 151824159 151824605 + 0.833333 NA intron (NM_001086, intron 3 of 4) L1ME3A|LINE|L1 10266 NM_001086 13 Hs.506908 NM_001086 ENSG00000114771 AADAC CES5A1|DAC arylacetamide deacetylase protein-coding 245.833-4 chr15 68960134 68960626 + 0.833333 NA intron (NM_001184780, intron 1 of 15) MIRb|SINE|MIR 29855 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 157.333-79 chr9 118915220 118915454 + 0.833333 NA Intergenic L1MA2|LINE|L1 235666 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 172-53 chr5 102033973 102034238 + 0.833333 NA Intergenic Charlie1a|DNA|hAT-Charlie 262179 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 175.667-28 chr2 40861714 40861935 + 0.833333 NA Intergenic Tigger13a|DNA|TcMar-Tigger -349389 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 145.833-57 chr4 58365713 58366100 + 0.833333 NA Intergenic Intergenic 170422 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 210.667-51 chr7 82175999 82176334 + 0.833333 NA intron (NM_000722, intron 3 of 38) MamRTE1|LINE|RTE-BovB 166989 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 188.167-20 chr2 102753471 102753714 + 0.833333 NA intron (NM_001321346, intron 1 of 3) AluJo|SINE|Alu -8439 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 210-4 chr12 118115884 118116170 + 0.833333 NA Intergenic MER50|LTR|ERV1 -12016 NM_019086 54621 Hs.187624 NM_019086 ENSG00000176834 VSIG10 - V-set and immunoglobulin domain containing 10 protein-coding 257.833-8 chr3 65171644 65172056 + 0.833333 NA Intergenic MIRc|SINE|MIR -483850 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 179.667-14 chr14 65669806 65670306 + 0.833333 NA intron (NR_038167, intron 7 of 8) intron (NR_038167, intron 7 of 8) 198954 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 226.333-34 chr5 40575380 40575747 + 0.833333 NA Intergenic Intergenic -104352 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 166-48 chr4 167658075 167658470 + 0.833333 NA Intergenic L1M4c|LINE|L1 -423682 NM_001251967 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 122.833-18 chr12 115305052 115305256 + 0.833333 NA Intergenic Intergenic -620979 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 200.5-36 chr5 23765853 23766267 + 0.833333 NA Intergenic Intergenic -185288 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 180.5-44 chr5 43281930 43282273 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL 31080 NM_001364188 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 179.333-10 chr11 72444395 72444720 + 0.833333 NA Intergenic L1ME1|LINE|L1 -9873 NM_001258394 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 151.333-51 chr2 192408407 192408712 + 0.833333 NA Intergenic Intergenic -213626 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 143.167-18 chr14 46675620 46675872 + 0.833333 NA Intergenic L1MA7|LINE|L1 -23965 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 222.5-3 chr10 115096751 115097243 + 0.833333 NA intron (NR_074088, intron 2 of 9) intron (NR_074088, intron 2 of 9) 3632 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 133.333-27 chr12 2126399 2126698 + 0.833333 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 73263 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 179.833-2 chr1 81494496 81494794 + 0.833333 NA intron (NM_001366008, intron 2 of 26) intron (NM_001366008, intron 2 of 26) 63057 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 206.167-6 chr19 5083000 5083314 + 0.833333 NA intron (NM_001370094, intron 9 of 10) intron (NM_001370094, intron 9 of 10) 114044 NM_001370094 23030 Hs.654816 NM_015015 ENSG00000127663 KDM4B JMJD2B|TDRD14B lysine demethylase 4B protein-coding 202.667-38 chr6 106271821 106272119 + 0.833333 NA intron (NM_001286111, intron 2 of 4) L2a|LINE|L2 44296 NR_104402 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 198.167-21 chr21 25277849 25278201 + 0.833333 NA Intergenic LTR40b|LTR|ERVL 153676 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 157.833-27 chr15 83196214 83196468 + 0.833333 NA intron (NM_016073, intron 1 of 5) L1M5|LINE|L1 11482 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 169.333-15 chr12 8662583 8662942 + 0.833333 NA promoter-TSS (NM_001297710) promoter-TSS (NM_001297710) 64 NR_123734 8076 Hs.512842 NM_003480 ENSG00000197614 MFAP5 AAT9|MAGP-2|MAGP2|MFAP-5|MP25 microfibril associated protein 5 protein-coding 196.333-43 chr6 36665832 36666179 + 0.833333 NA Intergenic L1M5|LINE|L1 9121 NR_109836 101154753 Hs.741557 NR_109836 ENSG00000281450 PANDAR PANDA promoter of CDKN1A antisense DNA damage activated RNA ncRNA 120.833-50 chr3 165750402 165750618 + 0.833333 NA Intergenic Intergenic 86913 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 216.667-22 chr2 38384355 38384796 + 0.833333 NA Intergenic Intergenic -5991 NM_001330462 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 395.667 chr2 42494938 42495482 + 0.833333 NA 5' UTR (NM_001282755, exon 2 of 18) 5' UTR (NM_001282755, exon 2 of 18) 641 NM_001282755 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 128.167-27 chr14 73986986 73987220 + 0.833333 NA intron (NM_001249, intron 4 of 15) intron (NM_001249, intron 4 of 15) 32185 NM_001330189 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 189-26 chr3 36011471 36011741 + 0.833333 NA Intergenic Intergenic 267130 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 194.667-42 chr3 102835988 102836324 + 0.833333 NA Intergenic L2a|LINE|L2 401141 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 208.333-14 chr14 71698575 71699003 + 0.833333 NA intron (NM_001354286, intron 14 of 24) intron (NM_001354286, intron 14 of 24) 112491 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 243.5-3 chr12 38976399 38976739 + 0.833333 NA Intergenic MIR3|SINE|MIR -70978 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 221.833-23 chr6 99373810 99374258 + 0.833333 NA intron (NM_017421, intron 5 of 6) L1MD3|LINE|L1 20161 NM_017421 51805 Hs.713623 NM_017421 ENSG00000132423 COQ3 DHHBMT|DHHBMTASE|UG0215E05|bA9819.1 coenzyme Q3, methyltransferase protein-coding 247.667-23 chr7 67837879 67838229 + 0.833333 NA Intergenic Intergenic -182199 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 193-47 chr9 101980806 101981282 + 0.833333 NA Intergenic Intergenic -242464 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 173.333-8 chr1 174606632 174606931 + 0.833333 NA intron (NM_001366446, intron 13 of 25) X9_LINE|LINE|L1 -93758 NM_001366450 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 158.667-52 chr20 42431472 42431778 + 0.833333 NA intron (NM_133170, intron 9 of 31) L1ME4c|LINE|L1 -253858 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 133.833-12 chr10 68457352 68457559 + 0.833333 NA intron (NM_001080449, intron 5 of 20) L2a|LINE|L2 14518 NM_001080449 1763 Hs.532446 NM_001080449 ENSG00000138346 DNA2 DNA2L|hDNA2 DNA replication helicase/nuclease 2 protein-coding 155.667-17 chr10 84978432 84978726 + 0.833333 NA Intergenic Intergenic 220326 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 135.167-91 chr8 122154898 122155208 + 0.833333 NA Intergenic Intergenic 413591 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 186.5-31 chr16 63166931 63167323 + 0.833333 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -1130689 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 233-13 chr18 32656256 32656599 + 0.833333 NA Intergenic L1MA2|LINE|L1 116596 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 235.167-3 chr11 57653967 57654382 + 0.833333 NA Intergenic AluSq|SINE|Alu -3570 NM_001142597 10978 Hs.523687 NM_006831 ENSG00000172409 CLP1 HEAB|hClp1 cleavage and polyadenylation factor I subunit 1 protein-coding 163.5-65 chr6 132229807 132230151 + 0.833333 NA Intergenic Intergenic 96001 NR_038981 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 256.667-16 chr20 56080383 56080897 + 0.833333 NA Intergenic L1ME1|LINE|L1 -75121 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 164.333-76 chr7 16736848 16737073 + 0.833333 NA Intergenic MER72|LTR|ERV1 -16795 NM_014399 27075 Hs.364544 NM_014399 ENSG00000106537 TSPAN13 NET-6|NET6|TM4SF13 tetraspanin 13 protein-coding 230.333-4 chr16 8518547 8518875 + 0.833333 NA Intergenic L1MB3|LINE|L1 71127 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 133.5-48 chr4 162471948 162472220 + 0.833333 NA Intergenic AluY|SINE|Alu -308050 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 146.167-48 chr4 147319217 147319428 + 0.833333 NA Intergenic Intergenic 25395 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 124.667-13 chr10 61823041 61823204 + 0.833333 NA Intergenic Intergenic -78577 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 265.5-11 chr3 148086917 148087422 + 0.833333 NA intron (NR_134937, intron 1 of 1) intron (NR_134937, intron 1 of 1) 9010 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 234.833 chr1 51050663 51051004 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -9004 NR_039617 100616189 NR_039617 ENSG00000265538 MIR4421 - microRNA 4421 ncRNA 148.5-74 chr9 11466776 11466996 + 0.833333 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat 853680 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 223.333-21 chr20 4812839 4813242 + 0.833333 NA intron (NM_014737, intron 2 of 11) intron (NM_014737, intron 2 of 11) 2083 NM_170774 9770 Hs.631504 NM_014737 ENSG00000101265 RASSF2 CENP-34|RASFADIN Ras association domain family member 2 protein-coding 229-8 chr12 14921781 14922272 + 0.833333 NA intron (NM_152321, intron 3 of 6) L1ME3B|LINE|L1 7099 NM_001300784 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 316-11 chr8 84831388 84832188 + 0.833333 NA intron (NM_001287244, intron 3 of 7) intron (NM_001287244, intron 3 of 7) 125861 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 246-9 chr18 10348309 10348808 + 0.833333 NA Intergenic Intergenic 65812 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 208.333-31 chr3 180133812 180134241 + 0.833333 NA Intergenic AluY|SINE|Alu -97089 NM_001349399 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 188.834-3 chr22 41133916 41134533 + 0.833333 NA intron (NM_001429, intron 6 of 30) intron (NM_001429, intron 6 of 30) 41632 NM_001429 2033 Hs.517517 NM_001429 ENSG00000100393 EP300 KAT3B|MKHK2|RSTS2|p300 E1A binding protein p300 protein-coding 155.333-70 chr3 147338285 147338636 + 0.833333 NA Intergenic Intergenic 53970 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 133.5-47 chr4 161391555 161391775 + 0.833333 NA intron (NM_001128428, intron 14 of 14) intron (NM_001128428, intron 14 of 14) -631068 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 199.333-33 chr4 95539287 95539794 + 0.833333 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 9433 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 127.833-34 chr2 21620511 21620964 + 0.833333 NA Intergenic Intergenic 89915 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 134.833-49 chr5 44961741 44962029 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR 152938 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 139.833-15 chr11 130230902 130231093 + 0.833333 NA non-coding (NR_163265, exon 8 of 8) non-coding (NR_163265, exon 8 of 8) 71215 NM_021978 6768 Hs.504315 NM_021978 ENSG00000149418 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 protein-coding 149.667-64 chr5 154153117 154153482 + 0.833333 NA Intergenic L1ME3B|LINE|L1 -37434 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 240.667-46 chr9 103791661 103792165 + 0.833333 NA Intergenic L1ME3C|LINE|L1 -207796 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 139.167-27 chr16 13495088 13495450 + 0.833333 NA Intergenic L1MD2|LINE|L1 -424888 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 151.667-74 chr6 17336215 17336580 + 0.833333 NA Intergenic L1ME2z|LINE|L1 53696 NM_153020 221662 Hs.519904 NM_153020 ENSG00000112183 RBM24 RNPC6|dJ259A10.1 RNA binding motif protein 24 protein-coding 152.167-70 chr7 113597807 113598208 + 0.833333 NA Intergenic MER21B|LTR|ERVL 321002 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 142.833-3 chr10 85370933 85371250 + 0.833333 NA Intergenic Intergenic 61681 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 138.5-83 chr8 125875431 125875768 + 0.833333 NA Intergenic MARNA|DNA|TcMar-Mariner 75598 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 238.5-10 chr14 68051651 68052193 + 0.833333 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 228330 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 150-63 chr4 159971083 159971594 + 0.833333 NA Intergenic L2a|LINE|L2 -193554 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 176.667-24 chr16 76289998 76290438 + 0.833333 NA intron (NR_136213, intron 1 of 23) MIRb|SINE|MIR 12817 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 198-22 chr15 53885859 53886166 + 0.833333 NA Intergenic L1MC3|LINE|L1 -92429 NM_001329919 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 247.833-9 chr5 88090805 88091175 + 0.833333 NA Intergenic Intergenic 177855 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 141.5-84 chr8 116653315 116653630 + 0.833333 NA intron (NR_136278, intron 1 of 1) intron (NR_136278, intron 1 of 1) 1372 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 314-3 chr10 98090493 98091203 + 0.833333 NA Intergenic Charlie15a|DNA|hAT-Charlie -43776 NM_001256620 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 132.167-37 chr2 122144669 122145027 + 0.833333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 389197 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 120.833-51 chr4 19857905 19858087 + 0.833333 NA Intergenic Intergenic -393909 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 155.667-65 chr5 125799939 125800176 + 0.833333 NA Intergenic Intergenic 306796 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 223.333-35 chr7 6379616 6379973 + 0.833333 NA intron (NM_006908, intron 1 of 5) AluSx|SINE|Alu 5267 NM_018890 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|MRD48|Rac-1|TC-25|p21-Rac1 Rac family small GTPase 1 protein-coding 244.333-18 chr3 34172810 34173468 + 0.833333 NA Intergenic L1PA8|LINE|L1 374509 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 223.5-5 chr10 81461136 81461482 + 0.833333 NA Intergenic L1MEc|LINE|L1 -413885 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 138.667-80 chr6 18577540 18578025 + 0.833333 NA intron (NR_149116, intron 3 of 7) intron (NR_149116, intron 3 of 7) 5998 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 181.333-6 chr10 82272629 82273047 + 0.833333 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -39918 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 202-13 chr16 3807539 3807841 + 0.833333 NA intron (NM_004380, intron 3 of 30) MIRb|SINE|MIR 72430 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 134.833-36 chr3 113442297 113442504 + 0.833333 NA promoter-TSS (NM_018338) promoter-TSS (NM_018338) -886 NM_018338 55779 Hs.584936 NM_018338 ENSG00000206530 CFAP44 SPGF20|WDR52 cilia and flagella associated protein 44 protein-coding 245.667-34 chr8 91010518 91011136 + 0.833333 NA intron (NM_018710, intron 4 of 6) L4_A_Mam|LINE|RTE-X -25589 NM_001190972 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 295.333-11 chr3 81184344 81184934 + 0.833333 NA Intergenic Intergenic 190771 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 175.833-8 chr12 126430099 126430423 + 0.833333 NA intron (NR_146291, intron 2 of 2) MER102c|DNA|hAT-Charlie 4115 NR_146291 105370059 NR_146291 LINC02350 - long intergenic non-protein coding RNA 2350 ncRNA 178.833-7 chr10 105083732 105084047 + 0.833333 NA intron (NM_014978, intron 5 of 26) intron (NM_014978, intron 5 of 26) -417673 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 149.667-44 chr2 176985812 176986305 + 0.833333 NA Intergenic Intergenic 226353 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 153.667-64 chr5 171988689 171988875 + 0.833333 NA intron (NM_012300, intron 1 of 12) AluSx1|SINE|Alu 18091 NM_033644 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 125.833-92 chr8 116996988 116997260 + 0.833333 NA intron (NM_001172811, intron 2 of 9) intron (NM_001172811, intron 2 of 9) 46149 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 239.833-4 chr10 11893503 11893969 + 0.833333 NA intron (NR_038222, intron 1 of 5) intron (NR_038222, intron 1 of 5) 974 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 279.167-16 chr9 29792163 29792549 + 0.833333 NA Intergenic Zaphod|DNA|hAT-Tip100 -578755 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 259.333-11 chr20 46657685 46658272 + 0.833333 NA intron (NM_001193340, intron 2 of 12) MSTB|LTR|ERVL-MaLR -6519 NM_001193342 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 187.833-25 chr3 111280726 111280968 + 0.833333 NA Intergenic L1MEd|LINE|L1 209031 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 202.667-15 chr16 54359963 54360285 + 0.833333 NA Intergenic Intergenic 10334 NR_134924 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 197.167-34 chr22 27965241 27965581 + 0.833333 NA intron (NR_026963, intron 2 of 4) L1ME3C|LINE|L1 -44799 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 123.167-90 chr7 15989864 15990039 + 0.833333 NA Intergenic L1PA8|LINE|L1 -220535 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 270-2 chr10 24378331 24378928 + 0.833333 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) -70785 NM_001321681 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 226.5-5 chr1 188347758 188348354 + 0.833333 NA Intergenic Intergenic 904428 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 149.5-55 chr6 61554088 61554458 + 0.833333 NA intron (NR_146870, intron 14 of 15) L1PA15|LINE|L1 -19857 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 124.5-69 chr7 48941991 48942172 + 0.833333 NA Intergenic Intergenic 17534 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 127.833-20 chr13 57720453 57720887 + 0.833333 NA intron (NM_001040429, intron 3 of 3) intron (NM_001040429, intron 3 of 3) 88926 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 123.333-100 chr7 22473762 22474042 + 0.833333 NA intron (NM_001164460, intron 4 of 4) intron (NM_001164460, intron 4 of 4) 26380 NM_001164460 256227 Hs.729825 NM_207342 ENSG00000105889 STEAP1B - STEAP family member 1B protein-coding 261.167-4 chr15 27296596 27297189 + 0.833333 NA intron (NM_001270873, intron 3 of 5) Tigger3b|DNA|TcMar-Tigger -135573 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 221.667-41 chr8 132796520 132796918 + 0.833333 NA intron (NM_198513, intron 4 of 7) intron (NM_198513, intron 4 of 7) 21331 NM_001277196 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 117.167-5 chr1 186478049 186478264 + 0.833333 NA Intergenic Intergenic -17042 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 235.833-7 chr13 89975108 89975441 + 0.833333 NA Intergenic Intergenic 144443 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 291.5-7 chr18 27598919 27599569 + 0.833333 NA Intergenic Intergenic -256588 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 213.167-11 chr19 38153123 38153504 + 0.833333 NA intron (NM_015073, intron 13 of 21) intron (NM_015073, intron 13 of 21) -9783 NR_145800 109623473 NR_145800 SNORD152 - small nucleolar RNA, C/D box 152 snoRNA 212.5-33 chr9 31256879 31257408 + 0.833333 NA Intergenic Intergenic 124347 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 210.667-14 chr14 49478190 49478644 + 0.833333 NA Intergenic MIR|SINE|MIR 107963 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 214.333-2 chr1 22640851 22641288 + 0.833333 NA Intergenic Intergenic -2564 NM_001347620 714 Hs.467753 NM_172369 ENSG00000159189 C1QC C1Q-C|C1QG complement C1q C chain protein-coding 146-38 chr2 140199461 140199702 + 0.833333 NA Intergenic Intergenic 387104 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 116.5-94 chr8 129376541 129376774 + 0.833333 NA intron (NR_130918, intron 1 of 2) intron (NR_130918, intron 1 of 2) 107485 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 123.5-84 chr8 125553696 125553947 + 0.833333 NA Intergenic Intergenic 121612 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 157.167-15 chr10 60341632 60341847 + 0.833333 NA intron (NM_001204403, intron 2 of 43) L2b|LINE|L2 48136 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 216.167-10 chr16 63869868 63870247 + 0.833333 NA Intergenic Intergenic 1252006 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 135.333-95 chr9 102298498 102298930 + 0.833333 NA Intergenic Intergenic -220923 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 168.833-32 chr21 35472871 35473079 + 0.833333 NA intron (NR_073512, intron 1 of 2) (TCTCTC)n|Simple_repeat|Simple_repeat 107789 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 173.5-29 chr18 73146097 73146464 + 0.833333 NA Intergenic L2a|LINE|L2 118218 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 175.833-34 chr4 67473343 67473817 + 0.833333 NA intron (NR_155754, intron 18 of 18) AluJr4|SINE|Alu -51580 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 114.833-31 chr2 44114311 44114582 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie -54357 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 133.167-20 chr15 78486587 78486944 + 0.833333 NA intron (NM_001354994, intron 13 of 21) AluJb|SINE|Alu -20799 NM_001083612 123688 Hs.307962 NM_001013619 ENSG00000188266 HYKK AGPHD1 hydroxylysine kinase protein-coding 118.333-105 chr7 83410008 83410234 + 0.833333 NA intron (NM_001178129, intron 5 of 16) intron (NM_001178129, intron 5 of 16) 231310 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 237.167-12 chr2 192299036 192299510 + 0.833333 NA Intergenic Intergenic -104340 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 254-33 chrX 16791420 16791768 + 0.833333 NA intron (NM_001168683, intron 1 of 7) AluSz|SINE|Alu 5128 NM_018360 55787 Hs.555961 NM_018360 ENSG00000086712 TXLNG CXorf15|ELRG|FIAT|LSR5|TXLNGX taxilin gamma protein-coding 212.5-19 chr3 183805833 183806305 + 0.833333 NA TTS (NR_046727) TTS (NR_046727) 4382 NR_046727 100874113 NR_046727 YEATS2-AS1 - YEATS2 antisense RNA 1 ncRNA 218.833 chr1 77944107 77944493 + 0.833333 NA TTS (NM_144573) TTS (NM_144573) 34772 NR_146540 8880 Hs.567380 NM_003902 ENSG00000162613 FUBP1 FBP|FUBP|hDH V far upstream element binding protein 1 protein-coding 160.5-48 chr5 113919989 113920241 + 0.833333 NA Intergenic MER70A|LTR|ERVL 406421 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 140.5-3 chr1 90905502 90905755 + 0.833333 NA Intergenic L1ME3B|LINE|L1 53869 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 145.5-37 chr2 125504333 125504599 + 0.833333 NA Intergenic L1MA2|LINE|L1 613519 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 255.333-11 chr2 77269836 77270243 + 0.833333 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 252337 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 149.5-30 chr17 44891373 44891693 + 0.833333 NA intron (NM_001142605, intron 1 of 26) AluJo|SINE|Alu 7835 NM_001258353 9343 Hs.151787 NM_004247 ENSG00000108883 EFTUD2 MFDGA|MFDM|SNRNP116|Snrp116|Snu114|U5-116KD elongation factor Tu GTP binding domain containing 2 protein-coding 196.333-28 chr3 114908432 114908698 + 0.833333 NA intron (NM_001348805, intron 3 of 10) L1MEd|LINE|L1 -7940 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 229.833-11 chr2 225718204 225718675 + 0.833333 NA Intergenic AluJo|SINE|Alu 317553 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 122.167-69 chr8 76814122 76814274 + 0.833333 NA intron (NM_024721, intron 4 of 10) AluJr|SINE|Alu -130923 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 155.667-87 chrX 85168365 85168582 + 0.833333 NA intron (NM_001367858, intron 2 of 11) L1PREC2|LINE|L1 -42233 NR_110651 101928128 Hs.636014 NR_110651 LOC101928128 - uncharacterized LOC101928128 ncRNA 151.667-78 chr7 45416898 45417235 + 0.833333 NA Intergenic L1MB3|LINE|L1 -157074 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 374.5-2 chr16 2844696 2845470 + 0.833333 NA Intergenic MamGypLTR3a|LTR|Gypsy -2332 NR_026864 124221 Hs.434388 NM_178453 ENSG00000172460 PRSS30P Disp|TMPRSS8|TMPRSS8P serine protease 30, pseudogene pseudo 288.333-5 chr2 49647577 49648264 + 0.833333 NA Intergenic L1PA17|LINE|L1 326283 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 266-5 chr12 41469308 41469764 + 0.833333 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 31797 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 148.333-18 chr11 85529647 85529842 + 0.833333 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 97526 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 148.5-5 chr1 159855103 159855509 + 0.833333 NA promoter-TSS (NR_147122) promoter-TSS (NR_147122) -269 NR_147124 284677 Hs.647718 NM_001134233 ENSG00000256029 SNHG28 C1orf204|VSIG8-OT1 small nucleolar RNA host gene 28 ncRNA 127.667-93 chr7 150315106 150315299 + 0.833333 NA intron (NM_001363434, intron 1 of 2) L1M5|LINE|L1 5703 NM_001363434 65999 Hs.647119 NM_023942 ENSG00000127399 LRRC61 HSPC295 leucine rich repeat containing 61 protein-coding 188.833-9 chr11 133695097 133695499 + 0.833333 NA Intergenic Intergenic 115078 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 213.833-11 chr15 59944263 59944621 + 0.833333 NA Intergenic AluJo|SINE|Alu -59869 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 162.5-23 chr16 47298273 47298535 + 0.833333 NA intron (NM_030790, intron 10 of 17) L1PB4|LINE|L1 154336 NR_110903 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 174.5-22 chr2 173129040 173129298 + 0.833333 NA intron (NM_133646, intron 2 of 11) AluSq2|SINE|Alu 53323 NM_133646 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 121.667-62 chr3 41439676 41439985 + 0.833333 NA intron (NR_136342, intron 32 of 34) L1M4|LINE|L1 240325 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 148.667-15 chr12 66379164 66379529 + 0.833333 NA exon (NM_001366723, exon 19 of 24) exon (NM_001366723, exon 19 of 24) 76801 NR_135080 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 210.167-24 chr6 151243035 151243435 + 0.833333 NA intron (NM_005100, intron 2 of 4) intron (NM_005100, intron 2 of 4) 3268 NM_005100 9590 Hs.371240 NM_005100 ENSG00000131016 AKAP12 AKAP250|SSeCKS A-kinase anchoring protein 12 protein-coding 184.5-51 chr8 68587722 68588022 + 0.833333 NA intron (NR_146186, intron 7 of 12) L3|LINE|CR1 -256381 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 250.5-18 chr3 163247629 163248371 + 0.833333 NA intron (NR_033945, intron 2 of 6) intron (NR_033945, intron 2 of 6) 55301 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 127.167-58 chr3 110064025 110064479 + 0.833333 NA Intergenic (TCTC)n|Simple_repeat|Simple_repeat 461424 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 286-11 chr5 132232332 132232956 + 0.833333 NA Intergenic Intergenic -4791 NM_001365681 8974 Hs.519568 NM_004199 ENSG00000072682 P4HA2 MYP25 prolyl 4-hydroxylase subunit alpha 2 protein-coding 458.667 chr10 53687054 53687708 + 0.833333 NA Intergenic L2a|LINE|L2 -798849 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 285-9 chr8 109067575 109067949 + 0.833333 NA Intergenic L1MC1|LINE|L1 -18866 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 198-10 chr10 57404570 57405012 + 0.833333 NA Intergenic Intergenic -100232 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 160.833-32 chr3 82382217 82382498 + 0.833333 NA intron (NR_147146, intron 3 of 8) L2a|LINE|L2 396215 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 160.5-26 chr2 22833991 22834238 + 0.833333 NA Intergenic Intergenic 297635 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 259.833-4 chr17 29665968 29666426 + 0.833333 NA intron (NM_033389, intron 10 of 14) AluJb|SINE|Alu -44774 NM_032854 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 218.167-22 chr5 6507017 6507439 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR 58369 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 136.333-19 chr12 39073243 39073551 + 0.833333 NA Intergenic MIRb|SINE|MIR -167806 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 113.333-62 chr20 55560592 55560818 + 0.833333 NA Intergenic Intergenic -133508 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 264-9 chr2 108582505 108582919 + 0.833333 NA intron (NM_001193483, intron 1 of 9) AluSz|SINE|Alu -5594 NM_001193488 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 114.167-92 chr7 130806205 130806479 + 0.833333 NA Intergenic Intergenic 70468 NR_029503 407021 NR_029503 ENSG00000284032 MIR29A MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a microRNA 29a ncRNA 172.167-23 chr17 70784689 70785083 + 0.833333 NA Intergenic Intergenic 417293 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 158.333-14 chr11 57014514 57014724 + 0.833333 NA Intergenic L1MD2|LINE|L1 -22915 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 129.667-33 chr14 58220021 58220270 + 0.833333 NA intron (NM_018477, intron 8 of 12) intron (NM_018477, intron 8 of 12) 19996 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 173.833-36 chr3 29469677 29469911 + 0.833333 NA intron (NM_001003792, intron 2 of 13) L1ME3E|LINE|L1 188482 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 132.333-115 chr9 85920443 85920736 + 0.833333 NA Intergenic AluJb|SINE|Alu -20553 NM_001321881 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 141.667-114 chr9 36219113 36219476 + 0.833333 NA intron (NM_005476, intron 10 of 11) intron (NM_005476, intron 10 of 11) 28373 NM_001184761 1211 Hs.522114 NM_001833 ENSG00000122705 CLTA LCA clathrin light chain A protein-coding 157.167-64 chr8 128977518 128977888 + 0.833333 NA Intergenic MIR|SINE|MIR -11702 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 157-28 chr14 73293899 73294152 + 0.833333 NA intron (NM_001005743, intron 7 of 12) L1MEb|LINE|L1 -48024 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 123.167-85 chr6 39784377 39784682 + 0.833333 NA Intergenic L1M4a2|LINE|L1 -7847 NM_001201427 23500 Hs.357128 NM_015345 ENSG00000146122 DAAM2 dJ90A20A.1 dishevelled associated activator of morphogenesis 2 protein-coding 145.667-47 chr2 34849643 34849926 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR 172227 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 195.167-40 chr8 100922326 100922579 + 0.833333 NA intron (NM_001135700, intron 5 of 5) AluSg7|SINE|Alu 28119 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 202.5-2 chr1 203402673 203403121 + 0.833333 NA Intergenic Intergenic -51775 NR_103757 2331 Hs.519168 NM_002023 ENSG00000122176 FMOD FM|SLRR2E fibromodulin protein-coding 120.667-60 chr2 86534965 86535256 + 0.833333 NA intron (NM_001005753, intron 1 of 4) AluJb|SINE|Alu 28333 NM_016079 51652 Hs.591582 NM_016079 ENSG00000115561 CHMP3 CGI-149|NEDF|VPS24 charged multivesicular body protein 3 protein-coding 191.5-9 chr10 119021727 119022177 + 0.833333 NA Intergenic Intergenic -7762 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 120.167-23 chr15 86617772 86617997 + 0.833333 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -300916 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 154.667-19 chr13 31968282 31968587 + 0.833333 NA Intergenic L1M4c|LINE|L1 63205 NR_103839 100507099 Hs.536364 NR_103839 FRY-AS1 - FRY antisense RNA 1 ncRNA 196.333-49 chr6 155582844 155583363 + 0.833333 NA Intergenic AluSp|SINE|Alu 68259 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 161-14 chr12 70621886 70622122 + 0.833333 NA intron (NM_001109754, intron 3 of 33) intron (NM_001109754, intron 3 of 33) -11980 NM_001206972 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 119-93 chr8 29365505 29365786 + 0.833333 NA Intergenic Intergenic -14961 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 113.833-34 chr19 44782766 44782958 + 0.833333 NA intron (NM_001130852, intron 4 of 9) intron (NM_001130852, intron 4 of 9) 4972 NM_012116 23624 Hs.466907 NM_012116 ENSG00000142273 CBLC CBL-3|CBL-SL|RNF57 Cbl proto-oncogene C protein-coding 129.667-74 chr4 30544060 30544362 + 0.833333 NA Intergenic AluJr4|SINE|Alu -176158 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 166.333-80 chr8 63076722 63077083 + 0.833333 NA intron (NM_000370, intron 1 of 4) L1M4|LINE|L1 9151 NM_000370 7274 Hs.69049 NM_000370 ENSG00000137561 TTPA ATTP|AVED|TTP1|alphaTTP alpha tocopherol transfer protein protein-coding 243.833-19 chr8 118477873 118478359 + 0.833333 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -142885 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 165.5-24 chr15 86689434 86689696 + 0.833333 NA intron (NM_152336, intron 23 of 24) L3|LINE|CR1 -243315 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 241-9 chr17 28998318 28998911 + 0.833333 NA intron (NM_001290202, intron 1 of 16) intron (NM_001290202, intron 1 of 16) 7419 NM_178860 124925 Hs.21837 NM_178860 ENSG00000063015 SEZ6 BSRPC seizure related 6 homolog protein-coding 242.667-17 chr21 14232173 14232618 + 0.833333 NA Intergenic Intergenic 16238 NR_135311 54033 Hs.283828 NM_144770 ENSG00000185272 RBM11 - RNA binding motif protein 11 protein-coding 118.333-5 chr1 119970555 119970763 + 0.833333 NA intron (NM_001200001, intron 5 of 21) intron (NM_001200001, intron 5 of 21) -74144 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 127.167-77 chr6 49861488 49861743 + 0.833333 NA intron (NM_001205220, intron 1 of 7) AluSz|SINE|Alu 4920 NM_170609 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 153.833-52 chr5 61875959 61876369 + 0.833333 NA Intergenic L2|LINE|L2 -140466 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 184.333-51 chr5 175080827 175081139 + 0.833333 NA Intergenic Intergenic -85252 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 216-8 chr15 46266092 46266401 + 0.833333 NA Intergenic Intergenic 561051 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 157.667-72 chr8 91293724 91293985 + 0.833333 NA intron (NM_134266, intron 3 of 18) intron (NM_134266, intron 3 of 18) 44535 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 175.667-32 chr2 98080410 98080759 + 0.833333 NA Intergenic MSTB2|LTR|ERVL-MaLR -6583 NR_144296 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 129.5-79 chr7 27588132 27588473 + 0.833333 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -27672 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 140.667-28 chr15 39592002 39592300 + 0.833333 NA intron (NM_003246, intron 16 of 21) intron (NM_003246, intron 16 of 21) 11072 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 227.5-35 chr8 136368263 136368798 + 0.833333 NA Intergenic Intergenic -162268 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 118.667-74 chr22 38696908 38697131 + 0.833333 NA intron (NM_001360236, intron 2 of 4) intron (NM_001360236, intron 2 of 4) 3924 NM_014876 9929 Hs.3094 NM_014876 ENSG00000100221 JOSD1 dJ508I15.2 Josephin domain containing 1 protein-coding 256.5-34 chr7 53766572 53766938 + 0.833333 NA intron (NR_038371, intron 2 of 5) L1MC1|LINE|L1 45176 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 128-31 chr15 38230444 38230839 + 0.833333 NA Intergenic Intergenic -22195 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 189.333-53 chr8 64531984 64532296 + 0.833333 NA Intergenic Intergenic 45123 NR_015374 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 119.667-24 chr15 85722407 85722856 + 0.833333 NA intron (NM_007200, intron 25 of 36) intron (NM_007200, intron 25 of 36) 36094 NR_120366 101929679 Hs.513112 NR_120366 LOC101929679 - uncharacterized LOC101929679 ncRNA 228.667-16 chr16 82550301 82550692 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -76473 NM_001220488 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 201.333-43 chr8 134125181 134125533 + 0.833333 NA Intergenic Intergenic 238861 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 150.167-49 chr5 29893668 29894032 + 0.833333 NA Intergenic Intergenic 13290 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 168.167 chr1 42602911 42603335 + 0.833333 NA intron (NM_001080850, intron 10 of 16) MLT1A1|LTR|ERVL-MaLR -55300 NM_006347 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 150.333-74 chr4 47962497 47962767 + 0.833333 NA intron (NR_125879, intron 2 of 2) MIRb|SINE|MIR 18901 NM_001142564 1259 Hs.1323 NM_000087 ENSG00000198515 CNGA1 CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 cyclic nucleotide gated channel alpha 1 protein-coding 156.5-10 chr10 11503440 11503651 + 0.833333 NA intron (NM_014688, intron 6 of 14) intron (NM_014688, intron 6 of 14) 28735 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 119.5-29 chr14 44777131 44777277 + 0.833333 NA intron (NR_146457, intron 2 of 4) intron (NR_146457, intron 2 of 4) 21922 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 153.833-22 chr14 69909277 69909544 + 0.833333 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) 29994 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 146-64 chr7 52214425 52214863 + 0.833333 NA Intergenic L1MCa|LINE|L1 -820989 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 219.5-6 chr11 70890348 70890777 + 0.833333 NA intron (NM_012309, intron 10 of 24) AluSp|SINE|Alu -18194 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 166.167-66 chr9 1353496 1353798 + 0.833333 NA Intergenic Intergenic 302160 NM_001370532 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 168.5-28 chr2 82671319 82671649 + 0.833333 NA Intergenic L1M5|LINE|L1 -185319 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 129-60 chr3 173771289 173771578 + 0.833333 NA intron (NM_001365928, intron 3 of 6) intron (NM_001365928, intron 3 of 6) 149363 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 242.333-11 chr20 50235681 50236151 + 0.833333 NA Intergenic Intergenic -31570 NM_001278655 100506115 Hs.235484 NM_001278655 SMIM25 GCRL1|LINC01272 small integral membrane protein 25 protein-coding 119-12 chr10 33543243 33543521 + 0.833333 NA Intergenic L1MCa|LINE|L1 -208477 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 227.833-16 chr5 12167520 12167984 + 0.833333 NA Intergenic Intergenic -263306 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 239-8 chr15 91342316 91342763 + 0.833333 NA Intergenic AluSx1|SINE|Alu -120800 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 121-10 chr10 115649162 115649471 + 0.833333 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 545473 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 143.667-83 chr4 175519743 175519952 + 0.833333 NA Intergenic Intergenic 267829 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 163.5-41 chr21 44625383 44625589 + 0.833333 NA intron (NM_144991, intron 1 of 11) intron (NM_144991, intron 1 of 11) -1607 NM_198690 386676 Hs.474000 NM_198690 ENSG00000221837 KRTAP10-9 KAP10.9|KAP18.9|KRTAP18-9 keratin associated protein 10-9 protein-coding 143.333-30 chr2 29437735 29438217 + 0.833333 NA intron (NM_004304, intron 4 of 28) MIRc|SINE|MIR 37401 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 182.833-14 chr13 22768916 22769385 + 0.833333 NA Intergenic Intergenic 129031 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 137.333-2 chr1 12670469 12670641 + 0.833333 NA Intergenic AluJb|SINE|Alu 26008 NM_001013630 343066 Hs.209954 NM_001013630 ENSG00000204518 AADACL4 - arylacetamide deacetylase like 4 protein-coding 127.167-49 chr2 196488636 196488818 + 0.833333 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) 104256 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 259.167-5 chr2 188019754 188020194 + 0.833333 NA Intergenic THE1D-int|LTR|ERVL-MaLR 267717 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 251.667-6 chr2 72758368 72758714 + 0.833333 NA intron (NR_135774, intron 1 of 19) intron (NR_135774, intron 1 of 19) 67492 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 117-61 chr20 19832113 19832303 + 0.833333 NA Intergenic LTR16B2|LTR|ERVL -54313 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 153.5-69 chr7 55639223 55639561 + 0.833333 NA Intergenic L1M3f|LINE|L1 48640 NR_027340 360132 Hs.446691 NM_182827 ENSG00000176826 FKBP9P1 FKBP9L FKBP prolyl isomerase 9 pseudogene 1 pseudo 115-43 chr2 207894506 207894799 + 0.833333 NA intron (NM_001080475, intron 6 of 7) intron (NM_001080475, intron 6 of 7) -124746 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 121.333-29 chr14 67399998 67400235 + 0.833333 NA intron (NM_016445, intron 1 of 8) intron (NM_016445, intron 1 of 8) 12049 NM_016445 26499 Hs.170473 NM_016445 ENSG00000100558 PLEK2 - pleckstrin 2 protein-coding 133-4 chr1 113526316 113526656 + 0.833333 NA intron (NM_001142782, intron 1 of 20) L2c|LINE|L2 135971 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 183.167-60 chr9 103995307 103995752 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -4180 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 127.667-81 chr6 88735557 88735789 + 0.833333 NA intron (NM_001286428, intron 11 of 13) L1MCa|LINE|L1 -196304 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 141.333-12 chr10 60810893 60811235 + 0.833333 NA Intergenic Intergenic 32586 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 141-90 chr8 139437039 139437270 + 0.833333 NA Intergenic Intergenic 265969 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 148-37 chr18 54203246 54203439 + 0.833333 NA intron (NM_015832, intron 2 of 2) intron (NM_015832, intron 2 of 2) 19070 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 121.167-83 chr7 78828119 78828417 + 0.833333 NA intron (NM_001301128, intron 2 of 20) L1MC3|LINE|L1 -180720 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 206.333-10 chr18 1877717 1878243 + 0.833333 NA Intergenic MIRb|SINE|MIR -518351 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 121.667-34 chr17 20045903 20046309 + 0.833333 NA intron (NM_001243439, intron 1 of 14) intron (NM_001243439, intron 1 of 14) 36747 NM_001243439 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 138.5-28 chr14 75724429 75724720 + 0.833333 NA intron (NM_015072, intron 12 of 31) MIR3|SINE|MIR 63328 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 156.167-33 chr2 76393733 76394101 + 0.833333 NA Intergenic Intergenic -592048 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 197.833-27 chr5 30197127 30197502 + 0.833333 NA Intergenic L2|LINE|L2 316754 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 144.833-7 chr1 187480791 187481128 + 0.833333 NA Intergenic Intergenic 37331 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 256.667-26 chr8 71037571 71038104 + 0.833333 NA Intergenic Intergenic 318869 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 174.667-61 chr7 2705010 2705363 + 0.833333 NA intron (NM_133463, intron 3 of 6) L1MEg|LINE|L1 16984 NM_001321766 155185 Hs.42221 NM_133463 ENSG00000174945 AMZ1 - archaelysin family metallopeptidase 1 protein-coding 196.167-3 chr10 14510544 14510874 + 0.833333 NA Intergenic L1MB7|LINE|L1 22005 NM_001320741 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 121.5-43 chr15 94506478 94506633 + 0.833333 NA Intergenic L1MA5|LINE|L1 150625 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 168.667-33 chr2 64718337 64718952 + 0.833333 NA Intergenic Intergenic -64731 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 301.333-5 chr14 42336387 42336915 + 0.833333 NA Intergenic L2a|LINE|L2 729795 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 187.333-36 chr2 138969394 138969777 + 0.833333 NA Intergenic L1MB4|LINE|L1 72261 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 220.833-25 chr8 123146434 123146975 + 0.833333 NA intron (NM_001363151, intron 19 of 19) AluSz6|SINE|Alu -32343 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 252.667-26 chr8 79356103 79356522 + 0.833333 NA Intergenic Intergenic 24124 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 209.667-33 chr5 130560977 130561358 + 0.833333 NA Intergenic L1PA15|LINE|L1 604089 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 259.833-14 chr7 119774945 119775374 + 0.833333 NA intron (NR_131961, intron 3 of 3) intron (NR_131961, intron 3 of 3) 132216 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 231.667-27 chr7 42448941 42449351 + 0.833333 NA Intergenic Intergenic -211937 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 124.667-129 chr9 73924748 73925139 + 0.833333 NA Intergenic Intergenic -446588 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 208-41 chr8 80048733 80049066 + 0.833333 NA intron (NM_001287142, intron 4 of 6) intron (NM_001287142, intron 4 of 6) -18640 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 188.167-11 chr14 62822267 62822592 + 0.833333 NA intron (NM_139318, intron 8 of 10) L1MD|LINE|L1 223029 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 155.833-66 chr8 24584558 24584936 + 0.833333 NA Intergenic Intergenic -36129 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 127-56 chr2 221663938 221664325 + 0.833333 NA Intergenic Intergenic -89929 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 162.333-78 chr9 108614946 108615470 + 0.833333 NA Intergenic Intergenic 240778 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 134.833-34 chr3 43924199 43924441 + 0.833333 NA Intergenic Intergenic -189892 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 122.167-26 chr17 27660335 27660628 + 0.833333 NA Intergenic Intergenic 29293 NM_009587 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 194.167-12 chr14 47614317 47614725 + 0.833333 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 60433 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 228.833-12 chr21 18007892 18008360 + 0.833333 NA intron (NM_001204177, intron 1 of 4) intron (NM_001204177, intron 1 of 4) 90786 NM_001204176 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 133.167-23 chr16 4787654 4787876 + 0.833333 NA promoter-TSS (NM_001253791) promoter-TSS (NM_001253791) 580 NM_144605 124404 Hs.126780 NM_144605 ENSG00000140623 SEPTIN12 SEPT12|SPGF10 septin 12 protein-coding 151.333-38 chr18 33024865 33025177 + 0.833333 NA intron (NM_001308126, intron 21 of 23) L1MD1|LINE|L1 -251998 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 184.167-17 chr13 26189406 26189750 + 0.833333 NA intron (NM_183045, intron 5 of 5) intron (NM_183045, intron 5 of 5) 32179 NM_183044 6049 Hs.136885 NM_005977 ENSG00000127870 RNF6 - ring finger protein 6 protein-coding 138.167-34 chr18 49067831 49068092 + 0.833333 NA intron (NM_001353210, intron 16 of 16) intron (NM_001353210, intron 16 of 16) -18193 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 123.333-17 chr10 65423291 65423650 + 0.833333 NA Intergenic L1MEf|LINE|L1 -147955 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 210.333-2 chr1 197724953 197725310 + 0.833333 NA intron (NR_125340, intron 2 of 19) L1MEd|LINE|L1 50349 NM_001300858 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 136.333-62 chr3 121115784 121116031 + 0.833333 NA intron (NR_145517, intron 6 of 8) MSTA|LTR|ERVL-MaLR 66267 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 143.833-28 chr3 69316453 69316747 + 0.833333 NA intron (NM_015123, intron 1 of 22) intron (NM_015123, intron 1 of 22) 69488 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 143.167-33 chr2 58721707 58722005 + 0.833333 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 201103 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 154.833-26 chr2 23832074 23832377 + 0.833333 NA intron (NR_125717, intron 14 of 28) intron (NR_125717, intron 14 of 28) 94898 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 161-76 chr8 67531134 67531371 + 0.833333 NA intron (NM_020361, intron 2 of 10) intron (NM_020361, intron 2 of 10) 187418 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 263.167-5 chr17 49771377 49772027 + 0.833333 NA Intergenic Intergenic -7571 NM_030802 81558 Hs.514308 NM_030802 ENSG00000121104 FAM117A - family with sequence similarity 117 member A protein-coding 246.167-17 chr22 49794906 49795433 + 0.833333 NA intron (NM_001349942, intron 6 of 12) intron (NM_001349942, intron 6 of 12) 29162 NM_001349940 23774 Hs.127950 NM_014577 ENSG00000100425 BRD1 BRL|BRPF1|BRPF2 bromodomain containing 1 protein-coding 164.5-35 chr2 128131711 128131961 + 0.833333 NA intron (NR_027671, intron 13 of 40) AluSc|SINE|Alu 40636 NM_020120 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 150-66 chr5 54717478 54717825 + 0.833333 NA intron (NR_104658, intron 1 of 2) L1MA9|LINE|L1 -14327 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 138.333-53 chr18 2537485 2537721 + 0.833333 NA TTS (NM_001308401) TTS (NM_001308401) 33902 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 220.833-2 chr10 52004028 52004759 + 0.833333 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) -304798 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 316-9 chr6 55347377 55348010 + 0.833333 NA intron (NM_207410, intron 3 of 8) L2c|LINE|L2 20224 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 201.833-13 chr2 229611129 229611441 + 0.833333 NA intron (NM_139072, intron 1 of 12) MER119|DNA|hAT-Charlie 103270 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 189.833-22 chr3 116733137 116733544 + 0.833333 NA Intergenic L2a|LINE|L2 23552 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 238-24 chr5 67079815 67080162 + 0.833333 NA intron (NM_001297651, intron 2 of 25) intron (NM_001297651, intron 2 of 25) 75333 NM_001297651 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 187-7 chr10 126789530 126789826 + 0.833333 NA Intergenic L1MCa|LINE|L1 -115731 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 130-23 chr12 8775069 8775234 + 0.833333 NA 3' UTR (NM_001352267, exon 6 of 6) 3' UTR (NM_001352267, exon 6 of 6) -47470 NM_144670 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 193.5-31 chr3 2560492 2560913 + 0.833333 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 321873 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 245.667-5 chr11 96530674 96531195 + 0.833333 NA Intergenic L1PA13|LINE|L1 22509 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 146.5-63 chr4 102717033 102717235 + 0.833333 NA intron (NM_005908, intron 4 of 16) intron (NM_005908, intron 4 of 16) 43834 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 205.333-48 chr5 67125218 67125503 + 0.833333 NA intron (NM_001297651, intron 11 of 25) L1PA7|LINE|L1 71439 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 171.167-32 chr21 24243271 24243530 + 0.833333 NA Intergenic Intergenic 77977 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 117.667-88 chr4 46812988 46813214 + 0.833333 NA intron (NM_130902, intron 2 of 2) L1MA9|LINE|L1 96144 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 210.5-12 chr12 129762190 129762540 + 0.833333 NA intron (NM_133448, intron 1 of 8) intron (NM_133448, intron 1 of 8) 141660 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 149.833-53 chr7 95748367 95748885 + 0.833333 NA Intergenic Intergenic -23880 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 127.833-10 chr11 35193227 35193435 + 0.833333 NA intron (NM_001202556, intron 5 of 7) MER30|DNA|hAT-Charlie 30381 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 191.833-9 chr17 13971405 13971678 + 0.833333 NA Intergenic HERV4_I-int|LTR|ERV1 -52957 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 145.667-70 chr4 37240225 37240573 + 0.833333 NA Intergenic Intergenic 1592 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 224.333-20 chr20 41200392 41200946 + 0.833333 NA intron (NM_015035, intron 3 of 3) intron (NM_015035, intron 3 of 3) 31646 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 170.833-26 chr3 117133468 117133858 + 0.833333 NA Intergenic MER112|DNA|hAT-Charlie 212232 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 203-7 chr12 9187273 9187516 + 0.833333 NA intron (NM_002864, intron 13 of 35) L1PREC2|LINE|L1 21001 NM_002864 5858 Hs.707491 NM_002864 ENSG00000126838 PZP CPAMD6 PZP alpha-2-macroglobulin like protein-coding 185.167 chr10 16888744 16889271 + 0.833333 NA intron (NM_001081, intron 55 of 66) intron (NM_001081, intron 55 of 66) -71553 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 128-53 chr2 165196793 165197071 + 0.833333 NA intron (NM_006922, intron 1 of 27) intron (NM_006922, intron 1 of 27) 7118 NM_006922 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 178.167-24 chr2 111213058 111213542 + 0.833333 NA intron (NR_015395, intron 5 of 6) L1ME1|LINE|L1 92386 NM_001204108 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 183.833-21 chr19 35870079 35870621 + 0.833333 NA intron (NM_001024807, intron 2 of 16) intron (NM_001024807, intron 2 of 16) 1905 NM_001024807 333 Hs.74565 NM_005166 ENSG00000105290 APLP1 APLP amyloid beta precursor like protein 1 protein-coding 223.333-41 chr8 53173869 53174248 + 0.833333 NA Intergenic Intergenic 77579 NM_000912 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 128.5-19 chr12 93774699 93775060 + 0.833333 NA intron (NM_001320100, intron 2 of 2) intron (NM_001320100, intron 2 of 2) -37056 NR_110092 101928731 Hs.659971 NR_110092 ENSG00000258274 LOC101928731 - uncharacterized LOC101928731 ncRNA 119.167-82 chr6 18424576 18424838 + 0.833333 NA intron (NM_182757, intron 2 of 7) intron (NM_182757, intron 2 of 7) 37357 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 150.5-53 chr4 33293378 33293621 + 0.833333 NA Intergenic L1MC4|LINE|L1 746394 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 133.333-100 chr5 144350224 144350492 + 0.833333 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 144967 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 288.833-8 chr5 166924056 166924552 + 0.833333 NA intron (NR_108020, intron 1 of 2) intron (NR_108020, intron 1 of 2) 2066 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 220.333-32 chr9 112237144 112237483 + 0.833333 NA intron (NM_001244896, intron 6 of 12) intron (NM_001244896, intron 6 of 12) -62016 NM_022486 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 229.167-13 chr14 60266132 60266489 + 0.833333 NA intron (NM_177951, intron 2 of 3) L1M6|LINE|L1 17089 NM_177951 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 163.333-74 chr7 122752520 122752977 + 0.833333 NA intron (NM_001167940, intron 1 of 29) intron (NM_001167940, intron 1 of 29) -49826 NM_198085 378925 Hs.675191 NM_198085 ENSG00000235631 RNF148 - ring finger protein 148 protein-coding 166.5-47 chr4 98296195 98296434 + 0.833333 NA intron (NM_021159, intron 2 of 14) intron (NM_021159, intron 2 of 14) 34930 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 146.167-82 chrX 142510902 142511203 + 0.833333 NA Intergenic MER5A1|DNA|hAT-Charlie -305762 NM_016249 51438 Hs.123536 NM_016249 ENSG00000046774 MAGEC2 CT10|HCA587|MAGEE1 MAGE family member C2 protein-coding 173.833-65 chrX 126397769 126398003 + 0.833333 NA Intergenic L1MA9|LINE|L1 154928 NM_178470 139170 Hs.120403 NM_178470 ENSG00000198889 DCAF12L1 KIAA1892L|WDR40B DDB1 and CUL4 associated factor 12 like 1 protein-coding 321.167-4 chr17 61629335 61629978 + 0.833333 NA Intergenic L1MD|LINE|L1 -38437 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 172-41 chr20 36151486 36151859 + 0.833333 NA intron (NR_147703, intron 2 of 3) intron (NR_147703, intron 2 of 3) -3068 NM_012156 2036 Hs.437422 NM_012156 ENSG00000088367 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1 like 1 protein-coding 167.167-8 chr10 16708518 16709261 + 0.833333 NA intron (NM_152724, intron 6 of 7) L1MA6|LINE|L1 108535 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 128.167-75 chr6 115909489 115909778 + 0.833333 NA Intergenic L1MA4|LINE|L1 -129098 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 244.5-9 chr17 34396097 34396698 + 0.833333 NA Intergenic Intergenic -33164 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 148.833-47 chr5 14458898 14459247 + 0.833333 NA intron (NM_007118, intron 34 of 56) intron (NM_007118, intron 34 of 56) -4911 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 191-39 chr21 29331674 29332018 + 0.833333 NA intron (NR_027655, intron 4 of 7) MIR|SINE|MIR 26642 NR_027655 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 232.333-32 chr7 15357761 15358150 + 0.833333 NA intron (NM_001004320, intron 12 of 12) A-rich|Low_complexity|Low_complexity 204060 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 198.5-36 chr6 28190365 28190746 + 0.833333 NA Intergenic MER63C|DNA|hAT-Blackjack 28374 NR_002936 222699 Hs.161441 NR_002936 TOB2P1 TOB2P|TOB4p|p373c6.3 transducer of ERBB2, 2 pseudogene 1 pseudo 182.167-14 chr14 60276799 60277192 + 0.833333 NA intron (NM_177951, intron 2 of 3) intron (NM_177951, intron 2 of 3) 27774 NM_177951 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 214.667-3 chr1 77614694 77615075 + 0.833333 NA intron (NM_001308237, intron 4 of 13) 5S|rRNA|rRNA 67774 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 127.5-62 chr6 115908863 115909099 + 0.833333 NA Intergenic Intergenic -129750 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 119.833-64 chr4 72523174 72523348 + 0.833333 NA intron (NM_014243, intron 3 of 21) intron (NM_014243, intron 3 of 21) 45960 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 134.333-66 chr2 162364897 162365095 + 0.833333 NA Intergenic Intergenic 20628 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 117-50 chr2 82044613 82044983 + 0.833333 NA Intergenic L1MA8|LINE|L1 -577852 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 129.5-16 chr11 91570325 91570671 + 0.833333 NA Intergenic L1MDa|LINE|L1 -654536 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 324-2 chr12 96821929 96822529 + 0.833333 NA intron (NM_001306084, intron 65 of 67) intron (NM_001306084, intron 65 of 67) -85028 NM_152905 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 114.833-54 chr5 79393811 79394071 + 0.833333 NA intron (NM_001277078, intron 5 of 5) intron (NM_001277078, intron 5 of 5) 119895 NM_001277078 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 276.5 chr1 157427893 157428499 + 0.833333 NA Intergenic L1M5|LINE|L1 124319 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 136.667-32 chr17 67138112 67138284 + 0.833333 NA intron (NM_001330447, intron 21 of 32) intron (NM_001330447, intron 21 of 32) 93644 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 165.167-54 chr8 60320007 60320544 + 0.833333 NA Intergenic Intergenic -38875 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 121.833-6 chr1 247554265 247554578 + 0.833333 NA intron (NM_001281835, intron 3 of 5) L1M5|LINE|L1 5287 NM_145278 148823 Hs.732113 NM_145278 ENSG00000169224 GCSAML C1orf150 germinal center associated signaling and motility like protein-coding 153-2 chr1 70417025 70417214 + 0.833333 NA intron (NM_001190463, intron 2 of 10) intron (NM_001190463, intron 2 of 10) 5851 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 129.833-35 chr2 56480082 56480311 + 0.833333 NA Intergenic AluY|SINE|Alu -294426 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 139.167-61 chr6 142379165 142379346 + 0.833333 NA intron (NM_198569, intron 4 of 24) intron (NM_198569, intron 4 of 24) 77248 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 125.167-70 chr6 149827254 149827491 + 0.833333 NA intron (NM_032832, intron 5 of 6) intron (NM_032832, intron 5 of 6) -36126 NR_045126 100652739 Hs.642734 NR_045126 ENSG00000223701 RAET1E-AS1 RAET1G-AS1 RAET1E antisense RNA 1 ncRNA 197-14 chr14 53186680 53187045 + 0.833333 NA Intergenic Intergenic 33508 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 166.167-39 chr4 123154321 123154622 + 0.833333 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) 231393 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 198.833-2 chr10 26444006 26444400 + 0.833333 NA intron (NM_019043, intron 2 of 14) L2a|LINE|L2 5862 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 171.667-81 chr7 90032038 90032459 + 0.833333 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -87152 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 255.667-15 chr2 74434931 74435473 + 0.833333 NA intron (NM_001015055, intron 1 of 11) intron (NM_001015055, intron 1 of 11) 5381 NM_001015056 6242 Hs.192854 NM_033046 ENSG00000114993 RTKN - rhotekin protein-coding 130.667-40 chr2 126932436 126932793 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger 33724 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 198-39 chr3 147803973 147804384 + 0.833333 NA Intergenic MER20|DNA|hAT-Charlie -273981 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 282.667-7 chr13 95040589 95041223 + 0.833333 NA intron (NM_005845, intron 29 of 30) intron (NM_005845, intron 29 of 30) 80865 NR_047487 100861544 Hs.48706 NR_047487 ENSG00000260962 LINC00557 - long intergenic non-protein coding RNA 557 ncRNA 146.667-84 chr7 24066814 24067183 + 0.833333 NA Intergenic MER90|LTR|ERV1 -217192 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 136-77 chr7 42930181 42930484 + 0.833333 NA intron (NM_002787, intron 1 of 7) AluJo|SINE|Alu 1842 NM_002787 5683 Hs.333786 NM_002787 ENSG00000106588 PSMA2 HC3|MU|PMSA2|PSC2 proteasome subunit alpha 2 protein-coding 144.667-26 chr12 11575153 11575402 + 0.833333 NA Intergenic Intergenic 27247 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 228.333-24 chr5 4033104 4033569 + 0.833333 NA Intergenic L1PA10|LINE|L1 437504 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 147.333-55 chr3 69508274 69508731 + 0.833333 NA Intergenic Intergenic -122414 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 154.5-6 chr10 51903308 51903646 + 0.833333 NA intron (NM_001098512, intron 4 of 17) L1MC5a|LINE|L1 -203882 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 128.667-27 chr11 99979082 99979266 + 0.833333 NA intron (NM_001243270, intron 7 of 23) L2c|LINE|L2 423029 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 340.334-2 chr8 120588157 120589366 + 0.833333 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) 143342 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 121.667-52 chr2 35850399 35850630 + 0.833333 NA Intergenic L1MC|LINE|L1 379109 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 152.833-18 chr16 11770568 11770951 + 0.833333 NA intron (NM_014153, intron 10 of 22) intron (NM_014153, intron 10 of 22) 26499 NM_014153 29066 Hs.371856 NM_014153 ENSG00000122299 ZC3H7A HSPC055|ZC3H7|ZC3HDC7 zinc finger CCCH-type containing 7A protein-coding 211-37 chr9 26908965 26909357 + 0.833333 NA intron (NM_001321546, intron 11 of 12) intron (NM_001321546, intron 11 of 12) -16333 NM_001167575 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 128.5-52 chr3 35519347 35519553 + 0.833333 NA Intergenic Intergenic -120075 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 172.833-52 chr8 79105657 79106101 + 0.833333 NA Intergenic L2a|LINE|L2 -226309 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 313.333-4 chr21 34704338 34704859 + 0.833333 NA intron (NM_053277, intron 1 of 5) intron (NM_053277, intron 1 of 5) 32584 NR_024351 54064 Hs.436868 NR_024351 ENSG00000230978 LINC00160 C21orf52|NCRNA00160 long intergenic non-protein coding RNA 160 ncRNA 303.667-2 chr10 19189175 19189661 + 0.833333 NA intron (NM_001142308, intron 14 of 39) L1MB1|LINE|L1 140617 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 137.333-15 chr11 92585952 92586213 + 0.833333 NA intron (NM_001008781, intron 2 of 24) L1MC4|LINE|L1 233986 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 188.333-55 chr6 164686052 164686317 + 0.833333 NA Intergenic AluY|SINE|Alu 135879 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 243.167-13 chr5 30793854 30794506 + 0.833333 NA Intergenic Intergenic -399506 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 155.167-33 chr4 34345436 34345866 + 0.833333 NA Intergenic Intergenic -75904 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 179.833-8 chr12 28429666 28430115 + 0.833333 NA intron (NM_001352082, intron 9 of 13) L1ME1|LINE|L1 -239152 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 267.667-2 chr10 17701818 17702221 + 0.833333 NA intron (NM_001324284, intron 10 of 14) Charlie2b|DNA|hAT-Charlie -50182 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 136.833-78 chr8 101835017 101835234 + 0.833333 NA intron (NM_001040628, intron 4 of 7) Charlie15a|DNA|hAT-Charlie -44156 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 209.834-4 chr15 69440933 69441608 + 0.833333 NA intron (NM_001281301, intron 17 of 20) intron (NM_001281301, intron 17 of 20) -11548 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 182.167-4 chr1 183061090 183061464 + 0.833333 NA intron (NM_002293, intron 1 of 27) intron (NM_002293, intron 1 of 27) 37857 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 146.167-4 chr1 110645369 110645711 + 0.833333 NA Intergenic Intergenic -14100 NM_001204269 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 137.5-80 chr5 96637842 96638030 + 0.833333 NA Intergenic Intergenic -24101 NM_001042442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 143.833-9 chr12 40112632 40112906 + 0.833333 NA Intergenic Intergenic -6688 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 218.833-11 chr15 57786528 57786835 + 0.833333 NA Intergenic L1MB3|LINE|L1 79967 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 219.333-11 chr13 102867279 102867783 + 0.833333 NA intron (NM_000123, intron 11 of 14) L2a|LINE|L2 -12568 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 236.667-6 chr11 8885478 8885902 + 0.833333 NA intron (NM_005418, intron 1 of 22) intron (NM_005418, intron 1 of 22) 25261 NM_005418 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 144.667-32 chr12 125650640 125650900 + 0.833333 NA exon (NM_001286219, exon 3 of 5) exon (NM_001286219, exon 3 of 5) 28318 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 125.5-27 chr17 21979512 21979820 + 0.833333 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat -223329 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 137.833-29 chr4 65963347 65963585 + 0.833333 NA Intergenic Intergenic -292971 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 141.333-26 chr14 28106193 28106362 + 0.833333 NA Intergenic MLT1H2|LTR|ERVL-MaLR -433056 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 167.833-15 chr14 42935642 42936020 + 0.833333 NA Intergenic Intergenic 1328975 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 167.833-59 chr9 73916673 73916908 + 0.833333 NA Intergenic HAL1ME|LINE|L1 -454741 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 170-9 chr12 7478097 7478464 + 0.833333 NA intron (NR_163255, intron 16 of 16) L1ME4b|LINE|L1 25497 NM_001370146 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 248.333 chr1 115295916 115296361 + 0.833333 NA intron (NM_002506, intron 1 of 2) L2c|LINE|L2 13104 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 200.833-8 chr14 64908845 64909169 + 0.833333 NA Intergenic Intergenic -5354 NM_001202559 100529261 Hs.325531 NM_001202558 ENSG00000125954 CHURC1-FNTB FNTB|FTase-beta CHURC1-FNTB readthrough protein-coding 171.167-13 chr10 100212265 100212502 + 0.833333 NA intron (NM_001278, intron 9 of 20) L1MA9|LINE|L1 17213 NM_001278 1147 Hs.198998 NM_001278 ENSG00000213341 CHUK IKBKA|IKK-alpha|IKK1|IKKA|NFKBIKA|TCF16 component of inhibitor of nuclear factor kappa B kinase complex protein-coding 174.167-38 chr7 77586763 77587193 + 0.833333 NA intron (NM_001131009, intron 4 of 16) Tigger1|DNA|TcMar-Tigger 48935 NM_001131009 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 180.167-38 chr4 20998560 20999087 + 0.833333 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -14814 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 128.167-66 chr5 51074733 51074988 + 0.833333 NA Intergenic Intergenic -104673 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 211-29 chr4 181861285 181861875 + 0.833333 NA Intergenic (TTCTTTC)n|Simple_repeat|Simple_repeat -31607 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 193.667-33 chr22 46813950 46814308 + 0.833333 NA intron (NM_001284305, intron 4 of 12) intron (NM_001284305, intron 4 of 12) 40202 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 168.167-13 chr12 47202781 47203098 + 0.833333 NA intron (NM_001281429, intron 2 of 2) intron (NM_001281429, intron 2 of 2) 13504 NR_026544 100233209 Hs.657722 NR_026544 ENSG00000247774 PCED1B-AS1 - PCED1B antisense RNA 1 ncRNA 249-10 chr2 44727718 44728186 + 0.833333 NA intron (NM_024766, intron 7 of 10) AluJb|SINE|Alu 210936 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 340.833-3 chr17 60296596 60297277 + 0.833333 NA intron (NM_032582, intron 3 of 33) MER49|LTR|ERV1 -65291 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 205.5-26 chr22 33748795 33749051 + 0.833333 NA intron (NR_038949, intron 9 of 9) MIR3|SINE|MIR 23937 NR_038950 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 159-51 chr3 35840071 35840336 + 0.833333 NA Intergenic L2c|LINE|L2 95727 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 183.167-45 chr5 52528112 52528388 + 0.833333 NA Intergenic Intergenic -259666 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 120.333-20 chr10 71985479 71985725 + 0.833333 NA intron (NM_004273, intron 1 of 2) intron (NM_004273, intron 1 of 2) 21207 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 230.667-19 chr4 32031894 32032244 + 0.833333 NA intron (NR_125936, intron 1 of 2) MER39|LTR|ERV1 -9647 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 264.833-4 chr10 66891186 66891547 + 0.833333 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -34670 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 200.167-7 chr10 56509014 56509449 + 0.833333 NA Intergenic THE1B-int|LTR|ERVL-MaLR -147958 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 212.333-36 chr7 55193153 55193666 + 0.833333 NA intron (NM_001346941, intron 16 of 21) intron (NM_001346941, intron 16 of 21) -4460 NR_047551 100507500 Hs.720489 NR_047551 ENSG00000224057 EGFR-AS1 - EGFR antisense RNA 1 ncRNA 139.667-102 chrX 126654871 126655092 + 0.833333 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -102167 NM_178470 139170 Hs.120403 NM_178470 ENSG00000198889 DCAF12L1 KIAA1892L|WDR40B DDB1 and CUL4 associated factor 12 like 1 protein-coding 154.167-8 chr10 83183468 83183767 + 0.833333 NA Intergenic Intergenic 493472 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 241.5-12 chr2 63487203 63487647 + 0.833333 NA intron (NR_148704, intron 4 of 18) intron (NR_148704, intron 4 of 18) -49418 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 116.833-42 chr4 65458020 65458362 + 0.833333 NA intron (NM_001281767, intron 5 of 16) intron (NM_001281767, intron 5 of 16) 211297 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 248.167-12 chr17 17231542 17231864 + 0.833333 NA intron (NM_001353230, intron 3 of 14) intron (NM_001353230, intron 3 of 14) 5465 NM_144997 201163 Hs.31652 NM_144606 ENSG00000154803 FLCN BHD|DENND8B|FLCL folliculin protein-coding 323.167-2 chr5 11302423 11303203 + 0.833333 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 286104 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 179.833-27 chr4 183162301 183162722 + 0.833333 NA intron (NM_024949, intron 1 of 22) intron (NM_024949, intron 1 of 22) 63254 NM_024949 80014 Hs.333179 NM_024949 ENSG00000151718 WWC2 BOMB WW and C2 domain containing 2 protein-coding 179.167-8 chr10 74679282 74679524 + 0.833333 NA intron (NM_001369124, intron 9 of 9) Charlie18a|DNA|hAT-Charlie -145852 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 189.167-24 chr18 63549487 63549872 + 0.833333 NA Intergenic Intergenic -6481 NM_001307928 89777 Hs.348541 NM_080474 ENSG00000166634 SERPINB12 YUKOPIN serpin family B member 12 protein-coding 168.667-22 chr15 57155698 57155953 + 0.833333 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -63605 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 141-44 chr2 89816007 89816347 + 0.833333 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -178270 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 190.5-9 chr11 74791965 74792342 + 0.833333 NA intron (NM_001098638, intron 2 of 5) intron (NM_001098638, intron 2 of 5) 43304 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 325.833-3 chr12 46965895 46966429 + 0.833333 NA Intergenic Intergenic -113441 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 158.167-43 chr6 51411495 51411914 + 0.833333 NA Intergenic Intergenic -210166 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 127.833-11 chr11 66648266 66648581 + 0.833333 NA intron (NM_001198844, intron 2 of 2) AluJb|SINE|Alu 9720 NM_001198844 5936 Hs.523822 NM_002896 ENSG00000173933 RBM4 LARK|RBM4A|ZCCHC21|ZCRB3A RNA binding motif protein 4 protein-coding 120.167-65 chr5 118448945 118449313 + 0.833333 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 112988 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 198-11 chr10 63204673 63204969 + 0.833333 NA intron (NM_001322258, intron 9 of 24) intron (NM_001322258, intron 9 of 24) 64402 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 183.667-81 chr8 83707584 83707969 + 0.833333 NA Intergenic L2|LINE|L2 304018 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 117-93 chr5 132901060 132901289 + 0.833333 NA intron (NM_014423, intron 7 of 20) intron (NM_014423, intron 7 of 20) 27506 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 124.833-13 chr11 80831788 80832060 + 0.833333 NA Intergenic Intergenic -69121 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 117.167-66 chr3 115620346 115620584 + 0.833333 NA Intergenic Intergenic -3045 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 161.167-54 chr7 120489344 120489790 + 0.833333 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 216392 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 156.5-54 chr22 24024932 24025137 + 0.833333 NA intron (NM_001199281, intron 1 of 36) L1MC4a|LINE|L1 13664 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 150.167-8 chr11 79259709 79259985 + 0.833333 NA intron (NM_001098816, intron 2 of 33) intron (NM_001098816, intron 2 of 33) 142262 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 232.667-6 chr12 24202077 24202404 + 0.833333 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -10181 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 172.667-43 chr20 51341626 51342020 + 0.833333 NA Intergenic Intergenic 111154 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 293.833-5 chr3 52925101 52925753 + 0.833333 NA intron (NM_016329, intron 10 of 20) HAL1|LINE|L1 -27879 NM_198563 375346 Hs.744189 NM_198563 ENSG00000213533 STIMATE TMEM110 STIM activating enhancer protein-coding 169.167-23 chr18 77698732 77699059 + 0.833333 NA Intergenic L1ME2z|LINE|L1 294832 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 176.834-2 chr14 42299227 42299795 + 0.833333 NA Intergenic Intergenic 692655 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 180.667-3 chr1 164029088 164029477 + 0.833333 NA Intergenic ERVL-B4-int|LTR|ERVL -530078 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 141.667-52 chr2 188312293 188312480 + 0.833333 NA intron (NR_045563, intron 2 of 12) L1PA8A|LINE|L1 14894 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 134.667-61 chr22 28126812 28127074 + 0.833333 NA intron (NM_001145418, intron 6 of 22) FLAM_A|SINE|Alu -206331 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 156-33 chr15 70950589 70950910 + 0.833333 NA intron (NM_017691, intron 8 of 15) L1PA16|LINE|L1 58306 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 202.5-8 chr14 73290915 73291392 + 0.833333 NA intron (NM_001005743, intron 8 of 12) AluSx1|SINE|Alu -45152 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 210.667-16 chr15 56686121 56686614 + 0.833333 NA intron (NM_001002843, intron 8 of 20) AluSx|SINE|Alu 47719 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 184.833-10 chr18 2787446 2787795 + 0.833333 NA intron (NM_015295, intron 45 of 47) intron (NM_015295, intron 45 of 47) -59386 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 133.333-69 chr22 45166201 45166376 + 0.833333 NA intron (NM_153645, intron 1 of 8) AluSz|SINE|Alu 1617 NM_153645 10762 Hs.475103 NM_007172 ENSG00000093000 NUP50 NPAP60|NPAP60L nucleoporin 50 protein-coding 182-47 chr6 82417247 82417669 + 0.833333 NA Intergenic Intergenic 53214 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 228.167-18 chr4 62701762 62702136 + 0.833333 NA Intergenic L2a|LINE|L2 -540184 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 274.833-9 chr9 536323 536885 + 0.833333 NA intron (NM_001354331, intron 1 of 10) MLT1D|LTR|ERVL-MaLR 32049 NM_001354331 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 318.5-10 chr3 128192570 128193052 + 0.833333 NA intron (NM_021937, intron 1 of 6) intron (NM_021937, intron 1 of 6) -38897 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 171-69 chr9 68704003 68704249 + 0.833333 NA Intergenic Intergenic -1114 NM_003558 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 198.833-29 chr9 30990289 30990740 + 0.833333 NA Intergenic Intergenic 390976 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 233.333-8 chr14 62835858 62836255 + 0.833333 NA intron (NM_139318, intron 8 of 10) intron (NM_139318, intron 8 of 10) 209402 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 169.167-37 chr6 148754953 148755260 + 0.833333 NA intron (NM_005715, intron 1 of 7) intron (NM_005715, intron 1 of 7) 8076 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 150.333-2 chr1 48979282 48979690 + 0.833333 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -202517 NM_001349795 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 157.833-21 chr14 37862206 37862588 + 0.833333 NA Intergenic Intergenic 39727 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 152.333-22 chr15 68242976 68243334 + 0.833333 NA Intergenic HUERS-P1-int|LTR|ERV1 -13427 NM_017882 54982 Hs.584921 NM_017882 ENSG00000128973 CLN6 CLN4A|HsT18960|nclf CLN6 transmembrane ER protein protein-coding 187-41 chr6 139351795 139352055 + 0.833333 NA Intergenic Intergenic 22288 NM_001168389 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 239.667-15 chr18 70282805 70283237 + 0.833333 NA Intergenic Intergenic -6024 NM_004232 9306 Hs.44439 NM_004232 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 180.833-41 chr8 64191528 64191906 + 0.833333 NA intron (NR_125826, intron 1 of 4) L1MA9|LINE|L1 176841 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 132-30 chr15 59041421 59041702 + 0.833333 NA intron (NM_001270529, intron 2 of 13) AluSg|SINE|Alu 53415 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 120-15 chr10 86374680 86374955 + 0.833333 NA Intergenic Intergenic -8022 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 197.333-25 chr18 5210794 5211302 + 0.833333 NA Intergenic L2c|LINE|L2 -13296 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 142.667-69 chr3 52300447 52300674 + 0.833333 NA Intergenic Intergenic -6252 NR_029677 406925 NR_029677 ENSG00000207926 MIR135A1 MIRN135-1|MIRN135A1|mir-135a-1 microRNA 135a-1 ncRNA 162.833-4 chr1 114407867 114408160 + 0.833333 NA intron (NM_015906, intron 13 of 19) L1MC5|LINE|L1 103190 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 224.333-7 chr13 71158734 71159291 + 0.833333 NA intron (NR_047699, intron 2 of 3) intron (NR_047699, intron 2 of 3) 143871 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 248.167-21 chr5 146637984 146638401 + 0.833333 NA intron (NM_181678, intron 8 of 10) intron (NM_181678, intron 8 of 10) -122079 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 133.333-33 chr13 111005198 111005382 + 0.833333 NA Intergenic LTR37-int|LTR|ERV1 39263 NR_126378 104355135 Hs.649708 NR_126378 LINC00431 - long intergenic non-protein coding RNA 431 ncRNA 116.333-27 chr12 3810132 3810293 + 0.833333 NA non-coding (NR_104461, exon 9 of 9) non-coding (NR_104461, exon 9 of 9) -57103 NM_001144958 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 228.667-29 chr3 36744298 36744895 + 0.833333 NA Intergenic Intergenic -4735 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 193.333-43 chr5 17859477 17859784 + 0.833333 NA intron (NR_134286, intron 4 of 7) MLT1A0|LTR|ERVL-MaLR 52356 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 206.333-8 chr14 48992348 48992769 + 0.833333 NA Intergenic Intergenic 593822 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 162.667-55 chr4 76038053 76038483 + 0.833333 NA intron (NM_001130017, intron 1 of 9) Tigger7|DNA|TcMar-Tigger -2198 NM_001302123 6373 Hs.632592 NM_005409 ENSG00000169248 CXCL11 H174|I-TAC|IP-9|IP9|SCYB11|SCYB9B|b-R1 C-X-C motif chemokine ligand 11 protein-coding 316.5-5 chr8 121327931 121328575 + 0.833333 NA Intergenic MIR|SINE|MIR -311093 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 131.333-7 chr10 27084393 27084557 + 0.833333 NA intron (NM_014915, intron 5 of 33) intron (NM_014915, intron 5 of 33) 16023 NM_001256053 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 188.667-61 chr7 53860247 53860704 + 0.833333 NA Intergenic L1MD1|LINE|L1 -48544 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 119.5-61 chr3 21738502 21738711 + 0.833333 NA intron (NM_024697, intron 1 of 7) intron (NM_024697, intron 1 of 7) 12604 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 227.167-34 chr9 102351493 102352044 + 0.833333 NA Intergenic Intergenic -167869 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 262.333-22 chr4 99180643 99181330 + 0.833333 NA intron (NR_037884, intron 3 of 9) L1PB3|LINE|L1 -19339 NR_028270 359806 Hs.537400 NR_028270 PCNAP1 p1PCNA proliferating cell nuclear antigen pseudogene 1 pseudo 194-50 chr6 88404166 88404504 + 0.833333 NA Intergenic Intergenic 135034 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 180.5-11 chr10 92908288 92908564 + 0.833333 NA intron (NM_001319195, intron 5 of 21) intron (NM_001319195, intron 5 of 21) 59906 NM_019053 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 202.5-18 chr22 27999893 28000566 + 0.833333 NA non-coding (NR_026963, exon 5 of 5) non-coding (NR_026963, exon 5 of 5) -79617 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 116.333-74 chr4 158562708 158562866 + 0.833333 NA intron (NM_001363776, intron 2 of 18) intron (NM_001363776, intron 2 of 18) 40905 NM_001253729 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 155.333-40 chr18 43893546 43893869 + 0.833333 NA Intergenic Intergenic -616217 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 147.167-60 chr8 79889773 79890090 + 0.833333 NA Intergenic Intergenic -18194 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 158.5-84 chr8 82996051 82996289 + 0.833333 NA Intergenic Intergenic 84066 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 186.333-37 chr21 14839577 14839881 + 0.833333 NA intron (NR_146322, intron 2 of 3) intron (NR_146322, intron 2 of 3) 78939 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 154-10 chr10 52179199 52179693 + 0.833333 NA intron (NM_001098512, intron 9 of 17) L1MA5A|LINE|L1 134682 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 171-29 chr20 24110993 24111218 + 0.833333 NA Intergenic L1M5|LINE|L1 -88662 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 249.667-32 chr4 60133386 60133984 + 0.833333 NA Intergenic Intergenic -788934 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 235.5-26 chr22 29768345 29768774 + 0.833333 NA intron (NM_001003684, intron 1 of 1) intron (NM_001003684, intron 1 of 1) 1190 NM_001003684 29796 Hs.284292 NM_013387 ENSG00000184076 UQCR10 HSPC051|HSPC119|HSPC151|QCR9|UCCR7.2|UCRC ubiquinol-cytochrome c reductase, complex III subunit X protein-coding 236.667-12 chr16 13637959 13638269 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR -282043 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 122.333-40 chr15 76244638 76245029 + 0.833333 NA intron (NM_000126, intron 9 of 11) intron (NM_000126, intron 9 of 11) 15319 NR_028510 7302 Hs.684881 NR_002721 TYRO3P - TYRO3P protein tyrosine kinase pseudogene pseudo 124.667-12 chr10 34315737 34316001 + 0.833333 NA intron (NM_001184794, intron 19 of 19) intron (NM_001184794, intron 19 of 19) 499427 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 268.833-4 chr11 32430666 32431242 + 0.833333 NA promoter-TSS (NM_001198552) promoter-TSS (NM_001198552) -137 NM_001198551 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 147.667-69 chr8 80183176 80183420 + 0.833333 NA Intergenic Intergenic -11734 NR_105034 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 140.5-68 chr6 53390079 53390327 + 0.833333 NA Intergenic AluJb|SINE|Alu -41024 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 150.333-12 chr10 58138605 58139080 + 0.833333 NA Intergenic LTR8|LTR|ERV1 129052 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 217.833-17 chr3 116387015 116387340 + 0.833333 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) 27153 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 147.333-2 chr1 75949502 75949723 + 0.833333 NA Intergenic Intergenic -17208 NR_026546 127247 Hs.125423 NM_080868 ENSG00000154007 ASB17 Asb-17 ankyrin repeat and SOCS box containing 17 protein-coding 138.833-79 chr7 24908968 24909222 + 0.833333 NA intron (NM_015550, intron 1 of 22) L3|LINE|CR1 -16474 NR_104112 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 119-96 chr8 63312366 63312573 + 0.833333 NA Intergenic AluSx1|SINE|Alu 143466 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 149-43 chr2 165455167 165455522 + 0.833333 NA Intergenic Intergenic -14354 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 207.667-16 chr17 31161092 31161445 + 0.833333 NA intron (NM_001042492, intron 3 of 57) intron (NM_001042492, intron 3 of 57) 66291 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 254.5-19 chr7 101894586 101894999 + 0.833333 NA intron (NM_181552, intron 1 of 23) intron (NM_181552, intron 1 of 23) 77166 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 219.5-14 chr16 75013026 75013551 + 0.833333 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 14264 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 182.333-50 chr4 125098471 125098757 + 0.833333 NA Intergenic Intergenic -217798 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 153-32 chr21 27594422 27594673 + 0.833333 NA Intergenic L2a|LINE|L2 -127832 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 196.667 chr1 40057686 40057971 + 0.833333 NA intron (NM_001350484, intron 2 of 13) intron (NM_001350484, intron 2 of 13) 16977 NM_001350481 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 252.667-25 chr8 67877694 67878070 + 0.833333 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -74164 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 260.167-5 chr10 83106520 83107147 + 0.833333 NA Intergenic Intergenic 570256 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 185.833-34 chr8 106855080 106855453 + 0.833333 NA Intergenic Intergenic -85022 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 138.667-2 chr1 53459020 53459260 + 0.833333 NA promoter-TSS (NM_033067) promoter-TSS (NM_033067) -259 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 367.5-4 chrX 31585910 31586751 + 0.833333 NA intron (NM_000109, intron 55 of 78) intron (NM_000109, intron 55 of 78) -78032 NM_004014 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 225-8 chr11 73456218 73456754 + 0.833333 NA intron (NM_001286051, intron 2 of 5) intron (NM_001286051, intron 2 of 5) 79818 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 211.5-18 chr3 19871546 19871962 + 0.833333 NA Intergenic Intergenic 62463 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 237-5 chr10 64276152 64276461 + 0.833333 NA Intergenic Intergenic -549222 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 156-3 chr1 58296854 58297092 + 0.833333 NA Intergenic MIR|SINE|MIR -46426 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 267.167-10 chr15 36984012 36984499 + 0.833333 NA intron (NM_172316, intron 8 of 12) L1MA9|LINE|L1 -11354 NR_107030 102466875 NR_107030 ENSG00000277202 MIR8063 hsa-mir-8063 microRNA 8063 ncRNA 176-32 chr4 137962560 137962911 + 0.833333 NA Intergenic Intergenic -126279 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 184.667-15 chr12 114100894 114101701 + 0.833333 NA Intergenic L1PA7|LINE|L1 -134972 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 272.167-16 chr16 64756180 64756554 + 0.833333 NA Intergenic Intergenic 365696 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 191.167-21 chr5 72264084 72264466 + 0.833333 NA intron (NM_001286748, intron 4 of 11) L1MB5|LINE|L1 55965 NM_001286751 23107 Hs.482491 NM_015084 ENSG00000113048 MRPS27 MRP-S27|S27mt mitochondrial ribosomal protein S27 protein-coding 148.833-69 chrX 151991438 151991712 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -16899 NM_004961 2564 Hs.22785 NM_004961 ENSG00000102287 GABRE - gamma-aminobutyric acid type A receptor epsilon subunit protein-coding 203.667-11 chr14 21994675 21994934 + 0.833333 NA Intergenic Intergenic -323787 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 121-27 chr15 83595650 83595952 + 0.833333 NA intron (NM_001324185, intron 9 of 9) L1MC|LINE|L1 -58322 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 128.5-43 chr2 164773212 164773634 + 0.833333 NA intron (NM_001365670, intron 2 of 13) intron (NM_001365670, intron 2 of 13) -67326 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 163.167-42 chr7 11274249 11274740 + 0.833333 NA Intergenic Intergenic 300622 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 235-27 chr5 152406226 152406661 + 0.833333 NA Intergenic L2a|LINE|L2 -1164 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 132.667-25 chr12 115328088 115328403 + 0.833333 NA Intergenic L1M3|LINE|L1 -644070 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 119.5-24 chr12 28584563 28584807 + 0.833333 NA Intergenic Intergenic -393947 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 149.167-55 chr6 131818858 131819100 + 0.833333 NA intron (NM_006208, intron 1 of 24) Charlie1a|DNA|hAT-Charlie 10959 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 248.667-11 chr14 51034870 51035392 + 0.833333 NA intron (NM_015163, intron 1 of 9) L1ME4a|LINE|L1 60573 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 199.167-35 chr5 122822481 122822919 + 0.833333 NA intron (NM_003100, intron 11 of 14) intron (NM_003100, intron 11 of 14) -22749 NR_146145 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 156.833-23 chr18 2784761 2785081 + 0.833333 NA intron (NM_015295, intron 45 of 47) FLAM_C|SINE|Alu -62085 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 118.5-75 chr4 92720573 92720747 + 0.833333 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 416261 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 122-75 chr6 47701313 47701579 + 0.833333 NA intron (NM_153838, intron 1 of 9) intron (NM_153838, intron 1 of 9) 2866 NM_153838 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 203.833-13 chr2 81538038 81538286 + 0.833333 NA Intergenic Intergenic -71216 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 176.667-69 chr6 168747485 168747861 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR 216709 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 145.5-27 chr17 41466181 41466422 + 0.833333 NA intron (NM_002278, intron 1 of 6) intron (NM_002278, intron 1 of 6) 1085 NM_002278 3882 Hs.41752 NM_002278 ENSG00000108759 KRT32 HA2|HKA2|KRTHA2|hHa2 keratin 32 protein-coding 164.167-14 chr12 57640238 57640478 + 0.833333 NA Intergenic Intergenic -7119 NM_001276469 2583 Hs.159481 NM_001478 ENSG00000135454 B4GALNT1 GALGT|GALNACT|GalNAc-T|SPG26 beta-1,4-N-acetyl-galactosaminyltransferase 1 protein-coding 132.333-38 chr14 60885553 60885838 + 0.833333 NA intron (NM_001177963, intron 6 of 6) L1M4c|LINE|L1 95384 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 131.167-49 chr3 34787471 34787772 + 0.833333 NA Intergenic L1MC4|LINE|L1 606402 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 170.5 chr1 34749747 34750039 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR -5154 NM_005268 2709 Hs.198249 NM_005268 ENSG00000189280 GJB5 CX31.1 gap junction protein beta 5 protein-coding 259.667-5 chr12 9371182 9371558 + 0.833333 NA TTS (NR_120481) TTS (NR_120481) 3906 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 165.333-47 chr5 96635108 96635403 + 0.833333 NA Intergenic Intergenic -26782 NM_001042442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 115.5-64 chr3 64006933 64007209 + 0.833333 NA intron (NR_038286, intron 1 of 2) intron (NR_038286, intron 1 of 2) 3049 NR_038286 100507062 Hs.152536 NR_038286 ENSG00000239653 PSMD6-AS2 - PSMD6 antisense RNA 2 ncRNA 303.167-3 chr11 108060649 108061519 + 0.833333 NA intron (NM_003478, intron 7 of 18) intron (NM_003478, intron 7 of 18) 52186 NM_003478 8065 Hs.440320 NM_003478 ENSG00000166266 CUL5 CUL-5|VACM-1|VACM1 cullin 5 protein-coding 181-58 chr7 31404902 31405438 + 0.833333 NA Intergenic L1M6|LINE|L1 -64444 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 215.333-41 chr5 92246203 92246505 + 0.833333 NA Intergenic Intergenic -863037 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 222.667 chr1 31243714 31244063 + 0.833333 NA Intergenic Intergenic -4001 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C sodium/potassium transporting ATPase interacting 1 protein-coding 128.833-35 chr17 61234858 61235028 + 0.833333 NA intron (NM_001330413, intron 23 of 25) AluSx|SINE|Alu 132761 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 191-4 chr10 42370640 42371017 + 0.833333 NA Intergenic MER57A-int|LTR|ERV1 -2783 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 142.333-29 chr13 106150964 106151198 + 0.833333 NA Intergenic L2a|LINE|L2 -225483 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 216.167-15 chr20 28495120 28495673 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 107269 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 217.833-16 chr3 69960607 69960890 + 0.833333 NA intron (NM_198178, intron 8 of 8) intron (NM_198178, intron 8 of 8) 24148 NM_000248 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 131-62 chr6 69612849 69613032 + 0.833333 NA Intergenic L1MC5a|LINE|L1 183526 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 181.333-29 chr2 68878043 68878538 + 0.833333 NA Intergenic Intergenic -6893 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 140.167-74 chr9 28240033 28240281 + 0.833333 NA intron (NM_152570, intron 5 of 6) L1M1|LINE|L1 479148 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 122.667-63 chr3 52103637 52103798 + 0.833333 NA intron (NM_015426, intron 9 of 10) L1MCc|LINE|L1 -38605 NR_027331 100128378 Hs.640106 NM_001123039 LINC00696 C3orf74 long intergenic non-protein coding RNA 696 ncRNA 220.167-14 chr17 74294884 74295376 + 0.833333 NA intron (NM_023036, intron 6 of 13) AluSx|SINE|Alu 20896 NM_023036 64446 Hs.147472 NM_023036 ENSG00000171595 DNAI2 CILD9|DIC2 dynein axonemal intermediate chain 2 protein-coding 300.5-14 chr8 78609114 78609678 + 0.833333 NA Intergenic Intergenic -50893 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 329.5-4 chr12 10623139 10623708 + 0.833333 NA intron (NM_018423, intron 8 of 10) Tigger13a|DNA|TcMar-Tigger -9814 NR_135121 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 113.333-81 chr4 76248526 76248837 + 0.833333 NA intron (NM_001242936, intron 2 of 7) intron (NM_001242936, intron 2 of 7) -3019 NM_001242939 100631383 Hs.720509 NM_001242939 ENSG00000272414 FAM47E-STBD1 FAM47E FAM47E-STBD1 readthrough protein-coding 125-22 chr11 104692885 104693165 + 0.833333 NA Intergenic Intergenic -83723 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 211.667-43 chr8 84913838 84914151 + 0.833333 NA intron (NM_001287244, intron 7 of 7) intron (NM_001287244, intron 7 of 7) -193244 NM_001349637 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 137.333-69 chr4 73001263 73001480 + 0.833333 NA Intergenic Intergenic 68345 NM_001297732 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 132.667-69 chr4 35064114 35064397 + 0.833333 NA Intergenic Intergenic -794508 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 196.833-5 chr1 173918743 173919145 + 0.833333 NA Intergenic L2a|LINE|L2 -1566 NM_000488 462 Hs.75599 NM_000488 ENSG00000117601 SERPINC1 AT3|AT3D|ATIII|ATIII-R2|ATIII-T1|ATIII-T2|THPH7 serpin family C member 1 protein-coding 119.667-44 chr2 85121989 85122254 + 0.833333 NA Intergenic AluSz|SINE|Alu -11271 NM_031283 83439 Hs.516297 NM_031283 ENSG00000152284 TCF7L1 TCF-3|TCF3 transcription factor 7 like 1 protein-coding 187.5-44 chr5 131503077 131503390 + 0.833333 NA intron (NM_016340, intron 11 of 27) L1MC4|LINE|L1 131996 NM_001164386 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 232.333-12 chr2 31326870 31327161 + 0.833333 NA Intergenic Intergenic 87727 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 145.333-5 chr1 105412510 105412995 + 0.833333 NA Intergenic L2|LINE|L2 206183 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 207.167-33 chr9 1696333 1696617 + 0.833333 NA Intergenic L1MB2|LINE|L1 -318872 NM_001289397 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 266.333-13 chr5 106691615 106692217 + 0.833333 NA Intergenic Intergenic 319098 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 119.333-12 chr10 68974488 68974689 + 0.833333 NA intron (NM_001256910, intron 10 of 14) intron (NM_001256910, intron 10 of 14) -14215 NM_015634 26128 Hs.279580 NM_015634 ENSG00000198954 KIF1BP KBP|KIAA1279|TTC20 KIF1 binding protein protein-coding 119.5-27 chr12 66104055 66104299 + 0.833333 NA Intergenic Intergenic 26573 NM_032338 84298 Hs.504820 NM_032338 ENSG00000139233 LLPH C12orf31|hLLP LLP homolog, long-term synaptic facilitation factor protein-coding 137.667-65 chr3 21341246 21341463 + 0.833333 NA Intergenic Intergenic -64372 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 247.667-24 chr8 78816263 78816652 + 0.833333 NA Intergenic L1MA8|LINE|L1 -10934 NM_001199886 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 152.667-46 chr2 111013727 111014150 + 0.833333 NA intron (NM_001371254, intron 15 of 18) L1ME2|LINE|L1 101650 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 257.5-12 chr3 187542855 187543356 + 0.833333 NA Intergenic L1MA4|LINE|L1 96059 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 147.5 chr1 50726517 50726859 + 0.833333 NA intron (NM_007051, intron 6 of 18) AluY|SINE|Alu 233579 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 207.833-34 chr7 79325792 79326244 + 0.833333 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -126939 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 174.833-5 chr10 93905560 93905947 + 0.833333 NA intron (NR_144336, intron 1 of 2) intron (NR_144336, intron 1 of 2) 11775 NR_144336 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 115.833-58 chr5 61326032 61326317 + 0.833333 NA Intergenic Intergenic -6084 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 224.167-23 chr6 1823555 1824011 + 0.833333 NA intron (NM_001253846, intron 7 of 10) intron (NM_001253846, intron 7 of 10) 213868 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 118.167-22 chr15 95288195 95288349 + 0.833333 NA intron (NR_034095, intron 3 of 3) intron (NR_034095, intron 3 of 3) 38828 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 200-47 chr3 94951040 94951373 + 0.833333 NA intron (NR_015400, intron 1 of 7) intron (NR_015400, intron 1 of 7) 12943 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 150.5-68 chr6 38163768 38164107 + 0.833333 NA Intergenic Intergenic -317659 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 168.667-7 chr11 76613164 76613645 + 0.833333 NA Intergenic Charlie7|DNA|hAT-Charlie 56534 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 192.333-8 chr14 81393821 81394066 + 0.833333 NA intron (NM_001366850, intron 4 of 7) AluSx1|SINE|Alu 33832 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 187.167-47 chr8 133079496 133079811 + 0.833333 NA intron (NM_001045556, intron 1 of 8) intron (NM_001045556, intron 1 of 8) -19299 NM_006748 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 167.667-46 chr2 144925407 144925784 + 0.833333 NA intron (NR_033870, intron 3 of 4) L1MEj|LINE|L1 257628 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 195.833-5 chr11 76104199 76104525 + 0.833333 NA intron (NM_003369, intron 13 of 14) intron (NM_003369, intron 13 of 14) 102140 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 139.5-4 chr1 184294432 184294676 + 0.833333 NA Intergenic Intergenic -92475 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 134.667-92 chr6 42827435 42827737 + 0.833333 NA intron (NM_001318819, intron 6 of 13) intron (NM_001318819, intron 6 of 13) 6530 NM_015349 23506 Hs.658033 NM_015349 ENSG00000112624 BICRAL GLTSCR1L|KIAA0240 BRD4 interacting chromatin remodeling complex associated protein like protein-coding 146.167-13 chr13 82815123 82815448 + 0.833333 NA Intergenic Intergenic 1067108 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 221.667-18 chr20 10935794 10936205 + 0.833333 NA Intergenic Intergenic -26727 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 200.5-15 chr15 90451182 90451458 + 0.833333 NA intron (NM_003870, intron 11 of 37) MSTB2|LTR|ERVL-MaLR 63078 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 196.667-10 chr11 84298048 84298468 + 0.833333 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) 19081 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 138.833-48 chr20 47855064 47855272 + 0.833333 NA Intergenic LTR55|LTR|ERVL? -68552 NM_001161841 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 206-41 chrX 81754806 81755294 + 0.833333 NA Intergenic L1PA11|LINE|L1 552948 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 188.5-8 chr10 44971239 44971584 + 0.833333 NA intron (NM_032023, intron 2 of 10) intron (NM_032023, intron 2 of 10) 7398 NM_007021 11067 Hs.93675 NM_007021 ENSG00000165507 DEPP1 C10orf10|DEPP|FIG|Fseg DEPP1 autophagy regulator protein-coding 114.333-118 chr8 76248419 76248667 + 0.833333 NA Intergenic L1MEg|LINE|L1 -158111 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 199.833-5 chr11 5242106 5242474 + 0.833333 NA intron (NR_001589, intron 2 of 2) intron (NR_001589, intron 2 of 2) 1302 NR_001589 3044 Hs.20205 NR_001589 HBBP1 HBH1|HBHP hemoglobin subunit beta pseudogene 1 pseudo 138.667-59 chr3 163579495 163579793 + 0.833333 NA Intergenic L1MCc|LINE|L1 -276343 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 209.833-20 chr4 90618986 90619479 + 0.833333 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 384201 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 297.667-2 chr2 78850469 78851054 + 0.833333 NA Intergenic L1MEd|LINE|L1 -174941 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 257.167 chr16 25406403 25406871 + 0.833333 NA Intergenic Intergenic -148792 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 129-70 chr5 46294660 46294917 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -598408 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 223.833-6 chr1 181548041 181548436 + 0.833333 NA intron (NM_001205293, intron 3 of 47) AluSz|SINE|Alu 64721 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 340.167-7 chr3 160044164 160044616 + 0.833333 NA intron (NR_108088, intron 3 of 9) Tigger3b|DNA|TcMar-Tigger 23741 NR_104132 730109 Hs.99333 NR_104132 LINC01100 - long intergenic non-protein coding RNA 1100 ncRNA 136.167-12 chr10 100919865 100920082 + 0.833333 NA intron (NM_018121, intron 4 of 19) intron (NM_018121, intron 4 of 19) 7010 NM_001136123 55719 Hs.447458 NM_018121 ENSG00000119906 SLF2 C10orf6|FAM178A SMC5-SMC6 complex localization factor 2 protein-coding 189.5-25 chr19 29983357 29983863 + 0.833333 NA intron (NM_001252641, intron 2 of 10) intron (NM_001252641, intron 2 of 10) 41371 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 169.167-45 chr8 119644666 119644976 + 0.833333 NA intron (NM_001330600, intron 1 of 25) intron (NM_001330600, intron 1 of 25) -5982 NM_001130863 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 179.667-56 chr8 119733290 119733663 + 0.833333 NA intron (NM_003184, intron 25 of 25) MIR3|SINE|MIR -60086 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 194.333-36 chr7 26234084 26234375 + 0.833333 NA Intergenic Intergenic 32484 NM_016587 11335 Hs.381189 NM_007276 ENSG00000122565 CBX3 HECH|HP1-GAMMA|HP1Hs-gamma chromobox 3 protein-coding 194.667-29 chr2 104242256 104242544 + 0.833333 NA Intergenic L1MA5|LINE|L1 165932 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 199-32 chr6 166761700 166762285 + 0.833333 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) 100533 NM_001318936 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 129.5-53 chr20 5719897 5720091 + 0.833333 NA Intergenic Intergenic -30393 NM_001303478 149840 Hs.529340 NM_152504 ENSG00000171984 SHLD1 C20orf196|RINN3 shieldin complex subunit 1 protein-coding 218.833-5 chr11 23506344 23506787 + 0.833333 NA Intergenic Intergenic -87375 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 218-7 chr10 111606182 111606552 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR 492076 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 150.167-41 chr3 54145254 54145476 + 0.833333 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 22813 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 124.833-19 chr13 85984505 85984666 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -185166 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 181.333-4 chr10 6618502 6618817 + 0.833333 NA promoter-TSS (NR_120634) promoter-TSS (NR_120634) -57 NR_120634 101928150 Hs.576825 NR_120634 LINC02648 - long intergenic non-protein coding RNA 2648 ncRNA 179.167-43 chr7 9329408 9329704 + 0.833333 NA Intergenic Intergenic -304714 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 207.667-29 chr3 7282954 7283289 + 0.833333 NA intron (NM_000844, intron 2 of 9) MIRb|SINE|MIR 252163 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 218.167-10 chr16 60539773 60540329 + 0.833333 NA Intergenic Intergenic -180258 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 121.5-31 chr13 46298729 46298948 + 0.833333 NA promoter-TSS (NR_047493) promoter-TSS (NR_047493) -994 NR_047493 100861554 Hs.90866 NR_047493 ENSG00000261097 LINC00563 - long intergenic non-protein coding RNA 563 ncRNA 266.333-3 chr12 127637410 127638107 + 0.833333 NA Intergenic Intergenic -1291 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 275.667-2 chr1 196683823 196684258 + 0.833333 NA intron (NM_001014975, intron 6 of 9) intron (NM_001014975, intron 6 of 9) 32162 NM_000186 3075 Hs.363396 NM_000186 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 156.167-35 chr2 200611083 200611421 + 0.833333 NA intron (NM_001159, intron 12 of 34) intron (NM_001159, intron 12 of 34) 25238 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 154-66 chr6 52667499 52667735 + 0.833333 NA non-coding (NR_024403, exon 2 of 2) non-coding (NR_024403, exon 2 of 2) 3216 NR_024403 730101 Hs.7921 NR_024403 ENSG00000216775 LOC730101 - uncharacterized LOC730101 ncRNA 166.5-54 chr6 163175081 163175380 + 0.833333 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) 16772 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 274.5-7 chr2 70990950 70991375 + 0.833333 NA intron (NM_144582, intron 3 of 5) intron (NM_144582, intron 3 of 5) 3711 NM_144582 113419 Hs.516087 NM_144582 ENSG00000144043 TEX261 TEG-261 testis expressed 261 protein-coding 141-36 chr18 65832983 65833281 + 0.833333 NA intron (NM_001362438, intron 6 of 11) intron (NM_001362438, intron 6 of 11) 82120 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 168.5-53 chr5 97821455 97822024 + 0.833333 NA Intergenic L1MA2|LINE|L1 -19019 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 257.833-6 chr22 34276750 34277441 + 0.833333 NA Intergenic MIRb|SINE|MIR -354207 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 169.667-62 chr6 35354603 35354826 + 0.833333 NA intron (NM_001171819, intron 2 of 6) MER47A|DNA|TcMar-Tigger 12156 NM_001171820 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 195.333-7 chr11 63277246 63277493 + 0.833333 NA Intergenic L1PA15-16|LINE|L1 -12534 NR_134874 387775 Hs.188982 NM_001039752 ENSG00000184999 SLC22A10 OAT5|hOAT5 solute carrier family 22 member 10 protein-coding 318.667-5 chr6 51631742 51632443 + 0.833333 NA intron (NM_138694, intron 65 of 66) AluSq2|SINE|Alu 10222 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 189.667 chr1 206036960 206037228 + 0.833333 NA Intergenic Intergenic -13199 NM_148964 1510 Hs.644082 NM_001910 ENSG00000196188 CTSE CATE cathepsin E protein-coding 177.333-54 chr5 164218976 164219206 + 0.833333 NA Intergenic L1ME1|LINE|L1 248311 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 211.5-9 chr13 42607734 42608201 + 0.833333 NA TTS (NM_033012) TTS (NM_033012) 33815 NM_003701 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf TNF superfamily member 11 protein-coding 124.333-14 chr11 63557811 63558033 + 0.833333 NA intron (NM_017878, intron 3 of 3) L2c|LINE|L2 5457 NM_017878 54979 Hs.272805 NM_017878 ENSG00000133328 PLAAT2 HRASLS2|PLA1/2-2|PLAAT-2 phospholipase A and acyltransferase 2 protein-coding 196.167-5 chr10 29904267 29904571 + 0.833333 NA Intergenic MER103C|DNA|hAT-Charlie 155167 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 116.667-67 chr22 26909895 26910080 + 0.833333 NA intron (NR_110540, intron 2 of 2) AluSc|SINE|Alu 6695 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 204.833-4 chr1 87040162 87040426 + 0.833333 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) -89471 NR_026989 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 158-50 chr7 55630263 55630671 + 0.833333 NA Intergenic MER4A1|LTR|ERV1 57565 NR_027340 360132 Hs.446691 NM_182827 ENSG00000176826 FKBP9P1 FKBP9L FKBP prolyl isomerase 9 pseudogene 1 pseudo 228.333-25 chr5 10234731 10235115 + 0.833333 NA intron (NR_047668, intron 3 of 3) intron (NR_047668, intron 3 of 3) 14965 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 116.5-47 chr22 38183522 38183790 + 0.833333 NA Intergenic Intergenic -1826 NM_001349869 8398 Hs.170479 NM_003560 ENSG00000184381 PLA2G6 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta phospholipase A2 group VI protein-coding 122.5-81 chr6 67510283 67510749 + 0.833333 NA Intergenic Intergenic -544835 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 131.5-36 chr2 117875564 117875752 + 0.833333 NA Intergenic L1PA4|LINE|L1 41927 NR_158150 107985939 NR_158150 LOC107985939 - uncharacterized LOC107985939 ncRNA 165.167-32 chr3 101465401 101465884 + 0.833333 NA intron (NM_020654, intron 3 of 23) L1MA4A|LINE|L1 47570 NM_001077203 57337 Hs.529551 NM_020654 ENSG00000138468 SENP7 - SUMO specific peptidase 7 protein-coding 133.833-41 chr2 151804276 151804627 + 0.833333 NA intron (NM_001037174, intron 5 of 5) intron (NM_001037174, intron 5 of 5) 23970 NM_001037174 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 117-109 chr7 34485675 34485876 + 0.833333 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -172443 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 135.5-80 chr8 124077131 124077406 + 0.833333 NA intron (NM_001039112, intron 32 of 40) MIRb|SINE|MIR -36486 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 205.667-33 chr2 99555895 99556323 + 0.833333 NA intron (NM_001025108, intron 21 of 23) intron (NM_001025108, intron 21 of 23) -66092 NM_001321454 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 189-22 chr21 28185856 28186125 + 0.833333 NA intron (NR_126012, intron 3 of 5) intron (NR_126012, intron 3 of 5) 42677 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 191.5-11 chr11 87882645 87882883 + 0.833333 NA Intergenic Intergenic -163353 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 350.333-6 chr5 117161840 117162313 + 0.833333 NA Intergenic Intergenic -253436 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 179.167-30 chr3 58753300 58753660 + 0.833333 NA TTS (NM_001351532) TTS (NM_001351532) -70991 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 157.667-77 chrX 73277356 73277785 + 0.833333 NA Intergenic Intergenic -62719 NM_021963 4674 Hs.66180 NM_021963 ENSG00000186462 NAP1L2 BPX nucleosome assembly protein 1 like 2 protein-coding 117.5-66 chr6 155783977 155784218 + 0.833333 NA Intergenic Intergenic -162700 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 126.667-114 chr9 76844044 76844309 + 0.833333 NA intron (NM_001308048, intron 4 of 17) MSTB|LTR|ERVL-MaLR 61911 NM_001308048 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 180.333-5 chr1 214158207 214158511 + 0.833333 NA Intergenic HAL1|LINE|L1 -122800 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 201.667-4 chr1 115059636 115060126 + 0.833333 NA intron (NM_001308315, intron 3 of 6) intron (NM_001308315, intron 3 of 6) 25935 NM_001277991 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 147.5-19 chr11 112065199 112065503 + 0.833333 NA intron (NM_001082619, intron 5 of 5) intron (NM_001082619, intron 5 of 5) 8820 NM_001082619 120379 Hs.420662 NM_138789 ENSG00000150773 PIH1D2 - PIH1 domain containing 2 protein-coding 170.167-47 chr6 132368215 132368476 + 0.833333 NA intron (NM_015529, intron 4 of 11) intron (NM_015529, intron 4 of 11) 33130 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 200.5-44 chr8 115128782 115129171 + 0.833333 NA Intergenic MIR1_Amn|SINE|MIR 539037 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 172.333-66 chr6 37691452 37691845 + 0.833333 NA intron (NM_153487, intron 1 of 16) intron (NM_153487, intron 1 of 16) 6235 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 174.667-26 chr16 24176555 24176862 + 0.833333 NA intron (NM_002738, intron 12 of 16) AluSq2|SINE|Alu -26408 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 120.167-70 chr6 74676588 74676844 + 0.833333 NA intron (NR_110856, intron 3 of 3) MER20|DNA|hAT-Charlie 452066 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 133.667-28 chr14 72388603 72388847 + 0.833333 NA intron (NM_001370288, intron 3 of 16) MIR|SINE|MIR -128095 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 154.167-68 chrX 41046683 41046903 + 0.833333 NA Intergenic L1MDa|LINE|L1 -38652 NM_001039590 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 178.167-38 chr5 44831146 44831462 + 0.833333 NA Intergenic Intergenic 22357 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 178-39 chr4 38681498 38682021 + 0.833333 NA intron (NM_016531, intron 2 of 5) intron (NM_016531, intron 2 of 5) -17131 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 300.833-5 chr2 138601494 138602106 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR 100030 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 178.833-34 chr8 26478979 26479230 + 0.833333 NA Intergenic HAL1|LINE|L1 34768 NM_007257 10687 Hs.591838 NM_007257 ENSG00000240694 PNMA2 MA2|MM2|RGAG2 PNMA family member 2 protein-coding 239.167-3 chr1 114526477 114527211 + 0.833333 NA Intergenic AluSx|SINE|Alu -15641 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 156.5-80 chr7 97545105 97545296 + 0.833333 NA Intergenic L1MD1|LINE|L1 -186886 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 137.167-34 chr2 101058580 101058833 + 0.833333 NA intron (NM_001102426, intron 3 of 19) intron (NM_001102426, intron 3 of 19) 56417 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 151.833-36 chr21 20125209 20125467 + 0.833333 NA Intergenic Intergenic 133347 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 138.667-36 chr15 100596207 100596483 + 0.833333 NA intron (NR_148018, intron 1 of 6) MER5A|DNA|hAT-Charlie 5839 NM_001040616 55180 Hs.105633 NM_018148 ENSG00000140471 LINS1 LINS|MRT27|WINS1 lines homolog 1 protein-coding 201.167-3 chr10 30210678 30211055 + 0.833333 NA promoter-TSS (NR_120653) promoter-TSS (NR_120653) -986 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 126.5-18 chr13 33151602 33152084 + 0.833333 NA intron (NM_178007, intron 3 of 13) intron (NM_178007, intron 3 of 13) 34248 NM_178007 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 205.167-42 chr8 144563206 144563557 + 0.833333 NA intron (NM_025251, intron 2 of 10) Cheshire|DNA|hAT-Charlie -34270 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 179-44 chr5 98893371 98893618 + 0.833333 NA exon (NM_001270, exon 13 of 35) exon (NM_001270, exon 13 of 35) 33040 NM_001270 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 296.5-7 chr22 28630337 28630774 + 0.833333 NA intron (NM_001145418, intron 1 of 22) AluJb|SINE|Alu 49310 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 137.667-29 chr14 67716958 67717207 + 0.833333 NA intron (NM_152443, intron 1 of 8) L1ME2z|LINE|L1 15196 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 272.167-24 chr8 108015165 108015692 + 0.833333 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 66511 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 250.167-13 chr4 55604742 55605421 + 0.833333 NA intron (NM_001292046, intron 6 of 8) intron (NM_001292046, intron 6 of 8) -12836 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 146.5-25 chr13 103757575 103757862 + 0.833333 NA Intergenic Tigger2|DNA|TcMar-Tigger 332518 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 172-30 chr17 39258006 39258299 + 0.833333 NA 3' UTR (NM_032875, exon 15 of 15) 3' UTR (NM_032875, exon 15 of 15) -32207 NM_001351360 342667 Hs.145068 NM_198993 ENSG00000141750 STAC2 24b2|24b2/STAC2 SH3 and cysteine rich domain 2 protein-coding 121-69 chr5 87609424 87609797 + 0.833333 NA Intergenic Intergenic -52432 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 147.833-53 chr5 11994334 11994558 + 0.833333 NA Intergenic L1P4|LINE|L1 -90000 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 136.167-68 chr6 55623247 55623543 + 0.833333 NA Intergenic L1MA3|LINE|L1 -44181 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 297-2 chr10 69547223 69547742 + 0.833333 NA Intergenic Intergenic 25940 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 149-39 chr2 81716769 81717010 + 0.833333 NA Intergenic Intergenic -249943 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 207-55 chr9 72890255 72890665 + 0.833333 NA Intergenic MIR|SINE|MIR -16351 NR_121180 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 276.5-2 chr12 11875226 11875745 + 0.833333 NA intron (NM_001987, intron 5 of 7) intron (NM_001987, intron 5 of 7) -174376 NM_001370268 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 194.5-7 chr14 51348051 51348359 + 0.833333 NA intron (NR_038358, intron 1 of 4) intron (NR_038358, intron 1 of 4) 14812 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 192-28 chr3 29063800 29064233 + 0.833333 NA Intergenic Intergenic 216923 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 115.167-56 chr2 67965341 67965516 + 0.833333 NA Intergenic Intergenic 97576 NM_001190265 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 268.667-4 chr14 75425496 75425836 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR -2058 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 134.5-49 chr2 184033077 184033461 + 0.833333 NA Intergenic L1ME4b|LINE|L1 -345706 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 218.667-29 chr5 109990005 109990478 + 0.833333 NA Intergenic Intergenic 107059 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 118.833-45 chr20 17142534 17142756 + 0.833333 NA Intergenic Intergenic -83462 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 172.833-18 chr15 56095073 56095457 + 0.833333 NA exon (NM_022841, exon 10 of 10) exon (NM_022841, exon 10 of 10) 94667 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 236.5-32 chr8 121978418 121978890 + 0.833333 NA Intergenic Intergenic -337214 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 200.167-8 chr10 88151410 88151684 + 0.833333 NA Intergenic MIR|SINE|MIR 287922 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 180.667-7 chr10 52534023 52534582 + 0.833333 NA Intergenic Intergenic -63769 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 158.5-33 chr2 4607304 4607578 + 0.833333 NA Intergenic Intergenic 48781 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 134.667-22 chr12 54757026 54757286 + 0.833333 NA Intergenic L1MA4|LINE|L1 -97360 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 114.833-50 chr4 82451128 82451331 + 0.833333 NA exon (NM_001292017, exon 3 of 6) exon (NM_001292017, exon 3 of 6) 20639 NR_120457 58478 Hs.18442 NM_021204 ENSG00000145293 ENOPH1 E1|MASA|MST145|mtnC enolase-phosphatase 1 protein-coding 177.833-8 chr15 56186796 56187162 + 0.833333 NA intron (NM_001370561, intron 4 of 11) intron (NM_001370561, intron 4 of 11) 2953 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 113.667-82 chr3 97914363 97914517 + 0.833333 NA intron (NM_153605, intron 16 of 21) L4_B_Mam|LINE|RTE-X 57991 NM_153182 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 239.667-18 chr2 117686859 117687342 + 0.833333 NA Intergenic Intergenic -127591 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 140.833-49 chr5 55635911 55636136 + 0.833333 NA intron (NM_001349385, intron 11 of 14) intron (NM_001349385, intron 11 of 14) 57030 NM_001258286 153129 Hs.742101 NM_173514 ENSG00000177058 SLC38A9 URLC11 solute carrier family 38 member 9 protein-coding 129.5-41 chr2 46180995 46181294 + 0.833333 NA intron (NM_005400, intron 14 of 14) intron (NM_005400, intron 14 of 14) -116263 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 168.667-64 chr5 101040678 101041078 + 0.833333 NA Intergenic L1MC5|LINE|L1 -137596 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 238.167-4 chr10 105946452 105946918 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR -126352 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 168-19 chr14 51146669 51147020 + 0.833333 NA Intergenic Intergenic -51140 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 291.667-18 chr3 97722017 97722660 + 0.833333 NA intron (NM_001080448, intron 15 of 17) MIR3|SINE|MIR -42183 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 182.5-2 chr1 184716708 184716946 + 0.833333 NA intron (NM_025191, intron 13 of 19) intron (NM_025191, intron 13 of 19) 38031 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 290.333-5 chr14 48635762 48636278 + 0.833333 NA Intergenic Intergenic -841006 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 168.167-48 chr6 54986230 54986561 + 0.833333 NA Intergenic L1PA14|LINE|L1 -120065 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 231.5-12 chr3 57977817 57978373 + 0.833333 NA Intergenic Intergenic -30327 NM_001164318 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 157.833-51 chr5 207257 207506 + 0.833333 NA intron (NM_145265, intron 2 of 2) L2c|LINE|L2 10772 NM_145265 133957 Hs.294145 NM_145265 ENSG00000164366 CCDC127 - coiled-coil domain containing 127 protein-coding 270.333-3 chr12 43843352 43843769 + 0.833333 NA intron (NM_001286213, intron 1 of 6) intron (NM_001286213, intron 1 of 6) 7479 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 169.833-34 chr7 87010141 87010490 + 0.833333 NA intron (NM_001142749, intron 1 of 21) intron (NM_001142749, intron 1 of 21) 29919 NM_001291991 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 122.333-99 chr6 142255047 142255218 + 0.833333 NA Intergenic AluJr|SINE|Alu -46787 NM_001032394 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 126.5-34 chr16 76283998 76284294 + 0.833333 NA intron (NR_136213, intron 1 of 23) intron (NR_136213, intron 1 of 23) 6745 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 272.5-2 chr1 192730227 192730575 + 0.833333 NA Intergenic Intergenic 14073 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 117.833-43 chr2 69943040 69943550 + 0.833333 NA TTS (NM_002357) TTS (NM_002357) 18970 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase retroviral like 1 protein-coding 146 chr1 28861127 28861501 + 0.833333 NA intron (NM_000911, intron 2 of 2) L3|LINE|CR1 -25777 NM_001166005 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 149.5-31 chr18 2547814 2548127 + 0.833333 NA intron (NM_022840, intron 5 of 8) intron (NM_022840, intron 5 of 8) 23535 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 176.667-11 chr10 35033069 35033342 + 0.833333 NA exon (NM_001198777, exon 11 of 21) exon (NM_001198777, exon 11 of 21) 41078 NM_001324376 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 135.333-20 chr13 22445503 22445818 + 0.833333 NA Intergenic L1ME3A|LINE|L1 235375 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 149.833-11 chr18 3586785 3587119 + 0.833333 NA intron (NM_001242761, intron 7 of 11) intron (NM_001242761, intron 7 of 11) -7162 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 190.667-21 chr18 75949322 75949787 + 0.833333 NA Intergenic L1M2|LINE|L1 -173444 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 201-22 chr2 145423915 145424232 + 0.833333 NA Intergenic L1MA9|LINE|L1 756106 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 204.167-14 chr2 30781799 30782100 + 0.833333 NA intron (NM_144575, intron 2 of 22) MLT2B4|LTR|ERVL 25497 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 204.333-29 chr2 192191914 192192447 + 0.833333 NA intron (NM_001305134, intron 1 of 9) intron (NM_001305134, intron 1 of 9) 2753 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 209.5-4 chr11 22153675 22154036 + 0.833333 NA Intergenic Intergenic -39230 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 156-29 chr14 61078332 61078715 + 0.833333 NA intron (NR_033344, intron 15 of 16) intron (NR_033344, intron 15 of 16) -96833 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 244-15 chr5 11778869 11779362 + 0.833333 NA intron (NM_001288717, intron 1 of 20) Tigger13a|DNA|TcMar-Tigger 125331 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 158.833-23 chr15 83737835 83738177 + 0.833333 NA intron (NM_207517, intron 3 of 29) L1MEi|LINE|L1 83883 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 227-14 chr2 135246538 135247064 + 0.833333 NA intron (NM_001286569, intron 13 of 21) intron (NM_001286569, intron 13 of 21) 110173 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 189.5-62 chrX 64726933 64727250 + 0.833333 NA Intergenic Intergenic 249359 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 157.167-29 chr18 42684610 42685003 + 0.833333 NA intron (NR_046174, intron 9 of 9) L1P4|LINE|L1 430879 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 115.333-13 chr11 91877162 91877419 + 0.833333 NA Intergenic MER77|LTR|ERVL -347744 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 169.167-13 chr14 49136975 49137205 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR 449290 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 212.333-28 chr4 103119184 103119447 + 0.833333 NA intron (NM_001813, intron 44 of 48) L2a|LINE|L2 -19481 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 125-30 chr14 70928563 70928803 + 0.833333 NA intron (NM_014982, intron 1 of 35) intron (NM_014982, intron 1 of 35) 21224 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 152.667-45 chr2 108701533 108701862 + 0.833333 NA Intergenic L1MD|LINE|L1 -17785 NM_006267 5903 Hs.199561 NM_006267 ENSG00000153201 RANBP2 ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2 RAN binding protein 2 protein-coding 129-106 chrX 35742532 35742729 + 0.833333 NA Intergenic Intergenic -55712 NM_001370158 139604 NM_001099921 ENSG00000189023 MAGEB16 - MAGE family member B16 protein-coding 119.167-9 chr10 71594884 71595100 + 0.833333 NA intron (NM_052836, intron 9 of 12) intron (NM_052836, intron 9 of 12) -83072 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 152.167-71 chr8 78855676 78856088 + 0.833333 NA Intergenic Intergenic 18353 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 159.167-29 chr2 137747887 137748268 + 0.833333 NA Intergenic Intergenic 179855 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 219.333-2 chr1 78230495 78230784 + 0.833333 NA intron (NR_027310, intron 1 of 5) L2c|LINE|L2 1040 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 178.5-72 chr8 88701235 88701501 + 0.833333 NA Intergenic Intergenic -373885 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 286.167-4 chr15 68704429 68705079 + 0.833333 NA intron (NM_006091, intron 3 of 11) intron (NM_006091, intron 3 of 11) 63251 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 185.333-18 chr14 58630649 58631096 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -3196 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 132.667-86 chr6 165589774 165590081 + 0.833333 NA intron (NM_006661, intron 1 of 22) intron (NM_006661, intron 1 of 22) 72173 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 231.833-16 chr7 20949795 20950182 + 0.833333 NA intron (NR_126381, intron 2 of 5) L1PB3|LINE|L1 114557 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 153.833-70 chr9 117001113 117001476 + 0.833333 NA intron (NM_014010, intron 6 of 21) intron (NM_014010, intron 6 of 21) 179907 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 213.833-6 chr11 78484919 78485215 + 0.833333 NA intron (NM_024678, intron 7 of 13) L1PA8|LINE|L1 -48109 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 179.667-49 chr7 4826187 4826585 + 0.833333 NA intron (NM_018059, intron 5 of 14) L1MEd|LINE|L1 11064 NR_145804 109623455 NR_145804 SNORD165 - small nucleolar RNA, C/D box 165 snoRNA 198.5-30 chr4 86732798 86733148 + 0.833333 NA intron (NM_080685, intron 12 of 47) intron (NM_080685, intron 12 of 47) 116411 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 140.167-56 chr5 68283972 68284182 + 0.833333 NA intron (NM_181523, intron 7 of 15) intron (NM_181523, intron 7 of 15) -4442 NM_181524 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 197.833-29 chr5 110244259 110244706 + 0.833333 NA Intergenic Intergenic 269433 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 215-9 chr10 126969948 126970333 + 0.833333 NA intron (NM_001290223, intron 1 of 51) intron (NM_001290223, intron 1 of 51) 64731 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 223.833-16 chr2 202204578 202204992 + 0.833333 NA intron (NM_001277372, intron 23 of 23) intron (NM_001277372, intron 23 of 23) 33812 NM_001371394 146.833-3 chr1 244170495 244170711 + 0.833333 NA Intergenic L1MA9|LINE|L1 117398 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 152.833-34 chr2 156657614 156657886 + 0.833333 NA Intergenic Intergenic 221371 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 116-92 chr7 97064983 97065165 + 0.833333 NA Intergenic Intergenic -40243 NM_005221 1749 Hs.99348 NM_005221 ENSG00000105880 DLX5 SHFM1D distal-less homeobox 5 protein-coding 129.167-88 chr8 138637999 138638283 + 0.833333 NA intron (NM_152888, intron 47 of 64) intron (NM_152888, intron 47 of 64) -140411 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 140.333-84 chr8 8668596 8668875 + 0.833333 NA Intergenic AluSx1|SINE|Alu -33202 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 162.167-19 chr18 54906542 54906786 + 0.833333 NA intron (NM_001143829, intron 11 of 11) intron (NM_001143829, intron 11 of 11) 51384 NM_001143829 80323 Hs.120790 NM_025214 ENSG00000166510 CCDC68 SE57-1 coiled-coil domain containing 68 protein-coding 241.833-9 chr2 193361974 193362558 + 0.833333 NA Intergenic L1MEc|LINE|L1 612421 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 199-9 chr15 81688853 81689197 + 0.833333 NA Intergenic MER67A|LTR|ERV1 -314812 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 196.5-22 chr21 21302368 21302688 + 0.833333 NA intron (NM_001352592, intron 6 of 18) L1PA16|LINE|L1 155366 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 349.667-7 chr8 88522285 88523019 + 0.833333 NA Intergenic Intergenic -195169 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 223.333-40 chr7 123275500 123275823 + 0.833333 NA Intergenic Intergenic -75690 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 177.833-39 chr6 93918419 93918882 + 0.833333 NA Intergenic Intergenic 200347 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 126-27 chr13 91421282 91421482 + 0.833333 NA intron (NM_004466, intron 1 of 7) (TTATAA)n|Simple_repeat|Simple_repeat 22761 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 118.833-26 chr15 60171312 60171519 + 0.833333 NA Intergenic Intergenic 167104 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 178.833-35 chr8 85079524 85079785 + 0.833333 NA Intergenic AluSx1|SINE|Alu -27584 NM_001349637 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 205.833-33 chr8 85924069 85924451 + 0.833333 NA Intergenic Intergenic -96318 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 165.5-32 chr2 5504018 5504232 + 0.833333 NA Intergenic Intergenic 186993 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 179.5-11 chr16 51853843 51854178 + 0.833333 NA Intergenic MIR|SINE|MIR 91491 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 122.167-17 chr13 35433991 35434463 + 0.833333 NA intron (NM_015678, intron 39 of 57) intron (NM_015678, intron 39 of 57) 42462 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 155.167-36 chr4 76053006 76053592 + 0.833333 NA intron (NM_001130017, intron 1 of 9) intron (NM_001130017, intron 1 of 9) -17229 NM_001302123 6373 Hs.632592 NM_005409 ENSG00000169248 CXCL11 H174|I-TAC|IP-9|IP9|SCYB11|SCYB9B|b-R1 C-X-C motif chemokine ligand 11 protein-coding 116.167-25 chr16 6553027 6553281 + 0.833333 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -220655 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 252.667-7 chr15 62826289 62826634 + 0.833333 NA intron (NM_015059, intron 51 of 55) intron (NM_015059, intron 51 of 55) 2504 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 121.333-105 chr8 51863544 51863739 + 0.833333 NA intron (NM_001363193, intron 1 of 5) AluSz|SINE|Alu 35395 NM_052937 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 147-82 chr7 71616317 71616632 + 0.833333 NA intron (NM_022479, intron 6 of 10) intron (NM_022479, intron 6 of 10) -308704 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 252.5-4 chr12 12347463 12348132 + 0.833333 NA intron (NM_001363613, intron 1 of 4) AluSx1|SINE|Alu 2445 NM_001363613 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 309.833-6 chr8 117165614 117166205 + 0.833333 NA intron (NM_173851, intron 6 of 7) L1MA5A|LINE|L1 30914 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 143-63 chr5 15481233 15481550 + 0.833333 NA Intergenic Intergenic -18789 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 130.667-92 chr8 51615436 51615615 + 0.833333 NA intron (NM_144651, intron 2 of 22) intron (NM_144651, intron 2 of 22) 193920 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 194.667-13 chr11 15653148 15653555 + 0.833333 NA intron (NM_001293172, intron 1 of 2) intron (NM_001293172, intron 1 of 2) 9466 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 196.667-20 chr18 5235708 5235970 + 0.833333 NA TTS (NR_026849) TTS (NR_026849) 2190 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 190.167-16 chr14 105130859 105131231 + 0.833333 NA Intergenic AluSq|SINE|Alu 19819 NR_106823 102465458 NR_106823 ENSG00000273778 MIR6765 hsa-mir-6765 microRNA 6765 ncRNA 169.833-20 chr2 56264254 56264491 + 0.833333 NA intron (NM_001348516, intron 2 of 2) L2a|LINE|L2 -78602 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 125.833-2 chr1 40244944 40245204 + 0.833333 NA Intergenic Intergenic -2863 NM_001008740 127391 Hs.406265 NM_001008740 ENSG00000188800 TMCO2 dJ39G22.2 transmembrane and coiled-coil domains 2 protein-coding 227.833 chr1 196323631 196324094 + 0.833333 NA intron (NR_146057, intron 18 of 26) intron (NR_146057, intron 18 of 26) -235147 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 220.5-30 chr6 102006142 102006506 + 0.833333 NA intron (NM_001166247, intron 13 of 16) intron (NM_001166247, intron 13 of 16) 607339 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 183-3 chr10 28147192 28147656 + 0.833333 NA intron (NR_134518, intron 4 of 16) intron (NR_134518, intron 4 of 16) -74046 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 141.833-2 chr1 178739706 178740001 + 0.833333 NA intron (NM_152663, intron 1 of 19) intron (NM_152663, intron 1 of 19) 14609 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 167.5-14 chr10 125589628 125589932 + 0.833333 NA intron (NM_001318133, intron 3 of 3) L1M5|LINE|L1 15409 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 271.667-20 chr8 118153447 118153807 + 0.833333 NA intron (NR_146234, intron 4 of 5) intron (NR_146234, intron 4 of 5) -41808 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 135.167-30 chr14 87432676 87432870 + 0.833333 NA Intergenic MER119|DNA|hAT-Charlie 222521 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 137.167-67 chr8 14152736 14152928 + 0.833333 NA intron (NM_001322880, intron 4 of 6) L1MD1|LINE|L1 523142 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 198.167-25 chr3 163765357 163765790 + 0.833333 NA Intergenic Intergenic 405983 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 125.167-86 chr8 134597879 134598107 + 0.833333 NA promoter-TSS (NR_002438) promoter-TSS (NR_002438) -78 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 266.833-7 chr8 113399807 113400127 + 0.833333 NA intron (NM_001363185, intron 1 of 66) (TA)n|Simple_repeat|Simple_repeat -22815 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 184.333-56 chr7 6494405 6494650 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR -10375 NM_006854 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 201.667-56 chr9 109953971 109954383 + 0.833333 NA intron (NM_147150, intron 6 of 9) intron (NM_147150, intron 6 of 9) -94421 NM_001004065 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 128.667-37 chr14 51852733 51852946 + 0.833333 NA Intergenic Intergenic -7773 NM_053064 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 142.5-5 chr1 189077931 189078203 + 0.833333 NA Intergenic Intergenic 1397943 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 194.833-17 chr3 44295486 44296009 + 0.833333 NA intron (NM_001145030, intron 12 of 19) L1MD2|LINE|L1 -42372 NM_001029840 285343 Hs.55131 NM_173826 ENSG00000179152 TCAIM C3orf23|TOAG-1|TOAG1 T cell activation inhibitor, mitochondrial protein-coding 148.167-46 chr20 15364481 15364713 + 0.833333 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 167757 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 158.333-44 chr2 162282175 162282458 + 0.833333 NA intron (NM_022168, intron 6 of 15) intron (NM_022168, intron 6 of 15) 36368 NM_022168 64135 Hs.163173 NM_022168 ENSG00000115267 IFIH1 AGS7|Hlcd|IDDM19|MDA-5|MDA5|RLR-2|SGMRT1 interferon induced with helicase C domain 1 protein-coding 300.833-2 chr11 112342404 112342835 + 0.833333 NA intron (NR_126004, intron 2 of 3) AluSx|SINE|Alu 71870 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 129-56 chr3 111596665 111596971 + 0.833333 NA intron (NM_001318889, intron 5 of 7) intron (NM_001318889, intron 5 of 7) -1472 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 150.5-13 chr11 9980880 9981224 + 0.833333 NA intron (NM_030962, intron 13 of 39) intron (NM_030962, intron 13 of 39) 141910 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 134.333-28 chr12 59746323 59746610 + 0.833333 NA intron (NR_073056, intron 3 of 6) intron (NR_073056, intron 3 of 6) 57096 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 134.333-35 chr14 70556686 70556875 + 0.833333 NA Intergenic MER8|DNA|TcMar-Tigger -21776 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 138.167-41 chr2 60471122 60471333 + 0.833333 NA intron (NM_138559, intron 2 of 4) intron (NM_138559, intron 2 of 4) -79852 NR_132992 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 141.167-11 chr10 67146591 67146833 + 0.833333 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 134446 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 137.667-95 chr8 114084829 114085157 + 0.833333 NA Intergenic Intergenic -648054 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 258.833-4 chr11 81076986 81077484 + 0.833333 NA Intergenic Intergenic -314432 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 223.833-26 chr8 134546678 134547055 + 0.833333 NA intron (NM_020863, intron 11 of 15) intron (NM_020863, intron 11 of 15) -51205 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 173.5-16 chr12 19232658 19232993 + 0.833333 NA intron (NM_001256787, intron 1 of 25) intron (NM_001256787, intron 1 of 25) 27500 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 212-7 chr12 99166722 99167144 + 0.833333 NA intron (NM_152788, intron 14 of 25) L1ME1|LINE|L1 -11843 NM_001352189 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 128.5-68 chr6 124576339 124576501 + 0.833333 NA intron (NM_001300738, intron 4 of 7) Charlie1a|DNA|hAT-Charlie 293415 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 188.667-29 chr2 211501132 211501482 + 0.833333 NA intron (NM_001042599, intron 20 of 26) L1MA4|LINE|L1 883736 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 159-24 chr14 105098855 105099259 + 0.833333 NA intron (NR_110546, intron 5 of 5) intron (NR_110546, intron 5 of 5) 4910 NR_110546 102723354 Hs.569410 NR_110546 LINC02298 - long intergenic non-protein coding RNA 2298 ncRNA 189.834-3 chr16 52153626 52154180 + 0.833333 NA Intergenic L1PA5|LINE|L1 68622 NR_104655 102467079 Hs.98466 NR_104655 ENSG00000261749 LINC02180 - long intergenic non-protein coding RNA 2180 ncRNA 207.5-17 chr2 37531748 37532138 + 0.833333 NA Intergenic MIR|SINE|MIR 140256 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 199.667-54 chr6 133853506 133853926 + 0.833333 NA non-coding (NR_027030, exon 3 of 3) non-coding (NR_027030, exon 3 of 3) 32569 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 146.167-73 chr8 102079638 102079995 + 0.833333 NA intron (NM_001040624, intron 1 of 7) intron (NM_001040624, intron 1 of 7) 44518 NM_001040629 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 146-26 chr16 48477978 48478222 + 0.833333 NA Intergenic LTR48|LTR|ERV1 -92687 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 226-11 chr2 124010096 124010439 + 0.833333 NA Intergenic Intergenic 14907 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 149.5-18 chr12 27617578 27617800 + 0.833333 NA intron (NM_001198915, intron 2 of 26) MER2|DNA|TcMar-Tigger -78758 NM_001029874 387849 Hs.269836 NM_001029874 ENSG00000174236 REP15 RAB15EP RAB15 effector protein protein-coding 159.167-20 chr15 34667108 34667424 + 0.833333 NA Intergenic AluJo|SINE|Alu -11502 NR_146869 105370762 Hs.569462 NR_146869 ENSG00000261304 LINC02252 - long intergenic non-protein coding RNA 2252 ncRNA 180.5-55 chrX 40161669 40162010 + 0.833333 NA intron (NM_001123384, intron 1 of 13) intron (NM_001123384, intron 1 of 13) 15438 NM_001123384 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 322.167-4 chr18 59319024 59319828 + 0.833333 NA promoter-TSS (NM_181654) promoter-TSS (NM_181654) -777 NM_181654 339302 Hs.449884 NM_181654 ENSG00000166569 CPLX4 CPX-IV|CPXIV complexin 4 protein-coding 162.333-37 chr2 205611318 205611612 + 0.833333 NA intron (NM_205863, intron 21 of 21) intron (NM_205863, intron 21 of 21) -71035 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 166.333-42 chr2 148105826 148106132 + 0.833333 NA intron (NM_018328, intron 2 of 14) L1MEd|LINE|L1 -84375 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 193.5-48 chr6 27108037 27108486 + 0.833333 NA Intergenic Intergenic 24535 NM_021058 8970 Hs.591807 NM_021058 ENSG00000124635 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1 H2B family member j protein-coding 136.667-83 chr5 114736851 114737041 + 0.833333 NA intron (NR_130785, intron 1 of 12) intron (NR_130785, intron 1 of 12) 36467 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 211.5-21 chr4 53710858 53711225 + 0.833333 NA intron (NR_125918, intron 1 of 2) Tigger17a|DNA|TcMar-Tigger 15140 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 204-13 chr18 57574561 57574822 + 0.833333 NA intron (NM_001371095, intron 3 of 11) intron (NM_001371095, intron 3 of 11) 12011 NM_000140 2235 Hs.365365 NM_000140 ENSG00000066926 FECH EPP|EPP1|FCE ferrochelatase protein-coding 185.667-19 chr14 64512760 64513091 + 0.833333 NA intron (NM_001123329, intron 1 of 1) MIR|SINE|MIR -7712 NM_001304507 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 135.167-70 chr5 487902 488126 + 0.833333 NA intron (NM_001284351, intron 3 of 16) intron (NM_001284351, intron 3 of 16) 14778 NR_125375 100288152 Hs.535801 NR_125375 SLC9A3-AS1 UC011CLY.2 SLC9A3 antisense RNA 1 ncRNA 194.667-40 chr3 46681967 46682293 + 0.833333 NA intron (NR_135622, intron 10 of 24) intron (NR_135622, intron 10 of 24) 11549 NR_135622 259173 Hs.517937 NM_147129 ENSG00000178038 ALS2CL RN49018 ALS2 C-terminal like protein-coding 159.333-24 chr13 49914795 49915113 + 0.833333 NA non-coding (NR_023351, exon 3 of 3) non-coding (NR_023351, exon 3 of 3) 21386 NR_023351 57213 Hs.44235 NM_020456 ENSG00000123178 SPRYD7 C13orf1|CLLD6 SPRY domain containing 7 protein-coding 273.333-13 chr3 46622991 46623442 + 0.833333 NA intron (NM_001195442, intron 2 of 2) L1MEc|LINE|L1 10691 NM_001195442 100132146 Hs.679623 NM_001195442 ENSG00000283473 FAM240A - family with sequence similarity 240 member A protein-coding 231-14 chr19 6644458 6644934 + 0.833333 NA Intergenic AluJo|SINE|Alu 25462 NM_172014 8740 Hs.129708 NM_003807 ENSG00000125735 TNFSF14 CD258|HVEML|LIGHT|LTg TNF superfamily member 14 protein-coding 291.167-3 chr3 95608583 95609234 + 0.833333 NA Intergenic Intergenic 74285 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 171.333-11 chr1 219198647 219199016 + 0.833333 NA intron (NM_001300770, intron 3 of 4) intron (NM_001300770, intron 3 of 4) 23862 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 201.667-35 chr6 48589423 48589740 + 0.833333 NA Intergenic Intergenic -520892 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 148.667-56 chr4 133765676 133765929 + 0.833333 NA Intergenic Intergenic 435987 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 250.167 chr1 218784922 218785494 + 0.833333 NA intron (NR_031644, intron 4 of 6) L1ME2|LINE|L1 133303 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 204.833-27 chr6 48931124 48931450 + 0.833333 NA Intergenic L1MA3|LINE|L1 531966 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 188.167-21 chr2 107129860 107130234 + 0.833333 NA Intergenic L1MB2|LINE|L1 219478 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 232.167-7 chr11 98138910 98139493 + 0.833333 NA Intergenic Intergenic -881748 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 256.167-4 chr11 55569119 55569526 + 0.833333 NA Intergenic Intergenic -2806 NM_001004701 219428 Hs.553619 NM_001004701 ENSG00000279514 OR4C16 OR11-135 olfactory receptor family 4 subfamily C member 16 (gene/pseudogene) protein-coding 275.833-9 chr9 28872554 28873024 + 0.833333 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -9083 NR_030597 100126310 NR_030597 ENSG00000215966 MIR876 MIRN876|hsa-mir-876|mir-876 microRNA 876 ncRNA 175-59 chr7 55843416 55843669 + 0.833333 NA intron (NM_207366, intron 4 of 9) L1M2|LINE|L1 19210 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 134.5-45 chr2 85287031 85287240 + 0.833333 NA intron (NM_031283, intron 4 of 11) intron (NM_031283, intron 4 of 11) 40854 NM_001368095 10618 Hs.593382 NM_006464 ENSG00000152291 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 173.333-55 chr5 54038322 54038684 + 0.833333 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -86904 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 352.167-3 chr9 89289572 89290218 + 0.833333 NA Intergenic Intergenic -21300 NM_001827 1164 Hs.83758 NM_001827 ENSG00000123975 CKS2 CKSHS2 CDC28 protein kinase regulatory subunit 2 protein-coding 270.833-14 chr2 214544601 214545078 + 0.833333 NA intron (NR_159945, intron 4 of 4) MIR|SINE|MIR 34657 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 264.5-4 chr15 75635136 75635610 + 0.833333 NA Intergenic MIR|SINE|MIR 4950 NM_018285 55272 Hs.513043 NM_018285 ENSG00000177971 IMP3 BRMS2|C15orf12|MRPS4 IMP U3 small nucleolar ribonucleoprotein 3 protein-coding 220.5-34 chr7 113963843 113964158 + 0.833333 NA Intergenic MIR|SINE|MIR -44991 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 156.833-58 chr8 117823553 117823817 + 0.833333 NA intron (NM_000127, intron 4 of 10) intron (NM_000127, intron 4 of 10) 97228 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 342.833-3 chr14 66483914 66484606 + 0.833333 NA Intergenic Intergenic -2111 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 152.667-66 chr4 123528804 123529118 + 0.833333 NA Intergenic MamRTE1|LINE|RTE-BovB -121030 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 257.333-14 chr3 144421155 144421555 + 0.833333 NA Intergenic Intergenic 448274 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 116.5-9 chr10 71187414 71187684 + 0.833333 NA Intergenic AluSx1|SINE|Alu -25021 NM_170744 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 165.5-58 chr8 16202359 16202590 + 0.833333 NA Intergenic Intergenic -9683 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 126.333-69 chr20 58185631 58185826 + 0.833333 NA Intergenic Intergenic 34826 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 195.5-17 chr15 61786415 61786902 + 0.833333 NA Intergenic L1MA6|LINE|L1 56740 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 127.667-91 chr7 129356777 129357063 + 0.833333 NA intron (NM_001130720, intron 1 of 16) MIR3|SINE|MIR -11460 NM_001130723 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 205.667-5 chr10 106098375 106098797 + 0.833333 NA Intergenic L1M4|LINE|L1 -41579 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 222.333-16 chr2 51729340 51730021 + 0.833333 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) -640968 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 176.667-37 chr2 129723023 129723313 + 0.833333 NA Intergenic Intergenic 154323 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 215.333-25 chr2 119327439 119327804 + 0.833333 NA intron (NM_001322330, intron 2 of 5) MSTB|LTR|ERVL-MaLR 39121 NM_001322330 130355 Hs.99488 NM_001017927 ENSG00000186132 C2orf76 AIM29 chromosome 2 open reading frame 76 protein-coding 153.167-30 chr20 54891232 54891763 + 0.833333 NA Intergenic Intergenic 415904 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 219.333-40 chr8 34884999 34885346 + 0.833333 NA Intergenic LTR26B|LTR|ERV1 101251 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 136.167-33 chr18 62354690 62354958 + 0.833333 NA intron (NM_001278268, intron 4 of 9) intron (NM_001278268, intron 4 of 9) 29514 NM_001270951 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 202-11 chr14 25310649 25310988 + 0.833333 NA Intergenic Intergenic -260521 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 215.167-27 chr7 2702120 2702578 + 0.833333 NA intron (NM_133463, intron 2 of 6) intron (NM_133463, intron 2 of 6) 14147 NM_001321766 155185 Hs.42221 NM_133463 ENSG00000174945 AMZ1 - archaelysin family metallopeptidase 1 protein-coding 192.5-39 chr5 24662201 24662487 + 0.833333 NA Intergenic LTR40a|LTR|ERVL -17366 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 140.667-84 chr8 80716627 80717136 + 0.833333 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 157587 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 246.5-6 chr11 29500464 29500957 + 0.833333 NA Intergenic L1MC4|LINE|L1 -93703 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 138.667-109 chr8 135599035 135599371 + 0.833333 NA intron (NM_006558, intron 6 of 8) intron (NM_006558, intron 6 of 8) 141747 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 223.333-6 chr10 83469098 83469425 + 0.833333 NA Intergenic L1MC3|LINE|L1 207828 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 200.167-17 chr14 65681595 65681912 + 0.833333 NA intron (NR_038167, intron 7 of 8) MIRb|SINE|MIR 210651 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 127.833-23 chr14 82454918 82455199 + 0.833333 NA Intergenic AluSx1|SINE|Alu -187574 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 131.667-72 chr22 42858640 42858883 + 0.833333 NA Intergenic Intergenic -1488 NM_001142293 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 216.333-46 chr8 89476210 89476567 + 0.833333 NA Intergenic Intergenic 281323 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 183.167-46 chr5 62116753 62116986 + 0.833333 NA Intergenic Intergenic -189293 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 125.167-65 chr5 121634281 121634815 + 0.833333 NA Intergenic MIRb|SINE|MIR -217334 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 171.333-38 chr2 200837907 200838174 + 0.833333 NA Intergenic Intergenic 25654 NM_001207068 9689 Hs.355983 NM_014670 ENSG00000082153 BZW1 BZAP45|Nbla10236 basic leucine zipper and W2 domains 1 protein-coding 169.333-40 chr20 1349783 1350064 + 0.833333 NA intron (NR_040047, intron 1 of 2) L1MA3|LINE|L1 -20784 NM_080489 27111 Hs.657015 NM_015685 ENSG00000125775 SDCBP2 SITAC|SITAC18|ST-2|ST2 syndecan binding protein 2 protein-coding 134.167-75 chr7 110082167 110082414 + 0.833333 NA Intergenic MER1A|DNA|hAT-Charlie -122077 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 178.667-62 chr6 161179201 161179578 + 0.833333 NA intron (NM_020133, intron 2 of 8) intron (NM_020133, intron 2 of 8) -17407 NR_024277 79992 Hs.664873 NM_024929 ENSG00000279355 AGPAT4-IT1 C6orf59|NCRNA00241 AGPAT4 intronic transcript 1 ncRNA 230.833-9 chr2 72613110 72613586 + 0.833333 NA intron (NR_135774, intron 6 of 19) intron (NR_135774, intron 6 of 19) 212685 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 217.333-27 chr5 19781640 19781948 + 0.833333 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 104478 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 129.5-7 chr1 159315082 159315383 + 0.833333 NA promoter-TSS (NM_001004467) promoter-TSS (NM_001004467) -573 NM_001004467 441911 Hs.553833 NM_001004467 ENSG00000196266 OR10J3 OR1-25|OR10J3P olfactory receptor family 10 subfamily J member 3 protein-coding 212.333-37 chr7 94447850 94448255 + 0.833333 NA Intergenic L1ME4a|LINE|L1 53491 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 EDSARTH2|EDSCV|OI4 collagen type I alpha 2 chain protein-coding 114.833-23 chr16 25551246 25551483 + 0.833333 NA Intergenic Intergenic -140595 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 160.5-18 chr16 73481693 73481971 + 0.833333 NA Intergenic Intergenic 95027 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 181.833-35 chr3 153686358 153686638 + 0.833333 NA intron (NR_146713, intron 2 of 6) intron (NR_146713, intron 2 of 6) 76028 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 137.333-41 chr18 6680745 6681044 + 0.833333 NA Intergenic MIR|SINE|MIR -48822 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 141.167-15 chr11 39290932 39291242 + 0.833333 NA Intergenic L2|LINE|L2 642229 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 132-20 chr14 24525434 24525747 + 0.833333 NA Intergenic L1MEg|LINE|L1 -17325 NM_001308083 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 179 chr1 10428329 10428823 + 0.833333 NA Intergenic AluSz|SINE|Alu -1857 NM_199294 378708 Hs.412311 NM_199294 ENSG00000175279 CENPS APITD1|CENP-S|FAAP16|MHF1 centromere protein S protein-coding 135.5 chr1 37340102 37340311 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 134237 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 149-67 chr5 113336654 113336845 + 0.833333 NA intron (NM_001085377, intron 3 of 18) MLT2F|LTR|ERVL -41811 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 150-21 chr14 61099331 61099526 + 0.833333 NA Intergenic Intergenic -117738 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 191.333-6 chr12 846983 847260 + 0.833333 NA intron (NM_001184985, intron 4 of 27) intron (NM_001184985, intron 4 of 27) 85955 NM_001297420 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 140.833-39 chr21 23182770 23183113 + 0.833333 NA Intergenic L1MEg2|LINE|L1 103657 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 192-3 chr1 193916039 193916354 + 0.833333 NA Intergenic Intergenic 611451 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 207.167-25 chr5 58469143 58469469 + 0.833333 NA Intergenic Intergenic -9167 NM_001252226 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 127.167-65 chr4 29640809 29641015 + 0.833333 NA Intergenic Intergenic 426620 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 139-75 chr7 136838671 136838978 + 0.833333 NA Intergenic L1MEc|LINE|L1 -29828 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 300.167-4 chr15 65171478 65171955 + 0.833333 NA intron (NM_006660, intron 3 of 13) intron (NM_006660, intron 3 of 13) 13626 NM_006660 10845 Hs.113823 NM_006660 ENSG00000166855 CLPX EPP2 caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding 124.833-8 chr10 81986458 81986682 + 0.833333 NA intron (NR_163253, intron 2 of 10) Charlie9|DNA|hAT-Charlie 108883 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 182.833-40 chr5 51699793 51700237 + 0.833333 NA Intergenic L1PA8A|LINE|L1 -308016 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 117-2 chr1 49103431 49103744 + 0.833333 NA intron (NM_001323575, intron 4 of 12) MIR3|SINE|MIR -153824 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 232.333-31 chr6 132959761 132960039 + 0.833333 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -128180 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 225.333-16 chr2 172051119 172051530 + 0.833333 NA intron (NM_001322279, intron 1 of 9) intron (NM_001322279, intron 1 of 9) -34183 NM_178120 1745 Hs.407015 NM_178120 ENSG00000144355 DLX1 - distal-less homeobox 1 protein-coding 161.667-70 chr6 45000496 45000833 + 0.833333 NA intron (NM_181356, intron 8 of 12) L4_A_Mam|LINE|RTE-X 197106 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 269.833-8 chr14 67966624 67967104 + 0.833333 NA intron (NM_133509, intron 7 of 10) L1ME3G|LINE|L1 143272 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 264.167-13 chr2 195628606 195629059 + 0.833333 NA Intergenic L2|LINE|L2 -28126 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 222.167-9 chr12 55929126 55929525 + 0.833333 NA Intergenic Intergenic -1431 NM_032345 84305 Hs.505687 NM_032345 ENSG00000170473 PYM1 PYM|WIBG PYM homolog 1, exon junction complex associated factor protein-coding 115.5-60 chr3 24292088 24292305 + 0.833333 NA intron (NM_001354708, intron 2 of 9) L1ME4b|LINE|L1 140872 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 171-19 chr19 27734282 27734622 + 0.833333 NA Intergenic HSAT4|Satellite|centr -58979 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 180.5-30 chr2 156094552 156095051 + 0.833333 NA intron (NR_110250, intron 1 of 3) L1MD2|LINE|L1 160130 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 320-5 chr5 13459089 13459516 + 0.833333 NA Intergenic MER67D|LTR|ERV1 -426416 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 256.5-22 chr3 64998204 64998703 + 0.833333 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) -310453 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 191.667-33 chr3 52098562 52098845 + 0.833333 NA intron (NM_015426, intron 9 of 10) intron (NM_015426, intron 9 of 10) -33591 NR_027331 100128378 Hs.640106 NM_001123039 LINC00696 C3orf74 long intergenic non-protein coding RNA 696 ncRNA 142-37 chr18 13066143 13066464 + 0.833333 NA intron (NM_032142, intron 21 of 44) intron (NM_032142, intron 21 of 44) 74941 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 165.333-46 chr5 81645235 81645496 + 0.833333 NA intron (NM_012446, intron 2 of 16) intron (NM_012446, intron 2 of 16) 105888 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 117.167-64 chr3 100971359 100971513 + 0.833333 NA intron (NM_001349332, intron 1 of 35) intron (NM_001349332, intron 1 of 35) 22054 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 148.5-44 chr21 19230237 19230627 + 0.833333 NA Intergenic Intergenic -470620 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 153.167-62 chr9 37339064 37339530 + 0.833333 NA intron (NR_110317, intron 5 of 7) intron (NR_110317, intron 5 of 7) -83399 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 166.833-4 chr1 222827790 222828058 + 0.833333 NA intron (NM_032890, intron 1 of 9) intron (NM_032890, intron 1 of 9) 12885 NM_032890 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 158.5-10 chr10 61329369 61329707 + 0.833333 NA Intergenic L1MC1|LINE|L1 -123101 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 351.333-5 chr22 18068121 18068930 + 0.833333 NA Intergenic Intergenic -9395 NM_001199319 55670 Hs.517400 NM_017929 ENSG00000215193 PEX26 PBD7A|PBD7B|PEX26M1T|Pex26pM1T peroxisomal biogenesis factor 26 protein-coding 164.333-46 chr4 25289429 25289768 + 0.833333 NA Intergenic L1PA10|LINE|L1 -23176 NM_001318148 29063 Hs.278945 NM_024936 ENSG00000168228 ZCCHC4 HSPC052|ZGRF4 zinc finger CCHC-type containing 4 protein-coding 231-26 chr7 14943518 14943958 + 0.833333 NA intron (NM_001350717, intron 1 of 24) MER63D|DNA|hAT-Blackjack 31120 NM_001350707 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 115-48 chr21 45594246 45594430 + 0.833333 NA intron (NR_146912, intron 1 of 1) L1MEg|LINE|L1 684 NR_146912 105372840 Hs.406003 NR_146912 ENSG00000233922 LINC01694 - long intergenic non-protein coding RNA 1694 ncRNA 213.333-20 chr2 145181831 145182138 + 0.833333 NA Intergenic Intergenic 514017 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 188.833-34 chr6 135958459 135958916 + 0.833333 NA intron (NM_018945, intron 2 of 12) intron (NM_018945, intron 2 of 12) 106986 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 202.667-55 chr9 109516404 109516686 + 0.833333 NA Intergenic L2c|LINE|L2 -5000 NR_037493 100500898 NR_037493 ENSG00000263861 MIR3927 - microRNA 3927 ncRNA 199.333-18 chr18 9932011 9932316 + 0.833333 NA intron (NM_194434, intron 2 of 5) intron (NM_194434, intron 2 of 5) 18147 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 306.667-6 chr5 127096123 127096641 + 0.833333 NA Intergenic Intergenic -22890 NM_001164478 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 170.333-2 chr1 68429286 68429591 + 0.833333 NA 3' UTR (NM_000329, exon 14 of 14) 3' UTR (NM_000329, exon 14 of 14) 20516 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 193.333-54 chr8 108767195 108767540 + 0.833333 NA intron (NR_136411, intron 1 of 3) L4_C_Mam|LINE|RTE-X 20227 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 129.167-8 chr10 73776570 73776740 + 0.833333 NA TTS (NM_001284194) TTS (NM_001284194) 4364 NM_001284194 170384 Hs.588854 NM_173540 ENSG00000196968 FUT11 FUCTXI fucosyltransferase 11 protein-coding 136.5-28 chr13 90733142 90733335 + 0.833333 NA Intergenic Intergenic 193359 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 168-48 chr4 67960270 67960477 + 0.833333 NA intron (NM_001114387, intron 1 of 9) MIR|SINE|MIR 3120 NM_001114387 339967 Hs.450110 NM_182606 ENSG00000187054 TMPRSS11A ECRG1 transmembrane serine protease 11A protein-coding 145.833-29 chr16 9905721 9906306 + 0.833333 NA intron (NM_001134408, intron 3 of 13) intron (NM_001134408, intron 3 of 13) 276054 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 126.833-66 chr8 49359532 49359814 + 0.833333 NA Intergenic L1M4c|LINE|L1 152507 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 625.667 chr14 60003227 60004488 + 0.833333 NA intron (NR_075071, intron 21 of 32) intron (NR_075071, intron 21 of 32) 84144 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 193.667-47 chr7 41085864 41086127 + 0.833333 NA Intergenic Intergenic -15609 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 150.5-15 chr11 112534343 112534640 + 0.833333 NA non-coding (NR_104155, exon 4 of 4) non-coding (NR_104155, exon 4 of 4) 21311 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 185.167-3 chr10 84017450 84017837 + 0.833333 NA Intergenic L1MEf|LINE|L1 -121866 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 179.833-21 chr22 35587279 35587562 + 0.833333 NA Intergenic MIR|SINE|MIR 29909 NM_005368 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 119.5-45 chr2 17159364 17159656 + 0.833333 NA Intergenic LTR78B|LTR|ERV1 358930 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 189.667-31 chr21 27147194 27147636 + 0.833333 NA Intergenic Intergenic -180327 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 156.333-28 chr14 26956678 26956897 + 0.833333 NA Intergenic Intergenic 48145 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 220.5-40 chr9 80058410 80058746 + 0.833333 NA Intergenic Intergenic 83555 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 132.5-56 chr21 31105639 31105871 + 0.833333 NA Intergenic LTR29|LTR|ERV1 55185 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 249.667-25 chr21 26984858 26985267 + 0.833333 NA Intergenic Intergenic -17974 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 504.333 chr16 77262001 77263218 + 0.833333 NA Intergenic L1MA7|LINE|L1 63201 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 142.333-37 chr16 10119347 10119624 + 0.833333 NA intron (NM_001134408, intron 2 of 13) L2c|LINE|L2 62582 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 213.167 chr1 108033008 108033452 + 0.833333 NA Intergenic L2c|LINE|L2 -68050 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 139-20 chr17 32398877 32399180 + 0.833333 NA Intergenic Charlie1a|DNA|hAT-Charlie -45482 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 279 chr1 33221478 33222100 + 0.833333 NA Intergenic Intergenic -34703 NM_152493 149076 Hs.743358 NM_152493 ENSG00000160094 ZNF362 RN|lin-29 zinc finger protein 362 protein-coding 116.5-67 chr4 171206362 171206560 + 0.833333 NA Intergenic L1MD|LINE|L1 20277 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 163.167-36 chr5 104983302 104983903 + 0.833333 NA Intergenic L1MA1|LINE|L1 -115872 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 154.167-23 chr16 76115759 76116121 + 0.833333 NA Intergenic L1MA8|LINE|L1 -161461 NM_001322179 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 113.167-84 chr9 129692653 129692835 + 0.833333 NA intron (NM_016307, intron 1 of 3) L1MC1|LINE|L1 25962 NR_132102 101929437 Hs.112596 NR_132102 ENSG00000236024 PRRX2-AS1 - PRRX2 antisense RNA 1 ncRNA 143.5-66 chr5 114336340 114336599 + 0.833333 NA Intergenic L2c|LINE|L2 -25601 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 181.167-18 chr3 89339655 89340098 + 0.833333 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 232255 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 171.833-24 chr2 222220588 222220877 + 0.833333 NA intron (NM_181457, intron 6 of 7) intron (NM_181457, intron 6 of 7) -77415 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 283.667-15 chr5 28454275 28454674 + 0.833333 NA Intergenic L1M5|LINE|L1 -166809 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 220.667-42 chr8 68377487 68377942 + 0.833333 NA intron (NR_146187, intron 1 of 13) intron (NR_146187, intron 1 of 13) -46223 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 174.167-3 chr1 161096485 161096867 + 0.833333 NA Intergenic Intergenic -1685 NM_001007255 126823 Hs.507290 NM_152366 ENSG00000162755 KLHDC9 KARCA1 kelch domain containing 9 protein-coding 135.833-42 chr20 54442325 54442566 + 0.833333 NA Intergenic Arthur1B|DNA|hAT-Tip100 -33148 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 180.833-5 chr10 59083511 59083862 + 0.833333 NA Intergenic Intergenic 84168 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 201.667-42 chr7 100935352 100935693 + 0.833333 NA Intergenic MER1A|DNA|hAT-Charlie -14012 NM_005960 4584 Hs.703577 NM_005960 ENSG00000169894 MUC3A MUC-3A|MUC3 mucin 3A, cell surface associated protein-coding 198.167-14 chr18 4808935 4809200 + 0.833333 NA Intergenic Intergenic -272115 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 122.333-77 chr3 191682286 191682481 + 0.833333 NA Intergenic Intergenic 221220 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 167.167-55 chr7 45900772 45900990 + 0.833333 NA Intergenic Intergenic 12393 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 142.833-49 chr4 32354156 32354566 + 0.833333 NA Intergenic Intergenic 3323 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 142.333-103 chrX 39685401 39685810 + 0.833333 NA Intergenic Intergenic 24389 NR_037501 100500822 NR_037501 ENSG00000263730 MIR3937 - microRNA 3937 ncRNA 126.667-55 chr3 1783924 1784119 + 0.833333 NA Intergenic Intergenic -314782 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 118.667-88 chr4 92650951 92651183 + 0.833333 NA intron (NM_001286838, intron 2 of 14) ERVL-B4-int|LTR|ERVL 346668 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 117-65 chr21 14125917 14126211 + 0.833333 NA intron (NM_001303001, intron 7 of 7) L1ME1|LINE|L1 80885 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 244.5-19 chr4 31902849 31903173 + 0.833333 NA Intergenic Intergenic -94368 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 133.333-22 chr11 33136394 33136571 + 0.833333 NA intron (NM_001326, intron 3 of 20) intron (NM_001326, intron 3 of 20) 24998 NM_001326 1479 Hs.44402 NM_001326 ENSG00000176102 CSTF3 CSTF-77 cleavage stimulation factor subunit 3 protein-coding 129-49 chr22 25553758 25554039 + 0.833333 NA Intergenic MER21B|LTR|ERVL -10777 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 216.667-33 chr4 103563202 103563611 + 0.833333 NA Intergenic L1MEg|LINE|L1 138364 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 119.833-67 chr5 21866392 21866653 + 0.833333 NA intron (NM_004061, intron 6 of 14) THE1B-int|LTR|ERVL-MaLR -17932 NR_132787 106635539 NR_132787 SNORA105A - small nucleolar RNA, H/ACA box 105A snoRNA 171.167-24 chr2 81623165 81623517 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -156395 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 273.833-3 chr12 111774840 111775378 + 0.833333 NA intron (NM_000690, intron 1 of 12) L1ME3G|LINE|L1 8176 NM_000690 217 Hs.604551 NM_000690 ENSG00000111275 ALDH2 ALDH-E2|ALDHI|ALDM aldehyde dehydrogenase 2 family member protein-coding 142.167-57 chr4 7079366 7079646 + 0.833333 NA Intergenic L1PA10|LINE|L1 -11442 NM_025196 80273 Hs.443723 NM_025196 ENSG00000109519 GRPEL1 GrpE|HMGE|mt-GrpE#1 GrpE like 1, mitochondrial protein-coding 240.5-20 chr6 129591264 129591704 + 0.833333 NA intron (NM_033515, intron 12 of 14) intron (NM_033515, intron 12 of 14) 118693 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 120.667-46 chr15 87905339 87905739 + 0.833333 NA intron (NM_001012338, intron 17 of 19) intron (NM_001012338, intron 17 of 19) 40729 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 232.333-24 chr5 25008736 25009159 + 0.833333 NA Intergenic Intergenic -168364 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 319.167-7 chr9 102637495 102638211 + 0.833333 NA intron (NR_103830, intron 3 of 4) intron (NR_103830, intron 3 of 4) 118216 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 208.5-9 chr10 43244997 43245426 + 0.833333 NA intron (NM_145313, intron 1 of 12) L1MB7|LINE|L1 -15472 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 158-45 chr6 44337801 44338117 + 0.833333 NA Intergenic Intergenic -4701 NM_145026 221409 Hs.135283 NM_145026 ENSG00000249481 SPATS1 DDIP|SPATA8|SRSP1 spermatogenesis associated serine rich 1 protein-coding 167-29 chr19 55815965 55816240 + 0.833333 NA intron (NM_001297743, intron 1 of 8) intron (NM_001297743, intron 1 of 8) 15992 NM_001297743 204801 Hs.375039 NM_145007 ENSG00000179873 NLRP11 CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7 NLR family pyrin domain containing 11 protein-coding 208.5-27 chr2 139473724 139474128 + 0.833333 NA Intergenic Intergenic 576602 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 129.667-81 chr5 35724309 35724464 + 0.833333 NA intron (NM_024867, intron 20 of 36) intron (NM_024867, intron 20 of 36) 106523 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 170.167-37 chr22 27850689 27850922 + 0.833333 NA TTS (NM_001284277) TTS (NM_001284277) -49049 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 118-84 chr4 88142226 88142391 + 0.833333 NA intron (NM_001257386, intron 1 of 15) L1MEg|LINE|L1 16331 NM_004827 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 226-19 chr4 152318746 152319226 + 0.833333 NA Intergenic Intergenic -18669 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 FBXW7-AS1 DEAR|DEspR FBXW7 antisense RNA 1 ncRNA 137.833-31 chr4 176725651 176725960 + 0.833333 NA intron (NM_005429, intron 3 of 6) intron (NM_005429, intron 3 of 6) 67117 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 279.5-17 chrX 65414483 65414928 + 0.833333 NA Intergenic Intergenic -74030 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 121.167-38 chr2 24223961 24224211 + 0.833333 NA intron (NM_001348182, intron 28 of 38) intron (NM_001348182, intron 28 of 38) 49033 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 163-14 chr13 54350442 54350747 + 0.833333 NA Intergenic Intergenic -38546 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 186.667-60 chr4 123476895 123477454 + 0.833333 NA Intergenic MSTB|LTR|ERVL-MaLR 77634 NM_005841 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 118.5-10 chr1 183494953 183495175 + 0.833333 NA intron (NM_001174061, intron 1 of 21) AluSx3|SINE|Alu 22565 NM_001350221 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7 nonsense mediated mRNA decay factor protein-coding 209.333-36 chr4 67432028 67432493 + 0.833333 NA Intergenic HAL1ME|LINE|L1 -10260 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 299-8 chr2 21373140 21373791 + 0.833333 NA Intergenic Intergenic 249479 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 187-2 chr1 76139567 76140028 + 0.833333 NA intron (NM_001349108, intron 1 of 3) MIR3|SINE|MIR 65051 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 164.333-85 chr8 130691037 130691237 + 0.833333 NA Intergenic L1P4d|LINE|L1 -247463 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 127.333-7 chr1 168796605 168796818 + 0.833333 NA Intergenic L1ME1|LINE|L1 9770 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 125.5-54 chr3 157642494 157642718 + 0.833333 NA Intergenic Intergenic 99262 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 145.333-50 chr3 115289539 115289922 + 0.833333 NA Intergenic AluJr4|SINE|Alu -142442 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 134.167-63 chr4 66571025 66571261 + 0.833333 NA Intergenic Intergenic 294319 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 210.833-29 chr7 24356756 24357130 + 0.833333 NA Intergenic U6|snRNA|snRNA 72753 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 154 chr1 164419083 164419417 + 0.833333 NA Intergenic Intergenic -140110 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 147.167-38 chr20 3359569 3359825 + 0.833333 NA intron (NM_001009984, intron 6 of 36) intron (NM_001009984, intron 6 of 36) 47965 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 153.5-24 chr16 75567535 75567789 + 0.833333 NA intron (NM_007285, intron 2 of 3) intron (NM_007285, intron 2 of 3) 1283 NM_007285 11345 Hs.461379 NM_007285 ENSG00000034713 GABARAPL2 ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2 GABA type A receptor associated protein like 2 protein-coding 113.167-60 chr5 172560660 172560840 + 0.833333 NA Intergenic Intergenic -1736 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 177.667-64 chr6 117895420 117895731 + 0.833333 NA Intergenic L2b|LINE|L2 -11689 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 132.167-51 chr4 11681357 11681591 + 0.833333 NA Intergenic Intergenic 87994 NR_146995 105374484 Hs.581972 NR_146995 ENSG00000248300 LINC02360 - long intergenic non-protein coding RNA 2360 ncRNA 151.167-29 chr2 83669061 83669326 + 0.833333 NA Intergenic Intergenic 146379 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 180.833-10 chr12 26592253 26592616 + 0.833333 NA intron (NM_002223, intron 32 of 56) L1MA3|LINE|L1 240760 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 323.333-10 chr5 132908240 132908933 + 0.833333 NA intron (NM_014423, intron 5 of 20) intron (NM_014423, intron 5 of 20) 34918 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 275.667-10 chr17 8544433 8545056 + 0.833333 NA intron (NM_001256012, intron 13 of 42) intron (NM_001256012, intron 13 of 42) 85981 NM_005964 4628 Hs.16355 NM_005964 ENSG00000133026 MYH10 NMMHC-IIB|NMMHCB myosin heavy chain 10 protein-coding 136.167-45 chr20 56714430 56714650 + 0.833333 NA Intergenic AluSx1|SINE|Alu 85234 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 121.5-45 chr16 63803369 63803589 + 0.833333 NA Intergenic Intergenic 1318584 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 155.167-13 chr13 108423439 108423841 + 0.833333 NA Intergenic L1M5|LINE|L1 154011 NM_001145645 10673 Hs.525157 NM_006573 ENSG00000102524 TNFSF13B BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 TNF superfamily member 13b protein-coding 264.667-22 chr4 64549838 64550213 + 0.833333 NA Intergenic L1ME1|LINE|L1 -140565 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 119.333-119 chr9 78011727 78011991 + 0.833333 NA intron (NM_002072, intron 1 of 6) HAL1b|LINE|L1 19952 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 197.833-9 chr16 74797866 74798259 + 0.833333 NA Intergenic L1MEc|LINE|L1 -23242 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 131.833-36 chr2 160156324 160156572 + 0.833333 NA intron (NM_001282390, intron 6 of 13) intron (NM_001282390, intron 6 of 13) 43824 NM_001282390 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 198.5-6 chr11 99566557 99566925 + 0.833333 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 10596 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 123.667-111 chr8 115396336 115396654 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR 271518 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 177.667-10 chr11 30664330 30664826 + 0.833333 NA Intergenic THE1C|LTR|ERVL-MaLR -78225 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 147.667-47 chr3 183273279 183273564 + 0.833333 NA TTS (NM_032047) TTS (NM_032047) 20168 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 166-53 chr5 174013005 174013301 + 0.833333 NA Intergenic Intergenic 23983 NM_001144954 133491 Hs.131469 NM_001144954 ENSG00000185056 C5orf47 - chromosome 5 open reading frame 47 protein-coding 164.833-41 chr5 51846688 51847018 + 0.833333 NA Intergenic Intergenic -161178 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 300.333-8 chr16 47885401 47885852 + 0.833333 NA intron (NR_110650, intron 4 of 5) MIR|SINE|MIR 1504 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LINC02192 - long intergenic non-protein coding RNA 2192 ncRNA 121.5-58 chr2 198630391 198630601 + 0.833333 NA Intergenic L1M6|LINE|L1 -255399 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 141-43 chr2 83651034 83651350 + 0.833333 NA Intergenic Intergenic 128378 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 135.5-49 chr2 209881582 209881887 + 0.833333 NA intron (NM_032504, intron 25 of 63) LTR86A2|LTR|ERVL 109741 NM_032504 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 126-7 chr1 210716968 210717153 + 0.833333 NA intron (NM_002238, intron 10 of 10) intron (NM_002238, intron 10 of 10) 387694 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 151.333-63 chr4 15710484 15711007 + 0.833333 NA intron (NM_004334, intron 3 of 8) L1MA6|LINE|L1 7680 NM_004334 683 Hs.720344 NM_004334 ENSG00000109743 BST1 CD157 bone marrow stromal cell antigen 1 protein-coding 150.667-96 chr8 139006213 139006586 + 0.833333 NA Intergenic L1MB3|LINE|L1 -92358 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 201-30 chr4 100534200 100534684 + 0.833333 NA Intergenic Intergenic -16420 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 141.667-101 chr7 3196051 3196268 + 0.833333 NA Intergenic MER117|DNA|hAT-Charlie -37586 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 128.333-77 chr3 17165330 17165604 + 0.833333 NA intron (NM_014744, intron 21 of 21) intron (NM_014744, intron 21 of 21) 232271 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 201-50 chr9 98224483 98224845 + 0.833333 NA intron (NR_051978, intron 4 of 11) intron (NR_051978, intron 4 of 11) 4553 NR_106913 102465514 NR_106913 ENSG00000278412 MIR6854 hsa-mir-6854 microRNA 6854 ncRNA 255.833-3 chr14 47315688 47316104 + 0.833333 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 27350 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 276.167 chr11 113911223 113911890 + 0.833333 NA intron (NM_006028, intron 2 of 8) AluSx1|SINE|Alu 2715 NM_001363563 9177 Hs.241377 NM_006028 ENSG00000149305 HTR3B 5-HT3B 5-hydroxytryptamine receptor 3B protein-coding 231.667-20 chr2 75889463 75889846 + 0.833333 NA Intergenic Intergenic -178739 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 128.333-40 chr14 76807741 76808037 + 0.833333 NA intron (NM_001370747, intron 3 of 11) intron (NM_001370747, intron 3 of 11) 4993 NM_001370748 23357 Hs.497448 NM_015305 ENSG00000013523 ANGEL1 Ccr4e|KIAA0759 angel homolog 1 protein-coding 182.167-29 chr4 52372843 52373151 + 0.833333 NA Intergenic Intergenic 283542 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 155.667-28 chr16 72955134 72955366 + 0.833333 NA intron (NM_001164766, intron 1 of 8) intron (NM_001164766, intron 1 of 8) 92878 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 151.333-97 chr9 72202143 72202370 + 0.833333 NA intron (NM_001242506, intron 3 of 14) intron (NM_001242506, intron 3 of 14) 52816 NM_001242506 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 158.167-30 chr20 22402901 22403152 + 0.833333 NA intron (NR_027090, intron 1 of 2) intron (NR_027090, intron 1 of 2) 17617 NR_027090 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 178.167-3 chr10 61257864 61258252 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR -194581 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 226.667-35 chrX 85228607 85229053 + 0.833333 NA intron (NM_001367858, intron 1 of 11) L2|LINE|L2 14949 NM_001367858 340562 Hs.640783 NM_001012980 ENSG00000184788 SATL1 - spermidine/spermine N1-acetyl transferase like 1 protein-coding 166.167-49 chr5 119091342 119091790 + 0.833333 NA intron (NM_001290321, intron 1 of 43) L1M3f|LINE|L1 20479 NM_001290321 1657 Hs.181042 NM_005509 ENSG00000172869 DMXL1 - Dmx like 1 protein-coding 158.667-11 chr10 71246591 71246855 + 0.833333 NA intron (NM_001244889, intron 1 of 15) MIRc|SINE|MIR -28495 NR_038453 728978 Hs.646725 NR_038453 ENSG00000237512 UNC5B-AS1 - UNC5B antisense RNA 1 ncRNA 157.833-47 chr3 190596187 190596485 + 0.833333 NA intron (NR_157352, intron 3 of 10) intron (NR_157352, intron 3 of 10) 82251 NR_157353 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 151.833-39 chr3 112326687 112327065 + 0.833333 NA intron (NR_147411, intron 2 of 4) intron (NR_147411, intron 2 of 4) -5697 NM_001365855 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 127-27 chr14 19864007 19864327 + 0.833333 NA Intergenic Intergenic 5006 NM_001348266 283617 NM_001348266 ENSG00000176290 OR4K3 OR14-10|OR4K3P olfactory receptor family 4 subfamily K member 3 (gene/pseudogene) protein-coding 203.667-31 chr6 41615309 41615749 + 0.833333 NA Intergenic Intergenic 16806 NR_039784 100616178 NR_039784 ENSG00000266494 MIR4641 - microRNA 4641 ncRNA 144.5-35 chr16 79710050 79710514 + 0.833333 NA Intergenic THE1C|LTR|ERVL-MaLR -60189 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 147.333-8 chr10 74412565 74412841 + 0.833333 NA intron (NM_001369124, intron 6 of 9) Tigger1|DNA|TcMar-Tigger 116621 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 118-31 chr14 51915601 51915909 + 0.833333 NA TTS (NR_126331) TTS (NR_126331) 2816 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 116.333-43 chr17 50372673 50372853 + 0.833333 NA promoter-TSS (NM_001166131) promoter-TSS (NM_001166131) 421 NM_016504 51264 Hs.7736 NM_016504 ENSG00000108826 MRPL27 L27mt mitochondrial ribosomal protein L27 protein-coding 177.833-52 chrX 88638956 88639490 + 0.833333 NA Intergenic Intergenic -108002 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 269.5-2 chr10 24339064 24339532 + 0.833333 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) 63613 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 205.5-12 chr17 81554195 81554545 + 0.833333 NA Intergenic Intergenic -2017 NM_025161 80233 Hs.313905 NM_025161 ENSG00000185504 FAAP100 C17orf70 FA core complex associated protein 100 protein-coding 153.667-23 chr14 72004063 72004391 + 0.833333 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 70700 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 127.167-10 chr1 239543287 239543458 + 0.833333 NA intron (NM_001347716, intron 2 of 7) intron (NM_001347716, intron 2 of 7) -85701 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 230-19 chr20 42120868 42121573 + 0.833333 NA intron (NM_133170, intron 20 of 31) intron (NM_133170, intron 20 of 31) -502843 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 189-41 chr5 122724204 122724603 + 0.833333 NA intron (NR_109881, intron 3 of 11) intron (NR_109881, intron 3 of 11) 6157 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 323.333 chr1 238940596 238941126 + 0.833333 NA Intergenic L1MCa|LINE|L1 -445707 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 193.5 chr1 18130196 18130583 + 0.833333 NA intron (NM_032880, intron 1 of 9) intron (NM_032880, intron 1 of 9) 22591 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 159.333-14 chr10 93955412 93955824 + 0.833333 NA Intergenic Intergenic 6297 NR_002319 266971 Hs.149255 NR_002319 ENSG00000180764 PIPSL PIP5K1L1|PIP5K1P3|PSMD4P2|bA429H9.1 PIP5K1A and PSMD4 like (pseudogene) pseudo 164.5-8 chr10 107475145 107475576 + 0.833333 NA Intergenic Intergenic -310654 NM_001206569 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 187.167-9 chr14 21576510 21576889 + 0.833333 NA Intergenic Intergenic -5955 NM_001005465 26533 Hs.554581 NM_001005465 ENSG00000169208 OR10G3 OR14-40 olfactory receptor family 10 subfamily G member 3 protein-coding 155.167-10 chr12 53070552 53070760 + 0.833333 NA intron (NM_032840, intron 6 of 10) MIRb|SINE|MIR 8734 NM_032840 84926 Hs.343334 NM_032840 ENSG00000167778 SPRYD3 - SPRY domain containing 3 protein-coding 166.333-86 chr9 99659479 99659769 + 0.833333 NA intron (NR_109802, intron 3 of 6) intron (NR_109802, intron 3 of 6) 160265 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 213.833-9 chr12 92561185 92561449 + 0.833333 NA Intergenic MSTB|LTR|ERVL-MaLR 94638 NR_144532 100507616 Hs.339918 NR_144532 LINC02397 - long intergenic non-protein coding RNA 2397 ncRNA 215.167-28 chr7 53680440 53680922 + 0.833333 NA intron (NR_038371, intron 5 of 5) L1PA15|LINE|L1 131250 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 143.5-81 chr7 114848155 114848494 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR -73830 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 134.5-12 chr10 32128787 32129025 + 0.833333 NA Intergenic Intergenic -72481 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 245.167-12 chr5 19092163 19092604 + 0.833333 NA Intergenic Intergenic 793889 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 142.167-18 chr12 118269733 118270045 + 0.833333 NA intron (NM_001346490, intron 1 of 21) intron (NM_001346490, intron 1 of 21) -79354 NM_001346495 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 176.833-37 chr9 23081973 23082340 + 0.833333 NA Intergenic Intergenic 435956 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 160.333-6 chr10 66280293 66280626 + 0.833333 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) -645577 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 182.333-26 chr17 59855601 59856015 + 0.833333 NA Intergenic Intergenic 14542 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 240-12 chr17 52415773 52416173 + 0.833333 NA intron (NR_146898, intron 1 of 3) intron (NR_146898, intron 1 of 3) 25451 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 234.333-11 chr14 24540718 24541148 + 0.833333 NA Intergenic L1PA13|LINE|L1 -32668 NM_001308083 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 144.5-89 chr8 119194510 119194796 + 0.833333 NA Intergenic Intergenic -13710 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 167.5-27 chr17 6266938 6267222 + 0.833333 NA Intergenic Intergenic 168041 NM_001033054 23746 Hs.279887 NM_014336 ENSG00000129221 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein like 1 protein-coding 188.667-10 chr11 23069974 23070333 + 0.833333 NA Intergenic THE1C|LTR|ERVL-MaLR -209679 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 289.5-4 chr2 28324830 28325484 + 0.833333 NA intron (NR_137438, intron 12 of 12) intron (NR_137438, intron 12 of 12) -14698 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 220.833-11 chr3 111294106 111294415 + 0.833333 NA Intergenic L1MA3|LINE|L1 222444 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 214.833-9 chr14 81218133 81218511 + 0.833333 NA intron (NM_201595, intron 1 of 8) intron (NM_201595, intron 1 of 8) 2637 NM_001278940 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 249.5-3 chr1 113545874 113546233 + 0.833333 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 155538 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 133-74 chr5 127251664 127251874 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -38995 NM_001308119 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 159.833-29 chr2 123280401 123280625 + 0.833333 NA Intergenic Intergenic -207032 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 149.833-22 chr2 223220544 223220823 + 0.833333 NA Intergenic Intergenic 168753 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 156.833-24 chr18 43850450 43850723 + 0.833333 NA Intergenic Intergenic -573096 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 204.333-11 chr11 28264818 28265235 + 0.833333 NA intron (NM_001113528, intron 4 of 6) intron (NM_001113528, intron 4 of 6) 156638 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 193.667-19 chr16 23876461 23877033 + 0.833333 NA intron (NM_002738, intron 2 of 16) L3|LINE|CR1 40764 NM_002738 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 146.333-24 chr12 77200046 77200295 + 0.833333 NA Intergenic FRAM|SINE|Alu -134601 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 362.167-8 chr7 3252988 3253875 + 0.833333 NA Intergenic L1PA16|LINE|L1 -47821 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 163.333-45 chr2 180501121 180501471 + 0.833333 NA Intergenic L1M5|LINE|L1 -190808 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 138.833-13 chr11 85594171 85594587 + 0.833333 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 32891 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 211.167-31 chr7 24942078 24942564 + 0.833333 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) 37857 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 170-24 chr15 91063645 91063890 + 0.833333 NA Intergenic Intergenic -35821 NM_001323031 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 170-33 chr18 43411035 43411323 + 0.833333 NA Intergenic L1ME1|LINE|L1 -133689 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 285-8 chr7 89987115 89987495 + 0.833333 NA intron (NR_110029, intron 2 of 2) AluSq2|SINE|Alu -132095 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 179-50 chr7 111113967 111114485 + 0.833333 NA intron (NM_001099658, intron 2 of 2) intron (NM_001099658, intron 2 of 2) 23099 NM_018334 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 219.5-30 chr4 73209486 73210141 + 0.833333 NA intron (NM_032217, intron 1 of 33) L1MEc|LINE|L1 13244 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 133-46 chr2 103342157 103342483 + 0.833333 NA Intergenic AluY|SINE|Alu -357891 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 206.667-4 chr1 206014852 206015212 + 0.833333 NA intron (NM_148964, intron 5 of 7) intron (NM_148964, intron 5 of 7) 8863 NM_001910 1510 Hs.644082 NM_001910 ENSG00000196188 CTSE CATE cathepsin E protein-coding 120.833-59 chr5 152103340 152103694 + 0.833333 NA intron (NR_109876, intron 1 of 2) L1ME4b|LINE|L1 144619 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 124.5-41 chr21 29345901 29346142 + 0.833333 NA 3' UTR (NM_001186, exon 5 of 5) 3' UTR (NM_001186, exon 5 of 5) -26480 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 147.333-4 chr1 119755976 119756364 + 0.833333 NA intron (NM_005518, intron 5 of 9) L1ME4a|LINE|L1 12762 NM_001166107 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 176.667-10 chr10 23418823 23419350 + 0.833333 NA Intergenic Intergenic -20183 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 163.5-70 chr7 90780072 90780629 + 0.833333 NA intron (NM_012395, intron 3 of 13) L1MC5|LINE|L1 70534 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 149.167-47 chr5 19224452 19224777 + 0.833333 NA Intergenic L1PA16|LINE|L1 661658 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 332.667-3 chr2 118961213 118961855 + 0.833333 NA intron (NM_006770, intron 1 of 16) L1PA10|LINE|L1 19365 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 173.667-54 chr5 93979409 93979804 + 0.833333 NA intron (NR_028080, intron 3 of 8) intron (NR_028080, intron 3 of 8) 132057 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 132.333-43 chr17 59028830 59029137 + 0.833333 NA intron (NR_148346, intron 18 of 23) intron (NR_148346, intron 18 of 23) 77897 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 273.333-11 chr2 119469747 119470608 + 0.833333 NA intron (NM_002980, intron 4 of 12) LTR86C|LTR|ERVL -6277 NR_147846 107105282 Hs.670673 NR_147846 ENSG00000231013 LOC107105282 - uncharacterized LOC107105282 ncRNA 170.167-24 chr17 59325849 59326128 + 0.833333 NA Intergenic MIRb|SINE|MIR -5667 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 162.833-24 chr2 185808233 185808761 + 0.833333 NA exon (NM_173651, exon 17 of 23) exon (NM_173651, exon 17 of 23) -8346 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 117.167-27 chr15 92027496 92027773 + 0.833333 NA intron (NR_135775, intron 2 of 10) L3|LINE|CR1 173330 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 117-64 chr20 60831764 60832139 + 0.833333 NA Intergenic Intergenic -247113 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 160.167-14 chr13 100696949 100697175 + 0.833333 NA Intergenic MER66C|LTR|ERV1 -11263 NR_047687 100885778 Hs.602949 NR_047687 ENSG00000233009 NALCN-AS1 - NALCN antisense RNA 1 ncRNA 142.667-67 chr3 39030541 39031037 + 0.833333 NA intron (NM_001349253, intron 2 of 29) intron (NM_001349253, intron 2 of 29) 21155 NM_001349253 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 218-32 chr4 14400622 14400977 + 0.833333 NA Intergenic Intergenic 288831 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 147.667-24 chr16 21581562 21581807 + 0.833333 NA Intergenic L1M5|LINE|L1 -15537 NM_001288660 51108 Hs.279583 NM_016025 ENSG00000197006 METTL9 CGI-81|DREV|DREV1|PAP1 methyltransferase like 9 protein-coding 122.833-90 chr8 136416996 136417450 + 0.833333 NA Intergenic Intergenic -113575 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 202.333-22 chr2 50471165 50471519 + 0.833333 NA intron (NM_001330093, intron 16 of 22) L1PB3|LINE|L1 -123586 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 183.833-23 chr2 115410284 115410596 + 0.833333 NA intron (NM_001321912, intron 4 of 25) L1PA10|LINE|L1 66625 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 249.5-12 chr2 96302339 96302698 + 0.833333 NA intron (NM_014014, intron 3 of 44) MER21B|LTR|ERVL 3028 NM_014014 23020 Hs.246112 NM_014014 ENSG00000144028 SNRNP200 ASCC3L1|BRR2|HELIC2|RP33|U5-200KD small nuclear ribonucleoprotein U5 subunit 200 protein-coding 255.833-4 chr14 49968438 49969063 + 0.833333 NA Intergenic L1ME3A|LINE|L1 2351 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 185.5-14 chr14 73651518 73651981 + 0.833333 NA intron (NM_031427, intron 1 of 7) AluSz|SINE|Alu 6763 NM_001201366 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 132.333-42 chr17 55426973 55427205 + 0.833333 NA Intergenic Intergenic -5254 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 123.333-37 chr14 71767708 71767895 + 0.833333 NA Intergenic Intergenic -164370 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 160-67 chr8 39087547 39087761 + 0.833333 NA intron (NR_027638, intron 18 of 20) L1ME4c|LINE|L1 -19875 NM_001313994 203102 Hs.521545 NM_145004 ENSG00000197140 ADAM32 - ADAM metallopeptidase domain 32 protein-coding 129.833-8 chr10 55117153 55117465 + 0.833333 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -316018 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 146.167-36 chr2 162224847 162225166 + 0.833333 NA intron (NM_004460, intron 4 of 25) MIR|SINE|MIR 18439 NM_001291807 2191 Hs.654370 NM_004460 ENSG00000078098 FAP DPPIV|FAPA|FAPalpha|SIMP fibroblast activation protein alpha protein-coding 128.5-87 chr9 83951402 83951602 + 0.833333 NA intron (NM_001317997, intron 3 of 4) AluSx|SINE|Alu 5240 NM_032307 84267 Hs.208914 NM_032307 ENSG00000165118 C9orf64 - chromosome 9 open reading frame 64 protein-coding 130.333-34 chr15 54748377 54748898 + 0.833333 NA Intergenic L1MC4|LINE|L1 -308110 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 153-33 chr21 34681714 34682055 + 0.833333 NA intron (NM_053277, intron 1 of 5) MLT1F1|LTR|ERVL-MaLR 12890 NM_053277 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 164.667-47 chr3 82787487 82787814 + 0.833333 NA Intergenic Intergenic 801508 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 248.667-5 chr10 54326729 54327372 + 0.833333 NA intron (NM_001142767, intron 6 of 30) intron (NM_001142767, intron 6 of 30) -159180 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 200.667-33 chr20 55687642 55687998 + 0.833333 NA Intergenic Intergenic -260623 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 231-32 chr8 125153590 125153960 + 0.833333 NA intron (NM_001349486, intron 4 of 7) MIRc|SINE|MIR 61915 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 117-53 chr2 163546953 163547282 + 0.833333 NA Intergenic AluSc|SINE|Alu 188891 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 166.5-20 chr15 60398477 60398785 + 0.833333 NA promoter-TSS (NM_004039) promoter-TSS (NM_004039) -645 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 186.667-39 chr2 126020869 126021219 + 0.833333 NA Intergenic L1MA9|LINE|L1 96941 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 197.833-10 chr17 2778785 2779216 + 0.833333 NA intron (NM_001330058, intron 1 of 24) LTR16E2|LTR|ERVL 2242 NM_001330058 23108 Hs.499659 NM_015085 ENSG00000132359 RAP1GAP2 GARNL4|RAP1GA3 RAP1 GTPase activating protein 2 protein-coding 175.5-54 chr6 48050103 48050483 + 0.833333 NA intron (NM_207499, intron 1 of 2) intron (NM_207499, intron 1 of 2) 18396 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 330.667-5 chr12 50509050 50509615 + 0.833333 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 4347 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 174.333-32 chr20 22340797 22341083 + 0.833333 NA Intergenic FRAM|SINE|Alu -58139 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 202.167-43 chrX 67957969 67958399 + 0.833333 NA Intergenic Intergenic 413561 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 240.5-24 chr8 128266186 128266508 + 0.833333 NA Intergenic MIR|SINE|MIR 116231 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 212.5-18 chr3 81524546 81525080 + 0.833333 NA intron (NM_000158, intron 14 of 15) L1MA3|LINE|L1 236832 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 176-21 chr20 54680744 54681091 + 0.833333 NA Intergenic Intergenic 205324 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 217.167-5 chr12 16589038 16589358 + 0.833333 NA intron (NR_045014, intron 2 of 3) intron (NR_045014, intron 2 of 3) 16181 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 267.833-14 chr8 28521817 28522425 + 0.833333 NA intron (NM_017412, intron 4 of 7) AluSx3|SINE|Alu -16939 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 188-53 chr6 63421966 63422377 + 0.833333 NA Intergenic AluSx|SINE|Alu -102188 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 124.833-5 chr1 217022013 217022258 + 0.833333 NA intron (NM_001243509, intron 1 of 8) intron (NM_001243509, intron 1 of 8) 54857 NM_001243507 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 158.167-4 chr12 26503814 26504077 + 0.833333 NA intron (NM_002223, intron 37 of 56) intron (NM_002223, intron 37 of 56) 308372 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 198.167-40 chr8 142075851 142076359 + 0.833333 NA Intergenic Intergenic -100234 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 128.833-27 chr14 41072658 41072928 + 0.833333 NA intron (NR_109758, intron 3 of 3) intron (NR_109758, intron 3 of 3) 118082 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 273.167-9 chr15 67320139 67320560 + 0.833333 NA intron (NM_001322475, intron 3 of 17) intron (NM_001322475, intron 3 of 17) -65151 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 134.667-50 chr2 95068918 95069191 + 0.833333 NA Intergenic L1ME3G|LINE|L1 43346 NM_002371 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 178.667-13 chr14 26615957 26616330 + 0.833333 NA intron (NR_147061, intron 1 of 6) L1PA16|LINE|L1 17496 NR_147061 102725045 Hs.143441 NR_147061 LINC02588 C14orf22|NOVA1-AS1 long intergenic non-protein coding RNA 2588 ncRNA 123-64 chr3 12670545 12670723 + 0.833333 NA Intergenic L2a|LINE|L2 -6433 NM_002880 5894 Hs.159130 NM_002880 ENSG00000132155 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 157.333-15 chr12 30756944 30757196 + 0.833333 NA intron (NR_135046, intron 1 of 1) intron (NR_135046, intron 1 of 1) 1996 NR_135046 645485 Hs.232332 NR_135046 ENSG00000246331 LOC645485 - uncharacterized LOC645485 ncRNA 151-72 chr7 118501843 118502086 + 0.833333 NA Intergenic Intergenic 277260 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 186.5-58 chr6 56344097 56344349 + 0.833333 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 49905 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 224.667-32 chr8 138410483 138410838 + 0.833333 NA intron (NM_001362965, intron 1 of 19) L1P1|LINE|L1 86601 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 183.667-28 chr16 63257843 63258239 + 0.833333 NA Intergenic L1PA15|LINE|L1 -1221603 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 371.667-3 chr8 131165749 131166804 + 0.833333 NA Intergenic Intergenic -125367 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 144.833 chr1 10085104 10085504 + 0.833333 NA intron (NM_006048, intron 2 of 26) intron (NM_006048, intron 2 of 26) 52346 NM_006048 10277 Hs.593974 NM_006048 ENSG00000130939 UBE4B E4|HDNB1|UBOX3|UFD2|UFD2A ubiquitination factor E4B protein-coding 124.833-2 chr1 97172769 97172996 + 0.833333 NA intron (NM_000110, intron 20 of 22) intron (NM_000110, intron 20 of 22) 76959 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 175.333-42 chr3 186544903 186545121 + 0.833333 NA promoter-TSS (NM_017541) promoter-TSS (NM_017541) -632 NM_017541 1427 Hs.376209 NM_017541 ENSG00000213139 CRYGS CRYG8|CTRCT20 crystallin gamma S protein-coding 240.833-8 chr15 76797442 76797766 + 0.833333 NA intron (NR_148227, intron 7 of 32) L1M4|LINE|L1 64340 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 156.333-65 chr3 123306578 123306801 + 0.833333 NA intron (NM_183357, intron 12 of 20) L1MB7|LINE|L1 104746 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 196.667-17 chr14 82094001 82094346 + 0.833333 NA Intergenic Intergenic -351035 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 173.833-14 chr11 76477545 76477929 + 0.833333 NA intron (NM_001300942, intron 9 of 21) intron (NM_001300942, intron 9 of 21) 32712 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 198-42 chr4 73370707 73371064 + 0.833333 NA Intergenic Tigger4b|DNA|TcMar-Tigger -33402 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 209.667-4 chr1 225349717 225350030 + 0.833333 NA intron (NM_001367479, intron 71 of 85) L1M4c|LINE|L1 78165 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 325.667-6 chr2 115216479 115217006 + 0.833333 NA intron (NM_001321906, intron 2 of 26) AluSx1|SINE|Alu 54587 NM_001321909 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 131.5-83 chr8 99470553 99470841 + 0.833333 NA intron (NM_017890, intron 24 of 61) L1ME1|LINE|L1 66033 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 178-12 chr11 107487489 107487715 + 0.833333 NA Intergenic L1ME4b|LINE|L1 -29756 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 138.667-21 chr12 48674041 48674237 + 0.833333 NA intron (NM_017822, intron 4 of 9) intron (NM_017822, intron 4 of 9) -6546 NR_002951 677794 Hs.683444 NR_002951 ENSG00000207313 SNORA2B ACA2b small nucleolar RNA, H/ACA box 2B snoRNA 281.167-14 chr9 31508989 31509552 + 0.833333 NA Intergenic Intergenic -127780 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 136.167-24 chr16 3210752 3210995 + 0.833333 NA Intergenic Intergenic -4689 NR_002169 26184 Hs.651203 NR_002169 ENSG00000203581 OR1F2P OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91 olfactory receptor family 1 subfamily F member 2 pseudogene pseudo 124.833-4 chr1 213890985 213891196 + 0.833333 NA intron (NR_037850, intron 4 of 5) L1ME1|LINE|L1 -33659 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 182.167-9 chr11 47080478 47080896 + 0.833333 NA intron (NM_001003677, intron 3 of 8) L1ME4b|LINE|L1 96192 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 258-5 chr5 13803577 13804083 + 0.833333 NA intron (NM_001369, intron 47 of 78) Charlie15a|DNA|hAT-Charlie 140650 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 248.667-23 chr8 119318716 119319244 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR -6191 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 157.833-25 chr14 64927810 64928137 + 0.833333 NA intron (NM_001202559, intron 3 of 13) intron (NM_001202559, intron 3 of 13) 13518 NM_001202558 100529261 Hs.325531 NM_001202558 ENSG00000125954 CHURC1-FNTB FNTB|FTase-beta CHURC1-FNTB readthrough protein-coding 152.167-48 chr4 74030540 74030856 + 0.833333 NA Intergenic Intergenic 7991 NM_002090 2921 Hs.89690 NM_002090 ENSG00000163734 CXCL3 CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3 C-X-C motif chemokine ligand 3 protein-coding 149.833-64 chr9 37083567 37083819 + 0.833333 NA intron (NR_036592, intron 1 of 1) intron (NR_036592, intron 1 of 1) 3797 NR_036592 100506710 Hs.446271 NR_036592 ENSG00000281649 EBLN3P EBLN3 endogenous Bornavirus like nucleoprotein 3, pseudogene pseudo 210.333-30 chr5 2873708 2874017 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR -43992 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 198.167-33 chr8 11319290 11319616 + 0.833333 NA intron (NM_015458, intron 8 of 9).2 intron (NM_015458, intron 8 of 9).2 -11533 NM_054028 83650 Hs.458397 NM_054028 ENSG00000177710 SLC35G5 AMAC|AMAC1L2 solute carrier family 35 member G5 protein-coding 230-26 chr7 21872722 21873117 + 0.833333 NA intron (NM_001277115, intron 73 of 81) intron (NM_001277115, intron 73 of 81) 72980 NM_001127370 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 131.167-13 chr11 32687680 32687843 + 0.833333 NA intron (NM_001008391, intron 6 of 17) L1MC4|LINE|L1 103930 NM_001307929 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 158.333-75 chr8 133713529 133713865 + 0.833333 NA Intergenic MIRb|SINE|MIR -29631 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 175.167-12 chr11 61933727 61934119 + 0.833333 NA Intergenic AluSx|SINE|Alu -13639 NM_001271686 5866 Hs.13759 NM_013401 ENSG00000167994 RAB3IL1 GRAB RAB3A interacting protein like 1 protein-coding 140.5-48 chr3 194026101 194026315 + 0.833333 NA intron (NR_136179, intron 1 of 2) MLT1K|LTR|ERVL-MaLR -22549 NR_033944 647323 Hs.652830 NR_033944 ENSG00000214146 LINC02026 - long intergenic non-protein coding RNA 2026 ncRNA 319.167-8 chrX 47933950 47934483 + 0.833333 NA Intergenic L1MB5|LINE|L1 69773 NM_006962 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 201.833-7 chr15 91435218 91435479 + 0.833333 NA Intergenic Intergenic -27991 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 212.5-22 chr5 33567277 33567559 + 0.833333 NA intron (NM_001324512, intron 17 of 21) intron (NM_001324512, intron 17 of 21) 126642 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 172.333-25 chr15 90488642 90488995 + 0.833333 NA intron (NM_003870, intron 33 of 37) intron (NM_003870, intron 33 of 37) -41105 NM_022769 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 113.333-20 chr10 111776185 111776522 + 0.833333 NA Intergenic Intergenic 407412 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 167.5-50 chr5 43845704 43846117 + 0.833333 NA Intergenic Intergenic -242680 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 130.667-39 chr2 56324629 56325173 + 0.833333 NA intron (NM_001348516, intron 2 of 2) L2c|LINE|L2 -139131 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 135.833-41 chr20 36581318 36581510 + 0.833333 NA intron (NM_001199535, intron 2 of 4) intron (NM_001199535, intron 2 of 4) 6860 NM_001199515 60436 Hs.632264 NM_021809 ENSG00000118707 TGIF2 - TGFB induced factor homeobox 2 protein-coding 152.667-61 chr3 166916453 166916792 + 0.833333 NA intron (NR_135545, intron 2 of 2) L1PA14|LINE|L1 17939 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 155.833-68 chr8 99571688 99571928 + 0.833333 NA intron (NM_017890, intron 31 of 61) intron (NM_017890, intron 31 of 61) -34947 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 127.167-28 chr12 130309943 130310154 + 0.833333 NA Intergenic Intergenic -27839 NM_001190971 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 145.333-14 chr10 110043413 110043908 + 0.833333 NA intron (NM_001121, intron 1 of 13) intron (NM_001121, intron 1 of 13) -35279 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 215.333-37 chr5 29950368 29950889 + 0.833333 NA Intergenic Intergenic 70068 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 164.5-29 chr2 34425680 34426229 + 0.833333 NA Intergenic Intergenic -251603 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 270.5-10 chr3 188122228 188122841 + 0.833333 NA Intergenic Intergenic -31364 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 128.5-49 chr22 40101824 40101995 + 0.833333 NA intron (NM_001024843, intron 1 of 23) intron (NM_001024843, intron 1 of 23) 57092 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 181.833-51 chr8 74393323 74393719 + 0.833333 NA intron (NM_001362931, intron 5 of 5) intron (NM_001362931, intron 5 of 5) 43118 NM_001362931 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 115-76 chr7 73896488 73896655 + 0.833333 NA Intergenic Intergenic 35412 NM_182504 135886 Hs.647026 NM_182504 ENSG00000175877 TMEM270 WBSCR28 transmembrane protein 270 protein-coding 152-37 chr4 63514138 63514345 + 0.833333 NA Intergenic L1MCa|LINE|L1 895209 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 152.167-27 chr2 43134349 43134789 + 0.833333 NA Intergenic Intergenic -32124 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 134.5-52 chr3 35465124 35465489 + 0.833333 NA Intergenic L1MCb|LINE|L1 -71283 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 211.667-47 chr9 72282902 72283310 + 0.833333 NA Intergenic Intergenic -22330 NR_110952 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 309-6 chr2 160313487 160313964 + 0.833333 NA intron (NM_002897, intron 3 of 13) intron (NM_002897, intron 3 of 13) -41830 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000285373 LINC02478 - long intergenic non-protein coding RNA 2478 ncRNA 149.667-33 chr18 2425509 2425912 + 0.833333 NA Intergenic Intergenic 145795 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 168.333-19 chr15 70897308 70897621 + 0.833333 NA intron (NM_001363732, intron 4 of 15) intron (NM_001363732, intron 4 of 15) 5021 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 180.667-64 chr7 5435457 5435764 + 0.833333 NA Intergenic Intergenic -6683 NM_001354886 100129484 Hs.147507 NM_001354886 LOC100129484 - uncharacterized LOC100129484 protein-coding 310.333-8 chr3 117854668 117855258 + 0.833333 NA Intergenic Intergenic -164038 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 188.667-49 chr5 105486571 105486990 + 0.833333 NA Intergenic Intergenic 387306 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 200-58 chr6 44546663 44547018 + 0.833333 NA intron (NR_134609, intron 1 of 1) intron (NR_134609, intron 1 of 1) 5041 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 140.333-68 chr5 98624977 98625318 + 0.833333 NA Intergenic AluSx1|SINE|Alu -143485 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 306.833-4 chr4 40841073 40841527 + 0.833333 NA intron (NM_001166051, intron 1 of 6) intron (NM_001166051, intron 1 of 6) 15855 NM_001166052 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 231.333-30 chr6 138514571 138514889 + 0.833333 NA intron (NM_020464, intron 1 of 6) AluJo|SINE|Alu -15236 NM_001144060 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 234.333-17 chr2 19412772 19413085 + 0.833333 NA Intergenic LTR78|LTR|ERV1 -54305 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 171.667-33 chr15 98244677 98245032 + 0.833333 NA Intergenic L1PA15|LINE|L1 86704 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 155.667-2 chr1 87616461 87616771 + 0.833333 NA Intergenic Intergenic -244961 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 228.167-19 chr4 98097705 98098079 + 0.833333 NA intron (NM_174952, intron 5 of 10) L1MA1|LINE|L1 45584 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 127.333-55 chr2 123981536 123981756 + 0.833333 NA Intergenic L1ME3A|LINE|L1 43528 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 116.167-63 chr5 37611638 37611838 + 0.833333 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 223084 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 176.667-38 chr2 147638453 147638749 + 0.833333 NA Intergenic L2c|LINE|L2 -205916 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 144.667-25 chr11 124435324 124435798 + 0.833333 NA Intergenic Intergenic 5524 NM_012378 26493 Hs.351822 NM_012378 ENSG00000197125 OR8B8 TPCR85 olfactory receptor family 8 subfamily B member 8 protein-coding 178.667-73 chr8 141258746 141259117 + 0.833333 NA Intergenic Intergenic -4302 NM_001286646 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 120.333-12 chr1 181073218 181073410 + 0.833333 NA Intergenic Intergenic -15386 NM_016545 51278 Hs.15725 NM_016545 ENSG00000162783 IER5 SBBI48 immediate early response 5 protein-coding 178.333-12 chr12 77112370 77112742 + 0.833333 NA Intergenic HAL1|LINE|L1 -46987 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 131.667-47 chr17 15932370 15932811 + 0.833333 NA Intergenic L1M4|LINE|L1 -12327 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 115.833-54 chr4 164877341 164877545 + 0.833333 NA intron (NM_001297550, intron 1 of 2) intron (NM_001297550, intron 1 of 2) 265 NM_001297550 100506013 Hs.105196 NM_001297550 ENSG00000248329 APELA ELA|Ende|tdl apelin receptor early endogenous ligand protein-coding 150.5-20 chr12 51701399 51701691 + 0.833333 NA intron (NM_001369788, intron 8 of 25) intron (NM_001369788, intron 8 of 25) 110309 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 195-11 chr16 11651629 11652084 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -16599 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 180.833-15 chr15 87409252 87409481 + 0.833333 NA Intergenic Plat_L3|LINE|CR1 -167563 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 181.5-8 chr11 11602139 11602609 + 0.833333 NA intron (NM_001363464, intron 1 of 9) L1PA8A|LINE|L1 19631 NM_198516 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 209.833-21 chr5 39446729 39447028 + 0.833333 NA Intergenic MER104|DNA|TcMar-Tc2 -21645 NM_001244871 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 208.167-30 chr9 24484834 24485173 + 0.833333 NA Intergenic L1ME3B|LINE|L1 60673 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 117.167-73 chr4 105447456 105447666 + 0.833333 NA intron (NM_176869, intron 4 of 11) L1MA7|LINE|L1 26501 NM_176869 27068 Hs.654957 NM_006903 ENSG00000138777 PPA2 HSPC124|SCFAI|SCFI|SID6-306 pyrophosphatase (inorganic) 2 protein-coding 229.667-18 chr2 101205439 101205733 + 0.833333 NA Intergenic Intergenic -47300 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 181.833-36 chr4 93376143 93376561 + 0.833333 NA intron (NM_001286838, intron 7 of 14) L1MC5|LINE|L1 -452401 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 178.333-27 chr2 186119161 186119480 + 0.833333 NA Intergenic Intergenic -33003 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 141.167-28 chr15 74899925 74900219 + 0.833333 NA TTS (NM_001321922) TTS (NM_001321922) 6779 NM_001321923 57184 Hs.367690 NM_020447 ENSG00000178761 FAM219B C15orf17 family with sequence similarity 219 member B protein-coding 229.333-35 chr8 127651847 127652278 + 0.833333 NA Intergenic Intergenic 81905 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 290.833-7 chr8 134102775 134103197 + 0.833333 NA Intergenic L1ME1|LINE|L1 216490 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 301.333-4 chr11 62126747 62127630 + 0.833333 NA intron (NM_001040694, intron 1 of 18) AluSx|SINE|Alu 3177 NM_020238 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 286.667-18 chr9 34823958 34824341 + 0.833333 NA Intergenic Intergenic 14437 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 155.833-51 chr4 83410599 83411193 + 0.833333 NA intron (NM_001297757, intron 16 of 16) AluJb|SINE|Alu 44927 NM_133636 113510 Hs.480101 NM_133636 ENSG00000163312 HELQ HEL308 helicase, POLQ like protein-coding 240.833-13 chr2 48957289 48957621 + 0.833333 NA Intergenic L2a|LINE|L2 -102148 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 126.5-74 chr5 78530257 78530495 + 0.833333 NA intron (NM_005779, intron 3 of 4) intron (NM_005779, intron 3 of 4) 118396 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 172.333-3 chr1 157100600 157100817 + 0.833333 NA promoter-TSS (NM_001004341) promoter-TSS (NM_001004341) -900 NM_001004341 440695 Hs.127138 NM_001004341 ENSG00000253831 ETV3L - ETS variant 3 like protein-coding 124-43 chr17 58390407 58390678 + 0.833333 NA intron (NM_001305544, intron 2 of 9) intron (NM_001305544, intron 2 of 9) 12179 NM_001305545 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 144-71 chr7 104988525 104988764 + 0.833333 NA non-coding (NR_039981, exon 1 of 1) non-coding (NR_039981, exon 1 of 1) 2521 NR_039981 100216546 Hs.369356 NR_039981 LINC01004 - long intergenic non-protein coding RNA 1004 ncRNA 165.5-54 chr6 75307212 75307446 + 0.833333 NA TTS (NM_001289987) TTS (NM_001289987) 22315 NR_040081 100506804 Hs.743708 NR_040081 LOC100506804 - uncharacterized LOC100506804 ncRNA 169.5-23 chr15 57892496 57892839 + 0.833333 NA Intergenic L2a|LINE|L2 121356 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 154-5 chr1 175007224 175007442 + 0.833333 NA intron (NM_001007214, intron 4 of 5) MER58A|DNA|hAT-Charlie 7386 NM_014412 27101 Hs.508524 NM_014412 ENSG00000116161 CACYBP GIG5|PNAS-107|S100A6BP|SIP calcyclin binding protein protein-coding 133.833-68 chr6 131612572 131612871 + 0.833333 NA intron (NM_001270522, intron 10 of 29) intron (NM_001270522, intron 10 of 29) 15521 NM_004830 9439 Hs.29679 NM_004830 ENSG00000112282 MED23 ARC130|CRSP130|CRSP133|CRSP3|DRIP130|MRT18|SUR-2|SUR2 mediator complex subunit 23 protein-coding 139.5-17 chr14 71681301 71681512 + 0.833333 NA intron (NM_001354286, intron 13 of 24) Charlie30a|DNA|hAT-Charlie 95108 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 191-51 chr8 78790603 78790973 + 0.833333 NA intron (NM_001199886, intron 2 of 4) L1M4|LINE|L1 14675 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 236.333-18 chr2 212628979 212629301 + 0.833333 NA Intergenic Intergenic -90338 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 194.5-14 chr2 31962011 31962475 + 0.833333 NA intron (NR_126034, intron 1 of 6) AluJb|SINE|Alu 48421 NM_001137602 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 252.167-11 chr21 16460454 16460836 + 0.833333 NA intron (NR_136550, intron 1 of 3) intron (NR_136550, intron 1 of 3) 40350 NR_136550 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 122.167-34 chr2 17826495 17826771 + 0.833333 NA Intergenic AluSz|SINE|Alu 10173 NM_001105569 343930 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 198.5-5 chr11 34770626 34770903 + 0.833333 NA Intergenic L1PA13|LINE|L1 138198 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 184.333-58 chr7 49804102 49804415 + 0.833333 NA intron (NR_136188, intron 2 of 3) intron (NR_136188, intron 2 of 3) 28925 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 185.833-2 chr1 55064583 55064990 + 0.833333 NA TTS (NR_110451) TTS (NR_110451) 24564 NR_110451 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 208.667-39 chr6 136631459 136631923 + 0.833333 NA intron (NR_125858, intron 1 of 2) MADE1|DNA|TcMar-Mariner 2577 NR_125858 101928461 Hs.666518 NR_125858 LOC101928461 - uncharacterized LOC101928461 ncRNA 192.333-42 chr5 23599316 23599746 + 0.833333 NA Intergenic L1PA8A|LINE|L1 91876 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 308.333-7 chr4 106815691 106816184 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR 220376 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 128.833-23 chr12 56484791 56484995 + 0.833333 NA intron (NM_001280797, intron 1 of 16) L1ME4b|LINE|L1 3268 NM_013267 27165 Hs.212606 NM_013267 ENSG00000135423 GLS2 GA|GLS|LGA|hLGA glutaminase 2 protein-coding 238.167-27 chr8 85333174 85333578 + 0.833333 NA intron (NM_001738, intron 6 of 8) intron (NM_001738, intron 6 of 8) 8338 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 134.5-54 chr3 187174665 187174937 + 0.833333 NA Intergenic AluSx|SINE|Alu -22685 NM_153708 132112 Hs.518480 NM_153708 ENSG00000175077 RTP1 Z3CXXC1 receptor transporter protein 1 protein-coding 113.667-50 chr17 65022160 65022393 + 0.833333 NA intron (NM_006572, intron 2 of 3) Cheshire|DNA|hAT-Charlie 33498 NM_001282425 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 175-50 chr6 17488385 17488842 + 0.833333 NA intron (NM_001363533, intron 4 of 9) intron (NM_001363533, intron 4 of 9) 22652 NR_110855 101928491 Hs.622876 NR_110855 LOC101928491 - uncharacterized LOC101928491 ncRNA 122.333-70 chr3 37136105 37136399 + 0.833333 NA intron (NM_006309, intron 2 of 27) L1MB7|LINE|L1 38330 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 176-4 chr1 171047345 171047758 + 0.833333 NA intron (NM_001163629, intron 20 of 21) L1MA1|LINE|L1 -43354 NM_001319173 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 158.667 chr1 64420984 64421232 + 0.833333 NA Intergenic Intergenic -49021 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 235.667-28 chrX 111044969 111045291 + 0.833333 NA intron (NM_001128166, intron 2 of 15) intron (NM_001128166, intron 2 of 15) -51061 NR_136740 5063 Hs.593599 NM_002578 ENSG00000077264 PAK3 ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|bPAK|beta-PAK p21 (RAC1) activated kinase 3 protein-coding 247.5-12 chr17 54218140 54218593 + 0.833333 NA Intergenic Intergenic 395439 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 159.667-81 chr6 161537339 161537632 + 0.833333 NA intron (NM_004562, intron 9 of 11) AluY|SINE|Alu 66508 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 135-74 chr4 102124795 102125169 + 0.833333 NA Intergenic MIRb|SINE|MIR 199330 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 178.5-16 chr11 82400122 82400350 + 0.833333 NA intron (NR_120571, intron 1 of 7) Tigger1|DNA|TcMar-Tigger 3677 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 226.333-29 chr4 132395802 132396190 + 0.833333 NA Intergenic Intergenic -195093 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 223 chr10 33101063 33101381 + 0.833333 NA intron (NR_160030, intron 1 of 2) intron (NR_160030, intron 1 of 2) 15585 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 121.167-55 chr3 94725395 94725708 + 0.833333 NA Intergenic Intergenic -212712 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 132.667-33 chr14 79644172 79644464 + 0.833333 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 364938 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 206-27 chr4 102818630 102818943 + 0.833333 NA intron (NM_181893, intron 1 of 6) intron (NM_181893, intron 1 of 6) 7074 NM_001300795 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 284.833 chr10 17249267 17249784 + 0.833333 NA Intergenic Intergenic -19540 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 170.667-80 chr8 129411469 129411877 + 0.833333 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 72469 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 123.167-45 chr2 15374334 15374508 + 0.833333 NA intron (NR_052013, intron 31 of 50) Charlie15b|DNA|hAT-Charlie 186913 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 193.333-46 chr5 149045175 149045495 + 0.833333 NA intron (NM_024577, intron 3 of 16) L1ME4a|LINE|L1 17074 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 133.667-23 chr12 30580630 30580839 + 0.833333 NA Intergenic Intergenic 96510 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 188.833-37 chr7 42093674 42094005 + 0.833333 NA intron (NM_000168, intron 3 of 14) intron (NM_000168, intron 3 of 14) 143370 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 168-50 chr4 104700966 104701194 + 0.833333 NA Intergenic L2c|LINE|L2 -206186 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 154.5-3 chr1 221347077 221347407 + 0.833333 NA Intergenic MamTip2|DNA|hAT-Tip100 -10946 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 229.5-12 chr18 35495782 35496266 + 0.833333 NA intron (NM_001098817, intron 1 of 6) L1ME3|LINE|L1 1584 NM_001308064 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 136-53 chr3 185737336 185737509 + 0.833333 NA intron (NR_138486, intron 2 of 15) MIR1_Amn|SINE|MIR 24170 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 196.833 chr1 18863032 18863416 + 0.833333 NA Intergenic Intergenic -3563 NM_152232 80834 Hs.553548 NM_152232 ENSG00000179002 TAS1R2 GPR71|T1R2|TR2 taste 1 receptor member 2 protein-coding 165.833-34 chr2 99919225 99919463 + 0.833333 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 186239 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 215.167-10 chr14 52728272 52728860 + 0.833333 NA TTS (NM_001366414) TTS (NM_001366414) -1600 NM_145251 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 123.833-33 chr2 154207336 154207568 + 0.833333 NA intron (NM_052917, intron 4 of 12) intron (NM_052917, intron 4 of 12) 249986 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 171-44 chr5 37830980 37831315 + 0.833333 NA intron (NM_001278098, intron 1 of 2) intron (NM_001278098, intron 1 of 2) 3675 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 127.167-27 chr12 122007921 122008151 + 0.833333 NA Intergenic AluJb|SINE|Alu -13848 NM_001024808 605 Hs.530970 NM_020993 ENSG00000110987 BCL7A BCL7 BAF chromatin remodeling complex subunit BCL7A protein-coding 254.167-19 chr8 16378580 16378915 + 0.833333 NA Intergenic Intergenic -185956 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 180.5-56 chrX 83620238 83620575 + 0.833333 NA Intergenic L1PREC2|LINE|L1 112116 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 172.667-7 chr1 203402021 203402330 + 0.833333 NA Intergenic L2|LINE|L2 -51053 NR_103757 2331 Hs.519168 NM_002023 ENSG00000122176 FMOD FM|SLRR2E fibromodulin protein-coding 141.833-12 chr13 108698583 108698753 + 0.833333 NA intron (NM_015011, intron 2 of 34) intron (NM_015011, intron 2 of 34) 69057 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 193.667-21 chr17 59840303 59840738 + 0.833333 NA promoter-TSS (NR_029493) promoter-TSS (NR_029493) -746 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 162.667-59 chr4 165818673 165818948 + 0.833333 NA Intergenic AluSx|SINE|Alu -54427 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 317.167-3 chr10 74869042 74869690 + 0.833333 NA intron (NM_001370144, intron 3 of 15) AluSx1|SINE|Alu 42766 NM_012330 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 120-24 chr12 67180098 67180257 + 0.833333 NA Intergenic L1MEd|LINE|L1 -83893 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 221.167-16 chr2 59918877 59919264 + 0.833333 NA Intergenic Intergenic 463966 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 193.833-23 chr20 13479158 13479530 + 0.833333 NA intron (NM_017714, intron 11 of 13) intron (NM_017714, intron 11 of 13) 159588 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 198.667-25 chr18 7593065 7593620 + 0.833333 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 26026 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 125.5-3 chr1 161859723 161860124 + 0.833333 NA intron (NM_007348, intron 12 of 15) intron (NM_007348, intron 12 of 15) 93603 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 135.833-15 chr13 112619874 112620398 + 0.833333 NA Intergenic MER51E|LTR|ERV1 -26908 NM_207440 400165 Hs.591213 NM_207440 ATP11AUN C13orf35|SMABLO1 ATP11A upstream neighbor protein-coding 297-6 chr5 58403596 58404091 + 0.833333 NA Intergenic Intergenic 56243 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 179.167-5 chr10 5098672 5099135 + 0.833333 NA TTS (NM_001253909) TTS (NM_001253909) 4489 NM_001253909 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 264.667-17 chr2 241280212 241280586 + 0.833333 NA intron (NM_005336, intron 1 of 27) intron (NM_005336, intron 1 of 27) -7513 NM_001243900 3069 Hs.471851 NM_005336 ENSG00000115677 HDLBP HBP|PRO2900|VGL high density lipoprotein binding protein protein-coding 141-63 chr4 37277826 37278025 + 0.833333 NA intron (NM_001144990, intron 1 of 6) L1M4a2|LINE|L1 33182 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 181.667-64 chr7 84547811 84548178 + 0.833333 NA intron (NR_110079, intron 1 of 2) intron (NR_110079, intron 1 of 2) 15518 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 139.167-68 chr8 112469379 112469574 + 0.833333 NA intron (NM_052900, intron 31 of 68) MER1B|DNA|hAT-Charlie -174017 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 130.833-15 chr14 46927726 46927922 + 0.833333 NA intron (NM_001113498, intron 9 of 16) intron (NM_001113498, intron 9 of 16) -276043 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 197-32 chr3 46540679 46541110 + 0.833333 NA intron (NM_024512, intron 3 of 8) intron (NM_024512, intron 3 of 8) -16504 NR_073385 83598 Hs.570630 NR_073385 ENSG00000268324 LRRC2-AS1 LUZP3|LUZP3P|LUZPP1 LRRC2 antisense RNA 1 ncRNA 240.833-6 chr12 1427472 1427854 + 0.833333 NA intron (NR_027948, intron 18 of 19) MIRb|SINE|MIR -72828 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 134.667-43 chr18 6139187 6139412 + 0.833333 NA intron (NM_001365769, intron 13 of 16) intron (NM_001365769, intron 13 of 16) -117445 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 179.5-36 chr7 104089259 104089567 + 0.833333 NA Intergenic Intergenic -99755 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 158.5-8 chr1 246319652 246319869 + 0.833333 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 97652 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 175-51 chr6 50769837 50770124 + 0.833333 NA intron (NM_172238, intron 7 of 7) intron (NM_172238, intron 7 of 7) -48891 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 187.667-43 chr5 128133663 128134235 + 0.833333 NA intron (NM_001046, intron 5 of 26) intron (NM_001046, intron 5 of 26) 50183 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 181.667-10 chr13 45135973 45136315 + 0.833333 NA intron (NM_004128, intron 1 of 7) MIR|SINE|MIR 15634 NM_004128 2963 Hs.654582 NM_004128 ENSG00000188342 GTF2F2 BTF4|RAP30|TF2F2|TFIIF general transcription factor IIF subunit 2 protein-coding 141.333-101 chr9 73773336 73773554 + 0.833333 NA Intergenic Intergenic -598086 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 146-3 chr1 110705535 110705922 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR -30788 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 132.5-86 chr6 155412829 155413077 + 0.833333 NA intron (NM_015718, intron 10 of 13) L2a|LINE|L2 42886 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 126.833-65 chr8 43237906 43238175 + 0.833333 NA Intergenic SAR|Satellite|Satellite -54402 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 210-37 chr9 25710795 25711246 + 0.833333 NA Intergenic Intergenic -32162 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 170.5-11 chr10 93588905 93589183 + 0.833333 NA 3' UTR (NM_001195755, exon 3 of 3) 3' UTR (NM_001195755, exon 3 of 3) 12191 NM_006744 5950 Hs.50223 NM_006744 ENSG00000138207 RBP4 MCOPCB10|RDCCAS retinol binding protein 4 protein-coding 144-34 chr2 35800858 35801377 + 0.833333 NA Intergenic Intergenic 329712 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 118.833-24 chr14 67568634 67568948 + 0.833333 NA intron (NM_020715, intron 7 of 28) intron (NM_020715, intron 7 of 28) 31477 NM_004569 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 178.333-55 chr9 81799982 81800231 + 0.833333 NA Intergenic Intergenic 110393 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 174.833-40 chr5 58836966 58837247 + 0.833333 NA intron (NM_138453, intron 4 of 4) L1MA5A|LINE|L1 162792 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 158.167-8 chr13 82326908 82327170 + 0.833333 NA Intergenic HUERS-P3-int|LTR|ERV1 -1100056 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 201-5 chr1 152618357 152618692 + 0.833333 NA Intergenic Intergenic 4579 NM_178431 353142 Hs.553714 NM_178431 ENSG00000185962 LCE3A LEP13 late cornified envelope 3A protein-coding 197.167-46 chr5 105400036 105400558 + 0.833333 NA Intergenic Intergenic 300823 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 211.167-33 chr7 124350160 124350521 + 0.833333 NA intron (NR_110180, intron 1 of 3) intron (NR_110180, intron 1 of 3) 1756 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 133.167-30 chr2 21351682 21351914 + 0.833333 NA Intergenic Intergenic 227812 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 185.5-41 chr6 16625334 16625650 + 0.833333 NA intron (NM_000332, intron 4 of 8) intron (NM_000332, intron 4 of 8) 134692 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 278.833-8 chr5 130374862 130375228 + 0.833333 NA Intergenic Intergenic 470580 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 296.333-12 chr7 12537587 12538021 + 0.833333 NA intron (NR_136263, intron 3 of 3) L1ME3A|LINE|L1 -32916 NR_156701 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 158.833-15 chr12 18611486 18611816 + 0.833333 NA intron (NM_001288774, intron 31 of 32) L2a|LINE|L2 125858 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 142.833-69 chr6 160881360 160881564 + 0.833333 NA Intergenic Intergenic -110265 NM_001301072 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 153.667-41 chr2 153557959 153558170 + 0.833333 NA Intergenic L2c|LINE|L2 -79302 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 190.833-46 chr9 129883195 129883502 + 0.833333 NA Intergenic Intergenic 13743 NR_106914 102466750 NR_106914 ENSG00000276124 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 147.834-2 chr3 6775426 6776006 + 0.833333 NA intron (NR_110125, intron 2 of 3) AluY|SINE|Alu 29733 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 419-5 chr8 79293590 79294344 + 0.833333 NA Intergenic MIRb|SINE|MIR -38221 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 152.5-39 chr3 97711810 97712137 + 0.833333 NA intron (NM_001080448, intron 14 of 17) MIRc|SINE|MIR -52548 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 177.167-23 chr21 14952707 14953006 + 0.833333 NA Intergenic Intergenic -34188 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 115.5-79 chr5 95024881 95025153 + 0.833333 NA intron (NM_024717, intron 1 of 22) L1M3|LINE|L1 56849 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 129.5-9 chr1 184710829 184710999 + 0.833333 NA intron (NM_025191, intron 15 of 19) intron (NM_025191, intron 15 of 19) 43944 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 128.167-80 chr7 107660224 107660396 + 0.833333 NA promoter-TSS (NM_000441) promoter-TSS (NM_000441) -518 NM_000441 5172 Hs.571246 NM_000441 ENSG00000091137 SLC26A4 DFNB4|EVA|PDS|TDH2B solute carrier family 26 member 4 protein-coding 235.167-19 chr4 83972073 83972579 + 0.833333 NA intron (NR_125909, intron 8 of 8) L2a|LINE|L2 326843 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 145-6 chr1 158331291 158331608 + 0.833333 NA promoter-TSS (NM_001764) promoter-TSS (NM_001764) 82 NM_001764 910 Hs.1310 NM_001764 ENSG00000158485 CD1B CD1|CD1A|R1 CD1b molecule protein-coding 121.833-49 chr4 34260677 34260896 + 0.833333 NA intron (NR_147184, intron 1 of 3) MER2|DNA|TcMar-Tigger 8961 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 180.167-9 chr11 58147996 58148373 + 0.833333 NA intron (NM_001005212, intron 2 of 2) intron (NM_001005212, intron 2 of 2) -28740 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 172.667-47 chr22 25489977 25490315 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR 34500 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 253-6 chr11 129666407 129666885 + 0.833333 NA Intergenic L1M5|LINE|L1 -49377 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 211.333-39 chr5 31228664 31228985 + 0.833333 NA intron (NM_001362435, intron 1 of 10) MER1B|DNA|hAT-Charlie 35138 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 232.667-18 chr3 94114645 94115124 + 0.833333 NA intron (NM_022072, intron 5 of 5) L1PA16|LINE|L1 51823 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 132.167-3 chr1 46431317 46431488 + 0.833333 NA Intergenic Intergenic -2425 NR_045483 729041 Hs.170205 NR_045483 FAAHP1 FAAH-OUT|FAAHOUT|LINC00505 fatty acid amide hydrolase pseudogene 1 pseudo 157-67 chr5 44334512 44334713 + 0.833333 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -54120 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 148.167-38 chr2 80985075 80985367 + 0.833333 NA Intergenic LTR8B|LTR|ERV1 481725 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 195.667-29 chr4 53149795 53150191 + 0.833333 NA intron (NM_152540, intron 4 of 8) L1MC3|LINE|L1 216068 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 209.333-30 chr3 88805723 88806235 + 0.833333 NA Intergenic MIR|SINE|MIR -301642 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 176-27 chr3 189627818 189628201 + 0.833333 NA intron (NM_001329964, intron 1 of 13) L2c|LINE|L2 -3380 NM_003722 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 120.833-24 chr19 9991018 9991590 + 0.833333 NA intron (NM_015719, intron 24 of 66) intron (NM_015719, intron 24 of 66) 19200 NM_015719 50509 Hs.235368 NM_015719 ENSG00000080573 COL5A3 - collagen type V alpha 3 chain protein-coding 129.833-69 chr7 139262831 139262997 + 0.833333 NA intron (NM_173569, intron 6 of 17) intron (NM_173569, intron 6 of 17) 31677 NM_173569 254048 Hs.153458 NM_173569 ENSG00000157741 UBN2 - ubinuclein 2 protein-coding 215-16 chr19 36861459 36861741 + 0.833333 NA intron (NM_001242474, intron 3 of 3) AluSc|SINE|Alu 9949 NM_001242475 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 183-14 chr17 73190427 73190735 + 0.833333 NA Intergenic Intergenic -2474 NM_018714 9382 Hs.103555 NM_018714 ENSG00000166685 COG1 CDG2G|LDLB component of oligomeric golgi complex 1 protein-coding 229.5-16 chr3 32519778 32520076 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -13538 NR_106753 102465247 NR_106753 ENSG00000276147 MIR548AY hsa-mir-548ay microRNA 548ay ncRNA 140-73 chr6 133036806 133037073 + 0.833333 NA Intergenic Intergenic -51141 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 236.5-9 chr10 116651553 116652127 + 0.833333 NA Intergenic L1PA16|LINE|L1 18126 NM_001350931 143379 Hs.121347 NM_144661 ENSG00000165863 C10orf82 - chromosome 10 open reading frame 82 protein-coding 171.833-5 chr1 234622456 234622928 + 0.833333 NA Intergenic Tigger2a|DNA|TcMar-Tigger -6619 NR_033927 100302691 Hs.209162 NR_033927 ENSG00000224939 LINC00184 HANC|NCRNA00184 long intergenic non-protein coding RNA 184 ncRNA 139.833-22 chr13 55286199 55286483 + 0.833333 NA Intergenic Intergenic 111887 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 194.333-7 chr11 71493000 71493252 + 0.833333 NA intron (NM_018161, intron 18 of 20) AluSz|SINE|Alu 19623 NR_106812 102466728 NR_106812 ENSG00000278349 MIR6754 hsa-mir-6754 microRNA 6754 ncRNA 235.667-6 chr12 125203555 125203913 + 0.833333 NA intron (NM_001366854, intron 1 of 8) intron (NM_001366854, intron 1 of 8) 17348 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 198-8 chr1 213552836 213553192 + 0.833333 NA Intergenic L1PA15|LINE|L1 -371735 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 115.833-57 chr5 54433655 54433945 + 0.833333 NA Intergenic Intergenic -21899 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 176.333-14 chr11 102396701 102397025 + 0.833333 NA 3' UTR (NM_052932, exon 5 of 5) 3' UTR (NM_052932, exon 5 of 5) 49489 NM_001256163 329 Hs.696238 NM_001166 ENSG00000110330 BIRC2 API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1 baculoviral IAP repeat containing 2 protein-coding 163.333-32 chr17 16627419 16627719 + 0.833333 NA intron (NM_020787, intron 5 of 5) L1MEg|LINE|L1 26281 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 193-19 chr17 57719587 57719900 + 0.833333 NA Intergenic AluJo|SINE|Alu 25556 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 248.167-25 chr7 144035786 144036258 + 0.833333 NA Intergenic MER41A|LTR|ERV1 -14380 NM_012365 393046 Hs.553793 NM_012365 ENSG00000221836 OR2A5 OR2A11P|OR2A26|OR2A8|OR7-138|OR7-141 olfactory receptor family 2 subfamily A member 5 protein-coding 242-5 chr12 42107732 42108425 + 0.833333 NA intron (NM_173601, intron 4 of 7) intron (NM_173601, intron 4 of 7) 36796 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 154.667-74 chr9 96172899 96173337 + 0.833333 NA Intergenic Intergenic -56707 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 185.5-10 chr11 23077277 23077552 + 0.833333 NA Intergenic Intergenic -216940 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 121.833-15 chr12 116981972 116982317 + 0.833333 NA intron (NR_103809, intron 2 of 3) L1MEc|LINE|L1 5193 NR_103809 100506551 Hs.657861 NR_103809 ENSG00000257279 LOC100506551 - uncharacterized LOC100506551 ncRNA 351.5 chr11 89166240 89166966 + 0.833333 NA Intergenic L1M2|LINE|L1 -11272 NM_000372 7299 Hs.503555 NM_000372 ENSG00000077498 TYR ATN|CMM8|OCA1|OCA1A|OCAIA|SHEP3 tyrosinase protein-coding 134.833-7 chr10 43946947 43947215 + 0.833333 NA intron (NR_033846, intron 5 of 7) intron (NR_033846, intron 5 of 7) 34679 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 253.667-14 chr4 96234959 96235342 + 0.833333 NA Intergenic L1MC3|LINE|L1 -75553 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 161.5-47 chr7 89328074 89328366 + 0.833333 NA intron (NM_181646, intron 3 of 3) intron (NM_181646, intron 3 of 3) -532483 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 145.333-87 chr8 99198747 99199062 + 0.833333 NA intron (NM_017890, intron 17 of 61) intron (NM_017890, intron 17 of 61) 185638 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 154-32 chr17 64129072 64129300 + 0.833333 NA intron (NM_001433, intron 1 of 21) intron (NM_001433, intron 1 of 21) 958 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 138.833-41 chr2 162559162 162559503 + 0.833333 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -209604 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 188-30 chr2 144817888 144818133 + 0.833333 NA intron (NR_033870, intron 2 of 4) MLT1J1-int|LTR|ERVL-MaLR 150043 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 193.667 chr1 29692256 29692816 + 0.833333 NA Intergenic L1MCc|LINE|L1 -342422 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 146-21 chr14 75503616 75503941 + 0.833333 NA Intergenic L4_A_Mam|LINE|RTE-X -18691 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 364-3 chr9 94179295 94180109 + 0.833333 NA TTS (NR_029481) TTS (NR_029481) 868 NR_029481 406886 NR_029481 ENSG00000199133 MIRLET7D LET7D|MIRNLET7D|hsa-let-7d|let-7d microRNA let-7d ncRNA 172.5-61 chr8 127209712 127209984 + 0.833333 NA intron (NR_108049, intron 1 of 1) intron (NR_108049, intron 1 of 1) 9420 NR_108049 100507056 Hs.343864 NR_108049 CCAT1 CARLO5|CARLo-5|onco-lncRNA-40 colon cancer associated transcript 1 ncRNA 127.333-83 chr4 20301371 20301577 + 0.833333 NA intron (NM_001289135, intron 4 of 35) intron (NM_001289135, intron 4 of 35) 49569 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 120.667-76 chr3 1666272 1666552 + 0.833333 NA Intergenic L1MB7|LINE|L1 -432391 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 436.666 chr6 117414011 117414903 + 0.833333 NA intron (NM_002944, intron 3 of 42) intron (NM_002944, intron 3 of 42) 11398 NM_002944 6098 Hs.1041 NM_002944 ENSG00000047936 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding 131.667-77 chr3 35903633 35904000 + 0.833333 NA Intergenic Intergenic 159340 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 231.833-15 chr5 98602879 98603430 + 0.833333 NA Intergenic L1PB4|LINE|L1 -165478 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 178.333-30 chr20 17945562 17945793 + 0.833333 NA intron (NM_014426, intron 11 of 12) intron (NM_014426, intron 11 of 12) 17269 NR_003045 692086 Hs.680747 NR_003045 ENSG00000212232 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 180.833-43 chr8 83249432 83249694 + 0.833333 NA Intergenic L1MC1|LINE|L1 -154195 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 129.667-51 chr2 105847194 105847439 + 0.833333 NA intron (NM_003581, intron 2 of 4) intron (NM_003581, intron 2 of 4) -4531 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 201.667-24 chr4 33469618 33469980 + 0.833333 NA Intergenic Intergenic 570094 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 233.333-16 chr15 80702802 80703332 + 0.833333 NA intron (NM_021214, intron 1 of 2) MLT1A1|LTR|ERVL-MaLR 7757 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 247.333-23 chr7 25698189 25698762 + 0.833333 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) -27744 NR_157816 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 218.167-21 chr4 60025343 60025714 + 0.833333 NA Intergenic AluJr|SINE|Alu -897091 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 131.167-46 chr21 14757299 14757462 + 0.833333 NA Intergenic L1MB1|LINE|L1 -114273 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 187.167 chr1 97323743 97324053 + 0.833333 NA TTS (NR_046590) TTS (NR_046590) 227975 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 147.833-38 chr2 154360848 154361123 + 0.833333 NA intron (NM_052917, intron 9 of 12) intron (NM_052917, intron 9 of 12) 96453 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 180.5-19 chr16 85007199 85007608 + 0.833333 NA intron (NM_001145548, intron 1 of 8) AluSx1|SINE|Alu 4132 NM_001145548 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 157.833-57 chr6 61226178 61226472 + 0.833333 NA Intergenic Intergenic -347805 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 137.333-18 chr11 114471803 114472002 + 0.833333 NA Intergenic Intergenic 32435 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 202.333-25 chr20 21087449 21087960 + 0.833333 NA TTS (NR_147212) TTS (NR_147212) 18654 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 121.5-117 chr9 89356352 89356580 + 0.833333 NA intron (NM_001282688, intron 14 of 16) intron (NM_001282688, intron 14 of 16) 37615 NM_001282690 79048 Hs.59804 NM_024077 ENSG00000187742 SECISBP2 SBP2 SECIS binding protein 2 protein-coding 187-8 chr11 6924490 6924933 + 0.833333 NA Intergenic L1MC3|LINE|L1 -1715 NM_013250 7762 Hs.523457 NM_013250 ENSG00000149054 ZNF215 BAZ-2|BAZ2|ZKSCAN11|ZSCAN43 zinc finger protein 215 protein-coding 144-48 chr3 89622125 89622393 + 0.833333 NA Intergenic Intergenic 514638 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 213.167-22 chr5 18943078 18943429 + 0.833333 NA Intergenic Intergenic 943019 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 238.167-26 chr8 74872495 74872849 + 0.833333 NA Intergenic L1MEg|LINE|L1 48138 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 180.167-50 chr6 150744547 150744811 + 0.833333 NA intron (NM_001329803, intron 2 of 13) intron (NM_001329803, intron 2 of 13) 23580 NM_001329801 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 333.833-2 chr10 24873006 24873698 + 0.833333 NA intron (NM_020200, intron 3 of 8) intron (NM_020200, intron 3 of 8) 79254 NM_020200 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 159-2 chr1 55429010 55429262 + 0.833333 NA Intergenic Intergenic 203495 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 169.334-2 chr12 55258014 55258656 + 0.833333 NA Intergenic Intergenic 11047 NM_001005490 254783 Hs.554556 NM_001005490 ENSG00000197706 OR6C74 - olfactory receptor family 6 subfamily C member 74 protein-coding 219.333-18 chr18 27597000 27597361 + 0.833333 NA Intergenic Intergenic -254524 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 181-26 chr16 53988256 53988572 + 0.833333 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) -50979 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 125.834 chr1 114652921 114653507 + 0.833333 NA intron (NM_001256404, intron 2 of 20) AluSz|SINE|Alu 16835 NM_198459 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 197.667-31 chr2 143140525 143140869 + 0.833333 NA intron (NM_018460, intron 1 of 13) (TCTT)n|Simple_repeat|Simple_repeat 11278 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 192.5-18 chr16 7349564 7350025 + 0.833333 NA intron (NM_145893, intron 1 of 13) L2b|LINE|L2 16949 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 283.833-4 chr21 28245454 28245872 + 0.833333 NA Intergenic L1M1|LINE|L1 -16996 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 275.667-6 chr14 72253688 72254307 + 0.833333 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -262823 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 217.5-26 chr2 152490808 152491120 + 0.833333 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 155790 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 156.833-37 chr3 84745908 84746096 + 0.833333 NA intron (NR_033860, intron 11 of 20) intron (NR_033860, intron 11 of 20) 123573 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 172.667-57 chr3 189953924 189954159 + 0.833333 NA Intergenic Intergenic 124119 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 244.167-21 chr7 104681055 104681513 + 0.833333 NA intron (NM_199000, intron 1 of 2) L2a|LINE|L2 122808 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 150.5-70 chr6 95978692 95978907 + 0.833333 NA Intergenic MIR|SINE|MIR -37175 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 205-16 chr19 39147563 39147829 + 0.833333 NA intron (NM_001014834, intron 1 of 7) L1MD1|LINE|L1 21910 NM_001014835 10298 Hs.20447 NM_005884 ENSG00000130669 PAK4 - p21 (RAC1) activated kinase 4 protein-coding 185-5 chr10 6670314 6670640 + 0.833333 NA Intergenic Intergenic 35407 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 132.167-70 chr8 82470551 82470787 + 0.833333 NA Intergenic L1MB5|LINE|L1 -441435 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 226.167 chr1 58146039 58146334 + 0.833333 NA intron (NM_001353980, intron 1 of 5) Tigger2a|DNA|TcMar-Tigger 104317 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 188.667-12 chr11 90399269 90399584 + 0.833333 NA intron (NR_104190, intron 1 of 6) L1MD2|LINE|L1 148194 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 186.5-34 chr2 42944787 42945172 + 0.833333 NA Intergenic LTR33B|LTR|ERVL 94564 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 162.167-26 chr2 219081869 219082198 + 0.833333 NA intron (NM_024782, intron 5 of 7) intron (NM_024782, intron 5 of 7) -21112 NM_002181 3549 Hs.654504 NM_002181 ENSG00000163501 IHH BDA1|HHG2 Indian hedgehog signaling molecule protein-coding 177.5-13 chr11 95765636 95765997 + 0.833333 NA Intergenic L2|LINE|L2 23966 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 150.333-4 chr1 117208157 117208464 + 0.833333 NA intron (NM_024626, intron 1 of 5) L2b|LINE|L2 2617 NR_045604 79679 Hs.546434 NM_024626 ENSG00000134258 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 128.333-34 chr14 52985651 52985966 + 0.833333 NA Intergenic L2|LINE|L2 -34711 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 114-65 chr3 12230569 12230798 + 0.833333 NA Intergenic Intergenic -56802 NM_001354666 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 267.833-5 chr12 32538149 32538743 + 0.833333 NA intron (NM_001304480, intron 1 of 16) intron (NM_001304480, intron 1 of 16) 4153 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 187-48 chr9 28806535 28806974 + 0.833333 NA intron (NM_001354574, intron 2 of 5) L4_B_Mam|LINE|RTE-X 56952 NR_030597 100126310 NR_030597 ENSG00000215966 MIR876 MIRN876|hsa-mir-876|mir-876 microRNA 876 ncRNA 205.333-19 chr18 75910951 75911350 + 0.833333 NA Intergenic Intergenic -198747 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 172.333-73 chr8 79548474 79548790 + 0.833333 NA Intergenic Intergenic -62485 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 296.667-13 chr6 45112538 45113113 + 0.833333 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) 84945 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 208.833-9 chr13 39303022 39303415 + 0.833333 NA Intergenic MIRb|SINE|MIR 264762 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 270.167-5 chr15 81271137 81271473 + 0.833333 NA intron (NM_001352686, intron 5 of 18) (AAAT)n|Simple_repeat|Simple_repeat -25665 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 189.833-15 chr2 21864766 21865047 + 0.833333 NA Intergenic L1M2|LINE|L1 -154254 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 280.667-21 chr5 7445765 7446163 + 0.833333 NA intron (NM_020546, intron 2 of 24) L1MC5a|LINE|L1 49826 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 120.5-42 chr17 67163084 67163245 + 0.833333 NA intron (NM_001330447, intron 15 of 32) MIRb|SINE|MIR -81612 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 130.167-37 chr20 5209059 5209363 + 0.833333 NA Intergenic L1M4|LINE|L1 82203 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 164.833-45 chr7 124556244 124556553 + 0.833333 NA Intergenic Intergenic -204302 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 160-29 chr14 65429271 65429639 + 0.833333 NA intron (NR_038170, intron 1 of 10) MARNA|DNA|TcMar-Mariner 16725 NR_038170 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 282.333-12 chr3 47875478 47876016 + 0.833333 NA exon (NM_001134364, exon 10 of 18) exon (NM_001134364, exon 10 of 18) 26192 NR_031595 100302232 NR_031595 ENSG00000221585 MIR1226 MIRN1226|hsa-mir-1226|mir-1226 microRNA 1226 ncRNA 113.667-48 chr16 63440967 63441289 + 0.833333 NA Intergenic Intergenic -1404690 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 167.833-27 chr2 70832030 70832324 + 0.833333 NA intron (NM_015717, intron 4 of 5) MIR|SINE|MIR 3639 NM_015717 50489 Hs.199731 NM_015717 ENSG00000116031 CD207 CLEC4K CD207 molecule protein-coding 201-38 chr5 114082758 114083145 + 0.833333 NA Intergenic L1MB3|LINE|L1 -279119 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 194-49 chr5 159690180 159690538 + 0.833333 NA Intergenic L1MA1|LINE|L1 181025 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 121-72 chr5 116294613 116294860 + 0.833333 NA Intergenic L1ME4a|LINE|L1 38993 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 153.833-43 chr3 109079591 109080093 + 0.833333 NA intron (NM_014429, intron 8 of 27) L1MEi|LINE|L1 -21614 NR_144461 100506506 Hs.278908 NR_144461 ENSG00000239314 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA 211.333-9 chr10 70635830 70636374 + 0.833333 NA Intergenic L1M4|LINE|L1 -33314 NM_005041 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 205.5-18 chr18 61318537 61318954 + 0.833333 NA Intergenic Intergenic -14685 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 153-57 chr8 137147625 137147920 + 0.833333 NA Intergenic L2a|LINE|L2 265816 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 196.667-7 chr10 106264533 106264889 + 0.833333 NA Intergenic L1MC1|LINE|L1 124546 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 127.833-19 chr13 42312145 42312321 + 0.833333 NA intron (NM_016248, intron 9 of 12) intron (NM_016248, intron 9 of 12) 40081 NM_016248 11215 Hs.105105 NM_016248 ENSG00000023516 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A-kinase anchoring protein 11 protein-coding 139.167-37 chr2 77583725 77584049 + 0.833333 NA Intergenic L1MA9|LINE|L1 -61454 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 153.5-9 chr10 61960549 61960892 + 0.833333 NA intron (NM_032199, intron 3 of 9) intron (NM_032199, intron 3 of 9) 59021 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 256-19 chr9 36361345 36361764 + 0.833333 NA intron (NM_194328, intron 4 of 11) Kanga1b|DNA|TcMar-Tc2 38715 NM_022781 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 212.667-30 chr4 77059107 77059562 + 0.833333 NA intron (NM_001348134, intron 1 of 5) intron (NM_001348134, intron 1 of 5) 15576 NM_001348133 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 251.167-10 chr20 53672723 53673142 + 0.833333 NA Intergenic Intergenic 64578 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 178.167-40 chr6 60708543 60708790 + 0.833333 NA Intergenic Intergenic -865464 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 138-22 chr12 8102501 8102719 + 0.833333 NA Intergenic L1MA9|LINE|L1 20336 NM_015509 25977 Hs.555927 NM_015509 ENSG00000089818 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 138.833-12 chr10 109145440 109145751 + 0.833333 NA Intergenic Intergenic 777651 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 134.167-66 chr5 33194185 33194467 + 0.833333 NA Intergenic Intergenic -35409 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 164.333-84 chr8 88572455 88572782 + 0.833333 NA Intergenic Intergenic -245135 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 124.833-64 chr4 31627019 31627308 + 0.833333 NA Intergenic Intergenic 120619 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 239.667-21 chr22 27173801 27174114 + 0.833333 NA Intergenic MIRc|SINE|MIR -13559 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 238.833-4 chr17 76230147 76230465 + 0.833333 NA intron (NM_052916, intron 1 of 18) intron (NM_052916, intron 1 of 18) 10187 NM_052916 114804 Hs.500643 NM_052916 ENSG00000141576 RNF157 - ring finger protein 157 protein-coding 172.333-44 chr20 33207493 33207723 + 0.833333 NA intron (NR_026760, intron 7 of 8) intron (NR_026760, intron 7 of 8) -9702 NM_001042439 128861 Hs.360989 NM_178466 ENSG00000131059 BPIFA3 C20orf71|SPLUNC3 BPI fold containing family A member 3 protein-coding 165.5-63 chr9 15677122 15677336 + 0.833333 NA intron (NM_001355547, intron 8 of 24) HAL1|LINE|L1 113251 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 123.5-8 chr1 195691042 195691209 + 0.833333 NA Intergenic L1M4|LINE|L1 397590 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 184-44 chr4 172588299 172588678 + 0.833333 NA intron (NM_001034845, intron 5 of 12) AluSz6|SINE|Alu 100429 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 225.333-2 chr1 172264407 172264905 + 0.833333 NA intron (NR_146559, intron 16 of 20) intron (NR_146559, intron 16 of 20) -119821 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 160.667-77 chr8 122282888 122283290 + 0.833333 NA Intergenic L2a|LINE|L2 285555 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 132-76 chr5 143926906 143927220 + 0.833333 NA Intergenic AluSc|SINE|Alu 114902 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 154.5-5 chr10 49356954 49357183 + 0.833333 NA Intergenic L1MB3|LINE|L1 39021 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 167.667-28 chr14 76510980 76511333 + 0.833333 NA Intergenic Intergenic 139809 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 252.5-5 chr12 13805532 13805962 + 0.833333 NA intron (NM_000834, intron 2 of 12) L1MA8|LINE|L1 174609 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 195.5-22 chr2 18249860 18250273 + 0.833333 NA Intergenic MER3|DNA|hAT-Charlie 310587 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 203.833-8 chr15 63410949 63411238 + 0.833333 NA intron (NR_120375, intron 4 of 6) intron (NR_120375, intron 4 of 6) 20863 NR_120375 102723344 Hs.569500 NR_120375 LINC02568 - long intergenic non-protein coding RNA 2568 ncRNA 157-70 chr6 68113571 68113820 + 0.833333 NA Intergenic Intergenic 58344 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 287.667-8 chr21 44833519 44834045 + 0.833333 NA Intergenic Intergenic -15653 NM_001286416 6612 Hs.474005 NM_006936 ENSG00000184900 SUMO3 SMT3A|SMT3H1|SUMO-3|Smt3B small ubiquitin like modifier 3 protein-coding 342.167-3 chr2 150143878 150144748 + 0.833333 NA Intergenic Intergenic 112694 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 155.833-44 chr4 14232532 14232850 + 0.833333 NA Intergenic MIRb|SINE|MIR 120723 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 210-33 chr8 40273418 40273960 + 0.833333 NA Intergenic MER33|DNA|hAT-Charlie 69674 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 114.833-4 chr1 77128369 77128612 + 0.833333 NA intron (NM_005482, intron 9 of 10) intron (NM_005482, intron 9 of 10) 68347 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 205.333-41 chr4 32693821 32694144 + 0.833333 NA Intergenic L1MC4a|LINE|L1 342944 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 200-4 chr10 19459840 19460169 + 0.833333 NA intron (NM_001142308, intron 29 of 39) intron (NM_001142308, intron 29 of 39) 268546 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 173.167-21 chr2 169122211 169122595 + 0.833333 NA Intergenic L1M2|LINE|L1 41296 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 218.333-18 chr19 57749155 57749470 + 0.833333 NA intron (NR_145326, intron 1 of 3) intron (NR_145326, intron 1 of 3) 2497 NR_145326 284309 Hs.720254 NM_173632 ENSG00000152443 ZNF776 - zinc finger protein 776 protein-coding 200-12 chr12 49841110 49841398 + 0.833333 NA TTS (NR_027499) TTS (NR_027499) 1852 NM_181708 144233 Hs.142736 NM_181708 ENSG00000186666 BCDIN3D - BCDIN3 domain containing RNA methyltransferase protein-coding 185.667-50 chr7 3747779 3748228 + 0.833333 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -381682 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 124.167-5 chr1 213128142 213128352 + 0.833333 NA intron (NM_001349669, intron 7 of 14) (AATGTAAAAC)n|Simple_repeat|Simple_repeat 77006 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 226.167-9 chr14 51785138 51785466 + 0.833333 NA Intergenic Intergenic 68019 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 142.833-27 chr16 82611447 82611853 + 0.833333 NA Intergenic L1MA9|LINE|L1 -15319 NM_001220488 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 150.5-41 chr2 82133907 82134391 + 0.833333 NA Intergenic AluSp|SINE|Alu -667203 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 202.333-19 chr18 2983999 2984547 + 0.833333 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) 27674 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 202.833-5 chr11 25554669 25554948 + 0.833333 NA Intergenic Intergenic -634315 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 273.333-17 chr4 61188557 61189052 + 0.833333 NA Intergenic ORSL|DNA|hAT-Tip100 -12426 NM_001322246 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 228-37 chrUn_KI270438v1 225 702 + 0.833333 NA NA ALR/Alpha|Satellite|centr NA NA 227.333-18 chr2 25806176 25806533 + 0.833333 NA intron (NM_018263, intron 2 of 11) intron (NM_018263, intron 2 of 11) -11663 NM_001369347 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 166.667-42 chr5 30157862 30158210 + 0.833333 NA Intergenic Intergenic 277476 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 173.333-44 chr3 110167257 110167570 + 0.833333 NA Intergenic Intergenic 564585 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 151.667-73 chr6 8440912 8441198 + 0.833333 NA intron (NR_038980, intron 2 of 4) MER33|DNA|hAT-Charlie 5432 NR_038980 100506207 Hs.311049 NR_038979 ENSG00000285219 LOC100506207 - uncharacterized LOC100506207 ncRNA 198.333-48 chr8 120579665 120580038 + 0.833333 NA intron (NM_021021, intron 3 of 6) MIR|SINE|MIR 134432 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 198.5-29 chr4 62753812 62754174 + 0.833333 NA Intergenic Intergenic -592228 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 284.167-5 chr14 52079856 52080421 + 0.833333 NA Intergenic Intergenic -11079 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 149.333-48 chr2 55512969 55513403 + 0.833333 NA Intergenic Intergenic -6409 NM_080667 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 131.833 chr1 151381653 151381900 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL -9071 NM_001258288 8991 Hs.632460 NM_003944 ENSG00000143416 SELENBP1 EHMTO|HEL-S-134P|LPSB|MTO|SBP56|SP56|hSBP selenium binding protein 1 protein-coding 153.333-39 chr2 79497334 79497575 + 0.833333 NA intron (NR_110289, intron 4 of 4) intron (NR_110289, intron 4 of 4) 3390 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 156.333 chr1 23034618 23034859 + 0.833333 NA intron (NM_015013, intron 2 of 18) intron (NM_015013, intron 2 of 18) -9567 NR_036057 100422866 NR_036057 ENSG00000263793 MIR3115 mir-3115 microRNA 3115 ncRNA 149-13 chr10 73542370 73542592 + 0.833333 NA intron (NR_135249, intron 7 of 21) AluSz|SINE|Alu 10859 NR_135250 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 245.667-32 chr7 86958747 86959107 + 0.833333 NA intron (NM_001291990, intron 2 of 21) L1M3|LINE|L1 6972 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 234.833-7 chr14 62920907 62921288 + 0.833333 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 124361 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 173.833-55 chr7 37380208 37380489 + 0.833333 NA intron (NM_001206480, intron 1 of 21) L2a|LINE|L2 -26680 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 212.333-10 chr14 51500853 51501281 + 0.833333 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 11939 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 247.333-5 chr11 127303428 127303771 + 0.833333 NA intron (NR_120580, intron 1 of 2) L3|LINE|CR1 32529 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 153.333-56 chr3 181448139 181448522 + 0.833333 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -5844 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 118.5-86 chr6 140018360 140018522 + 0.833333 NA intron (NR_121623, intron 1 of 1) intron (NR_121623, intron 1 of 1) -27180 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 151.833-53 chr7 99403263 99403528 + 0.833333 NA intron (NM_014891, intron 3 of 5) intron (NM_014891, intron 3 of 5) 5202 NM_014891 11333 Hs.632296 NM_014891 ENSG00000106244 PDAP1 HASPP28|PAP|PAP1 PDGFA associated protein 1 protein-coding 154.333-66 chr6 122078790 122078997 + 0.833333 NA Intergenic Intergenic -320658 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 196.5-23 chr3 61629768 61630198 + 0.833333 NA intron (NM_002841, intron 1 of 29) intron (NM_002841, intron 1 of 29) 68412 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 210-35 chr8 135314077 135314500 + 0.833333 NA Intergenic Intergenic 80157 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 166.667-70 chr9 130248478 130248765 + 0.833333 NA Intergenic AluSx3|SINE|Alu 7234 NR_162140 113219459 NR_162140 MIR12126 - microRNA 12126 ncRNA 184.167-20 chr14 87677463 87677713 + 0.833333 NA Intergenic MIR|SINE|MIR -22294 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 224.833-3 chr10 47137053 47137343 + 0.833333 NA Intergenic Intergenic -162999 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 264.166-2 chr2 106934315 106934914 + 0.833333 NA Intergenic L2a|LINE|L2 -47505 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 270.334-5 chr15 76763940 76764525 + 0.833333 NA intron (NR_148227, intron 14 of 32) intron (NR_148227, intron 14 of 32) 97712 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 208.333-4 chr1 233238288 233238709 + 0.833333 NA intron (NM_014801, intron 8 of 33) AluJb|SINE|Alu 57227 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 160.5-20 chr18 6905448 6905802 + 0.833333 NA intron (NM_001010000, intron 15 of 16) L1MD1|LINE|L1 24244 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 151.333-49 chr2 137500275 137500544 + 0.833333 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 427523 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 144.5-31 chr15 67725761 67726008 + 0.833333 NA intron (NM_002757, intron 16 of 20) intron (NM_002757, intron 16 of 20) -99625 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 197.833-16 chr2 64429436 64429761 + 0.833333 NA Intergenic L1MDa|LINE|L1 -24564 NM_014181 29094 Hs.372208 NM_014181 ENSG00000119862 LGALSL GRP|HSPC159 galectin like protein-coding 317.667-9 chr8 122755064 122755525 + 0.833333 NA Intergenic Intergenic -26361 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 143.167-11 chr11 29879813 29880321 + 0.833333 NA Intergenic Intergenic 102326 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 210.667-47 chr5 114740488 114740906 + 0.833333 NA intron (NR_130785, intron 1 of 12) MER3|DNA|hAT-Charlie 32716 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 262.667-33 chr7 71894246 71894586 + 0.833333 NA intron (NM_001363460, intron 4 of 5) AluJr|SINE|Alu 442975 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 131.5-54 chr4 36113098 36113302 + 0.833333 NA intron (NR_146894, intron 26 of 32) intron (NR_146894, intron 26 of 32) 130739 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 200.833-16 chr2 104684252 104684640 + 0.833333 NA Intergenic Intergenic 73273 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 197.5-15 chr11 57742361 57742866 + 0.833333 NA TTS (NM_001145101) TTS (NM_001145101) 1122 NM_170746 280636 Hs.655373 NM_170746 ENSG00000211450 SELENOH C11orf31|C17orf10|SELH selenoprotein H protein-coding 167.667-42 chr2 55785015 55785296 + 0.833333 NA Intergenic AluSz|SINE|Alu -91311 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 159.833-17 chr13 21839755 21840167 + 0.833333 NA Intergenic Intergenic 38199 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 133.333-80 chr3 111130530 111130854 + 0.833333 NA intron (NM_001243288, intron 5 of 8) intron (NM_001243288, intron 5 of 8) 58876 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 135.167-31 chr14 91497548 91497747 + 0.833333 NA intron (NM_001284281, intron 1 of 12) intron (NM_001284281, intron 1 of 12) 12057 NM_001366432 55671 Hs.533887 NM_017936 ENSG00000100796 PPP4R3A FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1 protein phosphatase 4 regulatory subunit 3A protein-coding 117-54 chr2 178117472 178117653 + 0.833333 NA intron (NM_001365578, intron 2 of 9) intron (NM_001365578, intron 2 of 9) 5125 NM_152945 129831 Hs.377257 NM_152945 ENSG00000155636 RBM45 DRB1|RB-1 RNA binding motif protein 45 protein-coding 172.833-43 chr5 33994390 33994717 + 0.833333 NA intron (NR_037951, intron 8 of 8) intron (NR_037951, intron 8 of 8) -9860 NM_001012509 51151 Hs.278962 NM_016180 ENSG00000164175 SLC45A2 1A1|AIM1|MATP|OCA4|SHEP5 solute carrier family 45 member 2 protein-coding 208.833-3 chr1 197630632 197631031 + 0.833333 NA intron (NR_125340, intron 9 of 19) L2a|LINE|L2 144649 NM_001300858 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 216.667-37 chr5 65431125 65431599 + 0.833333 NA intron (NR_135689, intron 7 of 25) intron (NR_135689, intron 7 of 25) 50558 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 204.5-15 chr14 51318385 51318738 + 0.833333 NA intron (NR_145423, intron 1 of 1) intron (NR_145423, intron 1 of 1) 9824 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 263.167-10 chr3 82960300 82961098 + 0.833333 NA Intergenic Intergenic 974557 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 188.833-2 chr1 110814174 110814619 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -56803 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 216.5-14 chr2 103553446 103553754 + 0.833333 NA Intergenic L1M1|LINE|L1 -569171 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 331.833-3 chr12 45357241 45357754 + 0.833333 NA intron (NM_001025356, intron 8 of 19) intron (NM_001025356, intron 8 of 19) 64807 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 199.333-13 chr15 68999544 68999908 + 0.833333 NA intron (NR_033672, intron 2 of 16) AluSq2|SINE|Alu -14969 NM_001184779 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 173-13 chr11 40123275 40123631 + 0.833333 NA intron (NR_047674, intron 1 of 1) L1MA3|LINE|L1 169677 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 183-42 chr4 71166412 71166711 + 0.833333 NA Intergenic Intergenic -20698 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 121.833-40 chr20 45229210 45229626 + 0.833333 NA Intergenic Intergenic 8045 NM_003008 6407 Hs.537218 NM_003008 ENSG00000124157 SEMG2 SGII semenogelin 2 protein-coding 191-43 chr4 28328915 28329267 + 0.833333 NA Intergenic AluSq2|SINE|Alu -490491 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 192.167-18 chr2 18224121 18224555 + 0.833333 NA Intergenic L1M4|LINE|L1 336315 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 288.167-10 chr7 73555974 73556501 + 0.833333 NA intron (NM_001301061, intron 1 of 6) L2b|LINE|L2 999 NR_036682 9275 Hs.647051 NM_001707 ENSG00000106635 BCL7B - BAF chromatin remodeling complex subunit BCL7B protein-coding 187.667-29 chr2 171546034 171546456 + 0.833333 NA intron (NM_001256909, intron 2 of 3) MIRb|SINE|MIR 23771 NM_001127383 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 166.333-39 chr2 102359527 102359773 + 0.833333 NA intron (NM_003855, intron 1 of 10) L1M5|LINE|L1 3367 NM_001282399 8809 Hs.469521 NM_003855 ENSG00000115604 IL18R1 CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP interleukin 18 receptor 1 protein-coding 132.333-31 chr12 68809413 68809647 + 0.833333 NA intron (NM_001145337, intron 2 of 10) intron (NM_001145337, intron 2 of 10) 506 NM_001145337 4193 Hs.484551 NM_002392 ENSG00000135679 MDM2 ACTFS|HDMX|hdm2 MDM2 proto-oncogene protein-coding 186-24 chr2 125183923 125184248 + 0.833333 NA Intergenic Intergenic 933900 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 149.5-13 chr10 106238128 106238456 + 0.833333 NA Intergenic L1MA5A|LINE|L1 98127 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 134-21 chr10 120048567 120048821 + 0.833333 NA Intergenic Intergenic 90181 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 142.333-67 chr3 20543186 20543470 + 0.833333 NA Intergenic Intergenic 200860 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 196.5-16 chr18 58238915 58239301 + 0.833333 NA intron (NM_001144971, intron 3 of 30) intron (NM_001144971, intron 3 of 30) 17537 NM_001144966 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 155.167-3 chr1 171328007 171328231 + 0.833333 NA intron (NM_002022, intron 5 of 9) AluSq2|SINE|Alu -10777 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - DNA topoisomerase I pseudogene 1 pseudo 125.5-50 chr3 110873738 110874129 + 0.833333 NA Intergenic L1MEf|LINE|L1 196026 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 152.833-28 chr2 45739851 45740233 + 0.833333 NA intron (NM_005400, intron 1 of 14) FLAM_A|SINE|Alu 88367 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 263.5-7 chr14 63048839 63049258 + 0.833333 NA Intergenic Intergenic -3590 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 128.333-108 chr6 81704191 81704536 + 0.833333 NA Intergenic Intergenic 48318 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 162.5-15 chr12 26129403 26129681 + 0.833333 NA Intergenic Intergenic -4505 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 211.333-46 chr6 55181449 55181818 + 0.833333 NA intron (NM_001526, intron 2 of 7) MIRc|SINE|MIR 75173 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 199.5-26 chr3 174482714 174482975 + 0.833333 NA Intergenic Intergenic -376490 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 214.833-20 chr6 40999133 40999569 + 0.833333 NA intron (NR_110873, intron 1 of 5) A-rich|Low_complexity|Low_complexity 23929 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 150.833-18 chr17 75222927 75223111 + 0.833333 NA intron (NM_001330472, intron 7 of 17) AluY|SINE|Alu 17340 NM_024844 79902 Hs.362817 NM_024844 ENSG00000125450 NUP85 FROUNT|NPHS17|Nup75 nucleoporin 85 protein-coding 131.833-20 chr15 99894971 99895206 + 0.833333 NA Intergenic Intergenic 88065 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 119.333-81 chr5 28237196 28237567 + 0.833333 NA Intergenic Intergenic 50284 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 225.833-8 chr2 124670416 124670891 + 0.833333 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 645366 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 302.167-6 chr4 56350390 56351164 + 0.833333 NA intron (NM_001286672, intron 10 of 10) intron (NM_001286672, intron 10 of 10) 36714 NM_181806 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 178-55 chr7 39734548 39734942 + 0.833333 NA intron (NR_026999, intron 1 of 11) intron (NR_026999, intron 1 of 11) 1177 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 160.167-53 chr5 131834262 131834606 + 0.833333 NA intron (NM_001303622, intron 11 of 12) L1MA9|LINE|L1 -37417 NM_001008738 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 157.333-39 chr2 101735665 101735971 + 0.833333 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 38111 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 211.167-30 chr6 130444506 130444925 + 0.833333 NA Intergenic Intergenic 7598 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 145.167-3 chr1 93132359 93132622 + 0.833333 NA intron (NM_007358, intron 11 of 14) intron (NM_007358, intron 11 of 14) 47923 NR_030761 50999 Hs.482873 NM_016040 ENSG00000117500 TMED5 CGI-100|p24g2|p28 transmembrane p24 trafficking protein 5 protein-coding 219.5-43 chr8 66674895 66675342 + 0.833333 NA intron (NR_161217, intron 1 of 1) intron (NR_161217, intron 1 of 1) 7522 NR_161217 56260 Hs.661238 NM_019607 ENSG00000213865 C8orf44 - chromosome 8 open reading frame 44 ncRNA 211.167-14 chr19 12599617 12599915 + 0.833333 NA intron (NM_020714, intron 2 of 4) PABL_A-int|LTR|ERV1 11047 NM_020714 57474 Hs.655860 NM_020714 ENSG00000188033 ZNF490 - zinc finger protein 490 protein-coding 129-43 chr2 98251148 98251313 + 0.833333 NA intron (NM_001345864, intron 14 of 21) intron (NM_001345864, intron 14 of 21) -94925 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 168.5-27 chr2 59695339 59695636 + 0.833333 NA Intergenic L1MEd|LINE|L1 477779 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 180.667-44 chr21 29924805 29925326 + 0.833333 NA intron (NM_000830, intron 1 of 16) L4_A_Mam|LINE|RTE-X 14931 NM_001320621 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 159.5-37 chr4 57254321 57254561 + 0.833333 NA Intergenic Intergenic -144056 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 197.167-16 chr16 13624049 13624473 + 0.833333 NA Intergenic Intergenic -295896 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 173.667-37 chr3 42534577 42534881 + 0.833333 NA intron (NM_004624, intron 10 of 12) intron (NM_004624, intron 10 of 12) -2123 NR_046654 100874007 Hs.600642 NR_046654 VIPR1-AS1 - VIPR1 antisense RNA 1 ncRNA 158.5-6 chr1 226714399 226714621 + 0.833333 NA intron (NM_002221, intron 2 of 7) intron (NM_002221, intron 2 of 7) 24665 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 120.5-37 chr15 85081974 85082253 + 0.833333 NA intron (NM_001243137, intron 5 of 21) intron (NM_001243137, intron 5 of 21) 100139 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 136-30 chr18 2217272 2217513 + 0.833333 NA Intergenic L3|LINE|CR1 354113 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 358.333 chr8 81823155 81823836 + 0.833333 NA intron (NM_001348189, intron 6 of 9) intron (NM_001348189, intron 6 of 9) 18690 NM_152836 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 179.833-24 chr4 37031452 37031716 + 0.833333 NA Intergenic Intergenic 29805 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 182.5-33 chr4 121316496 121316914 + 0.833333 NA Intergenic L1MEh|LINE|L1 64313 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 330.5-5 chr7 95431748 95432376 + 0.833333 NA intron (NM_000305, intron 1 of 8) intron (NM_000305, intron 1 of 8) 2966 NM_000305 5445 Hs.514420 NM_000305 ENSG00000105854 PON2 - paraoxonase 2 protein-coding 114-22 chr11 12791965 12792192 + 0.833333 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 117657 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 242.167-9 chr13 60680068 60680683 + 0.833333 NA intron (NR_047003, intron 1 of 4) MER76|LTR|ERVL 7420 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 154-37 chr2 43157578 43157975 + 0.833333 NA Intergenic Intergenic -55331 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 171.333-14 chr10 36121089 36121410 + 0.833333 NA Intergenic L1ME3E|LINE|L1 342947 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 202.333-29 chr3 37013601 37013870 + 0.833333 NA intron (NM_001354621, intron 8 of 16) L2b|LINE|L2 20385 NM_001354627 4292 Hs.195364 NM_000249 ENSG00000076242 MLH1 COCA2|FCC2|HNPCC|HNPCC2|hMLH1 mutL homolog 1 protein-coding 159.167 chr1 145948448 145948713 + 0.833333 NA intron (NM_153713, intron 1 of 5) intron (NM_153713, intron 1 of 5) 9437 NM_153713 128077 Hs.740619 NM_153713 ENSG00000271601 LIX1L - limb and CNS expressed 1 like protein-coding 195.833-32 chr8 109077016 109077326 + 0.833333 NA Intergenic Intergenic -9457 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 180.5-4 chr1 111086740 111086990 + 0.833333 NA Intergenic L1M1|LINE|L1 -52518 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 136.833-15 chr12 59536705 59537107 + 0.833333 NA Intergenic SATR1|Satellite|Satellite -59123 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 280.833-8 chr7 84076289 84076665 + 0.833333 NA intron (NM_006080, intron 4 of 16) intron (NM_006080, intron 4 of 16) 118312 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 339.833-3 chr8 108492182 108492656 + 0.833333 NA Intergenic AluSx3|SINE|Alu 48795 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 185.5 chr1 42343093 42343413 + 0.833333 NA Intergenic AluJb|SINE|Alu -7373 NM_001198850 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 154-82 chr8 113842677 113843012 + 0.833333 NA Intergenic MLT1E3|LTR|ERVL-MaLR -405905 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 119-14 chr10 68041090 68041375 + 0.833333 NA intron (NM_001278186, intron 3 of 22) intron (NM_001278186, intron 3 of 22) -30349 NR_131184 100009667 NR_131184 POU5F1P5 Oct4-pg5 POU class 5 homeobox 1 pseudogene 5 pseudo 176.833-3 chr10 4362112 4362597 + 0.833333 NA Intergenic Intergenic -21892 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 242.667-24 chr7 89581438 89582251 + 0.833333 NA Intergenic Intergenic -537556 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 148.667-51 chr4 53102136 53102336 + 0.833333 NA intron (NM_152540, intron 5 of 8) L1MC3|LINE|L1 239919 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 286.833-5 chr8 118753143 118753787 + 0.833333 NA Intergenic Intergenic -131502 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 197.5-55 chr8 110144559 110144935 + 0.833333 NA Intergenic Intergenic -168976 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 121.5-27 chr12 55251738 55251916 + 0.833333 NA Intergenic L3|LINE|CR1 4539 NM_001005490 254783 Hs.554556 NM_001005490 ENSG00000197706 OR6C74 - olfactory receptor family 6 subfamily C member 74 protein-coding 188.333-10 chr11 108935105 108935408 + 0.833333 NA intron (NM_004398, intron 17 of 17) L2c|LINE|L2 270187 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 248-15 chr3 130782029 130782493 + 0.833333 NA Intergenic L1MA9|LINE|L1 -35432 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 198.167-3 chr10 113144516 113144889 + 0.833333 NA intron (NM_001198528, intron 6 of 14) intron (NM_001198528, intron 6 of 14) 15431 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 218.167-14 chr2 114646478 114646914 + 0.833333 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 185119 NM_001321905 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 149.833-62 chr9 34221011 34221280 + 0.833333 NA intron (NM_001171202, intron 2 of 5) intron (NM_001171202, intron 2 of 5) 42102 NM_016525 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 173.667-62 chr7 92045579 92046101 + 0.833333 NA intron (NM_147185, intron 21 of 49) AluSx|SINE|Alu 88637 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 208.167-21 chr5 61537636 61538131 + 0.833333 NA intron (NM_020928, intron 10 of 13) intron (NM_020928, intron 10 of 13) -99877 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 177.167-19 chr2 227597103 227597359 + 0.833333 NA Intergenic Intergenic 21424 NR_149019 729968 Hs.689550 NR_149019 LOC729968 - spore coat protein SP96 ncRNA 133-3 chr1 40492259 40492503 + 0.833333 NA intron (NM_001320178, intron 5 of 5) L1ME3Cz|LINE|L1 15091 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 293.333-15 chr7 40891801 40892249 + 0.833333 NA Intergenic L1M4c|LINE|L1 87914 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 197.167-9 chr11 78013213 78013611 + 0.833333 NA Intergenic AluSz|SINE|Alu 9864 NM_023930 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 164.333-8 chr10 21901544 21901781 + 0.833333 NA intron (NM_022365, intron 7 of 11) intron (NM_022365, intron 7 of 11) 102068 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 155.833-57 chr5 94313590 94314145 + 0.833333 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -202168 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 186.5-5 chr1 216947841 216948114 + 0.833333 NA intron (NM_001350124, intron 1 of 9) MLT1J2|LTR|ERVL-MaLR -8304 NM_001243512 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 200-19 chr14 59375764 59376093 + 0.833333 NA Intergenic L1MC1|LINE|L1 89452 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 148.833-3 chr10 15959810 15960074 + 0.833333 NA Intergenic Intergenic -99409 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 132.5-88 chr7 19653338 19653575 + 0.833333 NA Intergenic L1PREC2|LINE|L1 51980 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 235.167-25 chr5 65860813 65861360 + 0.833333 NA Intergenic AluJr|SINE|Alu -65468 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 116.667-61 chr2 220688571 220688970 + 0.833333 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -782205 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 128.833-9 chr1 187944044 187944236 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR 500512 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 222-2 chr1 190340148 190340452 + 0.833333 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 135710 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 275-11 chr5 18048841 18049265 + 0.833333 NA Intergenic MIRc|SINE|MIR 241779 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 187.833-26 chr5 16486926 16487259 + 0.833333 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) -21292 NM_033414 90441 Hs.60300 NM_033414 ENSG00000173545 ZNF622 ZPR9 zinc finger protein 622 protein-coding 211.333-53 chrX 101889014 101889425 + 0.833333 NA intron (NM_001282401, intron 6 of 8) intron (NM_001282401, intron 6 of 8) -31642 NR_159738 55998 Hs.307077 NM_032946 ENSG00000126952 NXF5 - nuclear RNA export factor 5 protein-coding 147.167-17 chr11 95617519 95617814 + 0.833333 NA Intergenic L1MEc|LINE|L1 172116 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 294.5-12 chr8 97274031 97274732 + 0.833333 NA 3' UTR (NM_033512, exon 1 of 1) 3' UTR (NM_033512, exon 1 of 1) 3547 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 116.167-59 chr5 17739570 17739756 + 0.833333 NA Intergenic Intergenic -67611 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 162.333-10 chr11 88663002 88663544 + 0.833333 NA intron (NM_001143831, intron 2 of 8) intron (NM_001143831, intron 2 of 8) 158697 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 195.667-21 chr2 14578436 14578837 + 0.833333 NA Intergenic Intergenic -54081 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 205.833-28 chr6 142990702 142991148 + 0.833333 NA intron (NR_038987, intron 2 of 2) MLT1J|LTR|ERVL-MaLR -45749 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 196.667-31 chr2 234859765 234860195 + 0.833333 NA Intergenic Intergenic -92037 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 244-20 chr7 5685923 5686335 + 0.833333 NA intron (NM_207111, intron 13 of 16) AluSx|SINE|Alu -5668 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 118-99 chr5 142466690 142467068 + 0.833333 NA Intergenic Intergenic 141586 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 157.333-5 chr1 213074443 213074702 + 0.833333 NA intron (NR_146210, intron 3 of 14) intron (NR_146210, intron 3 of 14) 23331 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 170.667-17 chr14 47009449 47009799 + 0.833333 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) 333622 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 329-3 chr12 24560316 24560736 + 0.833333 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 1965 NM_001261414 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 207.167-2 chr1 50903611 50903988 + 0.833333 NA intron (NM_007051, intron 1 of 18) intron (NM_007051, intron 1 of 18) 56468 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 166.5-49 chr5 9359180 9359538 + 0.833333 NA intron (NM_003966, intron 3 of 22) MIRb|SINE|MIR -151974 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 115.833-32 chr2 19557994 19558384 + 0.833333 NA Intergenic Intergenic -199566 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 124-35 chr14 62147042 62147357 + 0.833333 NA Intergenic L1PB1|LINE|L1 -7226 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 157.667-53 chr4 105978343 105978658 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR 43978 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 235.667-21 chr5 123101439 123101816 + 0.833333 NA intron (NM_001136239, intron 3 of 7) intron (NM_001136239, intron 3 of 7) -11311 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 142.167-72 chr6 149818812 149819066 + 0.833333 NA 3' UTR (NM_032832, exon 7 of 7) 3' UTR (NM_032832, exon 7 of 7) -44559 NR_045126 100652739 Hs.642734 NR_045126 ENSG00000223701 RAET1E-AS1 RAET1G-AS1 RAET1E antisense RNA 1 ncRNA 124.667-98 chr5 81408609 81408939 + 0.833333 NA Intergenic Intergenic -14640 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 268.667-3 chr12 61155181 61155795 + 0.833333 NA Intergenic Intergenic 1037351 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 152.667-43 chr2 77700339 77700545 + 0.833333 NA Intergenic Intergenic -178009 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 125.5-81 chr8 90539476 90539686 + 0.833333 NA Intergenic Intergenic 66482 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 138.333-93 chr6 68598671 68598909 + 0.833333 NA Intergenic L1MA7|LINE|L1 35534 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 193-29 chr22 26962533 26962880 + 0.833333 NA Intergenic MIRb|SINE|MIR 59414 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 222-3 chr10 9024839 9025127 + 0.833333 NA Intergenic L1ME4b|LINE|L1 126994 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 188.333-35 chr3 36543226 36543631 + 0.833333 NA intron (NM_001292049, intron 8 of 8) intron (NM_001292049, intron 8 of 8) 162941 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 171-22 chr2 81803578 81804157 + 0.833333 NA Intergenic L1MA7|LINE|L1 -336921 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 174.333-15 chr14 52398481 52398805 + 0.833333 NA Intergenic Intergenic 84331 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 180.833-29 chr3 99056893 99057360 + 0.833333 NA Intergenic Intergenic -155431 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 114-30 chr12 24596149 24596367 + 0.833333 NA Intergenic Intergenic -12090 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 116.167-78 chr8 83925428 83925612 + 0.833333 NA Intergenic MER52A|LTR|ERV1 -257267 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 151.5-33 chr2 34894689 34894952 + 0.833333 NA Intergenic L2c|LINE|L2 217263 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 287.333-3 chr14 72760400 72760827 + 0.833333 NA intron (NM_001280544, intron 2 of 9) L1ME1|LINE|L1 132036 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 119.667-47 chr2 153273502 153273698 + 0.833333 NA Intergenic Intergenic 205162 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 298.333-11 chr6 53295493 53296179 + 0.833333 NA intron (NM_001242830, intron 1 of 6) intron (NM_001242830, intron 1 of 6) 18843 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 116.667-71 chr3 5203933 5204087 + 0.833333 NA intron (NM_014674, intron 5 of 11) AluJb|SINE|Alu 16303 NM_014674 9695 Hs.224616 NM_014674 ENSG00000134109 EDEM1 EDEM ER degradation enhancing alpha-mannosidase like protein 1 protein-coding 119.667-105 chrX 65051723 65052074 + 0.833333 NA Intergenic LTR8B|LTR|ERV1 -17157 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 191.167-19 chr3 188583085 188583457 + 0.833333 NA intron (NM_001167672, intron 4 of 9) intron (NM_001167672, intron 4 of 9) -14605 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 157.833-32 chr18 13336399 13336786 + 0.833333 NA intron (NM_181482, intron 2 of 5) L1M7|LINE|L1 58487 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 164.667-63 chr5 163759971 163760288 + 0.833333 NA Intergenic Intergenic 254510 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 207.333-21 chr16 65051031 65051386 + 0.833333 NA intron (NM_001797, intron 2 of 12) intron (NM_001797, intron 2 of 12) 70855 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 203.667-35 chr8 139911273 139911791 + 0.833333 NA intron (NM_001160372, intron 19 of 22) AluSz|SINE|Alu 189003 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 253.667-20 chr8 104856297 104856846 + 0.833333 NA Intergenic L2b|LINE|L2 -267547 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 127.833-45 chr20 37140960 37141217 + 0.833333 NA intron (NM_152503, intron 12 of 24) intron (NM_152503, intron 12 of 24) -37958 NM_001324301 6185 Hs.370895 NM_002951 ENSG00000118705 RPN2 RIBIIR|RPN-II|RPNII|SWP1 ribophorin II protein-coding 123.833-51 chr5 121172807 121173275 + 0.833333 NA Intergenic MIR|SINE|MIR -149509 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 228.5-2 chr1 212816713 212817237 + 0.833333 NA TTS (NM_001042553) TTS (NM_001042553) 25081 NM_001042552 128387 Hs.530538 NM_001042552 ENSG00000203705 TATDN3 - TatD DNase domain containing 3 protein-coding 270.167-2 chr1 210784455 210784977 + 0.833333 NA intron (NM_002238, intron 9 of 10) intron (NM_002238, intron 9 of 10) 348658 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 122.833-31 chr15 52297857 52298140 + 0.833333 NA Intergenic Intergenic -2194 NM_018728 55930 Hs.487036 NM_018728 ENSG00000128833 MYO5C - myosin VC protein-coding 169.333-21 chr13 86043754 86043958 + 0.833333 NA Intergenic L1MA7|LINE|L1 -244437 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 281.333-15 chr9 22602866 22603500 + 0.833333 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -43017 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 193.667-27 chr2 73933623 73933990 + 0.833333 NA intron (NR_134897, intron 2 of 5) L2c|LINE|L2 6926 NR_134896 1716 Hs.469022 NM_001929 ENSG00000114956 DGUOK MTDPS3|NCPH|PEOB4|dGK deoxyguanosine kinase protein-coding 185.5-52 chr8 128410169 128410674 + 0.833333 NA intron (NR_121672, intron 6 of 7) MIR3|SINE|MIR 154258 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 169.833-26 chr5 1876116 1876480 + 0.833333 NA Intergenic CpG 6627 NM_016358 50805 Hs.196927 NM_016358 ENSG00000113430 IRX4 IRXA3 iroquois homeobox 4 protein-coding 170.167-6 chr10 78151448 78151757 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -97023 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 130.833-29 chr2 47859239 47859407 + 0.833333 NA intron (NM_001190274, intron 1 of 22) intron (NM_001190274, intron 1 of 22) 29396 NM_025133 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 128.167-25 chr14 62346746 62346899 + 0.833333 NA Intergenic Intergenic -206849 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 208-25 chr3 94167231 94167709 + 0.833333 NA Intergenic MIRb|SINE|MIR 104409 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 136.167-51 chr3 60670665 60671151 + 0.833333 NA intron (NM_001320900, intron 5 of 9) intron (NM_001320900, intron 5 of 9) -53038 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 159.833-14 chr10 73513675 73513997 + 0.833333 NA intron (NR_146997, intron 18 of 21) AluSx1|SINE|Alu -17812 NM_001142353 5532 Hs.500067 NM_021132 ENSG00000107758 PPP3CB CALNA2|CALNB|CNA2|PP2Bbeta protein phosphatase 3 catalytic subunit beta protein-coding 294.833-3 chr3 3627290 3627868 + 0.833333 NA Intergenic Intergenic -171852 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 242.667-18 chr4 19991836 19992287 + 0.833333 NA Intergenic Intergenic -259844 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 181.167-7 chr14 50981621 50981902 + 0.833333 NA intron (NM_015163, intron 8 of 9) intron (NM_015163, intron 8 of 9) -37278 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 183.333-40 chr4 37792106 37792457 + 0.833333 NA Intergenic THE1B-int|LTR|ERVL-MaLR -34405 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 237.167 chr1 156048745 156049039 + 0.833333 NA intron (NM_001304342, intron 4 of 10) intron (NM_001304342, intron 4 of 10) 4906 NM_001304342 56893 Hs.283739 NM_020131 ENSG00000160803 UBQLN4 A1U|A1Up|C1orf6|CIP75|UBIN ubiquilin 4 protein-coding 152.667-64 chr4 52416129 52416324 + 0.833333 NA Intergenic LTR102_Mam|LTR|ERVL 240313 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 183.667-59 chr5 3288274 3288550 + 0.833333 NA Intergenic Intergenic 110577 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 156.5-78 chr7 81753266 81753604 + 0.833333 NA intron (NM_001010934, intron 4 of 4) intron (NM_001010934, intron 4 of 4) 16612 NM_001010931 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 207.5-29 chr5 77695379 77695942 + 0.833333 NA intron (NM_004607, intron 2 of 3) MARNA|DNA|TcMar-Mariner -56963 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 266.5-13 chr5 3195036 3195590 + 0.833333 NA Intergenic Intergenic 17478 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 121.667-108 chr9 100542355 100542563 + 0.833333 NA intron (NM_001198812, intron 5 of 9) L1MEd|LINE|L1 -35620 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 163.167-33 chr4 179410215 179410453 + 0.833333 NA Intergenic Intergenic -1502398 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 121.333-23 chr12 98492921 98493090 + 0.833333 NA intron (NR_038383, intron 3 of 3) intron (NR_038383, intron 3 of 3) 10850 NR_038383 643770 Hs.129589 NR_038383 ENSG00000245017 LINC02453 - long intergenic non-protein coding RNA 2453 ncRNA 151.333-84 chr8 31649675 31649883 + 0.833333 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 10027 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 135.833-39 chr20 25121040 25121618 + 0.833333 NA Intergenic Intergenic 26664 NR_027093 284798 Hs.334934 NR_027091 ENSG00000230725 LOC284798 - uncharacterized LOC284798 ncRNA 214-28 chr22 45715702 45716183 + 0.833333 NA intron (NM_013236, intron 5 of 11) L1M5|LINE|L1 44108 NM_013236 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 157.667-21 chr13 53023209 53023480 + 0.833333 NA Intergenic Intergenic -5469 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 214.5-19 chr2 39898218 39898703 + 0.833333 NA Intergenic MER21C|LTR|ERVL -19174 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 195.167-2 chr1 208979835 208980244 + 0.833333 NA Intergenic MIR3|SINE|MIR 7585 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 132.333-13 chr10 55385834 55386188 + 0.833333 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -213031 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 152-7 chr1 177958978 177959349 + 0.833333 NA intron (NM_001356500, intron 7 of 24) MIR3|SINE|MIR 10759 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 235.833-19 chr7 42463032 42463525 + 0.833333 NA Intergenic Intergenic -226069 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 312.833 chr1 81904806 81905611 + 0.833333 NA intron (NM_001366002, intron 3 of 20) AluSq|SINE|Alu 102755 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 137.5-52 chr21_GL383578v2_alt 21611 21963 + 0.833333 NA NA L1MA6|LINE|L1 NA NA 183.5-56 chr7 146657956 146658430 + 0.833333 NA Intergenic L3|LINE|CR1 -116078 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 145.667-101 chr8 113290614 113290975 + 0.833333 NA intron (NM_001363185, intron 2 of 66) intron (NM_001363185, intron 2 of 66) 86358 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 225.167 chr1 146002854 146003314 + 0.833333 NA Intergenic AluSx1|SINE|Alu -6505 NM_006472 10628 Hs.533977 NM_006472 ENSG00000265972 TXNIP ARRDC6|EST01027|HHCPA78|THIF|VDUP1 thioredoxin interacting protein protein-coding 188-65 chr8 114970000 114970255 + 0.833333 NA Intergenic Intergenic 697886 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 239.333-19 chr6 79473690 79474023 + 0.833333 NA Intergenic L1M7|LINE|L1 63574 NM_181714 167691 Hs.21945 NM_181714 ENSG00000135338 LCA5 C6orf152 lebercilin LCA5 protein-coding 178.167-21 chr19 34425560 34425930 + 0.833333 NA intron (NM_032346, intron 6 of 6) intron (NM_032346, intron 6 of 6) -2636 NM_005499 10054 Hs.631580 NM_005499 ENSG00000126261 UBA2 ARX|HRIHFB2115|SAE2 ubiquitin like modifier activating enzyme 2 protein-coding 284.5-10 chr4 60372961 60373531 + 0.833333 NA Intergenic L1MB3|LINE|L1 -549373 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 157-31 chr17 22241635 22242132 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 38888 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 136.5-86 chr7 85875991 85876293 + 0.833333 NA Intergenic L1PB1|LINE|L1 455020 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 155.167-35 chr4 72565687 72566045 + 0.833333 NA intron (NM_014243, intron 2 of 21) intron (NM_014243, intron 2 of 21) 3355 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 163.833-41 chr4 52026376 52026703 + 0.833333 NA intron (NM_000232, intron 5 of 5) AluSg|SINE|Alu -6176 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 116-73 chr5 36247289 36247430 + 0.833333 NA 3' UTR (NM_001161429, exon 15 of 15) 3' UTR (NM_001161429, exon 15 of 15) -5080 NM_153013 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 193-34 chr4 30386074 30386477 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -334094 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 193.667-39 chr5 6065398 6065728 + 0.833333 NA Intergenic L1MC1|LINE|L1 271729 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 314.5-4 chr1 225091835 225092496 + 0.833333 NA intron (NM_001367479, intron 21 of 85) L1PA15|LINE|L1 162490 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 194.667-55 chr5 145821423 145821870 + 0.833333 NA intron (NM_205846, intron 2 of 6) intron (NM_205846, intron 2 of 6) 13696 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 121.167-23 chr13 87163889 87164112 + 0.833333 NA Intergenic Intergenic 252080 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 130.167-61 chr5 149368997 149369229 + 0.833333 NA 3' UTR (NM_024028, exon 6 of 6) 3' UTR (NM_024028, exon 6 of 6) 10179 NM_014443 27190 Hs.156979 NM_014443 ENSG00000127743 IL17B IL-17B|IL-20|NIRF|ZCYTO7 interleukin 17B protein-coding 139.333-84 chr5 174842845 174843240 + 0.833333 NA Intergenic Intergenic 91308 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 118.5-16 chr10 112910550 112910825 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR -39560 NM_001198527 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 170-71 chr7 96183822 96184075 + 0.833333 NA intron (NM_001160210, intron 11 of 17) Tigger19b|DNA|TcMar-Tigger 35808 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 155.667-4 chr1 100908959 100909404 + 0.833333 NA intron (NM_133496, intron 3 of 10) intron (NM_133496, intron 3 of 10) 13091 NM_133496 148867 Hs.533903 NM_133496 ENSG00000162695 SLC30A7 ZNT7|ZnT-7|ZnTL2 solute carrier family 30 member 7 protein-coding 144.167-12 chr10 72480640 72480979 + 0.833333 NA intron (NM_001195519, intron 1 of 6) intron (NM_001195519, intron 1 of 6) 43177 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 170.667-14 chr13 91116753 91117084 + 0.833333 NA Intergenic MamTip2|DNA|hAT-Tip100 -27301 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 158.833-29 chr2 125457732 125457969 + 0.833333 NA Intergenic L2c|LINE|L2 660135 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 138.5-76 chr8 18477742 18478053 + 0.833333 NA Intergenic MER5B|DNA|hAT-Charlie 86615 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 219.167-7 chr10 14316827 14317124 + 0.833333 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 13909 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 170.667-45 chr4 30632791 30633050 + 0.833333 NA Intergenic Intergenic -87449 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 235-13 chr15 59052825 59053207 + 0.833333 NA intron (NM_001270529, intron 3 of 13) intron (NM_001270529, intron 3 of 13) -52130 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 249.667-31 chr4 59360795 59361369 + 0.833333 NA Intergenic L1PA13|LINE|L1 347509 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 168.667-87 chr9 33100680 33100907 + 0.833333 NA Intergenic MER41B|LTR|ERV1 -7899 NR_162131 113219452 NR_162131 MIR12117 - microRNA 12117 ncRNA 164-71 chr8 80902553 80902903 + 0.833333 NA Intergenic L1MB5|LINE|L1 -27947 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 170.5-69 chr8 125436864 125437243 + 0.833333 NA 3' UTR (NM_001282985, exon 3 of 3) 3' UTR (NM_001282985, exon 3 of 3) 4844 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 199.167-44 chr8 87042543 87042886 + 0.833333 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 176299 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 339.833-2 chr2 57535173 57535853 + 0.833333 NA Intergenic L1MC2|LINE|L1 -372138 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 230-23 chr4 169194450 169194943 + 0.833333 NA intron (NM_020870, intron 2 of 11) L1ME3A|LINE|L1 76260 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 115.167-91 chr6 37319104 37319306 + 0.833333 NA intron (NR_130108, intron 12 of 12) intron (NR_130108, intron 12 of 12) -34778 NM_003958 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 203-32 chr4 112480890 112481583 + 0.833333 NA Intergenic L1MEc|LINE|L1 -34143 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 181.167-6 chr13 30180211 30180568 + 0.833333 NA Intergenic Intergenic -27315 NR_138041 102157400 Hs.639879 NR_138041 LINC00384 - long intergenic non-protein coding RNA 384 ncRNA 134.667-107 chr8 82329142 82329377 + 0.833333 NA Intergenic (TTTAA)n|Simple_repeat|Simple_repeat -486973 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 147.5-81 chr8 102396277 102396609 + 0.833333 NA intron (NM_001282873, intron 1 of 58) intron (NM_001282873, intron 1 of 58) 16246 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 235.167-28 chr7 8860623 8861021 + 0.833333 NA Intergenic MER124|DNA?|DNA? 427213 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 179.167-19 chr16 4061015 4061340 + 0.833333 NA intron (NM_001116, intron 2 of 10) L1M4a2|LINE|L1 55265 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 132.333-102 chr8 65364532 65364735 + 0.833333 NA Intergenic L1ME2z|LINE|L1 -184293 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 181-37 chr2 205990246 205990512 + 0.833333 NA Intergenic MLT1A1|LTR|ERVL-MaLR 95795 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 185.167-41 chr8 102892850 102893238 + 0.833333 NA intron (NR_126339, intron 2 of 2) AluJo|SINE|Alu 28773 NR_126339 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 254.5-6 chr20 56245767 56246173 + 0.833333 NA Intergenic Intergenic -2762 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 115-84 chr8 100878298 100878451 + 0.833333 NA Intergenic Intergenic 72197 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 122.667-82 chr5 3246481 3246711 + 0.833333 NA Intergenic L1MC1|LINE|L1 68761 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 135.667-68 chr3 9211949 9212262 + 0.833333 NA intron (NM_014850, intron 1 of 21) intron (NM_014850, intron 1 of 21) -4790 NR_103443 100288831 Hs.694646 NR_103443 ENSG00000227929 SRGAP3-AS3 - SRGAP3 antisense RNA 3 ncRNA 284.167-12 chr2 185676453 185677260 + 0.833333 NA Intergenic MER4-int|LTR|ERV1 61863 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 141.333-78 chr5 117770283 117770667 + 0.833333 NA intron (NR_104997, intron 1 of 2) L1PBa|LINE|L1 40114 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 147-51 chr3 60170333 60170662 + 0.833333 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -89588 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 142-13 chr10 33581508 33581713 + 0.833333 NA Intergenic AluSc|SINE|Alu 191070 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 113.833-37 chr2 20858633 20858953 + 0.833333 NA Intergenic L2c|LINE|L2 -35663 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 154.833-49 chr5 61985207 61985539 + 0.833333 NA Intergenic MIRb|SINE|MIR -249675 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 140-10 chr10 71492498 71492703 + 0.833333 NA intron (NM_052836, intron 3 of 12) intron (NM_052836, intron 3 of 12) 19320 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 170.333-75 chr9 22827228 22827617 + 0.833333 NA Intergenic MLT2A1|LTR|ERVL 181222 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 174.833-43 chr6 35104585 35105010 + 0.833333 NA Intergenic L1MDa|LINE|L1 36542 NM_001366330 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 181.667-71 chrX 155251808 155252115 + 0.833333 NA Intergenic L1MEf|LINE|L1 12530 NM_171998 116442 Hs.632832 NM_171998 ENSG00000155961 RAB39B BGMR|MRX72|WSMN|WSN RAB39B, member RAS oncogene family protein-coding 133.833-40 chr2 116871336 116871637 + 0.833333 NA Intergenic L1PA8A|LINE|L1 -943205 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 123.5-44 chr2 54454388 54454642 + 0.833333 NA Intergenic Intergenic -1812 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 132.333-34 chr12 108053970 108054220 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -75193 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 172.5-24 chr16 66170883 66171264 + 0.833333 NA Intergenic Intergenic -195618 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 169-37 chr3 197818006 197818424 + 0.833333 NA intron (NM_001365717, intron 3 of 19) MIRb|SINE|MIR 26961 NR_158582 84859 Hs.518414 NM_032773 ENSG00000186001 LRCH3 - leucine rich repeats and calponin homology domain containing 3 protein-coding 201.833-25 chr8 29839608 29839865 + 0.833333 NA Intergenic Intergenic -11232 NR_125817 101929470 Hs.204721 NR_125817 ENSG00000248964 LOC101929470 - uncharacterized LOC101929470 ncRNA 184.833-13 chr2 72793153 72793753 + 0.833333 NA intron (NR_135774, intron 1 of 19) intron (NR_135774, intron 1 of 19) 32580 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 168.833-16 chr12 78711075 78711315 + 0.833333 NA Intergenic Intergenic -152787 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 120.167-32 chr18 1594268 1594775 + 0.833333 NA Intergenic L1ME1|LINE|L1 -234892 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 209.5-20 chr2 35308451 35308762 + 0.833333 NA Intergenic Intergenic -162799 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 120.167-34 chr2 31392276 31392549 + 0.833333 NA intron (NM_000379, intron 6 of 35) AluSg|SINE|Alu 22330 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 142.167-62 chr5 86530670 86530855 + 0.833333 NA Intergenic Intergenic -87179 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 210.167-18 chr21 31796540 31797200 + 0.833333 NA Intergenic Intergenic -64752 NM_001145444 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 141.5-63 chr3 164281769 164282024 + 0.833333 NA Intergenic L1M1|LINE|L1 -110340 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 134.667-88 chr5 123092551 123092771 + 0.833333 NA intron (NM_001136239, intron 2 of 7) intron (NM_001136239, intron 2 of 7) -2345 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 201-43 chr8 29942976 29943312 + 0.833333 NA intron (NR_024473, intron 2 of 2) intron (NR_024473, intron 2 of 2) 14204 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 131.167-66 chr5 117059711 117059985 + 0.833333 NA Intergenic Intergenic -297639 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 237-4 chr10 61293724 61294152 + 0.833333 NA Intergenic Intergenic -158701 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 175.167-5 chr1 176250417 176250766 + 0.833333 NA Intergenic Intergenic -43305 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 157.833-71 chr9 115299224 115299537 + 0.833333 NA intron (NR_163556, intron 3 of 7) L2c|LINE|L2 157562 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 163.5-15 chr11 100868353 100868698 + 0.833333 NA intron (NM_001367945, intron 6 of 25) MIR|SINE|MIR -65749 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 155-39 chr2 139952743 139953055 + 0.833333 NA Intergenic Intergenic 633786 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 155.167-51 chr9 38185935 38186180 + 0.833333 NA Intergenic Intergenic -116830 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 133.5-3 chr1 64328830 64329111 + 0.833333 NA Intergenic Intergenic 125347 NM_001366234 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 134.833-39 chr3 178582540 178582716 + 0.833333 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 23778 NM_005832 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 136-50 chr3 99709173 99709445 + 0.833333 NA intron (NM_001850, intron 2 of 4) MER5A1|DNA|hAT-Charlie 70715 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 174-19 chr13 56792349 56792603 + 0.833333 NA Intergenic L1MB1|LINE|L1 -348442 NM_001130404 729233 Hs.723090 NM_001130404 ENSG00000204918 PRR20B PRR20|PRR20A|PRR20C|PRR20D|PRR20E proline rich 20B protein-coding 228.833-2 chr10 61958630 61959162 + 0.833333 NA intron (NM_032199, intron 3 of 9) intron (NM_032199, intron 3 of 9) 57197 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 232.5-34 chr7 10969101 10969563 + 0.833333 NA Intergenic Intergenic -4540 NR_033436 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 137.667-31 chr15 53756420 53756705 + 0.833333 NA intron (NR_102334, intron 1 of 19) L3b|LINE|CR1 3101 NM_182758 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 136-92 chrX 55137473 55137749 + 0.833333 NA Intergenic MER91C|DNA|hAT-Tip100 23491 NM_001166703 90736 Hs.415414 NM_138362 ENSG00000182518 FAM104B CXorf44 family with sequence similarity 104 member B protein-coding 145.833-71 chr6 39780725 39780923 + 0.833333 NA Intergenic L1M4a2|LINE|L1 -11552 NM_001201427 23500 Hs.357128 NM_015345 ENSG00000146122 DAAM2 dJ90A20A.1 dishevelled associated activator of morphogenesis 2 protein-coding 175.667-24 chr18 38320589 38320955 + 0.833333 NA Intergenic L1ME3D|LINE|L1 663637 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 248.5-11 chr3 64802927 64803411 + 0.833333 NA intron (NR_038264, intron 2 of 5) intron (NR_038264, intron 2 of 5) -115169 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 144.833-48 chr3 100793196 100793538 + 0.833333 NA intron (NM_001349332, intron 22 of 35) intron (NM_001349332, intron 22 of 35) 83825 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 222-19 chr2 117118380 117118709 + 0.833333 NA Intergenic L1MA3|LINE|L1 -696147 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 164.167-43 chr3 47656551 47656923 + 0.833333 NA intron (NM_003074, intron 21 of 27) AluJb|SINE|Alu 4957 NR_145791 109623484 NR_145791 SNORD146 - small nucleolar RNA, C/D box 146 snoRNA 174.5-54 chr8 121721268 121721710 + 0.833333 NA Intergenic L1MEd|LINE|L1 -80049 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 243-30 chr8 89037403 89037942 + 0.833333 NA Intergenic Intergenic -710189 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 193.5-6 chr10 117523098 117523503 + 0.833333 NA intron (NR_002791, intron 2 of 3) THE1C|LTR|ERVL-MaLR -19145 NM_001165924 2018 Hs.202095 NM_004098 ENSG00000170370 EMX2 - empty spiracles homeobox 2 protein-coding 162.667-2 chr1 19788088 19788376 + 0.833333 NA intron (NM_001349112, intron 1 of 14) intron (NM_001349112, intron 1 of 14) 11117 NM_001349115 255104 Hs.466729 NM_181719 ENSG00000162542 TMCO4 - transmembrane and coiled-coil domains 4 protein-coding 214.666-7 chr6 67684674 67685186 + 0.833333 NA Intergenic MER4B-int|LTR|ERV1 -370421 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 118.667-73 chr22 28417780 28417969 + 0.833333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -41995 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 187-50 chr9 121617245 121617610 + 0.833333 NA intron (NM_032552, intron 1 of 16) intron (NM_032552, intron 1 of 16) 50325 NM_032552 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 198.333-6 chr12 6737975 6738388 + 0.833333 NA Intergenic L1MD2|LINE|L1 13894 NM_001164093 50813 Hs.530823 NM_016319 ENSG00000111652 COPS7A CSN7|CSN7A|SGN7a COP9 signalosome subunit 7A protein-coding 177.5-32 chr18 8465792 8466044 + 0.833333 NA Intergenic MSTB|LTR|ERVL-MaLR -98884 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 159.333-66 chr5 114980217 114980488 + 0.833333 NA Intergenic Intergenic 189556 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 177.167-24 chr3 57104307 57104759 + 0.833333 NA intron (NM_001318864, intron 8 of 13) intron (NM_001318864, intron 8 of 13) -25265 NM_001128615 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 165.5-2 chr1 106897700 106898012 + 0.833333 NA Intergenic L2|LINE|L2 79617 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 140-81 chr8 96983306 96983633 + 0.833333 NA intron (NM_016134, intron 5 of 7) L1MEd|LINE|L1 294459 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 155.167-2 chr1 166519478 166519877 + 0.833333 NA Intergenic Intergenic -29638 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 138.5-24 chr14 31813307 31813473 + 0.833333 NA intron (NM_001201573, intron 5 of 8) intron (NM_001201573, intron 5 of 8) 98821 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 159.667-24 chr11 93357514 93357733 + 0.833333 NA intron (NM_181645, intron 4 of 13) intron (NM_181645, intron 4 of 13) 26906 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 127.667-37 chr2 12614533 12614760 + 0.833333 NA Intergenic MER66B|LTR|ERV1 -102226 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 217-37 chr8 129504272 129504551 + 0.833333 NA intron (NR_130917, intron 1 of 3) L1MDa|LINE|L1 -20269 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 137.833-4 chr10 55995819 55996000 + 0.833333 NA Intergenic L1MEc|LINE|L1 365350 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 186.5-8 chr10 14564907 14565351 + 0.833333 NA intron (NM_001320736, intron 1 of 4) L2a|LINE|L2 6870 NM_001282702 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 190-49 chr4 115700674 115700979 + 0.833333 NA Intergenic L2|LINE|L2 -587206 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 165.5-59 chr8 16339681 16339949 + 0.833333 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -147024 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 213.833-8 chr12 57418766 57419122 + 0.833333 NA intron (NM_001351204, intron 1 of 25) L2c|LINE|L2 12099 NM_001351218 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 152.167-19 chr15 47761198 47761434 + 0.833333 NA intron (NM_001358351, intron 5 of 18) intron (NM_001358351, intron 5 of 18) 42827 NM_153619 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 187.667-37 chr4 119120771 119121118 + 0.833333 NA Intergenic L1ME3E|LINE|L1 -14840 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 195-5 chr10 78476706 78477054 + 0.833333 NA Intergenic Intergenic 209538 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 142.167-31 chr17 65011651 65011850 + 0.833333 NA 3' UTR (NM_001282425, exon 4 of 4) 3' UTR (NM_001282425, exon 4 of 4) -36165 NR_026903 201283 Hs.396447 NM_153032 ENSG00000214174 AMZ2P1 - archaelysin family metallopeptidase 2 pseudogene 1 pseudo 149-36 chr2 67848888 67849144 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR -23454 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 171.333-24 chr15 95968648 95968933 + 0.833333 NA Intergenic Intergenic 159051 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 172.833-53 chr8 106045767 106045980 + 0.833333 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 14630 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 127.167-70 chr5 43901004 43901189 + 0.833333 NA Intergenic L2a|LINE|L2 -297866 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 203.333-39 chr5 42657775 42658057 + 0.833333 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) 92052 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 207.834-11 chr9 30607448 30608111 + 0.833333 NA Intergenic Intergenic -199325 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 183.667-34 chr18 22344418 22344857 + 0.833333 NA Intergenic Intergenic 73278 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 291-10 chr3 109012987 109013488 + 0.833333 NA intron (NM_014429, intron 17 of 27) intron (NM_014429, intron 17 of 27) -59358 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 170.833-27 chr3 121845966 121846358 + 0.833333 NA intron (NM_001320041, intron 2 of 4) intron (NM_001320041, intron 2 of 4) 10953 NM_018456 55840 Hs.477325 NM_018456 ENSG00000145088 EAF2 BM040|TRAITS|U19 ELL associated factor 2 protein-coding 168.833-5 chr10 25903482 25903846 + 0.833333 NA Intergenic L2a|LINE|L2 30046 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 190-47 chr4 64194413 64194720 + 0.833333 NA Intergenic Intergenic 214884 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 113.667-60 chr2 28692548 28692705 + 0.833333 NA Intergenic Intergenic 43579 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 145.5-59 chr5 14862770 14863249 + 0.833333 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 8769 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 217.833-18 chr4 17072053 17072368 + 0.833333 NA Intergenic Intergenic 113847 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 184.5-2 chr1 82711542 82711852 + 0.833333 NA Intergenic Intergenic -191486 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 206.5-5 chr11 115296937 115297391 + 0.833333 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -36413 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 142.833-33 chr18 33138051 33138470 + 0.833333 NA intron (NM_001308126, intron 20 of 23) intron (NM_001308126, intron 20 of 23) 302311 NM_001371121 257.333-30 chr9 106146129 106146540 + 0.833333 NA Intergenic Intergenic 451793 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 238.833-5 chr18 7992290 7992696 + 0.833333 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 374541 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 188.5-48 chr6 56484235 56484637 + 0.833333 NA intron (NM_001144770, intron 80 of 94) intron (NM_001144770, intron 80 of 94) -90308 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 173-44 chr5 123449956 123450234 + 0.833333 NA Intergenic Intergenic -26503 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 134.5-68 chr7 52258652 52258909 + 0.833333 NA Intergenic Intergenic -776853 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 206-18 chr2 99963573 99963871 + 0.833333 NA intron (NM_001025108, intron 6 of 23) L1MDa|LINE|L1 141861 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 177-60 chr6 13215590 13215930 + 0.833333 NA intron (NM_001322308, intron 7 of 13) intron (NM_001322308, intron 7 of 13) 67682 NR_134859 100130357 Hs.484678 NM_001242698 LOC100130357 - uncharacterized LOC100130357 ncRNA 155.667-82 chr8 92945480 92945743 + 0.833333 NA intron (NM_001171798, intron 1 of 4) intron (NM_001171798, intron 1 of 4) 19978 NM_001191036 286144 Hs.440643 NM_001171795 ENSG00000205133 TRIQK C8orf83|PRO0845|UPF0599 triple QxxK/R motif containing protein-coding 115.5-18 chr10 80985648 80985809 + 0.833333 NA Intergenic Intergenic 335931 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 227-20 chr3 192645878 192646427 + 0.833333 NA intron (NM_004113, intron 2 of 5) L2a|LINE|L2 81389 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 175.5-21 chr2 37808077 37808363 + 0.833333 NA Intergenic Intergenic 21491 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 228.667-8 chr11 28602972 28603480 + 0.833333 NA Intergenic Intergenic -125678 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 138.667-113 chr9 71150340 71150743 + 0.833333 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -28920 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 263.5-22 chr8 78660433 78660799 + 0.833333 NA Intergenic L1M4|LINE|L1 -5473 NM_016010 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 160.667 chr1 41263137 41263443 + 0.833333 NA Intergenic AluSx1|SINE|Alu -20984 NM_001350667 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 114.333 chr1 19076130 19076390 + 0.833333 NA intron (NM_020765, intron 105 of 105) intron (NM_020765, intron 105 of 105) -119584 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 180.333-7 chr10 9599209 9599608 + 0.833333 NA Intergenic Intergenic -303815 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 252-22 chr9 27301678 27302181 + 0.833333 NA Intergenic AluSx1|SINE|Alu -4779 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 132.667 chr1 17556483 17556664 + 0.833333 NA intron (NR_137287, intron 1 of 29) intron (NR_137287, intron 1 of 29) 16875 NM_018125 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 157.333-69 chr7 106152804 106153296 + 0.833333 NA Intergenic MER57C2|LTR|ERV1 -40474 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 210-7 chr14 54311620 54312045 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -85036 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 222.334-2 chr2 47209323 47209935 + 0.833333 NA intron (NR_110208, intron 3 of 4) MIRb|SINE|MIR -32693 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 117.167-81 chr6 49590785 49591031 + 0.833333 NA Intergenic Intergenic 40240 NR_146861 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 229.667-35 chr9 32544122 32544590 + 0.833333 NA intron (NM_001195622, intron 1 of 1) intron (NM_001195622, intron 1 of 1) -6788 NM_001349118 100129250 Hs.664395 NM_001349118 ENSG00000235453 SMIM27 C9orf133|TOPORS-AS1 small integral membrane protein 27 protein-coding 159.167-17 chr14 53096358 53096713 + 0.833333 NA intron (NM_030637, intron 2 of 11) intron (NM_030637, intron 2 of 11) 56788 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 260.833-3 chr1 75676982 75677310 + 0.833333 NA Intergenic L1M1|LINE|L1 -47201 NM_001127328 34 Hs.445040 NM_000016 ENSG00000117054 ACADM ACAD1|MCAD|MCADH acyl-CoA dehydrogenase medium chain protein-coding 236.833-21 chr8 136461541 136461877 + 0.833333 NA Intergenic AluSq2|SINE|Alu -69089 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 152.833-27 chr2 10218743 10219022 + 0.833333 NA Intergenic Intergenic -26211 NR_036222 100422929 NR_036222 ENSG00000265418 MIR4261 - microRNA 4261 ncRNA 165.5-28 chr17 51909551 51909975 + 0.833333 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 248951 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 115.667-8 chr1 112519403 112519737 + 0.833333 NA intron (NM_001291880, intron 4 of 4) intron (NM_001291880, intron 4 of 4) 10605 NM_024494 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 149.5-3 chr1 117531677 117532060 + 0.833333 NA Intergenic L1MB7|LINE|L1 73902 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 178.667-23 chr2 33159292 33159649 + 0.833333 NA intron (NM_206943, intron 5 of 33) intron (NM_206943, intron 5 of 33) 24873 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 325.667-3 chr14 83715150 83715615 + 0.833333 NA Intergenic MER58D|DNA|hAT-Charlie 1072750 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 189.833 chr1 37897567 37897966 + 0.833333 NA intron (NR_158630, intron 7 of 24) (ATA)n|Simple_repeat|Simple_repeat 33973 NM_001350227 3633 Hs.449942 NM_005540 ENSG00000204084 INPP5B 5PTase inositol polyphosphate-5-phosphatase B protein-coding 166.167-13 chr14 64284467 64284753 + 0.833333 NA intron (NR_073496, intron 1 of 7) AluSq2|SINE|Alu -1535 NM_001214902 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 178.333-57 chrX 20908853 20909297 + 0.833333 NA Intergenic Intergenic -465343 NM_001168647 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 127.833-63 chr5 154547241 154547434 + 0.833333 NA Intergenic L1PA16|LINE|L1 48735 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 113.667-90 chr4 59293478 59293667 + 0.833333 NA Intergenic Intergenic 279999 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 133.333-24 chr11 92555115 92555382 + 0.833333 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 203152 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 191-10 chr13 20778548 20778821 + 0.833333 NA 3' UTR (NM_022459, exon 23 of 23) 3' UTR (NM_022459, exon 23 of 23) -4723 NM_001318939 221143 Hs.26674 NM_174928 ENSG00000150456 EEF1AKMT1 ESP13|N6AMT2 EEF1A lysine methyltransferase 1 protein-coding 239.833-7 chr11 78916273 78916808 + 0.833333 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) -341676 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 293.333-14 chr7 35723629 35724441 + 0.833333 NA Intergenic Intergenic 7598 NR_108082 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 346.667-10 chrX 100906640 100907111 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR 22042 NM_212559 402415 Hs.364911 NM_212559 ENSG00000182489 XKRX XKR2|XPLAC|XRG2 XK related X-linked protein-coding 208.5-47 chr8 117658543 117659072 + 0.833333 NA Intergenic Intergenic 138094 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 146.5-39 chr18 70939276 70939744 + 0.833333 NA Intergenic Intergenic -288556 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 229.833-16 chr4 187958785 187959233 + 0.833333 NA Intergenic AluSp|SINE|Alu -36762 NM_174900 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 193.333-53 chr8 68082071 68082316 + 0.833333 NA intron (NM_024870, intron 17 of 39) intron (NM_024870, intron 17 of 39) 130147 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 145.5-19 chr14 35508617 35508819 + 0.833333 NA Intergenic AluJr4|SINE|Alu -25446 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 145.333-38 chr2 42588318 42588511 + 0.833333 NA intron (NM_001330443, intron 3 of 16) Charlie2a|DNA|hAT-Charlie 19782 NM_001330444 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 178.5-52 chr3 105683715 105684019 + 0.833333 NA intron (NM_001321789, intron 13 of 17) intron (NM_001321789, intron 13 of 17) 183724 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 138.5-89 chr9 24876476 24876725 + 0.833333 NA Intergenic L1MC1|LINE|L1 -330703 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 182.833-3 chr1 164046561 164046864 + 0.833333 NA Intergenic L1MA5|LINE|L1 -512648 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 179.167-37 chr5 54322453 54322857 + 0.833333 NA intron (NR_126379, intron 1 of 4) intron (NR_126379, intron 1 of 4) 1711 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 204.167-5 chr10 49547796 49548110 + 0.833333 NA Intergenic MER41-int|LTR|ERV1 -8415 NM_001277059 2074 Hs.49063 NM_000124 ENSG00000225830 ERCC6 ARMD5|CKN2|COFS|COFS1|CSB|CSB-PGBD3|POF11|RAD26|UVSS1 ERCC excision repair 6, chromatin remodeling factor protein-coding 151.5-72 chr8 120626599 120626849 + 0.833333 NA intron (NM_021021, intron 3 of 6) Tigger6a|DNA|TcMar-Tigger -134529 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 165.667-80 chrX 77915010 77915677 + 0.833333 NA intron (NM_001282224, intron 1 of 21) intron (NM_001282224, intron 1 of 21) 4650 NM_000052 538 Hs.496414 NM_000052 ENSG00000165240 ATP7A DSMAX|MK|MNK|SMAX3 ATPase copper transporting alpha protein-coding 191.167-40 chrX 93937183 93937627 + 0.833333 NA Intergenic Intergenic 263199 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 161.833-6 chr12 121584822 121585158 + 0.833333 NA Intergenic MIRb|SINE|MIR -3967 NM_032590 84678 Hs.524800 NM_032590 ENSG00000089094 KDM2B CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2 lysine demethylase 2B protein-coding 219.167-8 chr10 72143601 72143953 + 0.833333 NA intron (NM_001369099, intron 6 of 8) L1MEd|LINE|L1 -54745 NM_001134434 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 143.833-42 chr5 133480781 133481111 + 0.833333 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -53240 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 153.167-42 chr5 55258753 55258944 + 0.833333 NA intron (NR_144323, intron 26 of 26) AluJr|SINE|Alu -25131 NR_125347 10309 Hs.3041 NM_021147 ENSG00000152669 CCNO CCNU|CILD29|UDG2 cyclin O protein-coding 219.333-36 chr6 124110352 124110780 + 0.833333 NA intron (NM_001040214, intron 1 of 6) L1PA16|LINE|L1 -172439 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 244.667-18 chr4 128226741 128227132 + 0.833333 NA Intergenic Intergenic 60877 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 244.833-15 chr6 9778534 9778882 + 0.833333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -625794 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 235.5-9 chr12 74591244 74591603 + 0.833333 NA Intergenic Intergenic 53588 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 164.5-31 chr2 44909569 44910016 + 0.833333 NA Intergenic L1MEd|LINE|L1 29096 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 153.167-31 chr3 24484364 24484577 + 0.833333 NA intron (NM_001354709, intron 1 of 10) MER33|DNA|hAT-Charlie -9617 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 287.333-10 chr5 111425658 111426072 + 0.833333 NA intron (NM_001744, intron 5 of 10) intron (NM_001744, intron 5 of 10) -86361 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 266.667-7 chr16 79815730 79816292 + 0.833333 NA Intergenic L2a|LINE|L2 20762 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 119.333-90 chr5 163015755 163015923 + 0.833333 NA Intergenic Intergenic -421732 NM_001364023 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 123-79 chr6 152210942 152211116 + 0.833333 NA intron (NM_182961, intron 124 of 145) MIR3|SINE|MIR -25651 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 161.167-33 chr2 100245297 100245549 + 0.833333 NA intron (NR_103730, intron 1 of 2) L2b|LINE|L2 37169 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 166.667-50 chr6 80253695 80254072 + 0.833333 NA intron (NR_134945, intron 9 of 10) intron (NR_134945, intron 9 of 10) 147212 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 166.667-51 chr6 133212243 133212793 + 0.833333 NA Intergenic MIR|SINE|MIR -28839 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 115.667-52 chr2 100007047 100007198 + 0.833333 NA intron (NM_001025108, intron 5 of 23) intron (NM_001025108, intron 5 of 23) 98461 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 225.333-37 chr9 85985725 85986046 + 0.833333 NA intron (NM_024635, intron 11 of 22) HAL1|LINE|L1 44356 NM_001321882 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 218.167-9 chr15 88349642 88349982 + 0.833333 NA Intergenic MamGypsy2-I|LTR|Gypsy -93073 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 147.167-13 chr10 112180830 112181147 + 0.833333 NA intron (NM_001244949, intron 3 of 21) intron (NM_001244949, intron 3 of 21) 2777 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 271.5-7 chr17 32564601 32565236 + 0.833333 NA intron (NM_015194, intron 21 of 21) intron (NM_015194, intron 21 of 21) 77925 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 183.167-11 chr11 47931585 47932055 + 0.833333 NA Intergenic AluSq|SINE|Alu -48739 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 164.833-36 chr4 45538841 45539248 + 0.833333 NA Intergenic Intergenic 585010 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 160.5-56 chr7 89477145 89477505 + 0.833333 NA Intergenic AluJr|SINE|Alu -642075 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 156.833-6 chr1 214057823 214058011 + 0.833333 NA Intergenic L2b|LINE|L2 69384 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 139.333-93 chr9 28158012 28158505 + 0.833333 NA intron (NM_152570, intron 5 of 6) THE1B|LTR|ERVL-MaLR 561047 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 203-12 chr14 71637484 71637869 + 0.833333 NA intron (NM_001354286, intron 8 of 24) AluJr4|SINE|Alu 51378 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 216.667-32 chr4 70895380 70895995 + 0.833333 NA Intergenic Intergenic -6682 NM_001244766 92597 Hs.691454 NM_173468 ENSG00000173542 MOB1B MATS2|MOB4A|MOBKL1A MOB kinase activator 1B protein-coding 237.833-13 chr5 50981756 50982316 + 0.833333 NA Intergenic MER1A|DNA|hAT-Charlie -11849 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 261.833-15 chr7 31804162 31804663 + 0.833333 NA intron (NM_001322057, intron 17 of 17) L1MEc|LINE|L1 117197 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 170.333-38 chr2 80523118 80523331 + 0.833333 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 209845 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 234-18 chr19 41138395 41138787 + 0.833333 NA Intergenic L2|LINE|L2 24159 NM_000774 1572 Hs.558318 NM_000774 ENSG00000197446 CYP2F1 C2F1|CYP2F|CYPIIF1 cytochrome P450 family 2 subfamily F member 1 protein-coding 218.333-34 chr8 112065398 112065912 + 0.833333 NA Intergenic Intergenic -577838 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 135-37 chr2 79322978 79323403 + 0.833333 NA Intergenic Intergenic -163437 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 202.833-18 chr3 96560242 96560592 + 0.833333 NA Intergenic L1M5|LINE|L1 200453 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 250.333-21 chr7 84495902 84496348 + 0.833333 NA Intergenic AluSp|SINE|Alu -36351 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 179.333-20 chr14 66829450 66829858 + 0.833333 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) 322247 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 221-38 chr8 130207631 130208058 + 0.833333 NA intron (NM_001362925, intron 5 of 29) intron (NM_001362925, intron 5 of 29) 88689 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 150.167-20 chr15 92085682 92086028 + 0.833333 NA intron (NR_135775, intron 2 of 10) L1ME3B|LINE|L1 231551 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 235.167-21 chr4 107314328 107314789 + 0.833333 NA Intergenic Tigger5b|DNA|TcMar-Tigger -278245 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 132-36 chr17 54916137 54916370 + 0.833333 NA intron (NM_001321173, intron 7 of 9) L2c|LINE|L2 15401 NM_005486 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 306.167-3 chr7 3119525 3120151 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR 38735 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 180.167-8 chr11 33089246 33089598 + 0.833333 NA intron (NM_001326, intron 17 of 20) MER6B|DNA|TcMar-Tigger 13272 NR_015451 283267 Hs.533701 NR_015451 ENSG00000280798 LINC00294 NCRNA00294 long intergenic non-protein coding RNA 294 ncRNA 158.167-24 chr2 118790873 118791448 + 0.833333 NA Intergenic Intergenic 57023 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 177.667-15 chr12 50612290 50612790 + 0.833333 NA intron (NM_173602, intron 1 of 37) AluSz|SINE|Alu 107555 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 202-46 chr8 133476612 133476911 + 0.833333 NA intron (NM_003033, intron 3 of 8) intron (NM_003033, intron 3 of 8) 95126 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 136.667-112 chr9 28175590 28175823 + 0.833333 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 543599 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 131.167-50 chr3 69854382 69854703 + 0.833333 NA intron (NM_001354608, intron 2 of 10) MER2|DNA|TcMar-Tigger -11682 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 153.333-82 chr8 79916409 79916763 + 0.833333 NA Intergenic HAL1|LINE|L1 -44849 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 224.667-30 chr6 50041563 50042026 + 0.833333 NA TTS (NM_001369057) TTS (NM_001369057) 8135 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 174.667-8 chr10 78270285 78270568 + 0.833333 NA intron (NR_073447, intron 1 of 2) intron (NR_073447, intron 1 of 2) 3084 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 313-3 chr10 68403248 68403897 + 0.833333 NA intron (NM_001278225, intron 1 of 11) intron (NM_001278225, intron 1 of 11) 3617 NM_017987 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 148-12 chr10 9981668 9981996 + 0.833333 NA Intergenic Intergenic -76890 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 143.5-61 chr5 10024201 10024396 + 0.833333 NA Intergenic L1M3f|LINE|L1 -120474 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 301.667-9 chr20 43578557 43579053 + 0.833333 NA intron (NM_170693, intron 11 of 12) intron (NM_170693, intron 11 of 12) -12132 NM_001323580 51098 Hs.444332 NM_016004 ENSG00000101052 IFT52 C20orf9|CGI-53|NGD2|NGD5 intraflagellar transport 52 protein-coding 198.167-22 chr3 54168279 54168651 + 0.833333 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 45913 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 197.5-35 chr3 89660032 89660416 + 0.833333 NA Intergenic L1MEf|LINE|L1 552603 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 176.5-43 chr3 51053782 51054085 + 0.833333 NA intron (NM_004947, intron 5 of 52) HAL1|LINE|L1 -331358 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 247.833-2 chr1 208674658 208675216 + 0.833333 NA Intergenic Intergenic -53751 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 247.333 chr10 30282127 30282649 + 0.833333 NA Intergenic Intergenic 66950 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 159-70 chrX 31747983 31748264 + 0.833333 NA intron (NM_000109, intron 51 of 78) intron (NM_000109, intron 51 of 78) -239825 NM_004014 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 139.833-81 chr9 11227232 11227584 + 0.833333 NA Intergenic Charlie10|DNA|hAT-Charlie 614202 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 176.833-41 chrX 101011306 101011582 + 0.833333 NA intron (NM_001167972, intron 12 of 12) intron (NM_001167972, intron 12 of 12) 40667 NM_024917 79979 Hs.496501 NM_024917 ENSG00000188917 TRMT2B CXorf34|dJ341D10.3 tRNA methyltransferase 2 homolog B protein-coding 118.833-34 chr2 34380017 34380277 + 0.833333 NA Intergenic Intergenic -297410 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 114.333-104 chr5 128924831 128924994 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -40215 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 201-28 chr3 197123476 197123900 + 0.833333 NA intron (NM_001366216, intron 10 of 23) L1M5|LINE|L1 60184 NM_001366221 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 155-37 chr2 106940838 106941131 + 0.833333 NA Intergenic Intergenic -53875 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 216.833-16 chr2 159064678 159065142 + 0.833333 NA intron (NM_001350065, intron 3 of 27) (CCTTC)n|Simple_repeat|Simple_repeat 96270 NR_146421 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 147.5-78 chr7 104757066 104757308 + 0.833333 NA intron (NM_199000, intron 2 of 2) L1PA16|LINE|L1 46905 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 214.5-23 chr20 46756652 46756963 + 0.833333 NA Intergenic Intergenic 47158 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 119.667-58 chr3 26181325 26181587 + 0.833333 NA Intergenic Intergenic -307761 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 356.5-3 chr12 65314444 65315197 + 0.833333 NA intron (NM_001031679, intron 2 of 6) intron (NM_001031679, intron 2 of 6) 35833 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 285.167-7 chr5 44349487 44349985 + 0.833333 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -38996 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 219.667-5 chr11 85619403 85619983 + 0.833333 NA intron (NM_001351274, intron 2 of 26) AluSx1|SINE|Alu 7577 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 154.667-8 chr10 16263365 16263720 + 0.833333 NA Intergenic MIR3|SINE|MIR -173401 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 176-56 chr9 112901187 112901475 + 0.833333 NA Intergenic L1MB7|LINE|L1 -10455 NM_033051 57864 Hs.512668 NM_033051 ENSG00000119457 SLC46A2 Ly110|TSCOT solute carrier family 46 member 2 protein-coding 285.667-10 chr5 55018959 55019593 + 0.833333 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 4893 NR_104662 102467081 NR_104662 LOC102467081 - uncharacterized LOC102467081 ncRNA 146.667-44 chr17 73112866 73113178 + 0.833333 NA Intergenic Intergenic -20334 NM_001352693 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 140.833-19 chr15 58325913 58326223 + 0.833333 NA Intergenic L1PA16|LINE|L1 -105923 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 139.167-20 chr14 60693237 60693440 + 0.833333 NA Intergenic AluSx3|SINE|Alu 31013 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 125.167-15 chr11 38475311 38475483 + 0.833333 NA Intergenic Intergenic 170959 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 173-6 chr1 214148753 214149222 + 0.833333 NA Intergenic Intergenic -132172 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 166.833-48 chr9 31880021 31880510 + 0.833333 NA Intergenic Intergenic -498775 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 158-32 chr3 70776388 70776702 + 0.833333 NA Intergenic Intergenic 288379 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 127.833-36 chr2 41004132 41004389 + 0.833333 NA Intergenic Intergenic -491825 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 154.667-20 chr13 92627830 92628080 + 0.833333 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 92000 NR_049776 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 228.667-27 chr22 27222366 27223109 + 0.833333 NA intron (NM_001350812, intron 2 of 2) intron (NM_001350812, intron 2 of 2) 1942 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 131.167-19 chr12 48461858 48462206 + 0.833333 NA Intergenic L1ME2|LINE|L1 -10633 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 318.167 chr14 86944346 86944977 + 0.833333 NA Intergenic MIRb|SINE|MIR 38883 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 161-42 chr3 121767399 121767675 + 0.833333 NA Intergenic L1PA15-16|LINE|L1 -17770 NM_001256488 2804 Hs.213389 NM_004487 ENSG00000173230 GOLGB1 GCP|GCP372|GOLIM1 golgin B1 protein-coding 114-55 chr2 80170586 80170829 + 0.833333 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 134045 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 288-8 chr3 80027539 80027969 + 0.833333 NA Intergenic Intergenic -259756 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 115.333-30 chr14 57639345 57639497 + 0.833333 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -145564 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 225.333-15 chr2 123266007 123266504 + 0.833333 NA Intergenic Intergenic -192774 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 158.667-57 chr3 61967617 61967920 + 0.833333 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 351179 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 126.667-11 chr10 28068120 28068394 + 0.833333 NA intron (NR_134518, intron 12 of 16) intron (NR_134518, intron 12 of 16) 5121 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 164.833-34 chr3 186428552 186428780 + 0.833333 NA Intergenic Intergenic -11679 NR_151708 107986164 Hs.131227 NR_151708 ENSG00000234548 LINC02020 - long intergenic non-protein coding RNA 2020 ncRNA 248-23 chr7 89936148 89936623 + 0.833333 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -183015 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 129.333-72 chr5 55856743 55856914 + 0.833333 NA intron (NM_001297572, intron 2 of 10) intron (NM_001297572, intron 2 of 10) 3506 NM_001242639 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 311.333-5 chr2 156031826 156032519 + 0.833333 NA intron (NR_110250, intron 1 of 3) L1MD3|LINE|L1 222759 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 156.667-52 chr2 103855125 103855434 + 0.833333 NA Intergenic Intergenic 553053 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 242.667-27 chr8 105172490 105172863 + 0.833333 NA Intergenic L1MEd|LINE|L1 -145762 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 214.167-5 chr12 15746206 15746641 + 0.833333 NA intron (NM_004447, intron 1 of 20) L2b|LINE|L2 42965 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 132-50 chr22 25509923 25510188 + 0.833333 NA Intergenic Intergenic 54409 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 153.5-71 chr7 122534691 122535026 + 0.833333 NA intron (NM_001167940, intron 8 of 29) intron (NM_001167940, intron 8 of 29) 164259 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 238.5-32 chr8 75887914 75888267 + 0.833333 NA Intergenic Intergenic 348122 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 129.667-43 chr17 78229750 78230029 + 0.833333 NA Intergenic AluSz|SINE|Alu -1404 NM_001204212 283999 Hs.632228 NM_001145529 ENSG00000204278 TMEM235 ARGM1 transmembrane protein 235 protein-coding 126.333-31 chr14 54540482 54540693 + 0.833333 NA Intergenic Intergenic -27025 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 236-9 chr18 5019437 5019982 + 0.833333 NA Intergenic AluY|SINE|Alu -61473 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 306.333-5 chr5 104374621 104375088 + 0.833333 NA Intergenic Intergenic -724620 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 115.333-44 chr18 21006835 21007010 + 0.833333 NA intron (NM_005406, intron 14 of 32) intron (NM_005406, intron 14 of 32) 104891 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 208-46 chr8 142423883 142424313 + 0.833333 NA Intergenic Intergenic -20916 NM_001366902 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 315.5-7 chr7 5198758 5199522 + 0.833333 NA intron (NM_001278299, intron 2 of 12) AluJo|SINE|Alu 8907 NM_015610 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 160.833 chr1 20234942 20235341 + 0.833333 NA Intergenic Intergenic -7954 NR_147205 105376827 Hs.559701 NR_147205 ENSG00000228105 LINC01757 - long intergenic non-protein coding RNA 1757 ncRNA 221.5-32 chr6 108860863 108861493 + 0.833333 NA intron (NM_032131, intron 3 of 17) HAL1|LINE|L1 12756 NM_032131 84071 Hs.645481 NM_032131 ENSG00000118690 ARMC2 SPGF38|bA787I22.1 armadillo repeat containing 2 protein-coding 152.167-74 chr8 109241610 109241853 + 0.833333 NA 3' UTR (NM_001128211, exon 10 of 10) 3' UTR (NM_001128211, exon 10 of 10) 88202 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 116.167-4 chr1 92765443 92765819 + 0.833333 NA intron (NM_001308248, intron 1 of 18) intron (NM_001308248, intron 1 of 18) 19477 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 168.833-48 chr6 69190969 69191231 + 0.833333 NA intron (NM_001704, intron 17 of 31) MIRc|SINE|MIR 555818 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 254.5 chr14 20060870 20061295 + 0.833333 NA TTS (NM_001004717) TTS (NM_001004717) 1037 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 140-75 chr7 90693981 90694169 + 0.833333 NA intron (NM_001287135, intron 2 of 14) intron (NM_001287135, intron 2 of 14) -15323 NM_012395 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 153.5-12 chr11 28289925 28290131 + 0.833333 NA intron (NM_001113528, intron 4 of 6) intron (NM_001113528, intron 4 of 6) 181640 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 231.333-24 chr3 17953895 17954352 + 0.833333 NA Intergenic Intergenic -8429 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 115.667-34 chr14 76943998 76944225 + 0.833333 NA Intergenic Intergenic -15527 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 254.667-33 chr8 120408132 120408507 + 0.833333 NA intron (NM_014078, intron 6 of 6) intron (NM_014078, intron 6 of 6) 36831 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 193.5-12 chr12 116051180 116051618 + 0.833333 NA intron (NM_015335, intron 4 of 30) intron (NM_015335, intron 4 of 30) 97255 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 160.333-40 chr4 1916801 1917134 + 0.833333 NA exon (NM_133335, exon 4 of 22) exon (NM_133335, exon 4 of 22) 16341 NM_133334 7468 Hs.113876 NM_007331 ENSG00000109685 NSD2 KMT3F|KMT3G|MMSET|REIIBP|TRX5|WHS|WHSC1 nuclear receptor binding SET domain protein 2 protein-coding 152.833-44 chr3 72297387 72297623 + 0.833333 NA Intergenic AluSz6|SINE|Alu 146248 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 200-29 chr17 70021433 70021729 + 0.833333 NA Intergenic Intergenic -29690 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 262.333-18 chr3 197071572 197072378 + 0.833333 NA intron (NM_001366207, intron 18 of 24) L1M5|LINE|L1 -42158 NM_005929 4241 Hs.184727 NM_005929 ENSG00000163975 MELTF CD228|MAP97|MFI2|MTF1|MTf melanotransferrin protein-coding 247.5-9 chr16 9162580 9163097 + 0.833333 NA Intergenic L2c|LINE|L2 71194 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 285.667-9 chr5 13021138 13021705 + 0.833333 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 11465 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 133.833-15 chr11 47566874 47567052 + 0.833333 NA intron (NM_001143984, intron 1 of 1) intron (NM_001143984, intron 1 of 1) 1364 NM_175732 114971 Hs.656205 NM_175732 ENSG00000110536 PTPMT1 DUSP23|MOSP|PLIP|PNAS-129 protein tyrosine phosphatase mitochondrial 1 protein-coding 236.167-15 chr4 43765197 43765625 + 0.833333 NA Intergenic L1ME3B|LINE|L1 -251450 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 194.5-28 chr4 122694454 122694961 + 0.833333 NA Intergenic MamGypsy2-I|LTR|Gypsy 37751 NR_024041 729338 Hs.647968 NR_024041 CETN4P - centrin 4, pseudogene pseudo 279.667-15 chr6 162042969 162043342 + 0.833333 NA intron (NM_013988, intron 2 of 8) THE1A|LTR|ERVL-MaLR 572178 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 140.167-20 chr14 89784033 89784243 + 0.833333 NA Intergenic Intergenic -164973 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 152.333-59 chr7 5822363 5822602 + 0.833333 NA promoter-TSS (NR_023382) promoter-TSS (NR_023382) -678 NR_023382 401303 Hs.372707 NR_023382 ZNF815P ZNF815 zinc finger protein 815, pseudogene pseudo 270.167-6 chr17 17987136 17987626 + 0.833333 NA intron (NM_031294, intron 4 of 13) MIRb|SINE|MIR 14519 NM_001130092 83450 Hs.579264 NM_031294 ENSG00000171962 DRC3 CFAP134|LRRC48 dynein regulatory complex subunit 3 protein-coding 139.833-33 chr17 79416873 79417162 + 0.833333 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 99131 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 156.5-26 chr12 56466057 56466289 + 0.833333 NA Intergenic Intergenic -2405 NM_207344 283377 Hs.128676 NM_207344 ENSG00000176422 SPRYD4 - SPRY domain containing 4 protein-coding 169.5-49 chr4 65449533 65449823 + 0.833333 NA intron (NM_001281767, intron 5 of 16) MLT1C|LTR|ERVL-MaLR 219810 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 282.333-6 chr15 66468116 66468629 + 0.833333 NA intron (NM_002755, intron 5 of 10) MER4-int|LTR|ERV1 28662 NR_039737 100616149 NR_039737 ENSG00000266589 MIR4512 - microRNA 4512 ncRNA 245.167-14 chr6 77594492 77594822 + 0.833333 NA Intergenic HERVL-int|LTR|ERVL -55617 NM_001282136 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 167.833-29 chr2 106865996 106866209 + 0.833333 NA intron (NM_032528, intron 1 of 5) MIRb|SINE|MIR 19926 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 193.5-24 chr2 56298983 56299577 + 0.833333 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -113510 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 124.667-45 chr17 26815466 26815688 + 0.833333 NA Intergenic Intergenic 273664 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 148-64 chr5 17173395 17173606 + 0.833333 NA intron (NR_027253, intron 1 of 2) AluSc|SINE|Alu -17508 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 167.667-4 chr1 98470001 98470312 + 0.833333 NA Intergenic Intergenic -191565 NM_015976 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 210.667-31 chr21 35253466 35253815 + 0.833333 NA Intergenic Intergenic -204342 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 144.5-92 chr9 8584306 8584531 + 0.833333 NA intron (NM_130392, intron 3 of 30) intron (NM_130392, intron 3 of 30) 149528 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 183.333-22 chr15 66306885 66307167 + 0.833333 NA intron (NM_001323944, intron 3 of 16) intron (NM_001323944, intron 3 of 16) 13211 NM_001323941 115752 Hs.446251 NM_133375 ENSG00000166938 DIS3L DIS3L1 DIS3 like exosome 3'-5' exoribonuclease protein-coding 211-20 chr2 9872989 9873491 + 0.833333 NA intron (NM_001318977, intron 6 of 13) L2a|LINE|L2 29766 NM_005680 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 169.333-5 chr10 13558604 13558903 + 0.833333 NA Intergenic L1MC|LINE|L1 -28212 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 125-52 chr3 6691017 6691227 + 0.833333 NA intron (NR_110123, intron 2 of 3) L1MDa|LINE|L1 114327 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 207.167-26 chr5 89256243 89256728 + 0.833333 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -352380 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 145.5-38 chr2 128981574 128981986 + 0.833333 NA Intergenic Intergenic 117180 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 180.667-49 chr3 106012569 106013121 + 0.833333 NA Intergenic Intergenic -143444 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 246-5 chr13 52710023 52710588 + 0.833333 NA intron (NM_007015, intron 5 of 6) MIRb|SINE|MIR 29515 NM_007015 11061 Hs.421391 NM_007015 ENSG00000136110 CNMD BRICD3|CHM-I|CHM1|LECT1|MYETS1 chondromodulin protein-coding 207.333-27 chr2 114858597 114858962 + 0.833333 NA intron (NM_001321910, intron 2 of 26) MIR|SINE|MIR -25231 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 116-76 chr5 75909740 75909927 + 0.833333 NA Intergenic Intergenic -173550 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 197.833-33 chr7 31878248 31878526 + 0.833333 NA intron (NM_001191059, intron 5 of 18) intron (NM_001191059, intron 5 of 18) 191172 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 169.667-10 chr10 107873979 107874352 + 0.833333 NA intron (NR_125760, intron 4 of 4) intron (NR_125760, intron 4 of 4) 195128 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 248.833-13 chr8 87940884 87941287 + 0.833333 NA Intergenic L2c|LINE|L2 -67070 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 215.5-42 chr8 118910907 118911214 + 0.833333 NA Intergenic Intergenic 40825 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 157.333-68 chr7 53334048 53334366 + 0.833333 NA Intergenic Intergenic 298574 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 122.167-9 chr11 39384583 39384847 + 0.833333 NA Intergenic Intergenic 735857 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 370.5-3 chr14_GL000225v1_random 67235 68183 + 0.833333 NA NA BSR/Beta|Satellite|Satellite NA NA 170.833-11 chr14 55752158 55752466 + 0.833333 NA Intergenic Intergenic -13933 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 146.833-41 chr3 108802102 108802312 + 0.833333 NA Intergenic L1MA4|LINE|L1 -20579 NM_001317747 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 360.333-2 chr11 77270551 77271030 + 0.833333 NA intron (NM_182833, intron 7 of 16) intron (NM_182833, intron 7 of 16) 30876 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 132.833-53 chr5 36952795 36953082 + 0.833333 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 76169 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 147.167-51 chr5 131486108 131486495 + 0.833333 NA intron (NM_016340, intron 15 of 27) intron (NM_016340, intron 15 of 27) 148928 NM_001164386 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 198.667-20 chr15 100122046 100122410 + 0.833333 NA intron (NM_139057, intron 12 of 21) LTR41|LTR|ERVL 219747 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 169.333-41 chr20 41973343 41973788 + 0.833333 NA Intergenic L2a|LINE|L2 -355188 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 266.167-17 chr5 54760134 54760518 + 0.833333 NA Intergenic Intergenic -16068 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 302.333-3 chr14 70368916 70369427 + 0.833333 NA 3' UTR (NM_018373, exon 4 of 4) 3' UTR (NM_018373, exon 4 of 4) -9488 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 197.667-17 chr14 46834623 46835036 + 0.833333 NA Intergenic Intergenic -183048 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 187.833-12 chr12 52738528 52738816 + 0.833333 NA Intergenic AluJb|SINE|Alu -35148 NM_175078 374454 Hs.334989 NM_175078 ENSG00000189182 KRT77 K1B|KRT1B keratin 77 protein-coding 130.5-11 chr10 88580217 88580483 + 0.833333 NA intron (NM_018363, intron 3 of 6) intron (NM_018363, intron 3 of 6) 2968 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 158.667-49 chr20 16309220 16309594 + 0.833333 NA intron (NM_024704, intron 25 of 25) intron (NM_024704, intron 25 of 25) 264041 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 234.333-6 chr10 58229745 58230046 + 0.833333 NA intron (NM_152230, intron 2 of 5) L1PA6|LINE|L1 37999 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 116.5-15 chr12 15515345 15515635 + 0.833333 NA intron (NM_030667, intron 7 of 26) intron (NM_030667, intron 7 of 26) -31121 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 128.5-5 chr1 86061637 86062044 + 0.833333 NA intron (NM_152890, intron 8 of 59) intron (NM_152890, intron 8 of 59) 94631 NM_001349955 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 113.667-72 chr2 196347120 196347485 + 0.833333 NA intron (NM_020760, intron 2 of 28) AluSx3|SINE|Alu 14875 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 155-78 chr8 138959045 138959374 + 0.833333 NA Intergenic Intergenic -45168 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 184.5-45 chr6 139156567 139156993 + 0.833333 NA intron (NM_016217, intron 1 of 3) intron (NM_016217, intron 1 of 3) 21700 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 232.833-4 chr12 15551479 15551934 + 0.833333 NA intron (NM_030671, intron 3 of 13) intron (NM_030671, intron 3 of 13) 5095 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 188.5-55 chr8 132786172 132786447 + 0.833333 NA intron (NM_198513, intron 2 of 7) intron (NM_198513, intron 2 of 7) 10921 NM_001277196 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 315.333 chr1 43774177 43774822 + 0.833333 NA intron (NM_001270465, intron 2 of 7) intron (NM_001270465, intron 2 of 7) -47156 NR_125986 101929592 NR_125986 ENSG00000229444 LOC101929592 - uncharacterized LOC101929592 ncRNA 268.833-7 chr15 82791754 82792217 + 0.833333 NA intron (NM_001007122, intron 1 of 12) L1MB8|LINE|L1 14084 NM_001281806 123722 Hs.719372 NM_001007122 ENSG00000186628 FSD2 SPRYD1 fibronectin type III and SPRY domain containing 2 protein-coding 123.833-7 chr10 11451139 11451329 + 0.833333 NA Intergenic Intergenic 81046 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 162.5-24 chr16 80320381 80320817 + 0.833333 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -220135 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 212.833-21 chr5 91169326 91169815 + 0.833333 NA Intergenic L1MB1|LINE|L1 144832 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 210.167-8 chr11 91889865 91890162 + 0.833333 NA Intergenic MLT1F|LTR|ERVL-MaLR -335021 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 179.833-10 chr14 53697610 53697874 + 0.833333 NA Intergenic L1ME3B|LINE|L1 250742 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 183.667-70 chr6 140078763 140079021 + 0.833333 NA intron (NR_121622, intron 2 of 3) intron (NR_121622, intron 2 of 3) -87631 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 122-79 chr6 131380349 131380586 + 0.833333 NA Intergenic Intergenic 130063 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 126-64 chr4 73780226 73780529 + 0.833333 NA Intergenic Intergenic 39808 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 147.667-53 chr4 95991964 95992252 + 0.833333 NA Intergenic L1M3|LINE|L1 152015 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 135.667-56 chr2 109622436 109622615 + 0.833333 NA Intergenic Intergenic 8161 NM_023016 65124 Hs.355455 NM_023016 ENSG00000198142 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 158.5-63 chr5 25594297 25594659 + 0.833333 NA Intergenic Intergenic 403525 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 156.5-45 chr2 65196780 65197185 + 0.833333 NA Intergenic Intergenic -30713 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 186.334-4 chr5 167388309 167388958 + 0.833333 NA intron (NM_001122679, intron 3 of 29) L1PB1|LINE|L1 -185026 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 143.5-89 chr8 124545382 124545765 + 0.833333 NA intron (NM_001311168, intron 2 of 3) AluJr|SINE|Alu 6450 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 226-8 chr18 79151453 79151836 + 0.833333 NA intron (NR_148360, intron 6 of 31) L1ME3F|LINE|L1 82250 NM_001306085 374868 Hs.465475 NM_198531 ENSG00000166377 ATP9B ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1 ATPase phospholipid transporting 9B (putative) protein-coding 219-9 chr16 75989581 75990161 + 0.833333 NA Intergenic Intergenic -263381 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 300-8 chr4 110499157 110499989 + 0.833333 NA intron (NM_001977, intron 3 of 19) MER46C|DNA|TcMar-Tigger 23418 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 239.333-5 chr11 18238147 18238713 + 0.833333 NA 3' UTR (NM_001127380, exon 4 of 4) 3' UTR (NM_001127380, exon 4 of 4) -1628 NM_006512 6291 Hs.1955 NM_006512 ENSG00000148965 SAA4 C-SAA|CSAA serum amyloid A4, constitutive protein-coding 123.667-97 chr6 168207035 168207248 + 0.833333 NA Intergenic Intergenic 19376 NR_134590 105378137 Hs.549668 NR_134590 ENSG00000237987 LOC105378137 - uncharacterized LOC105378137 ncRNA 140.333-77 chr7 14945658 14946031 + 0.833333 NA intron (NM_001350717, intron 1 of 24) intron (NM_001350717, intron 1 of 24) 29014 NM_001350707 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 231.833-14 chr4 78859975 78860665 + 0.833333 NA intron (NM_017593, intron 8 of 13) L1PB4|LINE|L1 79118 NR_146463 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 114-59 chr2 151886378 151886886 + 0.833333 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) -58211 NM_012097 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 140-19 chr13 76532136 76532419 + 0.833333 NA Intergenic HAL1|LINE|L1 354128 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 283.333-4 chr2 124019306 124019699 + 0.833333 NA intron (NR_147976, intron 1 of 2) intron (NR_147976, intron 1 of 2) 5672 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 211.5-23 chr4 69609678 69610085 + 0.833333 NA intron (NM_001301239, intron 1 of 4) intron (NM_001301239, intron 1 of 4) 29761 NM_001301233 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 176.5-19 chr13 84812134 84812584 + 0.833333 NA Intergenic MER74C|LTR|ERVL 28705 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 121.333-122 chrX 27491579 27491836 + 0.833333 NA Intergenic L1M4|LINE|L1 -28366 NM_207319 139420 Hs.350673 NM_207319 ENSG00000224960 PPP4R3C FLFL3P|PPP4R3CP|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C protein-coding 248.333-10 chr6 27954748 27955103 + 0.833333 NA Intergenic Intergenic -2316 NM_012367 26212 Hs.532145 NM_012367 ENSG00000124657 OR2B6 OR2B1|OR2B1P|OR2B5|OR2B6P|OR5-40|OR5-41|OR6-31|dJ408B20.2 olfactory receptor family 2 subfamily B member 6 protein-coding 208.5-41 chr6 71530656 71530908 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR 109755 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 198-44 chr4 121524952 121525290 + 0.833333 NA Intergenic L1MEg|LINE|L1 -144103 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 122.833-62 chr4 43923393 43923583 + 0.833333 NA Intergenic Intergenic -93373 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 156-62 chr4 169667482 169667700 + 0.833333 NA intron (NM_001243374, intron 1 of 11) intron (NM_001243374, intron 1 of 11) 7529 NM_001243374 1182 Hs.481186 NM_001829 ENSG00000109572 CLCN3 CLC3|ClC-3 chloride voltage-gated channel 3 protein-coding 216.333-40 chr5 166006608 166007015 + 0.833333 NA Intergenic Intergenic 919559 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 129.833-72 chr8 90783963 90784217 + 0.833333 NA Intergenic Intergenic -7685 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 148-20 chr11 97131656 97131915 + 0.833333 NA Intergenic L1M1|LINE|L1 623360 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 239.667-6 chr13 63628703 63629096 + 0.833333 NA Intergenic Intergenic -108536 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 168.667-19 chr14 73749620 73749963 + 0.833333 NA intron (NM_001043318, intron 1 of 11) L1M4|LINE|L1 -8956 NR_039727 100616158 NR_039727 ENSG00000264741 MIR4505 mir-4505 microRNA 4505 ncRNA 211.833-7 chr14 34776721 34777175 + 0.833333 NA intron (NM_013448, intron 17 of 26) MLT1B|LTR|ERVL-MaLR -62125 NR_028131 1073 Hs.180141 NM_021914 ENSG00000165410 CFL2 NEM7 cofilin 2 protein-coding 233.333-41 chr8 26410290 26410933 + 0.833333 NA 3' UTR (NM_001330491, exon 6 of 6) 3' UTR (NM_001330491, exon 6 of 6) 20198 NM_001330491 665 Hs.131226 NM_004331 ENSG00000104765 BNIP3L BNIP3a|NIX BCL2 interacting protein 3 like protein-coding 166.167-68 chr9 106785114 106785405 + 0.833333 NA Intergenic MamGypsy2-I|LTR|Gypsy -77907 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 144.833-55 chr4 60273901 60274428 + 0.833333 NA Intergenic Intergenic -648455 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 238.5-13 chr17 62001370 62001735 + 0.833333 NA intron (NM_005121, intron 9 of 29) intron (NM_005121, intron 9 of 29) 63726 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 252.333-27 chr9 105143986 105144421 + 0.833333 NA Intergenic Tigger3a|DNA|TcMar-Tigger -100402 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 121-43 chr2 20675816 20675996 + 0.833333 NA 3' UTR (NM_182828, exon 2 of 2) 3' UTR (NM_182828, exon 2 of 2) 8762 NM_182828 151449 Hs.447688 NM_182828 ENSG00000143869 GDF7 BMP12 growth differentiation factor 7 protein-coding 219.333-4 chr10 18036991 18037398 + 0.833333 NA intron (NM_001282734, intron 11 of 11) L1M|LINE|L1 -26632 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 142-85 chr7 38435183 38435447 + 0.833333 NA intron (NM_001635, intron 12 of 20) intron (NM_001635, intron 12 of 20) 93738 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 146.167-20 chr15 92750264 92750488 + 0.833333 NA Intergenic Intergenic -45108 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 142.833-28 chr17 32846877 32847149 + 0.833333 NA intron (NM_015194, intron 1 of 21) intron (NM_015194, intron 1 of 21) 30111 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 139.333-43 chr16 71518257 71518484 + 0.833333 NA TTS (NR_135171) TTS (NR_135171) 4559 NR_135171 105371335 Hs.564879 NR_135171 ENSG00000260520 LOC105371335 - uncharacterized LOC105371335 ncRNA 177.333-22 chr15 62324685 62324897 + 0.833333 NA Intergenic Intergenic -18238 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 254.667-34 chr8 132511603 132512140 + 0.833333 NA Intergenic Intergenic -30776 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 141.667-14 chr11 30823551 30823828 + 0.833333 NA Intergenic MER63D|DNA|hAT-Blackjack 168997 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 230.667-7 chr14 70222747 70223081 + 0.833333 NA intron (NR_135825, intron 2 of 3) intron (NR_135825, intron 2 of 3) 24887 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 188.833-30 chr5 22435528 22435826 + 0.833333 NA intron (NM_004061, intron 2 of 14) LTR8|LTR|ERV1 -221827 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 195.833-7 chr12 10272267 10272716 + 0.833333 NA intron (NM_001351060, intron 2 of 8) intron (NM_001351060, intron 2 of 8) -31955 NM_001114396 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 120.333-83 chr4 41525761 41526025 + 0.833333 NA intron (NM_001289122, intron 3 of 25) intron (NM_001289122, intron 3 of 25) -12264 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 143.167-60 chr4 160934019 160934275 + 0.833333 NA Intergenic Intergenic -1088586 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 180.5-39 chr4 32129517 32129918 + 0.833333 NA intron (NR_125936, intron 1 of 2) MLT1J|LTR|ERVL-MaLR -107295 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 276.667-10 chr9 122356404 122356915 + 0.833333 NA Intergenic MIR3|SINE|MIR -13874 NM_001271166 5742 Hs.201978 NM_000962 ENSG00000095303 PTGS1 COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS prostaglandin-endoperoxide synthase 1 protein-coding 115.5-32 chr13 85380659 85381135 + 0.833333 NA intron (NR_046989, intron 1 of 3) Tigger1|DNA|TcMar-Tigger 17294 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 148.5-16 chr12 126543343 126543559 + 0.833333 NA Intergenic L1M4|LINE|L1 -94124 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 136.833-30 chr2 77880912 77881147 + 0.833333 NA intron (NR_110288, intron 1 of 3) L1MD2|LINE|L1 -34905 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 171.167-56 chr8 85437704 85437938 + 0.833333 NA Intergenic Intergenic -1038 NM_005181 761 Hs.82129 NM_005181 ENSG00000164879 CA3 CAIII|Car3 carbonic anhydrase 3 protein-coding 198.167-15 chr18 62300149 62300426 + 0.833333 NA intron (NR_144409, intron 31 of 31) L2c|LINE|L2 -25000 NM_001270950 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 141.167-73 chr8 81164733 81165055 + 0.833333 NA Intergenic Intergenic -52826 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 221.833-2 chr10 115154218 115154730 + 0.833333 NA intron (NM_001276282, intron 5 of 7) L1PA5|LINE|L1 61109 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 189.667-14 chr13 79833824 79834051 + 0.833333 NA Intergenic Intergenic 29551 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 154.333-67 chr6 123019458 123019832 + 0.833333 NA intron (NM_001010852, intron 3 of 5) intron (NM_001010852, intron 3 of 5) 23410 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 129.667-56 chr2 195155663 195156002 + 0.833333 NA Intergenic Intergenic 425237 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 244.333-33 chr8 102047258 102047648 + 0.833333 NA intron (NM_001040624, intron 1 of 7) MER3|DNA|hAT-Charlie 63021 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 174-38 chr3 88486727 88487102 + 0.833333 NA Intergenic L1M5|LINE|L1 148458 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 171.167-29 chr2 196110508 196110846 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -41840 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 116.167-48 chr3 116502813 116503111 + 0.833333 NA Intergenic Intergenic -49511 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 237-11 chr20 14179747 14180180 + 0.833333 NA intron (NM_001351663, intron 3 of 17) L1MB3|LINE|L1 157649 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 175.333-18 chr15 95587777 95588302 + 0.833333 NA Intergenic Intergenic 154946 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 121.167 chr1 17069300 17069514 + 0.833333 NA intron (NM_007365, intron 15 of 15) MIRb|SINE|MIR -15237 NM_003000 6390 Hs.465924 NM_003000 ENSG00000117118 SDHB CWS2|IP|PGL4|SDH|SDH1|SDH2|SDHIP succinate dehydrogenase complex iron sulfur subunit B protein-coding 156.167-43 chr3 145557763 145558177 + 0.833333 NA Intergenic L1MA9|LINE|L1 511215 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 267.333-9 chr14 50064819 50065384 + 0.833333 NA intron (NR_131171, intron 2 of 8) MLT1I|LTR|ERVL-MaLR 39942 NR_131171 196913 Hs.406934 NM_001014830 LINC01599 C14orf183 long intergenic non-protein coding RNA 1599 ncRNA 141.5-25 chr12 127922647 127922907 + 0.833333 NA intron (NR_046392, intron 1 of 4) L1MD|LINE|L1 7367 NR_046392 100862680 Hs.385496 NR_046392 ENSG00000256193 LINC00507 - long intergenic non-protein coding RNA 507 ncRNA 177.333-65 chr8 113479520 113479825 + 0.833333 NA Intergenic LOR1-int|LTR|ERV1 -42733 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 143.833-37 chr5 34834308 34834591 + 0.833333 NA Intergenic Intergenic -4715 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 219.833-18 chr5 11019390 11019688 + 0.833333 NA intron (NM_001288715, intron 16 of 20) intron (NM_001288715, intron 16 of 20) -258305 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 133.333-56 chr2 68141807 68142129 + 0.833333 NA intron (NM_138458, intron 3 of 7) intron (NM_138458, intron 3 of 7) 15559 NM_001256476 116143 Hs.631877 NM_138458 ENSG00000243667 WDR92 - WD repeat domain 92 protein-coding 120.167-42 chr2 185947437 185947677 + 0.833333 NA Intergenic MIR|SINE|MIR 138760 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 156.5-30 chr14 38956242 38956590 + 0.833333 NA Intergenic Intergenic -39534 NR_039982 283547 Hs.675941 NR_039982 ENSG00000259070 LINC00639 - long intergenic non-protein coding RNA 639 ncRNA 159.667-3 chr1 57804391 57804805 + 0.833333 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -55983 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 221.5-25 chr22 27631502 27631895 + 0.833333 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 170058 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 161.833-35 chr5 111741339 111741585 + 0.833333 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) 14789 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 164-60 chr6 72613609 72613811 + 0.833333 NA Intergenic Intergenic -8133 NM_001160132 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 126.5-67 chr4 49100134 49100386 + 0.833333 NA Intergenic (CATTC)n|Satellite|Satellite 113618 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 231.333-3 chr1 147223438 147223973 + 0.833333 NA intron (NM_001461, intron 2 of 8) intron (NM_001461, intron 2 of 8) 1634 NM_001461 2330 Hs.642706 NM_001461 ENSG00000131781 FMO5 - flavin containing dimethylaniline monoxygenase 5 protein-coding 140.5-44 chr3 24014210 24014424 + 0.833333 NA Intergenic AluSx|SINE|Alu 68196 NM_001145425 9975 Hs.37288 NM_005126 ENSG00000174738 NR1D2 BD73|EAR-1R|REVERBB|REVERBbeta|RVR nuclear receptor subfamily 1 group D member 2 protein-coding 154-87 chr9 719933 720117 + 0.833333 NA intron (NM_001354331, intron 3 of 10) intron (NM_001354331, intron 3 of 10) 13348 NR_148869 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 214-48 chr7 89729386 89729805 + 0.833333 NA Intergenic Intergenic -389805 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 295.167-3 chr12 11555095 11555806 + 0.833333 NA non-coding (NR_033890, exon 6 of 8) non-coding (NR_033890, exon 6 of 8) 7420 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 232.5-7 chr14 43907803 43908555 + 0.833333 NA Intergenic Intergenic 599104 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 231.167-6 chr11 20455656 20456107 + 0.833333 NA intron (NM_005788, intron 11 of 15) L1ME4b|LINE|L1 68165 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 293.833-4 chr2 83545703 83546088 + 0.833333 NA Intergenic Intergenic 23081 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 147.333-9 chr10 81722262 81722634 + 0.833333 NA Intergenic L1ME1|LINE|L1 -152746 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 261.333-20 chr6 42501169 42501763 + 0.833333 NA Intergenic AluY|SINE|Alu -49242 NM_033502 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 198.833-12 chr2 36129321 36129826 + 0.833333 NA Intergenic AluSx1|SINE|Alu 225997 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 135-58 chr3 68336167 68336451 + 0.833333 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -164328 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 236-14 chr21 18248267 18248683 + 0.833333 NA intron (NM_001204174, intron 1 of 5) intron (NM_001204174, intron 1 of 5) 2600 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 125.333-102 chr6 55411068 55411289 + 0.833333 NA Intergenic MIR|SINE|MIR 83709 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 218.833-6 chr11 104359384 104359771 + 0.833333 NA Intergenic L1ME3B|LINE|L1 -195430 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 204.333-58 chr8 128450732 128451149 + 0.833333 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 113739 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 230.833-25 chr9 26841573 26841920 + 0.833333 NA 3' UTR (NM_024828, exon 6 of 6) 3' UTR (NM_024828, exon 6 of 6) 51056 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 117-87 chr5 53493179 53493335 + 0.833333 NA Intergenic Intergenic 12628 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 315.167-12 chr5 72367670 72368311 + 0.833333 NA 3' UTR (NM_001284403, exon 7 of 7) 3' UTR (NM_001284403, exon 7 of 7) 47617 NM_024754 79810 Hs.126906 NM_024754 ENSG00000049883 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 219.167-6 chr10 8231811 8232318 + 0.833333 NA Intergenic Intergenic 36241 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 243-4 chr10 75473184 75473845 + 0.833333 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) 41890 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 230-21 chr3 32883863 32884162 + 0.833333 NA intron (NM_001039111, intron 2 of 3) intron (NM_001039111, intron 2 of 3) 66015 NM_001039111 131405 Hs.113170 NM_001039111 ENSG00000206557 TRIM71 LIN-41|LIN41 tripartite motif containing 71 protein-coding 182.833-56 chr8 76940331 76940730 + 0.833333 NA Intergenic L2b|LINE|L2 26320 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 119.333-121 chr9 91263026 91263463 + 0.833333 NA intron (NM_001698, intron 6 of 9) intron (NM_001698, intron 6 of 9) 98680 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 154.833-15 chr12 95483588 95483860 + 0.833333 NA intron (NM_001317182, intron 3 of 10) intron (NM_001317182, intron 3 of 10) 9572 NM_001317183 10988 Hs.444986 NM_006838 ENSG00000111142 METAP2 MAP2|MNPEP|p67eIF2 methionyl aminopeptidase 2 protein-coding 139.333-98 chrX 73938646 73939095 + 0.833333 NA Intergenic L1MB7|LINE|L1 -5454 NR_024582 554203 Hs.648316 NR_024582 ENSG00000225470 JPX DCBALD06|ENOX|LINC00183|NCRNA00183 JPX transcript, XIST activator ncRNA 141.167-25 chr14 78897471 78897748 + 0.833333 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -302373 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 195.5-21 chr17 49636233 49636583 + 0.833333 NA intron (NM_001007228, intron 1 of 9) intron (NM_001007228, intron 1 of 9) -9819 NM_001370732 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 119.5-59 chr22 43186292 43186760 + 0.833333 NA intron (NM_015140, intron 1 of 13) intron (NM_015140, intron 1 of 13) 608 NM_015140 23170 Hs.517670 NM_015140 ENSG00000100304 TTLL12 dJ526I14.2 tubulin tyrosine ligase like 12 protein-coding 216.333-21 chr2 59146707 59147082 + 0.833333 NA Intergenic MIRb|SINE|MIR -70814 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 141.667-66 chr3 85393116 85393332 + 0.833333 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 7514 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 114-15 chr10 53154774 53155052 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -383213 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 280.167-15 chr8 130230399 130230955 + 0.833333 NA intron (NM_001362925, intron 4 of 29) intron (NM_001362925, intron 4 of 29) 65856 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 162.667-11 chr11 114052252 114052465 + 0.833333 NA Intergenic MLT1J1|LTR|ERVL-MaLR -7353 NM_001354750 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 137-29 chr13 37125685 37125914 + 0.833333 NA Intergenic AluSq2|SINE|Alu -20135 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 210.167-27 chr8 130587002 130587450 + 0.833333 NA Intergenic Intergenic -143552 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 113.833-35 chr2 1729134 1729398 + 0.833333 NA intron (NM_012293, intron 1 of 22) intron (NM_012293, intron 1 of 22) 15249 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 215.833-24 chr8 126247255 126247614 + 0.833333 NA Intergenic L1MD3|LINE|L1 -78061 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 215.667-13 chr12 102786587 102786964 + 0.833333 NA Intergenic LTR16|LTR|ERVL 37624 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 192.667-41 chr5 51461032 51461377 + 0.833333 NA Intergenic Intergenic 77756 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 229.167-23 chr3 105649991 105650468 + 0.833333 NA Intergenic Intergenic 217362 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 149.667-66 chr6 40901429 40901697 + 0.833333 NA intron (NR_110873, intron 2 of 5) intron (NR_110873, intron 2 of 5) 121717 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 148.5-61 chr6 24534948 24535160 + 0.833333 NA 3' UTR (NM_001368954, exon 9 of 9) 3' UTR (NM_001368954, exon 9 of 9) 40085 NM_001080 7915 Hs.371723 NM_001080 ENSG00000112294 ALDH5A1 SSADH|SSDH aldehyde dehydrogenase 5 family member A1 protein-coding 213.333-43 chr8 26204581 26204982 + 0.833333 NA Intergenic Intergenic -86727 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 193.667-57 chr8 90592423 90592924 + 0.833333 NA TTS (NR_104062) TTS (NR_104062) 13390 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 205.333-15 chr15 57808169 57808599 + 0.833333 NA Intergenic Intergenic 101670 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 146-4 chr1 225363171 225363434 + 0.833333 NA intron (NM_001367479, intron 75 of 85) L1MC4|LINE|L1 64736 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 274.5-3 chr14 52977186 52977774 + 0.833333 NA Intergenic AluJb|SINE|Alu -26383 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 204.833-3 chr1 66709795 66710095 + 0.833333 NA intron (NM_001350218, intron 16 of 22) intron (NM_001350218, intron 16 of 22) -42514 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 117.5-45 chr3 165219852 165220032 + 0.833333 NA intron (NR_125764, intron 1 of 5) L3|LINE|CR1 12982 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 265-3 chr1 113186708 113187222 + 0.833333 NA Intergenic AluSx|SINE|Alu 19288 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 153.333-3 chr1 172210503 172210818 + 0.833333 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -65825 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 390.833 chr3 117459196 117460212 + 0.833333 NA Intergenic Intergenic 231221 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 151.5-38 chr2 85941130 85941471 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR 52020 NR_110569 101928113 Hs.625888 NR_110569 ST3GAL5-AS1 - ST3GAL5 antisense RNA 1 (head to head) ncRNA 217-9 chr19 50796955 50797302 + 0.833333 NA TTS (NM_032712) TTS (NM_032712) 1997 NR_003068 692203 NR_003068 ENSG00000221381 SNORD88B HBII-180B small nucleolar RNA, C/D box 88B snoRNA 164-34 chr2 125988714 125989086 + 0.833333 NA Intergenic L1PB1|LINE|L1 129085 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 134.333-24 chr12 14191433 14191652 + 0.833333 NA Intergenic L1PA15|LINE|L1 -174090 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 160-73 chr9 24415013 24415430 + 0.833333 NA Intergenic Intergenic 130455 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 128.667-33 chr13 100908242 100908441 + 0.833333 NA intron (NR_047687, intron 2 of 7) intron (NR_047687, intron 2 of 7) 36023 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 179.333-45 chr5 120537094 120537749 + 0.833333 NA intron (NM_001308088, intron 1 of 3) Charlie15b|DNA|hAT-Charlie 5957 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 252.667-12 chr19 36538416 36538927 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR -10400 NM_001166036 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 132.667-89 chr7 48071884 48072159 + 0.833333 NA Intergenic Intergenic -16582 NM_001287428 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 281.833-6 chr2 15681870 15682396 + 0.833333 NA Intergenic MSTB1|LTR|ERVL-MaLR -8649 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 123.5-52 chr21 16962991 16963179 + 0.833333 NA Intergenic L1M2a|LINE|L1 372848 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 216.667-10 chr12 75426133 75426689 + 0.833333 NA intron (NR_072995, intron 5 of 6) intron (NR_072995, intron 5 of 6) 35322 NM_001270396 144321 Hs.406728 NM_152436 ENSG00000180481 GLIPR1L2 - GLIPR1 like 2 protein-coding 138-37 chr15 83405899 83406110 + 0.833333 NA Intergenic L1M7|LINE|L1 -41224 NR_125370 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 142.167-44 chr2 228526926 228527315 + 0.833333 NA intron (NR_151716, intron 1 of 3) intron (NR_151716, intron 1 of 3) 84275 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 178-51 chr6 46470722 46470988 + 0.833333 NA intron (NM_001251973, intron 1 of 4) intron (NM_001251973, intron 1 of 4) 20468 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 219.5-8 chr12 28713812 28714229 + 0.833333 NA Intergenic Intergenic -435258 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 188.333-21 chr17 9370960 9371401 + 0.833333 NA intron (NM_004853, intron 7 of 7) intron (NM_004853, intron 7 of 7) -192062 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 165.833-27 chr17 40642029 40642504 + 0.833333 NA intron (NM_003079, intron 4 of 10) intron (NM_003079, intron 4 of 10) 5552 NM_003079 6605 Hs.743978 NM_003079 ENSG00000073584 SMARCE1 BAF57|CSS5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding 323.167-4 chr6 46953868 46954387 + 0.833333 NA intron (NM_015234, intron 1 of 20) intron (NM_015234, intron 1 of 20) 812 NM_015234 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 220.667-39 chr7 62814941 62815329 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 488921 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 175.5-8 chr10 44529383 44529685 + 0.833333 NA Intergenic L1MB5|LINE|L1 -144437 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 120.167-66 chr5 127629313 127629528 + 0.833333 NA Intergenic Intergenic -19601 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 181-22 chr13 113465822 113466114 + 0.833333 NA intron (NM_001014283, intron 4 of 6) AluSz6|SINE|Alu -12480 NM_138430 113622 Hs.98669 NM_138430 ENSG00000153531 ADPRHL1 ARH2 ADP-ribosylhydrolase like 1 protein-coding 130.167-79 chr9 76252611 76253074 + 0.833333 NA intron (NM_001190482, intron 24 of 36) intron (NM_001190482, intron 24 of 36) 141584 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 161-34 chr2 223547365 223547591 + 0.833333 NA Intergenic L1MA10|LINE|L1 54883 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 181.5-48 chr5 96892773 96893151 + 0.833333 NA intron (NM_001329229, intron 5 of 17) MIR|SINE|MIR 17023 NM_022350 64167 Hs.482910 NM_022350 ENSG00000164308 ERAP2 L-RAP|LRAP endoplasmic reticulum aminopeptidase 2 protein-coding 208.5-15 chr15 65365391 65365887 + 0.833333 NA intron (NM_004884, intron 2 of 13) intron (NM_004884, intron 2 of 13) 12363 NM_004884 9543 Hs.128292 NM_004884 ENSG00000174498 IGDCC3 HsT18880|PUNC immunoglobulin superfamily DCC subclass member 3 protein-coding 151-5 chr1 177297470 177297761 + 0.833333 NA Intergenic L1PA16|LINE|L1 -53971 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 172.667-53 chr3 126046054 126046335 + 0.833333 NA intron (NM_001008486, intron 2 of 10) L1M4c|LINE|L1 10581 NM_001008487 54946 Hs.573007 NM_017836 ENSG00000114544 SLC41A3 SLC41A1-L2 solute carrier family 41 member 3 protein-coding 121-85 chr7 68089123 68089342 + 0.833333 NA Intergenic Intergenic 68979 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 169.167-44 chr8 107718640 107718998 + 0.833333 NA Intergenic L1MEc|LINE|L1 -220901 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 226.667-4 chr1 185528672 185529162 + 0.833333 NA Intergenic Intergenic 99571 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 195.333-3 chr10 32053801 32054213 + 0.833333 NA intron (NM_004521, intron 1 of 25) intron (NM_004521, intron 1 of 25) 2418 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 195.833-15 chr2 39799792 39800220 + 0.833333 NA Intergenic L1MEh|LINE|L1 -20730 NM_001321475 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 219.833-5 chr11 103093135 103093668 + 0.833333 NA Intergenic L1MC5|LINE|L1 -1241 NM_001318740 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 158.667-44 chr2 64586370 64586586 + 0.833333 NA intron (NM_001002243, intron 8 of 8) intron (NM_001002243, intron 8 of 8) -20834 NR_034023 339807 Hs.434736 NR_034023 ENSG00000233694 LINC02579 - long intergenic non-protein coding RNA 2579 ncRNA 261.834-3 chr5 78916967 78917637 + 0.833333 NA intron (NM_198709, intron 5 of 7) intron (NM_198709, intron 5 of 7) 68008 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 208.5-24 chr2 66376116 66376385 + 0.833333 NA Intergenic Intergenic -7056 NR_130931 729348 Hs.723595 NR_130931 ENSG00000232164 LINC01873 - long intergenic non-protein coding RNA 1873 ncRNA 180.667-4 chr1 179493922 179494427 + 0.833333 NA intron (NM_144696, intron 20 of 25) AluSz|SINE|Alu 81774 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 239.833-10 chr14 80209412 80209949 + 0.833333 NA intron (NR_158990, intron 1 of 2) intron (NR_158990, intron 1 of 2) -1739 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 227.5-7 chr10 100279925 100280344 + 0.833333 NA exon (NM_001001342, exon 3 of 4) exon (NM_001001342, exon 3 of 4) 6230 NM_001001342 282991 Hs.34906 NM_173809 ENSG00000196072 BLOC1S2 BLOS2|BORCS2|CEAP|CEAP11 biogenesis of lysosomal organelles complex 1 subunit 2 protein-coding 196-16 chr11 132429407 132429711 + 0.833333 NA intron (NM_002545, intron 6 of 6) intron (NM_002545, intron 6 of 6) 145257 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 128.167-19 chr12 61989967 61990229 + 0.833333 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 202741 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 228.667-24 chr2 172764337 172764985 + 0.833333 NA intron (NM_007023, intron 1 of 30) intron (NM_007023, intron 1 of 30) -28455 NR_026995 91149 Hs.711021 NR_026995 ENSG00000228016 RAPGEF4-AS1 - RAPGEF4 antisense RNA 1 ncRNA 198.333-7 chr12 25996697 25997018 + 0.833333 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) 23102 NM_001164747 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 154.167-56 chr5 102507362 102507657 + 0.833333 NA Intergenic AluSg|SINE|Alu -8508 NM_001308014 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 156.5-2 chr1 48121874 48122125 + 0.833333 NA intron (NR_026749, intron 9 of 9) intron (NR_026749, intron 9 of 9) 60429 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 224.333 chr1 114499025 114499493 + 0.833333 NA intron (NM_015906, intron 1 of 19) HAL1|LINE|L1 11944 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 150-72 chr6 118901665 118901889 + 0.833333 NA intron (NM_014034, intron 2 of 3) intron (NM_014034, intron 2 of 3) 7625 NM_014034 25842 Hs.292316 NM_014034 ENSG00000111875 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 196-9 chr10 80862887 80863284 + 0.833333 NA Intergenic X1_LINE|LINE|CR1 213288 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 125.833-48 chr20 4735487 4735961 + 0.833333 NA intron (NR_024269, intron 1 of 1) intron (NR_024269, intron 1 of 1) 4944 NR_024268 149830 Hs.126516 NM_177549 ENSG00000180259 PRNT M8 prion locus lncRNA, testis expressed ncRNA 185.667-43 chr5 127131968 127132465 + 0.833333 NA Intergenic Arthur1B|DNA|hAT-Tip100 -58724 NM_001164478 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 212-27 chr4 78045845 78046370 + 0.833333 NA Intergenic HAL1ME|LINE|L1 -11216 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 342.167-5 chr8 122223657 122224285 + 0.833333 NA Intergenic Intergenic 344673 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 133.333-109 chr6 136563567 136563825 + 0.833333 NA intron (NM_005923, intron 26 of 29) intron (NM_005923, intron 26 of 29) -12877 NM_001198617 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 146.833-22 chr16 8458004 8458323 + 0.833333 NA Intergenic Intergenic 131675 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 270-14 chr8 32333047 32333516 + 0.833333 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -107465 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 246.667-12 chr2 12202345 12202809 + 0.833333 NA intron (NR_110196, intron 3 of 5) Plat_L3|LINE|CR1 3447 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 138.667-27 chr14 35351584 35351859 + 0.833333 NA Intergenic Intergenic 53033 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA EDAID2|IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 262.333-15 chr2 181851729 181852314 + 0.833333 NA Intergenic Intergenic -39709 NM_006751 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 143.5-53 chr3 30395143 30395432 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -123581 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 153.5-45 chr3 106089965 106090216 + 0.833333 NA Intergenic Intergenic -220689 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 163.167-3 chr11 15548200 15548499 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -95536 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 212.833-15 chr3 81716697 81717013 + 0.833333 NA intron (NM_000158, intron 1 of 15) intron (NM_000158, intron 1 of 15) 44790 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 205.667-22 chr15 95565838 95566187 + 0.833333 NA Intergenic Intergenic 132919 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 326.167-8 chr5 105029962 105030555 + 0.833333 NA Intergenic Intergenic -69216 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 209.167-8 chr12 77547682 77548216 + 0.833333 NA Intergenic Intergenic -282945 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 147.5-43 chr2 41839919 41840241 + 0.833333 NA Intergenic MIR|SINE|MIR -37475 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 206.333-30 chr6 169016663 169017140 + 0.833333 NA Intergenic L1PA15|LINE|L1 18742 NR_134622 101929460 Hs.355225 NR_134622 ENSG00000229720 LOC101929460 - uncharacterized LOC101929460 ncRNA 213.5-2 chr10 99018634 99018954 + 0.833333 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) -94226 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 209.167-26 chr4 126762021 126762334 + 0.833333 NA Intergenic Intergenic -870780 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 182-18 chr16 10442364 10442739 + 0.833333 NA intron (NR_045816, intron 6 of 9) HERVIP10B3-int|LTR|ERV1 56490 NR_045816 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 175-39 chr3 82281607 82281918 + 0.833333 NA intron (NR_147146, intron 3 of 8) MIR|SINE|MIR 295620 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 265.667-16 chr4 73637127 73637691 + 0.833333 NA Intergenic L1PB3|LINE|L1 -16778 NM_201431 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 244.333-28 chr7 31160844 31161247 + 0.833333 NA Intergenic Intergenic 108584 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 136.833-47 chr4 55189406 55189905 + 0.833333 NA Intergenic L1PA13|LINE|L1 -64060 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 315.333-6 chr2 37184923 37185569 + 0.833333 NA intron (NM_001367551, intron 2 of 6) intron (NM_001367551, intron 2 of 6) 3424 NM_001367551 391365 Hs.631892 NM_001032377 ENSG00000138068 SULT6B1 ST6B1 sulfotransferase family 6B member 1 protein-coding 182.167-35 chr5 166683646 166684124 + 0.833333 NA Intergenic Intergenic 242485 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 182.5-49 chrX 118209768 118210034 + 0.833333 NA Intergenic AluYm1|SINE|Alu -92561 NM_001168301 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 210.833-20 chr3 114472085 114472395 + 0.833333 NA intron (NR_121661, intron 1 of 2) intron (NR_121661, intron 1 of 2) 18647 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 166.167-63 chr8 110590035 110590243 + 0.833333 NA Intergenic Intergenic 437294 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 123-32 chr16 80846760 80847032 + 0.833333 NA intron (NR_131948, intron 1 of 2) MLT1A0|LTR|ERVL-MaLR -42298 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 285.5-13 chr22 20789818 20790337 + 0.833333 NA intron (NM_058004, intron 19 of 54) intron (NM_058004, intron 19 of 54) 15964 NM_000185 3053 Hs.474270 NM_000185 ENSG00000099937 SERPIND1 D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10 serpin family D member 1 protein-coding 167-61 chr8 111852608 111852888 + 0.833333 NA Intergenic L1MA6|LINE|L1 476109 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 136.667-74 chr4 144642245 144642450 + 0.833333 NA TTS (NR_037595) TTS (NR_037595) 3672 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 255.5-11 chr21 20621914 20622318 + 0.833333 NA Intergenic Intergenic 180992 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 133.167-54 chr6 45735132 45735308 + 0.833333 NA Intergenic MIR|SINE|MIR 202377 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 152.333-37 chr20 35436849 35437100 + 0.833333 NA intron (NM_001319138, intron 3 of 3) MIR3|SINE|MIR 1254 NM_000557 8200 Hs.1573 NM_000557 ENSG00000125965 GDF5 BDA1C|BMP-14|BMP14|CDMP1|LAP-4|LAP4|OS5|SYM1B|SYNS2 growth differentiation factor 5 protein-coding 195-50 chr9 27205721 27206147 + 0.833333 NA intron (NM_001290077, intron 13 of 21) intron (NM_001290077, intron 13 of 21) 76859 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 264.167-23 chr8 110652683 110653089 + 0.833333 NA Intergenic Intergenic 374547 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 124.833-71 chr5 19065178 19065395 + 0.833333 NA Intergenic Intergenic 820986 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 117-91 chr5 80984314 80984647 + 0.833333 NA intron (NM_006909, intron 1 of 26) intron (NM_006909, intron 1 of 26) -23573 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 153.5-53 chr5 30935632 30935910 + 0.833333 NA Intergenic UCON29|DNA|PiggyBac? -257915 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 230.333-3 chr13 29674045 29674494 + 0.833333 NA Intergenic L1MB2|LINE|L1 26576 NR_135320 102723345 Hs.121353 NR_135320 LOC102723345 - uncharacterized LOC102723345 ncRNA 146-35 chr2 80990955 80991191 + 0.833333 NA Intergenic L1MA3|LINE|L1 475873 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 229.333-22 chr22 31874616 31875232 + 0.833333 NA intron (NR_157128, intron 35 of 40) L2c|LINE|L2 63530 NM_001302819 25775 Hs.627602 NM_015372 ENSG00000128254 C22orf24 HSN44A4A chromosome 22 open reading frame 24 protein-coding 175.833-16 chr17 60501086 60501424 + 0.833333 NA intron (NM_006380, intron 1 of 12) AluJo|SINE|Alu 24985 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 135.833-38 chr2 220588495 220588712 + 0.833333 NA Intergenic MIRb|SINE|MIR -682038 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 128.833-44 chr2 59311173 59311496 + 0.833333 NA Intergenic L1MC|LINE|L1 93626 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 205.5-44 chr8 100377252 100377542 + 0.833333 NA Intergenic Intergenic -5366 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 130-99 chr8 86559028 86559351 + 0.833333 NA 3' UTR (NM_003909, exon 17 of 17) 3' UTR (NM_003909, exon 17 of 17) 44754 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 117.333-76 chr3 192918914 192919377 + 0.833333 NA Intergenic Intergenic -1289 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 256.833-7 chr18 3160954 3161430 + 0.833333 NA intron (NM_019856, intron 10 of 36) intron (NM_019856, intron 10 of 36) 58776 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 156.667-19 chr10 110804801 110805070 + 0.833333 NA intron (NM_001134363, intron 7 of 13) intron (NM_001134363, intron 7 of 13) 65969 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 143.333-53 chr22 40065615 40065919 + 0.833333 NA intron (NM_001024843, intron 1 of 23) L1MEc|LINE|L1 20950 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 147.667-68 chr8 78412092 78412371 + 0.833333 NA Intergenic L1PA17|LINE|L1 -104109 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 128.5-66 chr6 35153283 35153733 + 0.833333 NA Intergenic L1MC1|LINE|L1 -12098 NM_001261819 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 444.667 chr2 64172673 64173648 + 0.833333 NA Intergenic Intergenic -28740 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 160.833-41 chr6 33700964 33701180 + 0.833333 NA intron (NM_032340, intron 2 of 3) intron (NM_032340, intron 2 of 3) 2944 NR_037498 100500873 NR_037498 ENSG00000266509 MIR3934 - microRNA 3934 ncRNA 134.167-65 chr5 17837002 17837170 + 0.833333 NA intron (NR_134286, intron 2 of 7) L1PA11|LINE|L1 29812 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 217.667-8 chr12 65163771 65164292 + 0.833333 NA Intergenic MIRb|SINE|MIR -5552 NM_001167614 23592 Hs.744150 NM_014319 ENSG00000174106 LEMD3 MAN1 LEM domain containing 3 protein-coding 225-30 chr5 26342265 26342788 + 0.833333 NA Intergenic AluSx|SINE|Alu 696060 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 161.167-21 chr15 68840648 68841071 + 0.833333 NA Intergenic L1MC4|LINE|L1 -19964 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 195-19 chr2 86608065 86608395 + 0.833333 NA intron (NM_005667, intron 3 of 3) AluSz|SINE|Alu 15635 NM_001198952 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 260.833-5 chr11 104818970 104819324 + 0.833333 NA Intergenic Intergenic 79523 NR_034061 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 254-17 chr3 146987752 146988125 + 0.833333 NA Intergenic MIR|SINE|MIR 66015 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 177.667-73 chr8 140640190 140640408 + 0.833333 NA Intergenic AluSz|SINE|Alu -4666 NM_012154 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 198-26 chr2 27944255 27944838 + 0.833333 NA intron (NM_199193, intron 4 of 13) L1ME1|LINE|L1 -51821 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 113.5-95 chrX 68535042 68535208 + 0.833333 NA 3' UTR (NM_173834, exon 7 of 7) 3' UTR (NM_173834, exon 7 of 7) 36074 NM_173834 286451 Hs.82719 NM_173834 ENSG00000181704 YIPF6 FinGER6 Yip1 domain family member 6 protein-coding 177.833-6 chr12 131747970 131748342 + 0.833333 NA intron (NM_004592, intron 7 of 17) Charlie26a|DNA|hAT-Charlie 37066 NM_001261411 6433 Hs.308171 NM_004592 ENSG00000061936 SFSWAP SFRS8|SWAP splicing factor SWAP protein-coding 128.833-7 chr1 104708246 104708521 + 0.833333 NA Intergenic L1MB8|LINE|L1 635360 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 217.167-17 chr8 123994467 123994775 + 0.833333 NA intron (NM_001039112, intron 12 of 40) L1PB3|LINE|L1 46161 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 162.5-40 chr20 48695434 48695784 + 0.833333 NA intron (NM_020820, intron 7 of 39) L1ME3A|LINE|L1 132390 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 187.167-23 chr3 16332676 16333099 + 0.833333 NA intron (NM_015150, intron 7 of 9) Tigger17a|DNA|TcMar-Tigger 67675 NM_138381 92106 Hs.655449 NM_138381 ENSG00000154814 OXNAD1 - oxidoreductase NAD binding domain containing 1 protein-coding 122-55 chr3 115907669 115908068 + 0.833333 NA intron (NM_001318915, intron 3 of 8) intron (NM_001318915, intron 3 of 8) -2742 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 206.5-12 chr16 84759359 84759815 + 0.833333 NA intron (NR_073577, intron 4 of 11) intron (NR_073577, intron 4 of 11) 59587 NM_001272075 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 154.5-10 chr11 77671764 77672085 + 0.833333 NA intron (NM_016578, intron 15 of 15) AluSz|SINE|Alu -34118 NM_001311199 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 141.333-23 chr12 118505826 118506049 + 0.833333 NA Intergenic Intergenic 129382 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 182.833-20 chr15 67221321 67221754 + 0.833333 NA intron (NM_001271885, intron 5 of 9) L3|LINE|CR1 33124 NM_024666 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 150-85 chr8 124489776 124490035 + 0.833333 NA intron (NM_001146160, intron 9 of 9) intron (NM_001146160, intron 9 of 9) 15138 NM_007218 11236 Hs.744151 NM_007218 ENSG00000170881 RNF139 HRCA1|RCA1|TRC8 ring finger protein 139 protein-coding 148-56 chr3 192826370 192826609 + 0.833333 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 91367 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 189-47 chr7 117241011 117241329 + 0.833333 NA Intergenic Intergenic 58489 NR_002332 93655 Hs.368131 NR_002332 ENSG00000004866 ST7-OT3 NCRNA00026|ST7|ST7OT3 ST7 overlapping transcript 3 ncRNA 135.667-78 chr4 96376147 96376332 + 0.833333 NA intron (NR_147149, intron 1 of 3) intron (NR_147149, intron 1 of 3) 65536 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 190.167-26 chr2 55009411 55009898 + 0.833333 NA intron (NM_153828, intron 1 of 6) intron (NM_153828, intron 1 of 6) 618 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 141.667-81 chr4 77726214 77726710 + 0.833333 NA intron (NM_001365006, intron 10 of 11) intron (NM_001365006, intron 10 of 11) 92602 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 145.667-94 chr7 71693683 71693938 + 0.833333 NA intron (NM_022479, intron 9 of 10) L1PA13|LINE|L1 -386040 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 159.333-52 chr4 32163405 32163755 + 0.833333 NA Intergenic Intergenic -141158 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 117.167-50 chr2 211791154 211791443 + 0.833333 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 635062 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 252.333-5 chr10 54431041 54431522 + 0.833333 NA intron (NM_001142773, intron 2 of 31) L1MA2|LINE|L1 -54949 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 176.167-41 chr6 142311109 142311500 + 0.833333 NA intron (NM_198569, intron 2 of 24) intron (NM_198569, intron 2 of 24) 9297 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 280.5-13 chr9 70648046 70648696 + 0.833333 NA intron (NM_001366143, intron 9 of 25) AluJb|SINE|Alu 161713 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 124.5-35 chr2 42010826 42011161 + 0.833333 NA Intergenic Intergenic -37028 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 153.833-25 chr15 65013689 65013925 + 0.833333 NA intron (NM_139242, intron 6 of 8) AluSz|SINE|Alu 15832 NM_139242 123263 Hs.531615 NM_139242 ENSG00000103707 MTFMT COXPD15|FMT1|MC1DN27 mitochondrial methionyl-tRNA formyltransferase protein-coding 162.5-72 chr7 90603872 90604258 + 0.833333 NA intron (NM_001287135, intron 1 of 14) intron (NM_001287135, intron 1 of 14) 7744 NM_001287135 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 131.833-18 chr14 98426262 98426448 + 0.833333 NA Intergenic HAL1|LINE|L1 -285258 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 160.167-32 chr20 44137102 44137384 + 0.833333 NA intron (NM_020433, intron 2 of 5) intron (NM_020433, intron 2 of 5) 49945 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 136.833 chr1 111244184 111244494 + 0.833333 NA TTS (NM_001025197) TTS (NM_001025197) 14603 NM_001025199 1117 Hs.514840 NM_004000 ENSG00000064886 CHI3L2 CHIL2|YKL-39|YKL39 chitinase 3 like 2 protein-coding 170-8 chr12 1716839 1717302 + 0.833333 NA intron (NM_024551, intron 1 of 7).2 intron (NM_024551, intron 1 of 7).2 26000 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 166.833-36 chr6 24163457 24163785 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 37406 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 233.333-44 chr8 130774575 130774996 + 0.833333 NA Intergenic THE1B-int|LTR|ERVL-MaLR 266124 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 194.667 chr1 30769931 30770277 + 0.833333 NA Intergenic AluJo|SINE|Alu -12330 NM_006762 7805 Hs.371021 NM_006762 ENSG00000162511 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 165-3 chr1 114427815 114428174 + 0.833333 NA intron (NM_015906, intron 6 of 19) intron (NM_015906, intron 6 of 19) 83209 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 161.167-18 chr14 59996128 59996516 + 0.833333 NA intron (NR_075071, intron 17 of 32) Charlie18a|DNA|hAT-Charlie 76609 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 145.333-24 chr14 48007461 48007688 + 0.833333 NA Intergenic Intergenic -212560 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 253.833-14 chr7 5444030 5444448 + 0.833333 NA Intergenic AluJr4|SINE|Alu -15312 NM_001354886 100129484 Hs.147507 NM_001354886 LOC100129484 - uncharacterized LOC100129484 protein-coding 167.333-60 chr6 75049642 75050074 + 0.833333 NA Intergenic Intergenic 78924 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 263.333-19 chr5 124714429 124714791 + 0.833333 NA intron (NM_020747, intron 1 of 8) MIR|SINE|MIR 30502 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 266.833-2 chr10 30447685 30448119 + 0.833333 NA exon (NM_001320961, exon 3 of 8) exon (NM_001320961, exon 3 of 8) 13256 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 150.167-29 chr2 73581290 73581574 + 0.833333 NA intron (NM_015120, intron 16 of 22) L1MB8|LINE|L1 60990 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 118.667-17 chr10 70166450 70166728 + 0.833333 NA intron (NM_001142648, intron 1 of 7) intron (NM_001142648, intron 1 of 7) 3925 NM_001142648 56681 Hs.499960 NM_020150 ENSG00000079332 SAR1A SAR1|SARA1|Sara|masra2 secretion associated Ras related GTPase 1A protein-coding 117.333-105 chr8 57329156 57329531 + 0.833333 NA Intergenic Intergenic -14444 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 138.5-58 chr5 104661964 104662364 + 0.833333 NA Intergenic Intergenic -437310 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 210.833-14 chr2 8852224 8852719 + 0.833333 NA TTS (NM_001321266) TTS (NM_001321266) -14858 NM_001348735 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 132.5-104 chr9 82866413 82866705 + 0.833333 NA Intergenic L1MA6|LINE|L1 196583 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 209.833-15 chr3 98776720 98777288 + 0.833333 NA intron (NM_001271147, intron 6 of 9) MLT1J|LTR|ERVL-MaLR 13697 NM_001323368 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 230.667-20 chr4 81895414 81895736 + 0.833333 NA Intergenic Intergenic -423668 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 220.667-5 chr11 99202306 99202736 + 0.833333 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 181572 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 135.667-112 chr9 24542432 24542883 + 0.833333 NA TTS (NM_001365008) TTS (NM_001365008) 3019 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 266.667-23 chr8 64712660 64713117 + 0.833333 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 85849 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 133.167-59 chr7 12494421 12494683 + 0.833333 NA Intergenic Intergenic -1877 NR_136261 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 171-14 chr14 42200992 42201340 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR 594310 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 163.833-64 chr9 101656132 101656558 + 0.833333 NA intron (NM_133445, intron 3 of 8) intron (NM_133445, intron 3 of 8) -61376 NM_147180 5535 Hs.151167 NM_147180 ENSG00000188386 PPP3R2 PPP3RL protein phosphatase 3 regulatory subunit B, beta protein-coding 159 chr1 7255562 7255855 + 0.833333 NA intron (NM_001349608, intron 4 of 21) intron (NM_001349608, intron 4 of 21) 134046 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 265-11 chr16 60065143 60065768 + 0.833333 NA Intergenic MLT1F1-int|LTR|ERVL-MaLR 210102 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 243.833-12 chr2 28683426 28683957 + 0.833333 NA Intergenic Intergenic 52514 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 137.333-21 chr13 51012957 51013175 + 0.833333 NA intron (NR_003923, intron 12 of 16) L1ME2|LINE|L1 53091 NR_003923 2974 Hs.411573 NM_004129 ENSG00000123201 GUCY1B2 GC-SB2 guanylate cyclase 1 soluble subunit beta 2 (pseudogene) pseudo 197.5-37 chr3 124996264 124996657 + 0.833333 NA intron (NM_020733, intron 12 of 16) intron (NM_020733, intron 12 of 16) 59537 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 226.167-13 chr2 42131293 42131612 + 0.833333 NA Intergenic Intergenic -37901 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 205.167-6 chr10 68138772 68139173 + 0.833333 NA intron (NM_001256268, intron 6 of 23) HAL1|LINE|L1 29484 NR_045663 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 350-3 chr16 10084708 10085449 + 0.833333 NA intron (NM_001134408, intron 2 of 13) MIR|SINE|MIR 96989 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 147.167-58 chr7 95584062 95584324 + 0.833333 NA 3' UTR (NM_002612, exon 11 of 11) 3' UTR (NM_002612, exon 11 of 11) 12323 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 118-64 chr2 235051975 235052127 + 0.833333 NA intron (NM_001371302, intron 4 of 5) MLT1C|LTR|ERVL-MaLR 24316 NM_001371306 139.5-80 chr9 99107788 99108111 + 0.833333 NA intron (NM_004612, intron 1 of 8) intron (NM_004612, intron 1 of 8) 2836 NM_004612 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 210.167-13 chr18 78181302 78181747 + 0.833333 NA Intergenic L4_A_Mam|LINE|RTE-X -187797 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 148.333-90 chr7 40961304 40961572 + 0.833333 NA Intergenic Intergenic 18501 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 174.667-10 chr11 35959054 35959323 + 0.833333 NA intron (NM_001304264, intron 1 of 5) intron (NM_001304264, intron 1 of 5) 15126 NM_174902 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 121.833-18 chr15 92720340 92720698 + 0.833333 NA Intergenic L2a|LINE|L2 -64744 NM_207446 400451 Hs.27373 NM_207446 ENSG00000185442 FAM174B - family with sequence similarity 174 member B protein-coding 172.667-26 chr14 86997138 86997498 + 0.833333 NA Intergenic L1MC1|LINE|L1 91540 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 122.833-86 chr8 119262886 119263226 + 0.833333 NA Intergenic Intergenic -16199 NR_149113 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 147.5-58 chr3 141396792 141397088 + 0.833333 NA intron (NM_001080412, intron 6 of 7) Tigger1|DNA|TcMar-Tigger -5409 NM_001350100 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 204.833-9 chr12 20650366 20650765 + 0.833333 NA exon (NM_001244683, exon 13 of 15) exon (NM_001244683, exon 13 of 15) -44790 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 184.667-20 chr14 71011624 71012011 + 0.833333 NA intron (NM_001308160, intron 8 of 33) intron (NM_001308160, intron 8 of 33) 104358 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 118-104 chr6 50389876 50390206 + 0.833333 NA Intergenic Intergenic -323503 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 213.833-23 chr3 89220199 89220731 + 0.833333 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 112844 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 212-3 chr10 37854940 37855244 + 0.833333 NA intron (NR_147999, intron 3 of 7) intron (NR_147999, intron 3 of 7) 2518 NR_148000 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 213.5-25 chr3 48448752 48449248 + 0.833333 NA intron (NM_001271023, intron 1 of 12) L2b|LINE|L2 1874 NM_001271023 84126 Hs.694840 NM_032166 ENSG00000164053 ATRIP - ATR interacting protein protein-coding 128.667-78 chr3 136583324 136583667 + 0.833333 NA intron (NM_005862, intron 4 of 33) intron (NM_005862, intron 4 of 33) 168883 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 140.333-80 chr7 67849093 67849518 + 0.833333 NA Intergenic Intergenic -170948 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 214.333-16 chr14 26722338 26722794 + 0.833333 NA intron (NR_147061, intron 2 of 6) intron (NR_147061, intron 2 of 6) -86782 NR_110557 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 143-73 chr7 11229005 11229240 + 0.833333 NA Intergenic Intergenic 255250 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 326.167 chr10 15411395 15412036 + 0.833333 NA Intergenic Intergenic -40426 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 169.5-10 chr11 38064000 38064352 + 0.833333 NA Intergenic Intergenic 125575 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 122.667-35 chr17 51964218 51964409 + 0.833333 NA intron (NM_001082533, intron 3 of 9) L1PA16|LINE|L1 194401 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 256.5-40 chrX 105876383 105876911 + 0.833333 NA intron (NM_198465, intron 2 of 28) intron (NM_198465, intron 2 of 28) 54108 NM_198465 203447 Hs.209527 NM_198465 ENSG00000123572 NRK NESK Nik related kinase protein-coding 272.167-9 chr14 36020888 36021326 + 0.833333 NA Intergenic Intergenic -49320 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 147.5-64 chr4 53709708 53710003 + 0.833333 NA intron (NR_125918, intron 1 of 2) intron (NR_125918, intron 1 of 2) 13954 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 159.667-56 chr22 49678553 49678880 + 0.833333 NA Intergenic Intergenic -21197 NR_110522 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 197-42 chr6 148702669 148702968 + 0.833333 NA Intergenic L1MC2|LINE|L1 -44212 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 189-15 chr2 111109268 111109607 + 0.833333 NA intron (NR_122074, intron 2 of 3) L1M4a1|LINE|L1 6151 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 118.5-9 chr1 169832170 169832388 + 0.833333 NA intron (NM_001366772, intron 14 of 22) intron (NM_001366772, intron 14 of 22) 37239 NM_001366772 55732 Hs.443551 NM_018186 ENSG00000000460 C1orf112 - chromosome 1 open reading frame 112 protein-coding 153.167-54 chr7 61113501 61113712 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 2190450 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 187.167-12 chr16 8457494 8457866 + 0.833333 NA Intergenic MER66B|LTR|ERV1 132158 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 193.5-28 chr2 108257831 108258216 + 0.833333 NA intron (NM_001008743, intron 5 of 7) intron (NM_001008743, intron 5 of 7) 18055 NM_001320878 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 116.333-55 chr20 41893956 41894240 + 0.833333 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -275721 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 172.667-36 chr18 36102852 36103122 + 0.833333 NA Intergenic L1ME1|LINE|L1 26353 NM_012319 25800 Hs.79136 NM_012319 ENSG00000141424 SLC39A6 LIV-1|ZIP6 solute carrier family 39 member 6 protein-coding 216.333-11 chr11 114442303 114442645 + 0.833333 NA intron (NM_015523, intron 2 of 6) intron (NM_015523, intron 2 of 6) 3007 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 158.833-39 chr3 79759037 79759442 + 0.833333 NA intron (NM_002941, intron 1 of 30) (TATAA)n|Simple_repeat|Simple_repeat 8759 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 225.167-11 chr2 34827526 34827985 + 0.833333 NA Intergenic Intergenic 150198 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 197.5-26 chr2 61952847 61953247 + 0.833333 NA intron (NM_152516, intron 1 of 2) AluSx|SINE|Alu 47405 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 257.5-11 chr3 160834813 160835449 + 0.833333 NA intron (NM_139245, intron 1 of 3) (CTT)n|Simple_repeat|Simple_repeat -7018 NM_001317911 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 114-107 chr9 29101354 29101745 + 0.833333 NA intron (NM_001354574, intron 1 of 5) L1MA2|LINE|L1 110750 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 144.5-43 chr2 40191494 40191748 + 0.833333 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 238683 NM_021097 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 163.333-67 chr6 509711 509945 + 0.833333 NA intron (NM_018303, intron 23 of 27) intron (NM_018303, intron 23 of 27) 118076 NR_046000 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 135.5-13 chr10 100097803 100098052 + 0.833333 NA Intergenic Intergenic -16058 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 194.5-42 chr8 29155667 29155935 + 0.833333 NA exon (NM_015254, exon 14 of 40) exon (NM_015254, exon 14 of 40) 107269 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 186.333-33 chr2 43767184 43767641 + 0.833333 NA 3' UTR (NM_172069, exon 30 of 30) 3' UTR (NM_172069, exon 30 of 30) -6627 NM_001348913 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 152.333-38 chr21 18049543 18049738 + 0.833333 NA intron (NM_001204178, intron 2 of 5) MLT1B|LTR|ERVL-MaLR 132300 NM_001204176 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 123.5-60 chr4 124502728 124502879 + 0.833333 NA intron (NR_110838, intron 8 of 8) intron (NR_110838, intron 8 of 8) 55631 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 221.333-36 chr8 118654701 118655133 + 0.833333 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -32954 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 125.333-10 chr1 217253592 217253796 + 0.833333 NA Intergenic MLT1E2|LTR|ERVL-MaLR -115992 NM_001243511 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 153.5-58 chr5 136529739 136530128 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -164457 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 198-64 chr9 130047318 130047634 + 0.833333 NA Intergenic AluSg|SINE|Alu -4287 NM_001363755 23048 Hs.189409 NM_015033 ENSG00000187239 FNBP1 FBP17 formin binding protein 1 protein-coding 132.5-70 chr5 13371608 13371869 + 0.833333 NA Intergenic L1ME3D|LINE|L1 -338852 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 156.5-60 chr3 132785848 132786119 + 0.833333 NA intron (NR_002811, intron 3 of 10) L1PA13|LINE|L1 -63524 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 162-28 chr16 79938115 79938381 + 0.833333 NA Intergenic Intergenic 142999 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 190-29 chr2 83116079 83116500 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 259486 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 239.833-15 chr2 75121131 75121431 + 0.833333 NA intron (NM_015727, intron 1 of 3) intron (NM_015727, intron 1 of 3) 30469 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 150.833-42 chr5 113794735 113795074 + 0.833333 NA Intergenic Intergenic 281210 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 213-21 chr20 23948441 23948772 + 0.833333 NA Intergenic L1PA12|LINE|L1 38269 NM_178312 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 125.333-57 chr17 61288058 61288342 + 0.833333 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 79504 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 171.667-46 chr20 49575922 49576337 + 0.833333 NA Intergenic Intergenic -7992 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 176.667-8 chr1 174766077 174766457 + 0.833333 NA intron (NM_001366451, intron 3 of 12) MLT1B|LTR|ERVL-MaLR -33471 NM_001366456 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 272.333-17 chr5 73285681 73286286 + 0.833333 NA Intergenic AluSc8|SINE|Alu -51923 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 225.5-9 chr11 15101868 15102397 + 0.833333 NA Intergenic MLT1A1|LTR|ERVL-MaLR -10292 NM_001031853 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 116.5-86 chr7 94556291 94556446 + 0.833333 NA 3' UTR (NM_022900, exon 18 of 18) 3' UTR (NM_022900, exon 18 of 18) 46559 NM_001363426 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 190.333-11 chr10 121265801 121266065 + 0.833333 NA Intergenic Intergenic 265381 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 136.167-31 chr18 34783510 34783865 + 0.833333 NA intron (NM_001198945, intron 4 of 10) intron (NM_001198945, intron 4 of 10) 27711 NM_001391 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 115.833-21 chr14 68031556 68031798 + 0.833333 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 208085 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 155.667-12 chr1 235182582 235182987 + 0.833333 NA exon (NM_016374, exon 20 of 24) exon (NM_016374, exon 20 of 24) 7332 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 140.333-61 chr4 150791099 150791313 + 0.833333 NA intron (NM_001367550, intron 34 of 56) FLAM_A|SINE|Alu 209055 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 222.833-4 chr14 52298569 52298942 + 0.833333 NA Intergenic L1ME4c|LINE|L1 -15557 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 292.833-2 chr1 30228040 30228665 + 0.833333 NA Intergenic Intergenic -190740 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 135-50 chr20 8194863 8195049 + 0.833333 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) -53748 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 192.167-46 chr9 79244482 79244856 + 0.833333 NA Intergenic MIR3|SINE|MIR -99003 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 120.167-62 chr4 165535973 165536153 + 0.833333 NA Intergenic Intergenic -148576 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 146.667-79 chr6 123013477 123013728 + 0.833333 NA intron (NM_001010852, intron 3 of 5) intron (NM_001010852, intron 3 of 5) 17367 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 303.667-9 chr8 119755341 119755847 + 0.833333 NA intron (NM_003184, intron 22 of 25) L1ME4b|LINE|L1 77247 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 135.167-76 chr5 43046617 43046801 + 0.833333 NA intron (NR_104651, intron 2 of 2) intron (NR_104651, intron 2 of 2) 4575 NR_015447 153684 Hs.259625 NR_015447 ENSG00000215068 LOC153684 - uncharacterized LOC153684 ncRNA 204.333-16 chr14 31235164 31235435 + 0.833333 NA Intergenic AluJb|SINE|Alu -27506 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 218.833-20 chr3 196838748 196839053 + 0.833333 NA Intergenic AluSq2|SINE|Alu -28956 NM_001308045 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 160.5-39 chr4 57332366 57332582 + 0.833333 NA Intergenic MIR3|SINE|MIR -93398 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 183.667-66 chr6 22221107 22221400 + 0.833333 NA Intergenic Intergenic -74060 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 208.333-40 chr6 124980854 124981424 + 0.833333 NA intron (NR_136734, intron 2 of 6) intron (NR_136734, intron 2 of 6) -2229 NR_104440 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 251.333-19 chr5 35425879 35426239 + 0.833333 NA Intergenic Intergenic -191804 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 173.667-40 chr3 165838385 165838775 + 0.833333 NA Intergenic MIRb|SINE|MIR -1157 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 132-96 chr8 118676629 118676862 + 0.833333 NA intron (NR_038210, intron 3 of 4) intron (NR_038210, intron 3 of 4) -54782 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 167-28 chr19 42004876 42005185 + 0.833333 NA intron (NM_002088, intron 16 of 18) MLT1F2|LTR|ERVL-MaLR -10800 NM_001256214 478 Hs.515427 NM_152296 ENSG00000105409 ATP1A3 AHC2|ATP1A1|CAPOS|DYT12|RDP ATPase Na+/K+ transporting subunit alpha 3 protein-coding 225.167-23 chr4 44919138 44919538 + 0.833333 NA Intergenic THE1C|LTR|ERVL-MaLR -192704 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 143.167-66 chr5 24924342 24924584 + 0.833333 NA Intergenic Intergenic -83880 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 120-9 chr1 233574366 233574779 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR -39534 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 182.667-39 chr21 16325204 16325646 + 0.833333 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -40657 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 212.833-4 chr14 55170818 55171135 + 0.833333 NA intron (NM_001146015, intron 10 of 19) intron (NM_001146015, intron 10 of 19) 20609 NM_014750 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 184.167-16 chr12 45312237 45312624 + 0.833333 NA intron (NM_001025356, intron 2 of 19) intron (NM_001025356, intron 2 of 19) 19740 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 142.167-40 chr2 124238193 124238405 + 0.833333 NA intron (NM_130773, intron 2 of 23) intron (NM_130773, intron 2 of 23) 213012 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 115.5-104 chr8 130522555 130522716 + 0.833333 NA Intergenic Intergenic -78961 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 230.333-10 chr2 55306532 55307029 + 0.833333 NA intron (NM_001254943, intron 25 of 33) AluSz|SINE|Alu 24461 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 220.833-5 chr14 84769400 84769933 + 0.833333 NA Intergenic Intergenic -502266 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 284.333-6 chr3 134491674 134492018 + 0.833333 NA intron (NM_001353122, intron 2 of 12) intron (NM_001353122, intron 2 of 12) 5673 NM_001353121 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 237.333-40 chr8 116096141 116096555 + 0.833333 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 228711 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 115.5-100 chr8 116853572 116853817 + 0.833333 NA intron (NM_006265, intron 9 of 13) intron (NM_006265, intron 9 of 13) -20730 NR_033886 644660 Hs.706174 NR_033886 ENSG00000253327 RAD21-AS1 C8orf81|NCRNA00255 RAD21 antisense RNA 1 ncRNA 156.333-38 chr17 59148637 59148902 + 0.833333 NA intron (NM_182620, intron 1 of 3) AluJb|SINE|Alu 2452 NR_029842 407027 NR_029842 ENSG00000207996 MIR301A MIR301|MIRN301|MIRN301A|mir-301a microRNA 301a ncRNA 159.833-50 chr8 78235910 78236262 + 0.833333 NA Intergenic Intergenic -280254 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 148.667-33 chr2 17973743 17974114 + 0.833333 NA Intergenic Intergenic 95261 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 150.333-97 chr8 11667706 11667977 + 0.833333 NA Intergenic L1MD|LINE|L1 -9094 NM_001308094 2626 Hs.243987 NM_002052 ENSG00000136574 GATA4 ASD2|TACHD|TOF|VSD1 GATA binding protein 4 protein-coding 245.167-7 chr3 110476783 110477200 + 0.833333 NA Intergenic Intergenic 592968 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 150.667-48 chr2 35358178 35358551 + 0.833333 NA Intergenic L1ME1|LINE|L1 -113041 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 141.5-23 chr12 111732541 111732728 + 0.833333 NA intron (NM_025247, intron 10 of 20) intron (NM_025247, intron 10 of 20) -34299 NM_001204889 217 Hs.604551 NM_000690 ENSG00000111275 ALDH2 ALDH-E2|ALDHI|ALDM aldehyde dehydrogenase 2 family member protein-coding 313.333-8 chr5 91713501 91714072 + 0.833333 NA Intergenic Intergenic -330469 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 169.5-25 chr16 56162588 56162950 + 0.833333 NA intron (NR_027078, intron 2 of 4) MIRb|SINE|MIR 28325 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 113.667-133 chrX 109072757 109072939 + 0.833333 NA Intergenic L1MA6|LINE|L1 336308 NR_110652 101928358 Hs.722300 NR_110652 ENSG00000237863 LOC101928358 - uncharacterized LOC101928358 ncRNA 185.5-33 chr4 70612991 70613326 + 0.833333 NA Intergenic Intergenic -15586 NM_031889 10117 Hs.667018 NM_031889 ENSG00000132464 ENAM ADAI|AI1C|AIH2 enamelin protein-coding 180.667-35 chr2 96580079 96580690 + 0.833333 NA Intergenic L1ME3A|LINE|L1 42505 NM_001319092 10865 Hs.920 NM_006673 ENSG00000196843 ARID5A MRF-1|MRF1|RP11-363D14 AT-rich interaction domain 5A protein-coding 280-2 chr1 67249594 67250172 + 0.833333 NA intron (NM_144701, intron 9 of 10) MER57-int|LTR|ERV1 -57481 NM_001258215 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 340.167-2 chr18 60193310 60194126 + 0.833333 NA Intergenic L1MA4A|LINE|L1 179057 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 132.5-44 chr2 35691076 35691370 + 0.833333 NA Intergenic L1MC5|LINE|L1 219818 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 115.167-20 chr10 89443962 89444122 + 0.833333 NA intron (NM_213606, intron 3 of 7) intron (NM_213606, intron 3 of 7) -11949 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 194.333-48 chr9 89640561 89640872 + 0.833333 NA intron (NR_024280, intron 1 of 5) intron (NR_024280, intron 1 of 5) 933 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 206-8 chr14 44793843 44794352 + 0.833333 NA intron (NR_146457, intron 2 of 4) intron (NR_146457, intron 2 of 4) 5029 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 152.333-2 chr1 172497859 172498077 + 0.833333 NA Intergenic MIR|SINE|MIR -34381 NM_016227 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 122.167-35 chr2 37611754 37612025 + 0.833333 NA Intergenic MIR|SINE|MIR 60310 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 177.5-16 chr11 112458809 112459210 + 0.833333 NA Intergenic L1MA8|LINE|L1 -23223 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 195.667-13 chr14 57220703 57221074 + 0.833333 NA intron (NM_006544, intron 13 of 17) intron (NM_006544, intron 13 of 17) 48017 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 120.333-67 chr21 28176689 28176952 + 0.833333 NA intron (NR_126012, intron 3 of 5) MER106B|DNA|hAT-Charlie 51847 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 192.333-58 chr9 78231569 78231959 + 0.833333 NA Intergenic L2c|LINE|L2 -4311 NM_001349839 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 188.333-27 chr18 51510632 51511014 + 0.833333 NA intron (NR_040074, intron 1 of 2) L1PB2|LINE|L1 118781 NR_040075 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 177.667-2 chr1 109868685 109869062 + 0.833333 NA Intergenic Intergenic -41976 NM_172210 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 227.833-12 chr3 179167111 179167570 + 0.833333 NA intron (NM_006218, intron 1 of 20) intron (NM_006218, intron 1 of 20) 18983 NM_006218 5290 Hs.553498 NM_006218 ENSG00000121879 PIK3CA CLAPO|CLOVE|CWS5|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha protein-coding 149-53 chr3 11790984 11791421 + 0.833333 NA intron (NM_138807, intron 6 of 6) L2b|LINE|L2 55683 NM_001284401 132001 Hs.475472 NM_138807 ENSG00000144559 TAMM41 C3orf31|RAM41|TAM41 TAM41 mitochondrial translocator assembly and maintenance homolog protein-coding 125.333-15 chr10 25612743 25613168 + 0.833333 NA Intergenic L1MA3|LINE|L1 -38757 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 275.667-9 chr15 80421419 80421807 + 0.833333 NA intron (NM_014862, intron 1 of 18) intron (NM_014862, intron 1 of 18) 17231 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 146.5-91 chr8 120824304 120824683 + 0.833333 NA Intergenic Intergenic -12447 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 273.833-4 chr18 33259993 33260543 + 0.833333 NA intron (NM_001308126, intron 14 of 23) L1ME3A|LINE|L1 180303 NM_001371121 293.5-13 chr9 34566316 34566911 + 0.833333 NA intron (NM_001207011, intron 3 of 9) intron (NM_001207011, intron 3 of 9) -1399 NR_024369 415056 Hs.734229 NR_024369 CNTFR-AS1 - CNTFR antisense RNA 1 ncRNA 156.5-32 chr14 60081372 60081710 + 0.833333 NA Intergenic L1MB4|LINE|L1 -10370 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 186.5-17 chr11 109327387 109327663 + 0.833333 NA Intergenic MLT1L|LTR|ERVL-MaLR -94665 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 142.667-77 chr5 25404643 25405005 + 0.833333 NA Intergenic Intergenic 213871 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 147-26 chr18 1456951 1457158 + 0.833333 NA Intergenic L1MA2|LINE|L1 -97425 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 197.167-11 chr14 35649311 35649631 + 0.833333 NA intron (NM_014990, intron 30 of 40) L2c|LINE|L2 113460 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 202.167-32 chr7 90947610 90947988 + 0.833333 NA intron (NM_012395, intron 7 of 13) intron (NM_012395, intron 7 of 13) 237983 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 150.333-26 chr12 2600684 2600895 + 0.833333 NA intron (NM_199460, intron 22 of 49).2 intron (NM_199460, intron 22 of 49).2 71431 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 229.833 chr1 92467170 92467598 + 0.833333 NA Intergenic Intergenic 16570 NM_001127215 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 124.333-46 chr2 102545775 102545950 + 0.833333 NA Intergenic L1M5|LINE|L1 72636 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 127.333-123 chrX 100611281 100611481 + 0.833333 NA Intergenic MER41A|LTR|ERV1 25425 NM_001278740 7105 Hs.43233 NM_003270 ENSG00000000003 TSPAN6 T245|TM4SF6|TSPAN-6 tetraspanin 6 protein-coding 167-20 chr12 46498125 46498499 + 0.833333 NA intron (NR_125380, intron 3 of 3) intron (NR_125380, intron 3 of 3) 114205 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 162.333-3 chr1 157607199 157607503 + 0.833333 NA Intergenic L1MA4|LINE|L1 -9266 NM_031282 83417 Hs.120260 NM_031282 ENSG00000163518 FCRL4 CD307d|FCRH4|IGFP2|IRTA1 Fc receptor like 4 protein-coding 128.833-3 chr1 55479840 55480046 + 0.833333 NA Intergenic MER34C_|LTR|ERV1 254302 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 174.667-33 chr2 78358365 78358656 + 0.833333 NA Intergenic (CTTT)n|Simple_repeat|Simple_repeat -67779 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 148-58 chr4 47759947 47760142 + 0.833333 NA intron (NM_006587, intron 4 of 21) Tigger1|DNA|TcMar-Tigger -71301 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 368.334 chr1 185134160 185135096 + 0.833333 NA intron (NM_030934, intron 10 of 14) intron (NM_030934, intron 10 of 14) 22325 NM_030934 81627 Hs.107149 NM_030934 ENSG00000121486 TRMT1L C1orf25|MST070|MSTP070|TRM1L|bG120K12.3 tRNA methyltransferase 1 like protein-coding 177.833-45 chr8 48583710 48584271 + 0.833333 NA intron (NR_105002, intron 2 of 3) intron (NR_105002, intron 2 of 3) 32423 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 113.833-76 chr6 46979664 46979808 + 0.833333 NA Intergenic Intergenic -24797 NM_015234 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 184.833-7 chr14 29181871 29182212 + 0.833333 NA Intergenic Intergenic -396254 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 177.333-51 chr5 73831935 73832258 + 0.833333 NA intron (NM_001244364, intron 1 of 27) intron (NM_001244364, intron 1 of 27) 18550 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 145-99 chr9 113892784 113893145 + 0.833333 NA intron (NM_001318042, intron 1 of 14) intron (NM_001318042, intron 1 of 14) 16655 NM_001318042 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 116-38 chr18 4807064 4807337 + 0.833333 NA Intergenic Intergenic -273982 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 163.333-85 chr9 35219526 35219953 + 0.833333 NA intron (NM_006377, intron 1 of 38) L1ME3Cz|LINE|L1 57730 NM_001330653 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 120.833-18 chr17 3279431 3279607 + 0.833333 NA promoter-TSS (NM_002551) promoter-TSS (NM_002551) -545 NM_002551 4995 Hs.647414 NM_002551 ENSG00000221882 OR3A2 OLFRA04|OR17-14|OR17-228|OR228 olfactory receptor family 3 subfamily A member 2 protein-coding 145.833-77 chr8 109566064 109566334 + 0.833333 NA TTS (NM_001278938) TTS (NM_001278938) 25573 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 139-9 chr12 116941083 116941380 + 0.833333 NA intron (NM_153348, intron 2 of 10) L3|LINE|CR1 30275 NM_012174 26259 Hs.624537 NM_012174 ENSG00000174989 FBXW8 FBW6|FBW8|FBX29|FBXO29|FBXW6 F-box and WD repeat domain containing 8 protein-coding 142.5-69 chr7 109571527 109571798 + 0.833333 NA Intergenic Intergenic 388551 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 182.167-33 chr5 110466185 110466598 + 0.833333 NA intron (NM_001039763, intron 12 of 13) intron (NM_001039763, intron 12 of 13) 47524 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 224.167-20 chr5 76002254 76002563 + 0.833333 NA Intergenic L1MB7|LINE|L1 -80975 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 151.333-50 chr2 180208907 180209099 + 0.833333 NA Intergenic L1MDa|LINE|L1 -201706 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 194.5-44 chr8 131025521 131025796 + 0.833333 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 15251 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 158.833-56 chr6 70493453 70494115 + 0.833333 NA intron (NM_020819, intron 10 of 20) AluSx1|SINE|Alu -73146 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 143.333-40 chr2 181778597 181778825 + 0.833333 NA Intergenic Intergenic -98046 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 249.5-37 chr9 30223126 30223498 + 0.833333 NA Intergenic L1MEf|LINE|L1 185142 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 124.833-57 chr22 42345893 42346177 + 0.833333 NA Intergenic MIRb|SINE|MIR 23173 NR_120595 102723775 Hs.335413 NR_120595 ENSG00000229891 LINC01315 C22orf32-1|lnc-C22orf32-1 long intergenic non-protein coding RNA 1315 ncRNA 168.5-65 chr8 56562578 56562802 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR -2867 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 160.167-38 chr22 27401920 27402173 + 0.833333 NA Intergenic L1MB5|LINE|L1 91395 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 185.167-4 chr10 92926428 92926764 + 0.833333 NA intron (NM_001319195, intron 8 of 21) AluJr4|SINE|Alu 78076 NM_019053 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 138.833-33 chr2 12532736 12533064 + 0.833333 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -183972 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 133.667-95 chr8 105821066 105821273 + 0.833333 NA intron (NR_125796, intron 2 of 7) L1MA1|LINE|L1 239334 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 170.333-76 chr9 85640066 85640319 + 0.833333 NA intron (NM_015239, intron 13 of 25) intron (NM_015239, intron 13 of 25) 101837 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 178.667-4 chr10 62972458 62972672 + 0.833333 NA Intergenic L1MEg|LINE|L1 -153398 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 176.333-3 chr1 118212043 118212370 + 0.833333 NA Intergenic L1MA3|LINE|L1 -26978 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 156.333-21 chr12 14753945 14754361 + 0.833333 NA Intergenic AluSz|SINE|Alu 16978 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 178.5-60 chr5 76939975 76940309 + 0.833333 NA Intergenic AluSc|SINE|Alu -12903 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 171.667-87 chr9 18249029 18249436 + 0.833333 NA Intergenic Intergenic -224921 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 141.5-59 chr3 59319544 59319899 + 0.833333 NA Intergenic Intergenic -269689 NM_001351533 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 171.667-85 chr8 83391319 83391610 + 0.833333 NA Intergenic Intergenic -12294 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 233.167-14 chr16 63076379 63076832 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR -1040167 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 157.833-52 chr5 8123356 8123592 + 0.833333 NA Intergenic Intergenic 254326 NR_157171 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 150.833-20 chr2 10316258 10316624 + 0.833333 NA intron (NM_134421, intron 1 of 5) intron (NM_134421, intron 1 of 5) 12741 NM_134421 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 142-90 chr8 58665069 58665397 + 0.833333 NA Intergenic L2b|LINE|L2 -5380 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 143.5-3 chr10 12041147 12041403 + 0.833333 NA intron (NM_080599, intron 1 of 21) intron (NM_080599, intron 1 of 21) 1534 NM_015542 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense mediated mRNA decay protein-coding 245.667-17 chr2 46762078 46762801 + 0.833333 NA 3' UTR (NM_144949, exon 2 of 2) 3' UTR (NM_144949, exon 2 of 2) -54229 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 268.667-16 chrX 62875552 62876023 + 0.833333 NA Intergenic L1P3|LINE|L1 475545 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 122.5-7 chr1 227142037 227142293 + 0.833333 NA intron (NM_001366019, intron 9 of 36) L2a|LINE|L2 176327 NM_001366010 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 222.167-29 chr5 115617777 115618116 + 0.833333 NA intron (NM_001164469, intron 2 of 3) AluSg|SINE|Alu 8090 NM_001164468 100302736 NM_001164468 ENSG00000251201 TMED7-TICAM2 MyD88-4|TICAM-2|TICAM2|TIRAP3|TIRP|TRAM TMED7-TICAM2 readthrough protein-coding 127.333-85 chr4 139617734 139618169 + 0.833333 NA Intergenic Intergenic -47817 NM_001204367 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 144.833-73 chr8 106767209 106767636 + 0.833333 NA intron (NM_139166, intron 1 of 1) intron (NM_139166, intron 1 of 1) 2822 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 149.833-38 chr5 34009649 34009858 + 0.833333 NA intron (NR_037951, intron 6 of 8) L1MA4A|LINE|L1 -1703 NM_014324 23600 Hs.508343 NM_014324 ENSG00000242110 AMACR AMACRD|CBAS4|P504S|RACE|RM alpha-methylacyl-CoA racemase protein-coding 121-71 chr5 110549975 110550163 + 0.833333 NA intron (NM_001039763, intron 11 of 13) L1MEd|LINE|L1 -36154 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 137.333-70 chr4 128937410 128937746 + 0.833333 NA intron (NM_144643, intron 17 of 20) intron (NM_144643, intron 17 of 20) 125734 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 143.667-49 chr17 55539485 55539768 + 0.833333 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat -117791 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 247.334-4 chr8 144201511 144202419 + 0.833333 NA intron (NM_001288814, intron 11 of 41) AluSx1|SINE|Alu 53320 NM_001288814 727957 Hs.443139 NM_032450 ENSG00000179832 MROH1 HEATR7A maestro heat like repeat family member 1 protein-coding 189.167-19 chr17 32166172 32166510 + 0.833333 NA intron (NM_001288755, intron 1 of 18) Tigger1|DNA|TcMar-Tigger -14770 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo 113.5-13 chr10 53327617 53327989 + 0.833333 NA Intergenic (TCTC)n|Simple_repeat|Simple_repeat -556103 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 214.333-28 chr20 48245975 48246324 + 0.833333 NA Intergenic Intergenic -113762 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 131.167-38 chr2 9128508 9128819 + 0.833333 NA Intergenic L1MEg|LINE|L1 -78102 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 168.167-44 chr5 26837418 26837736 + 0.833333 NA Intergenic Intergenic 201009 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 263-7 chr15 79400398 79400955 + 0.833333 NA intron (NM_001330376, intron 2 of 2) intron (NM_001330376, intron 2 of 2) -31840 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 124.333-32 chr14 69603336 69603549 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -8154 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 250.667-12 chr8 67992518 67993053 + 0.833333 NA intron (NM_024870, intron 1 of 39) intron (NM_024870, intron 1 of 39) 40739 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 155.833-39 chr3 43693831 43694142 + 0.833333 NA intron (NM_001365649, intron 1 of 6) intron (NM_001365649, intron 1 of 6) -2392 NM_001346469 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 233.333-28 chr20 59876459 59877120 + 0.833333 NA intron (NM_014258, intron 33 of 44) (AT)n|Simple_repeat|Simple_repeat 56848 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 132.667-53 chr2 162319840 162320120 + 0.833333 NA intron (NM_001330265, intron 2 of 8) intron (NM_001330265, intron 2 of 8) 998 NM_001330267 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 303-8 chr4 46497463 46498130 + 0.833333 NA Intergenic L1ME2|LINE|L1 -107668 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 216.333-45 chr7 26462407 26462917 + 0.833333 NA intron (NR_148500, intron 2 of 5) intron (NR_148500, intron 2 of 5) -63244 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 203.5-42 chr8 92595113 92595641 + 0.833333 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 60117 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 148.167-79 chr8 29255529 29255785 + 0.833333 NA intron (NM_015254, intron 1 of 39) L2|LINE|L2 7413 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 197.333-27 chr2 144983127 144983458 + 0.833333 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 315325 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 144-60 chr5 60417834 60418391 + 0.833333 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) -45449 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 129.667-70 chr3 168074083 168074335 + 0.833333 NA intron (NM_001308155, intron 1 of 14) MLT1F|LTR|ERVL-MaLR 21715 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 195.5-24 chr2 47134523 47134899 + 0.833333 NA intron (NM_001163561, intron 3 of 6) L1MC1|LINE|L1 20597 NM_173649 285051 Hs.531575 NM_173649 ENSG00000239605 STPG4 C2orf61|GSE sperm-tail PG-rich repeat containing 4 protein-coding 172.333-57 chr4 66456342 66456780 + 0.833333 NA Intergenic L1MA6|LINE|L1 179737 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 121.833-11 chr11 82371179 82371412 + 0.833333 NA intron (NR_120571, intron 1 of 7) L2b|LINE|L2 32618 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 357.5-3 chr4 30472235 30473013 + 0.833333 NA Intergenic Intergenic -247745 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 201.667-53 chr9 27410969 27411276 + 0.833333 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -113192 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 128.167-67 chr5 60412109 60412441 + 0.833333 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) -39612 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 122.833-46 chr2 114447831 114448103 + 0.833333 NA intron (NM_001321910, intron 1 of 26) intron (NM_001321910, intron 1 of 26) 5326 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 227.167-13 chr2 20030671 20030960 + 0.833333 NA Intergenic L1PA15|LINE|L1 -18147 NM_002381 4148 Hs.656199 NM_002381 ENSG00000132031 MATN3 DIPOA|EDM5|HOA|OADIP|OS2 matrilin 3 protein-coding 176.333-33 chr18 14079920 14080477 + 0.833333 NA non-coding (NR_033354, exon 4 of 6) non-coding (NR_033354, exon 4 of 6) 52237 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 137.5-67 chr4 36643367 36643637 + 0.833333 NA Intergenic Intergenic -1602 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 128.167-55 chr3 115576020 115576326 + 0.833333 NA Intergenic Intergenic -47337 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 209.333-14 chr2 19148333 19148675 + 0.833333 NA Intergenic L1M5|LINE|L1 -121533 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 393.5-3 chr7 43341525 43342364 + 0.833333 NA intron (NM_001287059, intron 4 of 27) intron (NM_001287059, intron 4 of 27) 180598 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 208.167-19 chr4 84241413 84241702 + 0.833333 NA intron (NR_125909, intron 5 of 8) intron (NR_125909, intron 5 of 8) 57612 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 177.167-11 chr17 53946106 53946400 + 0.833333 NA Intergenic MIRb|SINE|MIR 123326 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 174.167-37 chr7 35020424 35020666 + 0.833333 NA intron (NM_015283, intron 1 of 21) intron (NM_015283, intron 1 of 21) 16940 NM_001366673 23333 Hs.408623 NM_015283 ENSG00000173852 DPY19L1 - dpy-19 like C-mannosyltransferase 1 protein-coding 148.333-73 chr3 169350183 169350465 + 0.833333 NA intron (NM_001205194, intron 1 of 15) MIR3|SINE|MIR -97543 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 129-84 chr6 61701786 61702003 + 0.833333 NA intron (NR_146874, intron 7 of 13) MLT1J1-int|LTR|ERVL-MaLR 127764 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 170-43 chr20 42142658 42142959 + 0.833333 NA intron (NM_133170, intron 18 of 31) MER44A|DNA|TcMar-Tigger -524431 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 127.5-38 chr20 12681505 12681856 + 0.833333 NA Intergenic Intergenic 255283 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 185.833-22 chr3 489308 489726 + 0.833333 NA Intergenic MIRc|SINE|MIR -102588 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 194.667-27 chr2 77179461 77179755 + 0.833333 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 193643 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 215-27 chr4 174558419 174558772 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR -35697 NM_001145816 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 15-hydroxyprostaglandin dehydrogenase protein-coding 232.833-13 chr20 35842588 35843180 + 0.833333 NA intron (NM_016436, intron 3 of 17) intron (NM_016436, intron 3 of 17) 70869 NM_016436 51230 Hs.517044 NM_016436 ENSG00000025293 PHF20 C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP PHD finger protein 20 protein-coding 131.333 chr1 59965465 59965633 + 0.833333 NA Intergenic Intergenic -38751 NR_134982 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 181.5-18 chr13 113622762 113623094 + 0.833333 NA intron (NM_007111, intron 3 of 11) intron (NM_007111, intron 3 of 11) 35270 NM_000705 496 Hs.434202 NM_000705 ENSG00000186009 ATP4B ATP6B ATPase H+/K+ transporting subunit beta protein-coding 208.667-46 chr8 142689631 142690022 + 0.833333 NA Intergenic PABL_A-int|LTR|ERV1 9331 NM_005672 8000 Hs.652235 NM_005672 ENSG00000167653 PSCA PRO232 prostate stem cell antigen protein-coding 153.333-76 chr7 43090125 43090475 + 0.833333 NA Intergenic Intergenic -22347 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 128.167-65 chr5 40241785 40242107 + 0.833333 NA Intergenic Intergenic 189655 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 296.5-5 chr20 9780407 9780872 + 0.833333 NA intron (NM_177990, intron 1 of 9) A-rich|Low_complexity|Low_complexity 58437 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 263.833-8 chr21 30957555 30958032 + 0.833333 NA Intergenic Intergenic -76213 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 139.167-12 chr12 1158041 1158234 + 0.833333 NA intron (NR_027948, intron 7 of 19) HAL1b|LINE|L1 130389 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 119.5-22 chr11 126664837 126665083 + 0.833333 NA intron (NR_120533, intron 1 of 1) intron (NR_120533, intron 1 of 1) 8874 NR_120533 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 333.333-6 chr9 35947324 35947973 + 0.833333 NA Intergenic AluJb|SINE|Alu 10506 NM_019897 56656 Hs.553540 NM_019897 ENSG00000278889 OR2S2 OR37A|OST715 olfactory receptor family 2 subfamily S member 2 (gene/pseudogene) protein-coding 184.333-70 chr9 26801804 26802086 + 0.833333 NA Intergenic Intergenic 90857 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 252.167-14 chr7 18779108 18779620 + 0.833333 NA intron (NM_058176, intron 15 of 22) intron (NM_058176, intron 15 of 22) 270094 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 174.833-21 chr2 46735232 46735895 + 0.833333 NA intron (NM_144949, intron 1 of 1) L2c|LINE|L2 36268 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 125.5-58 chr4 35176479 35176667 + 0.833333 NA Intergenic Intergenic -906826 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 174.833-3 chr1 69364872 69365215 + 0.833333 NA Intergenic Intergenic -68212 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 184.5-26 chr2 77354909 77355176 + 0.833333 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 167334 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 187.333-46 chr22 34050429 34050696 + 0.833333 NA Intergenic MIRb|SINE|MIR -127674 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 136-84 chr9 301522 301817 + 0.833333 NA intron (NM_001193536, intron 3 of 46) L1PA16|LINE|L1 28621 NM_001193536 81704 Hs.132599 NM_203447 ENSG00000107099 DOCK8 HEL-205|MRD2|ZIR8 dedicator of cytokinesis 8 protein-coding 296.834-2 chr2 136745944 136746651 + 0.833333 NA Intergenic Intergenic -19248 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 263.333-10 chr14 99798284 99798856 + 0.833333 NA intron (NM_004434, intron 1 of 21) AluSx|SINE|Alu 5157 NM_001008707 2009 Hs.12451 NM_004434 ENSG00000066629 EML1 BH|ELP79|EMAP|EMAPL|HuEMAP EMAP like 1 protein-coding 281.667-11 chr3 118236481 118237052 + 0.833333 NA Intergenic Intergenic -405002 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 132.667-10 chr10 43795679 43796111 + 0.833333 NA Intergenic Intergenic -5478 NR_002726 10151 Hs.632956 NR_002726 HNRNPA3P1 D10S102|FBRNP|HNRPA3|HNRPA3P1 heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 pseudo 143.333-43 chr2 217193761 217194112 + 0.833333 NA Intergenic Intergenic -88797 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 257.167-14 chr7 28155026 28155580 + 0.833333 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -25154 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 271.5-17 chr4 1919749 1920087 + 0.833333 NA intron (NM_133334, intron 4 of 8) AluSc5|SINE|Alu 19292 NM_133334 7468 Hs.113876 NM_007331 ENSG00000109685 NSD2 KMT3F|KMT3G|MMSET|REIIBP|TRX5|WHS|WHSC1 nuclear receptor binding SET domain protein 2 protein-coding 185-39 chr5 19895229 19895704 + 0.833333 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) -9194 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 173.167-15 chr15 57671823 57672268 + 0.833333 NA intron (NR_104369, intron 11 of 12) L1ME2|LINE|L1 -34476 NM_001018102 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 160.5-60 chr8 58997201 58997562 + 0.833333 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 121766 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 124.333-100 chr8 83928564 83928762 + 0.833333 NA Intergenic L1M1|LINE|L1 -254124 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 128.333-116 chr8 81983946 81984156 + 0.833333 NA Intergenic L3|LINE|CR1 -141765 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 132.333-2 chr1 29285877 29286035 + 0.833333 NA intron (NM_133177, intron 14 of 30) MIR3|SINE|MIR 49434 NM_001195001 10076 Hs.19718 NM_005704 ENSG00000060656 PTPRU FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J protein tyrosine phosphatase receptor type U protein-coding 154.667-59 chr6 109715364 109715737 + 0.833333 NA intron (NM_014845, intron 2 of 22) intron (NM_014845, intron 2 of 22) 24329 NM_014845 9896 Hs.529959 NM_014845 ENSG00000112367 FIG4 ALS11|BTOP|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1 FIG4 phosphoinositide 5-phosphatase protein-coding 200-25 chr16 81825705 81826049 + 0.833333 NA intron (NM_002661, intron 2 of 32) L2a|LINE|L2 46586 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 166.667 chr1 53718768 53719118 + 0.833333 NA intron (NM_001367484, intron 2 of 10) intron (NM_001367484, intron 2 of 10) 15261 NM_147193 148979 Hs.306691 NM_147193 ENSG00000174332 GLIS1 - GLIS family zinc finger 1 protein-coding 178-46 chr5 115968568 115968866 + 0.833333 NA intron (NM_173800, intron 1 of 19) intron (NM_173800, intron 1 of 19) 6242 NM_173800 206338 Hs.98288 NM_173800 ENSG00000172901 LVRN APQ|AQPEP|TAQPEP laeverin protein-coding 182.5-34 chr4 133173805 133174284 + 0.833333 NA intron (NM_032961, intron 4 of 4) intron (NM_032961, intron 4 of 4) 24750 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 128-54 chr2 167532429 167532650 + 0.833333 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -286133 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 124.667-124 chr8 113985407 113985590 + 0.833333 NA Intergenic L1PA16|LINE|L1 -548559 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 205.167-38 chr8 56180069 56180547 + 0.833333 NA intron (NM_002655, intron 1 of 4) intron (NM_002655, intron 1 of 4) 30965 NM_001114635 5324 Hs.14968 NM_002655 ENSG00000181690 PLAG1 PSA|SGPA|ZNF912 PLAG1 zinc finger protein-coding 139.333-39 chr15 63711366 63711607 + 0.833333 NA intron (NM_003922, intron 24 of 77) intron (NM_003922, intron 24 of 77) -110659 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 188.667-40 chr4 83195300 83195637 + 0.833333 NA Intergenic LTR9B|LTR|ERV1 -80739 NM_016619 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 117.667-65 chr2 123760737 123760943 + 0.833333 NA Intergenic Intergenic 264334 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 169.5-5 chr10 15477865 15478180 + 0.833333 NA Intergenic Intergenic -106733 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 175.5-31 chr21 35178177 35178649 + 0.833333 NA Intergenic Intergenic -129115 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 162.333-18 chr14 27406289 27406625 + 0.833333 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -206131 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 150.167-13 chr13 114081975 114082308 + 0.833333 NA intron (NM_001320821, intron 1 of 25).2 intron (NM_001320821, intron 1 of 25).2 -4186 NM_001320822 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 218.5-29 chr6 53586757 53587151 + 0.833333 NA Intergenic FLAM_A|SINE|Alu -13679 NR_110840 101927136 Hs.509788 NR_110840 ENSG00000231683 LOC101927136 - uncharacterized LOC101927136 ncRNA 163.833-61 chr9 9923719 9923986 + 0.833333 NA intron (NM_002839, intron 5 of 45) intron (NM_002839, intron 5 of 45) 124460 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 142.167-54 chr22 22062769 22063093 + 0.833333 NA Intergenic L1M4|LINE|L1 -18997 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 211.833-15 chr22 33612887 33613314 + 0.833333 NA intron (NM_133642, intron 4 of 14) intron (NM_133642, intron 4 of 14) 91820 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 182.833-45 chr5 114870001 114870336 + 0.833333 NA Intergenic L1PA11|LINE|L1 -96755 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 236.833-9 chr2 181355441 181355985 + 0.833333 NA intron (NR_130784, intron 3 of 4) intron (NR_130784, intron 3 of 4) -50061 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 150.667-88 chr7 143297112 143297371 + 0.833333 NA intron (NM_032982, intron 6 of 10) intron (NM_032982, intron 6 of 10) 7653 NM_001224 835 Hs.368982 NM_001224 ENSG00000106144 CASP2 CASP-2|ICH1|NEDD-2|NEDD2|PPP1R57 caspase 2 protein-coding 169.333-39 chr2 133013719 133014030 + 0.833333 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 98317 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 148.167-56 chr4 92536584 92536979 + 0.833333 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 232382 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 173.333-67 chr7 140842229 140842536 + 0.833333 NA intron (NR_148928, intron 2 of 17) MIR|SINE|MIR 82547 NR_148928 673 Hs.324250 NM_004333 ENSG00000157764 BRAF B-RAF1|B-raf|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 155.167 chr1 114320083 114320366 + 0.833333 NA Intergenic Intergenic -166355 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 145.667-66 chr3 151503392 151503717 + 0.833333 NA Intergenic L1MEg|LINE|L1 -44845 NM_178822 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 275.167 chr1 217067907 217068463 + 0.833333 NA intron (NM_001243509, intron 1 of 8) intron (NM_001243509, intron 1 of 8) 8807 NM_001243507 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 210.167-14 chr2 34221670 34222026 + 0.833333 NA intron (NR_126403, intron 4 of 5) L2a|LINE|L2 154622 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 152.833-25 chr19 29144593 29145025 + 0.833333 NA Intergenic MER67B|LTR|ERV1 68342 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 215-40 chr8 15501003 15501423 + 0.833333 NA Intergenic L2c|LINE|L2 -38874 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 175.167-10 chr10 86122813 86123153 + 0.833333 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 141805 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 242-12 chr2 32424615 32424930 + 0.833333 NA intron (NM_016252, intron 10 of 73) AluSq|SINE|Alu 67744 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 162-18 chr12 61241178 61241713 + 0.833333 NA Intergenic L1ME1|LINE|L1 951394 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 250.333-23 chr8 129090665 129091254 + 0.833333 NA Intergenic MER50|LTR|ERV1 -124958 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 228.833-21 chr8 125807013 125807314 + 0.833333 NA Intergenic Intergenic 144034 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 121.5-100 chr7 126225601 126225865 + 0.833333 NA Intergenic THE1C|LTR|ERVL-MaLR 832451 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 123.833-61 chr7 55508860 55509163 + 0.833333 NA intron (NM_001321242, intron 2 of 4) AluJr|SINE|Alu 17869 NM_001321251 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 219.667-32 chr8 130414882 130415345 + 0.833333 NA intron (NM_001362925, intron 1 of 29) L2a|LINE|L2 28547 NM_001362924 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 235.833-16 chr5 39332115 39332594 + 0.833333 NA intron (NM_001737, intron 4 of 10) intron (NM_001737, intron 4 of 10) 32141 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 186.667-17 chr12 100604645 100604901 + 0.833333 NA intron (NM_001303130, intron 4 of 8) L1MA2|LINE|L1 11155 NM_001303131 283431 Hs.20575 NM_174942 ENSG00000139354 GAS2L3 G2L3 growth arrest specific 2 like 3 protein-coding 164-66 chr7 10018592 10018930 + 0.833333 NA Intergenic Kanga1a|DNA|TcMar-Tc2 384491 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 222.5-20 chr3 169340174 169340690 + 0.833333 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -107435 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 165.833-11 chr10 127514209 127514457 + 0.833333 NA Intergenic Intergenic -35016 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 178.5-56 chr4 114464812 114465098 + 0.833333 NA Intergenic Intergenic -133447 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 149.667-56 chr4 30807875 30808057 + 0.833333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 87597 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 152.333-27 chr18 62220632 62220901 + 0.833333 NA intron (NR_144409, intron 2 of 31) intron (NR_144409, intron 2 of 31) 33511 NR_144404 57614 Hs.465323 NM_020854 ENSG00000134444 RELCH HsT3308|HsT885|KIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 238.5-26 chr5 25568113 25568509 + 0.833333 NA Intergenic PABL_A-int|LTR|ERV1 377358 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 122.167-58 chr5 117108677 117108893 + 0.833333 NA Intergenic Intergenic -306727 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 169.167-21 chr18 6435882 6436172 + 0.833333 NA Intergenic L1M5|LINE|L1 -20768 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 184-33 chr3 62764285 62764632 + 0.833333 NA intron (NM_003716, intron 2 of 29) intron (NM_003716, intron 2 of 29) 110958 NM_183394 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 147.333-50 chr22 26816743 26816974 + 0.833333 NA Intergenic Intergenic -43353 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 193.167-25 chr2 224326605 224326986 + 0.833333 NA Intergenic Intergenic 75199 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 120.5-72 chr5 129663791 129664038 + 0.833333 NA intron (NM_133638, intron 15 of 22) intron (NM_133638, intron 15 of 22) -84180 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 191.833-14 chr2 138005168 138005620 + 0.833333 NA intron (NM_006895, intron 5 of 5) intron (NM_006895, intron 5 of 5) 40921 NM_006895 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 172.833-5 chr11 47723307 47723619 + 0.833333 NA intron (NM_001318339, intron 14 of 16) intron (NM_001318339, intron 14 of 16) -8094 NM_024783 79841 Hs.147377 NM_024783 ENSG00000165923 AGBL2 CCP2 ATP/GTP binding protein like 2 protein-coding 323.667-10 chr7 24833824 24834279 + 0.833333 NA intron (NM_015550, intron 15 of 22) intron (NM_015550, intron 15 of 22) 58570 NM_145322 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 174.833-19 chr2 14548255 14548510 + 0.833333 NA Intergenic L2a|LINE|L2 -84335 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 231.667-30 chr8 65101707 65102216 + 0.833333 NA Intergenic L1ME3B|LINE|L1 78379 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 132.833-70 chr9 85060613 85060871 + 0.833333 NA Intergenic Intergenic 354841 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 149-31 chr17 60333908 60334177 + 0.833333 NA intron (NM_032582, intron 2 of 33) Tigger2b_Pri|DNA|TcMar-Tigger 58091 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 158-39 chr5 35164542 35164852 + 0.833333 NA intron (NM_000949, intron 1 of 9) L2c|LINE|L2 -46575 NM_001204317 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 150.333-83 chr5 27930666 27930912 + 0.833333 NA Intergenic Intergenic 356876 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 196.333-16 chr2 18944690 18945078 + 0.833333 NA Intergenic Intergenic 82087 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 221.667-11 chr14 84053779 84054174 + 0.833333 NA Intergenic L1MCa|LINE|L1 -1217956 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 243-8 chr11 9428255 9428968 + 0.833333 NA promoter-TSS (NR_002962) promoter-TSS (NR_002962) -155 NR_002962 677808 Hs.689720 NR_002962 ENSG00000201998 SNORA23 ACA23 small nucleolar RNA, H/ACA box 23 snoRNA 144.333-69 chr5 77666321 77666548 + 0.833333 NA Intergenic Intergenic -27737 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 155-54 chr4 104750914 104751167 + 0.833333 NA Intergenic Intergenic -256146 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 184.833-2 chr1 215115153 215115445 + 0.833333 NA intron (NM_001017424, intron 2 of 6) intron (NM_001017424, intron 2 of 6) 32562 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 219-31 chr8 110109090 110109526 + 0.833333 NA Intergenic L1MA8|LINE|L1 -133537 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 299.667-7 chr19 51048402 51048916 + 0.833333 NA Intergenic LTR54B|LTR|ERV1 -13657 NM_001370126 43849 Hs.411572 NM_019598 ENSG00000186474 KLK12 KLK-L5|KLKL5 kallikrein related peptidase 12 protein-coding 275.833-10 chr9 101417075 101417476 + 0.833333 NA Intergenic Intergenic 18421 NM_001278240 7743 Hs.50123 NM_003452 ENSG00000136870 ZNF189 - zinc finger protein 189 protein-coding 141.833-41 chr7 3335568 3335894 + 0.833333 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 34479 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 114.167-29 chr14 49515414 49515766 + 0.833333 NA Intergenic L2c|LINE|L2 70790 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 209.167-15 chr17 63055079 63055351 + 0.833333 NA intron (NM_025185, intron 2 of 25) intron (NM_025185, intron 2 of 25) 88980 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 209.5-23 chr3 42190965 42191334 + 0.833333 NA intron (NM_001349247, intron 6 of 16) MIR|SINE|MIR 30956 NM_014965 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 141.5-78 chr6 86619539 86619708 + 0.833333 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat -317905 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 176.5-23 chr14 62950718 62951068 + 0.833333 NA intron (NM_139318, intron 6 of 10) intron (NM_139318, intron 6 of 10) 94565 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 224.834-2 chr1 208569918 208570482 + 0.833333 NA Intergenic L1PB1|LINE|L1 -158488 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 152.833-77 chrX 85662225 85662713 + 0.833333 NA Intergenic Intergenic -173311 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 209.167-14 chr17 56502471 56502814 + 0.833333 NA intron (NM_001370326, intron 20 of 20) intron (NM_001370326, intron 20 of 20) -91057 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 189.333-56 chr9 27232527 27232783 + 0.833333 NA Intergenic Intergenic 50138 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 122-67 chr5 68743345 68743576 + 0.833333 NA Intergenic Intergenic 286467 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 208.833-16 chr17 51466499 51466891 + 0.833333 NA Intergenic Intergenic 31268 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 205.5-37 chr6 38745859 38746279 + 0.833333 NA intron (NM_001371, intron 7 of 91) L1MC4a|LINE|L1 30758 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 212.833 chr10 93055713 93056056 + 0.833333 NA intron (NM_001319195, intron 20 of 21) intron (NM_001319195, intron 20 of 21) -4914 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 187.333-45 chr22 26835561 26836157 + 0.833333 NA Intergenic Intergenic -24352 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 163.167-7 chr12 58720627 58720941 + 0.833333 NA intron (NR_120452, intron 1 of 7) LTR80A|LTR|ERVL 60932 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 136.167-43 chr2 175152040 175152247 + 0.833333 NA intron (NR_045773, intron 1 of 13) intron (NR_045773, intron 1 of 13) 15566 NR_030630 100126350 NR_030630 ENSG00000215973 MIR933 MIRN933|hsa-mir-933|mir-933 microRNA 933 ncRNA 216.833-24 chrX 99460514 99460904 + 0.833333 NA Intergenic MamGypLTR2b|LTR|Gypsy 949564 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 215.833-16 chr3 154907767 154908196 + 0.833333 NA Intergenic L1M1|LINE|L1 -116143 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 149.333-7 chr1 109568480 109568745 + 0.833333 NA intron (NM_006496, intron 1 of 8) intron (NM_006496, intron 1 of 8) 19997 NM_006496 2773 Hs.73799 NM_006496 ENSG00000065135 GNAI3 87U6|ARCND1 G protein subunit alpha i3 protein-coding 211.667-16 chr18 11396218 11396636 + 0.833333 NA Intergenic Intergenic -58051 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 183.5-18 chr16 59084913 59085199 + 0.833333 NA Intergenic L1ME1|LINE|L1 -350740 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 113.5-88 chr8 82771067 82771256 + 0.833333 NA Intergenic Intergenic -140943 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 233.333-25 chr2 173970562 173970909 + 0.833333 NA Intergenic Intergenic -5033 NM_003111 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 175.167-2 chr1 81361586 81362210 + 0.833333 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 55503 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 113.167-2 chr1 86718374 86718557 + 0.833333 NA intron (NM_016009, intron 2 of 8) intron (NM_016009, intron 2 of 8) 13889 NM_001206652 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 207.167-29 chr8 86729959 86730524 + 0.833333 NA intron (NM_019098, intron 2 of 17) intron (NM_019098, intron 2 of 17) 13434 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 292.333-10 chr5 162287455 162287976 + 0.833333 NA Intergenic MIR|SINE|MIR 220073 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 304.333-9 chr5 124172088 124172787 + 0.833333 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 266083 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 253.5-21 chr5 156649827 156650225 + 0.833333 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -200269 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 130.167-49 chr3 114968137 114968405 + 0.833333 NA intron (NM_001348805, intron 3 of 10) intron (NM_001348805, intron 3 of 10) -67646 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 222-32 chr5 162166551 162166934 + 0.833333 NA Intergenic L1PA11|LINE|L1 99100 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 128.333-126 chrX 155047796 155048069 + 0.833333 NA intron (NM_023934, intron 3 of 4) intron (NM_023934, intron 3 of 4) 21088 NM_023934 65991 Hs.356050 NM_023934 ENSG00000165775 FUNDC2 DC44|HCBP6|HCC3|PD03104 FUN14 domain containing 2 protein-coding 151.667-61 chr4 135297612 135297891 + 0.833333 NA Intergenic Intergenic -174192 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 162-60 chr6 38024888 38025279 + 0.833333 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 205356 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 141.167-62 chr5 136159608 136159806 + 0.833333 NA intron (NM_001001420, intron 2 of 6) intron (NM_001001420, intron 2 of 6) -24817 NR_026763 9597 Hs.59666 NM_022001 ENSG00000164621 SMAD5-AS1 DAMS|SMAD5AS|SMAD5OS SMAD5 antisense RNA 1 ncRNA 283.333-6 chr3 83803070 83803831 + 0.833333 NA Intergenic Intergenic 1066125 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 134.5-61 chr5 111365267 111365511 + 0.833333 NA intron (NM_001323376, intron 2 of 8) L2a|LINE|L2 141005 NM_001323377 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 262.667-5 chr11 9872074 9872714 + 0.833333 NA intron (NM_030962, intron 17 of 39) L1PA11|LINE|L1 33252 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 118.333-118 chr8 130663585 130664014 + 0.833333 NA Intergenic L1M5|LINE|L1 -220125 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 297.833-3 chr17 42237276 42237655 + 0.833333 NA intron (NM_012448, intron 1 of 18) intron (NM_012448, intron 1 of 18) 38941 NM_012448 6777 Hs.595276 NM_012448 ENSG00000173757 STAT5B STAT5 signal transducer and activator of transcription 5B protein-coding 235.333-20 chr4 25622067 25622490 + 0.833333 NA Intergenic AluSz|SINE|Alu -33573 NM_006424 10568 Hs.479372 NM_006424 ENSG00000157765 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 member 2 protein-coding 208.833-6 chr10 131174174 131174597 + 0.833333 NA intron (NM_174937, intron 4 of 11) intron (NM_174937, intron 4 of 11) 79167 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 203.333-22 chr2 168023663 168023953 + 0.833333 NA intron (NM_013233, intron 14 of 17) intron (NM_013233, intron 14 of 17) -82664 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 173.167-18 chr19 37530631 37530862 + 0.833333 NA intron (NM_001013659, intron 5 of 7) LTR5_Hs|LTR|ERVK -18203 NR_038248 100507433 Hs.121283 NR_038247 ENSG00000267470 ZNF571-AS1 - ZNF571 antisense RNA 1 ncRNA 148-24 chr12 104889867 104890062 + 0.833333 NA intron (NM_032148, intron 5 of 11) MIR3|SINE|MIR 68326 NM_001352170 84102 Hs.577463 NM_032148 ENSG00000136052 SLC41A2 SLC41A1-L1 solute carrier family 41 member 2 protein-coding 218.833-19 chr20 13625004 13625311 + 0.833333 NA intron (NM_017714, intron 3 of 13) intron (NM_017714, intron 3 of 13) 13775 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 194-22 chr15 25161183 25161722 + 0.833333 NA intron (NR_146177, intron 61 of 147) intron (NR_146177, intron 61 of 147) -9271 NR_001291 338433 NR_001291 ENSG00000201831 SNORD115-1 HBII-52-1|RNHBII52 small nucleolar RNA, C/D box 115-1 snoRNA 183.167-31 chr3 52213490 52213872 + 0.833333 NA intron (NM_199166, intron 10 of 10) L1MB7|LINE|L1 12482 NM_017442 54106 Hs.87968 NM_017442 ENSG00000239732 TLR9 CD289 toll like receptor 9 protein-coding 165.333-8 chr10 110263237 110263589 + 0.833333 NA intron (NM_005962, intron 3 of 5) intron (NM_005962, intron 3 of 5) 37417 NM_005962 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 178.833-30 chr5 18057439 18057680 + 0.833333 NA Intergenic Intergenic 250285 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 367.5 chr1 155389311 155390353 + 0.833333 NA intron (NM_001366177, intron 7 of 27) L1MEb|LINE|L1 -43348 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 127-52 chr2 150513492 150513867 + 0.833333 NA Intergenic HAL1ME|LINE|L1 -25984 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 122.833-53 chr21 45647070 45647294 + 0.833333 NA intron (NM_001348240, intron 1 of 16) intron (NM_001348240, intron 1 of 16) 3457 NM_001348240 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 162.333-7 chr10 21049193 21049540 + 0.833333 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -124624 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 170.667-7 chr10 121329050 121329278 + 0.833333 NA Intergenic Intergenic 202150 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 119.833-16 chr10 36878499 36878825 + 0.833333 NA Intergenic Intergenic -247195 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 189-37 chr4 87264577 87265021 + 0.833333 NA Intergenic Intergenic 35784 NR_049891 100847027 NR_049891 ENSG00000263981 MIR5705 - microRNA 5705 ncRNA 175.833-32 chr3 84184272 84184654 + 0.833333 NA Intergenic Intergenic 685112 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 267.167-19 chr5 90215139 90215484 + 0.833333 NA intron (NR_120601, intron 3 of 5) LTR42|LTR|ERVL 74760 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 123.167-29 chr15 49931920 49932191 + 0.833333 NA intron (NR_073597, intron 15 of 26) intron (NR_073597, intron 15 of 26) 181324 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 130.333-7 chr1 224579223 224579476 + 0.833333 NA intron (NR_136293, intron 5 of 9) HAL1|LINE|L1 -36968 NM_001322305 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 299.5-6 chr2 86761881 86762357 + 0.833333 NA intron (NM_022780, intron 4 of 8) L1ME4a|LINE|L1 29595 NM_001768 925 Hs.85258 NM_001768 ENSG00000153563 CD8A CD8|Leu2|p32 CD8a molecule protein-coding 131.5-56 chr4 66153799 66154256 + 0.833333 NA Intergenic LTR1A2|LTR|ERV1 -122797 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 138.5-14 chr11 19509837 19510196 + 0.833333 NA TTS (NR_033989) TTS (NR_033989) -2787 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 160-56 chr4 63015932 63016191 + 0.833333 NA Intergenic Intergenic -854296 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 193.5-33 chr3 120632576 120632977 + 0.833333 NA intron (NM_000187, intron 13 of 13) intron (NM_000187, intron 13 of 13) 36440 NM_004547 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 226.333-19 chr2 41230016 41230442 + 0.833333 NA Intergenic L1MA4|LINE|L1 -647326 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 173.167-30 chr4 61246521 61246923 + 0.833333 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 44550 NM_001371342 236.833-2 chr10 105333961 105334492 + 0.833333 NA Intergenic Intergenic 486107 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 175.833-42 chr8 64811628 64811942 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL -13048 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 132.667-32 chr14 61407110 61407348 + 0.833333 NA intron (NM_006255, intron 2 of 13) Tigger18a|DNA|TcMar-Tigger 85786 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 245.833-10 chr2 115398661 115399057 + 0.833333 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 55044 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 221.833-6 chr16 81244255 81244688 + 0.833333 NA intron (NM_017429, intron 1 of 10) MER33|DNA|hAT-Charlie 5782 NM_017429 53630 Hs.212172 NM_017429 ENSG00000135697 BCO1 BCDO|BCDO1|BCMO|BCMO1|BCO beta-carotene oxygenase 1 protein-coding 149.5-40 chr22 41685847 41686142 + 0.833333 NA intron (NM_005008, intron 1 of 3) AluJo|SINE|Alu 2873 NM_001003796 4809 Hs.182255 NM_005008 ENSG00000100138 SNU13 15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1 small nuclear ribonucleoprotein 13 protein-coding 160.167-34 chr21 14194545 14194880 + 0.833333 NA intron (NM_001303000, intron 1 of 9) L1MB3|LINE|L1 12237 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 245-17 chr8 58455707 58456036 + 0.833333 NA Intergenic L2a|LINE|L2 44292 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 174.833-14 chr16 88625970 88626279 + 0.833333 NA intron (NM_001294340, intron 14 of 18) intron (NM_001294340, intron 14 of 18) -12448 NM_013278 27189 Hs.278911 NM_013278 ENSG00000124391 IL17C CX2|IL-17C interleukin 17C protein-coding 156.167-30 chr17 51281374 51281703 + 0.833333 NA intron (NM_016001, intron 9 of 13) L1MD1|LINE|L1 20992 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18 small subunit processome component protein-coding 150.167-15 chr14 57907198 57907389 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -41201 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 223.333-33 chr5 98876740 98877226 + 0.833333 NA intron (NM_001364113, intron 23 of 36) AluJb|SINE|Alu 49551 NM_001270 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 189.167-21 chr18 21021910 21022278 + 0.833333 NA intron (NM_005406, intron 11 of 32) intron (NM_005406, intron 11 of 32) 89719 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 224.333-12 chr15 65709738 65710077 + 0.833333 NA intron (NM_005848, intron 14 of 31) intron (NM_005848, intron 14 of 31) 9425 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 203.333-52 chr8 132722288 132722714 + 0.833333 NA intron (NM_001145153, intron 5 of 8) MIRc|SINE|MIR 38081 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 232.167-25 chr6 112210871 112211618 + 0.833333 NA intron (NM_001105206, intron 3 of 38) intron (NM_001105206, intron 3 of 38) -25352 NR_121193 101927640 Hs.510007 NR_121193 LOC101927640 - uncharacterized LOC101927640 ncRNA 240.5-6 chr2 162464755 162465186 + 0.833333 NA intron (NM_033272, intron 6 of 15) Charlie18a|DNA|hAT-Charlie 120602 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 116.5-74 chr6 52316882 52317175 + 0.833333 NA Intergenic AluSz|SINE|Alu -32286 NM_001366372 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 119.833-31 chr17 29425523 29425712 + 0.833333 NA intron (NM_025142, intron 1 of 17) AluJb|SINE|Alu 34692 NM_025142 57551 Hs.597434 NM_020791 ENSG00000160551 TAOK1 KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1 TAO kinase 1 protein-coding 244.833-8 chr2 117516347 117516769 + 0.833333 NA Intergenic Tigger3a|DNA|TcMar-Tigger -298133 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 126.167-12 chr10 44797366 44797625 + 0.833333 NA Intergenic Intergenic -113821 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 126.333-59 chr2 107717891 107718158 + 0.833333 NA Intergenic Intergenic -36088 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 131.167-67 chr5 149798683 149798991 + 0.833333 NA intron (NM_001172699, intron 1 of 10) MIRb|SINE|MIR 26897 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 118.167-47 chr4 66513241 66513419 + 0.833333 NA Intergenic Intergenic 236506 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 117.5-17 chr14 58761706 58761973 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR -66449 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 296.667 chr1 227908823 227909278 + 0.833333 NA Intergenic Intergenic 32633 NR_049806 100847072 NR_049806 ENSG00000264483 MIR5008 - microRNA 5008 ncRNA 143.833-12 chr17 42270825 42271032 + 0.833333 NA intron (NM_012448, intron 1 of 18) MIR|SINE|MIR 5478 NM_012448 6777 Hs.595276 NM_012448 ENSG00000173757 STAT5B STAT5 signal transducer and activator of transcription 5B protein-coding 123.833-32 chr2 101433488 101433660 + 0.833333 NA intron (NM_001367509, intron 4 of 13) intron (NM_001367509, intron 4 of 13) 41538 NM_001367508 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 155.333-15 chr10 94462054 94462344 + 0.833333 NA intron (NM_015188, intron 2 of 12) L1MEc|LINE|L1 59658 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 171.5-37 chr2 167388195 167388563 + 0.833333 NA Intergenic Intergenic 201007 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 146.167-11 chr12 79606341 79606538 + 0.833333 NA intron (NM_001354733, intron 4 of 4) intron (NM_001354733, intron 4 of 4) 84141 NM_001354732 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 159.167-21 chr15 60700846 60701139 + 0.833333 NA intron (NM_134261, intron 1 of 10) MER91A|DNA|hAT-Tip100 19423 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 129.167-79 chr8 40673056 40673269 + 0.833333 NA intron (NM_001135731, intron 4 of 5) intron (NM_001135731, intron 4 of 5) 224664 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 301.167-6 chr8 25175822 25176499 + 0.833333 NA Intergenic Intergenic -8529 NM_001322810 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 121.333-7 chr1 105451347 105451544 + 0.833333 NA Intergenic L1ME1|LINE|L1 167490 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 244.334-8 chr7 46154199 46154778 + 0.833333 NA Intergenic Intergenic -233216 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 187.5-52 chr8 120935859 120936129 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -123948 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 262.333-23 chr4 108155453 108156108 + 0.833333 NA intron (NM_001130713, intron 3 of 10) MIR3|SINE|MIR 11017 NM_001166119 51176 Hs.743478 NM_016269 ENSG00000138795 LEF1 LEF-1|TCF10|TCF1ALPHA|TCF7L3 lymphoid enhancer binding factor 1 protein-coding 225.5-10 chr11 32922637 32923102 + 0.833333 NA intron (NM_001076786, intron 1 of 12) L1ME1|LINE|L1 30058 NM_001076786 79832 Hs.369368 NM_024774 ENSG00000060749 QSER1 - glutamine and serine rich 1 protein-coding 173.5-51 chr6 164991205 164991581 + 0.833333 NA Intergenic Intergenic -169330 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 233.333-24 chr2 151930806 151931209 + 0.833333 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) 41045 NM_001330118 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 153.833-3 chr1 57612830 57613176 + 0.833333 NA intron (NM_001353980, intron 4 of 5) L2c|LINE|L2 -188082 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 117.167-95 chr8 124467956 124468212 + 0.833333 NA intron (NR_108047, intron 1 of 1) L1M5|LINE|L1 6270 NR_108048 101927612 Hs.633137 NR_108047 ENSG00000245149 RNF139-AS1 - RNF139 antisense RNA 1 (head to head) ncRNA 138.833-71 chr5 126564122 126564329 + 0.833333 NA intron (NM_001202404, intron 9 of 15) AluSx|SINE|Alu 30994 NM_001202404 501 Hs.483239 NM_001182 ENSG00000164904 ALDH7A1 ATQ1|EPD|PDE aldehyde dehydrogenase 7 family member A1 protein-coding 263.333-7 chr13 113903573 113903948 + 0.833333 NA intron (NM_001278674, intron 3 of 7) intron (NM_001278674, intron 3 of 7) 8657 NM_001278674 643365 Hs.127655 NM_001039767 LINC00452 LINC00453 long intergenic non-protein coding RNA 452 protein-coding 122.5-16 chr11 23414621 23414851 + 0.833333 NA Intergenic Intergenic 4454 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 165.5-40 chr3 84868207 84868627 + 0.833333 NA intron (NR_033860, intron 3 of 20) intron (NR_033860, intron 3 of 20) 1158 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 178.333-22 chr2 107550264 107550689 + 0.833333 NA intron (NR_146968, intron 2 of 2) L1MEd|LINE|L1 21057 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 199.5-4 chr1 226746574 226747044 + 0.833333 NA Intergenic Intergenic -7634 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 256.333-22 chr6 38381271 38381801 + 0.833333 NA intron (NM_052893, intron 7 of 11) L1MEd|LINE|L1 -100060 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 191.833-22 chr4 44129088 44129324 + 0.833333 NA Intergenic AluSz|SINE|Alu 112144 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 122.333-33 chr14 48427714 48428163 + 0.833333 NA Intergenic Intergenic -632924 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 208.333-19 chr17 62961576 62962047 + 0.833333 NA Intergenic Intergenic -4424 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 127.5-58 chr5 135756978 135757247 + 0.833333 NA intron (NM_001349335, intron 3 of 10) intron (NM_001349335, intron 3 of 10) 45963 NR_049867 100847082 NR_049867 ENSG00000265924 MIR5692C1 - microRNA 5692c-1 ncRNA 125.5-21 chr14 40198030 40198204 + 0.833333 NA Intergenic L1MEd|LINE|L1 -756594 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 122-7 chr10 16701735 16701990 + 0.833333 NA intron (NM_152724, intron 6 of 7) intron (NM_152724, intron 6 of 7) 115562 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 191-7 chr12 83144627 83144886 + 0.833333 NA Intergenic AluSz6|SINE|Alu 457601 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 219.167-18 chr3 102273013 102273452 + 0.833333 NA Intergenic L1PA14|LINE|L1 109527 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 120.833-3 chr1 237595121 237595385 + 0.833333 NA intron (NM_001035, intron 33 of 104) intron (NM_001035, intron 33 of 104) 124134 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 200-56 chr5 145130975 145131420 + 0.833333 NA Intergenic Intergenic 704145 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 163.333-88 chrM 10801 11349 + 0.833333 NA Intergenic Intergenic -3561 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 152-45 chr7 103536110 103536352 + 0.833333 NA intron (NM_005045, intron 45 of 64) intron (NM_005045, intron 45 of 64) -90024 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 241.333-3 chr1 161822865 161823307 + 0.833333 NA intron (NM_007348, intron 9 of 15) Charlie1a|DNA|hAT-Charlie 56766 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 235-3 chr1 159984231 159984808 + 0.833333 NA Intergenic Intergenic 23295 NR_038849 100505633 Hs.445045 NR_038849 ENSG00000224259 LINC01133 - long intergenic non-protein coding RNA 1133 ncRNA 233-9 chr14 83130242 83130755 + 0.833333 NA Intergenic Intergenic 487866 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 122-83 chr7 45220460 45220762 + 0.833333 NA Intergenic LTR37-int|LTR|ERV1 62820 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 132.833-11 chr10 123614024 123614372 + 0.833333 NA Intergenic Intergenic -52157 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 202.167-21 chr20 16582046 16582527 + 0.833333 NA Intergenic L1ME1|LINE|L1 -8838 NM_024704 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 216.833 chr1 38469084 38469551 + 0.833333 NA Intergenic Intergenic -5879 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 156-42 chr2 110772184 110772437 + 0.833333 NA intron (NM_001371254, intron 2 of 18) MER5B|DNA|hAT-Charlie 39737 NM_001371254 239.5-21 chr5 58443163 58443690 + 0.833333 NA Intergenic Intergenic 16660 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 150.333-53 chr2 23269785 23270045 + 0.833333 NA Intergenic L1MEc|LINE|L1 -115264 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 123.333-68 chr22 32463622 32463901 + 0.833333 NA Intergenic Intergenic -6375 NM_174932 254240 Hs.372939 NM_174932 ENSG00000184459 BPIFC BPIL2 BPI fold containing family C protein-coding 160.333-57 chr7 74101793 74102091 + 0.833333 NA intron (NM_001204426, intron 4 of 14) AluJo|SINE|Alu 8725 NM_001204426 3984 Hs.647035 NM_002314 ENSG00000106683 LIMK1 LIMK|LIMK-1 LIM domain kinase 1 protein-coding 203.5-46 chrX 151957249 151957671 + 0.833333 NA intron (NM_004961, intron 6 of 8) intron (NM_004961, intron 6 of 8) 1198 NR_029638 407009 NR_029638 ENSG00000284363 MIR224 MIRN224|miRNA224 microRNA 224 ncRNA 208.5-21 chr17 62389549 62389868 + 0.833333 NA intron (NM_001144933, intron 5 of 11) L1MC3|LINE|L1 9155 NM_173503 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 229.333-30 chr7 80602641 80602996 + 0.833333 NA intron (NM_001371080, intron 1 of 10) intron (NM_001371080, intron 1 of 10) 611 NM_001001547 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 184.833-36 chr8 90938641 90939018 + 0.833333 NA intron (NM_022351, intron 9 of 12) MLT1H|LTR|ERVL-MaLR 46248 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 117-18 chr11 63589993 63590158 + 0.833333 NA intron (NM_007069, intron 3 of 3) intron (NM_007069, intron 3 of 3) 24362 NM_007069 11145 Hs.502775 NM_007069 ENSG00000176485 PLAAT3 AdPLA|H-REV107|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3|PLA2G16|PLAAT-3 phospholipase A and acyltransferase 3 protein-coding 146-73 chr8 118474424 118474763 + 0.833333 NA intron (NM_001101676, intron 2 of 4) AluSq2|SINE|Alu -146408 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 146.833-38 chr3 49678014 49678362 + 0.833333 NA intron (NM_001640, intron 11 of 21) intron (NM_001640, intron 11 of 21) 3837 NM_001640 327 Hs.517969 NM_001640 ENSG00000164062 APEH AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH acylaminoacyl-peptide hydrolase protein-coding 155.667-86 chr9 12659401 12659858 + 0.833333 NA Intergenic L1MA2|LINE|L1 -33756 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 185.333-44 chr4 43632283 43632613 + 0.833333 NA Intergenic Intergenic -139905 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 117.833-25 chr14 37447647 37447826 + 0.833333 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 147513 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 217.667-23 chr2 112912672 112912988 + 0.833333 NA promoter-TSS (NM_014439) promoter-TSS (NM_014439) -141 NM_173203 27178 Hs.166371 NM_014439 ENSG00000125571 IL37 FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 interleukin 37 protein-coding 183.167-24 chr2 45981391 45981748 + 0.833333 NA intron (NM_005400, intron 5 of 14) intron (NM_005400, intron 5 of 14) -315838 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 116.333-7 chr1 80576888 80577101 + 0.833333 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) 41239 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 310.5-12 chr4 57023830 57024486 + 0.833333 NA intron (NM_001303269, intron 22 of 25) intron (NM_001303269, intron 22 of 25) 45262 NM_000938 5431 Hs.602757 NM_000938 ENSG00000047315 POLR2B POL2RB|RPB2|hRPB140 RNA polymerase II subunit B protein-coding 235-35 chr9 30255174 30255623 + 0.833333 NA Intergenic L1MB8|LINE|L1 153056 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 135.667-80 chr4 120087694 120087913 + 0.833333 NA Intergenic Intergenic -20955 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 123.167-20 chr11 98597770 98597979 + 0.833333 NA Intergenic Intergenic -423075 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 142.667-54 chr2 162609840 162610054 + 0.833333 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -158989 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 179-20 chr2 39710331 39710682 + 0.833333 NA intron (NM_152390, intron 3 of 3) G-rich|Low_complexity|Low_complexity 44589 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 192.833-13 chr13 59242143 59242412 + 0.833333 NA Intergenic Intergenic -770441 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 275.667-16 chr3 10540906 10541598 + 0.833333 NA intron (NM_001353564, intron 1 of 20) L1MD2|LINE|L1 -35666 NM_001330611 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 147.5-90 chr9 90269200 90269512 + 0.833333 NA Intergenic Intergenic 164133 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 159-12 chr10 91261890 91262168 + 0.833333 NA intron (NM_001256549, intron 7 of 9) intron (NM_001256549, intron 7 of 9) 41366 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 135.333-15 chr11 93790455 93790795 + 0.833333 NA exon (NM_004268, exon 3 of 12) exon (NM_004268, exon 3 of 12) 6343 NM_004268 9440 Hs.444931 NM_004268 ENSG00000042429 MED17 CRSP6|CRSP77|DRIP80|SRB4|TRAP80 mediator complex subunit 17 protein-coding 259.333 chr1 216504431 216504802 + 0.833333 NA 3' UTR (NM_001350122, exon 10 of 10) 3' UTR (NM_001350122, exon 10 of 10) -81168 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 216.833-18 chr3 183498629 183498957 + 0.833333 NA intron (NM_130446, intron 4 of 6) L2b|LINE|L2 44979 NR_145763 109617007 NR_145763 ENSG00000199363 SNORA63E - small nucleolar RNA, H/ACA box 63E snoRNA 180.833-16 chr16 1617607 1617937 + 0.833333 NA intron (NM_020825, intron 1 of 19) intron (NM_020825, intron 1 of 19) 3132 NM_020825 57585 Hs.603676 NM_020825 ENSG00000007545 CRAMP1 CRAMP1L|HN1L|TCE4 cramped chromatin regulator homolog 1 protein-coding 123.667-26 chr12 21667429 21667754 + 0.833333 NA Intergenic Intergenic -9736 NM_001315537 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 157.667-60 chr5 124878954 124879283 + 0.833333 NA Intergenic Intergenic -134006 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 282 chr1 30488019 30488566 + 0.833333 NA Intergenic (TGGTGA)n|Simple_repeat|Simple_repeat -230480 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 132.333-22 chr11 96969040 96969402 + 0.833333 NA Intergenic L2a|LINE|L2 460796 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 250.167-6 chr15 96259951 96260567 + 0.833333 NA intron (NR_125738, intron 2 of 4) intron (NR_125738, intron 2 of 4) -65787 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 203.833-25 chr8 78861410 78861693 + 0.833333 NA Intergenic L1MEd|LINE|L1 24022 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 196.833-16 chr3 178155712 178156204 + 0.833333 NA Intergenic Intergenic -263243 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 248.333-6 chr2 52477511 52478070 + 0.833333 NA Intergenic L1MD1|LINE|L1 107142 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 144.333-17 chr10 113846091 113846462 + 0.833333 NA intron (NM_001271816, intron 4 of 9) MIRc|SINE|MIR 7806 NM_014881 9937 Hs.1560 NM_014881 ENSG00000198924 DCLRE1A PSO2|SNM1|SNM1A DNA cross-link repair 1A protein-coding 177.5-67 chr5 158807509 158807918 + 0.833333 NA intron (NM_001324107, intron 8 of 15) intron (NM_001324107, intron 8 of 15) 290243 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 151.333-22 chr12 43416889 43417107 + 0.833333 NA intron (NM_025003, intron 28 of 38) L2b|LINE|L2 135205 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 119.5-19 chr11 73008472 73008760 + 0.833333 NA intron (NM_014824, intron 4 of 19) L2|LINE|L2 133702 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 126-62 chr4 28261686 28262136 + 0.833333 NA Intergenic Intergenic -557671 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 114.333-44 chr16 6697115 6697276 + 0.833333 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -76614 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 140.667-50 chr22 28330157 28330472 + 0.833333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -129555 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 136.167-70 chr7 77858583 77858913 + 0.833333 NA intron (NM_001366089, intron 2 of 18) intron (NM_001366089, intron 2 of 18) 18618 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 220.333-27 chr6 47056974 47057594 + 0.833333 NA Intergenic Intergenic -14952 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 206.667-39 chr5 76994128 76994423 + 0.833333 NA Intergenic Intergenic -36129 NM_018046 55109 Hs.634849 NM_018046 ENSG00000164252 AGGF1 GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q angiogenic factor with G-patch and FHA domains 1 protein-coding 147.833-2 chr1 61557578 61557862 + 0.833333 NA Intergenic Intergenic -96522 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 152.167-3 chr1 171742665 171742895 + 0.833333 NA promoter-TSS (NR_033704) promoter-TSS (NR_033704) -715 NM_001185127 8674 Hs.6651 NM_003762 ENSG00000117533 VAMP4 VAMP-4|VAMP24 vesicle associated membrane protein 4 protein-coding 234.167-4 chr14 65197087 65197561 + 0.833333 NA Intergenic L1MA2|LINE|L1 25023 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 133.5-6 chr1 195545212 195545614 + 0.833333 NA Intergenic Intergenic 543302 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 186.333-24 chr15 86121860 86122362 + 0.833333 NA intron (NM_152336, intron 1 of 24) intron (NM_152336, intron 1 of 24) -5394 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 194.167-7 chr11 64449869 64450171 + 0.833333 NA non-coding (NR_073177, exon 2 of 2) non-coding (NR_073177, exon 2 of 2) 963 NR_073177 100996455 Hs.634142 NR_073177 ENSG00000181908 LINC02724 - long intergenic non-protein coding RNA 2724 ncRNA 163-8 chr10 32838964 32839275 + 0.833333 NA intron (NM_001321115, intron 34 of 43) L1PB1|LINE|L1 62353 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 156.5-4 chr1 77319163 77319408 + 0.833333 NA intron (NM_012093, intron 5 of 13) LTR33|LTR|ERVL 36198 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 247.167-20 chr8 55353247 55353599 + 0.833333 NA intron (NM_052898, intron 1 of 2) MLT1C|LTR|ERVL-MaLR 101898 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 180-10 chr13 96951607 96951990 + 0.833333 NA intron (NR_051966, intron 2 of 2) LTR85a|LTR|Gypsy? 32374 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 113.167-63 chr6 52100018 52100178 + 0.833333 NA Intergenic L2b|LINE|L2 -12485 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 151.333-54 chr20 42323655 42324018 + 0.833333 NA intron (NM_133170, intron 11 of 31) L1MB7|LINE|L1 -361647 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 182.667-9 chr11 24022350 24022585 + 0.833333 NA Intergenic L1PA11|LINE|L1 -474586 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 180-28 chr20 18596347 18596584 + 0.833333 NA intron (NM_080820, intron 3 of 5) intron (NM_080820, intron 3 of 5) 8411 NM_080820 92675 Hs.659442 NM_080820 ENSG00000125821 DTD1 C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68 D-aminoacyl-tRNA deacylase 1 protein-coding 182.5-30 chr3 182940064 182940678 + 0.833333 NA 3' UTR (NM_001308101, exon 7 of 7) 3' UTR (NM_001308101, exon 7 of 7) 40167 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 255.333-29 chr9 24129303 24129740 + 0.833333 NA Intergenic L1PA15|LINE|L1 -278920 NM_001351456 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 216-21 chr3 81217125 81217608 + 0.833333 NA Intergenic Intergenic 223498 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 273.167-11 chr2 78104613 78105108 + 0.833333 NA intron (NR_110287, intron 3 of 5) L1MB4|LINE|L1 16130 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 117.667-75 chr3 66179559 66179734 + 0.833333 NA intron (NM_173471, intron 1 of 10) intron (NM_173471, intron 1 of 10) -41096 NR_028475 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 237.167-14 chr20 53764386 53764824 + 0.833333 NA Intergenic Intergenic 111104 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 243.5-24 chr5 143711674 143712167 + 0.833333 NA Intergenic AluSx|SINE|Alu 32060 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 198-9 chr10 45042856 45043311 + 0.833333 NA Intergenic L1MEf|LINE|L1 42160 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 215.5-19 chr2 48886772 48887069 + 0.833333 NA Intergenic Intergenic -131196 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 207.5-15 chr18 76641034 76641648 + 0.833333 NA Intergenic L1MA8|LINE|L1 -2330 NR_110784 101927651 Hs.569848 NR_110784 LINC01927 - long intergenic non-protein coding RNA 1927 ncRNA 310-5 chr17 59770720 59771265 + 0.833333 NA intron (NM_001329400, intron 4 of 9) L1MC5|LINE|L1 63338 NM_001329394 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 171.667 chr1 30051812 30052092 + 0.833333 NA Intergenic Intergenic -14340 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 255.5-15 chr3 82291615 82292530 + 0.833333 NA intron (NR_147146, intron 3 of 8) L2c|LINE|L2 305930 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 186.5-39 chr2 119938970 119939421 + 0.833333 NA intron (NM_002830, intron 15 of 26) intron (NM_002830, intron 15 of 26) -73882 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 175.833-26 chr2 210966658 210966870 + 0.833333 NA Intergenic Intergenic 349193 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 128.167-17 chr11 119138714 119138924 + 0.833333 NA Intergenic Intergenic -10233 NM_022169 64137 Hs.126378 NM_022169 ENSG00000172350 ABCG4 WHITE2 ATP binding cassette subfamily G member 4 protein-coding 244.833 chr10 105326453 105326815 + 0.833333 NA Intergenic L1MB2|LINE|L1 493699 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 178.667-52 chr5 32466972 32467602 + 0.833333 NA Intergenic Intergenic -22547 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 173.833-59 chr8 86392861 86393151 + 0.833333 NA intron (NM_007013, intron 5 of 24) L1M5|LINE|L1 50459 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 183.833-35 chr5 175242858 175243276 + 0.833333 NA Intergenic LTR84b|LTR|ERVL 201115 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 145.667-13 chr11 10609608 10609868 + 0.833333 NA exon (NM_001206881, exon 9 of 19) exon (NM_001206881, exon 9 of 19) -41073 NM_006691 10894 Hs.655332 NM_006691 ENSG00000133800 LYVE1 CRSBP-1|HAR|LYVE-1|XLKD1 lymphatic vessel endothelial hyaluronan receptor 1 protein-coding 255.167-6 chr20 56207154 56207573 + 0.833333 NA Intergenic Intergenic -41369 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 253-23 chr6 108830858 108831476 + 0.833333 NA Intergenic Intergenic -17249 NM_001286609 84071 Hs.645481 NM_032131 ENSG00000118690 ARMC2 SPGF38|bA787I22.1 armadillo repeat containing 2 protein-coding 208.833-8 chr12 130908964 130909502 + 0.833333 NA Intergenic L1MEc|LINE|L1 37167 NM_006325 5901 Hs.10842 NM_006325 ENSG00000132341 RAN ARA24|Gsp1|TC4 RAN, member RAS oncogene family protein-coding 132.833-17 chr12 10128752 10129268 + 0.833333 NA intron (NR_125336, intron 1 of 6) intron (NR_125336, intron 1 of 6) 1189 NM_197954 64581 Hs.143929 NM_022570 ENSG00000172243 CLEC7A BGR|CANDF4|CD369|CLECSF12|DECTIN1|SCARE2 C-type lectin domain containing 7A protein-coding 203.833-5 chr12 90322452 90322720 + 0.833333 NA Intergenic Intergenic 29268 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 191.333-36 chr7 9235686 9235966 + 0.833333 NA Intergenic L2a|LINE|L2 -398444 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 435.333-4 chr5 153588727 153589304 + 0.833333 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 96843 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 127.667-35 chr18 67742241 67742442 + 0.833333 NA intron (NR_033921, intron 1 of 4) L1PA10|LINE|L1 72481 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 325.333-2 chr10 25331489 25331984 + 0.833333 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -155460 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 132-12 chr10 51069117 51069362 + 0.833333 NA promoter-TSS (NR_120678) promoter-TSS (NR_120678) -687 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 129.167-69 chr6 55002573 55002935 + 0.833333 NA Intergenic L2a|LINE|L2 -103706 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 184.333-53 chr6 65686801 65687213 + 0.833333 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 20218 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 137.833-5 chr10 57170004 57170322 + 0.833333 NA Intergenic L1PA15|LINE|L1 134396 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 215.167-33 chr8 144555919 144556365 + 0.833333 NA intron (NM_025251, intron 2 of 10) AluY|SINE|Alu -27031 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 218-45 chr7 137812882 137813221 + 0.833333 NA intron (NM_001321708, intron 1 of 32) MamRTE1|LINE|RTE-BovB 33281 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 244.667-32 chr9 73280701 73281217 + 0.833333 NA Intergenic Intergenic 129094 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 200.667-12 chr11 27854228 27854554 + 0.833333 NA Intergenic Intergenic -132361 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 215.167-25 chr6 55432867 55433249 + 0.833333 NA Intergenic L2a|LINE|L2 105589 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 169.833-16 chr15 97612405 97612650 + 0.833333 NA Intergenic L1M1|LINE|L1 -51829 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 203.333 chr1 60952822 60953329 + 0.833333 NA TTS (NR_110618) TTS (NR_110618) 17701 NR_110618 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 144.5-62 chr4 29260904 29261103 + 0.833333 NA Intergenic Intergenic 46711 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 124.333-99 chr8 51444052 51444301 + 0.833333 NA intron (NM_144651, intron 12 of 22) Charlie1a|DNA|hAT-Charlie 365269 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 156.167-40 chr22 25868696 25868997 + 0.833333 NA intron (NM_001318245, intron 22 of 43) intron (NM_001318245, intron 22 of 43) 126658 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 148.333-34 chr15 51957275 51957601 + 0.833333 NA intron (NM_001323904, intron 6 of 11) intron (NM_001323904, intron 6 of 11) 14340 NM_001323904 123169 Hs.567662 NM_138792 ENSG00000166477 LEO1 RDL LEO1 homolog, Paf1/RNA polymerase II complex component protein-coding 144.667-88 chr7 4655877 4656270 + 0.833333 NA Intergenic Intergenic -26222 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 175.167-52 chr9 70920964 70921301 + 0.833333 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -52080 NM_024971 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 248.167-22 chr6 36042957 36043399 + 0.833333 NA intron (NM_139012, intron 1 of 11) intron (NM_139012, intron 1 of 11) 15370 NM_139013 1432 Hs.485233 NM_001315 ENSG00000112062 MAPK14 CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA mitogen-activated protein kinase 14 protein-coding 139.667-91 chr8 105779499 105779860 + 0.833333 NA TTS (NR_125797) TTS (NR_125797) 280824 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 157.833-33 chr18 61350446 61350788 + 0.833333 NA intron (NM_031891, intron 1 of 11) MLT1J2|LTR|ERVL-MaLR 17187 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 262-19 chr5 55848264 55848850 + 0.833333 NA Intergenic L1MC3|LINE|L1 -2800 NM_001242638 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 229.333-21 chr21 28605290 28605658 + 0.833333 NA Intergenic Intergenic 66156 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 285.5-19 chr9 68891303 68891677 + 0.833333 NA intron (NM_003558, intron 7 of 15) L1M5|LINE|L1 84351 NR_110647 101927069 Hs.663405 NR_110647 LOC101927069 - uncharacterized LOC101927069 ncRNA 220.667-32 chr5 113582456 113582906 + 0.833333 NA intron (NM_001345975, intron 24 of 28) intron (NM_001345975, intron 24 of 28) 68987 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 154.333-39 chr2 73381533 73381919 + 0.833333 NA Intergenic MER90a|LTR|ERV1 -4032 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 182.833-2 chr1 91469736 91470018 + 0.833333 NA Intergenic MSTC|LTR|ERVL-MaLR -30970 NM_001134419 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 233.667-20 chr5 39105774 39106260 + 0.833333 NA 3' UTR (NM_001349333, exon 20 of 20) 3' UTR (NM_001349333, exon 20 of 20) -31618 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 205.167-35 chr6 12604021 12604634 + 0.833333 NA Intergenic Intergenic -18923 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 144.667-57 chr2 226123242 226123432 + 0.833333 NA Intergenic Intergenic -19457 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 235-17 chr2 52845775 52846345 + 0.833333 NA Intergenic L1MB8|LINE|L1 -143445 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 160.834 chr13 94198266 94198811 + 0.833333 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) -10547 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 229.167-9 chr12 44852972 44853330 + 0.833333 NA intron (NM_006159, intron 3 of 20) intron (NM_006159, intron 3 of 20) 22510 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 128-42 chr19 52635636 52635832 + 0.833333 NA intron (NM_001348016, intron 1 of 3) AluSq|SINE|Alu 2657 NM_001277951 55769 Hs.467210 NM_018300 ENSG00000167766 ZNF83 HPF1|ZNF816B zinc finger protein 83 protein-coding 162.333-56 chr5 17268921 17269144 + 0.833333 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 51401 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 183.167-34 chr3 119793456 119793941 + 0.833333 NA intron (NM_022002, intron 1 of 8) MLT1D|LTR|ERVL-MaLR 10988 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 136.333-95 chr8 77771528 77771780 + 0.833333 NA Intergenic L1MA3|LINE|L1 320957 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 239.5-15 chr3 89533982 89534788 + 0.833333 NA Intergenic Intergenic 426764 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 159-31 chr18 4964726 4965070 + 0.833333 NA Intergenic L1MA2|LINE|L1 -116284 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 186.833-13 chr15 80302776 80303017 + 0.833333 NA intron (NR_033833, intron 1 of 2) L1PREC2|LINE|L1 38909 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 126.833-5 chr1 116107461 116107685 + 0.833333 NA Intergenic Intergenic -4182 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 114.667-20 chr12 26782872 26783143 + 0.833333 NA intron (NM_002223, intron 2 of 56) intron (NM_002223, intron 2 of 56) 50187 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 181.667-25 chr2 72865861 72866269 + 0.833333 NA Intergenic L1M4|LINE|L1 -21343 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase protein-coding 139-44 chr3 194455359 194455603 + 0.833333 NA intron (NM_001367549, intron 8 of 33) MIRc|SINE|MIR 12758 NM_024524 79572 Hs.529609 NM_024524 ENSG00000133657 ATP13A3 AFURS1 ATPase 13A3 protein-coding 121.167-50 chr22 22661844 22662022 + 0.833333 NA Intergenic Intergenic 15621 NM_199127 91227 Hs.450000 NM_080839 ENSG00000100121 GGTLC2 GGTL4 gamma-glutamyltransferase light chain 2 protein-coding 194-55 chr8 59923628 59924051 + 0.833333 NA Intergenic Intergenic 357561 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 260.667-11 chr2 80334790 80335293 + 0.833333 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 21662 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 215.833-9 chr19 11782574 11783125 + 0.833333 NA 3' UTR (NM_152355, exon 4 of 4) 3' UTR (NM_152355, exon 4 of 4) -15674 NM_152356 126069 Hs.631634 NM_152356 ENSG00000177599 ZNF491 - zinc finger protein 491 protein-coding 252.667-8 chr15 67276070 67276501 + 0.833333 NA intron (NM_001031715, intron 3 of 20) L1MDa|LINE|L1 -21087 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 184.833-19 chr21 19799574 19799801 + 0.833333 NA Intergenic Intergenic 100068 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 201.833-6 chr12 114391438 114391896 + 0.833333 NA intron (NM_000192, intron 6 of 8) MIR|SINE|MIR 14477 NM_181486 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 137.834-2 chr2 135554120 135554636 + 0.833333 NA intron (NM_001282799, intron 1 of 22) L1MB7|LINE|L1 22894 NM_001282799 23518 Hs.412462 NM_015361 ENSG00000048991 R3HDM1 R3HDM R3H domain containing 1 protein-coding 244.333-32 chr8 84548932 84549621 + 0.833333 NA intron (NM_001354308, intron 3 of 9) MER76|LTR|ERVL 133792 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 135.667-37 chr14 71653897 71654190 + 0.833333 NA intron (NM_001354286, intron 9 of 24) intron (NM_001354286, intron 9 of 24) 67745 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 260.333-16 chr6 19751558 19752246 + 0.833333 NA intron (NR_134651, intron 2 of 3) intron (NR_134651, intron 2 of 3) 52857 NR_134651 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 274-11 chr8 117261849 117262380 + 0.833333 NA Intergenic L2c|LINE|L2 127119 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 137.833-34 chr5 19160800 19161076 + 0.833333 NA Intergenic Intergenic 725334 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 161-46 chr4 74320652 74320926 + 0.833333 NA Intergenic Intergenic 12319 NM_001270993 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 171-5 chr1 218360056 218360347 + 0.833333 NA intron (NR_138148, intron 1 of 6) MER5A|DNA|hAT-Charlie -14523 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 TGFB2-AS1 - TGFB2 antisense RNA 1 (head to head) ncRNA 177.667-34 chr2 9848282 9848861 + 0.833333 NA intron (NM_001318976, intron 3 of 14) AluSp|SINE|Alu 5097 NM_005680 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 183-53 chr8 73494599 73494884 + 0.833333 NA intron (NM_001164383, intron 8 of 9) intron (NM_001164383, intron 8 of 9) 74667 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 128.333-37 chr14 68841213 68841508 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR -45117 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 133.667-86 chr7 19285959 19286178 + 0.833333 NA Intergenic Intergenic -140647 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 133.167-17 chr12 69025692 69025890 + 0.833333 NA Intergenic Intergenic -62551 NM_001874 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 191.5-3 chr1 166871067 166871457 + 0.833333 NA intron (NM_053053, intron 1 of 7) intron (NM_053053, intron 1 of 7) 5002 NM_053053 117143 Hs.435967 NM_053053 ENSG00000152382 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 157.833-11 chr11 37853688 37853982 + 0.833333 NA Intergenic Intergenic -84766 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 292.833-6 chr14 69735391 69735948 + 0.833333 NA Intergenic AluSq2|SINE|Alu -31473 NM_001039465 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 177.667-61 chr5 145884608 145884927 + 0.833333 NA Intergenic Intergenic -11799 NM_001080516 643226 Hs.570895 NM_001080516 ENSG00000204928 GRXCR2 DFNB101 glutaredoxin and cysteine rich domain containing 2 protein-coding 142.333-34 chr15 80216658 80216923 + 0.833333 NA intron (NM_001352888, intron 1 of 2) AluSz|SINE|Alu 35423 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 175.833-35 chr5 38718335 38718609 + 0.833333 NA intron (NR_104631, intron 1 of 4) MLT1N2|LTR|ERVL-MaLR 1801 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 272.333-13 chr18 47935035 47935707 + 0.833333 NA Intergenic Intergenic -4225 NM_001135937 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 123.667-29 chr12 76539453 76539691 + 0.833333 NA intron (NM_001319652, intron 1 of 25) intron (NM_001319652, intron 1 of 25) 20199 NM_001319652 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 134.333-36 chr14 74235062 74235399 + 0.833333 NA Intergenic Intergenic -4219 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 214.833-14 chr19 31072632 31073036 + 0.833333 NA Intergenic Intergenic -94676 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 242.667-4 chr10 34792407 34792951 + 0.833333 NA intron (NM_001184789, intron 1 of 22) intron (NM_001184789, intron 1 of 22) 22617 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 127.667-47 chr2 162909821 162910041 + 0.833333 NA Intergenic Intergenic -71164 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 151-11 chr12 39276403 39276685 + 0.833333 NA Intergenic Charlie5|DNA|hAT-Charlie 166576 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 156.5-73 chr6 52280293 52280661 + 0.833333 NA intron (NR_158964, intron 4 of 17) MIRb|SINE|MIR 4265 NM_001366370 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 186.167-38 chr7 68425683 68426033 + 0.833333 NA Intergenic ERVL-B4-int|LTR|ERVL 405605 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 146.167-44 chr4 73736883 73737107 + 0.833333 NA Intergenic Intergenic -3574 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 147.333-85 chr7 78095138 78095457 + 0.833333 NA intron (NM_001301128, intron 19 of 20) intron (NM_001301128, intron 19 of 20) -251945 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 247-16 chr5 109979746 109980093 + 0.833333 NA Intergenic L1ME3A|LINE|L1 96737 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 259.333-17 chr5 57028851 57029433 + 0.833333 NA Intergenic Intergenic -77012 NM_001297598 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 127-4 chr1 238367427 238367696 + 0.833333 NA Intergenic L1MC3|LINE|L1 118456 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 234.333-12 chr17 59502087 59502464 + 0.833333 NA intron (NR_110813, intron 2 of 2) AluJb|SINE|Alu 24582 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 289.5-14 chr7 82288613 82289199 + 0.833333 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 154871 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 170.667-12 chr12 87056997 87057324 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -218160 NM_001351285 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 152.833-54 chr5 23280607 23280928 + 0.833333 NA Intergenic Intergenic -226842 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 138-69 chr3 22094006 22094214 + 0.833333 NA Intergenic HAL1b|LINE|L1 136971 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 299.333-3 chr16 75186083 75186710 + 0.833333 NA Intergenic Intergenic 20765 NM_001025200 440387 Hs.610926 NM_001025200 ENSG00000168928 CTRB2 - chymotrypsinogen B2 protein-coding 222.833-16 chr3 114314532 114314799 + 0.833333 NA non-coding (NR_121662, exon 7 of 7) non-coding (NR_121662, exon 7 of 7) 1904 NR_030293 693153 NR_030293 ENSG00000284134 MIR568 MIRN568|hsa-mir-568 microRNA 568 ncRNA 161-72 chr7 96072864 96073156 + 0.833333 NA intron (NM_004411, intron 14 of 16) intron (NM_004411, intron 14 of 16) 146746 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 186.333 chr1 975189 975651 + 0.833333 NA 3' UTR (NM_001160184, exon 15 of 15) 3' UTR (NM_001160184, exon 15 of 15) 5753 NM_001369898 84808 Hs.271462 NM_032722 ENSG00000187642 PERM1 C1orf170 PPARGC1 and ESRR induced regulator, muscle 1 protein-coding 149.333-3 chr1 77725227 77725409 + 0.833333 NA intron (NM_015017, intron 12 of 24) L1ME1|LINE|L1 34534 NM_201626 23032 Hs.480597 NM_015017 ENSG00000077254 USP33 VDU1 ubiquitin specific peptidase 33 protein-coding 192.333-47 chr5 140371937 140372287 + 0.833333 NA intron (NM_001258428, intron 19 of 21) MIR|SINE|MIR 11918 NM_031467 83697 Hs.550313 NM_031467 ENSG00000113073 SLC4A9 AE4 solute carrier family 4 member 9 protein-coding 152.5-74 chr9 125461359 125461726 + 0.833333 NA intron (NM_001006619, intron 9 of 10) intron (NM_001006619, intron 9 of 10) 199716 NM_001282679 26130 Hs.42376 NM_015635 ENSG00000165219 GAPVD1 GAPEX5|GAPex-5|RAP6 GTPase activating protein and VPS9 domains 1 protein-coding 178.667-28 chr2 113085623 113085931 + 0.833333 NA Intergenic Intergenic 13459 NM_032556 84639 Hs.306974 NM_032556 ENSG00000136697 IL1F10 FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family member 10 protein-coding 138.333-47 chr17 28160540 28160822 + 0.833333 NA intron (NM_016231, intron 3 of 10) intron (NM_016231, intron 3 of 10) -65882 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 236.166-3 chr4 30448059 30448570 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -272055 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 151.167-38 chr5 36688398 36688742 + 0.833333 NA TTS (NM_001166695) TTS (NM_001166695) 81964 NM_001166695 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 149.833-51 chr7 47219819 47220021 + 0.833333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 244883 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 162-66 chr7 25867661 25867888 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -77655 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 217.333-22 chr3 84309570 84310031 + 0.833333 NA Intergenic L1ME3A|LINE|L1 559775 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 239-5 chr14 69755807 69756314 + 0.833333 NA Intergenic Intergenic -11082 NM_001039465 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 146.333-83 chr5 106728247 106728511 + 0.833333 NA Intergenic Intergenic 282635 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 165.167-36 chr4 42806728 42806998 + 0.833333 NA Intergenic Intergenic -86403 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 145.5-81 chr8 88411050 88411370 + 0.833333 NA Intergenic HERVL40-int|LTR|ERVL -83727 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 157.833-64 chr7 92328035 92328385 + 0.833333 NA intron (NM_019004, intron 5 of 19) intron (NM_019004, intron 5 of 19) -82110 NM_001350688 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 195.5-2 chr1 212010219 212010660 + 0.833333 NA intron (NM_015434, intron 5 of 19) L2|LINE|L2 -25114 NM_001286230 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 157.167-38 chr22 29230077 29230397 + 0.833333 NA intron (NM_001267895, intron 5 of 14) AluSz|SINE|Alu 24341 NM_001267895 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 114.167-40 chr18 3103499 3103696 + 0.833333 NA intron (NM_019856, intron 21 of 36) intron (NM_019856, intron 21 of 36) -91650 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 122-12 chr11 26175782 26176026 + 0.833333 NA Intergenic Intergenic -13219 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 134.5-67 chr7 17279601 17279958 + 0.833333 NA Intergenic Intergenic -18873 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 124-23 chr12 24176205 24176452 + 0.833333 NA intron (NM_152989, intron 4 of 17) AluJb|SINE|Alu -36093 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 231.167-24 chr5 20683962 20684389 + 0.833333 NA intron (NR_149120, intron 3 of 11) Tigger3b|DNA|TcMar-Tigger -68640 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 171-70 chr9 73985960 73986508 + 0.833333 NA Intergenic L1PA14|LINE|L1 -385297 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 157.333-51 chr3 154564080 154564344 + 0.833333 NA Intergenic L2|LINE|L2 -134022 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 244.5-26 chr8 56458424 56458821 + 0.833333 NA intron (NR_125813, intron 1 of 3) L1M4|LINE|L1 -11981 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 208.833-11 chr13 87818991 87819255 + 0.833333 NA Intergenic Intergenic -8603 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 136-63 chr5 32716796 32716977 + 0.833333 NA intron (NM_000908, intron 1 of 7) L1PA6|LINE|L1 5565 NM_000908 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 129.667-38 chr15 45698217 45698497 + 0.833333 NA Intergenic Intergenic -6838 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 165.5-37 chr3 17702060 17702428 + 0.833333 NA intron (NM_001349076, intron 1 of 22) intron (NM_001349076, intron 1 of 22) -2224 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 121-83 chr7 54737885 54738050 + 0.833333 NA Intergenic Intergenic 21244 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 224-26 chr20 41737003 41737315 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -118782 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 147-36 chr2 59817176 59817426 + 0.833333 NA Intergenic Intergenic 565735 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 192.667-2 chr1 83699844 83700211 + 0.833333 NA intron (NR_119375, intron 2 of 2) L2b|LINE|L2 160519 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 118.5-85 chr6 64427340 64427550 + 0.833333 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 620609 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 140.833-59 chr8 22206648 22206868 + 0.833333 NA intron (NR_033403, intron 16 of 19) intron (NR_033403, intron 16 of 19) 25341 NM_014759 9796 Hs.334688 NM_014759 ENSG00000168490 PHYHIP DYRK1AP3|PAHX-AP|PAHXAP1 phytanoyl-CoA 2-hydroxylase interacting protein protein-coding 162.5-13 chr11 79811498 79811756 + 0.833333 NA Intergenic Intergenic -370597 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 179.667-35 chr3 88958500 88958759 + 0.833333 NA Intergenic Intergenic -148992 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 116.5-55 chr3 103258835 103259054 + 0.833333 NA Intergenic L1ME1|LINE|L1 265172 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 218-42 chr6 139100997 139101430 + 0.833333 NA Intergenic Intergenic -33867 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 133.333-88 chr4 70270060 70270495 + 0.833333 NA Intergenic Intergenic 27661 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 120-73 chr3 88298851 88299107 + 0.833333 NA Intergenic Intergenic -39477 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 161.833-18 chr2 24583008 24583326 + 0.833333 NA intron (NM_001362955, intron 3 of 23) L1MA5|LINE|L1 -1310 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 117.167-55 chr21 10325039 10325453 + 0.833333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -88274 NM_001187 574 Hs.545789 NM_001187 BAGE BAGE1|CT2.1 B melanoma antigen protein-coding 162.5-67 chr6 164019986 164020267 + 0.833333 NA Intergenic Intergenic -348642 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 226.167-35 chrX 130981629 130981940 + 0.833333 NA Intergenic Helitron1Na_Mam|RC|Helitron 76362 NR_126350 104266960 Hs.573575 NR_126350 ENSG00000228659 LINC01201 TCONS_00017091 long intergenic non-protein coding RNA 1201 ncRNA 154-83 chr8 119065992 119066341 + 0.833333 NA intron (NR_134297, intron 1 of 1) intron (NR_134297, intron 1 of 1) -1081 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 364.5-6 chr2 104016134 104017199 + 0.833333 NA Intergenic L1ME3A|LINE|L1 391666 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 162.167-20 chr19 29051543 29052022 + 0.833333 NA Intergenic L1PA16|LINE|L1 49227 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 126.667-35 chr19 42564423 42564671 + 0.833333 NA intron (NR_073180, intron 2 of 2) intron (NR_073180, intron 2 of 2) 30377 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 181-33 chr2 29389274 29389635 + 0.833333 NA intron (NM_004304, intron 4 of 28) intron (NM_004304, intron 4 of 28) 85923 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 215.167-12 chr16 5782161 5782536 + 0.833333 NA Intergenic MLT1A1|LTR|ERVL-MaLR 149881 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 150 chr1 64371032 64371349 + 0.833333 NA Intergenic Intergenic -98939 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 259.5-5 chr15 25469452 25470162 + 0.833333 NA Intergenic Intergenic -30751 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 226.667-15 chr18 10417581 10417948 + 0.833333 NA Intergenic MER112|DNA|hAT-Charlie -3394 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 167.167-54 chr7 13361595 13362051 + 0.833333 NA Intergenic Intergenic 624691 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 152.833-49 chr4 78328173 78328524 + 0.833333 NA intron (NM_001166133, intron 18 of 41) intron (NM_001166133, intron 18 of 41) 39363 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 306.167-4 chr7 85841564 85842123 + 0.833333 NA Intergenic LTR101_Mam|LTR|ERVL 420721 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 125.167-52 chr3 34554719 34554954 + 0.833333 NA Intergenic HAL1ME|LINE|L1 756206 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 126.667-7 chr1 209959526 209959788 + 0.833333 NA intron (NM_001256006, intron 3 of 8) L1MB7|LINE|L1 21440 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 168.333-14 chr12 61432388 61432765 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL 760263 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 181.833-30 chr2 207129996 207130345 + 0.833333 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) 3967 NM_001270944 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 307-6 chr6 47452986 47453492 + 0.833333 NA Intergenic Intergenic -24550 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 165.833-5 chr1 182881825 182882029 + 0.833333 NA intron (NM_001357, intron 24 of 27) intron (NM_001357, intron 24 of 27) -42336 NR_148933 647070 Hs.191518 NR_148933 LOC647070 - uncharacterized LOC647070 ncRNA 202.833-17 chr3 7662103 7662568 + 0.833333 NA intron (NM_000844, intron 8 of 9) L1ME1|LINE|L1 -127051 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 210-11 chr17 63242708 63243128 + 0.833333 NA intron (NM_025185, intron 7 of 25) L1ME1|LINE|L1 197349 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 136.333-42 chr2 38169504 38169730 + 0.833333 NA intron (NR_027252, intron 2 of 2) MLT1K|LTR|ERVL-MaLR 38512 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 255.5-5 chr11 106143227 106143687 + 0.833333 NA Intergenic MER83B-int|LTR|ERV1 -11341 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 131-54 chr5 40343312 40343609 + 0.833333 NA Intergenic L1MB8|LINE|L1 291169 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 125.333-41 chr14 43406750 43407189 + 0.833333 NA Intergenic Intergenic 1100314 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 195.834-3 chr3 127980934 127981507 + 0.833333 NA intron (NM_001370224, intron 5 of 6) L1MC5a|LINE|L1 65988 NM_001370224 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 283.833-10 chrUn_KI270757v1 59810 60382 + 0.833333 NA NA ALR/Alpha|Satellite|centr NA NA 326.333-5 chr4 102336420 102337172 + 0.833333 NA intron (NM_022154, intron 1 of 7) intron (NM_022154, intron 1 of 7) 8395 NM_022154 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 241.167-4 chr2 67244029 67244364 + 0.833333 NA intron (NR_110568, intron 3 of 3) intron (NR_110568, intron 3 of 3) -28877 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 257.667-3 chr1 246437717 246438270 + 0.833333 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) -20581 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 239.333-16 chr3 104749820 104750229 + 0.833333 NA Intergenic Intergenic -616689 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 216.667-31 chr4 53508603 53509048 + 0.833333 NA intron (NM_001126328, intron 2 of 10) intron (NM_001126328, intron 2 of 10) 8748 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 135.5-76 chr8 101363755 101363939 + 0.833333 NA Intergenic AluSg|SINE|Alu -5046 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 151-82 chr8 141859426 141859670 + 0.833333 NA Intergenic Intergenic -73235 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 231.333-19 chr2 68300008 68300434 + 0.833333 NA intron (NM_015463, intron 2 of 2) L1ME3G|LINE|L1 19830 NM_015463 25927 Hs.212885 NM_015463 ENSG00000119865 CNRIP1 C2orf32|CRIP1 cannabinoid receptor interacting protein 1 protein-coding 229.167-36 chr8 129174218 129174597 + 0.833333 NA Intergenic MER63C|DNA|hAT-Blackjack 66833 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 387.667-3 chr5 65235628 65236217 + 0.833333 NA intron (NR_135689, intron 16 of 25) intron (NR_135689, intron 16 of 25) 245998 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 213.167-28 chr6 135570270 135570614 + 0.833333 NA intron (NR_152845, intron 2 of 4) ERV3-16A3_I-int|LTR|ERVL 72641 NR_152844 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 266-13 chr2 39127391 39127932 + 0.833333 NA Intergenic Intergenic -7198 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 296-4 chr12 64612550 64613307 + 0.833333 NA intron (NR_040718, intron 1 of 3) intron (NR_040718, intron 1 of 3) 2433 NR_040718 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 126.167-69 chr5 32771955 32772222 + 0.833333 NA intron (NM_001364460, intron 2 of 6) intron (NM_001364460, intron 2 of 6) 60767 NM_000908 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 133-48 chr2 120705896 120706128 + 0.833333 NA Intergenic Intergenic -29856 NM_001371271 131.5-28 chr16 8631051 8631208 + 0.833333 NA intron (NR_134608, intron 3 of 9) intron (NR_134608, intron 3 of 9) 9431 NR_134608 79091 Hs.306380 NM_024109 ENSG00000067365 METTL22 C16orf68 methyltransferase like 22 protein-coding 151.5-39 chr2 146699481 146699669 + 0.833333 NA Intergenic L1MA1|LINE|L1 112518 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 208.167-3 chr11 23307178 23307690 + 0.833333 NA Intergenic Intergenic 111756 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 190.333-16 chr14 55970056 55970436 + 0.833333 NA Intergenic (TATTA)n|Simple_repeat|Simple_repeat -148165 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 190.5-11 chr11 113086419 113086709 + 0.833333 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -123104 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 124-3 chr1 49466352 49466592 + 0.833333 NA intron (NR_046839, intron 2 of 3) intron (NR_046839, intron 2 of 3) 5613 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 154.333-30 chr17 56514330 56514578 + 0.833333 NA 3' UTR (NM_001365758, exon 21 of 21) 3' UTR (NM_001365758, exon 21 of 21) -79245 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 166-69 chr8 91261233 91261539 + 0.833333 NA intron (NM_134266, intron 2 of 18) intron (NM_134266, intron 2 of 18) 12067 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 214-30 chr3 190241767 190242148 + 0.833333 NA Intergenic L1PB1|LINE|L1 80489 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 216.833-15 chr2 125369682 125370095 + 0.833333 NA Intergenic Intergenic 748097 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 221-27 chr6 156140840 156141142 + 0.833333 NA Intergenic L1ME1|LINE|L1 194194 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 215.167-34 chrX 30857241 30857646 + 0.833333 NA intron (NM_152787, intron 5 of 10) intron (NM_152787, intron 5 of 10) 22820 NR_145449 727682 NR_145449 TAB3-AS1 CXorf29 TAB3 antisense RNA 1 ncRNA 192.833-32 chr7 11409200 11409677 + 0.833333 NA intron (NM_015204, intron 18 of 26) intron (NM_015204, intron 18 of 26) 422760 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 190.167-6 chr10 126247527 126247928 + 0.833333 NA intron (NM_001288974, intron 3 of 18) intron (NM_001288974, intron 3 of 18) 140750 NM_001288975 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 161.167-60 chr9 11863657 11863985 + 0.833333 NA Intergenic Intergenic -829564 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 114.833-15 chr12 44024317 44024527 + 0.833333 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 188341 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 114.667-39 chr18 616494 616693 + 0.833333 NA promoter-TSS (NM_001318522) promoter-TSS (NM_001318522) -79 NM_001318522 27098 Hs.732341 NM_014410 ENSG00000079101 CLUL1 RA337M clusterin like 1 protein-coding 170.167-48 chr7 18301997 18302377 + 0.833333 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 12095 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 202.667-2 chr1 46334949 46335522 + 0.833333 NA Intergenic L1M5|LINE|L1 -4942 NR_045789 387338 Hs.163424 NM_199044 ENSG00000117481 NSUN4 SHTAP NOP2/Sun RNA methyltransferase 4 protein-coding 148.167-60 chr5 26979854 26980082 + 0.833333 NA intron (NM_016279, intron 2 of 11) L1MEf|LINE|L1 58618 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 144-36 chr2 136747198 136747394 + 0.833333 NA Intergenic Intergenic -18249 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 118.667-3 chr1 45988573 45988801 + 0.833333 NA intron (NM_001324320, intron 5 of 29) L1MC3|LINE|L1 124339 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 166-50 chr5 84537057 84537409 + 0.833333 NA Intergenic Intergenic -152353 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 349.667-3 chr1 235297018 235297731 + 0.833333 NA intron (NR_135074, intron 2 of 24) L1MC5a|LINE|L1 30113 NM_001206794 51742 Hs.575782 NM_016374 ENSG00000054267 ARID4B BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 AT-rich interaction domain 4B protein-coding 165-38 chr3 192048638 192048935 + 0.833333 NA Intergenic L1MA3|LINE|L1 -189844 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 207.333-7 chr10 53788564 53789039 + 0.833333 NA Intergenic Intergenic -697429 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 127.5-61 chr6 92640234 92640447 + 0.833333 NA Intergenic L1PA5|LINE|L1 779219 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 121.5-16 chr10 66063316 66063561 + 0.833333 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 492013 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 138-101 chr7 82864363 82864674 + 0.833333 NA intron (NM_033026, intron 10 of 24) intron (NM_033026, intron 10 of 24) 298366 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 142-91 chr8 95582331 95582662 + 0.833333 NA intron (NR_038207, intron 2 of 2) intron (NR_038207, intron 2 of 2) -313295 NM_001363260 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 145.167-14 chr11 77258686 77259230 + 0.833333 NA intron (NM_182833, intron 10 of 16) intron (NM_182833, intron 10 of 16) 42708 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 184-37 chr3 166813230 166813571 + 0.833333 NA Intergenic Intergenic -85283 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 129.333-70 chr5 35860031 35860352 + 0.833333 NA intron (NR_120485, intron 1 of 5) intron (NR_120485, intron 1 of 5) 3300 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 131.333-19 chr11 91413096 91413371 + 0.833333 NA Intergenic L1MEf|LINE|L1 -544031 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 117-36 chr15 93623875 93624125 + 0.833333 NA Intergenic Intergenic -232560 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 131.333-61 chr20 53424033 53424489 + 0.833333 NA intron (NM_173485, intron 2 of 2) MER20|DNA|hAT-Charlie -128509 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 189.667-34 chr3 111706854 111707171 + 0.833333 NA intron (NM_001185106, intron 1 of 4) L1M2|LINE|L1 -25484 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 152.167-35 chr2 234753561 234754139 + 0.833333 NA Intergenic Intergenic 71182 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 196.833-2 chr1 93838789 93839115 + 0.833333 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -7880 NR_030621 100126348 NR_030621 ENSG00000211575 MIR760 MIRN760|hsa-mir-760|mir-760 microRNA 760 ncRNA 131-55 chr5 57482972 57483187 + 0.833333 NA promoter-TSS (NM_001017992) promoter-TSS (NM_001017992) -268 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 168.5-66 chr8 63653000 63653323 + 0.833333 NA Intergenic Intergenic -116269 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 250-26 chr8 109664949 109665495 + 0.833333 NA intron (NM_001099743, intron 1 of 7) MER33|DNA|hAT-Charlie 15744 NM_001099745 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 254.5-7 chr4 46171024 46171399 + 0.833333 NA Intergenic MIRb|SINE|MIR -47157 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 199.333-15 chr15 98058965 98059375 + 0.833333 NA Intergenic L1MD1|LINE|L1 29583 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 149.667-19 chr14 33965357 33965568 + 0.833333 NA Intergenic Intergenic -14388 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 119.833-75 chr6 46161456 46161632 + 0.833333 NA exon (NM_001290072, exon 5 of 5) exon (NM_001290072, exon 5 of 5) 9436 NM_001290072 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 187.5-36 chr4 56570168 56570588 + 0.833333 NA intron (NM_001256475, intron 4 of 8) Tigger3b|DNA|TcMar-Tigger 39772 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 151.333-69 chr4 120426797 120427097 + 0.833333 NA Intergenic Intergenic -360099 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 207.167-16 chr2 84037483 84037766 + 0.833333 NA Intergenic Intergenic -253058 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 157.833-69 chr8 113308705 113309039 + 0.833333 NA intron (NM_001363185, intron 2 of 66) intron (NM_001363185, intron 2 of 66) 68280 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 138.333-118 chrX 99328443 99328622 + 0.833333 NA Intergenic MER4-int|LTR|ERV1 1081741 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 188.833-17 chr16 61077262 61077713 + 0.833333 NA Intergenic Intergenic -21721 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 115.5-96 chr7 124932066 124932332 + 0.833333 NA intron (NR_125719, intron 1 of 7) intron (NR_125719, intron 1 of 7) -2216 NR_003104 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 134.333-13 chr10 55005072 55005241 + 0.833333 NA intron (NM_001354404, intron 3 of 34) FLAM_A|SINE|Alu -203865 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 241-23 chr8 134005405 134005733 + 0.833333 NA Intergenic Intergenic 119073 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 244.833-3 chr10 126838688 126839012 + 0.833333 NA Intergenic Intergenic -66559 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 179.667-52 chr8 50522467 50522904 + 0.833333 NA intron (NR_135797, intron 9 of 20) AluSg|SINE|Alu 358554 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 116.833-47 chr5 23196825 23197103 + 0.833333 NA Intergenic Intergenic -310645 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 209.667-40 chr9 116618363 116618773 + 0.833333 NA intron (NM_014010, intron 17 of 21) MIR|SINE|MIR 68647 NM_198186 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 152.833-57 chr5 144915980 144916260 + 0.833333 NA Intergenic Intergenic 710729 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 212.667-33 chr5 61593241 61593705 + 0.833333 NA Intergenic MLT2B4|LTR|ERVL -44287 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 121.667-100 chr8 76465638 76465850 + 0.833333 NA intron (NR_105006, intron 2 of 5) intron (NR_105006, intron 2 of 5) 59090 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 179.333-51 chr6 142923536 142923884 + 0.833333 NA intron (NM_006734, intron 1 of 9) MER45A|DNA|hAT-Tip100 21466 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 342.5-2 chr10 65569352 65570129 + 0.833333 NA Intergenic MER3|DNA|hAT-Charlie -1685 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 131.667-6 chr1 121503796 121504179 + 0.833333 NA Intergenic L1PA14|LINE|L1 -15125 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 153.5-11 chr10 73366505 73366741 + 0.833333 NA Intergenic LTR31|LTR|ERV1 -7759 NM_001367801 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 118.5-65 chr3 52580891 52581095 + 0.833333 NA intron (NM_001366074, intron 23 of 30) intron (NM_001366074, intron 23 of 30) 44388 NM_001124767 440957 Hs.660577 NM_001124767 ENSG00000168273 SMIM4 C3orf78 small integral membrane protein 4 protein-coding 291.833 chr10 71813761 71814229 + 0.833333 NA intron (NM_022124, intron 67 of 67) intron (NM_022124, intron 67 of 67) 2112 NM_001171935 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 132.167-53 chr4 122774578 122774795 + 0.833333 NA Intergenic L1ME4b|LINE|L1 41982 NM_152618 166379 Hs.400698 NM_152618 ENSG00000181004 BBS12 C4orf24 Bardet-Biedl syndrome 12 protein-coding 165.667-68 chr7 96200737 96200966 + 0.833333 NA intron (NM_001160210, intron 5 of 17) (CAACA)n|Simple_repeat|Simple_repeat 18905 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 159.167-48 chr4 56412084 56412447 + 0.833333 NA intron (NR_156493, intron 1 of 10) L2|LINE|L2 23350 NR_156493 5471 Hs.331420 NM_002703 ENSG00000128059 PPAT ATASE|GPAT|PRAT phosphoribosyl pyrophosphate amidotransferase protein-coding 163.5-61 chr5 84767198 84767442 + 0.833333 NA Intergenic Intergenic -382440 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 134.167-70 chr5 99900202 99900583 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL 366402 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 145.167-79 chr9 9689852 9690153 + 0.833333 NA intron (NM_002839, intron 7 of 45) L1MA4|LINE|L1 -109390 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 136.5-18 chr11 23837072 23837337 + 0.833333 NA Intergenic Intergenic -418014 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 157.333-44 chr21 46450812 46451079 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL -7946 NM_015151 23181 Hs.189585 NM_015151 ENSG00000160305 DIP2A C21orf106|DIP2 disco interacting protein 2 homolog A protein-coding 188.667-8 chr10 124304801 124305119 + 0.833333 NA Intergenic Intergenic 113963 NM_001322969 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 159.167-65 chr8 49987130 49987452 + 0.833333 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) 75884 NM_001321776 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 121.667-5 chr1 166807613 166807823 + 0.833333 NA Intergenic MLT1A1|LTR|ERVL-MaLR -31757 NM_001314014 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 270.833-16 chr3 187319577 187320095 + 0.833333 NA Intergenic Intergenic -27814 NM_001879 5648 Hs.89983 NM_001879 ENSG00000127241 MASP1 3MC1|CRARF|CRARF1|MAP1|MASP|MASP3|MAp44|PRSS5|RaRF mannan binding lectin serine peptidase 1 protein-coding 242.5-11 chr3 22816862 22817323 + 0.833333 NA Intergenic L1MB8|LINE|L1 385486 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 114.333-38 chr14 53494251 53494566 + 0.833333 NA Intergenic Intergenic 341054 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 219-10 chr16 80367888 80368308 + 0.833333 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -172636 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 180.333-13 chr11 12061406 12061861 + 0.833333 NA non-coding (NR_135109, exon 2 of 2) non-coding (NR_135109, exon 2 of 2) 30758 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 486 chr1 209956229 209957037 + 0.833333 NA intron (NM_001256006, intron 3 of 8) MLT1J2|LTR|ERVL-MaLR 18416 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 226.167-4 chr11 27215448 27215869 + 0.833333 NA intron (NR_125767, intron 2 of 4) intron (NR_125767, intron 2 of 4) 3110 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 145.833-4 chr1 106916543 106916729 + 0.833333 NA Intergenic Intergenic 98397 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 208.667-26 chr20 48962527 48962836 + 0.833333 NA intron (NM_006420, intron 6 of 38) intron (NM_006420, intron 6 of 38) 40970 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 232.167-27 chr8 116648838 116649391 + 0.833333 NA intron (NM_003756, intron 5 of 7) intron (NM_003756, intron 5 of 7) -2986 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 184.5-15 chr13 85689327 85689702 + 0.833333 NA Intergenic MIR|SINE|MIR 109905 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 408.5 chr1 79074509 79075184 + 0.833333 NA Intergenic MIR|SINE|MIR -68116 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 193.833-24 chr3 2305888 2306287 + 0.833333 NA intron (NM_001206955, intron 1 of 23) L1MB7|LINE|L1 67258 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 385.5-3 chr3 105336186 105336858 + 0.833333 NA Intergenic Intergenic -30191 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 186.667-42 chr2 193806512 193806948 + 0.833333 NA Intergenic MamGypsy2-I|LTR|Gypsy -537539 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 158.833-19 chr13 76201607 76201803 + 0.833333 NA Intergenic Intergenic -266573 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 116.833-5 chr10 55649344 55649526 + 0.833333 NA Intergenic Intergenic -21493 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 137.667-91 chr7 23054415 23054629 + 0.833333 NA Intergenic Intergenic -40392 NM_001363466 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 134.667-20 chr12 15267397 15267588 + 0.833333 NA Intergenic Intergenic -46075 NM_032918 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 185.167-24 chr20 63238318 63238757 + 0.833333 NA promoter-TSS (NR_036163) promoter-TSS (NR_036163) -242 NR_036163 100423014 NR_036163 ENSG00000266463 MIR3196 mir-3196 microRNA 3196 ncRNA 133.667-32 chr14 80084607 80084930 + 0.833333 NA Intergenic Intergenic -126651 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 174.667-35 chr2 186587769 186588107 + 0.833333 NA Intergenic Intergenic -2118 NM_002210 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 242.5-19 chr6 129073047 129073659 + 0.833333 NA intron (NM_000426, intron 3 of 64) L1MEg|LINE|L1 190212 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 224.667-10 chr14 45051053 45051353 + 0.833333 NA intron (NR_131765, intron 14 of 19) intron (NR_131765, intron 14 of 19) -32913 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 238.833-8 chr3 38690227 38690716 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -40784 NM_001354701 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 162.5-65 chr6 75141855 75142166 + 0.833333 NA intron (NM_080645, intron 12 of 50) intron (NM_080645, intron 12 of 50) -13228 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 187-3 chr1 82112933 82113293 + 0.833333 NA Intergenic MIRb|SINE|MIR 310660 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 157.667-55 chr4 149016089 149016414 + 0.833333 NA Intergenic (TTA)n|Simple_repeat|Simple_repeat -73873 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 214.5-2 chr1 235951762 235952187 + 0.833333 NA Intergenic Intergenic -68261 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 201.333-39 chr7 109411118 109411556 + 0.833333 NA Intergenic Intergenic -526750 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 176.5-68 chr9 81381876 81382396 + 0.833333 NA Intergenic Intergenic 307399 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 173.833-42 chr4 176920807 176921272 + 0.833333 NA Intergenic Intergenic 45337 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 250.833-12 chr8 110299877 110300211 + 0.833333 NA Intergenic Intergenic -324273 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 124.167-81 chr7 11560833 11561087 + 0.833333 NA intron (NM_015204, intron 4 of 26) MIR|SINE|MIR 271238 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 126-38 chr19 13651507 13651828 + 0.833333 NA Intergenic MLT1G3|LTR|ERVL-MaLR -80085 NM_001320567 81576 Hs.24998 NM_030818 ENSG00000104957 CCDC130 - coiled-coil domain containing 130 protein-coding 145.167-50 chr3 193710100 193710574 + 0.833333 NA Intergenic Intergenic -83005 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 137.167-24 chr17 34821451 34821794 + 0.833333 NA Intergenic L3b|LINE|CR1 139838 NM_006584 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 204.5-7 chr11 34128859 34129301 + 0.833333 NA intron (NM_001144030, intron 10 of 26) L1ME1|LINE|L1 23451 NM_001144030 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|Kre33|NET43 N-acetyltransferase 10 protein-coding 114-31 chr12 26143575 26143820 + 0.833333 NA Intergenic Intergenic -18660 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 135.833-33 chr2 79133143 79133513 + 0.833333 NA Intergenic ERVL47-int|LTR|ERVL 5099 NR_002714 5969 Hs.584797 NR_002714 REG1CP REG1P|REGL|RS regenerating family member 1 gamma, pseudogene pseudo 143.167-43 chr20 34557426 34557745 + 0.833333 NA intron (NM_181509, intron 2 of 4) L1MEd|LINE|L1 -1133 NM_032514 84557 Hs.632273 NM_032514 ENSG00000101460 MAP1LC3A ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3 microtubule associated protein 1 light chain 3 alpha protein-coding 136.5-35 chr14 69286650 69286869 + 0.833333 NA intron (NM_020692, intron 1 of 15) L1ME2z|LINE|L1 26601 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 120.167-4 chr1 212043117 212043336 + 0.833333 NA intron (NM_016448, intron 2 of 14) intron (NM_016448, intron 2 of 14) 7478 NM_016448 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 247.5-26 chr7 30377330 30377878 + 0.833333 NA Intergenic MamGypLTR2c|LTR|Gypsy 7554 NR_002186 222161 Hs.112423 NR_002186 DKFZP586I1420 - uncharacterized protein DKFZp586I1420 pseudo 204-38 chr8 139528845 139529128 + 0.833333 NA Intergenic Intergenic 174137 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 124.833-90 chr9 118617629 118617897 + 0.833333 NA Intergenic MLT1M|LTR|ERVL-MaLR -61908 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 282-3 chr1 226146446 226147091 + 0.833333 NA exon (NM_022735, exon 8 of 8) exon (NM_022735, exon 8 of 8) -1235 NR_146443 107985353 Hs.735455 NR_146443 ENSG00000234478 ACBD3-AS1 - ACBD3 antisense RNA 1 ncRNA 157.5-45 chr4 55556412 55556616 + 0.833333 NA TTS (NM_152401) TTS (NM_152401) -9605 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 223-10 chr15 63538768 63539188 + 0.833333 NA intron (NM_006537, intron 3 of 14) intron (NM_006537, intron 3 of 14) 34385 NR_046341 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 193.333-28 chr2 58084667 58085169 + 0.833333 NA exon (NM_006296, exon 4 of 13) exon (NM_006296, exon 4 of 13) 38206 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 159.833-56 chr8 143299784 143300180 + 0.833333 NA TTS (NM_030895) TTS (NM_030895) 8565 NM_030895 79943 Hs.512740 NM_030895 ENSG00000185730 ZNF696 - zinc finger protein 696 protein-coding 134.833-60 chr7 103699648 103700004 + 0.833333 NA intron (NM_005045, intron 9 of 64) intron (NM_005045, intron 9 of 64) -253619 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 115.5-40 chr15 74605772 74606005 + 0.833333 NA Intergenic MIRb|SINE|MIR -2484 NM_003992 1198 Hs.511790 NM_001292 ENSG00000179335 CLK3 PHCLK3|PHCLK3/152 CDC like kinase 3 protein-coding 149.833-3 chr10 23575789 23576067 + 0.833333 NA Intergenic Intergenic -118799 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 214.667-15 chr17 60229405 60229696 + 0.833333 NA intron (NM_032582, intron 12 of 33) Tigger10|DNA|TcMar-Tigger 2095 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 231.333-15 chr17 82628361 82628906 + 0.833333 NA intron (NM_019613, intron 3 of 9) AluJr|SINE|Alu 19811 NM_019613 56270 Hs.132161 NM_019613 ENSG00000141580 WDR45B NEDSBAS|WDR45L|WIPI-3|WIPI3 WD repeat domain 45B protein-coding 119.333-107 chr8 62348163 62348352 + 0.833333 NA intron (NM_001304533, intron 1 of 6) L3|LINE|CR1 99403 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 207.333-36 chr5 9988680 9989076 + 0.833333 NA Intergenic Intergenic -85054 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 140.333-3 chr1 53965738 53965916 + 0.833333 NA intron (NM_001256409, intron 7 of 8) intron (NM_001256409, intron 7 of 8) 19477 NM_052940 115353 Hs.40094 NM_052940 ENSG00000116212 LRRC42 dJ167A19.4 leucine rich repeat containing 42 protein-coding 175.833-41 chr7 109111541 109111808 + 0.833333 NA Intergenic Intergenic -227087 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 247.333-15 chr3 169303352 169303748 + 0.833333 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -144317 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 193.167-40 chr9 37365939 37366219 + 0.833333 NA Intergenic L2b|LINE|L2 -56617 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 180.167-56 chr8 71283621 71284088 + 0.833333 NA intron (NM_001370336, intron 10 of 17) intron (NM_001370336, intron 10 of 17) 72852 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 156.667-4 chr1 108862184 108862396 + 0.833333 NA Intergenic Intergenic -4046 NR_049760 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 150.833-51 chr8 119153966 119154270 + 0.833333 NA Intergenic Intergenic -54245 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 169.167-26 chr2 151936903 151937193 + 0.833333 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) 35004 NM_001330118 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 163.333-51 chr3 143128111 143128470 + 0.833333 NA Intergenic Intergenic 8519 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 163.5-55 chr5 10265323 10265552 + 0.833333 NA 3' UTR (NM_001306153, exon 11 of 11) 3' UTR (NM_001306153, exon 11 of 11) 14900 NM_001306155 22948 Hs.1600 NM_012073 ENSG00000150753 CCT5 CCT-epsilon|CCTE|HEL-S-69|PNAS-102|TCP-1-epsilon chaperonin containing TCP1 subunit 5 protein-coding 160.833-8 chr10 72856112 72856384 + 0.833333 NA intron (NM_138357, intron 2 of 7) L1ME1|LINE|L1 -37491 NM_152635 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 117-74 chr4 31330511 31330785 + 0.833333 NA Intergenic Tigger5b|DNA|TcMar-Tigger 159504 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 159.833-55 chr8 139885165 139885443 + 0.833333 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -182181 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 302.167-11 chr6 137188543 137189278 + 0.833333 NA Intergenic AluSq2|SINE|Alu -15266 NM_181310 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 125-82 chr7 32006509 32006686 + 0.833333 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 63810 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 188.333-47 chr5 61657839 61658145 + 0.833333 NA intron (NR_126524, intron 2 of 3) intron (NR_126524, intron 2 of 3) 20211 NR_126523 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 168.667-84 chr8 120750313 120750550 + 0.833333 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -10822 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 195.667-24 chr2 102896570 102896958 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -1042 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 171.833-37 chr5 4508617 4508923 + 0.833333 NA Intergenic L1MD|LINE|L1 -264711 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 120-18 chr11 78550827 78551052 + 0.833333 NA intron (NR_120566, intron 2 of 3) L1MB7|LINE|L1 17763 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 192.333-15 chr17 82460676 82461076 + 0.833333 NA intron (NM_001083608, intron 2 of 9) intron (NM_001083608, intron 2 of 9) 2135 NM_001083608 26502 Hs.256526 NM_012336 ENSG00000141562 NARF IOP2 nuclear prelamin A recognition factor protein-coding 158.833-20 chr14 56701724 56701933 + 0.833333 NA Intergenic L1MD1|LINE|L1 103839 NM_172337 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 170.833-9 chr13 20546683 20547048 + 0.833333 NA Intergenic LTR78|LTR|ERV1 -20292 NM_001353578 8100 Hs.187376 NM_006531 ENSG00000032742 IFT88 D13S1056E|DAF19|TG737|TTC10|hTg737 intraflagellar transport 88 protein-coding 159-14 chr11 46013926 46014264 + 0.833333 NA intron (NR_147890, intron 5 of 18) L1PA17|LINE|L1 91439 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 181.833-10 chr12 8879860 8880179 + 0.833333 NA Intergenic L2c|LINE|L2 -34490 NM_004426 1911 Hs.744902 NM_004426 ENSG00000111752 PHC1 EDR1|HPH1|MCPH11|RAE28 polyhomeotic homolog 1 protein-coding 158.667-99 chrX 125383041 125383354 + 0.833333 NA Intergenic L1MA6|LINE|L1 63326 NM_001195272 100129520 NM_001195272 ENSG00000282815 TEX13C - TEX13 family member C protein-coding 225.833-7 chr14 70370877 70371307 + 0.833333 NA 3' UTR (NM_018373, exon 4 of 4) 3' UTR (NM_018373, exon 4 of 4) -11409 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 191.667-46 chr5 144697826 144698085 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR 492564 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 195.667-9 chr11 84006709 84007028 + 0.833333 NA intron (NM_001142699, intron 11 of 27) intron (NM_001142699, intron 11 of 27) 266412 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 125.333-40 chr14 41008903 41009079 + 0.833333 NA intron (NR_109758, intron 3 of 3) L1MD3|LINE|L1 54280 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 214.833-3 chr11 79424835 79425155 + 0.833333 NA intron (NM_001098816, intron 1 of 33) MIRb|SINE|MIR -2769 NR_049841 100847000 NR_049841 ENSG00000266570 MIR5579 - microRNA 5579 ncRNA 240.833-25 chr8 38986632 38987020 + 0.833333 NA intron (NM_153692, intron 8 of 8) MIRb|SINE|MIR 9683 NM_078473 83877 Hs.7471 NM_031940 ENSG00000169490 TM2D2 BLP1 TM2 domain containing 2 protein-coding 191.333-10 chr13 68836871 68837321 + 0.833333 NA Intergenic Intergenic 48229 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 144.333-66 chr4 165324285 165324558 + 0.833333 NA Intergenic Intergenic -3245 NM_001017369 6307 Hs.105269 NM_006745 ENSG00000052802 MSMO1 DESP4|ERG25|MCCPD|SC4MOL methylsterol monooxygenase 1 protein-coding 285.333-13 chr5 6372974 6373525 + 0.833333 NA intron (NM_032286, intron 3 of 3) intron (NM_032286, intron 3 of 3) 5298 NM_032286 84246 Hs.13885 NM_032286 ENSG00000133398 MED10 L6|NUT2|TRG20 mediator complex subunit 10 protein-coding 180.5-45 chr6 73418375 73418707 + 0.833333 NA TTS (NM_018665) TTS (NM_018665) 23713 NM_018665 55510 Hs.125507 NM_018665 ENSG00000080007 DDX43 CT13|HAGE DEAD-box helicase 43 protein-coding 172-22 chr14 85223470 85223832 + 0.833333 NA Intergenic LTR48|LTR|ERV1 -48281 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 184.333-3 chr10 57316587 57316993 + 0.833333 NA Intergenic Intergenic -12231 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 209.333-22 chr20 46887882 46888414 + 0.833333 NA Intergenic L2a|LINE|L2 -6476 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 164-74 chr8 108992630 108992948 + 0.833333 NA Intergenic Intergenic -93839 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 158.333-31 chr15 66728590 66728792 + 0.833333 NA intron (NR_027654, intron 4 of 4) AluSg|SINE|Alu 26455 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 147.333-90 chr8 82586239 82586583 + 0.833333 NA Intergenic L1MA4A|LINE|L1 -325693 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 176.5-32 chr2 81307963 81308290 + 0.833333 NA Intergenic L1MC5|LINE|L1 158820 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 118.167-32 chr2 47039852 47039993 + 0.833333 NA intron (NM_001288951, intron 15 of 20) intron (NM_001288951, intron 15 of 20) -98067 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 167-47 chr5 154099665 154099923 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR 60827 NM_005927 4238 Hs.432818 NM_005927 ENSG00000037749 MFAP3 - microfibril associated protein 3 protein-coding 194.833-27 chr7 55507581 55507901 + 0.833333 NA intron (NM_001321242, intron 2 of 4) L4_A_Mam|LINE|RTE-X 19139 NM_001321251 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 138.833-25 chr16 3548034 3548389 + 0.833333 NA exon (NM_178844, exon 15 of 20) exon (NM_178844, exon 15 of 20) 29192 NR_075083 197358 Hs.592091 NM_178844 ENSG00000167984 NLRC3 CLR16.2|NOD3 NLR family CARD domain containing 3 protein-coding 199.833-28 chr7 3763378 3763807 + 0.833333 NA intron (NM_152744, intron 4 of 44) L1ME2z|LINE|L1 -366093 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 120.333-75 chr3 114300524 114300694 + 0.833333 NA intron (NM_173799, intron 3 of 3) MSTD|LTR|ERVL-MaLR 6581 NM_173799 201633 Hs.421750 NM_173799 ENSG00000181847 TIGIT VSIG9|VSTM3|WUCAM T cell immunoreceptor with Ig and ITIM domains protein-coding 117.667-14 chr10 48622205 48622430 + 0.833333 NA intron (NM_001347738, intron 2 of 10) L1M4|LINE|L1 -17186 NM_001347737 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 130.333-31 chr14 26808251 26808448 + 0.833333 NA promoter-TSS (NR_110556) promoter-TSS (NR_110556) -999 NR_110557 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 151.833-15 chr12 21106281 21106524 + 0.833333 NA Intergenic Intergenic -24792 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 164.333-29 chr18 73701180 73701441 + 0.833333 NA Intergenic L1MC3|LINE|L1 376369 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 145.667-72 chr4 39740200 39740566 + 0.833333 NA intron (NM_005339, intron 2 of 6) intron (NM_005339, intron 2 of 6) 42247 NM_005339 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 174.667-24 chr15 94031755 94031993 + 0.833333 NA intron (NR_120320, intron 2 of 8) LTR16E2|LTR|ERVL 76064 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 113.333-66 chr21 44013937 44014120 + 0.833333 NA intron (NM_003274, intron 1 of 22) intron (NM_003274, intron 1 of 22) 1719 NM_003274 7109 Hs.126221 NM_003274 ENSG00000160218 TRAPPC10 EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30 trafficking protein particle complex 10 protein-coding 209.5-12 chr14 67676994 67677278 + 0.833333 NA 3' UTR (NM_001252650, exon 6 of 6) 3' UTR (NM_001252650, exon 6 of 6) -2504 NM_006370 10490 Hs.741177 NM_006370 ENSG00000100568 VTI1B VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 vesicle transport through interaction with t-SNAREs 1B protein-coding 274.333-11 chr6 35131714 35132286 + 0.833333 NA intron (NM_001366330, intron 1 of 7) intron (NM_001366330, intron 1 of 7) 9339 NM_001366330 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 205.833-27 chr5 175390143 175390607 + 0.833333 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 53807 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 196.167-33 chr7 13332930 13333426 + 0.833333 NA Intergenic Intergenic 645545 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 169-31 chr20 9027519 9027892 + 0.833333 NA Intergenic Intergenic -41349 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 139-38 chr3 32947556 32947724 + 0.833333 NA Intergenic MER74C|LTR|ERVL -4004 NM_005508 1233 Hs.184926 NM_005508 ENSG00000183813 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 C-C motif chemokine receptor 4 protein-coding 142-44 chr2 81884632 81884905 + 0.833333 NA Intergenic Tigger4b|DNA|TcMar-Tigger -417822 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 143.333-46 chr20 39414189 39414511 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -189602 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 159-65 chr7 137611594 137611879 + 0.833333 NA intron (NM_001321710, intron 8 of 32) intron (NM_001321710, intron 8 of 32) 234596 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 241.833-6 chr11 44836024 44836390 + 0.833333 NA intron (NM_130783, intron 2 of 9) Tigger1|DNA|TcMar-Tigger 109245 NM_130783 90139 Hs.385634 NM_130783 ENSG00000157570 TSPAN18 TSPAN tetraspanin 18 protein-coding 222.167-5 chr10 9593258 9593601 + 0.833333 NA Intergenic L1ME1|LINE|L1 -297836 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 128.167-38 chr2 5599780 5599971 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger 91243 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 121.833-32 chr2 33892032 33892206 + 0.833333 NA intron (NR_126403, intron 2 of 5) intron (NR_126403, intron 2 of 5) -163902 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 149.5 chr1 77196820 77197127 + 0.833333 NA intron (NM_005482, intron 3 of 10) L1PA16|LINE|L1 22457 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 229.5-19 chr3 101493634 101493976 + 0.833333 NA intron (NM_020654, intron 3 of 23) intron (NM_020654, intron 3 of 23) 19407 NM_001077203 57337 Hs.529551 NM_020654 ENSG00000138468 SENP7 - SUMO specific peptidase 7 protein-coding 145.333-19 chr11 118329015 118329324 + 0.833333 NA Intergenic L1PREC2|LINE|L1 13536 NM_001040651 915 Hs.504048 NM_000732 ENSG00000167286 CD3D CD3-DELTA|IMD19|T3D CD3d molecule protein-coding 194.333-3 chr10 73290724 73291193 + 0.833333 NA intron (NM_001367801, intron 20 of 27) L2a|LINE|L2 38217 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 151.333-48 chr2 115280314 115280650 + 0.833333 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -28755 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 131.833-62 chr6 138437937 138438279 + 0.833333 NA intron (NM_020464, intron 4 of 6) Tigger1|DNA|TcMar-Tigger -2814 NR_036099 100423001 NR_036099 ENSG00000266555 MIR3145 mir-3145 microRNA 3145 ncRNA 126.833-47 chr3 179836393 179836667 + 0.833333 NA intron (NM_001349408, intron 8 of 14) LTR54|LTR|ERV1 -61664 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 273.5-2 chr10 96659918 96660330 + 0.833333 NA intron (NM_152309, intron 2 of 16) L1MC1|LINE|L1 60390 NM_152309 118788 Hs.310456 NM_152309 ENSG00000155629 PIK3AP1 BCAP phosphoinositide-3-kinase adaptor protein 1 protein-coding 136.167-60 chr4 85133619 85133831 + 0.833333 NA Intergenic L1PA16|LINE|L1 166241 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 181.833-43 chr5 111772107 111772425 + 0.833333 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -14048 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 166.5-39 chr3 190822237 190822533 + 0.833333 NA Intergenic L1M1|LINE|L1 40309 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 154.5-69 chr7 84617607 84617958 + 0.833333 NA Intergenic MIR3|SINE|MIR 85306 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 269.833-9 chr2 15074750 15075202 + 0.833333 NA Intergenic L1ME4b|LINE|L1 442259 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 166.667-14 chr14 21181352 21181847 + 0.833333 NA Intergenic L1PB1|LINE|L1 23904 NR_038970 283624 Hs.525210 NR_038970 ENSG00000258441 LINC00641 - long intergenic non-protein coding RNA 641 ncRNA 260.833-11 chr4 111886466 111887071 + 0.833333 NA Intergenic L2c|LINE|L2 -258686 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 164-22 chr17 47146140 47146572 + 0.833333 NA intron (NM_001256, intron 9 of 18) MER21C|LTR|ERVL 42939 NM_001353051 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 213.833-3 chr1 221363192 221363534 + 0.833333 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -27067 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 230.333-23 chr5 158275218 158275518 + 0.833333 NA Intergenic Intergenic 134405 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 118.5-3 chr1 57735691 57736069 + 0.833333 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -124701 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 174-16 chr12 115455050 115455361 + 0.833333 NA Intergenic Intergenic 693449 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 137.833-30 chr4 67463040 67463225 + 0.833333 NA Intergenic L1MD2|LINE|L1 -41132 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 253.333-6 chr12 45788407 45788820 + 0.833333 NA intron (NM_152641, intron 3 of 20) intron (NM_152641, intron 3 of 20) 58904 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 296.833-7 chr5 13519497 13519931 + 0.833333 NA Intergenic Intergenic 424766 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 244.167-3 chr11 110564011 110564592 + 0.833333 NA Intergenic Intergenic 134353 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 220.5-3 chr1 115255489 115255911 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -27334 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 177.667-72 chr8 133478601 133478935 + 0.833333 NA intron (NM_003033, intron 3 of 8) L2b|LINE|L2 93119 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 198.833-11 chr19 57312490 57312879 + 0.833333 NA Intergenic L1PA15|LINE|L1 -7788 NM_213598 125919 Hs.202544 NM_213598 ENSG00000178229 ZNF543 - zinc finger protein 543 protein-coding 214.667-32 chr6 153612435 153612832 + 0.833333 NA Intergenic Intergenic -397863 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 358.833 chr3 171359631 171360201 + 0.833333 NA intron (NR_027767, intron 2 of 2) intron (NR_027767, intron 2 of 2) 100489 NM_001161560 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 242.166 chr21 26156250 26156821 + 0.833333 NA intron (NM_001136131, intron 1 of 15) intron (NM_001136131, intron 1 of 15) 14235 NM_000484 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 284.833-7 chr8 79668290 79668840 + 0.833333 NA Intergenic Intergenic 57448 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 127.167-92 chr8 135616703 135616968 + 0.833333 NA intron (NM_006558, intron 7 of 8) intron (NM_006558, intron 7 of 8) 159379 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 255.333-16 chr3 138109038 138109408 + 0.833333 NA intron (NM_173543, intron 1 of 15) MIR|SINE|MIR 4257 NM_001170538 199221 Hs.351403 NM_173543 ENSG00000158163 DZIP1L DZIP2|PKD5 DAZ interacting zinc finger protein 1 like protein-coding 136.833-14 chr12 50895521 50895885 + 0.833333 NA Intergenic L1M5|LINE|L1 -29312 NM_014033 25840 Hs.711113 NM_014033 ENSG00000185432 METTL7A AAM-B|AAMB methyltransferase like 7A protein-coding 144.333-86 chr8 66673647 66673944 + 0.833333 NA intron (NR_161217, intron 1 of 1) L2a|LINE|L2 6199 NR_161217 56260 Hs.661238 NM_019607 ENSG00000213865 C8orf44 - chromosome 8 open reading frame 44 ncRNA 176.833-40 chrX 47399502 47399812 + 0.833333 NA intron (NM_003446, intron 1 of 3) ERVL-B4-int|LTR|ERVL 11007 NR_003710 100124540 Hs.693443 NR_003710 ENSG00000221459 SNORA11C - small nucleolar RNA, H/ACA box 11C snoRNA 323.333-6 chr2 234559215 234559650 + 0.833333 NA Intergenic AluSx3|SINE|Alu -62351 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 149.167-21 chr15 27059535 27059855 + 0.833333 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 88514 NM_001270873 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 180.5-9 chr10 56259722 56260117 + 0.833333 NA Intergenic Intergenic 101340 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 163.833-21 chr14 99719218 99719744 + 0.833333 NA intron (NM_006668, intron 10 of 14) AluSz6|SINE|Alu 35183 NM_006668 10858 Hs.25121 NM_006668 ENSG00000036530 CYP46A1 CP46|CYP46 cytochrome P450 family 46 subfamily A member 1 protein-coding 222-25 chr3 51105360 51105873 + 0.833333 NA intron (NM_004947, intron 9 of 52) L1ME2|LINE|L1 -279675 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 235-5 chr10 41718399 41718860 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 649416 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 199.167-19 chr2 78320295 78320752 + 0.833333 NA Intergenic L1MEc|LINE|L1 -29792 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 204-12 chr18 9519433 9519772 + 0.833333 NA intron (NM_006788, intron 3 of 9) intron (NM_006788, intron 3 of 9) 44089 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 136.5-58 chr2 222461386 222461622 + 0.833333 NA intron (NM_001320833, intron 2 of 5) MER1A|DNA|hAT-Charlie 36961 NM_152386 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 227.5-21 chr4 9867401 9867979 + 0.833333 NA intron (NM_001001290, intron 11 of 12) LTR78|LTR|ERV1 86056 NM_000798 1816 Hs.380681 NM_000798 ENSG00000169676 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 190.5-15 chr13 47204214 47204615 + 0.833333 NA Intergenic AluSx|SINE|Alu -307338 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 176.5-50 chr4 34907393 34907638 + 0.833333 NA Intergenic Intergenic -637768 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 299.833-6 chr5 37588155 37588635 + 0.833333 NA intron (NM_001345998, intron 9 of 17) intron (NM_001345998, intron 9 of 17) 209077 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 155.167-4 chr1 189894484 189894686 + 0.833333 NA Intergenic Intergenic 581425 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 117.167-84 chr6 95459095 95459433 + 0.833333 NA Intergenic L1MA8|LINE|L1 118187 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 155.5-3 chr1 171801001 171801224 + 0.833333 NA Intergenic Intergenic 19452 NM_014955 51603 Hs.494705 NM_014955 ENSG00000010165 EEF1AKNMT 5630401D24Rik|CGI-01|DFNB26|DFNB26M|KIAA0859|METTL13|feat eEF1A lysine and N-terminal methyltransferase protein-coding 168.333-41 chr4 32743899 32744346 + 0.833333 NA Intergenic Intergenic 393084 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 176-7 chr11 78062644 78063055 + 0.833333 NA intron (NM_001203262, intron 1 of 2) intron (NM_001203262, intron 1 of 2) -1012 NM_003251 7069 Hs.591969 NM_003251 ENSG00000151365 THRSP LPGP1|Lpgp|S14|SPOT14|THRP thyroid hormone responsive protein-coding 129-11 chr10 44320825 44321126 + 0.833333 NA Intergenic L1MB7|LINE|L1 28225 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 233.167-31 chr7 100528905 100529306 + 0.833333 NA Intergenic AluSq2|SINE|Alu -10098 NM_006076 3268 Hs.521083 NM_006076 ENSG00000106351 AGFG2 HRBL|RABR ArfGAP with FG repeats 2 protein-coding 226-9 chr2 45736013 45736413 + 0.833333 NA intron (NM_005400, intron 1 of 14) AluSx1|SINE|Alu 84538 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 116.167-15 chr10 64139166 64139489 + 0.833333 NA Intergenic L3|LINE|CR1 -617437 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 193.667-17 chr15 49999738 50000145 + 0.833333 NA intron (NR_073597, intron 8 of 26) L1MD1|LINE|L1 113438 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 155.833-2 chr1 79288081 79288447 + 0.833333 NA Intergenic MLT1H|LTR|ERVL-MaLR -281534 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 167.5-4 chr1 173896746 173897089 + 0.833333 NA 3' UTR (NM_001346115, exon 4 of 4) 3' UTR (NM_001346115, exon 4 of 4) 20410 NM_001365052 462 Hs.75599 NM_000488 ENSG00000117601 SERPINC1 AT3|AT3D|ATIII|ATIII-R2|ATIII-T1|ATIII-T2|THPH7 serpin family C member 1 protein-coding 113.667-84 chr3 99541529 99541689 + 0.833333 NA Intergenic UCON33|DNA|TcMar-Tigger -96985 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 168-11 chr12 30772490 30772772 + 0.833333 NA intron (NR_135046, intron 1 of 1) AluSz|SINE|Alu 17557 NR_135046 645485 Hs.232332 NR_135046 ENSG00000246331 LOC645485 - uncharacterized LOC645485 ncRNA 126-34 chr16 26074645 26074799 + 0.833333 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 49485 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 147.5-66 chr4 71304423 71304684 + 0.833333 NA intron (NM_001098484, intron 3 of 25) MLT2B1|LTR|ERVL -34500 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 118.167-45 chr3 107196125 107196400 + 0.833333 NA intron (NR_028303, intron 1 of 3) AluSx1|SINE|Alu 44376 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 210.5-2 chr1 64791445 64791740 + 0.833333 NA intron (NM_001366165, intron 5 of 11) intron (NM_001366165, intron 5 of 11) 46517 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 113.5-64 chr3 159183219 159183402 + 0.833333 NA intron (NM_001197113, intron 1 of 10) intron (NM_001197113, intron 1 of 10) -89937 NM_001197108 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 125.833-36 chr2 41321169 41321587 + 0.833333 NA Intergenic Intergenic -556177 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 171.333-25 chr16 5421791 5422025 + 0.833333 NA Intergenic L1ME3G|LINE|L1 194342 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 169.167-17 chr14 75870519 75870784 + 0.833333 NA intron (NM_015072, intron 29 of 31) intron (NM_015072, intron 29 of 31) 111344 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 232.667-14 chr2 82617937 82618441 + 0.833333 NA Intergenic Intergenic -238614 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 242.333 chr1 76187006 76187475 + 0.833333 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 112494 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 181-39 chr2 216713052 216713463 + 0.833333 NA Intergenic AluSq2|SINE|Alu -17708 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 155.5-51 chr6 116698551 116698964 + 0.833333 NA exon (NM_001366309, exon 6 of 10) exon (NM_001366309, exon 6 of 10) 17546 NM_001366304 3841 Hs.182971 NM_002269 ENSG00000196911 KPNA5 IPOA6|SRP6 karyopherin subunit alpha 5 protein-coding 188.667-26 chr18 35714480 35714821 + 0.833333 NA Intergenic Intergenic 60081 NM_020474 2589 Hs.514806 NM_020474 ENSG00000141429 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 266.667-24 chr8 100337154 100337794 + 0.833333 NA Intergenic Intergenic -1270 NM_001280539 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 135.333-4 chr1 169040747 169040921 + 0.833333 NA intron (NR_104091, intron 3 of 4) L1MA4|LINE|L1 46171 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 186.5-9 chr10 33217905 33218215 + 0.833333 NA intron (NM_001244973, intron 8 of 16) Tigger14a|DNA|TcMar-Tigger -101253 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 177.167-31 chr3 179051233 179051529 + 0.833333 NA intron (NM_152240, intron 3 of 6) L1PB1|LINE|L1 20428 NM_022470 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 202.5-7 chr14 64686626 64687034 + 0.833333 NA Intergenic AluSx|SINE|Alu -17594 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 164.833-37 chr4 103774478 103774998 + 0.833333 NA Intergenic MER57B1|LTR|ERV1 -54753 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 211.833-5 chr10 57200123 57200654 + 0.833333 NA Intergenic Intergenic 104171 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 183.833-29 chr3 119831879 119832147 + 0.833333 NA intron (NM_001354596, intron 9 of 9) MLT1F|LTR|ERVL-MaLR 49303 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 117.167-102 chrX 98673852 98674003 + 0.833333 NA Intergenic Intergenic -1109392 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 283.167-5 chr2 82224266 82225141 + 0.833333 NA Intergenic Intergenic -632100 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 175.667-49 chr4 90783239 90783518 + 0.833333 NA intron (NM_001145065, intron 7 of 10) L1MCb|LINE|L1 548347 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 138.167-24 chr15 70933068 70933250 + 0.833333 NA intron (NM_017691, intron 7 of 15) intron (NM_017691, intron 7 of 15) 40716 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 130.833-72 chr8 105372983 105373185 + 0.833333 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 53541 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 231-34 chr8 141821805 141822114 + 0.833333 NA Intergenic Intergenic -35646 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 138.5-68 chr6 148726611 148726839 + 0.833333 NA Intergenic MSTB1|LTR|ERVL-MaLR -20305 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 212-13 chr16 86339176 86339650 + 0.833333 NA intron (NR_024406, intron 1 of 6) L1PA15|LINE|L1 6266 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 138-20 chr11 59618018 59618270 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -2370 NM_002556 5007 Hs.597091 NM_002556 ENSG00000110048 OSBP OSBP1 oxysterol binding protein protein-coding 148.333-86 chr6 15740482 15740692 + 0.833333 NA Intergenic MER31-int|LTR|ERV1 -77529 NM_001271668 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 140.333-90 chr8 130145589 130145814 + 0.833333 NA intron (NM_001362925, intron 14 of 29) MIR|SINE|MIR -60933 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 205.5-36 chr5 79410740 79411063 + 0.833333 NA intron (NM_004272, intron 5 of 8) intron (NM_004272, intron 5 of 8) 102935 NM_001277078 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 210.167-22 chr6 78156120 78156493 + 0.833333 NA Intergenic Intergenic 383003 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 116.5-98 chr9 104295917 104296180 + 0.833333 NA Intergenic Intergenic 25819 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 163.333-84 chr9 29575314 29575547 + 0.833333 NA Intergenic Intergenic -361829 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 205.5-20 chr2 33180254 33180625 + 0.833333 NA intron (NM_206943, intron 5 of 33) intron (NM_206943, intron 5 of 33) 45842 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 125-104 chr9 25617595 25617776 + 0.833333 NA Intergenic Intergenic 61173 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 178.833-32 chr6 106316125 106316421 + 0.833333 NA promoter-TSS (NR_104403) promoter-TSS (NR_104403) -7 NR_104403 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 257.5-15 chr6 105542009 105542539 + 0.833333 NA Intergenic Intergenic -139192 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 193.833 chr1 61122064 61122382 + 0.833333 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 39662 NM_005595 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 118.167-68 chr9 18641735 18641993 + 0.833333 NA intron (NM_052866, intron 7 of 12) intron (NM_052866, intron 7 of 12) 68558 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 163-7 chr10 32305436 32305863 + 0.833333 NA intron (NM_001272004, intron 2 of 13) intron (NM_001272004, intron 2 of 13) 41509 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 213-11 chr17 63307950 63308333 + 0.833333 NA intron (NM_025185, intron 8 of 25) intron (NM_025185, intron 8 of 25) 132126 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 138.167-26 chr15 100400570 100400907 + 0.833333 NA 3' UTR (NM_001290342, exon 13 of 13) 3' UTR (NM_001290342, exon 13 of 13) 27799 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 222.5-8 chr17 57832820 57833295 + 0.833333 NA Intergenic MIRb|SINE|MIR 16987 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 151.167-39 chr5 53471296 53471533 + 0.833333 NA Intergenic Intergenic -9215 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 141.333-43 chr17 79779229 79779426 + 0.833333 NA intron (NM_032647, intron 2 of 3) intron (NM_032647, intron 2 of 3) 1149 NM_032647 84733 Hs.368410 NM_005189 ENSG00000173894 CBX2 CDCA6|M33|SRXY5 chromobox 2 protein-coding 118-4 chr1 78882423 78882759 + 0.833333 NA Intergenic MLT1G1|LTR|ERVL-MaLR 124139 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 170.167-46 chr5 128617809 128618083 + 0.833333 NA Intergenic L1MEd|LINE|L1 -79701 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 192.5-13 chr14 50776792 50777404 + 0.833333 NA exon (NM_020921, exon 7 of 31) exon (NM_020921, exon 7 of 31) -44699 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 198.167-27 chr5 10850934 10851279 + 0.833333 NA Intergenic Intergenic -89872 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 158.5-16 chr12 48663295 48663588 + 0.833333 NA intron (NM_017822, intron 7 of 9) intron (NM_017822, intron 7 of 9) 4152 NR_002951 677794 Hs.683444 NR_002951 ENSG00000207313 SNORA2B ACA2b small nucleolar RNA, H/ACA box 2B snoRNA 385.5-2 chr21 42355674 42356537 + 0.833333 NA Intergenic MER58B|DNA|hAT-Charlie -5111 NM_005423 7032 Hs.2979 NM_005423 ENSG00000160181 TFF2 SML1|SP trefoil factor 2 protein-coding 173.167-12 chr13 37063849 37064292 + 0.833333 NA Intergenic MSTD|LTR|ERVL-MaLR -4357 NM_001278480 55578 Hs.435815 NM_017569 ENSG00000102710 SUPT20H C13|C13orf19|FAM48A|FP757|P38IP|SPT20 SPT20 homolog, SAGA complex component protein-coding 124.833-61 chr3 115055570 115055755 + 0.833333 NA intron (NM_015642, intron 1 of 9) MIRb|SINE|MIR 15752 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 180.667-62 chr6 52418209 52418551 + 0.833333 NA Intergenic AluSq2|SINE|Alu -1962 NR_033327 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 148.833-20 chr14 72796287 72796582 + 0.833333 NA intron (NM_001280542, intron 1 of 10) AluSz|SINE|Alu 96215 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 204.333-22 chr14 65649545 65650187 + 0.833333 NA intron (NM_004480, intron 5 of 9) intron (NM_004480, intron 5 of 9) 178764 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 179.667-34 chr3 76025517 76025928 + 0.833333 NA Intergenic Intergenic -240173 NM_001290210 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 183.833-16 chr16 83358557 83358939 + 0.833333 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -149598 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 242.333-20 chr7 92856198 92856692 + 0.833333 NA intron (NR_110087, intron 2 of 2) intron (NR_110087, intron 2 of 2) -19818 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 223.333-10 chr12 10060405 10060753 + 0.833333 NA intron (NM_207345, intron 5 of 8) L1MD1|LINE|L1 29897 NM_207345 283420 Hs.531189 NM_207345 ENSG00000197992 CLEC9A CD370|DNGR-1|DNGR1|UNQ9341 C-type lectin domain containing 9A protein-coding 178.5-14 chr11 40919242 40919588 + 0.833333 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) 540221 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 130.333-37 chr15 85302541 85302778 + 0.833333 NA Intergenic Intergenic 62308 NM_001310153 100133220 Hs.454625 NM_001310153 GOLGA6L3 - golgin A6 family like 3 protein-coding 253.5-13 chr18 43150105 43150833 + 0.833333 NA Intergenic Intergenic -34777 NM_001272077 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 129.333-114 chrX 97349338 97349515 + 0.833333 NA intron (NM_007309, intron 24 of 26) intron (NM_007309, intron 24 of 26) 215109 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 192.167-6 chr10 84559372 84559751 + 0.833333 NA Intergenic L1MEg|LINE|L1 134392 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 177-13 chr11 105131587 105132006 + 0.833333 NA Intergenic L1M5|LINE|L1 7973 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 166.833-38 chr6 120652524 120652739 + 0.833333 NA Intergenic Intergenic 637452 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 181.5-45 chr5 30850601 30851071 + 0.833333 NA Intergenic Intergenic -342850 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 188.333-20 chr17 1822395 1822643 + 0.833333 NA intron (NM_052928, intron 2 of 10) L1MD|LINE|L1 7383 NM_052928 114826 Hs.514602 NM_052928 ENSG00000186532 SMYD4 ZMYND21 SET and MYND domain containing 4 protein-coding 196.167-7 chr11 33853747 33854173 + 0.833333 NA Intergenic L1MC4|LINE|L1 15918 NM_001142316 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 LMO-2|RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 200.333-9 chr14 61392361 61392643 + 0.833333 NA intron (NM_006255, intron 2 of 13) L1ME2|LINE|L1 71059 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 238.667-15 chr2 56855965 56856352 + 0.833333 NA Intergenic L1PA15|LINE|L1 -670388 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 143.833-47 chr7 24481556 24481821 + 0.833333 NA Intergenic Intergenic -91764 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 187.667-6 chr10 65332353 65332753 + 0.833333 NA Intergenic HERV16-int|LTR|ERVL -238872 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 133.167-21 chr15 86245843 86246083 + 0.833333 NA intron (NM_152336, intron 6 of 24) AluJr|SINE|Alu 71005 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 257.667-15 chr6 48283967 48284597 + 0.833333 NA Intergenic L1MA1|LINE|L1 -215593 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 124.167-47 chr2 82216856 82217186 + 0.833333 NA Intergenic AluSc8|SINE|Alu -639782 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 196.333-51 chr7 8014711 8015050 + 0.833333 NA intron (NM_138426, intron 2 of 7) intron (NM_138426, intron 2 of 7) 46084 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 142.333-85 chr5 149945940 149946279 + 0.833333 NA Intergenic Intergenic -1316 NM_000440 5145 Hs.567314 NM_000440 ENSG00000132915 PDE6A CGPR-A|PDEA|RP43 phosphodiesterase 6A protein-coding 305.167-7 chr5 26377677 26378113 + 0.833333 NA Intergenic Intergenic 660691 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 141.333-55 chr20 16343689 16343895 + 0.833333 NA intron (NM_024704, intron 23 of 25) Charlie7a|DNA|hAT-Charlie 229656 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 121.167-67 chr5 61171728 61171993 + 0.833333 NA intron (NR_109908, intron 1 of 3) intron (NR_109908, intron 1 of 3) -9392 NM_001048249 643155 Hs.508479 NM_001048249 ENSG00000188725 SMIM15 C5orf43 small integral membrane protein 15 protein-coding 225.5-46 chr7 110629910 110630405 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR -460849 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 135.667-108 chr8 126934457 126934677 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR -78587 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 266-15 chr4 47391545 47392068 + 0.833333 NA intron (NM_000812, intron 5 of 8) L2a|LINE|L2 71896 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 115.333-18 chr12 24854597 24854792 + 0.833333 NA intron (NM_001178091, intron 4 of 9) MIRc|SINE|MIR 47528 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 141.667-94 chr6 67346844 67347073 + 0.833333 NA Intergenic HERVL18-int|LTR|ERVL -708393 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 125-94 chr8 98334047 98334544 + 0.833333 NA Intergenic Intergenic -40060 NR_135747 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 155.833-46 chr4 30067025 30067332 + 0.833333 NA Intergenic Intergenic -653191 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 214.667-35 chr7 71631968 71632320 + 0.833333 NA intron (NM_022479, intron 6 of 10) intron (NM_022479, intron 6 of 10) -324374 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 176.833-29 chr6 54879812 54880224 + 0.833333 NA intron (NM_001010872, intron 2 of 4) intron (NM_001010872, intron 2 of 4) 33247 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 286.167-12 chr6 132566930 132567439 + 0.833333 NA Intergenic Intergenic -3138 NM_175067 319100 Hs.434196 NM_175067 ENSG00000146383 TAAR6 TA4|TAR4|TAR6|TRAR4|taR-4|taR-6 trace amine associated receptor 6 protein-coding 166.333-76 chr7 112232325 112232552 + 0.833333 NA intron (NM_021994, intron 1 of 11) intron (NM_021994, intron 1 of 11) 25743 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 232.5-37 chr8 29697585 29698011 + 0.833333 NA Intergenic MER6A|DNA|TcMar-Tigger 50311 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 123.167-8 chr10 14305517 14305669 + 0.833333 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 25291 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 372-7 chr8 109418495 109419014 + 0.833333 NA intron (NM_177531, intron 21 of 77) intron (NM_177531, intron 21 of 77) 56293 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 130.667-100 chr8 139384908 139385205 + 0.833333 NA Intergenic Intergenic 318067 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 181.667-40 chr3 162332611 162332928 + 0.833333 NA Intergenic MER5B|DNA|hAT-Charlie 835961 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 145.833-81 chr9 74674630 74674816 + 0.833333 NA intron (NM_006914, intron 9 of 9) intron (NM_006914, intron 9 of 9) 59189 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 132-66 chr5 16146158 16146324 + 0.833333 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 33550 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 202.333-38 chr6 1246752 1247262 + 0.833333 NA Intergenic Intergenic -65091 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 127.833-49 chr22 19901338 19901498 + 0.833333 NA intron (NR_147957, intron 7 of 16) intron (NR_147957, intron 7 of 16) 31135 NM_001352301 10587 Hs.443430 NM_006440 ENSG00000184470 TXNRD2 GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2 thioredoxin reductase 2 protein-coding 123.333-59 chr2 186889324 186889646 + 0.833333 NA Intergenic Intergenic -40315 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 148.333-55 chr20 42727214 42727443 + 0.833333 NA intron (NM_133170, intron 6 of 31) MIR|SINE|MIR 41845 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 165-28 chr20 9933213 9933454 + 0.833333 NA Intergenic Intergenic -53000 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 155-6 chr1 115241170 115241424 + 0.833333 NA Intergenic L3|LINE|CR1 -41737 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 141.167-3 chr1 107168428 107168734 + 0.833333 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 20512 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 229.5-4 chr10 28854817 28855126 + 0.833333 NA intron (NM_001278522, intron 3 of 4) intron (NM_001278522, intron 3 of 4) 8563 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 166.167-19 chr16 22650319 22650694 + 0.833333 NA Intergenic L1ME3G|LINE|L1 104808 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 181-59 chr7 39624942 39625202 + 0.833333 NA intron (NM_005402, intron 1 of 4) L2c|LINE|L2 1500 NM_005402 5898 Hs.6906 NM_005402 ENSG00000006451 RALA RAL RAS like proto-oncogene A protein-coding 170.667-59 chr5 122089079 122089366 + 0.833333 NA Intergenic Intergenic -10963 NM_002317 4015 Hs.102267 NM_002317 ENSG00000113083 LOX AAT10 lysyl oxidase protein-coding 132.667-27 chr13 41545154 41545327 + 0.833333 NA Intergenic Intergenic 23155 NR_049803 100847026 NR_049803 ENSG00000284584 MIR5006 - microRNA 5006 ncRNA 118.667-34 chr15 26657307 26657567 + 0.833333 NA intron (NM_001278631, intron 3 of 9) intron (NM_001278631, intron 3 of 9) -28347 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 124-69 chr4 143125577 143125827 + 0.833333 NA Intergenic MER21B|LTR|ERVL 59159 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 199.5-17 chr18 23272114 23272460 + 0.833333 NA Intergenic Intergenic 116462 NM_138375 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 125.833-64 chr4 65804344 65804617 + 0.833333 NA Intergenic Intergenic -133985 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 154.5-17 chr12 58237841 58238255 + 0.833333 NA Intergenic Intergenic 150156 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 270-11 chr7 20737995 20738410 + 0.833333 NA intron (NM_178559, intron 14 of 18) intron (NM_178559, intron 14 of 18) 48684 NM_198956 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 269.5-19 chr8 144074504 144075135 + 0.833333 NA Intergenic AluJr|SINE|Alu -3853 NM_019037 54512 Hs.632041 NM_019037 ENSG00000178896 EXOSC4 RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A exosome component 4 protein-coding 269.333-2 chr10 113214749 113215347 + 0.833333 NA Intergenic L1ME4a|LINE|L1 85777 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 177.5-50 chr22 34860587 34861033 + 0.833333 NA intron (NR_138042, intron 3 of 4) MIR3|SINE|MIR 137106 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 349.833-5 chr22 26929985 26930571 + 0.833333 NA Intergenic Intergenic 26986 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 205-26 chr3 78013651 78013956 + 0.833333 NA Intergenic L3|LINE|CR1 35160 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 197.833-19 chr2 184123323 184123758 + 0.833333 NA Intergenic L2a|LINE|L2 -255435 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 263.667-14 chr5 51238413 51238832 + 0.833333 NA Intergenic L1MC4|LINE|L1 144710 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 197.333-10 chr13 29239196 29239469 + 0.833333 NA intron (NM_001033602, intron 3 of 13) intron (NM_001033602, intron 3 of 13) -189328 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 245.167-10 chr4 35756338 35756719 + 0.833333 NA Intergenic L1MA3|LINE|L1 487411 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 137.833-25 chr3 103201657 103201861 + 0.833333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 322357 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 208-11 chr14 46571082 46571640 + 0.833333 NA Intergenic Intergenic 80420 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 132.667-42 chr17 62029927 62030114 + 0.833333 NA intron (NM_005121, intron 6 of 29) intron (NM_005121, intron 6 of 29) 35258 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 122.333-4 chr1 68178365 68178585 + 0.833333 NA intron (NM_001193334, intron 1 of 10) AluSg|SINE|Alu 5135 NR_031664 100302279 NR_031664 ENSG00000221203 MIR1262 MIRN1262|hsa-mir-1262|mir-1262 microRNA 1262 ncRNA 123.167-11 chr10 53777083 53777273 + 0.833333 NA Intergenic Intergenic -709052 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 293.667-3 chr14 60724558 60725006 + 0.833333 NA promoter-TSS (NM_017420) promoter-TSS (NM_017420) -431 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 131.667-109 chr6 23224764 23224948 + 0.833333 NA Intergenic L1MEf|LINE|L1 -506932 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 285.333-10 chr4 38639104 38639688 + 0.833333 NA intron (NR_026804, intron 1 of 7) Tigger5|DNA|TcMar-Tigger -24803 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 166.333-88 chrX 21456494 21456726 + 0.833333 NA intron (NM_001168648, intron 4 of 20) L1MA9|LINE|L1 82192 NM_001168648 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 139.5-47 chr4 77975397 77975741 + 0.833333 NA Intergenic L1ME1|LINE|L1 -81754 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 244.333-22 chr5 42365515 42365999 + 0.833333 NA Intergenic Intergenic -57682 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 277.167 chr11 80480241 80480679 + 0.833333 NA Intergenic L3|LINE|CR1 282343 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 145.667-65 chr3 117470124 117470593 + 0.833333 NA Intergenic Intergenic 220567 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 212.167-23 chr7 53359046 53359431 + 0.833333 NA Intergenic Intergenic 323605 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 212-22 chr22 28124633 28124970 + 0.833333 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -204189 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 260.333-7 chr16 20267489 20267911 + 0.833333 NA Intergenic Intergenic 59813 NM_001502 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 212.333-23 chr21 16372422 16372830 + 0.833333 NA intron (NR_027790, intron 4 of 7) L2a|LINE|L2 -46577 NR_136544 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 189-13 chr2 103886370 103886673 + 0.833333 NA Intergenic L1ME3E|LINE|L1 521811 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 184-21 chr17 27370676 27370938 + 0.833333 NA Intergenic L1MEf|LINE|L1 -47198 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family member 3 pseudogene 5 pseudo 142.333-12 chr10 70505914 70506193 + 0.833333 NA intron (NM_014431, intron 1 of 19) Charlie1a|DNA|hAT-Charlie 27286 NM_014431 27143 Hs.202351 NM_014431 ENSG00000107719 PALD1 KIAA1274|PALD phosphatase domain containing paladin 1 protein-coding 160.667-66 chr5 6382518 6382840 + 0.833333 NA Intergenic L1MEi|LINE|L1 -4132 NM_032286 84246 Hs.13885 NM_032286 ENSG00000133398 MED10 L6|NUT2|TRG20 mediator complex subunit 10 protein-coding 148.5-29 chr16 62386488 62386859 + 0.833333 NA Intergenic Intergenic -350235 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 129.833-36 chr2 206690766 206690967 + 0.833333 NA intron (NM_001093730, intron 9 of 11) intron (NM_001093730, intron 9 of 11) 27530 NM_001093730 391475 Hs.640667 NM_001093730 ENSG00000232125 DYTN - dystrotelin protein-coding 122.333-107 chr8 63740431 63740801 + 0.833333 NA Intergenic Intergenic -28814 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 209.5-8 chr12 10698236 10698692 + 0.833333 NA TTS (NM_003651) TTS (NM_003651) -24412 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 262.833-4 chr12 63926588 63927003 + 0.833333 NA intron (NM_001346201, intron 1 of 21) L1MA7|LINE|L1 82095 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 133.333-55 chr2 62969752 62970032 + 0.833333 NA intron (NM_001354215, intron 15 of 24) intron (NM_001354215, intron 15 of 24) 77819 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 207.667-21 chr2 22175583 22175892 + 0.833333 NA Intergenic MER77|LTR|ERVL -360742 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 303.833 chr12 66090482 66090877 + 0.833333 NA Intergenic Intergenic 40071 NM_032338 84298 Hs.504820 NM_032338 ENSG00000139233 LLPH C12orf31|hLLP LLP homolog, long-term synaptic facilitation factor protein-coding 185.833-7 chr11 21524581 21524863 + 0.833333 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) -668363 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 207.833-16 chr18 3144884 3145185 + 0.833333 NA intron (NM_019856, intron 13 of 36) AluSx|SINE|Alu 74934 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 178.5-55 chr4 42803782 42804227 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR -89262 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 135-4 chr1 84725329 84725634 + 0.833333 NA Intergenic Intergenic -35013 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 182.167-3 chr1 154158268 154158756 + 0.833333 NA 3' UTR (NM_001364681, exon 9 of 9) 3' UTR (NM_001364681, exon 9 of 9) -3396 NM_001159484 91181 Hs.67639 NM_207308 ENSG00000143552 NUP210L - nucleoporin 210 like protein-coding 161.167-27 chr2 5787850 5788296 + 0.833333 NA Intergenic Intergenic 24523 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 123.333-34 chr12 109362253 109362488 + 0.833333 NA Intergenic Intergenic -2882 NR_120462 101928138 Hs.143843 NR_120462 ENSG00000256560 LINC01486 - long intergenic non-protein coding RNA 1486 ncRNA 114.333-94 chr4 43240827 43241236 + 0.833333 NA Intergenic Intergenic 251512 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 191.167-8 chr15 35605919 35606385 + 0.833333 NA intron (NR_038251, intron 1 of 2) intron (NR_038251, intron 1 of 2) 59957 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-DT ATPBD4-AS1|DPH6-AS1 DPH6 divergent transcript ncRNA 216.167-26 chr6 44378650 44379029 + 0.833333 NA Intergenic Intergenic -8867 NM_001253 988 Hs.485471 NM_001253 ENSG00000096401 CDC5L CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 cell division cycle 5 like protein-coding 145.5-9 chr12 5416356 5416602 + 0.833333 NA Intergenic L1ME3|LINE|L1 -15629 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 129.5-35 chr18 59637513 59637775 + 0.833333 NA intron (NM_133459, intron 2 of 10) L1ME3D|LINE|L1 59779 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 183.167-49 chr5 91317891 91318182 + 0.833333 NA Intergenic AluJb|SINE|Alu -3634 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 169.667-50 chr21 19639602 19640022 + 0.833333 NA Intergenic Intergenic 259943 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 113.667-10 chr1 213160899 213161159 + 0.833333 NA intron (NM_001136138, intron 5 of 13) intron (NM_001136138, intron 5 of 13) 109788 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 171.5-50 chr5 36949836 36950348 + 0.833333 NA intron (NM_015384, intron 1 of 45) Tigger16a|DNA|TcMar-Tigger 73323 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 140.167-35 chr2 145867252 145867509 + 0.833333 NA Intergenic Intergenic -719677 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 153.333-72 chr6 133503109 133503316 + 0.833333 NA intron (NR_109982, intron 8 of 8) intron (NR_109982, intron 8 of 8) 261713 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 147.5-50 chr2 206603372 206603754 + 0.833333 NA intron (NM_003812, intron 24 of 25) intron (NM_003812, intron 24 of 25) -40664 NM_001102659 200726 NM_001102659 ENSG00000235118 FAM237A - family with sequence similarity 237 member A protein-coding 224.167-27 chr7 111399867 111400194 + 0.833333 NA intron (NM_032549, intron 3 of 5) L2c|LINE|L2 162261 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 139.667-36 chr17 10335595 10335818 + 0.833333 NA intron (NM_003802, intron 18 of 40) AluSx|SINE|Alu 37300 NM_003802 8735 Hs.711142 NM_003802 ENSG00000006788 MYH13 MyHC-IIL|MyHC-eo myosin heavy chain 13 protein-coding 204.833 chr1 49063733 49064131 + 0.833333 NA intron (NM_001323575, intron 4 of 12) MIRb|SINE|MIR -193479 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 168.667-83 chr8 116157484 116157807 + 0.833333 NA intron (NR_046215, intron 4 of 13) intron (NR_046215, intron 4 of 13) 167414 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 236.5-7 chr10 67311372 67311786 + 0.833333 NA intron (NM_001127384, intron 5 of 17) L1ME1|LINE|L1 91831 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 197.667-20 chr14 85460537 85460954 + 0.833333 NA Intergenic Intergenic 66830 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 129.5-82 chr7 135336105 135336370 + 0.833333 NA Intergenic Intergenic 104258 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 116.5-18 chr14 48516449 48516600 + 0.833333 NA Intergenic Intergenic -721510 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 120.333-124 chr9 10187473 10187885 + 0.833333 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 388287 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 236.333-5 chr11 27110127 27110614 + 0.833333 NA intron (NM_003986, intron 5 of 8) L2|LINE|L2 69555 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 170.167-9 chr11 60375900 60376360 + 0.833333 NA Intergenic MIR|SINE|MIR -2355 NM_206938 58475 Hs.530735 NM_021201 ENSG00000166927 MS4A7 4SPAN2|CD20L4|CFFM4|MS4A8 membrane spanning 4-domains A7 protein-coding 154.833-60 chr8 123876963 123877331 + 0.833333 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 25160 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 180.833-28 chr3 80032558 80033047 + 0.833333 NA Intergenic Intergenic -264804 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 171.5-58 chr7 45405663 45405931 + 0.833333 NA Intergenic L1MC3|LINE|L1 -168343 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 151.5-51 chr4 26825440 26825623 + 0.833333 NA Intergenic Intergenic 34713 NR_134675 105374546 Hs.548859 NR_134673 STIM2-AS1 - STIM2 antisense RNA 1 ncRNA 242.833-14 chr8 58364106 58364640 + 0.833333 NA Intergenic L1PA10|LINE|L1 -46891 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 165.667-14 chr11 19998781 19999151 + 0.833333 NA intron (NM_182964, intron 11 of 37) L2b|LINE|L2 -23590 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 148-68 chr5 103357519 103357816 + 0.833333 NA Intergenic Intergenic 98243 NM_001316968 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 218-10 chr14 53852670 53853130 + 0.833333 NA Intergenic Intergenic 95584 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 302.167-2 chr11 96842264 96842754 + 0.833333 NA Intergenic Intergenic 334084 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 130.333-93 chr8 125384306 125384562 + 0.833333 NA Intergenic MER5A1|DNA|hAT-Charlie -45924 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 337.667-5 chr6 122166726 122167459 + 0.833333 NA Intergenic MER57D|LTR|ERV1 -232459 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 118-37 chr14 68646417 68646670 + 0.833333 NA intron (NM_001321818, intron 10 of 10) L1ME4a|LINE|L1 -17756 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 145.5-60 chr5 23020051 23020290 + 0.833333 NA Intergenic AluSq2|SINE|Alu -166826 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 131.833-64 chr7 35794575 35794784 + 0.833333 NA intron (NR_120512, intron 1 of 4) AluSg|SINE|Alu 5946 NR_120511 101928545 Hs.648103 NR_120511 SEPTIN7-AS1 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) ncRNA 172-4 chr10 88298430 88298796 + 0.833333 NA intron (NM_001031709, intron 6 of 6) L1MB5|LINE|L1 284705 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 215.333-3 chr10 22994533 22995099 + 0.833333 NA intron (NM_001282745, intron 10 of 18) L2c|LINE|L2 66763 NM_001282746 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 182.5-6 chr11 41403442 41403720 + 0.833333 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 56055 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 229.334 chr5 155832759 155833410 + 0.833333 NA Intergenic AluSx3|SINE|Alu -493673 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 181.5-16 chr12 84175665 84176092 + 0.833333 NA Intergenic Intergenic 736921 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 169.333-65 chr7 20435195 20435513 + 0.833333 NA Intergenic Intergenic -103592 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 212.833-14 chr3 76597607 76598075 + 0.833333 NA Intergenic L1PREC2|LINE|L1 -442258 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 155-14 chr10 122274823 122275082 + 0.833333 NA intron (NM_001318189, intron 1 of 15) intron (NM_001318189, intron 1 of 15) 3656 NM_001318189 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 196-12 chr10 110888280 110888748 + 0.833333 NA intron (NM_001199492, intron 6 of 11) intron (NM_001199492, intron 6 of 11) -9576 NR_039828 100616113 NR_039828 ENSG00000284482 MIR4680 - microRNA 4680 ncRNA 142.667 chr1 4557662 4557871 + 0.833333 NA Intergenic L1PA16|LINE|L1 -13721 NR_147025 105376679 NR_147025 ENSG00000232596 LINC01646 - long intergenic non-protein coding RNA 1646 ncRNA 149.333-39 chr14 84974253 84974580 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR -297516 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 151-47 chr3 105361336 105361809 + 0.833333 NA Intergenic L2a|LINE|L2 -5141 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 193.833-11 chr11 102529191 102529590 + 0.833333 NA intron (NM_002423, intron 1 of 5) intron (NM_002423, intron 1 of 5) 1357 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 132.833-8 chr10 18153833 18154109 + 0.833333 NA intron (NM_201593, intron 2 of 13) intron (NM_201593, intron 2 of 13) 13547 NM_001167945 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 195.833-10 chr15 54975693 54976072 + 0.833333 NA Intergenic L1ME5|LINE|L1 -80865 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 167.5-21 chr13 50190666 50191098 + 0.833333 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) 18864 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P ST13, Hsp70 interacting protein pseudogene 4 pseudo 182.833-37 chr4 97169727 97170014 + 0.833333 NA Intergenic Intergenic -197056 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 443.5-2 chr8 30377345 30378272 + 0.833333 NA Intergenic AluJr4|SINE|Alu -6693 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein, mRNA processing factor protein-coding 193.167-20 chr2 39906128 39906436 + 0.833333 NA Intergenic Intergenic -11352 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 210.5-46 chr7 24960033 24960288 + 0.833333 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) 20018 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 131.5-78 chr7 69163488 69163676 + 0.833333 NA Intergenic MER63B|DNA|hAT-Blackjack 434042 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 292-6 chr2 48137052 48137716 + 0.833333 NA Intergenic L1M5|LINE|L1 -177298 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 282.5 chr10 32234673 32235178 + 0.833333 NA Intergenic L1MEc|LINE|L1 112233 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 150.167-69 chr9 27262799 27262983 + 0.833333 NA intron (NR_026679, intron 11 of 16) intron (NR_026679, intron 11 of 16) 19902 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 269.333-16 chr6 94823226 94823823 + 0.833333 NA Intergenic AluSg7|SINE|Alu 753927 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 125.167-54 chr3 62868674 62868842 + 0.833333 NA intron (NM_003716, intron 1 of 29) intron (NM_003716, intron 1 of 29) 6658 NM_183394 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 259.667-22 chr4 165338566 165339046 + 0.833333 NA intron (NM_001017369, intron 3 of 4) intron (NM_001017369, intron 3 of 4) 11137 NM_006745 6307 Hs.105269 NM_006745 ENSG00000052802 MSMO1 DESP4|ERG25|MCCPD|SC4MOL methylsterol monooxygenase 1 protein-coding 189.833-12 chr17 42135109 42135419 + 0.833333 NA intron (NM_001252039, intron 1 of 6) AluJb|SINE|Alu 12460 NM_033194 94086 Hs.620611 NM_033194 ENSG00000260325 HSPB9 CT51 heat shock protein family B (small) member 9 protein-coding 126.5-45 chr2 124764244 124764637 + 0.833333 NA intron (NM_130773, intron 16 of 23) intron (NM_130773, intron 16 of 23) 739153 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 174.167-43 chrX 43012907 43013342 + 0.833333 NA Intergenic MIR|SINE|MIR -163870 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 130-78 chr4 156435133 156435584 + 0.833333 NA Intergenic MIRb|SINE|MIR -481492 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 193.667-32 chr22 35038201 35038600 + 0.833333 NA Intergenic Intergenic -27758 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 143-56 chr4 106060545 106060793 + 0.833333 NA intron (NM_001290768, intron 26 of 26) Tigger1|DNA|TcMar-Tigger -38191 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 123.833-63 chr7 130975852 130976087 + 0.833333 NA intron (NR_109851, intron 4 of 5) MSTA|LTR|ERVL-MaLR 62505 NR_109780 100506860 Hs.635013 NR_109780 LINC00513 - long intergenic non-protein coding RNA 513 ncRNA 146.5-4 chr1 171620663 171620907 + 0.833333 NA intron (NM_001368164, intron 1 of 2) AluSc|SINE|Alu 1022 NM_001368164 110806290 NM_001368164 MYOCOS - myocilin opposite strand protein-coding 167.667-82 chr6 162459478 162459882 + 0.833333 NA intron (NM_004562, intron 1 of 11) MIR|SINE|MIR -267452 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 173.167-35 chr5 123552285 123552536 + 0.833333 NA intron (NM_001364141, intron 4 of 14) AluSg|SINE|Alu 6993 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 120.333-55 chr2 144749729 144750067 + 0.833333 NA intron (NR_033870, intron 1 of 4) L1ME1|LINE|L1 81931 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 129-99 chr8 125307602 125307944 + 0.833333 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -122585 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 220-22 chr5 171145837 171146307 + 0.833333 NA intron (NM_022897, intron 14 of 27) intron (NM_022897, intron 14 of 27) -163176 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 164.667-9 chr10 63800833 63801111 + 0.833333 NA Intergenic Intergenic -279082 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 216.5-33 chr8 110280082 110280507 + 0.833333 NA Intergenic L1MA8|LINE|L1 -304523 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 199-34 chr8 71724714 71725013 + 0.833333 NA Intergenic Intergenic -118260 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 169.333-25 chr14 55608035 55608290 + 0.833333 NA intron (NR_073129, intron 2 of 45) intron (NR_073129, intron 2 of 45) 27955 NM_001271014 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 143.5-76 chr7 26949356 26949594 + 0.833333 NA Intergenic Intergenic -84885 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 220.833-23 chr7 92715614 92715971 + 0.833333 NA intron (NM_001259, intron 4 of 7) intron (NM_001259, intron 4 of 7) 118167 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 169.5-36 chr20 42982921 42983142 + 0.833333 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 14288 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 138.333-17 chr11 7755436 7755704 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger 41372 NM_153444 120065 Hs.351824 NM_153444 ENSG00000183303 OR5P2 JCG3|JCG4 olfactory receptor family 5 subfamily P member 2 protein-coding 164.833-6 chr1 244792593 244792943 + 0.833333 NA Intergenic AluJo|SINE|Alu -42538 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 209.333-20 chr2 206388286 206388667 + 0.833333 NA Intergenic L1MC4|LINE|L1 -55056 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 295.167-2 chr11 78568173 78568703 + 0.833333 NA intron (NM_024678, intron 3 of 13) intron (NM_024678, intron 3 of 13) 6426 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 230.167-10 chr19 37237555 37238173 + 0.833333 NA intron (NM_001345948, intron 5 of 5) MLT1A1|LTR|ERVL-MaLR 11400 NM_152604 163087 Hs.590975 NM_152604 ENSG00000188283 ZNF383 HSD17 zinc finger protein 383 protein-coding 121.167-37 chr19 28326694 28327010 + 0.833333 NA Intergenic Intergenic -279836 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 116.5-11 chr11 82155308 82155542 + 0.833333 NA intron (NR_120571, intron 3 of 7) L1MEg|LINE|L1 248488 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 165-9 chr11 11907183 11907458 + 0.833333 NA intron (NM_001282659, intron 8 of 27) intron (NM_001282659, intron 8 of 27) 65897 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 208.5-11 chr10 111225406 111225788 + 0.833333 NA Intergenic Intergenic 111306 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 114.833-8 chr10 38529666 38529876 + 0.833333 NA Intergenic Intergenic 101625 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 335.333-4 chr4 35157189 35157826 + 0.833333 NA Intergenic L1ME1|LINE|L1 -887760 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 132.333-71 chr3 102448006 102448351 + 0.833333 NA intron (NM_175056, intron 2 of 10) intron (NM_175056, intron 2 of 10) 13163 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 178.333-37 chr4 44833101 44833440 + 0.833333 NA Intergenic Intergenic -106636 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 202.167-12 chr14 68056982 68057302 + 0.833333 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 233550 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 146.333-16 chr11 35732396 35732646 + 0.833333 NA intron (NM_017583, intron 3 of 4) L2c|LINE|L2 69746 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 177.333-16 chr12 72054641 72055020 + 0.833333 NA Intergenic MLT1J2|LTR|ERVL-MaLR 115985 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 124.667-19 chr11 41006887 41007182 + 0.833333 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 452602 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 200.5-28 chr22 43568280 43568632 + 0.833333 NA intron (NM_198856, intron 24 of 29) intron (NM_198856, intron 24 of 29) 52202 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 276.167-10 chr5 27075925 27076388 + 0.833333 NA Intergenic L1PA14|LINE|L1 -37570 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 262.833-6 chr14 67414740 67415210 + 0.833333 NA Intergenic Intergenic -2810 NM_016445 26499 Hs.170473 NM_016445 ENSG00000100558 PLEK2 - pleckstrin 2 protein-coding 168.5-12 chr11 109679505 109679940 + 0.833333 NA Intergenic Intergenic 257532 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 211.833-23 chr5 82376762 82377264 + 0.833333 NA Intergenic Intergenic 97551 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 180.5-47 chr7 98059561 98059959 + 0.833333 NA Intergenic AluY|SINE|Alu -47102 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 145.333-81 chr7 84841711 84842101 + 0.833333 NA Intergenic Intergenic 280025 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 126.167-38 chr2 78715661 78715887 + 0.833333 NA Intergenic Intergenic 170243 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 218.5-15 chr17 63044420 63044871 + 0.833333 NA intron (NM_025185, intron 2 of 25) L1ME3Cz|LINE|L1 78410 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 151.5-48 chr3 178043180 178043550 + 0.833333 NA Intergenic Intergenic 226500 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 114.5-14 chr10 122766901 122767045 + 0.833333 NA intron (NR_003570, intron 7 of 27) MIRb|SINE|MIR 10279 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 150.833-13 chr15 63755395 63755767 + 0.833333 NA intron (NM_003922, intron 5 of 77) AluJr|SINE|Alu 78367 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 177.833-18 chr2 113892407 113892803 + 0.833333 NA intron (NM_001277140, intron 1 of 11) intron (NM_001277140, intron 1 of 11) -1613 NR_110174 101060091 Hs.741753 NR_110174 ACTR3-AS1 - ACTR3 antisense RNA 1 ncRNA 183.5-20 chr17 16591934 16592206 + 0.833333 NA Intergenic L1MB5|LINE|L1 -22858 NM_001346169 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 154.167-13 chr11 107212914 107213188 + 0.833333 NA Intergenic MER20B|DNA|hAT-Charlie -194575 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 151.5-57 chr4 158067990 158068280 + 0.833333 NA Intergenic Intergenic -102617 NR_147408 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 135.167-72 chr5 15380116 15380334 + 0.833333 NA Intergenic Intergenic -113665 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 186.167-16 chr13 33603601 33603991 + 0.833333 NA intron (NM_001243476, intron 3 of 17) L1ME3Cz|LINE|L1 72998 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 212.5-5 chr13 38719717 38720130 + 0.833333 NA intron (NM_207361, intron 2 of 23) MamTip2|DNA|hAT-Tip100 32846 NM_207361 341640 Hs.253994 NM_207361 ENSG00000150893 FREM2 CRYPTOP|FRASRS2 FRAS1 related extracellular matrix 2 protein-coding 229-45 chr7 156465960 156466292 + 0.833333 NA Intergenic Intergenic -20538 NR_038232 285889 Hs.407095 NR_038232 ENSG00000182648 LOC285889 - uncharacterized LOC285889 ncRNA 127.5-7 chr1 203895519 203895733 + 0.833333 NA Intergenic FLAM_C|SINE|Alu 33779 NM_001328637 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 222.667-8 chr14 39178880 39179402 + 0.833333 NA exon (NM_002687, exon 7 of 9) exon (NM_002687, exon 7 of 9) 3887 NM_002687 5411 Hs.409965 NM_002687 ENSG00000100941 PNN DRS|DRSP|SDK3|memA pinin, desmosome associated protein protein-coding 235.5-2 chr1 235820283 235820638 + 0.833333 NA intron (NM_000081, intron 3 of 52) AluJb|SINE|Alu 32600 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 160.833-4 chr1 34983699 34984011 + 0.833333 NA exon (NM_001195156, exon 2 of 3) exon (NM_001195156, exon 2 of 3) 1492 NM_001195156 100506144 Hs.533986 NM_001195156 ENSG00000243749 TMEM35B ZMYM6NB transmembrane protein 35B protein-coding 139.167-35 chr2 44387834 44388207 + 0.833333 NA intron (NM_024766, intron 2 of 10) L1PB1|LINE|L1 26073 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 215-32 chr5 114013063 114013610 + 0.833333 NA Intergenic Charlie2a|DNA|hAT-Charlie -348734 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 182.333-65 chr7 93002329 93002730 + 0.833333 NA Intergenic L1MB8|LINE|L1 115450 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 113.833-23 chr15 78671537 78671757 + 0.833333 NA Intergenic Intergenic -30437 NM_001256567 1143 Hs.624178 NM_000750 ENSG00000117971 CHRNB4 - cholinergic receptor nicotinic beta 4 subunit protein-coding 155.833-67 chr8 90354213 90354497 + 0.833333 NA intron (NR_051989, intron 3 of 3) intron (NR_051989, intron 3 of 3) 132867 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 145.5-33 chr2 31851777 31852029 + 0.833333 NA Intergenic AluSz|SINE|Alu -47923 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 182-36 chr4 41597285 41597833 + 0.833333 NA intron (NM_001330786, intron 1 of 22) MLT1E1|LTR|ERVL-MaLR -15150 NM_001112719 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 185.5-45 chr6 80403607 80403951 + 0.833333 NA Intergenic L1MA9|LINE|L1 297108 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 139.167-14 chr12 48948680 48949018 + 0.833333 NA intron (NM_001659, intron 1 of 4) L2c|LINE|L2 8638 NM_001659 377 Hs.119177 NM_001659 ENSG00000134287 ARF3 - ADP ribosylation factor 3 protein-coding 143-15 chr12 14730484 14730867 + 0.833333 NA Intergenic L1MDa|LINE|L1 -34076 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 140.667-30 chr15 56868598 56869004 + 0.833333 NA Intergenic Intergenic -49289 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 158.167-37 chr4 70954657 70954879 + 0.833333 NA intron (NM_001244766, intron 2 of 6) AluSz|SINE|Alu -38881 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 137.667-74 chr4 24127937 24128294 + 0.833333 NA intron (NR_148982, intron 1 of 13) intron (NR_148982, intron 1 of 13) -238068 NM_013261 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 214.667-28 chr5 13941175 13941451 + 0.833333 NA intron (NM_001369, intron 1 of 78) AluJr|SINE|Alu 3167 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 156.5-49 chr2 151147745 151148119 + 0.833333 NA Intergenic Intergenic 113931 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 128.667-76 chr3 122472561 122472806 + 0.833333 NA intron (NR_026698, intron 2 of 14) L1MC1|LINE|L1 42256 NM_002264 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 205.167-7 chr10 114582657 114583140 + 0.833333 NA intron (NM_001352440, intron 2 of 20) L1PA16|LINE|L1 30838 NM_001352442 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 145.667-104 chr9 83533059 83533456 + 0.833333 NA intron (NM_174938, intron 1 of 13) MIRc|SINE|MIR 5144 NM_174938 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 152.167-66 chr7 33250044 33250256 + 0.833333 NA intron (NM_198428, intron 5 of 22) MIRb|SINE|MIR 120586 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 223-26 chr5 60923282 60923897 + 0.833333 NA intron (NM_001007234, intron 2 of 5) BLACKJACK|DNA|hAT-Blackjack 21481 NM_001007234 1161 Hs.435237 NM_000082 ENSG00000049167 ERCC8 CKN1|CSA|UVSS2 ERCC excision repair 8, CSA ubiquitin ligase complex subunit protein-coding 153.5-63 chr6 62936686 62936956 + 0.833333 NA Intergenic L1MA3|LINE|L1 383156 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 213.833-25 chr3 113187091 113187367 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -19498 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 138-81 chr5 21409177 21409420 + 0.833333 NA Intergenic L1PA8|LINE|L1 -50182 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 140.833-9 chr11 3711631 3711890 + 0.833333 NA 3' UTR (NM_005387, exon 20 of 20) 3' UTR (NM_005387, exon 20 of 20) -40376 NM_001303034 57053 Hs.732806 NM_020402 ENSG00000129749 CHRNA10 - cholinergic receptor nicotinic alpha 10 subunit protein-coding 185.667-44 chr5 169042415 169042899 + 0.833333 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 29430 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 128.5-54 chr3 150178735 150178925 + 0.833333 NA Intergenic LTR16A|LTR|ERVL -59689 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 129.833-57 chr5 145472094 145472268 + 0.833333 NA Intergenic Intergenic 363161 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 160.833-40 chr5 151706729 151707073 + 0.833333 NA Intergenic MER113|DNA|hAT-Charlie -19986 NM_003118 6678 Hs.111779 NM_003118 ENSG00000113140 SPARC BM-40|OI17|ON secreted protein acidic and cysteine rich protein-coding 177-5 chr10 10879555 10879876 + 0.833333 NA intron (NM_001326328, intron 2 of 15) intron (NM_001326328, intron 2 of 15) 72448 NR_015413 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 121.667-97 chr8 73615453 73615638 + 0.833333 NA intron (NM_001164384, intron 6 of 10) intron (NM_001164384, intron 6 of 10) 131295 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 163-40 chr3 89727056 89727418 + 0.833333 NA Intergenic Intergenic 619616 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 121-92 chr8 120769657 120769853 + 0.833333 NA intron (NR_125419, intron 3 of 4) intron (NR_125419, intron 3 of 4) 8502 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 169-57 chr7 87826279 87826544 + 0.833333 NA intron (NM_138290, intron 11 of 11) THE1B|LTR|ERVL-MaLR 49949 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 178.833-19 chr2 123092053 123092442 + 0.833333 NA Intergenic L1MEd|LINE|L1 -18766 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 203.333-31 chr3 78838802 78839230 + 0.833333 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 180443 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 189.333-4 chr11 21026760 21027099 + 0.833333 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 357343 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 344.167 chr1 185874668 185875408 + 0.833333 NA intron (NM_031935, intron 4 of 106) intron (NM_031935, intron 4 of 106) 140647 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 152.667-51 chr3 31274547 31274773 + 0.833333 NA Intergenic L2b|LINE|L2 -112873 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 250.167-15 chr5 13975583 13976054 + 0.833333 NA Intergenic LTR67B|LTR|ERVL -31338 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 162.5-71 chr7 70265050 70265444 + 0.833333 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 666772 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 258.667-14 chr2 195127867 195128213 + 0.833333 NA Intergenic Intergenic 397445 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 188.333-3 chr10 44283752 44284041 + 0.833333 NA Intergenic L1ME3G|LINE|L1 -8854 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 128.333-68 chr2 166942939 166943191 + 0.833333 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 54578 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 145.5-56 chr4 158220321 158220655 + 0.833333 NA intron (NM_018342, intron 6 of 12) MIR|SINE|MIR 10002 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 122.5-78 chr6 35171758 35171919 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR -30428 NM_001261819 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 199.333-41 chr8 55774176 55774677 + 0.833333 NA intron (NM_001317902, intron 1 of 10) intron (NM_001317902, intron 1 of 10) 980 NM_001317902 96764 Hs.335068 NM_024831 ENSG00000137574 TGS1 NCOA6IP|PIMT|PIPMT trimethylguanosine synthase 1 protein-coding 146.5-51 chr22 25881927 25882115 + 0.833333 NA intron (NM_001318245, intron 25 of 43) L2c|LINE|L2 139833 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 192.333-31 chr3 37003837 37004164 + 0.833333 NA intron (NM_001167619, intron 3 of 17) intron (NM_001167619, intron 3 of 17) 10650 NM_001354627 4292 Hs.195364 NM_000249 ENSG00000076242 MLH1 COCA2|FCC2|HNPCC|HNPCC2|hMLH1 mutL homolog 1 protein-coding 140-28 chr15 64121499 64121794 + 0.833333 NA intron (NM_003099, intron 4 of 14) MLT1C|LTR|ERVL-MaLR 25664 NM_148955 6642 Hs.188634 NM_003099 ENSG00000028528 SNX1 HsT17379|VPS5 sorting nexin 1 protein-coding 302.5-3 chr2 104088236 104089086 + 0.833333 NA Intergenic L1ME2z|LINE|L1 319671 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 168.5-33 chr20 2963665 2963988 + 0.833333 NA intron (NM_080841, intron 3 of 22) AluJo|SINE|Alu 40619 NM_080841 5786 Hs.269577 NM_002836 ENSG00000132670 PTPRA HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA protein tyrosine phosphatase receptor type A protein-coding 240.167-18 chr8 71106726 71107083 + 0.833333 NA Intergenic MER127|DNA|TcMar-Tigger 249802 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 128.5-48 chr22 27313801 27314067 + 0.833333 NA non-coding (NR_134581, exon 1 of 2) non-coding (NR_134581, exon 1 of 2) 3283 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 198-54 chr6 141085838 141086267 + 0.833333 NA Intergenic Intergenic 402238 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 158.333-64 chr6 136766806 136767111 + 0.833333 NA intron (NM_005923, intron 1 of 29) intron (NM_005923, intron 1 of 29) -17089 NR_134635 101928429 Hs.672896 NR_134635 LOC101928429 - uncharacterized LOC101928429 ncRNA 234.167-13 chr4 41047401 41047926 + 0.833333 NA intron (NM_001330658, intron 3 of 15) MIR|SINE|MIR 166879 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 132-22 chr14 29650989 29651383 + 0.833333 NA intron (NM_002742, intron 4 of 17) intron (NM_002742, intron 4 of 17) 275910 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 142.833-56 chr5 32839368 32839593 + 0.833333 NA Intergenic MER53|DNA|hAT -107963 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 203.833-28 chr8 94726688 94727091 + 0.833333 NA intron (NM_181787, intron 2 of 18) MLT1I|LTR|ERVL-MaLR 6989 NM_181787 286148 Hs.567828 NM_181787 ENSG00000156162 DPY19L4 - dpy-19 like 4 protein-coding 386.167-2 chr4 16104482 16105327 + 0.833333 NA Intergenic Intergenic -20881 NM_006017 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 178.833-25 chr3 87909978 87910317 + 0.833333 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -72429 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 278.833-5 chr3 82061083 82061570 + 0.833333 NA intron (NR_147146, intron 1 of 8) L1PA16|LINE|L1 75184 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 256.167-15 chr4 93735796 93736144 + 0.833333 NA intron (NM_001286838, intron 13 of 14) intron (NM_001286838, intron 13 of 14) -92783 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 267.333-8 chr13 27655445 27655909 + 0.833333 NA intron (NM_152705, intron 2 of 2) L1MC4|LINE|L1 33785 NM_015972 51082 Hs.507584 NM_015972 ENSG00000186184 POLR1D AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2 RNA polymerase I and III subunit D protein-coding 124.833-29 chr18 1896731 1897064 + 0.833333 NA Intergenic L1PA17|LINE|L1 -537268 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 246.333-6 chr11 128486262 128486862 + 0.833333 NA intron (NM_001143820, intron 5 of 9) intron (NM_001143820, intron 5 of 9) 35748 NM_001330451 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 186.667-34 chr2 58209868 58210197 + 0.833333 NA intron (NR_156742, intron 1 of 9) intron (NR_156742, intron 1 of 9) 31348 NR_156742 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 189.333-41 chr4 109024372 109024831 + 0.833333 NA intron (NM_198721, intron 4 of 36) intron (NM_198721, intron 4 of 36) -261548 NM_001331033 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 173-32 chr2 148493415 148493764 + 0.833333 NA intron (NM_018328, intron 12 of 14) intron (NM_018328, intron 12 of 14) -151162 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 154.5-65 chr6 166874502 166874772 + 0.833333 NA Intergenic Intergenic -12112 NM_001318937 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 254.167-3 chr12 27467479 27468250 + 0.833333 NA intron (NM_001145010, intron 1 of 8) MIRc|SINE|MIR 1054 NM_001145010 341346 Hs.282121 NM_001145010 ENSG00000165935 SMCO2 C12orf70 single-pass membrane protein with coiled-coil domains 2 protein-coding 199.5 chr1 60546335 60546679 + 0.833333 NA intron (NR_146508, intron 4 of 7) intron (NR_146508, intron 4 of 7) 76178 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 156-76 chr6 3896000 3896212 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 46733 NM_012135 26240 Hs.140944 NM_012135 ENSG00000145945 FAM50B D6S2654E|X5L family with sequence similarity 50 member B protein-coding 169.5-58 chr5 157132576 157133038 + 0.833333 NA Intergenic Intergenic 9968 NM_001100816 9443 Hs.279902 NM_004270 ENSG00000155868 MED7 ARC34|CRSP33|CRSP9 mediator complex subunit 7 protein-coding 186.833-6 chr10 108037308 108037575 + 0.833333 NA intron (NR_125760, intron 4 of 4) MER77B|LTR|ERVL 31852 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 228.5-8 chr14 28916411 28916846 + 0.833333 NA Intergenic MIR|SINE|MIR -130841 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 129.5-29 chr17 39002040 39002222 + 0.833333 NA Intergenic L2c|LINE|L2 24979 NR_135645 105371766 Hs.311469 NR_135645 ENSG00000266013 LINC02079 - long intergenic non-protein coding RNA 2079 ncRNA 170.333-19 chr12 41404563 41405025 + 0.833333 NA intron (NM_001164595, intron 3 of 9) L1PA16|LINE|L1 -32945 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 166.5-63 chr9 35929548 35929913 + 0.833333 NA Intergenic Intergenic 20240 NM_001348107 158376 Hs.302677 NM_001348107 ENSG00000235387 SPAAR LINC00961|SPAR small regulatory polypeptide of amino acid response protein-coding 138.833-27 chr16 12653181 12653419 + 0.833333 NA Intergenic Intergenic -67021 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 128.333-88 chr4 53174579 53174834 + 0.833333 NA intron (NM_152540, intron 4 of 8) intron (NM_152540, intron 4 of 8) 191355 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 383.333 chr1 229922126 229922918 + 0.833333 NA Intergenic Intergenic -28614 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 311.667-2 chr2 28119546 28120446 + 0.833333 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 86965 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 189-7 chr16 75075203 75075645 + 0.833333 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 41348 NM_194436 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLACD|DLD lactate dehydrogenase D protein-coding 292.667-13 chr21 23175923 23176428 + 0.833333 NA Intergenic Intergenic 96891 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 133.667-76 chr5 174716863 174717232 + 0.833333 NA Intergenic MIR|SINE|MIR -7535 NM_001363626 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 168.333-62 chr9 69149105 69149531 + 0.833333 NA intron (NM_001369871, intron 1 of 24) intron (NM_001369871, intron 1 of 24) -24737 NM_201629 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 168.833-21 chr18 46226077 46226457 + 0.833333 NA intron (NM_001008239, intron 2 of 3) intron (NM_001008239, intron 2 of 3) 52233 NM_145055 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|Ark2N|RNF111L1 chromosome 18 open reading frame 25 protein-coding 192.333-38 chr4 35692967 35693303 + 0.833333 NA Intergenic Intergenic 550804 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 362.667-2 chrX 96242755 96243534 + 0.833333 NA Intergenic Intergenic 94758 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 156.5-90 chr9 88570724 88570944 + 0.833333 NA intron (NM_145283, intron 1 of 2) AluSx|SINE|Alu 35656 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 202.667-11 chr14 40344714 40345079 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -609815 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 274.167-3 chr4 57057487 57058005 + 0.833333 NA intron (NM_001553, intron 1 of 4) intron (NM_001553, intron 1 of 4) -52016 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 132.5-76 chr5 133444451 133444922 + 0.833333 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -16980 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 121.5-92 chr6 85767680 85767895 + 0.833333 NA Intergenic Intergenic -89054 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 241.833-3 chr10 50514547 50514982 + 0.833333 NA intron (NM_147156, intron 3 of 10) intron (NM_147156, intron 3 of 10) 109192 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 189.5-55 chr7 48362827 48363239 + 0.833333 NA intron (NM_152701, intron 31 of 61) L1M7|LINE|L1 191575 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 193-10 chr11 46218306 46218745 + 0.833333 NA Intergenic Intergenic 46570 NR_120565 101928894 Hs.552679 NR_120565 ENSG00000255314 LOC101928894 - uncharacterized LOC101928894 ncRNA 220.667-44 chr8 132573238 132573629 + 0.833333 NA intron (NR_135913, intron 10 of 10) intron (NR_135913, intron 10 of 10) -11954 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 221.833-19 chr4 48361484 48361986 + 0.833333 NA intron (NM_020846, intron 1 of 7) L1MEc|LINE|L1 20206 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 211.833-4 chr10 41783558 41783971 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 584281 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 144.833-16 chr12 14284934 14285288 + 0.833333 NA Intergenic AluY|SINE|Alu -80521 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 169.667-24 chr14 71112451 71112740 + 0.833333 NA 3' UTR (NM_001308160, exon 34 of 34) 3' UTR (NM_001308160, exon 34 of 34) 205136 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 145.167-55 chr4 185035306 185035573 + 0.833333 NA Intergenic L1ME3B|LINE|L1 -16457 NR_147059 101928877 Hs.246506 NR_147059 ENSG00000250754 LINC02436 - long intergenic non-protein coding RNA 2436 ncRNA 203-17 chr19 28458814 28459097 + 0.833333 NA intron (NR_110759, intron 7 of 9) MER34|LTR|ERV1 -147733 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 203.5-17 chr18 31791791 31792243 + 0.833333 NA Intergenic LTR104_Mam|LTR|Gypsy -31137 NM_001034172 147407 Hs.567708 NM_001034172 ENSG00000141437 SLC25A52 MCART2 solute carrier family 25 member 52 protein-coding 225.167-27 chr7 104698789 104699311 + 0.833333 NA intron (NM_199000, intron 1 of 2) L1MB3|LINE|L1 105042 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 127-66 chr3 80792686 80792961 + 0.833333 NA Intergenic 7SLRNA|srpRNA|srpRNA 22119 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 199.167-16 chr17 76308415 76308865 + 0.833333 NA promoter-TSS (NR_130649) promoter-TSS (NR_130649) -960 NR_130649 84074 Hs.252739 NM_032134 ENSG00000129646 QRICH2 SPGF35 glutamine rich 2 protein-coding 193.5-43 chr5 28071375 28071821 + 0.833333 NA Intergenic L1MC|LINE|L1 216067 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 145.167-24 chr15 47044369 47044567 + 0.833333 NA Intergenic MER4B|LTR|ERV1 -139621 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 177.167-9 chr15 39786039 39786271 + 0.833333 NA TTS (NR_135665) TTS (NR_135665) 3249 NR_135665 105370941 Hs.587843 NR_135665 ENSG00000261136 LOC105370941 - uncharacterized LOC105370941 ncRNA 164.667-49 chr3 181591905 181592238 + 0.833333 NA intron (NR_075091, intron 4 of 7) L1P4|LINE|L1 -18263 NR_004053 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 126.333-102 chr7 63128562 63128813 + 0.833333 NA Intergenic AluSx|SINE|Alu 175369 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 145-100 chrX 87037618 87037939 + 0.833333 NA Intergenic L1M5|LINE|L1 -480024 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 216.667-17 chr15 25567528 25567831 + 0.833333 NA Intergenic MER31B|LTR|ERV1 -128623 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 184-52 chr5 118040945 118041307 + 0.833333 NA intron (NR_104997, intron 2 of 2) UCON22|Unknown|Unknown -241448 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 162.667-22 chr14 69216471 69216798 + 0.833333 NA intron (NR_034165, intron 4 of 10) L1ME3B|LINE|L1 24868 NM_001193362 55218 Hs.533878 NM_018199 ENSG00000081177 EXD2 C14orf114|EXDL2 exonuclease 3'-5' domain containing 2 protein-coding 141-57 chr3 5577356 5577687 + 0.833333 NA Intergenic (TTAT)n|Simple_repeat|Simple_repeat -327266 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 362.167-3 chr11 79700820 79701265 + 0.833333 NA Intergenic L1PREC2|LINE|L1 -260012 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 166.5-17 chr12 130972314 130972606 + 0.833333 NA intron (NM_198827, intron 4 of 24) MER121|DNA|hAT? 18553 NM_001330497 283383 Hs.719239 NM_198827 ENSG00000111452 ADGRD1 GPR133|PGR25 adhesion G protein-coupled receptor D1 protein-coding 124.333-20 chr12 74958348 74958652 + 0.833333 NA Intergenic Intergenic 251248 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 115-6 chr1 227645506 227645705 + 0.833333 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 52102 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 237.167-8 chr16 75176712 75177190 + 0.833333 NA Intergenic L1MA8|LINE|L1 27900 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 163.833-4 chr1 184068758 184069184 + 0.833333 NA intron (NR_125335, intron 4 of 5) intron (NR_125335, intron 4 of 5) 17241 NM_001300764 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 113.333-103 chr8 77844465 77844840 + 0.833333 NA Intergenic Intergenic 393955 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 113.5-15 chr10 73341453 73341644 + 0.833333 NA exon (NM_001350933, exon 6 of 27) exon (NM_001350933, exon 6 of 27) 17206 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 154-4 chr1 172223100 172223378 + 0.833333 NA intron (NR_146559, intron 15 of 20) L1MA6|LINE|L1 -78404 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 126.167-7 chr1 186982284 186982467 + 0.833333 NA intron (NM_024420, intron 17 of 17) MIRb|SINE|MIR -110467 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 196.833-13 chr2 46215349 46215696 + 0.833333 NA Intergenic L1M1|LINE|L1 -81885 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 187.333-31 chr2 29049427 29049830 + 0.833333 NA intron (NM_001321538, intron 18 of 18) intron (NM_001321538, intron 18 of 18) 24895 NM_001029883 388939 Hs.354243 NM_001029883 ENSG00000179270 PCARE C2orf71|RP54 photoreceptor cilium actin regulator protein-coding 165.167-3 chr1 238918592 238918923 + 0.833333 NA Intergenic L1ME1|LINE|L1 -432740 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 117.833-44 chr2 70612043 70612244 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -58317 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 148.833-48 chr5 19744526 19744803 + 0.833333 NA intron (NM_001349559, intron 4 of 12) L1MEj|LINE|L1 141608 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 149 chr1 8387568 8387964 + 0.833333 NA intron (NM_001042681, intron 12 of 22) L1ME3E|LINE|L1 36066 NM_001042682 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 139.667-26 chr14 65664234 65664520 + 0.833333 NA intron (NM_004480, intron 5 of 9) intron (NM_004480, intron 5 of 9) 193275 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 156-6 chr1 183975501 183975915 + 0.833333 NA intron (NM_015101, intron 2 of 11) intron (NM_015101, intron 2 of 11) 62020 NM_001303420 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|ColGalT 2|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 158-57 chr8 118638202 118638453 + 0.833333 NA intron (NR_038210, intron 2 of 4) (GT)n|Simple_repeat|Simple_repeat -16364 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 197.5-44 chr5 35179333 35179744 + 0.833333 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) 50949 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 154.5-74 chr9 28203740 28203958 + 0.833333 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 515456 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 176.167-48 chr9 69206785 69207089 + 0.833333 NA intron (NM_001170416, intron 1 of 22) L1ME3F|LINE|L1 1782 NM_001170416 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 224-29 chr3 107970130 107970539 + 0.833333 NA Intergenic MER5A1|DNA|hAT-Charlie 87129 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 208.5-23 chr2 58067028 58067353 + 0.833333 NA intron (NM_001288836, intron 3 of 13) MLT2A2|LTR|ERVL 20478 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 165.333-34 chr20 9011877 9012156 + 0.833333 NA Intergenic L2b|LINE|L2 -57038 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 200.333-16 chr18 72716140 72716577 + 0.833333 NA Intergenic Intergenic 137024 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 143.333-62 chr4 96619374 96619794 + 0.833333 NA intron (NR_147149, intron 3 of 3) L1MA4|LINE|L1 308881 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 178.667-57 chr6 22795892 22796305 + 0.833333 NA Intergenic L1PA16|LINE|L1 -78174 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 167.833-6 chr11 103438585 103438878 + 0.833333 NA intron (NM_001377, intron 85 of 88) L2b|LINE|L2 329305 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 191.667-20 chr2 60275064 60275343 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR 107833 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 204.333-2 chr10 32631690 32632212 + 0.833333 NA intron (NM_001321115, intron 19 of 43) L1M4|LINE|L1 185811 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 136.333-35 chr16 23402191 23402424 + 0.833333 NA intron (NM_153603, intron 13 of 16) HAL1b|LINE|L1 50882 NM_153603 91949 Hs.185807 NM_153603 ENSG00000168434 COG7 CDG2E component of oligomeric golgi complex 7 protein-coding 350.167-3 chr18 955757 956390 + 0.833333 NA Intergenic Intergenic -28080 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 140.333-17 chr13 23810092 23810397 + 0.833333 NA intron (NM_005932, intron 14 of 18) intron (NM_005932, intron 14 of 18) -78624 NM_001014442 542767 Hs.642624 NM_001014442 PCOTH C1QTNF9B-AS1 Pro-X-Gly collagen triple helix like repeat containing protein-coding 294.667-12 chr6 140738448 140738966 + 0.833333 NA Intergenic L1PB3|LINE|L1 54893 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 113.167-76 chr8 125117645 125117889 + 0.833333 NA intron (NM_001349486, intron 3 of 7) intron (NM_001349486, intron 3 of 7) 25907 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 148.833-53 chr6 16736991 16737279 + 0.833333 NA non-coding (NR_152113, exon 3 of 3) non-coding (NR_152113, exon 3 of 3) 23049 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 215.667-21 chr18 12105668 12106000 + 0.833333 NA intron (NM_001277333, intron 7 of 13) intron (NM_001277333, intron 7 of 13) 11991 NM_001277333 342850 Hs.448906 NM_001277333 ENSG00000181626 ANKRD62 DKFZp779B1634 ankyrin repeat domain 62 protein-coding 262.167-14 chr22 43313844 43314298 + 0.833333 NA intron (NM_173050, intron 3 of 21) intron (NM_173050, intron 3 of 21) 29301 NM_173050 80274 Hs.133995 NM_152514 ENSG00000159307 SCUBE1 - signal peptide, CUB domain and EGF like domain containing 1 protein-coding 180.5-53 chr9 131720884 131721203 + 0.833333 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) -11201 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 127.5-6 chr1 196859199 196859482 + 0.833333 NA Intergenic Intergenic -28712 NM_001201550 10877 Hs.710100 NM_006684 ENSG00000134365 CFHR4 CFHL4|FHR-4|FHR4 complement factor H related 4 protein-coding 180.667-58 chr5 60956176 60956465 + 0.833333 NA intron (NM_174889, intron 1 of 3) L1M3|LINE|L1 11115 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 118.5-78 chr5 10091728 10091927 + 0.833333 NA Intergenic MLT1H|LTR|ERVL-MaLR 158061 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 115-9 chr10 19636476 19636661 + 0.833333 NA intron (NM_001142308, intron 36 of 39) intron (NM_001142308, intron 36 of 39) 91982 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 228.333-16 chr2 223321415 223321762 + 0.833333 NA Intergenic Intergenic 269658 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 273.333-23 chr7 79000922 79001377 + 0.833333 NA intron (NM_001301128, intron 2 of 20) AluSc|SINE|Alu -7839 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 279.667-9 chr19 51209893 51210381 + 0.833333 NA Intergenic Intergenic -3128 NR_107041 102465873 NR_107041 ENSG00000278617 MIR8074 hsa-mir-8074 microRNA 8074 ncRNA 278.167-7 chr2 196867287 196868006 + 0.833333 NA intron (NM_001321099, intron 20 of 27) intron (NM_001321099, intron 20 of 27) -57370 NM_213608 401027 Hs.245666 NM_213608 ENSG00000187944 C2orf66 IIDS6411|UNQ6411 chromosome 2 open reading frame 66 protein-coding 162.167-24 chr2 196345325 196345634 + 0.833333 NA intron (NM_020760, intron 2 of 28) intron (NM_020760, intron 2 of 28) 16698 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 207-45 chr6 156997589 156997984 + 0.833333 NA intron (NM_020732, intron 5 of 19) intron (NM_020732, intron 5 of 19) -38641 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 162-59 chr5 164226931 164227233 + 0.833333 NA Intergenic Intergenic 240320 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 150.167-38 chr21 28819260 28819486 + 0.833333 NA Intergenic Intergenic 65994 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 162.167 chr1 47972907 47973135 + 0.833333 NA intron (NM_001194986, intron 2 of 6) intron (NM_001194986, intron 2 of 6) 24364 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 214.5-14 chr17 19798109 19798689 + 0.833333 NA intron (NM_014683, intron 17 of 26) intron (NM_014683, intron 17 of 26) -50101 NM_000691 218 Hs.531682 NM_000691 ENSG00000108602 ALDH3A1 ALDH3|ALDHIII aldehyde dehydrogenase 3 family member A1 protein-coding 199.333-28 chr3 135764211 135764684 + 0.833333 NA Intergenic Intergenic -201281 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 204.667-23 chr14 49335126 49335555 + 0.833333 NA Intergenic Intergenic 251040 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 183.5-33 chr2 96594576 96594894 + 0.833333 NA non-coding (NR_047657, exon 21 of 21) non-coding (NR_047657, exon 21 of 21) 43256 NR_047658 55683 Hs.516341 NM_017991 ENSG00000114982 KANSL3 KIAA1310|NSL3|Rcd1 KAT8 regulatory NSL complex subunit 3 protein-coding 180-6 chr10 122623570 122623837 + 0.833333 NA intron (NM_004406, intron 28 of 39) L1MB5|LINE|L1 -49179 NM_001364461 112577516 NM_001364461 LOC112577516 - carbohydrate-binding protein AQN-1-like protein-coding 117.333-59 chr20 56497995 56498202 + 0.833333 NA intron (NR_160308, intron 4 of 6) intron (NR_160308, intron 4 of 6) -26631 NM_001012971 200232 Hs.504907 NM_001012971 ENSG00000124103 FAM209A C20orf106|dJ1153D9.3 family with sequence similarity 209 member A protein-coding 153.167-19 chr15 61966941 61967253 + 0.833333 NA intron (NM_001018088, intron 29 of 81) L3|LINE|CR1 93350 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 154.333-18 chr12 87063400 87063733 + 0.833333 NA Intergenic L1PA15|LINE|L1 -224566 NM_001351285 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 186.833-7 chr12 3612471 3612803 + 0.833333 NA Intergenic Intergenic -119818 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 188-13 chr11 15291584 15291955 + 0.833333 NA Intergenic MIRb|SINE|MIR 142667 NM_001278315 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 116.833-6 chr10 56391990 56392240 + 0.833333 NA Intergenic Intergenic -30842 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 183.167-16 chr14 71645783 71646158 + 0.833333 NA intron (NM_001354286, intron 8 of 24) intron (NM_001354286, intron 8 of 24) 59672 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 128.833-41 chr2 16882970 16883175 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -217238 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 150.667-61 chr22 49882945 49883247 + 0.833333 NA intron (NM_014838, intron 1 of 1) intron (NM_014838, intron 1 of 1) 29252 NM_014838 9889 Hs.475208 NM_014838 ENSG00000100426 ZBED4 - zinc finger BED-type containing 4 protein-coding 229-44 chr7 85545161 85545717 + 0.833333 NA Intergenic Intergenic 124317 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 184.667-45 chr6 129921916 129922395 + 0.833333 NA Intergenic Intergenic -60840 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 161.167-40 chr4 116699 116939 + 0.833333 NA Intergenic Intergenic -7657 NR_110529 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 161-59 chr6 48894777 48895022 + 0.833333 NA Intergenic Intergenic 568354 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 240.833-3 chr1 166787260 166787774 + 0.833333 NA Intergenic L1PA14|LINE|L1 -51958 NM_001314014 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 148.833-37 chr20 53905149 53905509 + 0.833333 NA Intergenic Intergenic -29620 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 137.667-62 chr20 22443919 22444151 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -23392 NR_027089 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 133.667-98 chr8 124521166 124521439 + 0.833333 NA intron (NM_001146160, intron 1 of 9) intron (NM_001146160, intron 1 of 9) -12726 NR_106903 102466200 NR_106903 ENSG00000284087 MIR6844 hsa-mir-6844 microRNA 6844 ncRNA 170.667-55 chr5 39017727 39018278 + 0.833333 NA intron (NM_001285439, intron 3 of 38) intron (NM_001285439, intron 3 of 38) 56397 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 167.833-12 chr13 48458615 48459005 + 0.833333 NA intron (NM_000321, intron 19 of 26) intron (NM_000321, intron 19 of 26) -14141 NM_005767 10161 Hs.123464 NM_005767 ENSG00000139679 LPAR6 ARWH1|HYPT8|LAH3|P2RY5|P2Y5 lysophosphatidic acid receptor 6 protein-coding 129.5-78 chr6 81867700 81867949 + 0.833333 NA intron (NR_149135, intron 3 of 3) intron (NR_149135, intron 3 of 3) -53632 NR_126363 101928770 Hs.586239 NR_126363 ENSG00000224995 LINC01526 Lnc-FAM46A-1 long intergenic non-protein coding RNA 1526 ncRNA 248.167-9 chr12 12119695 12120185 + 0.833333 NA 3' UTR (NM_002336, exon 23 of 23).2 3' UTR (NM_002336, exon 23 of 23).2 7988 NR_036262 100422885 NR_036262 ENSG00000283498 MIR1244-2 - microRNA 1244-2 ncRNA 113.833 chr1 10998361 10998578 + 0.833333 NA Intergenic MIR|SINE|MIR -14153 NM_007375 23435 Hs.300624 NM_007375 ENSG00000120948 TARDBP ALS10|TDP-43 TAR DNA binding protein protein-coding 213.833-21 chr3 44373737 44374116 + 0.833333 NA intron (NM_001282915, intron 5 of 10) intron (NM_001282915, intron 5 of 10) 35160 NM_001282914 285343 Hs.55131 NM_173826 ENSG00000179152 TCAIM C3orf23|TOAG-1|TOAG1 T cell activation inhibitor, mitochondrial protein-coding 175.833-5 chr10 32191653 32191989 + 0.833333 NA Intergenic L1M5|LINE|L1 -135396 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 212.5-9 chr17 74694031 74694424 + 0.833333 NA TTS (NM_001289083) TTS (NM_001289083) 18696 NM_001289085 146722 Hs.567706 NM_139018 ENSG00000186074 CD300LF CD300f|CLM-1|CLM1|IREM-1|IREM1|IgSF13|LMIR3|NKIR CD300 molecule like family member f protein-coding 224.333-5 chr12 80591042 80591437 + 0.833333 NA intron (NM_001145026, intron 26 of 44) AluJb|SINE|Alu -116395 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 366.333-3 chr17 61865495 61866270 + 0.833333 NA 3' UTR (NM_020748, exon 25 of 25) 3' UTR (NM_020748, exon 25 of 25) -2323 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 362 chr8 108349761 108350410 + 0.833333 NA Intergenic L1MEd|LINE|L1 -93498 NM_001329493 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 249.667-28 chr3 76389455 76390068 + 0.833333 NA Intergenic Intergenic -604212 NM_001290210 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 148-54 chr3 174815448 174815698 + 0.833333 NA Intergenic AluJo|SINE|Alu -43761 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 117.167-93 chr8 79069220 79069438 + 0.833333 NA Intergenic Intergenic 231800 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 151.333-100 chr9 131440480 131440793 + 0.833333 NA intron (NM_013318, intron 4 of 30) L1ME4b|LINE|L1 10546 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline rich coiled-coil 2B protein-coding 190.833-40 chr7 105108981 105109429 + 0.833333 NA exon (NM_018682, exon 22 of 26) exon (NM_018682, exon 22 of 26) 95000 NM_182931 55904 Hs.592262 NM_018682 ENSG00000005483 KMT2E HDCMC04P|MLL5|NKp44L lysine methyltransferase 2E protein-coding 258.5-17 chr5 116064146 116064874 + 0.833333 NA Intergenic L1MDa|LINE|L1 13044 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 183.333-26 chr2 21121899 21122277 + 0.833333 NA Intergenic L1MEd|LINE|L1 -1898 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 166.167-11 chr14 63506467 63506758 + 0.833333 NA intron (NM_001354926, intron 2 of 2) L1MB8|LINE|L1 1626 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 195.667-43 chr8 79517358 79517718 + 0.833333 NA Intergenic L1PA6|LINE|L1 -93579 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 137.167-49 chr4 146632757 146632980 + 0.833333 NA Intergenic Intergenic -6025 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 125.167-8 chr10 14380904 14381107 + 0.833333 NA Intergenic MIRb|SINE|MIR 2272 NR_036181 100422843 NR_036181 ENSG00000266321 MIR4293 - microRNA 4293 ncRNA 182-10 chr11 7625291 7625799 + 0.833333 NA intron (NM_001351860, intron 5 of 21) intron (NM_001351860, intron 5 of 21) 19811 NM_001256569 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 252.667 chr1 118697925 118698473 + 0.833333 NA Intergenic Tigger2|DNA|TcMar-Tigger 290144 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 173.667-32 chr2 241332303 241332671 + 0.833333 NA intron (NM_001349302, intron 3 of 12) L1ME2|LINE|L1 16322 NM_001321030 4735 Hs.721234 NM_004404 ENSG00000168385 SEPTIN2 DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|hNedd5 septin 2 protein-coding 164.333-25 chr17 61047322 61047567 + 0.833333 NA intron (NM_001330413, intron 20 of 25) intron (NM_001330413, intron 20 of 25) 320260 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 201.667-50 chr8 121274745 121275012 + 0.833333 NA Intergenic L1PA16|LINE|L1 -364468 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 116-80 chr5 170013017 170013243 + 0.833333 NA intron (NR_156756, intron 33 of 52) intron (NR_156756, intron 33 of 52) -15358 NR_039609 100616498 NR_039609 ENSG00000263831 MIR378E mir-378e microRNA 378e ncRNA 122.5-9 chr10 22455457 22455709 + 0.833333 NA Intergenic Intergenic -17654 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 167-10 chr10 88453441 88453900 + 0.833333 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 129648 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 121.5-115 chr9 38121413 38121756 + 0.833333 NA Intergenic Intergenic -52357 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 148.167-42 chr2 173508962 173509211 + 0.833333 NA Intergenic MER5A1|DNA|hAT-Charlie 154214 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 116.333-40 chr15 48240005 48240158 + 0.833333 NA intron (NM_001184832, intron 9 of 26) (AT)n|Simple_repeat|Simple_repeat 33779 NM_001184832 6557 Hs.123116 NM_000338 ENSG00000074803 SLC12A1 BSC1|NKCC2 solute carrier family 12 member 1 protein-coding 183.167-23 chr2 36409343 36409578 + 0.833333 NA intron (NM_016441, intron 2 of 16) intron (NM_016441, intron 2 of 16) 53682 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 131.833-11 chr12 39975706 39975914 + 0.833333 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 130271 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 133.333-78 chr3 104506799 104507270 + 0.833333 NA Intergenic L1ME3G|LINE|L1 -859679 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 134.667-111 chr8 121662130 121662421 + 0.833333 NA Intergenic Intergenic -20835 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 304.667-4 chr10 92235025 92235511 + 0.833333 NA intron (NM_001178137, intron 2 of 9) AluSx1|SINE|Alu 8011 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 157-40 chr2 156887222 156887448 + 0.833333 NA Intergenic MIR1_Amn|SINE|MIR -370370 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 163-5 chr1 193683373 193683742 + 0.833333 NA Intergenic Intergenic 378812 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 206-19 chr20 7606375 7606991 + 0.833333 NA Intergenic L1MA2|LINE|L1 235075 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 238.833-13 chr6 49865607 49865975 + 0.833333 NA intron (NM_001205220, intron 1 of 7) intron (NM_001205220, intron 1 of 7) 744 NM_170609 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 309.666 chr10 44317981 44318746 + 0.833333 NA Intergenic Intergenic 25613 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 158.833-27 chr2 24688248 24688494 + 0.833333 NA intron (NM_001362950, intron 8 of 23) L1PREC2|LINE|L1 103894 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 277.833-4 chr2 178921491 178921864 + 0.833333 NA intron (NM_001316745, intron 6 of 11) MER103C|DNA|hAT-Charlie -114254 NM_133378 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 131.833-70 chr8 113355986 113356256 + 0.833333 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) 21031 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 264.667-16 chr2 119361300 119361793 + 0.833333 NA intron (NM_001322329, intron 1 of 6) MER2|DNA|TcMar-Tigger 5196 NM_001322330 130355 Hs.99488 NM_001017927 ENSG00000186132 C2orf76 AIM29 chromosome 2 open reading frame 76 protein-coding 138-66 chr21 32748645 32748904 + 0.833333 NA intron (NR_027873, intron 10 of 17) intron (NR_027873, intron 10 of 17) 20660 NR_038880 100506215 Hs.657123 NR_038879 ENSG00000238197 PAXBP1-AS1 GCFC1-AS1 PAXBP1 antisense RNA 1 ncRNA 205-35 chr5 80600906 80601196 + 0.833333 NA Intergenic Intergenic 21473 NR_125754 103689917 Hs.740035 NR_125754 ENSG00000251221 LINC01337 TCONS_00009713 long intergenic non-protein coding RNA 1337 ncRNA 242.167-13 chr3 47358608 47359036 + 0.833333 NA Intergenic MSTB-int|LTR|ERVL-MaLR -22199 NM_001304482 25930 Hs.25524 NM_015466 ENSG00000076201 PTPN23 HD-PTP|HDPTP|PTP-TD14 protein tyrosine phosphatase non-receptor type 23 protein-coding 214.667-16 chr18 7112117 7112550 + 0.833333 NA intron (NM_005559, intron 1 of 62) intron (NM_005559, intron 1 of 62) 5464 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 167.333-2 chr1 63953033 63953384 + 0.833333 NA intron (NM_005012, intron 1 of 8) MIRb|SINE|MIR 158997 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 116.333-96 chr7 14002370 14002615 + 0.833333 NA Intergenic MIRb|SINE|MIR -11067 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 153.667-18 chr12 50671533 50671774 + 0.833333 NA intron (NM_173602, intron 5 of 37) intron (NM_173602, intron 5 of 37) -92448 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 173.833-32 chr20 40320101 40320375 + 0.833333 NA Intergenic Intergenic 315777 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 137.5-64 chr3 183350600 183351106 + 0.833333 NA intron (NM_015078, intron 3 of 29) AluY|SINE|Alu 77416 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 156-16 chr11 102550371 102550634 + 0.833333 NA Intergenic MER97d|DNA|hAT-Tip100 -19755 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 232.167 chr1 81696811 81697139 + 0.833333 NA intron (NM_001366008, intron 3 of 26) L3|LINE|CR1 -2795 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 170.167-43 chr4 101493012 101493280 + 0.833333 NA Intergenic L1PA15-16|LINE|L1 145369 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 145.167-73 chr8 60600008 60600300 + 0.833333 NA intron (NM_002865, intron 6 of 7) L1MD1|LINE|L1 -78586 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 236.5-3 chr1 165849587 165849942 + 0.833333 NA intron (NM_012474, intron 1 of 6) intron (NM_012474, intron 1 of 6) 22150 NM_001363568 7371 Hs.458360 NM_012474 ENSG00000143179 UCK2 TSA903|UK|UMPK uridine-cytidine kinase 2 protein-coding 162.667-10 chr11 112280061 112280380 + 0.833333 NA intron (NR_126004, intron 1 of 3) L3|LINE|CR1 9471 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 215.5-30 chr4 88212009 88212520 + 0.833333 NA intron (NM_001348985, intron 1 of 16) L2a|LINE|L2 19362 NM_001257386 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 133.333-68 chr22 27771568 27771757 + 0.833333 NA intron (NM_002430, intron 1 of 1) MER58B|DNA|hAT-Charlie 30094 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 187.667-17 chr14 25786030 25786371 + 0.833333 NA Intergenic L1ME1|LINE|L1 -735903 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 276-11 chr4 20413375 20413817 + 0.833333 NA intron (NM_001289135, intron 4 of 35) L1M4|LINE|L1 21407 NR_037876 100505893 Hs.665305 NR_037876 ENSG00000248228 SLIT2-IT1 - SLIT2 intronic transcript 1 ncRNA 261-21 chr5 114753339 114753768 + 0.833333 NA intron (NR_130785, intron 1 of 12) L1MEc|LINE|L1 19860 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 187.333-35 chr2 68093443 68093692 + 0.833333 NA Intergenic Intergenic -30563 NM_001190263 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 120.333-102 chr6 77818333 77818636 + 0.833333 NA intron (NM_001282136, intron 3 of 4) intron (NM_001282136, intron 3 of 4) 165445 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 201.667-34 chr5 167240736 167241081 + 0.833333 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) -72507 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 120.167-20 chr14 75873781 75873934 + 0.833333 NA intron (NM_015072, intron 29 of 31) intron (NM_015072, intron 29 of 31) 108138 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 179-37 chr4 37340753 37341025 + 0.833333 NA intron (NM_001144990, intron 2 of 6) MIR|SINE|MIR 96146 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 242-21 chr7 32401015 32401701 + 0.833333 NA intron (NM_001322059, intron 1 of 17) AluSc8|SINE|Alu 26866 NM_001322059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 125.5-16 chr12 31649135 31649354 + 0.833333 NA intron (NM_001135864, intron 1 of 3) MER2|DNA|TcMar-Tigger 2084 NM_001135864 254013 Hs.740628 NM_173802 ENSG00000139160 ETFBKMT C12orf72|ETFB-KMT|METTL20 electron transfer flavoprotein subunit beta lysine methyltransferase protein-coding 265 chr1 68867448 68867804 + 0.833333 NA Intergenic AluSz|SINE|Alu -188272 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 222.5-23 chr4 88090703 88091012 + 0.833333 NA 3' UTR (NM_001348985, exon 17 of 17) 3' UTR (NM_001348985, exon 17 of 17) 67782 NM_004827 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 223.667-23 chr5 18423269 18423751 + 0.833333 NA Intergenic L1MC1|LINE|L1 616236 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 123.167-72 chr4 80765044 80765332 + 0.833333 NA intron (NM_001206997, intron 4 of 6) L1MEd|LINE|L1 -265520 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 177.833-53 chrX 113043286 113043719 + 0.833333 NA intron (NR_110399, intron 1 of 3) L1MA3|LINE|L1 775 NR_110399 101928437 Hs.640112 NR_110399 LOC101928437 - uncharacterized LOC101928437 ncRNA 206.833-15 chr22 28420615 28420866 + 0.833333 NA intron (NM_001145418, intron 2 of 22) AluSx|SINE|Alu -39129 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 147.333-57 chr3 102408591 102408903 + 0.833333 NA Intergenic L4_C_Mam|LINE|RTE-X -26268 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 227.333 chr1 111786022 111786571 + 0.833333 NA intron (NM_172198, intron 3 of 6) Tigger15a|DNA|TcMar-Tigger 30395 NM_007204 11218 Hs.591405 NM_007204 ENSG00000064703 DDX20 DP103|GEMIN3 DEAD-box helicase 20 protein-coding 273-9 chr4 84190049 84190636 + 0.833333 NA intron (NR_125909, intron 5 of 8) L2a|LINE|L2 108827 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 221.5-7 chr10 110838792 110839214 + 0.833333 NA 3' UTR (NM_001134363, exon 14 of 14) 3' UTR (NM_001134363, exon 14 of 14) 31901 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 242.167-11 chr2 132466728 132467142 + 0.833333 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 33224 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 131-57 chr5 122572283 122572589 + 0.833333 NA Intergenic Intergenic 12164 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 169-19 chr15 72245833 72246106 + 0.833333 NA intron (NR_136599, intron 19 of 22) intron (NR_136599, intron 19 of 22) -14345 NM_001206797 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase M1/2 protein-coding 114.167-6 chr10 64431918 64432212 + 0.833333 NA Intergenic Intergenic -393463 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 298.833-9 chr7 33481183 33481757 + 0.833333 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 351906 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 173.333-62 chr6 136236293 136236552 + 0.833333 NA intron (NM_001099286, intron 6 of 7) L2a|LINE|L2 13889 NM_001099286 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 121.833-79 chrX 40347502 40347727 + 0.833333 NA Intergenic L1M4|LINE|L1 84697 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 140.167-9 chr11 66258736 66259056 + 0.833333 NA intron (NM_001134774, intron 2 of 14) intron (NM_001134774, intron 2 of 14) 1193 NM_001134776 64837 Hs.280792 NM_022822 ENSG00000174996 KLC2 - kinesin light chain 2 protein-coding 174.5-25 chr21 36024792 36025178 + 0.833333 NA Intergenic Intergenic 19665 NR_110419 100996609 Hs.742062 NR_110419 LINC01436 - long intergenic non-protein coding RNA 1436 ncRNA 199.833-12 chr16 7911311 7911662 + 0.833333 NA Intergenic Tigger2a|DNA|TcMar-Tigger 578641 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 194.833-5 chr10 100820996 100821300 + 0.833333 NA intron (NM_003988, intron 7 of 10) intron (NM_003988, intron 7 of 10) 75437 NM_003987 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 154.167-40 chr22 31981408 31981893 + 0.833333 NA intron (NR_149128, intron 3 of 4) L1MB5|LINE|L1 10827 NR_149128 105372999 Hs.512525 NR_149128 LINC02558 - long intergenic non-protein coding RNA 2558 ncRNA 149.667-28 chr16 61615290 61615658 + 0.833333 NA Intergenic Intergenic 420964 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 197.333-54 chr7 37224823 37225166 + 0.833333 NA exon (NM_014800, exon 9 of 22) exon (NM_014800, exon 9 of 22) 128674 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 227.833-10 chr2 138117157 138117692 + 0.833333 NA Intergenic Intergenic 15540 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 138.333-32 chr14 76028975 76029236 + 0.833333 NA intron (NR_045664, intron 3 of 7) L1PA17|LINE|L1 43342 NM_001255995 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 147.5-44 chr2 69541613 69541905 + 0.833333 NA intron (NM_014911, intron 5 of 21) MER5A|DNA|hAT-Charlie -21588 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 338.334-6 chrX 56257271 56257929 + 0.833333 NA intron (NM_001324100, intron 2 of 3) L1PA16|LINE|L1 24442 NM_001324100 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 305.333-5 chr15 79859127 79859718 + 0.833333 NA intron (NR_037654, intron 2 of 2) L1MD|LINE|L1 37575 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 175.5-48 chr5 26534742 26535135 + 0.833333 NA Intergenic Intergenic 503648 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 122.5-69 chr5 10503745 10504038 + 0.833333 NA Intergenic MER77|LTR|ERVL -1163 NR_104606 101929412 Hs.508287 NR_104606 ENSG00000249396 LINC02212 - long intergenic non-protein coding RNA 2212 ncRNA 154.167-64 chr9 36784691 36785015 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR 38746 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 242.667-6 chr11 94507356 94507729 + 0.833333 NA Intergenic L1ME3|LINE|L1 -4919 NM_001190462 643037 NM_001190462 ENSG00000257057 C11orf97 LINC01171 chromosome 11 open reading frame 97 protein-coding 172.333-20 chr12 111017099 111017385 + 0.833333 NA Intergenic AluSx|SINE|Alu -16923 NM_015267 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 129.5-34 chr18 2782812 2783273 + 0.833333 NA intron (NM_015295, intron 44 of 47) intron (NM_015295, intron 44 of 47) -63964 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 147.5-34 chr15 85432255 85432642 + 0.833333 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 51845 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 124.333-70 chr4 58015908 58016210 + 0.833333 NA Intergenic Intergenic 520269 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 118.667-99 chr6 40025020 40025256 + 0.833333 NA Intergenic Tigger3a|DNA|TcMar-Tigger -90676 NM_001358531 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 129.833-13 chr12 18163577 18163854 + 0.833333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -73522 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 140.167-22 chr15 57019737 57019988 + 0.833333 NA intron (NM_001322164, intron 3 of 19) LTR8B|LTR|ERV1 100417 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 187.167-42 chr8 27150743 27151159 + 0.833333 NA Intergenic MER95|LTR|ERV1 -101988 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 118.333-33 chr14 83544791 83545152 + 0.833333 NA Intergenic Intergenic 902339 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 126.167-26 chr15 51796425 51796606 + 0.833333 NA intron (NM_014548, intron 7 of 9) MER44D|DNA|TcMar-Tigger -33138 NM_014547 29766 Hs.4998 NM_014547 ENSG00000138594 TMOD3 UTMOD tropomodulin 3 protein-coding 127.167-23 chr11 113309767 113310109 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR -4645 NM_001352038 54970 Hs.288772 NM_017868 ENSG00000149292 TTC12 TPARM tetratricopeptide repeat domain 12 protein-coding 140.667-40 chr17 71575509 71575710 + 0.833333 NA Intergenic Intergenic -373430 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 186.833-29 chr3 137686494 137686794 + 0.833333 NA Intergenic Intergenic -77671 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 114.667-62 chr2 222886754 222886903 + 0.833333 NA intron (NM_001354159, intron 1 of 14) L1MC1|LINE|L1 25792 NM_203372 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 253 chr1 199236065 199236451 + 0.833333 NA intron (NR_147896, intron 3 of 3) L1M8|LINE|L1 87660 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 136.5-97 chr9 28336206 28336424 + 0.833333 NA intron (NM_001354574, intron 4 of 5) L1MD|LINE|L1 382990 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 239.5-6 chr10 24266900 24267457 + 0.833333 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) -8507 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 186.5-4 chr1 161777723 161778156 + 0.833333 NA intron (NM_007348, intron 1 of 15) MER117|DNA|hAT-Charlie 11619 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 234-7 chr10 113883243 113883656 + 0.833333 NA intron (NM_198514, intron 4 of 10) L1MB8|LINE|L1 28788 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 163.667-74 chrX 39677052 39677366 + 0.833333 NA Intergenic MLT1G|LTR|ERVL-MaLR 15993 NR_037501 100500822 NR_037501 ENSG00000263730 MIR3937 - microRNA 3937 ncRNA 297.833-7 chr3 166967219 166967677 + 0.833333 NA Intergenic L1MA6|LINE|L1 68765 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 123.5-55 chr3 140592128 140592376 + 0.833333 NA Intergenic Intergenic -83463 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 114.167-68 chr3 169092670 169092841 + 0.833333 NA intron (NM_001163999, intron 12 of 14) MIR|SINE|MIR 52768 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 238.167-12 chr2 32491830 32492258 + 0.833333 NA intron (NM_016252, intron 44 of 73) intron (NM_016252, intron 44 of 73) -40109 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 151-67 chr6 69716715 69717071 + 0.833333 NA intron (NM_001367272, intron 8 of 15) A-rich|Low_complexity|Low_complexity 79573 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 179-24 chr2 75726544 75726927 + 0.833333 NA Intergenic Intergenic -15820 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 166-39 chr3 70425973 70426336 + 0.833333 NA Intergenic MamGypsy2-I|LTR|Gypsy -113516 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 140.167-16 chr13 106346042 106346284 + 0.833333 NA Intergenic Intergenic -30401 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 213-10 chr16 10610501 10610851 + 0.833333 NA Intergenic AluJo|SINE|Alu -30078 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 113.333-91 chr5 120851363 120851543 + 0.833333 NA Intergenic Intergenic 319989 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 226.333-25 chr3 140260152 140260444 + 0.833333 NA intron (NM_022131, intron 2 of 16) L1MD|LINE|L1 248491 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 138.333-3 chr1 55756252 55756461 + 0.833333 NA Intergenic L1M4c|LINE|L1 188607 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 158.167-19 chr18 65423299 65423545 + 0.833333 NA Intergenic L1PA17|LINE|L1 -326830 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 292.167-5 chr3 129728203 129728781 + 0.833333 NA intron (NM_001349271, intron 2 of 4) AluSg|SINE|Alu -4379 NM_001349274 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 129.333-11 chr10 86384578 86384948 + 0.833333 NA Intergenic AluSp|SINE|Alu -17968 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 287.5-19 chr8 124338076 124338483 + 0.833333 NA intron (NM_194291, intron 1 of 6) intron (NM_194291, intron 1 of 6) 34420 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 239.833-20 chr7 50097927 50098257 + 0.833333 NA intron (NM_001161834, intron 1 of 8) intron (NM_001161834, intron 1 of 8) 2006 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 135.667-25 chr11 114209889 114210168 + 0.833333 NA intron (NM_006006, intron 4 of 6) MIRc|SINE|MIR -85785 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 216.833-17 chr20 34078785 34079085 + 0.833333 NA intron (NM_007367, intron 8 of 8) intron (NM_007367, intron 8 of 8) 29816 NR_039911 100616434 NR_039911 ENSG00000264616 MIR4755 mir-4755 microRNA 4755 ncRNA 159.833-42 chr6 162770949 162771220 + 0.833333 NA intron (NM_001080379, intron 1 of 4) intron (NM_001080379, intron 1 of 4) 43114 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 182.333-21 chr15 58592168 58592536 + 0.833333 NA 3' UTR (NM_001110, exon 16 of 16) 3' UTR (NM_001110, exon 16 of 16) -93617 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 128.333-119 chr8 132752258 132752534 + 0.833333 NA intron (NM_144649, intron 3 of 9) intron (NM_144649, intron 3 of 9) 8186 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 245-3 chr10 66474195 66474596 + 0.833333 NA intron (NM_001127384, intron 11 of 17) L1MA6|LINE|L1 -451641 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 171.167-7 chr1 231525004 231525210 + 0.833333 NA Intergenic L1MB8|LINE|L1 -3546 NR_028399 100303453 Hs.13318 NR_028393 ENSG00000270106 TSNAX-DISC1 - TSNAX-DISC1 readthrough (NMD candidate) ncRNA 286.667-2 chr11 38870432 38871040 + 0.833333 NA Intergenic Intergenic 221878 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 174.333-23 chr17 65666645 65667210 + 0.833333 NA intron (NM_001353129, intron 24 of 26) intron (NM_001353129, intron 24 of 26) -105279 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 145.833-74 chr7 52023002 52023256 + 0.833333 NA Intergenic L1MC4|LINE|L1 -629873 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 147-86 chr8 114161621 114161946 + 0.833333 NA Intergenic L1MA7|LINE|L1 -724844 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 170.5-46 chr3 57548156 57548395 + 0.833333 NA Intergenic LTR49-int|LTR|ERV1 -3931 NM_001366028 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein axonemal heavy chain 12 protein-coding 150.833-33 chr4 96037160 96037538 + 0.833333 NA Intergenic MIR|SINE|MIR 197256 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 212.667-38 chr5 163069002 163069451 + 0.833333 NA Intergenic L1MA1|LINE|L1 -368345 NM_001364023 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 254.667-32 chr8 115609352 115609749 + 0.833333 NA intron (NM_001282902, intron 2 of 5) intron (NM_001282902, intron 2 of 5) 58463 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 202-30 chr4 89286078 89286508 + 0.833333 NA intron (NM_198281, intron 1 of 1) intron (NM_198281, intron 1 of 1) 21507 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 203.5-45 chr9 73996977 73997440 + 0.833333 NA Intergenic Intergenic -374323 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 168-46 chr4 56125075 56125417 + 0.833333 NA Intergenic L1MC4|LINE|L1 -44949 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 208-3 chr10 33447386 33447747 + 0.833333 NA Intergenic Intergenic -112661 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 360-6 chr9 1657926 1658432 + 0.833333 NA Intergenic Intergenic -357168 NM_001289397 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 325.167 chr13 48916218 48916675 + 0.833333 NA Intergenic MIR|SINE|MIR -59466 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 277.667-8 chr3 102329621 102330179 + 0.833333 NA Intergenic L1ME1|LINE|L1 -105115 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 190.5-55 chr9 27794236 27794625 + 0.833333 NA Intergenic L1P3|LINE|L1 -220564 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 138-53 chr2 66055120 66055530 + 0.833333 NA Intergenic L1MEd|LINE|L1 303003 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 146.5-10 chr10 52303834 52304152 + 0.833333 NA intron (NR_038277, intron 3 of 5) AluJr|SINE|Alu 10135 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 223.5-8 chr14 68194433 68195143 + 0.833333 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 371196 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 156.5-15 chr10 65023171 65023380 + 0.833333 NA Intergenic MSTD|LTR|ERVL-MaLR -98757 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 115.5-44 chr16 26654635 26654935 + 0.833333 NA Intergenic L1MD2|LINE|L1 -412142 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 194.833-24 chr5 114308541 114308908 + 0.833333 NA Intergenic LTR16E2|LTR|ERVL -53346 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 123.667-102 chr7 84964045 84964278 + 0.833333 NA Intergenic L2a|LINE|L2 157770 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 146.5-83 chr7 107643414 107643744 + 0.833333 NA Intergenic MIR|SINE|MIR -17249 NM_000441 5172 Hs.571246 NM_000441 ENSG00000091137 SLC26A4 DFNB4|EVA|PDS|TDH2B solute carrier family 26 member 4 protein-coding 241.5-9 chr12 5601961 5602686 + 0.833333 NA intron (NM_001278596, intron 20 of 25) AluSx|SINE|Alu 108191 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 121.5-44 chr16 848383 848619 + 0.833333 NA Intergenic Intergenic 43058 NM_001013638 388199 Hs.528461 NM_001013638 PRR25 gs64 proline rich 25 protein-coding 336.167-7 chr7 81469126 81470076 + 0.833333 NA Intergenic MER34B|LTR|ERV1 92218 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 128.333-87 chr4 36247755 36248054 + 0.833333 NA intron (NR_122079, intron 2 of 4) intron (NR_122079, intron 2 of 4) -3390 NM_015230 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 295.667-7 chr4 33190379 33190913 + 0.833333 NA Intergenic Intergenic 839608 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 267.167-17 chr5 31341614 31342225 + 0.833333 NA Intergenic Intergenic 148233 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 274.5-15 chr4 184657263 184657833 + 0.833333 NA intron (NR_144313, intron 3 of 12) intron (NR_144313, intron 3 of 12) 7810 NM_001345891 201973 Hs.481307 NM_152683 ENSG00000164306 PRIMPOL CCDC111|MYP22|Primpol1 primase and DNA directed polymerase protein-coding 260.167-3 chr1 174108990 174109504 + 0.833333 NA Intergenic HAL1|LINE|L1 50040 NR_121197 102724601 Hs.563791 NR_121197 ENSG00000227373 RABGAP1L-DT - RABGAP1L divergent transcript ncRNA 159.833-24 chr17 47749695 47750028 + 0.833333 NA Intergenic L1ME3F|LINE|L1 16625 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 207.833-8 chr12 19147169 19147539 + 0.833333 NA intron (NM_019012, intron 3 of 25) intron (NM_019012, intron 3 of 25) 17621 NM_001256470 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 143.5-46 chr20 58893573 58893792 + 0.833333 NA intron (NR_132272, intron 1 of 3) intron (NR_132272, intron 1 of 3) 1519 NR_132272 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 141.167-61 chr5 120721641 120721952 + 0.833333 NA Intergenic L2a|LINE|L2 190332 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 249.5-16 chr20 16626908 16627272 + 0.833333 NA Intergenic MER72|LTR|ERV1 -53642 NM_024704 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 132.333-82 chr5 9120012 9120224 + 0.833333 NA intron (NM_003966, intron 14 of 22) intron (NM_003966, intron 14 of 22) -66223 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 133.667-30 chr14 75851201 75851426 + 0.833333 NA intron (NM_015072, intron 28 of 31) intron (NM_015072, intron 28 of 31) 130682 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 157.833-8 chr10 68024037 68024290 + 0.833333 NA intron (NM_001278185, intron 8 of 23) L1ME3B|LINE|L1 -13280 NR_131184 100009667 NR_131184 POU5F1P5 Oct4-pg5 POU class 5 homeobox 1 pseudogene 5 pseudo 147.333-71 chr6 33663455 33663692 + 0.833333 NA intron (NM_002224, intron 10 of 57) intron (NM_002224, intron 10 of 57) -29828 NR_134628 101929188 Hs.658327 NR_134628 LOC101929188 - uncharacterized LOC101929188 ncRNA 175.167-18 chr13 29830917 29831235 + 0.833333 NA intron (NM_007106, intron 1 of 4) intron (NM_007106, intron 1 of 4) 19541 NM_007106 5412 Hs.145575 NM_007106 ENSG00000122042 UBL3 HCG-1|PNSC1 ubiquitin like 3 protein-coding 116.667-99 chr7 9450724 9451068 + 0.833333 NA Intergenic Intergenic -183374 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 154.333-2 chr1 188243012 188243361 + 0.833333 NA Intergenic Intergenic 799558 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 156.333-73 chr5 21143783 21144136 + 0.833333 NA Intergenic Intergenic -315521 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 208.833-10 chr13 44145221 44145524 + 0.833333 NA intron (NM_024058, intron 2 of 2) intron (NM_024058, intron 2 of 2) 2363 NR_132368 105370183 Hs.652552 NR_132368 LINC00390 - long intergenic non-protein coding RNA 390 ncRNA 136.5-16 chr10 89602505 89602771 + 0.833333 NA intron (NM_148977, intron 2 of 6) intron (NM_148977, intron 2 of 6) -9811 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 178.667-35 chr21 20906614 20907029 + 0.833333 NA Intergenic Intergenic -91588 NM_001352595 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 152.167-11 chr11 5519958 5520219 + 0.833333 NA intron (NR_133006, intron 2 of 2) intron (NR_133006, intron 2 of 2) 1697 NR_133006 101927763 NR_133006 OLFM5P - olfactomedin family member 5, pseudogene pseudo 140.5-28 chr16 20883696 20884031 + 0.833333 NA intron (NM_173475, intron 1 of 2) intron (NM_173475, intron 1 of 2) -16019 NM_001369632 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 264-5 chr16 52831424 52831917 + 0.833333 NA Intergenic Intergenic 221203 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 247.5-17 chr2 101605158 101605588 + 0.833333 NA Intergenic L1MA6|LINE|L1 -92330 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 137.5-5 chr1 70306032 70306276 + 0.833333 NA intron (NM_030816, intron 6 of 12) intron (NM_030816, intron 6 of 12) 48568 NM_030816 81573 Hs.744989 NM_030816 ENSG00000118454 ANKRD13C dJ677H15.3 ankyrin repeat domain 13C protein-coding 213.667-19 chr2 172212928 172213229 + 0.833333 NA Intergenic Intergenic 110072 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 139-28 chr2 81979336 81979614 + 0.833333 NA Intergenic Intergenic -512529 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 284 chr14 36340081 36340498 + 0.833333 NA Intergenic Intergenic -19613 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 139-80 chr8 139276442 139276729 + 0.833333 NA Intergenic Intergenic -362544 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 237.333-27 chr3 183245660 183246025 + 0.833333 NA intron (NM_015078, intron 15 of 29) intron (NM_015078, intron 15 of 29) -7411 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 147-90 chr9 78174288 78174534 + 0.833333 NA Intergenic L1MEd|LINE|L1 -61664 NM_001349839 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 190.5-36 chr2 233818703 233818947 + 0.833333 NA intron (NM_001367507, intron 29 of 41) intron (NM_001367507, intron 29 of 41) 35710 NM_018410 55355 Hs.532968 NM_018410 ENSG00000123485 HJURP FAKTS|URLC9|hFLEG1 Holliday junction recognition protein protein-coding 266-10 chr16 79170080 79170553 + 0.833333 NA intron (NM_001291997, intron 7 of 7) MIRb|SINE|MIR 430421 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 264-20 chr7 117341199 117341977 + 0.833333 NA Intergenic Intergenic -18530 NR_024047 7472 Hs.567356 NM_003391 ENSG00000105989 WNT2 INT1L1|IRP Wnt family member 2 protein-coding 227.667-5 chr11 7982516 7982892 + 0.833333 NA Intergenic MER63B|DNA|hAT-Blackjack -4633 NM_003754 8665 Hs.516023 NM_003754 ENSG00000175390 EIF3F EIF3S5|MRT67|eIF3-p47 eukaryotic translation initiation factor 3 subunit F protein-coding 183.167-38 chr4 67100894 67101146 + 0.833333 NA Intergenic Intergenic 320980 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 194.667-2 chr1 44085132 44085595 + 0.833333 NA Intergenic L2a|LINE|L2 -33458 NM_173484 128209 Hs.567674 NM_173484 ENSG00000171872 KLF17 ZNF393|Zfp393 Kruppel like factor 17 protein-coding 155.667-36 chr2 28412135 28412489 + 0.833333 NA exon (NM_005253, exon 4 of 4) exon (NM_005253, exon 4 of 4) -17640 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 193.833-28 chr5 128601788 128602113 + 0.833333 NA Intergenic L1MA3|LINE|L1 -63705 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 221.333-22 chr6 9914535 9915047 + 0.833333 NA Intergenic AluJr|SINE|Alu -489711 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 234.833-5 chr14 23273474 23273909 + 0.833333 NA TTS (NM_001282322) TTS (NM_001282322) 12441 NM_020834 57594 Hs.632332 NM_020834 ENSG00000215271 HOMEZ KIAA1443 homeobox and leucine zipper encoding protein-coding 161.333-16 chr12 75454028 75454393 + 0.833333 NA Intergenic Intergenic -26545 NM_006851 11010 Hs.205558 NM_006851 ENSG00000139278 GLIPR1 CRISP7|GLIPR|RTVP1 GLI pathogenesis related 1 protein-coding 203.167-24 chr2 55770994 55771611 + 0.833333 NA Intergenic Intergenic -77458 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 142.667-94 chr7 72345894 72346355 + 0.833333 NA intron (NM_001363460, intron 1 of 5) intron (NM_001363460, intron 1 of 5) -8733 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 150.333-8 chr10 20877892 20878199 + 0.833333 NA intron (NM_006393, intron 5 of 27) intron (NM_006393, intron 5 of 27) 19557 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 158.5-55 chr3 118035218 118035470 + 0.833333 NA Intergenic Intergenic -344419 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 157.167-45 chr4 44318761 44319195 + 0.833333 NA intron (NM_198353, intron 1 of 1) L2b|LINE|L2 129831 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 160.5-17 chr15 86240352 86240681 + 0.833333 NA intron (NM_152336, intron 6 of 24) MER110A|LTR|ERV1 76452 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 166.167-36 chr4 64679842 64680092 + 0.833333 NA Intergenic Intergenic -270507 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 174-10 chr11 74199909 74200272 + 0.833333 NA intron (NM_001271593, intron 1 of 13) intron (NM_001271593, intron 1 of 13) 28801 NM_001271593 51400 Hs.503251 NM_016147 ENSG00000214517 PPME1 ABDH19|PME-1 protein phosphatase methylesterase 1 protein-coding 153.167-23 chr18 13439433 13439695 + 0.833333 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -12030 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 115.5-63 chr3 57817074 57817299 + 0.833333 NA intron (NM_001304420, intron 1 of 21) intron (NM_001304420, intron 1 of 21) 59930 NM_001304421 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 164.5-48 chr5 147566187 147566698 + 0.833333 NA intron (NR_038902, intron 1 of 3) AluSq2|SINE|Alu 6448 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 216.5-20 chr20 52902807 52903265 + 0.833333 NA Intergenic AluSx|SINE|Alu -69322 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 183.333-34 chr2 237481397 237481716 + 0.833333 NA Intergenic Intergenic -4854 NM_001281474 79083 Hs.102406 NM_024101 ENSG00000115648 MLPH SLAC2-A melanophilin protein-coding 174.833-25 chr20 17663578 17664050 + 0.833333 NA intron (NM_004587, intron 1 of 24) intron (NM_004587, intron 1 of 24) 18428 NM_001365613 6238 Hs.472213 NM_004587 ENSG00000125844 RRBP1 ES/130|ES130|RRp|hES ribosome binding protein 1 protein-coding 157.5-44 chr3 132475568 132475801 + 0.833333 NA intron (NM_001329126, intron 23 of 56) intron (NM_001329126, intron 23 of 56) 58182 NM_001329126 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 209.5-34 chr5 108263490 108263854 + 0.833333 NA intron (NM_001163315, intron 4 of 8) Charlie4|DNA|hAT-Charlie 118426 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 346-4 chr5 3158715 3159433 + 0.833333 NA Intergenic Charlie17b|DNA|hAT-Charlie -18761 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 211.833-25 chr6 75967616 75968028 + 0.833333 NA intron (NM_001563, intron 12 of 16) HAL1b|LINE|L1 104840 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 202.5-24 chr6 108610130 108610487 + 0.833333 NA intron (NM_201559, intron 2 of 3) intron (NM_201559, intron 2 of 3) 49391 NM_001455 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 161.167-42 chr5 24649854 24650151 + 0.833333 NA Intergenic HERVK3-int|LTR|ERVK -5024 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 113.833-14 chr12 43430862 43431028 + 0.833333 NA intron (NM_025003, intron 22 of 38) intron (NM_025003, intron 22 of 38) 121258 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 116-84 chr6 167346647 167346815 + 0.833333 NA Intergenic L1MA7|LINE|L1 21645 NM_031949 83887 Hs.520554 NM_031949 ENSG00000120440 TTLL2 C6orf104|NYD-TSPG|dJ366N23.3 tubulin tyrosine ligase like 2 protein-coding 115.667-4 chr1 80282510 80282648 + 0.833333 NA Intergenic Intergenic -253176 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 180.333-35 chr2 226578788 226579159 + 0.833333 NA Intergenic Intergenic 79820 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 279.5 chr16 46388479 46389273 + 0.833333 NA Intergenic Intergenic 180221 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 133.167-10 chr10 54033253 54033562 + 0.833333 NA intron (NM_001354411, intron 19 of 34) MER106A|DNA|hAT-Charlie -452823 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 146.833-53 chr6 56415191 56415510 + 0.833333 NA Intergenic HAL1|LINE|L1 -21222 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 125.667-99 chr5 119229775 119229951 + 0.833333 NA intron (NM_001290321, intron 38 of 43) MER31-int|LTR|ERV1 -38896 NM_001286815 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 138.167-23 chr15 37333315 37333650 + 0.833333 NA Intergenic Intergenic -232171 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 141.167-46 chr20 14827896 14828213 + 0.833333 NA intron (NM_001351663, intron 5 of 17) L1ME4a|LINE|L1 101464 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 201-18 chr16 64850742 64851129 + 0.833333 NA Intergenic L1MA5|LINE|L1 271128 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 125-61 chr4 65416978 65417423 + 0.833333 NA intron (NM_001281767, intron 6 of 16) intron (NM_001281767, intron 6 of 16) 252288 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 300.5-15 chr8 106664308 106664745 + 0.833333 NA intron (NM_181354, intron 1 of 13) MamRep1151|LTR?|LTR? 6718 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 177.833-47 chr8 81040716 81041166 + 0.833333 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 71127 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 116-15 chr12 12483299 12483530 + 0.833333 NA intron (NM_030640, intron 5 of 6).2 MIR|SINE|MIR 79449 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 253.833-18 chr8 127076414 127076765 + 0.833333 NA intron (NR_119373, intron 3 of 3) MLT1A|LTR|ERVL-MaLR -3285 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 159.667-30 chr12 119984118 119984319 + 0.833333 NA Intergenic Charlie1a|DNA|hAT-Charlie -5018 NM_001367886 92558 Hs.369763 NM_207311 ENSG00000135127 BICDL1 BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1 BICD family like cargo adaptor 1 protein-coding 156.5-3 chr1 57293114 57293712 + 0.833333 NA intron (NM_001353980, intron 4 of 5) MIR|SINE|MIR 129699 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 242.333-22 chr8 75293737 75294137 + 0.833333 NA Intergenic Intergenic -15048 NR_103849 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 175.333-69 chr9 129971076 129971345 + 0.833333 NA intron (NM_001363755, intron 4 of 15) intron (NM_001363755, intron 4 of 15) 71979 NM_015033 23048 Hs.189409 NM_015033 ENSG00000187239 FNBP1 FBP17 formin binding protein 1 protein-coding 132-99 chr9 86548860 86549046 + 0.833333 NA Intergenic MER47A|DNA|TcMar-Tigger -194543 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 116.5-46 chr22 31460071 31460242 + 0.833333 NA intron (NM_001164502, intron 4 of 16) intron (NM_001164502, intron 4 of 16) 29400 NM_001164501 56478 Hs.517559 NM_019843 ENSG00000184708 EIF4ENIF1 4E-T|Clast4 eukaryotic translation initiation factor 4E nuclear import factor 1 protein-coding 169.333-28 chr17 59196926 59197201 + 0.833333 NA intron (NM_018304, intron 7 of 9) AluSg7|SINE|Alu -12947 NM_018149 55181 Hs.7296 NM_018149 ENSG00000167447 SMG8 C17orf71 SMG8 nonsense mediated mRNA decay factor protein-coding 225.5-25 chr19 49219809 49220126 + 0.833333 NA Intergenic L1M5|LINE|L1 62175 NM_001195227 54795 Hs.467101 NM_017636 ENSG00000130529 TRPM4 LTrpC4|PFHB1B|TRPM4B|hTRPM4 transient receptor potential cation channel subfamily M member 4 protein-coding 183.833-40 chr7 99938569 99938879 + 0.833333 NA Intergenic HERV16-int|LTR|ERVL -9104 NM_181538 349149 Hs.647524 NM_181538 ENSG00000176402 GJC3 CX29|CX30.2|CX31.3|GJE1 gap junction protein gamma 3 protein-coding 123.5-86 chr8 127096656 127096844 + 0.833333 NA Intergenic MIRc|SINE|MIR -14529 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 235.167-23 chr5 32152875 32153242 + 0.833333 NA intron (NM_022130, intron 1 of 3) L1MC5|LINE|L1 21261 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 129.333-103 chr8 120203200 120203476 + 0.833333 NA intron (NM_021110, intron 8 of 47) intron (NM_021110, intron 8 of 47) 78236 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 123.167-87 chr6 151462500 151462784 + 0.833333 NA intron (NM_024573, intron 3 of 4) L1ME3A|LINE|L1 10176 NM_024573 79624 Hs.15929 NM_024573 ENSG00000146476 ARMT1 C6orf211 acidic residue methyltransferase 1 protein-coding 194.833-14 chr21 15428684 15428959 + 0.833333 NA Intergenic MIRb|SINE|MIR -301113 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 182.167-18 chr18 70304792 70305042 + 0.833333 NA intron (NM_004232, intron 1 of 1) L1M4|LINE|L1 15872 NM_004232 9306 Hs.44439 NM_004232 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 181-60 chr7 99554994 99555589 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR -3131 NM_024061 79027 Hs.599798 NM_024061 ENSG00000197343 ZNF655 VIK|VIK-1 zinc finger protein 655 protein-coding 131.5-27 chr14 70987965 70988154 + 0.833333 NA intron (NM_001308160, intron 6 of 33) intron (NM_001308160, intron 6 of 33) 80600 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 228.5 chr1 77331434 77331788 + 0.833333 NA intron (NM_012093, intron 5 of 13) L1MEg|LINE|L1 48524 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 157.167-50 chr5 76630377 76630633 + 0.833333 NA intron (NM_006633, intron 14 of 35) Tigger15a|DNA|TcMar-Tigger -7102 NM_004101 2151 Hs.42502 NM_004101 ENSG00000164220 F2RL2 PAR-3|PAR3 coagulation factor II thrombin receptor like 2 protein-coding 353.167-2 chr12 66743247 66743925 + 0.833333 NA intron (NM_001366724, intron 1 of 23) intron (NM_001366724, intron 1 of 23) 60683 NM_001366723 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 194.667-7 chr10 13908932 13909275 + 0.833333 NA intron (NM_018027, intron 2 of 24) L2a|LINE|L2 62793 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 220.167-13 chr16 53596927 53597224 + 0.833333 NA Intergenic L1M5|LINE|L1 -93771 NM_001308325 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 198.5-26 chr3 79391481 79391885 + 0.833333 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -20044 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 127.833-24 chr14 83037510 83037816 + 0.833333 NA Intergenic THE1A-int|LTR|ERVL-MaLR 395031 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 139.167-10 chr11 33032922 33033155 + 0.833333 NA intron (NM_001077242, intron 8 of 8) intron (NM_001077242, intron 8 of 8) -6534 NM_018393 55346 Hs.655341 NM_018393 ENSG00000176148 TCP11L1 dJ85M6.3 t-complex 11 like 1 protein-coding 138.167-64 chr5 121020794 121021041 + 0.833333 NA Intergenic Intergenic -301633 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 213.833-4 chr10 36455806 36456206 + 0.833333 NA Intergenic Intergenic -669851 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 224.333-21 chr21 18191816 18192459 + 0.833333 NA intron (NM_001204178, intron 2 of 5) Charlie6|DNA|hAT-Charlie -52696 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 238-26 chr6 97896384 97896903 + 0.833333 NA Intergenic Intergenic -127888 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 130.833-18 chr14 70680482 70680817 + 0.833333 NA Intergenic L1MB7|LINE|L1 -18049 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 146.833-61 chr7 143100238 143100670 + 0.833333 NA intron (NM_001130026, intron 9 of 10) Tigger9b|DNA|TcMar-Tigger -31623 NM_002652 5304 Hs.99949 NM_002652 ENSG00000159763 PIP GCDFP-15|GCDFP15|GPIP4 prolactin induced protein protein-coding 200.167-22 chr2 13794356 13794826 + 0.833333 NA Intergenic Intergenic 606367 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 188-69 chr9 11619212 11619535 + 0.833333 NA Intergenic FLAM_C|SINE|Alu 1006167 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 135.5-84 chr8 137575726 137575944 + 0.833333 NA Intergenic Intergenic -162247 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 304.167-3 chr14 66075085 66075705 + 0.833333 NA Intergenic Intergenic -410976 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 183.667-45 chr21 30216645 30216940 + 0.833333 NA promoter-TSS (NM_199328) promoter-TSS (NM_199328) -695 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 159.167-40 chr3 103965097 103965317 + 0.833333 NA Intergenic L1PB4|LINE|L1 -441091 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 196.167-19 chr2 59569222 59569485 + 0.833333 NA Intergenic L2c|LINE|L2 351645 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 180.667-46 chr22 28255391 28255812 + 0.833333 NA intron (NM_001145418, intron 5 of 22) AluSp|SINE|Alu -204268 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 222.333-18 chr2 153368671 153369094 + 0.833333 NA Intergenic L1MEf|LINE|L1 109880 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 413-3 chr8 75921914 75922817 + 0.833333 NA Intergenic L1ME1|LINE|L1 382397 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 157.833-60 chr6 155017535 155017913 + 0.833333 NA Intergenic AluSc8|SINE|Alu -72565 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 133.333-7 chr1 225506174 225506361 + 0.833333 NA intron (NM_001008493, intron 11 of 14) AluSz|SINE|Alu -77412 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 156.333-60 chr3 22408564 22408823 + 0.833333 NA Intergenic L1MA9|LINE|L1 451554 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 181.667-29 chr2 125905096 125905370 + 0.833333 NA Intergenic Intergenic 212752 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 153.667-57 chr4 93058063 93058326 + 0.833333 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 753795 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 233.333-2 chr10 22556521 22556978 + 0.833333 NA intron (NM_005028, intron 6 of 9) intron (NM_005028, intron 6 of 9) -118820 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 199.833-21 chr4 175897873 175898243 + 0.833333 NA intron (NR_048571, intron 1 of 5) intron (NR_048571, intron 1 of 5) -84944 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 178-59 chr7 99997381 99997626 + 0.833333 NA promoter-TSS (NR_159959) promoter-TSS (NR_159959) -187 NR_159959 105375423 NR_159959 LOC105375423 - uncharacterized LOC105375423 ncRNA 218.167-5 chr10 125508032 125508401 + 0.833333 NA Intergenic Intergenic -66155 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 143-2 chr1 96020367 96020923 + 0.833333 NA intron (NR_125991, intron 4 of 4) intron (NR_125991, intron 4 of 4) 28577 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 157.167-62 chr8 86516111 86516400 + 0.833333 NA intron (NM_003909, intron 2 of 16) intron (NM_003909, intron 2 of 16) 1820 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 163.5-18 chr12 93662816 93663214 + 0.833333 NA Intergenic Intergenic -14356 NR_135147 8738 Hs.38533 NM_003805 ENSG00000169372 CRADD MRT34|RAIDD CASP2 and RIPK1 domain containing adaptor with death domain protein-coding 200-57 chr5 148757096 148757467 + 0.833333 NA Intergenic L1MA10|LINE|L1 -69312 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 182.5-45 chr8 135505720 135506116 + 0.833333 NA intron (NM_006558, intron 1 of 8) LTR50|LTR|ERVL 48462 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 114.833-39 chr20 19010833 19011107 + 0.833333 NA Intergenic Intergenic -180767 NR_161342 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 140.833-28 chr2 60725576 60725928 + 0.833333 NA Intergenic L1MD|LINE|L1 -30516 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 141-80 chr7 39314507 39314811 + 0.833333 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 14475 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 171.5-15 chr12 116874284 116874510 + 0.833333 NA intron (NR_073189, intron 3 of 4) L2a|LINE|L2 7044 NR_073189 8739 Hs.26605 NM_003806 ENSG00000135116 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 137.5-59 chr3 82012391 82012603 + 0.833333 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 26355 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 220.833-14 chr3 185932462 185932951 + 0.833333 NA intron (NM_004593, intron 1 of 8) intron (NM_004593, intron 1 of 8) 5308 NM_004593 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog protein-coding 139.167-46 chr2 231299555 231299891 + 0.833333 NA intron (NM_001352759, intron 19 of 19) L2|LINE|L2 -62985 NR_039937 100616317 NR_039937 ENSG00000263641 MIR4777 - microRNA 4777 ncRNA 157.667-35 chr2 72881536 72881998 + 0.833333 NA Intergenic L2a|LINE|L2 -5641 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase protein-coding 249.833-5 chr11 121999953 122000453 + 0.833333 NA Intergenic L1PB1|LINE|L1 99641 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 171.667-70 chr6 55098063 55098403 + 0.833333 NA Intergenic Intergenic -8227 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 204.333-48 chr6 71865936 71866424 + 0.833333 NA Intergenic L1MC3|LINE|L1 -20523 NM_014989 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 243.333-18 chr5 74000401 74000708 + 0.833333 NA Intergenic L1ME4a|LINE|L1 187008 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 168.167-42 chr4 52197942 52198300 + 0.833333 NA Intergenic Intergenic 146817 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 202.667-31 chr3 145135212 145135531 + 0.833333 NA Intergenic Intergenic 933814 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 204.5-4 chr10 61315425 61315879 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -136987 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 151.333-45 chr2 73446837 73447200 + 0.833333 NA intron (NM_015120, intron 7 of 22) L2a|LINE|L2 -10085 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 118.833-29 chr17 7471792 7472089 + 0.833333 NA intron (NM_020899, intron 1 of 3) intron (NM_020899, intron 1 of 3) 7691 NM_001128833 57659 Hs.35096 NM_020899 ENSG00000174282 ZBTB4 KAISO-L1|ZNF903 zinc finger and BTB domain containing 4 protein-coding 122.667-70 chr3 144219408 144219727 + 0.833333 NA Intergenic L1M5|LINE|L1 246486 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 187.833-17 chr15 62739657 62740037 + 0.833333 NA intron (NM_015059, intron 28 of 55) intron (NM_015059, intron 28 of 55) -84110 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 153.167-40 chr4 171748336 171748828 + 0.833333 NA Intergenic Intergenic -64822 NM_001034845 442117 Hs.386236 NM_001034845 ENSG00000174473 GALNTL6 GALNACT20|GALNT17|GalNAc-T6L polypeptide N-acetylgalactosaminyltransferase like 6 protein-coding 225.667-4 chr11 39362379 39362704 + 0.833333 NA Intergenic L1MC1|LINE|L1 713683 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 147.833-52 chr4 118776439 118776802 + 0.833333 NA intron (NM_014822, intron 8 of 22) intron (NM_014822, intron 8 of 22) 59506 NM_014822 9871 Hs.189641 NM_014822 ENSG00000150961 SEC24D CLCRP2 SEC24 homolog D, COPII coat complex component protein-coding 249.667-26 chr3 29006646 29006993 + 0.833333 NA Intergenic L1PA16|LINE|L1 274120 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 124.833-43 chr2 112924237 112924435 + 0.833333 NA Intergenic Intergenic 9143 NM_173205 27178 Hs.166371 NM_014439 ENSG00000125571 IL37 FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 interleukin 37 protein-coding 185.667-11 chr12 110754872 110755225 + 0.833333 NA Intergenic Intergenic -12157 NM_002710 5501 Hs.79081 NM_002710 ENSG00000186298 PPP1CC PP-1G|PP1C|PPP1G protein phosphatase 1 catalytic subunit gamma protein-coding 143.667-74 chr3 137232066 137232673 + 0.833333 NA Intergenic Intergenic 274386 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 134-99 chr7 125487510 125487740 + 0.833333 NA Intergenic L1PA13|LINE|L1 -223334 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 126-98 chr8 138606706 138607121 + 0.833333 NA intron (NM_152888, intron 57 of 64) intron (NM_152888, intron 57 of 64) -109183 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 206.667-26 chr2 180463165 180463496 + 0.833333 NA Intergenic Charlie6|DNA|hAT-Charlie -228774 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 177.667-35 chr2 55302791 55303280 + 0.833333 NA intron (NM_018084, intron 25 of 31) intron (NM_018084, intron 25 of 31) 20716 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 143.167-59 chr4 105095914 105096228 + 0.833333 NA Intergenic L1M4|LINE|L1 -49804 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 119.5-85 chr5 145325170 145325461 + 0.833333 NA Intergenic Intergenic 510027 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 141.5-83 chr8 116281893 116282194 + 0.833333 NA intron (NR_046215, intron 1 of 13) intron (NR_046215, intron 1 of 13) 43016 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 217.5-7 chr12 125674464 125674922 + 0.833333 NA Intergenic Intergenic 52241 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 186.333-10 chr10 72643565 72643802 + 0.833333 NA Intergenic Intergenic -17492 NM_001363513 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 122.5-59 chr3 29260614 29260883 + 0.833333 NA Intergenic Intergenic 20191 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 154.167-31 chr2 73252939 73253231 + 0.833333 NA TTS (NM_006429) TTS (NM_006429) 18777 NM_006429 10574 Hs.368149 NM_006429 ENSG00000135624 CCT7 CCTETA|CCTH|NIP7-1|TCP1ETA chaperonin containing TCP1 subunit 7 protein-coding 119.5-37 chr16 49469886 49470111 + 0.833333 NA Intergenic Intergenic 48587 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 168-58 chr5 122348474 122348771 + 0.833333 NA intron (NM_001308107, intron 1 of 8) Tigger18a|DNA|TcMar-Tigger 36385 NM_005460 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 163.833-46 chr5 22636026 22636382 + 0.833333 NA intron (NM_004061, intron 1 of 14) L1MB8|LINE|L1 217140 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 146.667-93 chr8 87913863 87914076 + 0.833333 NA Intergenic Intergenic -39954 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 313-6 chr6 165721435 165722101 + 0.833333 NA Intergenic Intergenic -59488 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 317-3 chr1 240344918 240345371 + 0.833333 NA intron (NM_001348094, intron 11 of 14) intron (NM_001348094, intron 11 of 14) 253261 NM_001348094 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 168.333-13 chr12 57565956 57566367 + 0.833333 NA intron (NM_004984, intron 6 of 28) AluSx1|SINE|Alu 16117 NM_004984 3798 Hs.151219 NM_004984 ENSG00000155980 KIF5A ALS25|D12S1889|MY050|NEIMY|NKHC|SPG10 kinesin family member 5A protein-coding 273-7 chr2 211789088 211789584 + 0.833333 NA intron (NM_001042599, intron 3 of 26) MLT1J|LTR|ERVL-MaLR 637024 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 132.5-17 chr12 39558567 39558746 + 0.833333 NA intron (NM_005164, intron 9 of 9) THE1D|LTR|ERVL-MaLR 61147 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 352.167 chr20 44360829 44361846 + 0.833333 NA intron (NM_175914, intron 1 of 9) intron (NM_175914, intron 1 of 9) 5536 NM_175914 3172 Hs.116462 NM_000457 ENSG00000101076 HNF4A FRTS4|HNF4|HNF4a7|HNF4a8|HNF4a9|HNF4alpha|MODY|MODY1|NR2A1|NR2A21|TCF|TCF14 hepatocyte nuclear factor 4 alpha protein-coding 120-92 chr5 104816705 104817014 + 0.833333 NA Intergenic Intergenic -282615 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 120.333-35 chr12 77117618 77117836 + 0.833333 NA Intergenic Intergenic -52158 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 171-45 chr5 99442003 99442236 + 0.833333 NA Intergenic MIRb|SINE|MIR -91871 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 209.333-19 chr2 171549778 171550103 + 0.833333 NA intron (NM_001256909, intron 2 of 3) intron (NM_001256909, intron 2 of 3) 27466 NM_001127383 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 196.5-36 chr7 89150434 89150898 + 0.833333 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -354929 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 254.833-12 chrX 113565245 113565867 + 0.833333 NA Intergenic L2a|LINE|L2 372662 NR_131204 105463123 Hs.550218 NR_131204 XACT - X active specific transcript ncRNA 202.667-46 chr8 82935923 82936260 + 0.833333 NA intron (NR_134295, intron 2 of 3) intron (NR_134295, intron 2 of 3) 23987 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 208.167-9 chr18 34942771 34943200 + 0.833333 NA Intergenic Intergenic -33943 NM_001143826 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 322.167-7 chr4 39422924 39423517 + 0.833333 NA intron (NM_175737, intron 1 of 4) intron (NM_175737, intron 1 of 4) 11310 NR_049857 100847065 NR_049857 ENSG00000264621 MIR5591 - microRNA 5591 ncRNA 286.667-5 chr17 65547645 65548124 + 0.833333 NA intron (NM_001363813, intron 3 of 9) intron (NM_001363813, intron 3 of 9) 13764 NM_004655 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 252-11 chr4 87977332 87977832 + 0.833333 NA intron (NM_001251829, intron 3 of 4) intron (NM_001251829, intron 3 of 4) 1868 NM_001040058 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 140-13 chr11 31139368 31139676 + 0.833333 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) -146836 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 295.333-14 chr5 43750354 43750926 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -147410 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 245.5-9 chr2 146307179 146307513 + 0.833333 NA Intergenic Intergenic -279711 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 166.5-43 chr4 57146248 57146481 + 0.833333 NA intron (NR_034081, intron 1 of 4) intron (NR_034081, intron 1 of 4) -35979 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 148.5-4 chr1 157386586 157386959 + 0.833333 NA Intergenic L1PA10|LINE|L1 165743 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 205.333-9 chr11 113856879 113857262 + 0.833333 NA intron (NM_020886, intron 1 of 24) Kanga1c|DNA|TcMar-Tc2 18502 NM_001346271 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 297.666-2 chr3 23424098 23424720 + 0.833333 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 221082 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 182.833-54 chr7 93473008 93473350 + 0.833333 NA intron (NM_001164738, intron 4 of 12) intron (NM_001164738, intron 4 of 12) 9676 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 180.833-42 chr8 68811104 68811428 + 0.833333 NA intron (NR_146187, intron 12 of 13) MER52A|LTR|ERV1 292924 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 124.5-9 chr10 97729109 97729313 + 0.833333 NA Intergenic L1MB3|LINE|L1 -7910 NM_001174119 118813 Hs.744075 NM_144588 ENSG00000155256 ZFYVE27 PROTRUDIN|SPG33 zinc finger FYVE-type containing 27 protein-coding 226.167-17 chr3 39441606 39441961 + 0.833333 NA Intergenic Intergenic -25897 NR_103506 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 180.167-27 chr2 197737193 197737496 + 0.833333 NA intron (NM_033030, intron 10 of 10) L1M6|LINE|L1 31975 NM_138395 92935 Hs.744330 NM_138395 ENSG00000247626 MARS2 COXPD25|MetRS|mtMetRS methionyl-tRNA synthetase 2, mitochondrial protein-coding 192.333-61 chrX 84454484 84454823 + 0.833333 NA intron (NM_001177478, intron 3 of 9) L1MA3|LINE|L1 47800 NM_144657 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 164.167-28 chr19 44181228 44181493 + 0.833333 NA Intergenic AluJr|SINE|Alu 16196 NM_001032372 7769 Hs.145956 NM_015919 ENSG00000167380 ZNF226 - zinc finger protein 226 protein-coding 165.167-25 chr2 128673665 128674010 + 0.833333 NA Intergenic L1MD2|LINE|L1 -190763 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 175.167-15 chr11 122301772 122302088 + 0.833333 NA intron (NR_137179, intron 1 of 4) intron (NR_137179, intron 1 of 4) 7557 NR_137180 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 126.167-78 chr6 82043171 82043347 + 0.833333 NA intron (NR_149135, intron 3 of 3) intron (NR_149135, intron 3 of 3) 58506 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 189.167 chr1 26795767 26796060 + 0.833333 NA intron (NM_001202554, intron 3 of 3) AluSx1|SINE|Alu 7725 NM_001202554 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 198.167-12 chr17 55095785 55096134 + 0.833333 NA intron (NM_178509, intron 16 of 17) Kanga1|DNA|TcMar-Tc2 -127174 NM_001162862 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 227.167-22 chr3 40616042 40616509 + 0.833333 NA Intergenic Intergenic 91315 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 123.667-59 chr20 19246033 19246216 + 0.833333 NA intron (NR_024564, intron 6 of 7) L1MEd|LINE|L1 33482 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 155-5 chr1 96671881 96672072 + 0.833333 NA Intergenic MLT2A1|LTR|ERVL -49629 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 115.833-81 chr8 123348939 123349182 + 0.833333 NA promoter-TSS (NR_030382) promoter-TSS (NR_030382) -930 NR_030382 693130 NR_030382 ENSG00000283172 MIR548D1 MIRN548D1 microRNA 548d-1 ncRNA 162.667-66 chr5 122626018 122626313 + 0.833333 NA Intergenic Intergenic -41565 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 119.667-17 chr12 64242374 64242659 + 0.833333 NA Intergenic L2c|LINE|L2 -20220 NM_152440 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 126.667-52 chr21 36083181 36083440 + 0.833333 NA intron (NR_040084, intron 2 of 3) AluSz6|SINE|Alu 13286 NM_001757 873 Hs.88778 NM_001757 ENSG00000159228 CBR1 CBR|SDR21C1|hCBR1 carbonyl reductase 1 protein-coding 144.667-72 chr4 104337146 104337357 + 0.833333 NA Intergenic L1PA15|LINE|L1 -153714 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 165.833-46 chr5 5032380 5032722 + 0.833333 NA Intergenic Intergenic -1808 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 196-5 chr10 34554175 34554540 + 0.833333 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 260939 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 130.167-70 chr7 15104212 15104393 + 0.833333 NA Intergenic Intergenic -129444 NM_001350722 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 166.333-33 chr2 39015445 39015734 + 0.833333 NA intron (NM_005633, intron 10 of 22) intron (NM_005633, intron 10 of 22) -55245 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 260.167-11 chr2 198617629 198618124 + 0.833333 NA Intergenic Intergenic -242779 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 143.167-79 chr8 117115424 117115722 + 0.833333 NA intron (NM_001172815, intron 2 of 10) L2a|LINE|L2 -19422 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 122.833-91 chr9 33078830 33079027 + 0.833333 NA Intergenic Intergenic -2254 NM_018225 55234 Hs.655351 NM_018225 ENSG00000122692 SMU1 BWD|SMU-1|fSAP57 SMU1 DNA replication regulator and spliceosomal factor protein-coding 152.167-72 chr8 80807080 80807607 + 0.833333 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 67125 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 164.833-46 chr8 17655358 17655762 + 0.833333 NA intron (NM_001001931, intron 6 of 11) AluSx1|SINE|Alu 20941 NM_001330470 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 224.333-8 chr13 109702379 109702800 + 0.833333 NA Intergenic L1MD|LINE|L1 -25685 NR_103846 101409253 Hs.578072 NR_103846 ENSG00000234854 LINC00676 - long intergenic non-protein coding RNA 676 ncRNA 202.833-6 chr13 112690389 112690653 + 0.833333 NA intron (NM_032189, intron 1 of 28) CpG 192 NM_032189 23250 Hs.29189 NM_015205 ENSG00000068650 ATP11A ATPIH|ATPIS ATPase phospholipid transporting 11A protein-coding 144.5-64 chr4 30367203 30367500 + 0.833333 NA Intergenic Intergenic -353018 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 125.333-61 chr18 62917721 62917880 + 0.833333 NA intron (NM_194449, intron 9 of 16) AluJo|SINE|Alu 202259 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 148.667-17 chr13 27940068 27940281 + 0.833333 NA Intergenic MER30|DNA|hAT-Charlie -13352 NR_135254 100132234 Hs.197435 NR_135254 ENSG00000260704 LINC00543 - long intergenic non-protein coding RNA 543 ncRNA 187-18 chr19 30177392 30177706 + 0.833333 NA Intergenic MER41A|LTR|ERV1 -194835 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 208.333-27 chr3 61220231 61220656 + 0.833333 NA intron (NM_001320900, intron 1 of 9) intron (NM_001320900, intron 1 of 9) 31009 NM_001320900 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 176.833-19 chr3 64069094 64069406 + 0.833333 NA intron (NR_045697, intron 1 of 2) L1M2|LINE|L1 1286 NR_045697 100652759 Hs.731187 NR_045697 ENSG00000241111 PRICKLE2-AS1 - PRICKLE2 antisense RNA 1 ncRNA 142-70 chr5 2910586 2910783 + 0.833333 NA Intergenic Intergenic -7170 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 131.333-105 chr9 9680537 9680740 + 0.833333 NA intron (NM_002839, intron 7 of 45) intron (NM_002839, intron 7 of 45) -118754 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 121.5-37 chr14 69843748 69843924 + 0.833333 NA Intergenic Intergenic 32076 NR_149012 100506358 NR_149012 LOC100506358 - uncharacterized LOC100506358 ncRNA 192-24 chr2 215024427 215024962 + 0.833333 NA intron (NR_103740, intron 12 of 54) intron (NR_103740, intron 12 of 54) 7392 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 128.667-9 chr1 189639167 189639394 + 0.833333 NA Intergenic L2a|LINE|L2 836730 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 123.667-116 chr8 121682441 121682598 + 0.833333 NA Intergenic L1MB8|LINE|L1 -41079 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 164.333-14 chr12 23930402 23930683 + 0.833333 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) 19128 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 195.167-4 chr11 25903827 25904108 + 0.833333 NA Intergenic Intergenic -285156 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 189.5-53 chr6 161844113 161844575 + 0.833333 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 373367 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 153.333-63 chr4 181639790 181640179 + 0.833333 NA Intergenic Intergenic 189989 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 142.833-72 chr7 81565869 81566373 + 0.833333 NA Intergenic Intergenic -4302 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 143-75 chr7 49468637 49468870 + 0.833333 NA Intergenic Intergenic -304885 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 263.667-7 chr15 46580503 46580908 + 0.833333 NA Intergenic L1ME1|LINE|L1 -603384 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 147.5-59 chr3 161625638 161625927 + 0.833333 NA Intergenic MER92-int|LTR|ERV1 128974 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 136.333-46 chr2 79966968 79967131 + 0.833333 NA intron (NM_001282598, intron 7 of 17) L2|LINE|L2 -100466 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 219.167-9 chr12 55500879 55501242 + 0.833333 NA Intergenic Intergenic 8682 NM_001005519 403284 Hs.626886 NM_001005519 ENSG00000205327 OR6C68 - olfactory receptor family 6 subfamily C member 68 protein-coding 152.833-32 chr2 79517499 79517871 + 0.833333 NA intron (NM_001164883, intron 1 of 16) intron (NM_001164883, intron 1 of 16) 4751 NM_001282597 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 174.167-32 chr5 20523807 20524061 + 0.833333 NA intron (NM_001349558, intron 1 of 15) GA-rich|Low_complexity|Low_complexity 51779 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 175.5-3 chr1 85028977 85029398 + 0.833333 NA exon (NM_001253693, exon 6 of 12) exon (NM_001253693, exon 6 of 12) 19313 NM_018298 55283 Hs.535239 NM_018298 ENSG00000055732 MCOLN3 TRP-ML3|TRPML3 mucolipin 3 protein-coding 175.167-20 chr14 64321105 64321419 + 0.833333 NA intron (NM_001291712, intron 2 of 13) L1MB8|LINE|L1 17288 NM_001291723 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 226.5-16 chr18 14055134 14055563 + 0.833333 NA Intergenic L1MD|LINE|L1 77087 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 330.667-3 chr10 121845987 121846918 + 0.833333 NA intron (NM_001001976, intron 8 of 11) L1MC3|LINE|L1 81579 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 126.833-26 chr12 29802896 29803304 + 0.833333 NA Intergenic Intergenic -18341 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 207.833-11 chr14 86530717 86531179 + 0.833333 NA Intergenic Intergenic -374830 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 176-6 chr11 37169320 37169662 + 0.833333 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -571212 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 152.833-70 chr8 73895504 73895696 + 0.833333 NA Intergenic L1MC5a|LINE|L1 16618 NR_147034 101926947 Hs.521636 NR_147034 LINC01617 C8orf23|NCRNA00249|XLOC_006844 long intergenic non-protein coding RNA 1617 ncRNA 266.333-11 chr4 113585286 113585661 + 0.833333 NA intron (NM_001221, intron 4 of 18) intron (NM_001221, intron 4 of 18) 176265 NM_001321591 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 190.667-4 chr10 4330670 4330941 + 0.833333 NA Intergenic Intergenic -53441 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 128.167-82 chr8 80055407 80055681 + 0.833333 NA intron (NR_105034, intron 1 of 4) L1MA5|LINE|L1 -25285 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 291.667-23 chr8 82854833 82855473 + 0.833333 NA Intergenic L1PA10|LINE|L1 -56951 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 178.167-15 chr15 60058013 60058445 + 0.833333 NA Intergenic L2c|LINE|L2 53918 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 120.833-63 chr7 40637490 40637768 + 0.833333 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 342310 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 172-13 chr12 44926368 44926645 + 0.833333 NA Intergenic Intergenic -12578 NM_001145110 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 205.667-30 chr2 35891993 35892250 + 0.833333 NA Intergenic L1MA3|LINE|L1 420716 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 226.667-2 chr1 95553538 95553943 + 0.833333 NA Intergenic Intergenic 43624 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 218.167-30 chrX 118570255 118570704 + 0.833333 NA intron (NM_144658, intron 10 of 52) intron (NM_144658, intron 10 of 52) 74570 NM_144658 139818 Hs.368203 NM_144658 ENSG00000147251 DOCK11 ACG|ZIZ2|bB128O4.1 dedicator of cytokinesis 11 protein-coding 120.167-49 chr20 52616648 52616834 + 0.833333 NA Intergenic Intergenic -4097 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 126.5-23 chr14 53610711 53610913 + 0.833333 NA Intergenic MIR|SINE|MIR 337672 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 140.667-89 chr8 120432122 120432414 + 0.833333 NA intron (NM_014078, intron 2 of 6) intron (NM_014078, intron 2 of 6) 12882 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 141.167-72 chr8 19478472 19478703 + 0.833333 NA intron (NM_001130518, intron 4 of 9) intron (NM_001130518, intron 4 of 9) 123958 NM_001354494 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 167.833-7 chr11 115238745 115239031 + 0.833333 NA intron (NM_001098517, intron 2 of 8) (AT)n|Simple_repeat|Simple_repeat -94689 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 121.167-48 chr20 55820302 55820708 + 0.833333 NA Intergenic Intergenic 185014 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 161.833-36 chr5 116794482 116794992 + 0.833333 NA Intergenic Intergenic -32528 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 138-113 chr9 4409854 4410135 + 0.833333 NA Intergenic AluSz6|SINE|Alu -80474 NM_004170 6505 Hs.444915 NM_004170 ENSG00000106688 SLC1A1 DCBXA|EAAC1|EAAT3|SCZD18 solute carrier family 1 member 1 protein-coding 210.167-16 chr2 122369183 122369443 + 0.833333 NA Intergenic Intergenic 613662 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 173.5-35 chr3 15261782 15262211 + 0.833333 NA intron (NR_046084, intron 2 of 2) intron (NR_046084, intron 2 of 2) 7812 NR_046084 100505696 Hs.745026 NR_046084 ENSG00000224660 SH3BP5-AS1 - SH3BP5 antisense RNA 1 ncRNA 137-22 chr11 111815817 111816038 + 0.833333 NA intron (NR_147984, intron 13 of 15) intron (NR_147984, intron 13 of 15) -49538 NM_181699 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 243.834-2 chr1 86746747 86747387 + 0.833333 NA 3' UTR (NM_001206651, exon 10 of 10) 3' UTR (NM_001206651, exon 10 of 10) 42491 NM_001206652 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 121.5-111 chr9 28666539 28666760 + 0.833333 NA intron (NM_152570, intron 2 of 6) MIR|SINE|MIR 52656 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 168.667-26 chr17 56553250 56553525 + 0.833333 NA Intergenic Charlie7|DNA|hAT-Charlie -40312 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 176-33 chr4 147657797 147658175 + 0.833333 NA intron (NM_001350143, intron 5 of 9) intron (NM_001350143, intron 5 of 9) 26177 NM_138364 90826 Hs.591692 NM_138364 ENSG00000164169 PRMT9 PRMT10 protein arginine methyltransferase 9 protein-coding 329.5-2 chr1 167432596 167433092 + 0.833333 NA intron (NM_000734, intron 7 of 7) intron (NM_000734, intron 7 of 7) 85685 NM_000734 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 137-49 chr19 32965982 32966295 + 0.833333 NA intron (NM_032816, intron 2 of 18) intron (NM_032816, intron 2 of 18) 5820 NM_032816 84902 Hs.599703 NM_032816 ENSG00000121289 CEP89 CCDC123|CEP123 centrosomal protein 89 protein-coding 113.5-8 chr1 223702914 223703074 + 0.833333 NA intron (NM_001146068, intron 1 of 20) L2b|LINE|L2 1401 NM_001146068 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 180.333-3 chr1 114685880 114686117 + 0.833333 NA intron (NM_001172626, intron 3 of 14) intron (NM_001172626, intron 3 of 14) 9620 NM_001172626 270 Hs.89570 NM_000036 ENSG00000116748 AMPD1 MAD|MADA|MMDD adenosine monophosphate deaminase 1 protein-coding 209.167-27 chr4 157591237 157591677 + 0.833333 NA Intergenic Intergenic 18967 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 212-29 chr4 149703736 149704167 + 0.833333 NA intron (NM_001363507, intron 5 of 13) intron (NM_001363507, intron 5 of 13) 111892 NM_001363509 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 253.167 chr14 28402847 28403293 + 0.833333 NA Intergenic Intergenic 362249 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 233.333-5 chr12 113013642 113014197 + 0.833333 NA Intergenic LTR26C|LTR|ERV1 35400 NM_001032731 4939 Hs.414332 NM_002535 ENSG00000111335 OAS2 - 2'-5'-oligoadenylate synthetase 2 protein-coding 156-85 chr8 63664804 63665220 + 0.833333 NA Intergenic L1PB1|LINE|L1 -104418 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 194.833-12 chr2 189334168 189334630 + 0.833333 NA Intergenic L1ME2|LINE|L1 -107034 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 209.333-16 chr2 72789158 72789555 + 0.833333 NA intron (NR_135774, intron 1 of 19) intron (NR_135774, intron 1 of 19) 36677 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 194.333-13 chr14 66888472 66889009 + 0.833333 NA intron (NM_001024218, intron 5 of 21) L1MB4|LINE|L1 -300700 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 124.667-60 chr2 71279519 71279753 + 0.833333 NA Intergenic L1ME4b|LINE|L1 -52119 NM_001014972 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 155.667-54 chr4 80221530 80221751 + 0.833333 NA Intergenic FAM|SINE|Alu 24137 NM_001099403 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 131-44 chr4 66744019 66744215 + 0.833333 NA Intergenic L1MEc|LINE|L1 467293 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 159-58 chr5 35579854 35580189 + 0.833333 NA Intergenic AluY|SINE|Alu -37842 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 231.167-13 chr2 183483354 183483733 + 0.833333 NA Intergenic L1M1|LINE|L1 359100 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 143.667-106 chr8 129105232 129105542 + 0.833333 NA Intergenic Intergenic 135853 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 124.167-74 chr5 126566556 126566892 + 0.833333 NA intron (NM_001202404, intron 9 of 15) (TATCCA)n|Simple_repeat|Simple_repeat 28495 NM_001202404 501 Hs.483239 NM_001182 ENSG00000164904 ALDH7A1 ATQ1|EPD|PDE aldehyde dehydrogenase 7 family member A1 protein-coding 213.333-45 chr8 77841609 77841987 + 0.833333 NA Intergenic L1PA13|LINE|L1 391101 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 188.667-51 chr5 143830917 143831168 + 0.833333 NA Intergenic L1MD3|LINE|L1 18881 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 212.167-2 chr1 71760713 71761223 + 0.833333 NA intron (NM_173808, intron 3 of 6) intron (NM_173808, intron 3 of 6) 76044 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 248-7 chr2 149801290 149801772 + 0.833333 NA intron (NR_145421, intron 3 of 4) intron (NR_145421, intron 3 of 4) 57660 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 148.5-77 chrX 50761008 50761231 + 0.833333 NA intron (NR_027121, intron 1 of 9) L1PREC2|LINE|L1 52925 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 115.167-117 chrX 79329159 79329313 + 0.833333 NA Intergenic L1MA10|LINE|L1 38098 NM_004867 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 167.5-13 chr10 117119521 117119783 + 0.833333 NA intron (NM_001258300, intron 1 of 17) L1MA2|LINE|L1 6934 NM_001258300 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 184.833-25 chr4 130206534 130206842 + 0.833333 NA Intergenic Intergenic -169673 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 266.167-16 chr5 17029410 17030014 + 0.833333 NA Intergenic AluSc8|SINE|Alu -93424 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 144.167-10 chr10 33258461 33258701 + 0.833333 NA intron (NM_001244973, intron 4 of 16) intron (NM_001244973, intron 4 of 16) 76086 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 195.333-50 chr6 54893651 54894050 + 0.833333 NA intron (NM_001010872, intron 2 of 4) intron (NM_001010872, intron 2 of 4) 47079 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 143-65 chr5 84623446 84623749 + 0.833333 NA Intergenic Intergenic -238717 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 213.667-38 chr6 66333801 66334140 + 0.833333 NA Intergenic AluY|SINE|Alu 546091 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 199.333-7 chr13 80049468 80049953 + 0.833333 NA Intergenic Intergenic 38633 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 271-13 chr7 29341836 29342308 + 0.833333 NA intron (NM_001293070, intron 2 of 13) L2b|LINE|L2 -133102 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 123.333-56 chr2 144435793 144435942 + 0.833333 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -83747 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 136.833-45 chr4 45778179 45778517 + 0.833333 NA Intergenic Intergenic 345706 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 197.5-50 chr7 92643619 92644031 + 0.833333 NA intron (NM_001259, intron 5 of 7) intron (NM_001259, intron 5 of 7) -53435 NR_109929 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 134.833-23 chr19 28860437 28860754 + 0.833333 NA Intergenic LTR8B|LTR|ERV1 -104536 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 167.833-61 chrX 79823718 79824051 + 0.833333 NA Intergenic PRIMA4-int|LTR|ERV1 -190869 NM_001109879 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 193-45 chr8 136894489 136895092 + 0.833333 NA intron (NR_147196, intron 4 of 5) L2b|LINE|L2 363992 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 128.833-67 chr5 5638344 5638528 + 0.833333 NA Intergenic Intergenic 215759 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 184.5-25 chr2 64932086 64932655 + 0.833333 NA promoter-TSS (NR_036586) promoter-TSS (NR_036586) 77 NR_036586 400958 Hs.591565 NR_036586 LINC02245 - long intergenic non-protein coding RNA 2245 ncRNA 203-30 chr4 30748641 30749121 + 0.833333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 28512 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 237.333-30 chr4 132754273 132754704 + 0.833333 NA Intergenic Intergenic 163399 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 142.833-66 chr6 120509346 120509619 + 0.833333 NA Intergenic L1MC3|LINE|L1 494303 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 165.833-41 chr3 115612744 115613224 + 0.833333 NA Intergenic L1PA10|LINE|L1 -10526 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 124.833-92 chrX 3505983 3506248 + 0.833333 NA Intergenic AluJr|SINE|Alu 26136 NR_145722 109616969 NR_145722 ENSG00000212214 SNORA48B - small nucleolar RNA, H/ACA box 48B snoRNA 136.333-16 chr11 73529028 73529234 + 0.833333 NA intron (NM_001286051, intron 1 of 5) intron (NM_001286051, intron 1 of 5) 68981 NM_001286051 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 126.5-11 chr11 91827069 91827452 + 0.833333 NA Intergenic MER58B|DNA|hAT-Charlie -397774 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 155.5-21 chr16 87049991 87050215 + 0.833333 NA Intergenic Intergenic -7681 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 153.333-69 chr6 115271024 115271243 + 0.833333 NA Intergenic Intergenic 372702 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 173.5-12 chr11 26772161 26772461 + 0.833333 NA Intergenic Intergenic -50251 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 206-16 chr2 5548257 5548523 + 0.833333 NA Intergenic Intergenic 142728 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 167.333-32 chr2 46528097 46528400 + 0.833333 NA intron (NM_001371282, intron 3 of 4) MER112|DNA|hAT-Charlie -14242 NM_012249 23433 Hs.709193 NM_012249 ENSG00000119729 RHOQ ARHQ|HEL-S-42|RASL7A|TC10|TC10A ras homolog family member Q protein-coding 136.5-52 chr2 160514641 160514865 + 0.833333 NA Intergenic L1ME1|LINE|L1 -20946 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 216.5-32 chr8 75376233 75376656 + 0.833333 NA Intergenic Intergenic -31205 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 223.833-15 chr17 70147700 70148086 + 0.833333 NA Intergenic MSTB1|LTR|ERVL-MaLR 21509 NR_036534 400617 Hs.225661 NR_036534 ENSG00000267365 KCNJ2-AS1 - KCNJ2 antisense RNA 1 ncRNA 135.167-44 chr2 34572296 34572537 + 0.833333 NA Intergenic Intergenic -105141 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 235.167-8 chr17 22529348 22529646 + 0.833333 NA Intergenic Intergenic 6386 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 252-3 chr11 21871809 21872320 + 0.833333 NA Intergenic L1MEc|LINE|L1 -321021 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 178.833-29 chr4 147173158 147173624 + 0.833333 NA Intergenic Intergenic 171326 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 115-65 chr5 130675960 130676187 + 0.833333 NA Intergenic Intergenic 489183 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 208.167-28 chr8 70307374 70307775 + 0.833333 NA intron (NM_001321703, intron 1 of 22) Charlie29a|DNA|hAT-Charlie 95816 NM_001321713 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 185.167-9 chr12 7957277 7957531 + 0.833333 NA Intergenic L1MC2|LINE|L1 -21217 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 186-13 chr12 125546668 125547281 + 0.833333 NA intron (NM_052907, intron 4 of 8) THE1C|LTR|ERVL-MaLR -75478 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 345.333-5 chr5 51327141 51327890 + 0.833333 NA Intergenic Intergenic 55817 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 228.167-6 chr14 44984939 44985249 + 0.833333 NA intron (NR_131765, intron 1 of 19) AluSg|SINE|Alu 22904 NR_131765 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 129-78 chr5 146420536 146420768 + 0.833333 NA Intergenic L1M8|LINE|L1 -26681 NM_006706 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 116.667-10 chr1 237098068 237098303 + 0.833333 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 56001 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 195.333-41 chr5 25027006 25027348 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 163479 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 135-93 chr9 26217614 26217841 + 0.833333 NA Intergenic Intergenic 151052 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 143.333-14 chr12 66618489 66618724 + 0.833333 NA intron (NM_001366724, intron 1 of 23) intron (NM_001366724, intron 1 of 23) 60470 NM_021150 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 125.5-29 chr17 31556286 31556495 + 0.833333 NA Intergenic MER112|DNA|hAT-Charlie -3606 NR_029710 406968 NR_029710 ENSG00000207614 MIR193A MIRN193|MIRN193A|mir-193a microRNA 193a ncRNA 123.333-6 chr1 109332305 109332604 + 0.833333 NA intron (NM_001205228, intron 11 of 19) AluJr|SINE|Alu -25443 NM_001265613 343263 Hs.443402 NM_001010985 ENSG00000221986 MYBPHL - myosin binding protein H like protein-coding 125.5-43 chr2 178783103 178783301 + 0.833333 NA intron (NM_133379, intron 17 of 45) intron (NM_133379, intron 17 of 45) 6276 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 175.834-6 chr5 5020186 5020708 + 0.833333 NA Intergenic Intergenic -13912 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 113.833-86 chr8 56286330 56286575 + 0.833333 NA Intergenic Intergenic 34324 NM_138969 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 114.833-35 chr2 128242638 128242847 + 0.833333 NA Intergenic L1MA4A|LINE|L1 76126 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 227.333-2 chr1 158395131 158395579 + 0.833333 NA Intergenic Intergenic 4111 NM_001004475 128360 Hs.553588 NM_001004475 ENSG00000186306 OR10T2 OR1-3 olfactory receptor family 10 subfamily T member 2 protein-coding 230.333-9 chr2 47038669 47039196 + 0.833333 NA intron (NM_001288951, intron 15 of 20) L2c|LINE|L2 -97077 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 193.833-32 chr6 46569600 46569954 + 0.833333 NA intron (NM_016593, intron 10 of 11) L1M2|LINE|L1 -77710 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 163.833-36 chr2 205199653 205199999 + 0.833333 NA intron (NM_205863, intron 15 of 21) L3|LINE|CR1 -482674 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 173.833-35 chr3 1436617 1437035 + 0.833333 NA Intergenic Intergenic 343802 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 199.167-8 chr11 78569460 78569931 + 0.833333 NA intron (NM_024678, intron 2 of 13) Helitron3Na_Mam|RC|Helitron 5169 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 142.167-28 chr17 56677404 56677644 + 0.833333 NA Intergenic Intergenic 83825 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 288.167-3 chr13 108356844 108357423 + 0.833333 NA Intergenic Intergenic 87504 NM_001145645 10673 Hs.525157 NM_006573 ENSG00000102524 TNFSF13B BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 TNF superfamily member 13b protein-coding 309-10 chr9 34343834 34344434 + 0.833333 NA TTS (NM_001244390) TTS (NM_001244390) 14565 NM_147173 318 Hs.493767 NM_001161 ENSG00000164978 NUDT2 APAH1 nudix hydrolase 2 protein-coding 114.167-94 chr8 103285354 103285556 + 0.833333 NA intron (NR_148213, intron 2 of 3) intron (NR_148213, intron 2 of 3) -13039 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 124-54 chr2 129290934 129291149 + 0.833333 NA Intergenic Intergenic -17150 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 223-4 chr11 14460838 14461256 + 0.833333 NA intron (NM_016451, intron 19 of 21) intron (NM_016451, intron 19 of 21) 38811 NM_016451 1315 Hs.339278 NM_016451 ENSG00000129083 COPB1 COPB coatomer protein complex subunit beta 1 protein-coding 120-106 chr8 104031283 104031534 + 0.833333 NA intron (NR_145710, intron 24 of 29) intron (NR_145710, intron 24 of 29) -191927 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 199.833-25 chr6 50592046 50592607 + 0.833333 NA Intergenic Intergenic -121218 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 146.5-76 chr6 142163029 142163347 + 0.833333 NA intron (NM_001286372, intron 1 of 5) MLT1J|LTR|ERVL-MaLR 15925 NM_016485 51534 Hs.431367 NM_016485 ENSG00000009844 VTA1 C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1 vesicle trafficking 1 protein-coding 172.5-31 chr2 186304836 186305447 + 0.833333 NA Intergenic Intergenic -181119 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 168-53 chr5 30050928 30051431 + 0.833333 NA Intergenic Intergenic 170619 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 266.667-26 chr9 24612649 24613226 + 0.833333 NA Intergenic MER20|DNA|hAT-Charlie -67040 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 122.833-38 chr17 82475640 82475880 + 0.833333 NA intron (NM_001038618, intron 5 of 10) intron (NM_001038618, intron 5 of 10) 17019 NM_001083608 26502 Hs.256526 NM_012336 ENSG00000141562 NARF IOP2 nuclear prelamin A recognition factor protein-coding 175-33 chr2 210119019 210119306 + 0.833333 NA intron (NM_001307976, intron 3 of 13) AluSc|SINE|Alu 52247 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 196.667-38 chr3 168825631 168826108 + 0.833333 NA intron (NR_021485, intron 15 of 15) intron (NR_021485, intron 15 of 15) -76076 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 124.667-103 chr5 136531731 136532016 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -166397 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 125.333-39 chr13 99263171 99263635 + 0.833333 NA intron (NR_026644, intron 4 of 8) L1ME3B|LINE|L1 -4975 NM_005292 2841 Hs.741589 NM_005292 ENSG00000125245 GPR18 - G protein-coupled receptor 18 protein-coding 189.167-5 chr1 180037217 180037780 + 0.833333 NA intron (NM_014810, intron 17 of 37) intron (NM_014810, intron 17 of 37) 82688 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 253.5-10 chr14 27883755 27884185 + 0.833333 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR -210749 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 144.167-35 chr2 24576825 24577104 + 0.833333 NA intron (NM_001362955, intron 3 of 23) intron (NM_001362955, intron 3 of 23) -7513 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 201.167-21 chr5 13155956 13156478 + 0.833333 NA Intergenic Intergenic -123331 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 126-11 chr10 57860780 57861075 + 0.833333 NA Intergenic Intergenic 406967 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 302.167-4 chr2 35616097 35616799 + 0.833333 NA Intergenic L1M2|LINE|L1 145043 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 124.5-3 chr1 176106689 176106954 + 0.833333 NA intron (NM_022457, intron 9 of 19) LTR8|LTR|ERV1 100423 NM_001286644 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 165.167-11 chr12 108825877 108826191 + 0.833333 NA intron (NM_018984, intron 2 of 14) intron (NM_018984, intron 2 of 14) 1517 NM_001161331 54434 Hs.199763 NM_018984 ENSG00000084112 SSH1 SSH1L slingshot protein phosphatase 1 protein-coding 167.667-25 chr14 43830731 43831076 + 0.833333 NA Intergenic Intergenic 676380 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 141-3 chr1 160625464 160625859 + 0.833333 NA intron (NM_001330754, intron 3 of 7) intron (NM_001330754, intron 3 of 7) 21383 NR_104401 6504 Hs.523660 NM_003037 ENSG00000117090 SLAMF1 CD150|CDw150|SLAM signaling lymphocytic activation molecule family member 1 protein-coding 190.167-28 chr20 41983035 41983414 + 0.833333 NA Intergenic L2c|LINE|L2 -364847 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 170.167-50 chr7 111207904 111208131 + 0.833333 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 116890 NM_018334 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 176.5-7 chr10 51043619 51044033 + 0.833333 NA intron (NM_001098512, intron 1 of 17) intron (NM_001098512, intron 1 of 17) 24726 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 246.5-21 chr7 102898268 102898704 + 0.833333 NA intron (NR_105043, intron 12 of 20) AluJo|SINE|Alu -14514 NM_001031692 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 156.667-77 chr6 124703973 124704319 + 0.833333 NA intron (NM_001040214, intron 4 of 6) L3|LINE|CR1 -258399 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 144.833-27 chr17 77743876 77744166 + 0.833333 NA Intergenic Intergenic -15462 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 127.333-81 chr3 159451132 159451396 + 0.833333 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 168618 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 202-7 chr12 42791631 42792058 + 0.833333 NA Intergenic Intergenic 99628 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 294.667-3 chr17 61282687 61283183 + 0.833333 NA intron (NM_001330413, intron 23 of 25) (AT)n|Simple_repeat|Simple_repeat 84769 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 119.5-74 chr5 3528505 3528766 + 0.833333 NA intron (NR_033898, intron 2 of 4) intron (NR_033898, intron 2 of 4) 7459 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 143.833-48 chr7 37908846 37909079 + 0.833333 NA intron (NM_003014, intron 5 of 5) intron (NM_003014, intron 5 of 5) 7855 NM_003014 6424 Hs.658169 NM_003014 ENSG00000106483 SFRP4 FRP-4|FRPHE|FRZB-2|PYL|sFRP-4 secreted frizzled related protein 4 protein-coding 186.5-35 chr2 50467752 50468123 + 0.833333 NA intron (NM_001330093, intron 16 of 22) intron (NM_001330093, intron 16 of 22) -120181 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 139.833-32 chr17 71864305 71864558 + 0.833333 NA Intergenic Intergenic 161548 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 197-52 chr8 120965794 120966141 + 0.833333 NA Intergenic Intergenic -153921 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 208.333-42 chr8 124616491 124616959 + 0.833333 NA intron (NM_001282971, intron 3 of 14) MLT1N2|LTR|ERVL-MaLR 77602 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 166.5-37 chr3 147322905 147323263 + 0.833333 NA Intergenic Intergenic 69346 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 183-21 chr2 51181263 51181718 + 0.833333 NA intron (NR_135237, intron 2 of 10) L1PB1|LINE|L1 148889 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 144.167-36 chr2 98891465 98891653 + 0.833333 NA intron (NM_207362, intron 1 of 9) intron (NM_207362, intron 1 of 9) 44666 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 135.333-68 chr6 61895218 61895565 + 0.833333 NA intron (NR_146874, intron 5 of 13) intron (NR_146874, intron 5 of 13) 321261 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 126.333-70 chr21 24500647 24500899 + 0.833333 NA intron (NR_135519, intron 1 of 2) AluSz|SINE|Alu 72033 NR_135520 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 148.333-44 chr2 81242567 81243113 + 0.833333 NA Intergenic Intergenic 224106 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 167.833-3 chr1 218903107 218903389 + 0.833333 NA intron (NR_031644, intron 6 of 6) L1PA10|LINE|L1 15263 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 205.5-21 chr2 38078926 38079308 + 0.833333 NA Intergenic L4_C_Mam|LINE|RTE-X -2936 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 ASGD6|CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450 family 1 subfamily B member 1 protein-coding 135.667-4 chr1 102017682 102017845 + 0.833333 NA Intergenic Intergenic -20529 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 197.333-19 chr15 65317882 65318259 + 0.833333 NA Intergenic AluSx1|SINE|Alu 13393 NR_002757 26832 NR_002757 ENSG00000200156 RNU5B-1 RNU5B|RNU5B-1P|U5B1 RNA, U5B small nuclear 1 snRNA 217.333-9 chr13 73151690 73152005 + 0.833333 NA Intergenic MIRb|SINE|MIR 92842 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 227.667-9 chr14 57758063 57758375 + 0.833333 NA intron (NR_159373, intron 1 of 10) L1MEc|LINE|L1 106780 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 259.667-18 chr3 103699619 103700408 + 0.833333 NA Intergenic Intergenic -175897 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 259.167-16 chr6 130223458 130223910 + 0.833333 NA promoter-TSS (NM_001017373) promoter-TSS (NM_001017373) -733 NM_001017373 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 133.833-73 chr7 42631665 42631927 + 0.833333 NA Intergenic Intergenic 74651 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 185.167-8 chr12 2727262 2727724 + 0.833333 NA Intergenic (AATG)n|Simple_repeat|Simple_repeat -36336 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 179-53 chr8 114970849 114971218 + 0.833333 NA Intergenic Intergenic 696980 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 320.333-5 chr3 17271976 17272420 + 0.833333 NA intron (NM_014744, intron 15 of 21) intron (NM_014744, intron 15 of 21) 339002 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 134.667-8 chr10 34012222 34012474 + 0.833333 NA Intergenic MER4D|LTR|ERV1 -239668 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 219.333-43 chr8 119561938 119562227 + 0.833333 NA intron (NM_001330600, intron 25 of 25) AluY|SINE|Alu 30926 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 181.833-59 chrX 155009503 155009804 + 0.833333 NA intron (NM_000132, intron 1 of 25) AluSx|SINE|Alu 13070 NM_000132 2157 Hs.632836 NM_000132 ENSG00000185010 F8 AHF|DXS1253E|F8B|F8C|FVIII|HEMA coagulation factor VIII protein-coding 174.333-65 chr8 83739564 83739996 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR 336022 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 242.667-3 chr1 246826959 246827321 + 0.833333 NA Intergenic L1MB8|LINE|L1 37523 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 136.5-20 chr11 90922677 90922861 + 0.833333 NA Intergenic Intergenic -53567 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 173.833-21 chr14 73197625 73197845 + 0.833333 NA intron (NM_000021, intron 7 of 11) intron (NM_000021, intron 7 of 11) -39771 NM_173462 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 158.167-31 chr21 22306268 22306600 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger 207817 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 220-27 chr9 91992606 91992914 + 0.833333 NA Intergenic Intergenic -42532 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 319-6 chr20 44041122 44041821 + 0.833333 NA intron (NM_001098797, intron 3 of 8) intron (NM_001098797, intron 3 of 8) 95575 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 123.333-95 chr6 119106635 119106833 + 0.833333 NA intron (NM_001288576, intron 1 of 15) MIRb|SINE|MIR -28070 NM_024581 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 132.667-50 chr2 98427589 98427790 + 0.833333 NA Intergenic L1M4|LINE|L1 -16898 NM_001351424 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 318.667-6 chr6 61945811 61946220 + 0.833333 NA intron (NR_146874, intron 4 of 13) GA-rich|Low_complexity|Low_complexity 340210 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 253.667-2 chr11 79703258 79703677 + 0.833333 NA Intergenic L1PREC2|LINE|L1 -262437 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 312.5-8 chr4 57352839 57353377 + 0.833333 NA Intergenic Intergenic -72764 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 156.333-94 chr9 20813513 20813895 + 0.833333 NA intron (NM_017794, intron 13 of 45) L1MB1|LINE|L1 26777 NR_145762 109616992 NR_145762 ENSG00000202189 SNORA30B - small nucleolar RNA, H/ACA box 30B snoRNA 163.833-55 chr7 154685113 154685355 + 0.833333 NA intron (NR_157196, intron 7 of 25) intron (NR_157196, intron 7 of 25) -243283 NR_024476 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1-AS2 PAXIP1OS PAXIP1 antisense RNA 2 ncRNA 194.167-31 chr6 35719186 35719578 + 0.833333 NA intron (NM_001145775, intron 2 of 11) L1ME2|LINE|L1 9201 NM_001145775 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 151.667-77 chr7 3924148 3924445 + 0.833333 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -205389 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 222-13 chr15 23890636 23891023 + 0.833333 NA Intergenic Intergenic -84318 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 197.5-3 chr1 107843665 107843984 + 0.833333 NA intron (NM_006113, intron 2 of 26) intron (NM_006113, intron 2 of 26) -53399 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 197.5-57 chrX 93688214 93688627 + 0.833333 NA intron (NM_001171110, intron 3 of 4) intron (NM_001171110, intron 3 of 4) 14214 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 133-69 chr4 121541837 121542170 + 0.833333 NA Intergenic L1MA9|LINE|L1 154977 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 244.667-14 chr2 124603519 124603834 + 0.833333 NA intron (NM_130773, intron 11 of 23) L1MC5a|LINE|L1 578389 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 188.833-10 chr12 506912 507282 + 0.833333 NA intron (NM_173593, intron 1 of 19) L1MC3|LINE|L1 47158 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 119.333-95 chr6 135527843 135528195 + 0.833333 NA intron (NR_152845, intron 2 of 4) intron (NR_152845, intron 2 of 4) 30218 NR_152844 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 155.667-63 chr5 108279664 108280009 + 0.833333 NA intron (NM_001163315, intron 4 of 8) L1PB4|LINE|L1 102262 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 159-27 chr15 63007998 63008477 + 0.833333 NA Intergenic L2a|LINE|L2 -34510 NM_001301244 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 207.833-6 chr10 63491555 63491984 + 0.833333 NA intron (NM_001322258, intron 1 of 24) intron (NM_001322258, intron 1 of 24) -25792 NM_032776 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 153.833-57 chr7 79063815 79064126 + 0.833333 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 54982 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 198.333-50 chrX 134760043 134760295 + 0.833333 NA intron (NM_001316887, intron 1 of 3) intron (NM_001316887, intron 1 of 3) 4153 NM_001316887 10761 Hs.496811 NM_021796 ENSG00000170965 PLAC1 CT92|OOSP2B|OOSP2L placenta enriched 1 protein-coding 233.333-4 chr12 100757421 100757895 + 0.833333 NA Intergenic L3|LINE|CR1 -37118 NM_178826 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 256.833-4 chr11 81798275 81798673 + 0.833333 NA Intergenic Intergenic 92362 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 180-29 chr22 24926818 24927163 + 0.833333 NA TTS (NM_133454) TTS (NM_133454) 19705 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 121.833-61 chr5 100720816 100721270 + 0.833333 NA Intergenic Intergenic 95522 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 216.667-23 chr2 134564333 134564637 + 0.833333 NA intron (NM_030923, intron 2 of 7) L1ME3A|LINE|L1 154515 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 122.667-51 chr20 13533552 13533959 + 0.833333 NA intron (NM_017714, intron 9 of 13) intron (NM_017714, intron 9 of 13) 105177 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 526.5 chr21 27599324 27600288 + 0.833333 NA Intergenic L1PA14|LINE|L1 -122573 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 138.667-12 chr10 104567736 104568104 + 0.833333 NA Intergenic L1MA8|LINE|L1 -73370 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 176.333-54 chr6 122051099 122051480 + 0.833333 NA Intergenic Intergenic -348262 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 158.5-78 chr7 49247718 49248134 + 0.833333 NA Intergenic Intergenic 323379 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 193.5-9 chr12 1015403 1015787 + 0.833333 NA intron (NR_027948, intron 1 of 19) L1ME4b|LINE|L1 -12153 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 143-62 chr5 13851083 13851410 + 0.833333 NA intron (NM_001369, intron 30 of 78) intron (NM_001369, intron 30 of 78) 93234 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 148.333-31 chr13 92934095 92934551 + 0.833333 NA Intergenic Intergenic -111018 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 205.167-16 chr14 71983094 71983573 + 0.833333 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 49806 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 227.833-21 chr6 39069043 39069442 + 0.833333 NA intron (NR_136563, intron 5 of 13) MLT1A1-int|LTR|ERVL-MaLR -5072 NR_162114 113218508 NR_162114 MIR9983 - microRNA 9983 ncRNA 242.167-8 chr10 120540423 120541005 + 0.833333 NA intron (NM_001030059, intron 5 of 6) intron (NM_001030059, intron 5 of 6) -57235 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 132.167-58 chr5 180852825 180853045 + 0.833333 NA intron (NM_152283, intron 1 of 2) L1MC4a|LINE|L1 8351 NM_001172638 643836 Hs.509227 NM_152283 ENSG00000196670 ZFP62 ZET|ZNF755 ZFP62 zinc finger protein protein-coding 140.5-82 chr9 76761111 76761407 + 0.833333 NA intron (NM_001308048, intron 6 of 17) intron (NM_001308048, intron 6 of 17) -3177 NR_132312 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 128.667-25 chr11 79409383 79409604 + 0.833333 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) -7384 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 135.167-51 chr2 170758643 170758943 + 0.833333 NA intron (NR_110185, intron 1 of 5) AluSz6|SINE|Alu -11889 NM_001290030 285141 Hs.443729 NM_001289947 ENSG00000204334 ERICH2 - glutamate rich 2 protein-coding 117.5-50 chr4 47220079 47220435 + 0.833333 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 188690 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 145.333-41 chr2 160255953 160256270 + 0.833333 NA Intergenic Intergenic 15784 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000285373 LINC02478 - long intergenic non-protein coding RNA 2478 ncRNA 113.167-28 chr17 83163063 83163267 + 0.833333 NA Intergenic Intergenic -63732 NR_029406 388574 Hs.546918 NR_029406 ENSG00000232938 RPL23AP87 - ribosomal protein L23a pseudogene 87 pseudo 114.167-86 chr6 105037263 105037585 + 0.833333 NA intron (NM_001004317, intron 3 of 3) intron (NM_001004317, intron 3 of 3) 80317 NM_001004317 389421 Hs.23616 NM_001004317 ENSG00000187772 LIN28B CSDD2 lin-28 homolog B protein-coding 261.833-8 chr17 40128658 40129249 + 0.833333 NA intron (NM_001012241, intron 3 of 9) AluSx|SINE|Alu 6982 NM_001365919 339287 Hs.532786 NM_001012241 ENSG00000188895 MSL1 MSL-1 MSL complex subunit 1 protein-coding 213.167-16 chr20 46802493 46802863 + 0.833333 NA Intergenic Intergenic -91946 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 223.333-38 chr7 32437327 32437931 + 0.833333 NA Intergenic Intergenic -9405 NM_001322059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 218.5-3 chr10 22810329 22810716 + 0.833333 NA Intergenic MSTA1|LTR|ERVL-MaLR -95944 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 295.5-2 chr10 84851918 84852666 + 0.833333 NA Intergenic L2a|LINE|L2 346613 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 191.333-38 chr8 26805736 26806119 + 0.833333 NA intron (NM_001322504, intron 1 of 1) intron (NM_001322504, intron 1 of 1) 59728 NM_033302 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 119.5-102 chr8 116562730 116562977 + 0.833333 NA Intergenic Intergenic -89247 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 136-80 chr8 32992875 32993242 + 0.833333 NA Intergenic L1MA2|LINE|L1 271223 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 265.333-15 chr3 182393179 182393574 + 0.833333 NA Intergenic L2a|LINE|L2 92986 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 153-28 chr2 74250920 74251393 + 0.833333 NA intron (NM_133478, intron 16 of 30) MER20|DNA|hAT-Charlie 52541 NM_006636 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 229.667-24 chr4 58958284 58958884 + 0.833333 NA Intergenic Intergenic -25698 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 132.5-3 chr1 150385209 150385483 + 0.833333 NA intron (NM_015203, intron 1 of 10) AluJb|SINE|Alu 21235 NM_015203 23248 Hs.213666 NM_015203 ENSG00000163125 RPRD2 HSPC099|KIAA0460 regulation of nuclear pre-mRNA domain containing 2 protein-coding 127.667-49 chr2 182381359 182381700 + 0.833333 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) 45519 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 233.333-33 chr4 72199754 72200143 + 0.833333 NA Intergenic L1M1|LINE|L1 160816 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 166.167-60 chr7 53869175 53869664 + 0.833333 NA Intergenic L1MD1|LINE|L1 -57488 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 225.5-37 chr4 32471259 32471660 + 0.833333 NA Intergenic Intergenic 120421 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 159-28 chr16 73711003 73711488 + 0.833333 NA Intergenic Intergenic 324440 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 143.833-54 chr8 91361027 91361509 + 0.833333 NA intron (NM_134266, intron 11 of 18) (CAA)n|Simple_repeat|Simple_repeat 111949 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 275.5-3 chr15 62220973 62221549 + 0.833333 NA Intergenic Intergenic -17943 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 245.167-3 chr2 28066798 28067315 + 0.833333 NA intron (NM_199193, intron 7 of 13) AluSq2|SINE|Alu 70689 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 143-59 chr4 187807356 187807607 + 0.833333 NA Intergenic Intergenic -134840 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 164-73 chr8 105156762 105157148 + 0.833333 NA Intergenic Intergenic -161483 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 157.5-37 chr2 233778749 233779063 + 0.833333 NA intron (NM_001367507, intron 1 of 41) MLT1E|LTR|ERVL-MaLR 3182 NM_001367507 339766 Hs.361778 NM_001287395 ENSG00000185038 MROH2A HEATR7B1 maestro heat like repeat family member 2A protein-coding 259-23 chr6 140397381 140397977 + 0.833333 NA Intergenic Intergenic 192427 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 131.333-110 chrUn_KI270337v1 683 908 + 0.833333 NA NA SAR|Satellite|Satellite NA NA 293.333-19 chr9 86568156 86568650 + 0.833333 NA Intergenic LTR16|LTR|ERVL -213993 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 176.833-39 chr9 133599045 133599429 + 0.833333 NA Intergenic L2b|LINE|L2 -18991 NM_001080515 642968 Hs.173134 NM_001080515 ENSG00000196990 FAM163B C9orf166 family with sequence similarity 163 member B protein-coding 113.5-65 chr3 186432794 186433161 + 0.833333 NA Intergenic L1M4|LINE|L1 -7368 NR_151708 107986164 Hs.131227 NR_151708 ENSG00000234548 LINC02020 - long intergenic non-protein coding RNA 2020 ncRNA 150.5-47 chr22 19281617 19281818 + 0.833333 NA intron (NM_007098, intron 1 of 32) intron (NM_007098, intron 1 of 32) 10002 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 238.5-6 chr10 53209018 53209354 + 0.833333 NA Intergenic MIR3|SINE|MIR -437486 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 260.667-14 chr21 34712323 34712745 + 0.833333 NA intron (NM_001317009, intron 6 of 6) L1M7|LINE|L1 24648 NR_024351 54064 Hs.436868 NR_024351 ENSG00000230978 LINC00160 C21orf52|NCRNA00160 long intergenic non-protein coding RNA 160 ncRNA 166.5-2 chr1 203596968 203597227 + 0.833333 NA Intergenic Intergenic -29690 NM_001001396 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 176.667-31 chr2 45966195 45966674 + 0.833333 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 314759 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 261.167-7 chr17 47732379 47732727 + 0.833333 NA promoter-TSS (NM_013351) promoter-TSS (NM_013351) -683 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 287-2 chr11 111340827 111341296 + 0.833333 NA Intergenic AluSp|SINE|Alu -6696 NR_039712 100616330 NR_039712 ENSG00000264032 MIR4491 mir-4491 microRNA 4491 ncRNA 177.5-5 chr1 103477294 103477542 + 0.833333 NA intron (NM_001347929, intron 1 of 5) LTR89|LTR|ERVL? 48093 NM_001347929 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 120.667-56 chr2 51568712 51568969 + 0.833333 NA intron (NR_135237, intron 5 of 10) L1MEc|LINE|L1 536239 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 237.5-36 chr9 29165048 29165537 + 0.833333 NA intron (NM_001354574, intron 1 of 5) L2a|LINE|L2 47007 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 163.333-55 chr3 183658420 183658740 + 0.833333 NA intron (NM_001349428, intron 4 of 8) L1ME4b|LINE|L1 22957 NM_001349420 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 185.667-61 chr9 17975047 17975386 + 0.833333 NA Intergenic L1MA9|LINE|L1 396150 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 194.167-42 chr9 101758834 101759174 + 0.833333 NA Intergenic Intergenic -20424 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 156.167-54 chr7 26648190 26648605 + 0.833333 NA Intergenic Intergenic 10526 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 211.5-37 chr9 99774665 99775039 + 0.833333 NA intron (NR_109802, intron 2 of 6) intron (NR_109802, intron 2 of 6) 45037 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 129.167-46 chr20 57834812 57835081 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR -123410 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 173-29 chr2 119348333 119348735 + 0.833333 NA intron (NM_001322329, intron 1 of 6) AluSq2|SINE|Alu 18208 NM_001322330 130355 Hs.99488 NM_001017927 ENSG00000186132 C2orf76 AIM29 chromosome 2 open reading frame 76 protein-coding 121.5-14 chr10 32451027 32451241 + 0.833333 NA intron (NR_109827, intron 1 of 8) intron (NR_109827, intron 1 of 8) 4994 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 164.333-26 chr17 67722310 67722565 + 0.833333 NA intron (NM_001303272, intron 4 of 16) intron (NM_001303272, intron 4 of 16) 4501 NM_015462 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 131.667-117 chr7 13062532 13062800 + 0.833333 NA Intergenic Intergenic 375033 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 204.167-37 chr9 85549765 85550079 + 0.833333 NA intron (NM_015239, intron 25 of 25) intron (NM_015239, intron 25 of 25) 192107 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 261.833-2 chr11 5082039 5082581 + 0.833333 NA Intergenic L1MA5|LINE|L1 12938 NM_001348221 79296 NM_001348221 ENSG00000273085 OR52E1 OR52E1P olfactory receptor family 52 subfamily E member 1 (gene/pseudogene) protein-coding 167-45 chr5 81143484 81143793 + 0.833333 NA intron (NM_006909, intron 17 of 26) AluSg|SINE|Alu -89682 NM_001825 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 132.667-67 chr4 30754884 30755323 + 0.833333 NA intron (NM_032457, intron 1 of 2) MIRb|SINE|MIR 34734 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 377.833 chr1 110960548 110961296 + 0.833333 NA intron (NM_018372, intron 1 of 3) intron (NM_018372, intron 1 of 3) 3000 NM_018372 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 223.333-29 chr4 186860910 186861371 + 0.833333 NA Intergenic L1M5|LINE|L1 -137284 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 161-60 chr6 50434115 50434437 + 0.833333 NA Intergenic Intergenic -279268 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 152.833-19 chr16 49166858 49167063 + 0.833333 NA Intergenic L1ME1|LINE|L1 114878 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 115.5-80 chr5 106955589 106955962 + 0.833333 NA intron (NR_104671, intron 2 of 3) MER45A|DNA|hAT-Tip100 55239 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 170.5-15 chr12 119652460 119652823 + 0.833333 NA Intergenic L1MEf|LINE|L1 -15492 NM_006253 5564 Hs.741184 NM_006253 ENSG00000111725 PRKAB1 AMPK|HAMPKb protein kinase AMP-activated non-catalytic subunit beta 1 protein-coding 119.5-30 chr14 46481416 46481665 + 0.833333 NA intron (NR_102700, intron 1 of 1) intron (NR_102700, intron 1 of 1) 10181 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 133-17 chr11 91143976 91144283 + 0.833333 NA Intergenic MER4D|LTR|ERV1 -274927 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 181.5-33 chr20 21012195 21012572 + 0.833333 NA Intergenic Intergenic 93975 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 252.5-20 chr5 151881756 151882370 + 0.833333 NA intron (NM_000171, intron 3 of 8) MIR3|SINE|MIR 42788 NM_000171 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 132.333-80 chr4 163568967 163569177 + 0.833333 NA intron (NM_017923, intron 2 of 3) intron (NM_017923, intron 2 of 3) 44462 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 269.167-2 chr10 99498345 99498811 + 0.833333 NA Intergenic Intergenic 32599 NR_120618 101927324 Hs.642588 NR_120618 ENSG00000257582 LINC01475 - long intergenic non-protein coding RNA 1475 ncRNA 133-78 chr6 22739223 22739503 + 0.833333 NA Intergenic Intergenic -21439 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 177.833-10 chr15 57148952 57149306 + 0.833333 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -70301 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 161.333-31 chr17 53237038 53237475 + 0.833333 NA Intergenic Intergenic 251751 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 207.5-8 chr12 33184783 33185310 + 0.833333 NA Intergenic Intergenic 254773 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 127.167-99 chrX 150613359 150613630 + 0.833333 NA intron (NM_000252, intron 4 of 14) L1ME4c|LINE|L1 44897 NM_000252 4534 Hs.655056 NM_000252 ENSG00000171100 MTM1 CNM|MTMX|XLMTM myotubularin 1 protein-coding 148.167-27 chr16 63055066 63055527 + 0.833333 NA Intergenic L1M5|LINE|L1 -1018858 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 116.167-29 chr17 60495810 60495953 + 0.833333 NA intron (NM_001282476, intron 1 of 11) L1MB7|LINE|L1 30359 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 205-6 chr13 98184724 98185225 + 0.833333 NA intron (NM_005766, intron 1 of 26) MER63B|DNA|hAT-Blackjack -7705 NM_178861 140432 Hs.296045 NM_178861 ENSG00000139797 RNF113B RNF161|ZNF183L1|bA10G5.1 ring finger protein 113B protein-coding 234.333-22 chr3 120865776 120866483 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR -29772 NR_135570 101926983 Hs.553055 NR_135570 ENSG00000243593 LINC02049 - long intergenic non-protein coding RNA 2049 ncRNA 243-9 chr12 12343274 12343655 + 0.833333 NA intron (NM_001363613, intron 1 of 4) intron (NM_001363613, intron 1 of 4) 6778 NM_001363613 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 196.5-5 chr10 53907153 53907511 + 0.833333 NA intron (NM_001354411, intron 26 of 34) intron (NM_001354411, intron 26 of 34) -578898 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 170.167-7 chr11 23558117 23558397 + 0.833333 NA Intergenic Intergenic -139067 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 236.667-10 chr14 90652555 90652873 + 0.833333 NA intron (NM_001320421, intron 13 of 20) intron (NM_001320421, intron 13 of 20) 10085 NR_110134 101928909 Hs.662545 NR_110134 ENSG00000259163 LOC101928909 - uncharacterized LOC101928909 ncRNA 129.667-106 chr8 109714447 109714696 + 0.833333 NA Intergenic Intergenic -22780 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 211-18 chr17 53549159 53549502 + 0.833333 NA Intergenic L1MA9|LINE|L1 -273597 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 279.167-11 chr4 60592404 60592886 + 0.833333 NA Intergenic Intergenic -329974 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 199.167-5 chr10 59374186 59374487 + 0.833333 NA Intergenic Intergenic -11155 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 136.333-71 chr5 9535523 9535782 + 0.833333 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) 10423 NM_003966 9037 Hs.27621 NM_003966 ENSG00000112902 SEMA5A SEMAF|semF semaphorin 5A protein-coding 240.667-17 chr2 25404240 25404554 + 0.833333 NA intron (NM_001351385, intron 14 of 17) intron (NM_001351385, intron 14 of 17) -61807 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 166.333-67 chr6 76119573 76119787 + 0.833333 NA Intergenic MER20B|DNA|hAT-Charlie -47002 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 141-28 chr14 76776476 76776829 + 0.833333 NA intron (NM_014909, intron 5 of 6) intron (NM_014909, intron 5 of 6) 10072 NR_104184 100506603 Hs.673984 NR_104183 ENSG00000258301 VASH1-AS1 - VASH1 antisense RNA 1 ncRNA 232-33 chr8 70831695 70832177 + 0.833333 NA Intergenic Intergenic 162597 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 155.5-11 chr13 48818829 48819116 + 0.833333 NA Intergenic Intergenic -156940 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 198.333-8 chr12 57559574 57559873 + 0.833333 NA intron (NM_001354705, intron 1 of 25) L1ME3|LINE|L1 9679 NM_004984 3798 Hs.151219 NM_004984 ENSG00000155980 KIF5A ALS25|D12S1889|MY050|NEIMY|NKHC|SPG10 kinesin family member 5A protein-coding 277.167-7 chr5 122863111 122863737 + 0.833333 NA intron (NM_014035, intron 1 of 6) L2a|LINE|L2 17811 NM_014035 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 193.5-38 chr4 52203386 52203758 + 0.833333 NA Intergenic Intergenic 152268 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 123.167-19 chr11 95254165 95254557 + 0.833333 NA Intergenic Intergenic -21886 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 120.5-70 chr5 26828547 26828824 + 0.833333 NA Intergenic Intergenic 209901 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 268-19 chr6 137661031 137661813 + 0.833333 NA Intergenic AluSc|SINE|Alu -4224 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 212.5-26 chr6 116514141 116514573 + 0.833333 NA intron (NM_153711, intron 1 of 1) intron (NM_153711, intron 1 of 1) 2718 NM_153711 254228 Hs.105081 NM_153711 ENSG00000178033 CALHM5 C6orf188|FAM26E|dJ493F7.3 calcium homeostasis modulator family member 5 protein-coding 265.667-23 chr8 120871930 120872372 + 0.833333 NA Intergenic L1ME3|LINE|L1 -60105 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 231-18 chr3 83987379 83987829 + 0.833333 NA Intergenic L1ME2|LINE|L1 881971 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 175.667-44 chr4 32508722 32509023 + 0.833333 NA Intergenic Charlie1|DNA|hAT-Charlie 157834 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 176.5-41 chr3 26490166 26490577 + 0.833333 NA Intergenic Intergenic -132435 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 228.833-11 chr2 150377547 150377901 + 0.833333 NA Intergenic Intergenic 109971 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 257.167-10 chr22 22997136 22997710 + 0.833333 NA Intergenic L1M2|LINE|L1 -73096 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 181.167-14 chr2 149316970 149317428 + 0.833333 NA Intergenic Intergenic -12786 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 242.833-3 chr15 90787740 90788206 + 0.833333 NA intron (NM_001287246, intron 15 of 22) L1M6|LINE|L1 70627 NM_000057 641 Hs.725208 NM_000057 ENSG00000197299 BLM BS|MGRISCE1|RECQ2|RECQL2|RECQL3 BLM RecQ like helicase protein-coding 144.667-70 chr4 79919170 79919404 + 0.833333 NA intron (NM_001286781, intron 16 of 16) L1MC5a|LINE|L1 91816 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 144.167-80 chr9 27209211 27209571 + 0.833333 NA intron (NM_001290077, intron 15 of 21) intron (NM_001290077, intron 15 of 21) 73402 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 228.833 chr1 115559594 115560166 + 0.833333 NA Intergenic MLT2B1|LTR|ERVL -82090 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 192.167-16 chr18 47624502 47624951 + 0.833333 NA Intergenic AluSz|SINE|Alu 244230 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 185.667-53 chr7 51987525 51987773 + 0.833333 NA Intergenic Intergenic -594393 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 130.833-68 chr8 34395932 34396353 + 0.833333 NA Intergenic UCON49|LINE|L2 -387779 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 136.5-42 chr18 22902151 22902348 + 0.833333 NA Intergenic LTR85a|LTR|Gypsy? -31079 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 148.167-16 chr11 115181659 115181862 + 0.833333 NA intron (NM_001098517, intron 7 of 8) intron (NM_001098517, intron 7 of 8) -151817 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 162.167-9 chr11 68495622 68495869 + 0.833333 NA intron (NM_001352362, intron 2 of 24) L1MB8|LINE|L1 34993 NM_001352369 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 132.5-80 chr5 147370215 147370453 + 0.833333 NA intron (NM_001112724, intron 8 of 12) intron (NM_001112724, intron 8 of 12) 83358 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 166-30 chr18 68212125 68212493 + 0.833333 NA Intergenic Intergenic -397487 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 145.667-8 chr1 204866817 204867057 + 0.833333 NA intron (NM_001160332, intron 1 of 27) L2b|LINE|L2 38283 NM_001160332 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 177-39 chr2 190591280 190591586 + 0.833333 NA Intergenic Intergenic -56711 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 155.333-47 chr2 45315618 45315936 + 0.833333 NA Intergenic Intergenic -60836 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 151.833-33 chr2 229917634 229917892 + 0.833333 NA intron (NM_001348325, intron 1 of 42) AluJr|SINE|Alu 3916 NM_001348334 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 185.167-15 chr15 59933224 59933550 + 0.833333 NA Intergenic Intergenic -70924 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 203.667-13 chr18 13114755 13115349 + 0.833333 NA intron (NM_032142, intron 42 of 44) intron (NM_032142, intron 42 of 44) -103708 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 199.667-32 chr2 191492804 191493126 + 0.833333 NA Intergenic L1ME1|LINE|L1 -185107 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 218.167-16 chr21 30008980 30009422 + 0.833333 NA Intergenic Intergenic -69149 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 183-52 chr7 111332297 111332652 + 0.833333 NA intron (NM_032549, intron 3 of 5) L1MC4|LINE|L1 229817 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 191.667-14 chr12 27039610 27039879 + 0.833333 NA Intergenic AluSc8|SINE|Alu 17186 NM_004264 9412 Hs.286145 NM_004264 ENSG00000152944 MED21 SRB7|SURB7|hSrb7 mediator complex subunit 21 protein-coding 133.333-79 chr3 107620834 107621122 + 0.833333 NA intron (NM_001276286, intron 2 of 16) L1MD1|LINE|L1 98016 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 127-58 chr20 52506120 52506312 + 0.833333 NA Intergenic L1MA3|LINE|L1 -114622 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 183.5-45 chr3 154617662 154618175 + 0.833333 NA Intergenic L1MA5A|LINE|L1 -187728 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 448.333-3 chr4 16619474 16620044 + 0.833333 NA intron (NM_001304435, intron 2 of 7) intron (NM_001304435, intron 2 of 7) 278886 NM_001290 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 139.5-69 chr7 104178804 104179066 + 0.833333 NA intron (NM_181747, intron 8 of 8) MER101-int|LTR|ERV1 29078 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 139.667-42 chr18 5554885 5555147 + 0.833333 NA intron (NM_001281535, intron 3 of 21) intron (NM_001281535, intron 3 of 21) -10677 NM_001330557 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 229-14 chr14 64002021 64002717 + 0.833333 NA intron (NM_015180, intron 29 of 114) intron (NM_015180, intron 29 of 114) 92756 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 261.333-6 chr2 11260536 11261017 + 0.833333 NA intron (NM_001321643, intron 3 of 32) intron (NM_001321643, intron 3 of 32) 83860 NM_004850 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 267.333-6 chr11 110904663 110905008 + 0.833333 NA Intergenic Intergenic -191646 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 217.833-12 chr2 42307595 42308056 + 0.833333 NA intron (NM_001145076, intron 16 of 21) AluSq2|SINE|Alu 52213 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 239.5-11 chr2 23178501 23178840 + 0.833333 NA Intergenic L1ME1|LINE|L1 -206509 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 284.167-9 chr2 23231446 23231816 + 0.833333 NA Intergenic Intergenic -153548 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 204-19 chr2 135371566 135371919 + 0.833333 NA intron (NM_001286569, intron 3 of 21) intron (NM_001286569, intron 3 of 21) 158843 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 273.5 chr10 82406099 82406548 + 0.833333 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -173403 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 135.5-51 chr20 60119013 60119307 + 0.833333 NA Intergenic Intergenic -19332 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 169.333-75 chr9 33311292 33311558 + 0.833333 NA intron (NM_002504, intron 6 of 23) intron (NM_002504, intron 6 of 23) 20909 NM_001318758 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 223-19 chr3 191580668 191581199 + 0.833333 NA intron (NR_120606, intron 6 of 6) intron (NR_120606, intron 6 of 6) 119770 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 187.667-18 chr14 37246249 37246593 + 0.833333 NA intron (NM_138731, intron 2 of 13) intron (NM_138731, intron 2 of 13) 48484 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 144.667-55 chr2 155319943 155320266 + 0.833333 NA Intergenic Intergenic 621409 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 280.333-9 chr16 78559152 78559774 + 0.833333 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 459809 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 114.833-10 chr10 125375757 125376101 + 0.833333 NA Intergenic Intergenic -198442 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 174.333-29 chr2 58920355 58920682 + 0.833333 NA intron (NR_033873, intron 4 of 13) intron (NR_033873, intron 4 of 13) -297190 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 178-18 chr14 72517554 72518013 + 0.833333 NA TTS (NR_106994) TTS (NR_106994) 963 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 155.833-56 chr5 74628481 74628882 + 0.833333 NA non-coding (NR_046318, exon 2 of 2) non-coding (NR_046318, exon 2 of 2) -11342 NM_001292004 3074 Hs.69293 NM_000521 ENSG00000049860 HEXB ENC-1AS|HEL-248|HEL-S-111 hexosaminidase subunit beta protein-coding 185.5-21 chr2 112340375 112340615 + 0.833333 NA TTS (NM_198581) TTS (NM_198581) 64898 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 216.5-4 chr10 72327469 72327893 + 0.833333 NA Intergenic AluSc|SINE|Alu 27238 NM_001002762 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 163.167-40 chr6 94861164 94861455 + 0.833333 NA Intergenic L1MC5a|LINE|L1 716142 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 260.833-7 chr15 83722531 83723187 + 0.833333 NA intron (NM_207517, intron 3 of 29) intron (NM_207517, intron 3 of 29) 68736 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 273.5-13 chr2 62903750 62904224 + 0.833333 NA intron (NM_001142615, intron 10 of 22) intron (NM_001142615, intron 10 of 22) 143724 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 152.833-24 chr19 14849758 14850032 + 0.833333 NA Intergenic L1MA8|LINE|L1 -8018 NM_001005190 390892 Hs.553776 NM_001005190 ENSG00000127515 OR7A10 BC85395_3|OR19-18 olfactory receptor family 7 subfamily A member 10 protein-coding 154.5-35 chr2 46108696 46108984 + 0.833333 NA intron (NM_005400, intron 11 of 14) L1MC3|LINE|L1 -188567 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 140.5-12 chr11 22856267 22856519 + 0.833333 NA intron (NM_001195637, intron 3 of 3) L1MCa|LINE|L1 4081 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 214.167-17 chr3 13127899 13128279 + 0.833333 NA Intergenic L1ME1|LINE|L1 -54660 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 278-3 chr11 43376256 43376759 + 0.833333 NA intron (NM_001307943, intron 1 of 19) intron (NM_001307943, intron 1 of 19) 17587 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 147.833-59 chr6 117985965 117986229 + 0.833333 NA intron (NM_001029858, intron 1 of 7) MLT1O|LTR|ERVL-MaLR 78833 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 145.833-32 chr17 71823414 71823645 + 0.833333 NA Intergenic Intergenic 202450 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 149.5-65 chr8 62347654 62348003 + 0.833333 NA intron (NM_001304533, intron 1 of 6) L3|LINE|CR1 98974 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 154.167-6 chr10 31043966 31044211 + 0.833333 NA Intergenic Intergenic -12151 NM_001143770 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 183-43 chr4 77873130 77873598 + 0.833333 NA intron (NM_020236, intron 2 of 8) MIRb|SINE|MIR 10534 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 206.833-28 chr8 86060825 86061228 + 0.833333 NA intron (NM_033126, intron 2 of 2) LTR16A2|LTR|ERVL 8642 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 294.5-2 chr11 94252718 94253166 + 0.833333 NA Intergenic L1PA5|LINE|L1 -52695 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 129.667-22 chr12 41147069 41147260 + 0.833333 NA Intergenic MIRb|SINE|MIR -41156 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 209.5-7 chr12 5871410 5871808 + 0.833333 NA intron (NM_001278596, intron 3 of 25) MER1B|DNA|hAT-Charlie 73650 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 211.167-27 chr5 114408307 114408708 + 0.833333 NA intron (NM_021614, intron 3 of 7) intron (NM_021614, intron 3 of 7) -25004 NM_170775 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 166.833-49 chrX 54588027 54588351 + 0.833333 NA Intergenic L1MD1|LINE|L1 57970 NM_001184819 54552 Hs.654677 NM_019067 ENSG00000130119 GNL3L GNL3B G protein nucleolar 3 like protein-coding 239.5-25 chr8 117502345 117502783 + 0.833333 NA Intergenic Intergenic -18149 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 149.833-14 chr2 17136024 17136276 + 0.833333 NA Intergenic Intergenic 382290 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 153.833-35 chr2 203798583 203798827 + 0.833333 NA Intergenic L1MB7|LINE|L1 -69066 NM_005214 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 253.5 chr1 80741563 80742025 + 0.833333 NA Intergenic Intergenic 100507 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 128-46 chr2 56502901 56503220 + 0.833333 NA Intergenic Intergenic -317290 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 115.333-65 chr21 21317313 21317480 + 0.833333 NA intron (NM_001352592, intron 6 of 18) intron (NM_001352592, intron 6 of 18) 170234 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 162-70 chr8 87291510 87291816 + 0.833333 NA intron (NM_173538, intron 8 of 10) intron (NM_173538, intron 8 of 10) 425248 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 220.5-12 chr16 74138077 74138580 + 0.833333 NA Intergenic AluSx|SINE|Alu 77193 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 178.833-39 chr9 28354839 28355173 + 0.833333 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 364299 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 141.333-7 chr1 226244509 226244774 + 0.833333 NA intron (NM_001366237, intron 10 of 13) intron (NM_001366237, intron 10 of 13) 20977 NM_001282402 83881 Hs.282079 NM_031944 ENSG00000185155 MIXL1 MILD1|MIX|MIXL Mix paired-like homeobox protein-coding 119.167-36 chr18 64785514 64785683 + 0.833333 NA Intergenic L2a|LINE|L2 -525543 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 177.167-32 chr4 12740866 12741151 + 0.833333 NA Intergenic MER30|DNA|hAT-Charlie 517557 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 177.833-40 chr6 95373317 95373911 + 0.833333 NA Intergenic MLT2B4|LTR|ERVL 203837 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 197.5-30 chr2 174464229 174464506 + 0.833333 NA intron (NM_001267051, intron 6 of 14) MER113B|DNA|hAT-Charlie 22662 NM_001033045 151556 Hs.516604 NM_152529 ENSG00000163328 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 158.833-24 chr16 20068537 20068782 + 0.833333 NA intron (NM_001002911, intron 1 of 1) L1MD|LINE|L1 5119 NM_001002911 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 191.667-5 chr10 9845628 9846001 + 0.833333 NA Intergenic MLT1A|LTR|ERVL-MaLR -212908 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 165.5-41 chr3 88181709 88182047 + 0.833333 NA Intergenic Charlie2b|DNA|hAT-Charlie 31919 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 184.333-41 chr3 191341700 191341992 + 0.833333 NA intron (NM_178335, intron 1 of 11) intron (NM_178335, intron 1 of 11) -11310 NM_198152 257313 Hs.518492 NM_198152 ENSG00000188958 UTS2B U2B|URP|UTS2D urotensin 2B protein-coding 155.833-62 chr6 54311405 54311605 + 0.833333 NA intron (NM_014464, intron 1 of 10) L1ME5|LINE|L1 3064 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 176-3 chr1 81469792 81470073 + 0.833333 NA intron (NM_001366008, intron 2 of 26) intron (NM_001366008, intron 2 of 26) 87770 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 241.5-13 chr2 68342524 68343013 + 0.833333 NA Intergenic L1ME4b|LINE|L1 -22514 NM_002664 5341 Hs.468840 NM_002664 ENSG00000115956 PLEK P47 pleckstrin protein-coding 190.667-25 chr2 202749059 202749402 + 0.833333 NA intron (NM_173511, intron 4 of 7) L1ME4a|LINE|L1 80004 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 179.833-35 chr9 37278398 37278676 + 0.833333 NA intron (NM_001289120, intron 2 of 8) L1MEf|LINE|L1 -144159 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 203.667-6 chr10 81804288 81804729 + 0.833333 NA Intergenic Intergenic -70686 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 174.5-53 chr8 120746015 120746440 + 0.833333 NA intron (NM_021021, intron 1 of 6) Tigger2a|DNA|TcMar-Tigger -15026 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 204.833-5 chr10 51100841 51101229 + 0.833333 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 26548 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 198.5-44 chrX 97255333 97255662 + 0.833333 NA intron (NM_007309, intron 23 of 26) L2c|LINE|L2 309038 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 247.667-5 chr10 77239752 77240159 + 0.833333 NA intron (NM_001322838, intron 3 of 29) intron (NM_001322838, intron 3 of 29) 99124 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 131.167-60 chr5 8719833 8720100 + 0.833333 NA Intergenic Intergenic -119766 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 183.333-59 chr8 82224829 82225356 + 0.833333 NA Intergenic Intergenic -382806 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 151.5-19 chr12 94976115 94976337 + 0.833333 NA intron (NM_001258338, intron 2 of 2) MIR|SINE|MIR 27471 NM_018838 55967 Hs.506374 NM_018838 ENSG00000184752 NDUFA12 B17.2|DAP13|MC1DN23 NADH:ubiquinone oxidoreductase subunit A12 protein-coding 158 chr1 14728437 14728742 + 0.833333 NA intron (NM_201628, intron 1 of 14) MER5B|DNA|hAT-Charlie 129872 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 155.167-50 chr8 141838899 141839253 + 0.833333 NA Intergenic L1MEf|LINE|L1 -52763 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 185.333-35 chr20 22607854 22608291 + 0.833333 NA promoter-TSS (NR_109883) promoter-TSS (NR_109883) -555 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LNCNEF LINC01384|lncRNA-NEF lncRNA neighboring enhancer of FOXA2 ncRNA 214.667-29 chr5 61248824 61249452 + 0.833333 NA Intergenic L1MEd|LINE|L1 15791 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 234.5-28 chr6 134423334 134423806 + 0.833333 NA Intergenic Intergenic -14146 NR_038216 154092 Hs.223718 NR_038216 LINC01010 - long intergenic non-protein coding RNA 1010 ncRNA 178.333-51 chr8 108419273 108419758 + 0.833333 NA Intergenic Intergenic -24068 NM_001329493 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 187-16 chr16 23560695 23560986 + 0.833333 NA intron (NM_019116, intron 3 of 6) intron (NM_019116, intron 3 of 6) 3113 NM_019116 56061 Hs.3459 NM_019116 ENSG00000103353 UBFD1 UBPH ubiquitin family domain containing 1 protein-coding 204-39 chrX 114366143 114366615 + 0.833333 NA Intergenic L1M5|LINE|L1 -217699 NM_000868 3358 Hs.149037 NM_000868 ENSG00000147246 HTR2C 5-HT1C|5-HT2C|5-HTR2C|5HTR2C|HTR1C 5-hydroxytryptamine receptor 2C protein-coding 191.833-6 chr14 46079755 46080045 + 0.833333 NA intron (NR_102702, intron 1 of 3) (AGAT)n|Simple_repeat|Simple_repeat 15741 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 149.833-5 chr10 62044153 62044480 + 0.833333 NA intron (NM_032199, intron 4 of 9) intron (NM_032199, intron 4 of 9) -5041 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 168.167-39 chr3 105144895 105145247 + 0.833333 NA Intergenic Intergenic -221642 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 324.333-6 chr7 48519663 48520128 + 0.833333 NA intron (NM_152701, intron 52 of 61) intron (NM_152701, intron 52 of 61) 348437 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 274.333-5 chr12 95139519 95140053 + 0.833333 NA intron (NM_018351, intron 6 of 20) AluSx1|SINE|Alu -66168 NM_001032287 7181 Hs.108301 NM_003297 ENSG00000120798 NR2C1 TR2 nuclear receptor subfamily 2 group C member 1 protein-coding 131.833-22 chr16 26274350 26274642 + 0.833333 NA Intergenic L2b|LINE|L2 249259 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 178.333-46 chr7 47607851 47608151 + 0.833333 NA Intergenic Intergenic -13938 NR_108090 101929086 Hs.563487 NR_108090 ENSG00000236078 LINC01447 - long intergenic non-protein coding RNA 1447 ncRNA 166-35 chr20 18899087 18899424 + 0.833333 NA Intergenic L1MC4|LINE|L1 -69052 NR_161342 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 227.167-17 chr2 59730166 59730477 + 0.833333 NA Intergenic Intergenic 512613 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 133-49 chr2 149201126 149201389 + 0.833333 NA intron (NM_001317002, intron 4 of 7) intron (NM_001317002, intron 4 of 7) 83083 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 237-3 chr1 169855240 169855726 + 0.833333 NA intron (NM_020423, intron 11 of 12) MER103C|DNA|hAT-Charlie 38413 NM_020423 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 270.833-4 chr10 78037625 78038093 + 0.833333 NA intron (NM_001142285, intron 4 of 4) intron (NM_001142285, intron 4 of 4) 3996 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 118.667-14 chr10 27613680 27613919 + 0.833333 NA Intergenic Intergenic 109495 NR_046172 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 122.667-79 chr4 63795806 63796031 + 0.833333 NA Intergenic L2a|LINE|L2 613532 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 113.667-4 chr1 115715919 115716103 + 0.833333 NA intron (NM_001232, intron 8 of 10) MIRc|SINE|MIR 52794 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 194.833-6 chr12 12514790 12515141 + 0.833333 NA intron (NM_030640, intron 3 of 6).2 intron (NM_030640, intron 3 of 6).2 47898 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 151.167-31 chr2 183290168 183290486 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR 165884 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 154.5-33 chr19 48259586 48259842 + 0.833333 NA Intergenic LTR13|LTR|ERVK -3768 NM_001351787 22900 Hs.68846 NM_014959 ENSG00000105483 CARD8 CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN caspase recruitment domain family member 8 protein-coding 143.333-51 chr22 23613764 23614060 + 0.833333 NA intron (NM_016449, intron 9 of 11) intron (NM_016449, intron 9 of 11) 18409 NM_016449 51233 Hs.517466 NM_016449 ENSG00000189269 DRICH1 C22orf43|KB-208E9.1 aspartate rich 1 protein-coding 177.167-22 chr20 51475752 51476153 + 0.833333 NA intron (NM_012340, intron 3 of 10) intron (NM_012340, intron 3 of 10) -22975 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 134.833-52 chr5 91974342 91974672 + 0.833333 NA Intergenic Intergenic -591190 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 146.167-43 chr4 72147734 72148233 + 0.833333 NA 3' UTR (NM_004885, exon 4 of 4) 3' UTR (NM_004885, exon 4 of 4) 108851 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 211.833-17 chr3 95310179 95310626 + 0.833333 NA Intergenic Intergenic 372139 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 204-31 chr4 121522374 121522817 + 0.833333 NA Intergenic L2a|LINE|L2 -141577 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 286.167-2 chr12 82975530 82975952 + 0.833333 NA intron (NM_152588, intron 7 of 11) intron (NM_152588, intron 7 of 11) 288586 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 267.167-20 chr9 91347571 91348182 + 0.833333 NA intron (NM_001698, intron 3 of 9) L1PA5|LINE|L1 14048 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 191.333-11 chr14 50632115 50632790 + 0.833333 NA 3' UTR (NM_001127713, exon 14 of 14) 3' UTR (NM_001127713, exon 14 of 14) 35854 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 202.833-20 chr5 32624506 32624868 + 0.833333 NA Intergenic Intergenic 39130 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 regulator of transcription protein-coding 240.5-14 chr4 77076940 77077424 + 0.833333 NA Intergenic L2a|LINE|L2 -1193 NM_006835 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 152.667-6 chr1 114878776 114879001 + 0.833333 NA intron (NM_001282542, intron 12 of 30) intron (NM_001282542, intron 12 of 30) 24025 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 139.833-48 chr20 2449568 2449807 + 0.833333 NA Intergenic L1MD1|LINE|L1 13360 NR_003684 100113378 NR_003684 SNORD119 - small nucleolar RNA, C/D box 119 snoRNA 145.667-44 chr18 67284015 67284379 + 0.833333 NA Intergenic L1MC4|LINE|L1 202613 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 147.333-49 chr22 25479807 25480101 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger 24308 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 234 chr1 44153830 44154241 + 0.833333 NA Intergenic Intergenic -12404 NM_001358438 105378952 NM_001358438 ENSG00000283039 KLF18 - Kruppel like factor 18 protein-coding 222.667-21 chr2 84453334 84453726 + 0.833333 NA intron (NM_003849, intron 1 of 8) AluSz|SINE|Alu 5750 NM_003849 8802 Hs.270428 NM_003849 ENSG00000163541 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase alpha subunit protein-coding 124.667-82 chr3 172450854 172451045 + 0.833333 NA Intergenic Intergenic -2493 NM_198407 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 174.167-35 chr6 141771092 141771354 + 0.833333 NA Intergenic L1M1|LINE|L1 317576 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 144.333-60 chr3 79425922 79426231 + 0.833333 NA intron (NR_110133, intron 1 of 2) intron (NR_110133, intron 1 of 2) 14349 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 164.167-53 chr5 110924464 110924768 + 0.833333 NA Intergenic Intergenic -145464 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 145-69 chr5 84241369 84241568 + 0.833333 NA intron (NM_005711, intron 2 of 10) intron (NM_005711, intron 2 of 10) 143399 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 210.5-28 chr20 38991409 38991911 + 0.833333 NA intron (NM_021931, intron 6 of 21) intron (NM_021931, intron 6 of 21) 29316 NR_033905 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 113.167-47 chr3 24965653 24965903 + 0.833333 NA intron (NM_001290216, intron 2 of 10) MIRc|SINE|MIR 136455 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 146.333-15 chr11 26475739 26476152 + 0.833333 NA intron (NM_001313727, intron 1 of 23) MER5A|DNA|hAT-Charlie 2043 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 221.167-17 chr2 82293737 82294257 + 0.833333 NA Intergenic Intergenic -562806 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 158-37 chr4 124878013 124878247 + 0.833333 NA Intergenic Intergenic -165398 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 227.833-22 chr6 68687327 68687672 + 0.833333 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 52217 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 122.833-25 chr14 63382186 63382394 + 0.833333 NA intron (NR_104104, intron 11 of 12) intron (NR_104104, intron 11 of 12) -63355 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 232.667-32 chr8 139361163 139361558 + 0.833333 NA Intergenic MIRc|SINE|MIR 341763 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 152.667-7 chr1 177877777 177877989 + 0.833333 NA Intergenic MIRb|SINE|MIR 92039 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 186.167-26 chr3 29818059 29818391 + 0.833333 NA intron (NM_001003792, intron 6 of 13) intron (NM_001003792, intron 6 of 13) 115931 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 270.667-10 chr2 148452341 148453005 + 0.833333 NA intron (NM_018328, intron 5 of 14) intron (NM_018328, intron 5 of 14) -192078 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 148.5-43 chr20 767979 768184 + 0.833333 NA intron (NM_001370086, intron 2 of 5) MIR|SINE|MIR 419 NM_033409 113278 Hs.283865 NM_033409 ENSG00000101276 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 member 3 protein-coding 136-52 chr3 152253061 152253262 + 0.833333 NA Intergenic L2a|LINE|L2 -15768 NM_207292 4154 Hs.201858 NM_021038 ENSG00000152601 MBNL1 EXP|MBNL muscleblind like splicing regulator 1 protein-coding 154.5-67 chr7 45009906 45010157 + 0.833333 NA intron (NM_001363459, intron 1 of 9) AluJb|SINE|Alu 9830 NM_001363458 83605 Hs.148272 NM_031443 ENSG00000136280 CCM2 C7orf22|OSM|PP10187 CCM2 scaffold protein protein-coding 171-43 chr5 12950278 12950751 + 0.833333 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 82372 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 177.5-18 chr12 1274597 1274880 + 0.833333 NA intron (NR_027948, intron 14 of 19) AluSg|SINE|Alu -225753 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 161.833-41 chr6 132647103 132647365 + 0.833333 NA Intergenic Intergenic -1208 NM_138327 134864 Hs.375030 NM_138327 ENSG00000146399 TAAR1 TA1|TAR1|TRAR1 trace amine associated receptor 1 protein-coding 207.667-38 chr5 37405200 37405600 + 0.833333 NA intron (NM_001345998, intron 5 of 17) AluSp|SINE|Alu 26082 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 130.833-67 chr7 93596256 93596428 + 0.833333 NA Intergenic Intergenic -21612 NM_001164737 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 167.333-37 chr2 146596615 146596945 + 0.833333 NA Intergenic Intergenic 9723 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 222.5-35 chr9 87300540 87300882 + 0.833333 NA Intergenic Intergenic 152067 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 154.5-2 chr1 155399387 155399696 + 0.833333 NA intron (NM_018489, intron 6 of 27) AluSx1|SINE|Alu -33639 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 190.833-33 chr4 95323739 95324154 + 0.833333 NA intron (NM_003728, intron 2 of 15) AluSg|SINE|Alu 225027 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 115.333-108 chr9 28643643 28643918 + 0.833333 NA intron (NM_152570, intron 2 of 6) L1MA2|LINE|L1 75525 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 226.167-6 chr11 90260003 90260503 + 0.833333 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 9021 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 119.333-34 chr16 59721034 59721272 + 0.833333 NA Intergenic MLT1H|LTR|ERVL-MaLR 34038 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 152.167-56 chr4 166623774 166624091 + 0.833333 NA Intergenic Intergenic 610494 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 150-51 chr3 98473837 98474146 + 0.833333 NA Intergenic L1PB1|LINE|L1 4511 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 144.833-34 chr2 134078127 134078365 + 0.833333 NA Intergenic Intergenic -41689 NM_001371457 183.833-36 chr6 48352470 48352709 + 0.833333 NA Intergenic Intergenic -283900 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 132.5-83 chr6 105731291 105731725 + 0.833333 NA Intergenic Intergenic -328426 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 180-17 chr17 52262843 52263277 + 0.833333 NA Intergenic L1PB4|LINE|L1 -103043 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 217.833-22 chr7 90907834 90908138 + 0.833333 NA intron (NM_012395, intron 6 of 13) intron (NM_012395, intron 6 of 13) 198170 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 120.833-5 chr10 27751532 27751804 + 0.833333 NA intron (NR_121652, intron 1 of 1) MLT1B|LTR|ERVL-MaLR -5849 NM_173576 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 185.333-45 chr4 71786771 71787329 + 0.833333 NA intron (NM_001204306, intron 1 of 13) MLT1O|LTR|ERVL-MaLR -2971 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 158-26 chr2 158651942 158652287 + 0.833333 NA intron (NM_001005476, intron 11 of 20) MER33|DNA|hAT-Charlie 82888 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 148-16 chr10 72134249 72134605 + 0.833333 NA intron (NM_001369099, intron 6 of 8) AluJr|SINE|Alu -45395 NM_001134434 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 247.833 chr1 107684804 107685186 + 0.833333 NA intron (NM_006113, intron 18 of 26) intron (NM_006113, intron 18 of 26) 3504 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 143.167-30 chr2 37849638 37849983 + 0.833333 NA intron (NR_110012, intron 2 of 3) MIRb|SINE|MIR -20099 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 212-16 chr2 43783375 43783785 + 0.833333 NA intron (NM_016008, intron 3 of 12) intron (NM_016008, intron 3 of 12) 9541 NM_001348912 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 134-26 chr12 4648942 4649115 + 0.833333 NA promoter-TSS (NM_005002) promoter-TSS (NM_005002) 19 NM_006422 10566 Hs.98397 NM_006422 ENSG00000111254 AKAP3 AKAP 110|AKAP110|CT82|FSP95|HEL159|PRKA3|SOB1 A-kinase anchoring protein 3 protein-coding 121.167-33 chr18 2088095 2088306 + 0.833333 NA Intergenic Intergenic 483305 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 154.5-34 chr2 40289178 40289507 + 0.833333 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 140962 NM_021097 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 220.833-4 chr12 64040643 64040984 + 0.833333 NA intron (NM_001346201, intron 4 of 21) intron (NM_001346201, intron 4 of 21) 181483 NM_001300941 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 120.833-69 chr8 109129852 109130091 + 0.833333 NA Intergenic MamGypsy2-I|LTR|Gypsy 43343 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 122.167-71 chr8 79762438 79762662 + 0.833333 NA Intergenic Intergenic 3925 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 222.333-6 chr12 59921518 59922056 + 0.833333 NA Intergenic L1MC5a|LINE|L1 232417 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 161.333-30 chr16 57675086 57675401 + 0.833333 NA intron (NM_001308360, intron 2 of 10) SVA_A|Retroposon|SVA 6937 NM_170776 222487 Hs.383403 NM_170776 ENSG00000182885 ADGRG3 GPR97|PB99|PGR26 adhesion G protein-coupled receptor G3 protein-coding 211.833-20 chr4 36490795 36491236 + 0.833333 NA Intergenic MER46C|DNA|TcMar-Tigger -64587 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 312.667-4 chr2 214160808 214161268 + 0.833333 NA intron (NR_047660, intron 14 of 14) L1PA10|LINE|L1 -250016 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 226.5-13 chr14 57263017 57263420 + 0.833333 NA intron (NM_006544, intron 1 of 17) AluJb|SINE|Alu 5687 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 120.667-17 chr11 29514385 29514677 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -79882 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 272.167-19 chr2 33613198 33613869 + 0.833333 NA Intergenic HUERS-P1-int|LTR|ERV1 -14171 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 125.833-93 chr8 121259987 121260195 + 0.833333 NA Intergenic Intergenic -379255 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 240.833 chr1 93181284 93181716 + 0.833333 NA intron (NM_001306076, intron 1 of 28) intron (NM_001306076, intron 1 of 28) 784 NM_001306076 343099 Hs.482873 NM_206886 ENSG00000122483 CCDC18 NY-SAR-41 coiled-coil domain containing 18 protein-coding 117.333-46 chr2 49832703 49833004 + 0.833333 NA Intergenic Intergenic 141350 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 189.167-33 chr3 185881873 185882229 + 0.833333 NA Intergenic Intergenic 55963 NM_004593 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog protein-coding 233.333-12 chr14 90514571 90515018 + 0.833333 NA Intergenic AluJr4|SINE|Alu 2415 NR_135274 105370619 Hs.525530 NR_135274 LOC105370619 - uncharacterized LOC105370619 ncRNA 117.667-41 chr14 55396083 55396238 + 0.833333 NA intron (NM_014924, intron 2 of 9) intron (NM_014924, intron 2 of 9) 15698 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 148.833-34 chr2 220669219 220669510 + 0.833333 NA Intergenic L2|LINE|L2 -762799 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 211.167-10 chr16 88628653 88628999 + 0.833333 NA exon (NM_144604, exon 16 of 18) exon (NM_144604, exon 16 of 18) -9746 NM_013278 27189 Hs.278911 NM_013278 ENSG00000124391 IL17C CX2|IL-17C interleukin 17C protein-coding 188.667-47 chr5 92181762 92182047 + 0.833333 NA Intergenic Intergenic -798587 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 164-7 chr10 95646310 95646628 + 0.833333 NA intron (NM_001323414, intron 2 of 17) intron (NM_001323414, intron 2 of 17) 10242 NM_001323416 5832 Hs.500645 NM_002860 ENSG00000059573 ALDH18A1 ADCL3|ARCL3A|GSAS|P5CS|PYCS|SPG9|SPG9A|SPG9B aldehyde dehydrogenase 18 family member A1 protein-coding 200.5-35 chr4 184170829 184171245 + 0.833333 NA intron (NM_153343, intron 1 of 7) MLT1G1|LTR|ERVL-MaLR 46836 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 227.333-29 chr4 82810136 82810470 + 0.833333 NA Intergenic Intergenic -11446 NM_024906 79966 Hs.379191 NM_024906 ENSG00000145284 SCD5 ACOD4|FADS4|HSCD5|SCD2|SCD4 stearoyl-CoA desaturase 5 protein-coding 185.667-35 chr4 61342067 61342326 + 0.833333 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 140024 NM_001371342 285.5 chr1 224157266 224157802 + 0.833333 NA exon (NM_015176, exon 5 of 5) exon (NM_015176, exon 5 of 5) -25706 NM_003676 8560 Hs.299878 NM_003676 ENSG00000143753 DEGS1 DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD delta 4-desaturase, sphingolipid 1 protein-coding 180.167-40 chr4 38981567 38981883 + 0.833333 NA intron (NM_024943, intron 5 of 6) MIRb|SINE|MIR 50684 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 261.333-14 chr4 55277050 55277440 + 0.833333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -68997 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 159.167-61 chr7 52716172 52716584 + 0.833333 NA Intergenic Intergenic -319255 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 115.167-21 chr10 91859636 91859787 + 0.833333 NA intron (NM_025235, intron 25 of 26) intron (NM_025235, intron 25 of 26) 49775 NM_152429 143282 Hs.466120 NM_152429 ENSG00000174721 FGFBP3 C10orf13|FGF-BP3 fibroblast growth factor binding protein 3 protein-coding 179.5-20 chr2 221314133 221314503 + 0.833333 NA Intergenic L2a|LINE|L2 257986 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 156.167-27 chr15 58932455 58932755 + 0.833333 NA intron (NR_135042, intron 1 of 18) intron (NR_135042, intron 1 of 18) 1074 NR_135043 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 144.667-54 chr2 119675595 119675892 + 0.833333 NA Intergenic Intergenic -3424 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 265.667-15 chr4 71912488 71913115 + 0.833333 NA Intergenic Intergenic -107281 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 154.833-14 chr12 3871266 3871597 + 0.833333 NA intron (NM_001286522, intron 1 of 7) Tigger3a|DNA|TcMar-Tigger 1968 NM_001286522 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 260.333-19 chr8 23280172 23280536 + 0.833333 NA Intergenic L1MDa|LINE|L1 -7738 NM_001301650 203069 Hs.458644 NM_001136108 ENSG00000104679 R3HCC1 - R3H domain and coiled-coil containing 1 protein-coding 143.667-31 chr12 109213073 109213413 + 0.833333 NA intron (NM_001093, intron 22 of 52) AluSz|SINE|Alu 96041 NM_213596 121643 Hs.528316 NM_213596 ENSG00000139445 FOXN4 - forkhead box N4 protein-coding 152.167-34 chr2 232845060 232845446 + 0.833333 NA intron (NR_103492, intron 24 of 26) MIRb|SINE|MIR -23761 NM_001346122 389084 Hs.657509 NM_206895 ENSG00000182600 SNORC ASCL830|C2orf82|UNQ830 secondary ossification center associated regulator of chondrocyte maturation protein-coding 156.667-85 chr8 126851813 126852010 + 0.833333 NA Intergenic Intergenic -161243 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 216.167-30 chr8 120178881 120179376 + 0.833333 NA intron (NM_021110, intron 5 of 47) L1PA7|LINE|L1 54026 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 169-3 chr1 117689332 117689749 + 0.833333 NA Intergenic L1MA4A|LINE|L1 83492 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 270.833-7 chr17 39424772 39425195 + 0.833333 NA intron (NM_004774, intron 10 of 16) AluY|SINE|Alu -22427 NM_001370209 84961 Hs.462946 NM_032875 ENSG00000108306 FBXL20 Fbl2|Fbl20 F-box and leucine rich repeat protein 20 protein-coding 162.667-68 chr5 157153591 157154136 + 0.833333 NA Intergenic L1MDa|LINE|L1 -10998 NM_004270 9443 Hs.279902 NM_004270 ENSG00000155868 MED7 ARC34|CRSP33|CRSP9 mediator complex subunit 7 protein-coding 183.667-64 chr5 55767043 55767528 + 0.833333 NA intron (NM_001166534, intron 1 of 14) AluSx|SINE|Alu 400 NM_001166534 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 258.667-7 chr14 47867245 47867776 + 0.833333 NA Intergenic L1ME2|LINE|L1 -72496 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 172.333-51 chr3 110327415 110327724 + 0.833333 NA Intergenic L1PREC2|LINE|L1 724741 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 209.167-22 chr21 21988997 21989325 + 0.833333 NA Intergenic L1MEc|LINE|L1 109298 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 164.333-80 chr8 42668579 42668968 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -28593 NM_000749 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 113.5-52 chr2 209918782 209918988 + 0.833333 NA intron (NM_032504, intron 32 of 63) intron (NM_032504, intron 32 of 63) -83680 NM_001278286 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 193.5-30 chr2 163543569 163543993 + 0.833333 NA Intergenic AluY|SINE|Alu 192227 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 193.667-35 chr3 70205204 70205535 + 0.833333 NA intron (NM_001364677, intron 3 of 3) MER102c|DNA|hAT-Charlie 107269 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 199.167-33 chr5 27153671 27154096 + 0.833333 NA Intergenic MER101-int|LTR|ERV1 -115297 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 190.5-3 chr1 115801243 115801559 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -32596 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 173.667-35 chr22 32220215 32220792 + 0.833333 NA intron (NM_014227, intron 14 of 14) intron (NM_014227, intron 14 of 14) 15388 NR_149072 110806273 Hs.382171 NR_149072 ENSG00000242082 SLC5A4-AS1 - SLC5A4 antisense RNA 1 ncRNA 149.167-65 chr8 115733811 115734196 + 0.833333 NA Intergenic Intergenic -65028 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 153.667-34 chr19 28191206 28191560 + 0.833333 NA Intergenic AluSx1|SINE|Alu -397443 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 324.5-3 chr4 41635114 41635854 + 0.833333 NA intron (NM_001330672, intron 13 of 31) AluSx1|SINE|Alu 22582 NM_001330983 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 151.333 chr1 118451947 118452231 + 0.833333 NA Intergenic L1ME3Cz|LINE|L1 -266861 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 276.167-7 chr21 29041104 29041803 + 0.833333 NA intron (NM_001032410, intron 11 of 18) intron (NM_001032410, intron 11 of 18) 16785 NM_006447 10600 Hs.99819 NM_006447 ENSG00000156256 USP16 UBP-M|UBPM ubiquitin specific peptidase 16 protein-coding 200.833-30 chr6 146537279 146537669 + 0.833333 NA Intergenic L1MC3|LINE|L1 -6359 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 154.333-14 chr11 10719575 10719859 + 0.833333 NA Intergenic Intergenic -25729 NM_130385 10335 Hs.501898 NM_130385 ENSG00000072952 MRVI1 IRAG|JAW1L murine retrovirus integration site 1 homolog protein-coding 247.5-5 chr1 187613393 187613950 + 0.833333 NA Intergenic Intergenic 170043 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 166.667-12 chr12 29203264 29203687 + 0.833333 NA intron (NM_001271783, intron 1 of 11) intron (NM_001271783, intron 1 of 11) -20191 NM_001271784 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 190.167-36 chr4 60924435 60925155 + 0.833333 NA Intergenic MIR|SINE|MIR 2176 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 189-38 chr4 125952459 125953153 + 0.833333 NA Intergenic Intergenic 445547 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 127-34 chr14 82842687 82842953 + 0.833333 NA Intergenic Intergenic 200188 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 201.167-18 chr22 24360389 24360833 + 0.833333 NA intron (NM_015330, intron 11 of 16) intron (NM_015330, intron 11 of 16) 18503 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 256.667-10 chr13 77465230 77465665 + 0.833333 NA Intergenic AluSq|SINE|Alu -70227 NM_001160706 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 236.667-26 chr4 42649289 42649813 + 0.833333 NA intron (NM_001105529, intron 1 of 35) intron (NM_001105529, intron 1 of 35) 7554 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 194.5-29 chr4 123141476 123141796 + 0.833333 NA intron (NM_001345856, intron 14 of 15) MER47B|DNA|TcMar-Tigger 218558 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 229.333-11 chr14 60521524 60521936 + 0.833333 NA Intergenic L2b|LINE|L2 12584 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 226.5-15 chr17 72233786 72234170 + 0.833333 NA Intergenic Intergenic -108833 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 156.333-79 chr6 118684496 118684799 + 0.833333 NA intron (NM_001178035, intron 1 of 13) intron (NM_001178035, intron 1 of 13) 25428 NM_001178035 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 130.833-7 chr10 61728281 61728470 + 0.833333 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 65414 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 129-95 chr8 4861765 4861944 + 0.833333 NA intron (NM_033225, intron 1 of 69) L2a|LINE|L2 133060 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 172-27 chr16 61070736 61070964 + 0.833333 NA Intergenic Intergenic -15084 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 209-30 chr22 44848305 44848802 + 0.833333 NA intron (NM_181335, intron 9 of 11) intron (NM_181335, intron 9 of 11) 95995 NM_001017526 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 143-29 chr17 4825217 4825520 + 0.833333 NA Intergenic AluJo|SINE|Alu -7972 NM_001024937 50488 Hs.443417 NM_015716 ENSG00000141503 MINK1 B55|MAP4K6|MINK|YSK2|ZC3 misshapen like kinase 1 protein-coding 130.5-60 chr4 119884133 119884322 + 0.833333 NA Intergenic L1M5|LINE|L1 -55313 NR_121639 100996694 Hs.119926 NR_121639 ENSG00000250392 LINC02502 - long intergenic non-protein coding RNA 2502 ncRNA 236-16 chr3 111089927 111090497 + 0.833333 NA intron (NM_001243288, intron 1 of 8) L1ME3A|LINE|L1 18396 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 263.5-17 chr3 35537074 35537478 + 0.833333 NA Intergenic LTR16A2|LTR|ERVL -102249 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 280-14 chr6 14109941 14110627 + 0.833333 NA Intergenic Intergenic -6972 NM_001251901 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 148.167 chr1 36167750 36168004 + 0.833333 NA intron (NM_018067, intron 1 of 16) intron (NM_018067, intron 1 of 16) 11717 NM_001286366 55700 Hs.356096 NM_018067 ENSG00000116871 MAP7D1 PARCC1|RPRC1 MAP7 domain containing 1 protein-coding 132.833-4 chr1 165554953 165555137 + 0.833333 NA intron (NM_001005214, intron 1 of 1) L2a|LINE|L2 10804 NM_001005214 440699 Hs.664975 NM_001005214 ENSG00000162763 LRRC52 - leucine rich repeat containing 52 protein-coding 153.167-6 chr10 71047602 71047873 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 108684 NR_134314 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 172-56 chr5 166249591 166249875 + 0.833333 NA Intergenic Intergenic 676637 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 168.667-71 chr6 168962366 168962669 + 0.833333 NA non-coding (NR_136248, exon 2 of 2) non-coding (NR_136248, exon 2 of 2) 1865 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 155.333-10 chr1 235169077 235169416 + 0.833333 NA intron (NR_135074, intron 24 of 24) AluY|SINE|Alu -7996 NR_144491 23029 Hs.535224 NM_015014 ENSG00000188739 RBM34 - RNA binding motif protein 34 protein-coding 171.333-66 chr8 125567364 125567688 + 0.833333 NA Intergenic L1MB3|LINE|L1 135317 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 211.667-15 chr17 66543956 66544258 + 0.833333 NA intron (NM_002737, intron 3 of 16) AluSz|SINE|Alu -127253 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 168.833-46 chr5 82921845 82922127 + 0.833333 NA Intergenic Intergenic -62150 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 145.833-54 chr3 173668225 173668620 + 0.833333 NA intron (NM_001365928, intron 3 of 6) L2c|LINE|L2 83988 NM_001365933 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 151.333-94 chr8 144889423 144889610 + 0.833333 NA intron (NM_001363100, intron 4 of 5) intron (NM_001363100, intron 4 of 5) 10789 NM_001363103 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 145.167-62 chr6 23294100 23294551 + 0.833333 NA Intergenic Intergenic -576401 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 160.833-46 chr8 133165802 133166117 + 0.833333 NA Intergenic Intergenic -25080 NR_037944 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 199-16 chr3 70845125 70845562 + 0.833333 NA Intergenic L2a|LINE|L2 219581 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 137.167-16 chr12 130672998 130673257 + 0.833333 NA intron (NM_001351226, intron 1 of 21) intron (NM_001351226, intron 1 of 21) -39207 NM_001351228 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 195.667-32 chr5 28040340 28040975 + 0.833333 NA Intergenic Intergenic 247008 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 233.833-17 chr8 109546668 109547163 + 0.833333 NA intron (NM_001278938, intron 1 of 6) L1ME1|LINE|L1 6289 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 133.5-50 chr4 179492773 179493073 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR -1584987 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 207-13 chr14 83172429 83172774 + 0.833333 NA Intergenic Intergenic 529969 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 266.667-19 chr7 8621700 8622136 + 0.833333 NA intron (NM_152745, intron 2 of 2) MIRb|SINE|MIR 188309 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 169-21 chr17 43456388 43456663 + 0.833333 NA Intergenic Intergenic 11719 NR_031751 100313779 NR_031751 ENSG00000284344 MIR2117 - microRNA 2117 ncRNA 198.833-7 chr15 74999821 75000101 + 0.833333 NA intron (NM_001178111, intron 2 of 7) L1ME3G|LINE|L1 4398 NR_033660 192683 Hs.374180 NM_138967 ENSG00000198794 SCAMP5 - secretory carrier membrane protein 5 protein-coding 122-13 chr11 107668626 107668861 + 0.833333 NA Intergenic MIRb|SINE|MIR 43313 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 138.167-8 chr10 75112209 75112545 + 0.833333 NA intron (NM_144660, intron 1 of 4) intron (NM_144660, intron 1 of 4) 721 NM_144660 142891 Hs.744986 NM_144660 ENSG00000156671 SAMD8 HEL-177|SMSr sterile alpha motif domain containing 8 protein-coding 331.667-6 chr8 105817321 105818199 + 0.833333 NA intron (NR_125796, intron 2 of 7) L1MA1|LINE|L1 242743 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 124-103 chr8 139442321 139442605 + 0.833333 NA Intergenic Intergenic 260660 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 225-10 chr11 99628984 99629400 + 0.833333 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 73047 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 219.167-22 chr6 72086632 72087228 + 0.833333 NA intron (NM_001350411, intron 2 of 3) L2|LINE|L2 -125963 NM_001350439 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 182.333-11 chr11 71230823 71231509 + 0.833333 NA Intergenic L1MD1|LINE|L1 -6370 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 182.5-42 chr8 89815175 89815431 + 0.833333 NA Intergenic Intergenic 57487 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 171.667-50 chr3 6382212 6382545 + 0.833333 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 423071 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 262-20 chr5 79086600 79087314 + 0.833333 NA intron (NM_001178005, intron 6 of 6) intron (NM_001178005, intron 6 of 6) 17190 NM_017614 23743 Hs.114172 NM_017614 ENSG00000132840 BHMT2 - betaine--homocysteine S-methyltransferase 2 protein-coding 197.333-52 chr6 71464754 71465132 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL 43916 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 163.833-48 chr6 71869558 71869842 + 0.833333 NA Intergenic MER3|DNA|hAT-Charlie -17003 NM_014989 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 171.167-14 chr11 9546564 9546954 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -26911 NM_003390 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 198.333-28 chr21 37390921 37391312 + 0.833333 NA intron (NM_001347723, intron 1 of 10) L1MD|LINE|L1 23559 NM_101395 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 170.667-34 chr2 85625077 85625434 + 0.833333 NA intron (NR_046347, intron 4 of 12) intron (NR_046347, intron 4 of 12) 9069 NM_001256725 10713 Hs.654745 NM_006590 ENSG00000168883 USP39 65K|CGI-21|HSPC332|SAD1|SNRNP65 ubiquitin specific peptidase 39 protein-coding 184.167-38 chr5 2579298 2579764 + 0.833333 NA Intergenic Intergenic -133060 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 280-7 chr2 30650570 30650977 + 0.833333 NA Intergenic Intergenic 156673 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 160.667-13 chr10 4417544 4417779 + 0.833333 NA Intergenic L1MC5a|LINE|L1 11192 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 166-57 chr6 162793899 162794353 + 0.833333 NA intron (NM_001080379, intron 1 of 4) L1ME3D|LINE|L1 66156 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 133.667-63 chr3 76698531 76698748 + 0.833333 NA Intergenic Intergenic -341460 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 129.333 chr1 32052058 32052313 + 0.833333 NA intron (NR_073499, intron 10 of 10) MIR3|SINE|MIR -19846 NM_001319677 55116 Hs.25544 NM_018056 ENSG00000121775 TMEM39B - transmembrane protein 39B protein-coding 208-40 chr7 139863606 139864128 + 0.833333 NA intron (NM_001366537, intron 1 of 11) L1M5|LINE|L1 34603 NM_030984 6916 Hs.520757 NM_001061 ENSG00000059377 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 protein-coding 217.667-15 chr16 47788930 47789243 + 0.833333 NA Intergenic L1MA9|LINE|L1 -69495 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 119.333-21 chr12 8889014 8889242 + 0.833333 NA Intergenic Charlie2b|DNA|hAT-Charlie -25381 NM_004426 1911 Hs.744902 NM_004426 ENSG00000111752 PHC1 EDR1|HPH1|MCPH11|RAE28 polyhomeotic homolog 1 protein-coding 337.333-7 chr8 121289263 121289834 + 0.833333 NA Intergenic Intergenic -349798 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 183.667-74 chr7 37880739 37881096 + 0.833333 NA intron (NM_016616, intron 12 of 17) L1MC2|LINE|L1 32320 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 262.5-23 chr8 85105241 85105619 + 0.833333 NA Intergenic L1PA17|LINE|L1 -1808 NM_001349637 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 209.333-40 chr5 57798693 57798994 + 0.833333 NA Intergenic Intergenic 100319 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 132.667-18 chr11 87427861 87428070 + 0.833333 NA Intergenic Intergenic 291446 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 185-24 chr2 18224739 18225137 + 0.833333 NA Intergenic L1PA15|LINE|L1 335715 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 183.5-19 chr16 74669647 74669979 + 0.833333 NA Intergenic Intergenic -2936 NM_001370543 55159 Hs.567525 NM_018124 ENSG00000168411 RFWD3 FANCW|RNF201 ring finger and WD repeat domain 3 protein-coding 131.167-8 chr10 10223809 10224248 + 0.833333 NA Intergenic Intergenic 165306 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 143.667-67 chr3 45706791 45707022 + 0.833333 NA exon (NM_014016, exon 4 of 20) exon (NM_014016, exon 4 of 20) 17510 NM_001319072 22908 Hs.156509 NM_014016 ENSG00000211456 SACM1L SAC1 SAC1 like phosphatidylinositide phosphatase protein-coding 130.167-34 chr2 217155440 217155668 + 0.833333 NA Intergenic MIRb|SINE|MIR -127179 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 159.5-9 chr10 115291456 115291782 + 0.833333 NA intron (NM_207303, intron 15 of 28) L1MA5A|LINE|L1 198254 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 119.167-56 chr21 15793644 15793831 + 0.833333 NA intron (NM_001283042, intron 5 of 24) intron (NM_001283042, intron 5 of 24) 63755 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 161.167-10 chr11 98030120 98030344 + 0.833333 NA Intergenic Intergenic -990717 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 113.667-7 chr1 164873116 164873332 + 0.833333 NA intron (NM_001353131, intron 7 of 7) L3|LINE|CR1 -98583 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 166.333-36 chr2 75867180 75867397 + 0.833333 NA Intergenic Intergenic -156373 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 151.5-28 chr17 80357629 80357860 + 0.833333 NA intron (NR_029376, intron 1 of 1) AluJr|SINE|Alu -57423 NM_001164637 284131 Hs.389678 NM_173627 ENSG00000173818 ENDOV - endonuclease V protein-coding 221.833-17 chr3 176939114 176939429 + 0.833333 NA Intergenic Intergenic -122270 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 192.833-30 chr5 51753620 51754086 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -254178 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 137.167-46 chr4 74268839 74269218 + 0.833333 NA intron (NR_147097, intron 8 of 9) intron (NR_147097, intron 8 of 9) -39442 NM_001270990 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 115.667-16 chr11 9409866 9410125 + 0.833333 NA exon (NM_006391, exon 4 of 25) exon (NM_006391, exon 4 of 25) -18771 NR_002962 677808 Hs.689720 NR_002962 ENSG00000201998 SNORA23 ACA23 small nucleolar RNA, H/ACA box 23 snoRNA 163.167-16 chr16 50671965 50672226 + 0.833333 NA TTS (NR_110908) TTS (NR_110908) 3240 NR_110908 101927272 Hs.460777 NR_110908 ENSG00000260249 LOC101927272 - uncharacterized LOC101927272 ncRNA 128.5-4 chr1 80838884 80839128 + 0.833333 NA Intergenic L2c|LINE|L2 197719 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 131.167-32 chr17 28332620 28333018 + 0.833333 NA intron (NM_001267774, intron 1 of 5) L2c|LINE|L2 2653 NM_001267774 90410 Hs.705431 NM_174887 ENSG00000109083 IFT20 - intraflagellar transport 20 protein-coding 172.167-42 chr5 127433715 127434003 + 0.833333 NA intron (NM_001256545, intron 14 of 24) intron (NM_001256545, intron 14 of 24) -83781 NM_130809 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 129.833-9 chr10 58831423 58831697 + 0.833333 NA TTS (NM_001080512) TTS (NM_001080512) 116545 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 204.5-46 chr9 99839620 99840041 + 0.833333 NA intron (NM_006981, intron 5 of 7) intron (NM_006981, intron 5 of 7) 17945 NM_173199 8013 Hs.279522 NM_006981 ENSG00000119508 NR4A3 CHN|CSMF|MINOR|NOR1|TEC nuclear receptor subfamily 4 group A member 3 protein-coding 123.333-81 chr4 58939504 58939720 + 0.833333 NA Intergenic L2c|LINE|L2 -44670 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 197-44 chr7 29868358 29868768 + 0.833333 NA intron (NM_001080529, intron 2 of 8) (TA)n|Simple_repeat|Simple_repeat 62009 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 161.667-23 chr11 72791270 72791534 + 0.833333 NA intron (NM_006645, intron 1 of 6) intron (NM_006645, intron 1 of 6) 2303 NM_006645 10809 Hs.188606 NM_006645 ENSG00000214530 STARD10 CGI-52|NY-CO-28|PCTP2|SDCCAG28 StAR related lipid transfer domain containing 10 protein-coding 114.167-39 chr17 61212500 61212778 + 0.833333 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 155065 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 171-13 chr12 128466449 128466903 + 0.833333 NA intron (NM_001136103, intron 2 of 8) AluJb|SINE|Alu 172584 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 331.167-3 chr8 35306075 35306841 + 0.833333 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) 70983 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 163-53 chr6 89844328 89844769 + 0.833333 NA intron (NM_012115, intron 1 of 9) MER68|LTR|ERVL 14648 NM_001137668 9994 Hs.558218 NM_012115 ENSG00000118412 CASP8AP2 CED-4|FLASH|RIP25 caspase 8 associated protein 2 protein-coding 210-10 chr17 40394464 40394754 + 0.833333 NA intron (NM_001067, intron 29 of 34) AluSz|SINE|Alu 23287 NM_001067 7153 Hs.156346 NM_001067 ENSG00000131747 TOP2A TOP2|TP2A DNA topoisomerase II alpha protein-coding 222.167-4 chr1 245882394 245882684 + 0.833333 NA intron (NM_022743, intron 8 of 11) intron (NM_022743, intron 8 of 11) 534873 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 226.5-11 chr11 74635282 74635598 + 0.833333 NA intron (NM_001363597, intron 10 of 11) AluJo|SINE|Alu 42858 NM_001363597 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 158-33 chr3 117749307 117749693 + 0.833333 NA Intergenic L2b|LINE|L2 -58575 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 343-2 chr2 122901394 122902327 + 0.833333 NA Intergenic L1MD|LINE|L1 171621 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 130.333-12 chr10 46539924 46540271 + 0.833333 NA Intergenic Intergenic 15974 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 217.333-6 chr11 45064803 45065262 + 0.833333 NA Intergenic Intergenic -28981 NM_001359633 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 140.667 chr1 11348408 11348609 + 0.833333 NA Intergenic AluJb|SINE|Alu 75310 NM_001330350 29914 Hs.522933 NM_013319 ENSG00000120942 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 196.5-32 chr6 62682094 62682475 + 0.833333 NA Intergenic Intergenic -396057 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 146.5-79 chr7 35688322 35688540 + 0.833333 NA intron (NM_022373, intron 2 of 8) intron (NM_022373, intron 2 of 8) 6704 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 187.333-5 chr10 21912047 21912328 + 0.833333 NA intron (NM_022365, intron 6 of 11) intron (NM_022365, intron 6 of 11) 91543 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 263.5-12 chr19 24370283 24371026 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -207207 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 157.5-47 chr4 108720557 108721010 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie 42270 NM_031279 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 153-12 chr10 79099103 79099351 + 0.833333 NA intron (NM_020338, intron 1 of 24) intron (NM_020338, intron 1 of 24) 30261 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 137.5-8 chr1 164699790 164700253 + 0.833333 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 74620 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 165.333-41 chr4 33176002 33176347 + 0.833333 NA Intergenic MER89|LTR|ERV1 825136 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 366.333-7 chr7 65401452 65402070 + 0.833333 NA TTS (NM_001287533) TTS (NM_001287533) 27906 NM_001287534 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 284-10 chr9 115511254 115511775 + 0.833333 NA Intergenic L1ME3D|LINE|L1 232725 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 153.333-60 chr4 36807740 36807965 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -165952 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 193.667-6 chr10 58144651 58145235 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR 122951 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 170.167-33 chr21 23274727 23275032 + 0.833333 NA Intergenic AluSx|SINE|Alu 109956 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 215-36 chr6 135752028 135752471 + 0.833333 NA Intergenic L1MA8|LINE|L1 -99452 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 238.5-2 chr1 172032685 172033141 + 0.833333 NA intron (NM_001278252, intron 5 of 14) intron (NM_001278252, intron 5 of 14) -105895 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 186.667-27 chr18 2519801 2520330 + 0.833333 NA Intergenic AluJb|SINE|Alu 51440 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 168-67 chr6 25517977 25518189 + 0.833333 NA intron (NM_001173977, intron 22 of 36) intron (NM_001173977, intron 22 of 36) -134132 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 133.333-93 chr4 162060018 162060317 + 0.833333 NA intron (NM_020116, intron 2 of 15) intron (NM_020116, intron 2 of 15) 37434 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 126.667-88 chr7 30238654 30238931 + 0.833333 NA Intergenic Intergenic -45805 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 138.667-8 chr10 21605185 21605394 + 0.833333 NA intron (NM_001195626, intron 5 of 22) MER47B|DNA|TcMar-Tigger 71117 NM_001195628 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 114.667-130 chr8 134882081 134882345 + 0.833333 NA TTS (NR_125427) TTS (NR_125427) 32278 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 187.333-65 chr5 5577873 5578192 + 0.833333 NA Intergenic AluSx3|SINE|Alu 155355 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 143.167-54 chr4 32994616 32994919 + 0.833333 NA Intergenic Intergenic 643729 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 230.5-14 chr5 28788226 28788594 + 0.833333 NA Intergenic Intergenic -138460 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 225.667-27 chr6 35673385 35673810 + 0.833333 NA intron (NM_001145775, intron 2 of 11) (TATTTA)n|Simple_repeat|Simple_repeat -8808 NR_049873 100847048 NR_049873 ENSG00000265527 MIR5690 - microRNA 5690 ncRNA 272.5-22 chr9 8064343 8064773 + 0.833333 NA Intergenic Intergenic -264780 NM_001318059 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 167.833-35 chr3 86447348 86447566 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL -34486 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 173.5-20 chr15 63116533 63116979 + 0.833333 NA Intergenic Intergenic -5105 NM_032857 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 171.667-37 chr18 11565901 11566136 + 0.833333 NA Intergenic Intergenic -43540 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 197.5-14 chr11 44551642 44552007 + 0.833333 NA Intergenic (TGA)n|Simple_repeat|Simple_repeat -13839 NM_001024844 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 159.833-53 chr8 126263721 126263971 + 0.833333 NA Intergenic L1MEh|LINE|L1 -61649 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 179.667-44 chr6 8604876 8605248 + 0.833333 NA intron (NR_038980, intron 3 of 4) L1MEi|LINE|L1 -47147 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 152.667-14 chr11 9978218 9978424 + 0.833333 NA intron (NM_030962, intron 13 of 39) intron (NM_030962, intron 13 of 39) 139179 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 190.5-23 chr17 929001 929385 + 0.833333 NA intron (NM_022463, intron 1 of 7) MER102a|DNA|hAT-Charlie 19561 NR_135633 101927727 Hs.666198 NR_135633 ENSG00000262003 LOC101927727 - uncharacterized LOC101927727 ncRNA 196.833-10 chr12 11529805 11530213 + 0.833333 NA Intergenic L1MDa|LINE|L1 -18021 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 161.5-14 chr16 81777085 81777334 + 0.833333 NA Intergenic Intergenic -2082 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 180.167-43 chr4 187629481 187629955 + 0.833333 NA intron (NR_110436, intron 2 of 2) L1M3e|LINE|L1 42923 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 141.333-38 chr16 23526849 23527102 + 0.833333 NA intron (NM_001083614, intron 7 of 8) AluJr|SINE|Alu -16481 NM_015044 23062 Hs.460336 NM_015044 ENSG00000103365 GGA2 VEAR golgi associated, gamma adaptin ear containing, ARF binding protein 2 protein-coding 176-31 chr4 104469107 104469400 + 0.833333 NA non-coding (NR_132741, exon 3 of 3) non-coding (NR_132741, exon 3 of 3) -21712 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 234.833-15 chr2 124182824 124183140 + 0.833333 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 157695 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 240.667-42 chr8 75777567 75778124 + 0.833333 NA Intergenic Intergenic 237877 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 163-20 chr15 67762076 67762310 + 0.833333 NA intron (NM_001206804, intron 19 of 21) intron (NM_001206804, intron 19 of 21) -63316 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 175.5-19 chr19 32810299 32810573 + 0.833333 NA intron (NM_001366102, intron 23 of 32) intron (NM_001366102, intron 23 of 32) 59331 NM_001243036 11136 Hs.743345 NM_014270 ENSG00000021488 SLC7A9 BAT1|CSNU3 solute carrier family 7 member 9 protein-coding 332.167 chr11 29955472 29955915 + 0.833333 NA Intergenic L1PA13|LINE|L1 26700 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 211.167-35 chr8 84064304 84064891 + 0.833333 NA Intergenic MER58B|DNA|hAT-Charlie -118190 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 277-17 chr7 21152631 21153411 + 0.833333 NA Intergenic L2|LINE|L2 -275062 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 118.667-45 chr18 7898151 7898330 + 0.833333 NA intron (NM_002845, intron 3 of 30) intron (NM_002845, intron 3 of 30) 330924 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 220.667-9 chr12 108566019 108566648 + 0.833333 NA intron (NM_014301, intron 4 of 5) intron (NM_014301, intron 4 of 5) 4870 NM_213595 23479 Hs.615131 NM_014301 ENSG00000136003 ISCU 2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU iron-sulfur cluster assembly enzyme protein-coding 120.5-39 chr16 3649654 3650132 + 0.833333 NA Intergenic Intergenic -3046 NM_005223 1773 Hs.629638 NM_005223 ENSG00000213918 DNASE1 DNL1|DRNI deoxyribonuclease 1 protein-coding 239.833-18 chr4 15859589 15860025 + 0.833333 NA Intergenic L1MA4A|LINE|L1 78933 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 125.667-29 chr14 42103046 42103373 + 0.833333 NA Intergenic L2a|LINE|L2 496353 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 120-110 chr8 133741722 133741985 + 0.833333 NA Intergenic Intergenic 35499 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 163.667 chr1 10676946 10677213 + 0.833333 NA intron (NM_001079843, intron 4 of 20) intron (NM_001079843, intron 4 of 20) 119567 NM_017766 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 187.333-56 chr3 188813542 188813784 + 0.833333 NA intron (NM_001167672, intron 7 of 9) intron (NM_001167672, intron 7 of 9) 124882 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 193.167 chr1 51182477 51182823 + 0.833333 NA Intergenic AluSx|SINE|Alu 52446 NR_147076 105378716 NR_147076 ENSG00000203356 LINC01562 - long intergenic non-protein coding RNA 1562 ncRNA 213.833-30 chr5 34515069 34515369 + 0.833333 NA Intergenic Intergenic -141109 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 117.667-49 chr16 65291203 65291467 + 0.833333 NA intron (NR_027755, intron 8 of 8) LTR78|LTR|ERV1 -114762 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 166.667-45 chr5 149184081 149184430 + 0.833333 NA intron (NM_001370418, intron 2 of 18) L3|LINE|CR1 42524 NM_001370418 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 117-17 chr10 86848139 86848385 + 0.833333 NA intron (NM_004329, intron 2 of 12) MIR|SINE|MIR 91623 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 192.167-37 chr5 175651952 175652196 + 0.833333 NA Intergenic Intergenic -5997 NM_001367711 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 145.667-62 chr3 77576176 77576448 + 0.833333 NA intron (NM_001290039, intron 15 of 26) intron (NM_001290039, intron 15 of 26) 472651 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 198-7 chr1 189996099 189996556 + 0.833333 NA Intergenic Intergenic 479683 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 206.5-37 chr8 21066461 21066743 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 92616 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 173.333-19 chr14 29133019 29133499 + 0.833333 NA Intergenic Intergenic -347472 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 187.167-48 chr9 34242632 34243047 + 0.833333 NA intron (NR_033243, intron 5 of 7) intron (NR_033243, intron 5 of 7) 63796 NM_016525 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 224-8 chr12 14392215 14392796 + 0.833333 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 7224 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 151.667-82 chr7 92318685 92318956 + 0.833333 NA intron (NM_019004, intron 3 of 19) intron (NM_019004, intron 3 of 19) -72720 NM_001350688 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 160.833-28 chr2 238821055 238821278 + 0.833333 NA Intergenic Intergenic 26741 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 196-10 chr10 82404038 82404329 + 0.833333 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -171263 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 163.5-25 chr16 60948887 60949276 + 0.833333 NA Intergenic Intergenic 106685 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 181.667-37 chr3 70176558 70176992 + 0.833333 NA Intergenic Tigger13a|DNA|TcMar-Tigger 135863 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 124.667-38 chr15 32952028 32952267 + 0.833333 NA intron (NM_001277313, intron 9 of 20) intron (NM_001277313, intron 9 of 20) 116027 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 231.333-7 chr1 246464874 246465305 + 0.833333 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) 42190 NM_001167740 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 361.333-5 chr4 150366558 150367013 + 0.833333 NA intron (NM_001367550, intron 47 of 56) intron (NM_001367550, intron 47 of 56) -212304 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 211.333 chr1 38914177 38914438 + 0.833333 NA intron (NM_001304746, intron 3 of 7) AluSx|SINE|Alu 15212 NM_001304746 54933 Hs.524626 NM_017821 ENSG00000158315 RHBDL2 RRP2 rhomboid like 2 protein-coding 274.5-5 chr18 13310493 13311116 + 0.833333 NA intron (NM_181482, intron 2 of 5) intron (NM_181482, intron 2 of 5) 32699 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 264.333-14 chr5 137470678 137471075 + 0.833333 NA intron (NM_004598, intron 2 of 10) MIR|SINE|MIR 28450 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 288.833-11 chr9 102028307 102028920 + 0.833333 NA Intergenic L1PA11|LINE|L1 -290033 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 123.833-34 chr2 161648687 161648855 + 0.833333 NA intron (NM_001354451, intron 1 of 25) L1ME3G|LINE|L1 24355 NM_001354445 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 147.833-45 chr3 133382009 133382211 + 0.833333 NA intron (NM_023943, intron 4 of 5) intron (NM_023943, intron 4 of 5) -17946 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 165.333-53 chr6 44943511 44944010 + 0.833333 NA intron (NM_181356, intron 11 of 12) L1MEf|LINE|L1 254010 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 123.667-74 chr4 20598607 20598785 + 0.833333 NA intron (NM_001289135, intron 32 of 35) LTR33|LTR|ERVL 70421 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 248.5-6 chr2 76329387 76329824 + 0.833333 NA Intergenic Intergenic -618690 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 127-86 chr6 88278716 88279053 + 0.833333 NA Intergenic Intergenic -111535 NM_001370546 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 139.5-39 chr3 114555159 114555494 + 0.833333 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) 68880 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 197.5-54 chr8 84746674 84747006 + 0.833333 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 40913 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 140-41 chr20 9625145 9625444 + 0.833333 NA intron (NM_020341, intron 4 of 10) intron (NM_020341, intron 4 of 10) -110296 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 157.5-42 chr3 121249349 121249568 + 0.833333 NA intron (NM_001348343, intron 14 of 27) L1PA16|LINE|L1 199818 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 199-8 chr14 72347586 72347949 + 0.833333 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -169053 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 123.5-65 chr5 103289789 103289987 + 0.833333 NA Intergenic Intergenic 30464 NM_001316968 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 222.333-35 chr8 78458999 78459395 + 0.833333 NA Intergenic L1MA6|LINE|L1 -57143 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 234.333-8 chr12 55573071 55573696 + 0.833333 NA Intergenic Intergenic -1032 NM_001258285 121129 Hs.742584 NM_001258285 ENSG00000179615 OR2AP1 OR2AP1P olfactory receptor family 2 subfamily AP member 1 protein-coding 125.667-38 chr15 48796420 48796633 + 0.833333 NA intron (NM_014985, intron 5 of 25) intron (NM_014985, intron 5 of 25) 14543 NM_014985 22995 Hs.443005 NM_014985 ENSG00000103995 CEP152 MCPH4|MCPH9|SCKL5 centrosomal protein 152 protein-coding 262.333-8 chr14 47691076 47691581 + 0.833333 NA Intergenic L1M6|LINE|L1 -16374 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 215.833-13 chr2 223362143 223362589 + 0.833333 NA Intergenic Intergenic 239995 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 160.5-32 chr22 27661109 27661387 + 0.833333 NA Intergenic L1MB7|LINE|L1 140508 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 154.5-4 chr10 45560842 45561195 + 0.833333 NA intron (NM_145021, intron 1 of 6) L4_A_Mam|LINE|RTE-X -25647 NM_001002266 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 174.667-54 chr5 132544020 132544474 + 0.833333 NA promoter-TSS (NM_000879) promoter-TSS (NM_000879) -725 NM_000879 3567 Hs.2247 NM_000879 ENSG00000113525 IL5 EDF|IL-5|TRF interleukin 5 protein-coding 178-48 chr5 133403035 133403409 + 0.833333 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 24484 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 212.333-31 chr5 166697043 166697459 + 0.833333 NA Intergenic Intergenic 229119 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 150.833-47 chr6 70120838 70121086 + 0.833333 NA intron (NM_001858, intron 16 of 50) intron (NM_001858, intron 16 of 50) 162235 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 267.167-7 chr13 77760344 77760784 + 0.833333 NA intron (NM_001242868, intron 5 of 6) intron (NM_001242868, intron 5 of 6) 19345 NM_001242870 122060 Hs.349955 NM_144595 ENSG00000139737 SLAIN1 C13orf32 SLAIN motif family member 1 protein-coding 130.333-55 chr20 54833707 54834090 + 0.833333 NA Intergenic Intergenic 358305 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 203.333-34 chr4 42034977 42035331 + 0.833333 NA intron (NM_006345, intron 6 of 17) intron (NM_006345, intron 6 of 17) 44624 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 134-30 chr12 65572516 65572702 + 0.833333 NA intron (NR_120434, intron 3 of 4) L2c|LINE|L2 -15298 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 310.167-3 chr2 65014416 65015196 + 0.833333 NA intron (NM_001193493, intron 4 of 6) L1ME3G|LINE|L1 25407 NM_003038 6509 Hs.654352 NM_003038 ENSG00000115902 SLC1A4 ASCT1|SATT|SPATCCM solute carrier family 1 member 4 protein-coding 130.333-19 chr11 69102640 69102819 + 0.833333 NA Intergenic Intergenic 19553 NR_036122 100422846 NR_036122 ENSG00000265539 MIR3164 - microRNA 3164 ncRNA 161.333-51 chr4 19959580 19959807 + 0.833333 NA Intergenic Intergenic -292212 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 244.667-3 chr10 115820578 115820942 + 0.833333 NA intron (NM_207303, intron 27 of 28) MIR|SINE|MIR 374029 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 251.833 chr11 19637232 19637580 + 0.833333 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 62096 NR_039706 100616118 NR_039706 ENSG00000265210 MIR4486 - microRNA 4486 ncRNA 165.833-28 chr17 61933324 61933597 + 0.833333 NA Intergenic L1PREC2|LINE|L1 -5478 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 156.167-34 chr2 99772167 99772422 + 0.833333 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) -282277 NM_001321454 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 291.667-20 chr5 26112766 26113183 + 0.833333 NA Intergenic Intergenic 922021 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 150.333-16 chr10 82146635 82146956 + 0.833333 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 86125 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 249.667-49 chr9 27668075 27668538 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -94440 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 138.5-61 chr5 153433531 153433715 + 0.833333 NA Intergenic L2a|LINE|L2 -56901 NM_001258019 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 145.167-34 chr2 203564363 203564563 + 0.833333 NA Intergenic Intergenic -29162 NM_001329728 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 135.167-60 chr20 63059067 63059372 + 0.833333 NA intron (NR_033370, intron 1 of 4) intron (NR_033370, intron 1 of 4) 21208 NR_033369 100144597 Hs.636485 NR_033369 ENSG00000237119 LINC01056 - long intergenic non-protein coding RNA 1056 ncRNA 232.333-18 chr2 182757155 182757570 + 0.833333 NA intron (NR_073367, intron 17 of 22) intron (NR_073367, intron 17 of 22) 41105 NM_018981 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 283-9 chr8 79897468 79897955 + 0.833333 NA Intergenic Intergenic -25974 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 223.167-9 chr6 161231477 161231979 + 0.833333 NA intron (NM_020133, intron 2 of 8) L1ME4b|LINE|L1 42333 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 176.5-61 chr7 29552960 29553399 + 0.833333 NA Intergenic Intergenic -10656 NM_001329996 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 114.833-77 chr9 109059757 109059959 + 0.833333 NA intron (NM_032012, intron 11 of 17) MER33|DNA|hAT-Charlie -13560 NR_029506 407036 NR_029506 ENSG00000207698 MIR32 MIRN32|hsa-mir-32|miR-32|miRNA32 microRNA 32 ncRNA 161.333-22 chr14 43034652 43034970 + 0.833333 NA Intergenic MER99|DNA|hAT? 1427955 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 192-37 chr5 80733855 80734357 + 0.833333 NA intron (NM_002439, intron 10 of 23) L1MB7|LINE|L1 -79123 NM_001290354 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 165.833-43 chr4 30408385 30408715 + 0.833333 NA Intergenic L1M2|LINE|L1 -311819 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 225.5-14 chr13 25365777 25366297 + 0.833333 NA Intergenic Intergenic -5937 NM_016529 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 185.167-14 chr14 77161799 77162067 + 0.833333 NA Intergenic Intergenic -19865 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 177.333-37 chr2 159232389 159232848 + 0.833333 NA TTS (NM_033394) TTS (NM_033394) 45783 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 146.667-26 chr13 36614741 36615154 + 0.833333 NA Intergenic Intergenic -59073 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 178.333-43 chr6 169930523 169930862 + 0.833333 NA Intergenic Intergenic -31931 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 192.167-11 chr13 79686627 79687126 + 0.833333 NA Intergenic Intergenic -117510 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 178-7 chr10 117951647 117952069 + 0.833333 NA Intergenic Intergenic -94963 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 248-9 chr2 198089733 198090332 + 0.833333 NA intron (NM_006226, intron 3 of 5) L1ME4a|LINE|L1 285065 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 118.167-46 chr3 125498616 125498778 + 0.833333 NA intron (NR_073435, intron 1 of 12) MIRb|SINE|MIR 21505 NM_003794 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 275-13 chr6 65367054 65367406 + 0.833333 NA intron (NM_198283, intron 7 of 9) intron (NM_198283, intron 7 of 9) 65812 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 209.333-48 chr8 143198447 143198741 + 0.833333 NA Intergenic MER65A|LTR|ERV1 -14624 NM_001301772 338328 Hs.426410 NM_178172 ENSG00000277494 GPIHBP1 GPI-HBP1|HYPL1D glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 protein-coding 159.333-20 chr11 94288635 94288849 + 0.833333 NA Intergenic L1M4|LINE|L1 -16895 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 161.333-9 chr10 130726215 130726446 + 0.833333 NA Intergenic Intergenic 236338 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 171-24 chr2 132803491 132803868 + 0.833333 NA intron (NM_207481, intron 11 of 17) intron (NM_207481, intron 11 of 17) -111878 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 146.5-20 chr12 30537375 30537577 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger 139768 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 114.5-29 chr12 113423264 113423578 + 0.833333 NA intron (NM_001304993, intron 1 of 7) MIR|SINE|MIR 1031 NM_138432 113675 Hs.337594 NM_138432 ENSG00000139410 SDSL SDH 2|SDS-RS1|TDH|cSDH serine dehydratase like protein-coding 181.333-22 chr17 42315224 42315539 + 0.833333 NA 3' UTR (NM_139276, exon 24 of 24) 3' UTR (NM_139276, exon 24 of 24) 27325 NM_001288719 6776 Hs.437058 NM_003152 ENSG00000126561 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 191.167-7 chr14 89970977 89971231 + 0.833333 NA intron (NM_001008744, intron 4 of 15) AluSx|SINE|Alu 15177 NM_018319 55775 Hs.209945 NM_018319 ENSG00000042088 TDP1 - tyrosyl-DNA phosphodiesterase 1 protein-coding 238.667-24 chr4 156685245 156685701 + 0.833333 NA Intergenic Intergenic 286326 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 192-33 chr4 105342361 105342648 + 0.833333 NA intron (NR_126420, intron 1 of 5) intron (NR_126420, intron 1 of 5) 10377 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 252.167-19 chr9 32450571 32451108 + 0.833333 NA TTS (NM_001278352) TTS (NM_001278352) 66196 NM_001362840 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 118.167-40 chr22 20409204 20409632 + 0.833333 NA TTS (NM_003426) TTS (NM_003426) 15267 NR_046282 7625 Hs.517418 NM_003426 ENSG00000185252 ZNF74 COS52|ZFP520|ZNF520|hZNF7 zinc finger protein 74 protein-coding 173.5-17 chr13 54875500 54875875 + 0.833333 NA Intergenic Intergenic -298767 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 120.167-10 chr10 37784544 37784772 + 0.833333 NA intron (NR_147992, intron 6 of 8) ERVL-E-int|LTR|ERVL 10517 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 170.833-22 chr20 10210087 10210407 + 0.833333 NA intron (NR_040710, intron 1 of 4) intron (NR_040710, intron 1 of 4) -8551 NM_003081 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 319-3 chr12 43187243 43187743 + 0.833333 NA Intergenic L1M5|LINE|L1 32178 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 173.5-44 chr5 42763912 42764244 + 0.833333 NA intron (NM_001134848, intron 3 of 8) L1MC2|LINE|L1 7260 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 177.167-16 chr18 44210783 44211120 + 0.833333 NA Intergenic L1PREC2|LINE|L1 320746 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 265.5-7 chr19 32400240 32400661 + 0.833333 NA intron (NR_046201, intron 1 of 2) AluSx1|SINE|Alu 5089 NR_046201 400684 Hs.438766 NR_046201 ENSG00000267213 LOC400684 - uncharacterized LOC400684 ncRNA 266.167-21 chr8 38453065 38453415 + 0.833333 NA intron (NM_001174064, intron 2 of 18) intron (NM_001174064, intron 2 of 18) 14484 NM_001174066 2260 Hs.264887 NM_015850 ENSG00000077782 FGFR1 BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 256.5-3 chr10 70940245 70940565 + 0.833333 NA intron (NR_134313, intron 1 of 2) intron (NR_134313, intron 1 of 2) 1352 NR_134314 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 194.667-15 chr11 31658491 31658996 + 0.833333 NA intron (NM_019040, intron 9 of 9) intron (NM_019040, intron 9 of 9) 141918 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 167.333-47 chr4 56578408 56578644 + 0.833333 NA intron (NM_001256475, intron 5 of 8) L1MB7|LINE|L1 47920 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 260.833-18 chrX 101372132 101372630 + 0.833333 NA intron (NM_000061, intron 3 of 18) L1ME4a|LINE|L1 13843 NM_001287345 695 Hs.159494 NM_000061 ENSG00000010671 BTK AGMX1|AT|ATK|BPK|IGHD3|IMD1|PSCTK1|XLA Bruton tyrosine kinase protein-coding 145.667-30 chr14 58337271 58337699 + 0.833333 NA intron (NM_002892, intron 11 of 23) intron (NM_002892, intron 11 of 23) 38930 NM_002892 5926 Hs.161000 NM_002892 ENSG00000032219 ARID4A RBBP-1|RBBP1|RBP-1|RBP1 AT-rich interaction domain 4A protein-coding 150.667-91 chr8 85341596 85341863 + 0.833333 NA promoter-TSS (NM_001164830) promoter-TSS (NM_001164830) -15 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 126.333-106 chr8 21019580 21019747 + 0.833333 NA Intergenic Intergenic 45677 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 205.5-4 chr11 102145221 102145829 + 0.833333 NA intron (NM_001130145, intron 2 of 8) intron (NM_001130145, intron 2 of 8) 33077 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 252-5 chr15 61534183 61534665 + 0.833333 NA Intergenic Intergenic -195494 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 322.5-2 chr11 26691792 26692388 + 0.833333 NA intron (NM_178498, intron 9 of 14) MER30|DNA|hAT-Charlie 29970 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 170.833-21 chr2 148879767 148880061 + 0.833333 NA intron (NM_004522, intron 1 of 25) intron (NM_004522, intron 1 of 25) 4687 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 168-55 chr5 41912002 41912380 + 0.833333 NA intron (NM_175921, intron 5 of 5) intron (NM_175921, intron 5 of 5) 7847 NM_175921 285636 Hs.29899 NM_175921 ENSG00000205765 C5orf51 - chromosome 5 open reading frame 51 protein-coding 172.833-31 chr3 79803886 79804271 + 0.833333 NA Intergenic Intergenic -36080 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 165.667-8 chr1 239005868 239006145 + 0.833333 NA Intergenic Intergenic -380562 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 172.333-41 chr2 162111665 162111965 + 0.833333 NA Intergenic MLT1F|LTR|ERVL-MaLR -2626 NR_110255 101929532 Hs.639883 NR_110255 ENSG00000236841 LOC101929532 - uncharacterized LOC101929532 ncRNA 220.333-3 chr10 78288180 78288520 + 0.833333 NA Intergenic MamRep4096|DNA|hAT-Tip100 21008 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 316-10 chr7 7862314 7862915 + 0.833333 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) 106138 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 163.5-58 chr5 39031181 39031557 + 0.833333 NA intron (NM_001285439, intron 2 of 38) intron (NM_001285439, intron 2 of 38) 43030 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 278.667-13 chr3 184728333 184728968 + 0.833333 NA intron (NR_160768, intron 2 of 4) MER20B|DNA|hAT-Charlie 16407 NR_160768 107986163 NR_160768 LOC107986163 - uncharacterized LOC107986163 ncRNA 138-12 chr10 42614798 42614992 + 0.833333 NA intron (NM_001305040, intron 4 of 6) AluSg7|SINE|Alu 23675 NM_001305040 7582 Hs.435774 NM_006955 ENSG00000196693 ZNF33B KOX2|KOX31|ZNF11B zinc finger protein 33B protein-coding 154.833-18 chr15 43423729 43423930 + 0.833333 NA intron (NM_001355001, intron 19 of 28) L2|LINE|L2 52728 NM_001286414 27229 Hs.584887 NM_014444 ENSG00000137822 TUBGCP4 76P|GCP-4|GCP4|Grip76|MCCRP3 tubulin gamma complex associated protein 4 protein-coding 176-53 chr8 134085055 134085418 + 0.833333 NA Intergenic Intergenic 198740 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 132-94 chr8 100815110 100815314 + 0.833333 NA Intergenic Intergenic -93124 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 125.5-69 chr6 67420759 67420933 + 0.833333 NA Intergenic Intergenic -634505 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 143.833-6 chr11 69952182 69952446 + 0.833333 NA Intergenic Intergenic 111610 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 125.5-39 chr2 46943089 46943315 + 0.833333 NA intron (NM_001288951, intron 1 of 20) AluJb|SINE|Alu -1347 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 231.5-20 chr6 159312593 159313002 + 0.833333 NA Intergenic Intergenic -70734 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 166.333-56 chr4 86494903 86495283 + 0.833333 NA Intergenic Intergenic -41898 NM_002753 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 257.167-11 chr3 110176913 110177390 + 0.833333 NA Intergenic L1M5|LINE|L1 574323 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 217.5-44 chr6 136978577 136978938 + 0.833333 NA Intergenic L1M5|LINE|L1 14474 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 172.5-14 chr11 95418067 95418302 + 0.833333 NA Intergenic Intergenic -185709 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 201.333-44 chr8 138522656 138523104 + 0.833333 NA Intergenic Intergenic -25150 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 190.667-32 chr3 71243833 71244225 + 0.833333 NA intron (NR_146142, intron 5 of 19) intron (NR_146142, intron 5 of 19) 1048 NM_001244814 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 200.333-37 chr8 70599411 70599942 + 0.833333 NA intron (NM_001317804, intron 3 of 11) intron (NM_001317804, intron 3 of 11) 7993 NM_001317805 23471 Hs.491988 NM_014294 ENSG00000067167 TRAM1 PNAS8|TRAM|TRAMP translocation associated membrane protein 1 protein-coding 158-16 chr13 67163137 67163350 + 0.833333 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) 67093 NM_020403 5101 Hs.654709 NM_020403 ENSG00000184226 PCDH9 - protocadherin 9 protein-coding 213.5-20 chr2 148402731 148403481 + 0.833333 NA intron (NM_018328, intron 5 of 14) L1MEc|LINE|L1 -241645 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 144.167-39 chr2 158239858 158240049 + 0.833333 NA intron (NM_138803, intron 10 of 13) intron (NM_138803, intron 10 of 13) 73303 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 118.833-15 chr12 97195213 97195438 + 0.833333 NA Intergenic MER57B2|LTR|ERV1 -267451 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 135-67 chr4 27766932 27767149 + 0.833333 NA Intergenic Intergenic 549561 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 275-12 chr5 109150428 109150784 + 0.833333 NA intron (NR_146155, intron 17 of 19) intron (NR_146155, intron 17 of 19) 175763 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 170.333-27 chr15 56513743 56513996 + 0.833333 NA Intergenic L1P1|LINE|L1 -48732 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 242.5-20 chr7 45873331 45873722 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie -14962 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 133.833-23 chr12 87711568 87711774 + 0.833333 NA Intergenic L1MC3|LINE|L1 -57141 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 203.667-19 chr2 213427062 213427513 + 0.833333 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 142823 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 141.333-33 chr14 58448980 58449407 + 0.833333 NA intron (NM_001329944, intron 7 of 31) intron (NM_001329944, intron 7 of 31) 9512 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 197.833-13 chr2 22934375 22934747 + 0.833333 NA Intergenic L1MEf|LINE|L1 398082 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 246.167-12 chr17 73072146 73072937 + 0.833333 NA intron (NM_001352692, intron 3 of 9) intron (NM_001352692, intron 3 of 9) 20147 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 174.333-46 chr5 81695666 81696099 + 0.833333 NA intron (NM_012446, intron 1 of 16) intron (NM_012446, intron 1 of 16) 55371 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 139.167-49 chr21 23297525 23297812 + 0.833333 NA Intergenic L1MC5|LINE|L1 87167 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 144.833-51 chr3 121222326 121222572 + 0.833333 NA intron (NM_001348343, intron 10 of 27) intron (NM_001348343, intron 10 of 27) 172809 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 117-79 chr4 65518615 65518793 + 0.833333 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 150784 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 129-34 chr15 26406587 26406838 + 0.833333 NA Intergenic Intergenic 222378 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 137.333-36 chr17 29912940 29913134 + 0.833333 NA intron (NM_001282129, intron 1 of 15) AluSx|SINE|Alu -16866 NM_001145053 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 175-2 chr1 42600157 42600712 + 0.833333 NA intron (NM_001080850, intron 10 of 16) L1MCa|LINE|L1 -57989 NM_006347 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 123.167-42 chr19 35524766 35524913 + 0.833333 NA intron (NM_001166034, intron 2 of 3) intron (NM_001166034, intron 2 of 3) 3472 NM_001166034 374897 Hs.433484 NM_198538 ENSG00000189001 SBSN UNQ698 suprabasin protein-coding 156.333-44 chr19 31747538 31747938 + 0.833333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 155457 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 181.667-52 chr5 115464385 115464809 + 0.833333 NA Intergenic L1MEg|LINE|L1 80178 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 122.667-46 chr20 1498808 1499139 + 0.833333 NA Intergenic L1M1|LINE|L1 -7553 NM_001122962 284759 Hs.721685 NM_001122962 ENSG00000196209 SIRPB2 PTPN1L|PTPNS1L3|dJ776F14.2 signal regulatory protein beta 2 protein-coding 231.667-11 chr14 31620152 31620512 + 0.833333 NA intron (NM_001201573, intron 2 of 8) L1PA7|LINE|L1 42416 NM_001201573 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 155.333-69 chr3 142026586 142026929 + 0.833333 NA intron (NM_001178139, intron 3 of 12) intron (NM_001178139, intron 3 of 12) 1869 NM_001178141 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 228.5-34 chr7 132165127 132165674 + 0.833333 NA intron (NM_020911, intron 22 of 31) intron (NM_020911, intron 22 of 31) -95461 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 212.667-45 chr8 19927375 19927772 + 0.833333 NA Intergenic L1ME4b|LINE|L1 -11680 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 142.833-35 chr2 37490292 37490686 + 0.833333 NA Intergenic AluSq|SINE|Alu 145859 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 156.833-50 chr6 126528840 126529094 + 0.833333 NA Intergenic Intergenic 44336 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 216.5-3 chr10 69537217 69537765 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR 35931 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 220.667-22 chr3 17311453 17311813 + 0.833333 NA intron (NM_014744, intron 13 of 21) intron (NM_014744, intron 13 of 21) 378437 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 242.833-8 chr4 82922042 82922500 + 0.833333 NA Intergenic L1MC|LINE|L1 -21355 NR_034076 100499177 Hs.728916 NR_034075 ENSG00000251022 THAP9-AS1 - THAP9 antisense RNA 1 ncRNA 159.333-12 chr10 61673852 61674206 + 0.833333 NA intron (NM_001366906, intron 2 of 7) intron (NM_001366906, intron 2 of 7) 11068 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 274.833-7 chr3 113669236 113669651 + 0.833333 NA intron (NM_001009899, intron 5 of 6) HAL1|LINE|L1 27199 NM_001009899 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 220-14 chr2 98386205 98386634 + 0.833333 NA intron (NM_001298, intron 5 of 7) THE1B|LTR|ERVL-MaLR 39963 NM_001079878 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 242.333-10 chr2 191433332 191433677 + 0.833333 NA Intergenic Intergenic 188100 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 154.833-40 chr22 47312723 47312916 + 0.833333 NA Intergenic L1ME1|LINE|L1 -32752 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 128.833-90 chrX 97601474 97601756 + 0.833333 NA 3' UTR (NM_006729, exon 27 of 27) 3' UTR (NM_006729, exon 27 of 27) -37080 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 135-39 chr2 99418558 99418775 + 0.833333 NA intron (NR_135652, intron 12 of 21) intron (NR_135652, intron 12 of 21) 71351 NM_016316 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 145.5-11 chr12 48256717 48257010 + 0.833333 NA Intergenic L1MC5|LINE|L1 -53571 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 145.667-11 chr10 86613566 86613921 + 0.833333 NA Intergenic AluSx|SINE|Alu -40804 NM_033282 94233 Hs.283922 NM_033282 ENSG00000122375 OPN4 MOP opsin 4 protein-coding 167.667-17 chr12 12658171 12658623 + 0.833333 NA Intergenic AluSz6|SINE|Alu 37786 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 254.5-10 chr4 94048648 94049161 + 0.833333 NA Intergenic Intergenic 158652 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 176.167-3 chr1 166976355 166976820 + 0.833333 NA intron (NM_001286378, intron 1 of 12) L2c|LINE|L2 1005 NM_001286378 84944 Hs.651245 NM_032858 ENSG00000143194 MAEL CT128|SPATA35 maelstrom spermatogenic transposon silencer protein-coding 123.167-28 chr14 72559959 72560131 + 0.833333 NA intron (NR_135235, intron 18 of 18) intron (NR_135235, intron 18 of 18) 43225 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 133.5-49 chr4 166778049 166778311 + 0.833333 NA intron (NM_001204356, intron 6 of 9) intron (NM_001204356, intron 6 of 9) 456246 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 187.167-49 chrX 54310132 54310599 + 0.833333 NA intron (NM_001002838, intron 3 of 22) AluJb|SINE|Alu 47640 NM_020922 65267 Hs.92423 NM_020922 ENSG00000196632 WNK3 PRKWNK3 WNK lysine deficient protein kinase 3 protein-coding 178.5-41 chr18 77455201 77455546 + 0.833333 NA Intergenic Intergenic 205525 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 136.667 chr1 57784878 57785073 + 0.833333 NA intron (NM_001353980, intron 3 of 5) Tigger1|DNA|TcMar-Tigger -75606 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 230-13 chr2 153289312 153289804 + 0.833333 NA Intergenic Intergenic 189204 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 137.833-49 chr7 28376887 28377154 + 0.833333 NA intron (NM_182899, intron 1 of 9) L3|LINE|CR1 -35498 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 235.334-6 chr9 92319129 92319916 + 0.833333 NA intron (NM_001256394, intron 5 of 17) intron (NM_001256394, intron 5 of 17) 5828 NM_017948 55035 Hs.442199 NM_017948 ENSG00000198000 NOL8 C9orf34|NOP132|bA62C3.3|bA62C3.4 nucleolar protein 8 protein-coding 155.5-41 chr4 59848888 59849098 + 0.833333 NA Intergenic L1MEc|LINE|L1 835420 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 113.667-68 chr2 104596120 104596372 + 0.833333 NA Intergenic L1M6|LINE|L1 -85737 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 164.333 chr1 101202404 101202781 + 0.833333 NA Intergenic Intergenic 33936 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 168.167-19 chr15 59977422 59977915 + 0.833333 NA Intergenic Intergenic -26643 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 241.167-15 chr9 96767897 96768421 + 0.833333 NA intron (NM_001314060, intron 2 of 4) L1MB7|LINE|L1 9928 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 146.833-43 chr3 114660091 114660307 + 0.833333 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) -35254 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 182.167-20 chr2 35457705 35458003 + 0.833333 NA Intergenic L1M3|LINE|L1 -13551 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 248-5 chr18 12992929 12993468 + 0.833333 NA intron (NM_032142, intron 1 of 44) intron (NM_032142, intron 1 of 44) 1836 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 174.667-16 chr13 110882458 110882858 + 0.833333 NA intron (NR_104587, intron 6 of 6) intron (NR_104587, intron 6 of 6) -12350 NR_027701 283487 Hs.245390 NM_178514 ENSG00000255874 LINC00346 C13orf29|NCRNA00346 long intergenic non-protein coding RNA 346 ncRNA 127.333-67 chr21 28598470 28598635 + 0.833333 NA Intergenic MER77|LTR|ERVL 59234 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 145.333-16 chr11 20779165 20779468 + 0.833333 NA intron (NM_201551, intron 2 of 18) LTR102_Mam|LTR|ERVL 109730 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 185.167-37 chr5 98451484 98451785 + 0.833333 NA Intergenic L1MA8|LINE|L1 -290395 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 119.667-82 chr5 104804789 104805005 + 0.833333 NA Intergenic L1PB4|LINE|L1 -294577 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 233.333-29 chr21 24385514 24386035 + 0.833333 NA Intergenic MLT-int|LTR|ERVL-MaLR -42966 NR_135519 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 162.333-20 chr14 68877465 68877770 + 0.833333 NA intron (NM_001102, intron 19 of 20) MIR|SINE|MIR -81374 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 176-10 chr15 63819122 63819521 + 0.833333 NA intron (NM_003922, intron 1 of 77) MIRc|SINE|MIR 14627 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 189.167-2 chr1 30591963 30592385 + 0.833333 NA Intergenic L1MB3|LINE|L1 -126598 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 117.333-51 chr2 187213017 187213236 + 0.833333 NA Intergenic L1PA13|LINE|L1 235126 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 129-104 chr9 98239768 98240119 + 0.833333 NA intron (NR_051978, intron 2 of 11) L1M4|LINE|L1 -10726 NR_106913 102465514 NR_106913 ENSG00000278412 MIR6854 hsa-mir-6854 microRNA 6854 ncRNA 200.667-32 chr20 45029343 45029755 + 0.833333 NA intron (NM_006282, intron 10 of 10) intron (NM_006282, intron 10 of 10) 63037 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 137-80 chr5 130093454 130093701 + 0.833333 NA intron (NM_175856, intron 2 of 2) MIRb|SINE|MIR 189112 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 137.667-64 chr22 46306981 46307183 + 0.833333 NA intron (NM_016426, intron 2 of 11) intron (NM_016426, intron 2 of 11) 10212 NM_016426 51512 Hs.386189 NM_016426 ENSG00000075218 GTSE1 B99 G2 and S-phase expressed 1 protein-coding 124.5-17 chr12 19671609 19671830 + 0.833333 NA Intergenic Intergenic 231120 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 149.833-33 chr4 124163380 124163794 + 0.833333 NA Intergenic Intergenic 389323 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 212.333-30 chr5 39755553 39755934 + 0.833333 NA Intergenic Intergenic 235312 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 319.667-9 chr3 40114317 40114886 + 0.833333 NA intron (NM_001284426, intron 1 of 14) intron (NM_001284426, intron 1 of 14) 14590 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 207.833-29 chr5 73516089 73516417 + 0.833333 NA Intergenic Intergenic 17828 NM_001207 689 Hs.591768 NM_001207 ENSG00000145741 BTF3 BETA-NAC|BTF3a|BTF3b|NACB basic transcription factor 3 protein-coding 136.833-68 chr7 54105478 54105728 + 0.833333 NA Intergenic Intergenic -225094 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 172.167-25 chr19 42005902 42006181 + 0.833333 NA intron (NM_002088, intron 15 of 18) intron (NM_002088, intron 15 of 18) -11811 NM_001256214 478 Hs.515427 NM_152296 ENSG00000105409 ATP1A3 AHC2|ATP1A1|CAPOS|DYT12|RDP ATPase Na+/K+ transporting subunit alpha 3 protein-coding 148.333-51 chr2 193043858 193044051 + 0.833333 NA Intergenic L1M5|LINE|L1 294109 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 116.667-6 chr1 195052285 195052531 + 0.833333 NA Intergenic Intergenic 1036307 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 177-48 chr4 58206195 58206457 + 0.833333 NA Intergenic Intergenic 330002 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 199-37 chr8 105016867 105017336 + 0.833333 NA Intergenic L3|LINE|CR1 -301337 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 204.5-38 chr7 75934399 75934830 + 0.833333 NA intron (NM_001367562, intron 2 of 16) MST-int|LTR|ERVL-MaLR -9169 NR_002955 677801 Hs.689708 NR_002955 ENSG00000201643 SNORA14A ACA14a small nucleolar RNA, H/ACA box 14A snoRNA 230-30 chr8 117788133 117788578 + 0.833333 NA Intergenic L1MEf|LINE|L1 132558 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 150.833-29 chr3 76556686 76556978 + 0.833333 NA Intergenic Intergenic -483267 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 303-4 chr18 63391777 63392350 + 0.833333 NA intron (NM_004869, intron 10 of 10) intron (NM_004869, intron 10 of 10) -24857 NM_002035 2531 Hs.74050 NM_002035 ENSG00000119537 KDSR DHSR|EKVP4|FVT1|SDR35C1 3-ketodihydrosphingosine reductase protein-coding 163.667-27 chr17 66039256 66039618 + 0.833333 NA intron (NM_001353129, intron 12 of 26) intron (NM_001353129, intron 12 of 26) 152455 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 185.667-38 chr4 88285599 88285944 + 0.833333 NA intron (NR_134237, intron 1 of 3) L2a|LINE|L2 841 NR_134238 105369192 Hs.733660 NR_134236 ENSG00000246375 PPM1K-DT - PPM1K divergent transcript ncRNA 242.167-12 chr20 42391815 42392179 + 0.833333 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -293486 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 138-50 chr2 41677614 41677847 + 0.833333 NA Intergenic AluSx4|SINE|Alu -199825 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 167.5-5 chr1 180537953 180538423 + 0.833333 NA Intergenic Intergenic -20786 NR_125716 148756 NR_125716 ENSG00000236719 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 237.833-16 chr6 46471693 46472168 + 0.833333 NA intron (NM_001251973, intron 1 of 4) intron (NM_001251973, intron 1 of 4) 19393 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 194.667-53 chr5 112986452 112986855 + 0.833333 NA intron (NM_152624, intron 2 of 10) intron (NM_152624, intron 2 of 10) 9855 NM_152624 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 260.5-11 chr2 49072486 49072872 + 0.833333 NA intron (NM_000145, intron 1 of 9) LTR106_Mam|LTR|LTR 13076 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 155.333-16 chr10 115172980 115173325 + 0.833333 NA intron (NM_207303, intron 8 of 28) intron (NM_207303, intron 8 of 28) 79787 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 265.833-12 chr6 130324384 130324805 + 0.833333 NA intron (NM_001258275, intron 1 of 13) intron (NM_001258275, intron 1 of 13) 41274 NM_001258275 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 244.167-6 chr14 27918104 27918682 + 0.833333 NA Intergenic LTR9B|LTR|ERV1 -245172 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 270.333-2 chr10 44495715 44496181 + 0.833333 NA Intergenic L1M4|LINE|L1 -110851 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 123.833-50 chr5 105019553 105019826 + 0.833333 NA Intergenic Intergenic -79785 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 134.333-43 chr16 78623032 78623514 + 0.833333 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 523619 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 138.5-48 chr22 38219395 38219691 + 0.833333 NA 3' UTR (NM_012264, exon 9 of 9) 3' UTR (NM_012264, exon 9 of 9) 5177 NR_132774 106635525 NR_132774 SNORA92 - small nucleolar RNA, H/ACA box 92 snoRNA 239.833-19 chr7 8075730 8076316 + 0.833333 NA intron (NM_138426, intron 6 of 7) intron (NM_138426, intron 6 of 7) 107227 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 124.167-93 chr8 136172187 136172365 + 0.833333 NA Intergenic Intergenic -358522 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 178-74 chrX 51255836 51256049 + 0.833333 NA Intergenic L1MEc|LINE|L1 -76289 NM_153183 170685 Hs.375178 NM_153183 ENSG00000122824 NUDT10 APS2|DIPP3-alpha|DIPP3a nudix hydrolase 10 protein-coding 130.167-53 chr3 149449102 149449295 + 0.833333 NA Intergenic Intergenic -25499 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 231.167-29 chr6 152011556 152011988 + 0.833333 NA exon (NM_001291241, exon 6 of 9) exon (NM_001291241, exon 6 of 9) 156515 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 141.833-3 chr1 208751104 208751396 + 0.833333 NA Intergenic MER5B|DNA|hAT-Charlie 22562 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 200-41 chr2 228029651 228030123 + 0.833333 NA intron (NM_030623, intron 3 of 10) intron (NM_030623, intron 3 of 10) 151758 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 128-75 chr5 124311191 124311445 + 0.833333 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 127202 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 128.333-3 chr1 48893085 48893293 + 0.833333 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -116220 NM_001349795 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 138.833-19 chr13 93128541 93128763 + 0.833333 NA Intergenic Intergenic 83311 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 176.667-79 chr8 131289050 131289285 + 0.833333 NA Intergenic Intergenic -248258 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 248.833-6 chr15 101217117 101217586 + 0.833333 NA intron (NM_014918, intron 2 of 2) L1MC3|LINE|L1 34697 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 173.167-10 chr12 43206872 43207278 + 0.833333 NA Intergenic Intergenic 51760 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 145-26 chr14 57261339 57261568 + 0.833333 NA intron (NM_006544, intron 1 of 17) intron (NM_006544, intron 1 of 17) 7452 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 128.833-14 chr10 16930634 16930973 + 0.833333 NA intron (NM_001081, intron 40 of 66) intron (NM_001081, intron 40 of 66) -113349 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 190.333-44 chr4 181374877 181375163 + 0.833333 NA Intergenic Intergenic -109991 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 133.333-52 chr2 44426373 44426534 + 0.833333 NA intron (NM_024766, intron 3 of 10) L1P4|LINE|L1 64506 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 283.667-11 chr2 56692276 56692808 + 0.833333 NA Intergenic L1PREC2|LINE|L1 -506772 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 147.167-34 chr2 176704574 176704803 + 0.833333 NA Intergenic Intergenic 66934 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 213.167-32 chr8 104782809 104783193 + 0.833333 NA Intergenic Intergenic -193977 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 184-51 chr5 108060182 108060741 + 0.833333 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 321637 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 165.167-6 chr10 93724722 93725047 + 0.833333 NA Intergenic Intergenic -21925 NM_001347714 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 163.667-51 chr3 146185914 146186123 + 0.833333 NA Intergenic LTR79|LTR|ERVL -24523 NM_000935 5352 Hs.477866 NM_000935 ENSG00000152952 PLOD2 BRKS2|LH2|TLH procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding 191.167-13 chr2 41047261 41047711 + 0.833333 NA Intergenic Intergenic -535051 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 136-88 chr9 78987988 78988233 + 0.833333 NA Intergenic Intergenic 157556 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 139-74 chr7 100163594 100163772 + 0.833333 NA intron (NM_024637, intron 3 of 3) AluJo|SINE|Alu 4934 NM_024637 79690 Hs.44856 NM_024637 ENSG00000197093 GAL3ST4 GAL3ST-4 galactose-3-O-sulfotransferase 4 protein-coding 197.834-12 chr8 109292470 109293102 + 0.833333 NA intron (NM_032869, intron 4 of 9) intron (NM_032869, intron 4 of 9) 37147 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 145-25 chr13 72033161 72033377 + 0.833333 NA Intergenic L1MEg|LINE|L1 -166065 NM_001366712 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 238-14 chr20 13752013 13752692 + 0.833333 NA intron (NM_001276380, intron 9 of 13) MIR|SINE|MIR 32534 NM_016649 51575 Hs.369284 NM_016649 ENSG00000089048 ESF1 ABTAP|C20orf6|HDCMC28P|bA526K24.1 ESF1 nucleolar pre-rRNA processing protein homolog protein-coding 123.167-16 chr11 23497227 23497465 + 0.833333 NA Intergenic Intergenic -78156 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 208.833-18 chr19 28635293 28635567 + 0.833333 NA intron (NR_110759, intron 5 of 9) L1PA17|LINE|L1 28742 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 225.833-13 chr5 11498614 11499061 + 0.833333 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 90080 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 278.333-6 chr14 32730818 32731177 + 0.833333 NA intron (NM_004274, intron 9 of 13) intron (NM_004274, intron 9 of 13) -207882 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 156.833-12 chr11 39508132 39508454 + 0.833333 NA Intergenic Intergenic 784837 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 123.167-69 chr4 31573706 31573955 + 0.833333 NA Intergenic Intergenic 67286 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 116.5-17 chr14 47411943 47412200 + 0.833333 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -68825 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 243.5-21 chr4 103133541 103133861 + 0.833333 NA exon (NM_001286734, exon 39 of 47) exon (NM_001286734, exon 39 of 47) -33867 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 145.5-13 chr12 79169146 79169479 + 0.833333 NA intron (NM_005639, intron 3 of 10) intron (NM_005639, intron 3 of 10) 123620 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 294.833-2 chr18 6709906 6710415 + 0.833333 NA Intergenic Intergenic -19556 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 115.167-14 chr1 219245272 219245802 + 0.833333 NA Intergenic Intergenic 70568 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 158.5-47 chr21 23314332 23314661 + 0.833333 NA Intergenic MIR|SINE|MIR 70339 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 157.833-5 chr1 218770868 218771087 + 0.833333 NA intron (NR_031644, intron 4 of 6) MIRc|SINE|MIR 147534 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 224.667-11 chr14 45571235 45571674 + 0.833333 NA Intergenic FLAM_C|SINE|Alu 144148 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 191.833-18 chr3 56133771 56134040 + 0.833333 NA intron (NR_132749, intron 6 of 17) intron (NR_132749, intron 6 of 17) -281311 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 144.167-3 chr1 79632218 79632477 + 0.833333 NA Intergenic L1MB1|LINE|L1 -625617 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 296.667-14 chr6 166021694 166022201 + 0.833333 NA Intergenic L1ME1|LINE|L1 -33908 NR_026861 90632 Hs.31917 NR_026860 ENSG00000112541 LINC00473 C6orf176|LNC473|bA142J11.1 long intergenic non-protein coding RNA 473 ncRNA 205-29 chr3 131714339 131714705 + 0.833333 NA intron (NM_130808, intron 3 of 15) intron (NM_130808, intron 3 of 15) -211551 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 174.333-10 chr11 112568547 112569098 + 0.833333 NA Intergenic L1MEf|LINE|L1 -13020 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 155-74 chr8 74196131 74196725 + 0.833333 NA Intergenic Intergenic 124933 NM_001363050 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 119-65 chr3 120092235 120092486 + 0.833333 NA intron (NM_002093, intron 1 of 11) intron (NM_002093, intron 1 of 11) 2087 NM_002093 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 240.667-41 chr7 19387491 19388015 + 0.833333 NA Intergenic L1M2|LINE|L1 -242332 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 188.5-35 chr2 186188601 186188936 + 0.833333 NA Intergenic Intergenic -102451 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 143-55 chr4 62977524 62977878 + 0.833333 NA Intergenic LTR17|LTR|ERV1 -815936 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 142.667-38 chr18 4053000 4053172 + 0.833333 NA intron (NM_001242761, intron 2 of 11) THE1C-int|LTR|ERVL-MaLR 90733 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 187.333-79 chr8 134162652 134162984 + 0.833333 NA Intergenic Intergenic 276322 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 162.667-8 chr10 120985705 120986014 + 0.833333 NA Intergenic Intergenic 134497 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 132.167-54 chr4 181994142 181994462 + 0.833333 NA Intergenic Intergenic 150213 NR_027107 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 135.333-31 chr17 65429543 65429935 + 0.833333 NA Intergenic Intergenic -27802 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 134-83 chr4 112007837 112008027 + 0.833333 NA Intergenic Intergenic -137522 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 122.667-15 chr11 101960031 101960257 + 0.833333 NA intron (NM_001363543, intron 6 of 11) L1MEf|LINE|L1 -43622 NM_178127 253935 Hs.318370 NM_178127 ENSG00000187151 ANGPTL5 - angiopoietin like 5 protein-coding 139-71 chr7 37830607 37831052 + 0.833333 NA Intergenic Intergenic -17768 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 152.5-35 chr3 63777421 63777608 + 0.833333 NA Intergenic Intergenic -41785 NM_001355236 132200 Hs.506386 NM_001355236 ENSG00000163632 C3orf49 - chromosome 3 open reading frame 49 protein-coding 149-24 chr13 27687034 27687216 + 0.833333 NA Intergenic L1M4b|LINE|L1 65233 NM_015972 51082 Hs.507584 NM_015972 ENSG00000186184 POLR1D AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2 RNA polymerase I and III subunit D protein-coding 204.667-21 chr13 64780276 64780554 + 0.833333 NA Intergenic L2a|LINE|L2 -704404 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 169.667-48 chr20 44442115 44442359 + 0.833333 NA Intergenic AluJo|SINE|Alu 8320 NR_109893 101927242 Hs.143307 NR_109893 ENSG00000168746 LINC01430 - long intergenic non-protein coding RNA 1430 ncRNA 148.833-7 chr10 101797073 101797360 + 0.833333 NA intron (NM_012215, intron 10 of 15) intron (NM_012215, intron 10 of 15) -13803 NM_006993 10360 Hs.90691 NM_006993 ENSG00000107833 NPM3 PORMIN|TMEM123 nucleophosmin/nucleoplasmin 3 protein-coding 173.167-17 chr18 1136491 1136828 + 0.833333 NA Intergenic L1MB8|LINE|L1 -208666 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 181.5-60 chr8 77665808 77666189 + 0.833333 NA Intergenic Intergenic 215301 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 165-43 chr5 25769301 25769659 + 0.833333 NA Intergenic LTR40b|LTR|ERVL 578527 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 149.667-26 chr15 98855329 98855525 + 0.833333 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 71001 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 165.333-65 chr7 89044414 89044812 + 0.833333 NA intron (NM_181646, intron 1 of 3) THE1C-int|LTR|ERVL-MaLR -248876 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 136.5-94 chr8 128465777 128466151 + 0.833333 NA intron (NR_121672, intron 2 of 7) MLT1H|LTR|ERVL-MaLR 98715 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 225.667-7 chr13 107995876 107996271 + 0.833333 NA Intergenic L1M1|LINE|L1 -128577 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 216.5-18 chr2 212301051 212301333 + 0.833333 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 125168 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 166.833-22 chr2 37241087 37241393 + 0.833333 NA intron (NR_146408, intron 4 of 10) intron (NR_146408, intron 4 of 10) 9582 NM_001083946 55471 Hs.433466 NM_018607 ENSG00000003509 NDUFAF7 C2orf56|MidA|PRO1853 NADH:ubiquinone oxidoreductase complex assembly factor 7 protein-coding 203.167-6 chr10 114705903 114706269 + 0.833333 NA intron (NM_001322886, intron 1 of 20) intron (NM_001322886, intron 1 of 20) -21083 NM_001322882 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 268.833-8 chr2 143673611 143674350 + 0.833333 NA intron (NM_018460, intron 12 of 13) L1ME2|LINE|L1 -263087 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 235-22 chr22 42266954 42267399 + 0.833333 NA intron (NM_005650, intron 1 of 5) AluSp|SINE|Alu -2577 NR_036498 388906 Hs.730075 NR_036498 OGFRP1 - opioid growth factor receptor pseudogene 1 pseudo 157.167-24 chr14 69288837 69289259 + 0.833333 NA intron (NM_020692, intron 1 of 15) AluJr4|SINE|Alu 28890 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 140.333-25 chr15 98628505 98628773 + 0.833333 NA Intergenic Intergenic -19900 NM_001291858 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 122.833-10 chr10 60791447 60791702 + 0.833333 NA intron (NM_001786, intron 5 of 7) intron (NM_001786, intron 5 of 7) 13096 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 181.333-45 chr5 19298256 19298555 + 0.833333 NA Intergenic Intergenic 587867 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 144.833-28 chr18 12852991 12853387 + 0.833333 NA intron (NM_080423, intron 2 of 8) AluJr|SINE|Alu -12227 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 146.333-22 chr12 7235936 7236364 + 0.833333 NA Intergenic L1M4|LINE|L1 45788 NM_000319 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 323.167-5 chr8 87854182 87854835 + 0.833333 NA Intergenic L1ME1|LINE|L1 19507 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 269.833-7 chr12 96800081 96800646 + 0.833333 NA intron (NM_001306084, intron 63 of 67) intron (NM_001306084, intron 63 of 67) -106894 NM_152905 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 145.5-90 chr9 123024736 123024970 + 0.833333 NA intron (NM_012197, intron 13 of 25) intron (NM_012197, intron 13 of 25) -8790 NM_005294 2844 Hs.722039 NM_005294 ENSG00000011454 GPR21 - G protein-coupled receptor 21 protein-coding 193.5-22 chr18 77450489 77451017 + 0.833333 NA Intergenic L1M2|LINE|L1 200905 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 116.167-2 chr1 68457064 68457505 + 0.833333 NA Intergenic L1MEc|LINE|L1 -7330 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 302-19 chr3 63197328 63197813 + 0.833333 NA Intergenic Intergenic -80738 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 189.5-40 chr3 177961927 177962455 + 0.833333 NA Intergenic Intergenic 145326 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 166.167-2 chr1 150253459 150253990 + 0.833333 NA Intergenic AluJo|SINE|Alu -4050 NM_012113 23632 Hs.528988 NM_012113 ENSG00000118298 CA14 CAXiV carbonic anhydrase 14 protein-coding 164.667-38 chr2 148727857 148728208 + 0.833333 NA intron (NM_015630, intron 2 of 13) AluJb|SINE|Alu 83281 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 198.667-33 chr22 25865563 25866138 + 0.833333 NA intron (NM_001318245, intron 21 of 43) intron (NM_001318245, intron 21 of 43) 123662 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 144.333-82 chr7 91545480 91545803 + 0.833333 NA Intergenic Intergenic 281208 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 115.667-40 chr17 66215654 66215956 + 0.833333 NA intron (NM_000042, intron 6 of 7) intron (NM_000042, intron 6 of 7) 13610 NM_000042 350 Hs.445358 NM_000042 ENSG00000091583 APOH B2G1|B2GP1|BG apolipoprotein H protein-coding 134.167-44 chr2 82081525 82081781 + 0.833333 NA Intergenic MER89-int|LTR|ERV1 -614707 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 133.167-66 chr8 61989404 61989694 + 0.833333 NA Intergenic L1MA8|LINE|L1 99710 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 398.167 chr8 81606899 81607743 + 0.833333 NA intron (NR_146081, intron 7 of 7) L1MC4|LINE|L1 23956 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 183-4 chr10 39306571 39306963 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 610171 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 173.167-29 chr4 57337704 57337981 + 0.833333 NA Intergenic Intergenic -88030 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 194.833-20 chr4 41588208 41588579 + 0.833333 NA intron (NM_001330786, intron 1 of 22) intron (NM_001330786, intron 1 of 22) -24316 NM_001112719 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 206.333-21 chr3 124255547 124256020 + 0.833333 NA intron (NM_001024660, intron 3 of 59) intron (NM_001024660, intron 3 of 59) -118549 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 238.667-25 chr5 4334663 4335297 + 0.833333 NA Intergenic Intergenic -438501 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 171.167-19 chr15 56211284 56211597 + 0.833333 NA intron (NM_001370561, intron 4 of 11) L1MC1|LINE|L1 -21508 NM_001368074 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 276.5-4 chr14 23108852 23109287 + 0.833333 NA Intergenic AluJr|SINE|Alu -4080 NM_001354640 100128908 Hs.578287 NM_001354640 ENSG00000283654 LMLN2 - leishmanolysin like peptidase 2 protein-coding 371.5-2 chr2 202443690 202444393 + 0.833333 NA intron (NM_001204, intron 1 of 12) MER20|DNA|hAT-Charlie 67714 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 177.5-21 chr13 26327709 26327988 + 0.833333 NA intron (NM_001318368, intron 1 of 12) AluSx1|SINE|Alu 73719 NM_001346501 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 145.667-80 chr5 23449650 23449880 + 0.833333 NA Intergenic Intergenic -57844 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 245-14 chr21 31808779 31809102 + 0.833333 NA Intergenic MSTD|LTR|ERVL-MaLR -64080 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 210.333-7 chr11 113023241 113023553 + 0.833333 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -59937 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 158.667-5 chr1 170538390 170538676 + 0.833333 NA intron (NM_001320252, intron 3 of 6) Tigger19a|DNA|TcMar-Tigger -5924 NR_125958 101928650 Hs.676662 NR_125958 GORAB-AS1 - GORAB antisense RNA 1 ncRNA 163.333-31 chr16 85007790 85008187 + 0.833333 NA intron (NM_001145548, intron 1 of 8) AluJo|SINE|Alu 3547 NM_001145548 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 207.333-44 chr6 47043308 47043690 + 0.833333 NA Intergenic L4_B_Mam|LINE|RTE-X -1167 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 187.333-2 chr1 119495737 119495986 + 0.833333 NA Intergenic Intergenic -11342 NM_001328615 3283 Hs.364941 NM_000862 ENSG00000203857 HSD3B1 3BETAHSD|HSD3B|HSDB3|HSDB3A|SDR11E1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 protein-coding 169-35 chr3 107253709 107253991 + 0.833333 NA intron (NR_028302, intron 1 of 3) intron (NR_028302, intron 1 of 3) 13158 NR_028301 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 138.833-47 chr20 45132386 45132626 + 0.833333 NA Intergenic L1MA8|LINE|L1 -8041 NM_080869 128488 Hs.352180 NM_080869 ENSG00000168703 WFDC12 C20orf122|SWAM2|WAP2|dJ211D12.4 WAP four-disulfide core domain 12 protein-coding 199.5-49 chrX 86915463 86915730 + 0.833333 NA Intergenic Intergenic -602206 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 113.5-80 chr6 154125106 154125469 + 0.833333 NA non-coding (NR_104348, exon 5 of 5) non-coding (NR_104348, exon 5 of 5) 35525 NM_001285527 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 230-14 chr2 164293916 164294402 + 0.833333 NA Intergenic L1PA7|LINE|L1 274336 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 114.167-79 chr5 36081301 36081677 + 0.833333 NA Intergenic L1M4a2|LINE|L1 -14607 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 226.667-20 chr3 151766978 151767346 + 0.833333 NA intron (NR_110202, intron 2 of 3) AluSg|SINE|Alu -3294 NR_026915 201651 Hs.383050 NR_026915 ENSG00000240602 AADACP1 - arylacetamide deacetylase pseudogene 1 pseudo 221.833-5 chr12 23761794 23762358 + 0.833333 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) -177490 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 210.333-5 chr10 14714080 14714436 + 0.833333 NA intron (NM_031453, intron 1 of 4) LTR81A|LTR|Gypsy 60639 NM_001282695 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 153.667-43 chr2 208473920 208474217 + 0.833333 NA intron (NM_005048, intron 9 of 12) MIRb|SINE|MIR 67238 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 217.333 chr1 227105658 227106118 + 0.833333 NA intron (NM_001366019, intron 14 of 36) L1MB4|LINE|L1 165594 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 134.667-93 chr6 69052371 69052696 + 0.833333 NA intron (NM_001704, intron 15 of 31) intron (NM_001704, intron 15 of 31) 417251 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 315.5-4 chr4 40938005 40938448 + 0.833333 NA intron (NM_001166050, intron 7 of 17) intron (NM_001166050, intron 7 of 17) -81034 NM_001166053 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 241.667-36 chr7 131149161 131149757 + 0.833333 NA intron (NM_001145354, intron 2 of 18) intron (NM_001145354, intron 2 of 18) 39365 NM_001145354 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 208.333-38 chr6 72709558 72709969 + 0.833333 NA intron (NM_001160132, intron 1 of 13) L2a|LINE|L2 79268 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 179-19 chr2 14662996 14663513 + 0.833333 NA Intergenic Intergenic 30537 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 168.667-35 chr2 116646791 116647068 + 0.833333 NA Intergenic Intergenic -1167762 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 151-77 chr8 86025808 86026043 + 0.833333 NA Intergenic AluJb|SINE|Alu 43743 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 248-11 chr20 59901085 59901600 + 0.833333 NA intron (NM_014258, intron 16 of 44) intron (NM_014258, intron 16 of 44) 32295 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 238.667-3 chr11 108894517 108894870 + 0.833333 NA intron (NM_004398, intron 16 of 17) intron (NM_004398, intron 16 of 17) 229624 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 223.167-12 chr8 118863849 118864173 + 0.833333 NA Intergenic L1MC4|LINE|L1 87874 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 166.333-14 chr11 43524817 43525174 + 0.833333 NA Intergenic Intergenic -34661 NR_031577 100313777 NR_031577 ENSG00000211568 MIR670 hsa-mir-670 microRNA 670 ncRNA 139.167-29 chr16 73681628 73681872 + 0.833333 NA Intergenic Intergenic 294945 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 125.333-17 chr10 51016851 51017073 + 0.833333 NA intron (NM_001098512, intron 1 of 17) AluSc|SINE|Alu 26074 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 193.833-35 chr7 4517192 4517577 + 0.833333 NA Intergenic L1M4c|LINE|L1 -164911 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 155.833-10 chr10 57124640 57124940 + 0.833333 NA Intergenic Intergenic 179769 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 114.333-101 chr5 42272708 42273189 + 0.833333 NA Intergenic Intergenic -97603 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 140.167-13 chr12 30664123 30664329 + 0.833333 NA intron (NM_006390, intron 13 of 24) intron (NM_006390, intron 13 of 24) 13018 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 147.5-32 chr15 24076985 24077312 + 0.833333 NA intron (NR_126392, intron 4 of 5) L1MC3|LINE|L1 92800 NR_152824 791115 Hs.560378 NR_026647 ENSG00000260551 PWRN2 NCRNA00199 Prader-Willi region non-protein coding RNA 2 ncRNA 142.167-47 chr20 10235270 10235472 + 0.833333 NA intron (NM_001322903, intron 2 of 8) Charlie4a|DNA|hAT-Charlie -15865 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 149.167-17 chr14 35817117 35817390 + 0.833333 NA Intergenic HSMAR2|DNA|TcMar-Mariner -7958 NM_001346247 253959 Hs.113150 NM_014990 ENSG00000174373 RALGAPA1 GARNL1|GRIPE|RalGAPalpha1|TULIP1|p240 Ral GTPase activating protein catalytic alpha subunit 1 protein-coding 206.167-17 chr3 99429803 99430191 + 0.833333 NA Intergenic Intergenic -208597 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 190-44 chr4 37505112 37505435 + 0.833333 NA intron (NM_001104629, intron 1 of 3) L1M1|LINE|L1 51348 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 219-18 chr3 105440578 105440840 + 0.833333 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 73800 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 190.333-28 chr18 60283943 60284300 + 0.833333 NA Intergenic Intergenic 88654 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 188.667-39 chr4 72377023 72377297 + 0.833333 NA intron (NM_014243, intron 4 of 21) MamRep38|DNA|hAT 192061 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 193.167-9 chr10 84625245 84625633 + 0.833333 NA Intergenic Intergenic 200270 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 123.333-50 chr2 58061118 58061331 + 0.833333 NA intron (NM_001288836, intron 3 of 13) intron (NM_001288836, intron 3 of 13) 14512 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 176.667-83 chr9 33171657 33172096 + 0.833333 NA intron (NR_108108, intron 1 of 3) MLT1G1|LTR|ERVL-MaLR 4017 NR_108108 101929639 Hs.545818 NR_108108 ENSG00000233554 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 156.167-4 chr10 29190852 29191219 + 0.833333 NA Intergenic (CACA)n|Simple_repeat|Simple_repeat -98035 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 198.833-19 chr3 709655 710140 + 0.833333 NA intron (NR_110118, intron 1 of 3) intron (NR_110118, intron 1 of 3) 117792 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 140-22 chr14 52878056 52878466 + 0.833333 NA intron (NM_006832, intron 7 of 14) intron (NM_006832, intron 7 of 14) 72789 NM_006832 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 445 chr15 99216051 99217138 + 0.833333 NA intron (NR_109947, intron 7 of 12) L1ME5|LINE|L1 32987 NR_109947 64927 Hs.513195 NM_022905 ENSG00000103852 TTC23 HCC-8 tetratricopeptide repeat domain 23 protein-coding 124.5-12 chr11 28792990 28793226 + 0.833333 NA Intergenic L1PA8A|LINE|L1 -315560 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 133.5-66 chr6 153203077 153203284 + 0.833333 NA Intergenic L2a|LINE|L2 -71898 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 272.5-7 chr19 34569254 34569641 + 0.833333 NA Intergenic L1M5|LINE|L1 -24061 NR_146880 100129800 NR_146880 ZNF807 ZNF181P1|ZNF807P zinc finger protein 807 pseudo 172.167-20 chr16 11650718 11651121 + 0.833333 NA Intergenic Intergenic -17536 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 122.833-3 chr1 50586082 50586398 + 0.833333 NA intron (NM_007051, intron 9 of 18) intron (NM_007051, intron 9 of 18) -162797 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 220.833-7 chr17 5270750 5271291 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -11264 NM_001291581 9135 Hs.584784 NM_004703 ENSG00000029725 RABEP1 RAB5EP|RABPT5 rabaptin, RAB GTPase binding effector protein 1 protein-coding 114.5-36 chr15 90465077 90465319 + 0.833333 NA intron (NM_003870, intron 15 of 37) intron (NM_003870, intron 15 of 37) -64725 NM_022769 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 261.833-5 chr14 104222977 104223375 + 0.833333 NA promoter-TSS (NR_146611) promoter-TSS (NR_146611) -408 NR_146612 145195 Hs.534297 NR_146611 ENSG00000258913 LINC02691 C14orf144 long intergenic non-protein coding RNA 2691 ncRNA 293.5-11 chr5 113272289 113272761 + 0.833333 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 22413 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 121.667-31 chr15 87969166 87969562 + 0.833333 NA intron (NM_001320135, intron 12 of 15) intron (NM_001320135, intron 12 of 15) -23096 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 238.167-5 chr12 26289599 26289935 + 0.833333 NA Intergenic Intergenic 94194 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 192.167-7 chr11 11086348 11086610 + 0.833333 NA Intergenic L1MC5a|LINE|L1 228262 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 164.5-38 chr20 52483210 52483492 + 0.833333 NA Intergenic Intergenic -137487 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 141-33 chr17 54364520 54364756 + 0.833333 NA Intergenic Intergenic -536053 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 147-64 chr5 25265339 25265729 + 0.833333 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 74581 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 133-11 chr10 73304528 73304899 + 0.833333 NA intron (NM_001367801, intron 13 of 27) intron (NM_001367801, intron 13 of 27) 51972 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 163.833-2 chr1 59430738 59431048 + 0.833333 NA intron (NM_001350794, intron 5 of 14) intron (NM_001350794, intron 5 of 14) -84737 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 149.333-15 chr11 81633344 81633718 + 0.833333 NA Intergenic Intergenic 257305 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 139.833-11 chr11 23383099 23383408 + 0.833333 NA Intergenic L1M2|LINE|L1 35937 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 195.5-33 chr6 65410923 65411320 + 0.833333 NA intron (NM_198283, intron 4 of 9) intron (NM_198283, intron 4 of 9) 109703 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 192-45 chr7 90702234 90702511 + 0.833333 NA intron (NM_001287135, intron 2 of 14) intron (NM_001287135, intron 2 of 14) -7026 NM_012395 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 353.333-5 chr5 50828794 50829349 + 0.833333 NA intron (NM_024615, intron 21 of 25) intron (NM_024615, intron 21 of 25) 141116 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 144.667-23 chr11 106816284 106816613 + 0.833333 NA intron (NM_001256424, intron 4 of 8) L1MDb|LINE|L1 202028 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 150.333-48 chr17 79874310 79874750 + 0.833333 NA Intergenic L1MD2|LINE|L1 -35090 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 196-39 chr20 20070259 20070577 + 0.833333 NA intron (NM_015585, intron 2 of 26) MER81|DNA|hAT-Blackjack 13772 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 209.833-2 chr1 111240591 111240877 + 0.833333 NA intron (NM_001025199, intron 7 of 9) Tigger19a|DNA|TcMar-Tigger 10998 NM_001025199 1117 Hs.514840 NM_004000 ENSG00000064886 CHI3L2 CHIL2|YKL-39|YKL39 chitinase 3 like 2 protein-coding 223.667 chr1 84826958 84827504 + 0.833333 NA intron (NM_012152, intron 2 of 2) intron (NM_012152, intron 2 of 2) 65975 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 130.167-20 chr14 64110338 64110578 + 0.833333 NA intron (NM_015180, intron 65 of 114) L2a|LINE|L2 -15333 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 211.333-37 chr4 93063156 93063481 + 0.833333 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 758919 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 220.167-10 chr15 27314072 27314534 + 0.833333 NA intron (NM_001270873, intron 3 of 5) L1MB1|LINE|L1 -152984 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 129.5-55 chr20 44202558 44202795 + 0.833333 NA intron (NM_016470, intron 3 of 3) L1MEd|LINE|L1 8095 NM_016470 51526 Hs.75798 NM_016470 ENSG00000132823 OSER1 C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1 oxidative stress responsive serine rich 1 protein-coding 196.833-24 chr8 125012645 125013158 + 0.833333 NA intron (NM_003129, intron 7 of 10) L1MB7|LINE|L1 14396 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 170.5-66 chr7 28395011 28395458 + 0.833333 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) -17284 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 190.667-45 chr5 56207262 56207798 + 0.833333 NA intron (NM_024669, intron 2 of 11) Tigger3b|DNA|TcMar-Tigger 25800 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 159-21 chr14 55130224 55130531 + 0.833333 NA intron (NM_002306, intron 1 of 5) intron (NM_002306, intron 1 of 5) 1125 NM_001357678 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 165.667-52 chr4 94448845 94449119 + 0.833333 NA Intergenic Intergenic -2875 NM_001256425 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 182.5-39 chr8 27403031 27403571 + 0.833333 NA intron (NM_173175, intron 2 of 29) intron (NM_173175, intron 2 of 29) -30069 NR_106901 102465507 NR_106901 ENSG00000273836 MIR6842 hsa-mir-6842 microRNA 6842 ncRNA 156.333-41 chr17 74510715 74510989 + 0.833333 NA Intergenic L1M1|LINE|L1 20623 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 174.167-44 chrX 53610880 53611347 + 0.833333 NA intron (NM_031407, intron 23 of 83) intron (NM_031407, intron 23 of 83) -53839 NR_029484 406889 NR_029484 ENSG00000208012 MIRLET7F2 LET7F2|MIRNLET7F2|let-7f-2 microRNA let-7f-2 ncRNA 138.5-13 chr10 58808101 58808329 + 0.833333 NA intron (NM_001080512, intron 17 of 20) intron (NM_001080512, intron 17 of 20) 93200 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 154.333-54 chr4 39103412 39103705 + 0.833333 NA intron (NM_199039, intron 6 of 9) intron (NM_199039, intron 6 of 9) 41326 NM_199039 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 192.833-10 chr12 92745230 92745742 + 0.833333 NA exon (NM_001004330, exon 5 of 12) exon (NM_001004330, exon 5 of 12) 8997 NM_001004330 440107 Hs.591013 NM_001004330 ENSG00000187510 PLEKHG7 - pleckstrin homology and RhoGEF domain containing G7 protein-coding 163.167-38 chr6 25857569 25857877 + 0.833333 NA intron (NM_006632, intron 4 of 11) MIRb|SINE|MIR 16520 NM_001098486 10786 Hs.327179 NM_006632 ENSG00000124564 SLC17A3 GOUT4|NPT4|UAQTL4 solute carrier family 17 member 3 protein-coding 122.167-76 chr9 38656310 38656600 + 0.833333 NA Intergenic L1M5|LINE|L1 35367 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 129.667-98 chr7 80371143 80371345 + 0.833333 NA TTS (NR_110075) TTS (NR_110075) 3195 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 287.833-7 chr7 89928539 89929120 + 0.833333 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -190571 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 118.667-33 chr14 71954133 71954368 + 0.833333 NA intron (NM_001370288, intron 1 of 16) L1MCa|LINE|L1 20723 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 153.667-48 chr3 35525242 35525604 + 0.833333 NA Intergenic (TGTGTA)n|Simple_repeat|Simple_repeat -114102 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 187.333-9 chr10 57251086 57251419 + 0.833333 NA Intergenic LTR16|LTR|ERVL 53307 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 218.167-4 chr10 86523064 86523609 + 0.833333 NA Intergenic Intergenic -1544 NM_015045 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 128-81 chr6 119485291 119485602 + 0.833333 NA intron (NR_046100, intron 1 of 5) MER33|DNA|hAT-Charlie 5856 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 175-17 chr11 118089157 118089394 + 0.833333 NA intron (NM_001173552, intron 1 of 11) intron (NM_001173552, intron 1 of 11) -2312 NM_001354434 100526771 Hs.627426 NM_001354434 SMIM35 TMPRSS4-AS1 small integral membrane protein 35 protein-coding 232.333-23 chr4 70367173 70367914 + 0.833333 NA TTS (NM_012390) TTS (NM_012390) 6783 NM_012390 26952 Hs.701334 NM_012390 ENSG00000109208 SMR3A P-B1|PBI|PRL5|PROL5 submaxillary gland androgen regulated protein 3A protein-coding 195.667-6 chr10 3586300 3586730 + 0.833333 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) -83677 NR_155743 101927880 NR_155743 LINC02669 - long intergenic non-protein coding RNA 2669 ncRNA 166.333-38 chr2 98231047 98231412 + 0.833333 NA intron (NR_144297, intron 16 of 18) L1MD|LINE|L1 81696 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 170-47 chr3 59159812 59160036 + 0.833333 NA Intergenic Intergenic -109892 NM_001351533 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 139.333-53 chr20 25671619 25671854 + 0.833333 NA intron (NR_126465, intron 2 of 3) ERV3-16A3_I-int|LTR|ERVL 15203 NM_001290261 26152 Hs.61881 NM_015655 ENSG00000130684 ZNF337 - zinc finger protein 337 protein-coding 167-60 chr8 13429021 13429268 + 0.833333 NA intron (NM_024767, intron 2 of 4) MER5A|DNA|hAT-Charlie 85707 NM_182643 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 242-4 chr12 23750081 23750474 + 0.833333 NA intron (NM_152989, intron 7 of 17) MIRb|SINE|MIR -165691 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 138.5-87 chr8 139026136 139026350 + 0.833333 NA Intergenic Intergenic -112202 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 174-20 chr14 20463973 20464225 + 0.833333 NA Intergenic MIR3|SINE|MIR -2487 NM_144568 90809 Hs.7001 NM_144568 ENSG00000165782 PIP4P1 C14orf9|TMEM55B phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 protein-coding 148.333-89 chr7 1072817 1073134 + 0.833333 NA intron (NM_001134395, intron 2 of 4) L1M5|LINE|L1 -13832 NM_001039966 2852 Hs.20961 NM_001505 ENSG00000164850 GPER1 CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPER|GPR30|LERGU|LERGU2|LyGPR|mER G protein-coupled estrogen receptor 1 protein-coding 158.5-53 chr3 94611123 94611534 + 0.833333 NA Intergenic Intergenic -326935 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 192.167-28 chr3 20891370 20891833 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -514125 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 129.833-47 chr4 24938114 24938436 + 0.833333 NA intron (NM_173463, intron 1 of 12) intron (NM_173463, intron 1 of 12) -25297 NM_001330644 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 156-25 chr14 48169434 48169776 + 0.833333 NA Intergenic Intergenic -374591 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 261-26 chrX 155529802 155530343 + 0.833333 NA intron (NM_018196, intron 2 of 7) L1MA9|LINE|L1 63532 NR_039991 100507404 Hs.638368 NR_039991 ENSG00000224533 TMLHE-AS1 - TMLHE antisense RNA 1 ncRNA 127.667-59 chr3 112519970 112520167 + 0.833333 NA Intergenic Intergenic -20596 NM_001085357 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 118.667-11 chr1 211409483 211409890 + 0.833333 NA intron (NR_026761, intron 4 of 5) L1MB7|LINE|L1 26931 NR_026761 84791 Hs.523932 NM_032705 LINC00467 C1orf97 long intergenic non-protein coding RNA 467 ncRNA 233.833 chr1 208589100 208589640 + 0.833333 NA Intergenic Intergenic -139318 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 191.167-26 chr5 129959608 129959906 + 0.833333 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 55292 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 223.667-2 chr1 193411306 193411717 + 0.833333 NA Intergenic Intergenic 106766 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 341.5-7 chr5 112126410 112127092 + 0.833333 NA Intergenic L1MA3|LINE|L1 -33775 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 116.667-110 chr8 125558683 125558908 + 0.833333 NA Intergenic Intergenic 126586 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 192.5-38 chr4 51934715 51935037 + 0.833333 NA Intergenic LTR40c|LTR|ERVL 85487 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 229.833-17 chr5 61847349 61847664 + 0.833333 NA Intergenic L1MC1|LINE|L1 -111808 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 262.333-25 chr5 56175965 56176370 + 0.833333 NA exon (NM_024669, exon 4 of 12) exon (NM_024669, exon 4 of 12) 57163 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 276-9 chr2 11474313 11474804 + 0.833333 NA Intergenic Intergenic -8381 NM_001278277 1876 Hs.603093 NM_198256 ENSG00000169016 E2F6 E2F-6 E2F transcription factor 6 protein-coding 131.333-87 chr5 32270748 32271035 + 0.833333 NA exon (NM_001040446, exon 5 of 16) exon (NM_001040446, exon 5 of 16) 42048 NM_001294343 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 116.167-40 chr20 20447956 20448204 + 0.833333 NA intron (NM_020343, intron 37 of 39) intron (NM_020343, intron 37 of 39) 79976 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 185.833-26 chr3 192366833 192367156 + 0.833333 NA intron (NM_004113, intron 2 of 5) L3b|LINE|CR1 42055 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 155.667-10 chr1 207289437 207289763 + 0.833333 NA Intergenic Intergenic -32078 NM_001114752 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 130.833-13 chr12 103825133 103825386 + 0.833333 NA intron (NM_001031701, intron 1 of 13) intron (NM_001031701, intron 1 of 13) 15975 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 186.833-49 chr9 33892603 33892927 + 0.833333 NA intron (NM_017811, intron 2 of 4) MER5A|DNA|hAT-Charlie 41599 NM_001282530 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 119.833-45 chr2 174930081 174930509 + 0.833333 NA intron (NM_001025201, intron 4 of 12) MER54A|LTR|ERVL 74958 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 234.5-9 chr14 47866336 47866672 + 0.833333 NA Intergenic Intergenic -71490 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 192.334-5 chr4 61193771 61194324 + 0.833333 NA Intergenic HSMAR2|DNA|TcMar-Mariner -7183 NM_001322246 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 256.333-10 chr13 58845551 58846135 + 0.833333 NA Intergenic L1PB1|LINE|L1 -612726 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 175.167-27 chr19 57330380 57330722 + 0.833333 NA 3' UTR (NM_213598, exon 4 of 4) 3' UTR (NM_213598, exon 4 of 4) 10079 NM_213598 125919 Hs.202544 NM_213598 ENSG00000178229 ZNF543 - zinc finger protein 543 protein-coding 259-25 chr8 130403184 130403531 + 0.833333 NA intron (NM_001362925, intron 1 of 29) intron (NM_001362925, intron 1 of 29) 40303 NM_001362924 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 196.333-44 chr6 42424167 42424712 + 0.833333 NA intron (NM_001297573, intron 2 of 17) Tigger4b|DNA|TcMar-Tigger 27612 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 181.833-12 chr13 47357001 47357450 + 0.833333 NA Intergenic L1MA8|LINE|L1 -460149 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 142-94 chr8 138138126 138138461 + 0.833333 NA intron (NM_015912, intron 18 of 19) intron (NM_015912, intron 18 of 19) -54748 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 157-66 chr5 27652384 27652742 + 0.833333 NA Intergenic THE1C-int|LTR|ERVL-MaLR 180271 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 130.333-65 chr4 14678130 14678376 + 0.833333 NA intron (NR_126435, intron 3 of 6) intron (NR_126435, intron 3 of 6) 209916 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 237-7 chr12 39247564 39248092 + 0.833333 NA Intergenic AluSq|SINE|Alu 195292 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 285.333-7 chr2 199906853 199907364 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR -4185 NM_153689 205327 Hs.154494 NM_153689 ENSG00000178074 C2orf69 - chromosome 2 open reading frame 69 protein-coding 219.833-20 chr8 19136191 19136527 + 0.833333 NA Intergenic Intergenic 109163 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 204.667-27 chr18 67730276 67730553 + 0.833333 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) 84408 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 180.167-58 chr8 124353577 124353834 + 0.833333 NA intron (NM_194291, intron 1 of 6) L1MC4|LINE|L1 18994 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 153.167-22 chr18 13012754 13013065 + 0.833333 NA intron (NM_032142, intron 4 of 44) intron (NM_032142, intron 4 of 44) 21547 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 201.167 chr1 78787905 78788252 + 0.833333 NA Intergenic Intergenic 138247 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 349.167-5 chr7 122697671 122698270 + 0.833333 NA exon (NM_139175, exon 1 of 1) exon (NM_139175, exon 1 of 1) 1147 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 201.333-17 chr16 77357539 77358017 + 0.833333 NA intron (NM_199355, intron 8 of 22) intron (NM_199355, intron 8 of 22) 77256 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 270.167-8 chr18 3723038 3723418 + 0.833333 NA intron (NM_001308390, intron 4 of 10) MER58A|DNA|hAT-Charlie 119491 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 186.667-43 chr2 207932012 207932285 + 0.833333 NA intron (NM_001080475, intron 4 of 7) intron (NM_001080475, intron 4 of 7) 93379 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 271.167-15 chr6 68877146 68877634 + 0.833333 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 242108 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 242.667-35 chrX 56245129 56245592 + 0.833333 NA intron (NM_001324099, intron 1 of 3) intron (NM_001324099, intron 1 of 3) 12202 NM_001324100 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 199.167-13 chr14 50494887 50495213 + 0.833333 NA intron (NM_198794, intron 3 of 31) L1MB2|LINE|L1 37519 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 250.333-6 chr11 28879264 28879797 + 0.833333 NA Intergenic L1P1|LINE|L1 -401982 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 167.833-44 chr5 8546793 8547067 + 0.833333 NA Intergenic THE1C|LTR|ERVL-MaLR 86005 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 169.5 chr1 46959283 46959588 + 0.833333 NA Intergenic L1MA5A|LINE|L1 -1929 NM_001320289 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 230.667-10 chr17 67127088 67127527 + 0.833333 NA intron (NM_001330447, intron 24 of 32) L2a|LINE|L2 82753 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 168.5-54 chr5 113607561 113607865 + 0.833333 NA Intergenic HUERS-P3b-int|LTR|ERV1 94019 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 154.833-61 chr8 131299971 131300488 + 0.833333 NA Intergenic MSTA-int|LTR|ERVL-MaLR -259320 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 192.667-34 chr21 29848601 29848952 + 0.833333 NA intron (NM_000830, intron 1 of 16) (TA)n|Simple_repeat|Simple_repeat 91220 NM_001320621 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 156.833-51 chr6 141824556 141824816 + 0.833333 NA Intergenic Intergenic 264113 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 294-7 chr2 241320538 241321658 + 0.833333 NA intron (NM_001349291, intron 2 of 13) intron (NM_001349291, intron 2 of 13) 4933 NM_001321030 4735 Hs.721234 NM_004404 ENSG00000168385 SEPTIN2 DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|hNedd5 septin 2 protein-coding 203.833-20 chr4 100852991 100853261 + 0.833333 NA Intergenic L1MA6|LINE|L1 -178013 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 164.667-64 chr6 99337471 99337794 + 0.833333 NA intron (NR_144463, intron 3 of 5) HAL1b|LINE|L1 12042 NM_032511 84553 Hs.573245 NM_032511 ENSG00000146267 FAXC C6orf168|dJ273F20 failed axon connections homolog, metaxin like GST domain containing protein-coding 206.333-34 chr8 126109526 126109837 + 0.833333 NA Intergenic Intergenic -158484 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 179-3 chr1 58713269 58713559 + 0.833333 NA Intergenic L2a|LINE|L2 -13352 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 199.833-17 chr2 116077920 116078224 + 0.833333 NA Intergenic Intergenic 734257 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 209.5-30 chr4 39179691 39180020 + 0.833333 NA Intergenic MSTC|LTR|ERVL-MaLR -2674 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 151.167-47 chr6 20772754 20772961 + 0.833333 NA intron (NM_017774, intron 7 of 15) intron (NM_017774, intron 7 of 15) 238400 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 137-73 chr4 61562281 61562519 + 0.833333 NA intron (NM_001371343, intron 4 of 23) Tigger1|DNA|TcMar-Tigger 360228 NM_001371342 148.667-61 chr5 32514724 32514908 + 0.833333 NA Intergenic AluSz|SINE|Alu -70076 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 284.667-2 chr10 72719786 72720187 + 0.833333 NA intron (NR_073062, intron 3 of 9) AluJr|SINE|Alu -1043 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 236.333-17 chr2 209891341 209891849 + 0.833333 NA intron (NM_032504, intron 26 of 63) intron (NM_032504, intron 26 of 63) -110970 NM_001278286 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 242.667-32 chr9 27416104 27416456 + 0.833333 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -108034 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 153.667-67 chr6 48539166 48539457 + 0.833333 NA Intergenic Intergenic -470622 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 153.667-54 chr3 179208250 179208460 + 0.833333 NA intron (NM_006218, intron 6 of 20) intron (NM_006218, intron 6 of 20) 43260 NM_014407 27094 Hs.591285 NM_014407 ENSG00000171121 KCNMB3 BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3 potassium calcium-activated channel subfamily M regulatory beta subunit 3 protein-coding 213.833-19 chr20 11866700 11867050 + 0.833333 NA intron (NR_110635, intron 1 of 1) L1M5|LINE|L1 3840 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 198-53 chr6 135262162 135262635 + 0.833333 NA Intergenic MLT2D|LTR|ERVL 23238 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 191.333-25 chr3 159677733 159678078 + 0.833333 NA intron (NM_001197108, intron 1 of 6) FRAM|SINE|Alu 90707 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 121.5-39 chr15 33404302 33404546 + 0.833333 NA intron (NM_001243996, intron 1 of 102) MIRb|SINE|MIR 93457 NM_001036 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 152.667-75 chr6 84844537 84844818 + 0.833333 NA Intergenic L2a|LINE|L2 -80079 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 138.5-47 chr22 33455211 33455473 + 0.833333 NA intron (NM_133642, intron 6 of 14) Tigger13a|DNA|TcMar-Tigger -18673 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 144.833-26 chr17 61795139 61795433 + 0.833333 NA intron (NM_032043, intron 9 of 19) L1MA2|LINE|L1 68273 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 158.167-17 chr17 67905018 67905357 + 0.833333 NA intron (NM_182641, intron 9 of 27) AluSz|SINE|Alu 79684 NM_182641 2186 Hs.444200 NM_004459 ENSG00000171634 BPTF FAC1|FALZ|NEDDFL|NURF301 bromodomain PHD finger transcription factor protein-coding 172.667-64 chr5 26430186 26430595 + 0.833333 NA Intergenic MER74C|LTR|ERVL 608196 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 167-35 chr20 16700109 16700441 + 0.833333 NA Intergenic Intergenic -29751 NM_198220 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 170.833-44 chr6 106003286 106003603 + 0.833333 NA Intergenic Intergenic -82892 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 135.167-53 chr2 205333034 205333356 + 0.833333 NA intron (NM_205863, intron 18 of 21) MER33|DNA|hAT-Charlie -349305 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 131.833-75 chrX 91274762 91274956 + 0.833333 NA Intergenic HERVL40-int|LTR|ERVL -159980 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 183-23 chr2 69850766 69851063 + 0.833333 NA intron (NM_178439, intron 8 of 13) L1ME3F|LINE|L1 21254 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 177-68 chr8 69692623 69693088 + 0.833333 NA intron (NM_001146009, intron 4 of 7) Tigger3b|DNA|TcMar-Tigger 99955 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 133.333-48 chr2 9734925 9735166 + 0.833333 NA Intergenic Intergenic -104048 NM_006826 10971 Hs.74405 NM_006826 ENSG00000134308 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 167.167-15 chr10 117658422 117658720 + 0.833333 NA Intergenic L1ME2z|LINE|L1 -113503 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 213-23 chr20 52592895 52593426 + 0.833333 NA Intergenic MIR|SINE|MIR -27678 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 142.667-60 chr20 54386276 54386527 + 0.833333 NA Intergenic MIR3|SINE|MIR -89192 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 165.167-33 chr3 115402871 115403170 + 0.833333 NA Intergenic Intergenic -220490 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 113.5-48 chr2 61442072 61442226 + 0.833333 NA intron (NM_014709, intron 1 of 79) L1MA5A|LINE|L1 -24772 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 133.167-16 chr12 65482357 65482599 + 0.833333 NA intron (NR_120431, intron 3 of 3) L1ME3F|LINE|L1 74833 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 188.667-25 chr18 10926071 10926370 + 0.833333 NA intron (NM_022068, intron 3 of 51) intron (NM_022068, intron 3 of 51) -166571 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 117.5-68 chr7 38893667 38893821 + 0.833333 NA intron (NM_014396, intron 2 of 28) intron (NM_014396, intron 2 of 28) 15447 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 164.333-28 chr18 13702263 13702604 + 0.833333 NA intron (NM_001098801, intron 1 of 4) MER57-int|LTR|ERV1 24125 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 154.833-59 chr8 81882190 81882536 + 0.833333 NA Intergenic Intergenic -40077 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 114 chr1 38253367 38253600 + 0.833333 NA Intergenic Intergenic -38716 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 174-36 chr22 27977262 27977507 + 0.833333 NA TTS (NM_001145418) TTS (NM_001145418) -56772 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 136.5-2 chr1 63103295 63103581 + 0.833333 NA Intergenic Intergenic -90967 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 141-13 chr10 111028788 111029135 + 0.833333 NA Intergenic L1M1|LINE|L1 40035 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 220.5-23 chr3 69492134 69492831 + 0.833333 NA Intergenic Intergenic -106394 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 182.667-11 chr11 86615019 86615350 + 0.833333 NA intron (NM_001014811, intron 1 of 13) intron (NM_001014811, intron 1 of 13) 57014 NR_147831 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 126.667-25 chr15 86360480 86360673 + 0.833333 NA intron (NM_152336, intron 17 of 24) L1MA9|LINE|L1 -43608 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 346.5-2 chr17 58098165 58099044 + 0.833333 NA Intergenic L1MA5A|LINE|L1 15185 NM_080677 140735 Hs.720595 NM_080677 ENSG00000264364 DYNLL2 DNCL1B|Dlc2|RSPH22 dynein light chain LC8-type 2 protein-coding 236-18 chr4 37623118 37623499 + 0.833333 NA intron (NM_001085400, intron 6 of 6) intron (NM_001085400, intron 6 of 6) 39075 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 168.667-12 chr12 93720778 93721121 + 0.833333 NA intron (NR_110093, intron 2 of 2) L1MC1|LINE|L1 16874 NR_110093 101928731 Hs.659971 NR_110092 ENSG00000258274 LOC101928731 - uncharacterized LOC101928731 ncRNA 132.333-29 chr12 33311301 33311633 + 0.833333 NA Intergenic Intergenic 128352 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 146.833-28 chr2 59907729 59907956 + 0.833333 NA Intergenic Intergenic 475194 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 181-63 chr8 58989590 58989916 + 0.833333 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 129394 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 148.667-54 chr4 102866349 102866768 + 0.833333 NA intron (NM_181890, intron 1 of 7) intron (NM_181890, intron 1 of 7) 2335 NM_181893 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 234.333-13 chr17 60931011 60931440 + 0.833333 NA intron (NM_001330413, intron 13 of 25) intron (NM_001330413, intron 13 of 25) 253374 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 177.333-3 chr1 178270872 178271175 + 0.833333 NA intron (NM_170692, intron 1 of 17) HAL1|LINE|L1 -70428 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 140.167-77 chrX 141823180 141823504 + 0.833333 NA Intergenic MER66-int|LTR|ERV1 -14974 NM_138702 139081 Hs.356870 NM_138702 ENSG00000165509 MAGEC3 CT7.2|HCA2|MAGE-C3|MAGEC4 MAGE family member C3 protein-coding 186.5-43 chr20 22987287 22987823 + 0.833333 NA Intergenic Intergenic -47865 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 162.667-47 chr22 27186803 27187101 + 0.833333 NA promoter-TSS (NM_001318392) promoter-TSS (NM_001318392) -564 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 214.5-8 chr12 123456143 123456438 + 0.833333 NA Intergenic AluSg|SINE|Alu -1849 NR_104103 11066 Hs.632738 NM_007020 ENSG00000184209 SNRNP35 HM-1|U1SNRNPBP small nuclear ribonucleoprotein U11/U12 subunit 35 protein-coding 200.667-44 chr5 87850671 87851010 + 0.833333 NA Intergenic Intergenic 188798 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 119.5-86 chr6 35973832 35973986 + 0.833333 NA intron (NM_001193476, intron 10 of 19) intron (NM_001193476, intron 10 of 19) 50591 NM_138718 116369 Hs.435836 NM_052961 ENSG00000112053 SLC26A8 SPGF3|TAT1 solute carrier family 26 member 8 protein-coding 120-104 chr7 143133596 143133844 + 0.833333 NA intron (NM_002652, intron 1 of 3) intron (NM_002652, intron 1 of 3) 1643 NM_002652 5304 Hs.99949 NM_002652 ENSG00000159763 PIP GCDFP-15|GCDFP15|GPIP4 prolactin induced protein protein-coding 156.833-8 chr10 57174735 57174971 + 0.833333 NA Intergenic Intergenic 129706 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 181.167-38 chr9 109080706 109081372 + 0.833333 NA intron (NM_032012, intron 7 of 17) intron (NM_032012, intron 7 of 17) -34741 NR_029506 407036 NR_029506 ENSG00000207698 MIR32 MIRN32|hsa-mir-32|miR-32|miRNA32 microRNA 32 ncRNA 157.167-32 chr2 99783692 99783945 + 0.833333 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) -293801 NM_001321454 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 132.167-7 chr1 211604960 211605241 + 0.833333 NA Intergenic Intergenic -25939 NM_021194 7779 Hs.519469 NM_021194 ENSG00000170385 SLC30A1 ZNT1|ZRC1 solute carrier family 30 member 1 protein-coding 189-6 chr14 26699521 26699760 + 0.833333 NA intron (NR_147061, intron 2 of 6) MIR|SINE|MIR 100993 NR_147061 102725045 Hs.143441 NR_147061 LINC02588 C14orf22|NOVA1-AS1 long intergenic non-protein coding RNA 2588 ncRNA 186.833-19 chr18 45329065 45329293 + 0.833333 NA intron (NM_001371319, intron 4 of 23) intron (NM_001371319, intron 4 of 23) 116184 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 265.167-16 chr9 28171587 28171933 + 0.833333 NA intron (NM_152570, intron 5 of 6) AluY|SINE|Alu 547545 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 120.667-79 chr3 109794205 109794423 + 0.833333 NA Intergenic Intergenic 191486 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 206.834-7 chr17 33918272 33918903 + 0.833333 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 238219 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 165-55 chr7 55306507 55306859 + 0.833333 NA Intergenic Intergenic -51048 NR_110426 102725541 Hs.590524 NR_110426 ELDR Fabl|LINC01156 EGFR long non-coding downstream RNA ncRNA 141.667-45 chr2 25531284 25531564 + 0.833333 NA intron (NM_033147, intron 9 of 19) intron (NM_033147, intron 9 of 19) 118798 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 143.833-7 chr12 4567731 4568045 + 0.833333 NA intron (NM_001371301, intron 1 of 14) UCON105|Unknown|Unknown 5680 NM_001371301 153.833-55 chr6 129933661 129934166 + 0.833333 NA Intergenic Intergenic -72598 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 198-50 chr5 124143010 124143519 + 0.833333 NA intron (NR_125774, intron 4 of 5) L1MD1|LINE|L1 295256 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 223.833-14 chr16 53242010 53242295 + 0.833333 NA intron (NM_001352157, intron 11 of 37) L2a|LINE|L2 33701 NM_001352158 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 171.167-37 chr4 62551230 62551676 + 0.833333 NA Intergenic Intergenic -389688 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 367 chr2 139708113 139709034 + 0.833333 NA Intergenic Intergenic 811249 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 136-22 chr13 71253424 71253601 + 0.833333 NA Intergenic Intergenic 238371 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 126.667-78 chr5 112146414 112146578 + 0.833333 NA intron (NM_001347887, intron 22 of 23) intron (NM_001347887, intron 22 of 23) -14030 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 269.667-17 chr7 143236194 143236645 + 0.833333 NA intron (NM_001130026, intron 8 of 10) L1MA5|LINE|L1 14382 NM_176882 259286 Hs.352241 NM_176882 ENSG00000221937 TAS2R40 GPR60|T2R40|T2R58 taste 2 receptor member 40 protein-coding 139.167-57 chr4 32714699 32714955 + 0.833333 NA Intergenic LOR1-int|LTR|ERV1 363789 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 178.667-77 chrX 47916478 47916878 + 0.833333 NA 3' UTR (NM_007137, exon 5 of 5) 3' UTR (NM_007137, exon 5 of 5) 79776 NM_007137 347344 Hs.114246 NM_007137 ENSG00000197779 ZNF81 HFZ20|MRX45|dJ54B20.6 zinc finger protein 81 protein-coding 120.833-46 chr3 95613583 95613824 + 0.833333 NA Intergenic (TTACA)n|Simple_repeat|Simple_repeat 69490 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 192-18 chr18 22858987 22859275 + 0.833333 NA Intergenic L1MC5|LINE|L1 -72294 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 148.5-57 chr5 30890054 30890285 + 0.833333 NA Intergenic Intergenic -303517 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 187.5-18 chr16 3753623 3754128 + 0.833333 NA intron (NM_004380, intron 19 of 30) intron (NM_004380, intron 19 of 30) -36351 NM_001272049 10131 Hs.30345 NM_016292 ENSG00000126602 TRAP1 HSP 75|HSP75|HSP90L|TRAP-1 TNF receptor associated protein 1 protein-coding 126-67 chr4 107405511 107405664 + 0.833333 NA Intergenic Intergenic 314647 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 154.833-10 chr10 39190738 39190964 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 494255 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 184.667-49 chr8 30522644 30522951 + 0.833333 NA intron (NM_001008710, intron 5 of 8) intron (NM_001008710, intron 5 of 8) -115783 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 160-21 chr12 43327724 43327938 + 0.833333 NA Intergenic L1PA13|LINE|L1 172516 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 190-23 chr17 59795309 59795732 + 0.833333 NA intron (NM_001329400, intron 5 of 9) intron (NM_001329400, intron 5 of 9) -45746 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 154.667-49 chr4 31021516 31021772 + 0.833333 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -149500 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 173.667-15 chr13 43321045 43321391 + 0.833333 NA intron (NM_001347966, intron 12 of 17) MER5A|DNA|hAT-Charlie -127634 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 126.833-35 chr18 5882016 5882304 + 0.833333 NA Intergenic Intergenic 13794 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 269.5-4 chr12 87156779 87157266 + 0.833333 NA Intergenic Intergenic -173717 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 228-35 chr7 81728499 81728912 + 0.833333 NA intron (NM_001010932, intron 8 of 17) intron (NM_001010932, intron 8 of 17) -37299 NR_126025 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 167.167-5 chr1 116219370 116219698 + 0.833333 NA Intergenic MIRb|SINE|MIR 107779 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 197-20 chr18 6537636 6538127 + 0.833333 NA intron (NR_120518, intron 2 of 5) Arthur1|DNA|hAT-Tip100 26465 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 123.5-92 chrX 63013371 63013597 + 0.833333 NA Intergenic L1M3b|LINE|L1 337848 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 134.333-37 chr14 79749154 79749460 + 0.833333 NA intron (NR_073547, intron 18 of 20) intron (NR_073547, intron 18 of 20) -462112 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 115.5-34 chr14 54067104 54067297 + 0.833333 NA Intergenic Intergenic -110309 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 147.833-69 chr8 126943185 126943422 + 0.833333 NA Intergenic L1MB7|LINE|L1 -69851 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 199.167-45 chr8 87816856 87817342 + 0.833333 NA Intergenic Intergenic 56916 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 194.333-23 chr22 26268585 26268845 + 0.833333 NA intron (NM_001184776, intron 1 of 14) MER20|DNA|hAT-Charlie 99241 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 149.833-2 chr1 178814685 178814947 + 0.833333 NA intron (NM_152663, intron 6 of 19) L1ME3E|LINE|L1 56261 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 211.5-11 chr15 73609245 73609738 + 0.833333 NA intron (NM_012428, intron 1 of 8) AluSx1|SINE|Alu 23898 NM_001161363 27020 Hs.744867 NM_012428 ENSG00000156642 NPTN GP55|GP65|SDFR1|SDR1|np55|np65 neuroplastin protein-coding 124.667-24 chr12 28657971 28658263 + 0.833333 NA Intergenic Intergenic -467379 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 166.833-11 chr12 57113220 57113553 + 0.833333 NA Intergenic Intergenic -2024 NR_033659 6778 Hs.524518 NM_003153 ENSG00000166888 STAT6 D12S1644|IL-4-STAT|STAT6B|STAT6C signal transducer and activator of transcription 6 protein-coding 255-7 chr14 61638642 61639555 + 0.833333 NA intron (NR_039985, intron 1 of 2) Tigger2b_Pri|DNA|TcMar-Tigger -56415 NM_001530 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 193-26 chr2 106080190 106080511 + 0.833333 NA Intergenic L1MEd|LINE|L1 14662 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 179.833-36 chr9 91334021 91334423 + 0.833333 NA intron (NM_001698, intron 3 of 9) MLT2B1|LTR|ERVL 27702 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 217-7 chr15 70833656 70833957 + 0.833333 NA intron (NM_018357, intron 2 of 2) intron (NM_018357, intron 2 of 2) -19433 NM_001284357 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 139.833-9 chr10 117703233 117703470 + 0.833333 NA Intergenic L1ME3B|LINE|L1 -158283 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 183.667-84 chr9 31607279 31607660 + 0.833333 NA Intergenic Intergenic -225979 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 228-23 chr3 36107074 36107599 + 0.833333 NA Intergenic Intergenic -273151 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 174.333-55 chr6 154539195 154539650 + 0.833333 NA Intergenic Intergenic -28737 NM_001368117 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 157-58 chr3 101985865 101986250 + 0.833333 NA intron (NR_026934, intron 2 of 3) LTR16D|LTR|ERVL 45198 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 158.833-30 chr2 128579034 128579236 + 0.833333 NA Intergenic L2b|LINE|L2 -260267 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 125.667-70 chr22 16818048 16818343 + 0.833333 NA intron (NM_001318251, intron 1 of 3) intron (NM_001318251, intron 1 of 3) 3504 NM_001318251 150165 Hs.356069 NM_175878 ENSG00000172967 XKR3 XRG3|XTES XK related 3 protein-coding 122.5-51 chr2 179651230 179651533 + 0.833333 NA intron (NR_148056, intron 3 of 9) DNA1_Mam|DNA|TcMar 8813 NM_001352812 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 144.833-69 chr7 130850877 130851309 + 0.833333 NA Intergenic L1ME4c|LINE|L1 25717 NR_029503 407021 NR_029503 ENSG00000284032 MIR29A MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a microRNA 29a ncRNA 167-14 chr11 25530455 25530691 + 0.833333 NA Intergenic Intergenic -658550 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 141.667 chr1 32931818 32932100 + 0.833333 NA Intergenic Intergenic -30570 NM_001329724 113452 Hs.534521 NM_033504 ENSG00000121900 TMEM54 BCLP|CAC-1|CAC1 transmembrane protein 54 protein-coding 190.833 chr1 81244085 81244641 + 0.833333 NA Intergenic L1PA7|LINE|L1 -61829 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 196.667-39 chr3 175981891 175982268 + 0.833333 NA Intergenic Intergenic -205746 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 254.167-4 chr13 73697444 73697910 + 0.833333 NA intron (NM_007249, intron 7 of 7) intron (NM_007249, intron 7 of 7) 133433 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 140-70 chr6 100306476 100306763 + 0.833333 NA Intergenic Intergenic 157056 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 151.833-35 chr20 57549403 57549957 + 0.833333 NA Intergenic Intergenic -11430 NM_002591 5105 Hs.1872 NM_002591 ENSG00000124253 PCK1 PCKDC|PEPCK-C|PEPCK1|PEPCKC phosphoenolpyruvate carboxykinase 1 protein-coding 126.833-61 chr7 52726637 52726789 + 0.833333 NA Intergenic Intergenic -308920 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 148.167-64 chr5 100054918 100055169 + 0.833333 NA Intergenic Intergenic 333211 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 184.833-3 chr10 7997964 7998244 + 0.833333 NA intron (NM_031923, intron 4 of 6) intron (NM_031923, intron 4 of 6) 54387 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 244.5-13 chr2 34577139 34577498 + 0.833333 NA Intergenic MIR|SINE|MIR -100239 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 171-25 chr2 134881221 134881511 + 0.833333 NA intron (NR_036549, intron 1 of 4) intron (NR_036549, intron 1 of 4) 23546 NR_049856 100847069 NR_049856 ENSG00000263783 MIR5590 - microRNA 5590 ncRNA 262.667-16 chr19 31403343 31403832 + 0.833333 NA Intergenic Intergenic -54151 NM_020856 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 175.333-47 chr4 114530911 114531217 + 0.833333 NA Intergenic L1MA9|LINE|L1 -67338 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 113.333-36 chr14 34933682 34933869 + 0.833333 NA intron (NR_151701, intron 2 of 4) AluJo|SINE|Alu -6147 NR_002937 280655 Hs.639271 NR_002937 IGBP1P1 C14orf19 immunoglobulin (CD79A) binding protein 1 pseudogene 1 pseudo 260.333-18 chr7 46094964 46095485 + 0.833333 NA Intergenic L1MB7|LINE|L1 -173952 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 287.333-9 chr5 39294250 39294975 + 0.833333 NA intron (NM_001737, intron 9 of 10) L1MA5A|LINE|L1 -23963 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 226-26 chr7 40687063 40687374 + 0.833333 NA intron (NM_024728, intron 13 of 14) HAL1|LINE|L1 292721 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 137.167-62 chr7 52792768 52793057 + 0.833333 NA Intergenic Intergenic -242721 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 162.833-50 chr8 61657119 61657456 + 0.833333 NA intron (NM_032468, intron 4 of 14) Tigger3a|DNA|TcMar-Tigger 32524 NM_001164752 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 390-10 chr8 123761594 123762271 + 0.833333 NA Intergenic Intergenic -6507 NM_001317918 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 225-28 chr4 146681580 146682104 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR 42949 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 127.333-120 chr9 35505762 35506052 + 0.833333 NA intron (NM_001330740, intron 1 of 10) L1M4|LINE|L1 15796 NM_001330740 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 113.333-19 chr10 100602062 100602257 + 0.833333 NA Intergenic Intergenic 66216 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 subunit alpha inhibitor protein-coding 157.833-44 chr22 31422890 31423185 + 0.833333 NA intron (NM_004147, intron 5 of 8) MLT1B|LTR|ERVL-MaLR 23433 NM_004147 4733 Hs.115242 NM_004147 ENSG00000185721 DRG1 NEDD3 developmentally regulated GTP binding protein 1 protein-coding 116-35 chr16 79753362 79753636 + 0.833333 NA intron (NR_104663, intron 3 of 5) intron (NR_104663, intron 3 of 5) -16972 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 144.333 chr1 30960106 30960368 + 0.833333 NA intron (NM_001020658, intron 14 of 21) Tigger4a|DNA|TcMar-Tigger 8000 NR_003066 692200 NR_003066 SNORD103C HBII-251|SNORD85 small nucleolar RNA, C/D box 103C snoRNA 194.333-42 chr8 107800054 107800457 + 0.833333 NA Intergenic Intergenic 281684 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 205.167-2 chr1 169864027 169864532 + 0.833333 NA intron (NM_181093, intron 9 of 13) intron (NM_181093, intron 9 of 13) 29617 NM_020423 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 221.167-3 chr1 217783170 217783553 + 0.833333 NA intron (NM_138796, intron 8 of 10) intron (NM_138796, intron 8 of 10) 1759 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 247.333-16 chr3 187257511 187258036 + 0.833333 NA intron (NR_033519, intron 3 of 9) MER57B2|LTR|ERV1 -33499 NR_135551 101929130 NR_135551 ENSG00000283175 LOC101929130 - uncharacterized LOC101929130 ncRNA 155.833-27 chr2 77326505 77326886 + 0.833333 NA intron (NR_146416, intron 1 of 1) AluJr|SINE|Alu 195681 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 138.167-33 chr18 13015599 13015852 + 0.833333 NA intron (NM_032142, intron 6 of 44) intron (NM_032142, intron 6 of 44) 24363 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 226.333-13 chr16 82075126 82075468 + 0.833333 NA intron (NM_002153, intron 3 of 4) L1MA3|LINE|L1 40044 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 315.5-3 chr3 81092050 81092590 + 0.833333 NA intron (NR_132411, intron 1 of 1) intron (NR_132411, intron 1 of 1) 98452 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 245.334 chr1 44397444 44398114 + 0.833333 NA Intergenic Intergenic -7381 NM_001319956 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 128.5-83 chr8 132398106 132398481 + 0.833333 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 48969 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 135-44 chr2 187158695 187158938 + 0.833333 NA Intergenic Intergenic 289436 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 163.333-30 chr16 64229303 64229595 + 0.833333 NA Intergenic L1PA17|LINE|L1 892614 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 253.333-22 chr8 114130345 114131012 + 0.833333 NA Intergenic L1MA4A|LINE|L1 -693739 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 120.5-13 chr10 72898765 72898945 + 0.833333 NA exon (NM_152635, exon 2 of 9) exon (NM_152635, exon 2 of 9) 5116 NR_130125 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 213-7 chr11 81687296 81687712 + 0.833333 NA Intergenic L1ME1|LINE|L1 203332 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 249.667-5 chr10 67380636 67381108 + 0.833333 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 22538 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 156.167-3 chr10 19252742 19253186 + 0.833333 NA intron (NM_001142308, intron 18 of 39) intron (NM_001142308, intron 18 of 39) 204163 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 147.167-36 chr2 208087259 208087653 + 0.833333 NA Intergenic L2b|LINE|L2 -31673 NR_038437 100507443 Hs.570295 NR_038437 LOC100507443 - uncharacterized LOC100507443 ncRNA 117.5-21 chr18 2488735 2488906 + 0.833333 NA Intergenic Intergenic 82685 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 168-34 chr22 21579515 21579898 + 0.833333 NA intron (NR_046082, intron 1 of 3) AluJb|SINE|Alu 11992 NR_028436 7332 Hs.108104 NM_003347 ENSG00000185651 UBE2L3 E2-F1|L-UBC|UBCH7|UbcM4 ubiquitin conjugating enzyme E2 L3 protein-coding 245.5-2 chr1 98092435 98092962 + 0.833333 NA Intergenic Intergenic -43005 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 218-29 chr21 29793737 29794219 + 0.833333 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 45803 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 153.167-11 chr11 103569103 103569573 + 0.833333 NA Intergenic Intergenic -280568 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 119.167-55 chr20 63721377 63721581 + 0.833333 NA intron (NM_181485, intron 2 of 6) L1M4|LINE|L1 13451 NM_001195654 84619 Hs.590868 NM_032527 ENSG00000197114 ZGPAT GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP zinc finger CCCH-type and G-patch domain containing protein-coding 158.667-47 chr2 153395315 153395928 + 0.833333 NA Intergenic Intergenic 83141 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 186.167-19 chr14 50904267 50904643 + 0.833333 NA TTS (NM_001163940) TTS (NM_001163940) 32295 NM_181533 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 125.5-83 chr8 117692933 117693192 + 0.833333 NA Intergenic Intergenic 172349 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 165-20 chr15 69487589 69487954 + 0.833333 NA Intergenic Intergenic 34953 NM_001003 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 208.5-25 chr2 119195083 119195552 + 0.833333 NA Intergenic AluJo|SINE|Alu -28517 NM_018234 55240 Hs.647822 NM_018234 ENSG00000115107 STEAP3 AHMIO2|STMP3|TSAP6|dudlin-2|dudulin-2|pHyde STEAP3 metalloreductase protein-coding 180.167-48 chr6 122669053 122669444 + 0.833333 NA intron (NM_001270395, intron 1 of 4) intron (NM_001270395, intron 1 of 4) 16519 NM_001270395 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 195.167-27 chr4 158354762 158355334 + 0.833333 NA Intergenic Intergenic 144562 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 194.667-11 chr10 130128169 130128644 + 0.833333 NA Intergenic Intergenic -7969 NM_001199868 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 166.5-15 chr12 112488305 112488703 + 0.833333 NA exon (NM_002834, exon 12 of 16) exon (NM_002834, exon 12 of 16) 69557 NM_080601 5781 Hs.506852 NM_002834 ENSG00000179295 PTPN11 BPTP3|CFC|JMML|METCDS|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2 protein tyrosine phosphatase non-receptor type 11 protein-coding 186.833-8 chr12 54396849 54397102 + 0.833333 NA intron (NM_002205, intron 29 of 29) AluJo|SINE|Alu -5677 NM_001130968 25946 Hs.505653 NM_015481 ENSG00000161642 ZNF385A HZF|RZF|ZFP385|ZNF385 zinc finger protein 385A protein-coding 149.333-10 chr10 56825294 56825561 + 0.833333 NA Intergenic L1PB4|LINE|L1 -464154 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 161.5-7 chr11 81244202 81244540 + 0.833333 NA Intergenic Intergenic -481568 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 173-18 chr14 64548083 64548430 + 0.833333 NA Intergenic Intergenic -1705 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 146.833-55 chr6 161052238 161052440 + 0.833333 NA intron (NM_005922, intron 3 of 26) intron (NM_005922, intron 3 of 26) 60570 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 146.833-20 chr15 77195739 77196018 + 0.833333 NA intron (NM_024776, intron 4 of 7) intron (NM_024776, intron 4 of 7) 29526 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 195-34 chr3 159058704 159059076 + 0.833333 NA Intergenic Intergenic -10362 NM_001197100 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 244.5-29 chrX 92268049 92268472 + 0.833333 NA intron (NM_032968, intron 4 of 6) intron (NM_032968, intron 4 of 6) 432799 NM_032969 27328 Hs.655673 NM_014522 ENSG00000102290 PCDH11X PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119 protocadherin 11 X-linked protein-coding 161.833-23 chr2 235367555 235367937 + 0.833333 NA Intergenic L2|LINE|L2 -126297 NM_014914 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 164.667-31 chr17 61453063 61453546 + 0.833333 NA intron (NM_001321120, intron 1 of 8) intron (NM_001321120, intron 1 of 8) 882 NM_001321120 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 182.333-33 chr2 77983075 77983330 + 0.833333 NA intron (NR_110288, intron 1 of 3) L1PA15|LINE|L1 -28176 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 146.333-86 chr6 123262385 123262658 + 0.833333 NA intron (NM_006073, intron 33 of 40) L2a|LINE|L2 -177083 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 121.167-10 chr1 195038637 195038943 + 0.833333 NA Intergenic Intergenic 1049925 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 128.667-35 chr14 31645277 31645551 + 0.833333 NA intron (NM_001201573, intron 2 of 8) L1MA4|LINE|L1 67498 NM_001201573 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 289.667-11 chr7 50018940 50019416 + 0.833333 NA intron (NM_001159878, intron 5 of 7) intron (NM_001159878, intron 5 of 7) 74068 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 210.5-34 chr4 51898028 51898440 + 0.833333 NA intron (NM_001040402, intron 7 of 10) MER88|LTR|ERVL 54655 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 137.167-36 chr2 149121177 149121441 + 0.833333 NA intron (NM_001317002, intron 2 of 7) intron (NM_001317002, intron 2 of 7) 3135 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 168.833-40 chr4 48296438 48296745 + 0.833333 NA Intergenic Intergenic -26753 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 191.333-31 chr5 96902858 96903171 + 0.833333 NA intron (NM_001329229, intron 11 of 17) intron (NM_001329229, intron 11 of 17) 27075 NM_022350 64167 Hs.482910 NM_022350 ENSG00000164308 ERAP2 L-RAP|LRAP endoplasmic reticulum aminopeptidase 2 protein-coding 149-2 chr1 31216098 31216382 + 0.833333 NA intron (NM_024522, intron 1 of 6) intron (NM_024522, intron 1 of 6) 23647 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C sodium/potassium transporting ATPase interacting 1 protein-coding 169.333-9 chr10 60285483 60285846 + 0.833333 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 104211 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 117.833-74 chr7 35302192 35302431 + 0.833333 NA Intergenic Intergenic -11544 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 171.5-27 chr18 62056105 62056365 + 0.833333 NA intron (NM_176787, intron 30 of 30) intron (NM_176787, intron 30 of 30) 130821 NM_176787 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 214.333-5 chr1 189771097 189771471 + 0.833333 NA Intergenic Intergenic 704726 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 164.667-53 chr4 59828562 59828930 + 0.833333 NA Intergenic L1ME3|LINE|L1 815173 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 133.167-6 chr1 233987915 233988141 + 0.833333 NA intron (NM_173508, intron 2 of 7) HAL1|LINE|L1 83352 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 147.833-16 chr12 89349281 89349527 + 0.833333 NA exon (NM_001946, exon 3 of 3) exon (NM_001946, exon 3 of 3) 3097 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 120.667-53 chr2 14040915 14041151 + 0.833333 NA Intergenic Intergenic 359925 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 190.833-44 chr8 136162129 136162596 + 0.833333 NA Intergenic Intergenic -368436 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 173-61 chrX 72038457 72038692 + 0.833333 NA intron (NM_001013627, intron 1 of 7) L1ME3Cz|LINE|L1 -5835 NR_002309 441502 Hs.449523 NR_002309 RPS26P11 RPS26L1|RPS26_22_1784|bA366E13.1 ribosomal protein S26 pseudogene 11 pseudo 137.167-57 chr6 99724023 99724275 + 0.833333 NA Intergenic L1MA1|LINE|L1 117375 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 210-16 chr2 65643766 65644222 + 0.833333 NA Intergenic Intergenic -211395 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 130.667-68 chr4 107101385 107101637 + 0.833333 NA Intergenic L1MA3|LINE|L1 -65198 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 119.167-71 chr4 90337769 90337926 + 0.833333 NA intron (NM_207491, intron 3 of 7) Charlie1|DNA|hAT-Charlie 102816 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 175.667-62 chr7 15579382 15579771 + 0.833333 NA Intergenic AluSp|SINE|Alu -17561 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 233.333-15 chr15 58010466 58010905 + 0.833333 NA exon (NM_001206897, exon 5 of 14) exon (NM_001206897, exon 5 of 14) 3338 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 306.667-4 chr14 87546151 87546644 + 0.833333 NA Intergenic Intergenic 108897 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 206.333-25 chr5 142981259 142981776 + 0.833333 NA intron (NR_146198, intron 11 of 22) intron (NR_146198, intron 11 of 22) -112607 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 135.167-8 chr1 110058126 110058474 + 0.833333 NA Intergenic Intergenic 12372 NM_006492 257 Hs.669953 NM_006492 ENSG00000156150 ALX3 FND|FND1 ALX homeobox 3 protein-coding 182.833-15 chr13 68019707 68020145 + 0.833333 NA Intergenic Intergenic 647539 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 257.167-3 chr18 7731072 7731454 + 0.833333 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 163947 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 158.833-7 chr10 67099427 67099719 + 0.833333 NA non-coding (NR_111909, exon 3 of 3) non-coding (NR_111909, exon 3 of 3) 87307 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 221.167-25 chr8 70302783 70303078 + 0.833333 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 100460 NM_001321713 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 137.333-114 chr9 113002753 113003196 + 0.833333 NA intron (NM_001101338, intron 2 of 4) MLT1A1|LTR|ERVL-MaLR 9218 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 258.333-22 chr2 165465698 165466273 + 0.833333 NA Intergenic Intergenic -3713 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 196.167-4 chr10 16608253 16608629 + 0.833333 NA intron (NM_152724, intron 7 of 7) intron (NM_152724, intron 7 of 7) -86562 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 156.167-11 chr11 29430196 29430422 + 0.833333 NA Intergenic MIR|SINE|MIR -164104 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 216.667-34 chr4 129147109 129147564 + 0.833333 NA Intergenic Intergenic 51184 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 302.833-2 chr12 49704380 49704883 + 0.833333 NA intron (NM_001367835, intron 1 of 26) AluSx|SINE|Alu 2774 NM_175736 91010 Hs.179838 NM_175736 ENSG00000161791 FMNL3 FHOD3|FRL2|WBP-3|WBP3 formin like 3 protein-coding 229.833-13 chr3 112217687 112218344 + 0.833333 NA intron (NM_001320531, intron 13 of 27).2 MIRb|SINE|MIR 76201 NM_183061 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 128.5-58 chr4 129634253 129634723 + 0.833333 NA Intergenic L2a|LINE|L2 136990 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 164.5-9 chr10 124649937 124650347 + 0.833333 NA intron (NM_014661, intron 4 of 4) intron (NM_014661, intron 4 of 4) -53886 NR_120630 101927944 Hs.437448 NR_120630 FAM53B-AS1 - FAM53B antisense RNA 1 ncRNA 146.833-65 chr8 140522473 140523012 + 0.833333 NA 3' UTR (NM_012154, exon 19 of 19) 3' UTR (NM_012154, exon 19 of 19) 10746 NR_040712 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex subunit 1 protein-coding 148.167-7 chr10 24462555 24462946 + 0.833333 NA intron (NM_001321681, intron 1 of 13) intron (NM_001321681, intron 1 of 13) -3781 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 116.5-68 chr5 52628023 52628424 + 0.833333 NA Intergenic L1PA15|LINE|L1 -159693 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 221-15 chr17 51444135 51444523 + 0.833333 NA non-coding (NR_146897, exon 3 of 3) non-coding (NR_146897, exon 3 of 3) 8902 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 218.667-19 chr2 97678621 97678936 + 0.833333 NA intron (NR_038386, intron 5 of 9) AluJb|SINE|Alu 9035 NR_038386 728537 Hs.469369 NM_001351368 ENSG00000228486 C2orf92 LINC01125 chromosome 2 open reading frame 92 protein-coding 161.167-45 chr5 66272609 66273151 + 0.833333 NA Intergenic MIRc|SINE|MIR -63434 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 176.167-45 chr8 92212164 92212490 + 0.833333 NA Intergenic Intergenic -108942 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 123.5-38 chr18 41302449 41302725 + 0.833333 NA Intergenic L1PREC2|LINE|L1 218090 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 126.167-10 chr10 6682149 6682308 + 0.833333 NA Intergenic Intergenic 47158 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 268.5-18 chr8 122341514 122342198 + 0.833333 NA Intergenic AluJr|SINE|Alu 226788 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 116.833-19 chr17 18893029 18893320 + 0.833333 NA intron (NM_001353099, intron 8 of 11) AluSx3|SINE|Alu 27705 NM_001243940 5636 Hs.632236 NM_002767 ENSG00000141127 PRPSAP2 PAP41 phosphoribosyl pyrophosphate synthetase associated protein 2 protein-coding 147.5-28 chr14 63983298 63983567 + 0.833333 NA intron (NM_015180, intron 17 of 114) intron (NM_015180, intron 17 of 114) 111693 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 147.167-22 chr14 84681092 84681454 + 0.833333 NA Intergenic L1M3b|LINE|L1 -590659 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 166.833-25 chr2 176916972 176917309 + 0.833333 NA Intergenic L1M6|LINE|L1 279386 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 244-7 chr17 62761332 62761653 + 0.833333 NA intron (NM_001288780, intron 4 of 10) AluSq2|SINE|Alu 45148 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 152.833-45 chr3 105678003 105678241 + 0.833333 NA intron (NR_135812, intron 16 of 18) intron (NR_135812, intron 16 of 18) 189469 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 144.5-75 chr5 105934671 105934951 + 0.833333 NA Intergenic Intergenic 835337 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 173.167-4 chr10 34393997 34394259 + 0.833333 NA intron (NM_001184789, intron 7 of 22) AluSc|SINE|Alu 421168 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 122.5-49 chr2 86812833 86813057 + 0.833333 NA Intergenic L1MCa|LINE|L1 -4549 NM_001145873 925 Hs.85258 NM_001768 ENSG00000153563 CD8A CD8|Leu2|p32 CD8a molecule protein-coding 346.333-8 chr6 144618162 144618842 + 0.833333 NA intron (NM_007124, intron 50 of 73) intron (NM_007124, intron 50 of 73) 212847 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 215.833-11 chr2 15429994 15430388 + 0.833333 NA intron (NR_052013, intron 21 of 50) intron (NR_052013, intron 21 of 50) 131143 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 224.667-15 chr2 79014545 79014897 + 0.833333 NA Intergenic Intergenic -10981 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 115.667-68 chr21 21222890 21223091 + 0.833333 NA intron (NM_001352592, intron 2 of 18) Tigger1|DNA|TcMar-Tigger 75828 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 148-80 chr8 82492461 82492798 + 0.833333 NA Intergenic Intergenic -419475 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 157.833-55 chr5 94487288 94487559 + 0.833333 NA intron (NM_001145678, intron 5 of 20) intron (NM_001145678, intron 5 of 20) 131181 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 144.833-41 chr20 57306890 57307167 + 0.833333 NA Intergenic Intergenic 14563 NR_036219 100422883 NR_036219 ENSG00000266666 MIR4325 - microRNA 4325 ncRNA 158-44 chr6 42626796 42627083 + 0.833333 NA intron (NM_001363705, intron 11 of 46) LTR8|LTR|ERV1 62910 NM_001184801 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 155.667-38 chr2 33842242 33842537 + 0.833333 NA intron (NR_126403, intron 1 of 5) L2a|LINE|L2 -114172 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 126.167-92 chr8 140410411 140410595 + 0.833333 NA intron (NM_001321646, intron 4 of 21) AluSz6|SINE|Alu 47241 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 209-7 chr10 26787990 26788367 + 0.833333 NA intron (NM_001012752, intron 2 of 9) THE1A|LTR|ERVL-MaLR 72909 NM_001348034 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 268.833-11 chr3 13984278 13984633 + 0.833333 NA intron (NR_002223, intron 1 of 2) L1MA2|LINE|L1 47148 NR_002223 348825 Hs.529180 NR_002223 ENSG00000180438 TPRXL TPRX3P tetrapeptide repeat homeobox like pseudo 130.667-20 chr13 53338882 53339131 + 0.833333 NA Intergenic Intergenic -187106 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 282.167-15 chr7 24805401 24806103 + 0.833333 NA intron (NR_104111, intron 20 of 21) intron (NR_104111, intron 20 of 21) -47813 NM_001127454 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 172-7 chr11 19251950 19252513 + 0.833333 NA Intergenic (T)n|Simple_repeat|Simple_repeat -10576 NM_001256372 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 143.333-83 chr7 91796090 91796420 + 0.833333 NA Intergenic MIRc|SINE|MIR 84447 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 214.166-3 chr18 36753412 36754011 + 0.833333 NA intron (NM_001281740, intron 24 of 28) L1M4|LINE|L1 75291 NM_001330572 25941 Hs.436636 NM_015476 ENSG00000134779 TPGS2 C18orf10|HMFN0601|L17|PGs2 tubulin polyglutamylase complex subunit 2 protein-coding 138.5-57 chr4 149855294 149855460 + 0.833333 NA Intergenic L2b|LINE|L2 -39534 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 243-12 chr14 68799747 68800267 + 0.833333 NA Intergenic L1ME1|LINE|L1 -3764 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 130-10 chr10 11651387 11651649 + 0.833333 NA Intergenic Intergenic -39729 NR_125732 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 197.833-30 chr5 119836763 119837036 + 0.833333 NA Intergenic (TTATCT)n|Simple_repeat|Simple_repeat 207340 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 203.5-39 chr7 77666121 77666474 + 0.833333 NA intron (NR_134251, intron 2 of 3) AluSx|SINE|Alu 29968 NR_134251 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 332.333 chr14 36001780 36002525 + 0.833333 NA Intergenic MER77|LTR|ERVL -68275 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 193.333-26 chr2 21874034 21874303 + 0.833333 NA Intergenic L1PA15|LINE|L1 -163516 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 155.5-4 chr1 204386196 204386432 + 0.833333 NA Intergenic L2a|LINE|L2 -16595 NR_027022 127841 Hs.213144 NR_027022 ENSG00000280924 LINC00628 - long intergenic non-protein coding RNA 628 ncRNA 158.167-14 chr16 77006903 77007466 + 0.833333 NA Intergenic L1ME3A|LINE|L1 138248 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 296.167-10 chr7 54846513 54846937 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger 87412 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 263.667-12 chr3 74922735 74923147 + 0.833333 NA Intergenic Intergenic -291535 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 182.833-60 chr8 142676361 142676690 + 0.833333 NA intron (NR_033343, intron 1 of 2) intron (NR_033343, intron 1 of 2) -3970 NM_005672 8000 Hs.652235 NM_005672 ENSG00000167653 PSCA PRO232 prostate stem cell antigen protein-coding 203.833-22 chr6 11350620 11351007 + 0.833333 NA intron (NR_073131, intron 1 of 9) L2b|LINE|L2 31535 NR_073131 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 165.667-65 chr7 28330303 28330650 + 0.833333 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) 31155 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 183.5-23 chr17 51292212 51292506 + 0.833333 NA intron (NM_016001, intron 11 of 13) intron (NM_016001, intron 11 of 13) 31813 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18 small subunit processome component protein-coding 185.667-58 chr8 119010611 119011126 + 0.833333 NA intron (NM_001324095, intron 1 of 7) L1MC1|LINE|L1 -56379 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 153.5-14 chr11 90729995 90730362 + 0.833333 NA intron (NR_104190, intron 3 of 6) L2|LINE|L2 139024 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 187.333-16 chr12 60591170 60591457 + 0.833333 NA Intergenic MER77|LTR|ERVL 901943 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 115.667-84 chr4 64971205 64971401 + 0.833333 NA intron (NR_033976, intron 2 of 6) L1ME1|LINE|L1 33197 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 190.833-24 chr2 182470435 182470911 + 0.833333 NA intron (NM_005019, intron 1 of 14) L2c|LINE|L2 -43625 NM_001363871 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 170.833-17 chr2 77785070 77785312 + 0.833333 NA intron (NR_110288, intron 3 of 3) L1M5|LINE|L1 -130743 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 162.833-15 chr14 56245901 56246273 + 0.833333 NA intron (NM_021255, intron 2 of 5) L3|LINE|CR1 127676 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 197.333-21 chr16 4052576 4053068 + 0.833333 NA intron (NM_001116, intron 2 of 10) intron (NM_001116, intron 2 of 10) 63620 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 203.333-28 chr22 45322251 45322687 + 0.833333 NA intron (NM_001104595, intron 3 of 9) intron (NM_001104595, intron 3 of 9) 4026 NM_001349913 55007 Hs.265018 NM_017911 ENSG00000100376 FAM118A C22orf8 family with sequence similarity 118 member A protein-coding 267.833-7 chr18 9523155 9523733 + 0.833333 NA intron (NM_006788, intron 4 of 9) AluJr4|SINE|Alu 47931 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 134.5-27 chr13 105550325 105550551 + 0.833333 NA Intergenic Intergenic -44757 NR_040247 282706 Hs.558713 NR_040247 ENSG00000232307 DAOA-AS1 DAOA-AS|DAOAAS|G30 DAOA antisense RNA 1 ncRNA 229.333-36 chr9 96328092 96328600 + 0.833333 NA intron (NM_001286990, intron 6 of 8) AluJr|SINE|Alu -26170 NM_000197 3293 Hs.477 NM_000197 ENSG00000130948 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid 17-beta dehydrogenase 3 protein-coding 169.5-57 chr5 110508195 110508417 + 0.833333 NA intron (NM_001039763, intron 12 of 13) intron (NM_001039763, intron 12 of 13) 5609 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 188.833-6 chr10 93483534 93483941 + 0.833333 NA Intergenic Intergenic -1403 NM_013451 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 192.167-43 chr8 73086760 73087064 + 0.833333 NA intron (NM_153225, intron 1 of 4) intron (NM_153225, intron 1 of 4) 6260 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 117.5-65 chr6 151173290 151173477 + 0.833333 NA Intergenic L1PA3|LINE|L1 55074 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 167.167-4 chr1 108140658 108140980 + 0.833333 NA intron (NM_013386, intron 8 of 9).2 L1MB2|LINE|L1 52016 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 226.5-24 chr3 163271434 163272021 + 0.833333 NA intron (NR_033945, intron 2 of 6) intron (NR_033945, intron 2 of 6) 31574 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 142.333-2 chr1 28136506 28136848 + 0.833333 NA Intergenic MIR|SINE|MIR 40013 NM_000952 5724 Hs.77542 NM_000952 ENSG00000169403 PTAFR PAFR platelet activating factor receptor protein-coding 221.833-11 chr19 35191775 35192114 + 0.833333 NA Intergenic Intergenic 36781 NM_152481 148109 Hs.128069 NM_152481 ENSG00000177558 FAM187B TMEM162 family with sequence similarity 187 member B protein-coding 123.667-65 chr21 29257274 29257595 + 0.833333 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -41488 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 211.667-6 chr10 96115685 96116085 + 0.833333 NA Intergenic L1MEg|LINE|L1 -13830 NM_001278526 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 116-88 chr7 53901444 53901872 + 0.833333 NA Intergenic Intergenic -89727 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 310.833-2 chr2 56164895 56165327 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -18879 NM_001080433 114800 Hs.117136 NM_001080433 ENSG00000055813 CCDC85A - coiled-coil domain containing 85A protein-coding 208.667-37 chr5 181165362 181165972 + 0.833333 NA Intergenic L1MD|LINE|L1 10724 NM_206880 285659 Hs.553681 NM_206880 ENSG00000182613 OR2V2 OR2V3|OST713 olfactory receptor family 2 subfamily V member 2 protein-coding 161-18 chr15 59977996 59978313 + 0.833333 NA Intergenic Intergenic -26157 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 280.833-6 chr3 195007563 195008014 + 0.833333 NA Intergenic Intergenic -86800 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 279.667-14 chr4 72099079 72099789 + 0.833333 NA intron (NM_001144756, intron 2 of 4) MSTB|LTR|ERVL-MaLR 60302 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 184-56 chr6 133940314 133940649 + 0.833333 NA Intergenic L1ME3F|LINE|L1 -11689 NM_001253676 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 166.5-34 chr2 212597869 212598342 + 0.833333 NA Intergenic Intergenic -59303 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 193-18 chr16 79203549 79203979 + 0.833333 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 396973 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 182.5-27 chr22 36586989 36587318 + 0.833333 NA intron (NM_006078, intron 2 of 3) L2b|LINE|L2 -57987 NM_003753 8664 Hs.55682 NM_003753 ENSG00000100353 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3 subunit D protein-coding 211-38 chrX 70709702 70710187 + 0.833333 NA intron (NM_001003811, intron 14 of 30) intron (NM_001003811, intron 14 of 30) 136351 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 196.667-8 chr11 4565491 4565982 + 0.833333 NA Intergenic Intergenic 20545 NM_001004137 119772 Hs.553567 NM_001004137 ENSG00000197790 OR52M1 OR11-11|OR52M1P|OR52M3P olfactory receptor family 52 subfamily M member 1 protein-coding 182.833-13 chr12 41886528 41886780 + 0.833333 NA Intergenic L1ME3G|LINE|L1 122465 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 304.5-10 chr6 54362320 54362696 + 0.833333 NA intron (NM_014464, intron 9 of 10) Tigger1|DNA|TcMar-Tigger 54067 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 126.833-19 chr10 113774001 113774187 + 0.833333 NA intron (NM_001193434, intron 8 of 12) intron (NM_001193434, intron 8 of 12) 3960 NR_039703 100616162 NR_039703 ENSG00000283656 MIR4483 - microRNA 4483 ncRNA 197.167-36 chr3 98420136 98420625 + 0.833333 NA Intergenic L1M2|LINE|L1 29714 NM_001005516 403277 Hs.554709 NM_001005516 ENSG00000206536 OR5K3 - olfactory receptor family 5 subfamily K member 3 protein-coding 186-10 chr11 62027820 62028199 + 0.833333 NA Intergenic AluSx|SINE|Alu -60375 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 189.167-18 chr15 76615085 76615323 + 0.833333 NA intron (NR_148227, intron 22 of 32) AluSz|SINE|Alu 28557 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 134.833-22 chr18 2055914 2056097 + 0.833333 NA Intergenic Intergenic 515500 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 139.833-16 chr12 10524649 10524982 + 0.833333 NA Intergenic Intergenic 18922 NM_001357731 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 262-8 chr2 78234798 78235540 + 0.833333 NA intron (NR_110288, intron 1 of 3) L1M3|LINE|L1 55562 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 134.167-37 chr2 31575366 31575681 + 0.833333 NA intron (NM_000348, intron 1 of 4) L2c|LINE|L2 5415 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 113.667-118 chr7 44132125 44132349 + 0.833333 NA Intergenic Intergenic -8667 NM_006230 5425 Hs.306791 NM_006230 ENSG00000106628 POLD2 - DNA polymerase delta 2, accessory subunit protein-coding 141.667-67 chr3 113542370 113542615 + 0.833333 NA intron (NM_001322297, intron 1 of 24) L1M8|LINE|L1 9937 NR_136281 54847 Hs.591291 NM_017699 ENSG00000072858 SIDT1 SID-1|SID1 SID1 transmembrane family member 1 protein-coding 178-3 chr1 212017836 212018196 + 0.833333 NA intron (NM_001199809, intron 2 of 18) intron (NM_001199809, intron 2 of 18) -17537 NM_001286230 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 166-68 chr8 39937041 39937249 + 0.833333 NA intron (NM_194294, intron 1 of 10) intron (NM_194294, intron 1 of 10) 2190 NM_194294 169355 Hs.676257 NM_194294 ENSG00000188676 IDO2 INDOL1 indoleamine 2,3-dioxygenase 2 protein-coding 113.5-51 chr2 123940030 123940269 + 0.833333 NA Intergenic Intergenic 85025 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 216.333-3 chr1 64208914 64209364 + 0.833333 NA intron (NM_001366233, intron 3 of 9) intron (NM_001366233, intron 3 of 9) 5516 NM_001366234 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 128.167-23 chr14 45624214 45624389 + 0.833333 NA Intergenic Intergenic 91301 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 220.667-10 chr14 52642201 52642561 + 0.833333 NA 3' UTR (NM_014584, exon 16 of 16) 3' UTR (NM_014584, exon 16 of 16) 53177 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 171.833-27 chr3 39165247 39165556 + 0.833333 NA Intergenic Charlie25|DNA|hAT-Charlie -10760 NM_001320560 64651 Hs.370950 NM_033027 ENSG00000144655 CSRNP1 AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1 cysteine and serine rich nuclear protein 1 protein-coding 143.833-53 chr8 70359083 70359275 + 0.833333 NA intron (NM_001321703, intron 1 of 22) L1MB5|LINE|L1 44211 NM_001321713 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 217.5-53 chrX 70980307 70980627 + 0.833333 NA Intergenic Intergenic -49371 NM_001048164 84889 Hs.175220 NM_032803 ENSG00000165349 SLC7A3 ATRC3|CAT-3|CAT3 solute carrier family 7 member 3 protein-coding 139.667-88 chr8 67729283 67729688 + 0.833333 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 16875 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 137.667-58 chr2 136562697 136562907 + 0.833333 NA Intergenic L2c|LINE|L2 -202743 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 335.833 chr10 59602358 59602923 + 0.833333 NA Intergenic L2c|LINE|L2 107251 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 186.5-11 chr10 35835189 35835495 + 0.833333 NA Intergenic Intergenic 57040 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 282.667-13 chr6 46717898 46718296 + 0.833333 NA intron (NM_005084, intron 2 of 11) L2c|LINE|L2 17278 NM_005084 7941 Hs.584823 NM_005084 ENSG00000146070 PLA2G7 LDL-PLA2|LP-PLA2|PAFAD|PAFAH phospholipase A2 group VII protein-coding 167-63 chr8 135795309 135795816 + 0.833333 NA Intergenic (T)n|Simple_repeat|Simple_repeat 338106 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 135.667-66 chr3 4861459 4861708 + 0.833333 NA Intergenic L1MEi|LINE|L1 44918 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 218-9 chr13 36216918 36217339 + 0.833333 NA intron (NM_001198910, intron 6 of 15) intron (NM_001198910, intron 6 of 15) -2513 NM_001282147 54937 Hs.124519 NM_017826 ENSG00000120669 SOHLH2 SOSF2|SPATA28|TEB1|bHLHe81 spermatogenesis and oogenesis specific basic helix-loop-helix 2 protein-coding 202.167-7 chr11 23126825 23127305 + 0.833333 NA Intergenic Cheshire|DNA|hAT-Charlie -266591 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 190-33 chr2 197018859 197019144 + 0.833333 NA intron (NM_001367496, intron 17 of 27) MIRb|SINE|MIR -92294 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 187.333-39 chr2 173946419 173946821 + 0.833333 NA intron (NM_003111, intron 4 of 6) L1MEi|LINE|L1 17260 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 130.667-15 chr12 8579314 8579499 + 0.833333 NA Intergenic Intergenic 33453 NM_020661 57379 Hs.149342 NM_020661 ENSG00000111732 AICDA AID|ARP2|CDA2|HEL-S-284|HIGM2 activation induced cytidine deaminase protein-coding 115.167-32 chr14 47020618 47021128 + 0.833333 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) 322373 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 137.833-20 chr2 46145062 46145436 + 0.833333 NA intron (NM_005400, intron 12 of 14) intron (NM_005400, intron 12 of 14) -152158 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 124.833-72 chr5 22995625 22995952 + 0.833333 NA Intergenic L1MA1|LINE|L1 -142444 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 252.667-15 chr20 39911168 39911655 + 0.833333 NA Intergenic Intergenic -93050 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 147-24 chr17 35031425 35031731 + 0.833333 NA intron (NR_037713, intron 1 of 6) L2c|LINE|L2 32129 NM_001017368 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding 141.167-53 chr4 43889606 43889809 + 0.833333 NA Intergenic Intergenic -127154 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 153.333-26 chr17 19359535 19359973 + 0.833333 NA intron (NM_001243473, intron 2 of 5) MIRb|SINE|MIR 2969 NM_001321214 27077 Hs.309467 NM_015681 ENSG00000108641 B9D1 B9|EPPB9|JBTS27|MKS9|MKSR-1|MKSR1 B9 domain containing 1 protein-coding 173.333-51 chr4 165374448 165374961 + 0.833333 NA Intergenic L1MB1|LINE|L1 -4304 NM_001873 1363 Hs.75360 NM_001873 ENSG00000109472 CPE CPH carboxypeptidase E protein-coding 333.333-3 chr5 164796184 164796636 + 0.833333 NA Intergenic Intergenic 326131 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 133.667-47 chr2 19312641 19312831 + 0.833333 NA Intergenic Charlie15b|DNA|hAT-Charlie -35693 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 171.333-71 chrX 135298008 135298315 + 0.833333 NA intron (NM_007131, intron 1 of 6) intron (NM_007131, intron 1 of 6) -2122 NM_001185063 7626 Hs.371717 NM_007131 ENSG00000186376 ZNF75D D8C6|ZKSCAN24|ZNF75|ZNF82|ZSCAN28 zinc finger protein 75D protein-coding 138.833-43 chr2 202093999 202094188 + 0.833333 NA intron (NM_001277372, intron 4 of 23) AluJr|SINE|Alu 20838 NM_001367720 100652824 Hs.686898 NM_001080445 ENSG00000182329 KIAA2012 - KIAA2012 protein-coding 251.667-19 chr5 152798062 152798616 + 0.833333 NA intron (NR_109877, intron 3 of 4) AluYj4|SINE|Alu 174010 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 148.833-51 chr5 106801188 106801461 + 0.833333 NA Intergenic Intergenic 209690 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 116.5-60 chr4 65851662 65851912 + 0.833333 NA Intergenic Intergenic -181292 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 118.167-27 chr17 34216118 34216279 + 0.833333 NA Intergenic L1PA5|LINE|L1 -32566 NR_110748 101927239 Hs.603592 NR_110748 ENSG00000261156 LINC01989 - long intergenic non-protein coding RNA 1989 ncRNA 147.833-30 chr19 45523699 45523952 + 0.833333 NA intron (NM_003370, intron 8 of 12) intron (NM_003370, intron 8 of 12) 16346 NM_003370 7408 Hs.515469 NM_003370 ENSG00000125753 VASP - vasodilator stimulated phosphoprotein protein-coding 245-7 chr12 48023282 48023595 + 0.833333 NA Intergenic Intergenic -18962 NM_033150 1280 Hs.408182 NM_001844 ENSG00000139219 COL2A1 ANFH|AOM|COL11A3|SEDC|STL1 collagen type II alpha 1 chain protein-coding 244.5-27 chr8 117750987 117751606 + 0.833333 NA Intergenic Intergenic 169617 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 152.667-89 chr9 21280150 21280711 + 0.833333 NA Intergenic Intergenic -1867 NR_036676 3453 Hs.545842 NR_036676 IFNA22P IFNAP22 interferon alpha 22, pseudogene pseudo 188.5-7 chr1 244374122 244374487 + 0.833333 NA intron (NM_001276349, intron 2 of 3) intron (NM_001276349, intron 2 of 3) 21669 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 132-82 chr6 53051487 53051914 + 0.833333 NA intron (NM_014920, intron 1 of 13) MLT1D|LTR|ERVL-MaLR 10102 NM_016513 22858 Hs.417022 NM_014920 ENSG00000112144 ICK ECO|EJM10|LCK2|MRK intestinal cell kinase protein-coding 140.167-63 chr6 119426485 119426764 + 0.833333 NA Intergenic Intergenic 64678 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 172.667-72 chr7 7128135 7128540 + 0.833333 NA Intergenic Intergenic -31551 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 213.333-19 chr2 108396992 108397495 + 0.833333 NA Intergenic MER4-int|LTR|ERV1 19289 NM_006588 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 149.333-71 chr5 11182772 11183001 + 0.833333 NA intron (NM_001288715, intron 10 of 20) intron (NM_001288715, intron 10 of 20) 406031 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 161.333-48 chr3 161622025 161622401 + 0.833333 NA Intergenic Intergenic 125405 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 138-30 chr14 31416300 31416507 + 0.833333 NA intron (NM_015473, intron 1 of 35) AluSx1|SINE|Alu 4147 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 148.5-59 chr5 104491653 104491913 + 0.833333 NA Intergenic Intergenic -607691 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 170.667-77 chr8 104718409 104718662 + 0.833333 NA Intergenic Intergenic -129511 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 119.667-13 chr11 27358082 27358246 + 0.833333 NA intron (NM_030771, intron 1 of 5) intron (NM_030771, intron 1 of 5) 5051 NM_030771 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 285.833-9 chr7 86527033 86527549 + 0.833333 NA Intergenic Intergenic -116618 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 146.667-67 chr4 112205518 112205885 + 0.833333 NA Intergenic Intergenic -26086 NM_018569 55435 Hs.435991 NM_018569 ENSG00000138660 AP1AR 2C18|C4orf16|GBAR|PRO0971|gamma-BAR adaptor related protein complex 1 associated regulatory protein protein-coding 200.833-31 chr6 149036781 149037065 + 0.833333 NA intron (NM_005715, intron 7 of 7) intron (NM_005715, intron 7 of 7) -4262 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 120.167-40 chr2 152292317 152292677 + 0.833333 NA Intergenic AluJb|SINE|Alu -42677 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 171.5-17 chr14 34314687 34314953 + 0.833333 NA Intergenic Intergenic 147420 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 145.333-36 chr18 21999349 21999566 + 0.833333 NA Intergenic Intergenic -168051 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 161-44 chr3 182678014 182678330 + 0.833333 NA Intergenic Intergenic -115332 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 124.167-72 chr5 76292958 76293300 + 0.833333 NA intron (NM_014979, intron 8 of 12) MIR3|SINE|MIR -110156 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 193.333-16 chr12 99942828 99943302 + 0.833333 NA intron (NM_152788, intron 1 of 25) MLT1K|LTR|ERVL-MaLR 41589 NM_001352188 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 140.667-39 chr17 55178027 55178490 + 0.833333 NA Intergenic MIRb|SINE|MIR -86702 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 261-23 chr6 156968450 156968984 + 0.833333 NA intron (NM_020732, intron 5 of 19) MIRb|SINE|MIR -67710 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 174.5-59 chr9 119719786 119720095 + 0.833333 NA Intergenic MamTip2|DNA|hAT-Tip100 -215120 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 201.167-14 chr2 179852429 179852970 + 0.833333 NA intron (NM_001352808, intron 1 of 10) intron (NM_001352808, intron 1 of 10) 8209 NR_031659 100302172 NR_031659 ENSG00000221240 MIR1258 MIRN1258|hsa-mir-1258|mir-1258 microRNA 1258 ncRNA 232-4 chr10 53130382 53130710 + 0.833333 NA Intergenic Intergenic -358846 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 145.5-22 chr14 62262049 62262281 + 0.833333 NA Intergenic Intergenic -122192 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 265.167-5 chr18 1749301 1749699 + 0.833333 NA Intergenic L1MCb|LINE|L1 -389871 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 241.667-21 chr21 29365500 29366037 + 0.833333 NA Intergenic Intergenic -6733 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 231.833-6 chr17 53175585 53176045 + 0.833333 NA Intergenic Tigger2|DNA|TcMar-Tigger 190310 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 242.667-10 chr14 54695188 54695530 + 0.833333 NA intron (NM_015589, intron 1 of 11) MLT1F|LTR|ERVL-MaLR -59474 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 228-7 chr12 46496688 46497019 + 0.833333 NA intron (NR_125380, intron 3 of 3) Tigger3b|DNA|TcMar-Tigger 112746 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 182.167-17 chr18 6247052 6247616 + 0.833333 NA intron (NR_158611, intron 4 of 16) L1MC4|LINE|L1 -9410 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 206.833-25 chr7 80253370 80253757 + 0.833333 NA Intergenic MamGypLTR1a|LTR|Gypsy 117779 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 139.333-76 chr5 79013132 79013613 + 0.833333 NA intron (NM_013391, intron 14 of 15) MSTA-int|LTR|ERVL-MaLR -27414 NM_198709 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 223-9 chr14 71566706 71567100 + 0.833333 NA intron (NM_001354289, intron 5 of 23) intron (NM_001354289, intron 5 of 23) -19395 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 243.833-15 chr3 15116846 15117320 + 0.833333 NA Intergenic MIRb|SINE|MIR -17926 NR_126155 64145 Hs.475565 NM_022340 ENSG00000131381 RBSN Rabenosyn-5|ZFYVE20 rabenosyn, RAB effector protein-coding 249.667-13 chr15 84059356 84059918 + 0.833333 NA Intergenic L1MEg|LINE|L1 -20550 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 192.667-42 chr5 67507679 67508086 + 0.833333 NA Intergenic L1M8|LINE|L1 138907 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 288.833-4 chr13 52152697 52153117 + 0.833333 NA intron (NM_002498, intron 4 of 15) intron (NM_002498, intron 4 of 15) 6628 NM_152720 4752 Hs.409989 NM_002498 ENSG00000136098 NEK3 HSPK36 NIMA related kinase 3 protein-coding 129.5-36 chr18 72707751 72707951 + 0.833333 NA Intergenic Intergenic 145531 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 198.333 chr1 116282923 116283271 + 0.833333 NA Intergenic L1M1|LINE|L1 -90147 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 135.167-42 chr18 22527488 22527836 + 0.833333 NA Intergenic MIRb|SINE|MIR -109747 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 154.167-30 chr18 70765500 70765793 + 0.833333 NA Intergenic L1PA10|LINE|L1 -114692 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 151.833-20 chr16 59418489 59418790 + 0.833333 NA Intergenic Intergenic 336552 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 202.333-15 chr15 58276340 58276634 + 0.833333 NA Intergenic AluSq|SINE|Alu 138106 NM_001320635 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 214-47 chr7 51832326 51832757 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -439285 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 169.5-16 chr12 31439287 31439648 + 0.833333 NA intron (NM_144973, intron 7 of 20) L2a|LINE|L2 -70166 NR_146469 101929027 Hs.266041 NR_146469 ENSG00000256232 LINC02387 - long intergenic non-protein coding RNA 2387 ncRNA 182.833-5 chr10 14776593 14776824 + 0.833333 NA Intergenic Intergenic -1811 NM_031453 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 114.667-91 chr4 28990451 28990629 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR -6244 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 197-39 chr5 64207286 64207593 + 0.833333 NA intron (NM_001113561, intron 2 of 7) L2b|LINE|L2 41596 NM_001323292 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 175.833-12 chr14 66786254 66786486 + 0.833333 NA intron (NM_001024218, intron 3 of 21) L1MDa|LINE|L1 278963 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 208.667-38 chr6 100347066 100347352 + 0.833333 NA Intergenic L2b|LINE|L2 116466 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 213.833-17 chr2 145266179 145266556 + 0.833333 NA Intergenic MLT1M|LTR|ERVL-MaLR 598400 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 260.333-2 chr12 59420552 59420903 + 0.833333 NA Intergenic Intergenic -175302 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 207.333-10 chr11 40198638 40198939 + 0.833333 NA intron (NM_020929, intron 3 of 4) intron (NM_020929, intron 3 of 4) 94342 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 264.5-15 chr6 21037126 21037479 + 0.833333 NA intron (NM_017774, intron 11 of 15) intron (NM_017774, intron 11 of 15) 474590 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 201.5-11 chr17 47227348 47227658 + 0.833333 NA Intergenic Tigger2|DNA|TcMar-Tigger 18155 NM_002476 4635 Hs.463300 NM_002476 ENSG00000198336 MYL4 ALC1|AMLC|GT1|PRO1957 myosin light chain 4 protein-coding 113.167-21 chr16 5462972 5463223 + 0.833333 NA Intergenic Intergenic 153153 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 292.5-7 chr14 28726947 28727486 + 0.833333 NA intron (NR_125758, intron 6 of 6) intron (NR_125758, intron 6 of 6) 38103 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 121.5-18 chr10 106392947 106393184 + 0.833333 NA Intergenic MER76|LTR|ERVL 252900 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 153.833-37 chr20 41469714 41470260 + 0.833333 NA intron (NM_032221, intron 17 of 36) intron (NM_032221, intron 17 of 36) -103169 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 164.167-10 chr11 48267141 48267424 + 0.833333 NA Intergenic Intergenic 3421 NM_001004726 390113 Hs.553742 NM_001004726 ENSG00000176567 OR4X1 OR11-104 olfactory receptor family 4 subfamily X member 1 (gene/pseudogene) protein-coding 121.5-49 chr18 38598180 38598679 + 0.833333 NA Intergenic AluSz|SINE|Alu 941294 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 206.5-29 chr6 113498839 113499201 + 0.833333 NA Intergenic Intergenic -65573 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 147.167-65 chr9 78892204 78892540 + 0.833333 NA Intergenic Intergenic 253294 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 186.833-44 chr7 53291143 53291412 + 0.833333 NA Intergenic Intergenic 255644 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 198-6 chr1 87101782 87102187 + 0.833333 NA intron (NM_012262, intron 5 of 6) MSTB|LTR|ERVL-MaLR -27781 NR_026989 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 162.167-3 chr1 221237285 221237580 + 0.833333 NA Intergenic L2a|LINE|L2 98864 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 151.333-82 chr7 95842969 95843154 + 0.833333 NA intron (NM_004411, intron 5 of 16) L1MEc|LINE|L1 70555 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 208.667-31 chr3 165569557 165569922 + 0.833333 NA Intergenic L1MC2|LINE|L1 267684 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 212.667-14 chr12 30233219 30233747 + 0.833333 NA Intergenic Intergenic 443761 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 269-16 chr8 120240243 120240813 + 0.833333 NA intron (NM_021110, intron 19 of 47) intron (NM_021110, intron 19 of 47) 115426 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 175.333-24 chr2 9468951 9469312 + 0.833333 NA intron (NM_016207, intron 16 of 17) intron (NM_016207, intron 16 of 17) -5420 NM_001320859 285148 Hs.667226 NM_001039613 ENSG00000134330 IAH1 - isoamyl acetate hydrolyzing esterase 1 (putative) protein-coding 170.667-79 chr8 118352175 118352424 + 0.833333 NA intron (NM_001363274, intron 4 of 4) intron (NM_001363274, intron 4 of 4) -240480 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 269.833-15 chr5 57805786 57806529 + 0.833333 NA Intergenic MIRc|SINE|MIR 93005 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 160.667-19 chr11 84612434 84612738 + 0.833333 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 108356 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 237.333-20 chr2 147703562 147703974 + 0.833333 NA Intergenic MIR|SINE|MIR -140749 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 209.667-39 chr9 78914847 78915240 + 0.833333 NA Intergenic Intergenic 230623 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 172.833-3 chr1 75325018 75325318 + 0.833333 NA intron (NM_001320287, intron 4 of 24) L2c|LINE|L2 190780 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 139-7 chr12 5321313 5321552 + 0.833333 NA Intergenic L1MA5|LINE|L1 -78281 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 132.333-6 chr1 167194243 167194548 + 0.833333 NA intron (NR_110811, intron 2 of 3) L1MEc|LINE|L1 1410 NR_110811 101928484 Hs.568496 NR_110811 LINC01363 RBSG4 long intergenic non-protein coding RNA 1363 ncRNA 122.667-17 chr12 17336403 17336709 + 0.833333 NA Intergenic Intergenic 252522 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 172.667-17 chr11 60100015 60100226 + 0.833333 NA Intergenic Intergenic 11456 NM_000139 2206 Hs.386748 NM_000139 ENSG00000149534 MS4A2 APY|ATOPY|FCER1B|FCERI|IGEL|IGER|IGHER|MS4A1 membrane spanning 4-domains A2 protein-coding 205.333-23 chr2 40889103 40889647 + 0.833333 NA Intergenic Intergenic -376940 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 137-2 chr1 57647677 57647880 + 0.833333 NA intron (NM_001353980, intron 4 of 5) MIRb|SINE|MIR -212803 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 160.167-40 chr22 39741202 39741710 + 0.833333 NA Intergenic L2|LINE|L2 152304 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 121-11 chr10 132035240 132035442 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR -30605 NM_001323090 282973 Hs.106254 NM_194303 ENSG00000188385 JAKMIP3 C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5 Janus kinase and microtubule interacting protein 3 protein-coding 125.167-71 chr6 157352360 157352582 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -28212 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 115.333-35 chr15 62704177 62704395 + 0.833333 NA intron (NM_015059, intron 16 of 55) Arthur1B|DNA|hAT-Tip100 56975 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 181.5-27 chr2 77427487 77427751 + 0.833333 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 94757 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 188-49 chr5 88879348 88879738 + 0.833333 NA intron (NM_001131005, intron 2 of 10) intron (NM_001131005, intron 2 of 10) 3641 NM_001364347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 235.667-5 chr12 77386426 77386935 + 0.833333 NA Intergenic Intergenic -321111 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 153.5 chr1 66125347 66125710 + 0.833333 NA intron (NM_001037340, intron 1 of 14) MER6A|DNA|TcMar-Tigger -74810 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 143.667-54 chr2 41539753 41540039 + 0.833333 NA Intergenic L2a|LINE|L2 -337659 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 189.333-17 chr16 86893756 86894043 + 0.833333 NA Intergenic Intergenic -163885 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 200.833-2 chr10 4872122 4872578 + 0.833333 NA intron (NR_026743, intron 10 of 10) intron (NR_026743, intron 10 of 10) 43923 NR_026743 389932 Hs.631812 NR_026743 AKR1C6P TAKR aldo-keto reductase family 1 member C6, pseudogene pseudo 118.167-49 chr4 87247596 87247789 + 0.833333 NA Intergenic L1MB7|LINE|L1 -27074 NM_001292006 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 121.5-12 chr1 243959420 243959662 + 0.833333 NA intron (NR_033883, intron 1 of 11) intron (NR_033883, intron 1 of 11) 42139 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LINC02774 - long intergenic non-protein coding RNA 2774 ncRNA 230.333-29 chr7 45367538 45368062 + 0.833333 NA Intergenic L1MA7|LINE|L1 -206340 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 147.833-35 chr2 50787173 50787373 + 0.833333 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -91011 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 154.833-12 chr11 12711250 12711492 + 0.833333 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 36950 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 181.667-21 chr2 17099890 17100271 + 0.833333 NA Intergenic Intergenic 418360 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 142.5-60 chr5 41701653 41701962 + 0.833333 NA Intergenic L1MEg|LINE|L1 141850 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 269.667-11 chr2 35220890 35221553 + 0.833333 NA Intergenic Intergenic -250184 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 125.333-25 chr11 9498698 9498858 + 0.833333 NA intron (NM_001282656, intron 10 of 15) intron (NM_001282656, intron 10 of 15) 37766 NM_003442 7702 Hs.523471 NM_003442 ENSG00000166478 ZNF143 SBF|STAF|pHZ-1 zinc finger protein 143 protein-coding 194.667-44 chr3 157962244 157962789 + 0.833333 NA Intergenic Intergenic 143647 NM_006884 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 273.333-14 chr3 103768084 103768543 + 0.833333 NA Intergenic Intergenic -244197 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 164.667-59 chr5 122803752 122804188 + 0.833333 NA intron (NM_003100, intron 6 of 14) AluSz|SINE|Alu 28890 NM_003100 6643 Hs.125352 NM_003100 ENSG00000205302 SNX2 TRG-9 sorting nexin 2 protein-coding 299.333-4 chr17 62777002 62777557 + 0.833333 NA intron (NM_001288780, intron 4 of 10) MER66B|LTR|ERV1 29361 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 169.167-34 chr5 65120028 65120416 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 351292 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 119-32 chr14 73812415 73812649 + 0.833333 NA Intergenic L1MC5|LINE|L1 17603 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 115.167-111 chr8 135641027 135641257 + 0.833333 NA intron (NM_006558, intron 7 of 8) intron (NM_006558, intron 7 of 8) 183686 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 202.667-16 chr16 78186842 78187145 + 0.833333 NA intron (NM_001291997, intron 4 of 7) L1MD2|LINE|L1 87339 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 239.5-22 chr5 106381692 106382244 + 0.833333 NA Intergenic Intergenic 629046 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 137-57 chr2 106723420 106723625 + 0.833333 NA Intergenic LTR40a|LTR|ERVL 162506 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 146.667-85 chr7 27077012 27077390 + 0.833333 NA Intergenic MIR3|SINE|MIR 18799 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 131-15 chr12 93778689 93778921 + 0.833333 NA intron (NM_001320100, intron 2 of 2) intron (NM_001320100, intron 2 of 2) -40982 NR_110092 101928731 Hs.659971 NR_110092 ENSG00000258274 LOC101928731 - uncharacterized LOC101928731 ncRNA 202.167-39 chr8 129721296 129721794 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR -41306 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 218.833-17 chr2 112469100 112469478 + 0.833333 NA Intergenic L1MA4|LINE|L1 -12867 NM_153712 150465 Hs.358997 NM_153712 ENSG00000114999 TTL - tubulin tyrosine ligase protein-coding 195.333-58 chr8 50725462 50725918 + 0.833333 NA intron (NM_001287814, intron 16 of 16) BLACKJACK|DNA|hAT-Blackjack 561559 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 180.667-40 chr2 207792448 207792840 + 0.833333 NA Intergenic MIR3|SINE|MIR -22738 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 150.167-25 chr18 61084530 61084749 + 0.833333 NA Intergenic Intergenic -248791 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 249.333-4 chr13 31016072 31016402 + 0.833333 NA Intergenic Intergenic 83581 NR_148425 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 186-29 chr3 103922572 103922831 + 0.833333 NA Intergenic AluSp|SINE|Alu -398585 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 249-14 chr22 40273069 40273386 + 0.833333 NA intron (NM_001162501, intron 6 of 22) MIRc|SINE|MIR -73273 NM_001363840 158 Hs.75527 NM_000026 ENSG00000239900 ADSL AMPS|ASASE|ASL adenylosuccinate lyase protein-coding 147.667-71 chr8 105317315 105317656 + 0.833333 NA promoter-TSS (NM_001362836) promoter-TSS (NM_001362836) -953 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 124.333-83 chr5 75689127 75689496 + 0.833333 NA intron (NM_152408, intron 7 of 10) intron (NM_152408, intron 7 of 10) 23144 NM_152408 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 205.167-4 chr10 37364386 37364833 + 0.833333 NA Intergenic L1MC|LINE|L1 55423 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 185.333-59 chr7 115427923 115428428 + 0.833333 NA Intergenic MIRb|SINE|MIR 153266 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 118.833-27 chr15 62333891 62334119 + 0.833333 NA Intergenic L1M1|LINE|L1 -9024 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 201.333-42 chr8 125349356 125349644 + 0.833333 NA intron (NM_001349486, intron 5 of 7) FLAM_C|SINE|Alu -80858 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 139-63 chr6 141216064 141216336 + 0.833333 NA Intergenic Tigger2|DNA|TcMar-Tigger 532386 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 131.5-50 chr3 106354989 106355198 + 0.833333 NA Intergenic L1PA15|LINE|L1 -485692 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 166.5-7 chr10 113940928 113941213 + 0.833333 NA Intergenic MIR3|SINE|MIR 86409 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 149.167-25 chr15 77359995 77360186 + 0.833333 NA intron (NM_024776, intron 1 of 7) L1MB8|LINE|L1 60014 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 186-11 chr11 89162468 89162801 + 0.833333 NA Intergenic Intergenic -15241 NM_000372 7299 Hs.503555 NM_000372 ENSG00000077498 TYR ATN|CMM8|OCA1|OCA1A|OCAIA|SHEP3 tyrosinase protein-coding 176.334-2 chr12 86902016 86902575 + 0.833333 NA Intergenic L1MEd|LINE|L1 -63295 NM_001351285 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 150.833-35 chr4 140142231 140142438 + 0.833333 NA intron (NM_018717, intron 1 of 4) L1ME3G|LINE|L1 11850 NM_018717 55534 Hs.586165 NM_018717 ENSG00000196782 MAML3 CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3|mam-3 mastermind like transcriptional coactivator 3 protein-coding 126.167-77 chr6 38240671 38240943 + 0.833333 NA intron (NM_052893, intron 10 of 11) intron (NM_052893, intron 10 of 11) -240789 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 164-45 chr4 15362728 15363082 + 0.833333 NA intron (NM_001135170, intron 1 of 2) MIRc|SINE|MIR -11646 NM_001135171 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 200.833-22 chr21 32900743 32901184 + 0.833333 NA Intergenic L1PA16|LINE|L1 -57925 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 304.833-5 chr5 117145146 117145700 + 0.833333 NA Intergenic Intergenic -270089 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 299.833-7 chr7 40026995 40027524 + 0.833333 NA intron (NM_003718, intron 5 of 13) AluSz|SINE|Alu 76899 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 225-35 chr8 47442388 47442715 + 0.833333 NA intron (NM_001080394, intron 8 of 19) intron (NM_001080394, intron 8 of 19) 181613 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 142-32 chr14 83227485 83227703 + 0.833333 NA Intergenic Intergenic 584962 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 200-9 chr11 50534031 50534432 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr 125084 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 140.167-37 chr20 50775067 50775311 + 0.833333 NA Intergenic AluJo|SINE|Alu -19705 NM_017843 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 162.833-3 chr1 109716972 109717358 + 0.833333 NA intron (NM_000851, intron 7 of 7) intron (NM_000851, intron 7 of 7) 4914 NM_000851 2949 Hs.75652 NM_000851 ENSG00000134201 GSTM5 GSTM5-5|GTM5 glutathione S-transferase mu 5 protein-coding 283.167-9 chr5 126021398 126022067 + 0.833333 NA Intergenic Intergenic -157845 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 140-77 chr7 133214829 133215182 + 0.833333 NA Intergenic L2c|LINE|L2 -38062 NM_001037126 60412 Hs.321273 NM_021807 ENSG00000131558 EXOC4 SEC8|SEC8L1|Sec8p exocyst complex component 4 protein-coding 113.833-45 chr2 207189021 207189263 + 0.833333 NA intron (NR_110283, intron 3 of 3) intron (NR_110283, intron 3 of 3) -21896 NM_001270943 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 184-48 chr5 52237083 52237602 + 0.833333 NA Intergenic Intergenic 229311 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 147.833-44 chr3 129855458 129855832 + 0.833333 NA intron (NM_001349263, intron 2 of 7) intron (NM_001349263, intron 2 of 7) 37931 NM_001128224 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 186.167-15 chr12 113963871 113964142 + 0.833333 NA intron (NM_001146698, intron 1 of 24) L2c|LINE|L2 2319 NM_001146699 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 150.167-58 chr6 79085286 79085678 + 0.833333 NA Intergenic Intergenic -7228 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 335.334 chr2 96447484 96448190 + 0.833333 NA Intergenic L1MEc|LINE|L1 57520 NM_001285486 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 138.167-73 chr7 52607492 52608149 + 0.833333 NA Intergenic Intergenic -427813 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 214.833-10 chr15 101670357 101670827 + 0.833333 NA intron (NM_152334, intron 15 of 18) L1ME1|LINE|L1 -18201 NM_001307960 80213 Hs.288912 NM_025141 ENSG00000184277 TM2D3 BLP2 TM2 domain containing 3 protein-coding 218.667-25 chr4 42735475 42735890 + 0.833333 NA Intergenic Intergenic -78577 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 134-98 chr7 82350156 82350358 + 0.833333 NA intron (NM_000722, intron 1 of 38) L1ME4a|LINE|L1 93520 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 271.834-3 chr14 32158604 32159354 + 0.833333 NA 3' UTR (NM_001173, exon 7 of 7) 3' UTR (NM_001173, exon 7 of 7) -43066 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 137-72 chr4 58699438 58699710 + 0.833333 NA Intergenic Charlie7|DNA|hAT-Charlie -163246 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 231-30 chr8 117390151 117390686 + 0.833333 NA Intergenic L1MC4|LINE|L1 -130295 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 235.833-10 chr2 77799281 77799693 + 0.833333 NA intron (NR_110288, intron 3 of 3) L1MD|LINE|L1 -116447 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 378.5 chr14 80512196 80512961 + 0.833333 NA intron (NM_152446, intron 23 of 24) L1M1|LINE|L1 -281521 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 152.167-31 chr2 114064514 114064890 + 0.833333 NA Intergenic Intergenic -84718 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 142.167-49 chr20 32419082 32419504 + 0.833333 NA intron (NM_015338, intron 3 of 11) AluJo|SINE|Alu 60228 NM_001363734 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 151-38 chr20 31445866 31446115 + 0.833333 NA intron (NM_153324, intron 1 of 1) L1MC5|LINE|L1 5358 NM_153324 245936 Hs.122509 NM_153324 ENSG00000180424 DEFB123 DEFB-23|DEFB23|ESC42-RELD defensin beta 123 protein-coding 118.167-13 chr12 77516867 77517111 + 0.833333 NA Intergenic Tigger13a|DNA|TcMar-Tigger -313905 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 183.167-5 chr1 170848740 170849070 + 0.833333 NA Intergenic L1MA8|LINE|L1 -86566 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 114.667-60 chr2 213424363 213424610 + 0.833333 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 140022 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 208.667 chr1 27483212 27483640 + 0.833333 NA intron (NM_006990, intron 1 of 8) AluSq2|SINE|Alu 6741 NM_001201404 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WASP family member 2 protein-coding 134-77 chr3 191698354 191698694 + 0.833333 NA Intergenic L1MC4|LINE|L1 237361 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 269.667-15 chr2 121210580 121211021 + 0.833333 NA Intergenic Intergenic 74402 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 224-17 chr16 81037138 81037477 + 0.833333 NA 5' UTR (NM_001300728, exon 1 of 4) 5' UTR (NM_001300728, exon 1 of 4) 109 NM_001300728 23300 Hs.16349 NM_015251 ENSG00000166454 ATMIN ASCIZ|ZNF822 ATM interactor protein-coding 255.333-23 chr6 104954464 104954921 + 0.833333 NA Intergenic Intergenic -2415 NM_001004317 389421 Hs.23616 NM_001004317 ENSG00000187772 LIN28B CSDD2 lin-28 homolog B protein-coding 156.667-37 chr15 65732376 65732880 + 0.833333 NA intron (NM_005848, intron 8 of 31) intron (NM_005848, intron 8 of 31) -13296 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 210.167-19 chr3 94432775 94433177 + 0.833333 NA Intergenic Intergenic 369915 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 155-65 chr5 60885564 60885788 + 0.833333 NA intron (NM_001007233, intron 12 of 12) intron (NM_001007233, intron 12 of 12) -41402 NM_001104558 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 138.833-52 chr22 28435672 28436041 + 0.833333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -24013 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 147.667-27 chr17 42915225 42915478 + 0.833333 NA TTS (NM_001270397) TTS (NM_001270397) 14552 NM_000151 2538 Hs.212293 NM_000151 ENSG00000131482 G6PC G6PC1|G6PT|G6Pase|GSD1|GSD1a glucose-6-phosphatase catalytic subunit protein-coding 207.833-35 chr7 115370533 115370887 + 0.833333 NA Intergenic L1MB2|LINE|L1 -139355 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 147.667-8 chr1 217748897 217749249 + 0.833333 NA intron (NM_138796, intron 6 of 10) intron (NM_138796, intron 6 of 10) 36047 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 266-20 chr6 100102057 100102436 + 0.833333 NA Intergenic Intergenic -108008 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 115.167-109 chr8 126048029 126048207 + 0.833333 NA Intergenic L1PA15-16|LINE|L1 -96921 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 251.333-2 chr10 7419396 7419733 + 0.833333 NA Intergenic MIR|SINE|MIR -8078 NM_001029880 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 210.5-41 chr5 89969252 89969677 + 0.833333 NA Intergenic Intergenic 47256 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 171.167-54 chr7 80462403 80462689 + 0.833333 NA exon (NM_001102386, exon 6 of 8) exon (NM_001102386, exon 6 of 8) 49518 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 179.167-16 chr13 78692224 78692503 + 0.833333 NA Intergenic Intergenic -33208 NM_024546 79596 Hs.567576 NM_024546 ENSG00000152193 OBI1 C13orf7|RNF219 ORC ubiquitin ligase 1 protein-coding 128.667-81 chr4 55520947 55521140 + 0.833333 NA intron (NM_004898, intron 1 of 22) intron (NM_004898, intron 1 of 22) 24889 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 184.833-6 chr13 107759691 107759991 + 0.833333 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 75617 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 ncRNA 348.833-2 chr4 82909073 82910019 + 0.833333 NA intron (NM_001317776, intron 5 of 5) L1ME4a|LINE|L1 -8630 NR_034076 100499177 Hs.728916 NR_034075 ENSG00000251022 THAP9-AS1 - THAP9 antisense RNA 1 ncRNA 199.667-21 chr17 52197890 52198287 + 0.833333 NA Intergenic Intergenic -38071 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 230-7 chr12 37718397 37718748 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -598202 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 134.667-34 chr15 71079145 71079446 + 0.833333 NA Intergenic MIR3|SINE|MIR -62154 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 183-55 chr8 107532152 107532482 + 0.833333 NA Intergenic Intergenic -34399 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 192.5-24 chr2 106660799 106661262 + 0.833333 NA Intergenic Intergenic 173666 NM_001368307 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 207.833 chr1 22805407 22805822 + 0.833333 NA intron (NM_004442, intron 3 of 15) intron (NM_004442, intron 3 of 15) 57612 NR_036214 100422914 NR_036214 ENSG00000264014 MIR4253 - microRNA 4253 ncRNA 172.167-40 chr5 82958115 82958412 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -98427 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 203.333-24 chr20 63323925 63324518 + 0.833333 NA intron (NM_020882, intron 27 of 35) L1M5|LINE|L1 31035 NM_020882 57642 Hs.271285 NM_020882 ENSG00000101203 COL20A1 - collagen type XX alpha 1 chain protein-coding 142-24 chr12 743428 743787 + 0.833333 NA Intergenic L1ME1|LINE|L1 -8972 NM_014823 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 124.667-70 chr22 21040124 21040384 + 0.833333 NA Intergenic MER34-int|LTR|ERV1 3995 NR_002829 440799 Hs.640665 NR_002829 P2RX6P - purinergic receptor P2X 6 pseudogene pseudo 178.333-20 chr17 59693905 59694198 + 0.833333 NA 3' UTR (NM_004859, exon 32 of 32) 3' UTR (NM_004859, exon 32 of 32) 13547 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 121.333-121 chr9 132322287 132322543 + 0.833333 NA intron (NM_001351527, intron 10 of 25) L1MB7|LINE|L1 32441 NM_001351527 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 273.833-12 chr9 89024001 89024576 + 0.833333 NA intron (NM_016848, intron 11 of 11) AluJo|SINE|Alu 32820 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 221.167-19 chr4 92459733 92460035 + 0.833333 NA intron (NM_001286838, intron 1 of 14) MLT2D|LTR|ERVL 155485 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 229.667-34 chr8 129898291 129898598 + 0.833333 NA intron (NM_001353243, intron 3 of 13) intron (NM_001353243, intron 3 of 13) 41367 NM_001353313 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 194-8 chr11 16916201 16916573 + 0.833333 NA intron (NM_001329630, intron 3 of 26) MIRb|SINE|MIR 9635 NR_145810 109623465 NR_145810 SNORD147 - small nucleolar RNA, C/D box 147 snoRNA 170-16 chr14 47584739 47585171 + 0.833333 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 89999 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 193-39 chr6 63463765 63464247 + 0.833333 NA Intergenic L1MC5|LINE|L1 -108006 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 121.667-27 chr15 26398594 26398886 + 0.833333 NA Intergenic L1MC2|LINE|L1 230350 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 267.333-2 chr1 214731758 214732382 + 0.833333 NA Intergenic MLT1L|LTR|ERVL-MaLR 128875 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 203-24 chr20 40359802 40360164 + 0.833333 NA Intergenic L3b|LINE|CR1 329253 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 224-3 chr10 48358293 48358727 + 0.833333 NA intron (NM_001323302, intron 3 of 13) L1MB4|LINE|L1 -43102 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 222.5-36 chr9 88273999 88274409 + 0.833333 NA Intergenic Intergenic -114240 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 281-13 chr2 153333833 153334458 + 0.833333 NA Intergenic Intergenic 144617 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 132.5-66 chr4 60748421 60748741 + 0.833333 NA Intergenic Intergenic -174038 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 220-23 chr6 65959613 65960006 + 0.833333 NA Intergenic Intergenic 171930 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 170.667-2 chr1 101171396 101171825 + 0.833333 NA Intergenic Intergenic 64918 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 254-26 chr6 88437466 88437933 + 0.833333 NA Intergenic Intergenic 101670 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 239.833-14 chr2 38302361 38302700 + 0.833333 NA intron (NM_001135673, intron 9 of 12) L1MA3|LINE|L1 74000 NM_001330459 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 176.167-37 chr5 131203021 131203490 + 0.833333 NA non-coding (NR_121658, exon 3 of 3) non-coding (NR_121658, exon 3 of 3) 32311 NM_181705 90624 Hs.115467 NM_181705 ENSG00000186687 LYRM7 C5orf31|MC3DN8|MZM1L LYR motif containing 7 protein-coding 163.167-30 chr4 60230167 60230476 + 0.833333 NA Intergenic THE1C|LTR|ERVL-MaLR -692298 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 194.667-54 chr5 131646655 131647082 + 0.833333 NA intron (NM_133372, intron 17 of 17) intron (NM_133372, intron 17 of 17) -11639 NM_001164387 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 225-13 chr14 45698342 45698832 + 0.833333 NA Intergenic MSTB|LTR|ERVL-MaLR 17015 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 248.333-5 chr15 72378602 72379082 + 0.833333 NA TTS (NR_027262) TTS (NR_027262) 2729 NR_027262 80072 Hs.591113 NM_025005 ENSG00000260339 HEXA-AS1 C15orf34 HEXA antisense RNA 1 ncRNA 138.5-26 chr14 47470698 47471143 + 0.833333 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -127674 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 215.333-20 chr18 52704040 52704347 + 0.833333 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 363996 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 179-56 chrX 77313654 77313916 + 0.833333 NA Intergenic L1M2|LINE|L1 -133604 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 175.667-59 chr6 120930906 120931308 + 0.833333 NA Intergenic L3|LINE|CR1 403373 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 120.333-121 chr8 126832493 126832775 + 0.833333 NA Intergenic Intergenic -180520 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 218-49 chr9 28963700 28964083 + 0.833333 NA intron (NM_001354574, intron 1 of 5) L1MA4A|LINE|L1 -74936 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 236.167 chr1 101034835 101035319 + 0.833333 NA intron (NR_109849, intron 1 of 4) intron (NR_109849, intron 1 of 4) 9231 NR_109849 102606465 Hs.593669 NR_109849 LOC102606465 - uncharacterized LOC102606465 ncRNA 291.667-21 chr7 85138185 85138732 + 0.833333 NA Intergenic AluSz6|SINE|Alu -16527 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 159.667-21 chr11 18390224 18390594 + 0.833333 NA Intergenic L1MA4|LINE|L1 2622 NR_036116 100423016 NR_036116 ENSG00000264603 MIR3159 - microRNA 3159 ncRNA 273.667-13 chr2 156044633 156044982 + 0.833333 NA intron (NR_110250, intron 1 of 3) L1PA10|LINE|L1 210124 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 217.333-25 chr4 88766443 88767102 + 0.833333 NA intron (NM_001015045, intron 7 of 17) intron (NM_001015045, intron 7 of 17) 56589 NM_001265578 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 138.833-62 chr4 78850221 78850461 + 0.833333 NA intron (NM_017593, intron 6 of 13) intron (NM_017593, intron 6 of 13) 73963 NM_198892 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 145.5-21 chr14 60246888 60247164 + 0.833333 NA intron (NM_177952, intron 1 of 5) intron (NM_177952, intron 1 of 5) 1276 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 147.5-55 chr20 57320407 57320595 + 0.833333 NA Intergenic L1MB7|LINE|L1 1090 NR_036219 100422883 NR_036219 ENSG00000266666 MIR4325 - microRNA 4325 ncRNA 153.5-30 chr2 18397319 18397553 + 0.833333 NA Intergenic L2a|LINE|L2 163217 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 143-83 chr8 136447918 136448207 + 0.833333 NA Intergenic MIRb|SINE|MIR -82736 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 178.5-32 chr15 70471898 70472418 + 0.833333 NA Intergenic MLT1A1|LTR|ERVL-MaLR 33770 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 169.667-64 chr6 64456803 64457097 + 0.833333 NA intron (NM_001292009, intron 26 of 43) MIRc|SINE|MIR 650114 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 181.5-24 chr2 13045565 13045947 + 0.833333 NA Intergenic L1PA8A|LINE|L1 -38743 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 133.5-46 chr4 108815006 108815187 + 0.833333 NA intron (NM_198721, intron 36 of 36) intron (NM_198721, intron 36 of 36) -52043 NM_001331033 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 175.167-38 chr5 18001488 18001917 + 0.833333 NA Intergenic Intergenic 194428 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 209.5-36 chr6 124168741 124169214 + 0.833333 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -114028 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 268-4 chr14 63294907 63295316 + 0.833333 NA Intergenic Intergenic 23824 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 259.5-10 chr20 50846007 50846429 + 0.833333 NA intron (NM_198799, intron 4 of 4) intron (NM_198799, intron 4 of 4) 51324 NM_198799 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 164.333-89 chrX 85157555 85157852 + 0.833333 NA intron (NM_001367858, intron 2 of 11) intron (NM_001367858, intron 2 of 11) -48735 NM_001012980 340562 Hs.640783 NM_001012980 ENSG00000184788 SATL1 - spermidine/spermine N1-acetyl transferase like 1 protein-coding 207.833-14 chr17 3267680 3268063 + 0.833333 NA Intergenic Intergenic 11103 NM_002551 4995 Hs.647414 NM_002551 ENSG00000221882 OR3A2 OLFRA04|OR17-14|OR17-228|OR228 olfactory receptor family 3 subfamily A member 2 protein-coding 227.833-17 chr5 16677058 16677445 + 0.833333 NA intron (NM_012334, intron 33 of 40) intron (NM_012334, intron 33 of 40) -60193 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 163.833-44 chr4 176795815 176796257 + 0.833333 NA Intergenic L1MD|LINE|L1 -3114 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 199.5-35 chr5 143325370 143325656 + 0.833333 NA intron (NR_157096, intron 1 of 7) MER44B|DNA|TcMar-Tigger 77770 NM_001364182 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 138.333-41 chr15 72001444 72001777 + 0.833333 NA intron (NM_006901, intron 8 of 41) intron (NM_006901, intron 8 of 41) -112648 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 223.667-26 chr5 148603645 148603968 + 0.833333 NA intron (NM_001040172, intron 1 of 5) L1ME3|LINE|L1 33255 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 238.167-14 chr2 127109347 127109814 + 0.833333 NA Intergenic L1ME4c|LINE|L1 -2426 NM_139345 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 119.167-12 chr11 42473720 42473879 + 0.833333 NA Intergenic Intergenic -220109 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 147.833-25 chr16 74001286 74001591 + 0.833333 NA Intergenic L1M2|LINE|L1 214083 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 261.333-9 chr22 12693714 12694164 + 0.833333 NA Intergenic CpG 796533 NR_110761 102723769 Hs.652926 NR_110761 LOC102723769 - uncharacterized LOC102723769 ncRNA 256.5-14 chr2 80886927 80887630 + 0.833333 NA Intergenic Intergenic 573899 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 166.5-46 chr4 90571846 90572294 + 0.833333 NA intron (NM_207491, intron 5 of 7) L1MA6|LINE|L1 337039 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 183.5-16 chr16 49074812 49075106 + 0.833333 NA Intergenic L1M4a1|LINE|L1 206879 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 160.667-29 chr17 43725956 43726263 + 0.833333 NA Intergenic MLT1G|LTR|ERVL-MaLR 32682 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|DAND6|SOST1|VBCH sclerostin protein-coding 133-14 chr10 99160217 99160588 + 0.833333 NA intron (NM_021828, intron 2 of 11) L1MB8|LINE|L1 75473 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 145.667-60 chr3 5725415 5725656 + 0.833333 NA Intergenic Intergenic -475280 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 203.667-20 chr20 11142885 11143321 + 0.833333 NA Intergenic L2b|LINE|L2 116559 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 225.5-44 chr7 2475888 2476397 + 0.833333 NA intron (NM_001291784, intron 1 of 3) intron (NM_001291784, intron 1 of 3) 241 NM_001291784 402635 NM_001291784 GRIFIN - galectin-related inter-fiber protein protein-coding 180.5-15 chr14 28871269 28871508 + 0.833333 NA Intergenic Intergenic -85601 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 159-9 chr10 25558090 25558331 + 0.833333 NA intron (NM_020752, intron 6 of 10) intron (NM_020752, intron 6 of 10) -93502 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 203.5-6 chr1 220974109 220974469 + 0.833333 NA Intergenic Intergenic -94149 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 212-12 chr16 72306786 72307286 + 0.833333 NA intron (NR_126330, intron 9 of 13) L1MC5|LINE|L1 -134586 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 146.333-23 chr12 45188074 45188446 + 0.833333 NA intron (NR_037144, intron 1 of 2) AluJo|SINE|Alu 27746 NR_037144 51054 Hs.233495 NM_015899 ENSG00000134297 PLEKHA8P1 FAPP-2|FAPP2|PLEKHA8|PLEKHA9|hFAPP2 pleckstrin homology domain containing A8 pseudogene 1 pseudo 264-24 chr8 83073909 83074331 + 0.833333 NA Intergenic L1M4|LINE|L1 162016 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 172.667-3 chr1 101083186 101083504 + 0.833333 NA intron (NR_109849, intron 3 of 4) intron (NR_109849, intron 3 of 4) 57499 NR_109849 102606465 Hs.593669 NR_109849 LOC102606465 - uncharacterized LOC102606465 ncRNA 148.167-52 chr3 126089580 126089876 + 0.833333 NA intron (NM_001164475, intron 1 of 9) MER4B-int|LTR|ERV1 -5437 NM_001008486 54946 Hs.573007 NM_017836 ENSG00000114544 SLC41A3 SLC41A1-L2 solute carrier family 41 member 3 protein-coding 238.333-7 chr11 48804886 48805342 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -226486 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 244.5 chr10 51937782 51938223 + 0.833333 NA intron (NM_001098512, intron 5 of 17) MER44D|DNA|TcMar-Tigger -238407 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 168-31 chr2 164384253 164384584 + 0.833333 NA Intergenic L2c|LINE|L2 184077 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 201.167-10 chr2 22997648 22997958 + 0.833333 NA Intergenic Intergenic -387376 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 155.333-92 chr8 108916815 108917201 + 0.833333 NA Intergenic Intergenic -129414 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 166.333-63 chr5 121622557 121622806 + 0.833333 NA Intergenic L1ME1|LINE|L1 -229201 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 141.667-72 chr3 186822384 186822665 + 0.833333 NA intron (NR_125409, intron 3 of 3) AluSc|SINE|Alu 2997 NR_125409 102724699 Hs.518476 NR_125409 ENSG00000232233 LINC02043 - long intergenic non-protein coding RNA 2043 ncRNA 216.5-27 chr6 21331452 21331859 + 0.833333 NA Intergenic Intergenic 180237 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 168.833-52 chr8 136403240 136403500 + 0.833333 NA Intergenic L1MA5|LINE|L1 -127428 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 136.333-2 chr1 26810434 26810780 + 0.833333 NA Intergenic LTR50|LTR|ERVL -16081 NM_032283 84243 Hs.523710 NM_032283 ENSG00000204160 ZDHHC18 DHHC-18|DHHC18 zinc finger DHHC-type containing 18 protein-coding 150.333-76 chr4 92484863 92485103 + 0.833333 NA intron (NM_001286838, intron 1 of 14) MIRb|SINE|MIR 180584 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 171-66 chr8 139069570 139069903 + 0.833333 NA Intergenic Intergenic -155695 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 160.5-24 chr18 33127210 33127574 + 0.833333 NA intron (NM_001308126, intron 20 of 23) intron (NM_001308126, intron 20 of 23) 313179 NM_001371121 119.833-24 chr12 27051335 27051617 + 0.833333 NA Intergenic Intergenic 28918 NM_004264 9412 Hs.286145 NM_004264 ENSG00000152944 MED21 SRB7|SURB7|hSrb7 mediator complex subunit 21 protein-coding 211-30 chr5 50705889 50706211 + 0.833333 NA intron (NM_024615, intron 2 of 25) L1ME3Cz|LINE|L1 38636 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 185-34 chr22 41025068 41025306 + 0.833333 NA Intergenic AluSx1|SINE|Alu 48534 NR_132979 106635682 NR_132979 SNORD140 - small nucleolar RNA, C/D box 140 snoRNA 150.167-26 chr18 72100439 72100851 + 0.833333 NA Intergenic Intergenic -318419 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 219.667-16 chr2 98103125 98103581 + 0.833333 NA intron (NR_144297, intron 2 of 18) L1MEf|LINE|L1 16186 NM_144992 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 140.5-2 chr1 90671163 90671426 + 0.833333 NA Intergenic Intergenic 13544 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 149.167-67 chr9 91318915 91319270 + 0.833333 NA intron (NM_001306190, intron 3 of 8) L1ME3F|LINE|L1 42832 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 290.667 chr1 77071206 77071640 + 0.833333 NA Intergenic MLT1A|LTR|ERVL-MaLR 11280 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 162-22 chr14 36469613 36470002 + 0.833333 NA Intergenic L1ME3Cz|LINE|L1 43728 NR_161362 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 251.167-2 chr1 189703793 189704255 + 0.833333 NA Intergenic Intergenic 771986 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 233.833-7 chr2 155737883 155738171 + 0.833333 NA Intergenic MamSINE1|SINE|tRNA-RTE 516904 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 208.167-29 chr8 88463731 88464028 + 0.833333 NA Intergenic L1MC3|LINE|L1 -136396 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 136.333-17 chr11 78102348 78102535 + 0.833333 NA intron (NM_024079, intron 12 of 12) L1MB4|LINE|L1 -22579 NM_001203261 100532726 Hs.407860 NM_001203260 ENSG00000259112 NDUFC2-KCTD14 - NDUFC2-KCTD14 readthrough protein-coding 129.5-80 chr7 42695283 42695463 + 0.833333 NA intron (NR_110833, intron 1 of 2) intron (NR_110833, intron 1 of 2) 11074 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 145.833-11 chr10 86802424 86802650 + 0.833333 NA intron (NM_004329, intron 1 of 12) intron (NM_004329, intron 1 of 12) 45898 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 146.167-63 chr6 73991957 73992395 + 0.833333 NA Intergenic Intergenic -77275 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 174.833-29 chr21 19062779 19063093 + 0.833333 NA Intergenic MER34|LTR|ERV1 -303124 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 180.667-18 chr13 104674846 104675232 + 0.833333 NA Intergenic L2c|LINE|L2 -790828 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 141.667-8 chr10 62010077 62010288 + 0.833333 NA intron (NM_032199, intron 4 of 9) intron (NM_032199, intron 4 of 9) -39175 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 291.333 chr10 123061643 123062132 + 0.833333 NA Intergenic L1ME3G|LINE|L1 52881 NM_001330174 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase short/branched chain protein-coding 205.167-15 chr14 48650127 48650422 + 0.833333 NA Intergenic L1ME1|LINE|L1 -855260 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 173.667-64 chr8 18789958 18790221 + 0.833333 NA intron (NM_015310, intron 8 of 15) intron (NM_015310, intron 8 of 15) 18778 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 167.667-69 chr4 189007428 189007753 + 0.833333 NA Intergenic Intergenic 230933 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 146.333-72 chr4 31803942 31804211 + 0.833333 NA Intergenic Intergenic -193303 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 295.5-12 chr8 130959811 130960354 + 0.833333 NA intron (NM_001115, intron 2 of 17) L2a|LINE|L2 80827 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 151.833-51 chr7 9275121 9275349 + 0.833333 NA Intergenic Intergenic -359035 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 259.167-10 chr4 61651052 61651528 + 0.833333 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 449118 NM_001371342 215.333-21 chr18 73220215 73220670 + 0.833333 NA intron (NR_034133, intron 2 of 5) intron (NR_034133, intron 2 of 5) 44056 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 162-52 chr4 139650013 139650359 + 0.833333 NA Intergenic Intergenic -15582 NM_001204367 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 196-52 chr5 30913476 30913848 + 0.833333 NA Intergenic Intergenic -280024 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 258.5-18 chr5 141527426 141527826 + 0.833333 NA exon (NM_001314007, exon 24 of 29) exon (NM_001314007, exon 24 of 29) -30685 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 135.333-51 chr3 94211499 94211711 + 0.833333 NA Intergenic L1P4|LINE|L1 148544 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 118.167-41 chr22 24870128 24870347 + 0.833333 NA intron (NM_001098498, intron 12 of 23) intron (NM_001098498, intron 12 of 23) 64016 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 115.833-77 chr8 88651207 88651372 + 0.833333 NA Intergenic L1MCa|LINE|L1 -323806 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 150.667-39 chr16 10699198 10699482 + 0.833333 NA Intergenic SATR2|Satellite|Satellite -4410 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 180.333-20 chr15 89392945 89393224 + 0.833333 NA intron (NR_015411, intron 6 of 6) intron (NR_015411, intron 6 of 6) -7087 NR_160724 105371031 NR_160724 LOC105371031 - uncharacterized LOC105371031 ncRNA 189.667-18 chr14 53535287 53535936 + 0.833333 NA Intergenic Intergenic 382257 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 123.5-87 chr8 129745466 129745717 + 0.833333 NA Intergenic L2a|LINE|L2 41033 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 188.167-38 chr5 65819157 65819727 + 0.833333 NA intron (NM_020726, intron 12 of 12) MIRb|SINE|MIR 97237 NM_020726 57486 Hs.247460 NM_020726 ENSG00000123213 NLN AGTBP|EP24.16|MEP|MOP neurolysin protein-coding 171-55 chr7 24171095 24171310 + 0.833333 NA Intergenic Intergenic -112988 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 272.167-23 chr5 144212289 144212929 + 0.833333 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 7218 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 164-80 chr8 130398919 130399291 + 0.833333 NA intron (NM_001247996, intron 2 of 30) MLT1J|LTR|ERVL-MaLR 44555 NM_001362924 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 254.167-15 chr5 89060004 89060330 + 0.833333 NA intron (NR_136221, intron 3 of 6) L2c|LINE|L2 -156062 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 257.167-15 chr8 109352512 109352863 + 0.833333 NA Intergenic L2a|LINE|L2 -9774 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 143-49 chr3 138536432 138536700 + 0.833333 NA TTS (NM_001320600) TTS (NM_001320600) 55390 NM_001320600 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 129.667-86 chr5 145343669 145343880 + 0.833333 NA Intergenic L1M2|LINE|L1 491568 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 134.667-6 chr1 217326430 217326697 + 0.833333 NA Intergenic Intergenic -188861 NM_001243511 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 283-8 chr7 93655040 93655512 + 0.833333 NA Intergenic L1MEf|LINE|L1 -61652 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 160.167-12 chr12 58239963 58240284 + 0.833333 NA Intergenic ORSL-2a|DNA|hAT-Tip100 152231 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 209.833-9 chr14 41841295 41841784 + 0.833333 NA intron (NM_001330106, intron 2 of 4) L1ME2|LINE|L1 234683 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 197.667-56 chr7 65273719 65274190 + 0.833333 NA Intergenic L1M3a|LINE|L1 -99845 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 146.833-33 chr2 229304135 229304323 + 0.833333 NA Intergenic L1MB1|LINE|L1 -32942 NM_001100818 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 325.667-9 chr4 115438044 115438657 + 0.833333 NA Intergenic Intergenic -324730 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 194-32 chr2 58638980 58639294 + 0.833333 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 118384 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 391.833 chr11 38618383 38619138 + 0.833333 NA intron (NR_120554, intron 4 of 4) L2|LINE|L2 27596 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 215.667-18 chr17 63057715 63058093 + 0.833333 NA intron (NM_025185, intron 2 of 25) L1PREC2|LINE|L1 91669 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 183-35 chr22 20023182 20023598 + 0.833333 NA intron (NM_001322167, intron 1 of 6) intron (NM_001322167, intron 1 of 6) 2280 NM_152906 128989 Hs.474233 NM_152906 ENSG00000183597 TANGO2 C22orf25|MECRCN transport and golgi organization 2 homolog protein-coding 219-8 chr15 43026067 43026665 + 0.833333 NA intron (NM_174916, intron 23 of 46) L1MC4|LINE|L1 79672 NM_174916 197131 Hs.591121 NM_174916 ENSG00000159459 UBR1 JBS ubiquitin protein ligase E3 component n-recognin 1 protein-coding 237.833-15 chr6 7723341 7723780 + 0.833333 NA Intergenic Intergenic -2539 NM_001718 654 Hs.285671 NM_001718 ENSG00000153162 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 191.833-30 chr6 56635466 56635837 + 0.833333 NA exon (NM_001723, exon 10 of 24) exon (NM_001723, exon 10 of 24) 7238 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 264.167-18 chr5 2209352 2209755 + 0.833333 NA Intergenic Intergenic 102648 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 215.833-25 chr9 30583215 30583579 + 0.833333 NA Intergenic Intergenic -174943 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 196-18 chr12 91320962 91321267 + 0.833333 NA Intergenic Intergenic -138297 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 210.5-42 chr6 38426755 38427151 + 0.833333 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) -54643 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 151.333-8 chr10 55521271 55521509 + 0.833333 NA intron (NM_001354404, intron 2 of 34) Tigger5b|DNA|TcMar-Tigger -77652 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 270.667-19 chr5 125076612 125077135 + 0.833333 NA intron (NR_109882, intron 2 of 5) L1MA9|LINE|L1 40042 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 179-14 chr15 55228698 55229008 + 0.833333 NA intron (NM_183235, intron 4 of 6) intron (NM_183235, intron 4 of 6) -31912 NM_016304 51187 Hs.274772 NM_016304 ENSG00000137876 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 260.5-19 chr6 49132897 49133393 + 0.833333 NA Intergenic LTR80A|LTR|ERVL 330108 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 140.333-56 chr4 73681581 73681917 + 0.833333 NA Intergenic L1MA8|LINE|L1 -58820 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 170.833-46 chr7 90921703 90922016 + 0.833333 NA intron (NM_012395, intron 7 of 13) intron (NM_012395, intron 7 of 13) 212043 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 147-70 chr5 118913893 118914142 + 0.833333 NA intron (NM_001308081, intron 4 of 5) intron (NM_001308081, intron 4 of 5) -60569 NR_036263 100422872 NR_036263 ENSG00000283429 MIR1244-3 - microRNA 1244-3 ncRNA 247.5-28 chr8 106592486 106592885 + 0.833333 NA intron (NM_018002, intron 3 of 15) L2a|LINE|L2 -65123 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 262-26 chr8 78655568 78655935 + 0.833333 NA Intergenic (TTATTTA)n|Simple_repeat|Simple_repeat -10338 NM_016010 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 144.667-58 chr2 233870904 233871077 + 0.833333 NA Intergenic Intergenic -2581 NR_024322 151507 Hs.355809 NM_001166217 ENSG00000224287 MSL3P1 MSL3L2 MSL complex subunit 3 pseudogene 1 pseudo 205-18 chr2 13520546 13521026 + 0.833333 NA Intergenic LTR49-int|LTR|ERV1 -513773 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 209-27 chr20 25662480 25662812 + 0.833333 NA intron (NR_126465, intron 2 of 3) intron (NR_126465, intron 2 of 3) 24293 NM_001290261 26152 Hs.61881 NM_015655 ENSG00000130684 ZNF337 - zinc finger protein 337 protein-coding 175.5-33 chr3 7213937 7214179 + 0.833333 NA intron (NM_000844, intron 2 of 9) Kanga2_a|DNA|TcMar-Tc2 -320041 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 174.833-50 chr8 121668146 121668436 + 0.833333 NA Intergenic AluSg|SINE|Alu -26851 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 160.5-25 chr19 32292292 32292544 + 0.833333 NA Intergenic Intergenic -53192 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 114.333-52 chr17 60957345 60957541 + 0.833333 NA intron (NM_001330413, intron 14 of 25) MER53|DNA|hAT 279592 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 188.833-28 chr4 139230242 139230627 + 0.833333 NA Intergenic AluSq2|SINE|Alu 49791 NM_032623 84709 Hs.710036 NM_032623 ENSG00000137463 MGARP C4orf49|CESP-1|HUMMR|OSAP mitochondria localized glutamic acid rich protein protein-coding 252.167-18 chr8 72926587 72927085 + 0.833333 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -82028 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 211.833-16 chr3 51806958 51807503 + 0.833333 NA Intergenic L1MEg|LINE|L1 -10373 NR_038213 100506840 Hs.254808 NR_038213 ENSG00000224792 IQCF4 - IQ motif containing F5 pseudogene pseudo 244-24 chr8 89145075 89145705 + 0.833333 NA Intergenic Intergenic 612321 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 128.167-7 chr10 107560331 107560624 + 0.833333 NA Intergenic Intergenic -395771 NM_001206569 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 246.667-3 chr1 182202076 182202528 + 0.833333 NA Intergenic Intergenic 111759 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 123.833-29 chr2 56510747 56510938 + 0.833333 NA Intergenic Intergenic -325072 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 127.167-43 chr18 77742013 77742206 + 0.833333 NA Intergenic Intergenic 251618 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 144.5-22 chr13 40249287 40249530 + 0.833333 NA Intergenic L2|LINE|L2 -28906 NR_033877 400123 Hs.577960 NR_033877 ENSG00000215483 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 159-19 chr14 45232476 45232943 + 0.833333 NA intron (NM_018353, intron 7 of 16) intron (NM_018353, intron 7 of 16) 20493 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 143-44 chr3 19184857 19185184 + 0.833333 NA intron (NM_144633, intron 1 of 15) L1MB7|LINE|L1 36510 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 192.667-43 chr5 106290363 106290692 + 0.833333 NA Intergenic Intergenic 720487 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 311.333-3 chr18 13703506 13704161 + 0.833333 NA intron (NM_001098801, intron 1 of 4) MER57-int|LTR|ERV1 22725 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 195.5-41 chr8 105460756 105461126 + 0.833333 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 141398 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 234.833-20 chr5 41453847 41454274 + 0.833333 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 56541 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 121.167-16 chr11 87933325 87933632 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR -214067 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 277.5-9 chr22 28436508 28436933 + 0.833333 NA intron (NM_001145418, intron 2 of 22) MIR|SINE|MIR -23149 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 237.167-21 chr8 50871315 50871817 + 0.833333 NA Intergenic Intergenic 707435 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 224.5-18 chr4 33362222 33362538 + 0.833333 NA Intergenic Intergenic 677513 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 140.667-71 chr5 167779004 167779260 + 0.833333 NA intron (NM_001080428, intron 1 of 24) intron (NM_001080428, intron 1 of 24) 24203 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 160.5-58 chr7 146875566 146875878 + 0.833333 NA intron (NM_014141, intron 2 of 22) intron (NM_014141, intron 2 of 22) 101451 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 208.167-26 chr6 119305012 119305389 + 0.833333 NA intron (NM_005907, intron 3 of 12) intron (NM_005907, intron 3 of 12) 44561 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 182-14 chr14 58414986 58415405 + 0.833333 NA intron (NM_001304487, intron 1 of 3) L1MDa|LINE|L1 12047 NR_130753 26520 Hs.440525 NM_012460 ENSG00000100575 TIMM9 TIM9|TIM9A translocase of inner mitochondrial membrane 9 protein-coding 123-48 chr2 163980323 163980587 + 0.833333 NA Intergenic Intergenic -244447 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 150.667-79 chr5 157787526 157787819 + 0.833333 NA exon (NM_001195555, exon 12 of 12) exon (NM_001195555, exon 12 of 12) 43960 NM_173491 134353 Hs.23648 NM_173491 ENSG00000155858 LSM11 - LSM11, U7 small nuclear RNA associated protein-coding 170.167-27 chr18 72812033 72812311 + 0.833333 NA intron (NM_001354018, intron 4 of 11) MIRb|SINE|MIR 41210 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 170.834-4 chr15 34274186 34274848 + 0.833333 NA intron (NM_001042497, intron 1 of 23) intron (NM_001042497, intron 1 of 23) 44303 NM_005135 9990 Hs.510939 NM_005135 ENSG00000140199 SLC12A6 ACCPN|KCC3|KCC3A|KCC3B solute carrier family 12 member 6 protein-coding 144.167-32 chr17 80554239 80554564 + 0.833333 NA intron (NM_020761, intron 1 of 33) Charlie1|DNA|hAT-Charlie 9563 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 156.667-48 chr18 73379952 73380168 + 0.833333 NA Intergenic Intergenic 55119 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 145.667-79 chr5 16518295 16518505 + 0.833333 NA intron (NM_001034850, intron 3 of 8) GA-rich|Low_complexity|Low_complexity -9402 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 200.833-20 chr20 47922841 47923270 + 0.833333 NA Intergenic UCON80_AMi|Unknown|Unknown -60171 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 178.167-2 chr1 84393428 84393840 + 0.833333 NA Intergenic MIRb|SINE|MIR -4898 NM_021233 58511 Hs.129142 NM_021233 ENSG00000137976 DNASE2B DLAD deoxyribonuclease 2 beta protein-coding 240.667-11 chr13 61437378 61437728 + 0.833333 NA Intergenic Intergenic -9607 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 130.833-57 chr5 108062786 108063041 + 0.833333 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 319185 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 235.333-17 chr3 103310875 103311187 + 0.833333 NA Intergenic Intergenic 213085 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 175.5-2 chr1 12699464 12699859 + 0.833333 NA Intergenic Intergenic -16449 NM_001103170 126767 Hs.464705 NM_001103169 ENSG00000188984 AADACL3 - arylacetamide deacetylase like 3 protein-coding 144.333-51 chr2 190218422 190218655 + 0.833333 NA intron (NM_198047, intron 11 of 12) HERVP71A-int|LTR|ERV1 37675 NM_032321 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 169.5-64 chr7 17258494 17258753 + 0.833333 NA Intergenic L2c|LINE|L2 -40029 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 384.167 chr21 31635906 31636474 + 0.833333 NA Intergenic AluSx|SINE|Alu -23432 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 121.167-76 chr6 125674238 125674476 + 0.833333 NA promoter-TSS (NR_038906) promoter-TSS (NR_038906) 4 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 160-44 chr2 156707162 156707535 + 0.833333 NA Intergenic Intergenic 270969 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 183.5-36 chr2 191994011 191994308 + 0.833333 NA intron (NM_001305134, intron 7 of 9) L4_C_Mam|LINE|RTE-X -147071 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 258.167-16 chr7 29904260 29904643 + 0.833333 NA intron (NM_001080529, intron 8 of 8) intron (NM_001080529, intron 8 of 8) 85350 NM_014766 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 190.5-56 chr9 87291538 87292164 + 0.833333 NA Intergenic L1MB8|LINE|L1 143207 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 151.667-72 chr5 167457925 167458321 + 0.833333 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -115536 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 208.333-35 chr5 119883173 119883600 + 0.833333 NA Intergenic Intergenic 253827 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 154.833-51 chr6 55585057 55585510 + 0.833333 NA Intergenic Intergenic -6069 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 234.333-23 chr4 30571546 30571971 + 0.833333 NA Intergenic MamTip1|DNA|hAT-Tip100 -148611 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 132.333-62 chr20 41546275 41546467 + 0.833333 NA intron (NM_032221, intron 2 of 36) intron (NM_032221, intron 2 of 36) 72006 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 199-6 chr12 127830752 127831124 + 0.833333 NA Intergenic L2a|LINE|L2 -50679 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 147.333-37 chr2 45150462 45150703 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR 104359 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 140.833-43 chr3 125185287 125185629 + 0.833333 NA intron (NM_001195483, intron 3 of 12) L1M4|LINE|L1 25941 NM_001195483 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 119.5-67 chr4 44615106 44615312 + 0.833333 NA Intergenic Intergenic 36432 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 120.333 chr1 27472922 27473177 + 0.833333 NA intron (NM_006990, intron 1 of 8) L1M4|LINE|L1 17118 NM_001201404 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WASP family member 2 protein-coding 132.167-29 chr17 80577306 80577492 + 0.833333 NA intron (NM_020761, intron 1 of 33) L1ME3B|LINE|L1 32561 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 262.167-7 chr14 38667152 38667528 + 0.833333 NA Intergenic L2c|LINE|L2 -215256 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 265.167-6 chr18 1902513 1902918 + 0.833333 NA Intergenic L1M5|LINE|L1 -543086 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 306-14 chr8 83863149 83863541 + 0.833333 NA Intergenic Intergenic -319442 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 149.5-21 chr12 129556557 129557013 + 0.833333 NA intron (NM_133448, intron 2 of 8) MER3|DNA|hAT-Charlie 347240 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 117.167-38 chr2 31486527 31486905 + 0.833333 NA Intergenic FLAM_C|SINE|Alu -71974 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 195.667-36 chr5 173795510 173795925 + 0.833333 NA Intergenic Intergenic -4775 NR_108028 101928154 Hs.366725 NR_108028 LINC01485 - long intergenic non-protein coding RNA 1485 ncRNA 208.667-4 chr1 191581208 191581581 + 0.833333 NA Intergenic L1PA11|LINE|L1 -352896 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 213.167-31 chr8 26357839 26358261 + 0.833333 NA intron (NM_001177591, intron 4 of 9) intron (NM_001177591, intron 4 of 9) 24903 NR_144550 157489 Hs.586388 NR_144550 ENSG00000228451 SDAD1P1 - SDA1 domain containing 1 pseudogene 1 pseudo 131.333-94 chr7 68434549 68434826 + 0.833333 NA Intergenic MER1A|DNA|hAT-Charlie 414434 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 164.167-49 chr4 87739313 87739821 + 0.833333 NA Intergenic L1MA3|LINE|L1 -59987 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 215-7 chr10 74630189 74630582 + 0.833333 NA intron (NM_001369124, intron 8 of 9) L1MC4a|LINE|L1 -101061 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 120.167-52 chr22 40820496 40820660 + 0.833333 NA Intergenic AluSz6|SINE|Alu -1179 NR_104236 10478 Hs.474938 NM_006358 ENSG00000100372 SLC25A17 PMP34 solute carrier family 25 member 17 protein-coding 273.667 chr1 94867972 94868417 + 0.833333 NA intron (NM_001258340, intron 12 of 14) intron (NM_001258340, intron 12 of 14) 43701 NM_001350223 126969 Hs.483423 NM_152369 ENSG00000143036 SLC44A3 CTL3 solute carrier family 44 member 3 protein-coding 140.5-47 chr3 117125182 117125435 + 0.833333 NA Intergenic L4_A_Mam|LINE|RTE-X 203877 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 229.167-16 chr15 84896173 84896729 + 0.833333 NA TTS (NM_201651) TTS (NM_201651) 11789 NM_001287762 9154 Hs.459187 NM_004213 ENSG00000156222 SLC28A1 CNT1|HCNT1 solute carrier family 28 member 1 protein-coding 229-4 chr10 90390456 90390873 + 0.833333 NA Intergenic Intergenic 150141 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 199.333-44 chrX 149165291 149165562 + 0.833333 NA Intergenic L1PREC2|LINE|L1 339880 NM_000202 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 147.5-12 chr10 45504753 45504948 + 0.833333 NA intron (NM_001282866, intron 2 of 7) intron (NM_001282866, intron 2 of 7) 30521 NM_001282866 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 119.333-68 chr4 2568726 2568972 + 0.833333 NA intron (NM_001366318, intron 1 of 20) intron (NM_001366318, intron 1 of 20) 32202 NM_001366318 8603 Hs.652364 NM_003704 ENSG00000125386 FAM193A C4orf8|RES4-22 family with sequence similarity 193 member A protein-coding 160-38 chr17 51981983 51982403 + 0.833333 NA intron (NM_001082533, intron 3 of 9) intron (NM_001082533, intron 3 of 9) 176521 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 221.667-4 chr1 177528222 177528602 + 0.833333 NA Intergenic Intergenic -172112 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 368.833-3 chr7 141284106 141284695 + 0.833333 NA intron (NM_001195278, intron 2 of 3) X7D_LINE|LINE|CR1 210336 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 247.167-4 chr11 113465545 113466008 + 0.833333 NA intron (NM_016574, intron 1 of 6) MIR3|SINE|MIR 9503 NM_016574 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 136.167-74 chr7 120960168 120960436 + 0.833333 NA intron (NM_019071, intron 4 of 11) L2a|LINE|L2 9525 NM_019071 54556 Hs.489811 NM_019071 ENSG00000071243 ING3 Eaf4|ING2|MEAF4|p47ING3 inhibitor of growth family member 3 protein-coding 214.667-27 chr4 123336682 123337099 + 0.833333 NA Intergenic L1PA7|LINE|L1 -59905 NM_199327 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 141.667-79 chr4 64009484 64009776 + 0.833333 NA Intergenic Intergenic 399820 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 135.667-38 chr16 3845729 3846122 + 0.833333 NA intron (NM_004380, intron 2 of 30) L1ME4b|LINE|L1 34195 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 118.667-64 chr2 186907245 186907404 + 0.833333 NA Intergenic Intergenic -58154 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 214.5-28 chr5 44890229 44890543 + 0.833333 NA Intergenic L1MA3|LINE|L1 81439 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 218.667-10 chr12 5081690 5082121 + 0.833333 NA Intergenic HAL1ME|LINE|L1 38026 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 130-44 chr17 61659349 61659792 + 0.833333 NA Intergenic Intergenic -68351 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 171.833-36 chr4 116392240 116392525 + 0.833333 NA Intergenic L1ME1|LINE|L1 92657 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 197.5-31 chr21 35098726 35099154 + 0.833333 NA Intergenic Intergenic -49642 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 152.333-54 chr5 128092691 128092998 + 0.833333 NA intron (NM_001046, intron 1 of 26) intron (NM_001046, intron 1 of 26) 9078 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 139.5-2 chr1 29941266 29941435 + 0.833333 NA Intergenic Intergenic 96262 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 263.833-7 chr2 21777147 21777718 + 0.833333 NA Intergenic L1ME3|LINE|L1 -66780 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 222-35 chr7 84272708 84273078 + 0.833333 NA Intergenic Intergenic -78104 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 148.167-82 chr8 111514772 111515036 + 0.833333 NA Intergenic Intergenic 138265 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 123.333-66 chr20 43884819 43885048 + 0.833333 NA Intergenic HAL1|LINE|L1 -9785 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 129.333-26 chr14 42129840 42130069 + 0.833333 NA Intergenic Intergenic 523098 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 204.834-4 chr15 98087592 98088269 + 0.833333 NA intron (NR_120325, intron 1 of 3) L1M4|LINE|L1 823 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 201.5-2 chr1 105023217 105023534 + 0.833333 NA Intergenic Intergenic 595560 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 337.334-4 chr21 28442825 28443600 + 0.833333 NA Intergenic Intergenic -96106 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 135-7 chr1 214104915 214105180 + 0.833333 NA Intergenic L2b|LINE|L2 116514 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 173.667-48 chr4 113630691 113631081 + 0.833333 NA intron (NM_001221, intron 3 of 18) MLT1N2|LTR|ERVL-MaLR 130852 NM_001321591 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 240.5-25 chr9 4287536 4288110 + 0.833333 NA intron (NM_001042413, intron 1 of 10) intron (NM_001042413, intron 1 of 10) 12245 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 145.667-98 chr8 82813965 82814295 + 0.833333 NA Intergenic L1ME5|LINE|L1 -97974 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 260.5-8 chr17 34013906 34014392 + 0.833333 NA intron (NM_001094, intron 1 of 9) MIR|SINE|MIR 142657 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 218.667-9 chr12 4193307 4193746 + 0.833333 NA Intergenic L1MC2|LINE|L1 -80236 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 214.333-30 chr3 74000001 74000349 + 0.833333 NA Intergenic L2b|LINE|L2 190931 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 131.333-79 chr4 72662216 72662591 + 0.833333 NA Intergenic Intergenic -93182 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 199-44 chr9 86316305 86316587 + 0.833333 NA intron (NM_001185059, intron 17 of 26) MIR3|SINE|MIR -33908 NM_030940 81689 Hs.449291 NM_030940 ENSG00000135070 ISCA1 HBLD2|ISA1|MMDS5|hIscA iron-sulfur cluster assembly 1 protein-coding 167.667-90 chr8 116828013 116828442 + 0.833333 NA Intergenic Intergenic -46197 NR_033886 644660 Hs.706174 NR_033886 ENSG00000253327 RAD21-AS1 C8orf81|NCRNA00255 RAD21 antisense RNA 1 ncRNA 232-14 chr16 71999660 71999962 + 0.833333 NA exon (NM_181536, exon 1 of 30) exon (NM_181536, exon 1 of 30) 167 NM_181536 342372 Hs.675286 NM_181536 ENSG00000277481 PKD1L3 - polycystin 1 like 3, transient receptor potential channel interacting protein-coding 267.167-8 chr14 47883915 47884334 + 0.833333 NA Intergenic L2a|LINE|L2 -89110 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 141.333-74 chr5 15050601 15050817 + 0.833333 NA Intergenic L1MA5|LINE|L1 -178931 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 198-52 chr6 133488288 133488586 + 0.833333 NA intron (NM_172103, intron 12 of 18) L1MA3|LINE|L1 246938 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 149.167-31 chr2 182809499 182809707 + 0.833333 NA Intergenic GA-rich|Low_complexity|Low_complexity 57034 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 156.667-66 chr4 95132959 95133174 + 0.833333 NA intron (NM_001256792, intron 8 of 10) intron (NM_001256792, intron 8 of 10) 41575 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 230-10 chr2 42804832 42805161 + 0.833333 NA Intergenic LTR41C|LTR|ERVL -12413 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 150.167-55 chr5 168510921 168511277 + 0.833333 NA intron (NM_002887, intron 12 of 14) intron (NM_002887, intron 12 of 14) -18206 NM_001355274 345630 Hs.166262 NM_001355274 ENSG00000188573 FBLL1 - fibrillarin like 1 protein-coding 115.833-59 chr5 82007821 82008072 + 0.833333 NA intron (NM_031482, intron 2 of 7) intron (NM_031482, intron 2 of 7) 35923 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 214.833-27 chrX 79025673 79025970 + 0.833333 NA Intergenic L1PA15|LINE|L1 80430 NM_001324225 27334 Hs.296433 NM_014499 ENSG00000078589 P2RY10 LYPSR2|P2Y10 P2Y receptor family member 10 protein-coding 128.667-92 chr5 21585723 21585943 + 0.833333 NA non-coding (NR_027026, exon 5 of 5) non-coding (NR_027026, exon 5 of 5) 126353 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 169.167-22 chr18 66317925 66318268 + 0.833333 NA Intergenic L1MCc|LINE|L1 285994 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 297.5-9 chr4 42691178 42691731 + 0.833333 NA Intergenic Intergenic -34349 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 159.333-33 chr2 37299571 37299895 + 0.833333 NA intron (NM_005813, intron 1 of 17) L1MA4|LINE|L1 17351 NM_005813 23683 Hs.660757 NM_005813 ENSG00000115825 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 302.833-3 chr19 36813281 36813854 + 0.833333 NA intron (NR_040028, intron 2 of 3) L1ME3G|LINE|L1 16004 NR_040028 284408 Hs.570010 NR_040027 ENSG00000267254 ZNF790-AS1 - ZNF790 antisense RNA 1 ncRNA 177.167-14 chr18 2201064 2201427 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR 370260 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 134.667-15 chr10 113437434 113437635 + 0.833333 NA Intergenic MIRc|SINE|MIR -113297 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 130-59 chr2 209033236 209033589 + 0.833333 NA Intergenic Intergenic -390635 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 151.833-27 chr2 39263633 39263894 + 0.833333 NA intron (NM_003618, intron 28 of 33) intron (NM_003618, intron 28 of 33) -19780 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 304.333-11 chr8 68319862 68320358 + 0.833333 NA intron (NR_038877, intron 1 of 2) L1MB8|LINE|L1 -10263 NM_001349478 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 212-2 chr1 184352281 184352668 + 0.833333 NA Intergenic Intergenic -34555 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 144-21 chr16 28164162 28164569 + 0.833333 NA intron (NM_001270940, intron 7 of 24) intron (NM_001270940, intron 7 of 24) 47600 NM_001270940 23214 Hs.460468 NM_015171 ENSG00000169180 XPO6 EXP6|RANBP20 exportin 6 protein-coding 157.667-19 chr12 121733173 121733454 + 0.833333 NA intron (NM_001080825, intron 1 of 11) AluY|SINE|Alu 20561 NM_001080825 144404 Hs.644504 NM_001080825 ENSG00000188735 TMEM120B - transmembrane protein 120B protein-coding 164-28 chr2 35431314 35431593 + 0.833333 NA Intergenic Intergenic -39952 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 157.333-23 chr14 84943101 84943423 + 0.833333 NA Intergenic Intergenic -328670 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 119.167-21 chr14 47685867 47686051 + 0.833333 NA Intergenic L1MA4A|LINE|L1 -11005 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 336-4 chr13 31216554 31217189 + 0.833333 NA intron (NM_194318, intron 2 of 14) L1PA15|LINE|L1 16896 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 213-8 chr12 47611212 47611507 + 0.833333 NA Intergenic Intergenic 94671 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 197.667-27 chr2 39140091 39140500 + 0.833333 NA Intergenic MIR|SINE|MIR -19832 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 143.333-52 chr22 30623471 30623665 + 0.833333 NA intron (NM_000355, intron 8 of 8) intron (NM_000355, intron 8 of 8) -12213 NM_001318371 339665 Hs.660384 NM_001001479 ENSG00000100036 SLC35E4 - solute carrier family 35 member E4 protein-coding 160.333-20 chr15 95099264 95099586 + 0.833333 NA Intergenic L1MB7|LINE|L1 227675 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 216-2 chr1 147422808 147423138 + 0.833333 NA intron (NR_038423, intron 3 of 3) intron (NR_038423, intron 3 of 3) 94902 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 119.167-50 chr20 13086436 13086954 + 0.833333 NA intron (NM_001349945, intron 5 of 12) intron (NM_001349945, intron 5 of 12) 77723 NM_018327 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 123.667-113 chr8 118757385 118757641 + 0.833333 NA Intergenic Intergenic -135550 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 196.167-24 chr4 33685866 33686233 + 0.833333 NA Intergenic Intergenic 353844 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 136.5-85 chr7 44342249 44342559 + 0.833333 NA Intergenic MER77|LTR|ERVL -16773 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 155-55 chr4 114388145 114388368 + 0.833333 NA Intergenic MLT1E2|LTR|ERVL-MaLR -210146 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 226.333-30 chr4 159384081 159384398 + 0.833333 NA Intergenic L1MA7|LINE|L1 116430 NM_001351727 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 115.5-8 chr1 188696638 188696825 + 0.833333 NA Intergenic L1MA4A|LINE|L1 1253103 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 121.333-79 chr4 167997471 167997769 + 0.833333 NA Intergenic Intergenic -94917 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 124.833-23 chr14 86722193 86722393 + 0.833333 NA Intergenic Intergenic -183485 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 122.333-58 chr2 214750382 214750537 + 0.833333 NA intron (NR_104215, intron 5 of 8) L2c|LINE|L2 59224 NR_104215 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 127.333-90 chr5 36754507 36754882 + 0.833333 NA Intergenic Intergenic 122000 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 161.333-2 chr1 168634883 168635126 + 0.833333 NA Intergenic MIRc|SINE|MIR 58399 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 136.333-97 chr8 101923947 101924289 + 0.833333 NA intron (NM_001040624, intron 3 of 7) L1PA16|LINE|L1 -60314 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 128-59 chr20 33003590 33003859 + 0.833333 NA intron (NM_080675, intron 1 of 12) Charlie7a|DNA|hAT-Charlie 709 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 138.167-27 chr16 2385486 2385672 + 0.833333 NA intron (NR_003574, intron 7 of 16) MER77B|LTR|ERVL -43868 NM_001761 899 Hs.1973 NM_001761 ENSG00000162063 CCNF FBX1|FBXO1 cyclin F protein-coding 134-97 chr7 50419353 50419583 + 0.833333 NA Intergenic L1ME1|LINE|L1 30882 NM_001287494 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 127.167-39 chr16 22644242 22644483 + 0.833333 NA Intergenic Intergenic 98664 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 243-16 chr19 55264227 55264643 + 0.833333 NA intron (NM_001297600, intron 6 of 6) (ATTA)n|Simple_repeat|Simple_repeat -5418 NM_014931 22870 Hs.515610 NM_014931 ENSG00000105063 PPP6R1 KIAA1115|PP6R1|SAP190|SAPS1 protein phosphatase 6 regulatory subunit 1 protein-coding 186.333-57 chr9 786121 786606 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR -55334 NM_021951 1761 Hs.98586 NM_021951 ENSG00000137090 DMRT1 CT154|DMT1 doublesex and mab-3 related transcription factor 1 protein-coding 127.167-46 chr2 51257263 51257463 + 0.833333 NA intron (NR_135237, intron 2 of 10) L1MA4A|LINE|L1 224762 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 193-5 chr1 219086782 219087085 + 0.833333 NA intron (NR_038845, intron 3 of 4) intron (NR_038845, intron 3 of 4) 86855 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 137.5-85 chr6 114570603 114571027 + 0.833333 NA Intergenic Intergenic -507938 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 180.333-6 chr1 222533775 222534236 + 0.833333 NA intron (NM_024746, intron 5 of 8) L1ME3|LINE|L1 14099 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 138.833-28 chr16 79934023 79934359 + 0.833333 NA Intergenic Intergenic 138942 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 150.167-34 chr2 195807601 195807902 + 0.833333 NA intron (NM_018897, intron 53 of 64) intron (NM_018897, intron 53 of 64) 150525 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 275.333-17 chr2 176863306 176863863 + 0.833333 NA Intergenic L1MD|LINE|L1 225830 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 238.167-9 chr15 77219123 77219610 + 0.833333 NA intron (NM_024776, intron 4 of 7) intron (NM_024776, intron 4 of 7) 6038 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 271.667-6 chr17 27325058 27325492 + 0.833333 NA Intergenic Intergenic 31161 NM_001348350 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 145-43 chr2 13058167 13058369 + 0.833333 NA Intergenic Intergenic -51255 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 160.833-23 chr17 11789406 11789712 + 0.833333 NA intron (NM_001372, intron 41 of 68) L1ME3A|LINE|L1 -93343 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 197.167-48 chr5 145722071 145722399 + 0.833333 NA Intergenic L1MC4a|LINE|L1 113107 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 162.333-60 chr5 139705689 139705980 + 0.833333 NA Intergenic Intergenic 30391 NM_001317211 51523 Hs.189119 NM_016463 ENSG00000171604 CXXC5 CF5|HSPC195|RINF|WID CXXC finger protein 5 protein-coding 230.833-15 chr3 73543406 73543747 + 0.833333 NA intron (NR_121660, intron 1 of 1) intron (NR_121660, intron 1 of 1) 18004 NM_001303140 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 168.333-23 chr17 47758444 47758780 + 0.833333 NA Intergenic L1MC5a|LINE|L1 25376 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 196.167-27 chr4 115298058 115298419 + 0.833333 NA Intergenic L2c|LINE|L2 -184618 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 256-5 chr14 80712947 80713590 + 0.833333 NA intron (NM_152446, intron 19 of 24) intron (NM_152446, intron 19 of 24) 228470 NR_157142 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 260.833-13 chr6 64825756 64826181 + 0.833333 NA intron (NM_001292009, intron 19 of 43) intron (NM_001292009, intron 19 of 43) -475450 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 160.667-50 chr20 44138793 44139132 + 0.833333 NA intron (NM_020433, intron 2 of 5) intron (NM_020433, intron 2 of 5) 48226 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 258.833-12 chr21 33719798 33720321 + 0.833333 NA intron (NM_001001132, intron 2 of 29) intron (NM_001001132, intron 2 of 29) 77558 NM_001331011 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 183.5-27 chr2 16340883 16341256 + 0.833333 NA Intergenic HSMAR1|DNA|TcMar-Mariner 290642 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 253-2 chr11 34411337 34411810 + 0.833333 NA Intergenic MER21B|LTR|ERVL -27361 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 224 chr1 104826959 104827256 + 0.833333 NA Intergenic Intergenic 754084 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 138.167-11 chr11 110017728 110017972 + 0.833333 NA Intergenic Intergenic -75542 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 145.5-66 chr5 107749466 107749769 + 0.833333 NA Intergenic L3b|LINE|CR1 -78680 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 158.5-20 chr13 96733312 96733611 + 0.833333 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 250711 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 148.5-20 chr14 35514735 35515229 + 0.833333 NA Intergenic Intergenic -19182 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 187.833-11 chr12 23188353 23188722 + 0.833333 NA non-coding (NR_120471, exon 3 of 5) non-coding (NR_120471, exon 3 of 5) 12901 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 214.5-12 chr16 13547124 13547597 + 0.833333 NA Intergenic MLT2B1|LTR|ERVL -372797 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 237.5-4 chr10 89589670 89590131 + 0.833333 NA intron (NM_148977, intron 5 of 6) intron (NM_148977, intron 5 of 6) 2927 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 199.834 chr16 11737664 11738278 + 0.833333 NA intron (NR_136673, intron 1 of 9) L1MEc|LINE|L1 4886 NM_001324025 51061 Hs.313847 NM_015914 ENSG00000153066 TXNDC11 EFP1 thioredoxin domain containing 11 protein-coding 137.333-84 chr6 48721344 48721585 + 0.833333 NA Intergenic L1MA4|LINE|L1 -652775 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 225.333-10 chr16 7010361 7010643 + 0.833333 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 236693 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 156.5-6 chr1 86053221 86053408 + 0.833333 NA intron (NM_152890, intron 10 of 59) intron (NM_152890, intron 10 of 59) 103157 NM_001349955 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 221.667-22 chr4 33142117 33142605 + 0.833333 NA Intergenic Intergenic 791323 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 218.667-6 chr10 127335211 127335548 + 0.833333 NA intron (NM_001290223, intron 29 of 51) intron (NM_001290223, intron 29 of 51) -138788 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 155.167-49 chr8 125061031 125061375 + 0.833333 NA intron (NM_014846, intron 11 of 28) intron (NM_014846, intron 11 of 28) 30589 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 156-56 chr3 152398924 152399391 + 0.833333 NA intron (NM_001314057, intron 3 of 11) L2b|LINE|L2 -58167 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 115.167-48 chr18 7094823 7095029 + 0.833333 NA intron (NM_005559, intron 1 of 62) L1M4|LINE|L1 22871 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 277.333-13 chr5 27491097 27491769 + 0.833333 NA intron (NR_038848, intron 3 of 4) ERV3-16A3_I-int|LTR|ERVL 19141 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 127.833-62 chr5 132874060 132874309 + 0.833333 NA intron (NM_052971, intron 2 of 2) intron (NM_052971, intron 2 of 2) 516 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 163.833-40 chr4 18731643 18731923 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -709908 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 168.833-31 chr21 34765671 34765895 + 0.833333 NA intron (NR_038885, intron 1 of 2) intron (NR_038885, intron 1 of 2) 19958 NR_038886 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 lincRNA-uc002yug.2 long intergenic non-protein coding RNA 1426 ncRNA 119.333-40 chr18 2916075 2916301 + 0.833333 NA TTS (NM_014646) TTS (NM_014646) 30435 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 210.333-17 chr2 56737488 56737793 + 0.833333 NA Intergenic Intergenic -551870 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 143-50 chr3 144636223 144636526 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL 663293 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 167.167-38 chr20 31055941 31056319 + 0.833333 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -201534 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 184.333-52 chr6 51736548 51736849 + 0.833333 NA intron (NM_170724, intron 60 of 60) intron (NM_170724, intron 60 of 60) 114828 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 140.833-5 chr10 54572435 54572699 + 0.833333 NA intron (NR_134503, intron 2 of 5) intron (NR_134503, intron 2 of 5) 35390 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 179.667-54 chr8 100435612 100436062 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR 53074 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 190.5-20 chr15 39703608 39704087 + 0.833333 NA intron (NM_152597, intron 10 of 11) intron (NM_152597, intron 10 of 11) 78994 NM_001324338 161835 Hs.129598 NM_152597 ENSG00000150667 FSIP1 HSD10 fibrous sheath interacting protein 1 protein-coding 251.667-16 chr5 37696594 37696947 + 0.833333 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 138052 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 217-19 chr21 20847651 20848076 + 0.833333 NA Intergenic Intergenic -44755 NR_109788 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 229.667-38 chr9 131712561 131713065 + 0.833333 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) -2971 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 183.167-7 chr10 81552681 81553036 + 0.833333 NA Intergenic L1PA8A|LINE|L1 -322336 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 140.167-12 chr12 11478020 11478436 + 0.833333 NA intron (NR_148969, intron 2 of 4) L1ME3B|LINE|L1 8450 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 113.667-39 chr14 65490077 65490260 + 0.833333 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 19066 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 156.5-70 chr5 83035361 83035646 + 0.833333 NA Intergenic Intergenic 28834 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 177.5-66 chr5 141985219 141985572 + 0.833333 NA intron (NM_001201365, intron 8 of 8) L1MC5a|LINE|L1 16290 NM_183401 9604 Hs.483616 NM_004290 ENSG00000013561 RNF14 ARA54|HFB30|HRIHFB2038|TRIAD2 ring finger protein 14 protein-coding 151.5-30 chr18 24958635 24958833 + 0.833333 NA intron (NR_146903, intron 1 of 1) intron (NR_146903, intron 1 of 1) 29245 NR_146903 105372030 NR_146903 LINC01894 - long intergenic non-protein coding RNA 1894 ncRNA 131.667-129 chr8 139307352 139307572 + 0.833333 NA Intergenic Intergenic -393421 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 155.167-8 chr11 115212217 115212472 + 0.833333 NA intron (NM_001301044, intron 7 of 10) intron (NM_001301044, intron 7 of 10) -121233 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 233-6 chr11 41996389 41996835 + 0.833333 NA Intergenic Intergenic 88846 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 136.5-71 chr5 24217708 24217950 + 0.833333 NA Intergenic AluSz6|SINE|Alu 266481 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 162.833-21 chr2 29213672 29213915 + 0.833333 NA intron (NM_004304, intron 24 of 28) AluJo|SINE|Alu 10107 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 267.833-16 chr8 41842718 41843197 + 0.833333 NA intron (NM_001142446, intron 1 of 42) AluSx|SINE|Alu -45335 NM_020475 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 265.167-13 chr8 47985893 47986422 + 0.833333 NA Intergenic MER31-int|LTR|ERV1 -22274 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 172-61 chr6 66576405 66576730 + 0.833333 NA Intergenic Intergenic 788688 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 230.667-18 chr4 25973508 25973974 + 0.833333 NA Intergenic Intergenic 59549 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 150-28 chr16 2216404 2216617 + 0.833333 NA Intergenic AluJr4|SINE|Alu -1670 NM_001042371 283871 Hs.442634 NM_001042371 ENSG00000184207 PGP AUM|G3PP|PGPase phosphoglycolate phosphatase protein-coding 170-37 chr2 41985389 41985844 + 0.833333 NA Intergenic L2c|LINE|L2 -31810 NR_161189 400950 Hs.738713 NM_001242815 ENSG00000205086 C2orf91 - chromosome 2 open reading frame 91 ncRNA 259-5 chr14 46425642 46426358 + 0.833333 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -45359 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 289.333-4 chr15 59262037 59262635 + 0.833333 NA intron (NM_004998, intron 2 of 27) AluJr|SINE|Alu 55493 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 175.5-5 chr1 190468242 190468583 + 0.833333 NA intron (NM_199051, intron 1 of 7) intron (NM_199051, intron 1 of 7) 7598 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 173-41 chr5 41278408 41278638 + 0.833333 NA Intergenic Intergenic -17054 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 128.5-38 chr2 80159147 80159508 + 0.833333 NA intron (NM_001282598, intron 7 of 17) L1MD1|LINE|L1 145425 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 225.167-3 chr10 6784420 6784704 + 0.833333 NA intron (NR_038291, intron 2 of 4) AluSz|SINE|Alu 4964 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 277.667-5 chr2 41911137 41911543 + 0.833333 NA Intergenic L1ME3G|LINE|L1 22383 NR_110263 101929723 Hs.369330 NR_110262 ENSG00000234362 LINC01914 - long intergenic non-protein coding RNA 1914 ncRNA 181-49 chr5 11036193 11036441 + 0.833333 NA intron (NM_001288715, intron 15 of 20) LTR37-int|LTR|ERV1 -275083 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 178.167-5 chr10 88241057 88241349 + 0.833333 NA Intergenic L1M5|LINE|L1 342115 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 245.167-11 chr4 37954268 37954744 + 0.833333 NA intron (NM_001253912, intron 2 of 20) MLT1L|LTR|ERVL-MaLR -5892 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 211.667-34 chr6 42484907 42485200 + 0.833333 NA Intergenic MER46C|DNA|TcMar-Tigger -32829 NM_033502 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 137.333-32 chr15 66595660 66595899 + 0.833333 NA intron (NR_110372, intron 1 of 4) Tigger2b_Pri|DNA|TcMar-Tigger 13589 NR_110372 102723165 Hs.636703 NR_110372 ENSG00000259471 LINC01169 - long intergenic non-protein coding RNA 1169 ncRNA 157.667-14 chr11 94749104 94749399 + 0.833333 NA Intergenic MLT2B3|LTR|ERVL -8896 NR_135096 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 167.667-47 chr2 155300976 155301313 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 602449 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 116.667-107 chr8 49146101 49146313 + 0.833333 NA Intergenic L2c|LINE|L2 73863 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 147.5-26 chr14 28726006 28726228 + 0.833333 NA intron (NR_125758, intron 6 of 6) intron (NR_125758, intron 6 of 6) 39202 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 230-5 chr12 16901725 16902008 + 0.833333 NA Intergenic Intergenic -86881 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 211.167-19 chr3 82004534 82004917 + 0.833333 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 18583 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 154.667-62 chr6 137182828 137183302 + 0.833333 NA Intergenic MER41-int|LTR|ERV1 -9421 NM_181310 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 172.167-28 chr20 60211660 60211950 + 0.833333 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) 73313 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 120.5-36 chr15 80313182 80313418 + 0.833333 NA intron (NR_033833, intron 1 of 2) MLT1K|LTR|ERVL-MaLR 28505 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 280.667-16 chr4 11174022 11174457 + 0.833333 NA Intergenic Intergenic -194588 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 216.333-2 chr1 60406245 60406671 + 0.833333 NA Intergenic Intergenic 216227 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 132.333-55 chr2 81365474 81365661 + 0.833333 NA Intergenic Intergenic 101379 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 141.167-50 chr3 5804841 5805110 + 0.833333 NA Intergenic Intergenic -554720 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 148.167-61 chr5 30547457 30547734 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -646091 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 147-53 chr3 97060423 97060722 + 0.833333 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 245978 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 163-16 chr13 111160132 111160453 + 0.833333 NA intron (NM_001354057, intron 3 of 18) L1MA7|LINE|L1 6626 NM_001354060 8874 Hs.508738 NM_003899 ENSG00000102606 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor 7 protein-coding 225.667-31 chr8 35562430 35562893 + 0.833333 NA intron (NM_001322818, intron 2 of 16) L1MA4|LINE|L1 18269 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 138.5-66 chr6 118720026 118720358 + 0.833333 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat -10117 NM_001178035 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 308.333-5 chr2 51694007 51694468 + 0.833333 NA intron (NR_135237, intron 5 of 10) AluSx|SINE|Alu 661636 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 166.667-67 chr8 128993467 128993842 + 0.833333 NA Intergenic Intergenic -27653 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 334.667-7 chr5 266705 267132 + 0.833333 NA Intergenic Intergenic 4606 NR_104613 102467073 Hs.368328 NR_104613 HRAT5 - heart tissue-associated transcript 5 ncRNA 165.833-3 chr1 109556616 109556857 + 0.833333 NA intron (NM_006496, intron 1 of 8) L2|LINE|L2 8121 NM_006496 2773 Hs.73799 NM_006496 ENSG00000065135 GNAI3 87U6|ARCND1 G protein subunit alpha i3 protein-coding 183.5-26 chr2 15246154 15246606 + 0.833333 NA intron (NR_052013, intron 44 of 50) L2c|LINE|L2 314954 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 193.5-26 chr2 64556358 64556692 + 0.833333 NA intron (NM_001002243, intron 2 of 8) intron (NM_001002243, intron 2 of 8) 31012 NR_039633 100616419 NR_039633 ENSG00000283204 MIR4434 - microRNA 4434 ncRNA 227.667-8 chr14 50880370 50880838 + 0.833333 NA intron (NM_001206673, intron 4 of 12) intron (NM_001206673, intron 4 of 12) 8444 NM_181533 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 152.167-24 chr18 61083964 61084326 + 0.833333 NA Intergenic Intergenic -249285 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 236.667-25 chr3 133353594 133354102 + 0.833333 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) -46208 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 180.667-69 chr7 110505922 110506219 + 0.833333 NA Intergenic Intergenic -545857 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 169.5-27 chr2 30985541 30985929 + 0.833333 NA intron (NM_001253826, intron 3 of 15) intron (NM_001253826, intron 3 of 15) 143905 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 155.833-37 chr20 52730814 52731050 + 0.833333 NA Intergenic L2a|LINE|L2 110094 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 173.333-33 chr20 39628435 39628714 + 0.833333 NA Intergenic Intergenic -375887 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 205.333-14 chr15 23650025 23650540 + 0.833333 NA Intergenic Intergenic -2415 NM_019066 54551 Hs.141496 NM_019066 ENSG00000254585 MAGEL2 NDNL1|PWLS|SHFYNG|nM15 MAGE family member L2 protein-coding 114.5-34 chr14 84428177 84428403 + 0.833333 NA Intergenic Intergenic -843642 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 126.5-31 chr15 63057254 63057560 + 0.833333 NA intron (NM_000366, intron 3 of 9) L2b|LINE|L2 -8020 NR_147233 111064646 Hs.602995 NR_147233 TPM1-AS TPM1-AS1 TPM1 antisense RNA ncRNA 176.833-34 chr8 85895009 85895345 + 0.833333 NA Intergenic L1MA8|LINE|L1 -67235 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 165.167-21 chr2 41346495 41346728 + 0.833333 NA Intergenic Intergenic -530944 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 146.167-67 chr7 43810748 43811292 + 0.833333 NA Intergenic HERVIP10F-int|LTR|ERV1 52340 NM_000712 644 Hs.488143 NM_000712 ENSG00000106605 BLVRA BLVR|BVR|BVRA biliverdin reductase A protein-coding 246.833-3 chr16 13628846 13629245 + 0.833333 NA Intergenic Intergenic -291112 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 125.833-29 chr17 66932616 66932790 + 0.833333 NA Intergenic AluJb|SINE|Alu -32004 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 175.667-7 chr1 211556923 211557249 + 0.833333 NA Intergenic MLT1A1|LTR|ERVL-MaLR 22075 NM_021194 7779 Hs.519469 NM_021194 ENSG00000170385 SLC30A1 ZNT1|ZRC1 solute carrier family 30 member 1 protein-coding 124.333-25 chr13 85870966 85871140 + 0.833333 NA Intergenic L1MEg|LINE|L1 -71634 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 116-74 chr5 44093661 44093858 + 0.833333 NA Intergenic Intergenic -294973 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 117.333-62 chr21 25354432 25354620 + 0.833333 NA Intergenic L1PA16|LINE|L1 77175 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 146.667-75 chr6 39666431 39666742 + 0.833333 NA intron (NM_001289020, intron 3 of 21) Ricksha|DNA|MULE-MuDR 58822 NM_001289021 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 207.333-3 chr1 40045884 40046290 + 0.833333 NA intron (NM_001350484, intron 2 of 13) intron (NM_001350484, intron 2 of 13) 5236 NM_001350481 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 153.167-36 chr4 32380301 32380577 + 0.833333 NA Intergenic L2a|LINE|L2 29401 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 136.167-5 chr1 91728420 91728822 + 0.833333 NA intron (NR_036634, intron 7 of 17) intron (NR_036634, intron 7 of 17) 157530 NM_001195683 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 171.833-44 chr8 19882193 19882731 + 0.833333 NA Intergenic AluSz6|SINE|Alu -56791 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 153.833-49 chr5 36053048 36053410 + 0.833333 NA intron (NM_001168316, intron 1 of 5) LTR53-int|LTR|ERVL 13653 NM_001168316 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 212-42 chr9 16793052 16793417 + 0.833333 NA intron (NM_017637, intron 1 of 6) intron (NM_017637, intron 1 of 6) 66420 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 118.167-42 chr3 5725703 5725883 + 0.833333 NA Intergenic MIRb|SINE|MIR -475538 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 134.167-49 chr2 148734556 148734872 + 0.833333 NA intron (NM_015630, intron 2 of 13) L1MD2|LINE|L1 89963 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 264.167-11 chr16 86270757 86271141 + 0.833333 NA intron (NR_104139, intron 2 of 5) MIR|SINE|MIR 15298 NR_104139 101154687 Hs.640512 NR_104139 LINC01081 TCONS00024764|TCONS_00024764 long intergenic non-protein coding RNA 1081 ncRNA 241.5-30 chr9 99644087 99644497 + 0.833333 NA intron (NR_109802, intron 3 of 6) intron (NR_109802, intron 3 of 6) 175597 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 133.167-45 chr4 86625904 86626239 + 0.833333 NA intron (NM_080685, intron 1 of 47) intron (NM_080685, intron 1 of 47) 31756 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 214-23 chr2 81425824 81426176 + 0.833333 NA Intergenic Intergenic 40946 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 141.333-31 chr14 56617431 56617931 + 0.833333 NA intron (NM_017799, intron 9 of 15) intron (NM_017799, intron 9 of 15) 37883 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 225.667-3 chr10 57114046 57114611 + 0.833333 NA Intergenic Intergenic 190231 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 115.167-38 chr15 67705600 67705806 + 0.833333 NA intron (NM_002757, intron 16 of 20) AluSp|SINE|Alu -119806 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 187.667-23 chr15 91293194 91293457 + 0.833333 NA 3' UTR (NM_001323031, exon 13 of 13) 3' UTR (NM_001323031, exon 13 of 13) -170014 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 209.833-12 chr16 82741786 82742162 + 0.833333 NA intron (NM_001220488, intron 2 of 14) L1ME4a|LINE|L1 -31345 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 190.167-46 chr8 26057395 26057732 + 0.833333 NA Intergenic Intergenic -12150 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 161.333-44 chr2 210044232 210044470 + 0.833333 NA intron (NM_001307976, intron 6 of 13) L1MEg|LINE|L1 14429 NR_110291 101928020 Hs.635556 NR_110291 LOC101928020 - uncharacterized LOC101928020 ncRNA 125.333-82 chr3 130294683 130294886 + 0.833333 NA Intergenic L1M5|LINE|L1 -50732 NR_022012 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 254.5-5 chr2 134309840 134310194 + 0.833333 NA intron (NM_001371457, intron 3 of 16) intron (NM_001371457, intron 3 of 16) 55945 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 153.167-45 chr5 174125464 174125685 + 0.833333 NA Intergenic Intergenic 79868 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 124-87 chr7 15475737 15476100 + 0.833333 NA intron (NM_001004320, intron 3 of 12) intron (NM_001004320, intron 3 of 12) 86097 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 137-88 chr7 77785740 77786045 + 0.833333 NA Intergenic Intergenic 12542 NM_032936 85025 Hs.19025 NM_032936 ENSG00000135211 TMEM60 C7orf35|DC32 transmembrane protein 60 protein-coding 163.5-11 chr10 104409758 104409972 + 0.833333 NA intron (NM_001008723, intron 15 of 17) intron (NM_001008723, intron 15 of 17) 56032 NM_001008723 159686 Hs.253576 NM_001008723 ENSG00000120051 CFAP58 C10orf80|CCDC147|bA127L20.4|bA127L20.5|bA554P13.1 cilia and flagella associated protein 58 protein-coding 188.167-12 chr17 52974096 52974450 + 0.833333 NA Intergenic L1MA8|LINE|L1 -11232 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 224.167-14 chr2 187261255 187261573 + 0.833333 NA Intergenic Intergenic 186838 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 282.333-16 chr6 88739481 88740090 + 0.833333 NA intron (NM_001286428, intron 11 of 13) intron (NM_001286428, intron 11 of 13) -200416 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 263.667-18 chr7 7690673 7691106 + 0.833333 NA intron (NM_002947, intron 2 of 7) UCON74|DNA?|DNA? 27718 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 125.833-39 chr2 66137698 66137955 + 0.833333 NA Intergenic Intergenic 220502 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 247.5-16 chr2 60579264 60579861 + 0.833333 NA Intergenic Intergenic -25908 NM_138559 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 241.667-39 chr8 81839444 81839946 + 0.833333 NA exon (NM_022133, exon 3 of 9) exon (NM_022133, exon 3 of 9) 2490 NM_152836 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 170-27 chr16 59261535 59261887 + 0.833333 NA Intergenic Intergenic 493480 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 271.167-19 chr8 106466480 106467081 + 0.833333 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 18856 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 163.167-11 chr14 79965329 79965561 + 0.833333 NA Intergenic Intergenic -245974 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 162.833-6 chr11 27289470 27289735 + 0.833333 NA Intergenic Intergenic -69489 NR_125766 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 155.5-13 chr14 42840912 42841126 + 0.833333 NA Intergenic L1MA1|LINE|L1 1234163 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 246.667 chr1 71594181 71594846 + 0.833333 NA intron (NM_173808, intron 5 of 6) intron (NM_173808, intron 5 of 6) 242499 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 244.333-25 chr5 149146493 149146876 + 0.833333 NA intron (NM_001370418, intron 1 of 18) L1PA16|LINE|L1 4953 NM_001370418 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 284.333-5 chr22 36462840 36463265 + 0.833333 NA Intergenic AluSz|SINE|Alu 18588 NM_012473 25828 Hs.211929 NM_012473 ENSG00000100348 TXN2 COXPD29|MT-TRX|MTRX|TRX2|TXN thioredoxin 2 protein-coding 135.167-62 chr22 27866976 27867167 + 0.833333 NA intron (NM_001284278, intron 8 of 11) intron (NM_001284278, intron 8 of 11) 52143 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 248.167-24 chr7 7171179 7171597 + 0.833333 NA Intergenic L1MB4|LINE|L1 -11227 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 131.667-65 chr2 232612296 232612477 + 0.833333 NA intron (NM_001243252, intron 1 of 3) L1ME3B|LINE|L1 6329 NM_001243252 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 133.5-39 chr3 24411741 24412129 + 0.833333 NA intron (NM_001354709, intron 1 of 10) intron (NM_001354709, intron 1 of 10) -82152 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 168.333-18 chr14 76309271 76309650 + 0.833333 NA Intergenic Intergenic -61887 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 171.667-40 chr2 134800262 134800530 + 0.833333 NA Intergenic MER57C1|LTR|ERV1 -38220 NM_001307983 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 183.333-20 chr14 47294195 47294622 + 0.833333 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 48838 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 183.167 chr1 71626521 71626870 + 0.833333 NA intron (NM_173808, intron 4 of 6) L1PA4|LINE|L1 210317 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 157-6 chr1 119251705 119252057 + 0.833333 NA intron (NR_125975, intron 4 of 6) intron (NR_125975, intron 4 of 6) -76371 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 135.667-81 chr4 135328195 135328483 + 0.833333 NA Intergenic (TATATC)n|Simple_repeat|Simple_repeat -204780 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 207.167-6 chr11 22400997 22401504 + 0.833333 NA Intergenic (TACA)n|Simple_repeat|Simple_repeat 62869 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 198.833-30 chr9 101710394 101710902 + 0.833333 NA intron (NM_133445, intron 1 of 8) intron (NM_133445, intron 1 of 8) 27932 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 129.5-3 chr1 80046955 80047246 + 0.833333 NA Intergenic Intergenic -488655 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 147.167-53 chr5 158372543 158372811 + 0.833333 NA intron (NR_109888, intron 1 of 6) intron (NR_109888, intron 1 of 6) 37096 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 163.5-12 chr11 33325351 33325616 + 0.833333 NA intron (NM_001278162, intron 2 of 15) Charlie17|DNA|hAT-Charlie -50625 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 145-42 chr18 80151875 80152192 + 0.833333 NA intron (NR_028340, intron 1 of 2) L1PB4|LINE|L1 4109 NR_028339 100130522 Hs.352602 NM_001145731 ENSG00000267270 PARD6G-AS1 - PARD6G antisense RNA 1 ncRNA 146.667-64 chr4 38489973 38490292 + 0.833333 NA intron (NR_110951, intron 2 of 7) intron (NR_110951, intron 2 of 7) -19635 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 152.167-43 chr3 123917415 123917677 + 0.833333 NA intron (NM_001366336, intron 8 of 8) L1ME4a|LINE|L1 -33214 NM_053027 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 195.333-18 chr19 39985534 39985795 + 0.833333 NA Intergenic L1MA4A|LINE|L1 -11396 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 212.5-4 chr12 43284049 43284528 + 0.833333 NA Intergenic Intergenic 128973 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 243.833-3 chr1 182550438 182550831 + 0.833333 NA intron (NM_001366934, intron 18 of 22) intron (NM_001366934, intron 18 of 22) 38622 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 126.167-88 chr8 71672408 71672643 + 0.833333 NA Intergenic Intergenic -124431 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 171.667-60 chr4 89363279 89363666 + 0.833333 NA Intergenic Intergenic -55672 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 121.667-20 chr12 21473302 21473539 + 0.833333 NA intron (NM_002907, intron 12 of 14) Tigger3a|DNA|TcMar-Tigger 28215 NM_002907 5965 Hs.235069 NM_002907 ENSG00000004700 RECQL RECQL1|RecQ1 RecQ like helicase protein-coding 206.333-9 chr14 52085684 52086055 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -16810 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 154.667-43 chr20 49711024 49711305 + 0.833333 NA intron (NM_004776, intron 1 of 8) intron (NM_004776, intron 1 of 8) 2714 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 130.333-66 chr4 39022667 39022941 + 0.833333 NA intron (NM_001303228, intron 1 of 6) intron (NM_001303228, intron 1 of 6) 9605 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 155.667-69 chr6 153734641 153734963 + 0.833333 NA Intergenic Intergenic -275694 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 228.667-7 chr11 28255866 28256279 + 0.833333 NA intron (NM_001113528, intron 4 of 6) L1MA2|LINE|L1 147684 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 142.667-63 chr22 27034335 27034522 + 0.833333 NA Intergenic Intergenic 26090 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 336.333 chr21 20288810 20289725 + 0.833333 NA Intergenic Intergenic -30582 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 231.667-12 chr14 43889813 43890176 + 0.833333 NA Intergenic Intergenic 617289 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 139.833-27 chr16 11867533 11867749 + 0.833333 NA TTS (NM_001130006) TTS (NM_001130006) -16099 NM_015659 26156 Hs.401842 NM_015659 ENSG00000171490 RSL1D1 CSIG|L12|PBK1|UTP30 ribosomal L1 domain containing 1 protein-coding 187.5-2 chr1 84107119 84107396 + 0.833333 NA intron (NM_002731, intron 1 of 9) L1PREC2|LINE|L1 29178 NM_207578 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 199.833-31 chr7 71040341 71040724 + 0.833333 NA Intergenic Intergenic -91612 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 218.5-4 chr10 55364160 55364734 + 0.833333 NA intron (NM_001354404, intron 2 of 34) L1MEf|LINE|L1 -234595 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 199.667-51 chr5 90538375 90538707 + 0.833333 NA Intergenic L1MB5|LINE|L1 -8957 NM_198273 116068 Hs.136235 NM_198273 ENSG00000176018 LYSMD3 - LysM domain containing 3 protein-coding 222-17 chr18 28653499 28653772 + 0.833333 NA Intergenic (A)n|Simple_repeat|Simple_repeat -476505 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 152.167-49 chr4 80312911 80313231 + 0.833333 NA Intergenic Intergenic -22649 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 142.333-79 chr4 88593430 88593713 + 0.833333 NA intron (NM_001271602, intron 1 of 24) intron (NM_001271602, intron 1 of 24) 1091 NM_014606 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 234-37 chr8 120983431 120983887 + 0.833333 NA Intergenic Intergenic -171613 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 206.833-19 chr4 38941512 38941776 + 0.833333 NA intron (NM_001350633, intron 12 of 12) intron (NM_001350633, intron 12 of 12) 73612 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 164.167-67 chrX 101511251 101511552 + 0.833333 NA intron (NR_045864, intron 11 of 12) HAL1|LINE|L1 23357 NM_001256155 100131755 Hs.729062 NM_152583 ENSG00000196440 ARMCX4 CXorf35|GASP4 armadillo repeat containing X-linked 4 protein-coding 202.833-15 chr2 103010975 103011341 + 0.833333 NA Intergenic Intergenic -26729 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 160-49 chr21 28984794 28985090 + 0.833333 NA intron (NM_015565, intron 3 of 29) intron (NM_015565, intron 3 of 29) 7935 NM_015565 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 141-59 chr3 131545964 131546159 + 0.833333 NA intron (NM_130808, intron 14 of 15) AluSc5|SINE|Alu -43090 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 164.667-57 chr5 97877285 97877615 + 0.833333 NA intron (NR_146299, intron 1 of 2) intron (NR_146299, intron 1 of 2) 36692 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 176.333-44 chr4 40157014 40157272 + 0.833333 NA 3' UTR (NM_018177, exon 18 of 18) 3' UTR (NM_018177, exon 18 of 18) -33937 NM_001278368 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 150.333-11 chr10 57951035 57951232 + 0.833333 NA Intergenic Intergenic 316761 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 178.5-13 chr11 4452780 4453142 + 0.833333 NA Intergenic MER50|LTR|ERV1 3666 NM_001005172 119774 Hs.553568 NM_001005172 ENSG00000181963 OR52K2 OR11-7 olfactory receptor family 52 subfamily K member 2 protein-coding 273.667-17 chr3 114570741 114571316 + 0.833333 NA intron (NR_121662, intron 3 of 6) UCON27|Unknown|Unknown 53178 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 197.5-13 chr11 41536771 41537277 + 0.833333 NA Intergenic L2a|LINE|L2 -77372 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 245.5-25 chr7 37234621 37235093 + 0.833333 NA intron (NM_001206480, intron 7 of 21) intron (NM_001206480, intron 7 of 21) 118811 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 192.333-57 chr8 140594652 140595229 + 0.833333 NA intron (NM_001164623, intron 1 of 17) intron (NM_001164623, intron 1 of 17) 40693 NM_001164623 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 157.167-35 chr20 9071232 9071698 + 0.833333 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) 2411 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 266.833-4 chr2 45829302 45829848 + 0.833333 NA intron (NM_005400, intron 1 of 14) HAL1ME|LINE|L1 177900 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 179.667-53 chr8 87782479 87782860 + 0.833333 NA Intergenic AluY|SINE|Alu 91346 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 127.333-6 chr1 160391868 160392059 + 0.833333 NA Intergenic L1M4|LINE|L1 -8601 NM_020335 57216 Hs.99477 NM_020335 ENSG00000162738 VANGL2 LPP1|LTAP|STB1|STBM|STBM1 VANGL planar cell polarity protein 2 protein-coding 215.667-32 chr3 172081011 172081416 + 0.833333 NA intron (NM_001135095, intron 1 of 25) intron (NM_001135095, intron 1 of 25) 40682 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 223-24 chr5 2787852 2788490 + 0.833333 NA Intergenic Intergenic 36040 NM_001306150 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 154.167-51 chr4 148703529 148703774 + 0.833333 NA Intergenic Intergenic 238727 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 244.833-9 chr2 200599408 200599996 + 0.833333 NA exon (NM_001159, exon 5 of 35) exon (NM_001159, exon 5 of 35) 13688 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 263.5-16 chr22 25618111 25618577 + 0.833333 NA intron (NM_001362778, intron 2 of 19) L1MEc|LINE|L1 53669 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 184.333-57 chr7 25710264 25710581 + 0.833333 NA intron (NR_157808, intron 1 of 4) L1MD3|LINE|L1 -39691 NR_157816 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 168.833-18 chr13 98940963 98941200 + 0.833333 NA intron (NM_001366682, intron 2 of 53) L2c|LINE|L2 36983 NM_001366682 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 233.5-30 chr8 139691457 139691974 + 0.833333 NA intron (NR_104210, intron 1 of 3) L1ME4a|LINE|L1 11408 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 207.333-48 chr7 27908439 27908970 + 0.833333 NA intron (NM_175061, intron 2 of 4) LTR54|LTR|ERV1 168609 NM_001079864 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 128.167-83 chr8 81022714 81023205 + 0.833333 NA intron (NM_018440, intron 3 of 8) intron (NM_018440, intron 3 of 8) 89109 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 141.167-63 chr5 153555112 153555426 + 0.833333 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 63097 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 149.833-45 chr6 56960705 56961101 + 0.833333 NA intron (NM_001318539, intron 1 of 3) intron (NM_001318539, intron 1 of 3) 5796 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 150.5-66 chr5 92851546 92851822 + 0.833333 NA Intergenic Intergenic 719659 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 170.667-70 chr7 37208547 37208910 + 0.833333 NA intron (NM_001206480, intron 13 of 21) intron (NM_001206480, intron 13 of 21) 144940 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 224.667-14 chr2 62327344 62327801 + 0.833333 NA Intergenic MER112|DNA|hAT-Charlie 112051 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 129.167-3 chr1 69799190 69799364 + 0.833333 NA intron (NM_001370785, intron 4 of 26) L1PB4|LINE|L1 -120045 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 206.833-11 chr2 5824285 5824682 + 0.833333 NA Intergenic L1MEf|LINE|L1 -11887 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 161-7 chr10 60369877 60370364 + 0.833333 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 19755 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 157-54 chr3 12432550 12432760 + 0.833333 NA intron (NM_138712, intron 7 of 7) L1M4|LINE|L1 -51777 NM_001321277 80746 Hs.335550 NM_025265 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L tRNA splicing endonuclease subunit 2 protein-coding 164.667-23 chr12 68364315 68364702 + 0.833333 NA Intergenic Intergenic -32094 NM_001354970 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 225.333-6 chr12 32192691 32192988 + 0.833333 NA intron (NR_148725, intron 1 of 9) Tigger1|DNA|TcMar-Tigger 85992 NR_148725 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 202.667-40 chr6 136081312 136081855 + 0.833333 NA intron (NM_018945, intron 2 of 12) intron (NM_018945, intron 2 of 12) -8756 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 117.667-69 chr2 187307735 187307940 + 0.833333 NA Intergenic Intergenic 140415 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 167.333-52 chr4 100946645 100946987 + 0.833333 NA Intergenic Intergenic -271703 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 188.833-18 chr16 71967822 71968233 + 0.833333 NA intron (NM_181536, intron 13 of 29) intron (NM_181536, intron 13 of 29) 31951 NM_181536 342372 Hs.675286 NM_181536 ENSG00000277481 PKD1L3 - polycystin 1 like 3, transient receptor potential channel interacting protein-coding 195.833-16 chr2 54170493 54170761 + 0.833333 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 47344 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 285.667-7 chr4 74373643 74374728 + 0.833333 NA intron (NM_001432, intron 1 of 4) intron (NM_001432, intron 1 of 4) 9040 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 122.667-2 chr1 39721537 39721979 + 0.833333 NA Intergenic Intergenic -17087 NM_001319293 10450 Hs.524690 NM_006112 ENSG00000084072 PPIE CYP-33|CYP33 peptidylprolyl isomerase E protein-coding 258.167-10 chr3 167022923 167023384 + 0.833333 NA Intergenic Intergenic 124470 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 357.833 chr2 75317257 75317860 + 0.833333 NA Intergenic LTR8|LTR|ERV1 -118038 NM_015727 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 197.5-38 chr3 130432589 130432900 + 0.833333 NA intron (NM_001278298, intron 33 of 40) intron (NM_001278298, intron 33 of 40) 87228 NM_153264 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 304.667-5 chr11 30540786 30541257 + 0.833333 NA intron (NM_001584, intron 1 of 5) intron (NM_001584, intron 1 of 5) 39472 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 247.333-20 chr4 62227289 62227768 + 0.833333 NA Intergenic Intergenic -65763 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 194.166 chr7 16783851 16784392 + 0.833333 NA 3' UTR (NM_014399, exon 6 of 6) 3' UTR (NM_014399, exon 6 of 6) 20878 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 276.333-18 chr6 409599 410023 + 0.833333 NA non-coding (NR_046000, exon 10 of 10) non-coding (NR_046000, exon 10 of 10) 18059 NR_046000 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 205.5-10 chr17 28463833 28464158 + 0.833333 NA Intergenic Intergenic -9649 NM_001145975 9058 Hs.102307 NM_003984 ENSG00000007216 SLC13A2 NADC1|NaCT|NaDC-1|SDCT1 solute carrier family 13 member 2 protein-coding 115.5-6 chr1 107645313 107645508 + 0.833333 NA intron (NM_006113, intron 19 of 26) intron (NM_006113, intron 19 of 26) 43089 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 195.833-9 chr14 88815309 88815672 + 0.833333 NA Intergenic Intergenic -8663 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 129.167-15 chr11 45893060 45893224 + 0.833333 NA intron (NM_005456, intron 1 of 11) intron (NM_005456, intron 1 of 11) 7491 NM_005456 9479 Hs.234249 NM_005456 ENSG00000121653 MAPK8IP1 IB1|JIP-1|JIP1|PRKM8IP mitogen-activated protein kinase 8 interacting protein 1 protein-coding 121.5-33 chr14 21568894 21569039 + 0.833333 NA TTS (NM_001005465) TTS (NM_001005465) 1778 NM_001005465 26533 Hs.554581 NM_001005465 ENSG00000169208 OR10G3 OR14-40 olfactory receptor family 10 subfamily G member 3 protein-coding 164.5-2 chr1 182608805 182609035 + 0.833333 NA Intergenic Intergenic -4531 NM_002928 6004 Hs.413297 NM_002928 ENSG00000143333 RGS16 A28-RGS14|A28-RGS14P|RGS-R regulator of G protein signaling 16 protein-coding 207.667-8 chr12 126619058 126619363 + 0.833333 NA Intergenic Arthur1B|DNA|hAT-Tip100 71108 NR_110035 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 207.333-14 chr12 57359178 57359547 + 0.833333 NA intron (NM_001351217, intron 1 of 21) L1ME1|LINE|L1 -16906 NM_001351214 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 119-31 chr14 48308648 48308908 + 0.833333 NA Intergenic HERVL-int|LTR|ERVL -513764 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 198.833-27 chr7 90177940 90178246 + 0.833333 NA intron (NR_110029, intron 2 of 2) L1MEh|LINE|L1 23624 NM_012449 26872 Hs.61635 NM_012449 ENSG00000164647 STEAP1 PRSS24|STEAP STEAP family member 1 protein-coding 115-38 chr2 116658075 116658238 + 0.833333 NA Intergenic L1M1|LINE|L1 -1156535 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 174.833-28 chr20 62762738 62763163 + 0.833333 NA TTS (NM_002531) TTS (NM_002531) 13906 NR_046224 100652730 Hs.254951 NR_046224 LINC00659 - long intergenic non-protein coding RNA 659 ncRNA 188.5-6 chr1 211751350 211751743 + 0.833333 NA intron (NM_014873, intron 6 of 7) intron (NM_014873, intron 6 of 7) 75784 NR_148994 91548 Hs.367839 NR_148994 LOC91548 - uncharacterized LOC91548 ncRNA 216.333-30 chr3 122117307 122117711 + 0.833333 NA intron (NM_001206925, intron 4 of 5) intron (NM_001206925, intron 4 of 5) 39660 NM_006889 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 171-31 chr21 17531179 17531444 + 0.833333 NA intron (NM_001207066, intron 1 of 7) AluSg|SINE|Alu 18268 NM_001207064 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR CXADR Ig-like cell adhesion molecule protein-coding 204-14 chr19 49804811 49805176 + 0.833333 NA intron (NM_130787, intron 18 of 22) AluJo|SINE|Alu 8299 NM_001363663 80199 Hs.288800 NM_025129 ENSG00000010361 FUZ CPLANE3|FY|NTD fuzzy planar cell polarity protein protein-coding 116.833-13 chr11 101197112 101197381 + 0.833333 NA Intergenic Intergenic -67433 NM_000926 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 158.333-8 chr10 23935137 23935677 + 0.833333 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 240680 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 130.667-24 chr14 28873336 28873498 + 0.833333 NA Intergenic Intergenic -87630 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 122.5-45 chr2 9964766 9965053 + 0.833333 NA intron (NM_198182, intron 7 of 15) intron (NM_198182, intron 7 of 15) 13216 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 123.333-49 chr2 2395455 2395645 + 0.833333 NA Intergenic Intergenic -64275 NM_001303052 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 132.833-31 chr2 63417897 63418195 + 0.833333 NA intron (NR_148704, intron 10 of 18) intron (NR_148704, intron 10 of 18) 19961 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 131.833-9 chr11 111657901 111658111 + 0.833333 NA intron (NM_015191, intron 3 of 14) intron (NM_015191, intron 3 of 14) 55557 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 118.833-7 chr10 82876113 82876336 + 0.833333 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -643304 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 144.5-84 chr7 28435128 28435421 + 0.833333 NA promoter-TSS (NM_004904) promoter-TSS (NM_004904) -341 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 204.667-8 chr10 90102191 90102489 + 0.833333 NA Intergenic L1M1|LINE|L1 -144967 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 273.167-13 chr3 43965095 43965573 + 0.833333 NA Intergenic Intergenic -148878 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 123.167-4 chr1 114813342 114813504 + 0.833333 NA Intergenic Intergenic -32738 NM_025073 80143 Hs.709277 NM_025073 ENSG00000052723 SIKE1 SIKE suppressor of IKBKE 1 protein-coding 173-12 chr10 109025028 109025401 + 0.833333 NA Intergenic L1MC4|LINE|L1 898032 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 204.333-35 chr3 97490086 97490373 + 0.833333 NA intron (NM_001080448, intron 10 of 17) intron (NM_001080448, intron 10 of 17) 50622 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 157.667-59 chr5 106514869 106515287 + 0.833333 NA Intergenic L2|LINE|L2 495936 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 120.667-114 chr8 83941040 83941584 + 0.833333 NA Intergenic L1MA9|LINE|L1 -241475 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 273.5-22 chr8 83415225 83415840 + 0.833333 NA Intergenic L1MC3|LINE|L1 11774 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 210.833-5 chr11 22771982 22772350 + 0.833333 NA intron (NR_147085, intron 10 of 10) intron (NR_147085, intron 10 of 10) 57213 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 199.667-2 chr1 95947560 95947889 + 0.833333 NA Intergenic Intergenic -44344 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 261.833-7 chr17 2143420 2143881 + 0.833333 NA intron (NM_001256827, intron 6 of 11) L1MB7|LINE|L1 -54889 NM_001282326 23293 Hs.448342 NM_017575 ENSG00000070366 SMG6 C17orf31|EST1A|SMG-6|hSMG5/7a SMG6 nonsense mediated mRNA decay factor protein-coding 165-11 chr11 25477880 25478170 + 0.833333 NA Intergenic Intergenic -711098 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 174.833-39 chr5 41723586 41723963 + 0.833333 NA Intergenic L3b|LINE|CR1 119883 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 153.833-41 chr21 31690010 31690214 + 0.833333 NA intron (NM_020706, intron 15 of 19) intron (NM_020706, intron 15 of 19) 30490 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 315.167-11 chr4 18393979 18394504 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR -372366 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 188.167-26 chr22 26889758 26890118 + 0.833333 NA Intergenic Intergenic -13354 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 143.167-13 chr11 110663160 110663571 + 0.833333 NA intron (NM_020809, intron 3 of 15) L1M5|LINE|L1 48460 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 160-22 chr12 62254825 62255371 + 0.833333 NA Intergenic Intergenic -5242 NM_001252079 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 190.333-17 chr14 63694219 63694560 + 0.833333 NA intron (NM_030791, intron 2 of 2).2 intron (NM_030791, intron 2 of 2).2 33676 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 161.5-52 chr8 110789525 110789899 + 0.833333 NA Intergenic LTR8B|LTR|ERV1 237721 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 202.833-21 chr5 59314291 59314676 + 0.833333 NA intron (NM_001165899, intron 3 of 16) MER50-int|LTR|ERV1 -38368 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 226.833-15 chr3 191322124 191322522 + 0.833333 NA intron (NM_198152, intron 2 of 8) A-rich|Low_complexity|Low_complexity -7071 NM_178335 152137 Hs.478682 NM_174908 ENSG00000152492 CCDC50 C3orf6|DFNA44|YMER coiled-coil domain containing 50 protein-coding 160.333-16 chr14 83897810 83898056 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR 1255301 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 142.833-11 chr12 79457467 79457977 + 0.833333 NA Intergenic SATR2|Satellite|Satellite 38465 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 165.333-67 chr7 104977217 104977707 + 0.833333 NA Intergenic Intergenic 13703 NR_039981 100216546 Hs.369356 NR_039981 LINC01004 - long intergenic non-protein coding RNA 1004 ncRNA 113.5-30 chr12 89059117 89059321 + 0.833333 NA Intergenic Intergenic -39527 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 246.833-4 chr17 60241469 60241924 + 0.833333 NA intron (NM_032582, intron 11 of 33) L1M4a2|LINE|L1 -10051 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 189.667-6 chr10 109431765 109432113 + 0.833333 NA Intergenic Intergenic 491307 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 151.167-12 chr12 949796 950145 + 0.833333 NA promoter-TSS (NR_123713) promoter-TSS (NR_123713) -248 NR_123713 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 144.167-70 chr8 41929699 41929935 + 0.833333 NA 3' UTR (NM_006766, exon 17 of 17) 3' UTR (NM_006766, exon 17 of 17) -33076 NM_001142446 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 171.5-29 chr2 57627239 57627623 + 0.833333 NA Intergenic Intergenic -280220 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 184.167-15 chr11 35637745 35638208 + 0.833333 NA Intergenic Intergenic 19516 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 189.833-20 chr2 124224564 124224852 + 0.833333 NA intron (NM_130773, intron 2 of 23) L1MC5a|LINE|L1 199421 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 139-6 chr12 4475110 4475459 + 0.833333 NA Intergenic L1MA8|LINE|L1 -29670 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 185-27 chr2 180613642 180614246 + 0.833333 NA Intergenic L3|LINE|CR1 -78160 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 144-20 chr15 67633196 67633414 + 0.833333 NA intron (NM_001206804, intron 9 of 21) intron (NM_001206804, intron 9 of 21) 84211 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 400.667 chr8 110508635 110509421 + 0.833333 NA Intergenic Intergenic 518405 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 149-52 chr3 3148033 3148453 + 0.833333 NA non-coding (NR_159938, exon 7 of 7) non-coding (NR_159938, exon 7 of 7) 21303 NM_001367322 51095 Hs.732725 NM_016000 ENSG00000072756 TRNT1 CCA1|CGI-47|MtCCA|RPEM|SIFD tRNA nucleotidyl transferase 1 protein-coding 249.667-15 chr17 54062097 54062634 + 0.833333 NA Intergenic Intergenic 239438 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 113.167-35 chr2 24039664 24039907 + 0.833333 NA intron (NM_025203, intron 1 of 3) L1MC5a|LINE|L1 7606 NM_025203 80304 Hs.24624 NM_025203 ENSG00000163026 WDCP C2orf44|MMAP|PP384 WD repeat and coiled coil containing protein-coding 225.833 chr1 93411380 93411833 + 0.833333 NA Intergenic LTR23-int|LTR|ERV1 -36512 NM_017737 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 130.167-3 chr1 179945005 179945192 + 0.833333 NA Intergenic Intergenic -9712 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 188.333-60 chr8 84240858 84241205 + 0.833333 NA intron (NM_001354320, intron 2 of 9) HAL1|LINE|L1 56365 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 254.667-30 chr7 90709304 90709744 + 0.833333 NA promoter-TSS (NM_001287137) promoter-TSS (NM_001287137) 126 NM_012395 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 242 chr1 61487819 61488170 + 0.833333 NA Intergenic Intergenic -166248 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 138.833-66 chr5 39706541 39706810 + 0.833333 NA Intergenic Intergenic 186244 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 147-91 chr9 104743858 104744253 + 0.833333 NA Intergenic Intergenic -3628 NM_001329570 25934 Hs.530275 NM_015469 ENSG00000136783 NIPSNAP3A HSPC299|NIPSNAP4|TASSC nipsnap homolog 3A protein-coding 228.5-29 chr5 105426708 105427078 + 0.833333 NA Intergenic Intergenic 327419 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 246.333-24 chr8 130160783 130161230 + 0.833333 NA intron (NM_001362925, intron 11 of 29) intron (NM_001362925, intron 11 of 29) -76238 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 247.833-7 chr3 183900545 183901025 + 0.833333 NA Intergenic AluJb|SINE|Alu 13985 NR_039650 100616127 NR_039650 ENSG00000263932 MIR4448 - microRNA 4448 ncRNA 140.5-43 chr22 24896689 24896933 + 0.833333 NA intron (NM_001098498, intron 17 of 23) AluSx|SINE|Alu 49884 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 260-22 chr8 86308529 86309053 + 0.833333 NA Intergenic LTR40a|LTR|ERVL -33756 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 147.333-7 chr10 67941177 67941565 + 0.833333 NA intron (NM_022079, intron 20 of 25) intron (NM_022079, intron 20 of 25) 49969 NM_001314049 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 139.333-94 chr9 77356972 77357248 + 0.833333 NA intron (NM_001018038, intron 55 of 68) AluSz6|SINE|Alu -90539 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 117.333-53 chr2 231088209 231088500 + 0.833333 NA intron (NM_001191037, intron 16 of 23) Tigger1|DNA|TcMar-Tigger 31487 NM_002807 5707 Hs.3887 NM_002807 ENSG00000173692 PSMD1 P112|Rpn2|S1 proteasome 26S subunit, non-ATPase 1 protein-coding 317.333-2 chr1 89813655 89814123 + 0.833333 NA Intergenic AluSp|SINE|Alu -7143 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 158.333-22 chr12 125576465 125576790 + 0.833333 NA intron (NM_052907, intron 4 of 8) L1MB8|LINE|L1 -45825 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 131.333-65 chr22 28500518 28500857 + 0.833333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 40818 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 162.333-79 chrX 29250597 29251030 + 0.833333 NA intron (NM_014271, intron 2 of 10) intron (NM_014271, intron 2 of 10) -323465 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 139.333-3 chr1 93340249 93340752 + 0.833333 NA non-coding (NR_034089, exon 2 of 9) non-coding (NR_034089, exon 2 of 9) 5311 NR_034089 100131564 Hs.732666 NR_034089 CCDC18-AS1 - CCDC18 antisense RNA 1 ncRNA 225.5-36 chr3 86443589 86444040 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL -38129 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 300.834-3 chr7 26929653 26930245 + 0.833333 NA Intergenic Intergenic -65359 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 203.667-24 chr3 31099952 31100353 + 0.833333 NA Intergenic MIRc|SINE|MIR 61635 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 201.833-9 chr17 59514199 59514509 + 0.833333 NA intron (NR_110813, intron 1 of 2) intron (NR_110813, intron 1 of 2) 12503 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 189.5-56 chr7 68587687 68588014 + 0.833333 NA Intergenic Intergenic 567597 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 146.167-76 chr8 131215035 131215539 + 0.833333 NA Intergenic Intergenic -174378 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 307.833-9 chr3 194752387 194753135 + 0.833333 NA intron (NR_037891, intron 3 of 3) Tigger3b|DNA|TcMar-Tigger 15948 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 220.667 chr10 68943894 68944420 + 0.833333 NA intron (NM_024045, intron 14 of 14) L1MC5|LINE|L1 -12013 NM_004728 9188 Hs.223141 NM_004728 ENSG00000165732 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DExD-box helicase 21 protein-coding 217.167-10 chr17 72479911 72480359 + 0.833333 NA intron (NR_036488, intron 1 of 3) MLT1C|LTR|ERVL-MaLR 112669 NR_137280 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 148.5-14 chr11 115772860 115773241 + 0.833333 NA Intergenic Intergenic -12850 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 121.167-32 chr17 53958593 53958890 + 0.833333 NA Intergenic L1MA4A|LINE|L1 135814 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 145.667-74 chr4 66789716 66790017 + 0.833333 NA Intergenic MIRc|SINE|MIR 513042 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 190.5-33 chr2 137822466 137822942 + 0.833333 NA Intergenic HERVH-int|LTR|ERV1 105228 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 176.5-47 chr3 156183871 156184271 + 0.833333 NA intron (NM_003471, intron 1 of 13) MIR|SINE|MIR 41109 NM_003471 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 182-21 chr16 61297173 61297475 + 0.833333 NA Intergenic LTR29|LTR|ERV1 -241558 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 227.833-19 chr5 36174188 36174567 + 0.833333 NA intron (NM_032637, intron 7 of 9) intron (NM_032637, intron 7 of 9) 22266 NM_032637 6502 Hs.23348 NM_005983 ENSG00000145604 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase associated protein 2 protein-coding 182.333-71 chr8 58329110 58329457 + 0.833333 NA Intergenic L1ME3|LINE|L1 -57182 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 117.833-2 chr1 152141254 152141425 + 0.833333 NA Intergenic Intergenic 17889 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 173.167-24 chr22 42633278 42633618 + 0.833333 NA intron (NM_007326, intron 2 of 8) intron (NM_007326, intron 2 of 8) 7153 NM_001165877 267020 Hs.664737 NM_001165877 ENSG00000249222 ATP5MGL ATP5K2|ATP5L2 ATP synthase membrane subunit g like protein-coding 166.667-18 chr17 52900315 52900622 + 0.833333 NA TTS (NR_146899) TTS (NR_146899) 38347 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 145.333-61 chr5 76554111 76554411 + 0.833333 NA intron (NM_001285460, intron 1 of 34) L1MB8|LINE|L1 6852 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 142.833-12 chr12 101752548 101752786 + 0.833333 NA intron (NM_024312, intron 19 of 20) intron (NM_024312, intron 19 of 20) -13195 NM_001177948 50511 Hs.506504 NM_153694 ENSG00000139351 SYCP3 COR1|RPRGL4|SCP3|SPGF4 synaptonemal complex protein 3 protein-coding 132.833-44 chr21 28477615 28477903 + 0.833333 NA Intergenic MER66C|LTR|ERV1 -61559 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 260.334-2 chr11 91887706 91888471 + 0.833333 NA Intergenic Intergenic -336946 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 118.333-83 chr4 60508019 60508199 + 0.833333 NA Intergenic AluY|SINE|Alu -414510 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 119.833-12 chr1 231759081 231759379 + 0.833333 NA intron (NM_001164540, intron 4 of 10) intron (NM_001164540, intron 4 of 10) 59287 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 126-71 chr5 9939966 9940310 + 0.833333 NA Intergenic L2a|LINE|L2 -36314 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 200.667-53 chr8 128207874 128208276 + 0.833333 NA Intergenic MER58B|DNA|hAT-Charlie 57959 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 254.667-18 chr2 159396254 159396595 + 0.833333 NA intron (NM_001289975, intron 18 of 35) intron (NM_001289975, intron 18 of 35) -109721 NM_001128212 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 161.833-39 chr6 56434403 56434671 + 0.833333 NA Intergenic L1MEg|LINE|L1 -40409 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 140.333-19 chr13 48937646 48937890 + 0.833333 NA Intergenic Intergenic -38144 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 293.167-9 chr5 73454366 73454924 + 0.833333 NA intron (NR_126410, intron 4 of 4) intron (NR_126410, intron 4 of 4) -5868 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 326.333-7 chr7 39044114 39044795 + 0.833333 NA intron (NM_007252, intron 2 of 10) intron (NM_007252, intron 2 of 10) -30887 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 251.667-25 chr9 133995820 133996324 + 0.833333 NA Intergenic AluJb|SINE|Alu -3748 NM_001134398 7410 Hs.369921 NM_003371 ENSG00000160293 VAV2 VAV-2 vav guanine nucleotide exchange factor 2 protein-coding 265-14 chr2 110727723 110728191 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -4616 NM_001142807 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase like protein-coding 147.167-37 chr2 236851690 236851952 + 0.833333 NA Intergenic Intergenic 204346 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 150-18 chr13 96930033 96930278 + 0.833333 NA Intergenic Zaphod|DNA|hAT-Tip100 54017 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 123.5-27 chr14 60929722 60929919 + 0.833333 NA intron (NM_001177963, intron 6 of 6) intron (NM_001177963, intron 6 of 6) 51259 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 168.667-11 chr12 63966261 63966532 + 0.833333 NA intron (NM_001346201, intron 1 of 21) intron (NM_001346201, intron 1 of 21) 121696 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 286.667-4 chr16 68846415 68847055 + 0.833333 NA intron (NM_024562, intron 1 of 17) AluSx3|SINE|Alu 3204 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 271.5-16 chr3 22146210 22146632 + 0.833333 NA Intergenic Intergenic 189282 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 116.5-13 chr11 115374612 115374998 + 0.833333 NA intron (NM_001098517, intron 1 of 8) L1MC5|LINE|L1 -21951 NR_135103 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 133.667-100 chr8 138491281 138491481 + 0.833333 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 5880 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 140-3 chr1 78470006 78470239 + 0.833333 NA Intergenic Intergenic -20852 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 115.667-56 chr2 154789062 154789352 + 0.833333 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 90512 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 117-96 chr6 38638206 38638358 + 0.833333 NA intron (NM_052893, intron 1 of 11) intron (NM_052893, intron 1 of 11) 1647 NM_001099272 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 127.833-27 chr15 95574391 95574649 + 0.833333 NA Intergenic Intergenic 141427 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 212.333-29 chr5 33142559 33143053 + 0.833333 NA Intergenic L1M4b|LINE|L1 -86929 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 129.667-2 chr1 51148521 51148813 + 0.833333 NA TTS (NM_001136508) TTS (NM_001136508) 46439 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 205.667-6 chr11 12836781 12837217 + 0.833333 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 152549 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 188.167-42 chr5 158856756 158857032 + 0.833333 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 241062 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 152.667-90 chr9 99434582 99434819 + 0.833333 NA Intergenic Intergenic -59443 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 149.333-94 chr8 80925883 80926150 + 0.833333 NA Intergenic Intergenic -51235 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 183.333-36 chr3 107949907 107950186 + 0.833333 NA Intergenic Intergenic 66841 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 203.333-43 chr5 121899837 121900324 + 0.833333 NA Intergenic Intergenic 48198 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 195-26 chr3 2120068 2120352 + 0.833333 NA intron (NR_046555, intron 2 of 2) intron (NR_046555, intron 2 of 2) 21344 NM_175607 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 153.333-61 chr4 43040322 43040620 + 0.833333 NA Intergenic MIR|SINE|MIR 147205 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 184-5 chr1 208196996 208197331 + 0.833333 NA intron (NM_025179, intron 3 of 31) intron (NM_025179, intron 3 of 31) 47221 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 293.667-5 chr2 129082257 129082719 + 0.833333 NA Intergenic L1MEc|LINE|L1 191403 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 118.5-42 chr17 64128452 64128622 + 0.833333 NA intron (NM_001433, intron 1 of 21) intron (NM_001433, intron 1 of 21) 1607 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 176.167-18 chr19 38057601 38057998 + 0.833333 NA intron (NM_015073, intron 2 of 21) AluYm1|SINE|Alu -105297 NR_145800 109623473 NR_145800 SNORD152 - small nucleolar RNA, C/D box 152 snoRNA 160.333-65 chr9 29772508 29772809 + 0.833333 NA Intergenic MER58A|DNA|hAT-Charlie -559057 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 223.5-28 chr6 156808654 156809045 + 0.833333 NA intron (NM_020732, intron 1 of 19) intron (NM_020732, intron 1 of 19) -29118 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 133.333-117 chr7 146034172 146034599 + 0.833333 NA Intergenic Intergenic -739886 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 179-38 chr4 92501525 92501848 + 0.833333 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 197287 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 128.333-94 chr5 25187674 25187973 + 0.833333 NA intron (NR_147006, intron 1 of 4) intron (NR_147006, intron 1 of 4) 2833 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 123.667-19 chr11 95079326 95079499 + 0.833333 NA Intergenic Intergenic -10434 NM_015036 23052 Hs.167115 NM_015036 ENSG00000149218 ENDOD1 - endonuclease domain containing 1 protein-coding 227.833-23 chr8 115120983 115121477 + 0.833333 NA Intergenic Intergenic 546783 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 286-2 chr1 172677346 172677742 + 0.833333 NA Intergenic MER20B|DNA|hAT-Charlie 18441 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 142-84 chr7 34067124 34067421 + 0.833333 NA intron (NM_133468, intron 12 of 15) intron (NM_133468, intron 12 of 15) 161733 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 139.833-79 chr8 137538725 137538988 + 0.833333 NA Intergenic Intergenic -125268 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 117.5-40 chr3 89776496 89776788 + 0.833333 NA Intergenic L1PA15|LINE|L1 669021 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 122-28 chr17 44263336 44263519 + 0.833333 NA intron (NM_000342, intron 1 of 19) L2a|LINE|L2 4708 NM_000342 6521 Hs.210751 NM_000342 ENSG00000004939 SLC4A1 AE1|BND3|CD233|CHC|DI|EMPB3|EPB3|FR|RTA1A|SAO|SPH4|SW|WD|WD1|WR solute carrier family 4 member 1 (Diego blood group) protein-coding 185.667-20 chr15 45393461 45393873 + 0.833333 NA intron (NM_001321015, intron 3 of 11) Tigger4a|DNA|TcMar-Tigger 8560 NM_001321015 2628 Hs.75335 NM_001482 ENSG00000171766 GATM AGAT|AT|CCDS3 glycine amidinotransferase protein-coding 207-30 chr22 24772314 24772926 + 0.833333 NA intron (NR_045648, intron 1 of 21) intron (NR_045648, intron 1 of 21) 2100 NR_045649 440822 Hs.448343 NM_001008496 ENSG00000184571 PIWIL3 HIWI3 piwi like RNA-mediated gene silencing 3 protein-coding 173-53 chr7 106312743 106313095 + 0.833333 NA Intergenic Intergenic -27936 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 219.167-25 chr8 127923093 127923556 + 0.833333 NA intron (NR_003367, intron 2 of 8) MIRb|SINE|MIR 25399 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 204-29 chr4 64234435 64234858 + 0.833333 NA Intergenic Intergenic 174804 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 274.5-2 chr11 115863697 115864134 + 0.833333 NA Intergenic L1MA4A|LINE|L1 -103715 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 161.667-50 chr3 35657879 35658129 + 0.833333 NA intron (NM_016300, intron 1 of 19) intron (NM_016300, intron 1 of 19) 15647 NM_016300 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 141.167-45 chr2 205176270 205176528 + 0.833333 NA intron (NM_205863, intron 12 of 21) intron (NM_205863, intron 12 of 21) -506101 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 117.5-41 chr3 97080670 97080901 + 0.833333 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 266191 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 146.833-11 chr12 20638276 20638791 + 0.833333 NA intron (NM_000921, intron 9 of 15) intron (NM_000921, intron 9 of 15) -56822 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 168.833-36 chr3 176857884 176858088 + 0.833333 NA Intergenic LTR80A|LTR|ERVL -40985 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 185.167-32 chr4 70996482 70996897 + 0.833333 NA intron (NM_000788, intron 1 of 6) intron (NM_000788, intron 1 of 6) 3040 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 167.833-19 chr15 71891512 71891848 + 0.833333 NA intron (NM_006901, intron 26 of 41) intron (NM_006901, intron 26 of 41) 81126 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 139.833-58 chr4 67194690 67195044 + 0.833333 NA Intergenic Intergenic 227133 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 130-74 chr4 42050546 42050717 + 0.833333 NA intron (NM_006345, intron 9 of 17) L1ME3G|LINE|L1 60101 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 175-9 chr10 22033326 22033618 + 0.833333 NA Intergenic Intergenic -29742 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 188.333-14 chr12 48355008 48355267 + 0.833333 NA Intergenic Intergenic -3891 NM_001172682 121274 Hs.23492 NM_152320 ENSG00000167528 ZNF641 - zinc finger protein 641 protein-coding 134.333-92 chr5 117957662 117957948 + 0.833333 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) 227444 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 162-57 chr5 84898157 84898680 + 0.833333 NA Intergenic L1M5|LINE|L1 -513538 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 201.667-3 chr1 108974436 108974709 + 0.833333 NA exon (NM_001142550, exon 14 of 15) exon (NM_001142550, exon 14 of 15) -11073 NM_001048210 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 168.167-43 chr4 163845018 163845219 + 0.833333 NA intron (NM_001166373, intron 3 of 7) intron (NM_001166373, intron 3 of 7) -231584 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 271.333-10 chr2 54749156 54749632 + 0.833333 NA intron (NM_001039753, intron 1 of 40) intron (NM_001039753, intron 1 of 40) 24382 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 118-39 chr14 71669799 71670060 + 0.833333 NA intron (NM_001354286, intron 11 of 24) intron (NM_001354286, intron 11 of 24) 83631 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 129.5-12 chr10 75669941 75670201 + 0.833333 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) 22562 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 164.167-69 chrX 140658032 140658314 + 0.833333 NA Intergenic Intergenic -51586 NR_028345 286411 Hs.317627 NR_028344 ENSG00000203930 LINC00632 ASINC long intergenic non-protein coding RNA 632 ncRNA 155.333-80 chr5 43311994 43312408 + 0.833333 NA intron (NM_001324220, intron 1 of 10) intron (NM_001324220, intron 1 of 10) 980 NM_001364188 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 187.667-55 chr8 73879916 73880273 + 0.833333 NA non-coding (NR_147034, exon 1 of 3) non-coding (NR_147034, exon 1 of 3) 1112 NR_147034 101926947 Hs.521636 NR_147034 LINC01617 C8orf23|NCRNA00249|XLOC_006844 long intergenic non-protein coding RNA 1617 ncRNA 136.833-62 chr6 40666236 40666409 + 0.833333 NA Intergenic Intergenic -78958 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 212.667-49 chr8 133576455 133577003 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR -4842 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 128.167-47 chr3 10127632 10127891 + 0.833333 NA TTS (NM_018462) TTS (NM_018462) 12086 NM_018462 55845 Hs.649307 NM_018462 ENSG00000254999 BRK1 C3orf10|HSPC300|MDS027|hHBrk1 BRICK1 subunit of SCAR/WAVE actin nucleating complex protein-coding 205.667-31 chr2 66002953 66003294 + 0.833333 NA Intergenic MIRb|SINE|MIR 355205 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 244.667-26 chr7 41442047 41442501 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie -251645 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 175.667-76 chr9 112683781 112684104 + 0.833333 NA TTS (NM_021218) TTS (NM_021218) 34175 NM_001329587 58493 Hs.658575 NM_021218 ENSG00000148153 INIP C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 INTS3 and NABP interacting protein protein-coding 150.333-64 chr3 3299213 3299452 + 0.833333 NA Intergenic LTR86B2|LTR|ERVL -119615 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 153.5-18 chr12 43495319 43495676 + 0.833333 NA intron (NM_025003, intron 4 of 38) intron (NM_025003, intron 4 of 38) 56706 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 128.833-72 chr5 98745777 98746086 + 0.833333 NA Intergenic L1PA10|LINE|L1 -22701 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 175.833-43 chr8 65410792 65411236 + 0.833333 NA Intergenic Intergenic 151652 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 424.667 chr1 43023077 43024281 + 0.833333 NA Intergenic L2b|LINE|L2 64630 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 174.667-39 chr3 12493354 12493569 + 0.833333 NA intron (NM_025265, intron 3 of 11) AluSg|SINE|Alu 8932 NM_001321279 80746 Hs.335550 NM_025265 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L tRNA splicing endonuclease subunit 2 protein-coding 130.667-80 chr5 167552725 167553033 + 0.833333 NA intron (NM_001122679, intron 3 of 29) L2c|LINE|L2 -20780 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 117.167-70 chr4 39835710 39836051 + 0.833333 NA intron (NM_001100399, intron 32 of 32) intron (NM_001100399, intron 32 of 32) 137744 NM_005339 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 202.167-24 chr22 47854271 47854704 + 0.833333 NA intron (NR_122046, intron 8 of 8) L2a|LINE|L2 222813 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 221.333-26 chr7 43403830 43404268 + 0.833333 NA intron (NM_001287059, intron 6 of 27) MIR3|SINE|MIR 118493 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 198.5-20 chr2 34341780 34342115 + 0.833333 NA Intergenic L1MB5|LINE|L1 274721 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 171.333-56 chr5 25144597 25144840 + 0.833333 NA intron (NR_147006, intron 3 of 4) L1PA13|LINE|L1 45938 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 286.667-17 chr8 138256985 138257355 + 0.833333 NA intron (NM_015912, intron 4 of 19) intron (NM_015912, intron 4 of 19) -173625 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 204.5-34 chr6 22011291 22011692 + 0.833333 NA intron (NR_015410, intron 6 of 11) intron (NR_015410, intron 6 of 11) 135702 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 236.333-15 chr2 116339545 116339935 + 0.833333 NA Intergenic Intergenic 995925 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 126.5-32 chr15 89872988 89873232 + 0.833333 NA intron (NM_001199058, intron 7 of 9) HAL1|LINE|L1 10920 NR_049807 100846993 NR_049807 ENSG00000264796 MIR5009 - microRNA 5009 ncRNA 192.5-33 chr3 103059374 103059783 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR 464538 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 267.833-12 chr6 53832486 53832882 + 0.833333 NA intron (NM_018214, intron 1 of 13) intron (NM_018214, intron 1 of 13) 37679 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 177.167-43 chr6 77617006 77617370 + 0.833333 NA Intergenic L1M3c|LINE|L1 -33086 NM_001282136 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 173.5 chr1 98223376 98223833 + 0.833333 NA intron (NR_046088, intron 1 of 2) L2a|LINE|L2 12893 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 135.167-83 chr7 13787138 13787620 + 0.833333 NA Intergenic Intergenic 199135 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 228.667-35 chr8 42985370 42985835 + 0.833333 NA intron (NM_032410, intron 14 of 21) intron (NM_032410, intron 14 of 21) -70697 NR_033698 2339 Hs.370312 NM_002027 ENSG00000168522 FNTA FPTA|PGGT1A|PTAR2 farnesyltransferase, CAAX box, alpha protein-coding 253.167-13 chr6 170201413 170201777 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 40953 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 281.333-6 chr18 67138475 67138944 + 0.833333 NA Intergenic Intergenic 57125 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 163.5-81 chrX 118152102 118152385 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -34903 NM_001168301 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 178.167-26 chr2 161532282 161532682 + 0.833333 NA Intergenic Intergenic -24580 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 149.667-30 chr17 55809870 55810216 + 0.833333 NA intron (NM_001330378, intron 5 of 5) AluJr|SINE|Alu 58938 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 198.667-46 chr5 38848108 38848515 + 0.833333 NA intron (NM_003999, intron 1 of 17) intron (NM_003999, intron 1 of 17) 2299 NM_003999 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 136.167-2 chr1 58428498 58428705 + 0.833333 NA Intergenic L1MC5|LINE|L1 118125 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 143.167-17 chr14 30499716 30500002 + 0.833333 NA intron (NR_151720, intron 3 of 3) intron (NR_151720, intron 3 of 3) -59264 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 130.667-77 chr5 88438121 88438340 + 0.833333 NA intron (NR_105021, intron 1 of 5) intron (NR_105021, intron 1 of 5) 860 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 247-3 chr10 57742650 57743029 + 0.833333 NA Intergenic L2|LINE|L2 -438280 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 234-6 chr1 242842694 242843178 + 0.833333 NA Intergenic Intergenic 258808 NR_029401 731275 Hs.722350 NR_029401 ENSG00000214837 LINC01347 - long intergenic non-protein coding RNA 1347 ncRNA 153.833-42 chr3 12348226 12348444 + 0.833333 NA intron (NM_001330615, intron 1 of 5) intron (NM_001330615, intron 1 of 5) -3082 NM_001354668 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 262.167-19 chr5 37660039 37660591 + 0.833333 NA intron (NM_001345998, intron 10 of 17) L1M5|LINE|L1 174507 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 134.167-33 chr18 52052442 52052693 + 0.833333 NA Intergenic Intergenic -287630 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 390-7 chr5 163499556 163500481 + 0.833333 NA Intergenic L1ME2|LINE|L1 -3046 NM_182796 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 236.5-27 chr6 57171224 57171652 + 0.833333 NA promoter-TSS (NM_004282) promoter-TSS (NM_004282) 775 NR_110742 101927211 Hs.705718 NR_110742 ZNF451-AS1 - ZNF451 regulatory antisense RNA 1 ncRNA 232.667-33 chr9 80907378 80907714 + 0.833333 NA Intergenic MER44A|DNA|TcMar-Tigger 781989 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 377-6 chr7 49836412 49837445 + 0.833333 NA intron (NR_136188, intron 2 of 3) intron (NR_136188, intron 2 of 3) 61595 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 157.5-56 chr5 123712643 123712859 + 0.833333 NA Intergenic L1M4|LINE|L1 167334 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 158.333-37 chr18 65420299 65420568 + 0.833333 NA Intergenic L1MA9|LINE|L1 -329819 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 205.5-3 chr11 99422555 99423035 + 0.833333 NA intron (NM_001243271, intron 2 of 20) L2a|LINE|L2 -133350 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 123-49 chr2 177073369 177073638 + 0.833333 NA Intergenic L3b|LINE|CR1 138908 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 166-70 chr8 106581310 106581534 + 0.833333 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) -76386 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 146-67 chr8 16323994 16324262 + 0.833333 NA Intergenic Charlie5|DNA|hAT-Charlie -131337 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 255.833-16 chr5 167999530 167999972 + 0.833333 NA intron (NM_001080428, intron 3 of 24) intron (NM_001080428, intron 3 of 24) -166094 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 305.333-2 chr1 247542613 247543168 + 0.833333 NA intron (NM_001281834, intron 3 of 6) intron (NM_001281834, intron 3 of 6) -6244 NM_145278 148823 Hs.732113 NM_145278 ENSG00000169224 GCSAML C1orf150 germinal center associated signaling and motility like protein-coding 150-38 chr2 99670852 99671049 + 0.833333 NA intron (NM_001025108, intron 11 of 23) intron (NM_001025108, intron 11 of 23) -180933 NM_001321454 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 221.833-10 chr19 31522440 31522835 + 0.833333 NA Intergenic L1ME1|LINE|L1 -65552 NM_001278577 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 140.833-42 chr3 82714590 82714805 + 0.833333 NA Intergenic Intergenic 728555 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 144.667-24 chr11 113153892 113154213 + 0.833333 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) 119849 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 169.833-10 chr11 78468625 78468952 + 0.833333 NA intron (NM_024678, intron 10 of 13) intron (NM_024678, intron 10 of 13) -38952 NR_120564 101928865 Hs.407574 NR_120564 ENSG00000251323 LINC02728 - long intergenic non-protein coding RNA 2728 ncRNA 130.667-53 chr3 124702370 124702639 + 0.833333 NA intron (NM_007064, intron 24 of 26) L1M5|LINE|L1 -27862 NR_033434 7372 Hs.2057 NM_000373 ENSG00000114491 UMPS OPRT uridine monophosphate synthetase protein-coding 155.333-55 chr20 15668573 15668970 + 0.833333 NA intron (NM_001351663, intron 8 of 17) L1MC4|LINE|L1 254543 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 209.333-29 chr3 60149484 60149911 + 0.833333 NA intron (NM_001320900, intron 6 of 9) MLT1K|LTR|ERVL-MaLR -68788 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 137.167-54 chr5 154528539 154528822 + 0.833333 NA Intergenic L1M5|LINE|L1 -50453 NM_004821 9421 Hs.152531 NM_004821 ENSG00000113196 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 228.667-4 chr1 113149440 113149761 + 0.833333 NA Intergenic Intergenic 56653 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 134.667-102 chr7 95787782 95787969 + 0.833333 NA intron (NM_004411, intron 1 of 16) L2a|LINE|L2 15369 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 151-36 chr2 99034572 99035148 + 0.833333 NA intron (NM_001349013, intron 13 of 16) intron (NM_001349013, intron 13 of 16) -98635 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 292.833-10 chr8 131032481 131032906 + 0.833333 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 8216 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 204.833-14 chr2 107637715 107638177 + 0.833333 NA Intergenic ERVL-B4-int|LTR|ERVL 108527 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 136.167-46 chr21 20294019 20294324 + 0.833333 NA Intergenic Intergenic -35486 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 148.5-62 chr6 44656385 44656711 + 0.833333 NA Intergenic Intergenic -104667 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 251-20 chr5 143150742 143151187 + 0.833333 NA intron (NM_001349547, intron 20 of 21) L1MC2|LINE|L1 -41536 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 144.667-27 chr12 25599173 25599385 + 0.833333 NA intron (NM_001352232, intron 1 of 10) L1MA2|LINE|L1 -45996 NM_001145728 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 124-49 chr2 26842917 26843167 + 0.833333 NA Intergenic Intergenic -5090 NM_020134 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 162-76 chr9 71053317 71053652 + 0.833333 NA intron (NM_001366143, intron 1 of 25) MIR1_Amn|SINE|MIR 68137 NM_001366153 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 190.167-23 chr18 29736108 29736431 + 0.833333 NA Intergenic L1PREC2|LINE|L1 -562641 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 148-88 chrX 71531956 71532199 + 0.833333 NA Intergenic Charlie13a|DNA|hAT-Charlie -1027 NM_181672 8473 Hs.405410 NM_003605 ENSG00000147162 OGT HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1 O-linked N-acetylglucosamine (GlcNAc) transferase protein-coding 145.833-45 chr2 225998150 225998412 + 0.833333 NA Intergenic Intergenic -144513 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 113.5-24 chr12 12686783 12687065 + 0.833333 NA intron (NM_006143, intron 2 of 3) intron (NM_006143, intron 2 of 3) 9259 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 186.667-9 chr11 16869131 16869529 + 0.833333 NA intron (NM_001329630, intron 4 of 26) intron (NM_001329630, intron 4 of 26) 56692 NR_145810 109623465 NR_145810 SNORD147 - small nucleolar RNA, C/D box 147 snoRNA 125.5-67 chr5 160060080 160060476 + 0.833333 NA intron (NM_003314, intron 7 of 7) intron (NM_003314, intron 7 of 7) 51139 NM_003314 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 277.167-8 chr6 86386912 86387602 + 0.833333 NA Intergenic Intergenic -550271 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 205.334-6 chr2 75239709 75240302 + 0.833333 NA Intergenic L1MEf|LINE|L1 -40485 NM_015727 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 218.833-2 chr1 115202142 115202570 + 0.833333 NA Intergenic L1PB3|LINE|L1 -80678 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 178.167-12 chr14 65454132 65454406 + 0.833333 NA intron (NR_038170, intron 1 of 10) intron (NR_038170, intron 1 of 10) -16833 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 114.333-117 chr8 51199549 51199846 + 0.833333 NA Intergenic L1MC3|LINE|L1 609748 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 152-3 chr1 49609147 49609414 + 0.833333 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -137195 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 120.667-34 chr13 35486790 35486971 + 0.833333 NA intron (NM_001204197, intron 1 of 17) intron (NM_001204197, intron 1 of 17) 10131 NM_001204197 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 140.333-94 chrX 54004530 54004727 + 0.833333 NA intron (NM_001184898, intron 8 of 21) L1MB7|LINE|L1 38519 NM_001184898 23133 Hs.133352 NM_015107 ENSG00000172943 PHF8 JHDM1F|KDM7B|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 303.167-5 chr2 22064990 22065478 + 0.833333 NA Intergenic L1MC|LINE|L1 -354582 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 157-46 chr2 241419206 241419549 + 0.833333 NA intron (NM_014808, intron 8 of 26) intron (NM_014808, intron 8 of 26) -58528 NR_036083 100422942 NR_036083 ENSG00000263752 MIR3133 - microRNA 3133 ncRNA 199.5-19 chr2 57325452 57325809 + 0.833333 NA Intergenic Intergenic -582021 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 288.333-4 chr18 37202552 37202959 + 0.833333 NA intron (NR_136303, intron 10 of 13) LTR49-int|LTR|ERV1 -71705 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 136.5-64 chr3 107728124 107728400 + 0.833333 NA intron (NM_001276286, intron 5 of 16) MIR|SINE|MIR 149806 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 130.5-74 chr8 107387271 107387493 + 0.833333 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -50867 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 171-41 chr4 81202768 81203029 + 0.833333 NA intron (NM_006259, intron 2 of 18) intron (NM_006259, intron 2 of 18) 12219 NM_006259 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 233.833-16 chr8 89015589 89015935 + 0.833333 NA Intergenic Intergenic -688279 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 203.167-23 chr2 40096925 40097259 + 0.833333 NA TTS (NM_001112802) TTS (NM_001112802) 179458 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 174.167-17 chr18 72396572 72396956 + 0.833333 NA Intergenic Intergenic 147578 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 209.5-2 chr10 132456990 132457401 + 0.833333 NA Intergenic Intergenic 12006 NR_149317 170393 Hs.375059 NR_149317 C10orf91 - chromosome 10 open reading frame 91 (putative) ncRNA 145-45 chr2 133920244 133920494 + 0.833333 NA Intergenic Intergenic -199566 NM_001371457 249.833-9 chr2 41161022 41161397 + 0.833333 NA Intergenic Intergenic -648774 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 124-31 chr14 32125090 32125603 + 0.833333 NA intron (NM_001030055, intron 3 of 6) L1MB5|LINE|L1 48042 NM_001173 394 Hs.592313 NM_001173 ENSG00000100852 ARHGAP5 GFI2|RhoGAP5|p190-B|p190BRhoGAP Rho GTPase activating protein 5 protein-coding 165.333-10 chr11 131081108 131081441 + 0.833333 NA Intergenic L1MEf|LINE|L1 -164787 NM_001347920 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 232.167-26 chr8 83318328 83318710 + 0.833333 NA Intergenic Intergenic -85239 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 113.5-41 chr16 65184928 65185068 + 0.833333 NA Intergenic MIRb|SINE|MIR -8425 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 123.5-45 chr2 58762282 58762745 + 0.833333 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 241760 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 130.5-16 chr13 22637459 22637684 + 0.833333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 260610 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 236.667-3 chr1 193698264 193698707 + 0.833333 NA Intergenic Intergenic 393740 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 137.333-56 chr20 34861205 34861514 + 0.833333 NA intron (NM_178026, intron 4 of 14) intron (NM_178026, intron 4 of 14) 11497 NM_178026 2686 Hs.433738 NM_178026 ENSG00000131067 GGT7 D20S101|GGT4|GGTL3|GGTL5 gamma-glutamyltransferase 7 protein-coding 235.333 chr1 23626692 23627071 + 0.833333 NA promoter-TSS (NM_001348075) promoter-TSS (NM_001348075) -453 NM_001348075 259283 Hs.523369 NM_001348075 MDS2 - myelodysplastic syndrome 2 translocation associated protein-coding 214.333-29 chr3 71469201 71469565 + 0.833333 NA intron (NR_146142, intron 3 of 19) intron (NR_146142, intron 3 of 19) 72706 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 176.5-27 chr17 68448010 68448356 + 0.833333 NA intron (NM_001320772, intron 2 of 11) intron (NM_001320772, intron 2 of 11) 9313 NM_017983 55062 Hs.463964 NM_017983 ENSG00000070540 WIPI1 ATG18|ATG18A|WIPI49 WD repeat domain, phosphoinositide interacting 1 protein-coding 168-65 chr5 158781570 158782105 + 0.833333 NA intron (NM_001324107, intron 9 of 15) L2|LINE|L2 316119 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 210.167-15 chr2 104937167 104937740 + 0.833333 NA intron (NR_110603, intron 2 of 2) intron (NR_110603, intron 2 of 2) -64858 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 145.833-56 chr4 27695058 27695308 + 0.833333 NA Intergenic Intergenic 477704 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 379.667-2 chr14 48555547 48556274 + 0.833333 NA Intergenic L1MB7|LINE|L1 -760896 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 118.833-51 chr3 21534596 21534791 + 0.833333 NA intron (NM_024697, intron 3 of 7) intron (NM_024697, intron 3 of 7) -8096 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 203.833-29 chr9 100385075 100385481 + 0.833333 NA Intergenic L1ME2|LINE|L1 -32336 NM_017746 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 262.833-3 chr11 24234551 24235144 + 0.833333 NA Intergenic L1P4a|LINE|L1 -262206 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 124.333-22 chr13 45749542 45750005 + 0.833333 NA Intergenic Intergenic 47304 NM_001286342 220082 Hs.186363 NM_152719 ENSG00000174015 SPERT CBY2|NURIT spermatid associated protein-coding 270.833-17 chr6 107924816 107925357 + 0.833333 NA intron (NM_007214, intron 2 of 20) L2b|LINE|L2 33122 NM_007214 11231 Hs.26904 NM_007214 ENSG00000025796 SEC63 DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L SEC63 homolog, protein translocation regulator protein-coding 233-23 chr8 20109112 20109524 + 0.833333 NA Intergenic Intergenic 73818 NM_001142324 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 126-28 chr13 92443436 92443674 + 0.833333 NA intron (NM_004466, intron 7 of 7) L2c|LINE|L2 -46608 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 144.667-73 chr4 115786323 115786832 + 0.833333 NA Intergenic L1MB3|LINE|L1 -513148 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 167.667-87 chr8 72668514 72668760 + 0.833333 NA intron (NM_004770, intron 2 of 2) L2a|LINE|L2 -63408 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 218.5-10 chr14 50726940 50727378 + 0.833333 NA TTS (NM_182944) TTS (NM_182944) -58853 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 159-41 chr2 83859953 83860257 + 0.833333 NA Intergenic Intergenic 337291 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 141.5-56 chr22 39763604 39763873 + 0.833333 NA intron (NM_152512, intron 6 of 6) intron (NM_152512, intron 6 of 6) 130022 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 171.667-51 chr3 30852596 30853160 + 0.833333 NA intron (NM_207359, intron 4 of 14) L2b|LINE|L2 41783 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 202.833-7 chr14 43637444 43637930 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie 869596 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 247-9 chr17 77919298 77919838 + 0.833333 NA Intergenic LTR7B|LTR|ERV1 -35481 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 152.833-52 chr4 165983779 165984119 + 0.833333 NA intron (NM_001204760, intron 1 of 9) intron (NM_001204760, intron 1 of 9) 110712 NM_001204760 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 228.5-5 chr10 92128026 92128504 + 0.833333 NA intron (NM_001178137, intron 6 of 9) MER30|DNA|hAT-Charlie 115014 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 122.833-22 chr14 37575370 37575654 + 0.833333 NA Intergenic Intergenic 19737 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 132.167-55 chr5 16815040 16815213 + 0.833333 NA intron (NM_012334, intron 3 of 40) FLAM_A|SINE|Alu 121162 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 181.667-53 chr5 164557672 164558155 + 0.833333 NA Intergenic Intergenic 87634 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 184.5-13 chr12 19914019 19914276 + 0.833333 NA Intergenic MER34C2|LTR|ERV1 -100538 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 286 chr1 75551958 75552394 + 0.833333 NA intron (NM_152697, intron 1 of 23) MIRc|SINE|MIR 58938 NM_152697 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 224-4 chr10 59397891 59398339 + 0.833333 NA Intergenic L1PA15|LINE|L1 -34934 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 188.167-13 chr18 5274296 5274561 + 0.833333 NA Intergenic L1MA2|LINE|L1 21298 NM_001243702 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 121.333-4 chr1 70726219 70726452 + 0.833333 NA intron (NR_125938, intron 5 of 6) L1PA11|LINE|L1 19882 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 192.833-18 chr2 54773187 54773444 + 0.833333 NA intron (NM_001039753, intron 1 of 40) intron (NM_001039753, intron 1 of 40) 48303 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 133.667-88 chr7 26947178 26947499 + 0.833333 NA Intergenic Intergenic -82748 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 169.833-31 chr7 6100123 6100668 + 0.833333 NA Intergenic AluSq2|SINE|Alu -4554 NM_032172 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 127.5-5 chr1 188159915 188160250 + 0.833333 NA Intergenic Intergenic 716454 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 245.334-8 chr9 7769602 7770206 + 0.833333 NA Intergenic MIRb|SINE|MIR 29874 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 156.167-57 chr7 78735829 78736084 + 0.833333 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -273032 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 168.333-24 chr17 60967270 60967637 + 0.833333 NA intron (NM_001330413, intron 14 of 25) L1MA4|LINE|L1 289602 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 183.333-30 chr2 143293330 143293684 + 0.833333 NA intron (NM_018460, intron 6 of 13) MER115|DNA|hAT-Tip100 164088 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 135.167-52 chr2 176287356 176287706 + 0.833333 NA intron (NM_001006635, intron 2 of 10) Tigger4a|DNA|TcMar-Tigger 18089 NM_001006635 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 114.5-44 chr18 74140902 74141046 + 0.833333 NA intron (NM_001142958, intron 1 of 9) intron (NM_001142958, intron 1 of 9) 6860 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 185.333-19 chr15 41919711 41919996 + 0.833333 NA intron (NM_139265, intron 3 of 5) intron (NM_139265, intron 3 of 5) -1564 NR_120332 101928363 Hs.680195 NR_120332 EHD4-AS1 - EHD4 antisense RNA 1 ncRNA 147-52 chr3 84356516 84356815 + 0.833333 NA Intergenic Intergenic 512910 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 164.667-2 chr1 81345682 81346091 + 0.833333 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 39491 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 146.667-4 chr1 107656688 107656891 + 0.833333 NA intron (NM_006113, intron 19 of 26) intron (NM_006113, intron 19 of 26) 31710 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 175.667-4 chr1 172602208 172602619 + 0.833333 NA intron (NM_014283, intron 21 of 23) intron (NM_014283, intron 21 of 23) -56595 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 154.833-43 chr3 181421919 181422413 + 0.833333 NA intron (NR_125407, intron 3 of 4) Charlie18a|DNA|hAT-Charlie 20320 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 172-58 chr5 170691995 170692458 + 0.833333 NA intron (NM_001278340, intron 2 of 8) intron (NM_001278340, intron 2 of 8) -10756 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 264.667-6 chr10 125398907 125399521 + 0.833333 NA Intergenic Intergenic -175157 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 115.833-6 chr10 54901702 54901945 + 0.833333 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -100532 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 141.667-117 chr9 82156536 82156891 + 0.833333 NA Intergenic MSTB|LTR|ERVL-MaLR 167941 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 131.667-56 chr2 50825671 50826000 + 0.833333 NA intron (NM_001330093, intron 4 of 22) MER21B|LTR|ERVL -129573 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 122.5-64 chr3 122324514 122324867 + 0.833333 NA promoter-TSS (NM_005213) promoter-TSS (NM_005213) -558 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 212.333-4 chr11 7295082 7295599 + 0.833333 NA intron (NM_175733, intron 1 of 6) MLT1A0-int|LTR|ERVL-MaLR 43436 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 260.333-5 chr14 63321306 63321791 + 0.833333 NA Intergenic Intergenic -2613 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 170-49 chr3 89921399 89921704 + 0.833333 NA Intergenic LOR1-int|LTR|ERV1 813930 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 119.167-83 chr6 34795670 34795911 + 0.833333 NA intron (NM_017754, intron 1 of 20) intron (NM_017754, intron 1 of 20) 3707 NM_017754 54887 Hs.700656 NM_017754 ENSG00000065060 UHRF1BP1 C6orf107|ICBP90|dJ349A12.1 UHRF1 binding protein 1 protein-coding 271.167-20 chr8 117733369 117733751 + 0.833333 NA Intergenic Intergenic 187353 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 114.833-14 chr12 38848511 38848712 + 0.833333 NA exon (NM_153634, exon 4 of 20) exon (NM_153634, exon 4 of 20) 56980 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 133.833-76 chr8 64740381 64740598 + 0.833333 NA intron (NM_004820, intron 1 of 5) L1MCb|LINE|L1 58248 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 134.667-32 chr14 89438006 89438242 + 0.833333 NA intron (NM_001085471, intron 1 of 6) intron (NM_001085471, intron 1 of 6) 20770 NR_036500 400236 Hs.585207 NR_036500 ENSG00000258920 FOXN3-AS1 - FOXN3 antisense RNA 1 ncRNA 174.333-78 chr9 89367483 89367785 + 0.833333 NA intron (NR_163886, intron 13 of 15) intron (NR_163886, intron 13 of 15) 48783 NM_001282690 79048 Hs.59804 NM_024077 ENSG00000187742 SECISBP2 SBP2 SECIS binding protein 2 protein-coding 143.5-26 chr14 74137637 74137855 + 0.833333 NA intron (NM_001024674, intron 5 of 5) AluSg|SINE|Alu 52793 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 182.833-12 chr12 20629447 20630053 + 0.833333 NA intron (NM_000921, intron 5 of 15) intron (NM_000921, intron 5 of 15) 57886 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 377.667-3 chr5 15195779 15196795 + 0.833333 NA intron (NR_109944, intron 2 of 2) MLT1J|LTR|ERVL-MaLR 70273 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 153.833-68 chr9 83730157 83730434 + 0.833333 NA Intergenic L1PA15|LINE|L1 21964 NR_135840 105376114 Hs.9589 NR_135839 ENSG00000254473 LOC105376114 - uncharacterized LOC105376114 ncRNA 231.167-26 chr6 9374824 9375225 + 0.833333 NA Intergenic Intergenic 722815 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 132.167-65 chr7 136937704 136937910 + 0.833333 NA intron (NR_046103, intron 2 of 3) intron (NR_046103, intron 2 of 3) 34640 NR_030165 574443 NR_030165 ENSG00000207597 MIR490 MIRN490|hsa-mir-490|miR-490 microRNA 490 ncRNA 125.833-28 chr16 65560189 65560723 + 0.833333 NA intron (NR_027755, intron 2 of 8) AluSx1|SINE|Alu 15844 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 268-11 chr2 121378158 121378637 + 0.833333 NA intron (NM_001207051, intron 31 of 37) intron (NM_001207051, intron 31 of 37) -93195 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 118-2 chr1 53591516 53591749 + 0.833333 NA intron (NM_147193, intron 3 of 9) MIR|SINE|MIR 132233 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 131.333-2 chr1 71416349 71416625 + 0.833333 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 335163 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 167.167-12 chr10 72526861 72527149 + 0.833333 NA intron (NM_001363513, intron 5 of 12) intron (NM_001363513, intron 5 of 12) -3019 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 119.667-103 chr9 26886239 26886454 + 0.833333 NA intron (NM_001167575, intron 2 of 5) intron (NM_001167575, intron 2 of 5) 6456 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 257.5-2 chr1 97149186 97149777 + 0.833333 NA intron (NM_000110, intron 20 of 22) AluSx|SINE|Alu 53558 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 125.667-81 chr3 168253491 168253801 + 0.833333 NA intron (NR_021485, intron 1 of 15) intron (NR_021485, intron 1 of 15) 4124 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 234-38 chrX 51184226 51184669 + 0.833333 NA Intergenic Intergenic -13026 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 216.5-15 chr2 117979895 117980298 + 0.833333 NA intron (NM_019044, intron 7 of 23) intron (NM_019044, intron 7 of 23) 33974 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 173.5-40 chr3 187141354 187141597 + 0.833333 NA Intergenic AluSx|SINE|Alu -1979 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 197.5 chr1 57300803 57301068 + 0.833333 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) 122177 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 288.833 chr12 9938605 9939059 + 0.833333 NA intron (NR_104634, intron 4 of 4) intron (NR_104634, intron 4 of 4) 4663 NR_104634 100506159 Hs.282397 NR_104634 ENSG00000225231 LINC02470 - long intergenic non-protein coding RNA 2470 ncRNA 184.833-34 chr7 144746498 144746719 + 0.833333 NA intron (NM_001042482, intron 3 of 7) intron (NM_001042482, intron 3 of 7) -7710 NM_001350884 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 229.833-22 chr9 115899349 115899782 + 0.833333 NA intron (NR_024032, intron 2 of 2) intron (NR_024032, intron 2 of 2) 25642 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 201.167-11 chr2 39423531 39423893 + 0.833333 NA intron (NM_003618, intron 1 of 33) L1MC2|LINE|L1 13573 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 216-20 chr3 70964013 70964459 + 0.833333 NA intron (NR_146142, intron 19 of 19) intron (NR_146142, intron 19 of 19) 100688 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 252.5-3 chr10 34711973 34712524 + 0.833333 NA intron (NM_001184789, intron 1 of 22) intron (NM_001184789, intron 1 of 22) 103048 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 221.333-30 chr8 78543446 78543788 + 0.833333 NA intron (NR_125389, intron 2 of 2) intron (NR_125389, intron 2 of 2) 14886 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 230.5-2 chr10 28078920 28079266 + 0.833333 NA intron (NR_134518, intron 11 of 16) intron (NR_134518, intron 11 of 16) -5715 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 195.167-21 chr21 14658022 14658440 + 0.833333 NA Intergenic Intergenic -15124 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 168.333-51 chr7 94588980 94589290 + 0.833333 NA intron (NM_001346717, intron 8 of 9) intron (NM_001346717, intron 8 of 9) 66998 NM_001346713 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 232.333-25 chr5 30471764 30472079 + 0.833333 NA Intergenic Intergenic 591361 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 118.333-28 chr12 93898710 93898897 + 0.833333 NA intron (NR_135017, intron 2 of 2) LTR39|LTR|ERV1 44803 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 148-74 chr6 148771354 148771728 + 0.833333 NA intron (NM_005715, intron 1 of 7) intron (NM_005715, intron 1 of 7) 24511 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 155.167-27 chr20 44286181 44286631 + 0.833333 NA Intergenic L1M1|LINE|L1 24796 NM_001080472 128486 Hs.632269 NM_001080472 ENSG00000197296 FITM2 C20orf142|Fit2|dJ881L22.2 fat storage inducing transmembrane protein 2 protein-coding 140.167-57 chr5 146271962 146272149 + 0.833333 NA intron (NM_018989, intron 19 of 20) intron (NM_018989, intron 19 of 20) -66784 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 208-35 chr7 20614137 20614563 + 0.833333 NA Intergenic L1MA9|LINE|L1 -1317 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 286.667-15 chr8 114741198 114741821 + 0.833333 NA Intergenic AluSx3|SINE|Alu 926504 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 302.167-3 chr12 17981280 17982018 + 0.833333 NA Intergenic Intergenic 108544 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 148.167-33 chr17 61546898 61547184 + 0.833333 NA Intergenic L1MEi|LINE|L1 44178 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 177-40 chr20 2828600 2828939 + 0.833333 NA Intergenic L1ME1|LINE|L1 11886 NM_022760 64773 Hs.29341 NM_022760 ENSG00000132635 PCED1A C20orf81|FAM113A|bA12M19.1 PC-esterase domain containing 1A protein-coding 151.833-46 chr5 73722797 73723127 + 0.833333 NA intron (NM_001177693, intron 2 of 35) intron (NM_001177693, intron 2 of 35) -90584 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 155.333-87 chr6 94104247 94104530 + 0.833333 NA Intergenic LTR16A1|LTR|ERVL 386085 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 192.833-21 chr21 28546969 28547382 + 0.833333 NA Intergenic Intergenic 7857 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 120.5-66 chr4 65888644 65889014 + 0.833333 NA Intergenic MIR|SINE|MIR -218334 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 150.333-98 chr8 15331764 15332137 + 0.833333 NA Intergenic Intergenic -93519 NM_001322881 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 155.667-73 chr7 52711479 52711720 + 0.833333 NA Intergenic L1MCa|LINE|L1 -324034 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 273.833-10 chr5 50743459 50743831 + 0.833333 NA intron (NM_024615, intron 2 of 25) intron (NM_024615, intron 2 of 25) 76231 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 228.667-21 chr2 82854019 82854454 + 0.833333 NA Intergenic L2c|LINE|L2 -2567 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 243-29 chr8 51060161 51060564 + 0.833333 NA Intergenic L1MD2|LINE|L1 749083 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 149.5-48 chr4 96981007 96981249 + 0.833333 NA Intergenic L1M4|LINE|L1 -385798 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 168.167-21 chr15 87856472 87856697 + 0.833333 NA Intergenic Intergenic 89684 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 180.833-13 chr13 59339307 59339556 + 0.833333 NA Intergenic L2c|LINE|L2 -673287 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 146.167-7 chr1 217027174 217027443 + 0.833333 NA intron (NM_001243509, intron 1 of 8) intron (NM_001243509, intron 1 of 8) 49684 NM_001243507 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 142.333-99 chr8 120287603 120287964 + 0.833333 NA intron (NM_021110, intron 33 of 47) intron (NM_021110, intron 33 of 47) 157367 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 164.167-36 chr2 153870982 153871347 + 0.833333 NA promoter-TSS (NM_052917) promoter-TSS (NM_052917) -758 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 236-10 chr18 7773995 7774351 + 0.833333 NA exon (NM_001105244, exon 2 of 33) exon (NM_001105244, exon 2 of 33) 206857 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 203.5-21 chr2 103953244 103953540 + 0.833333 NA Intergenic Intergenic 454940 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 183.333-7 chr10 27002404 27002723 + 0.833333 NA Intergenic MER6|DNA|TcMar-Tigger -60562 NR_026795 387644 Hs.529965 NR_026795 ENSG00000283709 FAM238C C10orf51|LINC00202|LINC00202-1|NCRNA00202|bB27G4.1 family with sequence similarity 238 member C ncRNA 128.667-57 chr17 72718940 72719136 + 0.833333 NA intron (NM_001352692, intron 7 of 9) AluSz6|SINE|Alu -78566 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 129-80 chr6 4361658 4361865 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR -127037 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 135.5-22 chr12 12446570 12446884 + 0.833333 NA intron (NM_001300742, intron 3 of 3).2 intron (NM_001300742, intron 3 of 3).2 89649 NM_058169 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 124.333-84 chr5 86750617 86750938 + 0.833333 NA Intergenic Intergenic 3959 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 154.333-13 chr10 120184555 120185102 + 0.833333 NA Intergenic MIRb|SINE|MIR 170395 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 184.667-17 chr14 44829624 44829999 + 0.833333 NA Intergenic Intergenic -30685 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 217.5-21 chr19 57554490 57554900 + 0.833333 NA intron (NM_001277091, intron 2 of 5) intron (NM_001277091, intron 2 of 5) 5168 NM_001277092 162972 Hs.180257 NM_153231 ENSG00000251369 ZNF550 - zinc finger protein 550 protein-coding 127.833-78 chr8 127622827 127623090 + 0.833333 NA Intergenic L3|LINE|CR1 111009 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 292.167-11 chr8 82743207 82743651 + 0.833333 NA Intergenic Intergenic -168675 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 171.333-64 chr8 121303998 121304328 + 0.833333 NA Intergenic (AACTGAT)n|Simple_repeat|Simple_repeat -335183 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 166.167-17 chr15 97696943 97697323 + 0.833333 NA Intergenic LTR47A|LTR|ERVL -136435 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 134.167-25 chr14 85129033 85129452 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR -142690 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 200-24 chr16 71492931 71493339 + 0.833333 NA Intergenic LTR38B|LTR|ERV1 -3811 NM_006961 7567 Hs.660076 NM_006961 ENSG00000157429 ZNF19 KOX12 zinc finger protein 19 protein-coding 228.167-14 chr3 30469736 30470138 + 0.833333 NA Intergenic Intergenic -48931 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 163-64 chr8 128512041 128512397 + 0.833333 NA intron (NR_121672, intron 2 of 7) Charlie15b|DNA|hAT-Charlie 52460 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 206.167-28 chr8 110834371 110834796 + 0.833333 NA Intergenic HUERS-P3-int|LTR|ERV1 192850 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 233.667-4 chr11 37232145 37232528 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR -634057 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 148.667-50 chr3 197814877 197815102 + 0.833333 NA exon (NM_032773, exon 2 of 19) exon (NM_032773, exon 2 of 19) 23735 NR_158582 84859 Hs.518414 NM_032773 ENSG00000186001 LRCH3 - leucine rich repeats and calponin homology domain containing 3 protein-coding 130.667-8 chr10 60630343 60630560 + 0.833333 NA intron (NM_001204403, intron 1 of 43) L2a|LINE|L2 -57495 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 121-38 chr17 59566975 59567181 + 0.833333 NA intron (NM_024612, intron 2 of 17) intron (NM_024612, intron 2 of 17) 1468 NM_024612 79665 Hs.29403 NM_024612 ENSG00000108406 DHX40 ARG147|DDX40|PAD DEAH-box helicase 40 protein-coding 213.167-3 chr10 20603120 20603496 + 0.833333 NA Intergenic L2a|LINE|L2 51338 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 200.833-17 chr2 128069876 128070181 + 0.833333 NA Intergenic LTR47B2|LTR|ERVL -21172 NR_027671 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 183-58 chr9 35787459 35787728 + 0.833333 NA Intergenic Intergenic -4816 NM_003995 4882 Hs.78518 NM_000907 ENSG00000159899 NPR2 AMDM|ANPRB|ANPb|ECDM|GUC2B|GUCY2B|NPRB|NPRBi|SNSK natriuretic peptide receptor 2 protein-coding 260.833-9 chr20 37174426 37174884 + 0.833333 NA intron (NM_152503, intron 2 of 24) AluSx|SINE|Alu -4391 NM_001324301 6185 Hs.370895 NM_002951 ENSG00000118705 RPN2 RIBIIR|RPN-II|RPNII|SWP1 ribophorin II protein-coding 116.5-58 chr4 29482640 29482804 + 0.833333 NA Intergenic AluSx3|SINE|Alu 268430 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 120.5-45 chr18 2885914 2886156 + 0.833333 NA intron (NM_032048, intron 3 of 7) intron (NM_032048, intron 3 of 7) 39029 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 394.334 chr15 100499627 100500255 + 0.833333 NA intron (NM_001290341, intron 5 of 13) MIRc|SINE|MIR 44345 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 171.333-35 chr2 99010621 99011002 + 0.833333 NA intron (NR_146001, intron 18 of 18) L1PB1|LINE|L1 -74586 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 121.667-66 chr3 113199098 113199507 + 0.833333 NA Intergenic Intergenic -12255 NM_001301867 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 334-2 chr12 8651310 8651962 + 0.833333 NA intron (NM_001297711, intron 5 of 7) intron (NM_001297711, intron 5 of 7) 11190 NR_123734 8076 Hs.512842 NM_003480 ENSG00000197614 MFAP5 AAT9|MAGP-2|MAGP2|MFAP-5|MP25 microfibril associated protein 5 protein-coding 130.833-16 chr14 61515238 61515475 + 0.833333 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 54838 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 121.833-53 chr4 111215688 111215941 + 0.833333 NA Intergenic MamRTE1|LINE|RTE-BovB -355167 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 172-65 chr7 25867319 25867602 + 0.833333 NA Intergenic Intergenic -77341 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 210.833-3 chr10 20567588 20567952 + 0.833333 NA Intergenic Intergenic 15800 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 179.167-23 chr2 5777519 5777977 + 0.833333 NA Intergenic Intergenic 34848 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 145-96 chr9 31448186 31448419 + 0.833333 NA Intergenic Intergenic -66812 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 181.5-42 chr4 37092556 37092798 + 0.833333 NA Intergenic L1PA15-16|LINE|L1 90898 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 116.333-36 chr13 71596015 71596273 + 0.833333 NA intron (NM_001366712, intron 3 of 11) intron (NM_001366712, intron 3 of 11) 271048 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 195-22 chr2 180103879 180104156 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -96720 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 253.333-12 chr3 24921730 24922147 + 0.833333 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 92615 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 230.667-15 chr2 207288119 207288475 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -18873 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 189-34 chr3 181086199 181086587 + 0.833333 NA intron (NR_075091, intron 1 of 7) intron (NR_075091, intron 1 of 7) 29713 NR_075092 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 202.667-56 chrX 100396578 100396888 + 0.833333 NA intron (NM_020766, intron 2 of 4) intron (NM_020766, intron 2 of 4) 13540 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 145.667-55 chr20 21582548 21582722 + 0.833333 NA intron (NR_109880, intron 1 of 3) intron (NR_109880, intron 1 of 3) 12611 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 128.167-39 chr2 37539692 37539939 + 0.833333 NA Intergenic Intergenic 132384 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 116.333-13 chr10 35896086 35896371 + 0.833333 NA Intergenic Intergenic 117926 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 145.167-28 chr17 58481337 58481609 + 0.833333 NA intron (NM_001080439, intron 1 of 5) intron (NM_001080439, intron 1 of 5) 6935 NM_001080439 124535 Hs.380061 NM_001080439 ENSG00000176160 HSF5 HSF 5|HSTF 5 heat shock transcription factor 5 protein-coding 172.833-24 chr19 43878607 43878861 + 0.833333 NA intron (NM_001033719, intron 1 of 1) intron (NM_001033719, intron 1 of 1) 1402 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 211.5-2 chr10 4645915 4646342 + 0.833333 NA Intergenic Intergenic -10028 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 134.5-72 chr8 113738053 113738233 + 0.833333 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -301204 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 224.5-10 chr15 59024696 59025047 + 0.833333 NA intron (NM_001270530, intron 1 of 13) L1MB3|LINE|L1 36725 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 172.333-29 chr17 61041002 61041375 + 0.833333 NA intron (NM_001330413, intron 20 of 25) intron (NM_001330413, intron 20 of 25) 326516 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 225.667-10 chr15 62039135 62039620 + 0.833333 NA intron (NM_001018088, intron 3 of 81) L1PB4|LINE|L1 21070 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 148.333-53 chr2 199331269 199331670 + 0.833333 NA intron (NM_001172509, intron 7 of 10) intron (NM_001172509, intron 7 of 10) 126470 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 140.833-64 chr8 132220097 132220405 + 0.833333 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -114986 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 150.167-47 chr4 94715970 94716238 + 0.833333 NA Intergenic Intergenic 41429 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 129-2 chr1 45405666 45405975 + 0.833333 NA intron (NM_007170, intron 3 of 10) AluJb|SINE|Alu -65350 NM_001293192 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 195.833-27 chr7 89768116 89768552 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -351066 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 157.667-3 chr1 53262847 53263149 + 0.833333 NA intron (NM_004631, intron 10 of 18) LTR33|LTR|ERVL 24388 NR_038953 100507564 Hs.592502 NR_038953 ENSG00000226754 LOC100507564 - uncharacterized LOC100507564 ncRNA 115.167-83 chr5 32877687 32877962 + 0.833333 NA Intergenic L1MA5A|LINE|L1 -69619 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 162.5-39 chr20 45620850 45621206 + 0.833333 NA intron (NM_147198, intron 1 of 4) L1MEh|LINE|L1 -8711 NM_080753 140832 Hs.199380 NM_080753 ENSG00000180305 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 167.333-34 chr2 86644378 86644715 + 0.833333 NA intron (NM_001198954, intron 2 of 7) L1MC4a|LINE|L1 -20669 NM_001198951 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 226.833-6 chr13 77381119 77381446 + 0.833333 NA Intergenic FLAM_A|SINE|Alu -54188 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|PHR1|Phr MYC binding protein 2 protein-coding 241.667-8 chr12 41329711 41330200 + 0.833333 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -107784 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 126.667-13 chr10 81454246 81454536 + 0.833333 NA Intergenic L1MB7|LINE|L1 -420803 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 194.167-35 chr6 142134126 142134390 + 0.833333 NA intron (NM_001358410, intron 2 of 2) intron (NM_001358410, intron 2 of 2) 1099 NM_001358410 100126572 NM_001358410 ENSG00000203733 GJE1 CX23 gap junction protein epsilon 1 protein-coding 158.333-53 chr3 126233171 126233462 + 0.833333 NA Intergenic L1M4|LINE|L1 -52130 NM_001270364 10840 Hs.434435 NM_012190 ENSG00000144908 ALDH1L1 10-FTHFDH|10-fTHF|FDH|FTHFD aldehyde dehydrogenase 1 family member L1 protein-coding 143.667-73 chr3 128758460 128758715 + 0.833333 NA intron (NM_004637, intron 1 of 5) intron (NM_004637, intron 1 of 5) 32451 NM_004637 7879 Hs.684374 NM_004637 ENSG00000075785 RAB7A PRO2706|RAB7 RAB7A, member RAS oncogene family protein-coding 163-27 chr19 47704219 47704455 + 0.833333 NA Intergenic Tigger17a|DNA|TcMar-Tigger -9085 NM_014601 30846 Hs.744963 NM_014601 ENSG00000024422 EHD2 PAST2 EH domain containing 2 protein-coding 133.667-75 chr5 173378839 173379132 + 0.833333 NA Intergenic Intergenic 31530 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 211.333-49 chr7 121665632 121665927 + 0.833333 NA Intergenic AluSg4|SINE|Alu -207382 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 123.5-10 chr10 20015371 20015540 + 0.833333 NA intron (NM_001282736, intron 2 of 12) intron (NM_001282736, intron 2 of 12) 199023 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 180.333-22 chr16 55188988 55189462 + 0.833333 NA Intergenic Intergenic -135334 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 161.167-28 chr2 39653513 39653824 + 0.833333 NA Intergenic L2-3_Crp|LINE|L2 -11830 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 127.167-24 chr12 23959571 23960031 + 0.833333 NA intron (NM_152989, intron 4 of 17) L1ME4b|LINE|L1 -8769 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 210.667-13 chr14 42857954 42858456 + 0.833333 NA Intergenic Intergenic 1251349 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 197.667-57 chr7 83210233 83210519 + 0.833333 NA Intergenic Intergenic -47492 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 235-15 chr16 2356894 2357313 + 0.833333 NA intron (NR_003574, intron 1 of 16) L1MC1|LINE|L1 16181 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP binding cassette subfamily A member 17, pseudogene pseudo 183-12 chr17 53793289 53793866 + 0.833333 NA Intergenic Charlie2a|DNA|hAT-Charlie -29350 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 139-31 chr2 139598710 139599002 + 0.833333 NA Intergenic L1MEg2|LINE|L1 701532 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 141-30 chr14 95541949 95542160 + 0.833333 NA intron (NM_016417, intron 1 of 1) intron (NM_016417, intron 1 of 1) 7004 NM_016417 51218 Hs.744943 NM_016417 ENSG00000182512 GLRX5 C14orf87|FLB4739|GRX5|PR01238|PRO1238|PRSA|SIDBA3|SPAHGC glutaredoxin 5 protein-coding 208.167-24 chr5 123944313 123944607 + 0.833333 NA Intergenic Intergenic 399043 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 118.667-16 chr10 62808275 62808642 + 0.833333 NA TTS (NM_032804) TTS (NM_032804) 3738 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 119.167-65 chr3 168424687 168424901 + 0.833333 NA intron (NR_021485, intron 3 of 15) intron (NR_021485, intron 3 of 15) -127060 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 131.5-66 chr5 123828432 123828676 + 0.833333 NA Intergenic L1MA4A|LINE|L1 283137 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 241.333-17 chr22 34266180 34266621 + 0.833333 NA Intergenic (TATATA)n|Simple_repeat|Simple_repeat -343512 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 177-65 chr7 44494756 44495208 + 0.833333 NA Intergenic L1MC3|LINE|L1 -4324 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 140.667-82 chr7 140809021 140809572 + 0.833333 NA intron (NR_148928, intron 3 of 17) intron (NR_148928, intron 3 of 17) -112219 NR_024454 100134713 Hs.534141 NR_024454 ENSG00000240889 NDUFB2-AS1 - NDUFB2 antisense RNA 1 ncRNA 167.167-36 chr2 99008044 99008353 + 0.833333 NA intron (NR_146001, intron 18 of 18) L1MC5a|LINE|L1 -71973 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 283.667-12 chr2 202114842 202115365 + 0.833333 NA non-coding (NR_135244, exon 2 of 4) non-coding (NR_135244, exon 2 of 4) 1955 NR_135243 729224 Hs.623895 NR_135243 KIAA2012-AS1 - KIAA2012 antisense RNA 1 ncRNA 177.167-17 chr2 36132915 36133231 + 0.833333 NA Intergenic Intergenic 222497 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 176.333-59 chr8 102042719 102042962 + 0.833333 NA intron (NM_001040624, intron 1 of 7) LTR78|LTR|ERV1 58408 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 131.667-71 chr22 26795231 26795554 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR -64819 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 161.167-53 chr7 28727031 28727397 + 0.833333 NA intron (NM_001011666, intron 3 of 6) intron (NM_001011666, intron 3 of 6) 41081 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 210.333-21 chr2 223145963 223146528 + 0.833333 NA Intergenic Intergenic 94315 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 115.5-69 chr3 173968398 173968655 + 0.833333 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -47730 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 122.5-91 chr7 84936318 84936520 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger 185512 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 207.166 chr5 15774749 15775305 + 0.833333 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -160025 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 172.333-53 chr3 173391786 173392161 + 0.833333 NA Intergenic Intergenic -3979 NM_001365924 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 125.667 chr1 40414040 40414343 + 0.833333 NA exon (NM_001198978, exon 6 of 10) exon (NM_001198978, exon 6 of 10) 17391 NM_001198980 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 209-16 chr12 21331934 21332301 + 0.833333 NA intron (NM_021094, intron 1 of 13) MER4B|LTR|ERV1 2800 NM_021094 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 157.167-60 chr8 7046731 7046970 + 0.833333 NA Intergenic Intergenic 9889 NM_021010 1670 Hs.655233 NM_021010 ENSG00000164816 DEFA5 DEF5|HD-5 defensin alpha 5 protein-coding 163.833-20 chr14 76181700 76181942 + 0.833333 NA intron (NM_001322028, intron 8 of 9) intron (NM_001322028, intron 8 of 9) 27467 NR_110314 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 206-17 chr2 41297855 41298285 + 0.833333 NA Intergenic Intergenic -579485 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 119.667-67 chr4 12027513 12027746 + 0.833333 NA Intergenic Intergenic -195822 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 224.667-18 chr2 215701341 215701740 + 0.833333 NA intron (NR_037195, intron 5 of 9) AluY|SINE|Alu -16503 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 124.5-34 chr2 41981810 41982135 + 0.833333 NA Intergenic Arthur1B|DNA|hAT-Tip100 -28166 NR_161189 400950 Hs.738713 NM_001242815 ENSG00000205086 C2orf91 - chromosome 2 open reading frame 91 ncRNA 255.333-10 chr17 29928704 29929139 + 0.833333 NA promoter-TSS (NM_001145053) promoter-TSS (NM_001145053) -982 NM_001145053 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 160.167-36 chr22 21663444 21663768 + 0.833333 NA Intergenic AluSx|SINE|Alu -2378 NM_001317996 23759 Hs.438587 NM_014337 ENSG00000100023 PPIL2 CYC4|CYP60|Cyp-60|UBOX7|hCyP-60 peptidylprolyl isomerase like 2 protein-coding 159.167-59 chr6 166960675 166960899 + 0.833333 NA Intergenic Intergenic -4237 NM_003730 8635 Hs.529989 NM_003730 ENSG00000026297 RNASET2 RNASE6PL|bA514O12.3 ribonuclease T2 protein-coding 167.167-33 chr17 73429184 73429518 + 0.833333 NA intron (NM_001144952, intron 12 of 44) intron (NM_001144952, intron 12 of 44) -84332 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 148-43 chr2 125989894 125990192 + 0.833333 NA Intergenic L1MA3|LINE|L1 127942 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 156.333-14 chr10 121917308 121917670 + 0.833333 NA intron (NM_001288735, intron 1 of 9) HAL1|LINE|L1 10542 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 117.167-29 chr16 89938790 89938950 + 0.833333 NA Intergenic Intergenic -9861 NM_001242821 54849 Hs.62771 NM_017702 ENSG00000140995 DEF8 - differentially expressed in FDCP 8 homolog protein-coding 172.667-51 chr3 99047925 99048169 + 0.833333 NA Intergenic Intergenic -146352 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 296-6 chr14 70619253 70619807 + 0.833333 NA intron (NR_110071, intron 2 of 2) MIR|SINE|MIR -18840 NM_001284211 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 141.833-35 chr5 146953017 146953307 + 0.833333 NA intron (NM_001271900, intron 2 of 10) intron (NM_001271900, intron 2 of 10) -33656 NR_047115 100874361 Hs.193825 NR_047115 ENSG00000249553 PPP2R2B-IT1 - PPP2R2B intronic transcript 1 ncRNA 157.167-70 chrX 97208212 97208609 + 0.833333 NA intron (NM_007309, intron 22 of 26) intron (NM_007309, intron 22 of 26) 324502 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 252.167-8 chr2 139672926 139673355 + 0.833333 NA Intergenic Intergenic 775816 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 215.833-20 chr6 158443297 158443664 + 0.833333 NA intron (NM_020245, intron 3 of 13) intron (NM_020245, intron 3 of 13) -92956 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 135-14 chr11 14923983 14924149 + 0.833333 NA Intergenic Intergenic -31861 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 131.333-91 chr6 52716854 52717149 + 0.833333 NA Intergenic Intergenic 28158 NR_033760 730152 Hs.739662 NR_033760 GSTA7P GSTAP2|GSTAP6 glutathione S-transferase alpha 7, pseudogene pseudo 248.666 chr12 51698749 51699251 + 0.833333 NA intron (NM_001369788, intron 6 of 25) L2c|LINE|L2 107764 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 176-13 chr17 53921425 53921679 + 0.833333 NA Intergenic Intergenic 98625 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 132.333-3 chr1 48399337 48399535 + 0.833333 NA exon (NM_001286239, exon 6 of 12) exon (NM_001286239, exon 6 of 12) 72768 NM_019073 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 210.833-25 chr5 134988843 134989299 + 0.833333 NA intron (NM_178019, intron 2 of 7) Tigger1|DNA|TcMar-Tigger 21164 NM_178019 347732 Hs.631804 NM_178019 ENSG00000152705 CATSPER3 CACRC cation channel sperm associated 3 protein-coding 137.5-74 chr4 107147054 107147586 + 0.833333 NA Intergenic L4_B_Mam|LINE|RTE-X -111007 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 150.833-10 chr14 49421552 49421793 + 0.833333 NA Intergenic Intergenic 164708 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 154.833-4 chr1 175777045 175777305 + 0.833333 NA Intergenic L1PA13|LINE|L1 -33580 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 161.5-38 chr5 152263238 152263606 + 0.833333 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 141857 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 265.333 chr1 24324521 24325024 + 0.833333 NA intron (NM_021180, intron 1 of 15) MIR1_Amn|SINE|MIR 1732 NM_021180 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 283.833-8 chr8 129418582 129419024 + 0.833333 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 65339 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 182.167-31 chr4 148338330 148338765 + 0.833333 NA intron (NM_000901, intron 2 of 8) intron (NM_000901, intron 2 of 8) 103867 NM_001166104 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 134.833-71 chr9 34774001 34774162 + 0.833333 NA Intergenic L1MB3|LINE|L1 -44593 NM_001141917 259308 Hs.522093 NM_001141917 ENSG00000205108 FAM205A C9orf144B family with sequence similarity 205 member A protein-coding 185.833-23 chr3 99501469 99501871 + 0.833333 NA Intergenic Intergenic -136924 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 129.167-42 chr2 166580492 166580839 + 0.833333 NA Intergenic Intergenic -93694 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 141.167-67 chr6 49319767 49319987 + 0.833333 NA Intergenic Intergenic 143376 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 140.667-75 chr6 139483850 139484055 + 0.833333 NA Intergenic L2a|LINE|L2 -9356 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 285.834-3 chr3 52941928 52942682 + 0.833333 NA intron (NM_016329, intron 4 of 20) L1MC4|LINE|L1 -44757 NM_198563 375346 Hs.744189 NM_198563 ENSG00000213533 STIMATE TMEM110 STIM activating enhancer protein-coding 190.167-50 chr9 8895020 8895373 + 0.833333 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) 37178 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 176.167-36 chr5 94081630 94081991 + 0.833333 NA intron (NM_032042, intron 1 of 10) intron (NM_032042, intron 1 of 10) 29853 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 140.167-46 chr3 180699399 180699736 + 0.833333 NA Intergenic Intergenic -20078 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 178-20 chr16 20083541 20083834 + 0.833333 NA Intergenic L1MB1|LINE|L1 -9909 NM_001318483 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 219.333-46 chrY 11295667 11296026 + 0.833333 NA Intergenic Intergenic 1125744 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 224.333-16 chr2 53514048 53514518 + 0.833333 NA Intergenic L2|LINE|L2 -253500 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 159.833-22 chr15 70618095 70618444 + 0.833333 NA Intergenic LTR33C|LTR|ERVL 2722 NR_126481 104548972 NR_126481 ENSG00000281264 SALRNA3 SAL-RNA3|XLOC_025918 senescence associated long non-coding RNA 3 ncRNA 201.667-6 chr10 72700852 72701283 + 0.833333 NA intron (NM_001270680, intron 1 of 7) intron (NM_001270680, intron 1 of 7) 8448 NM_001270680 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 181.333-27 chr18 76160452 76160899 + 0.833333 NA Intergenic Intergenic 37677 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 123.5-50 chr2 147867298 147867711 + 0.833333 NA intron (NM_001278579, intron 2 of 11) intron (NM_001278579, intron 2 of 11) 22475 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 190.667-58 chr8 85259651 85259960 + 0.833333 NA intron (NM_198584, intron 3 of 6) MIRb|SINE|MIR 14347 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 199-3 chr1 188961987 188962485 + 0.833333 NA Intergenic L1MDb|LINE|L1 1513774 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 117.833-45 chr2 114467202 114467469 + 0.833333 NA intron (NM_001321908, intron 2 of 25) MER102b|DNA|hAT-Charlie 5758 NM_001321905 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 124.833-37 chr2 56403972 56404504 + 0.833333 NA Intergenic Intergenic -218468 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 179.833-14 chr17 31407560 31407948 + 0.833333 NA intron (NM_032932, intron 1 of 14) L1MC4|LINE|L1 16079 NM_032932 84440 Hs.406788 NM_032932 ENSG00000131242 RAB11FIP4 FIP4-Rab11|RAB11-FIP4 RAB11 family interacting protein 4 protein-coding 148-46 chr2 204844499 204844713 + 0.833333 NA intron (NM_205863, intron 2 of 21) L2c|LINE|L2 299131 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 172-66 chr7 52339455 52339752 + 0.833333 NA Intergenic Intergenic -696030 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 202-17 chr2 30806040 30806373 + 0.833333 NA intron (NM_144575, intron 1 of 22) MIR1_Amn|SINE|MIR 1240 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 172.5-13 chr11 90465062 90465340 + 0.833333 NA intron (NR_104190, intron 1 of 6) L1MC3|LINE|L1 90656 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 218.5-13 chr16 20638213 20638567 + 0.833333 NA intron (NR_134918, intron 7 of 10) L2c|LINE|L2 52866 NR_134918 116285 Hs.306812 NM_052956 ENSG00000166743 ACSM1 BUCS1|MACS1 acyl-CoA synthetase medium chain family member 1 protein-coding 143.5-4 chr10 43328596 43328856 + 0.833333 NA Intergenic L1MD2|LINE|L1 -42910 NM_173160 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 127.333-117 chr8 131357816 131358079 + 0.833333 NA Intergenic MER9a2|LTR|ERVK -317038 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 175-8 chr10 15513715 15514084 + 0.833333 NA TTS (NM_003638) TTS (NM_003638) -142610 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 132.833-16 chr11 113455533 113455984 + 0.833333 NA intron (NM_016574, intron 1 of 6) L1MA7|LINE|L1 -5670 NR_036183 100422855 NR_036183 ENSG00000265140 MIR4301 - microRNA 4301 ncRNA 167.833-50 chr6 79241452 79241859 + 0.833333 NA Intergenic Intergenic -6973 NM_138730 9324 Hs.77558 NM_004242 ENSG00000118418 HMGN3 PNAS-24|PNAS-25|TRIP7 high mobility group nucleosomal binding domain 3 protein-coding 121.667-70 chr4 52549883 52550232 + 0.833333 NA Intergenic Intergenic 106482 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 156.167-47 chr5 43767859 43768165 + 0.833333 NA Intergenic L2a|LINE|L2 -164782 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 201.667-25 chr4 71938828 71939093 + 0.833333 NA Intergenic AluJr|SINE|Alu -92844 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 163.833-17 chr12 109356588 109356893 + 0.833333 NA intron (NR_120462, intron 2 of 2) intron (NR_120462, intron 2 of 2) 2748 NR_120462 101928138 Hs.143843 NR_120462 ENSG00000256560 LINC01486 - long intergenic non-protein coding RNA 1486 ncRNA 232.5-3 chr10 37442760 37443234 + 0.833333 NA Intergenic AluJo|SINE|Alu 133811 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 240.667-10 chr11 117034408 117034712 + 0.833333 NA intron (NM_001366687, intron 1 of 4) intron (NM_001366687, intron 1 of 4) 63868 NM_001281749 23387 Hs.167451 NM_025164 ENSG00000160584 SIK3 L19|QSK|SEMDK|SIK-3 SIK family kinase 3 protein-coding 236.833-15 chr8 39958759 39959298 + 0.833333 NA intron (NM_194294, intron 2 of 10) LTR37B|LTR|ERV1 24073 NM_194294 169355 Hs.676257 NM_194294 ENSG00000188676 IDO2 INDOL1 indoleamine 2,3-dioxygenase 2 protein-coding 240.833-18 chr2 198466296 198466646 + 0.833333 NA Intergenic Intergenic -91374 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 145.667-24 chr12 118646125 118646444 + 0.833333 NA Intergenic MLT1L|LTR|ERVL-MaLR 115395 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 142.333-82 chr5 27918012 27918307 + 0.833333 NA Intergenic L1MB8|LINE|L1 369506 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 146.167-15 chr14 20553295 20553799 + 0.833333 NA Intergenic L1MB3|LINE|L1 7384 NM_001110361 390443 Hs.533972 NM_001001673 ENSG00000188655 RNASE9 HEL128|RAK1|h461 ribonuclease A family member 9 (inactive) protein-coding 153-7 chr10 52157489 52157710 + 0.833333 NA intron (NM_001098512, intron 8 of 17) intron (NM_001098512, intron 8 of 17) 156529 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 152.667-40 chr18 76521549 76521874 + 0.833333 NA Intergenic Intergenic -6944 NR_015417 284276 Hs.390287 NR_015417 ENSG00000266256 LINC00908 - long intergenic non-protein coding RNA 908 ncRNA 214.833-17 chr5 3087987 3088395 + 0.833333 NA Intergenic AluSx|SINE|Alu -89644 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 164-10 chr11 77035717 77036052 + 0.833333 NA intron (NM_138706, intron 1 of 1) intron (NM_138706, intron 1 of 1) 1486 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 174.333-68 chr8 104681946 104682203 + 0.833333 NA Intergenic Intergenic -93050 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 113.167-31 chr18 9504383 9504781 + 0.833333 NA intron (NM_006788, intron 1 of 9) intron (NM_006788, intron 1 of 9) 29069 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 161.667-15 chr10 15819947 15820329 + 0.833333 NA intron (NM_024948, intron 9 of 14) L2c|LINE|L2 40369 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 202.667-8 chr11 83195506 83195804 + 0.833333 NA intron (NM_001300975, intron 1 of 10) L2c|LINE|L2 1943 NM_001300976 338699 Hs.503438 NM_182603 ENSG00000137494 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 146-39 chr2 160839091 160839418 + 0.833333 NA Intergenic Intergenic -297701 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 138.667-51 chr20 24137370 24137818 + 0.833333 NA Intergenic Intergenic -62173 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 178.833-37 chr8 136713258 136713834 + 0.833333 NA intron (NR_147196, intron 2 of 5) AluSp|SINE|Alu 182748 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 192-8 chr10 99369080 99369523 + 0.833333 NA intron (NM_001345889, intron 7 of 10) intron (NM_001345889, intron 7 of 10) 39945 NM_020348 26507 Hs.274579 NM_020348 ENSG00000119946 CNNM1 ACDP1|CLP-1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding 244-23 chr8 13612166 13612614 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR -7770 NM_001348081 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 162.333-77 chr9 29218592 29218881 + 0.833333 NA Intergenic LTR80A|LTR|ERVL -5135 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 218.667-38 chr7 24047945 24048264 + 0.833333 NA Intergenic Intergenic -236086 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 196.5-31 chr6 10208571 10208990 + 0.833333 NA Intergenic MamRep1879|DNA|hAT-Tip100? -195722 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 115.167-79 chr4 186236217 186236409 + 0.833333 NA intron (NM_001318396, intron 4 of 14) intron (NM_001318396, intron 4 of 14) 8806 NM_000892 3818 Hs.237642 NM_000892 ENSG00000164344 KLKB1 KLK3|PKK|PKKD|PPK kallikrein B1 protein-coding 306.333-3 chr3 152527720 152528094 + 0.833333 NA Intergenic Intergenic -186917 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 209.5-22 chr2 190563615 190564101 + 0.833333 NA Intergenic Intergenic -29136 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 190.333-3 chr1 63326912 63327372 + 0.833333 NA promoter-TSS (NR_106716) promoter-TSS (NR_106716) -158 NR_106716 102464823 NR_106716 ENSG00000275836 MIR6068 hsa-mir-6068 microRNA 6068 ncRNA 174.333-53 chr6 66319907 66320280 + 0.833333 NA Intergenic Intergenic 532214 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 208-14 chr15 92697155 92697505 + 0.833333 NA Intergenic AluY|SINE|Alu -41555 NM_207446 400451 Hs.27373 NM_207446 ENSG00000185442 FAM174B - family with sequence similarity 174 member B protein-coding 343-7 chr6 131501216 131502035 + 0.833333 NA Intergenic Intergenic -71601 NM_001369020 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 254.833-5 chr16 79763703 79764062 + 0.833333 NA intron (NR_104663, intron 2 of 5) intron (NR_104663, intron 2 of 5) -6589 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 197.167-24 chr2 65697510 65697910 + 0.833333 NA Intergenic Intergenic -265111 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 144.667-34 chr13 38042159 38042483 + 0.833333 NA Intergenic Intergenic 100911 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 211.667-45 chr9 29123249 29123674 + 0.833333 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 88838 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 119.333-2 chr1 79813817 79814033 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -721830 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 247.833-11 chr6 160449430 160449869 + 0.833333 NA intron (NM_021977, intron 10 of 10) intron (NM_021977, intron 10 of 10) 61475 NR_028092 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 133.5-17 chr11 67404542 67404720 + 0.833333 NA intron (NM_001369498, intron 1 of 8) intron (NM_001369498, intron 1 of 8) 548 NM_001369492 374403 Hs.534648 NM_198517 ENSG00000175463 TBC1D10C CARABIN|EPI64C TBC1 domain family member 10C protein-coding 155-23 chr13 81900224 81900597 + 0.833333 NA Intergenic Intergenic -673427 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 181.167-34 chr8 124646216 124646580 + 0.833333 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 82075 NM_001363299 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 164-69 chr7 74601658 74602023 + 0.833333 NA intron (NM_016328, intron 26 of 26) AluJb|SINE|Alu 5872 NR_162116 113218504 NR_162116 MIR10525 - microRNA 10525 ncRNA 147-47 chr22 43959979 43960169 + 0.833333 NA intron (NM_015380, intron 1 of 14) intron (NM_015380, intron 1 of 14) 4632 NM_015380 25813 Hs.505824 NM_015380 ENSG00000100347 SAMM50 CGI-51|OMP85|SAM50|TOB55|TRG-3|YNL026W SAMM50 sorting and assembly machinery component protein-coding 243-26 chr5 123846089 123846479 + 0.833333 NA Intergenic Intergenic 300867 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 291.833-8 chr8 82120045 82120457 + 0.833333 NA Intergenic HAL1|LINE|L1 -277965 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 134.833-10 chr11 91104792 91105248 + 0.833333 NA Intergenic Intergenic -235818 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 218.833-18 chr2 181916447 181916754 + 0.833333 NA non-coding (NR_109843, exon 11 of 18) non-coding (NR_109843, exon 11 of 18) 24870 NM_001287503 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 151.167-34 chr22 40085997 40086340 + 0.833333 NA intron (NM_001024843, intron 1 of 23) AluJb|SINE|Alu 41351 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 306.833-3 chr2 112757652 112758097 + 0.833333 NA intron (NR_130712, intron 3 of 9) intron (NR_130712, intron 3 of 9) 6735 NR_130712 150468 Hs.434250 NM_152515 ENSG00000169607 CKAP2L - cytoskeleton associated protein 2 like protein-coding 229.167-12 chr14 53975029 53975483 + 0.833333 NA Intergenic MER102c|DNA|hAT-Charlie -18365 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 163-32 chr2 138458560 138458865 + 0.833333 NA Intergenic L1PB1|LINE|L1 -43058 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 209-41 chr8 30689760 30690075 + 0.833333 NA intron (NM_001195102, intron 7 of 11) (TA)n|Simple_repeat|Simple_repeat -31681 NM_002095 2961 Hs.77100 NM_002095 ENSG00000197265 GTF2E2 FE|TF2E2|TFIIE-B|TTD6 general transcription factor IIE subunit 2 protein-coding 322.167-9 chr6 136329775 136330275 + 0.833333 NA Intergenic MIRb|SINE|MIR -40174 NM_001077440 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 237.5-28 chr7 106461522 106461911 + 0.833333 NA Intergenic MER4A1|LTR|ERV1 -176733 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 217.333-40 chr8 124472745 124473089 + 0.833333 NA non-coding (NR_108048, exon 3 of 3) non-coding (NR_108048, exon 3 of 3) 1437 NR_108048 101927612 Hs.633137 NR_108047 ENSG00000245149 RNF139-AS1 - RNF139 antisense RNA 1 (head to head) ncRNA 178.333-7 chr10 119827683 119828027 + 0.833333 NA 3' UTR (NM_001243194, exon 6 of 6) 3' UTR (NM_001243194, exon 6 of 6) 8598 NM_001243194 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 159.167-34 chr20 62850007 62850297 + 0.833333 NA intron (NM_006602, intron 5 of 5) L1MC5a|LINE|L1 5586 NM_080750 100132911 NM_080750 DPH3P1 C20orf143|DPH3B|ZCSL1 diphthamide biosynthesis 3 pseudogene 1 protein-coding 177-49 chr4 90750863 90751119 + 0.833333 NA intron (NM_001145065, intron 7 of 10) intron (NM_001145065, intron 7 of 10) 515960 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 113.667-53 chr18 1485015 1485252 + 0.833333 NA Intergenic Intergenic -125504 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 169.167-20 chr18 1762444 1762764 + 0.833333 NA Intergenic Intergenic -402975 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 233.5-28 chr8 119079913 119080282 + 0.833333 NA intron (NM_006438, intron 1 of 5) intron (NM_006438, intron 1 of 5) -11315 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 190-37 chr21 25454096 25454360 + 0.833333 NA Intergenic Intergenic -22527 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 123.833-4 chr1 178830212 178830464 + 0.833333 NA intron (NM_152663, intron 7 of 19) L1ME3F|LINE|L1 40739 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 240-20 chr2 148749174 148749601 + 0.833333 NA intron (NM_015630, intron 3 of 13) MLT1N2|LTR|ERVL-MaLR 104636 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 181-53 chr5 108989371 108989615 + 0.833333 NA intron (NR_146155, intron 13 of 19) intron (NR_146155, intron 13 of 19) 64887 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 148.167-11 chr11 27763226 27763504 + 0.833333 NA Intergenic MIRc|SINE|MIR -41335 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 125.333-91 chr5 30721117 30721360 + 0.833333 NA Intergenic Intergenic -472448 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 138.333-26 chr13 65842931 65843168 + 0.833333 NA Intergenic Intergenic -22998 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 252.167-15 chr7 53178246 53178757 + 0.833333 NA Intergenic L1ME1|LINE|L1 142868 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 129.167-38 chr2 32005212 32005492 + 0.833333 NA intron (NR_126034, intron 1 of 6) L1ME3A|LINE|L1 5312 NM_001137602 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 266.833-9 chr9 100441427 100441791 + 0.833333 NA promoter-TSS (NM_001198812) promoter-TSS (NM_001198812) -297 NM_001198812 100526694 Hs.598100 NM_001198812 MSANTD3-TMEFF1 C9orf2|C9orf3-TMEFF1|C9orf30-TMEFF1|H7365|TMEFF1|TR-1 MSANTD3-TMEFF1 readthrough protein-coding 128.167-62 chr5 11416900 11417153 + 0.833333 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 171891 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 258.667-13 chr2 126331645 126332161 + 0.833333 NA Intergenic L1MB8|LINE|L1 -213918 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 164.167-11 chr11 69897398 69897662 + 0.833333 NA Intergenic L1ME1|LINE|L1 -78114 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 295.167-11 chr7 103028867 103029363 + 0.833333 NA intron (NR_105043, intron 4 of 20) intron (NR_105043, intron 4 of 20) 45453 NM_145032 222235 Hs.660029 NM_145032 ENSG00000161040 FBXL13 DRC6|Fbl13 F-box and leucine rich repeat protein 13 protein-coding 130-45 chr18 9143967 9144148 + 0.833333 NA intron (NM_001204056, intron 1 of 11) intron (NM_001204056, intron 1 of 11) 6494 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 183.667-39 chr2 134780466 134780844 + 0.833333 NA Intergenic AluSx|SINE|Alu -57961 NM_001307983 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 266-8 chr15 81624582 81625294 + 0.833333 NA Intergenic AluJb|SINE|Alu -250725 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 148.5-34 chr2 28505124 28505452 + 0.833333 NA intron (NM_001170585, intron 1 of 56) intron (NM_001170585, intron 1 of 56) 9217 NM_001170585 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 145.667-2 chr1 70790049 70790289 + 0.833333 NA Intergenic Intergenic 83716 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 185.5-36 chr4 104236961 104237342 + 0.833333 NA Intergenic Intergenic -253814 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 183.333-43 chr4 101945059 101945512 + 0.833333 NA intron (NM_017935, intron 7 of 16) intron (NM_017935, intron 7 of 16) 131443 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 194.333-27 chr4 30512675 30513124 + 0.833333 NA Intergenic MIR|SINE|MIR -207470 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 128.5-28 chr16 68296619 68296898 + 0.833333 NA exon (NM_001076785, exon 11 of 12) exon (NM_001076785, exon 11 of 12) 14188 NM_032178 84138 Hs.729520 NM_032178 ENSG00000103061 SLC7A6OS - solute carrier family 7 member 6 opposite strand protein-coding 139.667-16 chr11 19223948 19224259 + 0.833333 NA TTS (NM_001256371) TTS (NM_001256371) 16842 NM_024680 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 160.167-9 chr11 60878892 60879174 + 0.833333 NA Intergenic L1ME3C|LINE|L1 11491 NM_207341 22917 Hs.172130 NM_207341 ENSG00000149506 ZP1 HEL163|OOMD|OOMD1 zona pellucida glycoprotein 1 protein-coding 235.833-9 chr17 72678081 72678489 + 0.833333 NA intron (NM_001352692, intron 7 of 9) Tigger16a|DNA|TcMar-Tigger -37813 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 138.333-80 chr4 36516663 36516981 + 0.833333 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) -90394 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 145-49 chr2 189642618 189642853 + 0.833333 NA Intergenic Intergenic -18664 NM_001353493 110599588 Hs.101364 NM_001353493 ENSG00000286053 ASDURF ASNSD1|ASNSD1-SEP|NS3TP1 ASNSD1 upstream reading frame protein-coding 145.333-89 chr8 117416740 117416986 + 0.833333 NA Intergenic Intergenic -103850 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 116.5-73 chr5 161295659 161295811 + 0.833333 NA intron (NM_000813, intron 9 of 9) Mam_R4|LINE|Dong-R4 252389 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 198.5-38 chr6 37627091 37627411 + 0.833333 NA Intergenic Intergenic 70632 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 151.833-23 chr17 53142117 53142347 + 0.833333 NA Intergenic Intergenic 156727 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 115.5-82 chr5 135114034 135114378 + 0.833333 NA intron (NR_161235, intron 2 of 5) intron (NR_161235, intron 2 of 5) -74159 NR_105050 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 Epist C5orf66 antisense RNA 1 ncRNA 198.667-38 chr4 69809361 69809722 + 0.833333 NA Intergenic Intergenic -48921 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 138.667-101 chr8 41274539 41274906 + 0.833333 NA intron (NM_003012, intron 2 of 2) HAL1|LINE|L1 -3579 NR_049801 100847068 NR_049801 ENSG00000263372 MIR548AO - microRNA 548ao ncRNA 175.333-51 chr5 85197918 85198199 + 0.833333 NA Intergenic L1MA4|LINE|L1 -813178 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 204.833-32 chr8 75260981 75261447 + 0.833333 NA intron (NR_103849, intron 1 of 1) L1PBa1|LINE|L1 17267 NR_103850 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 134.833-6 chr1 196974804 196975150 + 0.833333 NA Intergenic Intergenic -2560 NM_030787 81494 Hs.282594 NM_030787 ENSG00000134389 CFHR5 CFHL5|CFHR5D|FHR-5|FHR5 complement factor H related 5 protein-coding 146.833-49 chr5 38061354 38061678 + 0.833333 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 35819 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 167.667-94 chrX 98759069 98759364 + 0.833333 NA Intergenic Intergenic -1194681 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 222-22 chr20 23973880 23974179 + 0.833333 NA Intergenic Intergenic 12846 NM_178312 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 288-13 chr6 52011672 52012184 + 0.833333 NA intron (NM_138694, intron 34 of 66) L3|LINE|CR1 75685 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 275.167-6 chr17 64544459 64545164 + 0.833333 NA 3' UTR (NM_022739, exon 19 of 19) 3' UTR (NM_022739, exon 19 of 19) 37834 NM_001316990 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 118.5-81 chr5 54272586 54272861 + 0.833333 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 37850 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 176-50 chr8 105051332 105051615 + 0.833333 NA Intergenic Intergenic -266965 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 118-27 chr12 114855160 114855351 + 0.833333 NA Intergenic MER21B|LTR|ERVL -171080 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 138-14 chr10 57932388 57932630 + 0.833333 NA Intergenic Intergenic 335385 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 151.167-2 chr1 26380553 26380831 + 0.833333 NA Intergenic L1MB5|LINE|L1 -7898 NM_001307925 257101 Hs.353208 NM_173574 ENSG00000176083 ZNF683 Hobit zinc finger protein 683 protein-coding 125.833-49 chr20 6823564 6823774 + 0.833333 NA Intergenic AluJr|SINE|Alu 55983 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 122.333-51 chr2 101541578 101541818 + 0.833333 NA Intergenic L1ME1|LINE|L1 -66586 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 298.333-10 chr5 12998555 12999014 + 0.833333 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 34102 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 114.333-98 chr4 125521813 125522024 + 0.833333 NA Intergenic L1M5|LINE|L1 14659 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 174.167-40 chr8 68225111 68225423 + 0.833333 NA intron (NM_024870, intron 39 of 39) intron (NM_024870, intron 39 of 39) -105106 NM_001349478 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 237.333-14 chr2 18990166 18990482 + 0.833333 NA intron (NR_135287, intron 3 of 3) intron (NR_135287, intron 3 of 3) 36647 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 299.333-2 chr16 5735113 5735794 + 0.833333 NA Intergenic Intergenic 102986 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 189.167-27 chr2 179146315 179146619 + 0.833333 NA intron (NM_178123, intron 7 of 17) intron (NM_178123, intron 7 of 17) -96330 NM_001316745 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 216.833-20 chr4 104537292 104537849 + 0.833333 NA intron (NR_125926, intron 1 of 9) intron (NR_125926, intron 1 of 9) -42676 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 117.333-110 chr8 121387881 121388043 + 0.833333 NA Intergenic Intergenic -251384 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 189.667-4 chr10 32256899 32257202 + 0.833333 NA Intergenic Intergenic 90108 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 125.333-33 chr12 33288714 33288921 + 0.833333 NA Intergenic L2a|LINE|L2 151002 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 153.667-35 chr2 41527140 41527475 + 0.833333 NA Intergenic Intergenic -350248 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 133.667-17 chr10 101439802 101440061 + 0.833333 NA intron (NM_001256856, intron 2 of 13) intron (NM_001256856, intron 2 of 13) 85766 NM_033637 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 128.333-12 chr1 217311925 217312234 + 0.833333 NA Intergenic ERVL-B4-int|LTR|ERVL -174377 NM_001243511 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 223.5-14 chr2 59271571 59271936 + 0.833333 NA intron (NR_110219, intron 2 of 2) MIRb|SINE|MIR 54045 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 192.167-25 chr20 46610896 46611320 + 0.833333 NA intron (NM_001193340, intron 3 of 12) L1M5|LINE|L1 40351 NM_022829 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 190.167-21 chr18 3954560 3954866 + 0.833333 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -7640 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 223.833-17 chr2 202487279 202487733 + 0.833333 NA intron (NM_001204, intron 3 of 12) intron (NM_001204, intron 3 of 12) 111179 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 146.333-17 chr11 45690710 45691077 + 0.833333 NA TTS (NR_106976) TTS (NR_106976) 883 NR_106976 102465691 NR_106976 ENSG00000276639 MIR7154 hsa-mir-7154 microRNA 7154 ncRNA 136.5-31 chr14 27876824 27877007 + 0.833333 NA Intergenic L1M4c|LINE|L1 -203694 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 219.833-4 chr10 115388447 115388752 + 0.833333 NA intron (NM_207303, intron 19 of 28) L1ME2|LINE|L1 295234 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 124.833-85 chr7 120245227 120245457 + 0.833333 NA Intergenic L2a|LINE|L2 -27833 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 165.833-52 chr6 70537330 70537693 + 0.833333 NA intron (NM_020819, intron 18 of 20) intron (NM_020819, intron 18 of 20) -29419 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 185.667-9 chr11 128187873 128188266 + 0.833333 NA Intergenic Intergenic -20697 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 225.167-13 chr2 198941461 198941882 + 0.833333 NA Intergenic Intergenic 516268 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 195.5-3 chr1 222823443 222823807 + 0.833333 NA intron (NM_032890, intron 1 of 9) L1PB4|LINE|L1 8586 NM_032890 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 205.167-17 chr14 81690783 81691173 + 0.833333 NA Intergenic LTR16|LTR|ERVL 52160 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 175.333-50 chr5 85026287 85026748 + 0.833333 NA Intergenic Intergenic -641637 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 156.333-80 chr6 119821709 119822014 + 0.833333 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) -193318 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 123-14 chr12 14068500 14068871 + 0.833333 NA Intergenic L1MD2|LINE|L1 -88329 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 188.667-54 chr6 55522299 55522663 + 0.833333 NA intron (NM_001287746, intron 4 of 9) intron (NM_001287746, intron 4 of 9) 56733 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 252-18 chr8 126060604 126061096 + 0.833333 NA Intergenic L1MB5|LINE|L1 -109653 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 272.333-22 chr9 75105352 75105841 + 0.833333 NA intron (NM_012383, intron 1 of 9) intron (NM_012383, intron 1 of 9) 17082 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 178.667-24 chr2 39951589 39951826 + 0.833333 NA intron (NR_038441, intron 2 of 4) L1MC4a|LINE|L1 34073 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 231.5-2 chr10 72927115 72927589 + 0.833333 NA intron (NM_152635, intron 7 of 8) AluSz6|SINE|Alu 27454 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 140.5-21 chr13 34963913 34964167 + 0.833333 NA intron (NM_015678, intron 1 of 57) MIR|SINE|MIR 21753 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 119.167-69 chr4 55820595 55820834 + 0.833333 NA intron (NM_001351574, intron 1 of 2) intron (NM_001351574, intron 1 of 2) 711 NM_001351574 644145 Hs.570825 NM_001351574 ENSG00000250821 EXOC1L - exocyst complex component 1 like protein-coding 153-17 chr14 50435002 50435251 + 0.833333 NA intron (NM_198794, intron 25 of 31) intron (NM_198794, intron 25 of 31) -37828 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 119.333-99 chr7 26052408 26052573 + 0.833333 NA Intergenic L1MC2|LINE|L1 -99708 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 178.5-46 chr2 194514891 194515157 + 0.833333 NA Intergenic Intergenic 170755 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 188.333-37 chr3 113230576 113230937 + 0.833333 NA intron (NM_001301861, intron 2 of 19) intron (NM_001301861, intron 2 of 19) 18640 NM_001301861 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 121.667-68 chr4 15419892 15420058 + 0.833333 NA intron (NM_001135171, intron 1 of 2) L2|LINE|L2 7939 NR_125911 101929095 Hs.656908 NR_125911 ENSG00000249252 LOC101929095 - uncharacterized LOC101929095 ncRNA 228.5-13 chr2 48659183 48659533 + 0.833333 NA intron (NM_172311, intron 8 of 10) L1MB3|LINE|L1 41502 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 131.667-135 chr9 109878732 109878921 + 0.833333 NA intron (NM_053016, intron 2 of 6) AluSp|SINE|Alu 98628 NM_053016 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 185.5-35 chr4 102818064 102818316 + 0.833333 NA intron (NM_181893, intron 1 of 6) intron (NM_181893, intron 1 of 6) 7670 NM_001300795 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 269-3 chr12 105118125 105118682 + 0.833333 NA intron (NM_001293640, intron 6 of 32) intron (NM_001293640, intron 6 of 32) 10672 NM_015275 23325 Hs.12144 NM_015275 ENSG00000136051 WASHC4 KIAA1033|MRT43|SWIP WASH complex subunit 4 protein-coding 223.333-8 chr10 107952550 107953206 + 0.833333 NA intron (NR_125760, intron 4 of 4) intron (NR_125760, intron 4 of 4) 116415 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 118.5-11 chr1 188167926 188168184 + 0.833333 NA Intergenic Intergenic 724427 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 135.167-39 chr17 28439108 28439434 + 0.833333 NA Intergenic L1MB3|LINE|L1 -33059 NM_080669 113235 Hs.446689 NM_080669 ENSG00000076351 SLC46A1 G21|HCP1|PCFT solute carrier family 46 member 1 protein-coding 123-27 chr15 90449277 90449452 + 0.833333 NA intron (NM_003870, intron 10 of 37) OldhAT1|DNA|hAT-Ac 61122 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 182.833-38 chr4 101214832 101215086 + 0.833333 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) 25913 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 136.167-9 chr1 187323064 187323483 + 0.833333 NA intron (NR_126347, intron 2 of 3) intron (NR_126347, intron 2 of 3) -120355 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 142.667-43 chr2 35703271 35703541 + 0.833333 NA Intergenic L1M5|LINE|L1 232001 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 192-35 chr4 187452538 187452905 + 0.833333 NA intron (NR_038931, intron 1 of 4) intron (NR_038931, intron 1 of 4) 52892 NR_038931 339975 Hs.639361 NR_038931 LOC339975 - uncharacterized LOC339975 ncRNA 246.167-19 chr3 76687605 76688006 + 0.833333 NA Intergenic Intergenic -352294 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 218.167-7 chr11 15217055 15217351 + 0.833333 NA intron (NM_001042536, intron 7 of 12) THE1C|LTR|ERVL-MaLR 68101 NM_001278315 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 122.667-47 chr20 2676694 2677117 + 0.833333 NA Intergenic AluSx1|SINE|Alu -12682 NM_001258384 3420 Hs.436405 NM_006899 ENSG00000101365 IDH3B RP46 isocitrate dehydrogenase (NAD(+)) 3 beta protein-coding 156.833-38 chr3 192456595 192456925 + 0.833333 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -47711 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 287.667-7 chr2 78840686 78841178 + 0.833333 NA Intergenic AluY|SINE|Alu -184770 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 157.167-2 chr1 47869385 47869716 + 0.833333 NA intron (NM_001194986, intron 2 of 6) intron (NM_001194986, intron 2 of 6) 127835 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 117-4 chr1 95721193 95721393 + 0.833333 NA Intergenic Intergenic 211177 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 181-55 chr5 140553114 140553331 + 0.833333 NA intron (NM_001035235, intron 2 of 4) FLAM_C|SINE|Alu 4234 NR_045587 10011 Hs.653135 NM_001035235 ENSG00000213523 SRA1 SRA|SRAP|STRAA1|pp7684 steroid receptor RNA activator 1 protein-coding 230-24 chr5 36616504 36616980 + 0.833333 NA intron (NM_001289939, intron 2 of 8) intron (NM_001289939, intron 2 of 8) 10136 NM_001166695 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 177.667-55 chr5 15495018 15495319 + 0.833333 NA Intergenic Intergenic -5012 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 199.5-37 chr6 49717830 49718207 + 0.833333 NA Intergenic PABL_A-int|LTR|ERV1 -4428 NM_001261822 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 190.667-47 chr5 119593267 119593495 + 0.833333 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -36177 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 113.167-69 chr6 129396637 129396870 + 0.833333 NA intron (NM_000426, intron 37 of 64) intron (NM_000426, intron 37 of 64) 313424 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 172.333-39 chr2 124033570 124033897 + 0.833333 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 8446 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 190.5-58 chr9 101556229 101556507 + 0.833333 NA intron (NM_019592, intron 15 of 19) L1M5|LINE|L1 22515 NM_019592 56254 Hs.729085 NM_019592 ENSG00000155827 RNF20 BRE1|BRE1A|hBRE1 ring finger protein 20 protein-coding 124.333-27 chr14 43245466 43245788 + 0.833333 NA Intergenic L1PB|LINE|L1 1261656 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 156.667-9 chr1 234337413 234337642 + 0.833333 NA Intergenic L1MB4|LINE|L1 31060 NR_039818 100616380 NR_039818 ENSG00000264377 MIR4671 - microRNA 4671 ncRNA 145.167-18 chr12 43296289 43296654 + 0.833333 NA Intergenic Intergenic 141156 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 213.833-12 chr15 94519721 94520212 + 0.833333 NA Intergenic Intergenic 164036 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 325.667-2 chr14 82817286 82817822 + 0.833333 NA Intergenic Intergenic 174922 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 134.333-86 chr4 120147432 120147687 + 0.833333 NA Intergenic Intergenic -80711 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 213.5-16 chr2 52377132 52377538 + 0.833333 NA intron (NR_135239, intron 2 of 2) L1PA17|LINE|L1 6687 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 182-51 chr7 15204233 15204512 + 0.833333 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) -229514 NM_001350722 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 144.833-52 chr3 138587494 138587824 + 0.833333 NA intron (NM_001320598, intron 2 of 17) AluJr|SINE|Alu 4297 NM_001320600 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 141.833-29 chr4 80942226 80942473 + 0.833333 NA intron (NM_152770, intron 4 of 5) intron (NM_152770, intron 4 of 5) -88359 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 175.167-37 chr4 114243210 114243504 + 0.833333 NA Intergenic L1PB4|LINE|L1 -263710 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 167.667-77 chr6 49246739 49247292 + 0.833333 NA Intergenic L1PA15|LINE|L1 216238 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 229.666-4 chr2 213450685 213451205 + 0.833333 NA intron (NR_047660, intron 8 of 14) hAT-N1_Mam|DNA|hAT-Tip100? 166481 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 194.667-26 chr2 54832767 54833088 + 0.833333 NA intron (NM_001039753, intron 6 of 40) intron (NM_001039753, intron 6 of 40) 107915 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 309.167 chr21 18973632 18974064 + 0.833333 NA Intergenic L1PA11|LINE|L1 -214036 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 130.5-55 chr3 164969418 164969649 + 0.833333 NA Intergenic Intergenic 108963 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 144.5-37 chr17 61087535 61087875 + 0.833333 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 279999 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 234.833-22 chr7 80263882 80264250 + 0.833333 NA Intergenic Tigger17a|DNA|TcMar-Tigger 110373 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 242.833-13 chr7 85248594 85248904 + 0.833333 NA Intergenic L1MC1|LINE|L1 -126818 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 167.833-52 chr6 111775502 111775786 + 0.833333 NA intron (NM_153047, intron 3 of 13) intron (NM_153047, intron 3 of 13) -15727 NM_001370529 2534 Hs.390567 NM_002037 ENSG00000010810 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 142.167-83 chr8 127629131 127629361 + 0.833333 NA Intergenic AluSq2|SINE|Alu 104721 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 151.667-39 chr2 76271367 76271760 + 0.833333 NA Intergenic MLT1L|LTR|ERVL-MaLR -560648 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 134.5-50 chr21 21273659 21273935 + 0.833333 NA intron (NM_001352592, intron 2 of 18) (TTTTTA)n|Simple_repeat|Simple_repeat 126635 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 204.333-32 chr3 4323943 4324427 + 0.833333 NA Intergenic Zaphod|DNA|hAT-Tip100 20881 NM_006515 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 185.167-46 chrX 96580932 96581450 + 0.833333 NA Intergenic AluYf1|SINE|Alu -103472 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 172.667-29 chr16 7437805 7438208 + 0.833333 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 105161 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 114.5-100 chr9 36682592 36682756 + 0.833333 NA Intergenic L1ME1|LINE|L1 109779 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 151-57 chr4 106726820 106727046 + 0.833333 NA Intergenic L1M4|LINE|L1 293309 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 150-29 chr16 7024104 7024336 + 0.833333 NA intron (NM_001142334, intron 1 of 13) MER136|DNA|DNA 250411 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 196.167-23 chr4 21224201 21224465 + 0.833333 NA intron (NM_147182, intron 2 of 8) MLT1A|LTR|ERVL-MaLR 79573 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 219.333-5 chr10 24762176 24762635 + 0.833333 NA Intergenic Intergenic -38518 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 323.333-5 chr2 103320052 103320979 + 0.833333 NA Intergenic Intergenic -336086 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 141.333-45 chr2 10290949 10291149 + 0.833333 NA Intergenic L1ME3Cz|LINE|L1 -11855 NM_002149 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 128.5-89 chrX 87663734 87663951 + 0.833333 NA intron (NM_057162, intron 9 of 10) intron (NM_057162, intron 9 of 10) 146040 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 115.667-63 chr20 5556644 5556790 + 0.833333 NA intron (NM_019593, intron 19 of 19) intron (NM_019593, intron 19 of 19) -46715 NR_109860 101929207 Hs.516871 NR_109860 ENSG00000225640 LINC01729 - long intergenic non-protein coding RNA 1729 ncRNA 116-36 chr17 28964714 28964870 + 0.833333 NA intron (NM_001290202, intron 4 of 16) AluSp|SINE|Alu -13274 NM_001033561 57649 Hs.444173 NM_020889 ENSG00000109118 PHF12 PF1 PHD finger protein 12 protein-coding 115.167-107 chr8 122668722 122669077 + 0.833333 NA Intergenic Intergenic 25207 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 193.833-22 chr2 30392220 30392674 + 0.833333 NA Intergenic Intergenic 45801 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 176.667-67 chr6 71910305 71910627 + 0.833333 NA intron (NM_001350412, intron 1 of 2) intron (NM_001350412, intron 1 of 2) 23763 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 139.333-8 chr10 51226653 51226906 + 0.833333 NA intron (NM_001098512, intron 2 of 17) L3|LINE|CR1 -72794 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 134.333-4 chr1 167577349 167577582 + 0.833333 NA Intergenic L1MB5|LINE|L1 -23703 NM_003851 8804 Hs.5710 NM_003851 ENSG00000143162 CREG1 CREG cellular repressor of E1A stimulated genes 1 protein-coding 229.833-18 chr5 151999197 151999833 + 0.833333 NA intron (NR_109876, intron 1 of 2) L1M6|LINE|L1 40617 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 200.833-7 chr12 127004854 127005260 + 0.833333 NA intron (NR_104646, intron 2 of 6) MER110|LTR|ERV1 55340 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 204.5-26 chr4 91767396 91767872 + 0.833333 NA Intergenic L1MA10|LINE|L1 509668 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 264-18 chr7 31613292 31613871 + 0.833333 NA intron (NM_194300, intron 8 of 12) intron (NM_194300, intron 8 of 12) 60579 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 236.334-5 chr18 1075592 1076304 + 0.833333 NA Intergenic Intergenic -147955 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 128.333-33 chr14 44068469 44068778 + 0.833333 NA Intergenic Intergenic 438660 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 136.833-29 chr18 44493323 44493635 + 0.833333 NA intron (NR_110792, intron 2 of 4) THE1B|LTR|ERVL-MaLR 38218 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 141.167-44 chr2 190605047 190605309 + 0.833333 NA Intergenic Intergenic -43717 NM_001321313 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 242-13 chr3 169936090 169936478 + 0.833333 NA intron (NM_001304366, intron 7 of 8) intron (NM_001304366, intron 7 of 8) 24712 NM_001304366 344658 Hs.439922 NM_182610 ENSG00000187033 SAMD7 - sterile alpha motif domain containing 7 protein-coding 164.167-26 chr17 63099278 63099657 + 0.833333 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 133232 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 120.333-86 chr4 49711622 49711873 + 0.833333 NA Intergenic SAR|Satellite|Satellite 725105 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 181-3 chr1 152844746 152845342 + 0.833333 NA Intergenic Intergenic 2188 NM_001128600 448835 Hs.62927 NM_001128600 ENSG00000235942 LCE6A C1orf44 late cornified envelope 6A protein-coding 214-43 chr6 54671171 54671658 + 0.833333 NA Intergenic Intergenic -175357 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 159.333-54 chr4 62060877 62061445 + 0.833333 NA intron (NM_001371343, intron 23 of 23) intron (NM_001371343, intron 23 of 23) 100604 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 275.667-18 chr4 30628482 30629452 + 0.833333 NA Intergenic Intergenic -91402 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 120.5-41 chr16 64664455 64664877 + 0.833333 NA Intergenic Intergenic 457397 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 226.333-22 chr22 26874809 26875376 + 0.833333 NA intron (NR_146604, intron 3 of 5) L1MEg2|LINE|L1 14881 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 149.5-5 chr1 161334673 161335089 + 0.833333 NA intron (NM_003001, intron 3 of 5) intron (NM_003001, intron 3 of 5) 20500 NR_103459 6391 Hs.444472 NM_003001 ENSG00000143252 SDHC CYB560|CYBL|PGL3|QPS1|SDH3 succinate dehydrogenase complex subunit C protein-coding 275.5-15 chr9 123937619 123938146 + 0.833333 NA Intergenic AluSx|SINE|Alu -7744 NM_020946 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 197.5-11 chr10 74297874 74298219 + 0.833333 NA intron (NM_001369124, intron 3 of 9) Cheshire|DNA|hAT-Charlie 121283 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 254-12 chr20 33578511 33578969 + 0.833333 NA intron (NM_005093, intron 2 of 11) intron (NM_005093, intron 2 of 11) 16375 NM_005093 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 218.333-9 chr11 70011507 70011963 + 0.833333 NA Intergenic Intergenic 52189 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 135.667-7 chr1 197483820 197484132 + 0.833333 NA Intergenic Intergenic 215724 NM_201253 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 116.833-30 chr2 207202405 207202660 + 0.833333 NA intron (NR_110283, intron 3 of 3) intron (NR_110283, intron 3 of 3) -35286 NM_001270943 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 122.833-17 chr12 3184029 3184315 + 0.833333 NA intron (NM_006675, intron 2 of 8) AluJb|SINE|Alu 106793 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 164.333-40 chr3 26064939 26065316 + 0.833333 NA Intergenic Intergenic -191432 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 296-11 chr20 1667752 1668401 + 0.833333 NA Intergenic L1MCa|LINE|L1 -10297 NM_001039508 55423 Hs.590883 NM_018556 ENSG00000089012 SIRPG CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1 signal regulatory protein gamma protein-coding 135-92 chr8 126746465 126746893 + 0.833333 NA Intergenic L1MA8|LINE|L1 -188201 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 210.5-45 chr7 4438739 4439007 + 0.833333 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat -243422 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 242.333-7 chr2 35801693 35802134 + 0.833333 NA Intergenic Intergenic 330508 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 250.5-3 chr14 19927325 19927775 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL 6943 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 118.667-38 chr16 79396972 79397151 + 0.833333 NA Intergenic MIRb|SINE|MIR 203676 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 128.5-46 chr20 51654636 51654892 + 0.833333 NA intron (NM_006045, intron 14 of 27) intron (NM_006045, intron 14 of 27) -91925 NM_001258294 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 164-36 chr2 180608142 180608367 + 0.833333 NA Intergenic Intergenic -83850 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 144.167-54 chr4 54106789 54106989 + 0.833333 NA Intergenic Intergenic 6726 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 194.333-9 chr13 110201852 110202309 + 0.833333 NA intron (NM_001845, intron 18 of 51) intron (NM_001845, intron 18 of 51) 80378 NR_148221 105370361 Hs.134728 NR_148221 LOC105370361 - uncharacterized LOC105370361 ncRNA 149.5-66 chr8 117443143 117443368 + 0.833333 NA Intergenic Intergenic -77458 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 128.5-57 chr4 90778704 90778958 + 0.833333 NA intron (NM_001145065, intron 7 of 10) intron (NM_001145065, intron 7 of 10) 543800 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 162.5-78 chr9 31767696 31767998 + 0.833333 NA Intergenic L1ME4b|LINE|L1 -386357 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 120-108 chr8 125083155 125083343 + 0.833333 NA exon (NM_014846, exon 3 of 29) exon (NM_014846, exon 3 of 29) 8543 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 167.667-38 chr18 8296924 8297174 + 0.833333 NA intron (NM_002845, intron 18 of 30) intron (NM_002845, intron 18 of 30) 69985 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 351.167-2 chr1 163748970 163749455 + 0.833333 NA Intergenic Intergenic -326021 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 178-52 chr6 63293165 63293525 + 0.833333 NA intron (NM_001143940, intron 2 of 4) intron (NM_001143940, intron 2 of 4) 26632 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 133.333-122 chr8 119725225 119725549 + 0.833333 NA Intergenic AluJr|SINE|Alu -51997 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 257.833 chr11 83840877 83841502 + 0.833333 NA intron (NM_001142699, intron 16 of 27) intron (NM_001142699, intron 16 of 27) -158764 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 170.5-43 chr3 18582867 18583148 + 0.833333 NA Intergenic L1MD3|LINE|L1 -137415 NM_001322872 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 172.167-39 chr5 38506364 38506570 + 0.833333 NA intron (NM_001127671, intron 8 of 19) intron (NM_001127671, intron 8 of 19) 50179 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 235.167-30 chr8 103882310 103882869 + 0.833333 NA intron (NR_145711, intron 1 of 21) intron (NR_145711, intron 1 of 21) 63369 NM_001348502 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 270.833-3 chr10 66466810 66467674 + 0.833333 NA intron (NM_001127384, intron 11 of 17) L2b|LINE|L2 -458794 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 147.333-43 chr2 125003419 125003713 + 0.833333 NA Intergenic Intergenic 978279 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 196.667-25 chr2 4672750 4673239 + 0.833333 NA Intergenic LTR12F|LTR|ERV1 -16772 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 190.333-34 chr2 113906082 113906447 + 0.833333 NA intron (NM_001277140, intron 1 of 11) L1MB3|LINE|L1 -15272 NR_110174 101060091 Hs.741753 NR_110174 ACTR3-AS1 - ACTR3 antisense RNA 1 ncRNA 171.167-58 chr8 103322760 103323001 + 0.833333 NA intron (NM_003506, intron 3 of 6) L1ME3Cz|LINE|L1 13902 NR_145795 109623480 NR_145795 SNORD173 - small nucleolar RNA, C/D box 173 snoRNA 181.833-56 chr9 99142080 99142470 + 0.833333 NA intron (NM_004612, intron 4 of 8) MIRc|SINE|MIR 37162 NM_004612 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 163-60 chr8 49461666 49461952 + 0.833333 NA Intergenic Intergenic 50371 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 153-49 chr7 26351768 26352041 + 0.833333 NA intron (NM_001318199, intron 2 of 6) AluY|SINE|Alu -8980 NM_001199837 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 118.833-71 chr8 124615978 124616239 + 0.833333 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 76985 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 140.167-39 chr21 19724684 19724929 + 0.833333 NA Intergenic Intergenic 174949 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 258.333-15 chr15 95344687 95345018 + 0.833333 NA Intergenic Intergenic -17752 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 113.667-59 chr2 22513024 22513249 + 0.833333 NA Intergenic Intergenic -23343 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 217.833-21 chr7 84623429 84623841 + 0.833333 NA Intergenic Intergenic 91159 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 129.833-15 chr12 49195136 49195459 + 0.833333 NA Intergenic AluJo|SINE|Alu -5973 NM_001270399 7846 Hs.654422 NM_006009 ENSG00000167552 TUBA1A B-ALPHA-1|LIS3|TUBA3 tubulin alpha 1a protein-coding 136.667-14 chr11 64804161 64804442 + 0.833333 NA 3' UTR (NM_130801, exon 10 of 10) 3' UTR (NM_130801, exon 10 of 10) -1087 NM_004579 5871 Hs.534341 NM_004579 ENSG00000168067 MAP4K2 BL44|GCK|RAB8IP mitogen-activated protein kinase kinase kinase kinase 2 protein-coding 214.333-37 chr5 60433233 60433605 + 0.833333 NA intron (NM_001364599, intron 1 of 16) L1PA15|LINE|L1 -54294 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 123.167-39 chr17 57443638 57443812 + 0.833333 NA intron (NM_001322250, intron 6 of 13) MIR|SINE|MIR 79872 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 125.333-108 chr6 156189115 156189380 + 0.833333 NA Intergenic Intergenic -189503 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 141.667-42 chr18 43041218 43041519 + 0.833333 NA intron (NM_001272077, intron 1 of 5) intron (NM_001272077, intron 1 of 5) 74317 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 113.5-22 chr11 98083298 98083538 + 0.833333 NA Intergenic L1M5|LINE|L1 -937531 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 170.167-53 chr8 78292663 78292979 + 0.833333 NA Intergenic FLAM_C|SINE|Alu -223519 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 359.334 chr16 79611572 79612404 + 0.833333 NA Intergenic MIR|SINE|MIR -11251 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 168.5-50 chr5 38286328 38286713 + 0.833333 NA intron (NR_046219, intron 1 of 3) intron (NR_046219, intron 1 of 3) 4466 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 128.833-70 chr5 83670388 83670634 + 0.833333 NA intron (NM_001884, intron 2 of 4) intron (NM_001884, intron 2 of 4) 50344 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 148.833-65 chr9 26784162 26784471 + 0.833333 NA Intergenic AluSg|SINE|Alu 108486 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 278-7 chr16 65369197 65369906 + 0.833333 NA intron (NR_027755, intron 2 of 8) AluJb|SINE|Alu -192978 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 185.667-47 chr6 99798983 99799350 + 0.833333 NA Intergenic Intergenic 192392 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 125.5-22 chr14 45395314 45395738 + 0.833333 NA Intergenic L1MA2|LINE|L1 -142324 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 200.167-16 chr14 61970761 61971310 + 0.833333 NA intron (NM_001367657, intron 3 of 6) intron (NM_001367657, intron 3 of 6) 43340 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 160.833-19 chr12 75392403 75392718 + 0.833333 NA intron (NM_001270396, intron 1 of 5) intron (NM_001270396, intron 1 of 5) 1471 NM_001270396 144321 Hs.406728 NM_152436 ENSG00000180481 GLIPR1L2 - GLIPR1 like 2 protein-coding 145.5-24 chr15 56429434 56429710 + 0.833333 NA intron (NM_018365, intron 9 of 9) intron (NM_018365, intron 9 of 9) 35565 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 174.5-29 chr4 43660964 43661292 + 0.833333 NA Intergenic Intergenic -168585 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 172.667-63 chr4 105794668 105795054 + 0.833333 NA intron (NM_001370181, intron 5 of 11) (TATC)n|Simple_repeat|Simple_repeat 32311 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 171.667-62 chr5 32863751 32864367 + 0.833333 NA Intergenic Intergenic -83384 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 151.333-52 chr2 224598868 224599113 + 0.833333 NA Intergenic Intergenic -13593 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 216.167-19 chr3 166652885 166653223 + 0.833333 NA Intergenic MSTB|LTR|ERVL-MaLR -245629 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 161-73 chr8 40366847 40367152 + 0.833333 NA Intergenic L1ME3G|LINE|L1 -23636 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 125.667-117 chr8 60148931 60149147 + 0.833333 NA Intergenic Intergenic 132361 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 193.667-45 chr6 76399295 76399714 + 0.833333 NA Intergenic L2a|LINE|L2 194119 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 120.5-89 chr8 125059486 125059896 + 0.833333 NA intron (NM_014846, intron 12 of 28) intron (NM_014846, intron 12 of 28) 32101 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 318.333 chr1 49991760 49992473 + 0.833333 NA intron (NM_001323575, intron 1 of 12) AluY|SINE|Alu 31838 NM_001323573 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 168.167-38 chr3 75885453 75885702 + 0.833333 NA Intergenic Intergenic -100028 NM_001290210 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 137.833-9 chr11 82741082 82741420 + 0.833333 NA Intergenic Intergenic -7387 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 237-14 chr3 112065459 112065911 + 0.833333 NA intron (NR_026734, intron 11 of 16) intron (NR_026734, intron 11 of 16) -20650 NM_001171747 79669 Hs.434247 NM_024616 ENSG00000114529 C3orf52 TTMP chromosome 3 open reading frame 52 protein-coding 192.167-3 chr10 18955798 18956106 + 0.833333 NA Intergenic MER57A-int|LTR|ERV1 -92849 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 161.5-27 chr2 168253250 168253536 + 0.833333 NA Intergenic (GTTT)n|Simple_repeat|Simple_repeat -5798 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 221-37 chr8 110584631 110584980 + 0.833333 NA Intergenic Intergenic 442628 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 144.667-74 chr4 120614843 120615338 + 0.833333 NA Intergenic Intergenic 307776 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 219.5-36 chr6 64599986 64600542 + 0.833333 NA intron (NM_001292009, intron 24 of 43) intron (NM_001292009, intron 24 of 43) -701154 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 232.333-37 chr8 115990000 115990376 + 0.833333 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) -321213 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 170.667-76 chr8 101706456 101706813 + 0.833333 NA intron (NM_001040624, intron 6 of 7) MLT1C|LTR|ERVL-MaLR 84335 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 159.5-46 chr6 115428386 115428681 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger 215302 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 193.333 chr1 65501537 65501864 + 0.833333 NA intron (NM_001003679, intron 2 of 19) L2|LINE|L2 -23951 NM_001198687 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 200.167-37 chr4 84678583 84679010 + 0.833333 NA intron (NM_014991, intron 65 of 67) intron (NM_014991, intron 65 of 67) 95669 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 132.833-39 chr20 10890624 10890878 + 0.833333 NA intron (NR_109866, intron 5 of 6) MLT1A1|LTR|ERVL-MaLR 18521 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 124.167-84 chr7 92339889 92340063 + 0.833333 NA intron (NM_019004, intron 5 of 19) intron (NM_019004, intron 5 of 19) -93876 NM_001350688 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 141.833-21 chr2 180131780 180132235 + 0.833333 NA Intergenic Intergenic -124710 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 172.833-55 chr9 35039535 35039818 + 0.833333 NA Intergenic L2c|LINE|L2 -1419 NM_001040411 138724 Hs.148250 NM_203299 ENSG00000174038 C9orf131 - chromosome 9 open reading frame 131 protein-coding 180.667-80 chr9 89240028 89240398 + 0.833333 NA Intergenic Intergenic -61395 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 232.667-23 chr4 165737835 165738130 + 0.833333 NA intron (NR_121677, intron 2 of 3) intron (NR_121677, intron 2 of 3) 5089 NR_121677 101928131 Hs.406479 NR_121677 LOC101928131 - uncharacterized LOC101928131 ncRNA 151.5-35 chr2 46936680 46937116 + 0.833333 NA intron (NM_001288953, intron 2 of 20) AluJb|SINE|Alu -4326 NM_001288951 57217 Hs.370603 NM_020458 ENSG00000068724 TTC7A GIDID|MINAT|TTC7 tetratricopeptide repeat domain 7A protein-coding 132.5-54 chr20 20506442 20506753 + 0.833333 NA intron (NM_020343, intron 33 of 39) intron (NM_020343, intron 33 of 39) 138493 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 142.833-44 chr22 26373200 26373503 + 0.833333 NA intron (NM_001184775, intron 13 of 15) intron (NM_001184775, intron 13 of 15) -55909 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 137.333-55 chr2 213992643 213992823 + 0.833333 NA intron (NR_047660, intron 11 of 14) intron (NR_047660, intron 11 of 14) 234666 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 117-29 chr14 34497706 34497936 + 0.833333 NA Intergenic LTR65|LTR|ERV1 -35581 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 171.5-38 chr2 172130525 172131101 + 0.833333 NA Intergenic AluJr|SINE|Alu 27807 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 185.5-34 chr4 74299822 74300303 + 0.833333 NA intron (NM_001144978, intron 7 of 7) L2c|LINE|L2 -8408 NM_001270990 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 168.167-36 chr3 10866115 10866378 + 0.833333 NA intron (NM_014229, intron 5 of 13) MLT1J|LTR|ERVL-MaLR 50018 NM_001317406 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 333.833-3 chr17 14692284 14692700 + 0.833333 NA Intergenic L1M3de|LINE|L1 -322313 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 119.333-115 chr8 137902853 137903101 + 0.833333 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 180568 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 227.5-32 chr7 33285561 33286107 + 0.833333 NA intron (NM_198428, intron 9 of 22) intron (NM_198428, intron 9 of 22) 156270 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 116-52 chr2 167399374 167399616 + 0.833333 NA Intergenic Intergenic 212123 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 128.667-52 chr17 51877424 51877713 + 0.833333 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 281146 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 145.833-53 chr3 169980851 169981133 + 0.833333 NA intron (NM_003262, intron 3 of 7) intron (NM_003262, intron 3 of 7) 14185 NM_003262 7095 Hs.744859 NM_003262 ENSG00000008952 SEC62 Dtrp1|HTP1|TLOC1|TP-1 SEC62 homolog, preprotein translocation factor protein-coding 236.667-16 chr18 9704084 9704489 + 0.833333 NA Intergenic Intergenic -4015 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 138.333-52 chr17 75482876 75483383 + 0.833333 NA intron (NM_001321148, intron 1 of 30) L2b|LINE|L2 6592 NM_001351203 9772 Hs.514474 NM_014738 ENSG00000177728 TMEM94 IDDCDF|KIAA0195 transmembrane protein 94 protein-coding 179.833-28 chr5 45973971 45974216 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -277713 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 225-23 chr3 11410175 11410781 + 0.833333 NA intron (NM_001144912, intron 16 of 16) L1MB3|LINE|L1 138081 NM_001349236 10533 Hs.38032 NM_006395 ENSG00000197548 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 351.667 chr1 182609322 182610025 + 0.833333 NA Intergenic Intergenic -5284 NM_002928 6004 Hs.413297 NM_002928 ENSG00000143333 RGS16 A28-RGS14|A28-RGS14P|RGS-R regulator of G protein signaling 16 protein-coding 200.833-6 chr11 19231588 19231950 + 0.833333 NA intron (NM_001256372, intron 7 of 12) intron (NM_001256372, intron 7 of 12) 9176 NM_024680 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 202.167-3 chr10 22657313 22657702 + 0.833333 NA intron (NM_005028, intron 1 of 9) intron (NM_005028, intron 1 of 9) 56601 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 131.667-99 chr5 33054951 33055239 + 0.833333 NA Intergenic Intergenic 107652 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 228-15 chr18 3877230 3877585 + 0.833333 NA promoter-TSS (NR_038895) promoter-TSS (NR_038895) -773 NR_038895 201477 Hs.627208 NR_038895 ENSG00000263724 DLGAP1-AS3 - DLGAP1 antisense RNA 3 ncRNA 211.5-30 chr6 145745470 145746039 + 0.833333 NA intron (NR_038246, intron 1 of 2) intron (NR_038246, intron 1 of 2) -9731 NR_153398 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 179.667-19 chr17 43307143 43307520 + 0.833333 NA Intergenic Intergenic -7100 NR_002716 6066 NR_002716 ENSG00000274585 RNU2-1 RNU2|U2 RNA, U2 small nuclear 1 snRNA 169.833 chr1 90795407 90795644 + 0.833333 NA intron (NR_135038, intron 1 of 2) intron (NR_135038, intron 1 of 2) 40636 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 129.667-63 chr21 19525495 19525671 + 0.833333 NA Intergenic L2a|LINE|L2 374172 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 186-36 chr4 66819287 66819856 + 0.833333 NA Intergenic L1MA9|LINE|L1 542747 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 189.167-32 chr3 115064920 115065199 + 0.833333 NA intron (NM_015642, intron 1 of 9) HAL1|LINE|L1 6355 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 259-15 chr3 193528603 193529113 + 0.833333 NA intron (NM_032279, intron 1 of 29) intron (NM_032279, intron 1 of 29) -24355 NR_121666 101929198 Hs.450092 NR_046726 ATP13A4-AS1 - ATP13A4 antisense RNA 1 ncRNA 196-19 chr12 127189853 127190167 + 0.833333 NA Intergenic MLT1L|LTR|ERVL-MaLR 94273 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 200.167-23 chr2 29649499 29649779 + 0.833333 NA intron (NM_004304, intron 3 of 28) HAL1|LINE|L1 -174262 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 162.667-6 chr1 219357165 219357418 + 0.833333 NA Intergenic Charlie1|DNA|hAT-Charlie 182322 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 174.167-27 chr3 130531866 130532118 + 0.833333 NA Intergenic Intergenic -28342 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 170.5-34 chr2 173233950 173234192 + 0.833333 NA intron (NM_016653, intron 14 of 19) intron (NM_016653, intron 14 of 19) 47965 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 251.167-16 chr8 85308672 85309114 + 0.833333 NA Intergenic L1M5|LINE|L1 32821 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 243-15 chr18 22758194 22758541 + 0.833333 NA intron (NR_110782, intron 1 of 1) L1MA8|LINE|L1 28470 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 152.833-36 chr2 192154769 192155201 + 0.833333 NA intron (NM_001305134, intron 4 of 9) intron (NM_001305134, intron 4 of 9) 39948 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 210.333-35 chr6 89423537 89423926 + 0.833333 NA Intergenic MamGypsy2-I|LTR|Gypsy -9421 NM_001242809 22881 Hs.702213 NM_014942 ENSG00000135299 ANKRD6 - ankyrin repeat domain 6 protein-coding 317.167-11 chr6 146741052 146741732 + 0.833333 NA intron (NM_024694, intron 25 of 35) intron (NM_024694, intron 25 of 35) 62432 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 225.167-4 chr10 53161395 53161674 + 0.833333 NA Intergenic Intergenic -389834 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 144.333-16 chr10 93663976 93664429 + 0.833333 NA intron (NM_006204, intron 21 of 21) intron (NM_006204, intron 21 of 21) 38370 NR_144635 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 219.5-33 chr5 30800644 30801259 + 0.833333 NA Intergenic MLT1G3|LTR|ERVL-MaLR -392735 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 235.667 chr10 29032707 29033423 + 0.833333 NA Intergenic Tigger14a|DNA|TcMar-Tigger 186657 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 263.667-3 chr11 74939753 74940170 + 0.833333 NA intron (NM_001270381, intron 1 of 15) intron (NM_001270381, intron 1 of 15) 9130 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 186.5-18 chr11 114351039 114351545 + 0.833333 NA Intergenic Intergenic 28747 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 206.833-8 chr17 73565241 73565697 + 0.833333 NA intron (NM_001144952, intron 1 of 44) L1MEb|LINE|L1 51786 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 117.5-2 chr1 186981746 186982098 + 0.833333 NA intron (NM_024420, intron 17 of 17) L1M5|LINE|L1 -110920 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 181.667-22 chr2 20975819 20976082 + 0.833333 NA Intergenic Intergenic 68123 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 142-6 chr1 110275112 110275337 + 0.833333 NA Intergenic L1PB4|LINE|L1 63947 NR_036595 440600 Hs.649375 NR_036595 ENSG00000227963 RBM15-AS1 AS-RBM15 RBM15 antisense RNA 1 ncRNA 177.833-32 chr5 42094216 42094567 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 80954 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 124.833-55 chr22 33487673 33487875 + 0.833333 NA intron (NM_133642, intron 6 of 14) MIRb|SINE|MIR -51105 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 286.5-4 chr14 56153896 56154532 + 0.833333 NA intron (NM_021255, intron 1 of 5) intron (NM_021255, intron 1 of 5) 35803 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 137.5-46 chr2 102760643 102761097 + 0.833333 NA intron (NM_001321344, intron 2 of 5) AluSq2|SINE|Alu -1161 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 115.333-53 chr2 98191456 98191914 + 0.833333 NA intron (NM_001345864, intron 4 of 21) L1MEc|LINE|L1 42152 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 182-52 chr7 19382501 19382910 + 0.833333 NA Intergenic Intergenic -237284 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 125.833-76 chr6 62806927 62807158 + 0.833333 NA Intergenic Intergenic 512935 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 232.333-7 chr12 76925250 76925655 + 0.833333 NA Intergenic L4_C_Mam|LINE|RTE-X -46433 NM_001321 1466 Hs.530904 NM_001321 ENSG00000175183 CSRP2 CRP2|LMO5|SmLIM cysteine and glycine rich protein 2 protein-coding 173.667-17 chr14 49824738 49825271 + 0.833333 NA intron (NM_001301732, intron 16 of 31) HAL1|LINE|L1 27784 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 137-79 chr5 74391393 74391645 + 0.833333 NA intron (NR_126354, intron 2 of 2) MER57B2|LTR|ERV1 69033 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 117.833-34 chr17 13245770 13246027 + 0.833333 NA Intergenic Intergenic 60862 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 122.167-4 chr10 18421975 18422230 + 0.833333 NA intron (NM_201593, intron 3 of 13) intron (NM_201593, intron 3 of 13) 21527 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 179.167-2 chr1 15495861 15496269 + 0.833333 NA intron (NM_001278054, intron 2 of 4) PRIMA4_LTR|LTR|ERV1 19961 NM_015849 51032 Hs.631871 NM_015849 ENSG00000215704 CELA2B ELA2B chymotrypsin like elastase 2B protein-coding 164.167-50 chr5 5498199 5498455 + 0.833333 NA Intergenic Intergenic 75650 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 269 chr1 87090408 87090935 + 0.833333 NA intron (NM_012262, intron 3 of 6) L2a|LINE|L2 -39094 NR_026989 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 125.167-51 chr3 12123601 12123785 + 0.833333 NA intron (NM_133625, intron 1 of 12) FLAM_C|SINE|Alu 35219 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 126-63 chr4 56440744 56441015 + 0.833333 NA intron (NM_001079525, intron 1 of 9) intron (NM_001079525, intron 1 of 9) 4619 NM_001079525 10606 Hs.518774 NM_006452 ENSG00000128050 PAICS ADE2|ADE2H1|AIRC|PAIS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase protein-coding 196.5 chr1 85567514 85567955 + 0.833333 NA intron (NM_001134445, intron 1 of 6) L1MD|LINE|L1 10466 NM_001134445 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 145.5-18 chr14 33206098 33206422 + 0.833333 NA intron (NM_001164749, intron 2 of 11) MIR|SINE|MIR 267381 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 194.333-4 chr10 126811158 126811687 + 0.833333 NA Intergenic L1MEf|LINE|L1 -93987 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 147.333-98 chr9 79139064 79139456 + 0.833333 NA intron (NR_109771, intron 2 of 4) intron (NR_109771, intron 2 of 4) 6406 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 179.167-7 chr10 59049548 59049974 + 0.833333 NA Intergenic L1PA16|LINE|L1 50243 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 219.667-14 chr2 33963276 33963671 + 0.833333 NA intron (NR_126403, intron 4 of 5) Charlie18a|DNA|hAT-Charlie -103753 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 158.667-77 chr6 62768798 62769135 + 0.833333 NA Intergenic L1M2|LINE|L1 -482739 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 262.667-30 chr7 9385260 9385639 + 0.833333 NA Intergenic L1M2|LINE|L1 -248821 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 213.5-8 chr17 63223134 63223614 + 0.833333 NA intron (NM_025185, intron 6 of 25) MER66D|LTR|ERV1 216893 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 209.333-47 chr8 126354034 126354420 + 0.833333 NA Intergenic Intergenic 28732 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 208.5-5 chr1 118490098 118490580 + 0.833333 NA Intergenic Intergenic -305111 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 118.5-54 chr2 151468230 151468471 + 0.833333 NA intron (NM_001177665, intron 30 of 33) intron (NM_001177665, intron 30 of 33) 58448 NM_001177665 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 193.333-13 chr12 11474943 11475253 + 0.833333 NA intron (NR_148969, intron 2 of 4) MSTB1-int|LTR|ERVL-MaLR 11580 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 161.667-80 chr7 83753545 83754013 + 0.833333 NA Intergenic L1MB5|LINE|L1 -104640 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 153.333-47 chr3 3364118 3364345 + 0.833333 NA Intergenic Intergenic -184514 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 217-23 chr4 48368605 48369013 + 0.833333 NA intron (NM_020846, intron 1 of 7) intron (NM_020846, intron 1 of 7) 27280 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 275.667-22 chr6 87209818 87210294 + 0.833333 NA intron (NM_015021, intron 1 of 7) intron (NM_015021, intron 1 of 7) 54491 NM_015021 23036 Hs.444800 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 163.833-33 chr2 148032214 148032606 + 0.833333 NA intron (NM_018328, intron 2 of 14) L2b|LINE|L2 -10806 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 371.167-7 chr6 50517222 50517708 + 0.833333 NA Intergenic AluSx1|SINE|Alu -196079 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 258.833-14 chr4 90603956 90604555 + 0.833333 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 369224 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 184.167-42 chr6 28362888 28363199 + 0.833333 NA intron (NM_024493, intron 3 of 5) intron (NM_024493, intron 3 of 5) -6772 NM_001135215 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 195.167-36 chr7 88200646 88201046 + 0.833333 NA 3' UTR (NM_021722, exon 31 of 31) 3' UTR (NM_021722, exon 31 of 31) -15814 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 158.833-32 chr20 53042003 53042322 + 0.833333 NA intron (NM_173485, intron 1 of 2) (AT)n|Simple_repeat|Simple_repeat 69804 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 138-112 chr8 138414852 138415085 + 0.833333 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 82293 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 164-24 chr17 64521887 64522185 + 0.833333 NA intron (NM_138363, intron 7 of 19) AluSg|SINE|Alu 15059 NM_001316990 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 169.667-49 chr20 49268335 49268636 + 0.833333 NA intron (NM_021035, intron 3 of 13) intron (NM_021035, intron 3 of 13) 9572 NM_021035 57169 Hs.371794 NM_021035 ENSG00000124201 ZNFX1 - zinc finger NFX1-type containing 1 protein-coding 182.667-18 chr14 60956068 60956370 + 0.833333 NA intron (NM_001177963, intron 6 of 6) L1M1|LINE|L1 24860 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 235-19 chr2 133369867 133370386 + 0.833333 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 103931 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 265.167-10 chr21 28659606 28660120 + 0.833333 NA Intergenic L1M5|LINE|L1 120545 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 156.5-8 chr1 111166711 111166935 + 0.833333 NA intron (NM_001007794, intron 4 of 8) intron (NM_001007794, intron 4 of 8) 26600 NR_138483 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 136.5-93 chr8 121348771 121349039 + 0.833333 NA Intergenic Intergenic -290441 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 163.667-53 chr3 151942753 151943104 + 0.833333 NA Intergenic Intergenic -14753 NR_110202 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 221-22 chr4 115716935 115717360 + 0.833333 NA Intergenic L1ME3|LINE|L1 -582578 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 298-11 chr8 104971587 104972100 + 0.833333 NA Intergenic Intergenic -346595 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 135.167-37 chr16 46866658 46866828 + 0.833333 NA Intergenic AluSz|SINE|Alu -17619 NM_133443 84706 Hs.460693 NM_133443 ENSG00000166123 GPT2 ALT2|GPT 2|MRT49 glutamic--pyruvic transaminase 2 protein-coding 113.667-75 chr21 29743412 29743796 + 0.833333 NA intron (NM_000830, intron 1 of 16) AluSx|SINE|Alu -4571 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 178-62 chr8 28499947 28500320 + 0.833333 NA intron (NM_017412, intron 2 of 7) intron (NM_017412, intron 2 of 7) 5049 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 150-10 chr11 66713860 66714173 + 0.833333 NA intron (NM_006946, intron 6 of 36) intron (NM_006946, intron 6 of 36) 7383 NM_006946 6712 Hs.26915 NM_006946 ENSG00000173898 SPTBN2 GTRAP41|SCA5|SCAR14 spectrin beta, non-erythrocytic 2 protein-coding 136.833-27 chr17 30018557 30019071 + 0.833333 NA intron (NR_026738, intron 7 of 15) HAL1b|LINE|L1 77180 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 139.5-35 chr21 22848155 22848448 + 0.833333 NA Intergenic MER61D|LTR|ERV1 -230983 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 199.833-30 chr7 53355059 53355476 + 0.833333 NA Intergenic L1MEc|LINE|L1 319634 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 119.167-89 chr7 13743089 13743281 + 0.833333 NA Intergenic Intergenic 243329 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 237.667-14 chr6 33505590 33506175 + 0.833333 NA Intergenic L1M5|LINE|L1 51306 NM_152735 221504 Hs.591805 NM_152735 ENSG00000213588 ZBTB9 ZNF919 zinc finger and BTB domain containing 9 protein-coding 389.5-3 chr5 121422455 121423332 + 0.833333 NA Intergenic L2a|LINE|L2 100343 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 136-51 chr3 109569309 109569533 + 0.833333 NA Intergenic HAL1|LINE|L1 -33407 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 145.333-21 chr12 42422803 42423209 + 0.833333 NA intron (NM_016488, intron 9 of 12) intron (NM_016488, intron 9 of 12) 60609 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 151.167-3 chr1 112195277 112195571 + 0.833333 NA Intergenic L1MCa|LINE|L1 -200790 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 118.667-112 chr8 84356763 84357046 + 0.833333 NA intron (NM_001354319, intron 2 of 8) MER20B|DNA|hAT-Charlie -58580 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 122.667-76 chr4 40059782 40060009 + 0.833333 NA intron (NM_001318359, intron 1 of 18) MIR|SINE|MIR -2696 NR_027277 344967 Hs.534633 NR_027277 ENSG00000205794 LOC344967 - acyl-CoA thioesterase 7 pseudogene pseudo 142.833-21 chr15 80975251 80975444 + 0.833333 NA TTS (NM_015154) TTS (NM_015154) 14472 NR_126327 23184 Hs.578450 NM_015154 ENSG00000117899 MESD BOCA|MESDC2 mesoderm development LRP chaperone protein-coding 144.833-11 chr10 83500350 83500766 + 0.833333 NA Intergenic L1MEg|LINE|L1 176531 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 152.833-63 chr6 158907368 158907740 + 0.833333 NA intron (NR_160979, intron 2 of 2) intron (NR_160979, intron 2 of 2) 19077 NR_160979 100130967 Hs.32804 NM_001195032 C6orf99 - chromosome 6 open reading frame 99 ncRNA 244.333-11 chr16 74222863 74223251 + 0.833333 NA Intergenic AluSx1|SINE|Alu -7536 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 282.333-17 chr7 87276776 87277176 + 0.833333 NA Intergenic L1MA4A|LINE|L1 -56389 NM_001329473 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 157.833-38 chr2 98391548 98391953 + 0.833333 NA intron (NM_001079878, intron 5 of 6) intron (NM_001079878, intron 5 of 6) 45294 NM_001079878 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 137.667-77 chr4 166263282 166263461 + 0.833333 NA Intergenic Intergenic 390134 NM_001204760 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 118.167-57 chr6 143622880 143623034 + 0.833333 NA intron (NM_014721, intron 1 of 12) intron (NM_014721, intron 1 of 12) 14777 NM_001100166 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 160.167-56 chr6 44761968 44762195 + 0.833333 NA Intergenic LTR49-int|LTR|ERV1 -210200 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 225.333-35 chr9 69592887 69593292 + 0.833333 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 79282 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 298.667-2 chr10 86807763 86808410 + 0.833333 NA intron (NM_004329, intron 1 of 12) L1MC|LINE|L1 51447 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 173-15 chr13 55456670 55456977 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger 282369 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 361.333 chr12 37754369 37755041 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -562069 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 212.5-15 chr2 76331772 76332251 + 0.833333 NA Intergenic MIR|SINE|MIR -621096 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 223.167-2 chr1 92044299 92044852 + 0.833333 NA intron (NM_173567, intron 3 of 6) MamRep434|DNA|TcMar-Tigger 14590 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 202.833-4 chr11 23801261 23801515 + 0.833333 NA Intergenic Intergenic -382198 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 168.167-35 chr22 24352253 24352623 + 0.833333 NA intron (NM_015330, intron 11 of 16) intron (NM_015330, intron 11 of 16) 10330 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 154.5-60 chr5 163456565 163456948 + 0.833333 NA intron (NM_001329991, intron 3 of 3) intron (NM_001329991, intron 3 of 3) 3346 NR_138427 134492 Hs.140443 NM_145266 ENSG00000170584 NUDCD2 NudCL2 NudC domain containing 2 protein-coding 150.5-40 chr2 35829782 35830293 + 0.833333 NA Intergenic MER102b|DNA|hAT-Charlie 358632 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 177.5-29 chr15 90751257 90751589 + 0.833333 NA intron (NM_001287246, intron 4 of 22) intron (NM_001287246, intron 4 of 22) 34077 NM_000057 641 Hs.725208 NM_000057 ENSG00000197299 BLM BS|MGRISCE1|RECQ2|RECQL2|RECQL3 BLM RecQ like helicase protein-coding 120.5-23 chr12 5470198 5470520 + 0.833333 NA intron (NM_001102654, intron 1 of 1) intron (NM_001102654, intron 1 of 1) -23773 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 304.5-9 chr5 158691112 158691855 + 0.833333 NA Intergenic Intergenic -281710 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 240.5-13 chr4 55989291 55989713 + 0.833333 NA intron (NM_025009, intron 14 of 25) intron (NM_025009, intron 14 of 25) 40557 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 297.5-7 chr3 62545648 62546072 + 0.833333 NA intron (NM_003716, intron 11 of 29) intron (NM_003716, intron 11 of 29) -172310 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 150.5-74 chr7 48361275 48361503 + 0.833333 NA intron (NM_152701, intron 31 of 61) intron (NM_152701, intron 31 of 61) 189931 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 138.5-7 chr1 158811384 158811698 + 0.833333 NA Intergenic Intergenic -19810 NM_002432 4332 Hs.153837 NM_002432 ENSG00000163563 MNDA PYHIN3 myeloid cell nuclear differentiation antigen protein-coding 136.5-95 chr9 11497219 11497481 + 0.833333 NA Intergenic Intergenic 884144 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 225.5-41 chr5 77311772 77312235 + 0.833333 NA exon (NM_001349750, exon 3 of 23) exon (NM_001349750, exon 3 of 23) 101323 NM_001029851 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 209.833-22 chr5 142202170 142202700 + 0.833333 NA Intergenic Intergenic 93656 NM_030571 80762 Hs.9788 NM_030571 ENSG00000131507 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 120-68 chr20 56237551 56237930 + 0.833333 NA Intergenic Intergenic -10992 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 132.5-40 chr18 8102278 8102523 + 0.833333 NA intron (NM_002845, intron 11 of 30) Tigger1|DNA|TcMar-Tigger 264634 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 117.5-16 chr14 48424092 48424274 + 0.833333 NA Intergenic L1MB2|LINE|L1 -629169 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 244-17 chr5 146377644 146378174 + 0.833333 NA Intergenic AluJr|SINE|Alu 39070 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 127.667-64 chr4 60373815 60373984 + 0.833333 NA Intergenic L1MB3|LINE|L1 -548720 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 187.167-32 chr5 112276760 112277274 + 0.833333 NA intron (NM_001347887, intron 3 of 23) intron (NM_001347887, intron 3 of 23) 48734 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 213.833-28 chr4 83946878 83947433 + 0.833333 NA Intergenic Intergenic 352014 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 185.167-16 chr17 19906155 19906565 + 0.833333 NA intron (NM_007202, intron 14 of 14) MIRb|SINE|MIR -38424 NM_014683 9706 Hs.168762 NM_014683 ENSG00000083290 ULK2 ATG1B|Unc51.2 unc-51 like autophagy activating kinase 2 protein-coding 174 chr1 24590368 24590624 + 0.833333 NA intron (NM_001010980, intron 1 of 3) intron (NM_001010980, intron 1 of 3) 34409 NM_001010980 400746 Hs.200253 NM_001010980 ENSG00000184454 NCMAP C1orf130|MP11 non-compact myelin associated protein protein-coding 156.667-75 chr6 46704724 46705175 + 0.833333 NA TTS (NM_001168359) TTS (NM_001168359) -16784 NR_134643 101926934 Hs.664979 NR_134642 ENSG00000242973 LOC101926934 - uncharacterized LOC101926934 ncRNA 114.167-77 chr5 14509941 14510131 + 0.833333 NA non-coding (NR_134469, exon 57 of 57) non-coding (NR_134469, exon 57 of 57) 46053 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 115.167-34 chr14 67142260 67142501 + 0.833333 NA intron (NM_001024218, intron 16 of 21) intron (NM_001024218, intron 16 of 21) -47060 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 222.333-9 chr14 36105152 36105490 + 0.833333 NA intron (NR_073454, intron 1 of 2) L1MEf|LINE|L1 34894 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 192-11 chr11 105767389 105767734 + 0.833333 NA intron (NR_046356, intron 3 of 16) intron (NR_046356, intron 3 of 16) 156855 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 225.667-26 chr5 72644279 72644569 + 0.833333 NA intron (NR_105007, intron 1 of 2) intron (NR_105007, intron 1 of 2) 16245 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 122-18 chr14 51264175 51264410 + 0.833333 NA Intergenic Intergenic 24045 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 152.167-29 chr2 88218117 88218483 + 0.833333 NA Intergenic Intergenic 45161 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 217.5-29 chr21 14822821 14823257 + 0.833333 NA non-coding (NR_146322, exon 4 of 4) non-coding (NR_146322, exon 4 of 4) 95629 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 115.167-104 chr8 85129100 85129336 + 0.833333 NA exon (NM_001349638, exon 8 of 17) exon (NM_001349638, exon 8 of 17) 21980 NM_033402 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 139-62 chr6 132842987 132843331 + 0.833333 NA Intergenic Tigger13a|DNA|TcMar-Tigger 25940 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 207.333-9 chr10 107785958 107786387 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR 283121 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 138.5-27 chr14 48361811 48362003 + 0.833333 NA Intergenic HAL1|LINE|L1 -566893 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 207.5-30 chr6 51739171 51739498 + 0.833333 NA intron (NM_170724, intron 60 of 60) AluSx|SINE|Alu 117464 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 164.5-64 chrX 17556687 17556938 + 0.833333 NA intron (NR_046632, intron 2 of 2) MADE2|DNA|TcMar-Mariner 2315 NR_046632 100873920 Hs.584577 NR_046632 NHS-AS1 - NHS antisense RNA 1 ncRNA 114.5-10 chr10 11663800 11663988 + 0.833333 NA Intergenic Intergenic -52105 NR_125732 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 127.167-98 chrX 53755631 53755898 + 0.833333 NA Intergenic L1M4b|LINE|L1 -69045 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 245.833-17 chr8 138850254 138850623 + 0.833333 NA intron (NM_152888, intron 3 of 64) SST1|Satellite|centr 63603 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 204.167-4 chr10 31680283 31680721 + 0.833333 NA Intergenic MER44C|DNA|TcMar-Tigger 228424 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 234.333-5 chr10 10009881 10010224 + 0.833333 NA Intergenic Intergenic -48670 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 212.333-25 chr3 100778577 100779020 + 0.833333 NA intron (NM_001349332, intron 26 of 35) MER2B|DNA|TcMar-Tigger 69256 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 269-4 chr14 49555200 49555546 + 0.833333 NA Intergenic MER31A|LTR|ERV1 31007 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 138.333-77 chr3 152043772 152043970 + 0.833333 NA Intergenic Intergenic -115696 NR_110202 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 182.667-16 chr12 46702258 46702579 + 0.833333 NA Intergenic Intergenic 123579 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 201.5-35 chr7 95975605 95976062 + 0.833333 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 203327 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 439.833 chr20 57494495 57495300 + 0.833333 NA Intergenic Intergenic 29970 NR_072975 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 118-78 chr3 101226480 101226656 + 0.833333 NA 3' UTR (NM_016247, exon 19 of 19) 3' UTR (NM_016247, exon 19 of 19) 94007 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 140.667-38 chr17 29840860 29841193 + 0.833333 NA intron (NM_033389, intron 1 of 14) intron (NM_033389, intron 1 of 14) -79594 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 250.167-16 chr6 141766947 141767319 + 0.833333 NA Intergenic L1M1|LINE|L1 321666 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 175.833-11 chr14 63595703 63596184 + 0.833333 NA Intergenic Intergenic 45928 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 238.667-23 chr4 63428542 63429079 + 0.833333 NA Intergenic MIRb|SINE|MIR 980640 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 122.667-77 chr4 61063916 61064105 + 0.833333 NA Intergenic Intergenic -79646 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 260.167 chr1 45020356 45020987 + 0.833333 NA exon (NM_020883, exon 12 of 14) exon (NM_020883, exon 12 of 14) 8417 NR_158184 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 250.833-2 chr11 5652309 5652976 + 0.833333 NA Intergenic L1PA15|LINE|L1 20387 NM_130390 53840 Hs.729048 NM_021616 ENSG00000258659 TRIM34 IFP1|RNF21 tripartite motif containing 34 protein-coding 220.833-18 chr5 53076263 53076689 + 0.833333 NA intron (NR_073103, intron 23 of 28) intron (NR_073103, intron 23 of 28) 33281 NM_176806 4338 Hs.163645 NM_004531 ENSG00000164172 MOCS2 MCBPE|MOCO1|MOCODB|MPTS molybdenum cofactor synthesis 2 protein-coding 172.833-40 chr4 105288718 105289116 + 0.833333 NA intron (NR_126420, intron 2 of 5) L1MA4A|LINE|L1 63964 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 126.833-3 chr1 85357514 85357775 + 0.833333 NA intron (NM_001134445, intron 3 of 6) Charlie16a|DNA|hAT-Charlie 46862 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 119.667-71 chr4 70232294 70232744 + 0.833333 NA intron (NM_152997, intron 2 of 4) Tigger3b|DNA|TcMar-Tigger 6395 NM_152997 260436 Hs.733448 NM_152997 ENSG00000181617 FDCSP C4orf7|FDC-SP follicular dendritic cell secreted protein protein-coding 175.833-23 chr2 136634331 136634739 + 0.833333 NA Intergenic AluSz|SINE|Alu -131010 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 143.5-54 chr3 79172433 79172868 + 0.833333 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -153191 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 181.5-34 chr20 24941462 24941856 + 0.833333 NA Intergenic ERVL-B4-int|LTR|ERVL -7610 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 198.333-42 chr8 53674624 53675029 + 0.833333 NA Intergenic FAM|SINE|Alu -150861 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 153-25 chr19 37980171 37980430 + 0.833333 NA intron (NM_015073, intron 1 of 21) L1MC5a|LINE|L1 73092 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 201-31 chr4 136322439 136322840 + 0.833333 NA Intergenic L1M1|LINE|L1 -408959 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 154.5-39 chr2 186709922 186710202 + 0.833333 NA intron (NM_177454, intron 1 of 7) intron (NM_177454, intron 1 of 7) 16002 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 202.667-25 chr2 75977123 75977436 + 0.833333 NA Intergenic L1PB1|LINE|L1 -266364 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 208.333-30 chr3 155035403 155035812 + 0.833333 NA intron (NM_001354642, intron 1 of 22) L2a|LINE|L2 11483 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 195.333-25 chr2 148394589 148394876 + 0.833333 NA intron (NM_018328, intron 5 of 14) L1M5|LINE|L1 -250019 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 228.5-26 chr5 34828674 34829140 + 0.833333 NA intron (NM_015577, intron 16 of 17) intron (NM_015577, intron 16 of 17) -10257 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 156.833-30 chr20 44142886 44143179 + 0.833333 NA intron (NM_020433, intron 2 of 5) L2c|LINE|L2 44156 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 197.167-14 chr15 66776276 66776650 + 0.833333 NA intron (NR_027654, intron 4 of 4) MIR|SINE|MIR 74227 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 203.667-37 chrUn_KI270442v1 57947 58333 + 0.833333 NA NA (GGAAT)n|Simple_repeat|Simple_repeat NA NA 184.5-14 chr12 38415105 38415559 + 0.833333 NA Intergenic MIR|SINE|MIR 98558 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 127.833-26 chr15 58216059 58216285 + 0.833333 NA Intergenic L1MC4|LINE|L1 77791 NM_001320635 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 163.167-49 chr9 38300262 38300554 + 0.833333 NA Intergenic L1ME1|LINE|L1 -92294 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 186.333-6 chr1 194678666 194679026 + 0.833333 NA Intergenic Intergenic 1374101 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 197.667-40 chr22 19485977 19486378 + 0.833333 NA intron (NM_001369291, intron 5 of 18) AluSx|SINE|Alu 6257 NR_161281 8318 Hs.474217 NM_003504 ENSG00000093009 CDC45 CDC45L|CDC45L2|MGORS7|PORC-PI-1 cell division cycle 45 protein-coding 218.333-27 chr4 39052730 39053083 + 0.833333 NA intron (NM_001171654, intron 1 of 10) intron (NM_001171654, intron 1 of 10) 8075 NM_001171654 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 284.333-10 chr8 82916444 82916845 + 0.833333 NA intron (NR_134295, intron 2 of 3) L1MC|LINE|L1 4540 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 168.333-65 chrX 17554382 17554676 + 0.833333 NA intron (NR_046632, intron 2 of 2) intron (NR_046632, intron 2 of 2) 4598 NR_046632 100873920 Hs.584577 NR_046632 NHS-AS1 - NHS antisense RNA 1 ncRNA 191.833-16 chr3 7514624 7515005 + 0.833333 NA intron (NM_000844, intron 7 of 9) intron (NM_000844, intron 7 of 9) 20470 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 174.833-11 chr14 64381486 64381755 + 0.833333 NA Intergenic Intergenic -6733 NM_005956 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 326.333-6 chr5 94669613 94670105 + 0.833333 NA intron (NM_032290, intron 12 of 20) intron (NM_032290, intron 12 of 20) 51190 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 113.833-19 chr14 61404475 61404742 + 0.833333 NA intron (NM_006255, intron 2 of 13) L2a|LINE|L2 83165 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 118-28 chr12 126784632 126784879 + 0.833333 NA Intergenic Intergenic -12493 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 126.333-61 chr2 161174717 161174994 + 0.833333 NA intron (NM_001199135, intron 1 of 7) intron (NM_001199135, intron 1 of 7) 14427 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 204.167-20 chr3 149112994 149113505 + 0.833333 NA Intergenic LOR1-int|LTR|ERV1 -16389 NM_001308258 84343 Hs.558314 NM_032383 ENSG00000163755 HPS3 BLOC2S1|SUTAL HPS3 biogenesis of lysosomal organelles complex 2 subunit 1 protein-coding 147.5-62 chr4 19777455 19777699 + 0.833333 NA Intergenic Intergenic -474328 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 132.333-10 chr10 52159960 52160197 + 0.833333 NA intron (NM_001098512, intron 8 of 17) intron (NM_001098512, intron 8 of 17) 154050 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 143.333-78 chr6 115292204 115292586 + 0.833333 NA Intergenic Intergenic 351440 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 226-22 chr5 88276490 88276872 + 0.833333 NA intron (NR_039995, intron 2 of 2) L1ME3E|LINE|L1 7665 NR_105019 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 173.833-17 chr12 24384489 24384762 + 0.833333 NA intron (NM_152989, intron 2 of 17) Tigger7|DNA|TcMar-Tigger 161354 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 129.5-63 chr3 171583811 171584035 + 0.833333 NA Intergenic L1MB8|LINE|L1 -123515 NR_027767 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 170 chr1 56661617 56661886 + 0.833333 NA intron (NM_006252, intron 1 of 8) Kanga2_a|DNA|TcMar-Tc2 -16433 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 129.5-46 chr2 118217616 118217780 + 0.833333 NA Intergenic MIR|SINE|MIR -31312 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 121.333-87 chr5 156622440 156622689 + 0.833333 NA intron (NM_001128209, intron 5 of 7) MER39|LTR|ERV1 -227731 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 162.833-44 chr7 16137966 16138275 + 0.833333 NA intron (NM_001101426, intron 9 of 9) intron (NM_001101426, intron 9 of 9) -72366 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 139.833-39 chr2 30476260 30476602 + 0.833333 NA 5' UTR (NM_001304445, exon 3 of 8) 5' UTR (NM_001304445, exon 3 of 8) 29185 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 113.833-75 chr5 181135476 181135636 + 0.833333 NA Intergenic L1MEg|LINE|L1 -10252 NM_001258283 26693 Hs.742585 NM_001258283 ENSG00000185372 OR2V1 OR2V1P|OST265 olfactory receptor family 2 subfamily V member 1 protein-coding 148.167-44 chr2 194651508 194651808 + 0.833333 NA Intergenic Intergenic -78937 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 148.833-14 chr12 110349787 110350232 + 0.833333 NA 3' UTR (NM_170665, exon 20 of 20) 3' UTR (NM_170665, exon 20 of 20) 53721 NM_016238 51434 Hs.719935 NM_016238 ENSG00000196510 ANAPC7 APC7 anaphase promoting complex subunit 7 protein-coding 163.333-54 chr3 176125839 176126202 + 0.833333 NA Intergenic L1MB7|LINE|L1 -118531 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 175.667-2 chr1 73111772 73112127 + 0.833333 NA Intergenic L1PB4|LINE|L1 -194221 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 124.333-71 chr4 94289024 94289256 + 0.833333 NA intron (NM_001128429, intron 23 of 23) intron (NM_001128429, intron 23 of 23) 35831 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 231-27 chr7 38895870 38896256 + 0.833333 NA intron (NM_014396, intron 2 of 28) L1MC4|LINE|L1 13128 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 121.833-13 chr12 44639681 44639927 + 0.833333 NA intron (NM_006159, intron 14 of 20) L2|LINE|L2 235857 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 211.167-6 chr11 5303664 5303961 + 0.833333 NA Intergenic Intergenic -1866 NM_033179 79339 Hs.679499 NM_033179 ENSG00000183251 OR51B4 HOR5'Beta1 olfactory receptor family 51 subfamily B member 4 protein-coding 132.5-61 chr3 188588435 188588746 + 0.833333 NA intron (NM_001167672, intron 4 of 9) MIR|SINE|MIR -19924 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 252.667-2 chr1 188313473 188313977 + 0.833333 NA Intergenic MLT1G|LTR|ERVL-MaLR 870097 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 242.833-7 chr3 193671701 193672225 + 0.833333 NA intron (NM_130831, intron 26 of 27) intron (NM_130831, intron 26 of 27) -44631 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 130.5-36 chr17 82817920 82818198 + 0.833333 NA intron (NM_005993, intron 13 of 38) intron (NM_005993, intron 13 of 38) 21963 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 173.167-14 chr14 79554040 79554531 + 0.833333 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 274905 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 266-18 chr4 78684692 78685138 + 0.833333 NA TTS (NR_038304) TTS (NR_038304) 38921 NR_038304 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 179.333-50 chr6 124565054 124565482 + 0.833333 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 282263 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 185.667-54 chr7 70185410 70185897 + 0.833333 NA intron (NM_015570, intron 4 of 18) L4_C_Mam|LINE|RTE-X 587178 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 143.5-40 chr2 67776969 67777256 + 0.833333 NA Intergenic Intergenic 48450 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 134.333-26 chr12 42220858 42221136 + 0.833333 NA intron (NR_135140, intron 2 of 6) intron (NR_135140, intron 2 of 6) 17371 NM_001320080 10138 Hs.649195 NM_005748 ENSG00000015153 YAF2 - YY1 associated factor 2 protein-coding 208.167-18 chr4 63710259 63710634 + 0.833333 NA Intergenic HAL1|LINE|L1 699004 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 192-54 chr8 129188069 129188375 + 0.833333 NA Intergenic Intergenic 53018 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 181.167-8 chr15 77248742 77249046 + 0.833333 NA intron (NM_024776, intron 4 of 7) AluSx|SINE|Alu -23490 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 160-31 chr15 60408761 60409117 + 0.833333 NA Intergenic Intergenic -10953 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 337.667-6 chr7 33074958 33075692 + 0.833333 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -12528 NM_001002009 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 189.5-45 chr4 81783921 81784328 + 0.833333 NA Intergenic AluY|SINE|Alu -312217 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 238.167-17 chr4 58702979 58703407 + 0.833333 NA Intergenic Intergenic -166865 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 171.833-48 chr8 125071005 125071232 + 0.833333 NA intron (NM_014846, intron 9 of 28) L2b|LINE|L2 20674 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 157.667-4 chr1 114836526 114836783 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -18149 NM_001282542 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 163.833-62 chr9 17733128 17733449 + 0.833333 NA intron (NM_003026, intron 1 of 8) L1PA3|LINE|L1 154222 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 162.167-15 chr14 37127747 37127993 + 0.833333 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -44156 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 129.833-14 chr12 23525726 23526008 + 0.833333 NA Intergenic Intergenic 58719 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 238.167-21 chr6 130609156 130609584 + 0.833333 NA Intergenic L2b|LINE|L2 172253 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 142.167-2 chr1 109796818 109797090 + 0.833333 NA Intergenic Intergenic -33031 NM_139053 79574 Hs.485352 NM_024526 ENSG00000198758 EPS8L3 EPS8R3 EPS8 like 3 protein-coding 137.5-45 chr2 59160207 59160623 + 0.833333 NA Intergenic L1MEb|LINE|L1 -57293 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 147.667-5 chr1 118125259 118125456 + 0.833333 NA intron (NM_206996, intron 3 of 48) L1MA5|LINE|L1 59871 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 225-37 chr8 81108084 81108402 + 0.833333 NA intron (NM_018440, intron 1 of 8) intron (NM_018440, intron 1 of 8) 3825 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 181.667-38 chr3 117193458 117193755 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR 272175 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 192-40 chr5 114594743 114595570 + 0.833333 NA intron (NR_130785, intron 3 of 12) intron (NR_130785, intron 3 of 12) 19115 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 133.167-11 chr10 84681055 84681272 + 0.833333 NA Intergenic Intergenic 255994 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 184.333-49 chr5 146292714 146293117 + 0.833333 NA Intergenic Intergenic -45924 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 184.667-39 chr4 92661602 92662102 + 0.833333 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 357453 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 187.5-42 chr5 100275030 100275302 + 0.833333 NA Intergenic Intergenic 113088 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 201.167-34 chr8 80995305 80995895 + 0.833333 NA intron (NM_018440, intron 3 of 8) intron (NM_018440, intron 3 of 8) 116468 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 220.5-8 chr11 29069333 29069789 + 0.833333 NA Intergenic L1PA15|LINE|L1 -524852 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 215.333-8 chr11 41880935 41881238 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 166518 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 133.667-97 chr8 119726675 119726982 + 0.833333 NA Intergenic Intergenic -53438 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 295.5-9 chr7 75940682 75941128 + 0.833333 NA intron (NM_001367562, intron 2 of 16) AluJr|SINE|Alu -2878 NR_002955 677801 Hs.689708 NR_002955 ENSG00000201643 SNORA14A ACA14a small nucleolar RNA, H/ACA box 14A snoRNA 153-39 chr4 64252141 64252381 + 0.833333 NA Intergenic Intergenic 157189 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 198.833 chr1 188647397 188647645 + 0.833333 NA Intergenic L1MEg|LINE|L1 1203893 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 141.667-11 chr10 105828773 105829023 + 0.833333 NA Intergenic Intergenic -8565 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 152.5-59 chr7 48173853 48174089 + 0.833333 NA intron (NM_152701, intron 1 of 61) intron (NM_152701, intron 1 of 61) 2513 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 279.5-8 chr4 169746183 169746732 + 0.833333 NA intron (NM_017867, intron 4 of 7) intron (NM_017867, intron 4 of 7) 11487 NM_017867 54969 Hs.406756 NM_017867 ENSG00000056050 HPF1 C4orf27 histone PARylation factor 1 protein-coding 170.333-70 chr8 37891440 37891721 + 0.833333 NA intron (NM_001002814, intron 1 of 5) intron (NM_001002814, intron 1 of 5) 7917 NM_001002814 80223 Hs.191179 NM_025151 ENSG00000156675 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 protein-coding 192.333-33 chr3 65645456 65645954 + 0.833333 NA intron (NM_001365904, intron 1 of 24) L1MD3|LINE|L1 -248111 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 266.833-8 chr9 29641680 29642305 + 0.833333 NA Intergenic L1MD1|LINE|L1 -428391 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 128.5-36 chr2 50377469 50377732 + 0.833333 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -29844 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 143.333-77 chr6 83033250 83033507 + 0.833333 NA intron (NR_146807, intron 5 of 10) MSTB|LTR|ERVL-MaLR 32463 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 178.333-5 chr1 173333555 173333781 + 0.833333 NA intron (NR_037845, intron 2 of 2) MLT1A|LTR|ERVL-MaLR -126337 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 204.333-55 chr8 114294112 114294483 + 0.833333 NA Intergenic MER33|DNA|hAT-Charlie -857358 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 143-70 chr6 47586900 47587163 + 0.833333 NA intron (NM_012120, intron 11 of 17) intron (NM_012120, intron 11 of 17) -69441 NM_001368115 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 114.333-93 chr4 35529535 35529753 + 0.833333 NA Intergenic L1MA9|LINE|L1 714295 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 271.833-2 chr1 93277664 93278024 + 0.833333 NA intron (NM_001306076, intron 28 of 28) intron (NM_001306076, intron 28 of 28) 67967 NR_034089 100131564 Hs.732666 NR_034089 CCDC18-AS1 - CCDC18 antisense RNA 1 ncRNA 139.667-100 chrX 67464136 67464315 + 0.833333 NA Intergenic L1MC|LINE|L1 -79796 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 131.5-15 chr11 55968188 55968406 + 0.833333 NA exon (NM_001005491, exon 1 of 1) exon (NM_001005491, exon 1 of 1) 166 NM_001005491 282770 Hs.554525 NM_001005491 ENSG00000174970 OR10AG1 OR11-160 olfactory receptor family 10 subfamily AG member 1 protein-coding 128.667-89 chr4 106278699 106278908 + 0.833333 NA intron (NM_001290768, intron 3 of 26) L1MEc|LINE|L1 -36807 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 146.167-46 chr4 104955287 104955559 + 0.833333 NA Intergenic Intergenic -190452 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 116.167-5 chr1 151420916 151421133 + 0.833333 NA intron (NM_001194938, intron 9 of 17) MER44A|DNA|TcMar-Tigger 21181 NM_207171 23126 Hs.489873 NM_015100 ENSG00000143442 POGZ MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m pogo transposable element derived with ZNF domain protein-coding 181.167-16 chr21 34349449 34349890 + 0.833333 NA Intergenic AluSx|SINE|Alu -14355 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 228-16 chr18 4185544 4185985 + 0.833333 NA intron (NM_001242761, intron 1 of 11) L1PREC2|LINE|L1 -78838 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 303-6 chr3 126046707 126047219 + 0.833333 NA intron (NM_001008486, intron 2 of 10) AluSx1|SINE|Alu 9812 NM_001008487 54946 Hs.573007 NM_017836 ENSG00000114544 SLC41A3 SLC41A1-L2 solute carrier family 41 member 3 protein-coding 250.5-21 chr6 45713461 45713975 + 0.833333 NA Intergenic Intergenic 223879 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 149.5-35 chr2 54193603 54193884 + 0.833333 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 62486 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 200.667-8 chr10 52545804 52546250 + 0.833333 NA Intergenic Intergenic -75494 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 228.333-17 chr21 29644792 29645137 + 0.833333 NA intron (NM_000830, intron 6 of 16) MIR|SINE|MIR 48924 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 259.833-3 chr16 84403633 84404032 + 0.833333 NA intron (NM_014861, intron 2 of 26) AluSp|SINE|Alu -2756 NM_001291454 9914 Hs.6168 NM_014861 ENSG00000064270 ATP2C2 SPCA2 ATPase secretory pathway Ca2+ transporting 2 protein-coding 165.667-74 chr8 126758449 126758741 + 0.833333 NA Intergenic Intergenic -200117 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 195.667-23 chr2 48397402 48397838 + 0.833333 NA Intergenic Intergenic -43146 NM_001135629 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 150.5-48 chr22 30773943 30774381 + 0.833333 NA intron (NM_001282740, intron 1 of 12) MIRc|SINE|MIR 9909 NM_001282740 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 230.333-6 chr16 68434581 68435073 + 0.833333 NA intron (NM_018667, intron 1 of 8) intron (NM_018667, intron 1 of 8) 13681 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 140-17 chr12 43079619 43079856 + 0.833333 NA Intergenic Intergenic -75578 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 161-68 chr7 17401397 17401630 + 0.833333 NA intron (NR_110015, intron 1 of 2) intron (NR_110015, intron 1 of 2) 26596 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 162-7 chr1 171144338 171144621 + 0.833333 NA intron (NR_002601, intron 1 of 6) intron (NR_002601, intron 1 of 6) 6739 NR_002601 388714 Hs.448988 NR_002601 ENSG00000117507 FMO6P FMO6 flavin containing dimethylaniline monoxygenase 6, pseudogene pseudo 150.667-57 chr20 53102656 53102954 + 0.833333 NA intron (NM_173485, intron 1 of 2) MER112|DNA|hAT-Charlie -82478 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 223-37 chr9 90775491 90775765 + 0.833333 NA Intergenic Intergenic -25972 NM_001174168 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 190.167-44 chr7 90606545 90606813 + 0.833333 NA intron (NM_001287135, intron 2 of 14) intron (NM_001287135, intron 2 of 14) 10358 NM_001287135 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 145.667-61 chr3 55723134 55723446 + 0.833333 NA intron (NR_132749, intron 14 of 17) L1ME4a|LINE|L1 -63821 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 137.167-50 chr5 5064644 5065005 + 0.833333 NA intron (NR_026994, intron 4 of 6) intron (NR_026994, intron 4 of 6) 13487 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 200.167-40 chr5 42890351 42890644 + 0.833333 NA Intergenic AluJr|SINE|Alu -78421 NM_001093726 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 120.333-22 chr10 113980187 113980371 + 0.833333 NA Intergenic Intergenic -63587 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 133.5-56 chr5 61009478 61009780 + 0.833333 NA intron (NM_174889, intron 1 of 3) intron (NM_174889, intron 1 of 3) 64424 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 188.667-42 chr5 26758346 26758623 + 0.833333 NA Intergenic L1MB7|LINE|L1 280102 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 142.333-104 chrX 43316774 43317075 + 0.833333 NA Intergenic L2c|LINE|L2 139930 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 181.833-24 chr2 57986338 57986689 + 0.833333 NA intron (NM_001288838, intron 1 of 15) L1ME1|LINE|L1 -60129 NM_001288836 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 149.5-53 chr5 18081984 18082364 + 0.833333 NA Intergenic Intergenic 274900 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 244.167-7 chr15 68453543 68453958 + 0.833333 NA Intergenic L1MA9|LINE|L1 -21587 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 258.5-20 chr6 56793563 56794008 + 0.833333 NA intron (NM_001144770, intron 2 of 94) intron (NM_001144770, intron 2 of 94) 49880 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 156.333-84 chr7 88468938 88469199 + 0.833333 NA Intergenic Intergenic -162174 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 181.5-26 chr2 54972320 54972722 + 0.833333 NA TTS (NM_001039753) TTS (NM_001039753) 37751 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 290.5-8 chr17 58632273 58632682 + 0.833333 NA intron (NM_031272, intron 2 of 31) FLAM_C|SINE|Alu 59578 NM_198393 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 208.833-21 chr2 139629007 139629460 + 0.833333 NA Intergenic Intergenic 731909 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 186.667-65 chr5 25450463 25450859 + 0.833333 NA Intergenic Intergenic 259708 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 181.5-36 chr22 47541468 47541766 + 0.833333 NA Intergenic Intergenic -54506 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 115.667-13 chr10 90452411 90452721 + 0.833333 NA intron (NR_110657, intron 2 of 6) intron (NR_110657, intron 2 of 6) 88239 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 225.333-18 chr2 191460812 191461207 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR 215605 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 281-7 chr16 82707758 82708358 + 0.833333 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) 19127 NR_107025 102465863 NR_107025 ENSG00000277387 MIR8058 hsa-mir-8058 microRNA 8058 ncRNA 157.5-23 chr16 66021807 66022013 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -344781 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 134-93 chr6 40201015 40201337 + 0.833333 NA Intergenic L1MA9|LINE|L1 154830 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 180.5-29 chr2 60976198 60976620 + 0.833333 NA intron (NM_144709, intron 4 of 17) intron (NM_144709, intron 4 of 17) 40803 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 178.833-2 chr1 75030516 75030920 + 0.833333 NA Intergenic L1MB7|LINE|L1 -97716 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 245.833-2 chr10 118878305 118878792 + 0.833333 NA Intergenic L1ME2|LINE|L1 -123578 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 130.667-87 chr7 41421611 41421922 + 0.833333 NA Intergenic Intergenic -272153 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 119-48 chr18 77774646 77774788 + 0.833333 NA Intergenic Intergenic 219010 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 180.833 chr1 8761765 8762032 + 0.833333 NA intron (NM_001042681, intron 1 of 22) AluSp|SINE|Alu 55742 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 139.833-28 chr16 58389731 58390025 + 0.833333 NA Intergenic Intergenic -2593 NM_022770 64785 Hs.47125 NM_022770 ENSG00000181938 GINS3 PSF3 GINS complex subunit 3 protein-coding 171.833-43 chr6 120177112 120177402 + 0.833333 NA Intergenic L1M4|LINE|L1 162078 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 123.667-54 chr2 145591213 145591403 + 0.833333 NA Intergenic Intergenic 923341 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 205.333-24 chr2 74542119 74542560 + 0.833333 NA intron (NM_032603, intron 4 of 13) intron (NM_032603, intron 4 of 13) -6681 NM_001197260 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 119.167-99 chr9 35500795 35501062 + 0.833333 NA intron (NM_001330740, intron 1 of 10) intron (NM_001330740, intron 1 of 10) 10817 NM_001330740 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 166.333-51 chr3 173560510 173560871 + 0.833333 NA intron (NM_014932, intron 2 of 6) intron (NM_014932, intron 2 of 6) -23744 NM_001365928 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 179-25 chr2 114497083 114497351 + 0.833333 NA intron (NM_001321908, intron 2 of 25) (ATATAT)n|Simple_repeat|Simple_repeat 35640 NM_001321905 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 192.667-22 chr17 29981164 29981736 + 0.833333 NA intron (NR_026738, intron 4 of 15) L2c|LINE|L2 39816 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 147.833-65 chr8 96667596 96667977 + 0.833333 NA intron (NM_016134, intron 1 of 7) L2c|LINE|L2 22544 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 258.667-16 chr3 46797603 46797955 + 0.833333 NA Intergenic L1MC3|LINE|L1 14795 NR_160551 729756 NR_160551 PRSS44P PRSS44|TESSP-4|TESSP4 serine protease 44, pseudogene pseudo 300.5-11 chr4 124304093 124304508 + 0.833333 NA Intergenic (T)n|Simple_repeat|Simple_repeat 254134 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 180.333-24 chr18 6104487 6104858 + 0.833333 NA intron (NM_001365769, intron 14 of 16) L1MB1|LINE|L1 -152072 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 239.5-8 chr13 58339892 58340348 + 0.833333 NA Intergenic L1MA1|LINE|L1 -107003 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 164.5-6 chr10 77293315 77293545 + 0.833333 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 57331 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 178.333-54 chr9 78266914 78267317 + 0.833333 NA TTS (NM_001098802) TTS (NM_001098802) -30010 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 144-11 chr11 79384018 79384279 + 0.833333 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 17961 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 193.167-26 chr3 33621195 33621582 + 0.833333 NA intron (NM_001365634, intron 11 of 35) L1M5|LINE|L1 38291 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 137.833 chr1 99395650 99395893 + 0.833333 NA Intergenic Intergenic 92033 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 237.5-11 chr17 60362305 60362932 + 0.833333 NA intron (NM_032582, intron 1 of 33) intron (NM_032582, intron 1 of 33) 29515 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 239.333-6 chr12 17271883 17272425 + 0.833333 NA Intergenic Intergenic 283407 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 167.667-57 chr3 32323126 32323379 + 0.833333 NA intron (NM_001320308, intron 1 of 2) intron (NM_001320308, intron 1 of 2) -68601 NM_181472 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 240.667-28 chr3 193380551 193381077 + 0.833333 NA Intergenic L2b|LINE|L2 -2061 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 224.333-11 chr14 84581403 84581726 + 0.833333 NA Intergenic Intergenic -690368 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 156.167-59 chr7 114121229 114121540 + 0.833333 NA intron (NR_033766, intron 1 of 19) MLT1A0|LTR|ERVL-MaLR 35057 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 212-20 chr2 151662190 151662569 + 0.833333 NA intron (NM_001271208, intron 45 of 182) intron (NM_001271208, intron 45 of 182) 72097 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 161.833-8 chr13 36162041 36162418 + 0.833333 NA Intergenic Intergenic -30290 NM_001330072 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 181-54 chr5 124926116 124926464 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -110541 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 168.167-29 chr2 41297257 41297552 + 0.833333 NA Intergenic Intergenic -580151 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 125-79 chr6 135582722 135583007 + 0.833333 NA intron (NR_152845, intron 2 of 4) intron (NR_152845, intron 2 of 4) 85063 NR_152844 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 155-32 chr2 81493833 81494332 + 0.833333 NA Intergenic Intergenic -27136 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 121.667-72 chr4 74647533 74647767 + 0.833333 NA Intergenic L1MD|LINE|L1 146873 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 166.167-61 chr7 82274997 82275601 + 0.833333 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 168478 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 194.833-9 chr14 81486453 81486871 + 0.833333 NA intron (NM_005065, intron 16 of 20) intron (NM_005065, intron 16 of 20) -36505 NR_109999 100506700 Hs.116304 NR_109999 ENSG00000258675 LINC02308 - long intergenic non-protein coding RNA 2308 ncRNA 148.667-21 chr14 60829726 60830049 + 0.833333 NA intron (NM_002431, intron 6 of 7) intron (NM_002431, intron 6 of 7) 95126 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 239-9 chr18 581460 581867 + 0.833333 NA 3' UTR (NM_004066, exon 1 of 1) 3' UTR (NM_004066, exon 1 of 1) 1283 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 233-2 chr10 5375839 5376266 + 0.833333 NA Intergenic Intergenic 11086 NM_053049 114131 Hs.511775 NM_053049 ENSG00000178473 UCN3 SCP|SPC|UCNIII urocortin 3 protein-coding 185.333-65 chr8 145039118 145039486 + 0.833333 NA Intergenic MER70C|LTR|ERVL -13165 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 143.667-36 chr14 34073513 34073725 + 0.833333 NA Intergenic L1MC4|LINE|L1 -122545 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 174-7 chr10 23898153 23898556 + 0.833333 NA intron (NM_001098500, intron 1 of 18) (TA)n|Simple_repeat|Simple_repeat 203627 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 277.667-11 chr4 94779971 94780529 + 0.833333 NA intron (NM_001203, intron 1 of 12) L1MB7|LINE|L1 22295 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 171.667-68 chr5 137280965 137281298 + 0.833333 NA intron (NM_004598, intron 2 of 10) (ATTC)n|Simple_repeat|Simple_repeat 152934 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 135.833-69 chr8 13194413 13194631 + 0.833333 NA intron (NM_001348082, intron 5 of 16) intron (NM_001348082, intron 5 of 16) -61233 NM_001348084 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 151.5-40 chr2 158593244 158593618 + 0.833333 NA intron (NM_001005476, intron 3 of 20) intron (NM_001005476, intron 3 of 20) 136479 NM_003628 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 129.5-58 chr22 48364755 48364930 + 0.833333 NA Intergenic Intergenic 90478 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 287.333-4 chr16 73784876 73785557 + 0.833333 NA Intergenic HAL1|LINE|L1 398411 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 168.5-67 chr8 79547587 79548105 + 0.833333 NA Intergenic Charlie24|DNA|hAT-Charlie -63271 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 324.5-2 chr14 51858925 51859385 + 0.833333 NA Intergenic Intergenic -1457 NM_053064 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 140.833-31 chr2 103249520 103249794 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -265228 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 150-76 chr7 8176869 8177140 + 0.833333 NA intron (NM_001350836, intron 7 of 14) intron (NM_001350836, intron 7 of 14) 85048 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 118-47 chr17 60818533 60818689 + 0.833333 NA intron (NM_001330413, intron 7 of 25) intron (NM_001330413, intron 7 of 25) 140760 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 167.833-54 chr7 47404076 47404475 + 0.833333 NA intron (NM_022748, intron 13 of 30) MIRb|SINE|MIR 60528 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 154.167-32 chr2 117362922 117363241 + 0.833333 NA Intergenic L1PB3|LINE|L1 -451610 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 298.167-4 chr2 113964755 113965667 + 0.833333 NA Intergenic Intergenic -4111 NR_148507 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 155-22 chr12 123817172 123817398 + 0.833333 NA intron (NM_207437, intron 20 of 77) L1MEg|LINE|L1 54790 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 215.167-6 chr10 80744098 80744591 + 0.833333 NA Intergenic AluYf1|SINE|Alu 94547 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 130.833-65 chr7 38981698 38981880 + 0.833333 NA intron (NR_138047, intron 6 of 6) intron (NR_138047, intron 6 of 6) 3880 NM_001370959 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 154.167-10 chr11 56539341 56539550 + 0.833333 NA Intergenic Intergenic 3812 NM_001005245 219487 Hs.553632 NM_001005245 ENSG00000255223 OR5M11 OR11-199 olfactory receptor family 5 subfamily M member 11 protein-coding 187.167-18 chr2 75267087 75267501 + 0.833333 NA Intergenic L1MA3|LINE|L1 -67774 NM_015727 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 127.833-47 chr20 46625547 46625856 + 0.833333 NA intron (NM_001193340, intron 2 of 12) L1ME2z|LINE|L1 25758 NM_022829 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 114.5-54 chr2 185864024 185864248 + 0.833333 NA Intergenic L1M3|LINE|L1 -63985 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 124.167-43 chr2 16608383 16608623 + 0.833333 NA intron (NM_030797, intron 2 of 11) intron (NM_030797, intron 2 of 11) 57331 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 186.167-37 chr7 38586343 38586908 + 0.833333 NA intron (NM_001635, intron 1 of 20) intron (NM_001635, intron 1 of 20) 44748 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 177.333-57 chr6 49645391 49645676 + 0.833333 NA Intergenic AluJb|SINE|Alu -8659 NM_000324 6005 Hs.120950 NM_000324 ENSG00000112077 RHAG CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1 Rh associated glycoprotein protein-coding 177.167-18 chr2 98217431 98217751 + 0.833333 NA intron (NR_144296, intron 13 of 28) intron (NR_144296, intron 13 of 28) 68058 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 146.333-25 chr12 89309255 89309541 + 0.833333 NA Intergenic Intergenic 43103 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 144.667-46 chr15 88945145 88945413 + 0.833333 NA Intergenic AluYh3|SINE|Alu -31900 NM_005928 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 158.833-25 chr18 3786316 3786634 + 0.833333 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 58883 NM_001242765 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 164.5-50 chr6 68816121 68816362 + 0.833333 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 180959 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 236-13 chr2 207840126 207840596 + 0.833333 NA intron (NM_001080475, intron 7 of 7) AluJr|SINE|Alu -70455 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 128.333-83 chr3 123280959 123281187 + 0.833333 NA Intergenic Intergenic 79130 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 179.167-27 chr2 192310450 192310823 + 0.833333 NA Intergenic Intergenic -115703 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 118-50 chr18 37124902 37125167 + 0.833333 NA intron (NR_136303, intron 8 of 13) L1ME1|LINE|L1 -149426 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 162.333-29 chr2 12157686 12157903 + 0.833333 NA intron (NR_110196, intron 2 of 5) L1MB8|LINE|L1 -41336 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 218.333 chr1 107337273 107337672 + 0.833333 NA intron (NM_001113226, intron 2 of 6) L1MB3|LINE|L1 189403 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 246.833-5 chr18 10197574 10198075 + 0.833333 NA Intergenic Intergenic 216546 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 182.5-23 chr2 132579611 132580024 + 0.833333 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 90388 NM_001321234 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 315.333-11 chr8 82436954 82437510 + 0.833333 NA Intergenic Intergenic -474872 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 129.667-9 chr10 92015349 92015592 + 0.833333 NA intron (NM_003972, intron 32 of 37) intron (NM_003972, intron 32 of 37) 91700 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 130-55 chr2 134444142 134444383 + 0.833333 NA intron (NM_001371457, intron 16 of 16) intron (NM_001371457, intron 16 of 16) 190190 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 117.5-75 chr8 133513059 133513232 + 0.833333 NA intron (NM_003033, intron 2 of 8) intron (NM_003033, intron 2 of 8) 58742 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 156.5-16 chr10 80077612 80077859 + 0.833333 NA promoter-TSS (NM_001270370) promoter-TSS (NM_001270370) -911 NM_001270372 80195 Hs.169982 NM_025125 ENSG00000133678 TMEM254 C10orf57|bA369J21.6 transmembrane protein 254 protein-coding 147-79 chr7 8614133 8614506 + 0.833333 NA intron (NM_152745, intron 2 of 2) L1ME4a|LINE|L1 180710 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 171.833-39 chr5 114620431 114620739 + 0.833333 NA intron (NR_130785, intron 3 of 12) L1MEh|LINE|L1 44544 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 180.167-26 chr2 174293854 174294173 + 0.833333 NA Intergenic L1M3|LINE|L1 -32014 NR_038897 285084 Hs.275398 NR_038897 ENSG00000231453 LINC01305 - long intergenic non-protein coding RNA 1305 ncRNA 186.167-39 chr7 90307660 90308043 + 0.833333 NA exon (NM_001160138, exon 21 of 23) exon (NM_001160138, exon 21 of 23) -27372 NR_110085 101927446 Hs.734999 NR_110085 ENSG00000105793 LOC101927446 - uncharacterized LOC101927446 ncRNA 156.167-55 chr7 34783171 34783369 + 0.833333 NA intron (NM_207172, intron 3 of 8) THE1C|LTR|ERVL-MaLR -24998 NR_033665 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 168.667-57 chr3 108482605 108482979 + 0.833333 NA intron (NM_014981, intron 12 of 41) L2a|LINE|L2 46530 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 115.167-90 chr6 19014186 19014421 + 0.833333 NA Intergenic L1MEc|LINE|L1 166177 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 396-5 chr4 69512884 69513639 + 0.833333 NA intron (NM_001297616, intron 1 of 6) L1P3|LINE|L1 12753 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 120.5-53 chr2 192481865 192482311 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -267757 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 184.167-35 chr4 31883886 31884234 + 0.833333 NA Intergenic Intergenic -113319 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 125.667-115 chr8 53448295 53448520 + 0.833333 NA Intergenic L1MB5|LINE|L1 75558 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 218.167-20 chr4 37600834 37601178 + 0.833333 NA intron (NM_001085399, intron 6 of 6) intron (NM_001085399, intron 6 of 6) 16773 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 210.833-9 chr15 63732365 63732673 + 0.833333 NA intron (NM_003922, intron 14 of 77) intron (NM_003922, intron 14 of 77) 101429 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 192-15 chr14 66058521 66059000 + 0.833333 NA Intergenic Intergenic -427611 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 173.833-46 chr5 81656360 81656721 + 0.833333 NA intron (NM_012446, intron 1 of 16) L1PB1|LINE|L1 94713 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 241.667 chr1 190761990 190762544 + 0.833333 NA intron (NR_033922, intron 2 of 4) intron (NR_033922, intron 2 of 4) 137377 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 120.333-107 chr7 1972025 1972351 + 0.833333 NA intron (NM_001013837, intron 15 of 18) L1MD2|LINE|L1 -31617 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 128.667-109 chr8 118505080 118505335 + 0.833333 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -115794 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 155.167-40 chr5 107667669 107667985 + 0.833333 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 3110 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 171.833-6 chr10 17214412 17214715 + 0.833333 NA non-coding (NR_108060, exon 4 of 4) non-coding (NR_108060, exon 4 of 4) 12335 NR_108060 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 228.5-37 chr8 108377400 108377975 + 0.833333 NA Intergenic MamRep38|DNA|hAT -65896 NM_001329493 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 180.333-50 chr5 104207486 104207960 + 0.833333 NA Intergenic L2a|LINE|L2 -644934 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 128.667-2 chr1 55605819 55606104 + 0.833333 NA Intergenic L2c|LINE|L2 339002 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 258.5-7 chr13 91236792 91237222 + 0.833333 NA Intergenic Intergenic -25309 NR_047004 100874150 Hs.711947 NR_047004 LINC00379 - long intergenic non-protein coding RNA 379 ncRNA 190-53 chr5 167266408 167266824 + 0.833333 NA intron (NM_001122679, intron 1 of 29) MIRb|SINE|MIR -98215 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 120.833-7 chr10 74421820 74422093 + 0.833333 NA intron (NM_001369124, intron 6 of 9) L1MC3|LINE|L1 107368 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 113.167 chr1 32304987 32305242 + 0.833333 NA intron (NM_004964, intron 2 of 13) L1ME3D|LINE|L1 13031 NM_004964 3065 Hs.88556 NM_004964 ENSG00000116478 HDAC1 GON-10|HD1|KDAC1|RPD3|RPD3L1 histone deacetylase 1 protein-coding 145-55 chr3 36375237 36375437 + 0.833333 NA Intergenic L2a|LINE|L2 -5150 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 151.833-55 chr8 13708359 13708702 + 0.833333 NA Intergenic MER94|DNA|hAT-Blackjack 78840 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 116.833-65 chr8 143937217 143937456 + 0.833333 NA intron (NM_201379, intron 3 of 31) intron (NM_201379, intron 3 of 31) 2261 NM_201384 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 150.333-75 chr4 70219834 70220118 + 0.833333 NA Intergenic AluSg7|SINE|Alu -6148 NM_152997 260436 Hs.733448 NM_152997 ENSG00000181617 FDCSP C4orf7|FDC-SP follicular dendritic cell secreted protein protein-coding 113.333-74 chr3 67839279 67839519 + 0.833333 NA intron (NR_109992, intron 3 of 6) intron (NR_109992, intron 3 of 6) -152193 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 215.167-8 chr12 11426934 11427278 + 0.833333 NA Intergenic L2|LINE|L2 -31539 NM_006248 653247 Hs.654486 NM_006248 ENSG00000121335 PRB2 IB-9|PRPPRB1|Ps|cP7 proline rich protein BstNI subfamily 2 protein-coding 201.833-20 chr6 83527922 83528261 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 15557 NM_001170423 167681 Hs.98381 NM_153362 ENSG00000146250 PRSS35 C6orf158|dJ223E3.1 serine protease 35 protein-coding 213 chr1 21626646 21626976 + 0.833333 NA intron (NM_001350526, intron 5 of 28) intron (NM_001350526, intron 5 of 28) 25087 NM_001145658 5909 Hs.148178 NM_002885 ENSG00000076864 RAP1GAP RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP RAP1 GTPase activating protein protein-coding 222-9 chr12 42856848 42857275 + 0.833333 NA Intergenic Intergenic 164845 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 185.5-3 chr1 92151064 92151472 + 0.833333 NA Intergenic AluSq2|SINE|Alu -17656 NM_015237 23285 Hs.21554 NM_015237 ENSG00000189195 KIAA1107 - KIAA1107 protein-coding 157.167-30 chr19 52758546 52758871 + 0.833333 NA Intergenic AluSq2|SINE|Alu -23654 NM_001161500 81856 Hs.143951 NM_030972 ENSG00000213020 ZNF611 - zinc finger protein 611 protein-coding 212-6 chr12 21950165 21950584 + 0.833333 NA Intergenic L1MA4|LINE|L1 -13680 NM_020297 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 195.5-13 chr12 48579778 48580097 + 0.833333 NA Intergenic Intergenic -9891 NM_002289 3906 Hs.72938 NM_002289 ENSG00000167531 LALBA LYZG lactalbumin alpha protein-coding 144.667-43 chr15 27745710 27745968 + 0.833333 NA Intergenic MER4D|LTR|ERV1 353476 NM_000275 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 154-91 chr9 102862941 102863195 + 0.833333 NA Intergenic Intergenic -132265 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 113.667-57 chr19 39042245 39042424 + 0.833333 NA Intergenic MER101-int|LTR|ERV1 -9785 NM_178820 126433 Hs.187461 NM_178820 ENSG00000161243 FBXO27 FBG5|Fbx27 F-box protein 27 protein-coding 198-20 chr15 25268490 25268900 + 0.833333 NA TTS (NR_003499) TTS (NR_003499) 178 NR_003499 100036567 NR_003499 SNORD115-47 HBII-52-46|HBII-52-47 small nucleolar RNA, C/D box 115-47 snoRNA 287.5-6 chr16 83604476 83604958 + 0.833333 NA intron (NM_001220489, intron 7 of 12) intron (NM_001220489, intron 7 of 12) 96371 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 115.167-113 chr9 12107780 12108106 + 0.833333 NA Intergenic L1PB1|LINE|L1 -585442 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 192.167-21 chr2 38068555 38068907 + 0.833333 NA 3' UTR (NM_000104, exon 3 of 3) 3' UTR (NM_000104, exon 3 of 3) 7450 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 ASGD6|CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450 family 1 subfamily B member 1 protein-coding 170.833-15 chr2 38296574 38296794 + 0.833333 NA intron (NM_022374, intron 12 of 12) intron (NM_022374, intron 12 of 12) 79846 NM_001330459 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 173.833-44 chr5 14610383 14610685 + 0.833333 NA 3' UTR (NM_019018, exon 8 of 8) 3' UTR (NM_019018, exon 8 of 8) 28742 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 189.833-19 chr2 124183658 124184188 + 0.833333 NA intron (NM_130773, intron 1 of 23) MADE1|DNA|TcMar-Mariner 158636 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 180.833-18 chr18 9514075 9514474 + 0.833333 NA intron (NM_006788, intron 2 of 9) intron (NM_006788, intron 2 of 9) 38761 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 201.833-28 chr9 84032486 84032992 + 0.833333 NA Intergenic L1MA2|LINE|L1 -30704 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 230.333-41 chrX 57457420 57457811 + 0.833333 NA intron (NR_148564, intron 11 of 11) L1PA16|LINE|L1 -134221 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 156.5-87 chr9 13266734 13267212 + 0.833333 NA intron (NM_001330637, intron 1 of 46) intron (NM_001330637, intron 1 of 46) 12591 NM_001261407 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 148.167-39 chr2 85332937 85333253 + 0.833333 NA Intergenic AluSx1|SINE|Alu -5106 NM_001206844 10618 Hs.593382 NM_006464 ENSG00000152291 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 156.333-4 chr1 58617817 58618090 + 0.833333 NA Intergenic Intergenic -40701 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor associated calcium signal transducer 2 protein-coding 150.833-49 chr7 137610442 137610807 + 0.833333 NA intron (NM_001321710, intron 8 of 32) intron (NM_001321710, intron 8 of 32) 235708 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 162.833-9 chr11 78978297 78978563 + 0.833333 NA intron (NM_001098816, intron 6 of 33) MIRb|SINE|MIR -403566 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 154.5-31 chr18 65096107 65096343 + 0.833333 NA Intergenic Intergenic -654027 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 151.667-91 chr8 137275173 137275442 + 0.833333 NA Intergenic Intergenic 138281 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 116.333-72 chr4 141274508 141274662 + 0.833333 NA Intergenic Intergenic 53690 NM_001292002 27309 Hs.120766 NM_014487 ENSG00000109445 ZNF330 HSA6591|NOA36 zinc finger protein 330 protein-coding 150.5-54 chr4 71571947 71572221 + 0.833333 NA TTS (NM_001134742) TTS (NM_001134742) 211995 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 247.5-2 chr1 71829914 71830527 + 0.833333 NA intron (NR_046218, intron 1 of 2) intron (NR_046218, intron 1 of 2) 6792 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 164-37 chr2 200090520 200091128 + 0.833333 NA Intergenic Intergenic -135333 NR_109905 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 241.5-4 chr1 172530551 172531010 + 0.833333 NA Intergenic Intergenic -1569 NM_016227 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 137-84 chr6 67551776 67552035 + 0.833333 NA Intergenic L1M1|LINE|L1 -503446 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 228.833-5 chr14 81032985 81033619 + 0.833333 NA intron (NM_001142626, intron 1 of 8) intron (NM_001142626, intron 1 of 8) 77681 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 143.5-75 chr7 9052105 9052466 + 0.833333 NA Intergenic L1MA9|LINE|L1 -581985 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 123.667-86 chr5 72214001 72214247 + 0.833333 NA Intergenic MER20|DNA|hAT-Charlie 34337 NM_001324255 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 118-55 chr2 107357688 107357929 + 0.833333 NA Intergenic Intergenic -8283 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 247.167-12 chr2 209689465 209690089 + 0.833333 NA intron (NM_001039538, intron 7 of 14) intron (NM_001039538, intron 7 of 14) -82055 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 137.667-28 chr14 63095268 63095447 + 0.833333 NA Intergenic Intergenic -49899 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 221-18 chr2 64105217 64105657 + 0.833333 NA intron (NM_020651, intron 2 of 6) (AC)n|Simple_repeat|Simple_repeat 38983 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 239.333-11 chr17 68254293 68254737 + 0.833333 NA exon (NM_001346482, exon 6 of 8) exon (NM_001346482, exon 6 of 8) -4655 NM_001352903 22901 Hs.437249 NM_014960 ENSG00000141337 ARSG USH4 arylsulfatase G protein-coding 136.167 chr1 23043719 23043957 + 0.833333 NA promoter-TSS (NR_036057) promoter-TSS (NR_036057) -467 NR_036057 100422866 NR_036057 ENSG00000263793 MIR3115 mir-3115 microRNA 3115 ncRNA 255.667-14 chr2 57411227 57411620 + 0.833333 NA Intergenic L1MA2|LINE|L1 -496228 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 134-18 chr10 71086198 71086540 + 0.833333 NA Intergenic Intergenic -126201 NM_170744 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 151.167-19 chr15 79187870 79188071 + 0.833333 NA Intergenic Intergenic -21818 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 162.667-18 chr13 75653523 75653829 + 0.833333 NA intron (NM_001306080, intron 1 of 30) intron (NM_001306080, intron 1 of 30) 17346 NM_001306080 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LMO7b|LOMP LIM domain 7 protein-coding 336.5-4 chr2 151985368 151986135 + 0.833333 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) -11773 NM_001330117 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 145.167-53 chr4 73855835 73856184 + 0.833333 NA Intergenic MIRb|SINE|MIR 2713 NM_002620 5197 Hs.72933 NM_002620 ENSG00000109272 PF4V1 CXCL4L1|CXCL4V1|PF4-ALT|PF4A|SCYB4V1 platelet factor 4 variant 1 protein-coding 265.833-9 chr2 151839674 151840035 + 0.833333 NA intron (NM_001145798, intron 12 of 12) intron (NM_001145798, intron 12 of 12) -11433 NM_012097 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 150-81 chr8 35284898 35285106 + 0.833333 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) 49527 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 241-14 chr22 29047037 29047510 + 0.833333 NA intron (NM_001206998, intron 6 of 8) L1MC4|LINE|L1 14646 NM_015370 25770 Hs.50891 NM_015370 ENSG00000100249 C22orf31 HS747E2A|bK747E2.1 chromosome 22 open reading frame 31 protein-coding 213.833-31 chr5 88876882 88877197 + 0.833333 NA intron (NM_001131005, intron 2 of 10) UCON20|Unknown|Unknown 6145 NM_001364347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 178.167-44 chr7 78726128 78726813 + 0.833333 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -282518 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 170-76 chr8 19364286 19364505 + 0.833333 NA intron (NR_156444, intron 7 of 8) intron (NR_156444, intron 7 of 8) 50419 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 146.667-86 chr7 50264425 50264706 + 0.833333 NA Intergenic Intergenic -39499 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 149.333-42 chr17 40042186 40042507 + 0.833333 NA intron (NR_052017, intron 3 of 24) L1ME2|LINE|L1 12062 NM_014815 9862 Hs.462983 NM_014815 ENSG00000008838 MED24 ARC100|CRSP100|CRSP4|DRIP100|MED5|THRAP4|TRAP100 mediator complex subunit 24 protein-coding 130.333-35 chr15 61193351 61193533 + 0.833333 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 35860 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 188.167-25 chr2 223978229 223978533 + 0.833333 NA intron (NM_001136530, intron 7 of 8) intron (NM_001136530, intron 7 of 8) 20918 NM_022915 65080 Hs.203559 NM_022915 ENSG00000135900 MRPL44 COXPD16|L44MT|MRP-L44 mitochondrial ribosomal protein L44 protein-coding 215.167-20 chr5 141220339 141220665 + 0.833333 NA Intergenic Intergenic -1824 NM_018934 56122 Hs.658497 NM_018934 ENSG00000120327 PCDHB14 PCDH-BETA14 protocadherin beta 14 protein-coding 167.5-57 chr6 146202393 146202734 + 0.833333 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 173365 NM_001278067 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 139-67 chr6 166797438 166797716 + 0.833333 NA intron (NM_001318936, intron 2 of 22) Tigger2a|DNA|TcMar-Tigger 64948 NM_001318936 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 227.833-25 chrX 89113766 89114117 + 0.833333 NA Intergenic Intergenic 366716 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 167.5-39 chr20 46983506 46983906 + 0.833333 NA intron (NM_172110, intron 1 of 13) L1MEg|LINE|L1 88863 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 279-7 chr16 87962342 87962752 + 0.833333 NA intron (NM_001173542, intron 1 of 12) intron (NM_001173542, intron 1 of 12) 2676 NM_001173542 54971 Hs.461705 NM_017869 ENSG00000172530 BANP BEND1|SMAR1|SMARBP1 BTG3 associated nuclear protein protein-coding 185.167-38 chr5 119105568 119105894 + 0.833333 NA intron (NM_001290322, intron 4 of 42) AluSp|SINE|Alu 34644 NM_001290321 1657 Hs.181042 NM_005509 ENSG00000172869 DMXL1 - Dmx like 1 protein-coding 286.333-10 chr5 20414347 20414690 + 0.833333 NA intron (NM_001349558, intron 1 of 15) L1PA17|LINE|L1 108967 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 164.833-13 chr12 48918363 48918698 + 0.833333 NA intron (NM_001286957, intron 5 of 7) intron (NM_001286957, intron 5 of 7) 6458 NM_001143781 51303 Hs.655103 NM_016594 ENSG00000134285 FKBP11 FKBP19 FKBP prolyl isomerase 11 protein-coding 163.167 chr1 68588107 68588665 + 0.833333 NA Intergenic Intergenic -91304 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 125.167-45 chr2 188391070 188391233 + 0.833333 NA intron (NM_016315, intron 2 of 11) L1PB3|LINE|L1 93659 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 171.833-41 chr6 62096236 62096530 + 0.833333 NA intron (NR_146874, intron 2 of 13) L1MA6|LINE|L1 189842 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 118-73 chr22 25042150 25042325 + 0.833333 NA intron (NM_001145206, intron 3 of 10) MER102b|DNA|hAT-Charlie 14263 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 165.5-20 chr14 37324229 37324597 + 0.833333 NA intron (NM_138731, intron 10 of 13) L1ME3|LINE|L1 126476 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 158.667-31 chr16 25534880 25535217 + 0.833333 NA Intergenic MER102b|DNA|hAT-Charlie -156911 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 315.167-7 chr15 63590090 63590475 + 0.833333 NA intron (NR_034080, intron 2 of 2) HAL1ME|LINE|L1 -7105 NM_001367809 283807 Hs.631163 NM_203373 ENSG00000197361 FBXL22 Fbl22 F-box and leucine rich repeat protein 22 protein-coding 249.667-16 chr19 30697574 30697977 + 0.833333 NA intron (NM_001352260, intron 5 of 5) intron (NM_001352260, intron 5 of 5) 325391 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 135.667-104 chr7 133005019 133005379 + 0.833333 NA intron (NM_001317177, intron 3 of 8) MIRc|SINE|MIR 29716 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 223-2 chr10 56703903 56704278 + 0.833333 NA Intergenic L1ME1|LINE|L1 -342817 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 117.667-128 chr8 139996474 139996652 + 0.833333 NA intron (NM_001160372, intron 18 of 22) L1MEf|LINE|L1 103972 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 167.667-33 chr16 85120750 85121287 + 0.833333 NA Intergenic AluY|SINE|Alu -8546 NM_198491 339145 Hs.125713 NM_198491 ENSG00000153789 FAM92B - family with sequence similarity 92 member B protein-coding 179.333-24 chr18 22018562 22018946 + 0.833333 NA Intergenic L2c|LINE|L2 150214 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 236.5-10 chr12 10769316 10769792 + 0.833333 NA intron (NR_120463, intron 2 of 6) intron (NR_120463, intron 2 of 6) 19320 NR_120463 101928162 Hs.112950 NR_120463 ENSG00000256888 LINC02366 - long intergenic non-protein coding RNA 2366 ncRNA 147.333-35 chr18 60300297 60300596 + 0.833333 NA Intergenic Intergenic 72329 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 160.833-25 chr2 101046052 101046452 + 0.833333 NA intron (NM_001102426, intron 5 of 19) intron (NM_001102426, intron 5 of 19) 43963 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 250.167-4 chr14 86155836 86156169 + 0.833333 NA Intergenic Intergenic 221324 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 158.833-21 chr14 58145369 58145642 + 0.833333 NA intron (NM_001320173, intron 1 of 4) intron (NM_001320173, intron 1 of 4) 6708 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 307.5-2 chr10 74298469 74299141 + 0.833333 NA intron (NM_001369124, intron 3 of 9) AluJo|SINE|Alu 122042 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 179-33 chr22 49272976 49273510 + 0.833333 NA Intergenic Intergenic 270223 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 213.833-14 chr16 87086494 87086869 + 0.833333 NA Intergenic Intergenic 28897 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 262.333-2 chr1 200776522 200777061 + 0.833333 NA intron (NM_001297707, intron 2 of 17) intron (NM_001297707, intron 2 of 17) 37219 NM_001297707 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 435.333-2 chr13 32673128 32674238 + 0.833333 NA intron (NM_015032, intron 8 of 34) intron (NM_015032, intron 8 of 34) 87231 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 160-66 chr7 48709903 48710223 + 0.833333 NA Intergenic AluJo|SINE|Alu -214484 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 187.333-19 chr13 66933103 66933414 + 0.833333 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) -44131 NR_046636 100874086 Hs.577908 NR_046636 ENSG00000225263 PCDH9-AS3 - PCDH9 antisense RNA 3 ncRNA 304.667-7 chr14 61555256 61555768 + 0.833333 NA TTS (NR_110417) TTS (NR_110417) 14682 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 162.833-25 chr2 200219509 200219941 + 0.833333 NA Intergenic Intergenic -86154 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 116.833-64 chr8 78530148 78530356 + 0.833333 NA intron (NM_181839, intron 1 of 2) MIRc|SINE|MIR 13912 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 134.333-104 chr8 131043093 131043358 + 0.833333 NA Intergenic Intergenic -2316 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 121.167-79 chr7 3772217 3772453 + 0.833333 NA intron (NM_152744, intron 4 of 44) L1M4c|LINE|L1 -357350 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 131.833-13 chr14 50782811 50783031 + 0.833333 NA intron (NM_016350, intron 5 of 28) intron (NM_016350, intron 5 of 28) -38876 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 247.5-14 chr17 64479934 64480499 + 0.833333 NA intron (NM_007215, intron 7 of 7) intron (NM_007215, intron 7 of 7) 16838 NM_007215 11232 Hs.437009 NM_007215 ENSG00000256525 POLG2 HP55|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB DNA polymerase gamma 2, accessory subunit protein-coding 212.667-11 chr11 55794911 55795240 + 0.833333 NA promoter-TSS (NM_001004735) promoter-TSS (NM_001004735) -481 NM_001004735 219436 Hs.553622 NM_001004735 ENSG00000186113 OR5D14 OR11-141|OR11-150 olfactory receptor family 5 subfamily D member 14 protein-coding 194.833-25 chr5 118781505 118781820 + 0.833333 NA Intergenic LOR1-int|LTR|ERV1 185474 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 255-16 chr4 110017727 110018130 + 0.833333 NA Intergenic L1MEg|LINE|L1 105045 NM_001963 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 165.833-9 chr10 60265372 60265782 + 0.833333 NA intron (NM_001204403, intron 6 of 43) intron (NM_001204403, intron 6 of 43) 124298 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 164.167-57 chr7 49483678 49483982 + 0.833333 NA Intergenic Intergenic -289808 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 115.833-4 chr1 216961429 216961797 + 0.833333 NA intron (NM_001134285, intron 1 of 8) intron (NM_001134285, intron 1 of 8) -21940 NM_001243512 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 304.667-3 chr10 56295988 56296423 + 0.833333 NA Intergenic Intergenic 65054 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 148.333-40 chr2 18237837 18238022 + 0.833333 NA Intergenic Intergenic 322724 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 178.5-10 chr10 89728066 89728407 + 0.833333 NA intron (NM_016195, intron 17 of 32) intron (NM_016195, intron 17 of 32) 26646 NM_001284259 9585 Hs.240 NM_016195 ENSG00000138182 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 195.833-11 chr16 35706908 35707388 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -39404 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 199.167-39 chr7 41851228 41851673 + 0.833333 NA Intergenic MIRb|SINE|MIR -148360 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 217.5-16 chr16 53655807 53656284 + 0.833333 NA intron (NM_001127897, intron 14 of 24) intron (NM_001127897, intron 14 of 24) 47814 NM_001328423 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 127-23 chr13 33827452 33827682 + 0.833333 NA intron (NM_002915, intron 4 of 8) intron (NM_002915, intron 4 of 8) 9418 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 208.333-11 chr11 111474208 111474676 + 0.833333 NA intron (NM_017589, intron 5 of 5) L1ME3A|LINE|L1 -36160 NR_147706 728196 Hs.363156 NR_147706 ENSG00000286028 LOC728196 - uncharacterized LOC728196 ncRNA 313.667 chr1 57839745 57840393 + 0.833333 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -20512 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 249.5-27 chr5 116181544 116182292 + 0.833333 NA intron (NR_146220, intron 6 of 7) L2a|LINE|L2 -73825 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 130.833-34 chr2 177803673 177803886 + 0.833333 NA intron (NM_001077197, intron 10 of 20) L1PB4|LINE|L1 84977 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 170.5-23 chr17 48841325 48841704 + 0.833333 NA intron (NM_001261395, intron 1 of 11) intron (NM_001261395, intron 1 of 11) 10479 NM_005831 10241 Hs.514920 NM_005831 ENSG00000136436 CALCOCO2 NDP52 calcium binding and coiled-coil domain 2 protein-coding 215.667-47 chr7 36793206 36793514 + 0.833333 NA Intergenic Intergenic -68811 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 122-52 chr3 98266475 98266686 + 0.833333 NA Intergenic L1M1|LINE|L1 2336 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 254.833-3 chr13 47687462 47687900 + 0.833333 NA Intergenic Intergenic 244941 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 150.167-64 chr7 144720553 144720893 + 0.833333 NA intron (NM_001042482, intron 3 of 7) intron (NM_001042482, intron 3 of 7) 18175 NR_146936 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 280-19 chr8 97310326 97310713 + 0.833333 NA intron (NR_125390, intron 2 of 2) AluSz6|SINE|Alu -32591 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 154.833-52 chr6 64978187 64978683 + 0.833333 NA intron (NM_001292009, intron 14 of 43) Tigger1|DNA|TcMar-Tigger -322983 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 131.667-90 chr4 57699352 57699549 + 0.833333 NA Intergenic Intergenic 273578 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 146.5-45 chr2 75510752 75510967 + 0.833333 NA intron (NM_032181, intron 3 of 3) L1ME4b|LINE|L1 -13209 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 119-43 chr17 53624094 53624262 + 0.833333 NA Intergenic L1MC4|LINE|L1 -198749 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 268-2 chr13 48430593 48431082 + 0.833333 NA intron (NM_005767, intron 1 of 6) FRAM|SINE|Alu -3929 NM_001162497 10161 Hs.123464 NM_005767 ENSG00000139679 LPAR6 ARWH1|HYPT8|LAH3|P2RY5|P2Y5 lysophosphatidic acid receptor 6 protein-coding 157-39 chr2 156246403 156246643 + 0.833333 NA intron (NR_110250, intron 1 of 3) MamRTE1|LINE|RTE-BovB 8408 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 293.167-8 chr4 30633932 30634393 + 0.833333 NA Intergenic Charlie1a|DNA|hAT-Charlie -86207 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 249.667-48 chr8 139300913 139301674 + 0.833333 NA Intergenic Intergenic -387252 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 115.5-38 chr15 66881118 66881328 + 0.833333 NA Intergenic L2c|LINE|L2 75292 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 130.667-22 chr13 74973249 74973584 + 0.833333 NA Intergenic MIRb|SINE|MIR 266965 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 197.667-32 chr2 157790749 157791214 + 0.833333 NA intron (NM_001111067, intron 3 of 10) intron (NM_001111067, intron 3 of 10) 47649 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 220.833-8 chr17 64572154 64572650 + 0.833333 NA intron (NM_022739, intron 9 of 18) intron (NM_022739, intron 9 of 18) 65425 NM_001316990 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 119.5-110 chrX 69904201 69904368 + 0.833333 NA intron (NM_001005609, intron 1 of 7) L1MA4|LINE|L1 -118573 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 190.5-24 chr17 20069649 20069927 + 0.833333 NA intron (NM_001243439, intron 1 of 14) L1MB7|LINE|L1 -17234 NM_001033553 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 198-40 chr3 168328027 168328591 + 0.833333 NA intron (NR_021485, intron 3 of 15) intron (NR_021485, intron 3 of 15) 78787 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 219.167 chr1 190791176 190791701 + 0.833333 NA intron (NR_033922, intron 2 of 4) MER74C|LTR|ERVL 166548 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 180-50 chr7 2949764 2950053 + 0.833333 NA intron (NM_001324281, intron 3 of 25) L1MB8|LINE|L1 93959 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 288.667-7 chr3 54506327 54506877 + 0.833333 NA intron (NM_018398, intron 5 of 37) intron (NM_018398, intron 5 of 37) 133255 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 156.5-33 chr15 70602850 70603063 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL -12591 NR_126481 104548972 NR_126481 ENSG00000281264 SALRNA3 SAL-RNA3|XLOC_025918 senescence associated long non-coding RNA 3 ncRNA 150.5-7 chr10 30391912 30392111 + 0.833333 NA Intergenic Charlie19a|DNA|hAT-Charlie -20104 NR_120609 729668 Hs.652158 NR_003524 GOLGA2P6 - GOLGA2 pseudogene 6 pseudo 223.667-33 chr9 107314019 107314605 + 0.833333 NA intron (NM_001244724, intron 5 of 9) L1PB4|LINE|L1 29543 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 133.833-4 chr10 11061912 11062142 + 0.833333 NA intron (NM_001326345, intron 1 of 13) AluSx1|SINE|Alu 43271 NM_001326345 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 246.667-9 chr15 62929702 62930270 + 0.833333 NA Intergenic L1ME3B|LINE|L1 106029 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 296.167-11 chr8 132258611 132258975 + 0.833333 NA intron (NM_004519, intron 1 of 14) L1M4|LINE|L1 -153528 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 244.667-24 chr7 7035034 7035423 + 0.833333 NA Intergenic L1MA9|LINE|L1 31817 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 211-31 chr5 64309137 64309525 + 0.833333 NA intron (NM_001113561, intron 5 of 7) intron (NM_001113561, intron 5 of 7) 143488 NM_001323292 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 154.167-57 chr6 1841385 1841644 + 0.833333 NA intron (NM_001253846, intron 7 of 10) intron (NM_001253846, intron 7 of 10) 231599 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 234.167-16 chr6 66080995 66081359 + 0.833333 NA Intergenic L1PA15|LINE|L1 293298 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 232.167-5 chr10 35120271 35120728 + 0.833333 NA Intergenic Intergenic -6342 NM_001881 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 164-72 chr8 86335811 86336047 + 0.833333 NA Intergenic L1ME1|LINE|L1 -6618 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 169.333-24 chr14 45104506 45104874 + 0.833333 NA intron (NM_017922, intron 5 of 13) intron (NM_017922, intron 5 of 13) -6185 NR_003691 100113389 Hs.712501 NR_003691 ENSG00000239043 SNORD127 - small nucleolar RNA, C/D box 127 snoRNA 133.333-116 chr7 100796599 100796774 + 0.833333 NA intron (NR_111919, intron 44 of 46) AluSx1|SINE|Alu -30183 NM_001363494 56996 Hs.521087 NM_020246 ENSG00000146828 SLC12A9 CCC6|CIP1|WO3.3|hCCC6 solute carrier family 12 member 9 protein-coding 229.167-7 chr11 15754228 15754625 + 0.833333 NA Intergenic L1MCa|LINE|L1 110541 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 168.167-22 chr15 99269870 99270242 + 0.833333 NA intron (NR_135755, intron 2 of 8) intron (NR_135755, intron 2 of 8) 12531 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 125.667-119 chr8 88882672 88882947 + 0.833333 NA Intergenic L2a|LINE|L2 -555326 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 164.333-33 chr2 165392986 165393413 + 0.833333 NA TTS (NM_001371247) TTS (NM_001371247) -76499 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 183.833-9 chr13 33715826 33716208 + 0.833333 NA Intergenic L1M1|LINE|L1 -39223 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 186.667-31 chr2 14243536 14243868 + 0.833333 NA intron (NR_103814, intron 2 of 3) MIRc|SINE|MIR 157256 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 240.666-2 chr11 93168389 93168897 + 0.833333 NA intron (NM_152313, intron 6 of 10) intron (NM_152313, intron 6 of 10) 28783 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 148.667-14 chr12 50926767 50927109 + 0.833333 NA intron (NM_014033, intron 1 of 1) intron (NM_014033, intron 1 of 1) 1923 NM_014033 25840 Hs.711113 NM_014033 ENSG00000185432 METTL7A AAM-B|AAMB methyltransferase like 7A protein-coding 143.833-59 chrX 37993625 37993879 + 0.833333 NA Intergenic LTR37A|LTR|ERV1 2973 NM_012274 25763 Hs.122959 NM_012274 ENSG00000187516 HYPM CXorf27|HIP17 huntingtin interacting protein M protein-coding 191.833-27 chr5 130437722 130438314 + 0.833333 NA Intergenic L1M1|LINE|L1 533553 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 365.333-3 chr7 49964692 49965369 + 0.833333 NA intron (NM_001159878, intron 7 of 7) L1MEc|LINE|L1 128216 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 118.333-74 chr3 96036297 96036522 + 0.833333 NA Intergenic L1MC1|LINE|L1 -323555 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 242.833-17 chr9 103704590 103704930 + 0.833333 NA Intergenic MER49|LTR|ERV1 -294949 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 177-33 chr2 106615742 106615980 + 0.833333 NA Intergenic L1MC2|LINE|L1 128497 NM_001368307 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 123.667-123 chrX 125853744 125853929 + 0.833333 NA Intergenic AluSx|SINE|Alu -255926 NR_110409 101928495 Hs.545998 NR_110409 ENSG00000237208 LOC101928495 - uncharacterized LOC101928495 ncRNA 140.833-23 chr17 28611779 28612014 + 0.833333 NA intron (NM_001174103, intron 7 of 11) intron (NM_001174103, intron 7 of 11) 2289 NM_001174103 124923 Hs.729077 NM_144610 ENSG00000167524 RSKR SGK494 ribosomal protein S6 kinase related protein-coding 146.5-5 chr1 200928556 200928752 + 0.833333 NA promoter-TSS (NR_147176) promoter-TSS (NR_147176) -290 NR_147176 647215 Hs.576504 NR_147176 ENSG00000233217 MROH3P C1orf81 maestro heat like repeat family member 3, pseudogene pseudo 215.167-13 chr2 17396126 17396587 + 0.833333 NA Intergenic L1MC5a|LINE|L1 122084 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 177.833-12 chr15 68003927 68004218 + 0.833333 NA Intergenic Intergenic -50107 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 238.833-11 chr5 99944769 99945365 + 0.833333 NA Intergenic Intergenic 411077 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 149.667-72 chr7 86383452 86383716 + 0.833333 NA Intergenic Intergenic -260325 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 170.167-26 chr18 67614245 67614509 + 0.833333 NA intron (NR_033921, intron 1 of 4) MLT1E2|LTR|ERVL-MaLR -97657 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 193-22 chr18 61671901 61672232 + 0.833333 NA Intergenic MamSINE1|SINE|tRNA-RTE -76110 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 175.833-24 chr2 138137800 138138090 + 0.833333 NA Intergenic L2a|LINE|L2 36061 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 147.167-26 chr18 1229765 1230155 + 0.833333 NA Intergenic L1MB7|LINE|L1 129669 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 292.167-7 chr5 106971061 106971435 + 0.833333 NA intron (NR_104671, intron 1 of 3) intron (NR_104671, intron 1 of 3) 39766 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 121-51 chr2 176792430 176792660 + 0.833333 NA Intergenic Intergenic 154791 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 204.667-9 chr10 121877185 121877618 + 0.833333 NA intron (NM_001001976, intron 7 of 11) intron (NM_001001976, intron 7 of 11) 50630 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 176.833-27 chr5 74759525 74760029 + 0.833333 NA intron (NR_104006, intron 3 of 19) intron (NR_104006, intron 3 of 19) 7340 NM_001281302 84340 Hs.277154 NM_032380 ENSG00000164347 GFM2 EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 G elongation factor mitochondrial 2 protein-coding 149.833-44 chr6 47951903 47952210 + 0.833333 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 116633 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 159.167-15 chr12 60201874 60202326 + 0.833333 NA Intergenic Intergenic 512730 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 261.667-9 chr11 72309995 72310385 + 0.833333 NA intron (NM_030813, intron 8 of 16) intron (NM_030813, intron 8 of 16) -66014 NM_005169 401 Hs.731115 NM_005169 ENSG00000165462 PHOX2A ARIX|CFEOM2|FEOM2|NCAM2|PMX2A paired like homeobox 2A protein-coding 120.333-18 chr10 65851127 65851576 + 0.833333 NA Intergenic L1PB1|LINE|L1 279926 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 131.667-91 chr4 59493508 59493737 + 0.833333 NA Intergenic Intergenic 480049 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 145.5-10 chr12 17566430 17567112 + 0.833333 NA Intergenic L1M4|LINE|L1 22307 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 136.667-90 chr6 152140359 152140750 + 0.833333 NA intron (NM_182961, intron 139 of 145) FLAM_A|SINE|Alu 27733 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 136.5-34 chr14 68292149 68292611 + 0.833333 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 336407 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 116.833-10 chr11 17231121 17231362 + 0.833333 NA Intergenic L1MB3|LINE|L1 -23255 NM_002645 5286 Hs.175343 NM_002645 ENSG00000011405 PIK3C2A CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 188.167-39 chr5 81306704 81306984 + 0.833333 NA intron (NM_001131035, intron 2 of 5) intron (NM_001131035, intron 2 of 5) 5257 NM_001131035 84240 Hs.15536 NM_032280 ENSG00000131732 ZCCHC9 PPP1R41 zinc finger CCHC-type containing 9 protein-coding 208.833-2 chr1 46129998 46130326 + 0.833333 NA intron (NM_001303427, intron 1 of 9) intron (NM_001303427, intron 1 of 9) 511 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 143.833-45 chr7 10765326 10765595 + 0.833333 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) 14484 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 247.5-23 chr3 152335120 152335584 + 0.833333 NA intron (NM_001314057, intron 2 of 11) intron (NM_001314057, intron 2 of 11) 5638 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 188.333-5 chr10 83748492 83748782 + 0.833333 NA Intergenic L1MD|LINE|L1 -71548 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 200-67 chr9 133494409 133494770 + 0.833333 NA Intergenic Intergenic -15490 NM_001145099 11182 Hs.244378 NM_017585 ENSG00000160326 SLC2A6 GLUT6|GLUT9|HSA011372 solute carrier family 2 member 6 protein-coding 155.167-21 chr2 15394451 15394997 + 0.833333 NA intron (NR_052013, intron 27 of 50) intron (NR_052013, intron 27 of 50) 166610 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 146.833-31 chr2 185767308 185767724 + 0.833333 NA intron (NM_173651, intron 13 of 22) L1MA9|LINE|L1 -27039 NR_110217 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 309-7 chr22 27894930 27895507 + 0.833333 NA intron (NM_001284278, intron 6 of 11) intron (NM_001284278, intron 6 of 11) 23996 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 209.833-8 chr14 22316797 22317269 + 0.833333 NA Intergenic L3|LINE|CR1 115720 NR_148363 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 179.667-55 chr8 104030183 104030615 + 0.833333 NA intron (NR_145710, intron 24 of 29) intron (NR_145710, intron 24 of 29) -192936 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 177.667-66 chr7 81418587 81418900 + 0.833333 NA Intergenic Intergenic 143076 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 164.167-47 chr4 34062498 34062900 + 0.833333 NA Intergenic Intergenic -22806 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 192.167-13 chr14 57860947 57861352 + 0.833333 NA intron (NM_001352012, intron 1 of 8) L2a|LINE|L2 3850 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 177.5-8 chr1 119761738 119762060 + 0.833333 NA intron (NM_005518, intron 2 of 9) L1ME4b|LINE|L1 7033 NM_001166107 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 151.833-8 chr10 85168792 85169105 + 0.833333 NA Intergenic L1MEf|LINE|L1 29957 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 133.5-27 chr16 31520763 31521037 + 0.833333 NA Intergenic Intergenic -7000 NM_001318221 51327 Hs.274309 NM_016633 ENSG00000169877 AHSP EDRF|ERAF alpha hemoglobin stabilizing protein protein-coding 244.167 chr10 5447349 5447707 + 0.833333 NA intron (NM_005863, intron 1 of 9) intron (NM_005863, intron 1 of 9) 919 NM_005863 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 201.333-14 chr14 40757807 40758102 + 0.833333 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR -196757 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 152.5-43 chr3 156293351 156293558 + 0.833333 NA intron (NM_172159, intron 1 of 13) intron (NM_172159, intron 1 of 13) 2417 NM_001308222 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 188.333-30 chr2 19148996 19149341 + 0.833333 NA Intergenic L1M5|LINE|L1 -122197 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 183.5-40 chr21 35416303 35416688 + 0.833333 NA intron (NR_073512, intron 2 of 2) MER5A|DNA|hAT-Charlie 164269 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 164.333-60 chr5 125121013 125121238 + 0.833333 NA intron (NR_109882, intron 2 of 5) L2a|LINE|L2 84294 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 133.833-30 chr15 69243667 69243994 + 0.833333 NA intron (NM_001324092, intron 2 of 3) AluJr|SINE|Alu -55082 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 159.333-76 chrX 87754536 87754805 + 0.833333 NA Intergenic HERV4_I-int|LTR|ERV1 236868 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 137-89 chr7 93772252 93772498 + 0.833333 NA Intergenic Intergenic 55447 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 151-13 chr12 68296935 68297173 + 0.833333 NA intron (NM_001368282, intron 12 of 13) intron (NM_001368282, intron 12 of 13) 35308 NM_020128 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 140.167-36 chr20 32737215 32737524 + 0.833333 NA intron (NM_053041, intron 1 of 8) AluSx1|SINE|Alu 6639 NM_001099339 149951 Hs.408427 NM_053041 ENSG00000149600 COMMD7 C20orf92|dJ1085F17.3 COMM domain containing 7 protein-coding 124.667-86 chr4 41136073 41136256 + 0.833333 NA intron (NM_173075, intron 2 of 16) intron (NM_173075, intron 2 of 16) 78378 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 163.667-18 chr13 39621031 39621457 + 0.833333 NA Intergenic L1PBa|LINE|L1 -18051 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 321.667-6 chr4 53194295 53194796 + 0.833333 NA intron (NM_152540, intron 4 of 8) intron (NM_152540, intron 4 of 8) 171516 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 214-24 chr2 172479084 172479459 + 0.833333 NA intron (NM_001365530, intron 9 of 25) L1ME4b|LINE|L1 -13249 NR_157573 101929947 Hs.710861 NR_157573 ITGA6-AS1 - ITGA6 antisense RNA 1 ncRNA 190.333-4 chr1 99408721 99409103 + 0.833333 NA Intergenic Intergenic 78892 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 234.5-12 chr19 53285188 53285496 + 0.833333 NA TTS (NR_046365) TTS (NR_046365) 3052 NR_046365 646508 Hs.574588 NM_001195187 ENSG00000189348 FAM90A27P - family with sequence similarity 90 member A27, pseudogene pseudo 160.5-10 chr13 112853306 112853689 + 0.833333 NA intron (NM_032189, intron 18 of 28) intron (NM_032189, intron 18 of 28) -98766 NR_046661 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 255.167-2 chr10 50567305 50567797 + 0.833333 NA intron (NM_147156, intron 2 of 10) MER102c|DNA|hAT-Charlie 56405 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 149-66 chr5 106411750 106412074 + 0.833333 NA Intergenic L1ME3A|LINE|L1 599102 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 168.667-54 chr3 57845011 57845234 + 0.833333 NA intron (NM_001304420, intron 3 of 21) intron (NM_001304420, intron 3 of 21) -44792 NM_001311178 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 150.833-58 chr9 36467505 36467873 + 0.833333 NA Intergenic Intergenic -66491 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 174-60 chr8 142264579 142264947 + 0.833333 NA intron (NM_001366901, intron 12 of 13) L1MEd|LINE|L1 66407 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 179.167-45 chr7 42646103 42646521 + 0.833333 NA Intergenic Intergenic 60135 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 283.167-7 chr3 65025895 65026502 + 0.833333 NA Intergenic L2c|LINE|L2 -338198 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 213-27 chr6 168543776 168544147 + 0.833333 NA intron (NM_001166412, intron 5 of 12) intron (NM_001166412, intron 5 of 12) 102777 NM_001166412 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 224-27 chr3 21643707 21644147 + 0.833333 NA intron (NM_024697, intron 2 of 7) intron (NM_024697, intron 2 of 7) 101138 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 145.833-50 chr3 99264489 99264820 + 0.833333 NA Intergenic Intergenic -362959 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 132.833-60 chr7 52113685 52113913 + 0.833333 NA Intergenic Tigger3a|DNA|TcMar-Tigger -720543 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 115.833-36 chr2 161392501 161392677 + 0.833333 NA intron (NM_005805, intron 9 of 11) intron (NM_005805, intron 9 of 11) -23708 NM_006593 10716 Hs.210862 NM_006593 ENSG00000136535 TBR1 IDDAS|TBR-1|TES-56 T-box brain transcription factor 1 protein-coding 144.333-30 chr14 58724786 58725053 + 0.833333 NA Intergenic L1MA4A|LINE|L1 86082 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 210-2 chr10 23617278 23617770 + 0.833333 NA Intergenic Intergenic -77203 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 118.5-8 chr1 111828660 111828896 + 0.833333 NA intron (NM_172198, intron 2 of 6) intron (NM_172198, intron 2 of 6) 28127 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 164.333-17 chr12 75292685 75292918 + 0.833333 NA intron (NR_149161, intron 7 of 11) intron (NR_149161, intron 7 of 11) 37523 NM_032606 84698 Hs.733835 NM_032606 ENSG00000180881 CAPS2 UG0636c06 calcyphosine 2 protein-coding 249.667-34 chr5 31074304 31074869 + 0.833333 NA Intergenic THE1A-int|LTR|ERVL-MaLR -119100 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 135.167-13 chr10 70827489 70827901 + 0.833333 NA intron (NM_003901, intron 2 of 14) L1ME3|LINE|L1 11747 NM_003901 8879 Hs.499984 NM_003901 ENSG00000166224 SGPL1 NPHS14|S1PL|SPL sphingosine-1-phosphate lyase 1 protein-coding 317.833-4 chr9 102851813 102852596 + 0.833333 NA Intergenic AluSx|SINE|Alu -143129 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 145.667-32 chr14 72659084 72659395 + 0.833333 NA intron (NM_001280542, intron 8 of 10) intron (NM_001280542, intron 8 of 10) 142419 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 118.667-20 chr10 90326679 90326917 + 0.833333 NA Intergenic Intergenic 214007 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 192.833-9 chr11 116014799 116015198 + 0.833333 NA Intergenic L1MA9|LINE|L1 -254798 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 160.333-43 chr4 48311087 48311622 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -30175 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 162.833-40 chr5 123205798 123206114 + 0.833333 NA Intergenic MIRb|SINE|MIR -115640 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 160.167-28 chr2 137406697 137406942 + 0.833333 NA intron (NM_001316349, intron 13 of 27) intron (NM_001316349, intron 13 of 27) 521113 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 157.667-8 chr1 219567271 219567545 + 0.833333 NA Intergenic Intergenic -10084 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 157.667-46 chr3 16234217 16234488 + 0.833333 NA Intergenic LTR16C|LTR|ERVL 17576 NM_001319052 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 251 chr1 95035348 95035761 + 0.833333 NA intron (NR_131032, intron 1 of 2) intron (NR_131032, intron 1 of 2) -26042 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 231.333-37 chr9 114978646 114978967 + 0.833333 NA Intergenic L3|LINE|CR1 -48211 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A TNF superfamily member 8 protein-coding 273.833-7 chr3 146954569 146954932 + 0.833333 NA Intergenic L1ME3|LINE|L1 32827 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 136.333-94 chr8 50067216 50067503 + 0.833333 NA intron (NR_135798, intron 1 of 15) (ATTTAA)n|Simple_repeat|Simple_repeat -96772 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 206.667-35 chr4 139215066 139215559 + 0.833333 NA Intergenic Intergenic -38094 NM_001371336 122.333-17 chr10 121843843 121844257 + 0.833333 NA intron (NM_001001976, intron 8 of 11) L1MC3|LINE|L1 83981 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 133.833-66 chr5 172485907 172486168 + 0.833333 NA Intergenic L2b|LINE|L2 -31512 NM_001017995 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 123.167-5 chr1 114940610 114940766 + 0.833333 NA intron (NM_001282542, intron 23 of 30) L1M5|LINE|L1 85825 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 180-53 chr8 5460147 5460469 + 0.833333 NA Intergenic Intergenic -465394 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 282.333-4 chr11 80941505 80942030 + 0.833333 NA Intergenic Intergenic -178964 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 251-26 chr6 155675762 155676127 + 0.833333 NA Intergenic Intergenic 161100 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 208-36 chr7 42053530 42053813 + 0.833333 NA intron (NM_000168, intron 4 of 14) intron (NM_000168, intron 4 of 14) 183538 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 185.833-11 chr13 46618215 46618559 + 0.833333 NA intron (NM_001164213, intron 1 of 18) intron (NM_001164213, intron 1 of 18) 65217 NM_001164211 23143 Hs.507971 NM_015116 ENSG00000136141 LRCH1 CHDC1|NP81 leucine rich repeats and calponin homology domain containing 1 protein-coding 170.5-62 chr6 76199821 76200292 + 0.833333 NA Intergenic L1MEh|LINE|L1 -127378 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 197.5-43 chr4 150147523 150147795 + 0.833333 NA intron (NM_001040260, intron 2 of 15) intron (NM_001040260, intron 2 of 15) 69214 NM_001040261 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 271.5-3 chr11 100334401 100334975 + 0.833333 NA intron (NM_001243270, intron 20 of 23) L1PB1|LINE|L1 -352600 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 197.333-28 chr20 3356892 3357177 + 0.833333 NA intron (NM_001009984, intron 7 of 36) intron (NM_001009984, intron 7 of 36) 50628 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 186.167-2 chr1 48562194 48562498 + 0.833333 NA intron (NM_001323575, intron 11 of 12) intron (NM_001323575, intron 11 of 12) -90138 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 116-77 chr5 83426014 83426199 + 0.833333 NA Intergenic L1MEc|LINE|L1 -45568 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 237-24 chr8 115182061 115182697 + 0.833333 NA Intergenic Intergenic 485634 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 172.333-11 chr10 71662072 71662628 + 0.833333 NA intron (NM_022124, intron 13 of 67) intron (NM_022124, intron 13 of 67) 57428 NM_001164375 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 132.333-64 chr21 14106900 14107230 + 0.833333 NA Intergenic Intergenic 99884 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 204.833-33 chr8 106969420 106969786 + 0.833333 NA Intergenic L1MA8|LINE|L1 -199359 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 233.166-2 chr4 60411297 60411826 + 0.833333 NA Intergenic Intergenic -511058 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 131-28 chr19 36046438 36046720 + 0.833333 NA TTS (NM_001290056) TTS (NM_001290056) 7706 NM_152658 199745 Hs.350209 NM_152658 ENSG00000161277 THAP8 - THAP domain containing 8 protein-coding 128.333-122 chr9 27176375 27176658 + 0.833333 NA intron (NM_001290077, intron 6 of 21) intron (NM_001290077, intron 6 of 21) 67375 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 234.5-10 chr15 81536569 81537089 + 0.833333 NA Intergenic L1MA2|LINE|L1 -162616 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 272.167-12 chr14 64582364 64582939 + 0.833333 NA intron (NM_172365, intron 8 of 11) MER33|DNA|hAT-Charlie 32690 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 141-60 chr3 131731335 131731527 + 0.833333 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) -228460 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 144.167-59 chr5 122656951 122657159 + 0.833333 NA intron (NR_109881, intron 8 of 11) intron (NR_109881, intron 8 of 11) -72455 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 114.167-60 chr22 31216007 31216293 + 0.833333 NA intron (NM_005569, intron 1 of 15) L2a|LINE|L2 3852 NM_005569 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 227.667-6 chr11 58440818 58441245 + 0.833333 NA promoter-TSS (NM_001004733) promoter-TSS (NM_001004733) -858 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 199.5-7 chr11 43766379 43766729 + 0.833333 NA intron (NM_016142, intron 3 of 10) intron (NM_016142, intron 3 of 10) 85816 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 150-53 chr3 163207471 163207873 + 0.833333 NA intron (NR_033945, intron 2 of 6) L1M5|LINE|L1 95629 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 174-58 chr7 95683545 95683877 + 0.833333 NA Intergenic L1ME4b|LINE|L1 -87195 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 361.5-3 chr13 105706025 105706708 + 0.833333 NA promoter-TSS (NR_120418) promoter-TSS (NR_120418) -464 NR_120418 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 221.833-4 chr11 105766001 105766327 + 0.833333 NA intron (NR_046356, intron 3 of 16) intron (NR_046356, intron 3 of 16) 155458 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 212.167-14 chr3 153009309 153009563 + 0.833333 NA Intergenic Intergenic -152790 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 207.667-4 chr11 94018116 94018508 + 0.833333 NA Intergenic Intergenic -3042 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 121.667-69 chr4 30668493 30668810 + 0.833333 NA Intergenic MLT1A|LTR|ERVL-MaLR -51718 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 180.333-27 chr19 49784482 49784944 + 0.833333 NA intron (NM_130787, intron 4 of 22) AluJb|SINE|Alu -7153 NR_106857 102465479 NR_106857 ENSG00000276270 MIR6799 hsa-mir-6799 microRNA 6799 ncRNA 126-101 chr9 83999263 83999566 + 0.833333 NA intron (NM_001358293, intron 2 of 3) MIR|SINE|MIR 18609 NM_001358293 80010 Hs.726327 NM_024945 ENSG00000178966 RMI1 BLAP75|C9orf76|FAAP75 RecQ mediated genome instability 1 protein-coding 207.667-31 chr3 128741508 128741906 + 0.833333 NA intron (NM_004637, intron 1 of 5) intron (NM_004637, intron 1 of 5) 15571 NM_004637 7879 Hs.684374 NM_004637 ENSG00000075785 RAB7A PRO2706|RAB7 RAB7A, member RAS oncogene family protein-coding 117.167-6 chr1 210977863 210978081 + 0.833333 NA intron (NM_002238, intron 6 of 10) L1M4a1|LINE|L1 155402 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 116.667-92 chr6 37412543 37412816 + 0.833333 NA Intergenic L1ME1|LINE|L1 -20542 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 155.833-33 chr2 233037190 233037480 + 0.833333 NA Intergenic L1ME3|LINE|L1 4663 NM_005383 4759 Hs.532681 NM_005383 ENSG00000115488 NEU2 SIAL2 neuraminidase 2 protein-coding 294.5-10 chr4 71892318 71892803 + 0.833333 NA Intergenic L1PA8|LINE|L1 -87040 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 143.833-24 chr22 28894093 28894383 + 0.833333 NA intron (NM_001206998, intron 1 of 8) AluJb|SINE|Alu 10666 NM_001206998 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 267.333-7 chr11 128787912 128788510 + 0.833333 NA intron (NM_001167681, intron 6 of 9) AluSx|SINE|Alu 54258 NM_000220 3758 Hs.527830 NM_000220 ENSG00000151704 KCNJ1 KIR1.1|ROMK|ROMK1 potassium voltage-gated channel subfamily J member 1 protein-coding 136.5-19 chr11 35572219 35572444 + 0.833333 NA Intergenic L2a|LINE|L2 -42031 NM_001282675 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 152.667-49 chr22 27855880 27856131 + 0.833333 NA intron (NM_001284278, intron 10 of 11) intron (NM_001284278, intron 10 of 11) -54249 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 153.5-60 chr5 167159114 167159362 + 0.833333 NA intron (NM_001122679, intron 1 of 29) AluSx1|SINE|Alu 9163 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 122.167-16 chr13 20276184 20276427 + 0.833333 NA Intergenic L1PB4|LINE|L1 -43910 NM_001110220 10804 Hs.511757 NM_006783 ENSG00000121742 GJB6 CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2 gap junction protein beta 6 protein-coding 212.667-48 chr8 124431186 124431630 + 0.833333 NA Intergenic SVA_D|Retroposon|SVA -19412 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 334.5-7 chr2 17683067 17683642 + 0.833333 NA intron (NM_024624, intron 23 of 26) L3|LINE|CR1 70456 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 119.833-51 chr20 39935442 39935601 + 0.833333 NA Intergenic Intergenic -68940 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 187.5-32 chr3 175588108 175588473 + 0.833333 NA intron (NM_207015, intron 10 of 13) intron (NM_207015, intron 10 of 13) 188043 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 233.5-7 chr14 62231518 62231902 + 0.833333 NA Intergenic THE1B-int|LTR|ERVL-MaLR -91737 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 197-29 chr20 42810882 42811223 + 0.833333 NA intron (NM_133170, intron 2 of 31) L1ME3Cz|LINE|L1 125569 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 154.833-33 chr2 184517083 184517324 + 0.833333 NA Intergenic Intergenic -81326 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 130.333-47 chr2 15348000 15348233 + 0.833333 NA intron (NR_052013, intron 35 of 50) intron (NR_052013, intron 35 of 50) 213218 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 137.333-22 chr13 73277819 73277999 + 0.833333 NA Intergenic L1MB2|LINE|L1 218904 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 152.5-40 chr3 111153181 111153412 + 0.833333 NA intron (NM_001243288, intron 7 of 8) intron (NM_001243288, intron 7 of 8) 81480 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 271.5-18 chr4 134452248 134452717 + 0.833333 NA intron (NR_147155, intron 1 of 3) intron (NR_147155, intron 1 of 3) 28614 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 139.333-31 chr12 129901385 129901557 + 0.833333 NA intron (NM_133448, intron 1 of 8) intron (NM_133448, intron 1 of 8) 2554 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 126.5-28 chr14 84427584 84427832 + 0.833333 NA Intergenic Charlie17|DNA|hAT-Charlie -844224 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 113.333-45 chr16 77404696 77404916 + 0.833333 NA intron (NM_199355, intron 3 of 22) L2c|LINE|L2 30228 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 160.667-73 chr6 144584422 144584699 + 0.833333 NA intron (NM_007124, intron 50 of 73) intron (NM_007124, intron 50 of 73) 178905 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 143.833-33 chr4 153516056 153516403 + 0.833333 NA intron (NM_001131007, intron 3 of 34) L1ME4a|LINE|L1 49869 NM_001131007 23240 Hs.732450 NM_015196 ENSG00000121210 TMEM131L KIAA0922 transmembrane 131 like protein-coding 264.833-6 chr13 77270058 77270608 + 0.833333 NA exon (NM_015057, exon 6 of 83) exon (NM_015057, exon 6 of 83) 56761 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|PHR1|Phr MYC binding protein 2 protein-coding 122.333-92 chr5 55409272 55409453 + 0.833333 NA intron (NM_015360, intron 22 of 26) Looper|DNA|PiggyBac 99564 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 236-19 chr4 54589400 54589895 + 0.833333 NA Intergenic MIR|SINE|MIR 17484 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 225-31 chr6 40869621 40870072 + 0.833333 NA Intergenic LTR39|LTR|ERV1 153434 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 281.833-7 chr2 226171793 226172158 + 0.833333 NA intron (NR_046102, intron 4 of 6) intron (NR_046102, intron 4 of 6) 29181 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 223.667-4 chr10 77484671 77485140 + 0.833333 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 134033 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 142.333-24 chr12 42949785 42950080 + 0.833333 NA Intergenic L2c|LINE|L2 -205383 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 238.167-18 chr5 74321078 74321504 + 0.833333 NA Intergenic Intergenic -1195 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 147.833-9 chr11 19386441 19386788 + 0.833333 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 35890 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 275.833 chr13 94606181 94606592 + 0.833333 NA intron (NM_180989, intron 2 of 8) intron (NM_180989, intron 2 of 8) 4529 NM_180989 160897 Hs.439363 NM_180989 ENSG00000152749 GPR180 ITR G protein-coupled receptor 180 protein-coding 135.167-46 chr2 72628875 72629255 + 0.833333 NA intron (NR_135774, intron 6 of 19) L3|LINE|CR1 196968 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 143.167-51 chr3 117891414 117891610 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -200587 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 223.333-25 chr3 98185697 98186267 + 0.833333 NA Intergenic HUERS-P3b-int|LTR|ERV1 17282 NM_001005515 403274 Hs.554713 NM_001005515 ENSG00000233412 OR5H15 - olfactory receptor family 5 subfamily H member 15 protein-coding 211.167-36 chr8 90303616 90303909 + 0.833333 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 82274 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 197.167-8 chr11 22563667 22564020 + 0.833333 NA Intergenic L1P4b|LINE|L1 61998 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF FA complementation group F protein-coding 186.833-35 chr5 20105129 20105438 + 0.833333 NA intron (NM_001291956, intron 2 of 14) AluSq2|SINE|Alu -117083 NM_001349561 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 172.333-31 chr18 51595254 51595578 + 0.833333 NA Intergenic Intergenic 203374 NR_040075 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 167.5-6 chr1 191994781 191995017 + 0.833333 NA Intergenic Intergenic -163563 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 169.167-2 chr1 226073041 226073318 + 0.833333 NA TTS (NM_002107) TTS (NM_002107) -10396 NR_146920 105373113 Hs.149726 NR_146920 LINC01703 lncPARP1 long intergenic non-protein coding RNA 1703 ncRNA 273-11 chr5 59086230 59086823 + 0.833333 NA intron (NM_006203, intron 5 of 14) L2c|LINE|L2 -47050 NM_001197222 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 138.167-15 chr12 84292482 84292721 + 0.833333 NA Intergenic MER103C|DNA|hAT-Charlie 620198 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 184.333-69 chr8 132416192 132416683 + 0.833333 NA intron (NM_004519, intron 1 of 14) AluSx1|SINE|Alu 30825 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 150.5-58 chr4 136314875 136315175 + 0.833333 NA Intergenic Intergenic -401345 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 157-13 chr10 84812312 84812699 + 0.833333 NA Intergenic HUERS-P1-int|LTR|ERV1 386400 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 369.833-2 chr2 147942002 147942844 + 0.833333 NA intron (NM_001190881, intron 7 of 10) L1MD|LINE|L1 78314 NM_001190882 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 154.167-47 chr3 137703070 137703422 + 0.833333 NA Intergenic Intergenic -61069 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 145.334-5 chr20 44589798 44590357 + 0.833333 NA intron (NM_007066, intron 2 of 3) intron (NM_007066, intron 2 of 3) 7498 NM_001281445 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 123.167-74 chr4 89698829 89699103 + 0.833333 NA Intergenic Intergenic -137435 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 146.333-97 chr8 120297677 120297984 + 0.833333 NA intron (NM_021110, intron 35 of 47) MER119|DNA|hAT-Charlie 147320 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 133-44 chr2 65253792 65254052 + 0.833333 NA intron (NM_001005386, intron 6 of 9) intron (NM_001005386, intron 6 of 9) 26227 NM_001005386 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 142.5-13 chr10 115661245 115661577 + 0.833333 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 533378 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 140.333-23 chr14 59709655 59709944 + 0.833333 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -62779 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 183.167-22 chr18 73709183 73709416 + 0.833333 NA Intergenic Intergenic 384358 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 296.167-4 chr2 72219582 72220625 + 0.833333 NA intron (NR_135773, intron 19 of 21) MIRc|SINE|MIR -72241 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 197.5-52 chr8 76824389 76824679 + 0.833333 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -141259 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 239.167-10 chr4 146119790 146120212 + 0.833333 NA intron (NR_038331, intron 1 of 5) L1MC3|LINE|L1 1912 NR_038331 100505545 Hs.122199 NR_038331 ENSG00000248809 LINC01095 - long intergenic non-protein coding RNA 1095 ncRNA 266-17 chr4 70178956 70179581 + 0.833333 NA Intergenic Intergenic -17259 NM_017855 54959 Hs.143811 NM_017855 ENSG00000109205 ODAM APIN odontogenic, ameloblast associated protein-coding 127-21 chr12 18864759 18864970 + 0.833333 NA Intergenic Intergenic 126745 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 208.333-39 chr6 90138888 90139395 + 0.833333 NA intron (NM_021813, intron 4 of 8) intron (NM_021813, intron 4 of 8) 157702 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 219.833-19 chr7 16844905 16845208 + 0.833333 NA Intergenic L2b|LINE|L2 36927 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 135.667-89 chr5 120367095 120367410 + 0.833333 NA Intergenic Intergenic -97026 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 264.5-8 chr3 39424845 39425197 + 0.833333 NA Intergenic L2a|LINE|L2 13967 NR_002324 6044 Hs.449909 NR_002324 ENSG00000202363 SNORA62 E2|E2-1|RNE2|RNU108 small nucleolar RNA, H/ACA box 62 snoRNA 137.5-56 chr3 30773107 30773298 + 0.833333 NA intron (NM_207359, intron 14 of 14) Charlie7a|DNA|hAT-Charlie 121459 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 188.833-39 chr8 61919107 61919476 + 0.833333 NA Intergenic LTR33|LTR|ERVL 29452 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 159.167-11 chr10 110950569 110951098 + 0.833333 NA intron (NR_136749, intron 1 of 7) L1MA9|LINE|L1 -13578 NR_026715 644511 Hs.632083 NR_026715 ENSG00000234118 RPL13AP6 RPL13A_7_1096|bA348N5.5 ribosomal protein L13a pseudogene 6 pseudo 127.833-73 chr7 130434110 130434347 + 0.833333 NA intron (NR_046443, intron 1 of 10) MIRb|SINE|MIR 6788 NM_018718 95681 Hs.368315 NM_018718 ENSG00000106477 CEP41 JBTS15|TSGA14 centrosomal protein 41 protein-coding 215.5-4 chr1 224222398 224222739 + 0.833333 NA intron (NR_110668, intron 1 of 2) intron (NR_110668, intron 1 of 2) 2955 NR_110668 101927164 Hs.710128 NR_110668 ENSG00000237101 LOC101927164 - uncharacterized LOC101927164 ncRNA 125.333-104 chr6 103535373 103535745 + 0.833333 NA Intergenic Intergenic 1323987 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 126.667-10 chr10 23526768 23526976 + 0.833333 NA Intergenic AluJb|SINE|Alu 87603 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 212.667-42 chr6 162040815 162041286 + 0.833333 NA intron (NM_013988, intron 2 of 8) AluSx|SINE|Alu 570073 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 131.167-39 chr2 13231571 13231902 + 0.833333 NA Intergenic L1MC4|LINE|L1 -224723 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 224-5 chr10 64624080 64624495 + 0.833333 NA Intergenic L1ME2|LINE|L1 -201241 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 196-25 chr16 6130291 6130707 + 0.833333 NA intron (NM_018723, intron 1 of 15) L1MEf|LINE|L1 110796 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 186.5-47 chr3 190519389 190519660 + 0.833333 NA intron (NM_001364879, intron 1 of 10) MIRb|SINE|MIR 5439 NR_157353 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 114.5-64 chr3 38799018 38799227 + 0.833333 NA Intergenic Intergenic -5112 NM_001293306 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 181-27 chr17 20053385 20053829 + 0.833333 NA intron (NM_001243439, intron 1 of 14) MLT1F1|LTR|ERVL-MaLR -33415 NM_001033553 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 164-33 chr2 119866127 119866431 + 0.833333 NA intron (NM_002830, intron 3 of 26) intron (NM_002830, intron 3 of 26) 106357 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 201-14 chr13 61461895 61462333 + 0.833333 NA Intergenic Intergenic -34168 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 115.167-22 chr10 103383872 103384126 + 0.833333 NA intron (NM_139052, intron 7 of 9) intron (NM_139052, intron 7 of 9) 10402 NR_031707 100302174 NR_031707 ENSG00000283867 MIR1307 MIRN1307|hsa-mir-1307|mir-1307 microRNA 1307 ncRNA 118.333-95 chr5 121667122 121667520 + 0.833333 NA Intergenic (GCA)n|Simple_repeat|Simple_repeat -184561 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 129.667-55 chr2 183521264 183521484 + 0.833333 NA Intergenic Intergenic 396931 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 148.5-68 chr7 108118191 108118454 + 0.833333 NA intron (NM_001318048, intron 2 of 17) L1MD2|LINE|L1 12039 NM_007356 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 211.333-45 chr6 40910124 40910593 + 0.833333 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 112922 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 218.667-37 chr6 161036367 161036900 + 0.833333 NA intron (NM_005922, intron 2 of 26) intron (NM_005922, intron 2 of 26) 44864 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 230.5-4 chr13 63807750 63808026 + 0.833333 NA Intergenic L2a|LINE|L2 25165 NM_001370368 647264 Hs.714690 NM_001370368 ENSG00000285566 LOC647264 - keratin-associated protein 21-1 protein-coding 156.167-38 chr20 40072298 40072512 + 0.833333 NA Intergenic L1MA2|LINE|L1 67944 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 158.333-40 chr2 55244496 55244743 + 0.833333 NA intron (NM_001005369, intron 11 of 16) L1MB3|LINE|L1 10455 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 137.333-6 chr1 166194072 166194273 + 0.833333 NA Intergenic L2c|LINE|L2 -27417 NR_135199 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 139.5-64 chr7 4237061 4237244 + 0.833333 NA intron (NM_001079653, intron 15 of 19) AluJo|SINE|Alu -102315 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 160.667-48 chr20 17439091 17439450 + 0.833333 NA intron (NM_002594, intron 8 of 11) AluJb|SINE|Alu 92109 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 189.833-10 chr15 96455278 96455564 + 0.833333 NA Intergenic Intergenic 121656 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 219.333-25 chr3 102695896 102696380 + 0.833333 NA Intergenic LTR29|LTR|ERV1 261123 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 162.5-16 chr12 38043659 38044085 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -272902 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 174.333-11 chr12 25190564 25190864 + 0.833333 NA intron (NM_001352063, intron 1 of 13) L1MD3|LINE|L1 4446 NM_001352067 55259 Hs.407771 NM_018272 ENSG00000118307 CASC1 LAS1|PPP1R54 cancer susceptibility 1 protein-coding 162.5-42 chr22 17515310 17515570 + 0.833333 NA intron (NM_001290046, intron 8 of 18) L1ME4a|LINE|L1 -47999 NM_001303484 83733 Hs.282982 NM_031481 ENSG00000182902 SLC25A18 GC2 solute carrier family 25 member 18 protein-coding 133.667-2 chr1 41782131 41782377 + 0.833333 NA intron (NM_024503, intron 1 of 8) L1MB3|LINE|L1 136668 NM_024503 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 133.333-87 chr4 40615281 40615455 + 0.833333 NA intron (NM_001371114, intron 1 of 5) AluJb|SINE|Alu 14496 NM_001098634 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 141.667-15 chr11 74921661 74921905 + 0.833333 NA intron (NM_001270380, intron 7 of 14) intron (NM_001270380, intron 7 of 14) 27308 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 168.333-5 chr10 110142847 110143169 + 0.833333 NA Intergenic Intergenic -64597 NM_130439 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 157.667-73 chr8 130210242 130210500 + 0.833333 NA intron (NM_001362925, intron 5 of 29) Charlie1|DNA|hAT-Charlie 86162 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 184.167-29 chr2 80847052 80847357 + 0.833333 NA Intergenic Intergenic 533825 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 214.833-15 chr2 20002916 20003499 + 0.833333 NA exon (NM_002381, exon 3 of 8) exon (NM_002381, exon 3 of 8) 9461 NM_002381 4148 Hs.656199 NM_002381 ENSG00000132031 MATN3 DIPOA|EDM5|HOA|OADIP|OS2 matrilin 3 protein-coding 189.333-39 chr4 41974663 41975006 + 0.833333 NA Intergenic Intergenic -6922 NM_001029955 285429 Hs.213307 NM_001029955 ENSG00000182308 DCAF4L1 WDR21B DDB1 and CUL4 associated factor 4 like 1 protein-coding 157.333-55 chr4 187232424 187232979 + 0.833333 NA Intergenic Intergenic 30715 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 317.667-3 chr20 43125104 43125717 + 0.833333 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 64496 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 213.5-15 chr2 43649055 43649495 + 0.833333 NA intron (NM_172069, intron 2 of 29) intron (NM_172069, intron 2 of 29) 12015 NM_172069 130271 Hs.164162 NM_172069 ENSG00000152527 PLEKHH2 PLEKHH1L pleckstrin homology, MyTH4 and FERM domain containing H2 protein-coding 294.167-10 chr7 96537793 96538309 + 0.833333 NA intron (NR_163953, intron 2 of 5) L1MCa|LINE|L1 -34528 NR_163948 149.333-58 chr2 228152236 228152485 + 0.833333 NA intron (NM_030623, intron 1 of 10) L1MEd|LINE|L1 29285 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 183.667-12 chr10 27799529 27799944 + 0.833333 NA Intergenic Intergenic -53917 NM_173576 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 124.333-82 chr5 74116028 74116305 + 0.833333 NA Intergenic Intergenic 192159 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 160.167-39 chr22 29410211 29410481 + 0.833333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -21763 NM_001127 162 Hs.368794 NM_001127 ENSG00000100280 AP1B1 ADTB1|AP105A|BAM22|CLAPB2 adaptor related protein complex 1 subunit beta 1 protein-coding 139.5-48 chr4 111429296 111429511 + 0.833333 NA Intergenic Intergenic -568756 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 161-39 chr3 41056405 41056629 + 0.833333 NA Intergenic L1MD3|LINE|L1 -142988 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 150.667-38 chr15 78185701 78185958 + 0.833333 NA intron (NM_015162, intron 5 of 13) L1MEf|LINE|L1 36467 NM_005530 3419 Hs.591110 NM_005530 ENSG00000166411 IDH3A - isocitrate dehydrogenase (NAD(+)) 3 alpha protein-coding 143.833-8 chr12 12040772 12040961 + 0.833333 NA Intergenic L1MD1|LINE|L1 -8995 NM_001370268 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 120.167-84 chr9 101712373 101712566 + 0.833333 NA intron (NM_133445, intron 1 of 8) intron (NM_133445, intron 1 of 8) 26111 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 295.333-4 chr16 13439614 13440151 + 0.833333 NA Intergenic Intergenic -480275 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 176.667-34 chr2 61418695 61419054 + 0.833333 NA intron (NM_014709, intron 2 of 79) intron (NM_014709, intron 2 of 79) -1497 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 130.333-90 chr8 78069404 78069663 + 0.833333 NA Intergenic LTR8|LTR|ERV1 -446807 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 162.5-34 chr2 157424527 157424742 + 0.833333 NA intron (NM_004288, intron 6 of 7) AluJo|SINE|Alu 19455 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 149.167-8 chr11 25557908 25558147 + 0.833333 NA Intergenic L1PB2|LINE|L1 -631096 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 179.167 chr1 2064195 2064443 + 0.833333 NA intron (NM_002744, intron 4 of 17) L1MB3|LINE|L1 -9143 NM_001350806 5590 Hs.496255 NM_002744 ENSG00000067606 PRKCZ PKC-ZETA|PKC2 protein kinase C zeta protein-coding 235.167-10 chr18 69528355 69528663 + 0.833333 NA intron (NM_152721, intron 1 of 7) intron (NM_152721, intron 1 of 7) 58578 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 124.833-20 chr14 60834195 60834417 + 0.833333 NA intron (NM_002431, intron 6 of 7) L1PA7|LINE|L1 99545 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 165.333-25 chr15 95032581 95032944 + 0.833333 NA Intergenic Intergenic 177399 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 199.333-38 chr7 12779352 12779801 + 0.833333 NA Intergenic Intergenic 91943 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 198.333-10 chr14 39248330 39248705 + 0.833333 NA intron (NM_001329214, intron 4 of 28) HAL1|LINE|L1 14602 NM_001329214 4253 Hs.287694 NM_005930 ENSG00000150527 MIA2 CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI MIA SH3 domain ER export factor 2 protein-coding 199-21 chr4 38789811 38790185 + 0.833333 NA Intergenic HAL1|LINE|L1 -7008 NM_030956 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 176.167-12 chr13 95140831 95141299 + 0.833333 NA intron (NM_001105515, intron 19 of 20) intron (NM_001105515, intron 19 of 20) -69279 NR_145733 109616987 NR_145733 SNORD13G - small nucleolar RNA, C/D box 13G snoRNA 273-16 chr8 51958002 51958417 + 0.833333 NA Intergenic MER66B|LTR|ERV1 -59023 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 141-88 chr8 137786524 137786811 + 0.833333 NA Intergenic Intergenic 296878 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 125.667-110 chr6 165179497 165179891 + 0.833333 NA Intergenic Intergenic 129911 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 148.833-36 chr20 53529850 53530209 + 0.833333 NA Intergenic MIR|SINE|MIR -22741 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 238.333-5 chr11 5155757 5156258 + 0.833333 NA Intergenic L2|LINE|L2 -3638 NM_012375 23538 Hs.553520 NM_012375 ENSG00000182070 OR52A1 HPFH1OR olfactory receptor family 52 subfamily A member 1 protein-coding 293-8 chr7 123484662 123485185 + 0.833333 NA intron (NR_104244, intron 7 of 13) intron (NR_104244, intron 7 of 13) 48025 NR_104244 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 186.333-8 chr1 227137419 227137964 + 0.833333 NA intron (NM_001366019, intron 10 of 36) L1ME3|LINE|L1 180801 NM_001366010 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 196.5-27 chr4 60901397 60901847 + 0.833333 NA Intergenic LTR33A|LTR|ERVL -20997 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 146.833-52 chr5 82362931 82363182 + 0.833333 NA Intergenic Intergenic 83594 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 222.167-28 chr4 93021817 93022263 + 0.833333 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 717641 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 120.833-6 chr10 72174972 72175186 + 0.833333 NA intron (NM_001369110, intron 5 of 8) intron (NM_001369110, intron 5 of 8) 40877 NM_001369089 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 158.5-73 chr6 125036621 125037147 + 0.833333 NA intron (NM_152553, intron 3 of 8) (TTTATTA)n|Simple_repeat|Simple_repeat 53516 NM_152553 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 114.167-33 chr14 65275448 65275728 + 0.833333 NA Intergenic Tigger13a|DNA|TcMar-Tigger -53241 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 228.667-22 chr2 95693843 95694127 + 0.833333 NA Intergenic (T)n|Simple_repeat|Simple_repeat 101984 NM_138800 129868 Hs.232026 NM_138800 ENSG00000144015 TRIM43 TRIM43A tripartite motif containing 43 protein-coding 169-49 chr6 41666073 41666462 + 0.833333 NA Intergenic AluSz|SINE|Alu 27799 NM_001300805 4188 Hs.520119 NM_005586 ENSG00000112559 MDFI I-MF|I-mfa MyoD family inhibitor protein-coding 232.5-38 chr8 68487330 68487719 + 0.833333 NA intron (NR_146186, intron 4 of 12) MIR3|SINE|MIR -156033 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 199-23 chr4 88290828 88291305 + 0.833333 NA intron (NR_134237, intron 1 of 3) intron (NR_134237, intron 1 of 3) 6136 NR_134238 105369192 Hs.733660 NR_134236 ENSG00000246375 PPM1K-DT - PPM1K divergent transcript ncRNA 319.5-6 chr7 26826302 26826929 + 0.833333 NA intron (NM_003930, intron 4 of 12) L2c|LINE|L2 31108 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 251.167-4 chr15 91810358 91810762 + 0.833333 NA Intergenic L1MC1|LINE|L1 -43148 NM_013272 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 169.167-8 chr12 654956 655199 + 0.833333 NA intron (NM_016533, intron 1 of 3) L1MC1|LINE|L1 8368 NM_016533 4815 Hs.655804 NM_016533 ENSG00000171840 NINJ2 - ninjurin 2 protein-coding 136.333-14 chr10 119951050 119951350 + 0.833333 NA Intergenic Intergenic -7313 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 198.833-28 chr8 113551640 113551992 + 0.833333 NA Intergenic Intergenic -114877 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 115.833-64 chr6 74380901 74381065 + 0.833333 NA intron (NR_110856, intron 2 of 3) L1PA11|LINE|L1 311532 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 199.167-32 chr5 26251152 26251613 + 0.833333 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 787204 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 125.833-20 chr14 41295718 41295968 + 0.833333 NA Intergenic HAL1b|LINE|L1 -311013 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 242.167-5 chr10 11730007 11730351 + 0.833333 NA Intergenic MER52A|LTR|ERV1 -12203 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 129-16 chr10 98157881 98158062 + 0.833333 NA intron (NM_001351011, intron 3 of 10) intron (NM_001351011, intron 3 of 10) 23314 NM_001256619 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 161.667-22 chr11 25709473 25709740 + 0.833333 NA Intergenic Intergenic -479517 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 148-49 chr3 42884605 42884914 + 0.833333 NA Intergenic MER83B|LTR|ERV1 -8880 NM_004391 1582 Hs.447793 NM_004391 ENSG00000180432 CYP8B1 CP8B|CYP12 cytochrome P450 family 8 subfamily B member 1 protein-coding 159-68 chr9 113840851 113841134 + 0.833333 NA Intergenic Intergenic -35290 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 142.833-70 chr7 17541059 17541348 + 0.833333 NA intron (NR_110013, intron 1 of 3) L2a|LINE|L2 17706 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 176.5-67 chr8 135823097 135823481 + 0.833333 NA Intergenic MIRc|SINE|MIR 365833 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 129-66 chr4 83457964 83458264 + 0.833333 NA intron (NM_001297770, intron 2 of 3) intron (NM_001297770, intron 2 of 3) 2056 NM_016067 51023 Hs.334772 NM_016067 ENSG00000163319 MRPS18C CGI-134|MRP-S18-1|MRP-S18-c|MRPS18-1|S18mt-c|mrps18-c mitochondrial ribosomal protein S18C protein-coding 133-75 chr5 146906013 146906318 + 0.833333 NA intron (NM_001271900, intron 2 of 10) Charlie5|DNA|hAT-Charlie 13341 NR_047115 100874361 Hs.193825 NR_047115 ENSG00000249553 PPP2R2B-IT1 - PPP2R2B intronic transcript 1 ncRNA 226.833-16 chr4 167873851 167874175 + 0.833333 NA Intergenic Intergenic -218524 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 201.833-14 chr5 24076290 24076627 + 0.833333 NA intron (NR_131245, intron 4 of 4) L2b|LINE|L2 125110 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 147.167-15 chr11 24434267 24434586 + 0.833333 NA Intergenic Intergenic -62627 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 193.833-3 chr1 107852351 107852646 + 0.833333 NA intron (NM_006113, intron 2 of 26) L1ME4a|LINE|L1 -44725 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 231.667-25 chr3 124833330 124833658 + 0.833333 NA intron (NM_001354766, intron 5 of 13) L2c|LINE|L2 53871 NM_002213 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 261.5-9 chr14 42885582 42885921 + 0.833333 NA Intergenic Intergenic 1278895 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 165-17 chr14 48920225 48920552 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger 665992 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 127.833-7 chr10 38529251 38529469 + 0.833333 NA Intergenic Intergenic 101214 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 147.667-10 chr10 25298129 25298417 + 0.833333 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -121997 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 183.833-46 chr9 98153720 98154028 + 0.833333 NA intron (NM_003389, intron 2 of 11) L1MEd|LINE|L1 19018 NM_003389 7464 Hs.113094 NM_003389 ENSG00000106789 CORO2A CLIPINB|IR10|WDR2 coronin 2A protein-coding 217.833-10 chr16 6179086 6179384 + 0.833333 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 159532 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 204.333-21 chr14 63496866 63497215 + 0.833333 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 11198 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 240.167-8 chr16 21015602 21016423 + 0.833333 NA intron (NM_001347886, intron 41 of 61) AluSx1|SINE|Alu 114750 NR_161432 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 189.167-16 chr14 64705117 64705469 + 0.833333 NA intron (NM_001308147, intron 1 of 16) intron (NM_001308147, intron 1 of 16) 869 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 189.833-5 chr14 49765753 49766058 + 0.833333 NA Intergenic Charlie1a|DNA|hAT-Charlie -2248 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 231.167-18 chr3 138499932 138500448 + 0.833333 NA exon (NM_001288966, exon 16 of 16) exon (NM_001288966, exon 16 of 16) 65574 NM_001322834 83850 Hs.477711 NM_031913 ENSG00000158220 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin 3 protein-coding 169-17 chr15 61825759 61826007 + 0.833333 NA Intergenic Intergenic 95965 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 293.167 chr10 23181748 23182241 + 0.833333 NA Intergenic Intergenic -10318 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 171.167 chr1 87687420 87687744 + 0.833333 NA Intergenic L2c|LINE|L2 -315927 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 302.5-10 chr5 57266651 57267346 + 0.833333 NA Intergenic MER5B|DNA|hAT-Charlie 52924 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 142.667-81 chr5 64138525 64138807 + 0.833333 NA Intergenic L1MB3|LINE|L1 -27177 NM_178532 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 155.667-30 chr18 1394042 1394550 + 0.833333 NA Intergenic Intergenic -34667 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 155.5-64 chr9 99129112 99129508 + 0.833333 NA intron (NM_001130916, intron 2 of 7) intron (NM_001130916, intron 2 of 7) 24197 NM_004612 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 180.5-13 chr11 109737898 109738234 + 0.833333 NA Intergenic MIRb|SINE|MIR 315876 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 236-25 chr8 49383054 49383465 + 0.833333 NA Intergenic Intergenic 128921 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 136.667-51 chr21 31026743 31026932 + 0.833333 NA Intergenic L1ME3C|LINE|L1 11639 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 140.833-35 chr2 168612481 168612872 + 0.833333 NA intron (NM_001256126, intron 3 of 10) intron (NM_001256126, intron 3 of 10) 29733 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 173.5-58 chr8 144849352 144849719 + 0.833333 NA TTS (NM_001081003) TTS (NM_001081003) 3513 NM_001081004 28991 Hs.493218 NM_014066 ENSG00000170619 COMMD5 HCARG|HT002 COMM domain containing 5 protein-coding 145.667-84 chr5 53874826 53875167 + 0.833333 NA Intergenic Intergenic -55314 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 268.333-6 chr2 67789665 67790265 + 0.833333 NA Intergenic L1ME4a|LINE|L1 35597 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 142.167-22 chr13 85307917 85308292 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR -55499 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 226.333-32 chr5 7783317 7783675 + 0.833333 NA intron (NM_020546, intron 18 of 24) intron (NM_020546, intron 18 of 24) 67637 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 122.167-6 chr10 36791325 36791537 + 0.833333 NA Intergenic L1MA3|LINE|L1 -334426 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 133.833-26 chr14 80829170 80829738 + 0.833333 NA intron (NM_152446, intron 13 of 24) FRAM|SINE|Alu 112284 NR_157142 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 142.833-41 chr2 154096097 154096501 + 0.833333 NA intron (NM_052917, intron 3 of 12) intron (NM_052917, intron 3 of 12) 151905 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 289-4 chr2 195971376 195971922 + 0.833333 NA intron (NM_018897, intron 16 of 64) L2c|LINE|L2 97188 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 155.667-60 chr5 14216606 14217074 + 0.833333 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 73498 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 157-76 chr7 108798982 108799387 + 0.833333 NA Intergenic Intergenic 85403 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 293.5-8 chr3 99889777 99890341 + 0.833333 NA intron (NM_001042459, intron 4 of 4) L1MEd|LINE|L1 -13856 NM_014890 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 191.5-37 chr4 58579127 58579596 + 0.833333 NA Intergenic MER2|DNA|TcMar-Tigger -43033 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 231.167-3 chr10 27509407 27509819 + 0.833333 NA intron (NM_001256415, intron 1 of 5) intron (NM_001256415, intron 1 of 5) 5309 NR_046172 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 166.167-6 chr10 53799770 53799973 + 0.833333 NA Intergenic Intergenic -686359 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 173.333-68 chr8 13781849 13782110 + 0.833333 NA Intergenic Intergenic 152289 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 174.333-12 chr12 37982365 37982649 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -334267 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 119.167-27 chr16 30553523 30553724 + 0.833333 NA TTS (NM_001172679) TTS (NM_001172679) 4751 NM_001172679 92595 Hs.132227 NM_033410 ENSG00000169951 ZNF764 - zinc finger protein 764 protein-coding 180.667-19 chr14 31307609 31307950 + 0.833333 NA intron (NM_015473, intron 30 of 35) intron (NM_015473, intron 30 of 35) -99986 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 191.5-40 chr5 96454086 96454340 + 0.833333 NA intron (NR_130776, intron 4 of 4) MIRb|SINE|MIR -20965 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 130.167-44 chr22 19199655 19200133 + 0.833333 NA intron (NM_007098, intron 23 of 32) intron (NM_007098, intron 23 of 32) -21031 NR_046298 6576 Hs.111024 NM_005984 ENSG00000100075 SLC25A1 CMS23|CTP|D2L2AD|SEA|SLC20A3 solute carrier family 25 member 1 protein-coding 130.167-72 chr7 115147525 115147868 + 0.833333 NA intron (NR_126407, intron 2 of 4) MamTip2|DNA|hAT-Tip100 68738 NR_120521 102724386 Hs.352357 NR_120521 ENSG00000225535 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 192.167-24 chr2 118480675 118481184 + 0.833333 NA Intergenic Intergenic 122037 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 138-89 chr5 127130033 127130337 + 0.833333 NA Intergenic Intergenic -56693 NM_001164478 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 177.5-48 chr21 28428709 28429063 + 0.833333 NA Intergenic Intergenic -110432 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 137-16 chr11 4665662 4665930 + 0.833333 NA Intergenic Intergenic 21814 NM_152430 143503 Hs.470038 NM_152430 ENSG00000180785 OR51E1 D-GPCR|DGPCR|GPR136|GPR164|OR51E1P|OR52A3P|POGR|PSGR2 olfactory receptor family 51 subfamily E member 1 protein-coding 125.667-34 chr14 68234749 68235042 + 0.833333 NA intron (NM_133509, intron 7 of 10) Tigger3|DNA|TcMar-Tigger 393892 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 142.667-46 chr2 46884014 46884253 + 0.833333 NA Intergenic Intergenic 31673 NM_001171509 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 178.334-4 chr3 6323222 6323817 + 0.833333 NA Intergenic Intergenic 481930 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 168.5-64 chr8 49808753 49808965 + 0.833333 NA Intergenic L1MB3|LINE|L1 -100937 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 176.333-66 chr9 110769146 110769409 + 0.833333 NA intron (NM_001369398, intron 4 of 8) intron (NM_001369398, intron 4 of 8) 41015 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 125.167-5 chr1 207845083 207845327 + 0.833333 NA Intergenic Intergenic -22502 NR_135298 100128537 Hs.445414 NR_135298 MIR29B2CHG C1orf132 MIR29B2 and MIR29C host gene ncRNA 267.833-8 chr2 17947073 17947487 + 0.833333 NA Intergenic L2b|LINE|L2 68613 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 258.5-3 chr1 219885938 219886564 + 0.833333 NA Intergenic L1MB1|LINE|L1 42400 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 155.667-47 chr20 58544568 58545037 + 0.833333 NA intron (NR_034147, intron 5 of 6) intron (NR_034147, intron 5 of 6) -29403 NM_153360 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 150.667-66 chr3 146628918 146629171 + 0.833333 NA Intergenic Intergenic -22828 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 194.667-37 chr20 49801936 49802415 + 0.833333 NA Intergenic MLT1E2|LTR|ERVL-MaLR -10538 NM_001260491 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 129.167-55 chr4 148155072 148155355 + 0.833333 NA intron (NM_000901, intron 4 of 8) intron (NM_000901, intron 4 of 8) 287201 NM_001166104 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 151-66 chr6 67333034 67333379 + 0.833333 NA Intergenic Intergenic -722145 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 147.5-33 chr15 61769370 61769687 + 0.833333 NA Intergenic Intergenic 39610 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 201.5-14 chr2 9092421 9092841 + 0.833333 NA Intergenic L1MC|LINE|L1 -88947 NR_135600 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 126.833-53 chr5 94848848 94849115 + 0.833333 NA intron (NM_001002796, intron 17 of 22) intron (NM_001002796, intron 17 of 22) 230312 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 152.5-34 chr3 6652066 6652624 + 0.833333 NA intron (NR_110123, intron 2 of 3) intron (NR_110123, intron 2 of 3) 153104 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 194.5-24 chr3 50580502 50580837 + 0.833333 NA 3' UTR (NM_016173, exon 11 of 11) 3' UTR (NM_016173, exon 11 of 11) -9642 NM_001171741 51161 Hs.517860 NM_016210 ENSG00000088543 C3orf18 G20 chromosome 3 open reading frame 18 protein-coding 114.833-48 chr4 28966456 28966655 + 0.833333 NA Intergenic Intergenic -30229 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 162.833-55 chrX 47025607 47025925 + 0.833333 NA intron (NM_001077445, intron 5 of 10) intron (NM_001077445, intron 5 of 10) -52589 NM_001282849 9104 Hs.77854 NM_004683 ENSG00000130988 RGN GNL|HEL-S-41|RC|SMP30 regucalcin protein-coding 191.833-23 chr4 48051860 48052158 + 0.833333 NA Intergenic L1HS|LINE|L1 35237 NM_207330 152519 Hs.134190 NM_207330 ENSG00000163293 NIPAL1 NPAL1 NIPA like domain containing 1 protein-coding 261.333-17 chr5 118541386 118541788 + 0.833333 NA intron (NR_104610, intron 1 of 9) (TA)n|Simple_repeat|Simple_repeat 20530 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 134-102 chr8 60739555 60739849 + 0.833333 NA intron (NM_017780, intron 1 of 37) intron (NM_017780, intron 1 of 37) -1557 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 133.833-10 chr10 57207787 57208064 + 0.833333 NA Intergenic L1ME3G|LINE|L1 96634 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 230.667-34 chr8 139848708 139849088 + 0.833333 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -145775 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 237-21 chr8 80818330 80818722 + 0.833333 NA intron (NM_001033723, intron 2 of 8) MER2|DNA|TcMar-Tigger 55942 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 120.667-25 chr12 16016253 16016420 + 0.833333 NA intron (NM_015954, intron 6 of 8) intron (NM_015954, intron 6 of 8) 105004 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 228.833-15 chr5 3860441 3860751 + 0.833333 NA Intergenic MIR|SINE|MIR 264764 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 211.333-35 chr4 56126744 56127127 + 0.833333 NA Intergenic Intergenic -43260 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 145.167-2 chr1 68797130 68797367 + 0.833333 NA Intergenic LTR06|LTR|ERV1 -258650 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 184-18 chr14 76827010 76827305 + 0.833333 NA intron (NM_194287, intron 1 of 13) MIRc|SINE|MIR 749 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 205.333-20 chr18 80248720 80249329 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -1510 NM_032510 84552 Hs.654920 NM_032510 ENSG00000178184 PARD6G PAR-6G|PAR6gamma par-6 family cell polarity regulator gamma protein-coding 114.333-82 chr22 27522201 27522618 + 0.833333 NA Intergenic Intergenic 211758 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 167.5-61 chr8 51783123 51783395 + 0.833333 NA intron (NM_144651, intron 1 of 22) MamGypsy2-I|LTR|Gypsy 26186 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 258.5-13 chr2 109564390 109565133 + 0.833333 NA intron (NM_001321513, intron 7 of 9) intron (NM_001321513, intron 7 of 9) 48906 NM_001321513 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 249.833-14 chr8 88317703 88318273 + 0.833333 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 9495 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 266.167-9 chr14 65560309 65560673 + 0.833333 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 89389 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 267.667-14 chr3 21512536 21512990 + 0.833333 NA intron (NM_024697, intron 3 of 7) intron (NM_024697, intron 3 of 7) -30026 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 228.833-20 chr8 85589783 85590168 + 0.833333 NA Intergenic MER50|LTR|ERV1 65701 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 157.667-44 chr22 26912448 26912812 + 0.833333 NA intron (NR_110540, intron 2 of 2) intron (NR_110540, intron 2 of 2) 9338 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 171.667-28 chr15 34945333 34945630 + 0.833333 NA intron (NM_014691, intron 5 of 34) L2|LINE|L2 24261 NM_014691 9716 Hs.510958 NM_014691 ENSG00000021776 AQR IBP160|fSAP164 aquarius intron-binding spliceosomal factor protein-coding 138.333-98 chr7 42488972 42489153 + 0.833333 NA Intergenic Intergenic 217385 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 121.833-36 chr2 234389017 234389190 + 0.833333 NA Intergenic L1PA8|LINE|L1 65492 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 164.5-60 chr8 118214627 118214829 + 0.833333 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -102909 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 135-19 chr11 113721978 113722267 + 0.833333 NA Intergenic L2c|LINE|L2 -15749 NR_110046 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 196.667-11 chr12 26170621 26171001 + 0.833333 NA Intergenic Intergenic -24525 NM_001135823 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 141.5-50 chr2 160459392 160459836 + 0.833333 NA intron (NM_002897, intron 1 of 13) intron (NM_002897, intron 1 of 13) 34193 NM_002897 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 143.333-26 chr17 58707779 58708044 + 0.833333 NA intron (NM_058216, intron 4 of 8) MLT1A|LTR|ERVL-MaLR 15309 NM_058216 5889 Hs.412587 NM_002876 ENSG00000108384 RAD51C BROVCA3|FANCO|R51H3|RAD51L2 RAD51 paralog C protein-coding 141.167-7 chr10 27552916 27553142 + 0.833333 NA Intergenic L1ME1|LINE|L1 48725 NR_046172 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 186.167-34 chr5 24093500 24093916 + 0.833333 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 142360 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 208 chr1 67576418 67576748 + 0.833333 NA Intergenic AluJo|SINE|Alu -108618 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 162.833 chr1 94952206 94952498 + 0.833333 NA intron (NR_033998, intron 2 of 3) L1ME3B|LINE|L1 24324 NR_033998 729970 Hs.297988 NR_033998 ENSG00000235501 LOC729970 - hCG2028352-like ncRNA 262.667-18 chr2 6472147 6472840 + 0.833333 NA Intergenic Intergenic -97071 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 167.167-32 chr17 66026223 66026512 + 0.833333 NA intron (NM_001353129, intron 16 of 26) intron (NM_001353129, intron 16 of 26) 165525 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 199.167-49 chr9 38352275 38352519 + 0.833333 NA Intergenic Intergenic -40305 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 204.667-14 chr12 26310177 26310600 + 0.833333 NA Intergenic L1PA8|LINE|L1 114815 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 137.333-111 chr9 88427271 88427556 + 0.833333 NA intron (NM_006717, intron 2 of 5) intron (NM_006717, intron 2 of 5) 38969 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 224.333-26 chr6 51714188 51714616 + 0.833333 NA intron (NM_138694, intron 60 of 66) intron (NM_138694, intron 60 of 66) 92532 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 194.333-38 chr7 48383497 48383913 + 0.833333 NA intron (NM_152701, intron 35 of 61) intron (NM_152701, intron 35 of 61) 212247 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 116.5-79 chr6 140684201 140684358 + 0.833333 NA TTS (NR_039675) TTS (NR_039675) 465 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 144.333-93 chr9 6265745 6266092 + 0.833333 NA Intergenic Intergenic 17447 NM_001353802 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 194-42 chr4 151452020 151452287 + 0.833333 NA intron (NM_001348694, intron 1 of 12) intron (NM_001348694, intron 1 of 12) 42977 NM_001348694 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 202.167-8 chr11 106107661 106107970 + 0.833333 NA Intergenic L2a|LINE|L2 24301 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 128.833-87 chr8 134357156 134357369 + 0.833333 NA Intergenic Intergenic -240809 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 133.333-106 chr6 109563764 109563973 + 0.833333 NA intron (NM_001145128, intron 23 of 40) intron (NM_001145128, intron 23 of 40) -80631 NM_014797 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 148.833-42 chr3 172417702 172417932 + 0.833333 NA Intergenic L1MA3|LINE|L1 30639 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 203.833-23 chr8 20738492 20738873 + 0.833333 NA Intergenic Intergenic -123756 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 194.667-48 chr4 62067830 62068243 + 0.833333 NA intron (NM_001371343, intron 23 of 23) intron (NM_001371343, intron 23 of 23) 93729 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 131.667-48 chr18 3686200 3686435 + 0.833333 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 82580 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 240.833-15 chr2 153411195 153411582 + 0.833333 NA Intergenic L2b|LINE|L2 67374 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 168.5-2 chr1 20850750 20850978 + 0.833333 NA intron (NM_003760, intron 23 of 31) intron (NM_003760, intron 23 of 31) -64176 NM_016287 50809 Hs.142442 NM_016287 ENSG00000127483 HP1BP3 HP1-BP74|HP1BP74 heterochromatin protein 1 binding protein 3 protein-coding 286.5 chr1 67919532 67920004 + 0.833333 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) -86301 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 172.333-26 chr17 11137247 11137640 + 0.833333 NA Intergenic Intergenic -103770 NM_207386 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 155.833-71 chrX 88187419 88187813 + 0.833333 NA Intergenic L1MA2|LINE|L1 -559609 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 173.833-30 chr2 223612434 223612819 + 0.833333 NA Intergenic Intergenic -10265 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 227.333-26 chr4 15549128 15549556 + 0.833333 NA intron (NM_001080522, intron 18 of 37) intron (NM_001080522, intron 18 of 37) 79460 NM_001164720 57545 Hs.590928 NM_020785 ENSG00000048342 CC2D2A JBTS9|MKS6 coiled-coil and C2 domain containing 2A protein-coding 175.5-39 chr3 68009456 68009815 + 0.833333 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 5388 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 143.5-35 chr19 30021768 30021953 + 0.833333 NA Intergenic L1PB3|LINE|L1 79621 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 118.5-23 chr12 15629483 15629771 + 0.833333 NA intron (NM_004447, intron 18 of 20) intron (NM_004447, intron 18 of 20) 83016 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 170-4 chr10 36099529 36099753 + 0.833333 NA Intergenic L1MCa|LINE|L1 321339 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 117.167-4 chr1 155022266 155022432 + 0.833333 NA intron (NM_144622, intron 14 of 14) intron (NM_144622, intron 14 of 14) 11432 NM_144622 127579 Hs.591491 NM_144622 ENSG00000163354 DCST2 - DC-STAMP domain containing 2 protein-coding 143.167-80 chr8 120898068 120898404 + 0.833333 NA Intergenic L1PA17|LINE|L1 -86190 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 324-6 chr2 86776023 86776786 + 0.833333 NA 3' UTR (NM_022780, exon 9 of 9) 3' UTR (NM_022780, exon 9 of 9) 15310 NM_001768 925 Hs.85258 NM_001768 ENSG00000153563 CD8A CD8|Leu2|p32 CD8a molecule protein-coding 145.167-23 chr14 41989312 41989594 + 0.833333 NA Intergenic Intergenic 382597 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 193.667-52 chr7 95315974 95316269 + 0.833333 NA intron (NM_000446, intron 3 of 8) intron (NM_000446, intron 3 of 8) 8411 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 143.5-47 chr21 16122411 16122704 + 0.833333 NA intron (NR_111005, intron 1 of 6) L1MEg|LINE|L1 51443 NR_111004 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 140.667-88 chr8 100566648 100566968 + 0.833333 NA Intergenic Intergenic -7049 NM_001270379 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 266-7 chr14 68329018 68329498 + 0.833333 NA intron (NM_133509, intron 8 of 10) AluJr4|SINE|Alu 299529 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 126-12 chr10 65242963 65243131 + 0.833333 NA Intergenic Intergenic -318529 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 174.167-6 chr10 27120026 27120390 + 0.833333 NA intron (NM_139312, intron 14 of 19) intron (NM_139312, intron 14 of 19) -19710 NM_014915 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 136.333-45 chr2 66907719 66908010 + 0.833333 NA intron (NR_110169, intron 1 of 4) L1ME1|LINE|L1 3428 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 271.667-5 chr16 71548773 71549342 + 0.833333 NA Intergenic Intergenic -15959 NR_103852 100132529 Hs.710296 NR_103851 ENSG00000260886 TAT-AS1 - TAT antisense RNA 1 ncRNA 120.167-56 chr3 63961646 63961818 + 0.833333 NA intron (NM_001177387, intron 4 of 12) intron (NM_001177387, intron 4 of 12) -6062 NM_001128149 6314 Hs.476595 NM_000333 ENSG00000163635 ATXN7 ADCAII|OPCA3|SCA7|SGF73 ataxin 7 protein-coding 120-74 chr3 101822414 101822592 + 0.833333 NA non-coding (NR_145993, exon 7 of 7) non-coding (NR_145993, exon 7 of 7) -5487 NM_001005474 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 212.833-16 chr3 143540530 143540917 + 0.833333 NA intron (NM_173653, intron 9 of 15) MIR|SINE|MIR 198477 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 129-17 chr10 122010477 122010750 + 0.833333 NA intron (NM_206862, intron 1 of 22) MamSINE1|SINE|tRNA-RTE 21450 NM_001291877 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 250.833-5 chr15 90028576 90028902 + 0.833333 NA intron (NM_198526, intron 1 of 4) intron (NM_198526, intron 1 of 4) 21984 NR_036135 100422841 NR_036135 ENSG00000265871 MIR3174 - microRNA 3174 ncRNA 285.5-12 chr20 11708106 11708711 + 0.833333 NA Intergenic LTR2B|LTR|ERV1 162307 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 151.5-70 chr8 67626228 67626600 + 0.833333 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 119946 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 246.5-13 chr2 202811798 202812260 + 0.833333 NA intron (NM_001288623, intron 8 of 12) L2b|LINE|L2 17205 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 181.667-54 chr5 173835783 173836211 + 0.833333 NA Intergenic MIRb|SINE|MIR -45055 NR_108028 101928154 Hs.366725 NR_108028 LINC01485 - long intergenic non-protein coding RNA 1485 ncRNA 214.167-13 chr2 51783899 51784328 + 0.833333 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -586535 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 242.833-4 chr2 88394723 88395292 + 0.833333 NA Intergenic Intergenic 57686 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 255.833-14 chr4 166846399 166847068 + 0.833333 NA intron (NM_001040159, intron 6 of 10) intron (NM_001040159, intron 6 of 10) 387693 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 123.833-44 chr4 167009703 167009914 + 0.833333 NA intron (NM_001204354, intron 2 of 9) L1ME2|LINE|L1 224618 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 118.333-4 chr1 98811790 98811955 + 0.833333 NA Intergenic L2a|LINE|L2 150151 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 139.167-21 chr14 66788960 66789131 + 0.833333 NA intron (NM_001024218, intron 3 of 21) PABL_A-int|LTR|ERV1 281638 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 124.833-26 chr16 6823471 6823712 + 0.833333 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 49782 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 145.833-30 chr16 9950319 9950591 + 0.833333 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 231612 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 228.833-14 chr4 35975928 35976328 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 267811 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 176.167-7 chr10 110096135 110096504 + 0.833333 NA intron (NM_001121, intron 1 of 13) MLT1H-int|LTR|ERVL-MaLR -87938 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 131-52 chr5 37698027 37698270 + 0.833333 NA intron (NM_001345998, intron 11 of 17) intron (NM_001345998, intron 11 of 17) 136674 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 195-10 chr14 55142092 55142371 + 0.833333 NA intron (NR_003225, intron 2 of 3) intron (NR_003225, intron 2 of 3) 5248 NR_003225 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 162.833-12 chr11 115208027 115208442 + 0.833333 NA intron (NM_001301045, intron 7 of 10) intron (NM_001301045, intron 7 of 10) -125343 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 128.833-57 chr3 131712315 131712654 + 0.833333 NA intron (NM_130808, intron 3 of 15) intron (NM_130808, intron 3 of 15) -209513 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 201.167-13 chr2 56986273 56986583 + 0.833333 NA Intergenic MIR|SINE|MIR -800658 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 194.5-4 chr13 65912808 65913094 + 0.833333 NA Intergenic Intergenic 46904 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 157-55 chr3 50869946 50870166 + 0.833333 NA intron (NM_004947, intron 3 of 52) L1MA2|LINE|L1 194976 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 251.5-17 chr5 111701024 111701747 + 0.833333 NA intron (NR_040093, intron 2 of 6) intron (NR_040093, intron 2 of 6) 54866 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 167.833-58 chr9 28730014 28730348 + 0.833333 NA intron (NM_001354574, intron 2 of 5) HAL1|LINE|L1 -10876 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 289.834-2 chr1 107949073 107949868 + 0.833333 NA intron (NM_006113, intron 1 of 26) AluJb|SINE|Alu -14973 NR_046653 100873946 Hs.568676 NR_046653 ENSG00000230489 VAV3-AS1 - VAV3 antisense RNA 1 ncRNA 148.833-67 chrX 51937834 51938155 + 0.833333 NA Intergenic L1MA4|LINE|L1 44371 NM_001005333 9500 Hs.5258 NM_006986 ENSG00000179222 MAGED1 DLXIN-1|NRAGE MAGE family member D1 protein-coding 150.333-96 chr7 96069459 96069690 + 0.833333 NA intron (NM_004411, intron 14 of 16) intron (NM_004411, intron 14 of 16) 150182 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 306.833 chr10 128652618 128652999 + 0.833333 NA Intergenic Intergenic -260025 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 160.667-8 chr1 174569637 174569890 + 0.833333 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 121799 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 196.5-39 chr8 88931788 88932189 + 0.833333 NA Intergenic L1PREC2|LINE|L1 -604505 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 126-103 chr9 135887407 135887616 + 0.833333 NA intron (NM_015447, intron 1 of 16) intron (NM_015447, intron 1 of 16) 20035 NM_015447 157922 Hs.522493 NM_015447 ENSG00000130559 CAMSAP1 - calmodulin regulated spectrin associated protein 1 protein-coding 266-22 chr8 79836702 79837277 + 0.833333 NA intron (NR_110954, intron 2 of 5) L1MD|LINE|L1 34748 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 176.167-33 chr5 17471682 17472101 + 0.833333 NA intron (NR_134270, intron 1 of 2) L1MA3|LINE|L1 27881 NR_134271 102723526 NR_134270 ENSG00000249662 LINC02218 - long intergenic non-protein coding RNA 2218 ncRNA 141.167-35 chr2 21732752 21732954 + 0.833333 NA Intergenic L1PA14|LINE|L1 -22201 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 168.5-48 chr5 30621287 30621765 + 0.833333 NA Intergenic L1ME2|LINE|L1 -572160 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 274.833-6 chr17 70243117 70243520 + 0.833333 NA Intergenic Intergenic 73783 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 175-63 chr8 140577507 140577774 + 0.833333 NA intron (NM_001164623, intron 2 of 17) intron (NM_001164623, intron 2 of 17) 57993 NM_001164623 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 159.833-39 chr5 67904078 67904373 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR 111012 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 209.5-40 chr8 72071661 72072101 + 0.833333 NA intron (NM_007332, intron 1 of 26) intron (NM_007332, intron 1 of 26) 3703 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 121.333-109 chr8 112829175 112829419 + 0.833333 NA intron (NM_001363185, intron 10 of 66) MER5A|DNA|hAT-Charlie 185804 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 113.333-8 chr1 160995935 160996102 + 0.833333 NA 3' UTR (NM_016946, exon 10 of 10) 3' UTR (NM_016946, exon 10 of 10) 25134 NM_016946 50848 Hs.517293 NM_016946 ENSG00000158769 F11R CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 F11 receptor protein-coding 186.833-15 chr16 9928881 9929285 + 0.833333 NA intron (NM_001134408, intron 3 of 13) intron (NM_001134408, intron 3 of 13) 252984 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 199.667-34 chr2 203670514 203670948 + 0.833333 NA Intergenic AluSz|SINE|Alu -35744 NM_001243078 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 159.833 chr1 25593519 25593831 + 0.833333 NA Intergenic MER113|DNA|hAT-Charlie -23793 NM_001289010 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 277-3 chr14 50806264 50806745 + 0.833333 NA intron (NM_016350, intron 4 of 28) intron (NM_016350, intron 4 of 28) -15293 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 115.167-67 chr3 39066181 39066331 + 0.833333 NA intron (NM_001303403, intron 3 of 18) intron (NM_001303403, intron 3 of 18) 13964 NM_001346228 57599 Hs.109778 NM_020839 ENSG00000114742 WDR48 P80|SPG60|UAF1 WD repeat domain 48 protein-coding 141.5-3 chr1 164391749 164391950 + 0.833333 NA Intergenic L1MB7|LINE|L1 -167511 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 180.5-22 chr18 1610288 1610658 + 0.833333 NA Intergenic MER57A1|LTR|ERV1 -250844 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 226.5-30 chr7 8135207 8135487 + 0.833333 NA intron (NM_001350836, intron 13 of 14) intron (NM_001350836, intron 13 of 14) 126705 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 204-4 chr12 39711081 39711356 + 0.833333 NA intron (NM_001031748, intron 11 of 12) L1PB1|LINE|L1 85035 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 170.667-74 chr7 131028304 131028720 + 0.833333 NA intron (NR_109850, intron 3 of 5) intron (NR_109850, intron 3 of 5) 78518 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 177.5-54 chr3 111509468 111509878 + 0.833333 NA Intergenic L1MCa|LINE|L1 -32524 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 172.667-6 chr1 181639816 181640100 + 0.833333 NA intron (NM_001205293, intron 6 of 47) L3|LINE|CR1 156441 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 207-27 chr20 31271328 31271657 + 0.833333 NA Intergenic L1M2|LINE|L1 13828 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 180.833-26 chr3 33707659 33707986 + 0.833333 NA intron (NM_001365634, intron 1 of 35) L1MC5|LINE|L1 10432 NM_015097 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 124.333-34 chr14 72627192 72627360 + 0.833333 NA intron (NM_001280542, intron 9 of 10) L1MC4a|LINE|L1 110456 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 180-34 chr3 170771582 170771841 + 0.833333 NA Intergenic Intergenic 98484 NM_001099645 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 260.833-2 chr1 63799104 63799624 + 0.833333 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 25347 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 152.667-9 chr10 25932171 25932627 + 0.833333 NA intron (NR_120650, intron 1 of 3) Charlie1b|DNA|hAT-Charlie 1311 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 191.167-3 chr12 20519085 20519459 + 0.833333 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) -52592 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 117.333-50 chr2 183519685 183520052 + 0.833333 NA Intergenic Intergenic 395425 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 184.5-30 chr3 24870741 24871101 + 0.833333 NA intron (NM_001290216, intron 2 of 10) L1MA3|LINE|L1 41598 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 164.333-86 chr8 132232131 132232376 + 0.833333 NA intron (NM_004519, intron 1 of 14) MER5A1|DNA|hAT-Charlie -126988 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 175.667-18 chr14 67734566 67734862 + 0.833333 NA TTS (NM_152443) TTS (NM_152443) 32828 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 146.5-2 chr1 117617242 117617440 + 0.833333 NA intron (NM_017709, intron 1 of 1) intron (NM_017709, intron 1 of 1) 11293 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 190.333-5 chr1 248673316 248673744 + 0.833333 NA Intergenic Intergenic 8774 NM_001004734 401994 Hs.449973 NM_001004734 ENSG00000189181 OR14I1 OR5BU1|OR5BU1P olfactory receptor family 14 subfamily I member 1 protein-coding 131.167-45 chr20 45239185 45239374 + 0.833333 NA Intergenic MIRb|SINE|MIR 15285 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 217.833-24 chr8 89140152 89140427 + 0.833333 NA Intergenic Intergenic 617422 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 116.5-64 chr4 152217548 152217761 + 0.833333 NA Intergenic L2a|LINE|L2 116836 NR_121627 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 175.833-49 chrX 44566929 44567289 + 0.833333 NA Intergenic Intergenic -24250 NM_173794 139341 Hs.7549 NM_173794 ENSG00000069509 FUNDC1 - FUN14 domain containing 1 protein-coding 118.333-72 chr3 50020123 50020367 + 0.833333 NA intron (NM_001349194, intron 3 of 17) L1MC|LINE|L1 -68674 NR_036627 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA-15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 174.833-31 chr3 71176847 71177124 + 0.833333 NA intron (NR_146142, intron 6 of 19) AluSx1|SINE|Alu -44788 NM_001349342 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 164.167-3 chr1 233982823 233983184 + 0.833333 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) 78327 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 367.333 chr2 56530494 56531659 + 0.833333 NA Intergenic MER90|LTR|ERV1 -345306 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 249-13 chr2 185789146 185789734 + 0.833333 NA exon (NM_173651, exon 16 of 23) exon (NM_173651, exon 16 of 23) 10710 NR_144453 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 138.167-4 chr1 183872932 183873189 + 0.833333 NA intron (NM_001297669, intron 5 of 18) intron (NM_001297669, intron 5 of 18) 67940 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 272.167-15 chr16 47405728 47406219 + 0.833333 NA intron (NM_030790, intron 6 of 17) intron (NM_030790, intron 6 of 17) 55090 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 114.333-19 chr11 6630716 6631103 + 0.833333 NA intron (NM_003737, intron 9 of 20) intron (NM_003737, intron 9 of 20) -11487 NM_000391 1200 Hs.523454 NM_000391 ENSG00000166340 TPP1 CLN2|GIG1|LPIC|SCAR7|TPP-1 tripeptidyl peptidase 1 protein-coding 139.833-75 chr8 121229173 121229511 + 0.833333 NA Intergenic AluSc8|SINE|Alu -410004 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 185-7 chr10 113218744 113219251 + 0.833333 NA Intergenic Intergenic 89726 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 155.333-22 chr12 60046100 60046425 + 0.833333 NA Intergenic L1MA5|LINE|L1 356892 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 153.333-5 chr1 236960596 236960899 + 0.833333 NA Intergenic AluJo|SINE|Alu 43694 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 164.667-16 chr11 121809097 121809366 + 0.833333 NA Intergenic Intergenic 290613 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 157.833-31 chr17 78720547 78720856 + 0.833333 NA intron (NM_004762, intron 1 of 12) AluJb|SINE|Alu 3029 NM_001365041 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 115.833-31 chr2 12449719 12450109 + 0.833333 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 250784 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 113.667-64 chr2 76860616 76860880 + 0.666667 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -125217 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 139.833-80 chr8 142240470 142240875 + 0.666667 NA intron (NM_001366901, intron 12 of 13) L1MEd|LINE|L1 42316 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 190-41 chr3 132652967 132653352 + 0.666667 NA intron (NM_032169, intron 1 of 19) L2a|LINE|L2 -1287 NM_198329 79876 Hs.170737 NM_024818 ENSG00000081307 UBA5 EIEE44|SCAR24|THIFP1|UBE1DC1 ubiquitin like modifier activating enzyme 5 protein-coding 163.167-19 chr17 18063613 18064244 + 0.666667 NA intron (NM_024052, intron 5 of 5) AluSq10|SINE|Alu -24020 NM_001330144 1819 Hs.78582 NM_001388 ENSG00000108591 DRG2 - developmentally regulated GTP binding protein 2 protein-coding 121.667-3 chr1 109108036 109108429 + 0.666667 NA intron (NM_001366200, intron 1 of 4) AluSz|SINE|Alu 4515 NR_158763 127003 Hs.446962 NM_001122961 ENSG00000179902 C1orf194 - chromosome 1 open reading frame 194 protein-coding 192.833-29 chr5 42890770 42891099 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -78858 NM_001093726 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 215.333-36 chr5 14091989 14092392 + 0.666667 NA Intergenic Intergenic -51152 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 186.5-46 chr3 95167329 95167730 + 0.666667 NA Intergenic L1ME1|LINE|L1 229266 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 257.333-5 chr14 27580127 27580708 + 0.666667 NA intron (NR_148991, intron 2 of 2) L1PA16|LINE|L1 -32171 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 275.167-5 chr16 3602205 3602880 + 0.666667 NA intron (NM_032444, intron 3 of 14) MER5A1|DNA|hAT-Charlie 9064 NM_032444 84464 Hs.143681 NM_032444 ENSG00000188827 SLX4 BTBD12|FANCP|MUS312 SLX4 structure-specific endonuclease subunit protein-coding 230.5-18 chr7 53542377 53542949 + 0.666667 NA Intergenic Intergenic 269268 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 163-63 chr8 114863012 114863404 + 0.666667 NA Intergenic L1MC1|LINE|L1 804805 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 168.667-69 chr6 115831914 115832256 + 0.666667 NA Intergenic Intergenic -188250 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 188.833-38 chr8 29733884 29734314 + 0.666667 NA intron (NR_026765, intron 1 of 3) intron (NR_026765, intron 1 of 3) 14010 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 241.833-10 chr3 94344530 94345101 + 0.666667 NA Intergenic L1PA10|LINE|L1 281754 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 137-71 chr4 30702554 30702983 + 0.666667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -17601 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 190.333-52 chr7 31645011 31645399 + 0.666667 NA intron (NM_194300, intron 10 of 12) intron (NM_194300, intron 10 of 12) -41812 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 151-49 chr3 149606749 149607079 + 0.666667 NA intron (NM_001348362, intron 5 of 9) L2b|LINE|L2 51111 NM_001168280 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 175.833-13 chr16 62588745 62589134 + 0.666667 NA Intergenic Intergenic -552501 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 192-16 chr15 40804655 40805227 + 0.666667 NA intron (NM_018163, intron 1 of 10) AluSz|SINE|Alu -2148 NM_001258420 84936 Hs.121676 NM_032850 ENSG00000166140 ZFYVE19 ANCHR|MPFYVE zinc finger FYVE-type containing 19 protein-coding 159.333-48 chr3 156039703 156040003 + 0.666667 NA Intergenic Intergenic -80695 NM_172160 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 148.333-85 chr5 169462261 169462643 + 0.666667 NA Intergenic Intergenic -121321 NM_001329639 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 145.333-99 chr9 24522352 24522726 + 0.666667 NA Intergenic Intergenic 23137 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 138.667-78 chr5 111546138 111546469 + 0.666667 NA intron (NR_040093, intron 1 of 6) L1ME1|LINE|L1 -33706 NM_001308057 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 171-30 chr20 49130982 49131615 + 0.666667 NA intron (NM_001319134, intron 5 of 12) L1MC4|LINE|L1 57072 NM_017454 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 312.833-6 chr4 128329687 128330245 + 0.666667 NA Intergenic MIRb|SINE|MIR -42153 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 189.333-35 chr3 111778744 111779212 + 0.666667 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) 46482 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 266-6 chr12 77760491 77761178 + 0.666667 NA Intergenic Intergenic -70060 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 225.5-30 chr2 102428210 102428744 + 0.666667 NA intron (NM_003853, intron 5 of 11) L1MA4|LINE|L1 -3812 NR_039930 100616157 NR_039930 ENSG00000264764 MIR4772 mir-4772 microRNA 4772 ncRNA 136.167-13 chr11 24121861 24122108 + 0.666667 NA Intergenic Intergenic -375069 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 180.333-40 chr22 39754189 39754757 + 0.666667 NA intron (NM_152512, intron 6 of 6) intron (NM_152512, intron 6 of 6) 139287 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 152.5-6 chr11 23593753 23594032 + 0.666667 NA Intergenic Intergenic -174702 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 168.333-57 chr8 100066096 100066444 + 0.666667 NA exon (NM_001286693, exon 5 of 26) exon (NM_001286693, exon 5 of 26) 39356 NM_001286693 26166 Hs.120021 NM_015668 ENSG00000132554 RGS22 CT145|PRTD-NY2 regulator of G protein signaling 22 protein-coding 151.333-53 chr20 19384260 19384682 + 0.666667 NA intron (NM_020689, intron 2 of 16) L1MA9|LINE|L1 -99875 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 125.667-77 chr3 71693983 71694310 + 0.666667 NA intron (NM_173359, intron 5 of 7) intron (NM_173359, intron 5 of 7) 31256 NM_001134651 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 137.667-94 chr8 112991054 112991452 + 0.666667 NA intron (NM_198123, intron 6 of 70) intron (NM_198123, intron 6 of 70) 347760 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 188.667-11 chr11 73428240 73428617 + 0.666667 NA intron (NM_001286050, intron 3 of 8) L2c|LINE|L2 51760 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 117.833-70 chr6 71922302 71922615 + 0.666667 NA intron (NM_001350412, intron 1 of 2) AluJb|SINE|Alu 35755 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 195.5-8 chr10 122874112 122874696 + 0.666667 NA intron (NM_152644, intron 1 of 3) L1MC2|LINE|L1 5177 NM_152644 196792 Hs.114648 NM_152644 ENSG00000213185 FAM24B - family with sequence similarity 24 member B protein-coding 193.667-58 chr9 36251731 36252289 + 0.666667 NA intron (NM_001128227, intron 1 of 11) AluSx3|SINE|Alu 6438 NM_001190384 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 150.667-11 chr10 6847522 6847958 + 0.666667 NA Intergenic L3|LINE|CR1 68142 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 120.333-116 chr8 87066902 87067090 + 0.666667 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 200581 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 170-83 chr9 75004453 75004980 + 0.666667 NA intron (NM_001320497, intron 3 of 7) intron (NM_001320497, intron 3 of 7) 22435 NM_001320497 138199 Hs.567688 NM_152420 ENSG00000156017 CARNMT1 C9orf41|UPF0586 carnosine N-methyltransferase 1 protein-coding 177.667-21 chr13 59706920 59707311 + 0.666667 NA intron (NM_001258366, intron 26 of 26) intron (NM_001258366, intron 26 of 26) -305603 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 166.5-64 chr9 38321950 38322399 + 0.666667 NA Intergenic L1MEd|LINE|L1 -70528 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 201.167-29 chr6 10636741 10637162 + 0.666667 NA Intergenic L1M5|LINE|L1 51191 NM_145655 2651 Hs.519884 NM_001491 ENSG00000111846 GCNT2 CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1 glucosaminyl (N-acetyl) transferase 2 (I blood group) protein-coding 123.167-51 chr2 123985859 123986086 + 0.666667 NA Intergenic L1ME1|LINE|L1 39202 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 189.167-23 chr18 60532063 60532397 + 0.666667 NA Intergenic LTR41B|LTR|ERVL -159455 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 171.333-60 chr5 158974912 158975232 + 0.666667 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 122884 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 119.167-81 chr5 174978324 174978568 + 0.666667 NA intron (NR_046113, intron 1 of 2) L1M3|LINE|L1 17285 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 191.833-13 chr2 42492004 42492407 + 0.666667 NA intron (NM_172344, intron 1 of 1) intron (NM_172344, intron 1 of 1) 1777 NM_172344 170850 Hs.352633 NM_133329 ENSG00000171126 KCNG3 KV10.1|KV6.3 potassium voltage-gated channel modifier subfamily G member 3 protein-coding 144-76 chr8 132866016 132866352 + 0.666667 NA promoter-TSS (NM_003235) promoter-TSS (NM_003235) -774 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 132-78 chr5 159637806 159638023 + 0.666667 NA Intergenic L1M4b|LINE|L1 -171638 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 115.333-49 chr2 35332011 35332199 + 0.666667 NA Intergenic MER101-int|LTR|ERV1 -139300 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 133.667-104 chr9 94790876 94791141 + 0.666667 NA intron (NM_001193331, intron 3 of 7) LTR79|LTR|ERVL -18954 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 129.167-85 chr8 127025796 127026043 + 0.666667 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 12765 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 119.167-38 chr2 26110466 26110808 + 0.666667 NA intron (NM_016131, intron 3 of 5) intron (NM_016131, intron 3 of 5) -62451 NM_001168241 150946 Hs.187912 NM_001168241 ENSG00000157833 GAREM2 FAM59B|GAREML GRB2 associated regulator of MAPK1 subtype 2 protein-coding 153.167-60 chr8 102641612 102642068 + 0.666667 NA Intergenic MLT1F|LTR|ERVL-MaLR 12124 NR_103759 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 120.333-70 chr22 29933457 29933696 + 0.666667 NA intron (NM_153051, intron 1 of 18) intron (NM_153051, intron 1 of 18) 50402 NM_021090 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 168.667-24 chr15 93890004 93890309 + 0.666667 NA Intergenic Intergenic 10443 NR_138083 283682 Hs.134687 NR_138083 LINC01579 - long intergenic non-protein coding RNA 1579 ncRNA 133.833-29 chr15 61765425 61765819 + 0.666667 NA Intergenic Intergenic 35704 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 216.667-18 chr15 85541200 85541551 + 0.666667 NA intron (NM_007200, intron 4 of 36) L1ME2z|LINE|L1 -78575 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 143.333-58 chr3 77115395 77115748 + 0.666667 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 17559 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 153-26 chr19 49221359 49221770 + 0.666667 NA Intergenic AluJr|SINE|Alu 63772 NM_001195227 54795 Hs.467101 NM_017636 ENSG00000130529 TRPM4 LTrpC4|PFHB1B|TRPM4B|hTRPM4 transient receptor potential cation channel subfamily M member 4 protein-coding 174.667-60 chr6 156541529 156541904 + 0.666667 NA Intergenic AluSz|SINE|Alu 162966 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 158.833-14 chr11 112232459 112232832 + 0.666667 NA intron (NM_000317, intron 4 of 5) intron (NM_000317, intron 4 of 5) 6217 NM_000317 5805 Hs.503860 NM_000317 ENSG00000150787 PTS PTPS 6-pyruvoyltetrahydropterin synthase protein-coding 251.334-4 chr3 30031346 30032016 + 0.666667 NA Intergenic Intergenic -97525 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 167.667-50 chr2 198536295 198536757 + 0.666667 NA Intergenic L1PA15|LINE|L1 -161429 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 157.167-6 chr1 173633800 173634357 + 0.666667 NA intron (NM_198493, intron 3 of 5) L1M1|LINE|L1 -1260 NM_001195190 730159 Hs.647757 NM_001195190 ENSG00000232113 TEX50 - testis expressed 50 protein-coding 117.667-132 chrX 25445320 25445569 + 0.666667 NA Intergenic Intergenic -429479 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 122-84 chr7 56315739 56316239 + 0.666667 NA Intergenic MLT1H|LTR|ERVL-MaLR 132386 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 239.667-3 chr11 97885825 97886600 + 0.666667 NA Intergenic Intergenic -1134737 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 134-104 chr8 107753776 107754296 + 0.666667 NA Intergenic Intergenic -256118 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 157.667-56 chr5 24800493 24800858 + 0.666667 NA Intergenic L1ME2z|LINE|L1 39908 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 113.5-38 chr15 58912916 58913371 + 0.666667 NA intron (NR_135042, intron 3 of 18) intron (NR_135042, intron 3 of 18) 20536 NR_135043 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 149-57 chr3 163766044 163766374 + 0.666667 NA Intergenic Intergenic 405347 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 161.667-58 chr3 149074047 149074530 + 0.666667 NA exon (NM_003071, exon 4 of 25) exon (NM_003071, exon 4 of 25) -12044 NR_046648 100873945 Hs.742423 NR_046648 ENSG00000239718 HLTF-AS1 - HLTF antisense RNA 1 ncRNA 163.333 chr1 42670151 42670551 + 0.666667 NA intron (NM_006347, intron 9 of 9) intron (NM_006347, intron 9 of 9) 11928 NM_001330510 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 131.333-12 chr10 112605153 112605498 + 0.666667 NA intron (NM_001365712, intron 6 of 8) intron (NM_001365712, intron 6 of 8) -28845 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 136.167-21 chr14 49305669 49305933 + 0.666667 NA Intergenic Intergenic 280579 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 130.833-41 chr22 28601039 28601409 + 0.666667 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 78641 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 165.833-6 chr1 190185076 190185571 + 0.666667 NA intron (NM_199051, intron 6 of 7) L1M3|LINE|L1 290687 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 148-65 chr5 39872171 39872808 + 0.666667 NA Intergenic L1PA16|LINE|L1 -179802 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 138.833-63 chr4 139862101 139862497 + 0.666667 NA intron (NM_018717, intron 2 of 4) MER5B|DNA|hAT-Charlie 196480 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 142-79 chr6 5238525 5238756 + 0.666667 NA non-coding (NR_126015, exon 4 of 4) non-coding (NR_126015, exon 4 of 4) 22310 NM_001318783 57128 Hs.387755 NM_020408 ENSG00000214113 LYRM4 C6orf149|CGI-203|COXPD19|ISD11 LYR motif containing 4 protein-coding 119-102 chr9 29701437 29701793 + 0.666667 NA Intergenic Intergenic -488014 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 199-7 chr13 27580161 27580721 + 0.666667 NA intron (NM_153371, intron 2 of 9) intron (NM_153371, intron 2 of 9) 40088 NM_153371 222484 Hs.132359 NM_153371 ENSG00000139517 LNX2 PDZRN1 ligand of numb-protein X 2 protein-coding 155-70 chr7 16375564 16375967 + 0.666667 NA intron (NM_001101417, intron 2 of 8) MER68B|LTR|ERVL 45773 NM_001101417 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 149-48 chr20 17399475 17399897 + 0.666667 NA intron (NM_002594, intron 5 of 11) MER113|DNA|hAT-Charlie 131693 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 124.667-72 chr22 39427708 39428185 + 0.666667 NA intron (NM_153497, intron 9 of 10) intron (NM_153497, intron 9 of 10) -4214 NR_040535 100506472 Hs.729080 NR_040535 LOC100506472 - uncharacterized LOC100506472 ncRNA 218.5-34 chr9 36088542 36088897 + 0.666667 NA intron (NM_021111, intron 9 of 20) intron (NM_021111, intron 9 of 20) -47817 NR_104637 152007 Hs.493819 NM_022343 ENSG00000122694 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis related 2 protein-coding 155.333-93 chr8 111394860 111395250 + 0.666667 NA intron (NR_146282, intron 2 of 3) intron (NR_146282, intron 2 of 3) 18416 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 198-38 chr3 66878106 66878581 + 0.666667 NA Intergenic Intergenic -119964 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 144.333-94 chr9 27147502 27148022 + 0.666667 NA intron (NM_001290078, intron 1 of 20) L1ME1|LINE|L1 38621 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 140-60 chr4 56622835 56623304 + 0.666667 NA Intergenic MamGypLTR1d|LTR|Gypsy 33453 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 198-27 chr2 56814467 56814916 + 0.666667 NA Intergenic Intergenic -628921 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 132.333-85 chr5 65226018 65226230 + 0.666667 NA exon (NM_197941, exon 16 of 25) exon (NM_197941, exon 16 of 25) 255796 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 145.5-2 chr1 114446214 114446474 + 0.666667 NA intron (NM_015906, intron 4 of 19) L1MEf|LINE|L1 64859 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 189-31 chr3 159187392 159187851 + 0.666667 NA intron (NM_001197113, intron 1 of 10) intron (NM_001197113, intron 1 of 10) -85626 NM_001197108 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 114.667-118 chr7 50909094 50909418 + 0.666667 NA Intergenic L1MA5|LINE|L1 -115803 NM_001371008 135.667-90 chr5 127661933 127662312 + 0.666667 NA Intergenic Intergenic 9107 NM_001127385 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 115.5-42 chr15 85411622 85411893 + 0.666667 NA intron (NM_007200, intron 1 of 36) Charlie1a|DNA|hAT-Charlie 31154 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 117.667-135 chrX 96281421 96281684 + 0.666667 NA Intergenic Intergenic 56350 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 187.833-3 chr1 79156672 79157116 + 0.666667 NA Intergenic MLT1O|LTR|ERVL-MaLR -150164 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 219.333-8 chr12 4880528 4881168 + 0.666667 NA Intergenic Intergenic -29057 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 240.833-10 chr17 53106268 53107056 + 0.666667 NA Intergenic Intergenic 121157 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 210.667-19 chr17 29250452 29251044 + 0.666667 NA intron (NM_005208, intron 3 of 5) intron (NM_005208, intron 3 of 5) 3891 NM_005208 1411 Hs.46275 NM_005208 ENSG00000108255 CRYBA1 CRYB1|CTRCT10 crystallin beta A1 protein-coding 168-71 chr7 27718089 27718596 + 0.666667 NA Intergenic Intergenic -21031 NM_001206901 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 118.667-125 chr9 135221407 135221754 + 0.666667 NA Intergenic Intergenic 39971 NR_046107 401557 Hs.640138 NR_046107 LOC401557 - uncharacterized LOC401557 ncRNA 225.333-31 chr8 101073889 101074293 + 0.666667 NA intron (NR_033962, intron 2 of 2) intron (NR_033962, intron 2 of 2) 22037 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 234.5-16 chr2 211638954 211639569 + 0.666667 NA intron (NM_001042599, intron 16 of 26) intron (NM_001042599, intron 16 of 26) 787099 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 139.833-51 chr21 29822710 29823039 + 0.666667 NA intron (NM_000830, intron 1 of 16) MLT1J|LTR|ERVL-MaLR 74699 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 124.334-3 chr21 27722934 27723489 + 0.666667 NA intron (NR_024357, intron 1 of 3) MER50-int|LTR|ERV1 832 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 165.167-63 chr9 29884676 29885086 + 0.666667 NA Intergenic L1MB7|LINE|L1 523573 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 121.333-59 chr21 18830225 18830468 + 0.666667 NA Intergenic Intergenic -70534 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 160.333-19 chr15 64522951 64523417 + 0.666667 NA intron (NM_015042, intron 1 of 8) intron (NM_015042, intron 1 of 8) 23764 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 143.667-16 chr10 37765231 37765647 + 0.666667 NA intron (NR_148006, intron 7 of 7) intron (NR_148006, intron 7 of 7) 29736 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 230.5-5 chr13 66223397 66223894 + 0.666667 NA Intergenic Intergenic 5395 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 121.667-11 chr10 72471008 72471266 + 0.666667 NA intron (NM_001195519, intron 3 of 6) AluSc5|SINE|Alu 52849 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 123.167-98 chr8 137149934 137150159 + 0.666667 NA Intergenic MER77B|LTR|ERVL 263542 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 146.333-96 chr8 97389342 97389770 + 0.666667 NA intron (NR_125390, intron 2 of 2) Charlie9|DNA|hAT-Charlie 31291 NR_145760 109617016 NR_145760 ENSG00000207215 SNORD3H - small nucleolar RNA, C/D box 3H snoRNA 183.833-42 chr8 24181566 24181915 + 0.666667 NA Intergenic L1MC1|LINE|L1 -112300 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 195.333-40 chr4 141664916 141665280 + 0.666667 NA intron (NR_037840, intron 2 of 7) intron (NR_037840, intron 2 of 7) 28515 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 115.667-61 chr2 224894894 224895067 + 0.666667 NA intron (NM_001290263, intron 4 of 55) L2b|LINE|L2 52069 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 191-15 chr16 10785553 10786017 + 0.666667 NA intron (NM_001318873, intron 2 of 7) LTR14|LTR|ERVK 33009 NR_134903 780776 Hs.371576 NM_001079512 ENSG00000166676 TVP23A FAM18A|YDR084C trans-golgi network vesicle protein 23 homolog A protein-coding 188-37 chr3 41053201 41053524 + 0.666667 NA Intergenic Arthur1B|DNA|hAT-Tip100 -146143 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 193.833-26 chr3 150968511 150968871 + 0.666667 NA intron (NR_046380, intron 1 of 4) intron (NR_046380, intron 1 of 4) -3987 NR_024066 116933 Hs.570680 NR_024066 CLRN1-AS1 CLRN1OS|UCRP CLRN1 antisense RNA 1 ncRNA 172-3 chr10 70218725 70219058 + 0.666667 NA intron (NM_021129, intron 2 of 10) intron (NM_021129, intron 2 of 10) 14538 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 189.667-47 chr7 107981524 107981884 + 0.666667 NA intron (NM_002291, intron 7 of 33) intron (NM_002291, intron 7 of 33) 21457 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 166.167-16 chr15 22886002 22886298 + 0.666667 NA intron (NM_001033028, intron 8 of 15) THE1D|LTR|ERVL-MaLR 31163 NM_001033028 23191 Hs.26704 NM_014608 ENSG00000273749 CYFIP1 P140SRA-1|SHYC|SRA-1|SRA1 cytoplasmic FMR1 interacting protein 1 protein-coding 275.167-15 chr7 6273457 6274411 + 0.666667 NA Intergenic Intergenic -1310 NM_004227 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 147.5-47 chr2 139079592 139079919 + 0.666667 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat 182431 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 130.667-13 chr11 98883244 98883543 + 0.666667 NA Intergenic L1PA16|LINE|L1 -137556 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 186-17 chr15 56643058 56643556 + 0.666667 NA intron (NM_001002843, intron 18 of 20) intron (NM_001002843, intron 18 of 20) 90779 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 203.5-32 chr5 2807614 2808114 + 0.666667 NA Intergenic L1PA7|LINE|L1 55733 NM_001306150 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 126.833-24 chr12 2117182 2117438 + 0.666667 NA intron (NM_199460, intron 2 of 49).2 intron (NM_199460, intron 2 of 49).2 64025 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 211.333-44 chr6 36503996 36504622 + 0.666667 NA intron (NM_007271, intron 9 of 13) intron (NM_007271, intron 9 of 13) 43170 NM_001305102 11329 Hs.409578 NM_007271 ENSG00000112079 STK38 NDR|NDR1 serine/threonine kinase 38 protein-coding 142.667-21 chr12 23963657 23963984 + 0.666667 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -12788 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 116.167-47 chr3 102232291 102232663 + 0.666667 NA Intergenic Intergenic 68772 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 158.667-35 chr18 13849359 13849668 + 0.666667 NA Intergenic AluSz|SINE|Alu 25364 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 235-6 chr10 93378954 93379398 + 0.666667 NA intron (NM_013451, intron 21 of 53) intron (NM_013451, intron 21 of 53) 103158 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 135.167-74 chr5 26113593 26113851 + 0.666667 NA Intergenic MER45B|DNA|hAT-Tip100 922769 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 183-24 chr2 84280179 84280695 + 0.666667 NA Intergenic MLT2B1|LTR|ERVL -10245 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 140.667-95 chrX 43000515 43000865 + 0.666667 NA Intergenic Intergenic -176304 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 203.833-26 chr8 80745012 80745560 + 0.666667 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 129182 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 225.667-33 chr8 78415493 78416118 + 0.666667 NA Intergenic L2c|LINE|L2 -100535 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 165.333-29 chr2 22569463 22569794 + 0.666667 NA Intergenic Intergenic 33149 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 203.167-37 chr8 110266899 110267372 + 0.666667 NA Intergenic Intergenic -291364 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 138.333-109 chr8 104802844 104803228 + 0.666667 NA Intergenic MIR|SINE|MIR -214012 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 125.833-60 chr3 177846351 177846748 + 0.666667 NA intron (NR_110826, intron 1 of 2) L2a|LINE|L2 29684 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 240-2 chr10 51576278 51576933 + 0.666667 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 122990 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 182-4 chr10 28505110 28505447 + 0.666667 NA Intergenic Intergenic -9465 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 131.667-50 chr2 12255837 12256186 + 0.666667 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) 56881 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 122-69 chr5 119831250 119831504 + 0.666667 NA Intergenic Intergenic 201818 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 160-59 chr5 6062538 6062959 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR 274544 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 134.833-58 chr7 74717118 74717538 + 0.666667 NA TTS (NM_001280800) TTS (NM_001280800) 11590 NR_110044 101926943 Hs.654772 NR_110044 ENSG00000232729 LOC101926943 - uncharacterized LOC101926943 ncRNA 115.5-13 chr10 36644355 36644694 + 0.666667 NA Intergenic Intergenic -481333 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 186.333-45 chr4 58202379 58202789 + 0.666667 NA Intergenic Intergenic 333744 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 144.5-72 chr5 19941875 19942124 + 0.666667 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 46201 NM_004934 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 145.167-70 chr7 77336155 77336533 + 0.666667 NA intron (NM_001350897, intron 18 of 29) intron (NM_001350897, intron 18 of 29) -78854 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 143.167-14 chr12 112600363 112600685 + 0.666667 NA intron (NM_001347952, intron 1 of 21) MIRb|SINE|MIR 25288 NM_001347952 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 210-24 chr3 50962481 50963025 + 0.666667 NA intron (NM_004947, intron 5 of 52) intron (NM_004947, intron 5 of 52) 287673 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 216.833-3 chr11 30501049 30501560 + 0.666667 NA intron (NM_001584, intron 2 of 5) intron (NM_001584, intron 2 of 5) 79189 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 118.167-18 chr14 69805811 69806034 + 0.666667 NA Intergenic L1M7|LINE|L1 -5838 NR_149012 100506358 NR_149012 LOC100506358 - uncharacterized LOC100506358 ncRNA 186.167-11 chr12 14884062 14884415 + 0.666667 NA exon (NM_001190839, exon 3 of 5) exon (NM_001190839, exon 3 of 5) 1616 NM_000900 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 143.333-17 chr13 62911490 62911914 + 0.666667 NA Intergenic Intergenic -104343 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 142.167-17 chr12 87037100 87037583 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -198341 NM_001351285 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 184.333 chr1 27912725 27913093 + 0.666667 NA intron (NM_001355128, intron 1 of 7) MIRb|SINE|MIR 1666 NM_002946 6118 Hs.79411 NM_002946 ENSG00000117748 RPA2 REPA2|RP-A p32|RP-A p34|RPA32 replication protein A2 protein-coding 124.667-41 chr15 79411085 79411332 + 0.666667 NA intron (NM_001330376, intron 2 of 2) intron (NM_001330376, intron 2 of 2) -21308 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 238.834 chr10 69395639 69396416 + 0.666667 NA intron (NM_033496, intron 16 of 17) AluSz6|SINE|Alu 20891 NM_001057 6865 Hs.88372 NM_001057 ENSG00000075073 TACR2 NK2R|NKNAR|SKR|TAC2R tachykinin receptor 2 protein-coding 126.833-55 chr5 170167139 170167372 + 0.666667 NA Intergenic Intergenic 31886 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA 125.5-71 chr6 117314567 117314902 + 0.666667 NA intron (NM_002944, intron 38 of 42) HAL1|LINE|L1 49176 NM_153453 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 156.667-82 chr7 126499204 126499655 + 0.666667 NA intron (NM_001371085, intron 9 of 10) L1MA7|LINE|L1 558755 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 131.667-63 chr2 187846557 187846923 + 0.666667 NA Intergenic Intergenic -292235 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 251.833-2 chr14 61607721 61608421 + 0.666667 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -37418 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 153.667-68 chr6 51629201 51629481 + 0.666667 NA intron (NM_138694, intron 65 of 66) L1PA16|LINE|L1 7471 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 221.333-9 chr13 99008813 99009277 + 0.666667 NA intron (NM_015296, intron 1 of 55) intron (NM_015296, intron 1 of 55) 6740 NM_001366678 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 158.667-88 chr8 61256710 61257088 + 0.666667 NA Intergenic Intergenic -31071 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 201.667-7 chr10 86734063 86734565 + 0.666667 NA 3' UTR (NM_001171610, exon 14 of 14) 3' UTR (NM_001171610, exon 14 of 14) -22325 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 120.667-28 chr12 55822798 55823136 + 0.666667 NA intron (NM_032364, intron 4 of 6) intron (NM_032364, intron 4 of 6) 4926 NM_014182 29095 Hs.534450 NM_014182 ENSG00000123353 ORMDL2 HSPC160|MST095|MSTP095|adoplin-2 ORMDL sphingolipid biosynthesis regulator 2 protein-coding 244.5-12 chr19 39044437 39045233 + 0.666667 NA Intergenic AluJr|SINE|Alu -12286 NM_178820 126433 Hs.187461 NM_178820 ENSG00000161243 FBXO27 FBG5|Fbx27 F-box protein 27 protein-coding 123.667-2 chr1 30474962 30475249 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -243667 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 138.667-41 chr18 51087195 51087561 + 0.666667 NA Intergenic L1MD1|LINE|L1 57165 NM_005359 4089 Hs.75862 NM_005359 ENSG00000141646 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding 141.333-30 chr14 51460089 51460337 + 0.666667 NA intron (NR_051990, intron 2 of 2) intron (NR_051990, intron 2 of 2) -28915 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 160.667-67 chr5 41066297 41066598 + 0.666667 NA intron (NM_173489, intron 3 of 41) intron (NM_173489, intron 3 of 41) 4895 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 200-32 chr2 13622983 13623509 + 0.666667 NA Intergenic L1MD2|LINE|L1 -616233 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 265.833 chr10 64583486 64584241 + 0.666667 NA Intergenic L1PA10|LINE|L1 -241665 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 114.5-42 chr18 63955337 63955657 + 0.666667 NA intron (NM_001123366, intron 3 of 3) L1ME3G|LINE|L1 6196 NM_001123366 284293 Hs.721604 NM_001123366 ENSG00000221887 HMSD ACC-6|ACC6|C18orf53|HSMD-v histocompatibility minor serpin domain containing protein-coding 164.667-36 chr2 59980269 59980840 + 0.666667 NA Intergenic MLT1C|LTR|ERVL-MaLR 402482 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 149.5-61 chr7 94779010 94779421 + 0.666667 NA Intergenic Intergenic 122845 NM_001172438 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 139.167-63 chr7 66372785 66373117 + 0.666667 NA Intergenic HAL1b|LINE|L1 27457 NR_026873 285908 Hs.50755 NM_181722 ENSG00000179406 LINC00174 NCRNA00174 long intergenic non-protein coding RNA 174 ncRNA 152.667-82 chr8 42784066 42784586 + 0.666667 NA Intergenic L1M4b|LINE|L1 -15540 NM_004198 8973 Hs.103128 NM_004198 ENSG00000147434 CHRNA6 CHNRA6 cholinergic receptor nicotinic alpha 6 subunit protein-coding 216.667-48 chr8 120857203 120857826 + 0.666667 NA Intergenic Intergenic -45468 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 143-36 chr2 43762851 43763192 + 0.666667 NA intron (NM_172069, intron 28 of 29) intron (NM_172069, intron 28 of 29) -11018 NM_001348913 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 113.667-2 chr1 86638146 86638352 + 0.666667 NA intron (NR_024604, intron 4 of 14) intron (NR_024604, intron 4 of 14) 3973 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 157.667-5 chr1 178699433 178699833 + 0.666667 NA Intergenic AluSg|SINE|Alu 21884 NR_039622 100616328 NR_039622 ENSG00000266417 MIR4424 - microRNA 4424 ncRNA 218-44 chr7 104313002 104313481 + 0.666667 NA Intergenic MLT1G1|LTR|ERVL-MaLR -15415 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 123.5-49 chr2 128805289 128805517 + 0.666667 NA Intergenic MER68|LTR|ERVL -59197 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 151-73 chr7 124859444 124859801 + 0.666667 NA intron (NM_001042594, intron 7 of 17) intron (NM_001042594, intron 7 of 17) -68812 NM_001024603 154872 Hs.444163 NM_001024603 ENSG00000275356 C7orf77 - chromosome 7 open reading frame 77 protein-coding 147-3 chr1 87021615 87021869 + 0.666667 NA intron (NM_012262, intron 1 of 6) AluJr|SINE|Alu 107107 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 140.667-19 chr12 46153250 46153628 + 0.666667 NA Intergenic Intergenic 113077 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 189.333-45 chr5 117727946 117728433 + 0.666667 NA Intergenic Intergenic -2172 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 189-9 chr2 22508745 22509323 + 0.666667 NA Intergenic Intergenic -27445 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 188.333-7 chr11 24507882 24508390 + 0.666667 NA intron (NM_001252008, intron 1 of 11) MIR1_Amn|SINE|MIR 11083 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 133.167-2 chr1 45168220 45168424 + 0.666667 NA intron (NM_020883, intron 1 of 13) L1PA5|LINE|L1 38283 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 223.334-6 chr3 151909681 151910186 + 0.666667 NA intron (NR_110203, intron 1 of 2) MamGyp-int|LTR|Gypsy 18242 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 164.5-54 chr7 37055479 37055776 + 0.666667 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 57831 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 268.667-8 chr21 30646002 30646580 + 0.666667 NA Intergenic Intergenic 3427 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 235-26 chr5 107291674 107292136 + 0.666667 NA Intergenic Intergenic -280891 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 196.667-23 chr18 69276353 69276773 + 0.666667 NA Intergenic Intergenic -124325 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 162.667-51 chr3 107774824 107775211 + 0.666667 NA intron (NM_001276286, intron 11 of 16) intron (NM_001276286, intron 11 of 16) 103051 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 199.5-6 chr10 130129127 130129524 + 0.666667 NA Intergenic Intergenic -7050 NM_001199868 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 208.667-11 chr12 59864388 59864745 + 0.666667 NA Intergenic Intergenic 175196 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 191.667-9 chr10 114467575 114468014 + 0.666667 NA intron (NM_001352440, intron 11 of 20) intron (NM_001352440, intron 11 of 20) 59119 NM_001322892 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 143.833-5 chr11 48299639 48300084 + 0.666667 NA Intergenic L1M1|LINE|L1 -6362 NM_001004725 256148 Hs.553657 NM_001004725 ENSG00000176555 OR4S1 OR11-100 olfactory receptor family 4 subfamily S member 1 protein-coding 139-52 chr5 89420420 89420726 + 0.666667 NA intron (NR_136221, intron 5 of 6) intron (NR_136221, intron 5 of 6) -516468 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 186.667-80 chr8 118297393 118297727 + 0.666667 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -185741 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 128.667-105 chr7 36592586 36592824 + 0.666667 NA intron (NM_001177507, intron 11 of 19) MIRb|SINE|MIR 7415 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 143.333-42 chr2 213251480 213251868 + 0.666667 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 32535 NR_161186 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 182.833-48 chr6 28228842 28229356 + 0.666667 NA intron (NM_006299, intron 3 of 3) intron (NM_006299, intron 3 of 3) 3824 NM_001199480 7746 Hs.100921 NM_006299 ENSG00000137185 ZSCAN9 PRD51|ZNF193 zinc finger and SCAN domain containing 9 protein-coding 145.167-59 chr5 162923081 162923577 + 0.666667 NA Intergenic L1MB1|LINE|L1 -514242 NM_001364023 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 145.333-86 chr8 62081594 62081983 + 0.666667 NA Intergenic L1PA5|LINE|L1 -167066 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 119.333-54 chr2 108998721 108999069 + 0.666667 NA Intergenic Intergenic -9675 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 153.833-14 chr11 80865370 80865613 + 0.666667 NA Intergenic L1PA15|LINE|L1 -102688 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 120-87 chr5 20168723 20168946 + 0.666667 NA intron (NM_001291956, intron 2 of 14) L1MA1|LINE|L1 -136717 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 140-61 chr4 72219817 72220056 + 0.666667 NA Intergenic Intergenic 180804 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 126.333-101 chr7 50894093 50894323 + 0.666667 NA Intergenic L1ME3A|LINE|L1 -100755 NM_001371008 166.167-31 chr3 118992943 118993447 + 0.666667 NA intron (NM_001353319, intron 1 of 7) AluJr|SINE|Alu 41651 NM_001353325 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 147.333-79 chr7 16694876 16695262 + 0.666667 NA intron (NM_001362717, intron 8 of 11) intron (NM_001362717, intron 8 of 11) 33855 NM_001362717 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 132.5-24 chr13 103217757 103218067 + 0.666667 NA Intergenic Intergenic -151495 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 127.833-41 chr2 134844778 134845046 + 0.666667 NA intron (NM_001307983, intron 2 of 9) MER113A|DNA|hAT-Charlie 6296 NM_138326 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 168.5-47 chr5 22050798 22051125 + 0.666667 NA intron (NM_004061, intron 5 of 14) MER5A|DNA|hAT-Charlie -91391 NR_003921 5369 Hs.247975 NM_031887 ENSG00000168967 PMCHL1 - pro-melanin concentrating hormone like 1 (pseudogene) pseudo 238-16 chr3 32110453 32111031 + 0.666667 NA intron (NM_015141, intron 1 of 7) intron (NM_015141, intron 1 of 7) 4231 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 124-90 chr7 115782264 115782630 + 0.666667 NA Intergenic Intergenic 185866 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 165.333-31 chr2 71716351 71716872 + 0.666667 NA Intergenic Intergenic 249912 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 121.333-46 chr2 45755483 45755881 + 0.666667 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 104007 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 197-6 chr11 14077805 14078155 + 0.666667 NA intron (NM_006108, intron 4 of 15) intron (NM_006108, intron 4 of 15) 115257 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 200.833 chr1 56667455 56667849 + 0.666667 NA intron (NM_006252, intron 1 of 8) MIRb|SINE|MIR -22334 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 144.667-81 chr5 123039084 123039467 + 0.666667 NA Intergenic L1ME3A|LINE|L1 -2550 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 173.833-16 chr12 1470945 1471407 + 0.666667 NA intron (NR_027948, intron 19 of 19) FLAM_A|SINE|Alu -29315 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 117-30 chr14 45144767 45144991 + 0.666667 NA intron (NM_001308134, intron 3 of 10) L1M1|LINE|L1 8940 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 213.667-32 chr5 52778547 52778912 + 0.666667 NA Intergenic L1M4|LINE|L1 -9187 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 143.833-23 chr20 16927644 16927911 + 0.666667 NA Intergenic MIR|SINE|MIR 179424 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 155.667-49 chr3 32406304 32406699 + 0.666667 NA intron (NM_138410, intron 1 of 4) OldhAT1|DNA|hAT-Ac 14648 NM_138410 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 160.333-12 chr11 107189533 107189896 + 0.666667 NA Intergenic L1MA8|LINE|L1 -171238 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 132.333-76 chr4 81829345 81829688 + 0.666667 NA Intergenic Intergenic -357609 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 156.333-24 chr12 61841786 61842178 + 0.666667 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 350857 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 211.833-21 chr4 105809229 105809726 + 0.666667 NA intron (NM_001370181, intron 5 of 11) L2a|LINE|L2 17695 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 143.667-28 chr12 48934523 48934847 + 0.666667 NA Intergenic Intergenic -9138 NM_001143782 51303 Hs.655103 NM_016594 ENSG00000134285 FKBP11 FKBP19 FKBP prolyl isomerase 11 protein-coding 130.833-46 chr4 53174907 53175398 + 0.666667 NA intron (NM_152540, intron 4 of 8) intron (NM_152540, intron 4 of 8) 190909 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 170.833-4 chr1 196551173 196551725 + 0.666667 NA intron (NM_001287820, intron 1 of 26) intron (NM_001287820, intron 1 of 26) 31032 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 124-104 chr9 8610308 8610613 + 0.666667 NA intron (NM_130392, intron 3 of 30) MIR1_Amn|SINE|MIR 123486 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 125-40 chr19 29493215 29493453 + 0.666667 NA intron (NR_040029, intron 1 of 9) HAL1b|LINE|L1 32418 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 136.667-33 chr18 5746724 5747300 + 0.666667 NA Intergenic Intergenic -1807 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 165.5-57 chr7 79446530 79447018 + 0.666667 NA intron (NM_001301128, intron 1 of 20) AluY|SINE|Alu -6183 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 120-49 chr2 31392601 31392919 + 0.666667 NA intron (NM_000379, intron 6 of 35) L1MC1|LINE|L1 21982 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 165-58 chr8 59592017 59592475 + 0.666667 NA Intergenic Intergenic 473036 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 124.667-116 chr7 105138444 105138687 + 0.666667 NA intron (NM_182692, intron 11 of 15) AluJb|SINE|Alu 124360 NM_182931 55904 Hs.592262 NM_018682 ENSG00000005483 KMT2E HDCMC04P|MLL5|NKp44L lysine methyltransferase 2E protein-coding 173.667-69 chr8 119145010 119145482 + 0.666667 NA Intergenic Intergenic -63117 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 177.5-77 chr7 122950381 122950810 + 0.666667 NA Intergenic Plat_L3|LINE|CR1 45105 NM_016945 50833 Hs.272395 NM_016945 ENSG00000128519 TAS2R16 BGLPT|T2R16 taste 2 receptor member 16 protein-coding 147.167-7 chr1 184968944 184969278 + 0.666667 NA intron (NM_052966, intron 1 of 13) MLT1J|LTR|ERVL-MaLR 5397 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 202.833-25 chr6 150699995 150700428 + 0.666667 NA intron (NM_001329800, intron 1 of 15) intron (NM_001329800, intron 1 of 15) 16564 NM_001329798 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 126-45 chr2 183439970 183440184 + 0.666667 NA Intergenic Intergenic 315634 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 163.667-67 chr7 13510181 13510583 + 0.666667 NA Intergenic Intergenic 476132 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 208-20 chr20 33080403 33081215 + 0.666667 NA promoter-TSS (NM_182519) promoter-TSS (NM_182519) -703 NM_182519 149954 Hs.38961 NM_182519 ENSG00000186191 BPIFB4 C20orf186|LPLUNC4|RY2G5|dJ726C3.5 BPI fold containing family B member 4 protein-coding 247.167-23 chr9 12062330 12062780 + 0.666667 NA Intergenic Intergenic -630830 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 157.833-30 chr17 59552047 59552437 + 0.666667 NA Intergenic Intergenic -13368 NM_001166301 79665 Hs.29403 NM_024612 ENSG00000108406 DHX40 ARG147|DDX40|PAD DEAH-box helicase 40 protein-coding 141-39 chr2 43950063 43950469 + 0.666667 NA intron (NM_133259, intron 15 of 37) L1PA11|LINE|L1 45723 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 142-82 chr6 151990178 151990538 + 0.666667 NA intron (NM_001122741, intron 5 of 8) intron (NM_001122741, intron 5 of 8) 177929 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 208.5-16 chr15 82960623 82961132 + 0.666667 NA Intergenic Intergenic -8157 NM_004839 9455 Hs.578443 NM_004839 ENSG00000103942 HOMER2 ACPD|CPD|DFNA68|HOMER-2|VESL-2 homer scaffold protein 2 protein-coding 199.167-34 chr5 40916128 40916534 + 0.666667 NA intron (NM_000587, intron 1 of 17) intron (NM_000587, intron 1 of 17) 6834 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 151.667-75 chr6 86153782 86154211 + 0.666667 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR -475263 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 156.667-42 chr17 49998714 49999052 + 0.666667 NA Intergenic L2b|LINE|L2 -3659 NM_005220 1747 Hs.134194 NM_005220 ENSG00000064195 DLX3 AI4|TDO distal-less homeobox 3 protein-coding 180-61 chrX 99120402 99120725 + 0.666667 NA Intergenic L1M4|LINE|L1 1289710 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 121-49 chr2 127015445 127015757 + 0.666667 NA Intergenic Intergenic 66464 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 162.167-50 chr7 78128472 78128730 + 0.666667 NA intron (NM_001301128, intron 17 of 20) intron (NM_001301128, intron 17 of 20) -218641 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 156.167-50 chr5 126137285 126137699 + 0.666667 NA Intergenic Intergenic -42085 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 200.667-18 chr12 8131833 8132140 + 0.666667 NA intron (NM_194447, intron 2 of 4) L1PA11|LINE|L1 2866 NR_036440 642559 Hs.646545 NR_036440 ENSG00000235602 POU5F1P3 OCT3|OCT4|OCT4-pg3|OTF-3|OTF3|OTF3L|Oct-3|Oct-4|POU5F1|POU5F1L|POU5FLC12 POU class 5 homeobox 1 pseudogene 3 pseudo 160.667-54 chr3 84721856 84722335 + 0.666667 NA intron (NR_033860, intron 11 of 20) intron (NR_033860, intron 11 of 20) 147480 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 177.167-34 chr4 57416840 57417466 + 0.666667 NA Intergenic MIRb|SINE|MIR -8719 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 131.167-69 chr6 122108947 122109178 + 0.666667 NA Intergenic Intergenic -290489 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 144.667-56 chr2 216576508 216576881 + 0.666667 NA Intergenic Intergenic 30244 NR_110392 101928232 Hs.694592 NR_110392 LINC01280 - long intergenic non-protein coding RNA 1280 ncRNA 122.667-32 chr15 101505243 101505525 + 0.666667 NA Intergenic Intergenic -15400 NM_138324 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 167.333-49 chr4 62280108 62280415 + 0.666667 NA Intergenic Intergenic -118496 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 174.333-18 chr14 68059836 68060104 + 0.666667 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 236378 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 162.167-32 chr3 95587327 95587822 + 0.666667 NA Intergenic LTR12C|LTR|ERV1 95619 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 143.167-4 chr1 84691727 84691989 + 0.666667 NA Intergenic Charlie1b|DNA|hAT-Charlie -1390 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 160.333-8 chr10 83539195 83539565 + 0.666667 NA Intergenic Intergenic 137709 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 141-64 chr4 39221211 39221665 + 0.666667 NA intron (NM_025132, intron 14 of 36) intron (NM_025132, intron 14 of 36) 38909 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 132.667-95 chr8 103532351 103532687 + 0.666667 NA intron (NM_001348497, intron 1 of 22) Cheshire|DNA|hAT-Charlie -30609 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 134.5-6 chr1 111375232 111375471 + 0.666667 NA Intergenic L1MA3|LINE|L1 14500 NR_029429 441897 Hs.568387 NR_029429 ENSG00000227179 PGCP1 - progastricsin pseudogene 1 pseudo 133-12 chr10 73426100 73426396 + 0.666667 NA exon (NM_001024593, exon 5 of 7) exon (NM_001024593, exon 5 of 7) 7313 NM_001024593 118490 Hs.631823 NM_001024593 ENSG00000166343 MSS51 ZMYND17 MSS51 mitochondrial translational activator protein-coding 165.834-7 chr8 74383009 74383590 + 0.666667 NA intron (NM_001362931, intron 5 of 5) intron (NM_001362931, intron 5 of 5) 32896 NM_001362931 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 146-43 chr20 21894106 21894488 + 0.666667 NA Intergenic L1MA9|LINE|L1 -159793 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 129-94 chr7 111834153 111834530 + 0.666667 NA intron (NM_001363540, intron 26 of 52) intron (NM_001363540, intron 26 of 52) 25836 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 127.333-32 chr13 101118041 101118355 + 0.666667 NA intron (NM_001350748, intron 18 of 44) L1MC1|LINE|L1 -173834 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 250-2 chr10 33996698 33997182 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR -224260 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 165.833-50 chr5 105220424 105220863 + 0.666667 NA Intergenic Intergenic 121169 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 177.334-2 chr10 111191790 111192431 + 0.666667 NA Intergenic L1ME1|LINE|L1 77819 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 115.333-58 chr2 205184765 205185036 + 0.666667 NA intron (NM_205863, intron 13 of 21) MIR|SINE|MIR -497600 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 161-40 chr3 76041321 76041884 + 0.666667 NA Intergenic Intergenic -256053 NM_001290210 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 156.5-43 chr18 65622864 65623419 + 0.666667 NA Intergenic Intergenic -127111 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 179.5-42 chr9 28985311 28985664 + 0.666667 NA intron (NM_001354574, intron 1 of 5) L1MA7|LINE|L1 -96532 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 150.333-103 chr8 124336386 124336790 + 0.666667 NA intron (NM_194291, intron 1 of 6) L1MEf|LINE|L1 36111 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 138.667-75 chr5 53603175 53603557 + 0.666667 NA intron (NR_134475, intron 2 of 5) intron (NR_134475, intron 2 of 5) 42727 NR_134473 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 142-71 chr5 9223942 9224193 + 0.666667 NA intron (NM_003966, intron 8 of 22) MLT1L|LTR|ERVL-MaLR -170172 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 125.667-18 chr11 96509785 96510283 + 0.666667 NA intron (NR_135097, intron 1 of 3) intron (NR_135097, intron 1 of 3) 1609 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 134.167-31 chr17 29616116 29616383 + 0.666667 NA intron (NM_001351302, intron 5 of 6) CpG-10929 1868 NM_001351301 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 237.5-26 chr7 31337733 31338429 + 0.666667 NA 3' UTR (NM_022728, exon 2 of 2) 3' UTR (NM_022728, exon 2 of 2) 2645 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 171.167-39 chr4 85531839 85532148 + 0.666667 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 56843 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 136.667-46 chr2 138015150 138015488 + 0.666667 NA 3' UTR (NM_006895, exon 6 of 6) 3' UTR (NM_006895, exon 6 of 6) 50846 NM_006895 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 128.333-38 chr14 69837617 69837830 + 0.666667 NA Intergenic L1M8|LINE|L1 25963 NR_149012 100506358 NR_149012 LOC100506358 - uncharacterized LOC100506358 ncRNA 154.5-53 chr4 75639435 75639998 + 0.666667 NA Intergenic AluSq2|SINE|Alu -9188 NM_003948 8999 Hs.591698 NM_003948 ENSG00000138769 CDKL2 KKIAMRE|P56 cyclin dependent kinase like 2 protein-coding 182.5-22 chr2 64012001 64012366 + 0.666667 NA intron (NM_001005739, intron 1 of 22) intron (NM_001005739, intron 1 of 22) 7245 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 135.833-73 chr9 30734253 30734659 + 0.666667 NA Intergenic Intergenic -326002 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 185.5-43 chr6 49073610 49073904 + 0.666667 NA Intergenic Intergenic 389496 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 142.333-26 chr12 66038392 66038716 + 0.666667 NA Intergenic L1MEc|LINE|L1 -7488 NR_146530 105369810 NR_146530 ENSG00000256259 LINC02425 - long intergenic non-protein coding RNA 2425 ncRNA 142.5-54 chr4 43106130 43106397 + 0.666667 NA Intergenic Intergenic 212997 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 160.167-55 chr6 24028643 24029029 + 0.666667 NA Intergenic Intergenic -97379 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 141-51 chr20 53381071 53381355 + 0.666667 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -171557 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 181.5-35 chr22 46850671 46850959 + 0.666667 NA intron (NM_001284305, intron 4 of 12) L1MB7|LINE|L1 65227 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 149.5-62 chr7 118264950 118265422 + 0.666667 NA Intergenic Intergenic 40482 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 152.167-83 chr9 114114722 114115181 + 0.666667 NA Intergenic MER4B|LTR|ERV1 -15894 NM_138424 113220 Hs.28149 NM_138424 ENSG00000136883 KIF12 - kinesin family member 12 protein-coding 118-70 chr22 20219774 20220121 + 0.666667 NA Intergenic MLT1K|LTR|ERVL-MaLR 13615 NR_026919 150197 Hs.635544 NM_152508 ENSG00000236499 LINC00896 - long intergenic non-protein coding RNA 896 ncRNA 177.333-2 chr1 89455615 89455965 + 0.666667 NA Intergenic Intergenic 48111 NR_003133 400759 Hs.661968 NR_003133 ENSG00000225492 GBP1P1 - guanylate binding protein 1 pseudogene 1 pseudo 140.167-14 chr12 50633146 50633384 + 0.666667 NA intron (NM_173602, intron 2 of 37) intron (NM_173602, intron 2 of 37) 128280 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 147.667-2 chr1 45835510 45835819 + 0.666667 NA intron (NM_001324320, intron 3 of 29) L1MB5|LINE|L1 -28684 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 160-14 chr10 60179584 60179846 + 0.666667 NA intron (NM_001204403, intron 19 of 43) intron (NM_001204403, intron 19 of 43) -38699 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 202.667-21 chr2 21622297 21622859 + 0.666667 NA Intergenic HAL1|LINE|L1 88074 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 193.167-2 chr1 56919224 56919638 + 0.666667 NA Intergenic Intergenic 46584 NM_000066 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 187.5-8 chr11 103495096 103495406 + 0.666667 NA Intergenic LTR1C1|LTR|ERV1 -354655 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 169.667-16 chr12 18487869 18488207 + 0.666667 NA intron (NM_001288774, intron 18 of 32) intron (NM_001288774, intron 18 of 32) 226498 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 249.667-33 chr4 85561660 85562397 + 0.666667 NA intron (NM_001025616, intron 1 of 9) L2a|LINE|L2 86878 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 257.333-10 chr18 12675895 12676463 + 0.666667 NA intron (NM_001271989, intron 9 of 10) intron (NM_001271989, intron 9 of 10) 17440 NM_147163 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 182.833-29 chr20 22664330 22664690 + 0.666667 NA Intergenic Intergenic 20834 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 126.5-10 chr11 12588337 12588532 + 0.666667 NA Intergenic AluSz|SINE|Alu -85987 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 150.833-3 chr12 10250794 10251053 + 0.666667 NA intron (NM_001351060, intron 2 of 8) intron (NM_001351060, intron 2 of 8) 11962 NM_001351060 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 125.833-98 chr9 100407491 100407894 + 0.666667 NA Intergenic (TTTAT)n|Simple_repeat|Simple_repeat -19521 NM_080655 91283 Hs.530272 NM_080655 ENSG00000066697 MSANTD3 C9orf30|L8 Myb/SANT DNA binding domain containing 3 protein-coding 164.333-15 chr12 24111266 24111640 + 0.666667 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -100968 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 166.833-21 chr19 51589042 51589376 + 0.666667 NA 3' UTR (NM_007147, exon 5 of 5) 3' UTR (NM_007147, exon 5 of 5) 5171 NR_034159 729975 Hs.716785 NR_034159 LINC01530 - long intergenic non-protein coding RNA 1530 ncRNA 249.667-11 chr14 59180313 59180868 + 0.666667 NA Intergenic Intergenic -8077 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 155.333-39 chr18 13771539 13771833 + 0.666667 NA Intergenic L1PA15|LINE|L1 45013 NM_001308263 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 190-18 chr15 95458711 95459107 + 0.666667 NA intron (NR_027133, intron 3 of 5) intron (NR_027133, intron 3 of 5) 25816 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 166.167-57 chr7 27350247 27350592 + 0.666667 NA Intergenic MLT1G|LTR|ERVL-MaLR -103190 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 150.167-31 chr2 129441219 129441507 + 0.666667 NA Intergenic Intergenic -167472 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 188.333-28 chr19 41208682 41209217 + 0.666667 NA Intergenic AluSx1|SINE|Alu -10274 NM_001699 558 Hs.590970 NM_001699 ENSG00000167601 AXL ARK|JTK11|Tyro7|UFO AXL receptor tyrosine kinase protein-coding 116-81 chr6 46998235 46998426 + 0.666667 NA 3' UTR (NM_153840, exon 15 of 15) 3' UTR (NM_153840, exon 15 of 15) -43391 NM_015234 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 182.667-15 chr12 32855037 32855457 + 0.666667 NA intron (NM_001005242, intron 4 of 12) L1M5|LINE|L1 41599 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 118-49 chr17 71862138 71862413 + 0.666667 NA Intergenic AluSx3|SINE|Alu 163704 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 170.667-37 chr21 29471186 29471608 + 0.666667 NA Intergenic Tigger8|DNA|TcMar-Tigger -24650 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 181.5-40 chr3 106331548 106331925 + 0.666667 NA Intergenic Intergenic -462335 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 152.5-15 chr15 35597083 35597550 + 0.666667 NA intron (NR_038251, intron 1 of 2) intron (NR_038251, intron 1 of 2) 51121 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-DT ATPBD4-AS1|DPH6-AS1 DPH6 divergent transcript ncRNA 289-12 chr5 92145886 92146576 + 0.666667 NA Intergenic Intergenic -762914 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 189.833-24 chr5 140138670 140139030 + 0.666667 NA Intergenic Intergenic 12913 NM_001007189 492311 Hs.696360 NM_001007189 ENSG00000182700 IGIP C5orf53 IgA inducing protein protein-coding 137-19 chr11 78931915 78932153 + 0.666667 NA intron (NM_001098816, intron 6 of 33) MIR|SINE|MIR -357170 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 114.333-65 chr2 37192240 37192658 + 0.666667 NA intron (NM_001032377, intron 1 of 8) intron (NM_001032377, intron 1 of 8) 3638 NM_001032377 391365 Hs.631892 NM_001032377 ENSG00000138068 SULT6B1 ST6B1 sulfotransferase family 6B member 1 protein-coding 169.667-40 chr2 103484084 103484547 + 0.666667 NA Intergenic HSMAR2|DNA|TcMar-Mariner -499886 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 201.167-7 chr14 25763346 25763982 + 0.666667 NA Intergenic Intergenic -713367 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 147.5-45 chr2 105754833 105755201 + 0.666667 NA intron (NM_003581, intron 1 of 4) intron (NM_003581, intron 1 of 4) 9954 NM_001004722 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 235.167-12 chr2 161347708 161348233 + 0.666667 NA intron (NM_005805, intron 3 of 11) L1ME3G|LINE|L1 39545 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 148.833 chr1 31097621 31097939 + 0.666667 NA Intergenic AluSz|SINE|Alu -32063 NM_014676 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1|SCA47 pumilio RNA binding family member 1 protein-coding 140.667-76 chr6 151213750 151214005 + 0.666667 NA intron (NR_125868, intron 1 of 2) L1MA4A|LINE|L1 14580 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 194.667-67 chr9 2504766 2505332 + 0.666667 NA Intergenic MER3|DNA|hAT-Charlie -116738 NM_001322225 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 192.833-12 chr13 38918147 38918483 + 0.666667 NA Intergenic L1PA16|LINE|L1 72516 NM_145286 161003 Hs.327794 NM_145286 ENSG00000133115 STOML3 Epb7.2l|SRO stomatin like 3 protein-coding 135.333-25 chr15 69432199 69432428 + 0.666667 NA intron (NM_138555, intron 10 of 22) intron (NM_138555, intron 10 of 22) -17284 NR_132969 145694 Hs.147229 NR_132969 ENSG00000259426 LOC145694 - uncharacterized LOC145694 ncRNA 138.333-114 chr8 142920731 142921171 + 0.666667 NA Intergenic L1MCa|LINE|L1 -3108 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 137.167-58 chr7 26191038 26191548 + 0.666667 NA 3' UTR (NM_031243, exon 12 of 12) 3' UTR (NM_031243, exon 12 of 12) 9453 NM_031243 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 162-2 chr1 35968205 35968536 + 0.666667 NA intron (NM_024852, intron 3 of 18) L1MB3|LINE|L1 37265 NM_024852 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 133.333-9 chr10 12504521 12504870 + 0.666667 NA intron (NM_001351032, intron 3 of 11) intron (NM_001351032, intron 3 of 11) -74058 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 180-54 chr8 18778017 18778375 + 0.666667 NA intron (NM_015310, intron 8 of 15) L1MA4|LINE|L1 30671 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 164.333-63 chr6 39375795 39376210 + 0.666667 NA intron (NM_001289020, intron 15 of 21) intron (NM_001289020, intron 15 of 21) -53034 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 129.667-112 chrX 31961942 31962312 + 0.666667 NA intron (NM_000109, intron 45 of 78) MIR|SINE|MIR 193342 NM_004020 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 159-36 chr18 79978136 79978423 + 0.666667 NA intron (NM_001305564, intron 1 of 2) intron (NM_001305564, intron 1 of 2) 10284 NM_001305557 10907 Hs.465498 NM_006701 ENSG00000141759 TXNL4A BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD thioredoxin like 4A protein-coding 162.667-74 chr6 143259930 143260415 + 0.666667 NA intron (NM_001366354, intron 3 of 4) AluYc|SINE|Alu 95390 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 123.333-58 chr2 172304632 172304943 + 0.666667 NA Intergenic Intergenic -122549 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 139.333-20 chr11 9525275 9525518 + 0.666667 NA intron (NM_001282656, intron 15 of 15) intron (NM_001282656, intron 15 of 15) -48274 NM_003390 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 156.667-16 chr10 33681529 33681882 + 0.666667 NA Intergenic Intergenic 90975 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 197-25 chr2 121588921 121589371 + 0.666667 NA intron (NM_015282, intron 2 of 38) intron (NM_015282, intron 2 of 38) 58266 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 177.167-46 chr8 65709669 65710138 + 0.666667 NA 3' UTR (NM_014637, exon 8 of 8) 3' UTR (NM_014637, exon 8 of 8) 40030 NM_001145838 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 135-64 chr3 166140509 166140752 + 0.666667 NA Intergenic MER90a|LTR|ERV1 -303207 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 129.333-4 chr1 194378021 194378239 + 0.666667 NA Intergenic (TTC)n|Simple_repeat|Simple_repeat 1073385 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 220.667-18 chr2 161318882 161319306 + 0.666667 NA intron (NM_005805, intron 3 of 11) intron (NM_005805, intron 3 of 11) 10669 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 140.333-40 chr20 15284298 15284706 + 0.666667 NA intron (NM_001351663, intron 6 of 17) HAL1M8|LINE|L1 87662 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 237.333-39 chr8 103391102 103391537 + 0.666667 NA Intergenic MLT2B2|LTR|ERVL 18812 NM_001256099 115908 Hs.405614 NM_138455 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 166.833-44 chr8 121137314 121137712 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -325467 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 153.667-71 chr7 24844704 24844983 + 0.666667 NA intron (NM_145321, intron 10 of 20) intron (NM_145321, intron 10 of 20) 47778 NM_145322 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 117.167-98 chr9 91717570 91717804 + 0.666667 NA Intergenic MamRep434|DNA|TcMar-Tigger -81342 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 120.333-58 chr2 171889633 171889884 + 0.666667 NA intron (NR_047549, intron 2 of 16) MIR|SINE|MIR 4486 NM_003705 8604 Hs.470608 NM_003705 ENSG00000115840 SLC25A12 AGC1|ARALAR|EIEE39 solute carrier family 25 member 12 protein-coding 131.333-77 chr4 64683886 64684131 + 0.666667 NA Intergenic Intergenic -274548 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 193-42 chr8 84314652 84315075 + 0.666667 NA intron (NM_001354320, intron 2 of 9) L1MC5|LINE|L1 -100621 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 169-28 chr2 154522091 154522568 + 0.666667 NA Intergenic L1MA2|LINE|L1 -64891 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 184.167-12 chr10 104702853 104703249 + 0.666667 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -36835 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 166.333-16 chr11 88519609 88519944 + 0.666667 NA intron (NR_049724, intron 4 of 5) intron (NR_049724, intron 4 of 5) 15200 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 143.667-75 chr3 149633606 149633906 + 0.666667 NA intron (NM_001348362, intron 5 of 9) intron (NM_001348362, intron 5 of 9) 24269 NM_001168280 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 119.5-40 chr17 58031131 58031407 + 0.666667 NA Intergenic Intergenic -23923 NR_034041 6426 Hs.68714 NM_006924 ENSG00000136450 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine and arginine rich splicing factor 1 protein-coding 158.833-55 chr6 64542966 64543336 + 0.666667 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 736315 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 122-82 chr7 38292903 38293242 + 0.666667 NA Intergenic L1PA10|LINE|L1 -19425 NM_001003799 445347 Hs.534032 NM_001003799 TARP CD3G|TCRG|TCRGC1|TCRGC2|TCRGV TCR gamma alternate reading frame protein protein-coding 137.167-64 chr7 122188242 122188508 + 0.666667 NA Intergenic L1M3|LINE|L1 -44126 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 119.333-26 chr13 96903089 96903338 + 0.666667 NA Intergenic MLT1K|LTR|ERVL-MaLR 80959 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 149.833-40 chr5 40658113 40658584 + 0.666667 NA Intergenic MLT1F1|LTR|ERVL-MaLR -21567 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 128-51 chr2 150965240 150965477 + 0.666667 NA Intergenic L1ME3|LINE|L1 296505 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 156.667-45 chr18 6973383 6973679 + 0.666667 NA intron (NM_005559, intron 46 of 62) intron (NM_005559, intron 46 of 62) 18854 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 188.667-69 chr9 114479063 114479437 + 0.666667 NA intron (NM_015404, intron 1 of 11) MER68|LTR|ERVL 23965 NM_001083885 25861 Hs.93836 NM_015404 ENSG00000095397 WHRN CIP98|DFNB31|PDZD7B|USH2D|WI whirlin protein-coding 161.667-56 chr3 129686845 129687240 + 0.666667 NA intron (NM_001349271, intron 2 of 4) intron (NM_001349271, intron 2 of 4) 1690 NM_001349272 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 237.667-11 chr5 20534199 20534774 + 0.666667 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 41227 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 133.667-31 chr14 79840169 79840604 + 0.666667 NA intron (NM_138970, intron 5 of 5) intron (NM_138970, intron 5 of 5) -371033 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 134.833-24 chr2 30412967 30413376 + 0.666667 NA Intergenic Intergenic -34075 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 198.333-23 chr2 193126588 193127175 + 0.666667 NA Intergenic Intergenic 377036 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 124.667-127 chr8 141828314 141828529 + 0.666667 NA Intergenic Intergenic -42108 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 175.833-14 chr16 66599042 66599514 + 0.666667 NA Intergenic AluSz|SINE|Alu -4718 NM_001363923 123920 Hs.298198 NM_144601 ENSG00000140931 CMTM3 BNAS2|CKLFSF3 CKLF like MARVEL transmembrane domain containing 3 protein-coding 132-54 chr3 98398894 98399414 + 0.666667 NA Intergenic L1PBb|LINE|L1 8488 NM_001005516 403277 Hs.554709 NM_001005516 ENSG00000206536 OR5K3 - olfactory receptor family 5 subfamily K member 3 protein-coding 171.167-65 chrX 123011279 123011586 + 0.666667 NA Intergenic Intergenic -172811 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 116.333-100 chr8 56644008 56644182 + 0.666667 NA Intergenic MLT2C2|LTR|ERVL -84272 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 180.5-24 chr18 7345604 7346076 + 0.666667 NA Intergenic L1ME1|LINE|L1 114736 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 129.333-6 chr10 10196860 10197191 + 0.666667 NA Intergenic Intergenic 138303 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 182.333-28 chr19 32974152 32974627 + 0.666667 NA intron (NM_152266, intron 4 of 4) intron (NM_152266, intron 4 of 4) 2147 NM_001300978 91442 Hs.579899 NM_152266 ENSG00000131944 FAAP24 C19orf40 FA core complex associated protein 24 protein-coding 117.167-90 chr8 26495310 26495653 + 0.666667 NA Intergenic L1MEc|LINE|L1 18391 NM_007257 10687 Hs.591838 NM_007257 ENSG00000240694 PNMA2 MA2|MM2|RGAG2 PNMA family member 2 protein-coding 193.667-14 chr14 63031738 63032054 + 0.666667 NA intron (NM_139318, intron 1 of 10) intron (NM_139318, intron 1 of 10) 13562 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 233.5-23 chr7 20057893 20058318 + 0.666667 NA intron (NR_110114, intron 1 of 5) L1PB2|LINE|L1 82321 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 136.333-44 chr2 46648142 46648522 + 0.666667 NA Intergenic Intergenic 31117 NM_014171 9419 Hs.133998 NM_014171 ENSG00000119878 CRIPT HSPC139|SSMDF CXXC repeat containing interactor of PDZ3 domain protein-coding 221.833-21 chr5 146095196 146095947 + 0.666667 NA intron (NM_001029869, intron 2 of 3) intron (NM_001029869, intron 2 of 3) 10006 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 123.5-90 chr9 131691597 131691863 + 0.666667 NA intron (NM_001304275, intron 1 of 23) MER65-int|LTR|ERV1 18112 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 233.833-13 chr5 78193658 78194137 + 0.666667 NA intron (NM_003664, intron 7 of 26) AluY|SINE|Alu 100801 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 122.667-21 chr14 20245104 20245551 + 0.666667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 2535 NM_001004479 390442 Hs.553767 NM_001004479 ENSG00000176198 OR11H4 OR14-36 olfactory receptor family 11 subfamily H member 4 protein-coding 168.5-41 chr4 70287801 70288248 + 0.666667 NA Intergenic MLT1E2|LTR|ERVL-MaLR 45408 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 123.333-31 chr12 53037075 53037280 + 0.666667 NA intron (NM_001300821, intron 10 of 14) intron (NM_001300821, intron 10 of 14) -9849 NM_198316 23371 Hs.6147 NM_015319 ENSG00000111077 TNS2 C1-TEN|C1TEN|TENC1 tensin 2 protein-coding 167.5-47 chr4 104233269 104233849 + 0.666667 NA Intergenic Intergenic -257406 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 160.667-3 chr1 53566517 53566857 + 0.666667 NA intron (NM_147193, intron 3 of 9) MSTA|LTR|ERVL-MaLR 107288 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 115.333-99 chr7 30145543 30145787 + 0.666667 NA intron (NM_152793, intron 1 of 2) intron (NM_152793, intron 1 of 2) 10679 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 215.333-19 chr17 59873275 59873924 + 0.666667 NA intron (NM_001193612, intron 6 of 8) AluSx4|SINE|Alu 19344 NM_016261 51174 Hs.463638 NM_016261 ENSG00000108423 TUBD1 TUBD tubulin delta 1 protein-coding 170.667-30 chr17 61122303 61122766 + 0.666667 NA intron (NM_001330413, intron 23 of 25) UCON28b|Unknown|Unknown 245170 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 234.833-9 chr16 87997740 87998191 + 0.666667 NA intron (NM_017869, intron 4 of 11) intron (NM_017869, intron 4 of 11) 27947 NM_001173543 54971 Hs.461705 NM_017869 ENSG00000172530 BANP BEND1|SMAR1|SMARBP1 BTG3 associated nuclear protein protein-coding 129.667-7 chr10 63697058 63697426 + 0.666667 NA Intergenic AluSx|SINE|Alu -175352 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 231-12 chr17 70664071 70664654 + 0.666667 NA Intergenic Intergenic 494827 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 230.667-31 chr7 135725633 135726127 + 0.666667 NA intron (NM_001318192, intron 1 of 15) AluJr|SINE|Alu 2306 NM_012450 26266 Hs.490241 NM_012450 ENSG00000164707 SLC13A4 NAS2|SUT-1|SUT1 solute carrier family 13 member 4 protein-coding 115.167-17 chr10 65618685 65618949 + 0.666667 NA intron (NR_120647, intron 3 of 5) intron (NR_120647, intron 3 of 5) 47392 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 234-26 chr4 30398699 30399276 + 0.666667 NA Intergenic Intergenic -321382 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 163.833-56 chr8 28341642 28341939 + 0.666667 NA intron (NM_001284244, intron 2 of 2) intron (NM_001284244, intron 2 of 2) 3143 NM_001284244 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 201.333-7 chr10 65241372 65241859 + 0.666667 NA Intergenic L1MB8|LINE|L1 -317097 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 138.333-85 chr4 147317186 147317448 + 0.666667 NA Intergenic Intergenic 27400 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 203.667-12 chr15 83576804 83577145 + 0.666667 NA intron (NM_001324185, intron 7 of 9) AluSc5|SINE|Alu -77149 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 153.833-26 chr15 99763256 99763651 + 0.666667 NA Intergenic Intergenic -30009 NM_001284422 145748 Hs.562568 NM_152449 ENSG00000183060 LYSMD4 - LysM domain containing 4 protein-coding 143.333-3 chr1 205636204 205636489 + 0.666667 NA Intergenic AluSx|SINE|Alu -3474 NM_001973 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ETS transcription factor ELK4 protein-coding 117.667-47 chr16 24276983 24277228 + 0.666667 NA intron (NM_006539, intron 1 of 3) intron (NM_006539, intron 1 of 3) 21552 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 189.5-11 chr12 48515732 48516277 + 0.666667 NA Intergenic A-rich|Low_complexity|Low_complexity -9628 NM_001005203 341568 Hs.524373 NM_001005203 ENSG00000284723 OR8S1 - olfactory receptor family 8 subfamily S member 1 protein-coding 118.667-48 chr18 54169163 54169466 + 0.666667 NA intron (NM_003927, intron 3 of 6) intron (NM_003927, intron 3 of 6) 53098 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 327.667-11 chr5 128552848 128553484 + 0.666667 NA Intergenic L1PA5|LINE|L1 -14921 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 118.667-7 chr1 106786874 106787129 + 0.666667 NA Intergenic Intergenic -31238 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 226.667-19 chr3 89725136 89725690 + 0.666667 NA Intergenic L1MDa|LINE|L1 617792 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 118-44 chr16 67873154 67873430 + 0.666667 NA TTS (NM_005796) TTS (NM_005796) 240 NM_014329 23644 Hs.75682 NM_014329 ENSG00000038358 EDC4 GE1|Ge-1|HEDL5|HEDLS|RCD-8|RCD8 enhancer of mRNA decapping 4 protein-coding 124-102 chr8 138910905 138911220 + 0.666667 NA intron (NM_152888, intron 1 of 64) L3|LINE|CR1 2979 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 165.667-36 chr2 60841201 60841606 + 0.666667 NA Intergenic Intergenic 39911 NR_033980 400957 Hs.170358 NR_033980 ENSG00000228414 LINC01185 - long intergenic non-protein coding RNA 1185 ncRNA 131.167-27 chr14 64970876 64971174 + 0.666667 NA intron (NM_001330182, intron 1 of 7) intron (NM_001330182, intron 1 of 7) 1311 NM_198686 376267 Hs.512492 NM_198686 ENSG00000139998 RAB15 - RAB15, member RAS oncogene family protein-coding 147.833-21 chr14 70713626 70714018 + 0.666667 NA Intergenic Intergenic 15124 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 132-5 chr1 86997796 86998185 + 0.666667 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) 83355 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 126.667-60 chr3 190013029 190013294 + 0.666667 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 107736 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 243-24 chr4 102264314 102264890 + 0.666667 NA intron (NM_022154, intron 7 of 7) Tigger1|DNA|TcMar-Tigger 59710 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 193.667-22 chr17 79021456 79021931 + 0.666667 NA intron (NR_040019, intron 1 of 2) MIR|SINE|MIR -1241 NM_153372 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and TNF related 1 protein-coding 210.5-6 chr10 102924352 102924911 + 0.666667 NA intron (NM_199076, intron 1 of 6) FLAM_C|SINE|Alu -6296 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 179.333-53 chr7 88022839 88023402 + 0.666667 NA intron (NM_001324421, intron 3 of 28) L1M1|LINE|L1 88869 NM_001324420 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 130-13 chr10 33051953 33052337 + 0.666667 NA Intergenic Intergenic 64662 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 227.5-18 chr3 30860572 30861137 + 0.666667 NA intron (NM_207359, intron 2 of 14) MIR|SINE|MIR 33807 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 143.333 chr1 161412328 161412716 + 0.666667 NA Intergenic LTR5B|LTR|ERVK -44639 NM_001013625 257177 Hs.534593 NM_001013625 ENSG00000188931 CFAP126 C1orf192|Flattop|Fltp cilia and flagella associated protein 126 protein-coding 316-12 chr8 125289596 125290621 + 0.666667 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -140250 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 141.333-76 chr5 81509978 81510248 + 0.666667 NA intron (NM_001256734, intron 4 of 15) L2c|LINE|L2 -115979 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 144.5-67 chr4 66723938 66724285 + 0.666667 NA Intergenic Intergenic 447287 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 128.833-65 chr4 71465556 71465786 + 0.666667 NA intron (NM_003759, intron 9 of 22) intron (NM_003759, intron 9 of 22) 126618 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 133-18 chr11 115964567 115964965 + 0.666667 NA Intergenic Intergenic -204566 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 162.5-26 chr19 48850805 48851240 + 0.666667 NA intron (NM_020904, intron 13 of 19) AluSx1|SINE|Alu -14531 NM_016246 51171 Hs.18788 NM_016246 ENSG00000087076 HSD17B14 DHRS10|SDR47C1|retSDR3 hydroxysteroid 17-beta dehydrogenase 14 protein-coding 159.167-47 chr4 53860059 53860355 + 0.666667 NA Intergenic L1MEg|LINE|L1 127075 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 123-16 chr13 25565000 25565220 + 0.666667 NA intron (NM_016529, intron 16 of 36) L1PB1|LINE|L1 96336 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 199.666 chr1 44373953 44374545 + 0.666667 NA Intergenic LTR16A|LTR|ERVL -18970 NM_001301700 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 151-60 chr5 19216153 19216380 + 0.666667 NA Intergenic Intergenic 670006 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 251.667-22 chr7 31018106 31018613 + 0.666667 NA Intergenic Charlie8|DNA|hAT-Charlie -33949 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 128-11 chr10 54553716 54554108 + 0.666667 NA intron (NM_001142771, intron 2 of 34) intron (NM_001142771, intron 2 of 34) 54045 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 117.333-104 chr8 41793013 41793212 + 0.666667 NA intron (NM_001142446, intron 1 of 42) AluJo|SINE|Alu 4510 NM_000037 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 130.833-26 chr18 47850899 47851222 + 0.666667 NA intron (NM_001003652, intron 7 of 10) intron (NM_001003652, intron 7 of 10) 79599 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 147.833-57 chr5 123762538 123763087 + 0.666667 NA Intergenic L1MA4|LINE|L1 217395 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 120-96 chr6 51430597 51430790 + 0.666667 NA Intergenic MER124|DNA?|DNA? -191177 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 149.333-6 chr1 100487715 100487969 + 0.666667 NA intron (NM_001319212, intron 10 of 13) intron (NM_001319212, intron 10 of 13) -50297 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 135.833-59 chr5 109471839 109472367 + 0.666667 NA Intergenic Intergenic -62129 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 202.167-33 chr7 119417161 119417516 + 0.666667 NA Intergenic LOR1-int|LTR|ERV1 490037 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 113.833-70 chr5 41156494 41156871 + 0.666667 NA intron (NM_000065, intron 13 of 17) intron (NM_000065, intron 13 of 17) 56850 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 168-2 chr1 101722318 101722803 + 0.666667 NA Intergenic Intergenic 124520 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 131-14 chr12 17388259 17388558 + 0.666667 NA Intergenic L2b|LINE|L2 200670 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 128.5-33 chr18 8358819 8359352 + 0.666667 NA intron (NM_002845, intron 21 of 30) intron (NM_002845, intron 21 of 30) 7949 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 161.167-62 chr9 109069686 109070134 + 0.666667 NA intron (NM_032012, intron 9 of 17) L2|LINE|L2 -23612 NR_029506 407036 NR_029506 ENSG00000207698 MIR32 MIRN32|hsa-mir-32|miR-32|miRNA32 microRNA 32 ncRNA 158.333-78 chr9 106373619 106373856 + 0.666667 NA Intergenic MIR1_Amn|SINE|MIR -227191 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 212.167-6 chr12 60120178 60120744 + 0.666667 NA Intergenic Intergenic 431091 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 132.5-91 chr7 52040023 52040368 + 0.666667 NA Intergenic L1ME3A|LINE|L1 -646939 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 171.667-27 chr14 97189119 97189551 + 0.666667 NA Intergenic Intergenic 34478 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 143.167-32 chr2 53439141 53439528 + 0.666667 NA Intergenic Intergenic -328449 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 203-36 chr6 12618747 12619318 + 0.666667 NA Intergenic HAL1|LINE|L1 -33628 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 124.667-57 chr2 20832671 20833061 + 0.666667 NA Intergenic Intergenic -9736 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 137.667-52 chr2 65365771 65366009 + 0.666667 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) 888 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 188.333-43 chr4 73832053 73832507 + 0.666667 NA Intergenic Intergenic -4398 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 131.667-28 chr12 96291656 96291921 + 0.666667 NA intron (NM_002595, intron 10 of 16) AluSx1|SINE|Alu 36290 NM_001303511 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ETS transcription factor ELK3 protein-coding 124.333-76 chr5 35277987 35278402 + 0.666667 NA Intergenic L1MA6|LINE|L1 -47707 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 138.333-48 chr17 32976553 32976822 + 0.666667 NA Intergenic Intergenic -15160 NM_001317226 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 159-47 chr20 58591009 58591296 + 0.666667 NA intron (NR_034147, intron 6 of 6) intron (NR_034147, intron 6 of 6) -43620 NR_125359 79160 Hs.280135 NR_125359 ENSG00000268941 LINC01711 - long intergenic non-protein coding RNA 1711 ncRNA 173.5-37 chr3 96354640 96354976 + 0.666667 NA Intergenic Intergenic -5156 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 120.833-53 chr4 129679899 129680101 + 0.666667 NA Intergenic Intergenic 91478 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 214.667-14 chr14 60597696 60598194 + 0.666667 NA Intergenic L1M6B|LINE|L1 -41271 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 138.333-64 chr2 161669793 161670205 + 0.666667 NA intron (NM_001354451, intron 1 of 25) MIR|SINE|MIR 45583 NM_001354445 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 169.333-11 chr10 122742558 122742894 + 0.666667 NA Intergenic L1MA10|LINE|L1 -13968 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 135.667-49 chr2 38569025 38569409 + 0.666667 NA exon (NM_001142650, exon 11 of 14) exon (NM_001142650, exon 11 of 14) 33711 NM_138394 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 199.167 chr1 244135757 244136065 + 0.666667 NA Intergenic Charlie24|DNA|hAT-Charlie 82706 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 132-53 chr3 94198891 94199196 + 0.666667 NA Intergenic L1PB1|LINE|L1 135982 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 167.667-45 chr2 128923549 128923888 + 0.666667 NA Intergenic Intergenic 59118 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 152-14 chr11 42918675 42918954 + 0.666667 NA Intergenic Intergenic 350555 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 186.167-8 chr10 59225908 59226334 + 0.666667 NA intron (NM_001143774, intron 1 of 4) intron (NM_001143774, intron 1 of 4) 48654 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 237.333-10 chr17 71071623 71072146 + 0.666667 NA Intergenic Intergenic 130295 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 170.667-78 chr8 111676912 111677334 + 0.666667 NA Intergenic Intergenic 300484 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 120.667-51 chr17 58909337 58909743 + 0.666667 NA intron (NM_014906, intron 1 of 6) AluJr4|SINE|Alu 153671 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 133-2 chr1 40328527 40328876 + 0.666667 NA Intergenic L1MD2|LINE|L1 -11415 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 129.333-76 chr6 38021749 38022062 + 0.666667 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 202178 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 184.5-21 chr17 70962988 70963553 + 0.666667 NA Intergenic L1MC2|LINE|L1 238909 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 181.833-25 chr2 68636752 68637188 + 0.666667 NA Intergenic AluJb|SINE|Alu -6618 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 245.333-13 chr4 30458767 30459195 + 0.666667 NA Intergenic Intergenic -261388 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 167.833-36 chr3 104053100 104053540 + 0.666667 NA Intergenic L1MA3|LINE|L1 -529204 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 125-19 chr11 37183456 37183643 + 0.666667 NA Intergenic Intergenic -585270 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 119-64 chr3 7428665 7428931 + 0.666667 NA intron (NM_000844, intron 5 of 9) intron (NM_000844, intron 5 of 9) 106486 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 114-34 chr12 78292438 78292698 + 0.666667 NA Intergenic Intergenic 67178 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 116.667-68 chr22 33398606 33398831 + 0.666667 NA intron (NM_133642, intron 7 of 14) MLT1C|LTR|ERVL-MaLR 37951 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 140.333-59 chr4 113834638 113834880 + 0.666667 NA Intergenic Intergenic -72832 NM_172127 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 249-19 chr8 50555520 50556086 + 0.666667 NA intron (NR_135795, intron 12 of 18) intron (NR_135795, intron 12 of 18) 391672 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 126.833-44 chr3 40951901 40952174 + 0.666667 NA Intergenic L1MA9|LINE|L1 -247468 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 228.334-8 chr5 84964115 84964859 + 0.666667 NA Intergenic Intergenic -579607 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 132.667-16 chr11 19456610 19457083 + 0.666667 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 50383 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 156.5-23 chr12 14540991 14541313 + 0.666667 NA intron (NM_024829, intron 3 of 10) intron (NM_024829, intron 3 of 10) -26580 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 151.333-2 chr1 180065895 180066307 + 0.666667 NA intron (NM_014810, intron 27 of 37) intron (NM_014810, intron 27 of 37) -88732 NM_001004128 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 124.333-16 chr11 78774679 78774977 + 0.666667 NA intron (NM_001098816, intron 17 of 33) intron (NM_001098816, intron 17 of 33) -199964 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 174.167-2 chr1 118357845 118358315 + 0.666667 NA Intergenic L1ME2|LINE|L1 -172852 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 135.833-4 chr10 82416448 82416759 + 0.666667 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -183683 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 113.333-115 chr9 99807425 99807644 + 0.666667 NA intron (NR_109802, intron 1 of 6) intron (NR_109802, intron 1 of 6) 12355 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 179.333-58 chr9 119474581 119474994 + 0.666667 NA Intergenic L1MB8|LINE|L1 -105352 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 139.5-46 chr4 74333916 74334337 + 0.666667 NA Intergenic LTR27E|LTR|ERV1 25656 NM_001270993 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 152.333-53 chr5 52844583 52844955 + 0.666667 NA intron (NM_181501, intron 1 of 28) intron (NM_181501, intron 1 of 28) 56853 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 132-100 chr9 92184386 92184722 + 0.666667 NA 3' UTR (NM_001350291, exon 4 of 4) 3' UTR (NM_001350291, exon 4 of 4) 6602 NM_001350291 138652 Hs.742918 NM_001350291 PRSS47 - serine protease 47 protein-coding 119.667-48 chr2 156767836 156768265 + 0.666667 NA Intergenic L1MEf|LINE|L1 331671 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 211.167-7 chr12 23118350 23118981 + 0.666667 NA Intergenic MIRc|SINE|MIR -56971 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 172.5-62 chr8 128091316 128091700 + 0.666667 NA intron (NR_003367, intron 6 of 8) intron (NR_003367, intron 6 of 8) 42356 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 164.667-22 chr12 65810341 65810797 + 0.666667 NA intron (NR_026825, intron 1 of 1) intron (NR_026825, intron 1 of 1) -13891 NM_001300919 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 217-36 chr8 126111224 126111840 + 0.666667 NA Intergenic MIRb|SINE|MIR -160335 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 127-91 chr7 19816330 19816704 + 0.666667 NA Intergenic Intergenic -42900 NM_001366628 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 209.667-16 chr16 10705929 10706419 + 0.666667 NA Intergenic SATR1|Satellite|Satellite -11244 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 208.667-15 chr14 45921458 45922036 + 0.666667 NA Intergenic L1ME1|LINE|L1 -142412 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 151.333-78 chr7 5532007 5532400 + 0.666667 NA Intergenic Intergenic -1602 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 130-6 chr1 163796341 163796604 + 0.666667 NA Intergenic Intergenic -373281 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 243.333-3 chr10 124961267 124961790 + 0.666667 NA intron (NM_017580, intron 1 of 8) intron (NM_017580, intron 1 of 8) 19405 NM_017580 54764 Hs.595158 NM_017580 ENSG00000019995 ZRANB1 TRABID zinc finger RANBP2-type containing 1 protein-coding 168.667-31 chr2 56399167 56399645 + 0.666667 NA Intergenic L1MC1|LINE|L1 -213636 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 161.667-40 chr2 38401977 38402300 + 0.666667 NA Intergenic Intergenic -23554 NM_001330462 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 168.667-66 chr6 21035852 21036255 + 0.666667 NA intron (NM_017774, intron 11 of 15) Cheshire|DNA|hAT-Charlie 475839 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 123.5-73 chr6 142586363 142586671 + 0.666667 NA intron (NR_027312, intron 1 of 2) Charlie17b|DNA|hAT-Charlie 51319 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 181.333-11 chr12 18228622 18229152 + 0.666667 NA Intergenic L2a|LINE|L2 -32653 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 250.167-2 chr10 14040827 14041359 + 0.666667 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) -32543 NM_001318336 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 149.833 chr1 89239364 89239792 + 0.666667 NA Intergenic L1PA14|LINE|L1 33282 NM_052942 115362 Hs.513726 NM_052942 ENSG00000154451 GBP5 GBP-5 guanylate binding protein 5 protein-coding 197.667-26 chr16 64878010 64878362 + 0.666667 NA Intergenic Intergenic 243877 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 214.333-35 chr5 16461127 16461510 + 0.666667 NA intron (NM_033414, intron 3 of 5) L2a|LINE|L2 4482 NM_033414 90441 Hs.60300 NM_033414 ENSG00000173545 ZNF622 ZPR9 zinc finger protein 622 protein-coding 162.5-14 chr11 108385535 108385815 + 0.666667 NA intron (NR_147053, intron 9 of 12) AluY|SINE|Alu 81854 NM_001351110 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 119.667-20 chr13 96002880 96003165 + 0.666667 NA intron (NM_020121, intron 5 of 38) MER70A|LTR|ERVL 50379 NM_020121 55757 Hs.193226 NM_020121 ENSG00000102595 UGGT2 HUGT2|UGCGL2|UGT2 UDP-glucose glycoprotein glucosyltransferase 2 protein-coding 212.167-24 chr8 90196326 90197269 + 0.666667 NA Intergenic Intergenic -24691 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 204-6 chr14 60475638 60476013 + 0.666667 NA intron (NM_174978, intron 5 of 17) L4_A_Mam|LINE|RTE-X 10238 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 202.167-34 chr8 81179367 81179793 + 0.666667 NA Intergenic Intergenic -67512 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 217.5-49 chr7 94650709 94651281 + 0.666667 NA intron (NM_001346719, intron 1 of 12) CR1-3_Croc|LINE|CR1 5138 NM_001346713 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 282-10 chr15 87246203 87246706 + 0.666667 NA Intergenic Intergenic -258028 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 140.834 chr18 42631605 42632240 + 0.666667 NA intron (NR_046174, intron 7 of 9) L2c|LINE|L2 445254 NR_046174 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 174-55 chr6 147770886 147771345 + 0.666667 NA Intergenic Intergenic 262425 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 349.5-2 chr17 60315438 60316223 + 0.666667 NA intron (NM_032582, intron 2 of 33) intron (NM_032582, intron 2 of 33) 76303 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 166.833-43 chr8 120530610 120530911 + 0.666667 NA Intergenic Intergenic 85341 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 182.667-22 chr14 85046316 85046662 + 0.666667 NA Intergenic MER9a3|LTR|ERVK -225443 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 154-70 chr7 27265702 27266088 + 0.666667 NA Intergenic L1ME1|LINE|L1 -18666 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 146.667-71 chr5 171959690 171960062 + 0.666667 NA intron (NM_012300, intron 1 of 12) AluSz|SINE|Alu 46997 NM_033644 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 237.333 chr1 68523342 68523926 + 0.666667 NA intron (NR_110671, intron 1 of 2) intron (NR_110671, intron 1 of 2) -26552 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 145.5-77 chr8 81540692 81540953 + 0.666667 NA Intergenic L1MD3|LINE|L1 -9432 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 151.5-74 chr9 31199862 31200155 + 0.666667 NA Intergenic Tigger4a|DNA|TcMar-Tigger 181482 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 134.5-10 chr1 234777228 234777607 + 0.666667 NA Intergenic Intergenic -17361 NR_148962 100130249 Hs.617350 NR_148962 ENSG00000279261 PP2672 - uncharacterized LOC100130249 ncRNA 119.833-91 chr9 29047252 29047748 + 0.666667 NA intron (NM_001354574, intron 1 of 5) L1MA1|LINE|L1 -158545 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 196.334-4 chr12 4605877 4606397 + 0.666667 NA intron (NM_001371301, intron 11 of 14) Charlie2b|DNA|hAT-Charlie 1274 NM_001282286 8798 Hs.439530 NM_003845 ENSG00000010219 DYRK4 - dual specificity tyrosine phosphorylation regulated kinase 4 protein-coding 137.667-22 chr12 59461921 59462272 + 0.666667 NA Intergenic L1M4|LINE|L1 -133933 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 157-50 chr21 16324397 16324748 + 0.666667 NA intron (NR_027790, intron 4 of 7) (TA)n|Simple_repeat|Simple_repeat -39804 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 255.833-5 chr14 55235361 55235821 + 0.666667 NA Intergenic L1MA6|LINE|L1 -35830 NM_017943 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 199.667-57 chr6 162007344 162007862 + 0.666667 NA intron (NM_013988, intron 2 of 8) intron (NM_013988, intron 2 of 8) 536626 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 162.5-60 chr5 124739688 124740038 + 0.666667 NA intron (NM_020747, intron 1 of 8) intron (NM_020747, intron 1 of 8) 5249 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 122.333-34 chr14 51603547 51603850 + 0.666667 NA intron (NM_001042481, intron 2 of 14) MIRb|SINE|MIR -3746 NR_051990 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 149.667-24 chr15 37747783 37748119 + 0.666667 NA Intergenic L1PA16|LINE|L1 -186656 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 132.667-104 chrX 55293171 55293548 + 0.666667 NA Intergenic L1PA13|LINE|L1 13271 NR_130179 100421746 Hs.662612 NR_130179 ENSG00000232765 LOC100421746 - PAGE family member 5 pseudogene pseudo 204.5-30 chr5 78889254 78889601 + 0.666667 NA intron (NM_198709, intron 5 of 7) intron (NM_198709, intron 5 of 7) 95883 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 146.833-10 chr12 15046516 15046832 + 0.666667 NA Intergenic Intergenic 44841 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 118.5-94 chr8 131239196 131239444 + 0.666667 NA Intergenic MIR1_Amn|SINE|MIR -198411 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 185-36 chr3 173051774 173052268 + 0.666667 NA intron (NM_031955, intron 2 of 10) AluSx|SINE|Alu 89214 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 121.5 chr1 19686856 19687090 + 0.666667 NA intron (NM_001349112, intron 14 of 14) AluSx|SINE|Alu 22098 NM_000871 3362 Hs.22180 NM_000871 ENSG00000158748 HTR6 5-HT6|5-HT6R 5-hydroxytryptamine receptor 6 protein-coding 196.333-52 chr7 43894064 43894509 + 0.666667 NA intron (NM_001077664, intron 1 of 5) L1MA5|LINE|L1 12310 NM_001204871 100534592 NM_001204871 ENSG00000270617 URGCP-MRPS24 - URGCP-MRPS24 readthrough protein-coding 235-31 chr7 99212393 99213063 + 0.666667 NA Intergenic AluJr|SINE|Alu -5239 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 IPOA8 karyopherin subunit alpha 7 protein-coding 126.667-71 chr4 119770508 119770844 + 0.666667 NA Intergenic Intergenic 33839 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 123.167-48 chr2 54125135 54125584 + 0.666667 NA intron (NM_001320588, intron 1 of 3) Ricksha|DNA|MULE-MuDR 2076 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 117.333-72 chr3 98618519 98618748 + 0.666667 NA Intergenic Intergenic -25022 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 182-9 chr11 3815707 3816101 + 0.666667 NA intron (NR_045926, intron 3 of 5) intron (NR_045926, intron 3 of 5) 7344 NR_144430 27315 Hs.133968 NM_014489 ENSG00000148985 PGAP2 CWH43-N|FRAG1|HPMRS3|MRT17|MRT21 post-GPI attachment to proteins 2 protein-coding 184-34 chr3 67843554 67843974 + 0.666667 NA intron (NR_109992, intron 4 of 6) MIRb|SINE|MIR -147828 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 184.333-9 chr13 81441577 81442089 + 0.666667 NA Intergenic Intergenic -214850 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 153-48 chr7 7159136 7159543 + 0.666667 NA Intergenic A-rich|Low_complexity|Low_complexity -23276 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 152.5-16 chr15 58743458 58744003 + 0.666667 NA intron (NM_001320570, intron 1 of 14) AluSq2|SINE|Alu 5977 NM_001320570 102 Hs.172028 NM_001110 ENSG00000137845 ADAM10 AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz ADAM metallopeptidase domain 10 protein-coding 174.667-37 chr2 215261060 215261469 + 0.666667 NA Intergenic Intergenic -50795 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 125.5-63 chr5 101571731 101572038 + 0.666667 NA Intergenic MIR|SINE|MIR -668602 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 113.333-107 chr8 99120247 99120578 + 0.666667 NA intron (NR_047582, intron 8 of 8) intron (NR_047582, intron 8 of 8) 107146 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 158.667-93 chr9 6500963 6501362 + 0.666667 NA intron (NM_152896, intron 14 of 15) intron (NM_152896, intron 14 of 15) 87963 NM_152896 115426 Hs.493401 NM_152896 ENSG00000147854 UHRF2 NIRF|RNF107|TDRD23|URF2 ubiquitin like with PHD and ring finger domains 2 protein-coding 144.333-61 chr4 18870306 18870642 + 0.666667 NA Intergenic MER4E1|LTR|ERV1 -848599 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 128-61 chr3 6979214 6979609 + 0.666667 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -85394 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 137-98 chr9 28259683 28259997 + 0.666667 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 459465 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 145.333-29 chr14 82278952 82279305 + 0.666667 NA Intergenic MLT1J|LTR|ERVL-MaLR -363504 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 131-11 chr11 113337079 113337655 + 0.666667 NA intron (NM_001318533, intron 8 of 21) L2a|LINE|L2 22784 NM_017868 54970 Hs.288772 NM_017868 ENSG00000149292 TTC12 TPARM tetratricopeptide repeat domain 12 protein-coding 187.833-21 chr2 48667566 48668064 + 0.666667 NA intron (NM_172311, intron 8 of 10) intron (NM_172311, intron 8 of 10) 49959 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 127.667-20 chr12 2201565 2201907 + 0.666667 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 21745 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 218.167-28 chr8 88061714 88062129 + 0.666667 NA intron (NM_005941, intron 7 of 9) intron (NM_005941, intron 7 of 9) -187906 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 117-86 chr5 25891717 25892010 + 0.666667 NA Intergenic PABL_A|LTR|ERV1 700910 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 190.667-57 chr8 85115662 85116111 + 0.666667 NA intron (NM_033402, intron 6 of 18) L1M6|LINE|L1 8648 NM_033402 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 163-2 chr1 50085692 50086042 + 0.666667 NA intron (NM_001324208, intron 1 of 6) intron (NM_001324208, intron 1 of 6) -18042 NM_001144776 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 169.667-35 chr2 41415353 41415667 + 0.666667 NA Intergenic MIRb|SINE|MIR -462045 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 238-9 chr15 60901202 60901725 + 0.666667 NA intron (NM_134261, intron 1 of 10) AluSq2|SINE|Alu 219894 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 163.667-7 chr10 7969730 7970051 + 0.666667 NA intron (NM_031923, intron 3 of 6) MIR|SINE|MIR 82601 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 202.667-23 chr2 50786615 50787057 + 0.666667 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -90574 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 150-52 chr3 104225391 104225724 + 0.666667 NA Intergenic Intergenic -701441 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 145-76 chr6 28357527 28357871 + 0.666667 NA intron (NM_001242894, intron 2 of 6) intron (NM_001242894, intron 2 of 6) -1428 NM_001135215 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 142.333-11 chr10 57498733 57499191 + 0.666667 NA Intergenic HERV35I-int|LTR|ERV1 -194403 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 117.333-9 chr1 160251373 160251718 + 0.666667 NA intron (NR_028104, intron 1 of 12) AluJb|SINE|Alu -10204 NR_147618 100287049 Hs.657648 NR_147618 ENSG00000228606 LOC100287049 - uncharacterized LOC100287049 ncRNA 128.333-101 chr5 129105190 129105459 + 0.666667 NA exon (NM_016048, exon 3 of 5) exon (NM_016048, exon 3 of 5) 7636 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 258.5-6 chr10 90463517 90463949 + 0.666667 NA intron (NR_110657, intron 2 of 6) L2a|LINE|L2 77072 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 157-52 chr21 35112071 35112345 + 0.666667 NA Intergenic Intergenic -62910 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 125-39 chr18 63139535 63139804 + 0.666667 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 179711 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 168.833-24 chr19 52233857 52234336 + 0.666667 NA Intergenic AluSx1|SINE|Alu 12076 NR_106859 102466984 NR_106859 ENSG00000274380 MIR6801 hsa-mir-6801 microRNA 6801 ncRNA 193.5-14 chr14 59144476 59144862 + 0.666667 NA Intergenic L2|LINE|L2 -43998 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 184.667-8 chr11 10223987 10224360 + 0.666667 NA intron (NM_030962, intron 1 of 39) Tigger2b_Pri|DNA|TcMar-Tigger 70034 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 147.5-2 chr1 51545828 51546317 + 0.666667 NA Intergenic AluJb|SINE|Alu -26806 NM_001981 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 233.667-21 chr5 133438017 133438458 + 0.666667 NA intron (NM_015082, intron 3 of 15) L1ME4a|LINE|L1 -10531 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 130.833-5 chr1 186178002 186178291 + 0.666667 NA intron (NM_031935, intron 103 of 106) intron (NM_031935, intron 103 of 106) -118127 NM_001127708 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 163.333-58 chr4 86293318 86293697 + 0.666667 NA intron (NM_001363657, intron 2 of 13) LTR16C|LTR|ERVL 61137 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 114-103 chr9 3772215 3772442 + 0.666667 NA Intergenic L2c|LINE|L2 104242 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 142-55 chr20 54344833 54345223 + 0.666667 NA Intergenic MER20|DNA|hAT-Charlie -130565 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 168.666-3 chr5 80769127 80769630 + 0.666667 NA intron (NM_002439, intron 15 of 23) intron (NM_002439, intron 15 of 23) -114395 NM_001290354 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 156-27 chr14 54221607 54221941 + 0.666667 NA Intergenic Intergenic -175094 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 259-3 chr10 115127396 115128063 + 0.666667 NA intron (NM_001276282, intron 4 of 7) intron (NM_001276282, intron 4 of 7) 34364 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 162.667-34 chr18 5726719 5727137 + 0.666667 NA Intergenic Intergenic -21891 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 118-71 chr22 21811931 21812185 + 0.666667 NA intron (NM_002745, intron 1 of 8) L1M2|LINE|L1 55622 NM_138957 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 142.667-59 chr20 40257604 40257946 + 0.666667 NA Intergenic Intergenic 253314 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 121.167-41 chr2 99836393 99836802 + 0.666667 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) 268986 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 158-22 chr17 10079319 10079779 + 0.666667 NA intron (NM_201433, intron 1 of 13) MER4B|LTR|ERV1 -42892 NM_201432 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 173-36 chr3 81788241 81788704 + 0.666667 NA Intergenic Intergenic -26827 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 172-19 chr13 25218953 25219315 + 0.666667 NA Intergenic Intergenic 37802 NR_120427 102723318 Hs.549877 NR_120427 LINC01053 - long intergenic non-protein coding RNA 1053 ncRNA 180.667-55 chr4 155084879 155085351 + 0.666667 NA Intergenic Intergenic -123521 NM_000910 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 216.167-13 chr2 177999433 178000233 + 0.666667 NA intron (NM_001077197, intron 3 of 20) intron (NM_001077197, intron 3 of 20) 72944 NM_016953 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 191.5-20 chr16 74127792 74128401 + 0.666667 NA Intergenic Intergenic 87425 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 224.667-33 chr9 7705502 7706034 + 0.666667 NA Intergenic Intergenic 94010 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 136.167-34 chr2 11228153 11228437 + 0.666667 NA intron (NM_001321643, intron 5 of 32) intron (NM_001321643, intron 5 of 32) 72828 NM_001282711 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 133.5-82 chr8 105954672 105955054 + 0.666667 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 105640 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 141.5-47 chr2 117672780 117673035 + 0.666667 NA Intergenic Charlie22a|DNA|hAT-Charlie -141784 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 130.667-18 chr12 40417386 40417725 + 0.666667 NA intron (NM_173600, intron 11 of 173) intron (NM_173600, intron 11 of 173) 24161 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 197.167-28 chr2 104437662 104437964 + 0.666667 NA intron (NR_015399, intron 1 of 3) intron (NR_015399, intron 1 of 3) 3466 NR_015399 150568 Hs.107284 NR_015399 ENSG00000235597 LINC01102 - long intergenic non-protein coding RNA 1102 ncRNA 160.167-63 chr9 27034710 27035037 + 0.666667 NA intron (NM_025103, intron 13 of 19) MIR|SINE|MIR -29201 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 241-17 chr3 64636105 64636638 + 0.666667 NA intron (NM_001318781, intron 11 of 38) MIR|SINE|MIR -48499 NR_038264 100507098 Hs.660881 NR_038264 ENSG00000241684 ADAMTS9-AS2 - ADAMTS9 antisense RNA 2 ncRNA 160-2 chr1 86946223 86946490 + 0.666667 NA intron (NM_012262, intron 1 of 6) MIR3|SINE|MIR 31721 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 143-76 chr7 83634866 83635421 + 0.666667 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 6288 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 155.833-41 chr3 133236057 133236379 + 0.666667 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) 20903 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 202.167-27 chr5 33792758 33793375 + 0.666667 NA intron (NM_001324511, intron 2 of 2) intron (NM_001324511, intron 2 of 2) 98924 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 138-115 chr9 90599678 90600062 + 0.666667 NA Intergenic MER74A|LTR|ERVL -17124 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 171.667-42 chr2 222679509 222679821 + 0.666667 NA intron (NM_058165, intron 1 of 5) L1MC4|LINE|L1 8007 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 158.667-95 chr9 86037038 86037430 + 0.666667 NA intron (NM_016548, intron 6 of 9) AluSx1|SINE|Alu 62324 NM_016548 51280 Hs.494337 NM_016548 ENSG00000135052 GOLM1 C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3 golgi membrane protein 1 protein-coding 158.333-30 chr15 41123127 41123407 + 0.666667 NA Intergenic AluJb|SINE|Alu -6987 NM_017553 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1 INO80 complex ATPase subunit protein-coding 217.667-16 chr16 85253814 85254405 + 0.666667 NA Intergenic MIR|SINE|MIR -28849 NR_038859 197196 Hs.679002 NM_153238 ENSG00000179219 LINC00311 NCRNA00311|TMEM148 long intergenic non-protein coding RNA 311 ncRNA 175.333-21 chr17 33187120 33187583 + 0.666667 NA intron (NM_001094, intron 1 of 9) HSMAR1|DNA|TcMar-Mariner 105637 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 238-19 chr3 193675263 193675854 + 0.666667 NA intron (NM_130831, intron 26 of 27) intron (NM_130831, intron 26 of 27) -48226 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 113.333-4 chr1 53385138 53385352 + 0.666667 NA Intergenic MIRb|SINE|MIR 54775 NR_002314 163742 Hs.99394 NR_002314 ENSG00000236253 SLC25A3P1 - solute carrier family 25 member 3 pseudogene 1 pseudo 176.833-24 chr3 186256423 186256848 + 0.666667 NA intron (NM_001346, intron 17 of 24) L2a|LINE|L2 105599 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 121.667-92 chr8 9997740 9998076 + 0.666667 NA Intergenic Intergenic -56384 NM_001135670 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 184.167-25 chr16 50217109 50217564 + 0.666667 NA intron (NM_001365324, intron 4 of 11) intron (NM_001365324, intron 4 of 11) -49215 NM_001286057 113 Hs.513578 NM_001114 ENSG00000121281 ADCY7 AC7 adenylate cyclase 7 protein-coding 120-50 chr2 33196477 33196800 + 0.666667 NA intron (NM_206943, intron 7 of 33) intron (NM_206943, intron 7 of 33) 62041 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 125.833-79 chr6 170576003 170576231 + 0.666667 NA 3' UTR (NM_002598, exon 6 of 6) 3' UTR (NM_002598, exon 6 of 6) 8520 NM_144781 5134 Hs.367900 NM_002598 ENSG00000071994 PDCD2 RP8|ZMYND7 programmed cell death 2 protein-coding 158.167-38 chr4 78517606 78517884 + 0.666667 NA intron (NM_025074, intron 66 of 73) intron (NM_025074, intron 66 of 73) -34025 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 233.667-3 chr10 63701364 63701807 + 0.666667 NA Intergenic AluSx1|SINE|Alu -179695 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 142.333-77 chr4 35161889 35162220 + 0.666667 NA Intergenic Intergenic -892307 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 158.333-43 chr2 122824090 122824328 + 0.666667 NA Intergenic Intergenic 249272 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 211.167-16 chr2 176782510 176783142 + 0.666667 NA Intergenic MSTB1|LTR|ERVL-MaLR 145072 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 260.333-22 chrX 79614807 79615402 + 0.666667 NA Intergenic Intergenic -247552 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 135.333-23 chr15 23485058 23485373 + 0.666667 NA Intergenic L1M5|LINE|L1 -37972 NM_001304388 283685 NM_182561 ENSG00000174450 GOLGA6L2 CT105 golgin A6 family like 2 protein-coding 146-19 chr14 43792961 43793429 + 0.666667 NA Intergenic Intergenic 714088 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 160-20 chr12 16274994 16275477 + 0.666667 NA intron (NM_001170798, intron 1 of 8) L2c|LINE|L2 2450 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 254.5-9 chr4 75252195 75253026 + 0.666667 NA Intergenic Intergenic -101466 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 114.834-4 chr17 58579295 58579843 + 0.666667 NA intron (NM_031272, intron 20 of 31) MIR3|SINE|MIR -35241 NM_001368772 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 145.333-71 chr6 35776146 35776407 + 0.666667 NA promoter-TSS (NM_207409) promoter-TSS (NM_207409) -318 NR_104469 389383 Hs.259563 NM_207409 ENSG00000196748 CLPSL2 AAAL3045|C6orf126|UNQ3045|dJ510O8.5 colipase like 2 protein-coding 130.334 chr12 44269276 44269814 + 0.666667 NA intron (NM_001286213, intron 4 of 6) intron (NM_001286213, intron 4 of 6) 433464 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 132-41 chr2 52463884 52464211 + 0.666667 NA Intergenic Intergenic 93399 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 241.667-28 chr4 106343676 106344266 + 0.666667 NA intron (NM_001142416, intron 6 of 6) L2|LINE|L2 23464 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 195.5-20 chr17 10527088 10527876 + 0.666667 NA intron (NM_001100112, intron 28 of 39) intron (NM_001100112, intron 28 of 39) -8940 NM_005963 4619 Hs.689619 NM_005963 ENSG00000109061 MYH1 HEL71|MYHSA1|MYHa|MyHC-2X/D|MyHC-2x myosin heavy chain 1 protein-coding 178.167-49 chr8 77486442 77486797 + 0.666667 NA Intergenic L1PB1|LINE|L1 35922 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 272.667-12 chr3 170581432 170582095 + 0.666667 NA intron (NM_020949, intron 1 of 7) MIRc|SINE|MIR 4312 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 120-112 chr8 136119958 136120248 + 0.666667 NA Intergenic Intergenic -410695 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 168.833-17 chr13 94034452 94034924 + 0.666667 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) 153303 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 132.333-107 chr8 112251699 112251943 + 0.666667 NA intron (NM_001363185, intron 59 of 66) intron (NM_001363185, intron 59 of 66) -391672 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 126.667-92 chr7 108197758 108197994 + 0.666667 NA intron (NM_001371137, intron 11 of 25) L2c|LINE|L2 45509 NM_001371181 131.333-11 chr10 96841565 96841922 + 0.666667 NA intron (NM_001170766, intron 2 of 8) intron (NM_001170766, intron 2 of 8) 8798 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 226.5-29 chr6 14782313 14783015 + 0.666667 NA Intergenic AluY|SINE|Alu -463405 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 176.167-17 chr18 45720164 45720598 + 0.666667 NA Intergenic MER91B|DNA|hAT-Tip100 -3800 NM_001308278 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 178-71 chr9 75358473 75358787 + 0.666667 NA Intergenic Intergenic 270116 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 126.667-69 chr4 107595417 107595900 + 0.666667 NA Intergenic Charlie7|DNA|hAT-Charlie 124576 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 148.5-60 chr5 174770286 174770751 + 0.666667 NA Intergenic MIRb|SINE|MIR 18784 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 205.667-43 chr4 54393459 54393942 + 0.666667 NA Intergenic Intergenic 60808 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 129.333-45 chr2 72014838 72015333 + 0.666667 NA Intergenic MIR|SINE|MIR 132777 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 123.167-7 chr1 232658346 232658736 + 0.666667 NA Intergenic MIRb|SINE|MIR -59530 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 150-82 chr8 36168000 36168326 + 0.666667 NA Intergenic Intergenic -457843 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 152.167-26 chr2 40414049 40414529 + 0.666667 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 16015 NM_021097 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 217.667-6 chr11 28863822 28864437 + 0.666667 NA Intergenic Intergenic -386581 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 135.5-34 chr14 82316044 82316422 + 0.666667 NA Intergenic Intergenic -326399 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 173.333-59 chr6 48496645 48497108 + 0.666667 NA Intergenic Intergenic -428187 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 221.666-4 chr6 136564010 136564672 + 0.666667 NA intron (NM_005923, intron 26 of 29) intron (NM_005923, intron 26 of 29) -13522 NM_001198617 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 155.5-42 chr4 102281890 102282228 + 0.666667 NA intron (NM_022154, intron 5 of 7) MIR|SINE|MIR 42253 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 137-82 chr6 24423582 24423878 + 0.666667 NA TTS (NM_001286265) TTS (NM_001286265) 20794 NM_020662 57380 Hs.658612 NM_020662 ENSG00000124532 MRS2 HPT|MRS2L magnesium transporter MRS2 protein-coding 181 chr1 43855653 43856105 + 0.666667 NA intron (NM_001270466, intron 4 of 4) Ricksha_0|DNA|MULE-MuDR 17257 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 205.167-18 chr17 61656745 61657125 + 0.666667 NA Intergenic AluJr|SINE|Alu -65716 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 199.667-46 chr4 134889138 134889630 + 0.666667 NA Intergenic Intergenic 234175 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 129-65 chr4 71720407 71720623 + 0.666667 NA Intergenic AluSx1|SINE|Alu 63564 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 168.667-20 chr14 91112598 91112871 + 0.666667 NA intron (NM_001358312, intron 1 of 13) A-rich|Low_complexity|Low_complexity -1279 NM_001286470 80017 Hs.309849 NM_024952 ENSG00000133943 DGLUCY C14orf159 D-glutamate cyclase protein-coding 238.833-12 chr5 169888641 169889238 + 0.666667 NA intron (NM_001346304, intron 1 of 3) intron (NM_001346304, intron 1 of 3) 91556 NM_001129891 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 202.334-6 chr21 24937636 24938162 + 0.666667 NA intron (NR_046198, intron 2 of 3) MLT2B1|LTR|ERVL 97349 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 136-58 chr4 114380375 114380665 + 0.666667 NA Intergenic Intergenic -217882 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 223.667-29 chr8 33378780 33379580 + 0.666667 NA intron (NM_032664, intron 4 of 4) THE1D|LTR|ERVL-MaLR 93966 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 206.833 chr13 51028488 51029126 + 0.666667 NA intron (NR_003923, intron 5 of 16) AluY|SINE|Alu 37350 NR_003923 2974 Hs.411573 NM_004129 ENSG00000123201 GUCY1B2 GC-SB2 guanylate cyclase 1 soluble subunit beta 2 (pseudogene) pseudo 185.5-2 chr1 45539141 45539502 + 0.666667 NA Intergenic Intergenic -11462 NM_001202413 10327 Hs.474584 NM_006066 ENSG00000117448 AKR1A1 ALDR1|ALR|ARM|DD3|HEL-S-6 aldo-keto reductase family 1 member A1 protein-coding 179.167-49 chr9 90930918 90931242 + 0.666667 NA Intergenic Intergenic 103660 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 215.5-14 chr16 8306895 8307295 + 0.666667 NA Intergenic L1ME3G|LINE|L1 282743 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 129.333-55 chr20 52970952 52971334 + 0.666667 NA Intergenic L2b|LINE|L2 -1215 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 306.334 chr13 49781401 49782137 + 0.666667 NA intron (NM_002267, intron 1 of 16) MER81|DNA|hAT-Blackjack 10913 NM_002267 3839 Hs.527919 NM_002267 ENSG00000102753 KPNA3 IPOA4|SRP1|SRP1gamma|SRP4|hSRP1 karyopherin subunit alpha 3 protein-coding 256.167 chr1 174277201 174277648 + 0.666667 NA intron (NM_001366445, intron 9 of 13) Charlie21a|DNA|hAT-Charlie 2324 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 132.5-20 chr12 103518717 103519076 + 0.666667 NA Intergenic Intergenic 22856 NR_135004 105369945 Hs.742785 NR_135004 LOC105369945 - uncharacterized LOC105369945 ncRNA 170.667-44 chr4 30604894 30605176 + 0.666667 NA Intergenic Intergenic -115334 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 203.167-11 chr11 104736467 104736851 + 0.666667 NA Intergenic Intergenic -127357 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 114.167-13 chr11 24929432 24929866 + 0.666667 NA intron (NM_001009909, intron 7 of 11) L1PB1|LINE|L1 432596 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 193.333-25 chr18 31592065 31592448 + 0.666667 NA intron (NM_000371, intron 1 of 3) intron (NM_000371, intron 1 of 3) 489 NM_000371 7276 Hs.427202 NM_000371 ENSG00000118271 TTR ATTR|CTS|CTS1|HEL111|HsT2651|PALB|TBPA transthyretin protein-coding 134.333-83 chr4 45956766 45957103 + 0.666667 NA Intergenic MLT1J1|LTR|ERVL-MaLR 167120 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 177.833-48 chr8 85214693 85215065 + 0.666667 NA TTS (NM_001951) TTS (NM_001951) 5495 NM_001099673 401466 Hs.443072 NM_001099670 ENSG00000176731 RBIS C8orf59 ribosomal biogenesis factor protein-coding 146.833-37 chr22 36602128 36602391 + 0.666667 NA intron (NM_006078, intron 1 of 3) L1MA9|LINE|L1 -73093 NM_003753 8664 Hs.55682 NM_003753 ENSG00000100353 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3 subunit D protein-coding 120.167-5 chr1 218627136 218627400 + 0.666667 NA intron (NR_031644, intron 3 of 6) L1MC5|LINE|L1 117173 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 144.333-89 chr8 88850485 88850882 + 0.666667 NA Intergenic L1ME2|LINE|L1 -523200 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 152.333-58 chr6 136547543 136547978 + 0.666667 NA intron (NM_001198617, intron 1 of 15) intron (NM_001198617, intron 1 of 15) 3059 NM_001198616 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 171.667-91 chrX 86488995 86489435 + 0.666667 NA intron (NM_001139515, intron 2 of 11) intron (NM_001139515, intron 2 of 11) 226247 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 124.667-34 chr14 64406723 64407069 + 0.666667 NA intron (NM_005956, intron 2 of 27) MIRb|SINE|MIR 18543 NM_001364837 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 191-36 chr20 52533635 52534012 + 0.666667 NA Intergenic MLT1L|LTR|ERVL-MaLR -87015 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 140-65 chr5 11207944 11208440 + 0.666667 NA intron (NM_001288715, intron 9 of 20) L1M5|LINE|L1 380725 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 180.334 chr11 106358104 106358628 + 0.666667 NA Intergenic Intergenic 106959 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 185-11 chr12 45854886 45855223 + 0.666667 NA intron (NM_152641, intron 15 of 20) intron (NM_152641, intron 15 of 20) 125345 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 116.5-78 chr6 133831234 133831467 + 0.666667 NA intron (NR_027030, intron 1 of 2) intron (NR_027030, intron 1 of 2) 10203 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 144.833-33 chr2 67645552 67645808 + 0.666667 NA Intergenic Intergenic 179882 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 156.833-19 chr14 73392952 73393482 + 0.666667 NA intron (NM_001005743, intron 2 of 12) MIRb|SINE|MIR 65363 NM_001005745 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 121-94 chr8 129339681 129339938 + 0.666667 NA Intergenic MIRb|SINE|MIR -98569 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 129.833-77 chrX 29327564 29328057 + 0.666667 NA intron (NM_014271, intron 3 of 10) MER58A|DNA|hAT-Charlie -246468 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 127-102 chr9 137711692 137712078 + 0.666667 NA intron (NM_001354263, intron 2 of 26) intron (NM_001354263, intron 2 of 26) 76521 NR_147508 651337 Hs.603195 NR_147508 ENSG00000255585 LOC651337 - uncharacterized LOC651337 ncRNA 125.667-15 chr10 83408266 83408611 + 0.666667 NA Intergenic AluJr4|SINE|Alu 268651 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 129.667-49 chr2 99379230 99379519 + 0.666667 NA exon (NM_015904, exon 12 of 24) exon (NM_015904, exon 12 of 24) 41985 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 197.667-28 chr2 49069548 49069929 + 0.666667 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 10135 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 155-49 chr3 34921571 34921992 + 0.666667 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 472242 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 150.5-57 chr4 114818086 114818468 + 0.666667 NA Intergenic Intergenic 161518 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 196-23 chr14 43378096 43378593 + 0.666667 NA Intergenic Intergenic 1128939 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 175.5-24 chr2 132920203 132920675 + 0.666667 NA intron (NR_135572, intron 1 of 1) intron (NR_135572, intron 1 of 1) 4882 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 221-31 chr7 68247380 68247974 + 0.666667 NA Intergenic Intergenic 227424 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 124-65 chr3 114768442 114768759 + 0.666667 NA intron (NM_001164343, intron 4 of 11) intron (NM_001164343, intron 4 of 11) -9493 NM_001164345 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 162.167-38 chr5 9878466 9878918 + 0.666667 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) 24315 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 153.333-64 chr5 44037107 44037361 + 0.666667 NA Intergenic L1PA11|LINE|L1 -351498 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 190-36 chr20 52667872 52668279 + 0.666667 NA Intergenic AluSz|SINE|Alu 47237 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 239.667-13 chr17 39374127 39374597 + 0.666667 NA intron (NM_001370209, intron 1 of 13) AluSx1|SINE|Alu 27264 NM_032875 84961 Hs.462946 NM_032875 ENSG00000108306 FBXL20 Fbl2|Fbl20 F-box and leucine rich repeat protein 20 protein-coding 170.5-45 chr3 57465905 57466378 + 0.666667 NA intron (NM_001366028, intron 17 of 73) L1ME4b|LINE|L1 78203 NM_198564 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein axonemal heavy chain 12 protein-coding 142-14 chr10 34583207 34583547 + 0.666667 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 231919 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 185.334-3 chr17 60816753 60817421 + 0.666667 NA intron (NM_001330413, intron 7 of 25) intron (NM_001330413, intron 7 of 25) 139236 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 163-21 chr16 35587935 35588233 + 0.666667 NA Intergenic Intergenic -80914 NR_034018 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 139-54 chr5 125197656 125197972 + 0.666667 NA intron (NR_109882, intron 4 of 5) MER53|DNA|hAT 160983 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 163.333-17 chr12 81318884 81319255 + 0.666667 NA intron (NM_001220474, intron 20 of 30) L3|LINE|CR1 39880 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 191.834-4 chr18 12753015 12753565 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR -3868 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 121.333-74 chr4 64680493 64680756 + 0.666667 NA Intergenic AluSz|SINE|Alu -271164 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 155-35 chr2 103334830 103335067 + 0.666667 NA Intergenic LTR9B|LTR|ERV1 -350519 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 145.833-79 chr8 121733783 121734307 + 0.666667 NA Intergenic AluYc3|SINE|Alu -92605 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 154-44 chr2 185130653 185131019 + 0.666667 NA Intergenic Intergenic 36236 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 119.833-47 chr2 213352523 213352833 + 0.666667 NA intron (NR_047660, intron 6 of 14) intron (NR_047660, intron 6 of 14) 68214 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 262-23 chr5 112249933 112250517 + 0.666667 NA intron (NR_110559, intron 2 of 3) intron (NR_110559, intron 2 of 3) 21942 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 170.333-44 chr20 55799229 55799592 + 0.666667 NA Intergenic MER2|DNA|TcMar-Tigger 206109 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 165.333-54 chr6 80549220 80549700 + 0.666667 NA Intergenic Intergenic 442789 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 129.333-36 chr15 68667772 68668105 + 0.666667 NA intron (NM_006091, intron 2 of 11) MIRb|SINE|MIR 26435 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 124.167-8 chr10 63890987 63891356 + 0.666667 NA Intergenic Intergenic -369281 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 212.5-25 chr5 99745460 99745999 + 0.666667 NA Intergenic MSTC|LTR|ERVL-MaLR 211739 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 193.5-52 chr7 24836114 24836433 + 0.666667 NA intron (NR_104111, intron 13 of 21) L1ME4c|LINE|L1 56348 NM_145322 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 149-55 chr3 81772717 81773123 + 0.666667 NA Intergenic L1MC3|LINE|L1 -11275 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 159.667-99 chr9 38276266 38276627 + 0.666667 NA Intergenic Intergenic -116256 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 123.5-18 chr12 23962363 23962627 + 0.666667 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -11463 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 210.667-34 chr3 107527630 107528138 + 0.666667 NA intron (NM_001276286, intron 2 of 16) intron (NM_001276286, intron 2 of 16) 4922 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 124.333-105 chr8 135658352 135658766 + 0.666667 NA Intergenic L2a|LINE|L2 201103 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 153.667-6 chr1 101885324 101885703 + 0.666667 NA intron (NR_033424, intron 1 of 1) Tigger2|DNA|TcMar-Tigger 13501 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 125.667-108 chr6 130588499 130588741 + 0.666667 NA Intergenic Intergenic 151503 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 176.167-5 chr10 50542751 50543075 + 0.666667 NA intron (NM_147156, intron 2 of 10) intron (NM_147156, intron 2 of 10) 81043 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 150.667-81 chr6 45866130 45866484 + 0.666667 NA Intergenic (CTTT)n|Simple_repeat|Simple_repeat 71290 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 186-62 chrX 66546013 66546536 + 0.666667 NA Intergenic L1M5|LINE|L1 69756 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 118.333-46 chr17 61031344 61031528 + 0.666667 NA intron (NM_001330413, intron 17 of 25) intron (NM_001330413, intron 17 of 25) 336268 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 134.833-62 chr8 32496632 32497077 + 0.666667 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -51356 NM_001160005 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 188.667-65 chr8 81707010 81707550 + 0.666667 NA intron (NR_033194, intron 5 of 6) LTR86B1|LTR|ERVL -12222 NM_001010893 347051 Hs.683849 NM_001010893 ENSG00000253598 SLC10A5 P5 solute carrier family 10 member 5 protein-coding 198.167-18 chr2 222167887 222168420 + 0.666667 NA Intergenic L1ME3B|LINE|L1 -129994 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 179.5-17 chr2 8241791 8242311 + 0.666667 NA intron (NR_152741, intron 9 of 9) intron (NR_152741, intron 9 of 9) 86368 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 113.333-33 chr13 23031677 23031993 + 0.666667 NA Intergenic MLT1C|LTR|ERVL-MaLR -115466 NR_138043 100996930 Hs.380803 NR_138043 LINC00621 - long intergenic non-protein coding RNA 621 ncRNA 204.667-42 chr7 27022952 27023462 + 0.666667 NA Intergenic Intergenic 72793 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 216-4 chr10 75089647 75090115 + 0.666667 NA Intergenic MLT1J2|LTR|ERVL-MaLR 9605 NM_001363514 51207 Hs.178170 NM_016364 ENSG00000079393 DUSP13 BEDP|DUSP13A|DUSP13B|MDSP|SKRP4|TMDP dual specificity phosphatase 13 protein-coding 141.5-12 chr11 39346558 39346776 + 0.666667 NA Intergenic Intergenic 697809 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 130.667-21 chr13 71583588 71583942 + 0.666667 NA intron (NM_001366712, intron 3 of 11) AluJb|SINE|Alu 283427 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 142.333-16 chr10 118707268 118707638 + 0.666667 NA intron (NM_153810, intron 4 of 8) intron (NM_153810, intron 4 of 8) 47517 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 115.333-112 chr9 109958557 109958981 + 0.666667 NA intron (NM_147150, intron 6 of 9) intron (NM_147150, intron 6 of 9) -89829 NM_001004065 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 115.167-59 chr2 104126163 104126535 + 0.666667 NA Intergenic Intergenic 281983 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 247.167-9 chr2 39093206 39093729 + 0.666667 NA intron (NM_005633, intron 1 of 22) intron (NM_005633, intron 1 of 22) 26996 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 167.833-20 chr15 87410274 87410570 + 0.666667 NA Intergenic Intergenic -166507 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 118.333-25 chr12 61173665 61173950 + 0.666667 NA Intergenic Intergenic 1019032 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 117-115 chr7 114127430 114127704 + 0.666667 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 41240 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 125.667-60 chr2 89839789 89840045 + 0.666667 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -202010 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 181.667 chr1 23500032 23500474 + 0.666667 NA Intergenic Intergenic -16074 NM_017707 55616 Hs.437379 NM_017707 ENSG00000088280 ASAP3 ACAP4|CENTB6|DDEFL1|UPLC1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 protein-coding 135-48 chr2 217224800 217225019 + 0.666667 NA Intergenic X9_LINE|LINE|L1 -57824 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 225-26 chr4 122401456 122402181 + 0.666667 NA intron (NM_001159285, intron 6 of 11) L1MA5A|LINE|L1 22300 NM_001159285 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 140.167-17 chr14 48806605 48806888 + 0.666667 NA Intergenic Intergenic 779634 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 195.5-6 chr10 89052735 89053276 + 0.666667 NA Intergenic Intergenic -10331 NR_039826 100616128 NR_039826 ENSG00000283664 MIR4679-1 - microRNA 4679-1 ncRNA 168-37 chr3 39760263 39760566 + 0.666667 NA Intergenic L1ME2|LINE|L1 -48500 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 188.667-5 chr10 34182240 34182582 + 0.666667 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -409731 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 248.167-18 chr4 144259701 144260214 + 0.666667 NA Intergenic L1MA4|LINE|L1 -119239 NM_002099 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 177.167-27 chr3 116433919 116434270 + 0.666667 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) 11393 NM_001318915 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 171.667-61 chr4 131543746 131544003 + 0.666667 NA Intergenic Intergenic -220964 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 122.667-103 chr9 109714668 109715032 + 0.666667 NA intron (NM_001037293, intron 1 of 6) LTR16|LTR|ERVL -65348 NM_007203 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 215.333-11 chr13 101494452 101495009 + 0.666667 NA intron (NM_001271756, intron 1 of 9) L1ME4c|LINE|L1 4778 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 268.667-6 chr2 51041515 51042014 + 0.666667 NA intron (NR_135237, intron 1 of 10) L1ME3|LINE|L1 9163 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 168.667-43 chr2 195279357 195279637 + 0.666667 NA Intergenic Intergenic -377461 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 119.333-8 chr1 200415952 200416225 + 0.666667 NA Intergenic Intergenic -6052 NM_012482 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 145-11 chr10 84934685 84935048 + 0.666667 NA Intergenic L2|LINE|L2 264039 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 175.167-44 chr6 166096132 166096435 + 0.666667 NA Intergenic L1PA13|LINE|L1 -1437 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 199.333-43 chr8 136293442 136293934 + 0.666667 NA Intergenic Intergenic -237110 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 144.5-91 chr8 126446700 126447044 + 0.666667 NA Intergenic Intergenic 111606 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 143.333-65 chr5 2878141 2878369 + 0.666667 NA Intergenic Intergenic -39599 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 158.333-20 chr12 24817959 24818298 + 0.666667 NA intron (NM_001178091, intron 9 of 9) intron (NM_001178091, intron 9 of 9) 84094 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 173.667-63 chr8 10824783 10825366 + 0.666667 NA TTS (NR_031711) TTS (NR_031711) 369 NR_031711 100302166 NR_031711 ENSG00000283210 MIR1322 MIRN1322|hsa-mir-1322 microRNA 1322 ncRNA 293.5-12 chr7 44869148 44869788 + 0.666667 NA Intergenic AluSg|SINE|Alu 12332 NR_039801 100616393 NR_039801 ENSG00000284261 MIR4657 mir-4657 microRNA 4657 ncRNA 138.5-72 chr7 47203343 47203834 + 0.666667 NA Intergenic Intergenic 261215 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 115.667-75 chr3 112127458 112127711 + 0.666667 NA intron (NM_001190260, intron 2 of 4).2 MER94|DNA|hAT-Blackjack 5664 NM_152785 257144 Hs.49614 NM_152785 ENSG00000174500 GCSAM GCAT2|GCET2|HGAL germinal center associated signaling and motility protein-coding 124-88 chr7 47871300 47871502 + 0.666667 NA intron (NM_138295, intron 24 of 56) MLT1A1|LTR|ERVL-MaLR 76110 NR_161269 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 134.167-72 chr6 164803551 164803983 + 0.666667 NA intron (NR_131926, intron 3 of 3) L1M4a1|LINE|L1 18296 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 134.333-21 chr11 81589184 81589443 + 0.666667 NA Intergenic Intergenic 301523 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 119.5-79 chr5 74801142 74801697 + 0.666667 NA intron (NM_015566, intron 9 of 12) MIRc|SINE|MIR -34048 NM_170681 84340 Hs.277154 NM_032380 ENSG00000164347 GFM2 EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 G elongation factor mitochondrial 2 protein-coding 168.666 chr13 66455064 66455567 + 0.666667 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 237065 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 196.333-54 chr8 104117911 104118243 + 0.666667 NA intron (NM_001348498, intron 19 of 24) intron (NM_001348498, intron 19 of 24) -105258 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 182.5-14 chr14 74160989 74161463 + 0.666667 NA intron (NM_001024674, intron 5 of 5) AluSx|SINE|Alu 76273 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 169.333-58 chr5 65280981 65281412 + 0.666667 NA intron (NM_197941, intron 11 of 24) intron (NM_197941, intron 11 of 24) 200724 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 129.667-10 chr10 128917548 128917938 + 0.666667 NA Intergenic Intergenic 4910 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 180.5-26 chr2 32335488 32335990 + 0.666667 NA Intergenic Intergenic -21289 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 219-5 chr11 123727156 123727557 + 0.666667 NA intron (NM_001301780, intron 6 of 6) intron (NM_001301780, intron 6 of 6) 3629 NM_001301819 7753 Hs.112556 NM_003455 ENSG00000166261 ZNF202 ZKSCAN10|ZSCAN42 zinc finger protein 202 protein-coding 121.167-90 chr8 138100506 138100776 + 0.666667 NA Intergenic Intergenic -17096 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 275-2 chr10 89187654 89188118 + 0.666667 NA Intergenic Intergenic 19431 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 118.167-58 chr6 158156186 158156395 + 0.666667 NA intron (NM_032861, intron 2 of 16) intron (NM_032861, intron 2 of 16) 11972 NM_032861 84947 Hs.154706 NM_032861 ENSG00000122335 SERAC1 - serine active site containing 1 protein-coding 230.833-13 chr20 53902620 53903217 + 0.666667 NA Intergenic AluYf1|SINE|Alu -27209 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 131-64 chr7 41305132 41305428 + 0.666667 NA Intergenic L1MEf|LINE|L1 203676 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 137.333-40 chr17_KI270729v1_random 22926 23293 + 0.666667 NA NA (GAATG)n|Satellite|Satellite NA NA 116.167-16 chr10 89903225 89903426 + 0.666667 NA intron (NR_149079, intron 1 of 1) L3|LINE|CR1 15191 NR_149079 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 135.333-34 chr18 38914364 38914835 + 0.666667 NA Intergenic Intergenic 707576 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 244.333-13 chr2 175978439 175979043 + 0.666667 NA intron (NR_130941, intron 6 of 14) L2|LINE|L2 23526 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 166.667-25 chr2 164154633 164155131 + 0.666667 NA Intergenic Intergenic 413613 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 204.333-46 chr6 45245900 45246307 + 0.666667 NA intron (NM_001350325, intron 2 of 10) L1MB4|LINE|L1 -48333 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 142.333-27 chr12 73457493 73457910 + 0.666667 NA Intergenic MER67D|LTR|ERV1 298511 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 122-37 chr2 69589057 69589261 + 0.666667 NA intron (NM_014911, intron 2 of 21) intron (NM_014911, intron 2 of 21) 54580 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 230.5-6 chr18 12649065 12649763 + 0.666667 NA intron (NM_020148, intron 1 of 15) AluJr|SINE|Alu 7318 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 229-22 chr2 127114051 127114493 + 0.666667 NA Intergenic AluSx1|SINE|Alu -7118 NM_139345 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 197.167-43 chr5 73065053 73065397 + 0.666667 NA intron (NM_001146032, intron 17 of 24) intron (NM_001146032, intron 17 of 24) -55350 NM_173490 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 129-71 chr5 62695114 62695373 + 0.666667 NA Intergenic Intergenic 116424 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 145.333-44 chr21 28438279 28438671 + 0.666667 NA Intergenic Intergenic -100843 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 116.833-23 chr18 73601543 73601837 + 0.666667 NA Intergenic Intergenic 276749 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 161.667-62 chr4 151359118 151359502 + 0.666667 NA Intergenic A-rich|Low_complexity|Low_complexity -49866 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 126.667-98 chr8 90772118 90772379 + 0.666667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -19527 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 251.333-20 chr6 146732639 146733108 + 0.666667 NA intron (NM_024694, intron 20 of 35) intron (NM_024694, intron 20 of 35) 70951 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 278.833-4 chr2 79289580 79290225 + 0.666667 NA Intergenic MIR|SINE|MIR -130149 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 182.167-22 chr2 109573708 109574132 + 0.666667 NA intron (NM_001321506, intron 1 of 6) intron (NM_001321506, intron 1 of 6) 39747 NM_001321513 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 161.333-6 chr10 61593621 61594069 + 0.666667 NA Intergenic Intergenic -69084 NM_001366905 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 140.333-95 chrX 152126515 152126938 + 0.666667 NA intron (NM_001204811, intron 2 of 3) intron (NM_001204811, intron 2 of 3) -8787 NM_021049 4104 Hs.18048 NM_021049 MAGEA5 CT1.5|MAGE5|MAGEA4 MAGE family member A5 protein-coding 178.667-33 chr2 193396156 193396456 + 0.666667 NA Intergenic Intergenic 646461 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 246.667-29 chrX 96636189 96636738 + 0.666667 NA Intergenic Intergenic -48200 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 118.667-8 chr1 114277036 114277305 + 0.666667 NA Intergenic L1MC1|LINE|L1 -123301 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 128-80 chr6 86818911 86819245 + 0.666667 NA Intergenic Intergenic -118450 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 163-9 chr10 63097115 63097500 + 0.666667 NA Intergenic Arthur1|DNA|hAT-Tip100 -35940 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 157.333-24 chr15 48871970 48872270 + 0.666667 NA exon (NM_203349, exon 5 of 12) exon (NM_203349, exon 5 of 12) -6014 NM_014335 23741 Hs.255973 NM_014335 ENSG00000255302 EID1 C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21 EP300 interacting inhibitor of differentiation 1 protein-coding 129.333-20 chr11 105477361 105477704 + 0.666667 NA Intergenic LTR81B|LTR|Gypsy -132541 NM_001077244 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 163.667-11 chr10 93630714 93631169 + 0.666667 NA intron (NM_006204, intron 8 of 21) intron (NM_006204, intron 8 of 21) 18404 NM_006204 5146 Hs.658121 NM_006204 ENSG00000095464 PDE6C ACHM5|COD4|PDEA2 phosphodiesterase 6C protein-coding 123.667-4 chr1 57577266 57577555 + 0.666667 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -152489 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 129-21 chr11 43818079 43818326 + 0.666667 NA intron (NM_016142, intron 6 of 10) intron (NM_016142, intron 6 of 10) -62629 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 134-46 chr15 101695992 101696528 + 0.666667 NA intron (NM_152334, intron 10 of 18) L1ME1|LINE|L1 28213 NM_152334 123283 Hs.657163 NM_152334 ENSG00000185418 TARSL2 - threonyl-tRNA synthetase like 2 protein-coding 160.833-24 chr2 11867554 11867834 + 0.666667 NA Intergenic Intergenic -30708 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 117-26 chr14 28142823 28143106 + 0.666667 NA Intergenic Intergenic -469743 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 226.666 chr12 10293998 10294675 + 0.666667 NA intron (NM_001351060, intron 2 of 8) intron (NM_001351060, intron 2 of 8) -10110 NM_001114396 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 152.167-60 chr5 100997726 100998052 + 0.666667 NA Intergenic Intergenic -94607 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 201-35 chr5 41009090 41009499 + 0.666667 NA exon (NM_173489, exon 32 of 42) exon (NM_173489, exon 32 of 42) 62048 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 119.333-104 chr8 8726634 8726929 + 0.666667 NA Intergenic L1MA4|LINE|L1 24844 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 139.167-9 chr11 32204740 32205015 + 0.666667 NA Intergenic MLT2D|LTR|ERVL -60965 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 143-21 chr13 26570667 26571072 + 0.666667 NA intron (NM_006646, intron 1 of 9) L1MC4a|LINE|L1 13166 NM_001291965 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 136-7 chr10 21293344 21293613 + 0.666667 NA Intergenic Intergenic 79472 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 161.167-25 chr17 58829757 58830063 + 0.666667 NA intron (NM_014906, intron 1 of 6) AluJo|SINE|Alu 74041 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 151-71 chr7 111429591 111429992 + 0.666667 NA intron (NM_001350961, intron 4 of 7) intron (NM_001350961, intron 4 of 7) 132500 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 153.833-11 chr10 93989573 93990078 + 0.666667 NA Intergenic AluJr4|SINE|Alu -4106 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 133.667-55 chr2 198820562 198820923 + 0.666667 NA Intergenic MER63A|DNA|hAT-Blackjack -445645 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 217.5-4 chr10 121286899 121287598 + 0.666667 NA Intergenic LTR45B|LTR|ERV1 244066 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 116.167-73 chr7 89385211 89385556 + 0.666667 NA Intergenic L2a|LINE|L2 -589646 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 173.833-10 chr10 106698031 106698385 + 0.666667 NA intron (NM_001206569, intron 9 of 25) intron (NM_001206569, intron 9 of 25) 466498 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 164.667-34 chr18 9938523 9938918 + 0.666667 NA intron (NM_194434, intron 4 of 5) intron (NM_194434, intron 4 of 5) 24704 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 174.833-24 chr2 164157422 164157756 + 0.666667 NA Intergenic L1ME1|LINE|L1 410906 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 151.667-56 chr3 100151413 100151767 + 0.666667 NA intron (NM_001167924, intron 2 of 9) MLT1B|LTR|ERVL-MaLR -34234 NR_028358 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 190.167-41 chr7 18471565 18472162 + 0.666667 NA intron (NM_001204144, intron 3 of 12) intron (NM_001204144, intron 3 of 12) -23847 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 183-36 chr3 89603935 89604314 + 0.666667 NA Intergenic Intergenic 496503 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 278.5-14 chr7 18434013 18434576 + 0.666667 NA intron (NM_001321896, intron 1 of 12) L1PA15|LINE|L1 -61416 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 157.834-7 chr7 113914353 113914864 + 0.666667 NA intron (NM_002711, intron 1 of 3) MamTip2|DNA|hAT-Tip100 4401 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 143.5-36 chr2 4524129 4524351 + 0.666667 NA Intergenic L1MEc|LINE|L1 131982 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 149.333-100 chr8 139583394 139583796 + 0.666667 NA Intergenic Intergenic 119528 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 169.667-27 chr16 13348128 13348466 + 0.666667 NA Intergenic Tigger4a|DNA|TcMar-Tigger 446699 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 129.667-79 chr5 19397957 19398330 + 0.666667 NA Intergenic Intergenic 488129 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 153-50 chr7 38616415 38616679 + 0.666667 NA intron (NM_001635, intron 1 of 20) L1ME3|LINE|L1 14826 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 165.333-22 chr14 97777615 97777953 + 0.666667 NA Intergenic MER20|DNA|hAT-Charlie -14953 NR_146447 100132612 Hs.587781 NR_146447 ENSG00000258869 LINC02312 - long intergenic non-protein coding RNA 2312 ncRNA 142.5-27 chr15 79332664 79333026 + 0.666667 NA intron (NM_001330376, intron 2 of 2) L4_B_Mam|LINE|RTE-X 21733 NM_001301203 23423 Hs.71608 NM_007364 ENSG00000166557 TMED3 C15orf22|P24B|p24g4|p24gamma4|p26 transmembrane p24 trafficking protein 3 protein-coding 122.333-15 chr10 85834655 85835045 + 0.666667 NA intron (NM_017551, intron 8 of 15) L1MD2|LINE|L1 257119 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 220.333-22 chr3 182601020 182601461 + 0.666667 NA Intergenic Intergenic -94116 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 126.333-86 chr5 40959060 40959375 + 0.666667 NA intron (NM_000587, intron 11 of 17) MIRc|SINE|MIR 49720 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 181.5-31 chr2 163077598 163077985 + 0.666667 NA Intergenic Intergenic -239024 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 223.833 chr1 33639618 33640318 + 0.666667 NA intron (NM_052896, intron 29 of 69) MIRc|SINE|MIR 167323 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 131.667-49 chr18 5646605 5647076 + 0.666667 NA Intergenic Intergenic -17849 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 151.333-90 chr8 126992960 126993515 + 0.666667 NA Intergenic Intergenic -19917 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 210.5-7 chr11 107271956 107272271 + 0.666667 NA Intergenic Intergenic 185733 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 219.667-23 chr5 57919488 57920098 + 0.666667 NA Intergenic Intergenic -20631 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 139.833-19 chr12 65836890 65837205 + 0.666667 NA intron (NM_001300918, intron 2 of 4) MIR|SINE|MIR -10073 NR_026825 204010 Hs.558686 NR_026825 ENSG00000241749 RPSAP52 RPSA_17_1251 ribosomal protein SA pseudogene 52 pseudo 158.333-12 chr11 5585183 5585585 + 0.666667 NA Intergenic L1MC|LINE|L1 4507 NM_001005162 340980 Hs.553704 NM_001005162 ENSG00000187747 OR52B6 OR11-47 olfactory receptor family 52 subfamily B member 6 protein-coding 219.667-7 chr12 43706775 43707343 + 0.666667 NA Intergenic L1M1|LINE|L1 51731 NM_001098614 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 146.667-43 chr17 28541511 28541931 + 0.666667 NA Intergenic Tigger3a|DNA|TcMar-Tigger 10903 NM_001330166 9094 Hs.410455 NM_005148 ENSG00000109103 UNC119 HRG4|IMD13|POC7|POC7A unc-119 lipid binding chaperone protein-coding 137.5-32 chr14 73454861 73455469 + 0.666667 NA intron (NM_001005743, intron 1 of 12) intron (NM_001005743, intron 1 of 12) 3415 NM_001005745 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 154-13 chr11 35723968 35724253 + 0.666667 NA intron (NM_017583, intron 2 of 4) intron (NM_017583, intron 2 of 4) 61335 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 208.333-24 chr2 155091151 155091640 + 0.666667 NA Intergenic L1ME1|LINE|L1 392700 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 160.667-33 chr17 81139246 81139603 + 0.666667 NA intron (NM_001080395, intron 1 of 13) MER110A|LTR|ERV1 -6116 NR_031652 100302229 NR_031652 ENSG00000221025 MIR1250 MIRN1250|hsa-mir-1250|mir-1250 microRNA 1250 ncRNA 177.5-69 chr5 180035347 180035874 + 0.666667 NA intron (NM_001280801, intron 2 of 7) L1MB7|LINE|L1 -20213 NR_029885 442908 NR_029885 ENSG00000198995 MIR340 MIRN340|hsa-mir-340|mir-340 microRNA 340 ncRNA 131.333-53 chr2 138566443 138566779 + 0.666667 NA intron (NM_001001664, intron 10 of 10) MADE1|DNA|TcMar-Mariner 64841 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 152.167-10 chr10 93951275 93951724 + 0.666667 NA Intergenic Intergenic 10416 NR_002319 266971 Hs.149255 NR_002319 ENSG00000180764 PIPSL PIP5K1L1|PIP5K1P3|PSMD4P2|bA429H9.1 PIP5K1A and PSMD4 like (pseudogene) pseudo 157.834-5 chr3 69726344 69726867 + 0.666667 NA Intergenic HSMAR2|DNA|TcMar-Mariner -12859 NM_001354605 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 182.5-3 chr1 216483003 216483399 + 0.666667 NA Intergenic PRIMA41-int|LTR|ERV1 -59753 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 151.5-49 chr3 184139313 184139612 + 0.666667 NA intron (NM_003907, intron 5 of 15) AluSp|SINE|Alu 4104 NM_003907 8893 Hs.283551 NM_003907 ENSG00000145191 EIF2B5 CACH|CLE|EIF-2B|EIF2Bepsilon|LVWM eukaryotic translation initiation factor 2B subunit epsilon protein-coding 140.333-22 chr14 56247259 56247597 + 0.666667 NA intron (NM_021255, intron 2 of 5) L1M5|LINE|L1 129017 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 136.833-48 chr4 69901584 69901933 + 0.666667 NA Intergenic Intergenic -29310 NM_001890 1446 Hs.3155 NM_001890 ENSG00000126545 CSN1S1 CASA|CSN1 casein alpha s1 protein-coding 152.333-72 chr9 74305591 74306083 + 0.666667 NA Intergenic Intergenic -65694 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 163.667-15 chr11 108813788 108814196 + 0.666667 NA intron (NM_004398, intron 13 of 17) intron (NM_004398, intron 13 of 17) 148923 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 184-11 chr12 3622963 3623441 + 0.666667 NA intron (NM_001144958, intron 17 of 19) MIR3|SINE|MIR 129907 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 138.667-56 chr3 32483679 32484085 + 0.666667 NA 3' UTR (NM_017801, exon 4 of 4) 3' UTR (NM_017801, exon 4 of 4) 18970 NM_017801 54918 Hs.380627 NM_017801 ENSG00000091317 CMTM6 CKLFSF6|PRO2219 CKLF like MARVEL transmembrane domain containing 6 protein-coding 113.333-102 chr8 72831628 72831910 + 0.666667 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 99724 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 189.167-17 chr14 87305709 87306056 + 0.666667 NA Intergenic Intergenic 349412 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 136.833-81 chr8 133960006 133960301 + 0.666667 NA Intergenic Intergenic 73657 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 162.833-26 chr20 48829752 48830311 + 0.666667 NA Intergenic MER20|DNA|hAT-Charlie -2032 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 151.833-16 chr14 55338204 55338501 + 0.666667 NA intron (NM_152231, intron 1 of 1) intron (NM_152231, intron 1 of 1) 66198 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 128.833-5 chr1 85915244 85915499 + 0.666667 NA intron (NM_152890, intron 24 of 59) MLT2B1|LTR|ERVL -206938 NM_001170670 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 307.667-12 chr8 35589479 35590191 + 0.666667 NA intron (NM_001322818, intron 3 of 16) L1MB8|LINE|L1 45443 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 184-9 chr10 122057991 122058305 + 0.666667 NA intron (NM_206861, intron 3 of 19) MER72|LTR|ERV1 -54737 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 145.667-42 chr17 39819830 39820048 + 0.666667 NA intron (NM_001257409, intron 2 of 5) AluSx3|SINE|Alu -41714 NM_001284516 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 126-84 chr6 131155465 131155992 + 0.666667 NA intron (NM_016377, intron 2 of 7) L1MC5a|LINE|L1 20261 NM_016377 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 153.333-51 chr3 45654831 45655254 + 0.666667 NA intron (NM_014240, intron 2 of 7) AluSz|SINE|Alu 33840 NR_033947 644714 Hs.712889 NR_033947 LIMD1-AS1 - LIMD1 antisense RNA 1 ncRNA 226.333-28 chr4 115778705 115779303 + 0.666667 NA Intergenic Intergenic -520721 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 117.333-35 chr15 60006996 60007334 + 0.666667 NA 3' UTR (NM_012182, exon 2 of 2) 3' UTR (NM_012182, exon 2 of 2) 2854 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 174.333-8 chr11 26349083 26349366 + 0.666667 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) 17094 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 216.333-4 chr1 179573456 179573888 + 0.666667 NA intron (NM_001297575, intron 1 of 6) intron (NM_001297575, intron 1 of 6) 2276 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 186.667-20 chr14 46399440 46399909 + 0.666667 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -71685 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 128.667-38 chr14 53028938 53029313 + 0.666667 NA Intergenic Intergenic -78028 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 145.333-25 chr14 52058233 52058508 + 0.666667 NA intron (NM_007361, intron 3 of 21) intron (NM_007361, intron 3 of 21) 10689 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 201-7 chr10 4692475 4692927 + 0.666667 NA Intergenic Intergenic -14631 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 115-81 chr7 135821630 135821992 + 0.666667 NA Intergenic L2a|LINE|L2 -72998 NM_001369697 389558 Hs.55200 NM_205855 ENSG00000189320 FAM180A UNQ1940 family with sequence similarity 180 member A protein-coding 206.333-35 chr8 130831613 130832181 + 0.666667 NA intron (NM_001115, intron 12 of 17) MIR|SINE|MIR 209012 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 185.167-36 chr5 76976893 76977243 + 0.666667 NA Intergenic Intergenic 24023 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 129.333-34 chr15 39147432 39147755 + 0.666667 NA Intergenic L2c|LINE|L2 -103076 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 113.333-94 chr5 159033998 159034287 + 0.666667 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 63814 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 137-20 chr11 82830008 82830264 + 0.666667 NA intron (NM_199418, intron 9 of 9) MIRc|SINE|MIR 70294 NM_005040 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 166.333-22 chr14 64048960 64049383 + 0.666667 NA intron (NM_015180, intron 46 of 114) AluJr4|SINE|Alu 45954 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 128.667-83 chr4 61675017 61675338 + 0.666667 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 473005 NM_001371342 211-36 chr8 103437398 103437996 + 0.666667 NA intron (NM_015420, intron 8 of 10) intron (NM_015420, intron 8 of 10) 22311 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 113.167-13 chr11 28599312 28599543 + 0.666667 NA Intergenic MLT1C|LTR|ERVL-MaLR -121879 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 156.167-8 chr10 90562198 90562758 + 0.666667 NA Intergenic MER90a|LTR|ERV1 -21673 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 173.5-10 chr10 28717175 28717561 + 0.666667 NA Intergenic Intergenic -26282 NR_120652 101929218 Hs.224866 NR_120652 LINC01517 - long intergenic non-protein coding RNA 1517 ncRNA 172.167-26 chr2 199868595 199868910 + 0.666667 NA Intergenic Intergenic -17579 NM_001363886 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 113.667-132 chrX 95324835 95325006 + 0.666667 NA Intergenic MER50B|LTR|ERV1 -261694 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 171.333-46 chr3 161857982 161858402 + 0.666667 NA Intergenic AluJo|SINE|Alu 361384 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 216.333-44 chr6 121282509 121282924 + 0.666667 NA intron (NR_104452, intron 13 of 35) L2a|LINE|L2 51764 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 246.834-2 chr15 65758885 65759925 + 0.666667 NA intron (NM_005848, intron 2 of 31) AluSx4|SINE|Alu 32888 NM_005848 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 130.833-22 chr16 9457115 9457353 + 0.666667 NA Intergenic Intergenic -1729 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 139.667-43 chr18 10798146 10798546 + 0.666667 NA intron (NM_022068, intron 11 of 51) intron (NM_022068, intron 11 of 51) -38697 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 173.333-47 chr4 56009654 56009998 + 0.666667 NA exon (NM_025009, exon 19 of 26) exon (NM_025009, exon 19 of 26) 60881 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 151.667-6 chr10 12229750 12230176 + 0.666667 NA intron (NM_006023, intron 6 of 12) intron (NM_006023, intron 6 of 12) 33775 NM_006023 8872 Hs.412842 NM_006023 ENSG00000151465 CDC123 C10orf7|D123 cell division cycle 123 protein-coding 151.667-92 chr9 11194040 11194314 + 0.666667 NA Intergenic Intergenic 580971 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 166-45 chr4 76663822 76664287 + 0.666667 NA intron (NM_020859, intron 2 of 10) MER135|DNA|DNA 88503 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 172.667-52 chr3 112589863 112590157 + 0.666667 NA Intergenic L1M3|LINE|L1 11959 NR_109779 100506621 Hs.86538 NR_109779 LINC01279 - long intergenic non-protein coding RNA 1279 ncRNA 132.667-66 chr3 191756623 191756969 + 0.666667 NA Intergenic Intergenic 295633 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 128.167-10 chr11 17997267 17997636 + 0.666667 NA intron (NR_104040, intron 5 of 11) L1MB3|LINE|L1 15596 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 219.667-19 chr3 66712962 66713469 + 0.666667 NA Intergenic Intergenic 25121 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 163.167-9 chr14 41352063 41352356 + 0.666667 NA Intergenic L1MA4|LINE|L1 -254647 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 159.667-22 chr11 56135447 56135870 + 0.666667 NA Intergenic Intergenic 2060 NM_001004064 81168 Hs.554523 NM_001004064 ENSG00000167822 OR8J3 OR11-173 olfactory receptor family 8 subfamily J member 3 protein-coding 113.167-53 chr3 137689804 137689997 + 0.666667 NA Intergenic Intergenic -74415 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 198-47 chr5 10810741 10811086 + 0.666667 NA Intergenic Intergenic -49679 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 115.333-7 chr1 186505622 186505875 + 0.666667 NA Intergenic L1M1|LINE|L1 -44634 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 137.5-53 chr22 28135859 28136283 + 0.666667 NA intron (NM_001145418, intron 6 of 22) MER5C|DNA|hAT-Charlie -215459 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 153-31 chr2 178645599 178645955 + 0.666667 NA intron (NM_001256850, intron 167 of 312) intron (NM_001256850, intron 167 of 312) 122586 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 121.333-33 chr16 57259998 57260205 + 0.666667 NA intron (NM_015993, intron 2 of 3) MER102a|DNA|hAT-Charlie 14842 NM_012106 23568 Hs.632873 NM_012106 ENSG00000102931 ARL2BP BART|BART1|RP66 ADP ribosylation factor like GTPase 2 binding protein protein-coding 290.333-10 chr9 25631805 25632667 + 0.666667 NA Intergenic Intergenic 46622 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 266.334-6 chr8 136769232 136770242 + 0.666667 NA intron (NR_147196, intron 2 of 5) THE1A-int|LTR|ERVL-MaLR 238939 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 186.833 chr1 72837440 72837994 + 0.666667 NA Intergenic Intergenic -468453 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 122-46 chr3 23370369 23370641 + 0.666667 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 167178 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 114.667-48 chr2 61122096 61122312 + 0.666667 NA 3' UTR (NM_001330432, exon 21 of 21) 3' UTR (NM_001330432, exon 21 of 21) 22771 NR_036496 339803 Hs.252433 NR_036496 ENSG00000212978 LOC339803 - uncharacterized LOC339803 ncRNA 143.5-83 chr8 50985799 50986248 + 0.666667 NA Intergenic L1M4|LINE|L1 821892 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 185-23 chr18 63454961 63455504 + 0.666667 NA Intergenic Intergenic -21726 NM_002639 5268 Hs.55279 NM_002639 ENSG00000206075 SERPINB5 PI5|maspin serpin family B member 5 protein-coding 204.333-40 chr4 104955606 104956020 + 0.666667 NA Intergenic Intergenic -190062 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 114-43 chr14 75757793 75758075 + 0.666667 NA intron (NM_015072, intron 18 of 31) intron (NM_015072, intron 18 of 31) 96688 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 183.167-29 chr21 31812056 31812331 + 0.666667 NA Intergenic Intergenic -60827 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 143.667-12 chr1 182841615 182842152 + 0.666667 NA intron (NM_001357, intron 1 of 27) intron (NM_001357, intron 1 of 27) -2292 NR_148933 647070 Hs.191518 NR_148933 LOC647070 - uncharacterized LOC647070 ncRNA 131.333-84 chr4 145356760 145357030 + 0.666667 NA Intergenic L1MA3|LINE|L1 -16476 NR_147156 105377466 Hs.405641 NR_147156 ENSG00000272727 LINC02266 - long intergenic non-protein coding RNA 2266 ncRNA 135.167-23 chr12 42378565 42378952 + 0.666667 NA intron (NM_001364830, intron 4 of 6) intron (NM_001364830, intron 4 of 6) 46960 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 136-33 chr19 37450396 37450751 + 0.666667 NA intron (NM_152484, intron 2 of 5) L1M4c|LINE|L1 16871 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 233.333-18 chr15 87063503 87063966 + 0.666667 NA Intergenic Intergenic -75308 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 169.167-24 chr2 35271945 35272442 + 0.666667 NA Intergenic L1MA6|LINE|L1 -199212 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 114.333-61 chr2 20824775 20825182 + 0.666667 NA Intergenic MER66B|LTR|ERV1 -1848 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 144.167-30 chr17 65970230 65970460 + 0.666667 NA intron (NM_001353129, intron 17 of 26) intron (NM_001353129, intron 17 of 26) -143802 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 117-28 chr14 34336368 34336607 + 0.666667 NA Intergenic Intergenic 125753 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 140.5-46 chr3 98961518 98961780 + 0.666667 NA Intergenic Intergenic -59954 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 145.667-106 chr9 100668719 100669101 + 0.666667 NA Intergenic L1MA3|LINE|L1 90831 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 199.833-6 chr11 14367159 14367510 + 0.666667 NA Intergenic L1MB4|LINE|L1 -2828 NM_001177314 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 198-56 chr7 34152700 34153070 + 0.666667 NA intron (NM_133468, intron 15 of 15) intron (NM_133468, intron 15 of 15) 247346 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 172.667-5 chr1 179471557 179472167 + 0.666667 NA intron (NR_073544, intron 16 of 25) L1MB7|LINE|L1 104086 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 187.167-45 chr8 120861245 120861675 + 0.666667 NA Intergenic L1PBa|LINE|L1 -49414 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 145.667-19 chr12 10142796 10143217 + 0.666667 NA Intergenic Intergenic -12737 NM_197947 64581 Hs.143929 NM_022570 ENSG00000172243 CLEC7A BGR|CANDF4|CD369|CLECSF12|DECTIN1|SCARE2 C-type lectin domain containing 7A protein-coding 212-25 chr3 143278599 143279000 + 0.666667 NA intron (NM_173653, intron 14 of 15) MLT1C|LTR|ERVL-MaLR -63447 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 121.167-2 chr1 38170215 38170645 + 0.666667 NA Intergenic Intergenic 44337 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 123.667-93 chr6 34629850 34630076 + 0.666667 NA intron (NM_022758, intron 2 of 3) MER44B|DNA|TcMar-Tigger -66191 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 119.833-70 chr5 67595910 67596316 + 0.666667 NA Intergenic (AAAC)n|Simple_repeat|Simple_repeat 50676 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 163.667-52 chr3 149339984 149340422 + 0.666667 NA Intergenic Intergenic -6567 NM_138786 116441 Hs.22026 NM_138786 ENSG00000163762 TM4SF18 L6D transmembrane 4 L six family member 18 protein-coding 141.333-4 chr1 118759118 118759634 + 0.666667 NA Intergenic L1MB3|LINE|L1 228967 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 152.667-41 chr2 32836727 32837006 + 0.666667 NA intron (NR_027099, intron 2 of 10) intron (NR_027099, intron 2 of 10) 11433 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 127.667-61 chr3 147858589 147859144 + 0.666667 NA Intergenic MSTB-int|LTR|ERVL-MaLR -219293 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 200.667-6 chr1 215070646 215071146 + 0.666667 NA intron (NM_001017424, intron 1 of 6) intron (NM_001017424, intron 1 of 6) -11841 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 175-47 chr5 117749215 117749554 + 0.666667 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 19023 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 281.167-9 chr7 3684720 3685215 + 0.666667 NA intron (NM_152744, intron 4 of 44) L1MD1|LINE|L1 383715 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 199-19 chr4 13488139 13488619 + 0.666667 NA Intergenic Intergenic -4014 NM_001159601 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 117.167-13 chr11 96374253 96374465 + 0.666667 NA intron (NM_024725, intron 5 of 9) intron (NM_024725, intron 5 of 9) 15457 NM_001363594 79780 Hs.525088 NM_014148 ENSG00000149231 CCDC82 HSPC048 coiled-coil domain containing 82 protein-coding 203.5-11 chr12 111544811 111545289 + 0.666667 NA intron (NR_132311, intron 5 of 23) AluYk3|SINE|Alu 54265 NM_002973 6311 Hs.76253 NM_002973 ENSG00000204842 ATXN2 ATX2|SCA2|TNRC13 ataxin 2 protein-coding 121-95 chr9 794624 795109 + 0.666667 NA Intergenic Intergenic -46831 NM_021951 1761 Hs.98586 NM_021951 ENSG00000137090 DMRT1 CT154|DMT1 doublesex and mab-3 related transcription factor 1 protein-coding 113.333-104 chr8 81183902 81184233 + 0.666667 NA Intergenic Intergenic -71999 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 124.333-86 chr6 53011057 53011393 + 0.666667 NA intron (NM_014920, intron 11 of 13) intron (NM_014920, intron 11 of 13) 15605 NR_001445 125050 NR_001445 ENSG00000202198 RN7SK 7SK RNA component of 7SK nuclear ribonucleoprotein snRNA 122.5-28 chr13 112004609 112004813 + 0.666667 NA intron (NR_120392, intron 1 of 3) MIRb|SINE|MIR 32401 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 139.167-8 chr11 24486428 24486725 + 0.666667 NA Intergenic L1MEf|LINE|L1 -10477 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 222-34 chr7 29995980 29996328 + 0.666667 NA Intergenic L1MEc|LINE|L1 -5865 NM_001145514 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 136.333 chr1 14210450 14210719 + 0.666667 NA Intergenic Charlie1b|DNA|hAT-Charlie 209389 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 154-48 chr22 32434732 32435113 + 0.666667 NA intron (NM_174932, intron 8 of 14) intron (NM_174932, intron 8 of 14) 22464 NM_174932 254240 Hs.372939 NM_174932 ENSG00000184459 BPIFC BPIL2 BPI fold containing family C protein-coding 113.5-7 chr1 215302362 215302625 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL 219756 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 122.667-49 chr20 5712451 5712767 + 0.666667 NA Intergenic L1MEg|LINE|L1 -37778 NM_001303478 149840 Hs.529340 NM_152504 ENSG00000171984 SHLD1 C20orf196|RINN3 shieldin complex subunit 1 protein-coding 175.333-62 chr7 100421158 100421558 + 0.666667 NA intron (NM_001258008, intron 2 of 15) intron (NM_001258008, intron 2 of 15) 7345 NM_001258008 55063 Hs.105191 NM_017984 ENSG00000078487 ZCWPW1 ZCW1 zinc finger CW-type and PWWP domain containing 1 protein-coding 129.333-67 chr4 93601662 93602140 + 0.666667 NA intron (NM_001286838, intron 12 of 14) intron (NM_001286838, intron 12 of 14) -226852 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 146.167-18 chr14 55031609 55031884 + 0.666667 NA intron (NM_080867, intron 1 of 1) intron (NM_080867, intron 1 of 1) 4510 NM_199421 122809 Hs.744302 NM_080867 ENSG00000180008 SOCS4 SOCS7 suppressor of cytokine signaling 4 protein-coding 113.667-97 chr4 186270368 186270565 + 0.666667 NA intron (NM_000128, intron 2 of 14) L1PB4|LINE|L1 4277 NM_001354804 2160 Hs.1430 NM_000128 ENSG00000088926 F11 FXI|PTA coagulation factor XI protein-coding 119-85 chr6 110800821 110801085 + 0.666667 NA intron (NM_001300963, intron 1 of 13) L1PA17|LINE|L1 -13668 NM_001287215 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 170-50 chr3 94902955 94903416 + 0.666667 NA Intergenic Intergenic -35078 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 139.333-60 chr3 100357135 100357424 + 0.666667 NA 3' UTR (NM_020202, exon 10 of 10) 3' UTR (NM_020202, exon 10 of 10) 22522 NM_020202 56954 Hs.439152 NM_020202 ENSG00000114021 NIT2 HEL-S-8a nitrilase family member 2 protein-coding 155-59 chr4 165702404 165702848 + 0.666667 NA intron (NR_121676, intron 3 of 5) intron (NR_121676, intron 3 of 5) 17987 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 117.667-136 chrX 96673357 96673655 + 0.666667 NA Intergenic Intergenic -11157 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 144.833-50 chr3 109259337 109259629 + 0.666667 NA Intergenic L2a|LINE|L2 57034 NM_138815 151871 Hs.351113 NM_138815 ENSG00000163530 DPPA2 CT100|ECAT15-2|PESCRG1 developmental pluripotency associated 2 protein-coding 124.167-33 chr16 27331570 27331971 + 0.666667 NA intron (NM_000418, intron 2 of 10) L1MC|LINE|L1 17796 NM_001257997 3566 Hs.513457 NM_000418 ENSG00000077238 IL4R CD124|IL-4RA|IL4RA interleukin 4 receptor protein-coding 141.833-9 chr12 31493211 31493617 + 0.666667 NA intron (NM_144973, intron 2 of 20) AluSz6|SINE|Alu -96509 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 221.167-10 chr15 44291355 44291859 + 0.666667 NA intron (NR_157849, intron 1 of 9) intron (NR_157849, intron 1 of 9) 2888 NR_157849 113201 Hs.512867 NM_138423 ENSG00000166734 CASC4 H63 cancer susceptibility 4 protein-coding 155-29 chr17 66287109 66287499 + 0.666667 NA Intergenic Intergenic -15309 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 113.667-103 chr5 95419309 95419510 + 0.666667 NA intron (NM_152548, intron 4 of 9) intron (NM_152548, intron 4 of 9) 28043 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 137.333-81 chr5 120930973 120931323 + 0.666667 NA Intergenic Intergenic -391402 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 233.834-10 chr3 153543311 153543858 + 0.666667 NA intron (NR_146713, intron 4 of 6) L1PB4|LINE|L1 59089 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 133.5-62 chr5 133380962 133381495 + 0.666667 NA intron (NM_015082, intron 4 of 15) L1ME3B|LINE|L1 46478 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 254-8 chr16 3179681 3180410 + 0.666667 NA Intergenic Intergenic -8159 NM_001370641 4992 Hs.664502 NM_012360 ENSG00000168124 OR1F1 OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023 olfactory receptor family 1 subfamily F member 1 protein-coding 203.5-12 chr13 91466528 91466984 + 0.666667 NA intron (NM_004466, intron 2 of 7) intron (NM_004466, intron 2 of 7) 68135 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 271.167-12 chr4 36127038 36127493 + 0.666667 NA intron (NR_146894, intron 21 of 32) intron (NR_146894, intron 21 of 32) 116674 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 205.5-13 chr17 82612660 82613043 + 0.666667 NA Intergenic AluJo|SINE|Alu 35593 NM_019613 56270 Hs.132161 NM_019613 ENSG00000141580 WDR45B NEDSBAS|WDR45L|WIPI-3|WIPI3 WD repeat domain 45B protein-coding 173.833-58 chr8 28419550 28419876 + 0.666667 NA Intergenic Intergenic -33253 NM_018660 55893 Hs.435535 NM_018660 ENSG00000186918 ZNF395 HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 zinc finger protein 395 protein-coding 193-2 chr1 61904836 61905357 + 0.666667 NA intron (NM_001350145, intron 24 of 43) intron (NM_001350145, intron 24 of 43) 59021 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 208-38 chr7 98495289 98495922 + 0.666667 NA Intergenic Intergenic -94515 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 145.667-59 chr21 23593768 23594049 + 0.666667 NA Intergenic L1MC1|LINE|L1 -209073 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 154.5-8 chr10 84594739 84595101 + 0.666667 NA Intergenic MIRc|SINE|MIR 169751 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 198.667-36 chr3 94808731 94809329 + 0.666667 NA Intergenic L1MA6|LINE|L1 -129233 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 132.333-104 chr8 84851445 84851816 + 0.666667 NA intron (NM_001287244, intron 4 of 7) intron (NM_001287244, intron 4 of 7) 145703 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 151-3 chr1 89987627 89988075 + 0.666667 NA Intergenic Intergenic 7115 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem nuclear organelle associated protein 8 pseudogene 4 pseudo 122.5-67 chr4 49105366 49105806 + 0.666667 NA Intergenic (CATTC)n|Satellite|Satellite 118944 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 119.5-63 chr3 59521025 59521528 + 0.666667 NA Intergenic Intergenic 137221 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 160-33 chr16 1673767 1674091 + 0.666667 NA exon (NM_020825, exon 20 of 20) exon (NM_020825, exon 20 of 20) -4350 NM_144570 90861 Hs.513261 NM_144570 ENSG00000206053 JPT2 C16orf34|HN1L|L11 Jupiter microtubule associated homolog 2 protein-coding 114-33 chr12 59520144 59520577 + 0.666667 NA Intergenic Intergenic -75669 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 133-77 chr5 174084357 174084678 + 0.666667 NA intron (NM_015980, intron 3 of 4) intron (NM_015980, intron 3 of 4) 38811 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 132.833-24 chr15 100992109 100992438 + 0.666667 NA intron (NM_024652, intron 6 of 33) L1ME4b|LINE|L1 72916 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 168.833-38 chr4 22949893 22950205 + 0.666667 NA Intergenic Intergenic 235960 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 196.333-23 chr20 17020676 17021167 + 0.666667 NA Intergenic Intergenic -205186 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 126.333-32 chr14 56550012 56550453 + 0.666667 NA non-coding (NR_135241, exon 2 of 2) non-coding (NR_135241, exon 2 of 2) -29566 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 149-40 chr2 88375894 88376233 + 0.666667 NA Intergenic L1ME3B|LINE|L1 76630 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 162.833-45 chr7 52618929 52619187 + 0.666667 NA Intergenic Intergenic -416575 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 172.333-76 chr9 27967914 27968318 + 0.666667 NA intron (NM_001354574, intron 5 of 5) L2c|LINE|L2 -394250 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 120.833-61 chr6 13915435 13915643 + 0.666667 NA Intergenic L2c|LINE|L2 -8907 NM_001165034 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 217.167-9 chr17 60283424 60284007 + 0.666667 NA intron (NM_032582, intron 5 of 33) L2c|LINE|L2 -52070 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 221.167-21 chr4 139256959 139257290 + 0.666667 NA Intergenic Intergenic 23101 NM_032623 84709 Hs.710036 NM_032623 ENSG00000137463 MGARP C4orf49|CESP-1|HUMMR|OSAP mitochondria localized glutamic acid rich protein protein-coding 126.667-8 chr1 236380365 236380618 + 0.666667 NA Intergenic Intergenic -13795 NM_145861 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 126-52 chr20 16273961 16274254 + 0.666667 NA intron (NM_024704, intron 25 of 25) intron (NM_024704, intron 25 of 25) -288225 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 124.667-64 chr2 196241967 196242309 + 0.666667 NA exon (NM_001304840, exon 18 of 27) exon (NM_001304840, exon 18 of 27) -17886 NR_110226 101927482 Hs.191841 NR_110225 HECW2-AS1 - HECW2 antisense RNA 1 ncRNA 204.167-22 chr4 34215841 34216434 + 0.666667 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 53610 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 156.667-65 chr4 84016703 84017075 + 0.666667 NA intron (NR_125909, intron 7 of 8) intron (NR_125909, intron 7 of 8) 282280 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 165.333-11 chr12 23290900 23291281 + 0.666667 NA Intergenic MamGypLTR3|LTR|Gypsy 115454 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 156.667-33 chr14 77142886 77143198 + 0.666667 NA Intergenic Intergenic -1251 NM_174976 283576 Hs.525485 NM_174976 ENSG00000177108 ZDHHC22 C14orf59 zinc finger DHHC-type containing 22 protein-coding 146.667-97 chr9 97629387 97629727 + 0.666667 NA intron (NM_139246, intron 1 of 9) intron (NM_139246, intron 1 of 9) 3811 NM_139246 158427 Hs.723236 NM_139246 ENSG00000136925 TSTD2 C9orf97 thiosulfate sulfurtransferase like domain containing 2 protein-coding 232.5-15 chr17 58813775 58814525 + 0.666667 NA intron (NM_014906, intron 1 of 6) L2c|LINE|L2 58281 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 190.667-48 chr5 143390833 143391225 + 0.666667 NA intron (NR_157096, intron 1 of 7) intron (NR_157096, intron 1 of 7) 12254 NM_001364182 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 168-56 chr5 65355497 65355871 + 0.666667 NA intron (NR_135689, intron 7 of 25) intron (NR_135689, intron 7 of 25) 126236 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 207-9 chr12 101393998 101394402 + 0.666667 NA 3' UTR (NM_001177, exon 6 of 6) 3' UTR (NM_001177, exon 6 of 6) 13572 NM_001177 400 Hs.372616 NM_001177 ENSG00000120805 ARL1 ARFL1 ADP ribosylation factor like GTPase 1 protein-coding 211.667-39 chr7 80143274 80143704 + 0.666667 NA intron (NM_001256414, intron 1 of 7) intron (NM_001256414, intron 1 of 7) 7705 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 180.333-57 chr8 84375085 84375390 + 0.666667 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -40247 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 157.5-19 chr14 62616058 62616475 + 0.666667 NA Intergenic Intergenic 429192 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 140.167-3 chr1 219125674 219126064 + 0.666667 NA intron (NR_038845, intron 3 of 4) intron (NR_038845, intron 3 of 4) 47919 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 156-81 chr7 57150520 57150974 + 0.666667 NA Intergenic L1M4c|LINE|L1 -10883 NM_033273 90827 Hs.616660 NM_033273 ENSG00000185177 ZNF479 HKr19|KR19 zinc finger protein 479 protein-coding 148.667-73 chr7 37361128 37361473 + 0.666667 NA intron (NM_001206480, intron 1 of 21) L1ME1|LINE|L1 -7632 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 236.5-11 chr12 38103804 38104290 + 0.666667 NA Intergenic L1PA14|LINE|L1 -212727 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 174.5-6 chr10 81426134 81426437 + 0.666667 NA Intergenic Intergenic -448909 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 164.667-76 chr8 142898652 142898919 + 0.666667 NA Intergenic L1MB4|LINE|L1 -18965 NM_001026213 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 123-18 chr13 84633858 84634143 + 0.666667 NA Intergenic Intergenic -149654 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 260-17 chr4 53142445 53142841 + 0.666667 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 223418 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 113.667-92 chr4 71092077 71092348 + 0.666667 NA Intergenic Intergenic -95047 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 231.667-13 chr14 72205613 72206155 + 0.666667 NA intron (NM_001370288, intron 2 of 16) L1ME3G|LINE|L1 272357 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 132.833-10 chr10 105453413 105453683 + 0.666667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 366785 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 240.667-37 chr6 18668554 18669283 + 0.666667 NA intron (NR_149116, intron 5 of 7) intron (NR_149116, intron 5 of 7) 97134 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 114.5-50 chr2 109252926 109253140 + 0.666667 NA intron (NM_001099289, intron 1 of 9) AluSz|SINE|Alu 60592 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 164.333-31 chr2 101335613 101335951 + 0.666667 NA Intergenic AluJb|SINE|Alu 26332 NR_049881 100847007 NR_049881 ENSG00000264857 MIR5696 - microRNA 5696 ncRNA 116-78 chr5 84618624 84618883 + 0.666667 NA Intergenic Intergenic -233873 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 117.667-101 chr5 53983347 53983848 + 0.666667 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -31998 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 163.5-32 chr2 9825751 9826003 + 0.666667 NA Intergenic AluSg4|SINE|Alu -17565 NM_001318976 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 115.333-33 chr14 62820574 62820818 + 0.666667 NA intron (NM_139318, intron 8 of 10) L1PA13|LINE|L1 224762 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 174-14 chr11 113488914 113489305 + 0.666667 NA Intergenic Intergenic -13711 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 148.833-35 chr2 224254306 224254572 + 0.666667 NA Intergenic Intergenic 147555 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 159.667-61 chr3 95294736 95295211 + 0.666667 NA Intergenic Intergenic 356710 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 242.667-30 chr8 129576693 129577217 + 0.666667 NA intron (NR_130917, intron 1 of 3) L1ME3A|LINE|L1 -1937 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 150.667-78 chr5 152998761 152999157 + 0.666667 NA Intergenic Tigger18a|DNA|TcMar-Tigger -26610 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 154-58 chr4 30954537 30954961 + 0.666667 NA intron (NM_001173523, intron 2 of 2) MIR3|SINE|MIR -216395 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 166.334 chr11 94020930 94021540 + 0.666667 NA promoter-TSS (NM_001098672) promoter-TSS (NM_001098672) -119 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 305.5-2 chr2 103500266 103501143 + 0.666667 NA Intergenic Intergenic -516275 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 144.667-18 chr10 106209640 106209977 + 0.666667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 69643 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 202.667-34 chr3 185806538 185807071 + 0.666667 NA intron (NR_138486, intron 2 of 15) intron (NR_138486, intron 2 of 15) 14327 NM_001291873 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 142.167-82 chr8 125690601 125691072 + 0.666667 NA Intergenic AluSg|SINE|Alu 258627 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 119.667-63 chr3 71649842 71650129 + 0.666667 NA Intergenic Intergenic -65996 NM_032682 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 125-77 chr6 98035820 98036031 + 0.666667 NA Intergenic Intergenic 11394 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 153.833-6 chr1 179551207 179551550 + 0.666667 NA exon (NM_014625, exon 8 of 8) exon (NM_014625, exon 8 of 8) 24570 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 134.333-95 chr6 64825085 64825341 + 0.666667 NA intron (NM_001292009, intron 19 of 43) L2a|LINE|L2 -476205 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 157-45 chr2 240666763 240667136 + 0.666667 NA Intergenic L1MC3|LINE|L1 15936 NM_001102467 653437 Hs.437167 NM_001102467 ENSG00000185176 AQP12B INSSA3 aquaporin 12B protein-coding 142.167-25 chr16 1704316 1704620 + 0.666667 NA Intergenic AluJr|SINE|Alu -1715 NM_001318852 23162 Hs.207763 NM_015133 ENSG00000138834 MAPK8IP3 JIP-3|JIP3|JSAP1|NEDBA|SYD2|syd mitogen-activated protein kinase 8 interacting protein 3 protein-coding 113.834-2 chr2 39688269 39688783 + 0.666667 NA intron (NM_152390, intron 1 of 3) intron (NM_152390, intron 1 of 3) 22609 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 295-3 chr3 137171524 137172155 + 0.666667 NA Intergenic MLT1H2|LTR|ERVL-MaLR 213856 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 152-29 chr2 52033991 52034383 + 0.666667 NA intron (NR_135237, intron 7 of 10) MSTD|LTR|ERVL-MaLR -336461 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 157.333-21 chr14 69168395 69168692 + 0.666667 NA Intergenic Intergenic -15346 NM_001284206 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 216.333-39 chr5 139093172 139093697 + 0.666667 NA intron (NM_022464, intron 3 of 9) intron (NM_022464, intron 3 of 9) 104934 NM_001037633 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 141.167-68 chr6 51829106 51829536 + 0.666667 NA intron (NM_138694, intron 52 of 66) intron (NM_138694, intron 52 of 66) 207451 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 144.333-42 chr17 80723939 80724382 + 0.666667 NA intron (NM_020761, intron 4 of 33) intron (NM_020761, intron 4 of 33) 81472 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 170-19 chr15 27352383 27352835 + 0.666667 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -191290 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 188-52 chr5 150922035 150922533 + 0.666667 NA Intergenic L1MDa|LINE|L1 -17301 NM_001172832 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 163.667-39 chr2 100445135 100445526 + 0.666667 NA Intergenic AluSp|SINE|Alu -25152 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 119-56 chr2 126786295 126786547 + 0.666667 NA Intergenic Intergenic -112469 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 146-25 chr15 85530316 85530614 + 0.666667 NA intron (NM_007200, intron 3 of 36) intron (NM_007200, intron 3 of 36) -89485 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 133-20 chr12 21174437 21174643 + 0.666667 NA intron (NM_006446, intron 3 of 14) intron (NM_006446, intron 3 of 14) 43346 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 180.5-25 chr2 20163256 20163698 + 0.666667 NA Intergenic AluSz|SINE|Alu 61653 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 116.333-10 chr1 162305360 162305614 + 0.666667 NA intron (NM_014697, intron 4 of 9) intron (NM_014697, intron 4 of 9) -37059 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 201.667-49 chr8 85193641 85194006 + 0.666667 NA intron (NM_001083589, intron 1 of 7) L1ME1|LINE|L1 6158 NM_001083589 1875 Hs.445758 NM_001951 ENSG00000133740 E2F5 E2F-5 E2F transcription factor 5 protein-coding 134.833-51 chr5 76565952 76566317 + 0.666667 NA intron (NM_006633, intron 3 of 35) L2a|LINE|L2 18725 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 114.833-38 chr2 239353194 239353473 + 0.666667 NA intron (NM_006037, intron 1 of 26) intron (NM_006037, intron 1 of 26) -1529 NR_039948 100616360 NR_039948 ENSG00000264292 MIR2467 mir-2467 microRNA 2467 ncRNA 121-42 chr19 35710596 35710935 + 0.666667 NA intron (NM_014383, intron 1 of 6) AluSx|SINE|Alu 6207 NM_001316902 27033 Hs.99430 NM_014383 ENSG00000011590 ZBTB32 FAXF|FAZF|Rog|TZFP|ZNF538 zinc finger and BTB domain containing 32 protein-coding 113.167-81 chr8 140910030 140910292 + 0.666667 NA intron (NM_001352700, intron 1 of 34) intron (NM_001352700, intron 1 of 34) 90843 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 167.5-20 chr12 40908228 40908683 + 0.666667 NA promoter-TSS (NM_175038) promoter-TSS (NM_175038) 98 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 158.667-36 chr18 22844200 22844551 + 0.666667 NA Intergenic Intergenic -57538 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 188-40 chr4 45400915 45401377 + 0.666667 NA Intergenic MER57A-int|LTR|ERV1 -674512 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 245.667 chr1 161900439 161901202 + 0.666667 NA intron (NM_007348, intron 14 of 15) intron (NM_007348, intron 14 of 15) 123645 NM_001297713 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 117.333-55 chr20 13457215 13457563 + 0.666667 NA intron (NM_017714, intron 11 of 13) intron (NM_017714, intron 11 of 13) 181543 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 138-59 chr2 165352207 165352537 + 0.666667 NA intron (NM_001040143, intron 17 of 27) intron (NM_001040143, intron 17 of 27) 58317 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 224-18 chr17 15512152 15512659 + 0.666667 NA intron (NM_145301, intron 5 of 5) LTR89|LTR|ERVL? -41569 NR_146601 94145 Hs.697356 NR_146601 CDRT3 - CMT1A duplicated region transcript 3 ncRNA 136-49 chr3 47386753 47387097 + 0.666667 NA intron (NM_015466, intron 1 of 24) intron (NM_015466, intron 1 of 24) 5904 NM_015466 25930 Hs.25524 NM_015466 ENSG00000076201 PTPN23 HD-PTP|HDPTP|PTP-TD14 protein tyrosine phosphatase non-receptor type 23 protein-coding 124-78 chr6 2334672 2335084 + 0.666667 NA intron (NR_046229, intron 4 of 6) LTR45B|LTR|ERV1 89125 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 116.333-33 chr12 60232574 60232810 + 0.666667 NA Intergenic MER1B|DNA|hAT-Charlie 543322 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 117-84 chr4 163812878 163813231 + 0.666667 NA intron (NM_001166373, intron 3 of 7) MER46C|DNA|TcMar-Tigger -199520 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 147-45 chr21 24929156 24929498 + 0.666667 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 88777 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 167.833-22 chr16 64208750 64209253 + 0.666667 NA Intergenic Intergenic 913062 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 118.667-9 chr1 167020520 167020838 + 0.666667 NA intron (NM_032858, intron 10 of 11) L2|LINE|L2 31399 NM_032858 84944 Hs.651245 NM_032858 ENSG00000143194 MAEL CT128|SPATA35 maelstrom spermatogenic transposon silencer protein-coding 175.5-66 chrX 67455697 67456017 + 0.666667 NA Intergenic L1MB2|LINE|L1 -88164 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 215-13 chr17 65814493 65815060 + 0.666667 NA intron (NR_126542, intron 1 of 5) Tigger6b|DNA|TcMar-Tigger 11675 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 123.5-36 chr18 1711738 1712044 + 0.666667 NA Intergenic L1MB8|LINE|L1 -352262 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 151.833-14 chr12 678908 679224 + 0.666667 NA Intergenic Intergenic -15621 NM_016533 4815 Hs.655804 NM_016533 ENSG00000171840 NINJ2 - ninjurin 2 protein-coding 150.333-65 chr3 17760005 17760454 + 0.666667 NA Intergenic Intergenic 17285 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 113.667-27 chr11 95087401 95087584 + 0.666667 NA Intergenic Intergenic -2354 NM_015036 23052 Hs.167115 NM_015036 ENSG00000149218 ENDOD1 - endonuclease domain containing 1 protein-coding 114-106 chr9 29069816 29070112 + 0.666667 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 142335 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 158-53 chr8 22336750 22337050 + 0.666667 NA intron (NM_001330480, intron 20 of 21) L1MC2|LINE|L1 -30378 NM_001351658 23516 Hs.491232 NM_015359 ENSG00000104635 SLC39A14 HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19 solute carrier family 39 member 14 protein-coding 178.167-35 chr4 103822589 103822910 + 0.666667 NA Intergenic L1MB8|LINE|L1 -102764 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 166-78 chrX 75336299 75336790 + 0.666667 NA Intergenic L1PB3|LINE|L1 62459 NM_145052 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 122.667-31 chr15 97412941 97413270 + 0.666667 NA intron (NR_120324, intron 3 of 4) intron (NR_120324, intron 3 of 4) 108706 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 193.333-50 chr7 34690232 34690644 + 0.666667 NA intron (NM_001300934, intron 2 of 6) L1PB4|LINE|L1 32199 NM_001300934 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 325.333-4 chr2 125962370 125963267 + 0.666667 NA Intergenic Intergenic 155167 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 114.667-5 chr1 103480945 103481134 + 0.666667 NA intron (NM_001347929, intron 1 of 5) Kanga1|DNA|TcMar-Tc2 44472 NM_001347929 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 148.667-10 chr11 3940768 3941099 + 0.666667 NA intron (NM_001277962, intron 1 of 12) MIR|SINE|MIR 84871 NR_039835 100616453 NR_039835 ENSG00000284525 MIR4687 - microRNA 4687 ncRNA 225.833-9 chr2 228463632 228464234 + 0.666667 NA Intergenic Intergenic 147462 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 171.833-16 chr15 33013816 33014152 + 0.666667 NA intron (NM_001277313, intron 6 of 20) intron (NM_001277313, intron 6 of 20) 54190 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 130-62 chr20 35852586 35852901 + 0.666667 NA intron (NM_016436, intron 4 of 17) AluSg|SINE|Alu 80728 NM_016436 51230 Hs.517044 NM_016436 ENSG00000025293 PHF20 C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP PHD finger protein 20 protein-coding 122.333-93 chr5 113750494 113750795 + 0.666667 NA Intergenic Intergenic 236950 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 118.667-76 chr3 23729850 23730116 + 0.666667 NA Intergenic Intergenic -75972 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 190.667-62 chrX 53720218 53720535 + 0.666667 NA Intergenic L1ME1|LINE|L1 -33657 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 165.167-39 chr4 131255195 131255699 + 0.666667 NA Intergenic Intergenic -509391 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 189.167-43 chr8 24817041 24817324 + 0.666667 NA Intergenic Intergenic -96579 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 169.834-2 chr10 39019768 39020404 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 323490 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 168.833-22 chr18 63184223 63184540 + 0.666667 NA intron (NM_000633, intron 2 of 2) MamRep605|LTR?|LTR? 134999 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 115.833-16 chr13 63487586 63487804 + 0.666667 NA Intergenic Intergenic -159601 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 162-6 chr1 78061195 78061488 + 0.666667 NA intron (NM_017655, intron 1 of 5) intron (NM_017655, intron 1 of 5) 15375 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 145-40 chr18 47728568 47728926 + 0.666667 NA Intergenic Intergenic 201912 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 118.833-39 chr2 108137176 108137518 + 0.666667 NA Intergenic Intergenic 80494 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 145.5-55 chr4 103536000 103536278 + 0.666667 NA Intergenic L1PA4|LINE|L1 111097 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 120.667-68 chr2 229451569 229451928 + 0.666667 NA intron (NM_139072, intron 7 of 12) intron (NM_139072, intron 7 of 12) -180461 NM_001100818 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 235.333-11 chr16 76211991 76212503 + 0.666667 NA Intergenic L1PA16|LINE|L1 -65154 NM_001322179 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 171.667-13 chr11 78423238 78423631 + 0.666667 NA TTS (NR_120564) TTS (NR_120564) -5614 NM_080491 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 138-100 chr7 69902709 69903005 + 0.666667 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 304382 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 148.667-27 chr18 5096838 5097217 + 0.666667 NA intron (NR_146900, intron 3 of 3) intron (NR_146900, intron 3 of 3) 15845 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 143.667-97 chr7 86671281 86671776 + 0.666667 NA intron (NM_001363522, intron 1 of 4) intron (NM_001363522, intron 1 of 4) 27614 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 194-12 chr12 45680469 45680807 + 0.666667 NA Intergenic MER65C|LTR|ERV1 47283 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 173.333-50 chr4 115012560 115012862 + 0.666667 NA intron (NM_022569, intron 2 of 13) L1MA3|LINE|L1 100909 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 212.833-7 chr16 5541444 5542089 + 0.666667 NA Intergenic Intergenic 74484 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 205.667-12 chr12 77840145 77840666 + 0.666667 NA intron (NM_001024383, intron 1 of 39) intron (NM_001024383, intron 1 of 39) 9511 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 115.5-92 chr6 133647596 133647849 + 0.666667 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -173425 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 171.667-54 chr3 107766986 107767388 + 0.666667 NA intron (NM_001276286, intron 10 of 16) L1PA7|LINE|L1 110881 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 213.333-2 chr1 40581660 40582063 + 0.666667 NA Intergenic AluSc|SINE|Alu 50224 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 173.667-30 chr2 177324525 177324940 + 0.666667 NA intron (NR_026966, intron 5 of 8) L2|LINE|L2 -10850 NR_106767 102465255 NR_106767 ENSG00000278418 MIR6512 hsa-mir-6512|mir-6512 microRNA 6512 ncRNA 138.167-63 chr5 101327594 101327894 + 0.666667 NA Intergenic Intergenic -424462 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 145.167-56 chr5 9999868 10000192 + 0.666667 NA Intergenic L1PA14|LINE|L1 -96206 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 127.334-3 chr6 12027395 12028035 + 0.666667 NA intron (NM_002114, intron 2 of 8) intron (NM_002114, intron 2 of 8) 15403 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 151-37 chr2 215518806 215519232 + 0.666667 NA Intergenic MER102a|DNA|hAT-Charlie 65312 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 182.833-17 chr14 61284389 61284871 + 0.666667 NA Intergenic Intergenic -3292 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 177.333-70 chr9 82104163 82104451 + 0.666667 NA Intergenic Intergenic 115535 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 117.333-103 chr8 19112123 19112353 + 0.666667 NA Intergenic MIR|SINE|MIR -98535 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 174.833-30 chr21 30113508 30113807 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger 53148 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 134.5-36 chr18 22198277 22198753 + 0.666667 NA intron (NM_005257, intron 6 of 6) intron (NM_005257, intron 6 of 6) 29078 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 116-69 chr5 4960051 4960265 + 0.666667 NA Intergenic MER31A|LTR|ERV1 -74201 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 236.667-11 chr16 6283986 6284440 + 0.666667 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 264510 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 117.167-82 chr6 56826132 56826538 + 0.666667 NA intron (NM_001144770, intron 2 of 94) intron (NM_001144770, intron 2 of 94) 17330 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 174-51 chr6 74024207 74024666 + 0.666667 NA Intergenic L1PA16|LINE|L1 -45015 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 120.167-77 chr8 78125043 78125385 + 0.666667 NA Intergenic Intergenic -391126 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 177-29 chr18 32293618 32294129 + 0.666667 NA intron (NM_001242409, intron 3 of 5) L1MC4|LINE|L1 103834 NM_001308171 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 115.333-104 chr8 18631975 18632360 + 0.666667 NA intron (NM_015310, intron 11 of 15) intron (NM_015310, intron 11 of 15) 176700 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 161.333-55 chr4 185946057 185946522 + 0.666667 NA intron (NM_001270771, intron 1 of 23) intron (NM_001270771, intron 1 of 23) 10083 NM_021069 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 140-18 chr13 63546849 63547119 + 0.666667 NA Intergenic Intergenic -190451 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 120.667-20 chr11 73788953 73789182 + 0.666667 NA intron (NR_134658, intron 1 of 6) intron (NR_134658, intron 1 of 6) 1193 NM_001318498 51642 Hs.503239 NM_016055 ENSG00000175581 MRPL48 CGI-118|HSPC290|L48MT|MRP-L48 mitochondrial ribosomal protein L48 protein-coding 175-21 chr14 81134074 81134466 + 0.666667 NA intron (NM_000369, intron 8 of 9) AluSp|SINE|Alu 68564 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 306.333-4 chr4 76851753 76852620 + 0.666667 NA Intergenic L2a|LINE|L2 45958 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 148.833-61 chr8 109565156 109565574 + 0.666667 NA 3' UTR (NM_001278938, exon 7 of 7) 3' UTR (NM_001278938, exon 7 of 7) 24739 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 128.667-20 chr10 83045087 83045557 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR 631767 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 146.667-68 chr5 64097086 64097366 + 0.666667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -68617 NM_178532 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 183.167-42 chr5 30120362 30120667 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR 239954 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 119.5-68 chr4 53585519 53585954 + 0.666667 NA intron (NM_001126328, intron 1 of 10) MLT1C|LTR|ERVL-MaLR 5750 NM_001126328 84708 Hs.518760 NM_032622 ENSG00000072201 LNX1 LNX|MPDZ|PDZRN2 ligand of numb-protein X 1 protein-coding 120.667-22 chr11 94972453 94972736 + 0.666667 NA intron (NM_016403, intron 1 of 6) intron (NM_016403, intron 1 of 6) 962 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 247-5 chr12 42451973 42452554 + 0.666667 NA Intergenic Intergenic 31352 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 240-25 chr3 87216908 87217452 + 0.666667 NA Intergenic Intergenic 9097 NR_039958 100616161 NR_039958 ENSG00000264119 MIR4795 - microRNA 4795 ncRNA 130.667-48 chr22 45154199 45154540 + 0.666667 NA intron (NR_038956, intron 1 of 2) intron (NR_038956, intron 1 of 2) -1785 NR_038957 100506714 Hs.189902 NR_038956 NUP50-DT NUP50-AS1 NUP50 divergent transcript ncRNA 220.833-22 chr6 128894391 128894900 + 0.666667 NA intron (NM_000426, intron 1 of 64) Charlie1|DNA|hAT-Charlie 11504 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 113.333-22 chr11 27692716 27693018 + 0.666667 NA intron (NR_033312, intron 8 of 8) intron (NR_033312, intron 8 of 8) 6800 NM_170734 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 145-21 chr12 7402323 7402726 + 0.666667 NA intron (NM_001297650, intron 6 of 19) intron (NM_001297650, intron 6 of 19) 41661 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 128.333-52 chr18 22849885 22850182 + 0.666667 NA Intergenic Intergenic -63196 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 114.667-29 chr14 58332952 58333240 + 0.666667 NA intron (NM_002892, intron 11 of 23) intron (NM_002892, intron 11 of 23) 34541 NM_002892 5926 Hs.161000 NM_002892 ENSG00000032219 ARID4A RBBP-1|RBBP1|RBP-1|RBP1 AT-rich interaction domain 4A protein-coding 122.667-38 chr18 1166765 1167087 + 0.666667 NA Intergenic Intergenic 192703 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 158.167-25 chr2 141704586 141704866 + 0.666667 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 426975 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 138.5-75 chr7 78561108 78561502 + 0.666667 NA intron (NM_001301128, intron 3 of 20) intron (NM_001301128, intron 3 of 20) 214063 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 115-8 chr10 10441373 10441604 + 0.666667 NA intron (NR_120637, intron 1 of 3) intron (NR_120637, intron 1 of 3) 20861 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 177.833-36 chr5 119365240 119365573 + 0.666667 NA intron (NM_014350, intron 1 of 1) intron (NM_014350, intron 1 of 1) 9387 NM_014350 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 185.5-49 chr8 63763072 63763356 + 0.666667 NA Intergenic L1MD1|LINE|L1 -6216 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 118.667-70 chr20 21420061 21420349 + 0.666667 NA Intergenic L1MA5|LINE|L1 -22679 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 157.667-16 chr12 24293190 24293494 + 0.666667 NA intron (NM_152989, intron 3 of 17) Arthur1B|DNA|hAT-Tip100 70071 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 154.167-21 chr15 64705118 64705497 + 0.666667 NA Intergenic Intergenic -2026 NM_002537 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 212.834-4 chr6 127079718 127080383 + 0.666667 NA Intergenic MER127|DNA|TcMar-Tigger -38621 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 183 chr1 67255935 67256450 + 0.666667 NA intron (NM_144701, intron 10 of 10) intron (NM_144701, intron 10 of 10) -51172 NM_001258215 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 144.833-74 chr8 129704521 129705057 + 0.666667 NA Intergenic MamGypLTR1c|LTR|Gypsy -24550 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 220.334-13 chr9 26942968 26943841 + 0.666667 NA intron (NM_001321546, intron 1 of 12) intron (NM_001321546, intron 1 of 12) -3586 NM_001099223 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 167.333-45 chr3 84777047 84777422 + 0.666667 NA intron (NR_033860, intron 10 of 20) L1MA4|LINE|L1 92341 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 121.667-57 chr20 50549642 50549947 + 0.666667 NA intron (NM_001278618, intron 1 of 8) intron (NM_001278618, intron 1 of 8) -35992 NR_030375 693230 NR_030375 ENSG00000208018 MIR645 MIRN645|hsa-mir-645 microRNA 645 ncRNA 138.333-59 chr2 67816828 67817057 + 0.666667 NA intron (NR_110271, intron 2 of 2) intron (NR_110271, intron 2 of 2) 8620 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 135-51 chr20 31746246 31746500 + 0.666667 NA intron (NM_012112, intron 2 of 17) intron (NM_012112, intron 2 of 17) 7083 NM_012112 22974 Hs.244580 NM_012112 ENSG00000088325 TPX2 C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100 TPX2 microtubule nucleation factor protein-coding 216.167-24 chr5 133065668 133066070 + 0.666667 NA intron (NM_002154, intron 2 of 18) intron (NM_002154, intron 2 of 18) 13856 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 190 chr1 42265130 42265562 + 0.666667 NA intron (NM_001198850, intron 3 of 12) intron (NM_001198850, intron 3 of 12) 69609 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 121.333-14 chr11 28647414 28647748 + 0.666667 NA Intergenic Intergenic -170033 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 119-75 chr4 91072572 91072839 + 0.666667 NA intron (NM_001145065, intron 9 of 10) MIR|SINE|MIR 837674 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 117.333-84 chr4 161462452 161462653 + 0.666667 NA intron (NM_001128428, intron 12 of 14) MIR|SINE|MIR -560181 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 114.167-20 chr12 24079142 24079553 + 0.666667 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -128315 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 161.333-47 chr3 130327834 130328264 + 0.666667 NA Intergenic Intergenic -17467 NR_022012 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 144.333-96 chr9 110157127 110157510 + 0.666667 NA intron (NM_147150, intron 9 of 9) intron (NM_147150, intron 9 of 9) 31817 NM_001136562 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 138.333-67 chr2 217626184 217626474 + 0.666667 NA intron (NR_026597, intron 1 of 12) MIR3|SINE|MIR 130264 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 126.167-4 chr1 80182479 80182803 + 0.666667 NA Intergenic L1PB|LINE|L1 -353114 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 134.833-30 chr2 180874788 180875250 + 0.666667 NA intron (NR_104324, intron 4 of 4) L1MA3|LINE|L1 -105366 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 158-63 chr9 96720514 96720788 + 0.666667 NA Intergenic Intergenic -5170 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 136-13 chr11 8093392 8093693 + 0.666667 NA non-coding (NR_144485, exon 10 of 10) non-coding (NR_144485, exon 10 of 10) 12180 NM_177972 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 155.5-32 chr2 157448304 157448668 + 0.666667 NA Intergenic Intergenic -4397 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 224.666-10 chr7 11521325 11521945 + 0.666667 NA intron (NM_015204, intron 6 of 26) L1HS|LINE|L1 310563 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 134-110 chr9 75658827 75659125 + 0.666667 NA Intergenic MER45B|DNA|hAT-Tip100 -231668 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 119-63 chr22 35439477 35439700 + 0.666667 NA Intergenic Intergenic 39448 NM_006739 4174 Hs.517582 NM_006739 ENSG00000100297 MCM5 CDC46|MGORS8|P1-CDC46 minichromosome maintenance complex component 5 protein-coding 138.333-110 chr8 124738028 124738393 + 0.666667 NA Intergenic AluY|SINE|Alu -9703 NM_014751 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 226.833-18 chr5 12023266 12023680 + 0.666667 NA Intergenic Intergenic -119027 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 160.667-35 chr18 46378523 46378865 + 0.666667 NA intron (NM_001256758, intron 1 of 5) intron (NM_001256758, intron 1 of 5) 44470 NR_046357 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|Ark2C|RNF111L2 ring finger protein 165 protein-coding 200.833-26 chr4 64533616 64534059 + 0.666667 NA Intergenic L2|LINE|L2 -124377 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 177.333-10 chr10 34256660 34257012 + 0.666667 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -484156 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 138.667-15 chr11 11738987 11739371 + 0.666667 NA Intergenic Intergenic 44043 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 189.333-36 chr3 190435245 190435739 + 0.666667 NA intron (NM_207316, intron 4 of 4) MLT1B|LTR|ERVL-MaLR 14384 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 150.167-14 chr14 50703391 50703709 + 0.666667 NA Intergenic L1MEf|LINE|L1 -35244 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 154.833-41 chr3 14200233 14200751 + 0.666667 NA 3' UTR (NM_014463, exon 4 of 4) 3' UTR (NM_014463, exon 4 of 4) 21675 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 166-7 chr1 232714444 232714745 + 0.666667 NA Intergenic Intergenic -3477 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 162.5 chr1 91480856 91481493 + 0.666667 NA Intergenic Intergenic -19673 NM_001134419 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 167.667-49 chr2 180828392 180828656 + 0.666667 NA intron (NR_104324, intron 4 of 4) intron (NR_104324, intron 4 of 4) 136420 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 121.667-41 chr17 78033748 78033961 + 0.666667 NA intron (NM_018996, intron 3 of 20) intron (NM_018996, intron 3 of 20) 29617 NM_001142640 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 203.667-38 chrX 98180631 98181206 + 0.666667 NA Intergenic Intergenic -616383 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 133-84 chr6 146285671 146285941 + 0.666667 NA intron (NM_001278065, intron 3 of 9) L2a|LINE|L2 256608 NM_001278067 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 140.833-4 chr10 37325740 37326194 + 0.666667 NA intron (NR_104061, intron 3 of 4) LTR9A1|LTR|ERV1 16781 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 187.167-7 chr12 20042207 20042790 + 0.666667 NA intron (NR_040098, intron 2 of 2) intron (NR_040098, intron 2 of 2) 27813 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 127.333-104 chr7 31802427 31802783 + 0.666667 NA intron (NM_001322057, intron 17 of 17) L1MEc|LINE|L1 115390 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 118-40 chr15 61947689 61947918 + 0.666667 NA intron (NM_001018088, intron 42 of 81) intron (NM_001018088, intron 42 of 81) 112644 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 183.333-37 chr3 110303161 110303505 + 0.666667 NA Intergenic MIRb|SINE|MIR 700505 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 235-30 chr6 147274407 147274883 + 0.666667 NA intron (NM_139244, intron 7 of 25) intron (NM_139244, intron 7 of 25) -70031 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 118 chr1 21665173 21665550 + 0.666667 NA intron (NM_001145657, intron 1 of 26) MIRb|SINE|MIR 3996 NM_001330383 5909 Hs.148178 NM_002885 ENSG00000076864 RAP1GAP RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP RAP1 GTPase activating protein protein-coding 154-56 chr4 15781185 15781558 + 0.666667 NA intron (NR_132660, intron 1 of 6) MLT1H1-int|LTR|ERVL-MaLR 3043 NR_132660 952 Hs.479214 NM_001775 ENSG00000004468 CD38 ADPRC 1|ADPRC1 CD38 molecule protein-coding 151.667-25 chr15 96880686 96881253 + 0.666667 NA Intergenic MIR|SINE|MIR 97534 NR_158223 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 136.5-73 chr5 64630663 64630971 + 0.666667 NA Intergenic L2a|LINE|L2 55167 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 144.167-5 chr1 166025343 166025600 + 0.666667 NA Intergenic Intergenic 117550 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 120-115 chr9 95760985 95761336 + 0.666667 NA Intergenic Intergenic -114531 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 144.5-7 chr1 212743260 212743766 + 0.666667 NA intron (NM_015471, intron 4 of 5) intron (NM_015471, intron 4 of 5) -43673 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 165.5-44 chr4 90669194 90669576 + 0.666667 NA intron (NM_207491, intron 6 of 7) intron (NM_207491, intron 6 of 7) 434354 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 168-22 chr16 20008556 20008932 + 0.666667 NA Intergenic L1MA1|LINE|L1 65034 NM_001002911 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 182.5-48 chr9 73694104 73694730 + 0.666667 NA Intergenic Intergenic 542552 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 134-78 chr4 17190336 17190608 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR -4415 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 172-38 chr2 161170783 161171296 + 0.666667 NA intron (NM_001199135, intron 1 of 7) intron (NM_001199135, intron 1 of 7) 10611 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 130.167-40 chr21 27390394 27390641 + 0.666667 NA Intergenic Intergenic -331862 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 142.333-69 chr3 84698070 84698605 + 0.666667 NA intron (NR_033860, intron 11 of 20) intron (NR_033860, intron 11 of 20) 171238 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 209.667-2 chr1 51126794 51127455 + 0.666667 NA intron (NM_001136508, intron 3 of 4) L1ME2|LINE|L1 24896 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 257-7 chr13 58423647 58424146 + 0.666667 NA Intergenic Intergenic -190779 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 125.167-90 chr9 99308286 99308507 + 0.666667 NA Intergenic MER4D1|LTR|ERV1 66861 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 125.667-120 chr8 122764473 122764740 + 0.666667 NA Intergenic L1PA13|LINE|L1 -17049 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 161.667-84 chr8 61352597 61352917 + 0.666667 NA intron (NM_173519, intron 2 of 5) MER2|DNA|TcMar-Tigger 64787 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 165.333-13 chr12 26948215 26948617 + 0.666667 NA intron (NM_015633, intron 1 of 6) L1MB8|LINE|L1 9946 NM_001171887 26127 Hs.591162 NM_015633 ENSG00000111790 FGFR1OP2 HSPC123-like|WIT3.0 FGFR1 oncogene partner 2 protein-coding 122-4 chr1 190003038 190003314 + 0.666667 NA Intergenic Intergenic 472834 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 232.333-36 chr8 114620933 114621530 + 0.666667 NA Intergenic L1PA13|LINE|L1 1046782 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 138-34 chr14 82288272 82288558 + 0.666667 NA Intergenic Intergenic -354217 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 146.167-21 chr16 13602485 13602735 + 0.666667 NA Intergenic L3|LINE|CR1 -317547 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 209.5-24 chr3 47514797 47515346 + 0.666667 NA Intergenic LTR65|LTR|ERV1 -1359 NM_001031703 54859 Hs.311100 NM_017713 ENSG00000163832 ELP6 C3orf75|TMEM103 elongator acetyltransferase complex subunit 6 protein-coding 340.333-12 chr5 20579458 20580398 + 0.666667 NA Intergenic L1MB3|LINE|L1 -4215 NM_001349556 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 141.5-43 chr2 14322507 14322906 + 0.666667 NA intron (NR_103814, intron 1 of 3) intron (NR_103814, intron 1 of 3) 78252 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 198.333-37 chr5 156220773 156221264 + 0.666667 NA Intergenic L3|LINE|CR1 -105739 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 232.167-11 chr14 34031394 34031906 + 0.666667 NA Intergenic Intergenic -80576 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 130-52 chr2 103788000 103788266 + 0.666667 NA Intergenic Intergenic 620199 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 121.5-104 chr8 116107383 116107646 + 0.666667 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 217545 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 175.167-25 chr18 9910722 9911040 + 0.666667 NA Intergenic Intergenic -3135 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 127-65 chr3 72650656 72650918 + 0.666667 NA Intergenic Intergenic 13462 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 189.5-5 chr10 4351321 4351773 + 0.666667 NA Intergenic MER34A1|LTR|ERV1 -32699 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 163.833-23 chr15 27337014 27337314 + 0.666667 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -175845 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 164.167-12 chr11 73776293 73776647 + 0.666667 NA Intergenic AluJo|SINE|Alu -11404 NR_134661 51642 Hs.503239 NM_016055 ENSG00000175581 MRPL48 CGI-118|HSPC290|L48MT|MRP-L48 mitochondrial ribosomal protein L48 protein-coding 120.333-73 chr3 88033548 88033850 + 0.666667 NA Intergenic Intergenic 25297 NM_003663 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 163.333-40 chr2 57747923 57748247 + 0.666667 NA Intergenic Intergenic -159566 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 179.167-48 chr8 94826503 94827059 + 0.666667 NA intron (NR_073445, intron 2 of 27) L1MC5|LINE|L1 3491 NR_073445 55656 Hs.727669 NM_017864 ENSG00000164941 INTS8 C8orf52|INT8 integrator complex subunit 8 protein-coding 131.667-75 chr3 3639391 3639643 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -159914 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 127.667-97 chr8 87052545 87052967 + 0.666667 NA intron (NM_173538, intron 4 of 10) HUERS-P3-int|LTR|ERV1 186341 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 125.5-55 chr3 171786240 171786755 + 0.666667 NA intron (NM_002662, intron 1 of 26) intron (NM_002662, intron 1 of 26) 23986 NM_001130081 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 120.833-74 chr8 127542410 127542637 + 0.666667 NA Intergenic MLT1F|LTR|ERVL-MaLR -60384 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 140.5-52 chr4 64982306 64982740 + 0.666667 NA intron (NR_033976, intron 1 of 6) Tigger1|DNA|TcMar-Tigger 21977 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 189.167-11 chr11 134215512 134216137 + 0.666667 NA intron (NM_015261, intron 3 of 34) L1MEc|LINE|L1 8708 NM_015261 23310 Hs.438550 NM_015261 ENSG00000151503 NCAPD3 CAP-D3|CAPD3|MCPH22|hCAP-D3|hHCP-6|hcp-6 non-SMC condensin II complex subunit D3 protein-coding 124-63 chr20 63675963 63676281 + 0.666667 NA intron (NR_037882, intron 10 of 37) AluJb|SINE|Alu 18312 NM_001283009 51750 Hs.745057 NM_016434 ENSG00000258366 RTEL1 C20orf41|DKCA4|DKCB5|NHL|PFBMFT3|RTEL regulator of telomere elongation helicase 1 protein-coding 155.333-28 chr14 61965923 61966537 + 0.666667 NA intron (NM_001367663, intron 1 of 7) intron (NM_001367663, intron 1 of 7) 38535 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 156.667-23 chr11 95432186 95432506 + 0.666667 NA Intergenic L2b|LINE|L2 -199871 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 210.667-36 chr3 121722812 121723252 + 0.666667 NA intron (NM_001256486, intron 5 of 21) HAL1M8|LINE|L1 26709 NM_001256486 2804 Hs.213389 NM_004487 ENSG00000173230 GOLGB1 GCP|GCP372|GOLIM1 golgin B1 protein-coding 178.5-65 chr6 61726454 61726837 + 0.666667 NA intron (NR_146872, intron 7 of 9) L1PA11|LINE|L1 152515 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 177.833-38 chr6 36355054 36355478 + 0.666667 NA intron (NM_001207035, intron 7 of 7) L1MB7|LINE|L1 -18378 NM_001010903 389384 Hs.162104 NM_001010903 ENSG00000189325 BNIP5 C6orf222 BCL2 interacting protein 5 protein-coding 167.833-38 chr3 121229193 121229754 + 0.666667 NA intron (NR_145516, intron 12 of 28) MER101-int|LTR|ERV1 179833 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 296 chr1 97125898 97126546 + 0.666667 NA intron (NM_000110, intron 20 of 22) intron (NM_000110, intron 20 of 22) 30299 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 186.667-37 chr2 80111888 80112273 + 0.666667 NA intron (NM_001282598, intron 7 of 17) L2a|LINE|L2 192672 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 114.5-94 chr8 89395957 89396241 + 0.666667 NA Intergenic Intergenic 361612 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 184.167-7 chr10 52397015 52397410 + 0.666667 NA Intergenic Intergenic 58060 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 183.167-8 chr10 85695709 85696007 + 0.666667 NA intron (NM_017551, intron 12 of 15) intron (NM_017551, intron 12 of 15) 118127 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 170.333-29 chr15 96044963 96045299 + 0.666667 NA Intergenic AluSz|SINE|Alu 82710 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 122.333-28 chr13 41302886 41303176 + 0.666667 NA intron (NM_001354073, intron 1 of 14) intron (NM_001354073, intron 1 of 14) -8236 NM_018527 79612 Hs.512914 NM_018527 ENSG00000172766 NAA16 NARG1L N(alpha)-acetyltransferase 16, NatA auxiliary subunit protein-coding 242.333-12 chr22 27450861 27451236 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 140397 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 151 chr1 80677940 80678334 + 0.666667 NA Intergenic L2a|LINE|L2 36850 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 257-14 chr6 43751529 43752100 + 0.666667 NA Intergenic AluSx|SINE|Alu -18395 NM_001171627 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 118.667-96 chr5 147120648 147120865 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -39236 NM_001271900 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 156.833-9 chr10 72975347 72975699 + 0.666667 NA Intergenic L1MA5A|LINE|L1 -20717 NM_032562 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 113.667-3 chr1 99806246 99806529 + 0.666667 NA Intergenic SSU-rRNA_Hsa|rRNA|rRNA -39752 NM_001361041 391059 Hs.454779 NM_001013660 ENSG00000156869 FRRS1 SDFR2|SDR2 ferric chelate reductase 1 protein-coding 133.833-57 chr4 121231303 121231583 + 0.666667 NA Intergenic Intergenic -3960 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 113.5-43 chr18 43538331 43538685 + 0.666667 NA Intergenic Intergenic -261018 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 131.167-83 chr8 135667268 135667616 + 0.666667 NA Intergenic Intergenic 209986 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 210.5-8 chr12 754402 755238 + 0.666667 NA intron (NM_001184985, intron 1 of 27) intron (NM_001184985, intron 1 of 27) 1897 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 173-22 chr16 61185944 61186418 + 0.666667 NA Intergenic L1ME2z|LINE|L1 -130415 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 114.667-129 chr8 125780190 125780401 + 0.666667 NA Intergenic Intergenic 170902 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 149.5-14 chr11 8868652 8868944 + 0.666667 NA intron (NM_005418, intron 2 of 22) intron (NM_005418, intron 2 of 22) 42153 NM_005418 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 250.5-10 chr2 85604392 85604779 + 0.666667 NA TTS (NM_001013649) TTS (NM_001013649) 1724 NR_046347 10713 Hs.654745 NM_006590 ENSG00000168883 USP39 65K|CGI-21|HSPC332|SAD1|SNRNP65 ubiquitin specific peptidase 39 protein-coding 178.667-19 chr17 28622740 28623107 + 0.666667 NA intron (NM_001363826, intron 25 of 37) AluSg|SINE|Alu -8738 NM_001174103 124923 Hs.729077 NM_144610 ENSG00000167524 RSKR SGK494 ribosomal protein S6 kinase related protein-coding 158.5-77 chr7 46355005 46355456 + 0.666667 NA Intergenic L2|LINE|L2 341892 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 131.333-22 chr13 24150845 24151333 + 0.666667 NA intron (NM_001286792, intron 3 of 14) MIRb|SINE|MIR -9631 NM_001166271 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 168.834-8 chr8 121245023 121245534 + 0.666667 NA Intergenic Intergenic -394068 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 118.667-51 chr19 43454950 43455204 + 0.666667 NA Intergenic AluSx1|SINE|Alu 10531 NM_014400 27076 Hs.631594 NM_014400 ENSG00000124466 LYPD3 C4.4A LY6/PLAUR domain containing 3 protein-coding 162.5-64 chr6 61710191 61710610 + 0.666667 NA intron (NR_146872, intron 7 of 9) intron (NR_146872, intron 7 of 9) 136270 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 133.333-34 chr14 33590934 33591169 + 0.666667 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) -117886 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 267.666 chr21 26449303 26450072 + 0.666667 NA intron (NR_135515, intron 1 of 3) intron (NR_135515, intron 1 of 3) 43744 NR_135515 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 184.833-17 chr20 47253779 47254377 + 0.666667 NA intron (NM_001281784, intron 11 of 20) intron (NM_001281784, intron 11 of 20) -64424 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 151.667-18 chr12 57745717 57746121 + 0.666667 NA intron (NM_001330169, intron 2 of 5) intron (NM_001330169, intron 2 of 5) 880 NM_001330168 6302 Hs.632708 NM_005981 ENSG00000135452 TSPAN31 SAS tetraspanin 31 protein-coding 143.833-25 chr22 30988947 30989257 + 0.666667 NA Intergenic Intergenic 19891 NR_110493 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 168-68 chr6 142005961 142006266 + 0.666667 NA Intergenic Intergenic 82686 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 145.833-65 chr5 55427177 55427571 + 0.666667 NA intron (NR_103485, intron 5 of 6) intron (NR_103485, intron 5 of 6) 81552 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 174.333-47 chr5 101737200 101737547 + 0.666667 NA Intergenic L1ME4b|LINE|L1 558911 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 171.667-73 chr6 134494527 134494849 + 0.666667 NA intron (NR_038219, intron 4 of 4) L1ME2|LINE|L1 -15791 NR_125852 101928231 Hs.634168 NR_125852 CT69 - cancer/testis associated transcript 69 ncRNA 135.667-11 chr1 236655155 236655517 + 0.666667 NA Intergenic Intergenic -31118 NM_001278344 88 Hs.498178 NM_001103 ENSG00000077522 ACTN2 CMD1AA|CMH23 actinin alpha 2 protein-coding 142-30 chr14 52446515 52446865 + 0.666667 NA intron (NM_001160047, intron 18 of 20) L1MA3|LINE|L1 105815 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 165.167-26 chr2 132577591 132577994 + 0.666667 NA intron (NM_001508, intron 1 of 1) L1MD1|LINE|L1 92413 NM_001321234 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 207.833-9 chr12 39687179 39687690 + 0.666667 NA intron (NM_001031748, intron 10 of 12) MSTA|LTR|ERVL-MaLR 61251 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 130-67 chr22 47749311 47749707 + 0.666667 NA intron (NR_122046, intron 8 of 8) L2|LINE|L2 117835 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 154.333-58 chr5 43876356 43876653 + 0.666667 NA Intergenic Intergenic -273274 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 168-57 chr5 98511415 98511856 + 0.666667 NA Intergenic Intergenic -256997 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 168.333-8 chr11 124035877 124036210 + 0.666667 NA Intergenic L1MD2|LINE|L1 2958 NM_001004463 390265 Hs.553761 NM_001004463 ENSG00000182634 OR10G7 OR11-283 olfactory receptor family 10 subfamily G member 7 protein-coding 212-11 chr15 65475632 65476038 + 0.666667 NA intron (NR_135485, intron 11 of 20) AluJb|SINE|Alu 41439 NM_197960 54878 Hs.458609 NM_017743 ENSG00000074603 DPP8 DP8|DPRP-1|DPRP1|MST097|MSTP097|MSTP135|MSTP141 dipeptidyl peptidase 8 protein-coding 171.667-7 chr1 224618846 224619156 + 0.666667 NA intron (NM_152495, intron 1 of 5) intron (NM_152495, intron 1 of 5) 2684 NR_136287 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 202.333-24 chr2 163335105 163335617 + 0.666667 NA Intergenic Intergenic 400647 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 175.5-46 chr4 89951699 89952059 + 0.666667 NA intron (NM_001371403, intron 8 of 8) intron (NM_001371403, intron 8 of 8) 57025 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 177.667-40 chr2 133059691 133060118 + 0.666667 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 144347 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 243.833-8 chr13 20877201 20877890 + 0.666667 NA intron (NM_022459, intron 1 of 22) MLT1J|LTR|ERVL-MaLR 25229 NM_022459 64328 Hs.507452 NM_022459 ENSG00000132953 XPO4 exp4 exportin 4 protein-coding 152.667-2 chr1 50820516 50820872 + 0.666667 NA intron (NM_007051, intron 2 of 18) L1MA9|LINE|L1 139573 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 254-5 chr14 46319704 46320420 + 0.666667 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -151297 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 287.667-5 chr18 5062469 5063129 + 0.666667 NA Intergenic MLT1A|LTR|ERVL-MaLR -18383 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 154.333-11 chr10 88665263 88665597 + 0.666667 NA intron (NM_004190, intron 1 of 9) intron (NM_004190, intron 1 of 9) 988 NM_001198830 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 142.667-88 chr6 122111492 122111899 + 0.666667 NA Intergenic Intergenic -287856 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 177.667-69 chr8 69049614 69049956 + 0.666667 NA intron (NR_039986, intron 2 of 4) Tigger1|DNA|TcMar-Tigger 54405 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 131.667-111 chr6 40853004 40853300 + 0.666667 NA Intergenic Intergenic 170128 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 173.5-6 chr1 238268777 238269211 + 0.666667 NA Intergenic AluSc|SINE|Alu 217023 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 302-12 chr12 29247266 29248020 + 0.666667 NA intron (NM_001271784, intron 1 of 10) intron (NM_001271784, intron 1 of 10) 23977 NM_018099 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 233.833-5 chr15 60249189 60249688 + 0.666667 NA Intergenic L1M4|LINE|L1 148548 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 147-29 chr2 24125681 24126107 + 0.666667 NA intron (NM_001145710, intron 2 of 10) L1ME1|LINE|L1 2425 NM_001145710 375190 Hs.710370 NM_198553 ENSG00000219626 FAM228B - family with sequence similarity 228 member B protein-coding 192-30 chr3 141507121 141507766 + 0.666667 NA intron (NM_006506, intron 1 of 23) LTR67B|LTR|ERVL 20416 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 132-33 chr15 100019442 100019703 + 0.666667 NA intron (NM_139057, intron 18 of 21) intron (NM_139057, intron 18 of 21) 212549 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 146.167-34 chr2 122930610 122930872 + 0.666667 NA Intergenic L1MC|LINE|L1 142740 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 130.667-62 chr4 35811168 35811768 + 0.666667 NA Intergenic Intergenic 432471 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 172.833-30 chr22 36954452 36954829 + 0.666667 NA Intergenic Intergenic -10608 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 269.667-18 chr9 119213232 119213936 + 0.666667 NA intron (NM_014618, intron 6 of 7) (CA)n|Simple_repeat|Simple_repeat 155851 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 149.333-106 chr9 129065522 129065872 + 0.666667 NA intron (NR_138423, intron 12 of 16) L1ME3D|LINE|L1 -15414 NM_001135917 57171 Hs.21701 NM_020438 ENSG00000167130 DOLPP1 LSFR2 dolichyldiphosphatase 1 protein-coding 279.5-14 chr7 146102017 146102560 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR -671983 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 135-56 chr3 39928161 39928415 + 0.666667 NA intron (NM_001284424, intron 2 of 15) L1MDa|LINE|L1 118628 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 114.167-50 chr2 150002835 150003082 + 0.666667 NA Intergenic Intergenic -143767 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 126.333-74 chr3 106840357 106840586 + 0.666667 NA Intergenic Intergenic 400167 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 123.5-26 chr14 48822074 48822333 + 0.666667 NA Intergenic L1PA16|LINE|L1 764177 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 193-38 chr5 135258184 135258595 + 0.666667 NA intron (NR_161235, intron 3 of 5) L1ME2|LINE|L1 -10212 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 136.167-28 chr17 62854864 62855425 + 0.666667 NA Intergenic Intergenic 46642 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 159.167-63 chr8 15088328 15088724 + 0.666667 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 149905 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 154-84 chr8 136174604 136174922 + 0.666667 NA Intergenic L2|LINE|L2 -356035 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 129-57 chr3 120467738 120468026 + 0.666667 NA Intergenic Intergenic -16890 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 195-39 chr5 28370208 28370684 + 0.666667 NA Intergenic Intergenic -82781 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 126.667-24 chr15 83923911 83924199 + 0.666667 NA intron (NM_207517, intron 17 of 29) intron (NM_207517, intron 17 of 29) -156132 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 214-7 chr10 115811445 115811861 + 0.666667 NA intron (NM_207303, intron 27 of 28) L1MEc|LINE|L1 383136 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 117.333-81 chr4 71971075 71971351 + 0.666667 NA Intergenic L1MC4|LINE|L1 -60591 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 173.833-51 chr6 34938045 34938364 + 0.666667 NA intron (NM_015245, intron 1 of 23) intron (NM_015245, intron 1 of 23) 48949 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 172.167-36 chr4 35081007 35081373 + 0.666667 NA Intergenic Intergenic -811443 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 127.833-14 chr12 29356373 29356632 + 0.666667 NA intron (NM_016570, intron 7 of 13) intron (NM_016570, intron 7 of 13) 24670 NM_016570 51290 Hs.339453 NM_016570 ENSG00000087502 ERGIC2 CDA14|Erv41|PTX1|cd002 ERGIC and golgi 2 protein-coding 201-51 chrX 81955253 81955716 + 0.666667 NA Intergenic MSTA|LTR|ERVL-MaLR 753382 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 141.667-19 chr12 54795024 54795419 + 0.666667 NA Intergenic Intergenic -59295 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 137.167-29 chr19 29794021 29794348 + 0.666667 NA Intergenic L1PB1|LINE|L1 -17807 NM_001322261 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 119.333-116 chr8 138148377 138148630 + 0.666667 NA intron (NM_015912, intron 14 of 19) intron (NM_015912, intron 14 of 19) -64958 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 137.667-86 chr6 145759852 145760133 + 0.666667 NA intron (NR_038246, intron 1 of 2) Tigger3b|DNA|TcMar-Tigger -23969 NR_153398 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 148.667-7 chr1 226700776 226701141 + 0.666667 NA intron (NM_002221, intron 2 of 7) intron (NM_002221, intron 2 of 7) -25890 NR_103784 100506443 Hs.664293 NR_103784 ITPKB-IT1 - ITPKB intronic transcript 1 ncRNA 176.667-46 chr3 7692644 7693103 + 0.666667 NA intron (NM_181874, intron 10 of 10) intron (NM_181874, intron 10 of 10) -157589 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 149.167-12 chr12 44370971 44371488 + 0.666667 NA intron (NM_001286211, intron 6 of 6) intron (NM_001286211, intron 6 of 6) 504432 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 191-48 chr5 76280553 76280903 + 0.666667 NA intron (NM_014979, intron 4 of 12) intron (NM_014979, intron 4 of 12) -122557 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 124-94 chr8 65640683 65640980 + 0.666667 NA Intergenic MLT1F2|LTR|ERVL-MaLR -3822 NM_001145839 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 127.667-40 chr2 67565587 67566046 + 0.666667 NA Intergenic Intergenic 168483 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 118-62 chr2 210556284 210556475 + 0.666667 NA promoter-TSS (NM_001875) promoter-TSS (NM_001875) -220 NM_001875 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 202.833-29 chr8 42507694 42508102 + 0.666667 NA intron (NM_006749, intron 1 of 10) AluSx|SINE|Alu -6667 NM_001257180 6575 Hs.653173 NM_006749 ENSG00000168575 SLC20A2 GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 solute carrier family 20 member 2 protein-coding 151-41 chr21 32228564 32228984 + 0.666667 NA Intergenic L1MA9|LINE|L1 50275 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 135.167-18 chr11 93399999 93400292 + 0.666667 NA intron (NM_181645, intron 11 of 13) L1MC|LINE|L1 69428 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 146.5-80 chr7 55301986 55302288 + 0.666667 NA Intergenic MER49|LTR|ERV1 -46502 NR_110426 102725541 Hs.590524 NR_110426 ELDR Fabl|LINC01156 EGFR long non-coding downstream RNA ncRNA 223.833-10 chr10 82402787 82403264 + 0.666667 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -170105 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 133.5-11 chr10 30893065 30893331 + 0.666667 NA intron (NM_001143766, intron 5 of 7) intron (NM_001143766, intron 5 of 7) 106319 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 138-49 chr2 16890188 16890498 + 0.666667 NA Intergenic Charlie3|DNA|hAT-Charlie -224509 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 125.833-97 chr8 138671327 138671538 + 0.666667 NA intron (NM_152888, intron 41 of 64) Tigger2b_Pri|DNA|TcMar-Tigger -173702 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 195.667-26 chr21 29553820 29554312 + 0.666667 NA intron (NM_000830, intron 16 of 16) intron (NM_000830, intron 16 of 16) -41974 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 153.167-26 chr2 113926747 113927030 + 0.666667 NA intron (NM_005721, intron 3 of 11) intron (NM_005721, intron 3 of 11) -35896 NR_110174 101060091 Hs.741753 NR_110174 ACTR3-AS1 - ACTR3 antisense RNA 1 ncRNA 116.667-4 chr1 113510751 113511071 + 0.666667 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 120396 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 138.667-76 chr5 54466594 54466909 + 0.666667 NA Intergenic L1MEi|LINE|L1 11052 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 143.667-32 chr12 122528850 122529158 + 0.666667 NA intron (NM_014708, intron 1 of 63) AluSq|SINE|Alu 1755 NM_014708 9735 Hs.300559 NM_014708 ENSG00000184445 KNTC1 ROD kinetochore associated 1 protein-coding 234.667-32 chr7 18141406 18141853 + 0.666667 NA intron (NM_001204144, intron 1 of 12) intron (NM_001204144, intron 1 of 12) -14320 NR_031635 100302140 NR_031635 ENSG00000221393 MIR1302-6 MIRN1302-6|hsa-mir-1302-6 microRNA 1302-6 ncRNA 202.667-32 chr3 158666849 158667425 + 0.666667 NA intron (NM_020169, intron 4 of 5) intron (NM_020169, intron 4 of 5) 5511 NM_020169 56925 Hs.478067 NM_020169 ENSG00000079257 LXN ECI|TCI latexin protein-coding 129.833-67 chr7 117073119 117073398 + 0.666667 NA intron (NR_109980, intron 3 of 4) intron (NR_109980, intron 3 of 4) 17523 NR_109980 93654 Hs.628891 NR_002331 ENSG00000226367 ST7-AS2 ST7AS2|ST7OT2 ST7 antisense RNA 2 ncRNA 138.667-99 chr8 11135275 11135521 + 0.666667 NA intron (NR_138154, intron 1 of 2) intron (NR_138154, intron 1 of 2) 65968 NR_138152 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 191.167-35 chr8 112110182 112110503 + 0.666667 NA Intergenic L2b|LINE|L2 -533151 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 117.667-4 chr1 94902264 94902486 + 0.666667 NA intron (NM_001839, intron 3 of 6) intron (NM_001839, intron 3 of 6) 23433 NM_001286056 1266 Hs.483454 NM_001839 ENSG00000117519 CNN3 - calponin 3 protein-coding 177-14 chr13 84051901 84052409 + 0.666667 NA Intergenic Intergenic -88447 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 197.333-6 chr11 41889821 41890248 + 0.666667 NA Intergenic Intergenic 175466 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 213.5-29 chr4 52728386 52728916 + 0.666667 NA Intergenic MLT1J|LTR|ERVL-MaLR 15402 NR_003016 677810 Hs.635034 NR_003016 ENSG00000212588 SNORA26 HBI-6 small nucleolar RNA, H/ACA box 26 snoRNA 116.834-7 chr2 151920199 151920773 + 0.666667 NA intron (NM_000726, intron 2 of 13) AluJr|SINE|Alu 51566 NM_001330118 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 284.333 chr13 48873105 48873564 + 0.666667 NA Intergenic Intergenic -102578 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 198.5-22 chr2 48939069 48939492 + 0.666667 NA Intergenic Intergenic -120323 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 117.833-61 chr5 21205681 21206057 + 0.666667 NA Intergenic Intergenic -253611 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 148.667-18 chr13 39839103 39839472 + 0.666667 NA Intergenic MIRb|SINE|MIR -175152 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 179.333-19 chr14 54226575 54226921 + 0.666667 NA Intergenic Intergenic -170120 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 201.5-12 chr18 13202350 13202733 + 0.666667 NA Intergenic L1ME3Cz|LINE|L1 -16219 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 196.333-19 chr2 48184489 48184896 + 0.666667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -129990 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 188-38 chr3 50216520 50216851 + 0.666667 NA intron (NM_006841, intron 7 of 15) intron (NM_006841, intron 7 of 15) -10383 NM_001282620 2771 Hs.77269 NM_002070 ENSG00000114353 GNAI2 GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1 G protein subunit alpha i2 protein-coding 122.667-69 chr3 142401373 142401859 + 0.666667 NA intron (NM_019001, intron 18 of 41) AluSg4|SINE|Alu 46421 NM_019001 54464 Hs.435103 NM_019001 ENSG00000114127 XRN1 SEP1 5'-3' exoribonuclease 1 protein-coding 242.333-17 chr5 124006965 124007387 + 0.666667 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 431344 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 119.5-89 chr6 73636363 73636555 + 0.666667 NA intron (NM_012434, intron 5 of 10) intron (NM_012434, intron 5 of 10) 17533 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 131.333-50 chr2 125110154 125110395 + 0.666667 NA Intergenic Intergenic 1007711 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 170.167-21 chr15 75838671 75839296 + 0.666667 NA Intergenic Intergenic -4464 NM_001284382 92912 Hs.23033 NM_173469 ENSG00000140367 UBE2Q2 - ubiquitin conjugating enzyme E2 Q2 protein-coding 129-26 chr12 20635471 20635747 + 0.666667 NA intron (NM_000921, intron 8 of 15) AluSx3|SINE|Alu -59746 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 133.5-83 chr8 129784153 129784552 + 0.666667 NA intron (NM_031415, intron 1 of 13) L1MA2|LINE|L1 2272 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 116-16 chr12 22804112 22804396 + 0.666667 NA Intergenic LTR1C|LTR|ERV1 179083 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 122.333-87 chr4 123491445 123491753 + 0.666667 NA Intergenic Intergenic 92059 NM_005841 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 200-36 chr2 99027357 99027739 + 0.666667 NA intron (NM_001349013, intron 13 of 16) L1MA7|LINE|L1 -91323 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 142.167-43 chr2 189514748 189515202 + 0.666667 NA Intergenic Intergenic 65836 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 165.833-44 chr4 35205206 35205514 + 0.666667 NA Intergenic ERVL-int|LTR|ERVL -935613 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 138.833-34 chr2 13714766 13715223 + 0.666667 NA Intergenic Intergenic 685964 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 121.667-94 chr8 24525665 24525917 + 0.666667 NA intron (NR_125808, intron 1 of 5) intron (NR_125808, intron 1 of 5) -10923 NR_125809 101929315 Hs.125562 NR_125809 ENSG00000253643 LOC101929315 - uncharacterized LOC101929315 ncRNA 126.833-27 chr12 41290577 41291027 + 0.666667 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 102482 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 191-46 chr5 18830493 18831057 + 0.666667 NA Intergenic Intergenic 1023501 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 149.5-67 chr8 118616089 118616457 + 0.666667 NA intron (NR_109794, intron 1 of 4) intron (NR_109794, intron 1 of 4) -4728 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 126.667-63 chr4 39100034 39100400 + 0.666667 NA intron (NM_199039, intron 5 of 9) intron (NM_199039, intron 5 of 9) 37985 NM_199039 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 148-41 chr2 22756604 22757031 + 0.666667 NA Intergenic THE1C|LTR|ERVL-MaLR 220338 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 144-72 chr8 4599166 4599466 + 0.666667 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 395598 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 113.667-66 chr2 80948159 80948419 + 0.666667 NA Intergenic L1PA12|LINE|L1 518657 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 194.167-8 chr11 73859116 73859623 + 0.666667 NA intron (NR_134661, intron 4 of 5) AluJo|SINE|Alu -17330 NM_001267806 80227 Hs.525017 NM_025155 ENSG00000175575 PAAF1 PAAF|Rpn14|WDR71 proteasomal ATPase associated factor 1 protein-coding 154.833-31 chr2 156599060 156599477 + 0.666667 NA Intergenic Intergenic 162889 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 211.5 chr1 83750905 83751474 + 0.666667 NA intron (NR_119375, intron 1 of 2) intron (NR_119375, intron 1 of 2) 109357 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 137.5-83 chr5 119757027 119757471 + 0.666667 NA Intergenic Intergenic 127690 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 243.833 chr1 167847696 167848435 + 0.666667 NA intron (NM_018417, intron 19 of 32) AluSx3|SINE|Alu 66069 NM_001167749 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 183.167-58 chr8 118851637 118852048 + 0.666667 NA Intergenic Intergenic 100043 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 136.167-64 chr5 37236745 37237306 + 0.666667 NA intron (NM_023073, intron 8 of 51) L1PB4|LINE|L1 -12021 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 210.667-11 chr12 18479537 18479927 + 0.666667 NA intron (NM_001288774, intron 18 of 32) intron (NM_001288774, intron 18 of 32) 218192 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 116-70 chr5 14654925 14655137 + 0.666667 NA Intergenic AluJb|SINE|Alu -2649 NR_132980 106635683 NR_132980 SNORD141A - small nucleolar RNA, C/D box 141A snoRNA 136-17 chr12 19494829 19495178 + 0.666667 NA intron (NM_001114176, intron 4 of 8) AluSg7|SINE|Alu 54404 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 142.167-34 chr18 72929464 72929685 + 0.666667 NA Intergenic PRIMA41-int|LTR|ERV1 60534 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 123.667-118 chr9 5805136 5805421 + 0.666667 NA intron (NM_024896, intron 9 of 14) intron (NM_024896, intron 9 of 14) 27839 NM_024896 79956 Hs.591078 NM_024896 ENSG00000099219 ERMP1 FXNA|KIAA1815|bA207C16.3 endoplasmic reticulum metallopeptidase 1 protein-coding 131.667-21 chr11 84233120 84233494 + 0.666667 NA intron (NM_001142700, intron 1 of 19) LTR9A1|LTR|ERV1 39973 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 174.5-45 chr7 4432022 4432591 + 0.666667 NA Intergenic MER44C|DNA|TcMar-Tigger -249989 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 140.667-36 chr16 10455506 10455811 + 0.666667 NA intron (NR_045816, intron 6 of 9) MLT1D-int|LTR|ERVL-MaLR 69597 NR_045816 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 177.333-52 chr5 152170922 152171325 + 0.666667 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 212225 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 162.5-44 chr3 26612984 26613431 + 0.666667 NA Intergenic L2c|LINE|L2 -9599 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 115.167-58 chr2 97700920 97701279 + 0.666667 NA intron (NR_038386, intron 8 of 9) intron (NR_038386, intron 8 of 9) -12469 NM_001079 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 205.5-35 chr5 76987260 76987599 + 0.666667 NA Intergenic Intergenic 34384 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 162.333-25 chr17 71577886 71578276 + 0.666667 NA Intergenic LTR8B|LTR|ERV1 -375902 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 153.333-43 chr20 55112881 55113466 + 0.666667 NA Intergenic Intergenic -309870 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 238.333-25 chr4 151669772 151670468 + 0.666667 NA TTS (NM_004564) TTS (NM_004564) 90887 NM_004564 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 118.667-101 chr6 76444937 76445280 + 0.666667 NA Intergenic L1MA7|LINE|L1 148515 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 212.167-11 chr2 202961099 202961590 + 0.666667 NA exon (NM_001104586, exon 8 of 16) exon (NM_001104586, exon 8 of 16) 49069 NM_001282912 79800 Hs.444982 NM_024744 ENSG00000138380 CARF ALS2CR8|NYD-SP24 calcium responsive transcription factor protein-coding 125-76 chr6 73529214 73529529 + 0.666667 NA Intergenic MIR|SINE|MIR -8339 NM_001402 1915 Hs.535192 NM_001402 ENSG00000156508 EEF1A1 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 171.333-10 chr1 213224765 213225098 + 0.666667 NA intron (NM_001349662, intron 9 of 15) intron (NM_001349662, intron 9 of 15) 173690 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 227.667-19 chr4 37405450 37405985 + 0.666667 NA intron (NM_001144990, intron 3 of 6) intron (NM_001144990, intron 3 of 6) -48208 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 272.167-13 chr14 69575303 69575975 + 0.666667 NA promoter-TSS (NM_001271507) promoter-TSS (NM_001271507) -768 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 133-97 chr8 110807449 110807763 + 0.666667 NA Intergenic Intergenic 219827 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 128.833-74 chr5 106317943 106318258 + 0.666667 NA Intergenic L1PREC2|LINE|L1 692914 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 126.333-76 chr3 168518286 168518668 + 0.666667 NA intron (NR_021485, intron 3 of 15) MamTip3|DNA|hAT-Tip100 -33377 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 261.334-2 chr12 14097665 14098433 + 0.666667 NA Intergenic Intergenic -117693 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 142.333-15 chr10 118117644 118117993 + 0.666667 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -70877 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 123.667-35 chr15 38198042 38198315 + 0.666667 NA Intergenic Intergenic -54658 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 210.667-50 chr7 65304299 65304958 + 0.666667 NA Intergenic PABL_B-int|LTR|ERV1 -69171 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 115.833-45 chr3 44893279 44893730 + 0.666667 NA intron (NM_003241, intron 4 of 13) intron (NM_003241, intron 4 of 13) 18896 NM_003241 7047 Hs.438265 NM_003241 ENSG00000163810 TGM4 TGP|hTGP transglutaminase 4 protein-coding 178.667-42 chr3 104047163 104047476 + 0.666667 NA Intergenic Intergenic -523203 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 141.667-65 chr3 61845609 61846078 + 0.666667 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 284272 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 175.333-19 chr16 28301649 28301994 + 0.666667 NA intron (NM_001024401, intron 1 of 3) MIRb|SINE|MIR 9296 NM_001024401 388228 Hs.97837 NM_001024401 ENSG00000188322 SBK1 SBK SH3 domain binding kinase 1 protein-coding 116-98 chr8 131361777 131362053 + 0.666667 NA Intergenic Intergenic -321006 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 116.667-104 chr8 22882413 22882706 + 0.666667 NA intron (NR_125433, intron 2 of 3) intron (NR_125433, intron 2 of 3) 4587 NR_125433 101929237 Hs.677838 NR_125433 ENSG00000248738 LOC101929237 - uncharacterized LOC101929237 ncRNA 128.833-20 chr11 60877765 60877964 + 0.666667 NA Intergenic Intergenic 10322 NM_207341 22917 Hs.172130 NM_207341 ENSG00000149506 ZP1 HEL163|OOMD|OOMD1 zona pellucida glycoprotein 1 protein-coding 169.333-47 chr3 36033006 36033368 + 0.666667 NA Intergenic Intergenic 288711 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 148.167-4 chr1 112264906 112265231 + 0.666667 NA Intergenic Intergenic -131146 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 188-47 chr5 66632642 66633071 + 0.666667 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) 36463 NM_001290228 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 113.333-86 chr4 174775550 174775872 + 0.666667 NA intron (NM_006529, intron 2 of 9) intron (NM_006529, intron 2 of 9) 53536 NM_006529 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 120.5-7 chr1 219952380 219952764 + 0.666667 NA Intergenic MIRb|SINE|MIR -23921 NR_046437 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 192.667-36 chr3 108472953 108473537 + 0.666667 NA intron (NM_014981, intron 13 of 41) AluSx|SINE|Alu 56077 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 167.5 chr1 68769623 68770032 + 0.666667 NA Intergenic Intergenic -272745 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 174.5-37 chr5 83999145 83999797 + 0.666667 NA intron (NM_001278642, intron 8 of 9) L1M1|LINE|L1 -278616 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 135-36 chr2 68315679 68316018 + 0.666667 NA intron (NM_015463, intron 2 of 2) AluJo|SINE|Alu 4203 NM_015463 25927 Hs.212885 NM_015463 ENSG00000119865 CNRIP1 C2orf32|CRIP1 cannabinoid receptor interacting protein 1 protein-coding 206.667 chr1 83823465 83823871 + 0.666667 NA intron (NR_119374, intron 2 of 2) intron (NR_119374, intron 2 of 2) 36878 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 164.667-25 chr14 68884095 68884369 + 0.666667 NA exon (NM_001130004, exon 14 of 22) exon (NM_001130004, exon 14 of 22) -87989 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 126.333-116 chr9 95315862 95316339 + 0.666667 NA intron (NM_001243744, intron 1 of 13) intron (NM_001243744, intron 1 of 13) 1154 NM_001243743 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 226.167-14 chr2 53201391 53201752 + 0.666667 NA Intergenic Intergenic -498956 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 192.667-11 chr10 120547006 120547597 + 0.666667 NA intron (NM_001030059, intron 5 of 6) intron (NM_001030059, intron 5 of 6) -50648 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 146-28 chr17 59825254 59825562 + 0.666667 NA intron (NM_001329400, intron 8 of 9) (TTTTAA)n|Simple_repeat|Simple_repeat -15858 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 120.5-46 chr18 12053408 12053770 + 0.666667 NA Intergenic Intergenic -40254 NM_001277333 342850 Hs.448906 NM_001277333 ENSG00000181626 ANKRD62 DKFZp779B1634 ankyrin repeat domain 62 protein-coding 119.667-26 chr15 97344195 97344555 + 0.666667 NA Intergenic Intergenic 177436 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 154-40 chr2 138859006 138859295 + 0.666667 NA Intergenic Intergenic -38174 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 197-51 chr8 99192758 99193339 + 0.666667 NA exon (NM_152564, exon 17 of 62) exon (NM_152564, exon 17 of 62) 179782 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 264-14 chr4 165093487 165093998 + 0.666667 NA intron (NM_001100389, intron 3 of 5) intron (NM_001100389, intron 3 of 5) 19118 NM_001100389 201931 Hs.704511 NM_152681 ENSG00000170088 TMEM192 - transmembrane protein 192 protein-coding 195-49 chr8 139365001 139365455 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR 337895 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 240-24 chr3 83861694 83862371 + 0.666667 NA Intergenic AluSz6|SINE|Alu 1007543 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 157-33 chr17 53551769 53552136 + 0.666667 NA Intergenic L2c|LINE|L2 -270975 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 194.667-50 chr5 21035262 21035954 + 0.666667 NA Intergenic L1M5|LINE|L1 -420073 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 204-18 chr2 44705450 44705812 + 0.666667 NA intron (NM_024766, intron 4 of 10) intron (NM_024766, intron 4 of 10) 233257 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 167.333-57 chr5 78206358 78206691 + 0.666667 NA intron (NM_003664, intron 7 of 26) intron (NM_003664, intron 7 of 26) 88174 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 166.667-2 chr1 91906899 91907270 + 0.666667 NA Intergenic (CTTTCT)n|Simple_repeat|Simple_repeat -1082 NM_001195684 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 129.167-71 chr6 145417291 145417705 + 0.666667 NA Intergenic Intergenic 269379 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 166-27 chr16 52434145 52434764 + 0.666667 NA Intergenic Intergenic 112689 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 219.333-21 chr2 59975612 59976056 + 0.666667 NA Intergenic MIRb|SINE|MIR 407202 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 139.167-66 chr8 84352068 84352342 + 0.666667 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -63279 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 178.833-8 chr11 34072062 34072400 + 0.666667 NA intron (NM_005898, intron 4 of 18) intron (NM_005898, intron 4 of 18) 20500 NM_203364 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 140-26 chr14 87612678 87612973 + 0.666667 NA Intergenic Intergenic 42469 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 120.333-122 chr8 140080246 140080657 + 0.666667 NA intron (NM_001160372, intron 17 of 22) MSTB2|LTR|ERVL-MaLR 20084 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 208.333-3 chr1 95786455 95786907 + 0.666667 NA Intergenic Intergenic -205387 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 123-71 chr5 6825589 6825799 + 0.666667 NA intron (NR_146281, intron 1 of 1) L1M5|LINE|L1 2227 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 162-64 chr6 118645122 118645533 + 0.666667 NA intron (NM_001178035, intron 2 of 13) L2a|LINE|L2 6264 NM_001042475 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 211.334-2 chr3 34335640 34336172 + 0.666667 NA Intergenic Intergenic 537276 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 276-17 chr9 34819826 34820462 + 0.666667 NA Intergenic L1MC|LINE|L1 18442 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 134.667-74 chr4 95368413 95368644 + 0.666667 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 180445 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 188-10 chr10 82882016 82882375 + 0.666667 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -649275 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 224.333-36 chr9 28122210 28122673 + 0.666667 NA intron (NM_152570, intron 5 of 6) MIRb|SINE|MIR -548575 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 150.333-52 chr2 20877307 20877718 + 0.666667 NA Intergenic Intergenic -54382 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 187.5-31 chr3 139752902 139753293 + 0.666667 NA Intergenic L1MCa|LINE|L1 -75047 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 163.667-36 chr2 43695952 43696353 + 0.666667 NA intron (NM_172069, intron 6 of 29) intron (NM_172069, intron 6 of 29) -19723 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 177-30 chr19 7569172 7569464 + 0.666667 NA Intergenic AluSx|SINE|Alu -26545 NM_001080429 57662 Hs.17686 NM_020902 ENSG00000076826 CAMSAP3 KIAA1543|NEZHA|PPP1R80 calmodulin regulated spectrin associated protein family member 3 protein-coding 192-22 chr2 48033737 48034070 + 0.666667 NA Intergenic L1MD1|LINE|L1 -128110 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 122.833-19 chr13 34083918 34084135 + 0.666667 NA Intergenic AluJb|SINE|Alu -264017 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 210-8 chr15 53278040 53278558 + 0.666667 NA Intergenic L1PA11|LINE|L1 161934 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 206.667-14 chr12 77990884 77991442 + 0.666667 NA intron (NM_001024383, intron 5 of 39) AluSg|SINE|Alu 160269 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 190.667-31 chr3 45961188 45961651 + 0.666667 NA intron (NM_024513, intron 11 of 17) AluSz6|SINE|Alu 17955 NM_006564 10663 Hs.34526 NM_006564 ENSG00000172215 CXCR6 BONZO|CD186|STRL33|TYMSTR C-X-C motif chemokine receptor 6 protein-coding 216-7 chr14 63915367 63915699 + 0.666667 NA intron (NM_015180, intron 2 of 114) intron (NM_015180, intron 2 of 114) 62529 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 165.667-60 chr5 144228237 144228858 + 0.666667 NA intron (NM_001370487, intron 2 of 2) L2-3_Crp|LINE|L2 23156 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 182-49 chr6 168506875 168507381 + 0.666667 NA intron (NM_001166412, intron 1 of 12) intron (NM_001166412, intron 1 of 12) 65944 NM_001166412 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 203.333-40 chr5 59733243 59733630 + 0.666667 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -29733 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 190.667-54 chr7 81038671 81039287 + 0.666667 NA Intergenic MLT1J|LTR|ERVL-MaLR -116590 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 192.167-39 chr7 29998506 29998979 + 0.666667 NA Intergenic L1MEc|LINE|L1 -8453 NM_001145514 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 133.167-35 chr2 233504532 233504997 + 0.666667 NA intron (NM_001365479, intron 21 of 31) L1MA6|LINE|L1 60809 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 231.667-15 chr16 52536770 52537353 + 0.666667 NA intron (NM_001146188, intron 1 of 7) (CT)n|Simple_repeat|Simple_repeat 10082 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 202-24 chr3 31358165 31358769 + 0.666667 NA Intergenic AluSz6|SINE|Alu -174458 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 115.167-70 chr3 97258556 97258943 + 0.666667 NA intron (NM_001080448, intron 5 of 17) MIR3|SINE|MIR -180858 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 147-39 chr2 151440025 151440679 + 0.666667 NA intron (NM_001177665, intron 14 of 33) intron (NM_001177665, intron 14 of 33) 30450 NM_001177665 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 131.667-94 chr4 95598838 95599150 + 0.666667 NA Intergenic Intergenic -50021 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 115.5-22 chr11 36147457 36147789 + 0.666667 NA intron (NM_001304263, intron 3 of 4) intron (NM_001304263, intron 3 of 4) -69722 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 117.667-58 chr2 9919568 9919796 + 0.666667 NA exon (NM_005680, exon 14 of 15) exon (NM_005680, exon 14 of 15) -32011 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 117.167-59 chr3 24184489 24185017 + 0.666667 NA intron (NR_121667, intron 3 of 3) intron (NR_121667, intron 3 of 3) 33429 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 135.5-12 chr10 20143302 20143659 + 0.666667 NA intron (NM_032812, intron 5 of 13) intron (NM_032812, intron 5 of 13) 327048 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 121.333-63 chr3 65481825 65482292 + 0.666667 NA intron (NM_001365904, intron 3 of 24) MADE2|DNA|TcMar-Mariner -411758 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 129.667-107 chr8 121946554 121946864 + 0.666667 NA Intergenic Intergenic -305269 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 170.333-53 chr4 64302958 64303368 + 0.666667 NA intron (NM_001363796, intron 7 of 11) intron (NM_001363796, intron 7 of 11) 106287 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 166.333-30 chr2 6735860 6736281 + 0.666667 NA intron (NR_038369, intron 2 of 5) intron (NR_038369, intron 2 of 5) 34241 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 130.167-11 chr11 69156656 69156929 + 0.666667 NA intron (NR_161183, intron 1 of 1) MIRb|SINE|MIR 857 NR_161183 107984345 NM_001369201 SMIM38 - small integral membrane protein 38 protein-coding 132.667-22 chr12 68345808 68346136 + 0.666667 NA Intergenic L2|LINE|L2 -13558 NM_001354970 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 239.333 chr1 109023306 109023875 + 0.666667 NA intron (NM_014969, intron 1 of 14) intron (NM_014969, intron 1 of 14) 18638 NM_001142550 22911 Hs.570055 NM_014969 ENSG00000085433 WDR47 - WD repeat domain 47 protein-coding 292-12 chr4 176403548 176404401 + 0.666667 NA Intergenic L1M4|LINE|L1 84008 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 127.167-60 chr3 131484130 131484487 + 0.666667 NA intron (NM_007208, intron 6 of 9) MER5A|DNA|hAT-Charlie -5075 NR_002985 677836 Hs.735762 NR_002985 SNORA58 ACA58|SNORA58B small nucleolar RNA, H/ACA box 58 snoRNA 151.5-22 chr14 55962340 55962909 + 0.666667 NA Intergenic MLT1A1|LTR|ERVL-MaLR -155787 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 167.5-22 chr14 20067087 20067604 + 0.666667 NA Intergenic L1PA15|LINE|L1 7300 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 212-4 chr10 100082919 100083335 + 0.666667 NA Intergenic L1MB7|LINE|L1 -1258 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 167.167-23 chr12 128937229 128937742 + 0.666667 NA intron (NM_001366886, intron 8 of 11) intron (NM_001366886, intron 8 of 11) 84007 NM_001366889 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 158.667-17 chr11 105746908 105747213 + 0.666667 NA intron (NR_046356, intron 2 of 16) L1MEd|LINE|L1 136354 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 196.667-4 chr1 158147470 158147877 + 0.666667 NA Intergenic LTR78B|LTR|ERV1 -7033 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 225.167-15 chr2 210271338 210271744 + 0.666667 NA Intergenic MER121|DNA|hAT? 32074 NM_079422 4632 Hs.187338 NM_079420 ENSG00000168530 MYL1 MLC1F|MLC3F|MYOFTA myosin light chain 1 protein-coding 134-103 chr8 79893477 79893801 + 0.666667 NA Intergenic Intergenic -21902 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 142.667-33 chr14 76462939 76463415 + 0.666667 NA intron (NM_004452, intron 5 of 10) intron (NM_004452, intron 5 of 10) 91830 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 154.167-36 chr20 38465867 38466273 + 0.666667 NA Intergenic Intergenic -6773 NM_001282917 57148 Hs.598850 NM_020336 ENSG00000170471 RALGAPB KIAA1219|RalGAPbeta Ral GTPase activating protein non-catalytic beta subunit protein-coding 188.5-23 chr17 69951231 69951785 + 0.666667 NA Intergenic Intergenic -10199 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 220-4 chr11 47315498 47316182 + 0.666667 NA intron (NM_130476, intron 27 of 32) AluSz|SINE|Alu 36862 NM_000256 4607 Hs.524906 NM_000256 ENSG00000134571 MYBPC3 CMD1MM|CMH4|FHC|LVNC10|MYBP-C myosin binding protein C, cardiac protein-coding 179.167-22 chr19 2504248 2504783 + 0.666667 NA Intergenic Intergenic 28388 NM_015675 4616 Hs.110571 NM_015675 ENSG00000099860 GADD45B GADD45BETA|MYD118 growth arrest and DNA damage inducible beta protein-coding 162-30 chr18 5241550 5241964 + 0.666667 NA non-coding (NR_015389, exon 2 of 3) non-coding (NR_015389, exon 2 of 3) 3657 NR_015389 339290 Hs.643553 NR_015389 ENSG00000263753 LINC00667 - long intergenic non-protein coding RNA 667 ncRNA 166-31 chr18 72559174 72559563 + 0.666667 NA Intergenic Intergenic -15026 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 177.5-44 chr2 203726681 203727020 + 0.666667 NA exon (NM_006139, exon 2 of 4) exon (NM_006139, exon 2 of 4) 20211 NM_006139 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 134.833-73 chr9 133482828 133483132 + 0.666667 NA Intergenic AluSg|SINE|Alu -3881 NM_001145099 11182 Hs.244378 NM_017585 ENSG00000160326 SLC2A6 GLUT6|GLUT9|HSA011372 solute carrier family 2 member 6 protein-coding 116.833-3 chr1 201747369 201747822 + 0.666667 NA intron (NM_001167738, intron 1 of 26) intron (NM_001167738, intron 1 of 26) 7695 NM_001167738 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 130.667-97 chr8 122401250 122401583 + 0.666667 NA Intergenic Intergenic 167228 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 132.667-26 chr13 29455453 29455802 + 0.666667 NA intron (NM_015233, intron 2 of 8) L1MEf|LINE|L1 26967 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 136.333-80 chr6 9707138 9707388 + 0.666667 NA Intergenic Intergenic -697239 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 182-11 chr11 71314445 71314897 + 0.666667 NA Intergenic L1MCa|LINE|L1 -89875 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 281-21 chr8 58471368 58471871 + 0.666667 NA Intergenic Intergenic 28544 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 155.5-36 chr3 96465665 96466005 + 0.666667 NA Intergenic Intergenic 105871 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 138.333-58 chr2 51235862 51236246 + 0.666667 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 203453 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 136.834-5 chr2 206955604 206956130 + 0.666667 NA intron (NM_173077, intron 3 of 8) intron (NM_173077, intron 3 of 8) 16349 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 127-17 chr11 91692125 91692351 + 0.666667 NA Intergenic Intergenic -532796 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 138.167-80 chr9 70815271 70815544 + 0.666667 NA intron (NM_001366152, intron 6 of 27) L1ME4b|LINE|L1 -5323 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 130.833-56 chr5 25268834 25269280 + 0.666667 NA intron (NR_136209, intron 1 of 3) L1PA13|LINE|L1 78104 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 160.167-19 chr16 2252300 2252624 + 0.666667 NA promoter-TSS (NM_001919) promoter-TSS (NM_001919) -875 NM_001919 1632 Hs.403436 NM_001919 ENSG00000167969 ECI1 DCI enoyl-CoA delta isomerase 1 protein-coding 234.667-12 chr13 24503820 24504487 + 0.666667 NA intron (NM_006437, intron 1 of 33) intron (NM_006437, intron 1 of 33) 8625 NM_006437 143 Hs.744855 NM_006437 ENSG00000102699 PARP4 ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193 poly(ADP-ribose) polymerase family member 4 protein-coding 141.333-32 chr14 57673111 57673480 + 0.666667 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -179438 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 155.667-76 chr7 82932571 82932871 + 0.666667 NA intron (NM_033026, intron 6 of 24) intron (NM_033026, intron 6 of 24) 230163 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 121.5-93 chr6 129907426 129907712 + 0.666667 NA Intergenic MLT2F|LTR|ERVL -46254 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 204.667-4 chr1 225590714 225591089 + 0.666667 NA intron (NM_001008493, intron 1 of 14) intron (NM_001008493, intron 1 of 14) 62222 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 172.833-19 chr15 57242955 57243370 + 0.666667 NA intron (NM_207038, intron 12 of 19) intron (NM_207038, intron 12 of 19) 23732 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 209.333-10 chr15 97162766 97163139 + 0.666667 NA Intergenic Intergenic 358859 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 142-59 chr22 25575009 25575323 + 0.666667 NA intron (NM_001362778, intron 1 of 19) intron (NM_001362778, intron 1 of 19) 10491 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 135 chr1 28585031 28585330 + 0.666667 NA Intergenic AluSp|SINE|Alu -2197 NR_146382 85028 Hs.632377 NR_024127 ENSG00000197989 SNHG12 ASLNC04080|C1orf79|LINC00100|NCRNA00100|PNAS-123 small nucleolar RNA host gene 12 ncRNA 142-97 chr9 68907075 68907420 + 0.666667 NA intron (NM_003558, intron 8 of 15) intron (NM_003558, intron 8 of 15) 68594 NR_110647 101927069 Hs.663405 NR_110647 LOC101927069 - uncharacterized LOC101927069 ncRNA 203.667-15 chr2 11292053 11292513 + 0.666667 NA intron (NM_001321643, intron 1 of 32) intron (NM_001321643, intron 1 of 32) 52353 NM_004850 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 191.5-17 chr13 44570912 44571429 + 0.666667 NA intron (NM_183422, intron 1 of 2) L2c|LINE|L2 -4726 NR_038381 641467 Hs.624196 NR_038381 ENSG00000278156 TSC22D1-AS1 - TSC22D1 antisense RNA 1 ncRNA 130.667-88 chr7 51503993 51504337 + 0.666667 NA Intergenic L1ME3Cz|LINE|L1 -110909 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 176-41 chr7 28707227 28707703 + 0.666667 NA intron (NM_001011666, intron 1 of 6) intron (NM_001011666, intron 1 of 6) 21332 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 141.5-20 chr12 32811794 32812046 + 0.666667 NA intron (NM_001005242, intron 9 of 12) Tigger4|DNA|TcMar-Tigger -56023 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 136-89 chr9 84941029 84941408 + 0.666667 NA intron (NM_001018064, intron 14 of 17) intron (NM_001018064, intron 14 of 17) 235317 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 233.167-28 chr6 40745959 40746408 + 0.666667 NA Intergenic Intergenic -158819 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 165.667-49 chr4 72301149 72301525 + 0.666667 NA intron (NM_014243, intron 17 of 21) L1ME4b|LINE|L1 262205 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 250.667-9 chr4 85457360 85458254 + 0.666667 NA Intergenic Intergenic -17343 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 126.167-6 chr1 168911119 168911380 + 0.666667 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 124308 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 175-3 chr1 90265043 90265384 + 0.666667 NA Intergenic L1PA15|LINE|L1 270103 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 168-28 chr2 64291634 64291935 + 0.666667 NA Intergenic Intergenic -48975 NR_039632 100616265 NR_039632 ENSG00000283222 MIR4433A MIR4433|hsa-mir-4433a microRNA 4433a ncRNA 155.667-61 chr5 37596336 37596674 + 0.666667 NA intron (NM_001345998, intron 9 of 17) MLT1J|LTR|ERVL-MaLR 217187 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 113.667-61 chr2 38458057 38458362 + 0.666667 NA TTS (NR_110259) TTS (NR_110259) 26915 NR_146454 100996902 Hs.128280 NR_146454 ENSG00000235009 LINC01883 - long intergenic non-protein coding RNA 1883 ncRNA 156.333-43 chr18 72787569 72788037 + 0.666667 NA intron (NR_148694, intron 6 of 11) intron (NR_148694, intron 6 of 11) 65579 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 152.667-53 chr3 40541644 40541998 + 0.666667 NA Intergenic Intergenic 16861 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 131.667-54 chr2 42171233 42171451 + 0.666667 NA intron (NM_001145076, intron 1 of 21) intron (NM_001145076, intron 1 of 21) -1111 NR_110584 102723824 Hs.639826 NR_110584 LOC102723824 - uncharacterized LOC102723824 ncRNA 207.5-12 chr15 86067421 86068012 + 0.666667 NA Intergenic L1MEf|LINE|L1 -11904 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 162.5-19 chr14 83760194 83760596 + 0.666667 NA Intergenic Intergenic 1117763 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 137-9 chr10 52019325 52019641 + 0.666667 NA intron (NM_001098512, intron 5 of 17) MER67D|LTR|ERV1 294645 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 132.667-103 chr9 36899128 36899513 + 0.666667 NA intron (NR_103999, intron 6 of 8) intron (NR_103999, intron 6 of 8) -5789 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 137-42 chr17 58493001 58493338 + 0.666667 NA intron (NM_004687, intron 16 of 18) MIR|SINE|MIR -4761 NM_001080439 124535 Hs.380061 NM_001080439 ENSG00000176160 HSF5 HSF 5|HSTF 5 heat shock transcription factor 5 protein-coding 193-24 chr2 51414637 51415284 + 0.666667 NA intron (NR_135237, intron 4 of 10) (TA)n|Simple_repeat|Simple_repeat 382359 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 118.333-79 chr3 179444825 179445150 + 0.666667 NA intron (NM_021629, intron 1 of 9) intron (NM_021629, intron 1 of 9) 6483 NM_021629 59345 Hs.173030 NM_021629 ENSG00000114450 GNB4 CMTD1F G protein subunit beta 4 protein-coding 165.833-10 chr10 107581036 107581352 + 0.666667 NA Intergenic L1MA10|LINE|L1 -416488 NM_001206569 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 170.667-31 chr2 28263608 28263987 + 0.666667 NA intron (NM_199193, intron 11 of 13) intron (NM_199193, intron 11 of 13) 46662 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 124.167-65 chr4 114989670 114989993 + 0.666667 NA intron (NM_022569, intron 2 of 13) L2a|LINE|L2 123789 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 231.167-32 chr7 51460269 51460707 + 0.666667 NA Intergenic MIRc|SINE|MIR -67232 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 170.333-10 chr10 45482806 45483172 + 0.666667 NA intron (NM_001282866, intron 3 of 7) L1MA4A|LINE|L1 -29868 NR_120674 102724323 Hs.559151 NR_120674 ENSG00000231964 LOC102724323 - uncharacterized LOC102724323 ncRNA 136.667-82 chr5 87358046 87358338 + 0.666667 NA intron (NM_022650, intron 9 of 24) intron (NM_022650, intron 9 of 24) -34564 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 203.667-18 chr2 192221639 192222081 + 0.666667 NA Intergenic Intergenic -26927 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 145.5-34 chr2 70085329 70085697 + 0.666667 NA intron (NR_033872, intron 2 of 10) intron (NR_033872, intron 2 of 10) 1502 NR_033872 400960 Hs.683864 NR_033872 ENSG00000179818 PCBP1-AS1 - PCBP1 antisense RNA 1 ncRNA 154.167-45 chr3 84292693 84293239 + 0.666667 NA Intergenic Intergenic 576609 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 183.5-47 chr4 58447406 58447756 + 0.666667 NA Intergenic Intergenic 88747 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 138.667-9 chr10 39319848 39320234 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 623445 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 124.167-78 chr6 40948410 40948790 + 0.666667 NA intron (NR_110873, intron 1 of 5) MER5A|DNA|hAT-Charlie 74680 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 185.333-49 chr5 90544950 90545586 + 0.666667 NA Intergenic Intergenic -13529 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 124.167-82 chr7 29816538 29816774 + 0.666667 NA intron (NM_001080529, intron 1 of 8) L1ME4b|LINE|L1 10102 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 168-17 chr14 48067625 48068082 + 0.666667 NA Intergenic Intergenic -272839 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 115-82 chr8 52608241 52608581 + 0.666667 NA Intergenic L1ME3|LINE|L1 -42981 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 137.333-86 chr6 51400290 51400544 + 0.666667 NA Intergenic Intergenic -221453 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 193.667-55 chr8 84845824 84846115 + 0.666667 NA intron (NM_001287244, intron 3 of 7) L1P4d|LINE|L1 140042 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 164-83 chrX 66614425 66614717 + 0.666667 NA intron (NM_021783, intron 2 of 6) intron (NM_021783, intron 2 of 6) 1459 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 291-5 chr17 50601225 50601706 + 0.666667 NA intron (NR_046058, intron 18 of 33) intron (NR_046058, intron 18 of 33) -33416 NM_003786 8714 Hs.463421 NM_003786 ENSG00000108846 ABCC3 ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2 ATP binding cassette subfamily C member 3 protein-coding 119-73 chr4 44874727 44874983 + 0.666667 NA Intergenic Intergenic -148221 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 169.667-77 chr8 140371571 140371842 + 0.666667 NA intron (NM_001160372, intron 7 of 22) AluSx1|SINE|Alu 86038 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 139.333-83 chr5 143714752 143715073 + 0.666667 NA Intergenic Intergenic 35052 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 114.667-11 chr10 124195299 124195477 + 0.666667 NA Intergenic L1ME4c|LINE|L1 -101790 NM_001270764 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 148.5-55 chr4 121386609 121386911 + 0.666667 NA Intergenic L3|LINE|CR1 -5742 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 166.333-58 chr4 109428301 109428862 + 0.666667 NA Intergenic MLT1A|LTR|ERVL-MaLR -5134 NM_001300813 10427 Hs.292472 NM_006323 ENSG00000138802 SEC24B SEC24 SEC24 homolog B, COPII coat complex component protein-coding 137-62 chr2 183496556 183496774 + 0.666667 NA Intergenic Intergenic 372222 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 191.5-35 chr3 144324347 144324695 + 0.666667 NA Intergenic L1MA2|LINE|L1 351440 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 229.667-5 chr11 27132952 27133721 + 0.666667 NA intron (NR_125767, intron 3 of 4) L1M2|LINE|L1 85432 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 243.167-3 chr1 99910113 99910663 + 0.666667 NA intron (NM_000028, intron 27 of 33) L1ME3Cz|LINE|L1 59413 NM_000646 178 Hs.904 NM_000028 ENSG00000162688 AGL GDE amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase protein-coding 170-20 chr15 57217252 57217779 + 0.666667 NA intron (NM_207038, intron 8 of 19) intron (NM_207038, intron 8 of 19) -1915 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 169-26 chr2 123073827 123074218 + 0.666667 NA promoter-TSS (NR_147208) promoter-TSS (NR_147208) -541 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 117.667-79 chr3 114255279 114255574 + 0.666667 NA Intergenic L1MA3|LINE|L1 -17848 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 173.833-50 chr5 144512753 144513209 + 0.666667 NA Intergenic Intergenic 307590 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 119.667-31 chr18 13851823 13852065 + 0.666667 NA Intergenic Intergenic 27795 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 137-38 chr15 75821166 75821690 + 0.666667 NA Intergenic Intergenic -22019 NM_001284382 92912 Hs.23033 NM_173469 ENSG00000140367 UBE2Q2 - ubiquitin conjugating enzyme E2 Q2 protein-coding 203.333-53 chrX 40177732 40178073 + 0.666667 NA promoter-TSS (NM_001123383) promoter-TSS (NM_001123383) -573 NM_001123383 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 130.333-63 chr3 102743664 102743995 + 0.666667 NA Intergenic Intergenic 308814 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 121.333-73 chr4 59154197 59154452 + 0.666667 NA Intergenic Intergenic 140751 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 155.5-44 chr5 3243238 3243581 + 0.666667 NA Intergenic ERVL-int|LTR|ERVL 65574 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 187.834-2 chr7 127905644 127906227 + 0.666667 NA intron (NM_014390, intron 14 of 23) intron (NM_014390, intron 14 of 23) -91574 NR_027330 27099 Hs.657377 NM_014411 ENSG00000279078 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 ncRNA 228.667-18 chr17 71987877 71988376 + 0.666667 NA Intergenic Intergenic 37853 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 203.333-20 chr2 81736613 81737093 + 0.666667 NA Intergenic Intergenic -269907 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 131.5-5 chr10 28938551 28939018 + 0.666667 NA Intergenic Intergenic 92376 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 117.167-10 chr10 104849045 104849264 + 0.666667 NA intron (NM_014978, intron 2 of 26) AluSx1|SINE|Alu -182938 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 139.833-5 chr10 74842719 74843189 + 0.666667 NA exon (NM_012330, exon 3 of 18) exon (NM_012330, exon 3 of 18) 16354 NM_012330 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 149.5-58 chr6 166820790 166821080 + 0.666667 NA intron (NM_001318936, intron 2 of 22) LTR106_Mam|LTR|LTR 41590 NM_001318936 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 151.333-62 chr3 64509654 64509952 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR -51543 NR_110151 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 192.667-6 chr1 217511816 217512382 + 0.666667 NA intron (NM_018040, intron 6 of 9) AluJb|SINE|Alu 118991 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 117.333-75 chr3 169218430 169218778 + 0.666667 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -71133 NM_001164000 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 341.667-5 chr8 131928113 131928769 + 0.666667 NA intron (NM_001323557, intron 1 of 22) intron (NM_001323557, intron 1 of 22) 11668 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 143.333-13 chr12 52593392 52593653 + 0.666667 NA intron (NM_080747, intron 2 of 8) Charlie2a|DNA|hAT-Charlie 7941 NM_001146226 140807 Hs.662013 NM_080747 ENSG00000170486 KRT72 K6IRS2|K6irs|KRT6|KRT6IRS2 keratin 72 protein-coding 152-39 chr5 25615227 25615535 + 0.666667 NA Intergenic L1M4c|LINE|L1 424428 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 160.5-23 chr18 22472414 22473115 + 0.666667 NA Intergenic Intergenic -54849 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 179.5-23 chr4 33065094 33065467 + 0.666667 NA Intergenic Intergenic 714242 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 117-47 chr2 11973021 11973303 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -33954 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 239.167-12 chr5 72628389 72628828 + 0.666667 NA intron (NR_105007, intron 1 of 2) intron (NR_105007, intron 1 of 2) 32061 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 153.5-50 chr4 158622513 158622793 + 0.666667 NA intron (NM_001253733, intron 10 of 17) L1MA9|LINE|L1 49234 NM_001008393 201725 Hs.380920 NM_001008393 ENSG00000205208 C4orf46 RCDG1 chromosome 4 open reading frame 46 protein-coding 196.667-28 chr2 107363673 107364179 + 0.666667 NA Intergenic MER5A1|DNA|hAT-Charlie -14401 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 151-81 chr8 137109030 137109434 + 0.666667 NA Intergenic L1MA4A|LINE|L1 304356 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 143.333-63 chr4 144909857 144910180 + 0.666667 NA Intergenic Intergenic 187364 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 155.833-7 chr10 48747449 48747854 + 0.666667 NA intron (NM_020945, intron 12 of 61) L1MEd|LINE|L1 62188 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 121.333-106 chr8 84107319 84107516 + 0.666667 NA Intergenic Intergenic -75370 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 116-89 chr7 68637982 68638271 + 0.666667 NA Intergenic L1ME1|LINE|L1 617873 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 153.833-58 chr8 33627047 33627326 + 0.666667 NA Intergenic Intergenic -27080 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 183-30 chr20 9339402 9339980 + 0.666667 NA intron (NM_000933, intron 4 of 35) intron (NM_000933, intron 4 of 35) 31891 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 136.667-17 chr12 45984088 45984451 + 0.666667 NA intron (NM_004719, intron 1 of 14) L1MC4|LINE|L1 6305 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 128.667-22 chr10 106714242 106714542 + 0.666667 NA intron (NM_001206569, intron 6 of 25) intron (NM_001206569, intron 6 of 25) 450314 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 166.333-60 chr4 150012209 150012529 + 0.666667 NA Intergenic Intergenic -66076 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 147.334-6 chr15 64551735 64552252 + 0.666667 NA intron (NM_015042, intron 1 of 8) AluSx1|SINE|Alu 52573 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 165.667-51 chr4 92512076 92512446 + 0.666667 NA intron (NM_001286838, intron 1 of 14) L1MB3|LINE|L1 207862 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 336.667-2 chr12 22244114 22244875 + 0.666667 NA intron (NM_003034, intron 4 of 4) intron (NM_003034, intron 4 of 4) 90220 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 205.167-8 chr11 4513161 4513528 + 0.666667 NA Intergenic Intergenic 24465 NM_001005171 390036 Hs.553726 NM_001005171 ENSG00000196778 OR52K1 OR11-8 olfactory receptor family 52 subfamily K member 1 protein-coding 134-85 chr5 2363088 2363439 + 0.666667 NA Intergenic L1M3b|LINE|L1 -51062 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 154-78 chr8 82756758 82757155 + 0.666667 NA Intergenic Intergenic -155148 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 198.333-22 chr2 104689696 104690126 + 0.666667 NA Intergenic Intergenic 67808 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 140.167-19 chr14 73829419 73830021 + 0.666667 NA intron (NR_135238, intron 1 of 1) intron (NR_135238, intron 1 of 1) 415 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 186.667-33 chr2 44605539 44606292 + 0.666667 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 243968 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 157.5-32 chr2 84028889 84029288 + 0.666667 NA Intergenic Intergenic -261594 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 188-70 chr9 39035802 39036335 + 0.666667 NA Intergenic L1MEd|LINE|L1 252235 NM_033655 79937 Hs.128474 NM_033655 ENSG00000106714 CNTNAP3 CASPR3|CNTNAP3A contactin associated protein like 3 protein-coding 130-34 chr14 57503389 57503753 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR -9714 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 127.833-51 chr22 47867904 47868394 + 0.666667 NA Intergenic L1ME2|LINE|L1 236475 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 135.667-101 chr7 25333846 25334088 + 0.666667 NA Intergenic Intergenic -105481 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 144.333-22 chr12 31037500 31037835 + 0.666667 NA intron (NR_038927, intron 2 of 2) intron (NR_038927, intron 2 of 2) 36180 NR_038927 100506660 Hs.586774 NR_038927 ENSG00000245614 DDX11-AS1 CONCR|SCAT4 DDX11 antisense RNA 1 ncRNA 116.5-53 chr3 95239494 95239744 + 0.666667 NA Intergenic Intergenic 301356 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 195.333-13 chr16 65130040 65130470 + 0.666667 NA Intergenic L2a|LINE|L2 -8192 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 138.667-84 chr6 55500221 55500638 + 0.666667 NA intron (NM_001287741, intron 4 of 7) Kanga11a|DNA|TcMar-Tc2 78785 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 121.667-29 chr15 76773067 76773303 + 0.666667 NA intron (NR_148227, intron 9 of 32) intron (NR_148227, intron 9 of 32) 88759 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 144.667-44 chr15 58887976 58888224 + 0.666667 NA intron (NR_135042, intron 15 of 18) AluSz6|SINE|Alu 45579 NR_135043 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 259.667-3 chr11 35353342 35353984 + 0.666667 NA intron (NM_001195728, intron 1 of 11) intron (NM_001195728, intron 1 of 11) 65895 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 189.667-48 chr8 54506181 54506578 + 0.666667 NA Intergenic L1MEg|LINE|L1 48444 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 150.5-17 chr12 13108026 13108316 + 0.666667 NA Intergenic L1PA17|LINE|L1 -4504 NM_001367364 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 126.667-41 chr2 76550347 76550663 + 0.666667 NA Intergenic Intergenic -435460 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 194.333-26 chr3 130465003 130465418 + 0.666667 NA intron (NM_001278298, intron 37 of 40) L1MEc|LINE|L1 -95124 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 188.333-31 chr2 62071662 62072107 + 0.666667 NA intron (NM_001321781, intron 2 of 2) MER49|LTR|ERV1 -124231 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 145.333-55 chr4 2973946 2974348 + 0.666667 NA intron (NM_001350173, intron 1 of 13) L2a|LINE|L2 10576 NM_005307 2868 Hs.32959 NM_005307 ENSG00000125388 GRK4 GPRK2L|GPRK4|GRK4a|IT11 G protein-coupled receptor kinase 4 protein-coding 155.333-51 chr2 112502697 112503023 + 0.666667 NA intron (NM_153712, intron 4 of 6) intron (NM_153712, intron 4 of 6) 20704 NM_153712 150465 Hs.358997 NM_153712 ENSG00000114999 TTL - tubulin tyrosine ligase protein-coding 168-75 chr7 52005860 52006413 + 0.666667 NA Intergenic Intergenic -612880 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 180-38 chr4 107577080 107577457 + 0.666667 NA Intergenic Intergenic 142966 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 129.833-33 chr2 9743645 9744005 + 0.666667 NA Intergenic MLT1C|LTR|ERVL-MaLR -99617 NM_001318976 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 136.667-57 chr3 31653754 31653992 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -50340 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 138.667-104 chr8 80802671 80802907 + 0.666667 NA intron (NM_001033723, intron 2 of 8) L1PA11|LINE|L1 71679 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 238.667-17 chr21 29004864 29005309 + 0.666667 NA TTS (NM_001320724) TTS (NM_001320724) -12209 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 268.667-13 chr7 49221874 49222507 + 0.666667 NA Intergenic L1M4|LINE|L1 297643 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 192.833-4 chr1 102215119 102215543 + 0.666667 NA Intergenic L1MC1|LINE|L1 -218097 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 213.667-36 chr6 53638922 53639375 + 0.666667 NA Intergenic Intergenic 10768 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 200-43 chr20 43526035 43526544 + 0.666667 NA intron (NM_032107, intron 7 of 21) intron (NM_032107, intron 7 of 21) 11848 NM_015478 26013 Hs.709356 NM_015478 ENSG00000185513 L3MBTL1 H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3 L3MBTL histone methyl-lysine binding protein 1 protein-coding 198.834-7 chr20 19675652 19676238 + 0.666667 NA intron (NM_020689, intron 9 of 16) intron (NM_020689, intron 9 of 16) -210576 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 219-6 chr12 51174451 51175065 + 0.666667 NA Intergenic Intergenic -1623 NM_005653 7024 Hs.48849 NM_005653 ENSG00000135457 TFCP2 LBP1C|LSF|LSF1D|SEF|TFCP2C transcription factor CP2 protein-coding 183.833 chr1 95793104 95793488 + 0.666667 NA Intergenic Intergenic -198772 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 136.667-49 chr20 11581677 11581995 + 0.666667 NA Intergenic L1MC4a|LINE|L1 288879 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 132.333-84 chr5 53574603 53574884 + 0.666667 NA intron (NR_134475, intron 2 of 5) L1MB8|LINE|L1 14104 NR_134473 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 170.667-16 chr14 26033310 26033632 + 0.666667 NA Intergenic HERV16-int|LTR|ERVL 519959 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 174.667-23 chr15 77423407 77423773 + 0.666667 NA intron (NM_001304505, intron 1 of 9) intron (NM_001304505, intron 1 of 9) 2702 NM_001304504 10363 Hs.69594 NM_018200 ENSG00000140382 HMG20A HMGX1|HMGXB1 high mobility group 20A protein-coding 119.333-70 chr4 34905921 34906153 + 0.666667 NA Intergenic MLT1E2|LTR|ERVL-MaLR -636290 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 125.333-68 chr2 206360092 206360474 + 0.666667 NA Intergenic Intergenic -83249 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 190.833-21 chr19 30350424 30350791 + 0.666667 NA Intergenic Intergenic -21777 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 184.667-52 chr9 32356092 32356611 + 0.666667 NA Intergenic L1ME1|LINE|L1 -28252 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 165-48 chr5 88854931 88855359 + 0.666667 NA intron (NM_001131005, intron 2 of 10) intron (NM_001131005, intron 2 of 10) -27957 NM_001364341 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 141.834-6 chr5 124526400 124526902 + 0.666667 NA Intergenic Intergenic -88131 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 135.833-53 chr5 10249109 10249503 + 0.666667 NA promoter-TSS (NM_001306153) promoter-TSS (NM_001306153) 582 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 121.333-64 chr3 72683816 72684086 + 0.666667 NA Intergenic MLT1L|LTR|ERVL-MaLR -19702 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 150.5-11 chr10 92152458 92152783 + 0.666667 NA intron (NM_001178137, intron 4 of 9) L1MC5a|LINE|L1 90659 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 182.333-9 chr10 98768176 98768712 + 0.666667 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 156124 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 152.667-52 chr3 35173871 35174278 + 0.666667 NA intron (NR_110817, intron 2 of 3) L1PA8|LINE|L1 219949 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 137.667-21 chr12 46442967 46443202 + 0.666667 NA intron (NR_125381, intron 2 of 2) intron (NR_125381, intron 2 of 2) 58977 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 129.667-25 chr12 98229806 98230091 + 0.666667 NA Intergenic MIRb|SINE|MIR 227197 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 115.5-36 chr15 43122752 43123097 + 0.666667 NA Intergenic Intergenic -10191 NR_144541 80021 Hs.511175 NM_024956 ENSG00000137842 TMEM62 - transmembrane protein 62 protein-coding 124.667-88 chr4 157051448 157051862 + 0.666667 NA Intergenic MIRb|SINE|MIR -24470 NM_001166061 2743 Hs.32973 NM_000824 ENSG00000109738 GLRB HKPX2 glycine receptor beta protein-coding 138.667-6 chr1 237236579 237236802 + 0.666667 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 194506 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 172.167-30 chr21 28832433 28832757 + 0.666667 NA Intergenic Intergenic 52772 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 152.833-71 chr8 88087521 88087975 + 0.666667 NA intron (NM_005941, intron 6 of 9) AluJb|SINE|Alu -213733 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 126.333-98 chr7 34225438 34225662 + 0.666667 NA Intergenic Intergenic 320011 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 153.833-21 chr14 62591594 62591946 + 0.666667 NA Intergenic Intergenic -451797 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 211.5-38 chrX 80944111 80944560 + 0.666667 NA Intergenic L1M4|LINE|L1 -134458 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 136.5-84 chr7 19823511 19823882 + 0.666667 NA Intergenic Tigger4b|DNA|TcMar-Tigger -50079 NM_001366628 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 196.833-11 chr14 48661900 48662410 + 0.666667 NA Intergenic L1MA9|LINE|L1 -867141 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 201.333-26 chr3 186644297 186644829 + 0.666667 NA intron (NM_001308077, intron 2 of 5) intron (NM_001308077, intron 2 of 5) 4164 NM_001308077 26998 Hs.81073 NM_014375 ENSG00000090512 FETUB 16G2|Gugu|IRL685 fetuin B protein-coding 145.5-14 chr12 80108429 80108790 + 0.666667 NA intron (NM_001368062, intron 1 of 62) L1MC4|LINE|L1 9072 NM_001368062 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 140.667-54 chr3 98363881 98364210 + 0.666667 NA Intergenic L1M1|LINE|L1 10191 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 157.833-10 chr11 4655505 4655904 + 0.666667 NA TTS (NM_152430) TTS (NM_152430) 11722 NM_152430 143503 Hs.470038 NM_152430 ENSG00000180785 OR51E1 D-GPCR|DGPCR|GPR136|GPR164|OR51E1P|OR52A3P|POGR|PSGR2 olfactory receptor family 51 subfamily E member 1 protein-coding 140.833-54 chr6 155224105 155224413 + 0.666667 NA intron (NM_001010927, intron 1 of 12) intron (NM_001010927, intron 1 of 12) 7293 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 204.667-13 chr12 788592 788940 + 0.666667 NA intron (NM_001184985, intron 1 of 27) AluSg4|SINE|Alu 35843 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 148.667-64 chr5 57819744 57820088 + 0.666667 NA Intergenic L1MEc|LINE|L1 79246 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 117-118 chr8 49549884 49550178 + 0.666667 NA Intergenic L1MEc|LINE|L1 -37851 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 204.5-24 chr3 179203340 179203812 + 0.666667 NA exon (NM_006218, exon 5 of 21) exon (NM_006218, exon 5 of 21) 48039 NM_014407 27094 Hs.591285 NM_014407 ENSG00000171121 KCNMB3 BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3 potassium calcium-activated channel subfamily M regulatory beta subunit 3 protein-coding 214.667-22 chr22 31414669 31415180 + 0.666667 NA intron (NM_004147, intron 4 of 8) AluJo|SINE|Alu 15320 NM_004147 4733 Hs.115242 NM_004147 ENSG00000185721 DRG1 NEDD3 developmentally regulated GTP binding protein 1 protein-coding 138-96 chr7 5632946 5633319 + 0.666667 NA intron (NM_207111, intron 15 of 16) AluSg4|SINE|Alu 40316 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 158-65 chrX 124441850 124442208 + 0.666667 NA intron (NM_014253, intron 22 of 30) intron (NM_014253, intron 22 of 30) 95747 NM_002351 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 170.5-67 chr7 82996512 82996991 + 0.666667 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 166133 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 164.333-69 chr6 62221502 62221812 + 0.666667 NA intron (NR_146874, intron 1 of 13) L1MEg|LINE|L1 64568 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 173.667-10 chr11 121062009 121062553 + 0.666667 NA intron (NM_001363644, intron 8 of 8) Tigger3b|DNA|TcMar-Tigger 38209 NM_001130047 219899 Hs.504136 NM_152715 ENSG00000154114 TBCEL El|LRRC35 tubulin folding cofactor E like protein-coding 176.834 chr10 85663240 85663742 + 0.666667 NA intron (NM_017551, intron 12 of 15) MLT1C|LTR|ERVL-MaLR 85760 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 122.5-88 chr7 27414767 27415177 + 0.666667 NA Intergenic Intergenic -167743 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 124.667-55 chr18 73974910 73975246 + 0.666667 NA Intergenic L1MC4|LINE|L1 172756 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 157-25 chr14 50623073 50623480 + 0.666667 NA intron (NM_015915, intron 11 of 13) intron (NM_015915, intron 11 of 13) 45030 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 123.667-108 chr8 90878153 90878472 + 0.666667 NA intron (NM_022351, intron 4 of 12) L2b|LINE|L2 86537 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 170.667-72 chr7 70921376 70921840 + 0.666667 NA Intergenic (TTCTCTT)n|Simple_repeat|Simple_repeat -210536 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 190.833-5 chr10 5151993 5152293 + 0.666667 NA Intergenic HUERS-P1-int|LTR|ERV1 33044 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 152.667-88 chr9 4965822 4966312 + 0.666667 NA Intergenic Intergenic -19019 NM_001322194 3717 Hs.656213 NM_004972 ENSG00000096968 JAK2 JTK10|THCYT3 Janus kinase 2 protein-coding 247-10 chr2 124657109 124657793 + 0.666667 NA intron (NM_130773, intron 13 of 23) L2a|LINE|L2 632164 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 190-63 chr8 140706714 140707148 + 0.666667 NA intron (NR_148037, intron 25 of 34) L1MB8|LINE|L1 11638 NM_001352752 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 118.5-24 chr12 39643797 39644186 + 0.666667 NA intron (NM_001031748, intron 3 of 12) intron (NM_001031748, intron 3 of 12) 17808 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 161.333-53 chr4 73243094 73243480 + 0.666667 NA intron (NM_032217, intron 1 of 33) L2|LINE|L2 15511 NM_032217 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 160-40 chr18 13959176 13959649 + 0.666667 NA Intergenic Intergenic -43705 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 161.333-23 chr14 76025162 76025405 + 0.666667 NA intron (NR_045664, intron 3 of 7) L1PA13|LINE|L1 39520 NM_001255995 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 181.667-20 chr18 34366596 34367037 + 0.666667 NA Intergenic L2a|LINE|L2 -126474 NM_032975 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 189.167-15 chr14 36280673 36281254 + 0.666667 NA Intergenic Intergenic 39674 NM_001308110 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 131.5-41 chr2 232088237 232088862 + 0.666667 NA intron (NR_046477, intron 6 of 18) AluY|SINE|Alu -84104 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 115.167-82 chr5 20606714 20607131 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR -4918 NR_149120 105374676 Hs.561423 NR_149120 ENSG00000251629 LINC02241 - long intergenic non-protein coding RNA 2241 ncRNA 117.333-21 chr13 79999470 79999719 + 0.666667 NA Intergenic Intergenic -11483 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 200.667-15 chr11 48832889 48833358 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr -198477 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 141.5-32 chr14 61797913 61798358 + 0.666667 NA Intergenic Intergenic -14027 NM_001367650 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 139.5-25 chr2 29252285 29252640 + 0.666667 NA intron (NM_004304, intron 11 of 28) intron (NM_004304, intron 11 of 28) -28562 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 146-71 chr8 100875100 100875440 + 0.666667 NA Intergenic MIRb|SINE|MIR 75301 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 208.5-18 chr16 86376308 86376920 + 0.666667 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -30935 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 181.667-51 chr5 107210081 107210584 + 0.666667 NA Intergenic L1ME3C|LINE|L1 -199318 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 240.667-33 chr4 177803636 177804166 + 0.666667 NA intron (NR_028342, intron 2 of 5) intron (NR_028342, intron 2 of 5) 75144 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 180-58 chr8 132950976 132951363 + 0.666667 NA intron (NM_003235, intron 27 of 47) intron (NM_003235, intron 27 of 47) 84211 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 162.333-42 chr20 49857885 49858305 + 0.666667 NA intron (NR_048539, intron 7 of 13) intron (NR_048539, intron 7 of 13) -5764 NR_162136 113219455 NR_162136 MIR12122 - microRNA 12122 ncRNA 135.333-5 chr1 187314621 187314873 + 0.666667 NA intron (NR_126347, intron 2 of 3) intron (NR_126347, intron 2 of 3) -128881 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 150.5-50 chr3 107092944 107093494 + 0.666667 NA Intergenic Intergenic 147419 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 128.333-65 chr2 99976478 99976704 + 0.666667 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 128992 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 192.667-31 chr20 17562801 17563259 + 0.666667 NA 5' UTR (NM_001278608, exon 2 of 10) 5' UTR (NM_001278608, exon 2 of 10) -4197 NM_001278606 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 150.333-67 chr3 64860506 64860888 + 0.666667 NA intron (NR_038264, intron 3 of 5) MIR3|SINE|MIR -172697 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 115.667-121 chr8 137137527 137137835 + 0.666667 NA Intergenic Intergenic 275907 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 176.333-65 chr9 69734614 69734955 + 0.666667 NA intron (NM_001366935, intron 1 of 4) intron (NM_001366935, intron 1 of 4) 25227 NM_001099666 375743 Hs.744192 NM_001099666 ENSG00000188647 PTAR1 - protein prenyltransferase alpha subunit repeat containing 1 protein-coding 129.667-66 chr21 30212147 30212607 + 0.666667 NA promoter-TSS (NR_038855) promoter-TSS (NR_038855) -594 NR_038855 266919 Hs.561028 NR_038855 ENSG00000227342 LINC00307 D21S2091E|NCRNA00307 long intergenic non-protein coding RNA 307 ncRNA 136.833-58 chr5 102085050 102085553 + 0.666667 NA Intergenic Intergenic 210983 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 114.833-27 chr17 79640497 79640729 + 0.666667 NA Intergenic L1MA9|LINE|L1 -29562 NM_001350451 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 136.333-63 chr3 122869430 122869645 + 0.666667 NA intron (NM_032839, intron 7 of 8) L1ME4b|LINE|L1 -16976 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 133.333-39 chr15 62759249 62759592 + 0.666667 NA intron (NM_015059, intron 34 of 55) intron (NM_015059, intron 34 of 55) -64537 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 178.167-47 chr7 147500104 147500371 + 0.666667 NA intron (NM_014141, intron 10 of 22) intron (NM_014141, intron 10 of 22) -122116 NR_031645 100313895 NR_031645 ENSG00000221442 MIR548F4 MIR548F-4|MIRN548F4|hsa-mir-548f-4 microRNA 548f-4 ncRNA 126.667-58 chr3 103395344 103395666 + 0.666667 NA Intergenic Intergenic 128611 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 177-45 chr3 81859159 81859476 + 0.666667 NA Intergenic Intergenic -97672 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 128.667-36 chr14 48643086 48643290 + 0.666667 NA Intergenic Intergenic -848174 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 162-35 chr2 78244669 78245049 + 0.666667 NA intron (NR_110288, intron 1 of 3) MLT1B|LTR|ERVL-MaLR 45872 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 135-88 chr7 79905146 79905473 + 0.666667 NA Intergenic Intergenic -229522 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 197.667-24 chr16 35449967 35450311 + 0.666667 NA Intergenic BSR/Beta|Satellite|Satellite 30457 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 152-12 chr10 96964076 96964367 + 0.666667 NA 3' UTR (NM_032440, exon 8 of 8) 3' UTR (NM_032440, exon 8 of 8) 131276 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 127.167-67 chr4 45255575 45255896 + 0.666667 NA Intergenic MIR|SINE|MIR -529101 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 213.5-37 chr8 93105728 93106377 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie 60798 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 114-60 chr20 8462053 8462226 + 0.666667 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 213435 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 155.667-18 chr10 104161072 104161420 + 0.666667 NA intron (NM_025145, intron 26 of 37) intron (NM_025145, intron 26 of 37) 39075 NM_001002759 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 140.5-31 chr17 70791360 70791600 + 0.666667 NA Intergenic MIR|SINE|MIR 410699 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 120.167-60 chr4 35873484 35873942 + 0.666667 NA Intergenic Intergenic 370226 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 123.167-36 chr16 80179053 80179240 + 0.666667 NA intron (NR_120307, intron 2 of 5) L2c|LINE|L2 -361588 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 141.5-82 chr8 110580742 110580964 + 0.666667 NA Intergenic L2a|LINE|L2 446580 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 116.333-103 chr8 113162270 113162644 + 0.666667 NA intron (NM_001363185, intron 4 of 66) AluSp|SINE|Alu 214695 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 119.333-24 chr13 42135410 42135844 + 0.666667 NA intron (NM_178009, intron 3 of 29) intron (NM_178009, intron 3 of 29) -2415 NR_123714 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 214.5-13 chr16 80339903 80340319 + 0.666667 NA intron (NR_120307, intron 2 of 5) LTR16A|LTR|ERVL -200623 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 160-5 chr1 170714172 170714458 + 0.666667 NA intron (NM_022716, intron 1 of 3) intron (NM_022716, intron 1 of 3) 50184 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 177-41 chr21 30338548 30339104 + 0.666667 NA Intergenic Intergenic -1132 NM_001077711 643812 Hs.580881 NM_001077711 ENSG00000206107 KRTAP27-1 - keratin associated protein 27-1 protein-coding 172.667-11 chr10 72021463 72021811 + 0.666667 NA Intergenic LOR1a|LTR|ERV1 57242 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 177.333-33 chr2 36711032 36711412 + 0.666667 NA intron (NM_001177969, intron 1 of 14) intron (NM_001177969, intron 1 of 14) 14515 NM_001328661 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 133-56 chr3 12151453 12152058 + 0.666667 NA intron (NM_133625, intron 5 of 12) intron (NM_133625, intron 5 of 12) 7157 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 137.667-88 chr7 5187000 5187280 + 0.666667 NA Intergenic AluY|SINE|Alu -3093 NM_001278299 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 122-6 chr1 214249814 214250020 + 0.666667 NA Intergenic Intergenic -31242 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 265.833-11 chr4 82916081 82916754 + 0.666667 NA intron (NM_001317776, intron 5 of 5) intron (NM_001317776, intron 5 of 5) -15501 NR_034076 100499177 Hs.728916 NR_034075 ENSG00000251022 THAP9-AS1 - THAP9 antisense RNA 1 ncRNA 129.5-68 chr5 3960666 3960957 + 0.666667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 364979 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 167.833-55 chr8 55088573 55088977 + 0.666667 NA Intergenic Intergenic -13253 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 115-2 chr1 169858865 169859069 + 0.666667 NA intron (NM_181093, intron 11 of 13) intron (NM_181093, intron 11 of 13) 34929 NM_020423 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 152-52 chr8 130800746 130801020 + 0.666667 NA intron (NM_001115, intron 14 of 17) MLT1A0|LTR|ERVL-MaLR 240026 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 119.333-36 chr17 57540647 57540993 + 0.666667 NA intron (NM_001322250, intron 7 of 13) MLT1C|LTR|ERVL-MaLR -17223 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 140-58 chr4 32067649 32067935 + 0.666667 NA intron (NR_125936, intron 1 of 2) L1PA16|LINE|L1 -45370 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 130.167-29 chr2 42695537 42695960 + 0.666667 NA intron (NM_001330443, intron 9 of 16) intron (NM_001330443, intron 9 of 16) 68513 NM_148962 165140 Hs.168439 NM_148962 ENSG00000162881 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid receptor 1 protein-coding 177.5-41 chr2 124745654 124746094 + 0.666667 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 720587 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 137.333-48 chr2 72043566 72043795 + 0.666667 NA Intergenic L1MEh|LINE|L1 104182 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 177.667-23 chr14 52443266 52443651 + 0.666667 NA intron (NM_001160047, intron 18 of 20) L2c|LINE|L2 109047 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 196-27 chr17 66492722 66493175 + 0.666667 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) -76094 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 175.667-30 chr2 79846811 79847215 + 0.666667 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 19570 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 185.333-66 chrX 50664274 50664730 + 0.666667 NA intron (NR_027121, intron 2 of 9) intron (NR_027121, intron 2 of 9) 149542 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 129.167-84 chr8 123914228 123914528 + 0.666667 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 62391 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 132.833-48 chr3 78400899 78401318 + 0.666667 NA Intergenic Intergenic -352145 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 221.5-20 chr2 143211091 143211524 + 0.666667 NA intron (NM_018460, intron 3 of 13) intron (NM_018460, intron 3 of 13) 81888 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 258.834-2 chr6 50798383 50799146 + 0.666667 NA Intergenic MLT1J|LTR|ERVL-MaLR -20107 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 114.667-75 chr3 47980545 47980789 + 0.666667 NA intron (NM_002375, intron 2 of 18) intron (NM_002375, intron 2 of 18) 108181 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 117.667-81 chr3 127090433 127090713 + 0.666667 NA Intergenic Intergenic 101979 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 141-62 chr4 19830465 19830757 + 0.666667 NA Intergenic Intergenic -421294 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 115.667-15 chr10 104690628 104690920 + 0.666667 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -24558 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 172.667-59 chr4 42619411 42620032 + 0.666667 NA intron (NM_001105529, intron 4 of 35) intron (NM_001105529, intron 4 of 35) 37384 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 151-52 chr4 45343289 45343679 + 0.666667 NA Intergenic Intergenic -616850 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 140.667-34 chr15 73145867 73146210 + 0.666667 NA intron (NM_002499, intron 5 of 28) L2c|LINE|L2 93554 NM_001172624 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 123.667-22 chr12 5036902 5037191 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR -6833 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 168.667-8 chr11 100462935 100463231 + 0.666667 NA Intergenic Intergenic -224205 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 180-36 chr4 57107211 57107766 + 0.666667 NA intron (NM_001553, intron 1 of 4) intron (NM_001553, intron 1 of 4) -2274 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 312.833-8 chr8 135742095 135742717 + 0.666667 NA Intergenic U1|snRNA|snRNA 284950 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 188.833-8 chr11 101112220 101112568 + 0.666667 NA intron (NM_000926, intron 2 of 7) L2|LINE|L2 16669 NM_001202474 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 168.833-4 chr10 12956252 12956557 + 0.666667 NA intron (NM_001282658, intron 6 of 6) intron (NM_001282658, intron 6 of 6) 45309 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 190.833-28 chr3 69570225 69570701 + 0.666667 NA Intergenic L2b|LINE|L2 -169001 NM_001354605 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 127-22 chr12 42785838 42786213 + 0.666667 NA Intergenic Charlie29a|DNA|hAT-Charlie 93809 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 138.333-55 chr19 27771338 27771766 + 0.666667 NA Intergenic HSAT4|Satellite|centr -21879 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 196-28 chr17 69045632 69046039 + 0.666667 NA intron (NM_080283, intron 3 of 38) THE1D|LTR|ERVL-MaLR 15092 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 153.834-3 chr7 33914800 33915356 + 0.666667 NA intron (NM_133468, intron 3 of 15) intron (NM_133468, intron 3 of 15) 9539 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 186.667-76 chr7 89447243 89447583 + 0.666667 NA Intergenic Intergenic -651676 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 125.333-130 chrX 7176990 7177292 + 0.666667 NA intron (NM_001320751, intron 2 of 11) MLT1D|LTR|ERVL-MaLR -28988 NM_012080 8226 Hs.185910 NM_012080 ENSG00000130021 PUDP DXF68S1E|FAM16AX|GS1|HDHD1|HDHD1A pseudouridine 5'-phosphatase protein-coding 125.333-60 chr18 3780836 3781320 + 0.666667 NA intron (NM_001242762, intron 2 of 9) AluJr4|SINE|Alu 64280 NM_001242765 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 280.333-12 chr2 179371842 179372365 + 0.666667 NA Intergenic Intergenic -107271 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 118.667-115 chr8 116630605 116630904 + 0.666667 NA Intergenic Intergenic -21346 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 153.667-76 chr8 62836145 62836410 + 0.666667 NA intron (NM_001304533, intron 4 of 6) L1PA16|LINE|L1 -141584 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 164.667-60 chr5 129532292 129532562 + 0.666667 NA intron (NM_133638, intron 6 of 22) L1ME2|LINE|L1 -71738 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 157.833-20 chr13 90437984 90438322 + 0.666667 NA Intergenic L1MCb|LINE|L1 -55135 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 132.833-55 chr7 3730215 3730708 + 0.666667 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -399224 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 119-50 chr2 14026602 14026904 + 0.666667 NA Intergenic Intergenic 374205 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 231.333-8 chr1 247736983 247737584 + 0.666667 NA intron (NM_001355292, intron 1 of 4) intron (NM_001355292, intron 1 of 4) -1332 NM_001004732 343170 NM_001004732 ENSG00000153230 OR14K1 OR1-39|OR1.5.9|OR5AY1 olfactory receptor family 14 subfamily K member 1 protein-coding 208.833-17 chr17 69057290 69057740 + 0.666667 NA intron (NM_080283, intron 1 of 38) intron (NM_080283, intron 1 of 38) 3412 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 130-15 chr10 60782998 60783297 + 0.666667 NA intron (NM_033379, intron 2 of 6) intron (NM_033379, intron 2 of 6) 4669 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 153-19 chr15 58093760 58094093 + 0.666667 NA Intergenic L1MEd|LINE|L1 -28003 NM_001206897 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 158.5-92 chrX 79396939 79397424 + 0.666667 NA Intergenic Intergenic -29629 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 146.5-17 chr11 44189058 44189398 + 0.666667 NA intron (NM_207122, intron 8 of 13) intron (NM_207122, intron 8 of 13) 93031 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 163.667-30 chr18 69779785 69780301 + 0.666667 NA intron (NM_152721, intron 7 of 7) intron (NM_152721, intron 7 of 7) 167830 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 183.5-46 chr4 56455639 56456088 + 0.666667 NA intron (NM_001079525, intron 9 of 9) HAL1|LINE|L1 -11754 NM_001267722 6731 Hs.237825 NM_006947 ENSG00000174780 SRP72 BMFF|BMFS1|HEL103 signal recognition particle 72 protein-coding 114.5-49 chr2 82218472 82218679 + 0.666667 NA Intergenic (TTATTT)n|Simple_repeat|Simple_repeat -638228 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 189.667-28 chr2 159252846 159253159 + 0.666667 NA intron (NM_001330279, intron 8 of 9) intron (NM_001330279, intron 8 of 9) 33701 NM_001128213 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 131.333-71 chr3 99334007 99334352 + 0.666667 NA Intergenic Intergenic -304415 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 122.5-101 chr8 102168964 102169380 + 0.666667 NA Intergenic AluSz6|SINE|Alu 43740 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 179.667-28 chr2 186361791 186362203 + 0.666667 NA Intergenic Intergenic -124263 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 166.333-85 chr9 28679178 28679512 + 0.666667 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 39960 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 199.5-27 chr4 65139212 65139948 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -135080 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 208-27 chr3 163786286 163786702 + 0.666667 NA Intergenic L1PB1|LINE|L1 385062 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 152.833-72 chr8 137120899 137121409 + 0.666667 NA Intergenic Intergenic 292434 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 184.167-48 chr9 27926689 27927028 + 0.666667 NA Intergenic Intergenic -352992 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 174-5 chr1 117511258 117511903 + 0.666667 NA intron (NM_006699, intron 12 of 12) L2a|LINE|L2 94190 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 127-41 chr17 65981691 65982099 + 0.666667 NA intron (NM_001353129, intron 17 of 26) intron (NM_001353129, intron 17 of 26) -155352 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 265.667-2 chr1 163370352 163370898 + 0.666667 NA Intergenic Intergenic 48671 NM_145697 83540 Hs.651950 NM_031423 ENSG00000143228 NUF2 CDCA1|CT106|NUF2R NUF2 component of NDC80 kinetochore complex protein-coding 237.833-12 chr5 41113710 41114155 + 0.666667 NA Intergenic LTR16B1|LTR|ERVL -42590 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 117.167-61 chr3 63510338 63510596 + 0.666667 NA intron (NM_001130003, intron 3 of 5) intron (NM_001130003, intron 3 of 5) 39584 NR_046677 100874016 Hs.441275 NR_046677 ENSG00000241359 SYNPR-AS1 - SYNPR antisense RNA 1 ncRNA 190.167-24 chr18 38890006 38890337 + 0.666667 NA Intergenic Intergenic 732004 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 165.667-2 chr1 81878026 81878352 + 0.666667 NA intron (NM_001366002, intron 3 of 20) intron (NM_001366002, intron 3 of 20) 75736 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 161.667-47 chr20 59850975 59851294 + 0.666667 NA Intergenic Intergenic 82503 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 176.5-37 chr20 44468197 44468555 + 0.666667 NA Intergenic AluSz6|SINE|Alu -3032 NR_132342 140834 Hs.357589 NM_001287807 ENSG00000168746 LINC01620 C20orf62|dJ1013A22.3 long intergenic non-protein coding RNA 1620 ncRNA 153.333-86 chr8 136907056 136907612 + 0.666667 NA Intergenic MER41-int|LTR|ERV1 376536 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 144.333-55 chr22 27104836 27105231 + 0.666667 NA Intergenic L1ME4b|LINE|L1 -44515 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 127.5-36 chr2 105631375 105631617 + 0.666667 NA Intergenic Tigger17a|DNA|TcMar-Tigger -20937 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 117.333-100 chr7 40230267 40230540 + 0.666667 NA intron (NM_024728, intron 6 of 14) intron (NM_024728, intron 6 of 14) 95427 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 248.667-7 chr11 107676077 107676612 + 0.666667 NA Intergenic Intergenic 35712 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 134-51 chr17 54925142 54925439 + 0.666667 NA intron (NM_001321173, intron 7 of 9) intron (NM_001321173, intron 7 of 9) 24438 NM_005486 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 227.667-14 chr22 22029757 22030390 + 0.666667 NA intron (NR_135291, intron 1 of 6) L1MEg|LINE|L1 13861 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 202.833 chr10 73553590 73554139 + 0.666667 NA promoter-TSS (NR_135250) promoter-TSS (NR_135250) -524 NR_135250 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 203.5-44 chr8 103229205 103229674 + 0.666667 NA 3' UTR (NM_024812, exon 3 of 3) 3' UTR (NM_024812, exon 3 of 3) -57299 NR_109954 100499183 Hs.654812 NR_034092 ENSG00000247081 BAALC-AS1 FZD6-DT|lncFZD6 BAALC antisense RNA 1 ncRNA 166.667-19 chr18 13992483 13992949 + 0.666667 NA Intergenic Intergenic -77009 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 136.333-28 chr14 53740136 53740353 + 0.666667 NA Intergenic Intergenic 208240 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 123.333-113 chr8 121282564 121282894 + 0.666667 NA Intergenic Intergenic -356617 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 186.833-36 chr5 29507222 29507764 + 0.666667 NA Intergenic Intergenic -111517 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 156.667-39 chr16 59366927 59367346 + 0.666667 NA Intergenic LTR9|LTR|ERV1 388055 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 170.5-10 chr10 78114043 78114635 + 0.666667 NA Intergenic Intergenic 80476 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 139.667-87 chr7 158685675 158686113 + 0.666667 NA intron (NM_001281932, intron 9 of 28) MER33|DNA|hAT-Charlie 18910 NM_001281932 54892 Hs.18616 NM_017760 ENSG00000146918 NCAPG2 3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2 non-SMC condensin II complex subunit G2 protein-coding 124.167-69 chr4 167144245 167144569 + 0.666667 NA intron (NM_001204352, intron 2 of 11) intron (NM_001204352, intron 2 of 11) 90019 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 133-89 chr7 34589713 34589968 + 0.666667 NA intron (NR_033664, intron 2 of 4) intron (NR_033664, intron 2 of 4) -68378 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 129.167-9 chr10 81014305 81014552 + 0.666667 NA Intergenic L2c|LINE|L2 364631 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 178.167-34 chr4 69587999 69588323 + 0.666667 NA TTS (NM_006798) TTS (NM_006798) 51481 NM_001301233 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 120.5-64 chr4 36446573 36446932 + 0.666667 NA Intergenic MIR|SINE|MIR -20324 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 175.5-22 chr2 46830797 46831220 + 0.666667 NA intron (NR_024452, intron 1 of 2) L2b|LINE|L2 3144 NR_024452 100134259 Hs.114449 NR_024452 ENSG00000239332 LINC01119 - long intergenic non-protein coding RNA 1119 ncRNA 119-80 chr5 13268718 13269197 + 0.666667 NA Intergenic Intergenic -236071 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 232-5 chr10 89564644 89565206 + 0.666667 NA Intergenic Intergenic 27902 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 243.333-4 chr11 85301975 85302695 + 0.666667 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 324935 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 231.667-14 chr15 100427517 100427884 + 0.666667 NA intron (NR_120374, intron 4 of 4) intron (NR_120374, intron 4 of 4) 54761 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 122.667-43 chr2 81857487 81857910 + 0.666667 NA Intergenic Intergenic -390752 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 140.167-62 chr6 119006597 119007097 + 0.666667 NA intron (NM_024581, intron 6 of 17) intron (NM_024581, intron 6 of 17) 62296 NR_030315 693128 NR_030315 ENSG00000207982 MIR548B MIRN548B microRNA 548b ncRNA 122.333-95 chr6 63882205 63882526 + 0.666667 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 75529 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 121.667-53 chr2 44720996 44721233 + 0.666667 NA intron (NM_024766, intron 7 of 10) L1MC|LINE|L1 217774 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 217.833-14 chr2 99759044 99759494 + 0.666667 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) -269252 NM_001321454 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 172.666-4 chr3 115093338 115093853 + 0.666667 NA intron (NM_001348800, intron 1 of 11) intron (NM_001348800, intron 1 of 11) 6713 NM_001348804 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 198.5-7 chr12 93226030 93226516 + 0.666667 NA intron (NR_040096, intron 2 of 4) L1ME3Cz|LINE|L1 51907 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 206.167-16 chr3 8431472 8431863 + 0.666667 NA intron (NR_033378, intron 3 of 3) L1MC3|LINE|L1 69991 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 178.167-19 chr18 7503193 7503792 + 0.666667 NA Intergenic Intergenic -42486 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 114.333-34 chr13 102841212 102841473 + 0.666667 NA 3' UTR (NM_017693, exon 11 of 11) 3' UTR (NM_017693, exon 11 of 11) -4499 NM_000123 2073 Hs.258429 NM_000123 ENSG00000134899 ERCC5 COFS3|ERCC5-201|ERCM2|UVDR|XPG|XPGC ERCC excision repair 5, endonuclease protein-coding 115.167-27 chr12 91828260 91828501 + 0.666667 NA Intergenic L2c|LINE|L2 313333 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 195-2 chr1 45418275 45418843 + 0.666667 NA intron (NM_007170, intron 3 of 10) intron (NM_007170, intron 3 of 10) 72604 NM_001320800 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 149-19 chr12 27568079 27568392 + 0.666667 NA intron (NM_003622, intron 1 of 29) intron (NM_003622, intron 1 of 29) 44029 NM_001198916 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 245.333 chr1 184694523 184694944 + 0.666667 NA intron (NM_025191, intron 19 of 19) intron (NM_025191, intron 19 of 19) 60125 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 175.5-18 chr18 34161885 34162256 + 0.666667 NA intron (NM_001353232, intron 1 of 9) intron (NM_001353232, intron 1 of 9) 60400 NM_001282527 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 124.667-73 chr3 3258730 3259025 + 0.666667 NA Intergenic MER103C|DNA|hAT-Charlie -79160 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 132.667-80 chr6 37689713 37689984 + 0.666667 NA intron (NM_153487, intron 1 of 16) L2a|LINE|L2 8035 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 138.333-28 chr14 46860690 46861009 + 0.666667 NA intron (NM_001113498, intron 14 of 16) intron (NM_001113498, intron 14 of 16) -209068 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 148.333-61 chr3 59663060 59663452 + 0.666667 NA Intergenic L2a|LINE|L2 -4759 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 152.334 chr1 223841067 223841603 + 0.666667 NA intron (NM_005426, intron 1 of 18) intron (NM_005426, intron 1 of 18) 4612 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 155.5-30 chr2 102582599 102582886 + 0.666667 NA Intergenic L1MEf|LINE|L1 -36811 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 169.167-5 chr10 87937768 87938086 + 0.666667 NA intron (NM_001304717, intron 6 of 9) Tigger10|DNA|TcMar-Tigger 74302 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 113.667-80 chr3 86975378 86975711 + 0.666667 NA intron (NM_001320494, intron 2 of 3) MIR3|SINE|MIR 15605 NM_001320494 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 320.667-12 chr7 34251009 34251490 + 0.666667 NA Intergenic AluSz|SINE|Alu 345710 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 230.833-12 chr2 196894838 196895430 + 0.666667 NA intron (NM_001321099, intron 8 of 27) intron (NM_001321099, intron 8 of 27) 31573 NM_024989 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 130-64 chr20 57060081 57060464 + 0.666667 NA Intergenic Intergenic -153424 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 168.667-76 chr8 51240081 51240507 + 0.666667 NA Intergenic Intergenic 569151 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 231-3 chr1 239928164 239928683 + 0.666667 NA Intergenic LOR1-int|LTR|ERV1 -28551 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 134-101 chr8 49899358 49899660 + 0.666667 NA Intergenic Intergenic -10287 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 151-62 chr5 122726715 122727098 + 0.666667 NA intron (NR_109881, intron 2 of 11) intron (NR_109881, intron 2 of 11) 3654 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 149.333-43 chr18 8753087 8753493 + 0.666667 NA intron (NM_015210, intron 4 of 16) intron (NM_015210, intron 4 of 16) 35909 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 136.5-65 chr3 130624102 130624481 + 0.666667 NA intron (NM_001102608, intron 23 of 35) intron (NM_001102608, intron 23 of 35) 63957 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 170.5-19 chr14 67924285 67924755 + 0.666667 NA intron (NM_133509, intron 7 of 10) THE1B|LTR|ERVL-MaLR 100928 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 124.167-76 chr5 144660181 144660589 + 0.666667 NA Intergenic Intergenic 454994 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 144.667-5 chr1 159358831 159359284 + 0.666667 NA Intergenic L1ME3F|LINE|L1 -38408 NM_001363557 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 159.333-61 chr4 149140355 149140628 + 0.666667 NA Intergenic Intergenic -13804 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 193-43 chr8 117203490 117203808 + 0.666667 NA Intergenic Intergenic 68654 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 135.5-56 chr3 83237332 83237584 + 0.666667 NA Intergenic Intergenic 1251316 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 158.667-56 chr3 31129261 31129674 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger 32320 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 135.333-10 chr10 47296291 47296511 + 0.666667 NA Intergenic Intergenic -3796 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 125-27 chr13 105444849 105445137 + 0.666667 NA Intergenic Intergenic -20874 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 157-44 chr2 234226121 234226467 + 0.666667 NA Intergenic Intergenic 175592 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 129.667-60 chr2 239977680 239977980 + 0.666667 NA intron (NM_001322019, intron 9 of 9) intron (NM_001322019, intron 9 of 9) -34736 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 154.833-16 chr14 45718369 45718709 + 0.666667 NA Intergenic Intergenic -2937 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 129.667-47 chr2 52362207 52362491 + 0.666667 NA intron (NR_135237, intron 10 of 10) L1MCc|LINE|L1 -8299 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 128-97 chrX 67259830 67260142 + 0.666667 NA Intergenic MamRep38|DNA|hAT -284035 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 129.167-31 chr16 77045994 77046325 + 0.666667 NA Intergenic Intergenic -145031 NM_001286640 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 124.667-66 chr20 8754652 8754897 + 0.666667 NA intron (NM_182734, intron 23 of 32) MER102a|DNA|hAT-Charlie -76411 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 141.667-54 chr20 37070926 37071214 + 0.666667 NA intron (NM_002895, intron 2 of 21) AluSx|SINE|Alu 24927 NM_183404 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 160-3 chr1 152504988 152505248 + 0.666667 NA Intergenic Intergenic -5685 NM_178438 254910 Hs.516410 NM_178438 ENSG00000186207 LCE5A LEP18|SPRL5A late cornified envelope 5A protein-coding 135.667-109 chr8 139148277 139148712 + 0.666667 NA Intergenic Intergenic -234453 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 157-48 chr20 44048112 44048367 + 0.666667 NA intron (NM_001098797, intron 3 of 8) AluSz|SINE|Alu 102343 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 147-46 chr21 33904623 33905002 + 0.666667 NA intron (NM_001697, intron 5 of 6) AluSz|SINE|Alu 10992 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5PO ATP5O|ATPO|HMC08D05|OSCP ATP synthase peripheral stalk subunit OSCP protein-coding 166.333-6 chr10 28132230 28132522 + 0.666667 NA intron (NR_134518, intron 4 of 16) intron (NR_134518, intron 4 of 16) -58998 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 288.667-5 chr2 7756085 7756691 + 0.666667 NA Intergenic Intergenic 143267 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 132.5-97 chr8 86855738 86855959 + 0.666667 NA Intergenic AluY|SINE|Alu -10567 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 125.333-92 chr5 39537676 39537946 + 0.666667 NA Intergenic Intergenic 17380 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 197.333-31 chr22 20188854 20189234 + 0.666667 NA Intergenic AluSz|SINE|Alu 15874 NR_038460 284865 Hs.638498 NR_038460 ENSG00000249923 LOC284865 - uncharacterized LOC284865 ncRNA 166.333-49 chr3 34666250 34666761 + 0.666667 NA Intergenic MER1B|DNA|hAT-Charlie 727518 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 175.667-42 chr3 58244243 58244798 + 0.666667 NA intron (NM_020676, intron 1 of 8) AluJr|SINE|Alu 6728 NM_001320126 57406 Hs.476454 NM_020676 ENSG00000163686 ABHD6 - abhydrolase domain containing 6 protein-coding 145.667-20 chr12 64234620 64234993 + 0.666667 NA Intergenic L1MB2|LINE|L1 -12510 NM_152440 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 129.333-52 chr2 164932345 164932664 + 0.666667 NA intron (NM_001199148, intron 6 of 10) L1PA13|LINE|L1 23021 NM_001351539 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 116.667-37 chr15 61457009 61457315 + 0.666667 NA Intergenic Intergenic -227860 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 193.333-34 chr20 20979326 20979710 + 0.666667 NA Intergenic Intergenic 126840 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 187.667-5 chr10 27918175 27918667 + 0.666667 NA intron (NM_001290021, intron 9 of 13) L1ME2|LINE|L1 63450 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 176.667-15 chr10 83682921 83683247 + 0.666667 NA Intergenic Intergenic -5995 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 126.333-79 chr4 34287160 34287528 + 0.666667 NA Intergenic Intergenic -17597 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 114.667-122 chr8 25336787 25337060 + 0.666667 NA intron (NM_024940, intron 22 of 51) intron (NM_024940, intron 22 of 51) -8479 NR_106936 102465527 NR_106936 ENSG00000274988 MIR6876 hsa-mir-6876 microRNA 6876 ncRNA 183-8 chr12 114218632 114218985 + 0.666667 NA Intergenic MIR|SINE|MIR 22962 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 197.167-56 chr7 134816595 134817230 + 0.666667 NA intron (NM_033157, intron 1 of 14) intron (NM_033157, intron 1 of 14) 37278 NM_033138 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 123.833-60 chr7 40359766 40360232 + 0.666667 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 225023 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 154.333-42 chr2 171034445 171034769 + 0.666667 NA intron (NM_001136555, intron 9 of 18) L1MB5|LINE|L1 32366 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 136.667-3 chr1 116063329 116063678 + 0.666667 NA intron (NM_018420, intron 9 of 11) intron (NM_018420, intron 9 of 11) -48252 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 127.667-17 chr11 75594368 75594788 + 0.666667 NA TTS (NR_145823) TTS (NR_145823) 11382 NR_145823 105369391 Hs.689687 NR_145823 ENSG00000255326 LOC105369391 - uncharacterized LOC105369391 ncRNA 155.333-20 chr12 3100079 3100510 + 0.666667 NA intron (NM_006675, intron 2 of 8) L1MEc|LINE|L1 22915 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 126-88 chr7 56043981 56044253 + 0.666667 NA intron (NM_001370522, intron 1 of 8) AluSp|SINE|Alu 7327 NM_001370510 5723 Hs.512656 NM_004577 ENSG00000146733 PSPH PSP|PSPHD phosphoserine phosphatase protein-coding 231.833-20 chrX 67924085 67924529 + 0.666667 NA Intergenic L1MA2|LINE|L1 379684 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 134.167-64 chr5 6986696 6986901 + 0.666667 NA Intergenic Intergenic -158877 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 115.5-54 chr2 164556113 164556363 + 0.666667 NA intron (NM_004490, intron 2 of 13) intron (NM_004490, intron 2 of 13) 12257 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 214.5-18 chr2 23543860 23544244 + 0.666667 NA intron (NM_052920, intron 2 of 13) intron (NM_052920, intron 2 of 13) 158873 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 231-33 chr8 126905331 126905786 + 0.666667 NA Intergenic AluSq2|SINE|Alu -107596 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 155.333-6 chr1 164454105 164454414 + 0.666667 NA Intergenic L1MB7|LINE|L1 -105101 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 191-41 chr3 55231381 55231978 + 0.666667 NA Intergenic L2c|LINE|L2 53507 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 179.833-6 chr10 34734692 34735030 + 0.666667 NA intron (NM_001184789, intron 1 of 22) intron (NM_001184789, intron 1 of 22) 80435 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 175-4 chr1 105454568 105455042 + 0.666667 NA Intergenic Intergenic 164130 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 222-37 chr9 73467990 73468623 + 0.666667 NA Intergenic L1PBa|LINE|L1 316441 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 142-63 chr3 80900952 80901320 + 0.666667 NA Intergenic Intergenic -92732 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 143.833-10 chr14 34406115 34406615 + 0.666667 NA Intergenic Intergenic 55875 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 186.667-7 chr10 107500184 107500568 + 0.666667 NA Intergenic AluJo|SINE|Alu -335670 NM_001206569 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 229-35 chr5 32857924 32858520 + 0.666667 NA Intergenic L1MB2|LINE|L1 -89221 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 121.667-64 chr3 48178311 48178709 + 0.666667 NA intron (NM_201567, intron 5 of 13) intron (NM_201567, intron 5 of 13) 9907 NM_201567 993 Hs.437705 NM_001789 ENSG00000164045 CDC25A CDC25A2 cell division cycle 25A protein-coding 117.833-21 chr12 111030761 111031049 + 0.666667 NA Intergenic Intergenic -3260 NM_015267 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 117-14 chr10 52682211 52682531 + 0.666667 NA intron (NR_155748, intron 1 of 2) MLT1K|LTR|ERVL-MaLR 73033 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 298.834-2 chr2 42537876 42538545 + 0.666667 NA intron (NM_001282755, intron 2 of 17) AluY|SINE|Alu -29835 NM_001282756 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 177.667-51 chr3 103923400 103923864 + 0.666667 NA Intergenic Intergenic -399516 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 178.667 chr1 56376436 56376967 + 0.666667 NA Intergenic Intergenic -38262 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 168.667-60 chr4 70763874 70764244 + 0.666667 NA intron (NM_001130709, intron 3 of 11) intron (NM_001130709, intron 3 of 11) 29649 NM_001345840 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 140.167-45 chr3 133660582 133661201 + 0.666667 NA intron (NM_001363889, intron 2 of 27) intron (NM_001363889, intron 2 of 27) 1050 NM_007027 11073 Hs.593379 NM_007027 ENSG00000163781 TOPBP1 Dpb11|TOP2BP1 DNA topoisomerase II binding protein 1 protein-coding 196-30 chr18 22575268 22575700 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -157569 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 122-95 chr9 118469393 118469651 + 0.666667 NA Intergenic Intergenic -210149 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 176.667-48 chr3 83143224 83143601 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR 1157270 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 164.833-52 chr9 28686921 28687385 + 0.666667 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 32152 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 190.333-54 chr8 25844368 25844934 + 0.666667 NA intron (NM_022659, intron 15 of 15) intron (NM_022659, intron 15 of 15) 200762 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 155.333-41 chr19 33978004 33978558 + 0.666667 NA Intergenic Intergenic 181411 NM_001129994 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 184.667-6 chr10 59428086 59428589 + 0.666667 NA Intergenic Intergenic -65156 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 142.667-31 chr14 57326838 57327329 + 0.666667 NA Intergenic L1MEf|LINE|L1 58112 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 171.167-52 chr6 39325818 39326320 + 0.666667 NA Intergenic Intergenic -3101 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 146.667-12 chr1 241661269 241661580 + 0.666667 NA intron (NM_001367482, intron 2 of 27) intron (NM_001367482, intron 2 of 27) 9143 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 126.667-74 chr5 7581353 7581696 + 0.666667 NA intron (NM_020546, intron 3 of 24) L1MEf|LINE|L1 185386 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 125.333-36 chr13 61931448 61931672 + 0.666667 NA Intergenic Intergenic 97988 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 180.667-16 chr12 50816428 50816750 + 0.666667 NA intron (NM_005171, intron 6 of 6) L1MA4A|LINE|L1 -26337 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 133.833-70 chr6 162692241 162692477 + 0.666667 NA intron (NM_004562, intron 1 of 11) MER77|LTR|ERVL -34773 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 153.333-74 chr7 35438493 35438830 + 0.666667 NA Intergenic MER96B|DNA|hAT-Tip100 124806 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 118-117 chr8 33415934 33416213 + 0.666667 NA intron (NM_032664, intron 3 of 4) intron (NM_032664, intron 3 of 4) 57073 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 133.667-13 chr10 64135114 64135400 + 0.666667 NA Intergenic Intergenic -613367 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 211.667-44 chr9 22711074 22711616 + 0.666667 NA intron (NR_038977, intron 3 of 5) MER70B|LTR|ERVL 65145 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 170-85 chrX 44475370 44475788 + 0.666667 NA Intergenic MLT1E3|LTR|ERVL-MaLR 67280 NM_173794 139341 Hs.7549 NM_173794 ENSG00000069509 FUNDC1 - FUN14 domain containing 1 protein-coding 118-76 chr3 21499802 21500027 + 0.666667 NA intron (NM_024697, intron 4 of 7) intron (NM_024697, intron 4 of 7) -42875 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 169.5-11 chr11 40196578 40197069 + 0.666667 NA intron (NM_020929, intron 3 of 4) intron (NM_020929, intron 3 of 4) 96307 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 187.333-59 chr4 61823245 61823778 + 0.666667 NA intron (NM_001371343, intron 9 of 23) MIR|SINE|MIR 338254 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 121.333-3 chr1 70704026 70704212 + 0.666667 NA Intergenic MLT1M|LTR|ERVL-MaLR -2334 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 129-42 chr2 86584128 86584380 + 0.666667 NA intron (NM_001198954, intron 3 of 7) L1MEc|LINE|L1 -20811 NM_001193517 51652 Hs.591582 NM_016079 ENSG00000115561 CHMP3 CGI-149|NEDF|VPS24 charged multivesicular body protein 3 protein-coding 117-125 chr8 144345040 144345232 + 0.666667 NA Intergenic AluSq2|SINE|Alu -8654 NM_031309 83482 Hs.31746 NM_031309 ENSG00000261678 SCRT1 SCRT|ZNF898 scratch family transcriptional repressor 1 protein-coding 199.167-14 chr15 94129440 94129850 + 0.666667 NA Intergenic L1PB4|LINE|L1 -21707 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 116.5-49 chr3 41079441 41079636 + 0.666667 NA Intergenic Intergenic -119967 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 144.667-41 chr14 86000050 86000368 + 0.666667 NA intron (NR_110155, intron 1 of 3) L1M5|LINE|L1 65531 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 125.5-49 chr3 96796566 96796774 + 0.666667 NA Intergenic L4_C_Mam|LINE|RTE-X -17924 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 157.333-81 chrX 47963449 47963800 + 0.666667 NA Intergenic Intergenic 40365 NM_006962 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 164.167-17 chr14 30801054 30801444 + 0.666667 NA Intergenic L1MA8|LINE|L1 -73286 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 257.667-10 chr2 172220130 172220779 + 0.666667 NA Intergenic L4_C_Mam|LINE|RTE-X 117448 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 131.833-76 chrX 105937773 105938067 + 0.666667 NA intron (NM_198465, intron 22 of 28) intron (NM_198465, intron 22 of 28) 100807 NM_000354 6906 Hs.76838 NM_000354 ENSG00000123561 SERPINA7 TBG|TBGQTL serpin family A member 7 protein-coding 153.333-84 chr8 125866362 125866789 + 0.666667 NA Intergenic L1M3|LINE|L1 84622 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 176.667-9 chr1 239985420 239986047 + 0.666667 NA Intergenic Intergenic -21791 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 185.833-17 chr19 44247733 44248202 + 0.666667 NA Intergenic L1PB1|LINE|L1 -11913 NM_001330529 353355 Hs.466891 NM_181756 ENSG00000159915 ZNF233 - zinc finger protein 233 protein-coding 156.167-32 chr2 29486177 29486465 + 0.666667 NA intron (NM_004304, intron 4 of 28) L2b|LINE|L2 -10944 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 154.167-66 chr9 110673703 110674177 + 0.666667 NA intron (NM_001166281, intron 1 of 11) intron (NM_001166281, intron 1 of 11) 5149 NM_001166281 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 115.167-39 chr15 89267927 89268134 + 0.666667 NA intron (NM_001113378, intron 9 of 37) intron (NM_001113378, intron 9 of 37) 24051 NM_018193 55215 Hs.513126 NM_018193 ENSG00000140525 FANCI KIAA1794 FA complementation group I protein-coding 144.667-31 chr12 113538145 113538531 + 0.666667 NA Intergenic AluSz|SINE|Alu 66335 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 165.5-19 chr14 32930103 32930728 + 0.666667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -8464 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 160.667-82 chr9 106010739 106011014 + 0.666667 NA Intergenic Intergenic 316335 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 155.333-26 chr13 80612136 80612458 + 0.666667 NA Intergenic L1M5|LINE|L1 -271171 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 218.667-42 chr7 141812911 141813380 + 0.666667 NA Intergenic Intergenic 22928 NM_018980 54429 Hs.675370 NM_018980 ENSG00000127366 TAS2R5 T2R5 taste 2 receptor member 5 protein-coding 177.5-33 chr18 13948461 13948807 + 0.666667 NA Intergenic Intergenic -32927 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 149.833-7 chr10 121672329 121672590 + 0.666667 NA Intergenic Intergenic -74001 NM_022970 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 136.333-15 chr11 13042379 13042648 + 0.666667 NA Intergenic Intergenic 33197 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 173.333-22 chr14 68491144 68491568 + 0.666667 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 137431 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 241.333-10 chr14 26989724 26990335 + 0.666667 NA Intergenic MIRb|SINE|MIR 81387 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 283-2 chr1 221727595 221728145 + 0.666667 NA intron (NR_111940, intron 1 of 2) intron (NR_111940, intron 1 of 2) 9030 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 144.167-44 chr2 205936938 205937313 + 0.666667 NA Intergenic Intergenic 149049 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 162.667-53 chr3 131225502 131225859 + 0.666667 NA intron (NM_001353043, intron 14 of 17) MIRb|SINE|MIR -136165 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 254.667-6 chr13 25925946 25926490 + 0.666667 NA intron (NM_016529, intron 33 of 36) L2b|LINE|L2 124842 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 133.333-21 chr11 29556188 29556470 + 0.666667 NA Intergenic L1ME1|LINE|L1 -38084 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 158.667-51 chr20 42198972 42199255 + 0.666667 NA intron (NM_133170, intron 17 of 31) intron (NM_133170, intron 17 of 31) -486370 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 126.833-75 chr9 127005431 127005639 + 0.666667 NA intron (NM_001190729, intron 4 of 17) Charlie24|DNA|hAT-Charlie 43310 NM_001190728 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 120-32 chr14 45174018 45174202 + 0.666667 NA intron (NM_001308133, intron 12 of 21) AluSz|SINE|Alu 38171 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 243.833-10 chr14 50044144 50044825 + 0.666667 NA intron (NR_131171, intron 4 of 8) intron (NR_131171, intron 4 of 8) -36964 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 196-3 chr1 116399751 116400176 + 0.666667 NA intron (NM_001160234, intron 18 of 22) intron (NM_001160234, intron 18 of 22) 16593 NM_001160234 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 153.667-17 chr12 18721766 18722121 + 0.666667 NA intron (NM_033123, intron 4 of 14) L2a|LINE|L2 15566 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 123.667-92 chr5 162902750 162902973 + 0.666667 NA Intergenic Intergenic -534710 NM_001364023 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 171-49 chr5 136161524 136161953 + 0.666667 NA intron (NM_001001420, intron 3 of 6) intron (NM_001001420, intron 3 of 6) -26848 NR_026763 9597 Hs.59666 NM_022001 ENSG00000164621 SMAD5-AS1 DAMS|SMAD5AS|SMAD5OS SMAD5 antisense RNA 1 ncRNA 152.667-93 chrX 66189125 66189558 + 0.666667 NA intron (NM_001367233, intron 5 of 20) intron (NM_001367233, intron 5 of 20) 21591 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 149-22 chr12 115893115 115893436 + 0.666667 NA Intergenic MER20|DNA|hAT-Charlie 255379 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 158.667-42 chr2 34349187 34349580 + 0.666667 NA Intergenic Intergenic 282157 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 340.167 chr12 19769876 19770606 + 0.666667 NA Intergenic LTR87|LTR|ERVL? -244444 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 196-2 chr1 60236060 60236464 + 0.666667 NA Intergenic L1ME2|LINE|L1 -162492 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 161-2 chr1 116966293 116966640 + 0.666667 NA intron (NM_020440, intron 5 of 8) intron (NM_020440, intron 5 of 8) -35284 NM_001256109 9398 Hs.654598 NM_004258 ENSG00000134256 CD101 EWI-101|IGSF2|V7 CD101 molecule protein-coding 140.667-70 chr5 130988917 130989143 + 0.666667 NA Intergenic Intergenic 176226 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 126.833-62 chr7 77628430 77628867 + 0.666667 NA intron (NM_001131009, intron 12 of 16) AluSz6|SINE|Alu 67617 NR_134251 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 125-48 chr20 43776603 43776926 + 0.666667 NA Intergenic MLT1C|LTR|ERVL-MaLR -49762 NM_176791 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 193.667-18 chr16 21011561 21011929 + 0.666667 NA intron (NM_001347886, intron 41 of 61) L1M6|LINE|L1 110483 NR_161432 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 171.333-32 chr2 52625867 52626193 + 0.666667 NA Intergenic L1MEf|LINE|L1 76585 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 120-55 chr2 77731923 77732254 + 0.666667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -183846 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 113.833-29 chr17 65743112 65743497 + 0.666667 NA intron (NM_001353129, intron 22 of 26) intron (NM_001353129, intron 22 of 26) 83147 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 121.167-87 chr8 99748218 99748437 + 0.666667 NA intron (NM_017890, intron 39 of 61) intron (NM_017890, intron 39 of 61) 145380 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 167.667-61 chr3 128158382 128158848 + 0.666667 NA intron (NM_021937, intron 1 of 6) Tigger1|DNA|TcMar-Tigger -4701 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 198.667-11 chr10 85273679 85274153 + 0.666667 NA Intergenic L1MB5|LINE|L1 -74978 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 205.667-10 chr12 14430982 14431303 + 0.666667 NA intron (NM_001286515, intron 2 of 12) intron (NM_001286515, intron 2 of 12) 45861 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 178.5-51 chr3 12587014 12587337 + 0.666667 NA intron (NR_148942, intron 13 of 16) intron (NR_148942, intron 13 of 16) 30088 NM_014160 23609 Hs.591666 NM_014160 ENSG00000075975 MKRN2 HSPC070|RNF62 makorin ring finger protein 2 protein-coding 140.333-88 chr8 117146629 117146936 + 0.666667 NA intron (NM_173851, intron 1 of 7) intron (NM_173851, intron 1 of 7) 11787 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 131-73 chr8 78429910 78430110 + 0.666667 NA Intergenic Intergenic -86330 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 127.167-76 chr6 22477781 22478100 + 0.666667 NA Intergenic Intergenic -91626 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 200.5-14 chr15 79862713 79863214 + 0.666667 NA intron (NR_037654, intron 2 of 2) L2|LINE|L2 34034 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 117.167-100 chrX 54265361 54265603 + 0.666667 NA intron (NM_001002838, intron 10 of 22) AluSz|SINE|Alu -82228 NM_017848 54954 Hs.86045 NM_017848 ENSG00000184083 FAM120C CXorf17|ORF34 family with sequence similarity 120C protein-coding 217.333-43 chr9 8312641 8313007 + 0.666667 NA Intergenic Intergenic 421122 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 121.5-83 chr5 52064876 52065286 + 0.666667 NA Intergenic Intergenic 57050 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 227.333-30 chr4 109563963 109564397 + 0.666667 NA intron (NM_017918, intron 1 of 7) AluSc8|SINE|Alu 3934 NM_017918 55013 Hs.234149 NM_017918 ENSG00000005059 MCUB CCDC109B mitochondrial calcium uniporter dominant negative beta subunit protein-coding 128.833-38 chr18 13056591 13057066 + 0.666667 NA intron (NM_032142, intron 19 of 44) intron (NM_032142, intron 19 of 44) 65466 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 160.667-26 chr14 81983284 81983652 + 0.666667 NA Intergenic AluSx1|SINE|Alu -240330 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 145-74 chr6 1153993 1154394 + 0.666667 NA Intergenic Intergenic -52861 NR_027115 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 179.667-57 chr8 120045891 120046518 + 0.666667 NA intron (NM_022783, intron 8 of 8) L1MB8|LINE|L1 -78898 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 170.333-66 chr7 46934514 46934859 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -237564 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 172.167-29 chr21 18204379 18204787 + 0.666667 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -40250 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 212.167-5 chr12 51596562 51597133 + 0.666667 NA intron (NM_001369788, intron 1 of 25) intron (NM_001369788, intron 1 of 25) 5611 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 114.167-73 chr4 160629116 160629428 + 0.666667 NA Intergenic AluSx|SINE|Alu -851488 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 269.833-19 chr5 150872188 150872816 + 0.666667 NA intron (NM_001346557, intron 2 of 3) HERVL-int|LTR|ERVL 25979 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 129.5-81 chr7 54349493 54349719 + 0.666667 NA non-coding (NR_120515, exon 3 of 3) non-coding (NR_120515, exon 3 of 3) 18909 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 153.333-71 chr6 126117923 126118332 + 0.666667 NA Intergenic Intergenic 131587 NR_146804 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 133.333-101 chr6 46289005 46289471 + 0.666667 NA intron (NR_125838, intron 1 of 3) intron (NR_125838, intron 1 of 3) 12914 NR_125838 101926915 Hs.575377 NR_125838 LOC101926915 - uncharacterized LOC101926915 ncRNA 199-35 chr8 81107420 81107943 + 0.666667 NA intron (NM_018440, intron 1 of 8) intron (NM_018440, intron 1 of 8) 4387 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 128.667-61 chr2 33323036 33323305 + 0.666667 NA intron (NM_001166264, intron 20 of 28) MER47A|DNA|TcMar-Tigger -95346 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 121.667-21 chr13 71851476 71851803 + 0.666667 NA intron (NM_080759, intron 1 of 10) Eulor6E|DNA?|DNA? 15553 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 189.833-23 chr3 123568276 123568632 + 0.666667 NA intron (NM_001329784, intron 2 of 8) intron (NM_001329784, intron 2 of 8) 16163 NM_001329787 201562 Hs.705480 NM_198402 ENSG00000206527 HACD2 PTPLB 3-hydroxyacyl-CoA dehydratase 2 protein-coding 136.833-38 chr22 45767865 45768343 + 0.666667 NA intron (NM_013236, intron 9 of 11) L1MC5a|LINE|L1 7580 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 122.833-60 chr3 163156235 163156704 + 0.666667 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat 146832 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 166.667-44 chr5 116787615 116787992 + 0.666667 NA Intergenic Intergenic -25594 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 122-42 chr2 212648367 212648648 + 0.666667 NA Intergenic Intergenic -109705 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 187.333-24 chr17 55835852 55836457 + 0.666667 NA Intergenic Intergenic 85049 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 194.5-36 chr5 124611780 124612196 + 0.666667 NA Intergenic Intergenic 133124 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 148.5-21 chr14 55144048 55144359 + 0.666667 NA intron (NR_003225, intron 3 of 3) AluJb|SINE|Alu 7220 NR_003225 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 125.333-123 chr8 127009979 127010350 + 0.666667 NA Intergenic Intergenic -2990 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 144.333-64 chr4 111409395 111409675 + 0.666667 NA Intergenic L1PA14|LINE|L1 -548888 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 215.667-23 chr2 70681720 70682182 + 0.666667 NA intron (NM_017482, intron 10 of 12) AluJo|SINE|Alu 85764 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 214.833-8 chr14 79495771 79496190 + 0.666667 NA intron (NR_073547, intron 15 of 20) (A)n|Simple_repeat|Simple_repeat 216600 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 165.667-69 chr8 4932134 4932503 + 0.666667 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 62596 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 162.333-65 chr6 86800398 86800711 + 0.666667 NA Intergenic L1MA2|LINE|L1 -136974 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 222.833-21 chrX 42223817 42224324 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -300516 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 128-65 chr4 62519253 62519593 + 0.666667 NA Intergenic Intergenic -357658 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 128.333-75 chr20 24044871 24045203 + 0.666667 NA Intergenic Tigger15a|DNA|TcMar-Tigger -56258 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 215.667-41 chr5 74590173 74590678 + 0.666667 NA Intergenic Intergenic -49598 NM_001292004 3074 Hs.69293 NM_000521 ENSG00000049860 HEXB ENC-1AS|HEL-248|HEL-S-111 hexosaminidase subunit beta protein-coding 177.333-62 chr8 59721761 59722063 + 0.666667 NA Intergenic Intergenic 559488 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 205.333-32 chr21 19614432 19614909 + 0.666667 NA Intergenic Intergenic 285085 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 206.5-21 chr4 41875062 41875604 + 0.666667 NA Intergenic Intergenic 7278 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 124.333-29 chr14 63462637 63462920 + 0.666667 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 45460 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 162.167-41 chr5 31170015 31170379 + 0.666667 NA Intergenic Intergenic -23489 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 202.666-4 chr2 13969340 13969935 + 0.666667 NA Intergenic Intergenic 431321 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 125.167-29 chr17 15037544 15037892 + 0.666667 NA intron (NR_135638, intron 1 of 1) intron (NR_135638, intron 1 of 1) 6743 NR_033371 94150 Hs.147654 NR_033371 ENSG00000259944 CDRT7 LINC00025|NCRNA00025 CMT1A duplicated region transcript 7 ncRNA 204-36 chr7 111203747 111204289 + 0.666667 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 112891 NM_018334 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 115.333-95 chr6 141289437 141289629 + 0.666667 NA Intergenic L1MA9|LINE|L1 605719 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 121.667-106 chr9 3978314 3978613 + 0.666667 NA intron (NM_001042413, intron 4 of 10) L1ME4a|LINE|L1 79817 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 158.5-37 chr2 68191406 68191695 + 0.666667 NA intron (NM_000945, intron 2 of 5) Tigger3c|DNA|TcMar-Tigger 33662 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 161-67 chr7 13679483 13679793 + 0.666667 NA Intergenic L1MC1|LINE|L1 306876 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 137-54 chr2 52744226 52744579 + 0.666667 NA Intergenic Intergenic -41787 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 191.334-3 chr12 3283660 3284204 + 0.666667 NA 3' UTR (NM_006675, exon 9 of 9) 3' UTR (NM_006675, exon 9 of 9) 82190 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 137.333-72 chr4 186005045 186005393 + 0.666667 NA Intergenic AluSq|SINE|Alu -48847 NM_001270771 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 269.833-12 chr20 18015620 18016081 + 0.666667 NA Intergenic MER2|DNA|TcMar-Tigger 42066 NM_021220 58495 Hs.661013 NM_021220 ENSG00000125850 OVOL2 CHED|CHED1|CHED2|EUROIMAGE566589|PPCD1|ZNF339 ovo like zinc finger 2 protein-coding 123.333-74 chr3 117786023 117786316 + 0.666667 NA Intergenic L2a|LINE|L2 -95244 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 178-33 chr3 115863927 115864422 + 0.666667 NA intron (NM_001318915, intron 3 of 8) intron (NM_001318915, intron 3 of 8) 40952 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 240.333-13 chr17 67093482 67093876 + 0.666667 NA intron (NM_001330447, intron 31 of 32) L2|LINE|L2 49125 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 118.667-106 chr7 14237999 14238330 + 0.666667 NA intron (NM_001350717, intron 22 of 24) THE1D|LTR|ERVL-MaLR -246739 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 129-76 chr5 122562369 122562613 + 0.666667 NA Intergenic Intergenic 22109 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 137-58 chr2 121262659 121262926 + 0.666667 NA intron (NM_014553, intron 2 of 14) L1MC4a|LINE|L1 22410 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 203.167-31 chr4 148638653 148639153 + 0.666667 NA Intergenic Intergenic -194205 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 180.667-34 chr2 76828284 76828658 + 0.666667 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -157494 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 244.667-27 chr7 80051470 80051876 + 0.666667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -83158 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 118.333-19 chr11 85880542 85880869 + 0.666667 NA intron (NM_001286159, intron 3 of 10) L1MD1|LINE|L1 25604 NM_001286159 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 168.833-12 chr12 15906837 15907337 + 0.666667 NA Intergenic Intergenic -4245 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 240-27 chr3 120114526 120115148 + 0.666667 NA Intergenic Intergenic -20390 NM_001354596 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 127.167-66 chr4 44255549 44255933 + 0.666667 NA intron (NM_198353, intron 1 of 1) L1ME3A|LINE|L1 193068 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 138.333-57 chr2 34330283 34330542 + 0.666667 NA Intergenic Intergenic 263186 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 140.167-21 chr14_GL000225v1_random 125626 126031 + 0.666667 NA NA BSR/Beta|Satellite|Satellite NA NA 190.5-5 chr10 33017072 33017592 + 0.666667 NA Intergenic L1ME4b|LINE|L1 -59102 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 124.833-28 chr16 86129831 86130086 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger -66223 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 142-86 chr7 45572998 45573384 + 0.666667 NA promoter-TSS (NM_001281768) promoter-TSS (NM_001281768) -949 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 118-89 chr4 141716684 141716982 + 0.666667 NA intron (NM_172175, intron 3 of 9) MSTD-int|LTR|ERVL-MaLR 80250 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 126.5-25 chr14 56945760 56945956 + 0.666667 NA Intergenic GA-rich|Low_complexity|Low_complexity 132700 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 116.667-96 chr6 131673946 131674186 + 0.666667 NA intron (NR_133007, intron 7 of 23) intron (NR_133007, intron 7 of 23) 27335 NM_030908 79541 Hs.486488 NM_030908 ENSG00000180658 OR2A4 OR2A10 olfactory receptor family 2 subfamily A member 4 protein-coding 195.5-15 chr14 21373470 21374253 + 0.666667 NA intron (NM_007192, intron 1 of 25) AluSq2|SINE|Alu 10158 NM_007192 11198 Hs.213724 NM_007192 ENSG00000092201 SUPT16H CDC68|FACTP140|SPT16|SPT16/CDC68 SPT16 homolog, facilitates chromatin remodeling subunit protein-coding 148.167-20 chr14 22341417 22341787 + 0.666667 NA Intergenic AluSx|SINE|Alu 91151 NR_148363 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 121.5-119 chrX 7805386 7805646 + 0.666667 NA Intergenic Intergenic -36746 NM_013452 26609 Hs.278906 NM_013452 ENSG00000182583 VCX VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1 variable charge X-linked protein-coding 129-28 chr12 82879693 82879992 + 0.666667 NA intron (NM_152588, intron 2 of 11) intron (NM_152588, intron 2 of 11) 192687 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 217.333-15 chr2 32380953 32381499 + 0.666667 NA intron (NM_016252, intron 3 of 73) intron (NM_016252, intron 3 of 73) 24198 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 167.333-71 chr9 77142547 77142993 + 0.666667 NA Intergenic Intergenic -34675 NM_015186 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 135.167-78 chr5 128739744 128740144 + 0.666667 NA Intergenic Intergenic -201699 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 148.333-78 chr5 10596548 10596932 + 0.666667 NA intron (NM_001164440, intron 1 of 3) L1PA10|LINE|L1 32670 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 139.667-61 chr3 50033542 50033757 + 0.666667 NA intron (NM_001349194, intron 3 of 17) AluSc|SINE|Alu -55270 NR_036627 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA-15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 128-64 chr3 52984892 52985153 + 0.666667 NA intron (NM_016329, intron 1 of 20) Tigger10|DNA|TcMar-Tigger 61051 NM_016329 51460 Hs.343679 NM_016329 ENSG00000163935 SFMBT1 RU1|SFMBT|hSFMBT Scm like with four mbt domains 1 protein-coding 202.5-27 chr9 121145829 121146221 + 0.666667 NA intron (NR_163191, intron 11 of 18) intron (NR_163191, intron 11 of 18) 24255 NM_001369892 11064 Hs.653263 NM_007018 ENSG00000119397 CNTRL CEP1|CEP110|FAN|bA165P4.1 centriolin protein-coding 189.667-15 chr14 48125399 48125836 + 0.666667 NA Intergenic Intergenic -330603 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 291.333-9 chr5 98456661 98457287 + 0.666667 NA Intergenic Intergenic -295735 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 133-22 chr12 55158679 55159031 + 0.666667 NA Intergenic Intergenic 29086 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 137.667-4 chr1 90021573 90021894 + 0.666667 NA intron (NM_001320185, intron 10 of 11) intron (NM_001320185, intron 10 of 11) 26623 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 159-35 chr18 58830414 58830843 + 0.666667 NA intron (NR_146904, intron 1 of 2) intron (NR_146904, intron 1 of 2) 16748 NR_146904 105372147 Hs.210837 NR_146904 ENSG00000267593 LINC01926 - long intergenic non-protein coding RNA 1926 ncRNA 234.333 chr1 177370831 177371590 + 0.666667 NA Intergenic L1PA14|LINE|L1 19624 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 195.5-32 chr5 127810699 127811250 + 0.666667 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 107585 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 140.667-60 chr4 3011146 3011458 + 0.666667 NA intron (NM_001004056, intron 6 of 14) AluJo|SINE|Alu 47731 NM_005307 2868 Hs.32959 NM_005307 ENSG00000125388 GRK4 GPRK2L|GPRK4|GRK4a|IT11 G protein-coupled receptor kinase 4 protein-coding 188.167 chr1 4787904 4788468 + 0.666667 NA 3' UTR (NM_018836, exon 6 of 6) 3' UTR (NM_018836, exon 6 of 6) 133577 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 113.5-86 chr8 27643033 27643412 + 0.666667 NA intron (NM_182826, intron 1 of 5) intron (NM_182826, intron 1 of 5) 9162 NM_182826 51435 Hs.128856 NM_016240 ENSG00000168077 SCARA3 APC7|CSR|CSR1|MSLR1|MSRL1 scavenger receptor class A member 3 protein-coding 151.833 chr1 118221837 118222289 + 0.666667 NA Intergenic Intergenic -36835 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 134.167-57 chr3 94557240 94557629 + 0.666667 NA Intergenic L1M4|LINE|L1 -380829 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 135.333-32 chr17 67571760 67572019 + 0.666667 NA intron (NM_181671, intron 4 of 9) MLT1E1A|LTR|ERVL-MaLR -100304 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 114.5-62 chr22 21780230 21780504 + 0.666667 NA intron (NM_002745, intron 6 of 8) intron (NM_002745, intron 6 of 8) -44573 NM_013313 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 114.333-70 chr2 128731670 128731968 + 0.666667 NA Intergenic AluY|SINE|Alu -132781 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 202.667-35 chr4 21897160 21897602 + 0.666667 NA intron (NM_147182, intron 1 of 8) intron (NM_147182, intron 1 of 8) -44193 NR_002813 359822 Hs.354058 NR_002813 ENSG00000280650 KCNIP4-IT1 NCRNA00099|UM9(5)|UM9-5 KCNIP4 intronic transcript 1 ncRNA 141-45 chr2 154827522 154827936 + 0.666667 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 129034 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 168.667-63 chr5 72336105 72336543 + 0.666667 NA intron (NM_001284405, intron 5 of 8) L2b|LINE|L2 15951 NM_024754 79810 Hs.126906 NM_024754 ENSG00000049883 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 185.334-2 chr11 104447066 104447700 + 0.666667 NA Intergenic L1PA11|LINE|L1 161919 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 221.333-3 chr11 13273044 13273680 + 0.666667 NA Intergenic L1M5|LINE|L1 -3290 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 118-25 chr12 71886935 71887264 + 0.666667 NA intron (NM_022771, intron 5 of 17) intron (NM_022771, intron 5 of 17) -36116 NR_024072 729633 Hs.716256 NR_024072 MRS2P2 - MRS2 pseudogene 2 pseudo 282-7 chr11 27389980 27390588 + 0.666667 NA intron (NM_018490, intron 4 of 17) intron (NM_018490, intron 4 of 17) -27036 NM_080654 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 144.334-4 chr5 60428454 60428983 + 0.666667 NA intron (NM_001364599, intron 1 of 16) MIRb|SINE|MIR -56055 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 143.167-41 chr2 196403243 196403527 + 0.666667 NA intron (NM_020760, intron 2 of 28) intron (NM_020760, intron 2 of 28) -41208 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 163.667-72 chr9 27766894 27767488 + 0.666667 NA Intergenic MER20|DNA|hAT-Charlie -193325 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 184.333-43 chr4 29798256 29798588 + 0.666667 NA Intergenic Intergenic 584130 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 160.833-20 chr14 52955900 52956196 + 0.666667 NA Intergenic L1MB7|LINE|L1 -4951 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 149-16 chr11 73862478 73862906 + 0.666667 NA intron (NR_134658, intron 5 of 6) AluJr|SINE|Alu -14007 NM_001267806 80227 Hs.525017 NM_025155 ENSG00000175575 PAAF1 PAAF|Rpn14|WDR71 proteasomal ATPase associated factor 1 protein-coding 132.667-68 chr4 32256768 32257199 + 0.666667 NA Intergenic Intergenic -94055 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 172.667-70 chr6 141980733 141981132 + 0.666667 NA Intergenic Intergenic 107867 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 175.333-55 chr5 161789863 161790371 + 0.666667 NA Intergenic Intergenic -57074 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 167.667-14 chr11 9581938 9582293 + 0.666667 NA intron (NM_003390, intron 6 of 10) intron (NM_003390, intron 6 of 10) 7428 NM_001143976 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 150-40 chr2 133322280 133322676 + 0.666667 NA intron (NM_207481, intron 3 of 17) MIRb|SINE|MIR 56283 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 159.5-35 chr3 95444816 95445247 + 0.666667 NA Intergenic Intergenic 238162 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 223.667-14 chr18 10298248 10298843 + 0.666667 NA Intergenic MIRc|SINE|MIR 115825 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 199.333-4 chr10 31172722 31173199 + 0.666667 NA Intergenic Intergenic -14923 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 129.167-14 chr11 28352439 28352655 + 0.666667 NA Intergenic Intergenic 125001 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 162.333-72 chr7 154420381 154420737 + 0.666667 NA intron (NR_157196, intron 1 of 25) L1MA7|LINE|L1 115400 NR_157196 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 207-31 chr22 45480561 45480980 + 0.666667 NA Intergenic MSTA|LTR|ERVL-MaLR -22113 NM_006487 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 125.5-89 chrX 58000494 58000763 + 0.666667 NA Intergenic L1MA1|LINE|L1 -89995 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 286.5-8 chr2 178640227 178640703 + 0.666667 NA intron (NM_001256850, intron 171 of 312) intron (NM_001256850, intron 171 of 312) 117274 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 196.333-13 chr15 94987254 94987812 + 0.666667 NA Intergenic L1MD1|LINE|L1 132170 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 184.333-5 chr11 81605431 81605889 + 0.666667 NA Intergenic MER45C|DNA|hAT-Tip100 285176 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 127.333-17 chr11 35675179 35675519 + 0.666667 NA intron (NM_017583, intron 1 of 4) MLT1J|LTR|ERVL-MaLR 12574 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 253.334-2 chr16 9493421 9494290 + 0.666667 NA Intergenic Intergenic -38350 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 156-88 chr8 96723182 96723461 + 0.666667 NA intron (NM_016134, intron 1 of 7) intron (NM_016134, intron 1 of 7) 78079 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 191-45 chr4 67247346 67247802 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR 174426 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 137-11 chr10 58308575 58308893 + 0.666667 NA Intergenic L1ME3D|LINE|L1 20945 NR_158219 112268068 Hs.586671 NR_158219 LOC112268068 - uncharacterized LOC112268068 ncRNA 179.5-10 chr16 9640459 9640891 + 0.666667 NA Intergenic L1M4|LINE|L1 -185170 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 213.5-33 chr6 35569408 35569821 + 0.666667 NA Intergenic Intergenic -56718 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 160.167-45 chr3 94964891 94965177 + 0.666667 NA intron (NR_015400, intron 2 of 7) L1M3|LINE|L1 26771 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 190.333 chr1 41843348 41843680 + 0.666667 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 75408 NM_024503 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 149.333-89 chr7 108932941 108933233 + 0.666667 NA Intergenic Intergenic -48500 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 192.667-13 chr12 27016340 27016648 + 0.666667 NA Intergenic AluJo|SINE|Alu -2110 NM_016551 51768 Hs.438641 NM_016551 ENSG00000064115 TM7SF3 - transmembrane 7 superfamily member 3 protein-coding 205.667-54 chr7 24194852 24195440 + 0.666667 NA Intergenic Intergenic -89044 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 209-8 chr10 51863308 51863776 + 0.666667 NA intron (NM_001098512, intron 4 of 17) MSTD|LTR|ERVL-MaLR -163947 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 312-2 chr12 34417910 34418691 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 395804 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 211.5-28 chr5 105633189 105633535 + 0.666667 NA Intergenic Intergenic 533888 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 131.5-67 chr5 155218086 155218292 + 0.666667 NA Intergenic Ricksha|DNA|MULE-MuDR 204434 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 161.167-7 chr10 104781076 104781361 + 0.666667 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -115002 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 138.167-76 chr8 88280349 88280710 + 0.666667 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 46954 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 194.667-21 chr14 67358727 67359396 + 0.666667 NA intron (NM_015994, intron 1 of 8) L2c|LINE|L2 743 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 151.333-89 chr8 115592238 115592770 + 0.666667 NA intron (NM_001282902, intron 3 of 5) intron (NM_001282902, intron 3 of 5) 75509 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 123.667-100 chr7 48171200 48171437 + 0.666667 NA promoter-TSS (NM_152701) promoter-TSS (NM_152701) -140 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 156.667-84 chr8 122304803 122305129 + 0.666667 NA Intergenic Intergenic 263678 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 209.667-42 chrX 73347148 73347535 + 0.666667 NA Intergenic L1PA15|LINE|L1 -99913 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 302.167-7 chr4 65692995 65693789 + 0.666667 NA TTS (NR_034138) TTS (NR_034138) -22897 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 219-12 chr2 48581996 48582606 + 0.666667 NA exon (NM_001198594, exon 1 of 8) exon (NM_001198594, exon 1 of 8) 1714 NM_001198594 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 154.167-54 chr5 24177453 24177698 + 0.666667 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 226227 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 123.667-3 chr1 39756648 39757096 + 0.666667 NA TTS (NR_036543) TTS (NR_036543) 14476 NM_022120 64064 Hs.472491 NM_022120 ENSG00000198754 OXCT2 FKSG25|SCOTT 3-oxoacid CoA-transferase 2 protein-coding 115.667-6 chr1 97706397 97706702 + 0.666667 NA intron (NM_000110, intron 5 of 22) L1MC1|LINE|L1 -90372 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 195-23 chr2 190128019 190128441 + 0.666667 NA Intergenic Intergenic -9547 NM_001042521 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 208.833 chr1 36109784 36110365 + 0.666667 NA intron (NM_005202, intron 2 of 3) AluY|SINE|Alu 15148 NM_001294347 1296 Hs.353001 NM_005202 ENSG00000171812 COL8A2 FECD|FECD1|PPCD|PPCD2 collagen type VIII alpha 2 chain protein-coding 180.333-12 chr10 97502917 97503188 + 0.666667 NA intron (NM_024954, intron 1 of 2) AluJr|SINE|Alu 4128 NM_024954 80019 Hs.500724 NM_024954 ENSG00000165886 UBTD1 - ubiquitin domain containing 1 protein-coding 146.833-21 chr15 94355941 94356267 + 0.666667 NA 5' UTR (NM_001159644, exon 1 of 10) 5' UTR (NM_001159644, exon 1 of 10) 174 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 175.833-22 chr2 112801478 112801812 + 0.666667 NA Intergenic L3|LINE|CR1 -16247 NM_000575 3552 Hs.1722 NM_000575 ENSG00000115008 IL1A IL-1A|IL1|IL1-ALPHA|IL1F1 interleukin 1 alpha protein-coding 122.833-42 chr19 32511561 32511790 + 0.666667 NA Intergenic L1M4b|LINE|L1 -69515 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 138.834-3 chr7 68467180 68467751 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 447212 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 117-82 chr4 103525043 103525337 + 0.666667 NA Intergenic Intergenic 100148 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 243.666-4 chr2 178317011 178317726 + 0.666667 NA intron (NM_001201480, intron 3 of 25) intron (NM_001201480, intron 3 of 25) -2874 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 240.333-16 chr22 26868890 26869595 + 0.666667 NA intron (NR_146604, intron 3 of 5) intron (NR_146604, intron 3 of 5) 9031 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 117.667-43 chr14 71499148 71499546 + 0.666667 NA intron (NM_001284247, intron 1 of 23) AluJb|SINE|Alu 11486 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 182.5-24 chr20 3972196 3972541 + 0.666667 NA intron (NM_001134337, intron 1 of 5) L1MD1|LINE|L1 43190 NM_001134338 11237 Hs.547576 NM_007219 ENSG00000101236 RNF24 G1L ring finger protein 24 protein-coding 122.167-44 chr3 32928413 32928706 + 0.666667 NA Intergenic L1PB2|LINE|L1 -23085 NM_005508 1233 Hs.184926 NM_005508 ENSG00000183813 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 C-C motif chemokine receptor 4 protein-coding 139.333-56 chr21 28391164 28391413 + 0.666667 NA Intergenic L1PREC2|LINE|L1 -148030 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 193.333-51 chr7 134138712 134139061 + 0.666667 NA intron (NM_001365700, intron 2 of 15) MIRc|SINE|MIR 11546 NM_144648 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 192.5-5 chr10 75433853 75434293 + 0.666667 NA intron (NM_001305581, intron 1 of 6) Charlie29a|DNA|hAT-Charlie 2449 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 172-40 chr20 18819599 18820215 + 0.666667 NA intron (NR_161343, intron 2 of 2) intron (NR_161343, intron 2 of 2) 6124 NM_178483 140856 Hs.112794 NM_178483 ENSG00000132631 SCP2D1 C20orf79|HSD22|dJ1068E13.2 SCP2 sterol binding domain containing 1 protein-coding 147-49 chr3 22014232 22014559 + 0.666667 NA Intergenic HAL1ME|LINE|L1 57256 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 139.334-4 chr2 16777866 16778468 + 0.666667 NA Intergenic MIRb|SINE|MIR -112333 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 150.333-62 chr22 22826569 22826956 + 0.666667 NA Intergenic MER4B|LTR|ERV1 3986 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 139-23 chr18 13572213 13572574 + 0.666667 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -38721 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 186.333-20 chr14 49206980 49207434 + 0.666667 NA Intergenic Intergenic 379173 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 195.5-31 chr4 64382235 64382713 + 0.666667 NA intron (NM_001363796, intron 1 of 11) L1MA4|LINE|L1 26976 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 172.833-49 chr7 3261044 3261450 + 0.666667 NA Intergenic L1MC1|LINE|L1 -40005 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 170.5-72 chrX 136495133 136495427 + 0.666667 NA Intergenic Intergenic -1799 NM_001163280 27336 Hs.204475 NM_014500 ENSG00000102241 HTATSF1 TAT-SF1|TATSF1|dJ196E23.2 HIV-1 Tat specific factor 1 protein-coding 137.667-87 chr6 146219889 146220176 + 0.666667 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 190834 NM_001278067 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 125.833-82 chr7 106794843 106795143 + 0.666667 NA Intergenic Intergenic -70289 NM_001282426 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 124.5-63 chr5 175550100 175550391 + 0.666667 NA Intergenic MER57A-int|LTR|ERV1 71685 NM_001322977 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 SLC56A1|TCC sideroflexin 1 protein-coding 174-54 chr6 136012864 136013177 + 0.666667 NA intron (NM_018945, intron 2 of 12) intron (NM_018945, intron 2 of 12) 59807 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 171.833-14 chr13 82101084 82101372 + 0.666667 NA Intergenic L1MD2|LINE|L1 -874245 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 151.833-17 chr14 86854513 86855046 + 0.666667 NA Intergenic L2a|LINE|L2 -50999 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 213.333-42 chr7 106910135 106910488 + 0.666667 NA Intergenic L1ME4a|LINE|L1 44832 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 117.667-91 chr4 65173097 65173367 + 0.666667 NA Intergenic Intergenic -168732 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 132.667-92 chr8 68548161 68548492 + 0.666667 NA intron (NR_146186, intron 7 of 12) L1ME2|LINE|L1 -216835 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 264.667-18 chr22 26153961 26154502 + 0.666667 NA Intergenic Intergenic -15231 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 201.667-31 chr5 73089277 73089642 + 0.666667 NA 3' UTR (NM_138782, exon 26 of 26) 3' UTR (NM_138782, exon 26 of 26) -31116 NM_173490 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 234.5-4 chr10 117355156 117355545 + 0.666667 NA intron (NM_173791, intron 1 of 4) intron (NM_173791, intron 1 of 4) 20090 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 175.667-60 chr6 136951881 136952237 + 0.666667 NA Intergenic Intergenic 29758 NM_001008783 340146 Hs.369703 NM_001008783 ENSG00000182747 SLC35D3 FRCL1 solute carrier family 35 member D3 protein-coding 193.334 chr18 65772679 65773318 + 0.666667 NA intron (NM_001362438, intron 2 of 11) intron (NM_001362438, intron 2 of 11) 21986 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 121-22 chr12 98148269 98148669 + 0.666667 NA Intergenic Intergenic -153021 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 147.667-14 chr11 25896494 25896849 + 0.666667 NA Intergenic Intergenic -292452 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 137.167-20 chr14 72441911 72442448 + 0.666667 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -74641 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 153.667-13 chr11 21474035 21474539 + 0.666667 NA intron (NM_201551, intron 15 of 18) L2a|LINE|L2 -718798 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 159.833-26 chr2 49392845 49393416 + 0.666667 NA Intergenic L1MA6|LINE|L1 -238603 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 142.833-58 chr5 52287413 52287686 + 0.666667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 279518 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 210-5 chr13 38907708 38908200 + 0.666667 NA Intergenic MER6|DNA|TcMar-Tigger -80363 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 156.667-35 chr15 34046644 34046950 + 0.666667 NA 5' UTR (NM_012125, exon 2 of 3) 5' UTR (NM_012125, exon 2 of 3) -7593 NM_020371 57099 Hs.555966 NM_020371 ENSG00000169857 AVEN PDCD12 apoptosis and caspase activation inhibitor protein-coding 152.167-9 chr10 62590475 62591021 + 0.666667 NA intron (NM_199452, intron 1 of 6) intron (NM_199452, intron 1 of 6) 70300 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 126-44 chr2 178396534 178396843 + 0.666667 NA 3' UTR (NM_001201481, exon 24 of 24) 3' UTR (NM_001201481, exon 24 of 24) -16971 NR_110204 101927027 Hs.715694 NR_110204 ENSG00000223960 CHROMR CHROME|PRKRA-AS1 cholesterol induced regulator of metabolism RNA ncRNA 129.333-109 chr9 92338583 92338841 + 0.666667 NA intron (NM_001286969, intron 2 of 6) MLT1F|LTR|ERVL-MaLR 12759 NM_001012267 401541 Hs.713775 NM_001012267 ENSG00000188312 CENPP CENP-P centromere protein P protein-coding 127.333-106 chr7 82291923 82292223 + 0.666667 NA intron (NM_000722, intron 3 of 38) HAL1|LINE|L1 151704 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 119.167-93 chr8 27537904 27538082 + 0.666667 NA intron (NM_001979, intron 13 of 18) MERX|DNA|TcMar-Tigger 46850 NM_001256484 2053 Hs.212088 NM_001979 ENSG00000120915 EPHX2 ABHD20|CEH|SEH epoxide hydrolase 2 protein-coding 114-88 chr7 3836245 3836502 + 0.666667 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -293312 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 132.833-51 chr4 116835043 116835460 + 0.666667 NA Intergenic L1PA12|LINE|L1 250325 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 172.667-9 chr1 244025664 244026111 + 0.666667 NA intron (NR_033883, intron 7 of 11) AluJo|SINE|Alu -23052 NM_001278196 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 132.333-8 chr1 192332148 192332446 + 0.666667 NA intron (NM_001039152, intron 1 of 4) HAL1ME|LINE|L1 15305 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 260.667-7 chr18 21449516 21450077 + 0.666667 NA exon (NM_001142966, exon 12 of 33) exon (NM_001142966, exon 12 of 33) 150908 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 127.333-38 chr15 95906722 95907184 + 0.666667 NA Intergenic Intergenic 220888 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 232.667-5 chr11 121625515 121626074 + 0.666667 NA intron (NM_003105, intron 46 of 47) intron (NM_003105, intron 46 of 47) 173480 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 154.333-36 chr2 15389000 15389287 + 0.666667 NA intron (NR_052013, intron 28 of 50) intron (NR_052013, intron 28 of 50) 172191 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 228-12 chr14 101845033 101845582 + 0.666667 NA intron (NM_001352916, intron 2 of 13) MIRc|SINE|MIR 35444 NM_001352912 5527 Hs.368264 NM_002719 ENSG00000078304 PPP2R5C B56G|B56gamma|PR61G protein phosphatase 2 regulatory subunit B'gamma protein-coding 117.667-115 chr7 27819341 27819577 + 0.666667 NA intron (NM_001362794, intron 15 of 16) MER119|DNA|hAT-Charlie 79364 NM_001079864 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 191.5-41 chr5 105111043 105111640 + 0.666667 NA Intergenic L1MCc|LINE|L1 11867 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 214.5-41 chr8 124035980 124036619 + 0.666667 NA intron (NM_001039112, intron 19 of 40) intron (NM_001039112, intron 19 of 40) 4483 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 138.833-68 chr5 84512747 84513001 + 0.666667 NA Intergenic L1PA13|LINE|L1 -127994 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 139.667-85 chr7 26488980 26489280 + 0.666667 NA intron (NR_148500, intron 2 of 5) MER113|DNA|hAT-Charlie 49695 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 143-33 chr18 12800621 12800965 + 0.666667 NA intron (NM_080422, intron 8 of 9) intron (NM_080422, intron 8 of 9) 40169 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 183.167-3 chr1 110583239 110583556 + 0.666667 NA Intergenic L2a|LINE|L2 22961 NM_004974 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 121.667-35 chr17 35622100 35622369 + 0.666667 NA intron (NM_001030006, intron 5 of 21) intron (NM_001030006, intron 5 of 21) 34912 NM_001282 163 Hs.514819 NM_001282 ENSG00000006125 AP2B1 ADTB2|AP105B|AP2-BETA|CLAPB1 adaptor related protein complex 2 subunit beta 1 protein-coding 216.167-22 chr4 131077977 131078550 + 0.666667 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat -686575 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 127-3 chr1 217240639 217240914 + 0.666667 NA Intergenic Intergenic -103074 NM_001243511 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 164.333-68 chr6 56016949 56017231 + 0.666667 NA Intergenic Intergenic 74572 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 130.5-59 chr4 60141713 60141908 + 0.666667 NA Intergenic Intergenic -780809 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 160.333-46 chr4 75376173 75376566 + 0.666667 NA Intergenic MLT1A|LTR|ERVL-MaLR 22293 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 140.333-20 chr13 113239126 113239556 + 0.666667 NA intron (NM_001008895, intron 9 of 19) intron (NM_001008895, intron 9 of 19) -23579 NR_107042 102465874 NR_107042 ENSG00000277942 MIR8075 hsa-mir-8075 microRNA 8075 ncRNA 190.833-15 chr14 101170122 101170523 + 0.666667 NA Intergenic Intergenic 49466 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 138-26 chr12 85780322 85780603 + 0.666667 NA Intergenic Intergenic 55947 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 122.833-44 chr2 32608386 32608845 + 0.666667 NA intron (NM_016252, intron 72 of 73) AluSq2|SINE|Alu -19435 NM_001193509 55622 Hs.468125 NM_017735 ENSG00000018699 TTC27 - tetratricopeptide repeat domain 27 protein-coding 196.667-32 chr21 25422194 25422658 + 0.666667 NA intron (NR_024027, intron 3 of 4) intron (NR_024027, intron 3 of 4) 9275 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 123-15 chr12 45110419 45110719 + 0.666667 NA Intergenic Intergenic -45158 NR_026583 83956 Hs.650500 NM_032032 RACGAP1P FKSG42 Rac GTPase activating protein 1 pseudogene pseudo 263.833-13 chr7 64800270 64800980 + 0.666667 NA intron (NM_001367573, intron 2 of 3) L1PREC2|LINE|L1 6197 NM_001160183 7697 Hs.184080 NM_006524 ENSG00000197008 ZNF138 pHZ-32 zinc finger protein 138 protein-coding 132-85 chr6 122721698 122722138 + 0.666667 NA intron (NM_181795, intron 4 of 4) intron (NM_181795, intron 4 of 4) -27283 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 204.667-16 chr12 90805838 90806435 + 0.666667 NA Intergenic Intergenic -111887 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 171-60 chr8 46398433 46398819 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 219017 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 188.5-43 chr4 83069124 83069476 + 0.666667 NA intron (NM_016129, intron 9 of 9) L2b|LINE|L2 34117 NM_016129 51138 Hs.190384 NM_016129 ENSG00000138663 COPS4 CSN4|SGN4 COP9 signalosome subunit 4 protein-coding 113.5-85 chr7 159216268 159216644 + 0.666667 NA Intergenic Intergenic -71499 NM_001304522 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 152.167-21 chr16 62345738 62346165 + 0.666667 NA Intergenic L1M5|LINE|L1 -309513 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 128.833-16 chr10 59194758 59194982 + 0.666667 NA intron (NM_001143774, intron 1 of 4) intron (NM_001143774, intron 1 of 4) 17403 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 180.333 chr1 58706046 58706455 + 0.666667 NA Intergenic L1MEc|LINE|L1 -6188 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 221.333-6 chr12 62415323 62415671 + 0.666667 NA non-coding (NR_147078, exon 22 of 22) non-coding (NR_147078, exon 22 of 22) -51329 NM_001278469 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 202.333-37 chr5 127557556 127557906 + 0.666667 NA Intergenic L1ME3|LINE|L1 40091 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 205.833-32 chr8 84334638 84335113 + 0.666667 NA intron (NM_001354320, intron 2 of 9) LTR78|LTR|ERV1 -80609 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 201.833-23 chr7 115919249 115919615 + 0.666667 NA Intergenic L2a|LINE|L2 48881 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 117.667-50 chr17 11909401 11909704 + 0.666667 NA intron (NM_001372, intron 61 of 68) MER74B|LTR|ERVL 26650 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 133-102 chr9 106135118 106135432 + 0.666667 NA Intergenic Intergenic 440734 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 133.167-46 chr4 107265551 107266049 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -229487 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 141.333-42 chr17 71169239 71169502 + 0.666667 NA intron (NR_104152, intron 2 of 3) AluSx|SINE|Alu 32809 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 169-33 chr3 62480143 62480684 + 0.666667 NA intron (NM_183393, intron 19 of 26) intron (NM_183393, intron 19 of 26) -106863 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 172-34 chr18 10597563 10597866 + 0.666667 NA Intergenic Intergenic 28706 NR_146509 102724470 NR_146509 LINC01887 - long intergenic non-protein coding RNA 1887 ncRNA 218.333-7 chr10 94260441 94260854 + 0.666667 NA intron (NM_001165979, intron 12 of 31) intron (NM_001165979, intron 12 of 31) 26423 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 170.333-36 chr2 17327552 17327988 + 0.666667 NA Intergenic Intergenic 190670 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 132.333-94 chr6 149222659 149223084 + 0.666667 NA intron (NM_001292035, intron 2 of 6) intron (NM_001292035, intron 2 of 6) 4945 NM_001292035 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 128.667-17 chr10 61329883 61330098 + 0.666667 NA Intergenic L1MC1|LINE|L1 -122649 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 210.5-47 chr7 30161982 30162579 + 0.666667 NA 3' UTR (NM_152793, exon 3 of 3) 3' UTR (NM_152793, exon 3 of 3) 27294 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 188.5-45 chr5 117713196 117713555 + 0.666667 NA Intergenic LTR76|LTR|ERV1 -16986 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 139.5-10 chr10 69972370 69972757 + 0.666667 NA Intergenic MIRc|SINE|MIR -80283 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 178.5-18 chr12 8824021 8824609 + 0.666667 NA intron (NM_144670, intron 3 of 35) intron (NM_144670, intron 3 of 35) 1694 NM_144670 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 128.333-110 chr6 168215876 168216337 + 0.666667 NA Intergenic Tigger13a|DNA|TcMar-Tigger 10411 NR_134590 105378137 Hs.549668 NR_134590 ENSG00000237987 LOC105378137 - uncharacterized LOC105378137 ncRNA 114.834-2 chr13 35486146 35486657 + 0.666667 NA intron (NM_001204197, intron 1 of 17) MIRc|SINE|MIR 9652 NM_001204197 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 120.167-46 chr20 14886422 14886687 + 0.666667 NA intron (NR_110318, intron 1 of 1) L2a|LINE|L2 42964 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 115-39 chr2 146983649 146984043 + 0.666667 NA Intergenic AluSx1|SINE|Alu 396789 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 127.167-94 chr8 139476215 139476537 + 0.666667 NA Intergenic Intergenic 226747 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 153.167-7 chr10 72482471 72482838 + 0.666667 NA intron (NM_001195519, intron 1 of 6) L3|LINE|CR1 41332 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 150-64 chr5 16239758 16240085 + 0.666667 NA Intergenic L1MA4|LINE|L1 59680 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 119.833-26 chr14 36092095 36092459 + 0.666667 NA intron (NR_073454, intron 1 of 2) intron (NR_073454, intron 1 of 2) 21850 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 207.833-19 chr2 69797171 69797760 + 0.666667 NA intron (NM_001320700, intron 3 of 12) HUERS-P3-int|LTR|ERV1 -32195 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 164.667-32 chr18 389195 389507 + 0.666667 NA intron (NM_130386, intron 2 of 9) AluY|SINE|Alu 111350 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 148.333-9 chr1 188835116 188835557 + 0.666667 NA Intergenic Intergenic 1391708 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 195.667-28 chr3 180769336 180769796 + 0.666667 NA intron (NR_109986, intron 4 of 13) intron (NR_109986, intron 4 of 13) -90077 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 127.167-50 chr21 18994435 18994735 + 0.666667 NA Intergenic AluSq|SINE|Alu -234773 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 164.833-27 chr21 30075799 30076236 + 0.666667 NA Intergenic THE1B-int|LTR|ERVL-MaLR 90788 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 161.833-27 chr22 27567458 27567941 + 0.666667 NA Intergenic Intergenic 234057 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 136.667-48 chr2 178474684 178474939 + 0.666667 NA intron (NM_181342, intron 2 of 3) AluJb|SINE|Alu 3789 NM_001135212 51661 Hs.410378 NM_016105 ENSG00000079150 FKBP7 FKBP23|PPIase FKBP prolyl isomerase 7 protein-coding 219-28 chr7 88733468 88734024 + 0.666667 NA Intergenic L1MA3|LINE|L1 -25954 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 133-24 chr13 31796911 31797161 + 0.666667 NA intron (NM_130806, intron 16 of 17) Tigger4b|DNA|TcMar-Tigger -49747 NR_027062 196549 Hs.507667 NM_145293 EEF1DP3 - eukaryotic translation elongation factor 1 delta pseudogene 3 pseudo 120.833-39 chr21 28445404 28445802 + 0.666667 NA Intergenic Intergenic -93715 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 124.167-73 chr5 86366673 86367019 + 0.666667 NA Intergenic Intergenic 84402 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 139.167-52 chr3 2374481 2374744 + 0.666667 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 135783 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 143-6 chr1 190524781 190525176 + 0.666667 NA Intergenic Intergenic 46427 NR_110717 101929120 Hs.602301 NR_110716 LINC01351 - long intergenic non-protein coding RNA 1351 ncRNA 130.167-14 chr11 93454001 93454284 + 0.666667 NA Intergenic L1MD1|LINE|L1 89249 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 188-3 chr1 192353666 192354066 + 0.666667 NA intron (NM_001039152, intron 4 of 4) intron (NM_001039152, intron 4 of 4) 36874 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 115.5-12 chr10 18322088 18322286 + 0.666667 NA intron (NM_000724, intron 1 of 12) intron (NM_000724, intron 1 of 12) -18522 NM_201590 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 119-21 chr11 106298607 106298896 + 0.666667 NA Intergenic Intergenic 47344 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 200-46 chr3 73715873 73716428 + 0.666667 NA Intergenic L2a|LINE|L2 -91209 NM_015009 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 162.167-17 chr18 3633736 3634254 + 0.666667 NA intron (NM_001242761, intron 7 of 11) L1ME3G|LINE|L1 30258 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 137-96 chr8 121819642 121819957 + 0.666667 NA Intergenic MLT1K|LTR|ERVL-MaLR -178359 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 119.833-80 chr7 90021387 90021666 + 0.666667 NA intron (NR_110029, intron 2 of 2) HAL1|LINE|L1 -97874 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 194.333-22 chr20 61876402 61876916 + 0.666667 NA intron (NM_001252339, intron 6 of 14) LTR75_1|LTR|ERV1 77003 NR_031658 100302168 NR_031658 ENSG00000284193 MIR1257 MIRN1257|hsa-mir-1257 microRNA 1257 ncRNA 181.667-6 chr1 152088461 152088901 + 0.666667 NA intron (NM_001008536, intron 1 of 2) intron (NM_001008536, intron 1 of 2) 383 NM_001008536 126637 Hs.546477 NM_001008536 ENSG00000182898 TCHHL1 S100A17|THHL1 trichohyalin like 1 protein-coding 225-42 chrX 72239868 72240375 + 0.666667 NA intron (NM_001170747, intron 3 of 3) intron (NM_001170747, intron 3 of 3) -1094 NM_017669 54821 Hs.47558 NM_017669 ENSG00000186871 ERCC6L PICH|RAD26L ERCC excision repair 6 like, spindle assembly checkpoint helicase protein-coding 128.167-52 chr3 78137182 78137614 + 0.666667 NA Intergenic MER50|LTR|ERV1 -88435 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 231.833-13 chr3 178136038 178136450 + 0.666667 NA Intergenic MIR|SINE|MIR -282957 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 121.333-47 chr2 53498489 53498830 + 0.666667 NA Intergenic Intergenic -269124 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 131.667-27 chr12 65819346 65819806 + 0.666667 NA intron (NR_026825, intron 1 of 1) L3|LINE|CR1 -4884 NM_001300919 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 128.667-13 chr1 248905036 248905357 + 0.666667 NA Intergenic L4_C_Mam|LINE|RTE-X -1039 NM_170725 267002 Hs.602037 NM_170725 ENSG00000185220 PGBD2 - piggyBac transposable element derived 2 protein-coding 121-25 chr14 58995637 58995831 + 0.666667 NA intron (NR_110547, intron 4 of 5) L1M4a1|LINE|L1 167446 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 182.334-3 chr12 120827534 120828091 + 0.666667 NA intron (NM_139015, intron 1 of 10) AluSx|SINE|Alu 76546 NM_139015 121665 Hs.507087 NM_139015 ENSG00000157837 SPPL3 IMP2|MDHV1887|PRO4332|PSH1|PSL4 signal peptide peptidase like 3 protein-coding 150.333-104 chr9 31207769 31208217 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 173497 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 268-12 chr2 167369186 167369657 + 0.666667 NA Intergenic Intergenic 182049 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 183-54 chr8 88787968 88788474 + 0.666667 NA Intergenic Intergenic -460738 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 121.667-60 chr22 30156246 30156534 + 0.666667 NA intron (NM_001329457, intron 11 of 11) intron (NM_001329457, intron 11 of 11) 75926 NM_001329458 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 134-19 chr10 90272522 90272895 + 0.666667 NA Intergenic Intergenic 268097 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 197-4 chr1 188983202 188983607 + 0.666667 NA Intergenic L1PA8A|LINE|L1 1492606 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 322-5 chr3 42271923 42272457 + 0.666667 NA Intergenic LTR34|LTR|ERV1 -6005 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 175.666-2 chr18 66182004 66182526 + 0.666667 NA Intergenic L1MC3|LINE|L1 421825 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 166.333-52 chr3 182748884 182749278 + 0.666667 NA Intergenic Intergenic -44423 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 259.667 chr10 44264211 44264715 + 0.666667 NA Intergenic Intergenic -28287 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 145.833-38 chr2 35981491 35981901 + 0.666667 NA Intergenic Intergenic 373874 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 185.333-42 chr3 168155448 168155885 + 0.666667 NA Intergenic L1PB4|LINE|L1 -59742 NM_001308155 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 209.167-23 chr3 97034636 97035162 + 0.666667 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 220305 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 233.167-15 chr17 13952078 13952689 + 0.666667 NA Intergenic Intergenic -72115 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 117.333-16 chr11 21993796 21994061 + 0.666667 NA Intergenic Intergenic -199157 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 128.667-85 chr4 79336541 79336901 + 0.666667 NA Intergenic Intergenic -10660 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 172.667-32 chr17 57536272 57536672 + 0.666667 NA intron (NM_001322250, intron 7 of 13) intron (NM_001322250, intron 7 of 13) -12875 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 195-24 chr20 45072157 45072584 + 0.666667 NA intron (NM_001352385, intron 11 of 11) intron (NM_001352385, intron 11 of 11) 28757 NM_002251 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 133.333-59 chr2 198891827 198892218 + 0.666667 NA Intergenic L1PA11|LINE|L1 -516925 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 172.333-7 chr10 17176575 17176904 + 0.666667 NA intron (NM_004412, intron 1 of 10) intron (NM_004412, intron 1 of 10) 24933 NM_001351219 1787 Hs.351665 NM_004412 ENSG00000107614 TRDMT1 DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1 tRNA aspartic acid methyltransferase 1 protein-coding 149.167 chr1 107037013 107037348 + 0.666667 NA Intergenic Intergenic -19494 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 228.167-25 chr8 38139377 38139848 + 0.666667 NA 3' UTR (NM_001282272, exon 15 of 15) 3' UTR (NM_001282272, exon 15 of 15) 11340 NM_000349 6770 Hs.521535 NM_000349 ENSG00000147465 STAR STARD1 steroidogenic acute regulatory protein protein-coding 153.5-4 chr1 111379893 111380386 + 0.666667 NA Intergenic Intergenic 9712 NR_029429 441897 Hs.568387 NR_029429 ENSG00000227179 PGCP1 - progastricsin pseudogene 1 pseudo 243.5-20 chr3 191673255 191673693 + 0.666667 NA Intergenic AluYm1|SINE|Alu 212311 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 130.333-23 chr12 12066166 12066507 + 0.666667 NA intron (NM_001370268, intron 2 of 6) intron (NM_001370268, intron 2 of 6) -4603 NM_138723 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 150.667-47 chr2 22514921 22515560 + 0.666667 NA Intergenic Intergenic -21239 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 145.333-76 chr6 124889471 124889751 + 0.666667 NA Intergenic MER3|DNA|hAT-Charlie -72934 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 124.833-86 chr8 48732157 48732373 + 0.666667 NA intron (NM_024593, intron 1 of 5) intron (NM_024593, intron 1 of 5) 3003 NM_001363974 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 210.333-3 chr1 221188291 221188867 + 0.666667 NA Intergenic Tigger13a|DNA|TcMar-Tigger 147717 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 205.833-10 chr12 72342492 72343125 + 0.666667 NA intron (NM_013381, intron 2 of 18) intron (NM_013381, intron 2 of 18) -69299 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 150-47 chr21 27638310 27638755 + 0.666667 NA Intergenic HAL1|LINE|L1 -83847 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 155.667-9 chr1 204060963 204061428 + 0.666667 NA Intergenic Intergenic -11920 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY-box transcription factor 13 protein-coding 118-45 chr16 83635698 83635911 + 0.666667 NA intron (NM_001220489, intron 7 of 12) L1MD2|LINE|L1 127458 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 142.333-23 chr12 12767867 12768262 + 0.666667 NA intron (NM_001130415, intron 1 of 1) AluSx4|SINE|Alu 3415 NR_030344 693198 NR_030344 ENSG00000207983 MIR613 MIRN613|hsa-mir-613 microRNA 613 ncRNA 125.167-43 chr2 171833276 171833728 + 0.666667 NA intron (NR_047549, intron 7 of 16) AluSx|SINE|Alu 60742 NM_003705 8604 Hs.470608 NM_003705 ENSG00000115840 SLC25A12 AGC1|ARALAR|EIEE39 solute carrier family 25 member 12 protein-coding 172.167-31 chr3 3614763 3615264 + 0.666667 NA Intergenic Intergenic -184418 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 125.333-86 chr3 191317624 191317909 + 0.666667 NA intron (NM_198152, intron 2 of 8) AluSx3|SINE|Alu -11628 NM_178335 152137 Hs.478682 NM_174908 ENSG00000152492 CCDC50 C3orf6|DFNA44|YMER coiled-coil domain containing 50 protein-coding 147.333-89 chr8 78634479 78634741 + 0.666667 NA Intergenic MLT2B1|LTR|ERVL -31479 NM_016010 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 128.333-111 chr7 406392 406725 + 0.666667 NA Intergenic L1MB2|LINE|L1 27133 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 163.667-38 chr2 99361924 99362251 + 0.666667 NA intron (NM_015904, intron 4 of 23) intron (NM_015904, intron 4 of 23) 24698 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 130.5-6 chr10 4335744 4336193 + 0.666667 NA Intergenic Intergenic -48278 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 161-23 chr17 47875277 47875720 + 0.666667 NA Intergenic Intergenic -19801 NM_199262 80320 Hs.253603 NM_199262 ENSG00000189120 SP6 EPFN|EPIPROFIN|KLF14 Sp6 transcription factor protein-coding 127-44 chr2 39658219 39658485 + 0.666667 NA Intergenic Intergenic -7146 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 195.5-38 chr7 119261083 119261442 + 0.666667 NA Intergenic Intergenic 646113 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 155.5-52 chr7 24802096 24802792 + 0.666667 NA intron (NR_104111, intron 21 of 21) intron (NR_104111, intron 21 of 21) -44505 NM_001127454 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 185.333-13 chr12 80630031 80630369 + 0.666667 NA intron (NM_001145026, intron 33 of 44) L1MC5a|LINE|L1 -77434 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 140-2 chr1 76549623 76550032 + 0.666667 NA intron (NM_001349109, intron 3 of 3) L1ME3Cz|LINE|L1 229440 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 146-74 chr8 134128569 134128937 + 0.666667 NA Intergenic MIRc|SINE|MIR 242257 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 214.667-25 chr4 51917529 51918139 + 0.666667 NA TTS (NM_001287757) TTS (NM_001287757) 74255 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 161-3 chr1 156520452 156520843 + 0.666667 NA Intergenic Intergenic -19872 NM_005920 4209 Hs.314327 NM_005920 ENSG00000116604 MEF2D - myocyte enhancer factor 2D protein-coding 121.667-33 chr16 51618429 51618611 + 0.666667 NA Intergenic Intergenic -143999 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 116.833-22 chr18 60293438 60293657 + 0.666667 NA Intergenic Intergenic 79228 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 115.333-102 chr7 109581801 109582030 + 0.666667 NA Intergenic Intergenic 378298 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 200.667-3 chr1 115404018 115404426 + 0.666667 NA Intergenic Intergenic -65986 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 153.333-36 chr2 19614180 19614477 + 0.666667 NA Intergenic L1MDa|LINE|L1 -254526 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 164-63 chr6 142344240 142344554 + 0.666667 NA intron (NM_198569, intron 2 of 24) intron (NM_198569, intron 2 of 24) 42390 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 124.333-57 chr22 26266816 26267092 + 0.666667 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 97480 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 117-103 chr6 132268266 132268519 + 0.666667 NA Intergenic Intergenic 133083 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 125.833-69 chr5 26759373 26759813 + 0.666667 NA Intergenic Intergenic 278993 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 125.667-48 chr18 73465637 73465847 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR 140801 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 125.667-6 chr1 91833603 91833947 + 0.666667 NA intron (NR_036634, intron 2 of 17) AluSz|SINE|Alu 52376 NM_001195683 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 134.333-53 chr2 35427096 35427420 + 0.666667 NA Intergenic Intergenic -44147 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 158.5-34 chr2 12294020 12294460 + 0.666667 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) 95110 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 140-9 chr10 51461375 51461817 + 0.666667 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 162023 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 117-100 chr6 112118208 112118475 + 0.666667 NA intron (NM_001105206, intron 34 of 38) intron (NM_001105206, intron 34 of 38) 30750 NM_001033564 619208 Hs.591340 NM_001033564 ENSG00000203778 FAM229B C6orf225 family with sequence similarity 229 member B protein-coding 157-88 chr9 117001670 117002155 + 0.666667 NA intron (NM_014010, intron 6 of 21) intron (NM_014010, intron 6 of 21) 179289 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 211.333-13 chr13 92235863 92236421 + 0.666667 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 116065 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 209.167-17 chr18 61573113 61573513 + 0.666667 NA Intergenic MLT1A|LTR|ERVL-MaLR -174863 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 159.667-85 chr7 96551791 96552292 + 0.666667 NA intron (NR_163953, intron 2 of 5) LTR16B1|LTR|ERVL -48518 NR_163948 215.333-35 chr4 108189557 108189914 + 0.666667 NA Intergenic Intergenic 17615 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 171-2 chr1 71791730 71792026 + 0.666667 NA intron (NM_173808, intron 2 of 6) intron (NM_173808, intron 2 of 6) 45134 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 210.333-22 chr22 17231448 17232102 + 0.666667 NA Intergenic Intergenic -9927 NM_001282227 51816 Hs.170310 NM_017424 ENSG00000093072 ADA2 ADGF|CECR1|IDGFL|PAN|SNEDS|VAIHS adenosine deaminase 2 protein-coding 160-71 chr8 136586298 136586656 + 0.666667 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 55679 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 167.167-27 chr14 68013074 68013382 + 0.666667 NA intron (NM_133509, intron 7 of 10) MLT1G1|LTR|ERVL-MaLR 189636 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 182.667-36 chr2 232002866 232003353 + 0.666667 NA intron (NR_046477, intron 1 of 18) intron (NR_046477, intron 1 of 18) 41396 NR_046477 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 176-16 chr2 80001106 80001589 + 0.666667 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -134764 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 174.667-46 chr4 112034972 112035480 + 0.666667 NA Intergenic L1MB1|LINE|L1 -110228 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 219.333-30 chr4 77536434 77537054 + 0.666667 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 24991 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 190.667-43 chr5 30947193 30947543 + 0.666667 NA Intergenic Intergenic -246318 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 156.5-46 chr2 78094182 78094632 + 0.666667 NA intron (NR_110287, intron 2 of 5) intron (NR_110287, intron 2 of 5) 5677 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 139.667-37 chr17 39869053 39869356 + 0.666667 NA intron (NM_199321, intron 2 of 7) intron (NM_199321, intron 2 of 7) 1002 NM_199321 124626 Hs.367245 NM_198844 ENSG00000186075 ZPBP2 ZPBPL zona pellucida binding protein 2 protein-coding 177-50 chr4 139543594 139543951 + 0.666667 NA intron (NR_131339, intron 3 of 3) AluY|SINE|Alu 12997 NM_030648 80854 Hs.480792 NM_030648 ENSG00000145391 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing 7, histone lysine methyltransferase protein-coding 155.333-37 chr17 59161807 59162139 + 0.666667 NA intron (NM_018304, intron 1 of 9) intron (NM_018304, intron 1 of 9) 6227 NM_018304 55771 Hs.631750 NM_018304 ENSG00000068489 PRR11 - proline rich 11 protein-coding 172-68 chr8 49310183 49310495 + 0.666667 NA Intergenic Intergenic 201841 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 165.333-33 chr2 182161368 182161700 + 0.666667 NA intron (NM_005019, intron 13 of 14) ERVL-B4-int|LTR|ERVL 80529 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 130.5-20 chr14 60921457 60921700 + 0.666667 NA intron (NM_001177963, intron 6 of 6) intron (NM_001177963, intron 6 of 6) 59501 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 189.5-21 chr16 14097048 14097473 + 0.666667 NA intron (NM_001365418, intron 3 of 5) intron (NM_001365418, intron 3 of 5) 25941 NM_001365412 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 157.667-38 chr2 228625625 228626007 + 0.666667 NA Intergenic Intergenic -14421 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 209.833-16 chr3 113823823 113824337 + 0.666667 NA Intergenic AluSx|SINE|Alu -14708 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 243.667-27 chr5 29307423 29308188 + 0.666667 NA Intergenic L1MB8|LINE|L1 88171 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 188.333-4 chr10 52483124 52483644 + 0.666667 NA Intergenic MER5A1|DNA|hAT-Charlie -12851 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 177.5-11 chr10 31944096 31944622 + 0.666667 NA Intergenic Intergenic -15483 NM_001270695 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 156-19 chr12 26327343 26327792 + 0.666667 NA Intergenic Intergenic 131994 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 172.5-41 chr4 14972635 14973105 + 0.666667 NA intron (NR_038857, intron 7 of 7) MSTA|LTR|ERVL-MaLR 29175 NR_038857 441009 Hs.535004 NR_038857 ENSG00000247624 CPEB2-DT CPEB2-AS1 CPEB2 divergent transcript ncRNA 130.167-81 chrX 75162988 75163310 + 0.666667 NA intron (NM_001363821, intron 2 of 9) MLT1E1A|LTR|ERVL-MaLR 6780 NM_001363821 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 124.667-48 chr17 66204841 66205148 + 0.666667 NA Intergenic L1M1|LINE|L1 -12861 NM_001353129 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 113.333-100 chr7 92999286 92999518 + 0.666667 NA Intergenic MamGypLTR2b|LTR|Gypsy 118577 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 148.167-10 chr10 125506649 125506923 + 0.666667 NA Intergenic Intergenic -67585 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 128.333-100 chr5 113534993 113535318 + 0.666667 NA intron (NM_001345975, intron 5 of 28) MER2|DNA|TcMar-Tigger 21461 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 120.333-47 chr16 55122453 55122811 + 0.666667 NA Intergenic Intergenic 191433 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 117-119 chr8 71836892 71837210 + 0.666667 NA Intergenic Charlie1|DNA|hAT-Charlie -6072 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 122.5-82 chr6 69046104 69046574 + 0.666667 NA intron (NM_001704, intron 13 of 31) intron (NM_001704, intron 13 of 31) 411057 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 208-12 chr14 51186541 51187064 + 0.666667 NA Intergenic MLT2B2|LTR|ERVL -53445 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 189.167-9 chr10 125499345 125499696 + 0.666667 NA Intergenic Intergenic -74851 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 215-38 chr7 79533100 79533761 + 0.666667 NA Intergenic AluSc5|SINE|Alu 79470 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 141.334 chr1 10581871 10582418 + 0.666667 NA intron (NM_004565, intron 3 of 8) intron (NM_004565, intron 3 of 8) 107194 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 172-46 chr4 4345696 4346189 + 0.666667 NA Intergenic MIRb|SINE|MIR -40314 NM_001287764 27065 Hs.518595 NM_014392 ENSG00000168824 NSG1 D4S234|D4S234E|NEEP21|P21 neuronal vesicle trafficking associated 1 protein-coding 230.667-3 chr10 18093250 18093667 + 0.666667 NA Intergenic LTR85c|LTR|Gypsy? -46966 NM_201593 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 156.333-90 chr8 129708220 129708542 + 0.666667 NA Intergenic Intergenic -28142 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 142.667-100 chr8 136283554 136283812 + 0.666667 NA Intergenic Intergenic -247115 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 240-11 chr17 52000146 52000682 + 0.666667 NA intron (NM_001082533, intron 3 of 9) MIRb|SINE|MIR 158300 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 176.167-30 chr3 111331915 111332253 + 0.666667 NA Intergenic Intergenic -210113 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 125.333-93 chr5 73654994 73655303 + 0.666667 NA intron (NM_001177693, intron 1 of 35) intron (NM_001177693, intron 1 of 35) 28990 NM_001080479 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 118.667-28 chr12 86909452 86909836 + 0.666667 NA Intergenic L1ME1|LINE|L1 -70644 NM_001351285 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 144-28 chr18 70492151 70492498 + 0.666667 NA Intergenic Intergenic -107733 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 174.833-7 chr12 11979696 11979986 + 0.666667 NA Intergenic AluSp|SINE|Alu -70020 NM_001370268 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 272.333-20 chr6 46878798 46879358 + 0.666667 NA intron (NM_001098518, intron 9 of 20) L1ME1|LINE|L1 -24393 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 271-9 chr3 191426563 191427075 + 0.666667 NA intron (NR_120606, intron 1 of 6) intron (NR_120606, intron 1 of 6) 1295 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 134-90 chr5 125757919 125758371 + 0.666667 NA Intergenic L1M7|LINE|L1 264884 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 128.333-115 chr8 80828983 80829355 + 0.666667 NA intron (NM_001033723, intron 1 of 8) intron (NM_001033723, intron 1 of 8) 45299 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 118.5 chr1 37060172 37060419 + 0.666667 NA Intergenic MER33|DNA|hAT-Charlie -25780 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 127-100 chr9 31419724 31419933 + 0.666667 NA Intergenic Intergenic -38338 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 166-47 chr4 160513118 160513408 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -735479 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 170.333-20 chr12 105537510 105537858 + 0.666667 NA Intergenic Intergenic -166519 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 170.833-48 chr8 78788909 78789228 + 0.666667 NA intron (NM_001199886, intron 2 of 4) L1MC|LINE|L1 16395 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 236.667-30 chr4 180558455 180558845 + 0.666667 NA Intergenic Intergenic 600499 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 172.833-33 chr3 137777907 137778209 + 0.666667 NA intron (NR_109987, intron 4 of 4) MIR1_Amn|SINE|MIR 6147 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 137.167-13 chr12 27312155 27312688 + 0.666667 NA intron (NM_015000, intron 5 of 13) intron (NM_015000, intron 5 of 13) -20415 NM_001248002 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 169.833-25 chr4 148021227 148021646 + 0.666667 NA intron (NM_024605, intron 18 of 22) intron (NM_024605, intron 18 of 22) 238841 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 185.833-30 chr5 28922402 28922928 + 0.666667 NA Intergenic L1MCa|LINE|L1 -4205 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 116.667-81 chr4 64849398 64849667 + 0.666667 NA Intergenic LTR38|LTR|ERV1 154968 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 209.5-16 chr17 74021333 74021666 + 0.666667 NA Intergenic AluSx|SINE|Alu -182179 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 151.167-32 chr21 23413114 23413388 + 0.666667 NA Intergenic Intergenic -28416 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 146.167-59 chr5 163073600 163073886 + 0.666667 NA Intergenic L1PB1|LINE|L1 -363828 NM_001364023 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 143.667-80 chr4 59177198 59177526 + 0.666667 NA Intergenic Intergenic 163789 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 177.833-33 chr5 43703018 43703303 + 0.666667 NA intron (NM_012343, intron 21 of 21) intron (NM_012343, intron 21 of 21) -99930 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 128.333-74 chr20 14773383 14773625 + 0.666667 NA intron (NM_001351663, intron 5 of 17) L1MA9|LINE|L1 156014 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 145.333-15 chr10 125091133 125091377 + 0.666667 NA intron (NM_001321013, intron 1 of 9) intron (NM_001321013, intron 1 of 9) -58385 NR_036178 100423041 NR_036178 ENSG00000264572 MIR4296 - microRNA 4296 ncRNA 125.5-85 chr8 144366311 144366681 + 0.666667 NA Intergenic MSTD|LTR|ERVL-MaLR 6375 NR_134307 101928902 Hs.529758 NR_134307 LOC101928902 - uncharacterized LOC101928902 ncRNA 154-65 chr5 91661793 91662188 + 0.666667 NA Intergenic LTR33|LTR|ERVL -278673 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 158.333-28 chr14 49835383 49835856 + 0.666667 NA intron (NM_001301732, intron 6 of 31) L1M4|LINE|L1 17169 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 142.667-48 chr2 108763930 108764278 + 0.666667 NA exon (NM_006267, exon 20 of 29) exon (NM_006267, exon 20 of 29) -22646 NM_001351544 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 173.833-23 chr15 68911384 68911672 + 0.666667 NA Intergenic AluSx|SINE|Alu -18972 NR_033671 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 151.833-11 chr11 47521364 47521622 + 0.666667 NA intron (NM_001330272, intron 1 of 15) MIR|SINE|MIR 2495 NM_001172639 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 231.833-17 chr8 32541359 32541879 + 0.666667 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -6591 NM_001160005 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 224.667-21 chr22 25474090 25474439 + 0.666667 NA Intergenic AluSg4|SINE|Alu 18618 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 186.5-40 chr2 142449606 142449989 + 0.666667 NA Intergenic Intergenic -318096 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 145-10 chr10 34413190 34413517 + 0.666667 NA intron (NM_001184791, intron 4 of 20) intron (NM_001184791, intron 4 of 20) 401943 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 137.333-83 chr6 47105969 47106375 + 0.666667 NA Intergenic MIR|SINE|MIR -63840 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 276.333-8 chr13 109808814 109809570 + 0.666667 NA Intergenic MIRb|SINE|MIR -22609 NM_003749 8660 Hs.442344 NM_003749 ENSG00000185950 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 274.5-20 chr8 133094759 133095582 + 0.666667 NA exon (NM_003235, exon 42 of 48) exon (NM_003235, exon 42 of 48) 7432 NM_001045556 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 136.833-55 chr5 35543442 35543739 + 0.666667 NA Intergenic Intergenic -74273 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 195-13 chr2 31579516 31579903 + 0.666667 NA intron (NM_000348, intron 1 of 4) MIRb|SINE|MIR 1229 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 133.667-85 chr7 17494845 17495205 + 0.666667 NA intron (NR_110013, intron 1 of 3) LTR1B|LTR|ERV1 63884 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 125.667-35 chr14 75877271 75877640 + 0.666667 NA intron (NM_015072, intron 29 of 31) intron (NM_015072, intron 29 of 31) 104540 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 117.667-22 chr11 17349918 17350196 + 0.666667 NA Intergenic Intergenic -1743 NM_001202439 374383 Hs.146274 NM_001009913 ENSG00000188211 NCR3LG1 B7-H6|B7H6|DKFZp686O24166 natural killer cell cytotoxicity receptor 3 ligand 1 protein-coding 196.667-26 chr2 14789501 14789837 + 0.666667 NA Intergenic Intergenic 156952 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 118-98 chr5 133820340 133820587 + 0.666667 NA Intergenic Intergenic -93214 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 148-59 chr4 54206798 54207098 + 0.666667 NA Intergenic Intergenic -22345 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 223.333-11 chr12 30182052 30182717 + 0.666667 NA Intergenic L1ME2|LINE|L1 -397625 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 139.667-53 chr2 69852419 69852851 + 0.666667 NA intron (NM_178439, intron 8 of 13) AluSz6|SINE|Alu 22975 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 297 chr10 55243308 55244135 + 0.666667 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -355321 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 123.333-111 chr8 117813181 117813550 + 0.666667 NA intron (NM_000127, intron 7 of 10) L2c|LINE|L2 107548 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 116.5-37 chr2 66320082 66320395 + 0.666667 NA Intergenic Intergenic 38090 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 205.833-29 chr7 83156793 83157243 + 0.666667 NA intron (NM_033026, intron 1 of 24) intron (NM_033026, intron 1 of 24) 5866 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 172.167-34 chr3 71066026 71066357 + 0.666667 NA intron (NR_146142, intron 7 of 19) intron (NR_146142, intron 7 of 19) -1267 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 200-30 chr18 13556183 13556689 + 0.666667 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -54678 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 221.667-15 chr2 39877748 39878220 + 0.666667 NA Intergenic L1PA8A|LINE|L1 -39650 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 131.333-15 chr11 34193829 34194129 + 0.666667 NA intron (NM_145804, intron 3 of 16) intron (NM_145804, intron 3 of 16) 88350 NM_001144030 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|Kre33|NET43 N-acetyltransferase 10 protein-coding 147.667-9 chr1 221559182 221559485 + 0.666667 NA Intergenic Intergenic 177567 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 195.167-18 chr2 211318824 211319228 + 0.666667 NA Intergenic Intergenic 701455 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 194.167-29 chr5 142348720 142349055 + 0.666667 NA intron (NR_120664, intron 2 of 3) AluYk3|SINE|Alu 23594 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 115-21 chr12 39740558 39740746 + 0.666667 NA intron (NR_135051, intron 13 of 18) intron (NR_135051, intron 13 of 18) 114469 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 190.167-39 chr6 69868195 69868725 + 0.666667 NA intron (NM_001858, intron 1 of 50) intron (NM_001858, intron 1 of 50) 1904 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 175.333-23 chr18 71361875 71362348 + 0.666667 NA Intergenic Intergenic 216845 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 148.167-18 chr12 33272725 33273286 + 0.666667 NA Intergenic Intergenic 166814 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 212.167-7 chr15 69895095 69895644 + 0.666667 NA Intergenic L2a|LINE|L2 60135 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 188-67 chr8 133235589 133235995 + 0.666667 NA Intergenic AluSx|SINE|Alu 44753 NM_001204869 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 201.333-41 chr8 119764492 119765080 + 0.666667 NA intron (NM_003184, intron 18 of 25) intron (NM_003184, intron 18 of 25) 68055 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 129.333-107 chr9 29346987 29347363 + 0.666667 NA Intergenic L3|LINE|CR1 -133574 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 164.333-62 chr5 164964077 164964405 + 0.666667 NA Intergenic Intergenic 493962 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 172.833-4 chr1 172152566 172152988 + 0.666667 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -7942 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 148.333-33 chr14 88099393 88099727 + 0.666667 NA Intergenic L1MB8|LINE|L1 -73248 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 254.5-13 chr5 52470476 52471075 + 0.666667 NA Intergenic Intergenic -317141 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 151.333-71 chr5 33277938 33278288 + 0.666667 NA Intergenic Intergenic 48378 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 118.667-92 chr5 53242398 53242795 + 0.666667 NA Intergenic Intergenic 132754 NR_104654 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 256.167-13 chr3 71946875 71947662 + 0.666667 NA Intergenic MER102b|DNA|hAT-Charlie 153187 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 145-29 chr15 68043642 68043910 + 0.666667 NA Intergenic MER47A|DNA|TcMar-Tigger -10403 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 121.333-80 chr5 4573217 4573432 + 0.666667 NA Intergenic Intergenic -200157 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 209-13 chr10 68388327 68388834 + 0.666667 NA intron (NR_103476, intron 7 of 18) AluJb|SINE|Alu 18609 NM_017987 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 183.333-39 chr3 119192461 119192892 + 0.666667 NA intron (NM_006952, intron 5 of 7) L2|LINE|L2 19078 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 137-21 chr11 95361362 95361676 + 0.666667 NA Intergenic L2c|LINE|L2 -129044 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 148.833-44 chr4 36349605 36350056 + 0.666667 NA Intergenic LTR65|LTR|ERV1 68214 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 219.666-7 chr6 11369057 11369688 + 0.666667 NA intron (NR_073131, intron 1 of 9) intron (NR_073131, intron 1 of 9) 12976 NR_073131 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 142-29 chr13 65065323 65065723 + 0.666667 NA Intergenic MIRc|SINE|MIR -800524 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 174-42 chr4 44330438 44330990 + 0.666667 NA intron (NM_198353, intron 1 of 1) MIRb|SINE|MIR 118095 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 209.333-12 chr16 47622848 47623232 + 0.666667 NA intron (NM_001031835, intron 15 of 31) MIRb|SINE|MIR 161709 NM_001031835 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 115-90 chr9 126411149 126411423 + 0.666667 NA promoter-TSS (NR_045006) promoter-TSS (NR_045006) -782 NR_045006 641373 Hs.742606 NR_045006 NRON NCRNA00194 non-coding repressor of NFAT ncRNA 184.5-41 chr6 24607620 24608031 + 0.666667 NA intron (NM_001350409, intron 1 of 21) intron (NM_001350409, intron 1 of 21) -24598 NM_001252328 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 AAVR|DYLX2|DYX2|NMIG KIAA0319 protein-coding 175.833-2 chr1 150892807 150893377 + 0.666667 NA intron (NR_148929, intron 1 of 1) L1M5|LINE|L1 5839 NR_148929 100996521 Hs.208452 NR_148929 CTXND2 - cortexin domain containing 2 ncRNA 152.333-46 chr4 62273187 62273637 + 0.666667 NA Intergenic Intergenic -111647 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 135.167-38 chr16 56516138 56516546 + 0.666667 NA intron (NM_031885, intron 1 of 16) intron (NM_031885, intron 1 of 16) 3682 NM_031885 583 Hs.333738 NM_031885 ENSG00000125124 BBS2 BBS|RP74 Bardet-Biedl syndrome 2 protein-coding 125.333-31 chr12 433471 433914 + 0.666667 NA intron (NM_001130148, intron 7 of 10) intron (NM_001130148, intron 7 of 10) -26247 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 141.5-93 chrX 57213783 57214301 + 0.666667 NA Intergenic L1PA15-16|LINE|L1 -72635 NM_001353840 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 147-66 chr5 30138060 30138395 + 0.666667 NA Intergenic Intergenic 257667 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 309.5-11 chr8 57640872 57641558 + 0.666667 NA Intergenic Intergenic -104934 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 187.167-27 chr4 113637727 113638120 + 0.666667 NA intron (NM_001221, intron 3 of 18) intron (NM_001221, intron 3 of 18) 123815 NM_001321591 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 175.334-8 chr4 137166399 137166925 + 0.666667 NA intron (NR_149105, intron 1 of 3) L1MC4|LINE|L1 -27094 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 134-61 chr2 124848348 124848685 + 0.666667 NA intron (NM_130773, intron 19 of 23) L1MA9|LINE|L1 823229 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 176.667-61 chr4 186847450 186847748 + 0.666667 NA Intergenic Intergenic -123743 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 167-48 chr5 155091190 155091673 + 0.666667 NA Intergenic Intergenic 77676 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 149.333-73 chr5 18701193 18701510 + 0.666667 NA Intergenic AluSq4|SINE|Alu 894077 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 184.667-22 chr16 52176255 52176754 + 0.666667 NA Intergenic MIR3|SINE|MIR -82060 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 148.167-48 chr20 55484714 55485216 + 0.666667 NA Intergenic Intergenic -57768 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 135.5-83 chr8 131406478 131406946 + 0.666667 NA Intergenic Intergenic -365803 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 143.667-35 chr14 27462930 27463275 + 0.666667 NA intron (NR_148991, intron 2 of 2) L1ME1|LINE|L1 -149486 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 118.833-40 chr2 123951491 123951723 + 0.666667 NA Intergenic L1MA1|LINE|L1 73567 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 133.667-59 chr21 29847056 29847267 + 0.666667 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 92835 NM_001320621 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 190.667-38 chr4 52181827 52182231 + 0.666667 NA Intergenic L1MB7|LINE|L1 130725 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 126.167-84 chr7 50419075 50419298 + 0.666667 NA Intergenic Intergenic 31164 NM_001287494 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 165.833-32 chr2 47926145 47926590 + 0.666667 NA Intergenic Zaphod|DNA|hAT-Tip100 -20574 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 167.5-23 chr14 48535838 48536341 + 0.666667 NA Intergenic L1MC1|LINE|L1 -741075 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 145.667-82 chr5 32147591 32147960 + 0.666667 NA intron (NM_022130, intron 1 of 3) intron (NM_022130, intron 1 of 3) 26544 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 113.333-65 chr21 14484338 14484681 + 0.666667 NA TTS (NM_001286523) TTS (NM_001286523) 61806 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 146.667-3 chr1 94328371 94328647 + 0.666667 NA Intergenic Intergenic -80763 NM_001328664 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 114.167-23 chr12 58470555 58470894 + 0.666667 NA Intergenic MIRb|SINE|MIR -120978 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 162.667-80 chr8 57432730 57433146 + 0.666667 NA Intergenic Charlie1a|DNA|hAT-Charlie 89151 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 151-30 chr17 52765812 52766272 + 0.666667 NA Intergenic L1PB3|LINE|L1 -96079 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 160-65 chr6 50454501 50454768 + 0.666667 NA Intergenic Intergenic -258910 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 115.833-55 chr5 36172277 36172521 + 0.666667 NA intron (NM_032637, intron 7 of 9) Charlie15b|DNA|hAT-Charlie 20288 NM_032637 6502 Hs.23348 NM_005983 ENSG00000145604 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase associated protein 2 protein-coding 205.333-28 chr2 164194771 164195431 + 0.666667 NA Intergenic Intergenic 373394 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 138-80 chr5 19559226 19559459 + 0.666667 NA intron (NM_001349559, intron 8 of 12) L1PB1|LINE|L1 326930 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 174-9 chr11 59805423 59805805 + 0.666667 NA TTS (NM_017840) TTS (NM_017840) 5164 NM_017840 54948 Hs.530734 NM_017840 ENSG00000166902 MRPL16 L16mt|MRP-L16|PNAS-111 mitochondrial ribosomal protein L16 protein-coding 154.833-17 chr15 33409655 33409979 + 0.666667 NA intron (NM_001243996, intron 1 of 102) intron (NM_001243996, intron 1 of 102) 98850 NM_001036 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 146.667-53 chr2 116486629 116486960 + 0.666667 NA Intergenic L1MA4A|LINE|L1 1142979 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 130.667-19 chr12 113461817 113462125 + 0.666667 NA TTS (NM_022363) TTS (NM_022363) 9900 NM_022363 64211 Hs.302029 NM_022363 ENSG00000089116 LHX5 - LIM homeobox 5 protein-coding 130.667 chr1 21542378 21542729 + 0.666667 NA intron (NM_001177520, intron 1 of 9) intron (NM_001177520, intron 1 of 9) -8717 NM_001369803 249 Hs.75431 NM_000478 ENSG00000162551 ALPL AP-TNAP|APTNAP|HOPS|TNALP|TNAP|TNSALP alkaline phosphatase, biomineralization associated protein-coding 223-13 chr18 11371404 11371920 + 0.666667 NA Intergenic L1MC4|LINE|L1 -82816 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 148.167-66 chr5 123009333 123009642 + 0.666667 NA TTS (NR_146145) TTS (NR_146145) 27238 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 140.333-33 chr2 45753261 45753520 + 0.666667 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 101715 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 137.167-47 chr4 85936564 85936905 + 0.666667 NA intron (NM_031305, intron 1 of 6) intron (NM_031305, intron 1 of 6) 6718 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 188.333-23 chr17 59635925 59636354 + 0.666667 NA intron (NM_001288653, intron 1 of 31) AluSp|SINE|Alu 16244 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 159.333-44 chr20 47278041 47278506 + 0.666667 NA intron (NM_001281774, intron 11 of 23) AluJo|SINE|Alu -40229 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 163.333-48 chr3 82439814 82440188 + 0.666667 NA intron (NR_147146, intron 4 of 8) L1MC4|LINE|L1 453859 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 201.833-27 chr8 133234739 133235255 + 0.666667 NA Intergenic Intergenic 43958 NM_001204869 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 114.167-98 chr8 136397154 136397439 + 0.666667 NA Intergenic Intergenic -133502 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 141.333-9 chr10 32686062 32686480 + 0.666667 NA intron (NM_001321115, intron 23 of 43) MER76-int|LTR|ERVL 215201 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 138.167-5 chr1 207297388 207297913 + 0.666667 NA Intergenic Intergenic -24028 NM_001114752 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 143.167-15 chr13 35433352 35433634 + 0.666667 NA intron (NM_015678, intron 39 of 57) intron (NM_015678, intron 39 of 57) 43196 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 257.333-16 chr4 93967963 93968449 + 0.666667 NA Intergenic Intergenic 139453 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 156.667-27 chr12 60310454 60310819 + 0.666667 NA Intergenic Intergenic 621266 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 191.333-12 chr14 70118457 70118859 + 0.666667 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -38441 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 127-63 chr3 22534349 22534649 + 0.666667 NA Intergenic Intergenic 577360 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 149.167-30 chr2 78555209 78555737 + 0.666667 NA intron (NR_136311, intron 2 of 2) intron (NR_136311, intron 2 of 2) 9942 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 139.667-34 chr16 24808628 24808947 + 0.666667 NA intron (NM_014494, intron 17 of 24) intron (NM_014494, intron 17 of 24) -37076 NM_001258414 115584 Hs.164118 NM_052944 ENSG00000158865 SLC5A11 KST1|RKST1|SGLT6|SMIT2 solute carrier family 5 member 11 protein-coding 149.833-6 chr10 66711307 66711584 + 0.666667 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -214591 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 119-13 chr10 36494698 36495090 + 0.666667 NA Intergenic Intergenic -630963 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 127.667-63 chr4 55571712 55572243 + 0.666667 NA intron (NM_152401, intron 3 of 5) intron (NM_152401, intron 3 of 5) 20268 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 113.333-101 chr8 64509348 64509575 + 0.666667 NA Intergenic L1ME2|LINE|L1 67802 NR_015374 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 201.667-27 chr5 31316411 31316846 + 0.666667 NA intron (NM_001362435, intron 9 of 10) MamRep434|DNA|TcMar-Tigger 122942 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 132.5-27 chr14 58237462 58237928 + 0.666667 NA Intergenic AluSx1|SINE|Alu -7110 NR_038123 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 135.667-93 chr5 151233306 151233595 + 0.666667 NA Intergenic Intergenic -9358 NM_015621 26112 Hs.655336 NM_015621 ENSG00000198624 CCDC69 - coiled-coil domain containing 69 protein-coding 235.333-6 chr14 45768886 45769268 + 0.666667 NA Intergenic Intergenic -53475 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 189.333-2 chr10 57452941 57453399 + 0.666667 NA Intergenic MIRb|SINE|MIR -148611 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 214.5-27 chr5 35203152 35203839 + 0.666667 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) 26992 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 130-70 chr3 103959386 103959793 + 0.666667 NA Intergenic Intergenic -435473 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 218.5-5 chr10 77610987 77611538 + 0.666667 NA intron (NM_001271519, intron 1 of 28) MLT1L|LTR|ERVL-MaLR 26546 NM_001322829 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 139.834-3 chr20 23559066 23559652 + 0.666667 NA Intergenic L1M4c|LINE|L1 9125 NM_080610 128821 Hs.121554 NM_080610 ENSG00000101435 CST9L CTES7B|bA218C14.1 cystatin 9 like protein-coding 123-36 chr18 41995070 41995318 + 0.666667 NA intron (NM_001308020, intron 6 of 23) L1M5|LINE|L1 39960 NM_002647 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 119.833-13 chr10 17739476 17739711 + 0.666667 NA Intergenic Intergenic -12608 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 200.5-10 chr14 68229768 68230377 + 0.666667 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 398715 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 115.167-76 chr4 87864460 87864702 + 0.666667 NA Intergenic MER61A|LTR|ERV1 29878 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 143.833 chr1 42861636 42862048 + 0.666667 NA intron (NR_104171, intron 1 of 3) AluJr4|SINE|Alu 4220 NR_104171 339539 Hs.434301 NR_104171 LOC339539 - uncharacterized LOC339539 ncRNA 122.333-115 chr8 130777427 130777776 + 0.666667 NA Intergenic Intergenic 263308 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 203.834 chr3 113528256 113528833 + 0.666667 NA Intergenic MER89-int|LTR|ERV1 -3827 NM_001308350 54847 Hs.591291 NM_017699 ENSG00000072858 SIDT1 SID-1|SID1 SID1 transmembrane family member 1 protein-coding 160.167-24 chr17 70637574 70638140 + 0.666667 NA Intergenic Intergenic 468322 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 205.667-24 chr16 56005122 56005606 + 0.666667 NA Intergenic Intergenic -49333 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 126-42 chr2 103341081 103341438 + 0.666667 NA Intergenic Tigger13a|DNA|TcMar-Tigger -356830 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 122.833-59 chr3 115329006 115329302 + 0.666667 NA Intergenic (CTTCTCTT)n|Simple_repeat|Simple_repeat -181866 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 136.667-52 chr21 31384941 31385218 + 0.666667 NA intron (NM_001353690, intron 1 of 27) AluSq2|SINE|Alu -40725 NM_001353686 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 133.667-37 chr16 10962370 10962815 + 0.666667 NA intron (NM_015226, intron 3 of 22) intron (NM_015226, intron 3 of 22) 18028 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 159.833-2 chr1 29276054 29276323 + 0.666667 NA intron (NM_133177, intron 8 of 30) AluJb|SINE|Alu 39666 NM_001195001 10076 Hs.19718 NM_005704 ENSG00000060656 PTPRU FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J protein tyrosine phosphatase receptor type U protein-coding 125-8 chr1 207059098 207059571 + 0.666667 NA intron (NM_006212, intron 2 of 14) intron (NM_006212, intron 2 of 14) 6059 NM_006212 5208 Hs.282702 NM_006212 ENSG00000123836 PFKFB2 PFK-2/FBPase-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 protein-coding 177.833-3 chr11 94985893 94986164 + 0.666667 NA intron (NM_018039, intron 2 of 2) L1MB7|LINE|L1 12319 NM_018039 55693 Hs.503598 NM_018039 ENSG00000186280 KDM4D JMJD2D lysine demethylase 4D protein-coding 197-45 chr7 33386927 33387254 + 0.666667 NA intron (NM_198428, intron 18 of 22) L1MC4a|LINE|L1 257526 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 216.5-28 chr6 60714962 60715419 + 0.666667 NA Intergenic L1PA10|LINE|L1 -858940 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 292.167-3 chr2 72783356 72784142 + 0.666667 NA intron (NR_135774, intron 1 of 19) L1MA4A|LINE|L1 42284 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 165-27 chr2 211618638 211619004 + 0.666667 NA intron (NM_001042599, intron 19 of 26) intron (NM_001042599, intron 19 of 26) 807539 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 313-9 chr8 144519884 144520649 + 0.666667 NA exon (NM_014665, exon 3 of 4) exon (NM_014665, exon 3 of 4) 2274 NM_001272036 9684 Hs.459391 NM_014665 ENSG00000160959 LRRC14 LRRC14A leucine rich repeat containing 14 protein-coding 318.833-7 chr20 38170247 38171214 + 0.666667 NA Intergenic MIRb|SINE|MIR -4222 NM_001323316 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 161.833-5 chr12 13656636 13657013 + 0.666667 NA intron (NM_000834, intron 4 of 12) MIR3|SINE|MIR -280079 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 124.667-128 chr9 37888798 37889049 + 0.666667 NA intron (NM_033412, intron 2 of 2) Charlie1|DNA|hAT-Charlie 15204 NM_033412 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 119.333-56 chr2 154176219 154176502 + 0.666667 NA intron (NM_052917, intron 4 of 12) AluYm1|SINE|Alu 231966 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 150.667-54 chr2 213842441 213842778 + 0.666667 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 84542 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 211.333-23 chr2 9143366 9143762 + 0.666667 NA Intergenic Intergenic -63201 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 160.667-74 chr7 83038892 83039205 + 0.666667 NA intron (NM_033026, intron 3 of 24) L1MB7|LINE|L1 123836 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 168.667-28 chr2 7340748 7341049 + 0.666667 NA Intergenic Intergenic -80363 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 153.5-25 chr17 51221406 51221651 + 0.666667 NA intron (NM_017643, intron 3 of 16) L3|LINE|CR1 38521 NM_017643 54799 Hs.656803 NM_017643 ENSG00000011258 MBTD1 SA49P01 mbt domain containing 1 protein-coding 177.333-59 chr7 105652298 105652615 + 0.666667 NA intron (NM_001318229, intron 3 of 9) intron (NM_001318229, intron 3 of 9) 26699 NM_001318229 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 212 chr1 62911833 62912319 + 0.666667 NA Intergenic Intergenic 98849 NR_146607 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 264.666-6 chr22 34205930 34206656 + 0.666667 NA Intergenic Intergenic -283405 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 117-9 chr1 183065203 183065497 + 0.666667 NA intron (NM_002293, intron 1 of 27) MLT2C2|LTR|ERVL 41930 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 166-13 chr10 79111161 79111481 + 0.666667 NA intron (NM_020338, intron 1 of 24) L2c|LINE|L2 42355 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 191.333-19 chr2 154655408 154655761 + 0.666667 NA Intergenic Intergenic -42997 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 120.667-50 chr16 73639101 73639394 + 0.666667 NA Intergenic Intergenic 252442 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 192-44 chr7 88507514 88507942 + 0.666667 NA Intergenic Intergenic -200834 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 183.333-41 chr4 62208591 62208930 + 0.666667 NA Intergenic Intergenic -46995 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 194.333-15 chr15 55188415 55188753 + 0.666667 NA intron (NM_016304, intron 3 of 5) L2c|LINE|L2 8357 NM_016304 51187 Hs.274772 NM_016304 ENSG00000137876 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 133.5-20 chr12 23318837 23319184 + 0.666667 NA Intergenic L1MB8|LINE|L1 143374 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 157.5-50 chr5 43096974 43097459 + 0.666667 NA Intergenic Intergenic -23698 NM_001330710 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 204.333-33 chr3 50360364 50360758 + 0.666667 NA intron (NR_111912, intron 2 of 3) AluSp|SINE|Alu -1040 NM_007024 11070 Hs.91566 NM_007024 ENSG00000126062 TMEM115 PL6 transmembrane protein 115 protein-coding 178.667-15 chr14 65243081 65243384 + 0.666667 NA Intergenic L2c|LINE|L2 -20885 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 163.667-23 chr14 65916987 65917545 + 0.666667 NA Intergenic Intergenic 446164 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 170.167-41 chr3 180029173 180029705 + 0.666667 NA intron (NM_016559, intron 1 of 14) intron (NM_016559, intron 1 of 14) 7498 NM_001349404 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 186.167-33 chr4 141277240 141277533 + 0.666667 NA Intergenic MLT1F|LTR|ERVL-MaLR 55231 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 199.333-30 chr4 55895574 55896008 + 0.666667 NA intron (NM_001024924, intron 15 of 18) intron (NM_001024924, intron 15 of 18) 42141 NM_178237 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 307.833-4 chr2 137834866 137835719 + 0.666667 NA Intergenic Intergenic 92640 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 263.167-7 chr20 56209536 56210072 + 0.666667 NA Intergenic MER4D|LTR|ERV1 -38928 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 123.667-60 chr20 20586958 20587362 + 0.666667 NA intron (NM_020343, intron 18 of 39) L1ME3F|LINE|L1 125484 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 207-46 chr7 64781693 64782058 + 0.666667 NA Intergenic L1MC5|LINE|L1 -12553 NM_001367574 7697 Hs.184080 NM_006524 ENSG00000197008 ZNF138 pHZ-32 zinc finger protein 138 protein-coding 116.333-71 chr4 101640497 101640747 + 0.666667 NA Intergenic MIRb|SINE|MIR -149985 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 192.333-39 chr4 81318667 81319155 + 0.666667 NA Intergenic Intergenic -103689 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 121.833-60 chr5 45859453 45859829 + 0.666667 NA Intergenic L1PA13|LINE|L1 -163261 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 174.333-6 chr10 120197821 120198217 + 0.666667 NA Intergenic L1PA16|LINE|L1 157204 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 122.833-84 chr8 99175807 99176048 + 0.666667 NA intron (NM_017890, intron 16 of 61) Tigger2|DNA|TcMar-Tigger 162661 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 136.833-6 chr11 4087866 4088162 + 0.666667 NA intron (NM_001277961, intron 11 of 11) MIRc|SINE|MIR -6671 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 179.167-9 chr11 7323792 7324188 + 0.666667 NA intron (NM_175733, intron 3 of 6) L1ME3E|LINE|L1 72086 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 124-80 chr6 55295682 55295926 + 0.666667 NA Intergenic L4_C_Mam|LINE|RTE-X -31665 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 176.833-8 chr12 132274103 132274500 + 0.666667 NA intron (NM_001122636, intron 2 of 10) intron (NM_001122636, intron 2 of 10) -1090 NR_024563 100130238 Hs.536338 NR_024563 LOC100130238 - uncharacterized LOC100130238 ncRNA 204.167-7 chr10 82999098 82999563 + 0.666667 NA Intergenic Intergenic 677759 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 223.334-5 chr3 38518071 38518736 + 0.666667 NA intron (NR_134938, intron 6 of 7) intron (NR_134938, intron 6 of 7) 22063 NM_005107 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 115.167-5 chr1 84010546 84010765 + 0.666667 NA Intergenic Intergenic -11523 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 156.333-85 chr7 99926600 99927026 + 0.666667 NA intron (NM_181538, intron 1 of 1) MER51A|LTR|ERV1 2807 NM_181538 349149 Hs.647524 NM_181538 ENSG00000176402 GJC3 CX29|CX30.2|CX31.3|GJE1 gap junction protein gamma 3 protein-coding 125.333-121 chr8 113021915 113022402 + 0.666667 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 354994 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 130.333-56 chr22 19332039 19332304 + 0.666667 NA intron (NM_003325, intron 24 of 24) intron (NM_003325, intron 24 of 24) -40452 NM_001835 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 152-38 chr4 76589888 76590214 + 0.666667 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 14500 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 122-93 chr9 74036245 74036439 + 0.666667 NA Intergenic Intergenic -335189 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 157.833-13 chr11 55346145 55346737 + 0.666667 NA Intergenic L1ME3Cz|LINE|L1 3240 NM_001005274 81327 Hs.554530 NM_001005274 ENSG00000181961 OR4A16 OR11-117|OR4A16Q olfactory receptor family 4 subfamily A member 16 protein-coding 192.333-6 chr12 61442351 61442862 + 0.666667 NA Intergenic Intergenic 750233 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 162.333-22 chr15 86073743 86074044 + 0.666667 NA Intergenic Intergenic -5727 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 141-10 chr10 94017842 94018202 + 0.666667 NA intron (NM_001288989, intron 1 of 32) intron (NM_001288989, intron 1 of 32) 24091 NM_001288989 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 135.333-94 chr9 101762512 101762750 + 0.666667 NA Intergenic L1ME3G|LINE|L1 -24051 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 159.333-68 chr6 138681475 138681851 + 0.666667 NA Intergenic Intergenic -10005 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 161.167-12 chr12 8732780 8733195 + 0.666667 NA intron (NR_147950, intron 2 of 8) L1M5|LINE|L1 34996 NR_147947 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 154.667-41 chr2 216683223 216683561 + 0.666667 NA intron (NM_000599, intron 1 of 3) intron (NM_000599, intron 1 of 3) 12157 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 114-96 chr8 13060296 13060495 + 0.666667 NA Intergenic Intergenic 48131 NM_001099677 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 184-31 chr3 56914974 56915445 + 0.666667 NA intron (NM_001128615, intron 3 of 12) AluJb|SINE|Alu 1227 NM_001289698 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 299.5-13 chr8 125767463 125768132 + 0.666667 NA Intergenic Intergenic 183400 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 172-9 chr11 39369602 39370053 + 0.666667 NA Intergenic AluY|SINE|Alu 720969 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 132.667-7 chr1 229198587 229198916 + 0.666667 NA Intergenic MER2|DNA|TcMar-Tigger -23950 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 141.5-45 chr2 39895330 39895819 + 0.666667 NA Intergenic MIR|SINE|MIR -22060 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 119.667-4 chr1 169020394 169020698 + 0.666667 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 66459 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 152.667-13 chr11 5007646 5007956 + 0.666667 NA Intergenic LTR8A|LTR|ERV1 8818 NM_001004755 119682 Hs.553559 NM_001004755 ENSG00000176798 OR51L1 OR11-31 olfactory receptor family 51 subfamily L member 1 protein-coding 211.333-32 chr20 34873741 34874425 + 0.666667 NA promoter-TSS (NM_001242393) promoter-TSS (NM_001242393) -880 NM_001242393 55902 Hs.517034 NM_018677 ENSG00000131069 ACSS2 ACAS2|ACECS|ACS|ACSA|dJ1161H23.1 acyl-CoA synthetase short chain family member 2 protein-coding 125.333-111 chr7 25833729 25834078 + 0.666667 NA Intergenic Intergenic -43784 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 145-97 chr9 69590332 69590759 + 0.666667 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 81826 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 214.167-3 chr1 232237416 232237866 + 0.666667 NA Intergenic Intergenic 277967 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 227.667-21 chr4 170763265 170763840 + 0.666667 NA Intergenic Intergenic -19817 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 123.333-79 chr3 187994599 187994996 + 0.666667 NA Intergenic Intergenic -18390 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 139.5-9 chr10 44119837 44120204 + 0.666667 NA Intergenic Intergenic -172730 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 148.667-81 chr8 131272648 131273028 + 0.666667 NA Intergenic L1MB1|LINE|L1 -231929 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 283.334-3 chr13 85240031 85240828 + 0.666667 NA Intergenic Intergenic -92372 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 216.333-38 chr5 124137236 124137717 + 0.666667 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 301044 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 169.333-60 chr6 62065936 62066473 + 0.666667 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 220021 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 161.667-19 chr10 65536931 65537237 + 0.666667 NA Intergenic Intergenic -34341 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 178.333-34 chr3 47997259 47997588 + 0.666667 NA intron (NM_002375, intron 2 of 18) L1MEg|LINE|L1 91425 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 171.167-18 chr14 45031848 45032220 + 0.666667 NA intron (NR_131765, intron 10 of 19) AluSz|SINE|Alu -52082 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 139.667-3 chr1 43291941 43292451 + 0.666667 NA Intergenic Intergenic -6615 NM_001164829 149466 Hs.158963 NM_182517 ENSG00000253313 C1orf210 TEMP chromosome 1 open reading frame 210 protein-coding 140.833-18 chr14 73432134 73432612 + 0.666667 NA intron (NM_001005743, intron 1 of 12) L1M5|LINE|L1 26207 NM_001005745 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 152-48 chr8 80845692 80846085 + 0.666667 NA intron (NM_001033723, intron 1 of 8) intron (NM_001033723, intron 1 of 8) 28580 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 197.833-31 chr5 143105906 143106245 + 0.666667 NA intron (NR_146198, intron 17 of 22) intron (NR_146198, intron 17 of 22) -86425 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 142.667-17 chr11 99469026 99469347 + 0.666667 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -86959 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 322.333-4 chr22 30593231 30593929 + 0.666667 NA intron (NM_001282327, intron 2 of 16) intron (NM_001282327, intron 2 of 16) -1670 NM_014303 23481 Hs.517543 NM_014303 ENSG00000100029 PES1 NOP7|PES pescadillo ribosomal biogenesis factor 1 protein-coding 143.833-55 chr8 107543058 107543438 + 0.666667 NA Intergenic Intergenic -45330 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 184.167-8 chr10 68459084 68459531 + 0.666667 NA intron (NM_001080449, intron 4 of 20) intron (NM_001080449, intron 4 of 20) 12666 NM_001080449 1763 Hs.532446 NM_001080449 ENSG00000138346 DNA2 DNA2L|hDNA2 DNA replication helicase/nuclease 2 protein-coding 115-18 chr11 39578229 39578408 + 0.666667 NA Intergenic Intergenic 714812 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 152.5-58 chr6 141561621 141561901 + 0.666667 NA Intergenic L1MA3|LINE|L1 527038 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 186.333-25 chr17 80592379 80592921 + 0.666667 NA intron (NM_020761, intron 1 of 33) intron (NM_020761, intron 1 of 33) 47812 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 217.333-21 chr22 30825476 30825900 + 0.666667 NA intron (NM_001282741, intron 1 of 12) intron (NM_001282741, intron 1 of 12) 3172 NM_001282741 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 244-26 chr9 4225097 4225571 + 0.666667 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) -73151 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 136.667-12 chr10 76796902 76797168 + 0.666667 NA Intergenic L1M4a1|LINE|L1 -91009 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 258.667-22 chr7 98467473 98468149 + 0.666667 NA Intergenic MLT1J1|LTR|ERVL-MaLR -66721 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 193-31 chr3 72954580 72955074 + 0.666667 NA intron (NM_001080393, intron 3 of 6) intron (NM_001080393, intron 3 of 6) -41916 NM_001318026 151987 Hs.431092 NM_174907 ENSG00000163605 PPP4R2 PP4R2 protein phosphatase 4 regulatory subunit 2 protein-coding 208.333-7 chr10 129578426 129579001 + 0.666667 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 111472 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 135.667-100 chr6 97145877 97146164 + 0.666667 NA 3' UTR (NM_001350599, exon 25 of 25) 3' UTR (NM_001350599, exon 25 of 25) 135944 NM_001323261 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 176.333-55 chr7 19152795 19153291 + 0.666667 NA Intergenic MER58A|DNA|hAT-Charlie -7622 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 148.167-69 chr5 168452297 168452672 + 0.666667 NA intron (NM_001161661, intron 17 of 22) MLT1B|LTR|ERVL-MaLR -33987 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 135.833-21 chr15 61827297 61827701 + 0.666667 NA Intergenic Intergenic 97581 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 188.5-41 chr3 188393538 188394074 + 0.666667 NA intron (NM_001167671, intron 2 of 10) intron (NM_001167671, intron 2 of 10) 168401 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 143.667-2 chr1 33282652 33283016 + 0.666667 NA intron (NM_001370212, intron 5 of 7) AluSq2|SINE|Alu 13141 NM_001370212 149076 Hs.743358 NM_152493 ENSG00000160094 ZNF362 RN|lin-29 zinc finger protein 362 protein-coding 156.667-17 chr10 54059004 54059298 + 0.666667 NA intron (NM_001354411, intron 19 of 34) L1MA4A|LINE|L1 -427079 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 137.167-4 chr1 231174671 231175047 + 0.666667 NA intron (NM_001300889, intron 3 of 11) intron (NM_001300889, intron 3 of 11) 11931 NM_001300889 440730 Hs.655089 NM_001004342 ENSG00000119283 TRIM67 TNL tripartite motif containing 67 protein-coding 176.5 chr1 195161266 195161584 + 0.666667 NA Intergenic AluSc|SINE|Alu 927290 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 150.667-36 chr14 80557281 80557556 + 0.666667 NA intron (NM_152446, intron 21 of 24) MIRb|SINE|MIR -326361 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 116-61 chr3 60167156 60167401 + 0.666667 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -86369 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 138.333-7 chr1 155388892 155389157 + 0.666667 NA intron (NM_001366177, intron 7 of 27) AluSx1|SINE|Alu -42579 NR_030282 693140 NR_030282 ENSG00000283701 MIR555 MIRN555|hsa-mir-555 microRNA 555 ncRNA 126-21 chr12 85225418 85225857 + 0.666667 NA intron (NM_001079910, intron 24 of 26) intron (NM_001079910, intron 24 of 26) -54583 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 186.667-14 chr12 25928817 25929237 + 0.666667 NA Intergenic Intergenic 28558 NR_038227 100506451 Hs.560092 NR_038227 RASSF8-AS1 - RASSF8 antisense RNA 1 ncRNA 165-57 chr7 111950742 111951144 + 0.666667 NA intron (NM_001363540, intron 8 of 52) intron (NM_001363540, intron 8 of 52) 142438 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 167.833-46 chr5 26462931 26463217 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR 575512 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 157.167-21 chr13 109071826 109072094 + 0.666667 NA intron (NM_015011, intron 27 of 34) intron (NM_015011, intron 27 of 34) 95343 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 154.333-75 chr8 72893033 72893281 + 0.666667 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -115707 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 145.333-46 chr3 6048726 6049144 + 0.666667 NA Intergenic L1MA8|LINE|L1 756514 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 180-11 chr14 69096399 69096840 + 0.666667 NA intron (NM_003861, intron 5 of 8) intron (NM_003861, intron 5 of 8) 55980 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 168.167-20 chr15 71916260 71916747 + 0.666667 NA intron (NM_006901, intron 18 of 41) intron (NM_006901, intron 18 of 41) 105949 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 247.333-14 chr3 130228399 130229021 + 0.666667 NA intron (NR_027898, intron 8 of 22) L1MA4A|LINE|L1 15890 NR_027898 646300 Hs.170475 NR_027898 COL6A4P2 COL6A4 collagen type VI alpha 4 pseudogene 2 pseudo 325.667-12 chr9 33313249 33314204 + 0.666667 NA exon (NM_001318758, exon 7 of 24) exon (NM_001318758, exon 7 of 24) 23210 NM_001318758 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 167.5-24 chr14 55197951 55198388 + 0.666667 NA Intergenic Intergenic -6584 NM_001146015 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 134.667-100 chr7 49066512 49066878 + 0.666667 NA Intergenic Intergenic 142148 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 181.833 chr1 102882149 102882487 + 0.666667 NA intron (NM_001854, intron 64 of 66) intron (NM_001854, intron 64 of 66) 226178 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 138.333-18 chr11 15680797 15681042 + 0.666667 NA intron (NM_001293172, intron 1 of 2) L1ME2|LINE|L1 37034 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 160.167-49 chr4 55889306 55889678 + 0.666667 NA intron (NM_001024924, intron 11 of 18) intron (NM_001024924, intron 11 of 18) 35842 NM_178237 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 160.333-5 chr10 25210985 25211256 + 0.666667 NA intron (NM_020752, intron 1 of 10) AluSc5|SINE|Alu -34844 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 149.833-21 chr2 211527882 211528270 + 0.666667 NA intron (NM_001042599, intron 20 of 26) L1MA3|LINE|L1 898284 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 223.833-23 chr7 50905267 50905807 + 0.666667 NA Intergenic L1PA16|LINE|L1 -112084 NM_001371008 217.833-27 chr9 28327676 28328075 + 0.666667 NA intron (NM_001354574, intron 4 of 5) GA-rich|Low_complexity|Low_complexity 391430 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 253.5-15 chr2 62558178 62558870 + 0.666667 NA Intergenic Intergenic -52329 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 335.167-2 chr18 42401141 42401883 + 0.666667 NA intron (NR_046174, intron 4 of 9) intron (NR_046174, intron 4 of 9) 214844 NR_046174 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 124.5-52 chr4 104838199 104838698 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -307427 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 126.5-47 chr2 140346665 140346985 + 0.666667 NA intron (NM_018557, intron 77 of 90) intron (NM_018557, intron 77 of 90) 239860 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 145.167-72 chr7 128908988 128909396 + 0.666667 NA intron (NM_001366122, intron 1 of 39) intron (NM_001366122, intron 1 of 39) 1517 NM_001366122 375616 Hs.371746 NM_199349 ENSG00000135253 KCP CRIM2|KCP1|NET67 kielin cysteine rich BMP regulator protein-coding 143.667-101 chr8 58398390 58398757 + 0.666667 NA Intergenic Intergenic -12691 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 226.667-33 chr8 82254708 82255148 + 0.666667 NA Intergenic (ATATAAGT)n|Simple_repeat|Simple_repeat -412642 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 273.333 chr10 18048532 18049025 + 0.666667 NA Intergenic Intergenic -38216 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 240 chr1 116467632 116468156 + 0.666667 NA intron (NR_125973, intron 2 of 3) intron (NR_125973, intron 2 of 3) 10932 NR_125973 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 244.833-5 chr14 27693741 27694116 + 0.666667 NA Intergenic Intergenic -20707 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 216.333 chr1 22958448 22959044 + 0.666667 NA exon (NM_001289974, exon 6 of 8) exon (NM_001289974, exon 6 of 8) 14120 NM_001289974 646262 NM_001289974 ENSG00000215906 LACTBL1 - lactamase beta like 1 protein-coding 166.833-9 chr11 16974075 16974377 + 0.666667 NA intron (NM_001329630, intron 3 of 26) AluJb|SINE|Alu 40188 NM_175058 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 185-3 chr1 240336613 240337068 + 0.666667 NA intron (NM_001348094, intron 11 of 14) intron (NM_001348094, intron 11 of 14) 244957 NM_001348094 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 116.333-61 chr3 71840311 71840528 + 0.666667 NA Intergenic MER31A|LTR|ERV1 -55271 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 114.833-5 chr1 143270848 143271020 + 0.666667 NA Intergenic Intergenic 151658 NR_027354 645166 Hs.744183 NR_027354 LSP1P5 - LSP1 pseudogene 5 pseudo 148-83 chr9 11523286 11523620 + 0.666667 NA Intergenic Intergenic 910247 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 156.667-83 chr8 54087057 54087464 + 0.666667 NA intron (NM_001279356, intron 2 of 7) L1MB7|LINE|L1 14294 NM_001279360 10434 Hs.744046 NM_006330 ENSG00000120992 LYPLA1 APT-1|APT1|LPL-I|LPL1|hAPT1 lysophospholipase 1 protein-coding 156-24 chr14 26010158 26010587 + 0.666667 NA Intergenic L1MA3|LINE|L1 543058 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 128.833-30 chr16 28841398 28841607 + 0.666667 NA TTS (NM_003321) TTS (NM_003321) 2505 NR_039872 100616256 NR_039872 ENSG00000283845 MIR4721 - microRNA 4721 ncRNA 228-8 chr14 34287760 34288410 + 0.666667 NA Intergenic L1PB1|LINE|L1 174155 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 136.667-34 chr18 12567135 12567371 + 0.666667 NA intron (NM_020148, intron 2 of 15) L1MCa|LINE|L1 89479 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 259.333-13 chr4 35388680 35389185 + 0.666667 NA Intergenic Intergenic 855007 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 194.333-18 chr17 61512916 61513388 + 0.666667 NA Intergenic AluSz6|SINE|Alu 56664 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 154.333-57 chr5 38622540 38622819 + 0.666667 NA intron (NR_103554, intron 2 of 8) intron (NR_103554, intron 2 of 8) -27274 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 151.833-25 chr18 72875638 72876187 + 0.666667 NA intron (NR_134647, intron 1 of 2) L1MEh|LINE|L1 6872 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 184.5-52 chr8 101487216 101487769 + 0.666667 NA Intergenic Intergenic -4947 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 177.833-44 chr7 6193207 6193619 + 0.666667 NA intron (NM_001367581, intron 1 of 13) HAL1|LINE|L1 -21276 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 195-38 chr4 150325221 150325738 + 0.666667 NA intron (NM_001367550, intron 49 of 56) intron (NM_001367550, intron 49 of 56) 247034 NM_001040261 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 167-46 chr5 93460116 93460534 + 0.666667 NA intron (NR_021491, intron 4 of 5) MamGypLTR1c|LTR|Gypsy 111018 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 227.333-14 chr15 66780576 66781008 + 0.666667 NA intron (NR_027654, intron 4 of 4) intron (NR_027654, intron 4 of 4) 78556 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 199.333-12 chr15 66523850 66524291 + 0.666667 NA intron (NM_001287823, intron 7 of 17) L1M4|LINE|L1 18744 NM_001287821 55055 Hs.21331 NM_017975 ENSG00000174442 ZWILCH KNTC1AP|hZwilch zwilch kinetochore protein protein-coding 131.833-30 chr19 57033947 57034350 + 0.666667 NA Intergenic AluSx|SINE|Alu -85993 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 192.666-4 chr3 6181536 6182092 + 0.666667 NA Intergenic MLT1G1|LTR|ERVL-MaLR 623635 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 119.5-109 chrX 15817095 15817436 + 0.666667 NA intron (NM_005089, intron 8 of 10) intron (NM_005089, intron 8 of 10) 26814 NM_005089 8233 Hs.171909 NM_005089 ENSG00000169249 ZRSR2 U2AF1-RS2|U2AF1L2|U2AF1RS2|URP|ZC3H22 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 protein-coding 176.167-10 chr12 33411957 33412423 + 0.666667 NA intron (NM_198992, intron 2 of 6) intron (NM_198992, intron 2 of 6) 27629 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 169.167-31 chr3 167737306 167737735 + 0.666667 NA intron (NM_005025, intron 1 of 8) intron (NM_005025, intron 1 of 8) 1797 NM_005025 5274 Hs.478153 NM_005025 ENSG00000163536 SERPINI1 PI12|neuroserpin serpin family I member 1 protein-coding 150.5-76 chr8 72099100 72099551 + 0.666667 NA Intergenic PABL_B-int|LTR|ERV1 -23741 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 202-47 chr9 24771206 24771582 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -225497 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 141.5-22 chr12 74619538 74620119 + 0.666667 NA Intergenic ERVL-int|LTR|ERVL 81993 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 157.333-19 chr14 46651895 46652263 + 0.666667 NA promoter-TSS (NM_080746) promoter-TSS (NM_080746) -298 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 132.333-25 chr12 16161395 16161637 + 0.666667 NA Intergenic L3|LINE|CR1 116169 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 118.333-39 chr15 62111909 62112285 + 0.666667 NA Intergenic Intergenic 45120 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 167.167-3 chr1 88736893 88737225 + 0.666667 NA intron (NM_001320708, intron 1 of 20) L1M1|LINE|L1 -51855 NR_110682 101927891 Hs.637231 NR_110682 ENSG00000237505 PKN2-AS1 - PKN2 antisense RNA 1 ncRNA 135.667-71 chr3 79047478 79047916 + 0.666667 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) -28238 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 132.667-47 chr2 25775996 25776248 + 0.666667 NA intron (NM_001369346, intron 3 of 10) L1MB7|LINE|L1 18569 NM_001369347 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 182.333-46 chr4 41534722 41535053 + 0.666667 NA intron (NM_001289122, intron 3 of 25) AluJb|SINE|Alu -3270 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 186.333-42 chr3 190779454 190779946 + 0.666667 NA Intergenic L1ME1|LINE|L1 82994 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 152.167-63 chr6 152961220 152961616 + 0.666667 NA Intergenic L1MA7|LINE|L1 21623 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 131.833-61 chr6 124479501 124479826 + 0.666667 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 196658 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 122.333-96 chr6 75739790 75740083 + 0.666667 NA Intergenic Intergenic -9303 NM_001368138 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 262.333-12 chr19 28955934 28956411 + 0.666667 NA Intergenic MER72B|LTR|ERV1 -8959 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 202.5-10 chr17 59450041 59450526 + 0.666667 NA intron (NR_110813, intron 2 of 2) AluSx|SINE|Alu 76574 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 129.333-22 chr12 39658492 39658953 + 0.666667 NA intron (NM_001031748, intron 7 of 12) L1MEc|LINE|L1 32539 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 173.333-37 chr20 58403388 58403792 + 0.666667 NA intron (NR_036633, intron 1 of 3) intron (NR_036633, intron 1 of 3) 14361 NM_001195677 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 163.167-28 chr4 55515822 55516289 + 0.666667 NA intron (NM_004898, intron 1 of 22) L1MC1|LINE|L1 29877 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 150.5-65 chr5 77454868 77455313 + 0.666667 NA intron (NM_018268, intron 5 of 12) L1MB8|LINE|L1 37226 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 128-30 chr14 85922222 85922414 + 0.666667 NA Intergenic Intergenic -12360 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 137.667-55 chr2 76787173 76787407 + 0.666667 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -198675 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 127.667-84 chr6 145510633 145510858 + 0.666667 NA Intergenic L1PA15-16|LINE|L1 176132 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 115.833-75 chr7 53089165 53089387 + 0.666667 NA Intergenic AluJb|SINE|Alu 53643 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 181.833-45 chr6 45856159 45856549 + 0.666667 NA Intergenic Intergenic 81243 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 208.667-23 chr19 32388652 32389053 + 0.666667 NA Intergenic Intergenic 16687 NR_046201 400684 Hs.438766 NR_046201 ENSG00000267213 LOC400684 - uncharacterized LOC400684 ncRNA 209.833-14 chr2 73492042 73492658 + 0.666667 NA intron (NM_015120, intron 10 of 22) MIR|SINE|MIR 35247 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 125-18 chr11 7409567 7409810 + 0.666667 NA intron (NM_175733, intron 3 of 6) L1MA4A|LINE|L1 56147 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 181.833-27 chr2 158815648 158816219 + 0.666667 NA TTS (NM_001017920) TTS (NM_001017920) 20616 NM_001017920 92196 Hs.59761 NM_001017920 ENSG00000163331 DAPL1 - death associated protein like 1 protein-coding 154.667-4 chr1 190032805 190033216 + 0.666667 NA Intergenic Intergenic 443000 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 166.333-31 chr2 22350036 22350406 + 0.666667 NA Intergenic Intergenic -186258 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 193.333-17 chr13 90533171 90533610 + 0.666667 NA intron (NR_120414, intron 5 of 5) intron (NR_120414, intron 5 of 5) 40102 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 153 chr1 40615622 40615959 + 0.666667 NA Intergenic L1MEc|LINE|L1 49892 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM 3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 115.167-41 chr16 11856565 11856766 + 0.666667 NA Intergenic AluSz|SINE|Alu -5123 NM_015659 26156 Hs.401842 NM_015659 ENSG00000171490 RSL1D1 CSIG|L12|PBK1|UTP30 ribosomal L1 domain containing 1 protein-coding 123-25 chr15 71250273 71250618 + 0.666667 NA intron (NM_024817, intron 4 of 16) AluJo|SINE|Alu -61386 NR_120348 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 212.667-41 chr6 132993287 132993856 + 0.666667 NA Intergenic L1M5|LINE|L1 -94509 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 200.333-25 chr3 18635210 18635643 + 0.666667 NA Intergenic Intergenic -189834 NM_001322872 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 136.333-52 chr20 12098865 12099112 + 0.666667 NA Intergenic Intergenic 181095 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 129.667-57 chr2 199846764 199847304 + 0.666667 NA intron (NM_001363886, intron 2 of 4) intron (NM_001363886, intron 2 of 4) 4139 NM_001350854 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 157-37 chr2 14353150 14353488 + 0.666667 NA intron (NR_103814, intron 1 of 3) intron (NR_103814, intron 1 of 3) 47639 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 162-4 chr1 57402283 57402623 + 0.666667 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) 20659 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 185.667-18 chr14 53067259 53067837 + 0.666667 NA intron (NM_030637, intron 6 of 11) AluSx|SINE|Alu 85775 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 167.667-84 chr7 91023033 91023407 + 0.666667 NA intron (NM_012395, intron 9 of 13) intron (NM_012395, intron 9 of 13) -241213 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 242.667-2 chr1 87898820 87899241 + 0.666667 NA Intergenic Intergenic -527375 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 143.333-90 chr8 125631737 125632209 + 0.666667 NA Intergenic Intergenic 199764 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 135.167-7 chr1 103084321 103084669 + 0.666667 NA intron (NM_001854, intron 1 of 66) L1MB3|LINE|L1 24001 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 156.333-19 chr12 440899 441145 + 0.666667 NA intron (NM_001130148, intron 10 of 10) intron (NM_001130148, intron 10 of 10) -18917 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 192.167-27 chr22 27347970 27348761 + 0.666667 NA Intergenic Intergenic 37714 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 234.667-37 chr8 141848128 141848585 + 0.666667 NA Intergenic MLT1J2|LTR|ERVL-MaLR -62043 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 147.5-30 chr14 73670397 73670718 + 0.666667 NA intron (NM_001201366, intron 5 of 8) L1ME4b|LINE|L1 25571 NM_001201366 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 217.5-43 chr6 43594483 43594892 + 0.666667 NA intron (NM_006502, intron 4 of 10) AluSz|SINE|Alu 18502 NM_001291969 5429 Hs.655467 NM_006502 ENSG00000170734 POLH RAD30|RAD30A|XP-V|XPV DNA polymerase eta protein-coding 135.5-25 chr12 126807511 126808124 + 0.666667 NA Intergenic Intergenic -35555 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 123.667-6 chr1 153117250 153117541 + 0.666667 NA Intergenic Intergenic -3879 NM_001014450 6705 Hs.490252 NM_001014450 ENSG00000244094 SPRR2F - small proline rich protein 2F protein-coding 133-34 chr16 68330918 68331228 + 0.666667 NA intron (NR_147058, intron 6 of 18) L1ME1|LINE|L1 19959 NM_001290018 54496 Hs.640229 NM_019023 ENSG00000132600 PRMT7 SBIDDS protein arginine methyltransferase 7 protein-coding 138.333-62 chr2 107167613 107168059 + 0.666667 NA intron (NR_049853, intron 2 of 3) L1MEg1|LINE|L1 181689 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 226.167-28 chr8 36371901 36372557 + 0.666667 NA Intergenic AluJr|SINE|Alu -412145 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 146.667-10 chr1 217083719 217084099 + 0.666667 NA intron (NM_001350122, intron 1 of 9) intron (NM_001350122, intron 1 of 9) -5622 NM_001350125 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 167.333-12 chr10 95780939 95781470 + 0.666667 NA intron (NR_038444, intron 5 of 5) L1MA2|LINE|L1 25041 NM_001164182 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 204.167-10 chr14 54399646 54400158 + 0.666667 NA exon (NM_001130851, exon 2 of 7) exon (NM_001130851, exon 2 of 7) 2895 NM_005192 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 120.833-36 chr2 158206526 158206839 + 0.666667 NA intron (NM_138803, intron 11 of 13) ERVL-E-int|LTR|ERVL 40032 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 231-6 chr12 23719836 23720319 + 0.666667 NA intron (NM_152989, intron 9 of 17) intron (NM_152989, intron 9 of 17) -135491 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 136.333-10 chr10 23536058 23536327 + 0.666667 NA Intergenic Intergenic 96923 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 126-92 chr7 128244797 128245021 + 0.666667 NA intron (NM_000230, intron 1 of 2) intron (NM_000230, intron 1 of 2) 3631 NM_000230 3952 Hs.194236 NM_000230 ENSG00000174697 LEP LEPD|OB|OBS leptin protein-coding 162.667-76 chr6 158470594 158470983 + 0.666667 NA intron (NM_020245, intron 6 of 13) L2a|LINE|L2 -65648 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 123.333-36 chr14 42715067 42715582 + 0.666667 NA Intergenic L1MA6|LINE|L1 1108468 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 125.167-60 chr4 155644697 155645063 + 0.666667 NA Intergenic AluSc|SINE|Alu -21830 NM_001130687 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 154-20 chr14 25511385 25511800 + 0.666667 NA Intergenic L2c|LINE|L2 -461295 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 119-106 chrX 110689398 110689627 + 0.666667 NA intron (NR_159734, intron 9 of 12) (TATATATC)n|Simple_repeat|Simple_repeat 106305 NR_159734 91851 Hs.496587 NM_145234 ENSG00000101938 CHRDL1 CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1 chordin like 1 protein-coding 119.667-54 chr2 203526197 203526458 + 0.666667 NA intron (NM_001329728, intron 1 of 15) intron (NM_001329728, intron 1 of 15) 8974 NM_213589 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 128.833-61 chr4 5284277 5284657 + 0.666667 NA intron (NM_001306082, intron 4 of 12) intron (NM_001306082, intron 4 of 12) 232987 NM_001345969 55351 Hs.133062 NM_018401 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 146.333-90 chr7 39845375 39845609 + 0.666667 NA Intergenic Intergenic 103927 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 169.833-27 chr5 67277436 67277954 + 0.666667 NA Intergenic L1ME1|LINE|L1 -80896 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 116.667-49 chr18 59684752 59684983 + 0.666667 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 12556 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 115-87 chr9 17836423 17836623 + 0.666667 NA Intergenic L1M4|LINE|L1 257457 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 206.667-40 chr5 88319505 88319961 + 0.666667 NA intron (NR_105019, intron 6 of 7) intron (NR_105019, intron 6 of 7) 50717 NR_105019 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 167.167-42 chr3 27812290 27812578 + 0.666667 NA intron (NR_146630, intron 2 of 4) AluSp|SINE|Alu 14846 NR_146630 105377007 NR_146630 LINC01980 - long intergenic non-protein coding RNA 1980 ncRNA 173.667-58 chr6 133713906 133714362 + 0.666667 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -107013 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 204-32 chr4 149237779 149238333 + 0.666667 NA intron (NR_125887, intron 9 of 12) L1ME2|LINE|L1 83761 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 186.833-48 chr8 140301718 140302036 + 0.666667 NA intron (NM_001160372, intron 10 of 22) intron (NM_001160372, intron 10 of 22) 155867 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 229.667-27 chr5 61141116 61141760 + 0.666667 NA intron (NM_174889, intron 3 of 3) L2c|LINE|L2 -20878 NR_109908 101928630 Hs.575209 NR_109908 SMIM15-AS1 CTC-436P18.1 SMIM15 antisense RNA 1 ncRNA 216.333-49 chr8 110236301 110236889 + 0.666667 NA Intergenic LTR40a|LTR|ERVL -260824 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 187.333-52 chr3 109743697 109744168 + 0.666667 NA Intergenic Intergenic 141104 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 121.333-44 chr2 28824940 28825226 + 0.666667 NA intron (NM_001008779, intron 3 of 4) MIR|SINE|MIR 9086 NM_001008779 245711 Hs.511956 NM_182756 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 118.667-10 chr1 205610366 205610568 + 0.666667 NA 3' UTR (NM_001973, exon 5 of 5) 3' UTR (NM_001973, exon 5 of 5) 22405 NM_021795 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ETS transcription factor ELK4 protein-coding 177-56 chr5 136811584 136811961 + 0.666667 NA Intergenic Intergenic -316425 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 117.667-106 chr5 110473542 110473844 + 0.666667 NA intron (NM_001039763, intron 12 of 13) L1MA4|LINE|L1 40222 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 119.667-91 chr7 93024976 93025450 + 0.666667 NA Intergenic Intergenic 92766 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 151.5-66 chr6 157318499 157319104 + 0.666667 NA exon (NM_018452, exon 3 of 4) exon (NM_018452, exon 3 of 4) 5458 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 114-100 chr8 121934500 121934768 + 0.666667 NA Intergenic AluSq|SINE|Alu -293194 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 201.5-23 chr20 41544257 41544642 + 0.666667 NA intron (NM_032221, intron 2 of 36) intron (NM_032221, intron 2 of 36) 73928 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 184.667-5 chr10 15701745 15702122 + 0.666667 NA intron (NM_001291494, intron 2 of 28) intron (NM_001291494, intron 2 of 28) 17989 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 114.5-90 chr8 52587412 52587629 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie -22090 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 138.667-97 chr7 91067850 91068239 + 0.666667 NA intron (NM_012395, intron 10 of 13) intron (NM_012395, intron 10 of 13) -196389 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 162.833-28 chr22 24798411 24798783 + 0.666667 NA Intergenic Intergenic -7614 NM_001098497 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 135.667-30 chr13 43267914 43268281 + 0.666667 NA intron (NM_001347966, intron 14 of 17) intron (NM_001347966, intron 14 of 17) 154932 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 149.333-70 chr5 3899298 3899654 + 0.666667 NA Intergenic Intergenic 303644 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 180-9 chr13 85143296 85143760 + 0.666667 NA intron (NR_126383, intron 1 of 5) AluSz|SINE|Alu 4529 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 159.833-58 chr9 88043324 88043730 + 0.666667 NA Intergenic AluY|SINE|Alu 34373 NR_135137 102724156 Hs.633031 NR_135137 LOC102724156 - uncharacterized LOC102724156 ncRNA 178.667-75 chr9 85961373 85961779 + 0.666667 NA intron (NM_024635, intron 5 of 22) L2|LINE|L2 20047 NM_001321882 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 162.667-28 chr17 19790634 19790920 + 0.666667 NA intron (NM_014683, intron 20 of 26) L1M1|LINE|L1 -42479 NM_000691 218 Hs.531682 NM_000691 ENSG00000108602 ALDH3A1 ALDH3|ALDHIII aldehyde dehydrogenase 3 family member A1 protein-coding 190.333-12 chr12 30903614 30903910 + 0.666667 NA Intergenic Intergenic -22986 NM_001370302 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 136.167-4 chr1 76083736 76083997 + 0.666667 NA intron (NM_001349108, intron 1 of 3) Charlie5|DNA|hAT-Charlie 9120 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 140-83 chr8 136126501 136126827 + 0.666667 NA Intergenic Intergenic -404134 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 113.667-38 chr14 54771296 54771566 + 0.666667 NA intron (NM_015589, intron 8 of 11) MIR|SINE|MIR 16598 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 117.333-27 chr14 37520461 37520855 + 0.666667 NA intron (NM_138731, intron 13 of 13) intron (NM_138731, intron 13 of 13) 74591 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 245-19 chr8 85895611 85896145 + 0.666667 NA Intergenic L2c|LINE|L2 -67936 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 131-58 chr5 123308913 123309289 + 0.666667 NA Intergenic L1M5|LINE|L1 114491 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 128-92 chr8 126300940 126301203 + 0.666667 NA Intergenic Intergenic -24424 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 144.333-97 chr9 110859746 110860215 + 0.666667 NA Intergenic Intergenic 131718 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 143.667-68 chr3 50117081 50117501 + 0.666667 NA non-coding (NR_036627, exon 23 of 24) non-coding (NR_036627, exon 23 of 24) -16303 NR_045388 100775107 Hs.439480 NR_045388 ENSG00000281691 RBM5-AS1 LUST RBM5 antisense RNA 1 ncRNA 133.667-99 chr8 136530026 136530341 + 0.666667 NA promoter-TSS (NR_147196) promoter-TSS (NR_147196) -615 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 144.667-95 chr8 99781200 99781509 + 0.666667 NA intron (NM_017890, intron 42 of 61) intron (NM_017890, intron 42 of 61) 112353 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 121.833-66 chr6 2516865 2517253 + 0.666667 NA Intergenic Intergenic -117441 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 215.333-43 chr6 37190144 37190657 + 0.666667 NA Intergenic AluJr4|SINE|Alu 20248 NM_001243186 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 186.333-39 chr22 41841633 41842102 + 0.666667 NA intron (NR_103834, intron 1 of 21) intron (NR_103834, intron 1 of 21) -7202 NR_157279 112637020 NR_157279 SREBF2-AS1 821D11.7|RP5 SREBF2 antisense RNA 1 ncRNA 167.667-83 chr7 33457237 33457596 + 0.666667 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 327852 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 119.833-9 chr1 162940518 162940870 + 0.666667 NA Intergenic MIR3|SINE|MIR -71879 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 149-45 chr2 181219212 181219658 + 0.666667 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 86217 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 140.5-56 chr4 136345436 136345727 + 0.666667 NA Intergenic MLT1E3|LTR|ERVL-MaLR -431901 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 197.333-32 chr22 27751315 27751677 + 0.666667 NA intron (NM_002430, intron 1 of 1) L2c|LINE|L2 50260 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 148.5-11 chr11 20155264 20155603 + 0.666667 NA TTS (NM_001029865) TTS (NM_001029865) 5042 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 139.333-51 chr2 215552418 215552794 + 0.666667 NA Intergenic Intergenic 98899 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 172.833-11 chr13 93575327 93575751 + 0.666667 NA intron (NM_005708, intron 2 of 8) MER5A|DNA|hAT-Charlie 282934 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 132-49 chr21 45068294 45068566 + 0.666667 NA Intergenic L1M5|LINE|L1 4781 NR_027292 728039 Hs.309203 NM_032653 ENSG00000235374 SSR4P1 C21orf122|PRED57|PRED90 signal sequence receptor subunit 4 pseudogene 1 pseudo 146.167-19 chr14 75500721 75500973 + 0.666667 NA Intergenic HAL1ME|LINE|L1 -21622 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 147-35 chr2 57430704 57431067 + 0.666667 NA Intergenic MIRb|SINE|MIR -476766 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 153.333-41 chr2 169999568 169999943 + 0.666667 NA intron (NM_172070, intron 26 of 38) intron (NM_172070, intron 26 of 38) 172247 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 172.5-2 chr1 48049515 48049949 + 0.666667 NA Intergenic Intergenic -52347 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 193.333-23 chr17 60382293 60382684 + 0.666667 NA intron (NM_032582, intron 1 of 33) HAL1|LINE|L1 9645 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 126.333-27 chr13 112927470 112927753 + 0.666667 NA Intergenic L1MC5|LINE|L1 41027 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 145-7 chr1 168626136 168626462 + 0.666667 NA Intergenic Intergenic 49694 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 155-83 chrX 68700154 68700508 + 0.666667 NA intron (NM_001142504, intron 1 of 13) MIRc|SINE|MIR 6692 NM_001142504 9754 Hs.95140 NM_014725 ENSG00000130052 STARD8 ARHGAP38|DLC3|STARTGAP3 StAR related lipid transfer domain containing 8 protein-coding 160.167-20 chr16 73222023 73222266 + 0.666667 NA Intergenic Intergenic -77697 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 139-46 chr3 196673853 196674118 + 0.666667 NA Intergenic L1MA3|LINE|L1 34291 NM_198565 375387 Hs.702186 NM_198565 ENSG00000174004 NRROS ELLP3030|GARPL1|LRRC33|UNQ3030 negative regulator of reactive oxygen species protein-coding 163.667-58 chr4 101221930 101222337 + 0.666667 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) 18739 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 212.833-22 chr5 107757778 107758134 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie -87019 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 137.667-16 chr11 93905913 93906159 + 0.666667 NA Intergenic FRAM|SINE|Alu -55418 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 121.167-88 chr8 110345576 110346125 + 0.666667 NA Intergenic Intergenic -370079 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 140.167-42 chr22 27803600 27803915 + 0.666667 NA Intergenic A-rich|Low_complexity|Low_complexity -2001 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 132.833-47 chr3 51526121 51526437 + 0.666667 NA Intergenic L1MB3|LINE|L1 -12440 NM_001322253 23132 Hs.105399 NM_015106 ENSG00000164080 RAD54L2 ARIP4|HSPC325|SRISNF2L RAD54 like 2 protein-coding 186.667-18 chr12 127535578 127535907 + 0.666667 NA Intergenic L1PREC2|LINE|L1 100725 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 260.667-3 chr13 79298498 79298919 + 0.666667 NA Intergenic L2|LINE|L2 107513 NM_001286631 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 135.5-50 chr20 25593809 25594041 + 0.666667 NA Intergenic Intergenic -8394 NM_001318226 22981 Hs.631508 NM_025176 ENSG00000101004 NINL NLP ninein like protein-coding 214.5-9 chr14 23450778 23451134 + 0.666667 NA Intergenic L1MB7|LINE|L1 -15296 NM_000257 4625 Hs.719946 NM_000257 ENSG00000092054 MYH7 CMD1S|CMH1|MPD1|MYHCB|SPMD|SPMM myosin heavy chain 7 protein-coding 160.167-35 chr22 19266277 19266701 + 0.666667 NA intron (NM_007098, intron 2 of 32) L1PA8|LINE|L1 25230 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 186.667-25 chr15 63057764 63058174 + 0.666667 NA intron (NM_000366, intron 3 of 9) intron (NM_000366, intron 3 of 9) -8582 NR_147233 111064646 Hs.602995 NR_147233 TPM1-AS TPM1-AS1 TPM1 antisense RNA ncRNA 167.667-11 chr10 85808979 85809283 + 0.666667 NA intron (NM_017551, intron 8 of 15) L1MEg|LINE|L1 231400 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 190-51 chr5 5541782 5542282 + 0.666667 NA Intergenic L1ME3A|LINE|L1 119355 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 188.5-36 chr20 33158242 33158699 + 0.666667 NA Intergenic MIRb|SINE|MIR -3300 NM_001319164 140683 Hs.125960 NM_080574 ENSG00000131050 BPIFA2 C20orf70|PSP|SPLUNC2|bA49G10.1 BPI fold containing family A member 2 protein-coding 154.667-40 chr2 214473351 214473700 + 0.666667 NA intron (NM_001080500, intron 3 of 3) MLT1J2|LTR|ERVL-MaLR -36657 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 124.167-86 chr8 3231019 3231238 + 0.666667 NA intron (NM_033225, intron 26 of 69) intron (NM_033225, intron 26 of 69) -502677 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 141-89 chr8 138202750 138202978 + 0.666667 NA intron (NM_015912, intron 7 of 19) intron (NM_015912, intron 7 of 19) -119319 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 210.333-19 chr2 215191308 215191777 + 0.666667 NA Intergenic Intergenic -52916 NR_103740 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 288.5-12 chr6 40460305 40461008 + 0.666667 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 82319 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 133.5-77 chr7 95803189 95803671 + 0.666667 NA intron (NM_004411, intron 1 of 16) intron (NM_004411, intron 1 of 16) 30924 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 150.5-62 chr5 26632792 26633253 + 0.666667 NA Intergenic Intergenic 405564 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 160.667-4 chr1 76640940 76641370 + 0.666667 NA Intergenic Intergenic 138112 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 143-14 chr11 94917285 94917529 + 0.666667 NA Intergenic Intergenic 56149 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 115.667-67 chr21 16002000 16002295 + 0.666667 NA Intergenic Intergenic -68341 NR_136541 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 188-39 chr3 95269968 95270376 + 0.666667 NA Intergenic MER54A|LTR|ERVL 331909 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 255-17 chr4 117948029 117948524 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger -85046 NR_146513 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 113.333-83 chr4 109802550 109802872 + 0.666667 NA promoter-TSS (NM_001318057) promoter-TSS (NM_001318057) -486 NM_000204 3426 Hs.312485 NM_000204 ENSG00000205403 CFI AHUS3|ARMD13|C3BINA|C3b-INA|FI|IF|KAF complement factor I protein-coding 122.333-38 chr15 53570045 53570386 + 0.666667 NA intron (NM_182758, intron 18 of 19) L1MA8|LINE|L1 -29112 NM_001277176 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 124-44 chr18 1216041 1216316 + 0.666667 NA Intergenic Intergenic 143451 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 123.833-72 chr9 2105670 2105908 + 0.666667 NA intron (NM_001289397, intron 23 of 32) intron (NM_001289397, intron 23 of 32) -51873 NM_001289398 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 194-3 chr1 85424430 85424885 + 0.666667 NA intron (NM_001134445, intron 2 of 6) intron (NM_001134445, intron 2 of 6) -20151 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 132.667-12 chr10 58692248 58692529 + 0.666667 NA intron (NM_001080512, intron 2 of 20) Tigger6b|DNA|TcMar-Tigger -22627 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 123.667-11 chr10 55221251 55221549 + 0.666667 NA intron (NM_001354404, intron 2 of 34) MER63D|DNA|hAT-Blackjack -377642 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 130.167-57 chr5 92484674 92485029 + 0.666667 NA Intergenic Intergenic 1086492 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 191.834-9 chrX 44458279 44459114 + 0.666667 NA Intergenic Intergenic 84163 NM_173794 139341 Hs.7549 NM_173794 ENSG00000069509 FUNDC1 - FUN14 domain containing 1 protein-coding 217.5-15 chr15 98284012 98284372 + 0.666667 NA Intergenic Intergenic 47366 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 117-56 chr2 189735734 189736043 + 0.666667 NA intron (NM_144708, intron 17 of 22) intron (NM_144708, intron 17 of 22) -26892 NR_102429 101409258 Hs.738558 NR_102429 OSGEPL1-AS1 - OSGEPL1 antisense RNA 1 ncRNA 130.833-51 chr4 73809513 73809910 + 0.666667 NA Intergenic L1M3c|LINE|L1 -26967 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 118.833-36 chr2 63380599 63380777 + 0.666667 NA intron (NR_148704, intron 12 of 18) AluSz|SINE|Alu 57319 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 115.167-54 chr2 57711219 57711514 + 0.666667 NA Intergenic Intergenic -196285 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 127.667-88 chr7 102735110 102735396 + 0.666667 NA intron (NR_146066, intron 1 of 11) L1MC1|LINE|L1 13441 NR_146066 100133005 NR_146066 RASA4DP - RAS p21 protein activator 4CD, pseudogene pseudo 119-53 chr2 96509076 96509387 + 0.666667 NA Intergenic L1ME3|LINE|L1 -1122 NR_104346 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 214-19 chr2 36680099 36680512 + 0.666667 NA Intergenic L1MEf|LINE|L1 -16385 NM_001177969 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 140.5-24 chr15 56662052 56662421 + 0.666667 NA intron (NM_001002843, intron 15 of 20) intron (NM_001002843, intron 15 of 20) 71850 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 198-17 chr14 81221278 81221800 + 0.666667 NA promoter-TSS (NM_001278940) promoter-TSS (NM_001278940) -149 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 128.167-16 chr11 115321198 115321543 + 0.666667 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -12207 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 120.5-85 chr8 63856504 63856780 + 0.666667 NA TTS (NR_125826) TTS (NR_125826) 87212 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 188.833-13 chr14 50476905 50477327 + 0.666667 NA intron (NM_198794, intron 6 of 31) L1ME4a|LINE|L1 55453 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 146.333-20 chr11 101770205 101770662 + 0.666667 NA Intergenic Intergenic -144577 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 117.5-70 chr7 103303388 103303696 + 0.666667 NA intron (NM_004279, intron 4 of 12) intron (NM_004279, intron 4 of 12) 6107 NM_004279 9512 Hs.184211 NM_004279 ENSG00000105819 PMPCB Beta-MPP|MPP11|MPPB|MPPP52|P-52 peptidase, mitochondrial processing beta subunit protein-coding 115.667-95 chr5 51032372 51032698 + 0.666667 NA Intergenic Intergenic -62348 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 137-86 chr7 23915369 23915718 + 0.666667 NA Intergenic Intergenic 205324 NM_001260505 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 130.667-10 chr10 107999920 108000171 + 0.666667 NA intron (NR_125760, intron 4 of 4) AluSq2|SINE|Alu 69248 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 160.667-32 chr17 69981993 69982281 + 0.666667 NA intron (NR_110875, intron 3 of 4) intron (NR_110875, intron 3 of 4) 20430 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 134.333-73 chr3 3369367 3369666 + 0.666667 NA Intergenic L1ME4b|LINE|L1 -189799 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 161-4 chr1 188383982 188384324 + 0.666667 NA Intergenic L2a|LINE|L2 940525 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 156.333-40 chr17 64320063 64320428 + 0.666667 NA 3' UTR (NM_000442, exon 16 of 16) 3' UTR (NM_000442, exon 16 of 16) -56985 NM_001288732 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 128.5-56 chr4 45941406 45941698 + 0.666667 NA Intergenic Intergenic 182502 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 149-34 chr2 18913640 18913972 + 0.666667 NA Intergenic Intergenic 113165 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 115.333-15 chr11 100266096 100266503 + 0.666667 NA intron (NM_001243270, intron 16 of 23) intron (NM_001243270, intron 16 of 23) -420989 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 117.5-19 chr16 48098836 48099159 + 0.666667 NA intron (NM_033226, intron 21 of 28) intron (NM_033226, intron 21 of 28) 47773 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 113.5-70 chr4 134915524 134915918 + 0.666667 NA Intergenic Intergenic 207838 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 147.333-10 chr10 83371532 83371911 + 0.666667 NA Intergenic L2b|LINE|L2 305368 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 249.667-45 chr8 126379770 126380449 + 0.666667 NA Intergenic Intergenic 54614 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 144.667-82 chr5 126114437 126115097 + 0.666667 NA Intergenic Intergenic -64810 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 141.333-19 chr12 19441985 19442235 + 0.666667 NA intron (NM_001267043, intron 1 of 8) intron (NM_001267043, intron 1 of 8) 1511 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 197.333-41 chr4 65658195 65658707 + 0.666667 NA intron (NM_001281767, intron 1 of 16) intron (NM_001281767, intron 1 of 16) 11037 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 179.667-21 chr18 9276215 9276580 + 0.666667 NA intron (NM_001204056, intron 10 of 11) MIR3|SINE|MIR -58376 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 132-61 chr4 55286295 55286659 + 0.666667 NA Intergenic MIRb|SINE|MIR -59765 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 176-38 chr5 128314739 128315431 + 0.666667 NA intron (NM_001999, intron 36 of 64) Looper|DNA|PiggyBac 223160 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 132.333-30 chr12 64620379 64620683 + 0.666667 NA intron (NR_040718, intron 1 of 3) intron (NR_040718, intron 1 of 3) -1978 NR_030347 693129 NR_030347 ENSG00000207546 MIR548C MIRN548C microRNA 548c ncRNA 141-81 chr7 47075806 47076360 + 0.666667 NA Intergenic Intergenic -378961 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 320.667-7 chr2 76435956 76436689 + 0.666667 NA Intergenic Intergenic -549643 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 158.667-21 chr12 66001927 66002187 + 0.666667 NA Intergenic L1ME3B|LINE|L1 21669 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 114.667-4 chr1 91451016 91451321 + 0.666667 NA Intergenic AluSx|SINE|Alu -46331 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 172.333-72 chr8 55470954 55471233 + 0.666667 NA intron (NM_052898, intron 2 of 2) MER3|DNA|hAT-Charlie -15772 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 228.667-19 chr2 41416951 41417482 + 0.666667 NA Intergenic ERVL-B4-int|LTR|ERVL -460339 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 127.5-4 chr1 85248882 85249371 + 0.666667 NA TTS (NM_198077) TTS (NM_198077) 10536 NR_024113 148423 Hs.26226 NM_198077 ENSG00000162642 C1orf52 gm117 chromosome 1 open reading frame 52 protein-coding 229.167-34 chr7 84747851 84748532 + 0.666667 NA Intergenic Intergenic 215715 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 202.333-41 chr6 116702562 116702941 + 0.666667 NA intron (NM_001366310, intron 6 of 8) MIRb|SINE|MIR 21540 NM_001366304 3841 Hs.182971 NM_002269 ENSG00000196911 KPNA5 IPOA6|SRP6 karyopherin subunit alpha 5 protein-coding 137.167-33 chr2 72838668 72839061 + 0.666667 NA Intergenic AluY|SINE|Alu -12831 NM_001321731 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 178.5-67 chr6 153736825 153737133 + 0.666667 NA Intergenic Intergenic -273517 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 212-45 chr9 138042624 138043003 + 0.666667 NA non-coding (NR_121582, exon 3 of 3) non-coding (NR_121582, exon 3 of 3) 2258 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 143 chr1 92428158 92428409 + 0.666667 NA Intergenic L1MB4|LINE|L1 55671 NM_001127215 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 117.5-36 chr3 1940592 1941053 + 0.666667 NA Intergenic Intergenic -157981 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 140.667-64 chr4 175431062 175431462 + 0.666667 NA Intergenic Intergenic 356414 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 122-45 chr3 3980425 3980739 + 0.666667 NA Intergenic AluSq|SINE|Alu -179707 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 132-87 chr7 38225310 38225770 + 0.666667 NA intron (NM_001363347, intron 7 of 8) L1MB7|LINE|L1 47295 NM_001363340 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 116.5-97 chr9 82992451 82992721 + 0.666667 NA intron (NM_152573, intron 15 of 16) intron (NM_152573, intron 15 of 16) 70556 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 180.333-29 chr2 21840753 21841154 + 0.666667 NA Intergenic THE1D-int|LTR|ERVL-MaLR -130301 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 150.333-39 chr13 101569535 101569962 + 0.666667 NA intron (NM_001271754, intron 2 of 10) L1MC4a|LINE|L1 79796 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 128.667-51 chr17 27406916 27407417 + 0.666667 NA Intergenic Intergenic -10839 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family member 3 pseudogene 5 pseudo 133.667-48 chr2 59878790 59879306 + 0.666667 NA Intergenic Intergenic 503988 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 145.833-22 chr13 30575484 30575716 + 0.666667 NA intron (NM_001370340, intron 1 of 4) intron (NM_001370340, intron 1 of 4) 41987 NM_001370340 3146 Hs.434102 NM_002128 ENSG00000189403 HMGB1 HMG-1|HMG1|HMG3|SBP-1 high mobility group box 1 protein-coding 158.333-73 chr8 114595096 114595443 + 0.666667 NA Intergenic Intergenic 1072744 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 125-33 chr17 62023658 62023953 + 0.666667 NA intron (NM_005121, intron 8 of 29) intron (NM_005121, intron 8 of 29) 41473 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 115.5-94 chr7 100377874 100378243 + 0.666667 NA intron (NM_178273, intron 2 of 4) L1M5|LINE|L1 4571 NM_178272 29992 Hs.444407 NM_013439 ENSG00000085514 PILRA FDF03 paired immunoglobin like type 2 receptor alpha protein-coding 208.333-15 chr15 87971438 87972007 + 0.666667 NA intron (NM_001320135, intron 12 of 15) intron (NM_001320135, intron 12 of 15) -25454 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 164.833-21 chr2 20605617 20605875 + 0.666667 NA Intergenic L1MB5|LINE|L1 -13198 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 129.333-5 chr1 222795958 222796240 + 0.666667 NA Intergenic MER52A|LTR|ERV1 -18940 NM_001350630 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 217.167-6 chr14 60339378 60339798 + 0.666667 NA Intergenic Intergenic 16392 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 204-7 chr14 64425119 64425478 + 0.666667 NA intron (NM_005956, intron 9 of 27) AluSp|SINE|Alu 36945 NM_001364837 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 169.833-32 chr7 7152306 7152677 + 0.666667 NA Intergenic AluSx1|SINE|Alu -30124 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 291.667-5 chr10 43389429 43390014 + 0.666667 NA intron (NM_001098208, intron 2 of 2) intron (NM_001098208, intron 2 of 2) 7110 NM_001098208 3185 Hs.808 NM_004966 ENSG00000169813 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 183-22 chr2 61795798 61796165 + 0.666667 NA Intergenic L2b|LINE|L2 58079 NM_032180 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 180-44 chr5 134751562 134751994 + 0.666667 NA 3' UTR (NM_001745, exon 4 of 4) 3' UTR (NM_001745, exon 4 of 4) -7001 NM_001300860 9879 Hs.406549 NM_014829 ENSG00000145833 DDX46 PRPF5|Prp5 DEAD-box helicase 46 protein-coding 292-9 chr3 100981298 100982238 + 0.666667 NA intron (NM_001349332, intron 1 of 35) intron (NM_001349332, intron 1 of 35) 11722 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 169.667-54 chr4 22731858 22732283 + 0.666667 NA intron (NR_102357, intron 1 of 4) HAL1|LINE|L1 17981 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 138.833-18 chr13 64371536 64371913 + 0.666667 NA Intergenic L1M1|LINE|L1 -295713 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 173-35 chr3 63509138 63509595 + 0.666667 NA intron (NM_001130003, intron 3 of 5) (AT)n|Simple_repeat|Simple_repeat 40685 NR_046677 100874016 Hs.441275 NR_046677 ENSG00000241359 SYNPR-AS1 - SYNPR antisense RNA 1 ncRNA 135.833-54 chr5 15719658 15720143 + 0.666667 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -104898 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 358-4 chr14 57487469 57488455 + 0.666667 NA intron (NM_001283060, intron 2 of 5) MLT1O|LTR|ERVL-MaLR 5895 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 236-11 chr18 53407691 53408254 + 0.666667 NA intron (NM_005215, intron 19 of 28) intron (NM_005215, intron 19 of 28) -160475 NR_110798 102724651 Hs.123442 NR_110798 ENSG00000263438 LINC01919 - long intergenic non-protein coding RNA 1919 ncRNA 152-58 chrX 38707101 38707355 + 0.666667 NA Intergenic MER30|DNA|hAT-Charlie -94204 NM_001098791 58526 Hs.522605 NM_021242 ENSG00000165175 MID1IP1 G12-like|MIG12|S14R|STRAIT11499|THRSPL MID1 interacting protein 1 protein-coding 136-47 chr3 11347384 11347892 + 0.666667 NA intron (NM_001349237, intron 11 of 17) intron (NM_001349237, intron 11 of 17) 75241 NM_001349236 10533 Hs.38032 NM_006395 ENSG00000197548 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 139.833-78 chr8 135999187 135999629 + 0.666667 NA Intergenic Intergenic -531390 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 167.833-45 chr5 22487066 22487398 + 0.666667 NA intron (NM_004061, intron 2 of 14) AluSx|SINE|Alu -273382 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 149.667-60 chr4 182246196 182246447 + 0.666667 NA intron (NM_001080477, intron 1 of 27) intron (NM_001080477, intron 1 of 27) 2919 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 135.5-2 chr1 51147010 51147330 + 0.666667 NA intron (NM_001136508, intron 4 of 4) intron (NM_001136508, intron 4 of 4) 44942 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 127-101 chr9 105658294 105658662 + 0.666667 NA Intergenic Intergenic -3979 NM_005421 6887 Hs.247978 NM_005421 ENSG00000186051 TAL2 - TAL bHLH transcription factor 2 protein-coding 150.333-10 chr10 36206632 36206965 + 0.666667 NA Intergenic Intergenic 428496 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 151.667-26 chr17 59544963 59545350 + 0.666667 NA Intergenic Intergenic -18299 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 203.667-27 chr3 85260442 85260863 + 0.666667 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -125058 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 169.333-42 chr20 44350470 44350823 + 0.666667 NA intron (NM_178491, intron 4 of 4) intron (NM_178491, intron 4 of 4) -5053 NM_001030003 3172 Hs.116462 NM_000457 ENSG00000101076 HNF4A FRTS4|HNF4|HNF4a7|HNF4a8|HNF4a9|HNF4alpha|MODY|MODY1|NR2A1|NR2A21|TCF|TCF14 hepatocyte nuclear factor 4 alpha protein-coding 123.667-78 chr4 73759846 73760149 + 0.666667 NA Intergenic Intergenic 19428 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 170.667-47 chr4 54611858 54612479 + 0.666667 NA Intergenic AluJb|SINE|Alu -5037 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 160.167-29 chr2 226145855 226146110 + 0.666667 NA intron (NR_046102, intron 2 of 6) intron (NR_046102, intron 2 of 6) 3188 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 137.333-91 chr7 24757011 24757286 + 0.666667 NA intron (NM_004403, intron 1 of 9) CpG 316 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 115.333-89 chr5 163370188 163370399 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -67278 NM_001364023 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 203.333-30 chr3 50089874 50090210 + 0.666667 NA intron (NM_005778, intron 1 of 24) intron (NM_005778, intron 1 of 24) 1123 NM_005778 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA-15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 140.667-47 chr2 228975210 228975458 + 0.666667 NA Intergenic L1PA16|LINE|L1 256758 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 184.5-50 chr8 24167416 24167854 + 0.666667 NA Intergenic Intergenic -126405 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 249.5-2 chr1 105468877 105469352 + 0.666667 NA Intergenic L1ME3Cz|LINE|L1 149821 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 180-16 chr17 49305518 49305866 + 0.666667 NA intron (NM_014897, intron 5 of 5) L2c|LINE|L2 -17238 NR_106745 102465137 NR_106745 ENSG00000273500 MIR6129 hsa-mir-6129 microRNA 6129 ncRNA 190.5-28 chr18 9602913 9603380 + 0.666667 NA intron (NM_001042388, intron 2 of 19) intron (NM_001042388, intron 2 of 19) 11413 NM_001042388 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 135.5-45 chr2 103505751 103506017 + 0.666667 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -521455 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 177.167-40 chr5 171947676 171948096 + 0.666667 NA intron (NM_033644, intron 1 of 12) AluJr|SINE|Alu 58987 NM_033644 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 124.667-94 chr5 40293102 40293363 + 0.666667 NA Intergenic Intergenic 240941 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 162.5-31 chr2 77096793 77097236 + 0.666667 NA intron (NR_146416, intron 1 of 1) L1ME3C|LINE|L1 111049 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 130.667-60 chr4 20866691 20866933 + 0.666667 NA intron (NM_147182, intron 2 of 8) L1PA16|LINE|L1 15898 NM_025221 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 213.167-9 chr15 73060162 73060858 + 0.666667 NA intron (NM_002499, intron 1 of 28) AluSz|SINE|Alu 8026 NM_001172624 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 131.167-35 chr18 3802794 3803221 + 0.666667 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 42351 NM_001242765 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 190-52 chr5 36193157 36193615 + 0.666667 NA 3' UTR (NM_153013, exon 12 of 12) 3' UTR (NM_153013, exon 12 of 12) 41275 NM_032637 6502 Hs.23348 NM_005983 ENSG00000145604 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase associated protein 2 protein-coding 122.333-113 chr8 111220364 111220630 + 0.666667 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) 15706 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 215.667-38 chr5 18256380 18256840 + 0.666667 NA Intergenic Intergenic 449336 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 198.833-6 chr12 129594547 129594921 + 0.666667 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 309291 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 126.167-57 chr3 142781490 142781783 + 0.666667 NA intron (NM_001251845, intron 6 of 12) intron (NM_001251845, intron 6 of 12) 57212 NM_003304 7220 Hs.250687 NM_003304 ENSG00000144935 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel subfamily C member 1 protein-coding 146.167-39 chr3 128037333 128037660 + 0.666667 NA Intergenic L1MB7|LINE|L1 -14941 NM_013336 29927 Hs.518236 NM_013336 ENSG00000058262 SEC61A1 HNFJ4|HSEC61|SEC61|SEC61A SEC61 translocon alpha 1 subunit protein-coding 135-87 chr6 139653665 139654026 + 0.666667 NA Intergenic Intergenic -117228 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 209.167-12 chr15 62814148 62814599 + 0.666667 NA intron (NM_015059, intron 49 of 55) intron (NM_015059, intron 49 of 55) -9584 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 128.5-17 chr12 1815744 1815983 + 0.666667 NA intron (NM_172364, intron 26 of 37).2 L3b|LINE|CR1 -4404 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 157.833-53 chr5 11264036 11264567 + 0.666667 NA intron (NM_001288715, intron 8 of 20) MLT1C|LTR|ERVL-MaLR 324616 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 121.333-34 chr16 69137539 69137829 + 0.666667 NA intron (NM_001318391, intron 3 of 16) intron (NM_001318391, intron 3 of 16) 5035 NM_032830 84916 Hs.461113 NM_032830 ENSG00000141076 UTP4 CIRH1A|CIRHIN|NAIC|TEX292 UTP4 small subunit processome component protein-coding 325.666-3 chr4 30483065 30483935 + 0.666667 NA Intergenic Intergenic -236869 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 240.167-9 chr19 36995251 36995623 + 0.666667 NA intron (NM_001204839, intron 8 of 8) L1MB7|LINE|L1 79105 NM_001204837 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 150.5-89 chrX 105980910 105981249 + 0.666667 NA Intergenic L1PA13|LINE|L1 57648 NM_000354 6906 Hs.76838 NM_000354 ENSG00000123561 SERPINA7 TBG|TBGQTL serpin family A member 7 protein-coding 131-60 chr6 24899033 24899370 + 0.666667 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) 11533 NM_001346032 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 193.667-36 chr3 99103682 99104302 + 0.666667 NA Intergenic Intergenic -202297 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 202.333-21 chr2 35397672 35398266 + 0.666667 NA Intergenic LTR40b|LTR|ERVL -73436 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 136.333-98 chr8 104789851 104790106 + 0.666667 NA Intergenic Intergenic -200954 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 125-105 chr9 32869780 32870001 + 0.666667 NA Intergenic Intergenic 86350 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 122-32 chr19 30214672 30214927 + 0.666667 NA Intergenic Intergenic -157585 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 133-87 chr7 5474426 5474881 + 0.666667 NA intron (NM_001363441, intron 4 of 4) intron (NM_001363441, intron 4 of 4) 21264 NR_030318 693174 NR_030318 ENSG00000207973 MIR589 MIRN589|hsa-mir-589|mir-589 microRNA 589 ncRNA 122-26 chr17 30246543 30246857 + 0.666667 NA Intergenic L1MEd|LINE|L1 -11003 NM_001045 6532 Hs.29792 NM_001045 ENSG00000108576 SLC6A4 5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT solute carrier family 6 member 4 protein-coding 151-69 chr7 52982044 52982294 + 0.666667 NA Intergenic Intergenic -53464 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 205.167-27 chr3 9634821 9635130 + 0.666667 NA Intergenic AluY|SINE|Alu -14530 NM_001077526 64419 Hs.475382 NM_022485 ENSG00000163719 MTMR14 C3orf29 myotubularin related protein 14 protein-coding 197.667-61 chr9 30755023 30755518 + 0.666667 NA Intergenic LTR33B|LTR|ERVL -346816 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 228-31 chr6 158118682 158119066 + 0.666667 NA intron (NM_032861, intron 12 of 16) intron (NM_032861, intron 12 of 16) 49388 NM_032861 84947 Hs.154706 NM_032861 ENSG00000122335 SERAC1 - serine active site containing 1 protein-coding 196.333-33 chr4 81151945 81152580 + 0.666667 NA intron (NM_006259, intron 7 of 18) intron (NM_006259, intron 7 of 18) 1895 NM_001282481 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 196.333-20 chr2 124458317 124458906 + 0.666667 NA intron (NM_130773, intron 6 of 23) L1PB1|LINE|L1 433324 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 156.333-75 chr5 62788533 62789014 + 0.666667 NA Intergenic L2a|LINE|L2 209954 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 253.167-9 chr4 98358359 98359172 + 0.666667 NA intron (NM_001100430, intron 4 of 12) L1MD2|LINE|L1 97381 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 154.667-66 chr7 32252617 32253013 + 0.666667 NA intron (NM_001322059, intron 1 of 17) MER5C|DNA|hAT-Charlie 46513 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 169-39 chr4 48035059 48035556 + 0.666667 NA intron (NM_207330, intron 5 of 5) MIRc|SINE|MIR 18535 NM_207330 152519 Hs.134190 NM_207330 ENSG00000163293 NIPAL1 NPAL1 NIPA like domain containing 1 protein-coding 236-22 chr4 91503185 91504130 + 0.666667 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 773645 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 164.333-49 chr4 36497264 36497788 + 0.666667 NA intron (NR_149124, intron 4 of 4) intron (NR_149124, intron 4 of 4) -71098 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 160-70 chr8 84931040 84931439 + 0.666667 NA Intergenic L1MD|LINE|L1 -175999 NM_001349637 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 205.333-43 chr4 90528196 90528565 + 0.666667 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 293349 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 182.167-16 chr16 52330665 52331147 + 0.666667 NA Intergenic Intergenic 72342 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 138.667-67 chr4 78368236 78368609 + 0.666667 NA intron (NM_001166133, intron 22 of 41) intron (NM_001166133, intron 22 of 41) 79437 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 134.833-45 chr4 84385951 84386171 + 0.666667 NA Intergenic MIRb|SINE|MIR -86892 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 213.167-5 chr11 17311065 17311556 + 0.666667 NA intron (NM_001352669, intron 9 of 14) intron (NM_001352669, intron 9 of 14) 34340 NM_001352670 4925 Hs.654599 NM_005013 ENSG00000070081 NUCB2 HEL-S-109|NEFA nucleobindin 2 protein-coding 170.5-18 chr14 55060768 55061041 + 0.666667 NA intron (NM_144578, intron 1 of 3) AluJo|SINE|Alu 9257 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 174.667-57 chr6 44723337 44723711 + 0.666667 NA Intergenic MLT1H|LTR|ERVL-MaLR -171643 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 237.833-3 chr17 65732111 65732547 + 0.666667 NA intron (NR_126542, intron 2 of 5) Tigger1|DNA|TcMar-Tigger 94122 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 153.833-34 chr2 203249055 203249446 + 0.666667 NA intron (NM_177538, intron 3 of 12) FLAM_A|SINE|Alu 10809 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 137.667-17 chr11 104577582 104577874 + 0.666667 NA intron (NR_120585, intron 1 of 3) (AATACAG)n|Simple_repeat|Simple_repeat 31574 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 121.667-90 chr7 110291585 110291868 + 0.666667 NA Intergenic Intergenic -331513 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 115.667-42 chr18 76577722 76578139 + 0.666667 NA Intergenic Intergenic -41847 NR_120419 400660 Hs.131718 NR_120419 ENSG00000266256 LINC00683 - long intergenic non-protein coding RNA 683 ncRNA 194.167-14 chr15 59583727 59584233 + 0.666667 NA Intergenic L1PA14|LINE|L1 -27803 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 214.5-32 chr6 11159722 11160110 + 0.666667 NA Intergenic L1MB8|LINE|L1 -48191 NM_207582 405754 Hs.631996 NM_207582 ENSG00000244476 ERVFRD-1 ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD endogenous retrovirus group FRD member 1, envelope protein-coding 141-68 chr4 105487110 105487464 + 0.666667 NA Intergenic L1M4|LINE|L1 -13217 NM_176866 27068 Hs.654957 NM_006903 ENSG00000138777 PPA2 HSPC124|SCFAI|SCFI|SID6-306 pyrophosphatase (inorganic) 2 protein-coding 117.333-115 chr9 28676975 28677378 + 0.666667 NA intron (NM_001354574, intron 2 of 5) MIR|SINE|MIR 42129 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 165-35 chr3 63530463 63530957 + 0.666667 NA intron (NM_001130003, intron 3 of 5) MER5A1|DNA|hAT-Charlie 19341 NR_046677 100874016 Hs.441275 NR_046677 ENSG00000241359 SYNPR-AS1 - SYNPR antisense RNA 1 ncRNA 197.667-6 chr1 112637318 112637660 + 0.666667 NA intron (NM_006135, intron 1 of 9) AluJo|SINE|Alu 17657 NM_006135 829 Hs.744974 NM_006135 ENSG00000116489 CAPZA1 CAPPA1|CAPZ|CAZ1 capping actin protein of muscle Z-line subunit alpha 1 protein-coding 125.333-118 chr8 52311715 52311936 + 0.666667 NA intron (NR_148195, intron 2 of 3) THE1D|LTR|ERVL-MaLR -57333 NM_001352842 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 151.167-6 chr10 76549633 76549967 + 0.666667 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -338244 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 190.667-51 chr7 33571658 33572134 + 0.666667 NA intron (NR_145411, intron 22 of 23) L1MA4|LINE|L1 -333019 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 224-28 chr3 88540289 88540858 + 0.666667 NA Intergenic L1MC1|LINE|L1 202117 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 121.5-28 chr12 59220690 59220897 + 0.666667 NA Intergenic Intergenic -300255 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 166.667-46 chr5 174752822 174753083 + 0.666667 NA Intergenic Intergenic 1218 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 164.667-67 chr6 133784542 133784996 + 0.666667 NA intron (NR_109982, intron 2 of 8) L1MEd|LINE|L1 -36378 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 113.667-120 chr7 102873851 102874060 + 0.666667 NA intron (NR_105043, intron 17 of 20) L2a|LINE|L2 -39045 NM_001031692 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 246.833-6 chr18 68147738 68148510 + 0.666667 NA Intergenic Intergenic -333302 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 123-43 chr2 68254147 68254467 + 0.666667 NA Intergenic Intergenic -1775 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 117-25 chr13 92524542 92524779 + 0.666667 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 34497 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 115-3 chr1 188248940 188249167 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 805425 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 114-50 chr18 8713056 8713243 + 0.666667 NA Intergenic Intergenic -4232 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 207-33 chr3 64698515 64698973 + 0.666667 NA intron (NR_038264, intron 1 of 5) L1ME4b|LINE|L1 -10744 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 185.5-8 chr10 97351971 97352368 + 0.666667 NA Intergenic Intergenic -17440 NM_012083 23401 Hs.140720 NM_012083 ENSG00000181274 FRAT2 FRAT-2 FRAT regulator of WNT signaling pathway 2 protein-coding 190.667-33 chr3 97843781 97844345 + 0.666667 NA intron (NM_153605, intron 2 of 21) intron (NM_153605, intron 2 of 21) 22052 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 135.167-92 chr8 135611162 135611407 + 0.666667 NA intron (NM_006558, intron 7 of 8) MIRb|SINE|MIR 153828 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 185.667-55 chr7 89061914 89062229 + 0.666667 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -266334 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 165.167-31 chr3 41301869 41302173 + 0.666667 NA intron (NR_136342, intron 33 of 34) intron (NR_136342, intron 33 of 34) 102516 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 182.5-44 chr8 125166852 125167263 + 0.666667 NA intron (NR_146191, intron 5 of 8) intron (NR_146191, intron 5 of 8) 75197 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 132-47 chr2 236911763 236912037 + 0.666667 NA Intergenic Intergenic 144267 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 144-32 chr2 14427784 14428102 + 0.666667 NA Intergenic MIR|SINE|MIR -26985 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 120.167-83 chr8 137633402 137633752 + 0.666667 NA Intergenic Intergenic -219989 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 155.667-57 chr4 122930615 122930907 + 0.666667 NA intron (NM_001317799, intron 3 of 10) intron (NM_001317799, intron 3 of 10) 7683 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 146-27 chr16 50743137 50743502 + 0.666667 NA TTS (NR_130462) TTS (NR_130462) 1014 NR_130462 100422972 NR_130462 ENSG00000264947 MIR3181 - microRNA 3181 ncRNA 161.667-89 chr8 93472008 93472375 + 0.666667 NA intron (NR_033858, intron 7 of 10) intron (NR_033858, intron 7 of 10) 228242 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 124.667-61 chr2 78768401 78768712 + 0.666667 NA Intergenic AluSz|SINE|Alu 223025 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 124.5-15 chr12 2242425 2242620 + 0.666667 NA intron (NM_199460, intron 3 of 49).2 MER102a|DNA|hAT-Charlie -19041 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 129.833-37 chr20 19183819 19184087 + 0.666667 NA Intergenic L1MB7|LINE|L1 -28689 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 141.334-6 chr7 70318284 70318861 + 0.666667 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 720097 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 206.667-29 chr3 8819274 8819793 + 0.666667 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -49919 NM_001354653 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 145.167-46 chr3 46729726 46729981 + 0.666667 NA intron (NR_147121, intron 3 of 3) L1ME4b|LINE|L1 6574 NR_147121 100287362 Hs.673244 NM_001205271 ENSG00000261603 PRSS46P PRSS46|TESSP6 serine protease 46, pseudogene pseudo 150.333-92 chr7 25370974 25371271 + 0.666667 NA Intergenic L3|LINE|CR1 -142636 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 170.167-59 chrX 128250204 128250657 + 0.666667 NA Intergenic L1MD2|LINE|L1 -198027 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 246-10 chr18 73508485 73508920 + 0.666667 NA Intergenic MLT2B2|LTR|ERVL 183761 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 192-23 chr2 167105027 167105472 + 0.666667 NA intron (NM_152381, intron 2 of 10) L1MD1|LINE|L1 35706 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 120.5-26 chr12 43071174 43071459 + 0.666667 NA Intergenic Intergenic -83999 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 144.167-56 chr4 119823584 119823933 + 0.666667 NA Intergenic Tigger3|DNA|TcMar-Tigger -19243 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 129.167-86 chr8 129846263 129846737 + 0.666667 NA intron (NM_001353307, intron 13 of 13) HAL1b|LINE|L1 -59876 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 121.333-8 chr1 192373482 192373691 + 0.666667 NA Intergenic AluSx1|SINE|Alu 56594 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 171.167-3 chr1 113300690 113300998 + 0.666667 NA Intergenic Intergenic -89671 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 291.5-11 chr2 58090938 58091813 + 0.666667 NA intron (NM_001130483, intron 7 of 13) L1MC1|LINE|L1 44663 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 131-27 chr19 31855248 31855595 + 0.666667 NA Intergenic L1MC1|LINE|L1 -170441 NR_110674 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 133.333-36 chr14 69004503 69004828 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR 24983 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 171.333-9 chr1 211100417 211100874 + 0.666667 NA intron (NM_002238, intron 3 of 10) AluSx1|SINE|Alu 32729 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 113.333-87 chr5 26983311 26983649 + 0.666667 NA intron (NM_016279, intron 2 of 11) intron (NM_016279, intron 2 of 11) 55106 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 133.5-73 chr7 29862158 29862397 + 0.666667 NA intron (NM_001080529, intron 2 of 8) intron (NM_001080529, intron 2 of 8) 55723 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 198.167-10 chr16 31176485 31177057 + 0.666667 NA Intergenic AluSz|SINE|Alu -3339 NM_001170634 2521 Hs.46894 NM_004960 ENSG00000089280 FUS ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS FUS RNA binding protein protein-coding 151.667-21 chr13 79529015 79529358 + 0.666667 NA intron (NM_019080, intron 2 of 7) MIRc|SINE|MIR -37541 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 176.333-24 chr14 64158368 64158698 + 0.666667 NA intron (NM_015180, intron 85 of 114) intron (NM_015180, intron 85 of 114) -55611 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 209.5-38 chr7 55853630 55854069 + 0.666667 NA intron (NM_207366, intron 2 of 9) AluJo|SINE|Alu 8903 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 122.667-26 chr14 64511500 64511835 + 0.666667 NA intron (NM_001123329, intron 1 of 1) intron (NM_001123329, intron 1 of 1) -6454 NM_001304507 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 127.5-69 chr8 117147349 117147744 + 0.666667 NA intron (NM_173851, intron 2 of 7) L1ME4a|LINE|L1 12551 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 199-13 chr2 58124597 58125055 + 0.666667 NA intron (NM_001130483, intron 8 of 13) intron (NM_001130483, intron 8 of 13) 78114 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 117-69 chr3 47609510 47609786 + 0.666667 NA intron (NM_003074, intron 26 of 27) L1MC5|LINE|L1 -29408 NM_001206945 10675 Hs.45127 NM_006574 ENSG00000114646 CSPG5 NGC chondroitin sulfate proteoglycan 5 protein-coding 143.833-60 chrX 153523163 153523568 + 0.666667 NA Intergenic L1ME4c|LINE|L1 -12757 NM_021949 492 Hs.533956 NM_021949 ENSG00000067842 ATP2B3 CFAP39|CLA2|OPCA|PMCA3|PMCA3a|SCAX1 ATPase plasma membrane Ca2+ transporting 3 protein-coding 158-18 chr14 62443044 62443367 + 0.666667 NA Intergenic LTR8|LTR|ERV1 -303232 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 187.667-52 chr7 136704571 136705054 + 0.666667 NA Intergenic Intergenic -163840 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 209.167-18 chr2 57483490 57484108 + 0.666667 NA Intergenic L1P4|LINE|L1 -423852 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 135.167-17 chr11 92755863 92756213 + 0.666667 NA intron (NM_001008781, intron 3 of 24) L2a|LINE|L2 159590 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 161.834-2 chr2 207998677 207999248 + 0.666667 NA intron (NM_001080475, intron 2 of 7) intron (NM_001080475, intron 2 of 7) 26565 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 199.333-5 chr10 71454739 71455150 + 0.666667 NA intron (NM_052836, intron 3 of 12) AluJr|SINE|Alu 56976 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 123-46 chr2 136893858 136894137 + 0.666667 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 128452 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 184.833-16 chr20 46736694 46737099 + 0.666667 NA TTS (NM_030777) TTS (NM_030777) 27247 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 143-40 chr20 7693845 7694121 + 0.666667 NA Intergenic Intergenic 246475 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 214.667-39 chr8 83885219 83885625 + 0.666667 NA Intergenic L1M5|LINE|L1 -297365 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 167.167 chr1 10268774 10269056 + 0.666667 NA intron (NM_001365953, intron 7 of 20) MIR|SINE|MIR -30051 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 201.5-31 chr5 164268821 164269171 + 0.666667 NA Intergenic Intergenic 198406 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 203.333-44 chr6 38049065 38049635 + 0.666667 NA intron (NM_021943, intron 2 of 5) MIR|SINE|MIR 229623 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 155-16 chr11 84300483 84300948 + 0.666667 NA intron (NM_001142699, intron 7 of 27) L1M5|LINE|L1 16624 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 167.167-48 chr5 121473646 121474105 + 0.666667 NA Intergenic Intergenic 151325 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 169.333-78 chr9 131401652 131401935 + 0.666667 NA Intergenic AluSq2|SINE|Alu -28297 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline rich coiled-coil 2B protein-coding 204.5 chr1 14744512 14744868 + 0.666667 NA intron (NM_201628, intron 1 of 14) AluJr|SINE|Alu 145973 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 163-47 chr5 28539415 28539693 + 0.666667 NA Intergenic Intergenic -251889 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 130.333-96 chr8 131599359 131599594 + 0.666667 NA Intergenic Intergenic -304617 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 134.833-61 chr7 131092595 131092962 + 0.666667 NA intron (NR_109850, intron 2 of 5) intron (NR_109850, intron 2 of 5) 14252 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 141.5-70 chr5 31000834 31001061 + 0.666667 NA Intergenic Intergenic -192739 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 196-56 chr5 107060616 107061131 + 0.666667 NA Intergenic Intergenic -49859 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 155.833-14 chr12 9668500 9668967 + 0.666667 NA promoter-TSS (NR_036693) promoter-TSS (NR_036693) -980 NM_001004419 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 146.167-37 chr2 225078820 225079276 + 0.666667 NA Intergenic Intergenic -36580 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 141.333-104 chrX 46903308 46903567 + 0.666667 NA Intergenic L1MD2|LINE|L1 -3733 NR_046101 724087 Hs.679235 NR_046101 ENSG00000204904 LINC01545 CXorf31 long intergenic non-protein coding RNA 1545 ncRNA 154.333-55 chr4 64827405 64827802 + 0.666667 NA Intergenic Intergenic 176897 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 113.667-76 chr22 35367093 35367433 + 0.666667 NA Intergenic MER84|LTR|ERV1 -13833 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 131.333-31 chr15 36320104 36320366 + 0.666667 NA Intergenic L1MEf|LINE|L1 -259391 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 221.333-32 chr8 103262709 103263237 + 0.666667 NA intron (NR_148216, intron 1 of 1) L1M4|LINE|L1 -35521 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 119-94 chr8 54352956 54353366 + 0.666667 NA Intergenic Arthur1|DNA|hAT-Tip100 22475 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 130.833-12 chr12 19365892 19366116 + 0.666667 NA exon (NM_001143821, exon 26 of 28) exon (NM_001143821, exon 26 of 28) -73488 NM_153207 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 130.833-2 chr1 73723023 73723449 + 0.666667 NA intron (NR_146300, intron 3 of 3) ERVL-int|LTR|ERVL 48557 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 148.333-68 chr3 127794203 127794555 + 0.666667 NA intron (NM_001003794, intron 2 of 7) intron (NM_001003794, intron 2 of 7) 28503 NM_001256585 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 119.833-85 chr8 103774640 103774962 + 0.666667 NA intron (NM_001348497, intron 3 of 22) L1ME2z|LINE|L1 -44419 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 121.167-40 chr2 65904090 65904474 + 0.666667 NA Intergenic AluJo|SINE|Alu 454046 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 114.5-67 chr3 115725500 115725813 + 0.666667 NA Intergenic Intergenic 102146 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 200-62 chr7 27289321 27289898 + 0.666667 NA Intergenic Intergenic -42380 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 190-11 chr11 82237509 82237920 + 0.666667 NA intron (NR_120571, intron 3 of 7) MER34A1|LTR|ERV1 166199 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 130.667-72 chr5 41407446 41407989 + 0.666667 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 102884 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 307.834-3 chrUn_KI270544v1 13 1119 + 0.666667 NA NA ALR/Alpha|Satellite|centr NA NA 158-51 chr7 77962413 77962673 + 0.666667 NA Intergenic Intergenic 122413 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 133-38 chr18 8796220 8796489 + 0.666667 NA exon (NM_015210, exon 9 of 17) exon (NM_015210, exon 9 of 17) 78973 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 189.5-42 chr4 41994189 41994721 + 0.666667 NA intron (NM_006345, intron 1 of 17) intron (NM_006345, intron 1 of 17) 3925 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 228.5-33 chr7 52244098 52244735 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR -791217 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 220.333-24 chr4 86677649 86678299 + 0.666667 NA intron (NM_080685, intron 3 of 47) intron (NM_080685, intron 3 of 47) 83659 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 154.333-45 chr21 33215393 33215647 + 0.666667 NA Intergenic Intergenic -14375 NM_001289125 3455 Hs.708195 NM_000874 ENSG00000159110 IFNAR2 IFN-R|IFN-alpha-REC|IFNABR|IFNARB|IMD45 interferon alpha and beta receptor subunit 2 protein-coding 139-64 chr6 150815530 150815989 + 0.666667 NA intron (NM_001329803, intron 8 of 13) intron (NM_001329803, intron 8 of 13) -49920 NR_146719 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 203.167-22 chr2 5620456 5621053 + 0.666667 NA Intergenic Intergenic 70364 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 158.333-48 chr20 52441494 52441773 + 0.666667 NA Intergenic Intergenic -179205 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 177-6 chr10 16241073 16241505 + 0.666667 NA Intergenic L1MEc|LINE|L1 -195654 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 207.167-20 chr22 25370173 25370672 + 0.666667 NA intron (NM_001135772, intron 2 of 5) intron (NM_001135772, intron 2 of 5) -7865 NM_182492 91355 Hs.634058 NM_182492 ENSG00000100068 LRP5L - LDL receptor related protein 5 like protein-coding 217.5-11 chr14 72803323 72804005 + 0.666667 NA intron (NM_001280542, intron 1 of 10) L2a|LINE|L2 88985 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 166-67 chr7 146591233 146591736 + 0.666667 NA Intergenic Intergenic -182787 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 136.834-2 chr10 37590569 37591173 + 0.666667 NA Intergenic AluSx|SINE|Alu 12060 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 119.833-8 chr1 113979173 113979510 + 0.666667 NA promoter-TSS (NM_001286353) promoter-TSS (NM_001286353) -50 NM_001286353 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 166-21 chr13 37415796 37416270 + 0.666667 NA Intergenic Intergenic 68751 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 167-2 chr1 67221710 67222070 + 0.666667 NA intron (NM_144701, intron 7 of 10) FLAM_C|SINE|Alu 55436 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 172.333-33 chr19 28868137 28868480 + 0.666667 NA Intergenic L1PA16|LINE|L1 -96823 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 150.667-51 chr2 137441571 137441946 + 0.666667 NA intron (NM_001316349, intron 14 of 27) intron (NM_001316349, intron 14 of 27) 486174 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 172.833-32 chr3 109375617 109376179 + 0.666667 NA Intergenic Intergenic -34092 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 246.667-25 chr8 87968414 87969028 + 0.666667 NA Intergenic MER50B|LTR|ERV1 -94706 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 168.333-32 chr2 209348312 209348815 + 0.666667 NA Intergenic Intergenic -75484 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 167.667-81 chr6 149346178 149346655 + 0.666667 NA intron (NM_001369506, intron 2 of 7) intron (NM_001369506, intron 2 of 7) 28116 NM_015093 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 210.833-10 chr16 63476341 63476661 + 0.666667 NA Intergenic Intergenic -1440063 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 148.333-19 chr11 91511941 91512307 + 0.666667 NA Intergenic Intergenic -642922 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 136.167-3 chr1 73055734 73055996 + 0.666667 NA Intergenic Intergenic -250305 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 198.333-5 chr11 40398697 40399073 + 0.666667 NA intron (NM_020929, intron 2 of 4) L1M5|LINE|L1 -105755 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 132.667-96 chr8 107437002 107437497 + 0.666667 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 60669 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 175.833-19 chr2 10315710 10315973 + 0.666667 NA intron (NM_134421, intron 1 of 5) AluSz|SINE|Alu 12141 NM_134421 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 113.833-89 chr8 118759828 118760201 + 0.666667 NA Intergenic Intergenic -138051 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 124.667-81 chr3 135771093 135771507 + 0.666667 NA Intergenic Intergenic -194428 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 114.167-97 chr8 122485037 122485315 + 0.666667 NA intron (NR_131202, intron 2 of 3) MLT1A0|LTR|ERVL-MaLR 83468 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 257-13 chr5 149878740 149879232 + 0.666667 NA intron (NM_000440, intron 17 of 21) L1ME4b|LINE|L1 53991 NR_110534 644762 Hs.730366 NR_110534 LOC644762 - mitochondrial fission factor pseudogene pseudo 285.167-11 chr8 64780068 64780653 + 0.666667 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 18377 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 131.667-37 chr14 82368023 82368247 + 0.666667 NA Intergenic L1MB8|LINE|L1 -274497 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 195.5-36 chr6 153895129 153895834 + 0.666667 NA Intergenic Zaphod|DNA|hAT-Tip100 -115015 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 144.167-52 chr4 32524623 32524878 + 0.666667 NA Intergenic AluSq2|SINE|Alu 173712 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 143-74 chr7 30309617 30310042 + 0.666667 NA intron (NM_147128, intron 1 of 4) intron (NM_147128, intron 1 of 4) -19939 NR_037513 100500883 NR_037513 ENSG00000283237 MIR550B1 - microRNA 550b-1 ncRNA 199-5 chr10 121912788 121913086 + 0.666667 NA intron (NM_001288734, intron 3 of 10) AluSc8|SINE|Alu 15094 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 125.167-36 chr2 80927964 80928261 + 0.666667 NA Intergenic Intergenic 538834 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 203.333-4 chr1 184032310 184032701 + 0.666667 NA intron (NM_001303421, intron 1 of 11) MIRb|SINE|MIR 5223 NM_001303420 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|ColGalT 2|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 115.833-84 chr9 101485749 101486239 + 0.666667 NA intron (NM_001303107, intron 1 of 2) CpG 474 NM_001371233 165.834-8 chr9 30892458 30893086 + 0.666667 NA Intergenic Intergenic -484318 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 161.667-51 chr3 44881422 44882026 + 0.666667 NA intron (NM_003241, intron 1 of 13) MER68-int|LTR|ERVL 7116 NM_003241 7047 Hs.438265 NM_003241 ENSG00000163810 TGM4 TGP|hTGP transglutaminase 4 protein-coding 230.333-14 chr2 208854810 208855361 + 0.666667 NA Intergenic MER11B|LTR|ERVK 312443 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 189.167-37 chr5 45248168 45248534 + 0.666667 NA Intergenic Intergenic 439404 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 223.333-42 chr8 107614870 107615393 + 0.666667 NA Intergenic Intergenic -117213 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 138.5-91 chrX 94463680 94464064 + 0.666667 NA Intergenic Intergenic 599354 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 224.667-4 chr10 25216645 25217020 + 0.666667 NA intron (NM_020752, intron 1 of 10) intron (NM_020752, intron 1 of 10) -40556 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 201.333-31 chr5 119734841 119735372 + 0.666667 NA Intergenic Intergenic 105547 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 160-41 chr2 20320794 20321095 + 0.666667 NA intron (NM_001282790, intron 1 of 18) intron (NM_001282790, intron 1 of 18) 6442 NM_001282790 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 122.667-80 chr4 161661099 161661681 + 0.666667 NA intron (NM_001128428, intron 6 of 14) intron (NM_001128428, intron 6 of 14) -361343 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 199.833-16 chr18 44483261 44483630 + 0.666667 NA intron (NR_110792, intron 2 of 4) intron (NR_110792, intron 2 of 4) 48252 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 267.333-10 chr14 58363457 58364206 + 0.666667 NA intron (NM_002892, intron 19 of 23) intron (NM_002892, intron 19 of 23) -32099 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 170.833-32 chr4 40591901 40592206 + 0.666667 NA intron (NM_001371114, intron 1 of 5) intron (NM_001371114, intron 1 of 5) 37811 NM_001098634 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 174.5-58 chr9 118693303 118693680 + 0.666667 NA intron (NR_151725, intron 2 of 3) intron (NR_151725, intron 2 of 3) 13820 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 153.5-43 chr22 24717488 24717885 + 0.666667 NA Intergenic Intergenic -46815 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 202.667-18 chr18 40251498 40251906 + 0.666667 NA Intergenic Intergenic 185416 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 175.333-9 chr12 57007639 57008038 + 0.666667 NA Intergenic LTR82B|LTR|ERVL -1292 NM_014830 9880 Hs.591025 NM_014830 ENSG00000166860 ZBTB39 ZNF922 zinc finger and BTB domain containing 39 protein-coding 199.667-14 chr12 21039677 21040048 + 0.666667 NA intron (NM_001009562, intron 5 of 12) L1MA1|LINE|L1 24166 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 152-40 chr5 86946735 86947087 + 0.666667 NA Intergenic MLT1A-int|LTR|ERVL-MaLR 168043 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 140.667-67 chr5 66599402 66599792 + 0.666667 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) 3204 NM_001290228 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 131.333-32 chr15 70699991 70700217 + 0.666667 NA intron (NM_018003, intron 1 of 18) intron (NM_018003, intron 1 of 18) 2178 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 119.833-19 chr10 73536019 73536368 + 0.666667 NA intron (NR_146997, intron 11 of 21) intron (NR_146997, intron 11 of 21) 17147 NR_135250 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 186.333-4 chr1 152749609 152750048 + 0.666667 NA Intergenic Intergenic -8197 NM_001025231 448834 Hs.149386 NM_001025231 ENSG00000203786 KPRP C1orf45 keratinocyte proline rich protein protein-coding 145.333-6 chr1 184605851 184606186 + 0.666667 NA intron (NM_030806, intron 5 of 5) intron (NM_030806, intron 5 of 5) 148840 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 164-11 chr12 48523642 48524065 + 0.666667 NA Intergenic Intergenic -1779 NM_001005203 341568 Hs.524373 NM_001005203 ENSG00000284723 OR8S1 - olfactory receptor family 8 subfamily S member 1 protein-coding 195-21 chr2 150357619 150358119 + 0.666667 NA Intergenic (TGAT)n|Simple_repeat|Simple_repeat -100862 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 141.667-102 chr7 26563015 26563357 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie -24361 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 126.5-80 chr7 82774217 82774452 + 0.666667 NA intron (NM_033026, intron 22 of 24) intron (NM_033026, intron 22 of 24) -330378 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 175.167-4 chr1 115722349 115722650 + 0.666667 NA intron (NM_001232, intron 7 of 10) intron (NM_001232, intron 7 of 10) 46306 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 148.333-99 chr8 41856017 41856298 + 0.666667 NA intron (NM_001142446, intron 1 of 42) Charlie4z|DNA|hAT-Charlie 40584 NM_001142446 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 165.333-26 chr17 9853893 9854312 + 0.666667 NA intron (NM_004246, intron 4 of 12) intron (NM_004246, intron 4 of 12) 28178 NM_004246 9340 Hs.248202 NM_004246 ENSG00000065325 GLP2R - glucagon like peptide 2 receptor protein-coding 148.833-28 chr18 62967370 62967690 + 0.666667 NA intron (NM_194449, intron 14 of 16) L1ME1|LINE|L1 251989 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 113.333-88 chr5 55246500 55246748 + 0.666667 NA Intergenic Intergenic -12907 NR_125347 10309 Hs.3041 NM_021147 ENSG00000152669 CCNO CCNU|CILD29|UDG2 cyclin O protein-coding 176-34 chr5 38040689 38040981 + 0.666667 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 15138 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 169-56 chr7 50991099 50991402 + 0.666667 NA Intergenic L1ME1|LINE|L1 -197797 NM_001371008 237.5-25 chr6 112500160 112500901 + 0.666667 NA Intergenic Intergenic 153200 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 299.833-5 chr3 59896327 59897114 + 0.666667 NA intron (NR_135491, intron 5 of 6) intron (NR_135491, intron 5 of 6) 184189 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 121-98 chr9 108258784 108259066 + 0.666667 NA Intergenic Intergenic 597061 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 188.667-57 chr6 151918735 151919063 + 0.666667 NA intron (NM_001122741, intron 4 of 8) intron (NM_001122741, intron 4 of 8) 109792 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 161.333-72 chr7 69522275 69522734 + 0.666667 NA Intergenic L1M4b|LINE|L1 75120 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 130.667-9 chr10 69204643 69204937 + 0.666667 NA intron (NM_001323586, intron 14 of 15) AluSz6|SINE|Alu -15542 NM_025130 80201 Hs.522988 NM_025130 ENSG00000156510 HKDC1 - hexokinase domain containing 1 protein-coding 216.833-6 chr12 10236042 10236744 + 0.666667 NA Intergenic AluSz|SINE|Alu -2568 NM_001351060 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 135.833-72 chr8 130136279 130136508 + 0.666667 NA intron (NM_001362925, intron 15 of 29) intron (NM_001362925, intron 15 of 29) -51625 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 123.333-25 chr11 58370627 58370947 + 0.666667 NA Intergenic Intergenic -11718 NM_001005489 219965 NM_001005489 ENSG00000197786 OR5B17 OR11-237|OR5B20P olfactory receptor family 5 subfamily B member 17 protein-coding 182.333-36 chr2 204551592 204551893 + 0.666667 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 6267 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 125.333-43 chr14 60049626 60049985 + 0.666667 NA intron (NR_075071, intron 29 of 32) L1PA11|LINE|L1 -42106 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 214.667-5 chr10 56753546 56754085 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -392542 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 139.167-65 chr8 9333798 9334045 + 0.666667 NA non-coding (NR_040039, exon 3 of 3) non-coding (NR_040039, exon 3 of 3) 8870 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 187-45 chr8 116862150 116862693 + 0.666667 NA intron (NM_006265, intron 3 of 13) intron (NM_006265, intron 3 of 13) -12003 NR_033886 644660 Hs.706174 NR_033886 ENSG00000253327 RAD21-AS1 C8orf81|NCRNA00255 RAD21 antisense RNA 1 ncRNA 210.667-8 chr11 76991461 76992072 + 0.666667 NA intron (NM_001300953, intron 5 of 9) AluSz|SINE|Alu -42632 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 158.167-32 chr22 27002408 27002790 + 0.666667 NA Intergenic MIRb|SINE|MIR 57919 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 159.667-73 chr5 106265193 106265580 + 0.666667 NA Intergenic L1ME1|LINE|L1 745628 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 148-8 chr1 168930930 168931307 + 0.666667 NA intron (NR_104091, intron 3 of 4) L1MEd|LINE|L1 144177 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 213.833-35 chr7 19530870 19531365 + 0.666667 NA Intergenic Intergenic 174319 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 160.5-46 chr5 41647993 41648515 + 0.666667 NA Intergenic Intergenic -137653 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 144.167-7 chr1 178087088 178087547 + 0.666667 NA Intergenic Intergenic 6676 NR_027982 100302401 Hs.736117 NR_027982 ENSG00000224687 RASAL2-AS1 - RASAL2 antisense RNA 1 ncRNA 166-55 chr6 147267017 147267534 + 0.666667 NA intron (NM_139244, intron 7 of 25) intron (NM_139244, intron 7 of 25) -62661 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 146-72 chr8 104617829 104618124 + 0.666667 NA Intergenic L2c|LINE|L2 -28952 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 187.334-8 chr7 81615255 81615983 + 0.666667 NA intron (NR_126026, intron 2 of 8) L2c|LINE|L2 10597 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 160-51 chr3 21742937 21743241 + 0.666667 NA intron (NM_024697, intron 1 of 7) MIRb|SINE|MIR 8121 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 130.5-17 chr13 34193181 34193497 + 0.666667 NA Intergenic Intergenic -154704 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 145.5-16 chr12 120898962 120899419 + 0.666667 NA intron (NM_139015, intron 1 of 10) intron (NM_139015, intron 1 of 10) 5168 NM_139015 121665 Hs.507087 NM_139015 ENSG00000157837 SPPL3 IMP2|MDHV1887|PRO4332|PSH1|PSL4 signal peptide peptidase like 3 protein-coding 204.167-35 chr9 37209970 37210379 + 0.666667 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 89576 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 211.833-3 chr1 117494927 117495327 + 0.666667 NA intron (NM_006699, intron 9 of 12) intron (NM_006699, intron 9 of 12) 110643 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 223.667-10 chr17 60738793 60739217 + 0.666667 NA intron (NM_001330413, intron 5 of 25) L1MCa|LINE|L1 61154 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 234.333-16 chr2 13309075 13309673 + 0.666667 NA Intergenic L1PA10|LINE|L1 -302361 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 218.833-10 chr14 52372340 52372692 + 0.666667 NA Intergenic L1PB1|LINE|L1 58204 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 118.333-57 chr2 172830989 172831198 + 0.666667 NA intron (NM_001100397, intron 1 of 27) intron (NM_001100397, intron 1 of 27) 9506 NM_001100397 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 136.667-95 chr7 91467830 91468084 + 0.666667 NA Intergenic Intergenic 203524 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 141.833-26 chr4 33123673 33124031 + 0.666667 NA Intergenic Intergenic 772814 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 221.667-19 chr20 39100410 39100795 + 0.666667 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 124146 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 139.333-81 chr5 137894549 137894839 + 0.666667 NA intron (NM_001300921, intron 4 of 14) intron (NM_001300921, intron 4 of 14) 5237 NM_014386 27039 Hs.716884 NM_014386 ENSG00000078795 PKD2L2 TRPP5 polycystin 2 like 2, transient receptor potential cation channel protein-coding 145-88 chr8 34510547 34510852 + 0.666667 NA Intergenic L3|LINE|CR1 -273222 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 171.833-12 chr12 18795334 18795680 + 0.666667 NA Intergenic Intergenic 57388 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 177.5-64 chr5 89378378 89378685 + 0.666667 NA intron (NR_136221, intron 5 of 6) intron (NR_136221, intron 5 of 6) -474426 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 134.333-11 chr10 26068769 26069112 + 0.666667 NA intron (NM_017433, intron 12 of 34) intron (NM_017433, intron 12 of 34) 134711 NM_001368265 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 163.333-62 chr5 31255150 31255618 + 0.666667 NA intron (NM_001362435, intron 1 of 10) intron (NM_001362435, intron 1 of 10) 61698 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 134.667-58 chr21 28963708 28963971 + 0.666667 NA intron (NM_001320766, intron 10 of 28) Tigger1|DNA|TcMar-Tigger 29038 NM_015565 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 294.333 chr1 45379403 45379879 + 0.666667 NA intron (NM_007170, intron 4 of 10) intron (NM_007170, intron 4 of 10) -39171 NM_001293192 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 239-17 chr7 76382415 76382904 + 0.666667 NA Intergenic MER2|DNA|TcMar-Tigger -14863 NM_007155 7784 Hs.656137 NM_007155 ENSG00000188372 ZP3 OOMD3|ZP3A|ZP3B|ZPC|Zp-3 zona pellucida glycoprotein 3 protein-coding 135.167-41 chr18 1067966 1068202 + 0.666667 NA Intergenic L1MEc|LINE|L1 -140091 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 238.667-12 chr17 27299747 27300199 + 0.666667 NA intron (NM_134265, intron 1 of 6) intron (NM_134265, intron 1 of 6) 5859 NM_001348350 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 230.167 chr1 71031397 71031890 + 0.666667 NA intron (NM_198719, intron 1 of 3) intron (NM_198719, intron 1 of 3) -14863 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 168.667-85 chr8 121012935 121013273 + 0.666667 NA Intergenic Intergenic -201058 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 148-70 chr5 144444592 144444947 + 0.666667 NA intron (NM_001370487, intron 2 of 2) HAL1M8|LINE|L1 239378 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 114.667-93 chr4 80152327 80152633 + 0.666667 NA Intergenic Intergenic -32790 NM_020226 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 193.667-7 chr12 8685516 8685936 + 0.666667 NA intron (NR_123740, intron 1 of 8) AluSz|SINE|Alu 4049 NM_001352267 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 144.5-30 chr15 34346239 34346580 + 0.666667 NA intron (NM_175741, intron 2 of 7) intron (NM_175741, intron 2 of 7) 3094 NM_001284293 256646 Hs.525769 NM_175741 ENSG00000184507 NUTM1 C15orf55|FAM22H|NUT NUT midline carcinoma family member 1 protein-coding 171.667-34 chr17 32654197 32654535 + 0.666667 NA intron (NM_015194, intron 18 of 21) intron (NM_015194, intron 18 of 21) 167373 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 156.667-7 chr1 119963494 119963786 + 0.666667 NA exon (NM_024408, exon 11 of 34) exon (NM_024408, exon 11 of 34) -67125 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 144.167-4 chr1 107975479 107975835 + 0.666667 NA intron (NR_046653, intron 1 of 2) intron (NR_046653, intron 1 of 2) -10477 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 250.333-7 chr11 99820465 99821110 + 0.666667 NA intron (NM_001243270, intron 3 of 23) MIRb|SINE|MIR 264642 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 180-30 chr3 4557456 4557911 + 0.666667 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 64335 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 114.333-32 chr12 122927272 122927681 + 0.666667 NA intron (NM_203444, intron 11 of 11) L1MD3|LINE|L1 -31352 NM_024667 79720 Hs.507162 NM_024667 ENSG00000139722 VPS37B - VPS37B subunit of ESCRT-I protein-coding 127.167-11 chr1 245813900 245814254 + 0.666667 NA intron (NM_022743, intron 10 of 11) intron (NM_022743, intron 10 of 11) -579560 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 148.5-17 chr13 37917579 37917950 + 0.666667 NA Intergenic Intergenic -47339 NM_001135957 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 125.667-27 chr13 82779016 82779234 + 0.666667 NA Intergenic Intergenic 1103268 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 113.667-63 chr2 68538018 68538425 + 0.666667 NA exon (NM_173545, exon 7 of 10) exon (NM_173545, exon 7 of 10) 70636 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 117.333-79 chr4 46008406 46008630 + 0.666667 NA Intergenic Intergenic 115536 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 128.5-6 chr1 178241219 178241455 + 0.666667 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) -100114 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 225.833-3 chr1 238516862 238517398 + 0.666667 NA Intergenic Intergenic -31113 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 139.333-37 chr15 32972916 32973338 + 0.666667 NA intron (NM_001277313, intron 7 of 20) intron (NM_001277313, intron 7 of 20) 95047 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 141.334-3 chr10 69075353 69075873 + 0.666667 NA Intergenic Intergenic -11990 NM_001321053 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 135.333-70 chr6 105404921 105405225 + 0.666667 NA Intergenic MIRb|SINE|MIR -1991 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 155-27 chr17 16539255 16539816 + 0.666667 NA Intergenic Intergenic 29669 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 120-72 chr3 87310015 87310330 + 0.666667 NA Intergenic LTR43|LTR|ERV1 -33588 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 205.333-12 chr14 64357367 64357924 + 0.666667 NA Intergenic AluSq2|SINE|Alu -10034 NR_033777 441687 Hs.685242 NR_033777 TEX21P - testis expressed 21, pseudogene pseudo 158.333-27 chr14 49447149 49447408 + 0.666667 NA Intergenic Intergenic 139102 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 194.667-10 chr10 110465394 110465819 + 0.666667 NA Intergenic AluSx3|SINE|Alu -32301 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 174.333-62 chr8 35669551 35669889 + 0.666667 NA intron (NM_001322818, intron 4 of 16) L2|LINE|L2 40600 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 206.5-41 chrX 64325737 64326358 + 0.666667 NA intron (NM_017677, intron 12 of 13) Tigger2a|DNA|TcMar-Tigger 69405 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 136.167-19 chr13 93699576 93699826 + 0.666667 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 158772 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 115.667-120 chr8 135418065 135418396 + 0.666667 NA Intergenic Intergenic -39226 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 113.333-79 chr4 34170125 34170424 + 0.666667 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 99473 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 118.834-2 chr1 159926227 159926768 + 0.666667 NA promoter-TSS (NM_003564) promoter-TSS (NM_003564) -990 NM_003564 8407 Hs.517168 NM_003564 ENSG00000158710 TAGLN2 HA1756 transgelin 2 protein-coding 113.5-89 chr8 112223621 112223822 + 0.666667 NA 3' UTR (NM_198124, exon 72 of 72) 3' UTR (NM_198124, exon 72 of 72) -419772 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 188-36 chr3 38694451 38694802 + 0.666667 NA Intergenic Intergenic -44939 NM_001354701 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 135-3 chr1 57307325 57307575 + 0.666667 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) 115662 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 118.333-49 chr2 39653929 39654170 + 0.666667 NA Intergenic L2|LINE|L2 -11449 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 202.333-34 chr4 108781744 108782117 + 0.666667 NA Intergenic Intergenic -18877 NM_001331033 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 263.333-5 chr12 39458408 39458859 + 0.666667 NA Intergenic MER50|LTR|ERV1 -15513 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 163-34 chr2 172440836 172441244 + 0.666667 NA intron (NM_001365530, intron 1 of 25) intron (NM_001365530, intron 1 of 25) 13454 NM_001079818 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 234.167-19 chr8 105867354 105867906 + 0.666667 NA intron (NR_125796, intron 2 of 7) L1MCc|LINE|L1 192873 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 197.667-55 chr7 55365036 55365414 + 0.666667 NA promoter-TSS (NM_018697) promoter-TSS (NM_018697) -223 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 147.333-17 chr12 48259069 48259422 + 0.666667 NA Intergenic Charlie4a|DNA|hAT-Charlie -55953 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 142.167-29 chr17 58861133 58861446 + 0.666667 NA intron (NM_014906, intron 1 of 6) ERV24_Prim-int|LTR|ERV1 105420 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 119.5-34 chr15 64272814 64273059 + 0.666667 NA intron (NM_001329607, intron 2 of 11) AluJb|SINE|Alu 83237 NM_001329606 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 139.833-26 chr15 54097492 54097934 + 0.666667 NA intron (NM_001329919, intron 2 of 31) intron (NM_001329919, intron 2 of 31) 85065 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 160.833-7 chr10 52428089 52428624 + 0.666667 NA Intergenic MER5A1|DNA|hAT-Charlie 26916 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 119-54 chr2 114112744 114112974 + 0.666667 NA Intergenic Intergenic -132875 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 120-77 chr3 169586184 169586626 + 0.666667 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) 77307 NM_001366466 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 205.334-11 chr9 23578373 23578971 + 0.666667 NA intron (NR_121602, intron 11 of 27) (CATA)n|Simple_repeat|Simple_repeat 93727 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 165.334-7 chr9 15744433 15745103 + 0.666667 NA exon (NM_173550, exon 17 of 26) exon (NM_173550, exon 17 of 26) 180790 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 138-83 chr5 31655869 31656110 + 0.666667 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 16858 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 161.667-32 chr15 98272602 98273216 + 0.666667 NA Intergenic Intergenic 58649 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 132.167-23 chr15 94369054 94369465 + 0.666667 NA intron (NM_018349, intron 10 of 21) intron (NM_018349, intron 10 of 21) 13329 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 201-37 chr5 108624056 108624622 + 0.666667 NA Intergenic MER21A|LTR|ERVL 103922 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 169.5-19 chr14 47453232 47453545 + 0.666667 NA intron (NM_001113498, intron 1 of 16) MLT1G1|LTR|ERVL-MaLR -110142 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 208.5-17 chr16 22753315 22753946 + 0.666667 NA Intergenic Intergenic -60532 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 151.833-2 chr1 195772535 195772927 + 0.666667 NA Intergenic Intergenic 315984 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 175.167-32 chr21 29642218 29642655 + 0.666667 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 46396 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 128-17 chr10 107058909 107059169 + 0.666667 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 105667 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 141.333-15 chr10 120877928 120878186 + 0.666667 NA intron (NM_018117, intron 11 of 28) intron (NM_018117, intron 11 of 28) 26695 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 131-19 chr13 96683147 96683383 + 0.666667 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 256036 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 295.5-3 chr10 99225143 99225846 + 0.666667 NA intron (NM_021828, intron 2 of 11) intron (NM_021828, intron 2 of 11) 10381 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 233.333-21 chr18 38432896 38433647 + 0.666667 NA Intergenic Intergenic 776136 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 145.5-44 chr22 45740553 45740853 + 0.666667 NA intron (NM_013236, intron 9 of 11) (AC)n|Simple_repeat|Simple_repeat -19821 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 217.667-13 chr16 8807987 8808367 + 0.666667 NA intron (NM_000303, intron 4 of 7) intron (NM_000303, intron 4 of 7) 10338 NM_000303 5373 Hs.625732 NM_000303 ENSG00000140650 PMM2 CDG1|CDG1a|CDGS|PMI|PMI1|PMM 2 phosphomannomutase 2 protein-coding 213.833-13 chr16 12713505 12713989 + 0.666667 NA intron (NM_018340, intron 2 of 3) MER106B|DNA|hAT-Charlie -6574 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 271-12 chr5 130800176 130800756 + 0.666667 NA Intergenic L1MA9|LINE|L1 364790 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 193-9 chr11 37934889 37935348 + 0.666667 NA Intergenic MER5B|DNA|hAT-Charlie -3483 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 134-80 chr4 54723915 54724124 + 0.666667 NA intron (NM_000222, intron 8 of 20) intron (NM_000222, intron 8 of 20) 66091 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 212.667-2 chr1 90565160 90565532 + 0.666667 NA Intergenic Intergenic -92404 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 123-61 chr22 42006675 42007024 + 0.666667 NA intron (NM_152613, intron 1 of 5) intron (NM_152613, intron 1 of 5) 8061 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 147.5-49 chr2 171877241 171877544 + 0.666667 NA intron (NR_047549, intron 2 of 16) AluSg|SINE|Alu 16852 NM_003705 8604 Hs.470608 NM_003705 ENSG00000115840 SLC25A12 AGC1|ARALAR|EIEE39 solute carrier family 25 member 12 protein-coding 166.333-50 chr3 162662949 162663314 + 0.666667 NA Intergenic LTR68|LTR|ERV1 640170 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 203.333-54 chrX 64292381 64292755 + 0.666667 NA intron (NM_017677, intron 12 of 13) intron (NM_017677, intron 12 of 13) -61961 NM_130388 142689 Hs.56281 NM_130388 ENSG00000198881 ASB12 - ankyrin repeat and SOCS box containing 12 protein-coding 191.333-18 chr2 99186665 99187339 + 0.666667 NA intron (NR_028356, intron 2 of 6) intron (NR_028356, intron 2 of 6) 5818 NR_028356 51263 Hs.346736 NM_016503 ENSG00000185414 MRPL30 L28MT|L30MT|MRP-L28|MRP-L30|MRPL28|MRPL28M|RPML28 mitochondrial ribosomal protein L30 protein-coding 148-9 chr1 195933925 195934266 + 0.666667 NA Intergenic Intergenic 154620 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 142.333-75 chr4 32636311 32636588 + 0.666667 NA Intergenic Intergenic 285411 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 181-40 chr21 28961693 28962054 + 0.666667 NA intron (NM_001320766, intron 10 of 28) AluSx1|SINE|Alu 31004 NM_015565 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 116.167-51 chr3 189529998 189530375 + 0.666667 NA Intergenic Intergenic -66560 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 235-16 chr19 53690393 53690801 + 0.666667 NA promoter-TSS (NR_030189) promoter-TSS (NR_030189) -284 NR_030189 574467 NR_030189 ENSG00000207594 MIR520A MIRN520A microRNA 520a ncRNA 153.333-10 chr10 75973085 75973375 + 0.666667 NA intron (NR_131178, intron 3 of 7) MIRb|SINE|MIR 190469 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 136.5-47 chr2 52197672 52198196 + 0.666667 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -172714 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 185.667-7 chr10 103431092 103431418 + 0.666667 NA intron (NM_014976, intron 21 of 35) intron (NM_014976, intron 21 of 35) 21115 NR_024552 51063 Hs.241545 NM_015916 ENSG00000138172 CALHM2 FAM26B calcium homeostasis modulator family member 2 protein-coding 146.5-13 chr10 59228408 59228887 + 0.666667 NA intron (NM_001143774, intron 1 of 4) intron (NM_001143774, intron 1 of 4) 51180 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 182.333-75 chr9 23325640 23326086 + 0.666667 NA Intergenic Intergenic 346536 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 167-39 chr3 46624829 46625386 + 0.666667 NA intron (NM_001195442, intron 2 of 2) intron (NM_001195442, intron 2 of 2) 12582 NM_001195442 100132146 Hs.679623 NM_001195442 ENSG00000283473 FAM240A - family with sequence similarity 240 member A protein-coding 150.5-85 chr9 30945592 30946062 + 0.666667 NA Intergenic L1MEc|LINE|L1 435663 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 121.667-85 chr6 147952927 147953158 + 0.666667 NA Intergenic Intergenic -319286 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 158.333-4 chr1 99412660 99413060 + 0.666667 NA Intergenic Intergenic 74944 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 130.333-42 chr19 4830338 4830685 + 0.666667 NA intron (NM_182919, intron 1 of 1) intron (NM_182919, intron 1 of 1) 1231 NM_182919 148022 Hs.29344 NM_014261 ENSG00000127666 TICAM1 IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF toll like receptor adaptor molecule 1 protein-coding 176.333-50 chr5 113823982 113824625 + 0.666667 NA Intergenic Intergenic 310609 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 138-57 chr2 145342313 145342554 + 0.666667 NA Intergenic L1MD2|LINE|L1 674466 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 175-27 chr17 54018887 54019284 + 0.666667 NA Intergenic L1M2|LINE|L1 196158 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 217.5-33 chr3 77916499 77916993 + 0.666667 NA Intergenic AluY|SINE|Alu 132217 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 124.333-107 chrX 140134324 140134577 + 0.666667 NA Intergenic L1MB7|LINE|L1 42783 NM_001271560 389895 Hs.127679 NM_001271560 LOC389895 - chromosome 16 open reading frame 72-like protein-coding 143-71 chr6 76364190 76364546 + 0.666667 NA Intergenic L1MA1|LINE|L1 229255 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 115.833-29 chr19 40558511 40558732 + 0.666667 NA intron (NM_025213, intron 9 of 9) AluSx|SINE|Alu -18252 NM_138392 92799 Hs.26506 NM_138392 ENSG00000160410 SHKBP1 PP203|Sb1 SH3KBP1 binding protein 1 protein-coding 176.667-60 chr4 95186167 95186511 + 0.666667 NA intron (NM_003728, intron 12 of 15) intron (NM_003728, intron 12 of 15) 94848 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 134-20 chr10 93608604 93608882 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -3794 NM_006204 5146 Hs.658121 NM_006204 ENSG00000095464 PDE6C ACHM5|COD4|PDEA2 phosphodiesterase 6C protein-coding 126.667-100 chr8 101145389 101145611 + 0.666667 NA Intergenic L1M6|LINE|L1 60173 NM_016096 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 160-47 chr2 212188539 212188883 + 0.666667 NA intron (NM_001042599, intron 1 of 26) L2b|LINE|L2 237649 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 234.667-21 chr20 47076247 47076757 + 0.666667 NA intron (NM_172110, intron 7 of 13) L1PA15|LINE|L1 -90465 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 117.5-46 chr4 15767563 15767765 + 0.666667 NA Intergenic Intergenic -10664 NM_001775 952 Hs.479214 NM_001775 ENSG00000004468 CD38 ADPRC 1|ADPRC1 CD38 molecule protein-coding 217.667-19 chr18 11324667 11325083 + 0.666667 NA Intergenic Intergenic -129603 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 152.333-73 chr9 91999150 91999483 + 0.666667 NA Intergenic MLT2B3|LTR|ERVL -49088 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 132.667-49 chr2 38311110 38311449 + 0.666667 NA intron (NM_001135673, intron 7 of 12) intron (NM_001135673, intron 7 of 12) 65251 NM_001330459 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 264-10 chr2 136698974 136699473 + 0.666667 NA Intergenic Charlie7|DNA|hAT-Charlie -66322 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 192.667-47 chr7 7905422 7905872 + 0.666667 NA Intergenic L1ME3F|LINE|L1 63105 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 162-10 chr10 44498523 44498896 + 0.666667 NA Intergenic L1MDb|LINE|L1 -113612 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 170.333-55 chr4 114626560 114626889 + 0.666667 NA intron (NM_003360, intron 1 of 4) intron (NM_003360, intron 1 of 4) 4357 NM_003360 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 134.167-17 chr11 97065910 97066198 + 0.666667 NA Intergenic L1MA4A|LINE|L1 557629 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 136.333-76 chr5 105953985 105954525 + 0.666667 NA Intergenic Intergenic 854781 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 134.5-66 chr7 3856536 3856820 + 0.666667 NA intron (NM_152744, intron 5 of 44) AluSq|SINE|Alu -273007 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 125.167-58 chr4 53792590 53792846 + 0.666667 NA Intergenic LTR9B|LTR|ERV1 96817 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 158-59 chr9 33175018 33175465 + 0.666667 NA intron (NR_108108, intron 1 of 3) AluJr4|SINE|Alu 7382 NR_108108 101929639 Hs.545818 NR_108108 ENSG00000233554 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 271.667-16 chr6 41661225 41662125 + 0.666667 NA Intergenic MLT1L|LTR|ERVL-MaLR 23207 NM_001300805 4188 Hs.520119 NM_005586 ENSG00000112559 MDFI I-MF|I-mfa MyoD family inhibitor protein-coding 216.667-51 chr9 86562625 86563096 + 0.666667 NA Intergenic Intergenic -208450 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 142-96 chr9 31716058 31716527 + 0.666667 NA Intergenic L2a|LINE|L2 -334802 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 125.333-35 chr13 44638371 44638765 + 0.666667 NA Intergenic Intergenic -1801 NR_149082 106144541 Hs.578031 NR_149082 LINC00407 - long intergenic non-protein coding RNA 407 ncRNA 131.667-68 chr21 15525916 15526282 + 0.666667 NA Intergenic Intergenic -203835 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 164.667-52 chr4 55049079 55049463 + 0.666667 NA Intergenic L1MCa|LINE|L1 76324 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 204.667-34 chr3 182648848 182649397 + 0.666667 NA Intergenic Intergenic -141998 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 233.167-4 chr10 39193969 39194482 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 497629 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 170-48 chr3 80300892 80301340 + 0.666667 NA Intergenic L1MEf|LINE|L1 -463781 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 201.167-6 chr13 107861166 107861818 + 0.666667 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 6004 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 175.833-31 chr22 50649814 50650154 + 0.666667 NA Intergenic MER4-int|LTR|ERV1 -21832 NM_001085426 410 Hs.88251 NM_000487 ENSG00000100299 ARSA ASA|MLD arylsulfatase A protein-coding 186-22 chr2 20341667 20342020 + 0.666667 NA intron (NM_001352920, intron 1 of 19) intron (NM_001352920, intron 1 of 19) 9001 NM_001352919 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 130.5-67 chr5 116295322 116295783 + 0.666667 NA Intergenic AluJo|SINE|Alu 39809 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 133-42 chr2 22135931 22136247 + 0.666667 NA Intergenic L1M5|LINE|L1 -400390 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 122-14 chr11 113358835 113359116 + 0.666667 NA intron (NM_001318533, intron 16 of 21) L1PA13|LINE|L1 -28804 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 268.167-7 chr22 22329990 22330725 + 0.666667 NA Intergenic Intergenic 32259 NR_027293 96610 Hs.449601 NM_080926 BMS1P20 IGL|IGLV|IGLV1 BMS1 pseudogene 20 pseudo 144.167-82 chr9 89943076 89943408 + 0.666667 NA Intergenic Intergenic -26174 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 182.167-12 chr12 26579401 26579725 + 0.666667 NA intron (NM_002223, intron 33 of 56) L1ME4a|LINE|L1 253631 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 185.333-34 chr2 182317755 182318091 + 0.666667 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) -75860 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 181-13 chr11 98455852 98456169 + 0.666667 NA Intergenic HUERS-P2-int|LTR|ERV1 -564939 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 170-11 chr12 44496317 44496637 + 0.666667 NA Intergenic MIR|SINE|MIR 379184 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 127-39 chr17 61024541 61024873 + 0.666667 NA intron (NM_001320470, intron 16 of 25) intron (NM_001320470, intron 16 of 25) 342997 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 123.333-102 chr7 78414459 78414786 + 0.666667 NA intron (NM_001301128, intron 6 of 20) intron (NM_001301128, intron 6 of 20) 67380 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 156.833-34 chr3 43603149 43603646 + 0.666667 NA intron (NM_001346463, intron 2 of 12) HAL1|LINE|L1 18529 NM_001346466 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 183.667-75 chr8 9926819 9927293 + 0.666667 NA Intergenic MLT1L|LTR|ERVL-MaLR -23584 NR_029668 406907 NR_029668 ENSG00000284321 MIR124-1 MIR124A|MIR124A1|MIRN124-1|MIRN124A1|mir-124-1 microRNA 124-1 ncRNA 188.667-6 chr10 95228194 95228503 + 0.666667 NA intron (NM_207321, intron 10 of 10) MIR|SINE|MIR 34148 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 156.333-31 chr14 89259668 89260088 + 0.666667 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 157355 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 182.333-69 chr8 42230336 42230640 + 0.666667 NA Intergenic Intergenic -22923 NM_000930 5327 Hs.491582 NM_000930 ENSG00000104368 PLAT T-PA|TPA plasminogen activator, tissue type protein-coding 139.834 chr17 62968913 62969421 + 0.666667 NA intron (NM_025185, intron 1 of 25) MIR|SINE|MIR 2932 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 293-7 chr7 83616216 83616692 + 0.666667 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 24977 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 201-46 chr8 141248244 141248656 + 0.666667 NA intron (NM_001286646, intron 1 of 7) AluJb|SINE|Alu -6117 NR_161376 105375787 Hs.567685 NR_161376 LOC105375787 - uncharacterized LOC105375787 ncRNA 119.833-44 chr2 126499578 126499956 + 0.666667 NA Intergenic L1M4|LINE|L1 -156168 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 125.333-84 chr3 180555008 180555414 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -46952 NM_001042601 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 218.5-24 chr4 56772525 56772877 + 0.666667 NA Intergenic Intergenic 48772 NR_073419 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 172.5-35 chr3 54476590 54476917 + 0.666667 NA intron (NM_018398, intron 4 of 37) L1MA9|LINE|L1 163104 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 173.167-54 chrX 70166387 70167101 + 0.666667 NA TTS (NM_001551) TTS (NM_001551) -10739 NM_198512 347516 Hs.454355 NM_198512 ENSG00000184210 DGAT2L6 DC3 diacylglycerol O-acyltransferase 2 like 6 protein-coding 255-2 chr1 204592073 204592501 + 0.666667 NA Intergenic Intergenic 75881 NM_002393 4194 Hs.497492 NM_002393 ENSG00000198625 MDM4 HDMX|MDMX|MRP1 MDM4 regulator of p53 protein-coding 118.167-65 chr8 119019710 119019992 + 0.666667 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) -47396 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 149.167-38 chr22 37839109 37839571 + 0.666667 NA intron (NM_001349853, intron 2 of 7) intron (NM_001349853, intron 2 of 7) 4508 NM_001363839 129138 Hs.135259 NM_138797 ENSG00000100124 ANKRD54 LIAR ankyrin repeat domain 54 protein-coding 122.667-75 chr4 18800656 18801009 + 0.666667 NA Intergenic Intergenic -778957 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 115.167-63 chr21 22014330 22014521 + 0.666667 NA intron (NR_109959, intron 5 of 5) HERVL-int|LTR|ERVL 84034 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 223.667-21 chr4 80324967 80325565 + 0.666667 NA Intergenic Intergenic -10454 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 135-21 chr12 92967980 92968298 + 0.666667 NA Intergenic MER113|DNA|hAT-Charlie -38844 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 257.333-6 chr14 65133677 65134107 + 0.666667 NA Intergenic Intergenic -31197 NR_073137 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 135.833-71 chr8 124864394 124864721 + 0.666667 NA Intergenic Intergenic -42499 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 186.5-65 chr8 118886373 118886719 + 0.666667 NA Intergenic L1M3d|LINE|L1 65339 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 119.833-32 chr17 48248447 48248754 + 0.666667 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -45747 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 132.333-117 chrX 128194873 128195139 + 0.666667 NA Intergenic Intergenic -142603 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 173-30 chr2 125652321 125652677 + 0.666667 NA Intergenic Intergenic 465486 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 114.667-53 chr2 83294599 83294870 + 0.666667 NA Intergenic L1M4|LINE|L1 -228080 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 133.667-19 chr11 73533095 73533352 + 0.666667 NA intron (NM_001286051, intron 1 of 5) MIRc|SINE|MIR 64889 NM_001286051 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 129-75 chr5 116450796 116451155 + 0.666667 NA intron (NR_109879, intron 2 of 2) intron (NR_109879, intron 2 of 2) 3477 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 148.667-42 chr2 237358767 237359080 + 0.666667 NA intron (NM_057166, intron 17 of 40) L2b|LINE|L2 55241 NM_057165 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 190-5 chr10 16997955 16998496 + 0.666667 NA intron (NM_001081, intron 28 of 66) MLT1C|LTR|ERVL-MaLR 131592 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 164.333-38 chr20 2894259 2894581 + 0.666667 NA intron (NM_080840, intron 1 of 22) intron (NM_080840, intron 1 of 22) 20924 NM_080840 5786 Hs.269577 NM_002836 ENSG00000132670 PTPRA HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA protein tyrosine phosphatase receptor type A protein-coding 119-24 chr12 43270359 43270610 + 0.666667 NA Intergenic Intergenic 115169 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 126.333-44 chr17 29299994 29300415 + 0.666667 NA Intergenic Intergenic -6056 NM_020772 57532 Hs.462598 NM_020772 ENSG00000108256 NUFIP2 182-FIP|82-FIP|FIP-82|PIG1 nuclear FMR1 interacting protein 2 protein-coding 248.333-7 chr4 2103552 2104199 + 0.666667 NA intron (NM_181808, intron 19 of 25) L1M2|LINE|L1 44548 NM_178557 339983 Hs.318529 NM_178557 ENSG00000185818 NAT8L CML3|NACED|NAT8-LIKE N-acetyltransferase 8 like protein-coding 129.667-97 chr7 79647049 79647525 + 0.666667 NA Intergenic L1PA13|LINE|L1 193327 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 196.5-21 chr2 113879426 113879771 + 0.666667 NA intron (NR_110174, intron 1 of 4) intron (NR_110174, intron 1 of 4) -10336 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 264.5-18 chr8 84198302 84198856 + 0.666667 NA intron (NM_001354323, intron 1 of 7) L1MA2|LINE|L1 13913 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 158.5-30 chr18 12634979 12635549 + 0.666667 NA intron (NM_020148, intron 1 of 15) intron (NM_020148, intron 1 of 15) 21468 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 126.5-15 chr12 54540465 54541000 + 0.666667 NA intron (NM_001184976, intron 30 of 30) intron (NM_001184976, intron 30 of 30) -8661 NM_001288768 5153 Hs.530871 NM_000924 ENSG00000123360 PDE1B HEL-S-79p|PDE1B1|PDES1B phosphodiesterase 1B protein-coding 342.667-5 chr3 101859695 101860599 + 0.666667 NA 3' UTR (NM_031419, exon 12 of 12) 3' UTR (NM_031419, exon 12 of 12) 10633 NM_031419 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 151.833-54 chr7 146309681 146310050 + 0.666667 NA Intergenic GA-rich|Low_complexity|Low_complexity -464406 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 145.5-42 chr22 25212084 25212570 + 0.666667 NA Intergenic Intergenic -7312 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 153.5-65 chr6 120180230 120180542 + 0.666667 NA Intergenic LTR68|LTR|ERV1 165207 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 277-7 chr16 21183424 21183884 + 0.666667 NA Intergenic L1PA15|LINE|L1 -24213 NM_017539 55567 Hs.526500 NM_017539 ENSG00000158486 DNAH3 DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3 dynein axonemal heavy chain 3 protein-coding 134.333-33 chr14 48688277 48688676 + 0.666667 NA Intergenic Intergenic -893462 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 182.167-15 chr15 94397385 94397956 + 0.666667 NA intron (NM_018349, intron 13 of 21) intron (NM_018349, intron 13 of 21) 41740 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 157.167-26 chr15 63672480 63672964 + 0.666667 NA intron (NM_003922, intron 38 of 77) intron (NM_003922, intron 38 of 77) -71895 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 127.833-9 chr10 116843767 116844128 + 0.666667 NA intron (NM_001330164, intron 1 of 12) MER5B|DNA|hAT-Charlie -5552 NM_001242699 387712 Hs.693248 NM_001242699 ENSG00000188316 ENO4 C10orf134 enolase 4 protein-coding 123-17 chr13 57484328 57484634 + 0.666667 NA Intergenic Intergenic -147263 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 163.167-43 chr7 55904736 55905248 + 0.666667 NA intron (NM_182633, intron 1 of 6) AluSz|SINE|Alu 17536 NM_001366796 349075 Hs.660834 NM_182633 ENSG00000178665 ZNF713 - zinc finger protein 713 protein-coding 153.333-12 chr11 43249293 43249573 + 0.666667 NA Intergenic Intergenic 19936 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 169.333-57 chr5 56996021 56996330 + 0.666667 NA Intergenic Intergenic -44045 NM_001297598 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 158.167-47 chr7 18960158 18960617 + 0.666667 NA intron (NM_001321868, intron 24 of 25) (TTA)n|Simple_repeat|Simple_repeat 157249 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 126.667-42 chr2 104773384 104773616 + 0.666667 NA Intergenic L1MB2|LINE|L1 -15781 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 157-47 chr20 6571526 6571906 + 0.666667 NA Intergenic Intergenic 144984 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 142.333-61 chr20 47752849 47753088 + 0.666667 NA intron (NM_198596, intron 2 of 20) AluSx1|SINE|Alu 33096 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 162.333-52 chr4 76525697 76525971 + 0.666667 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) -47734 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 221.167-14 chr2 7413061 7413486 + 0.666667 NA Intergenic L1MC1|LINE|L1 -7988 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 212.667-29 chr4 52226982 52227492 + 0.666667 NA Intergenic Intergenic 175933 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 171.5-54 chr6 23766683 23767180 + 0.666667 NA Intergenic Intergenic -359284 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 161-16 chr14 42793836 42794286 + 0.666667 NA Intergenic Intergenic 1187205 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 132.833-43 chr21 14283087 14283403 + 0.666667 NA intron (NR_003087, intron 2 of 5) intron (NR_003087, intron 2 of 5) 9446 NR_003088 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 127-88 chr6 120922616 120922950 + 0.666667 NA Intergenic Intergenic 411697 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 221.667-40 chr8 130435718 130436075 + 0.666667 NA intron (NM_001362925, intron 1 of 29) intron (NM_001362925, intron 1 of 29) 7764 NM_001362924 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 136.333-103 chr9 19260853 19261177 + 0.666667 NA intron (NR_073201, intron 1 of 31) L1PA5|LINE|L1 30322 NM_001330640 55667 Hs.249591 NM_017925 ENSG00000137145 DENND4C C9orf55|C9orf55B|RAB10GEF|bA513M16.3 DENN domain containing 4C protein-coding 124.167-14 chr11 110814257 110814443 + 0.666667 NA Intergenic L1MB2|LINE|L1 -101161 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 148.333-81 chr5 24295245 24295718 + 0.666667 NA Intergenic Intergenic 344133 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 133.167-44 chr4 30284665 30285033 + 0.666667 NA Intergenic Intergenic -435520 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 202.333-13 chr14 84221178 84221684 + 0.666667 NA Intergenic Intergenic -1050501 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 124-33 chr14 43341308 43341542 + 0.666667 NA Intergenic L1PA10|LINE|L1 1165858 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 164.833-50 chr8 124326889 124327397 + 0.666667 NA intron (NM_194291, intron 3 of 6) intron (NM_194291, intron 3 of 6) 45556 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 151-43 chr22 25811873 25812236 + 0.666667 NA intron (NM_001318245, intron 12 of 43) MIR|SINE|MIR 69866 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 214.333-18 chr14 70524219 70524571 + 0.666667 NA exon (NM_003814, exon 2 of 2) exon (NM_003814, exon 2 of 2) 10609 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 131.333-83 chr4 113744235 113744676 + 0.666667 NA intron (NM_001321585, intron 2 of 19) L2c|LINE|L2 17283 NM_001321591 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 217.667-26 chr22 25214168 25214635 + 0.666667 NA Intergenic L2b|LINE|L2 -5238 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 178-65 chr8 82718599 82719105 + 0.666667 NA Intergenic Charlie2b|DNA|hAT-Charlie -193252 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 138.167-28 chr16 86124455 86124707 + 0.666667 NA Intergenic Intergenic -71600 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 160-8 chr1 221148909 221149346 + 0.666667 NA Intergenic Intergenic 187169 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 177.667-48 chr3 16217852 16218342 + 0.666667 NA intron (NM_001319052, intron 1 of 4) MER5A|DNA|hAT-Charlie 1321 NM_001319052 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 150.333-82 chr5 23534405 23534673 + 0.666667 NA Intergenic Intergenic 26884 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 187.333-20 chr15 67332135 67332566 + 0.666667 NA intron (NM_001322475, intron 3 of 17) HAL1b|LINE|L1 -77152 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 142.167-45 chr2 237232619 237233083 + 0.666667 NA Intergenic AluSg|SINE|Alu 146962 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 182.167-30 chr4 106624596 106625066 + 0.666667 NA Intergenic L1ME1|LINE|L1 191207 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 124-68 chr4 100111468 100111762 + 0.666667 NA Intergenic MIRb|SINE|MIR -78418 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 176-52 chr8 119407901 119408299 + 0.666667 NA Intergenic L1PA16|LINE|L1 -8346 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 113.333-51 chr2 32360390 32360597 + 0.666667 NA intron (NM_016252, intron 1 of 73) intron (NM_016252, intron 1 of 73) 3465 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 176.667-84 chr9 69231058 69231502 + 0.666667 NA intron (NM_001369870, intron 12 of 23) AluSz|SINE|Alu 26125 NM_001170416 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 140.333-67 chr5 96698492 96698938 + 0.666667 NA intron (NM_001330629, intron 3 of 30) intron (NM_001330629, intron 3 of 30) -3945 NM_001330632 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 200.5-32 chr3 85106366 85106939 + 0.666667 NA intron (NM_001167674, intron 1 of 9) L2c|LINE|L2 -44388 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 146.5-59 chr3 194889300 194889570 + 0.666667 NA Intergenic MIR|SINE|MIR -120726 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 118.333-103 chr7 31855260 31855515 + 0.666667 NA intron (NM_001191059, intron 8 of 18) MLT1E2|LTR|ERVL-MaLR 168172 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 117.833-41 chr2 13727223 13727399 + 0.666667 NA Intergenic Intergenic 673647 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 210.833-30 chr8 8687709 8688159 + 0.666667 NA Intergenic Intergenic -14003 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 149-8 chr1 71286660 71286960 + 0.666667 NA Intergenic L1ME3Cz|LINE|L1 205486 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 137-46 chr18 27002987 27003224 + 0.666667 NA intron (NM_031422, intron 4 of 5) intron (NM_031422, intron 4 of 5) -137302 NM_001317384 361 Hs.315369 NM_001650 ENSG00000171885 AQP4 MIWC|WCH4 aquaporin 4 protein-coding 154.833-55 chr8 14133190 14133744 + 0.666667 NA intron (NM_001322880, intron 4 of 6) L1MB4|LINE|L1 503777 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 176-47 chr8 82449450 82449922 + 0.666667 NA Intergenic L1PA15|LINE|L1 -462418 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 192-5 chr10 24651840 24652240 + 0.666667 NA intron (NM_001367450, intron 4 of 27) MER58C|DNA|hAT-Charlie -29197 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 126.333-43 chr17 14554102 14554337 + 0.666667 NA Intergenic LTR78|LTR|ERV1 250479 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 193-32 chr3 108651990 108652358 + 0.666667 NA intron (NM_014648, intron 18 of 32) intron (NM_014648, intron 18 of 32) 62452 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 167.667-6 chr1 168236286 168236757 + 0.666667 NA intron (NM_199344, intron 4 of 7) intron (NM_199344, intron 4 of 7) 10517 NM_199344 375035 Hs.645435 NM_199344 ENSG00000213064 SFT2D2 UNQ512|dJ747L4.C1.2 SFT2 domain containing 2 protein-coding 126.833-17 chr10 99397051 99397256 + 0.666667 NA 3' UTR (NM_002079, exon 9 of 9) 3' UTR (NM_002079, exon 9 of 9) 33471 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 115-23 chr13 89373499 89373729 + 0.666667 NA Intergenic Intergenic 126895 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 138.5-19 chr11 124389558 124389843 + 0.666667 NA Intergenic Intergenic -6357 NM_001005468 26595 Hs.576944 NM_001005468 ENSG00000284680 OR8B2 OR11-309|OR11-310 olfactory receptor family 8 subfamily B member 2 protein-coding 176.333-47 chr4 114357358 114357878 + 0.666667 NA Intergenic L1MA3|LINE|L1 -240784 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 126.333-93 chr6 106755348 106755580 + 0.666667 NA intron (NR_147987, intron 1 of 2) AluJb|SINE|Alu -28661 NR_030314 693172 NR_030314 ENSG00000207577 MIR587 MIRN587|hsa-mir-587 microRNA 587 ncRNA 175.833-33 chr4 43472892 43473276 + 0.666667 NA intron (NR_146993, intron 1 of 2) L1M1|LINE|L1 19459 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 164.5-13 chr11 82055058 82055556 + 0.666667 NA intron (NR_120571, intron 5 of 7) Tigger1|DNA|TcMar-Tigger -164471 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 188.667-18 chr14 53717896 53718261 + 0.666667 NA Intergenic Intergenic 230406 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 243.5-22 chr4 128676125 128676773 + 0.666667 NA Intergenic MIRb|SINE|MIR -133251 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 127.167-69 chr4 128638074 128638294 + 0.666667 NA Intergenic Intergenic -171516 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 144.667-80 chr5 67573857 67574313 + 0.666667 NA Intergenic L1M4|LINE|L1 72704 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 192.333-30 chr22 35197278 35197604 + 0.666667 NA intron (NR_126356, intron 1 of 5) intron (NR_126356, intron 1 of 5) 33615 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 137-94 chr8 90007983 90008466 + 0.666667 NA intron (NM_001330575, intron 3 of 11) L2a|LINE|L2 6747 NM_001359 1666 Hs.492212 NM_001359 ENSG00000104325 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl-CoA reductase 1 protein-coding 180.167-11 chr12 59454499 59454865 + 0.666667 NA Intergenic L1PB1|LINE|L1 -141347 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 130.667-85 chr6 149117043 149117334 + 0.666667 NA Intergenic Intergenic -84527 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 275.667-3 chr11 83990048 83990820 + 0.666667 NA intron (NM_001142699, intron 11 of 27) intron (NM_001142699, intron 11 of 27) 282846 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 170.5-26 chr19 29685858 29686239 + 0.666667 NA Intergenic AluSg|SINE|Alu 20587 NM_024310 79156 Hs.466383 NM_024310 ENSG00000166289 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology and FYVE domain containing 1 protein-coding 125.333-28 chr11 100294298 100294561 + 0.666667 NA intron (NM_001243270, intron 17 of 23) intron (NM_001243270, intron 17 of 23) -392859 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 170-44 chr21 22673306 22673777 + 0.666667 NA Intergenic L1M5|LINE|L1 -405743 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 170.667-32 chr2 50644063 50644411 + 0.666667 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 52025 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 217.334-8 chr7 135931091 135931713 + 0.666667 NA intron (NM_001128619, intron 3 of 3) L2c|LINE|L2 45957 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 161-61 chr6 62353809 62354190 + 0.666667 NA Intergenic Intergenic -67772 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 114-68 chr3 117564774 117565058 + 0.666667 NA Intergenic L1PA8|LINE|L1 126009 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 181-10 chr10 107592728 107593235 + 0.666667 NA Intergenic AluY|SINE|Alu -428275 NM_001206569 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 172.667-2 chr1 100506992 100507368 + 0.666667 NA intron (NM_001319210, intron 16 of 16) intron (NM_001319210, intron 16 of 16) -30959 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 147.333-45 chr2 154415401 154415985 + 0.666667 NA intron (NM_052917, intron 11 of 12) intron (NM_052917, intron 11 of 12) 41745 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 161.667-68 chr5 44054068 44054611 + 0.666667 NA Intergenic L1MA4|LINE|L1 -334393 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 180.333-45 chr4 52683964 52684451 + 0.666667 NA Intergenic L1PA10|LINE|L1 24801 NR_125363 643783 Hs.631514 NR_125363 ENSG00000248866 USP46-AS1 - USP46 antisense RNA 1 ncRNA 152-56 chr9 37725755 37726269 + 0.666667 NA intron (NM_001371225, intron 7 of 15) intron (NM_001371225, intron 7 of 15) -27791 NM_001286950 158234 Hs.655614 NM_144964 ENSG00000165275 TRMT10B RG9MTD3|bA3J10.9 tRNA methyltransferase 10B protein-coding 131.667-98 chr5 28514167 28514482 + 0.666667 NA Intergenic Intergenic -226659 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 122.833-43 chr2 19106608 19106880 + 0.666667 NA Intergenic Intergenic -79773 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 115.667-66 chr20 48090859 48091203 + 0.666667 NA Intergenic MIRb|SINE|MIR -100914 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 134.167-87 chr9 98763436 98763824 + 0.666667 NA intron (NM_173551, intron 11 of 14) L1MD|LINE|L1 32925 NM_173551 203286 Hs.406890 NM_173551 ENSG00000165138 ANKS6 ANKRD14|NPHP16|PKDR1|SAMD6 ankyrin repeat and sterile alpha motif domain containing 6 protein-coding 207.666 chr1 8586422 8587041 + 0.666667 NA intron (NM_001042681, intron 4 of 22) intron (NM_001042681, intron 4 of 22) -91818 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 119.667-52 chr2 185387567 185387809 + 0.666667 NA Intergenic Intergenic -220616 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 178-44 chr5 10247737 10248100 + 0.666667 NA intron (NR_047670, intron 1 of 5) intron (NR_047670, intron 1 of 5) 1970 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 119.833-76 chr6 63685461 63685942 + 0.666667 NA exon (NM_015153, exon 3 of 15) exon (NM_015153, exon 3 of 15) 39175 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 159-22 chr14 65773598 65774071 + 0.666667 NA Intergenic Intergenic 302732 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 129.333-41 chr17 78097104 78097438 + 0.666667 NA intron (NM_018996, intron 17 of 20) intron (NM_018996, intron 17 of 20) 14528 NR_040071 100131096 Hs.635442 NR_040071 ENSG00000204282 TNRC6C-AS1 TMC6|lnc TNRC6C antisense RNA 1 ncRNA 211-22 chr2 138745039 138745649 + 0.666667 NA intron (NM_007226, intron 1 of 1) L1ME3Cz|LINE|L1 35046 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 132.667-4 chr1 176612493 176612714 + 0.666667 NA intron (NM_021936, intron 3 of 4) L4_A_Mam|LINE|RTE-X 149428 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 163.333-72 chr7 23025429 23025780 + 0.666667 NA Intergenic Intergenic -11474 NM_001363466 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 146.333-80 chr5 55541187 55541479 + 0.666667 NA Intergenic Intergenic -6255 NM_176895 8611 Hs.696231 NM_003711 ENSG00000067113 PLPP1 LLP1a|LPP1|PAP-2a|PAP2|PPAP2A phospholipid phosphatase 1 protein-coding 157.333-18 chr13 66908950 66909407 + 0.666667 NA intron (NM_001318372, intron 2 of 4) L1P4|LINE|L1 -68211 NR_046636 100874086 Hs.577908 NR_046636 ENSG00000225263 PCDH9-AS3 - PCDH9 antisense RNA 3 ncRNA 142.333-88 chr6 63840721 63841180 + 0.666667 NA intron (NM_001292009, intron 36 of 43) L1MA5|LINE|L1 34114 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 162.333-69 chr7 31007386 31007839 + 0.666667 NA Intergenic Intergenic 43659 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 259-22 chr5 127995631 127996166 + 0.666667 NA intron (NR_152803, intron 1 of 1) intron (NR_152803, intron 1 of 1) 87277 NR_152800 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 223-5 chr11 96256016 96256651 + 0.666667 NA intron (NM_032427, intron 1 of 4) L2c|LINE|L2 -85105 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 167.833-49 chr6 52214809 52215327 + 0.666667 NA Intergenic Intergenic 28693 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 225-25 chr4 115736744 115737325 + 0.666667 NA Intergenic Intergenic -562691 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 224-13 chr14 69455553 69456172 + 0.666667 NA exon (NM_001252148, exon 5 of 6) exon (NM_001252148, exon 5 of 6) -28866 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 121-7 chr10 55450486 55450895 + 0.666667 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -148352 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 207.666-6 chr6 14473482 14474095 + 0.666667 NA Intergenic L3|LINE|CR1 -188334 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 190.5-47 chr7 37119415 37119800 + 0.666667 NA intron (NM_001206480, intron 14 of 21) intron (NM_001206480, intron 14 of 21) 121811 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 201.167-22 chr5 59020366 59020847 + 0.666667 NA intron (NM_006203, intron 6 of 14) MIR3|SINE|MIR 18870 NM_001197221 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 165.333-74 chrX 66756349 66756758 + 0.666667 NA Intergenic L1MB8|LINE|L1 -117255 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 117.667-19 chr10 74859683 74859906 + 0.666667 NA intron (NM_001370144, intron 3 of 15) intron (NM_001370144, intron 3 of 15) 33194 NM_012330 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 123.667-8 chr1 186127813 186128149 + 0.666667 NA intron (NM_031935, intron 82 of 106) intron (NM_031935, intron 82 of 106) -168292 NM_001127708 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 130.667-102 chrX 80897433 80897786 + 0.666667 NA Intergenic MER4B-int|LTR|ERV1 -87732 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 143.333-37 chr2 149304535 149304905 + 0.666667 NA Intergenic Intergenic -25265 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 175.5-40 chr3 101195028 101195393 + 0.666667 NA Intergenic MSTA|LTR|ERVL-MaLR 125365 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 212.667-25 chr2 132756993 132757385 + 0.666667 NA intron (NM_207481, intron 14 of 17) intron (NM_207481, intron 14 of 17) -85663 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 197.167-13 chr14 67681855 67682250 + 0.666667 NA intron (NM_016026, intron 6 of 6) MSTD|LTR|ERVL-MaLR -7420 NM_006370 10490 Hs.741177 NM_006370 ENSG00000100568 VTI1B VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 vesicle transport through interaction with t-SNAREs 1B protein-coding 178.667-55 chr5 123058759 123059162 + 0.666667 NA Intergenic L1PB3|LINE|L1 -22235 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 235-9 chr12 65989117 65989810 + 0.666667 NA Intergenic MER57-int|LTR|ERV1 34263 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 192-34 chr4 123427326 123427876 + 0.666667 NA Intergenic AluY|SINE|Alu 28061 NM_005841 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 215.5-7 chr10 123247830 123248228 + 0.666667 NA Intergenic Intergenic 93627 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 120.333-98 chr5 128278236 128278473 + 0.666667 NA intron (NM_001999, intron 57 of 64) MIR|SINE|MIR 194588 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 155.667-84 chr8 119455153 119455445 + 0.666667 NA Intergenic Intergenic 38853 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 185.333-56 chr6 143791419 143791885 + 0.666667 NA intron (NM_001100165, intron 10 of 11) L1MEd|LINE|L1 -51621 NM_001329953 84946 Hs.185675 NM_032860 ENSG00000135521 LTV1 C6orf93|dJ468K18.4 LTV1 ribosome biogenesis factor protein-coding 155.333-31 chr14 83210269 83210702 + 0.666667 NA Intergenic Intergenic 567853 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 132-86 chr7 7572743 7573033 + 0.666667 NA exon (NM_019005, exon 4 of 13) exon (NM_019005, exon 4 of 13) 4862 NM_001370078 54468 Hs.520215 NM_019005 ENSG00000164654 MIOS MIO|Sea4|Yulink meiosis regulator for oocyte development protein-coding 147.667-44 chr3 81512060 81512379 + 0.666667 NA intron (NM_000158, intron 14 of 15) L1PA16|LINE|L1 249426 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 130.5-65 chr5 96910827 96911240 + 0.666667 NA intron (NR_137637, intron 15 of 18) (TAT)n|Simple_repeat|Simple_repeat -25047 NM_005575 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 191-56 chrX 94329575 94330097 + 0.666667 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat 655630 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 143.333-20 chr14 43280206 43280583 + 0.666667 NA Intergenic L1ME1|LINE|L1 1226889 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 239.833-8 chr11 80900352 80900973 + 0.666667 NA Intergenic L2|LINE|L2 -137859 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 217-2 chr10 38491436 38491999 + 0.666667 NA Intergenic Intergenic 63571 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 119.333-60 chr20 59065763 59066124 + 0.666667 NA Intergenic Intergenic -23097 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 133.333-43 chr17 28436111 28436320 + 0.666667 NA Intergenic HAL1|LINE|L1 -30003 NM_080669 113235 Hs.446689 NM_080669 ENSG00000076351 SLC46A1 G21|HCP1|PCFT solute carrier family 46 member 1 protein-coding 120.333-115 chr8 81603830 81604134 + 0.666667 NA TTS (NR_146081) TTS (NR_146081) 27295 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 165.5-38 chr3 72707368 72707727 + 0.666667 NA Intergenic L1MB8|LINE|L1 -43298 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 152.333-52 chr5 29265324 29265938 + 0.666667 NA Intergenic MER2B|DNA|TcMar-Tigger 122128 NR_130777 101929660 Hs.171348 NR_130777 LINC02109 - long intergenic non-protein coding RNA 2109 ncRNA 177.333-44 chr3 193567111 193567609 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -12465 NM_032279 84239 Hs.674423 NM_032279 ENSG00000127249 ATP13A4 - ATPase 13A4 protein-coding 164-15 chr12 116122206 116122464 + 0.666667 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) 26319 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 184.167-5 chr1 199040611 199041072 + 0.666667 NA intron (NR_126351, intron 1 of 2) intron (NR_126351, intron 1 of 2) -21877 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 166.333-55 chr4 64703698 64704007 + 0.666667 NA Intergenic Intergenic -294392 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 193.667-42 chr5 126689824 126690149 + 0.666667 NA Intergenic Charlie1b|DNA|hAT-Charlie 58281 NM_207408 389320 Hs.177983 NM_207408 ENSG00000196900 TEX43 C5orf48|Tseg7 testis expressed 43 protein-coding 176.5-45 chr3 105894786 105895110 + 0.666667 NA Intergenic Intergenic -25547 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 233.667-15 chr2 205823538 205824035 + 0.666667 NA Intergenic AluSg7|SINE|Alu 141285 NM_018534 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 123-5 chr1 216896850 216897331 + 0.666667 NA intron (NM_001243507, intron 2 of 7) intron (NM_001243507, intron 2 of 7) 42583 NM_001243513 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 114.333-37 chr14 44587359 44587546 + 0.666667 NA Intergenic MIR|SINE|MIR 80043 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 132.167-13 chr11 32726095 32726374 + 0.666667 NA intron (NM_001008391, intron 2 of 17) L1MEg|LINE|L1 68424 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 152.667-65 chr4 80327908 80328181 + 0.666667 NA Intergenic L2b|LINE|L2 -7676 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 152.667-17 chr11 112237943 112238282 + 0.666667 NA Intergenic Intergenic 11684 NM_000317 5805 Hs.503860 NM_000317 ENSG00000150787 PTS PTPS 6-pyruvoyltetrahydropterin synthase protein-coding 190.167-10 chr14 58366851 58367316 + 0.666667 NA intron (NM_002892, intron 23 of 23) intron (NM_002892, intron 23 of 23) -28847 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 133.833-14 chr11 42492827 42493082 + 0.666667 NA Intergenic Intergenic -239264 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 138.833-40 chr2 155115208 155115533 + 0.666667 NA Intergenic L1M4b|LINE|L1 416675 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 177.333-40 chr20 59584566 59584921 + 0.666667 NA intron (NM_001199505, intron 1 of 12) intron (NM_001199505, intron 1 of 12) 7234 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 156.833-27 chr2 192394275 192394708 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -199558 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 120.333-95 chr5 104141086 104141403 + 0.666667 NA Intergenic L1MC4|LINE|L1 -578455 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 158.833-31 chr2 167902981 167903258 + 0.666667 NA intron (NR_131227, intron 1 of 4) MLT1K|LTR|ERVL-MaLR 38025 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 140.333-12 chr10 98598531 98598902 + 0.666667 NA intron (NM_021828, intron 9 of 11) L1MA8|LINE|L1 -151753 NM_182639 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 135.333-48 chr2 233748109 233748485 + 0.666667 NA intron (NM_019093, intron 1 of 4) intron (NM_019093, intron 1 of 4) -4299 NM_001001394 414061 Hs.725533 NM_001001394 DNAJB3 HCG3 DnaJ heat shock protein family (Hsp40) member B3 protein-coding 115.833-27 chr16 30951235 30951607 + 0.666667 NA intron (NM_152288, intron 1 of 1) MIR|SINE|MIR 2353 NM_152288 93129 Hs.745104 NM_152288 ENSG00000175938 ORAI3 TMEM142C ORAI calcium release-activated calcium modulator 3 protein-coding 118-88 chr4 111557838 111558085 + 0.666667 NA Intergenic L1P3|LINE|L1 -587493 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 208.667-35 chr5 108718576 108718947 + 0.666667 NA Intergenic Intergenic 9500 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 159.667-10 chr1 246909306 246909835 + 0.666667 NA intron (NM_015446, intron 4 of 35) Tigger7|DNA|TcMar-Tigger 21788 NM_015446 25909 Hs.300887 NM_015446 ENSG00000153207 AHCTF1 ELYS|MST108|MSTP108|TMBS62 AT-hook containing transcription factor 1 protein-coding 154.333-56 chr4 86887246 86887503 + 0.666667 NA TTS (NM_001369888) TTS (NM_001369888) 5048 NM_001369888 132989 Hs.339646 NM_144645 ENSG00000163633 C4orf36 - chromosome 4 open reading frame 36 protein-coding 151.333-56 chr21 28393128 28393509 + 0.666667 NA Intergenic MLT1H|LTR|ERVL-MaLR -146000 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 180.667-42 chr2 234119718 234120147 + 0.666667 NA Intergenic Intergenic 69230 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 162.833-47 chr7 86825340 86825727 + 0.666667 NA intron (NM_001363522, intron 3 of 4) intron (NM_001363522, intron 3 of 4) 140366 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 133-67 chr4 117570567 117570799 + 0.666667 NA intron (NR_125757, intron 2 of 3) ERVL-E-int|LTR|ERVL 142285 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 203.5-26 chr22 43651143 43651473 + 0.666667 NA intron (NM_198856, intron 15 of 29) THE1B-int|LTR|ERVL-MaLR 135054 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 140.167-30 chr2 8157637 8157902 + 0.666667 NA intron (NR_034135, intron 7 of 8) intron (NR_034135, intron 7 of 8) 170650 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 127.333-102 chr7 4431337 4431691 + 0.666667 NA Intergenic L1M3|LINE|L1 -250781 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 239-2 chr1 214687929 214688556 + 0.666667 NA Intergenic L2c|LINE|L2 85047 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 115.833-74 chr7 52614876 52615129 + 0.666667 NA Intergenic Intergenic -420631 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 176.167-31 chr4 36637629 36638033 + 0.666667 NA intron (NR_149124, intron 1 of 4) intron (NR_149124, intron 1 of 4) 4069 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 175.5-27 chr20 8366583 8367107 + 0.666667 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 118141 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 128.5-78 chr7 116664054 116664310 + 0.666667 NA Intergenic Intergenic -8014 NM_001127500 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 214.667-26 chr4 90940861 90941295 + 0.666667 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 706047 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 113.667-119 chr7 79665956 79666214 + 0.666667 NA Intergenic MER33|DNA|hAT-Charlie 212125 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 215.667-3 chr1 153265631 153266040 + 0.666667 NA Intergenic L1ME3A|LINE|L1 6148 NM_000427 4014 Hs.251680 NM_000427 ENSG00000203782 LOR - loricrin protein-coding 217.167-11 chr2 115518726 115519075 + 0.666667 NA intron (NM_001321912, intron 5 of 25) intron (NM_001321912, intron 5 of 25) 175085 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 116.667-2 chr1 105607557 105607781 + 0.666667 NA intron (NR_125955, intron 1 of 3) intron (NR_125955, intron 1 of 3) 11266 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 150.833-53 chr8 131023439 131023721 + 0.666667 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 17329 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 213.667-41 chr7 133745028 133745613 + 0.666667 NA intron (NM_021807, intron 10 of 17) MIR|SINE|MIR 79568 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 113.333-112 chr8 140706340 140706651 + 0.666667 NA intron (NR_148037, intron 25 of 34) L1MB8|LINE|L1 12074 NM_001352752 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 186-40 chr4 124724973 124725488 + 0.666667 NA Intergenic Intergenic -12498 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 115.667-19 chr11 65194810 65195010 + 0.666667 NA intron (NR_040008, intron 9 of 20) L1MB7|LINE|L1 12982 NM_005186 823 Hs.502842 NM_005186 ENSG00000014216 CAPN1 CANP|CANP1|CANPL1|SPG76|muCANP|muCL calpain 1 protein-coding 158-38 chr4 139770708 139771024 + 0.666667 NA intron (NM_018717, intron 2 of 4) intron (NM_018717, intron 2 of 4) 105047 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 152.167-65 chr7 12504508 12505017 + 0.666667 NA intron (NR_136263, intron 1 of 3) intron (NR_136263, intron 1 of 3) 365 NR_136263 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 131.167-9 chr10 33579277 33579766 + 0.666667 NA Intergenic Intergenic 193159 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 155-13 chr10 67661711 67662059 + 0.666667 NA intron (NM_001291133, intron 1 of 8) L1ME1|LINE|L1 3775 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 170.667-13 chr12 87510857 87511274 + 0.666667 NA Intergenic Intergenic 180326 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 145.5-7 chr11 59632814 59633176 + 0.666667 NA Intergenic AluSx|SINE|Alu -17221 NM_002556 5007 Hs.597091 NM_002556 ENSG00000110048 OSBP OSBP1 oxysterol binding protein protein-coding 121.333-45 chr2 31661667 31661923 + 0.666667 NA Intergenic L1MEf|LINE|L1 -80857 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 330.167-3 chr2 194246901 194247646 + 0.666667 NA Intergenic Intergenic -96996 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 141-47 chr2 194007233 194007598 + 0.666667 NA Intergenic Intergenic -336854 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 293.833-2 chr12 62320532 62321098 + 0.666667 NA intron (NR_147080, intron 4 of 19) intron (NR_147080, intron 4 of 19) 60411 NR_147082 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 170.833-29 chr3 150246104 150246421 + 0.666667 NA Intergenic L1ME3B|LINE|L1 7562 NR_110167 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 134-107 chr8 128126540 128126873 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR -23410 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 219.834-2 chr10 53324395 53325142 + 0.666667 NA Intergenic Intergenic -553068 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 122-41 chr2 179961149 179961655 + 0.666667 NA intron (NM_020943, intron 13 of 19) intron (NM_020943, intron 13 of 19) 45895 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 290.5-14 chr5 51029980 51030520 + 0.666667 NA Intergenic L1MB2|LINE|L1 -60063 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 146-7 chr10 97227236 97227500 + 0.666667 NA intron (NM_032900, intron 11 of 11) intron (NM_032900, intron 11 of 11) -41409 NM_003061 6585 Hs.632082 NM_003061 ENSG00000187122 SLIT1 MEGF4|SLIL1|SLIT-1|SLIT3 slit guidance ligand 1 protein-coding 199.333-2 chr1 78573754 78574197 + 0.666667 NA Intergenic L1ME2z|LINE|L1 -46473 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 148.5-47 chr3 66603859 66604162 + 0.666667 NA Intergenic L2a|LINE|L2 -103589 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 122.667-73 chr3 183129225 183129454 + 0.666667 NA intron (NM_014398, intron 5 of 5) HAL1b|LINE|L1 -29752 NM_001293273 56922 Hs.47649 NM_020166 ENSG00000078070 MCCC1 MCC-B|MCCA methylcrotonoyl-CoA carboxylase 1 protein-coding 123.333-116 chr9 5441982 5442235 + 0.666667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -4183 NM_018465 55848 Hs.584242 NM_018465 ENSG00000107020 PLGRKT AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT) plasminogen receptor with a C-terminal lysine protein-coding 185-56 chr9 24718045 24718362 + 0.666667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -172306 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 138-77 chr4 80167000 80167222 + 0.666667 NA Intergenic L1MD2|LINE|L1 -18159 NM_020226 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 144.5-66 chr4 54156620 54156942 + 0.666667 NA Intergenic MLT1K|LTR|ERVL-MaLR 56618 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 195-6 chr10 81407484 81408003 + 0.666667 NA Intergenic AluY|SINE|Alu -467451 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 127.667-18 chr11 91448370 91448701 + 0.666667 NA Intergenic L1PREC2|LINE|L1 -579333 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 136.333-89 chr7 25517435 25517797 + 0.666667 NA Intergenic L1MDb|LINE|L1 145524 NR_157823 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 194.5-18 chr2 82260562 82260990 + 0.666667 NA Intergenic MER83B-int|LTR|ERV1 -596027 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 136-79 chr8 8938019 8938276 + 0.666667 NA Intergenic Intergenic -44517 NM_004225 9258 Hs.379414 NM_004225 ENSG00000147324 MFHAS1 LRRC65|MASL1|ROCO4 malignant fibrous histiocytoma amplified sequence 1 protein-coding 135.667-26 chr11 118703306 118703695 + 0.666667 NA Intergenic Intergenic -23850 NM_007180 11181 Hs.129712 NM_007180 ENSG00000118094 TREH TRE|TREA|TREHD trehalase protein-coding 120-80 chr4 34460970 34461295 + 0.666667 NA Intergenic Intergenic -191385 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 125.667-71 chr22 20919217 20919562 + 0.666667 NA intron (NR_156180, intron 1 of 3) intron (NR_156180, intron 1 of 3) 1982 NM_005207 1399 Hs.5613 NM_005207 ENSG00000099942 CRKL - CRK like proto-oncogene, adaptor protein protein-coding 159.167-7 chr10 72797933 72798327 + 0.666667 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) 77101 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 137.167-39 chr21 27625867 27626183 + 0.666667 NA Intergenic Intergenic -96354 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 167.667-21 chr13 59702081 59702408 + 0.666667 NA intron (NM_001258366, intron 26 of 26) intron (NM_001258366, intron 26 of 26) -310474 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 207.833-32 chr7 40552020 40552458 + 0.666667 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 417263 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 208-21 chr20 57776818 57777328 + 0.666667 NA Intergenic L1MA7|LINE|L1 -65537 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 214-2 chr1 99437028 99437418 + 0.666667 NA Intergenic AluSc8|SINE|Alu 50581 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 177-54 chr5 12759119 12759446 + 0.666667 NA intron (NR_033383, intron 3 of 3) intron (NR_033383, intron 3 of 3) 91423 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 140.333-32 chr2 45346091 45346554 + 0.666667 NA Intergenic Intergenic -91381 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 202-15 chr17 58366150 58366706 + 0.666667 NA intron (NM_001305544, intron 3 of 9) intron (NM_001305544, intron 3 of 9) -14227 NM_003168 6827 Hs.439481 NM_003168 ENSG00000213246 SUPT4H1 SPT4|SPT4H|SUPT4H|Supt4a SPT4 homolog, DSIF elongation factor subunit protein-coding 117.833-14 chr11 63023026 63023277 + 0.666667 NA Intergenic MIRb|SINE|MIR -7306 NM_001184733 9376 Hs.266223 NM_004254 ENSG00000149452 SLC22A8 OAT3 solute carrier family 22 member 8 protein-coding 130-35 chr14 58488658 58488926 + 0.666667 NA exon (NM_001364701, exon 24 of 31) exon (NM_001364701, exon 24 of 31) 49111 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 117.667-137 chrX 103324318 103324538 + 0.666667 NA Intergenic Intergenic -5758 NM_001348258 56849 Hs.21861 NM_152278 ENSG00000182916 TCEAL7 WEX5 transcription elongation factor A like 7 protein-coding 224.667-22 chr3 83661393 83662043 + 0.666667 NA Intergenic L1MC4|LINE|L1 1207857 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 161.667-77 chr7 21104708 21104999 + 0.666667 NA Intergenic Intergenic 269422 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 265.833-4 chr16 86926087 86926487 + 0.666667 NA Intergenic MIRb|SINE|MIR -131497 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 169.833-39 chr8 98350534 98350903 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR 43020 NR_162095 113218497 NR_162095 MIR9903 - microRNA 9903 ncRNA 115.5-35 chr14 61382511 61382918 + 0.666667 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 61271 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 254.667-15 chr2 62864779 62865247 + 0.666667 NA intron (NM_001142615, intron 9 of 22) intron (NM_001142615, intron 9 of 22) 158116 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 156-84 chr8 33758209 33758726 + 0.666667 NA Intergenic Intergenic -158361 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 259.833-2 chr15 40609043 40609904 + 0.666667 NA intron (NM_144508, intron 5 of 25) intron (NM_144508, intron 5 of 25) 15224 NM_170589 57082 Hs.181855 NM_144508 ENSG00000137812 KNL1 AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105 kinetochore scaffold 1 protein-coding 220-10 chr18 8955352 8955898 + 0.666667 NA Intergenic Intergenic -147074 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 164.167-64 chr8 133329935 133330278 + 0.666667 NA Intergenic L1ME4b|LINE|L1 -32802 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 229.666 chr14 28476358 28477007 + 0.666667 NA Intergenic L2|LINE|L2 288637 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 141.167-24 chr14 59084732 59085068 + 0.666667 NA Intergenic MER21C|LTR|ERVL -103767 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 189.167-47 chr9 83019891 83020203 + 0.666667 NA intron (NM_152573, intron 3 of 16) L1ME2|LINE|L1 43095 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 139-4 chr10 114370679 114371010 + 0.666667 NA intron (NM_001351073, intron 1 of 19) intron (NM_001351073, intron 1 of 19) 33658 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 135.333-19 chr12 64377917 64378230 + 0.666667 NA intron (NM_001099676, intron 1 of 10) MIR|SINE|MIR 12685 NM_001170633 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 142-72 chr5 28087279 28087760 + 0.666667 NA Intergenic L2a|LINE|L2 200146 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 133.333-50 chr2 29642918 29643423 + 0.666667 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -167793 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 177.5-45 chr2 207137634 207138095 + 0.666667 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) -3727 NM_001270944 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 188.5-13 chr12 21517410 21517872 + 0.666667 NA 3' UTR (NM_016072, exon 5 of 5) 3' UTR (NM_016072, exon 5 of 5) -8655 NM_030572 80763 Hs.130692 NM_030572 ENSG00000134548 SPX C12orf39 spexin hormone protein-coding 184.667-21 chr15 69966339 69966829 + 0.666667 NA Intergenic Intergenic 112884 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 143.5-48 chr21 18953187 18953519 + 0.666667 NA Intergenic Intergenic -193541 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 115.667-33 chr14 67444687 67444898 + 0.666667 NA Intergenic AluSz|SINE|Alu -2862 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 124.333-103 chr8 121456835 121457320 + 0.666667 NA Intergenic LOR1a|LTR|ERV1 -182269 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 210.334-3 chr18 4050760 4051493 + 0.666667 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 88773 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 148-85 chr9 104434024 104434373 + 0.666667 NA Intergenic MIR|SINE|MIR -70065 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 167.667-80 chr6 123370868 123371419 + 0.666667 NA intron (NM_001251987, intron 19 of 20) L1ME3D|LINE|L1 -68461 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 124.667-54 chr18 12532086 12532481 + 0.666667 NA intron (NM_020148, intron 4 of 15) intron (NM_020148, intron 4 of 15) 99509 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 160.833-45 chr8 127932690 127932971 + 0.666667 NA intron (NR_003367, intron 2 of 8) intron (NR_003367, intron 2 of 8) 15893 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 118.333-22 chr12 39909918 39910234 + 0.666667 NA intron (NM_052885, intron 4 of 9) MIRc|SINE|MIR 196005 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 148.667-77 chr8 84041036 84041402 + 0.666667 NA Intergenic L1ME1|LINE|L1 -141568 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 147.5-29 chr14 66090330 66090593 + 0.666667 NA Intergenic HAL1|LINE|L1 -395910 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 205.5-41 chr7 70883173 70883688 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie -248714 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 275.333-2 chr1 59859954 59860550 + 0.666667 NA exon (NM_015888, exon 15 of 22) exon (NM_015888, exon 15 of 22) 45303 NM_015888 51361 Hs.378836 NM_015888 ENSG00000134709 HOOK1 HK1 hook microtubule tethering protein 1 protein-coding 135.167-57 chr20 35418046 35418352 + 0.666667 NA Intergenic L2|LINE|L2 -6057 NM_199487 55245 Hs.726290 NM_018244 ENSG00000101019 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 134-47 chr17 4005900 4006210 + 0.666667 NA 3' UTR (NM_015113, exon 55 of 55) 3' UTR (NM_015113, exon 55 of 55) 28952 NR_146884 105371496 Hs.579239 NR_146884 LINC01975 - long intergenic non-protein coding RNA 1975 ncRNA 138.833-22 chr15 42611058 42611376 + 0.666667 NA intron (NM_020759, intron 3 of 32) MER58A|DNA|hAT-Charlie 35611 NM_020759 57519 Hs.122061 NM_020759 ENSG00000159433 STARD9 KIF16A StAR related lipid transfer domain containing 9 protein-coding 124.667-87 chr4 105957288 105957511 + 0.666667 NA intron (NM_001184692, intron 8 of 10) L2a|LINE|L2 61928 NM_001184691 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 167-30 chr2 28722753 28723077 + 0.666667 NA intron (NR_145832, intron 1 of 1) AluSx3|SINE|Alu 13290 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 184.167-41 chr6 21612051 21612369 + 0.666667 NA Intergenic Intergenic 18459 NM_003107 6659 Hs.643910 NM_003107 ENSG00000124766 SOX4 EVI16 SRY-box transcription factor 4 protein-coding 153-16 chr12 79740327 79740670 + 0.666667 NA Intergenic Intergenic -49401 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 122.333-24 chr12 3456003 3456309 + 0.666667 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) -35047 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 157.333-75 chr8 142224650 142225056 + 0.666667 NA intron (NM_001366901, intron 13 of 13) intron (NM_001366901, intron 13 of 13) 26497 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 184.333-39 chr3 81277183 81277725 + 0.666667 NA Intergenic MIR|SINE|MIR 283586 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 121.667-84 chr6 56510508 56510892 + 0.666667 NA intron (NM_001144770, intron 65 of 94) intron (NM_001144770, intron 65 of 94) -116572 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 120-7 chr1 195025107 195025340 + 0.666667 NA Intergenic L1M4|LINE|L1 1063492 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 192-58 chrX 93604166 93604493 + 0.666667 NA Intergenic L1M5|LINE|L1 69249 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 137.333-33 chr16 25061782 25062122 + 0.666667 NA Intergenic L2|LINE|L2 -4935 NR_135196 283887 Hs.652665 NR_135196 ENSG00000262155 LINC02175 - long intergenic non-protein coding RNA 2175 ncRNA 193.167-29 chr5 73927455 73927979 + 0.666667 NA intron (NM_001080479, intron 36 of 36) intron (NM_001080479, intron 36 of 36) 114171 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 184.667-46 chr6 164844311 164844838 + 0.666667 NA Intergenic L1ME3A|LINE|L1 -22511 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 124.333-56 chr21 28115723 28116008 + 0.666667 NA TTS (NR_126012) TTS (NR_126012) 25462 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 170.5-29 chr2 12078280 12078656 + 0.666667 NA intron (NR_110196, intron 2 of 5) Charlie8|DNA|hAT-Charlie 71352 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 162.833-42 chr6 133565124 133565428 + 0.666667 NA intron (NR_109982, intron 5 of 8) intron (NR_109982, intron 5 of 8) -255871 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 151.667-3 chr1 165000028 165000604 + 0.666667 NA Intergenic L2c|LINE|L2 -225675 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 197.667-4 chr1 67194360 67194810 + 0.666667 NA intron (NM_144701, intron 4 of 10) intron (NM_144701, intron 4 of 10) 28131 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 154-29 chr16 9808738 9809239 + 0.666667 NA intron (NM_001134408, intron 10 of 13) L1ME3G|LINE|L1 -353483 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 158.667-98 chrX 45653077 45653408 + 0.666667 NA Intergenic L1PA13|LINE|L1 -77846 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 171.5-9 chr11 120333263 120333637 + 0.666667 NA 3' UTR (NM_001198670, exon 3 of 3) 3' UTR (NM_001198670, exon 3 of 3) -2963 NM_001198665 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 124.167-80 chr6 103304615 103304840 + 0.666667 NA Intergenic Intergenic 1554819 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 215-25 chr4 117661264 117661645 + 0.666667 NA intron (NR_125757, intron 3 of 3) intron (NR_125757, intron 3 of 3) -172947 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 293.5 chr1 163929069 163930033 + 0.666667 NA Intergenic Intergenic -506360 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 161.5-36 chr5 45694235 45694565 + 0.666667 NA intron (NM_021072, intron 1 of 7) intron (NM_021072, intron 1 of 7) 1980 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 202.167-20 chr2 181760322 181760856 + 0.666667 NA Intergenic Intergenic -79924 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 167.5-54 chr6 72697086 72697426 + 0.666667 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 66761 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 165.167-55 chr8 73340654 73341253 + 0.666667 NA intron (NR_125388, intron 3 of 5) intron (NR_125388, intron 3 of 5) 15508 NR_125388 101926926 Hs.640090 NR_125388 ENSG00000250295 RDH10-AS1 - RDH10 antisense RNA 1 ncRNA 139.667-25 chr14 51721111 51721427 + 0.666667 NA intron (NM_001042481, intron 12 of 14) intron (NM_001042481, intron 12 of 14) 3986 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 161.333-63 chr5 87522021 87522452 + 0.666667 NA Intergenic L1MEj|LINE|L1 -109203 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 157.333-67 chr6 136696369 136696738 + 0.666667 NA intron (NM_005923, intron 5 of 29) intron (NM_005923, intron 5 of 29) 67439 NR_125858 101928461 Hs.666518 NR_125858 LOC101928461 - uncharacterized LOC101928461 ncRNA 194.333-8 chr11 116733773 116734119 + 0.666667 NA Intergenic L2c|LINE|L2 39041 NM_032725 84811 Hs.437341 NM_032725 ENSG00000137656 BUD13 Cwc26|fSAP71 BUD13 homolog protein-coding 117.167-26 chr15 24934135 24934502 + 0.666667 NA intron (NM_001349456, intron 4 of 12) MER58B|DNA|hAT-Charlie -20575 NM_001349463 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 133.333-102 chr6 66206398 66206790 + 0.666667 NA Intergenic Intergenic 418715 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 198.667-26 chr19 28143149 28143565 + 0.666667 NA Intergenic Intergenic -349417 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 119 chr1 32839756 32840117 + 0.666667 NA intron (NR_135107, intron 5 of 6) AluSx3|SINE|Alu 14623 NR_135106 64766 Hs.440880 NM_022753 ENSG00000116497 S100PBP S100PBPR S100P binding protein protein-coding 137.333-5 chr1 159683847 159684142 + 0.666667 NA Intergenic Intergenic 30595 NM_001329057 1401 Hs.76452 NM_000567 ENSG00000132693 CRP PTX1 C-reactive protein protein-coding 188-43 chr5 23396905 23397439 + 0.666667 NA Intergenic MER31-int|LTR|ERV1 -110437 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 152.833-55 chr5 60387209 60387580 + 0.666667 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) -14731 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 128.833-37 chr18 3927906 3928264 + 0.666667 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -34268 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 186.833-28 chr2 156614438 156614847 + 0.666667 NA Intergenic Charlie2b|DNA|hAT-Charlie 178263 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 131.667-87 chr4 32288865 32289167 + 0.666667 NA Intergenic (TTTG)n|Simple_repeat|Simple_repeat -62022 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 133.167-50 chr5 40117229 40117456 + 0.666667 NA Intergenic MER4B-int|LTR|ERV1 65051 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 197 chr1 63176239 63176662 + 0.666667 NA intron (NR_038252, intron 6 of 11) Tigger1|DNA|TcMar-Tigger 140807 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 172.833-26 chr2 78536143 78536468 + 0.666667 NA Intergenic LTR81B|LTR|Gypsy -9226 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 184.5-33 chr3 115730595 115731001 + 0.666667 NA Intergenic L1PA10|LINE|L1 107288 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 232.333-35 chr7 146556049 146556472 + 0.666667 NA Intergenic MIRb|SINE|MIR -218011 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 292-8 chr20 33096574 33097274 + 0.666667 NA intron (NM_182519, intron 10 of 15) intron (NM_182519, intron 10 of 15) 15412 NM_182519 149954 Hs.38961 NM_182519 ENSG00000186191 BPIFB4 C20orf186|LPLUNC4|RY2G5|dJ726C3.5 BPI fold containing family B member 4 protein-coding 121.667-55 chr2 133395627 133395990 + 0.666667 NA intron (NM_207481, intron 3 of 17) AluJr|SINE|Alu 129613 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 158.667-28 chr15 57103274 57103698 + 0.666667 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -115944 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 158-3 chr1 66217339 66217727 + 0.666667 NA intron (NM_001037340, intron 1 of 14) LTR33|LTR|ERVL -114575 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 175-10 chr10 50975092 50975661 + 0.666667 NA Intergenic MLT1H|LTR|ERVL-MaLR -15512 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 186.667 chr1 9676262 9676634 + 0.666667 NA intron (NR_126367, intron 1 of 1) intron (NR_126367, intron 1 of 1) 11126 NR_126368 101929074 Hs.661762 NR_126366 ENSG00000231789 PIK3CD-AS2 - PIK3CD antisense RNA 2 ncRNA 218.333-6 chr10 94027658 94028553 + 0.666667 NA intron (NM_001288989, intron 1 of 32) MIR|SINE|MIR 34174 NM_001288989 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 124.333-81 chr5 58662251 58662479 + 0.666667 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 79290 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 180.833-4 chr10 31991242 31991735 + 0.666667 NA Intergenic MLT1G1|LTR|ERVL-MaLR -62612 NM_001270695 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 118.167-24 chr16 50357444 50357857 + 0.666667 NA intron (NM_013263, intron 2 of 16) intron (NM_013263, intron 2 of 16) 11338 NM_001173984 29117 Hs.437894 NM_013263 ENSG00000166164 BRD7 BP75|CELTIX1|NAG4 bromodomain containing 7 protein-coding 211.5-16 chr20 4457074 4457484 + 0.666667 NA Intergenic L1PA13|LINE|L1 -207992 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 162-36 chr2 179975325 179975741 + 0.666667 NA intron (NM_020943, intron 6 of 19) L1MA8|LINE|L1 31764 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 134-112 chr9 125669653 125669885 + 0.666667 NA intron (NM_001006621, intron 1 of 9) (AATTAA)n|Simple_repeat|Simple_repeat 37439 NM_001006617 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g MAPK associated protein 1 protein-coding 161-66 chr7 8467290 8467566 + 0.666667 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 33819 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 335.167-3 chr2 40576971 40577829 + 0.666667 NA Intergenic L1MEd|LINE|L1 -64965 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 154.167-7 chr10 53837064 53837333 + 0.666667 NA intron (NM_001354411, intron 30 of 34) L1MCc|LINE|L1 -649032 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 255.667-19 chr6 101424928 101425404 + 0.666667 NA intron (NM_001166247, intron 1 of 16) L1PA4|LINE|L1 26181 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 180.667-61 chr6 23065858 23066234 + 0.666667 NA Intergenic Intergenic -348122 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 146.833-15 chr14 67530943 67531265 + 0.666667 NA intron (NM_001348546, intron 1 of 2) intron (NM_001348546, intron 1 of 2) -2186 NM_020715 57475 Hs.594236 NM_020715 ENSG00000054690 PLEKHH1 - pleckstrin homology, MyTH4 and FERM domain containing H1 protein-coding 199.333-19 chr18 13575628 13576116 + 0.666667 NA intron (NM_181482, intron 4 of 5) L1PB1|LINE|L1 -35242 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 119.667-61 chr3 48713301 48713748 + 0.666667 NA intron (NM_016291, intron 1 of 5) intron (NM_016291, intron 1 of 5) 3697 NR_027438 51447 Hs.595983 NM_016291 ENSG00000068745 IP6K2 IHPK2|InsP6K2|PIUS inositol hexakisphosphate kinase 2 protein-coding 121.667-82 chr6 37803748 37803955 + 0.666667 NA Intergenic L1MB7|LINE|L1 -15876 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 195.667-19 chr18 3625651 3626113 + 0.666667 NA intron (NM_001242761, intron 7 of 11) intron (NM_001242761, intron 7 of 11) 22145 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 150-61 chr4 129104392 129104779 + 0.666667 NA intron (NM_001099783, intron 2 of 5) L2c|LINE|L2 8433 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 247.333-2 chr11 13181398 13182056 + 0.666667 NA Intergenic Charlie10|DNA|hAT-Charlie -94925 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 230.667-29 chr7 35746426 35746927 + 0.666667 NA Intergenic Intergenic 30239 NR_108082 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 175-29 chr2 14732684 14733135 + 0.666667 NA Intergenic Intergenic 100192 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 175.5-44 chr3 138511560 138512065 + 0.666667 NA intron (NM_001320599, intron 11 of 17) intron (NM_001320599, intron 11 of 17) 77196 NM_001322834 83850 Hs.477711 NM_031913 ENSG00000158220 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin 3 protein-coding 149.667-54 chr4 19627146 19627374 + 0.666667 NA Intergenic Intergenic -624645 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 203-27 chr3 33641684 33642254 + 0.666667 NA intron (NM_015097, intron 8 of 38) intron (NM_015097, intron 8 of 38) 17710 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 205.667 chr1 78262330 78262770 + 0.666667 NA intron (NR_027310, intron 3 of 5) L1PA10|LINE|L1 32951 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 170.334-5 chr2 183130881 183131389 + 0.666667 NA intron (NM_001287585, intron 4 of 9) AluJo|SINE|Alu 6692 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 164.833-49 chr8 63914729 63915100 + 0.666667 NA intron (NR_125826, intron 4 of 4) L1ME3Cz|LINE|L1 145484 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 115.167-81 chr5 19133309 19133486 + 0.666667 NA Intergenic L1P3|LINE|L1 752875 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 197.333-26 chr2 55457226 55457605 + 0.666667 NA Intergenic Intergenic -37559 NM_018084 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 221-39 chr9 7994625 7995278 + 0.666667 NA Intergenic Intergenic -195173 NM_001318059 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 118.333-63 chr2 203105756 203105989 + 0.666667 NA intron (NM_001114132, intron 11 of 54) intron (NM_001114132, intron 11 of 54) 90993 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 134-75 chr3 162908245 162908681 + 0.666667 NA Intergenic Intergenic 394838 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 133.333-98 chr5 98483458 98483888 + 0.666667 NA Intergenic MIRc|SINE|MIR -284959 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 116.833-21 chr17 69257502 69257842 + 0.666667 NA intron (NM_018672, intron 27 of 37) intron (NM_018672, intron 27 of 37) -12857 NM_080282 10349 Hs.25377 NM_080282 ENSG00000154263 ABCA10 EST698739 ATP binding cassette subfamily A member 10 protein-coding 128.333-11 chr1 209790015 209790427 + 0.666667 NA intron (NM_006147, intron 7 of 8) intron (NM_006147, intron 7 of 8) -5662 NM_152485 148304 Hs.497642 NM_152485 ENSG00000162757 C1orf74 URLC4 chromosome 1 open reading frame 74 protein-coding 173.833-8 chr10 93022138 93022603 + 0.666667 NA intron (NM_001319195, intron 20 of 21) intron (NM_001319195, intron 20 of 21) -38428 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 126.5-70 chr5 33119811 33120071 + 0.666667 NA Intergenic L1MC4|LINE|L1 -109794 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 176.667-78 chr8 127033530 127033860 + 0.666667 NA Intergenic L1MC1|LINE|L1 20541 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 125.333-69 chr2 220917039 220917361 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR 655104 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 181.667-34 chr20 51422001 51422443 + 0.666667 NA intron (NM_012340, intron 9 of 10) intron (NM_012340, intron 9 of 10) 30755 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 196.333-42 chr5 108967860 108968356 + 0.666667 NA intron (NR_146155, intron 13 of 19) AluSz|SINE|Alu 43502 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 187.666-3 chr8 76745196 76745750 + 0.666667 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -62198 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 192.667-45 chr5 154212409 154212804 + 0.666667 NA intron (NM_198321, intron 1 of 11) MIRc|SINE|MIR 21873 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 132.333-93 chr6 105512534 105512830 + 0.666667 NA Intergenic Intergenic -109600 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 138.667-94 chr7 49077788 49078343 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR 153518 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 121.833-56 chr5 15701784 15702229 + 0.666667 NA intron (NM_001278317, intron 2 of 3) AluSx1|SINE|Alu -87004 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 118.833-12 chr11 45831164 45831445 + 0.666667 NA Intergenic L1MB4|LINE|L1 -15814 NM_001127457 1408 Hs.532491 NM_021117 ENSG00000121671 CRY2 HCRY2|PHLL2 cryptochrome circadian regulator 2 protein-coding 170.167-25 chr18 6047109 6047511 + 0.666667 NA intron (NM_173464, intron 16 of 19) L1PA16|LINE|L1 -151356 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 174.5-55 chr8 123568725 123569234 + 0.666667 NA Intergenic Intergenic -27773 NM_001242463 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 150.667-10 chr1 189452157 189452410 + 0.666667 NA Intergenic AluJr4|SINE|Alu 1023727 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 226.333-6 chr14 24906832 24907410 + 0.666667 NA intron (NM_001351943, intron 3 of 6) L1MA4|LINE|L1 141879 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 194.167 chr1 34314729 34315298 + 0.666667 NA Intergenic L1MC|LINE|L1 138106 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 249.167-13 chr8 127040357 127040944 + 0.666667 NA Intergenic Intergenic 27496 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 183.667-26 chr15 36372135 36372515 + 0.666667 NA Intergenic Intergenic -207301 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 159-6 chr1 109493336 109493862 + 0.666667 NA promoter-TSS (NM_001134402) promoter-TSS (NM_001134402) -437 NM_001134402 284613 Hs.514682 NM_182580 ENSG00000174151 CYB561D1 - cytochrome b561 family member D1 protein-coding 155.833-8 chr10 49507390 49507800 + 0.666667 NA intron (NM_001346440, intron 5 of 20) intron (NM_001346440, intron 5 of 20) 16686 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 175.167-41 chr6 63417456 63418018 + 0.666667 NA Intergenic Intergenic -97754 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 116.5-85 chr7 89614180 89614381 + 0.666667 NA Intergenic Intergenic -505120 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 219-14 chr2 108104892 108105425 + 0.666667 NA Intergenic AluSz6|SINE|Alu -52403 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 184.5-53 chr8 121158083 121158455 + 0.666667 NA Intergenic Intergenic -346223 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 244.667-4 chr11 79170426 79170906 + 0.666667 NA intron (NM_001098816, intron 3 of 33) MLT1C|LTR|ERVL-MaLR 231443 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 202.667-28 chr21 28690769 28691317 + 0.666667 NA Intergenic L1MC5|LINE|L1 151725 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 137.833-32 chr5 5506489 5506967 + 0.666667 NA Intergenic L1ME2|LINE|L1 84051 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 175.167-36 chr4 81796946 81797343 + 0.666667 NA Intergenic L1MA8|LINE|L1 -325237 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 187 chr1 57907059 57907550 + 0.666667 NA intron (NM_021080, intron 1 of 16) intron (NM_021080, intron 1 of 16) 46723 NR_104364 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 135.833-46 chr3 28675963 28676404 + 0.666667 NA intron (NR_038840, intron 2 of 4) L2a|LINE|L2 100905 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 146.167-49 chr5 3629878 3630117 + 0.666667 NA Intergenic Intergenic 34165 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 131.667-113 chr6 116431355 116431760 + 0.666667 NA intron (NR_136524, intron 4 of 4) intron (NR_136524, intron 4 of 4) -29818 NM_001010919 441168 Hs.381220 NM_001010919 ENSG00000188820 CALHM6 C6orf187|FAM26F|INAM|dJ93H18.5 calcium homeostasis modulator family member 6 protein-coding 147.667-23 chr15 83382013 83382401 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -65021 NR_125370 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 114-24 chr11 43919068 43919368 + 0.666667 NA intron (NM_139178, intron 9 of 9) intron (NM_139178, intron 9 of 9) 1726 NR_038907 100507300 Hs.664588 NR_038907 ENSG00000244926 ALKBH3-AS1 - ALKBH3 antisense RNA 1 ncRNA 178.5-68 chr7 39029657 39030190 + 0.666667 NA intron (NM_007252, intron 2 of 10) L1M5|LINE|L1 -16356 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 248.167-16 chr3 26666454 26667026 + 0.666667 NA intron (NM_001317810, intron 2 of 2) L1MD3|LINE|L1 -27817 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 223.333-32 chr5 39292378 39292791 + 0.666667 NA intron (NM_001737, intron 9 of 10) L1MEg|LINE|L1 -21935 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 139.333-42 chr16 54691275 54691636 + 0.666667 NA Intergenic L1MC5|LINE|L1 156778 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 129.333-111 chr9 137959030 137959275 + 0.666667 NA intron (NM_001243812, intron 10 of 45) AluSq2|SINE|Alu -12092 NR_132978 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 193.333-6 chr1 239184472 239184993 + 0.666667 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -201836 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 125.5-91 chrX 133704209 133704410 + 0.666667 NA intron (NM_001164617, intron 3 of 8) intron (NM_001164617, intron 3 of 8) -193134 NR_148713 110806308 Hs.658628 NR_148713 ENSG00000286096 GPC3-AS1 - GPC3 antisense RNA 1 ncRNA 188-60 chr7 66219250 66219742 + 0.666667 NA intron (NM_003596, intron 1 of 5) intron (NM_003596, intron 1 of 5) 14162 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 188-7 chr10 29721797 29722221 + 0.666667 NA intron (NM_001323599, intron 1 of 38) AluSz6|SINE|Alu 13792 NM_003174 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 269.5-8 chr15 87598286 87598728 + 0.666667 NA Intergenic L1MC5a|LINE|L1 21578 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 136-5 chr1 183571640 183571963 + 0.666667 NA intron (NM_001190789, intron 3 of 12) L2b|LINE|L2 18803 NM_001190789 4688 Hs.587558 NM_000433 ENSG00000116701 NCF2 NCF-2|NOXA2|P67-PHOX|P67PHOX neutrophil cytosolic factor 2 protein-coding 233.167-5 chr11 101341706 101342299 + 0.666667 NA Intergenic Intergenic 177903 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 229-15 chr16 56827664 56828142 + 0.666667 NA intron (NM_014669, intron 8 of 21) AluSz|SINE|Alu -30615 NR_029680 406930 NR_029680 ENSG00000207649 MIR138-2 MIRN138-2|mir-138-2 microRNA 138-2 ncRNA 125-38 chr18 47075529 47075784 + 0.666667 NA intron (NM_001367621, intron 12 of 15) intron (NM_001367621, intron 12 of 15) -40039 NM_016427 51224 Hs.375035 NM_016427 ENSG00000206181 ELOA2 HsT832|TCEB3B|TCEB3L elongin A2 protein-coding 156.667-78 chr7 26364897 26365292 + 0.666667 NA exon (NM_001318198, exon 6 of 8) exon (NM_001318198, exon 6 of 8) 769 NM_001199838 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 119.667-78 chr5 57584860 57585215 + 0.666667 NA intron (NR_120607, intron 4 of 5) Charlie1|DNA|hAT-Charlie 14695 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 126.667-38 chr2 56406723 56407100 + 0.666667 NA Intergenic Intergenic -221141 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 114.5-27 chr12 85604071 85604259 + 0.666667 NA Intergenic Intergenic 232244 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 215-4 chr1 228854664 228855153 + 0.666667 NA Intergenic Intergenic 119429 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 147.667-33 chr2 144563614 144563984 + 0.666667 NA intron (NR_110570, intron 1 of 2) intron (NR_110570, intron 1 of 2) -39355 NR_136320 105373656 Hs.734683 NR_136320 LOC105373656 - uncharacterized LOC105373656 ncRNA 142-53 chr20 40317467 40317772 + 0.666667 NA Intergenic Intergenic 313158 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 296.667-10 chr21 28947309 28947889 + 0.666667 NA exon (NM_001320766, exon 18 of 29) exon (NM_001320766, exon 18 of 29) 45278 NM_015565 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 142.333-48 chr2 31528001 31528249 + 0.666667 NA intron (NM_000348, intron 4 of 4) intron (NM_000348, intron 4 of 4) 52813 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 240.333-25 chr6 145008843 145009456 + 0.666667 NA Intergenic L1MB8|LINE|L1 603494 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 137.667-25 chr14 19951717 19952052 + 0.666667 NA Intergenic Intergenic 16276 NM_001004063 79544 Hs.554584 NM_001004063 ENSG00000155249 OR4K1 OR14-19 olfactory receptor family 4 subfamily K member 1 protein-coding 138-18 chr11 22859304 22859663 + 0.666667 NA exon (NM_001195637, exon 2 of 4) exon (NM_001195637, exon 2 of 4) 991 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 116-71 chr5 31824041 31824265 + 0.666667 NA intron (NM_178140, intron 2 of 24) MER34|LTR|ERV1 112006 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 155.5-57 chr8 86648626 86649012 + 0.666667 NA intron (NM_019098, intron 7 of 17) L1PB|LINE|L1 94856 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 123.667-88 chr5 102438078 102438345 + 0.666667 NA intron (NM_173488, intron 7 of 13) L1ME3Cz|LINE|L1 60790 NM_001289002 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 202.333-18 chr17 76746573 76747112 + 0.666667 NA intron (NM_001353019, intron 8 of 13) Tigger1|DNA|TcMar-Tigger 9341 NM_001242533 79157 Hs.73965 NM_024311 ENSG00000092931 MFSD11 ET major facilitator superfamily domain containing 11 protein-coding 170.5-40 chr20 17257944 17258433 + 0.666667 NA intron (NM_001201529, intron 1 of 10) L1MB7|LINE|L1 31148 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 116-90 chr7 81613530 81613857 + 0.666667 NA intron (NR_126026, intron 2 of 8) Tigger6a|DNA|TcMar-Tigger 12523 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 155-79 chr9 69529769 69530227 + 0.666667 NA intron (NM_001163, intron 1 of 12) L1PB4|LINE|L1 142373 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 115.667-96 chr5 58924794 58925098 + 0.666667 NA Intergenic Intergenic 74952 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 170.667-23 chr16 54375449 54375835 + 0.666667 NA Intergenic Intergenic -4943 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 306.833-2 chr2 64303156 64304022 + 0.666667 NA Intergenic Ricksha_c|DNA|MULE-MuDR -37170 NR_039632 100616265 NR_039632 ENSG00000283222 MIR4433A MIR4433|hsa-mir-4433a microRNA 4433a ncRNA 176.333-53 chr6 120566464 120566817 + 0.666667 NA Intergenic L1ME1|LINE|L1 551461 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 214.333-26 chr20 18377370 18377775 + 0.666667 NA Intergenic Intergenic -1477 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 173.833-54 chr7 34596478 34597141 + 0.666667 NA intron (NR_033664, intron 2 of 4) intron (NR_033664, intron 2 of 4) -61409 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 126.833-15 chr10 98157354 98157624 + 0.666667 NA 5' UTR (NM_001351011, exon 3 of 11) 5' UTR (NM_001351011, exon 3 of 11) 22832 NM_001256619 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 170.833-42 chr6 64358282 64358605 + 0.666667 NA intron (NM_001292009, intron 29 of 43) intron (NM_001292009, intron 29 of 43) 551607 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 123-62 chr3 2193594 2194018 + 0.666667 NA intron (NM_175607, intron 2 of 24) Tigger3a|DNA|TcMar-Tigger -45023 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 216.333-27 chr21 30451251 30451703 + 0.666667 NA Intergenic Intergenic 11198 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 214.667-18 chr2 31782977 31783624 + 0.666667 NA Intergenic MER11A|LTR|ERVK 20680 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 117.833-57 chr4 59104291 59104616 + 0.666667 NA Intergenic Intergenic 90880 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 197.333-37 chr3 65032169 65032554 + 0.666667 NA Intergenic Intergenic -344361 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 185-10 chr12 18462014 18462490 + 0.666667 NA intron (NM_001288774, intron 18 of 32) intron (NM_001288774, intron 18 of 32) 200712 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 138.167-60 chr5 55272973 55273238 + 0.666667 NA intron (NR_144323, intron 17 of 26) intron (NR_144323, intron 17 of 26) 34589 NR_144323 54505 Hs.593268 NM_019030 ENSG00000067248 DHX29 DDX29 DExH-box helicase 29 protein-coding 124.333-85 chr5 89141983 89142289 + 0.666667 NA intron (NR_136221, intron 4 of 6) A-rich|Low_complexity|Low_complexity -238031 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 198.667-7 chr10 27168060 27168530 + 0.666667 NA intron (NM_001320757, intron 7 of 12) intron (NM_001320757, intron 7 of 12) 13471 NM_001172303 84930 Hs.276905 NM_032844 ENSG00000120539 MASTL GREATWALL|GW|GWL|MAST-L|THC2 microtubule associated serine/threonine kinase like protein-coding 170.667-29 chr17 59785162 59785549 + 0.666667 NA intron (NM_001329400, intron 5 of 9) A-rich|Low_complexity|Low_complexity -55911 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 132-7 chr1 170665831 170666094 + 0.666667 NA intron (NM_022716, intron 1 of 3) intron (NM_022716, intron 1 of 3) 1831 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 153.333-21 chr15 54179694 54179948 + 0.666667 NA intron (NM_001329919, intron 4 of 31) L1MEg|LINE|L1 167173 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 125.167-24 chr14 50392883 50393104 + 0.666667 NA intron (NM_001282236, intron 2 of 8) intron (NM_001282236, intron 2 of 8) 3888 NM_001367065 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 191.667-59 chr9 90464414 90464747 + 0.666667 NA intron (NR_034157, intron 5 of 5) intron (NR_034157, intron 5 of 5) -31091 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 135.333-37 chr2 12351085 12351446 + 0.666667 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 152135 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 211-12 chr11 60991891 60992207 + 0.666667 NA intron (NM_001254751, intron 1 of 10) AluJo|SINE|Alu 20369 NM_006725 923 Hs.744366 NM_006725 ENSG00000013725 CD6 TP120 CD6 molecule protein-coding 232.5-17 chr18 10764484 10764887 + 0.666667 NA intron (NM_022068, intron 19 of 51) intron (NM_022068, intron 19 of 51) -5036 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 125.667-124 chr8 144008022 144008304 + 0.666667 NA Intergenic Intergenic -4117 NM_198572 375686 Hs.97726 NM_198572 ENSG00000186583 SPATC1 SPATA15 spermatogenesis and centriole associated 1 protein-coding 138.667-14 chr11 5174617 5174995 + 0.666667 NA Intergenic L1MB4|LINE|L1 3905 NM_001348257 283110 NM_001348257 OR52Z1 OR52Z1P olfactory receptor family 52 subfamily Z member 1 (gene/pseudogene) protein-coding 124-12 chr10 33560077 33560427 + 0.666667 NA Intergenic MIRb|SINE|MIR 212428 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 201-3 chr1 44107973 44108377 + 0.666667 NA Intergenic Intergenic -10646 NM_173484 128209 Hs.567674 NM_173484 ENSG00000171872 KLF17 ZNF393|Zfp393 Kruppel like factor 17 protein-coding 146.333-12 chr10 113530106 113530474 + 0.666667 NA Intergenic AluJb|SINE|Alu -20541 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 121-75 chr6 1836488 1836776 + 0.666667 NA intron (NM_001253846, intron 7 of 10) intron (NM_001253846, intron 7 of 10) 226717 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 160.333-56 chr7 70313432 70313740 + 0.666667 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 715111 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 215-33 chr5 138057140 138057767 + 0.666667 NA Intergenic AluJb|SINE|Alu -24340 NM_001101801 51306 Hs.567453 NM_016603 ENSG00000031003 FAM13B ARHGAP49|C5orf5|FAM13B1|KHCHP|N61 family with sequence similarity 13 member B protein-coding 149-56 chr3 133439783 133440138 + 0.666667 NA intron (NR_135276, intron 4 of 4) intron (NR_135276, intron 4 of 4) 15816 NR_135278 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 143-10 chr10 24224272 24224628 + 0.666667 NA intron (NM_019590, intron 2 of 20) AluSz6|SINE|Alu 15312 NM_019590 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 130.667-35 chr17 75695040 75695346 + 0.666667 NA intron (NR_126037, intron 4 of 8) MER20|DNA|hAT-Charlie -26266 NM_001321123 3691 Hs.632226 NM_000213 ENSG00000132470 ITGB4 CD104|GP150 integrin subunit beta 4 protein-coding 175.667-25 chr18 43575211 43575550 + 0.666667 NA Intergenic L1MA8|LINE|L1 -297890 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 126.667-106 chr8 123527074 123527444 + 0.666667 NA intron (NM_148177, intron 1 of 5) intron (NM_148177, intron 1 of 5) 4884 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 117.333-45 chr2 43876318 43876530 + 0.666667 NA intron (NM_001357321, intron 11 of 12) intron (NM_001357321, intron 11 of 12) 37453 NM_022437 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 179.5-21 chr20 45815386 45815837 + 0.666667 NA exon (NM_007019, exon 4 of 6) exon (NM_007019, exon 4 of 6) 2616 NM_181801 11065 Hs.93002 NM_007019 ENSG00000175063 UBE2C UBCH10|dJ447F3.2 ubiquitin conjugating enzyme E2 C protein-coding 164.667-6 chr10 8201054 8201481 + 0.666667 NA Intergenic AluSq2|SINE|Alu 67038 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 175.667-14 chr11 22013296 22013559 + 0.666667 NA Intergenic Intergenic -179658 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 151-33 chr2 17639589 17639838 + 0.666667 NA intron (NM_001366805, intron 2 of 2) MIRb|SINE|MIR 99017 NM_001366806 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 215.5-16 chr16 59768742 59769090 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR -13725 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 138.333-88 chr5 52045121 52045598 + 0.666667 NA Intergenic Intergenic 37328 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 269.167-3 chr11 110261553 110262111 + 0.666667 NA intron (NM_001260494, intron 3 of 11) intron (NM_001260494, intron 3 of 11) 34880 NM_001260494 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 163.5-13 chr11 83251107 83251404 + 0.666667 NA intron (NM_001300972, intron 11 of 11) intron (NM_001300972, intron 11 of 11) 35152 NM_001286118 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 223-25 chr5 32034979 32035411 + 0.666667 NA intron (NM_178140, intron 6 of 24) intron (NM_178140, intron 6 of 24) -99036 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 126.167-91 chr8 118050874 118051199 + 0.666667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 60783 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 138.833-29 chr17 75541013 75541240 + 0.666667 NA intron (NM_001015002, intron 1 of 9) intron (NM_001015002, intron 1 of 9) 15424 NM_001015002 3993 Hs.514477 NM_004524 ENSG00000073350 LLGL2 HGL|Hugl-2|LGL2 LLGL scribble cell polarity complex component 2 protein-coding 168.5-15 chr13 38592480 38592907 + 0.666667 NA intron (NR_126377, intron 2 of 2) intron (NR_126377, intron 2 of 2) 24969 NR_046999 100874147 Hs.555371 NR_046999 LINC00366 - long intergenic non-protein coding RNA 366 ncRNA 113.5-49 chr2 63107638 63107879 + 0.666667 NA Intergenic Intergenic 11784 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 167.667-73 chr5 79437676 79438145 + 0.666667 NA intron (NM_004272, intron 5 of 8) AluJr|SINE|Alu 75926 NM_001277078 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 121-14 chr11 37965158 37965389 + 0.666667 NA Intergenic L1M7|LINE|L1 26672 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 123.5 chr1 54246672 54247046 + 0.666667 NA intron (NM_001009955, intron 8 of 16) intron (NM_001009955, intron 8 of 16) 10416 NR_103541 619518 Hs.591438 NM_001034847 ENSG00000198711 SSBP3-AS1 C1orf191|MST128|MSTP128 SSBP3 antisense RNA 1 ncRNA 147.833-47 chr3 144437188 144437472 + 0.666667 NA Intergenic L1PBa|LINE|L1 464249 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 167-52 chr6 45934982 45935336 + 0.666667 NA intron (NR_045673, intron 1 of 4) intron (NR_045673, intron 1 of 4) 2438 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 176.667-62 chr5 3257575 3257959 + 0.666667 NA Intergenic Intergenic 79932 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 156.167-24 chr14 63525964 63526333 + 0.666667 NA intron (NM_001354926, intron 2 of 2) AluSx1|SINE|Alu -16636 NR_158218 112268140 Hs.632347 NR_158218 LOC112268140 - loricrin-like ncRNA 139-14 chr14 41269187 41269521 + 0.666667 NA Intergenic MER66-int|LTR|ERV1 314643 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 213.333-36 chr5 102445341 102445748 + 0.666667 NA intron (NM_173488, intron 6 of 13) L1PA15|LINE|L1 53457 NM_001289002 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 217-38 chr9 94677308 94677811 + 0.666667 NA Intergenic AluSg4|SINE|Alu -37310 NM_001127628 2203 Hs.494496 NM_000507 ENSG00000165140 FBP1 FBP fructose-bisphosphatase 1 protein-coding 179-31 chr22 27715051 27715378 + 0.666667 NA Intergenic Intergenic 86542 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 165.333-42 chr4 70979091 70979531 + 0.666667 NA intron (NM_173468, intron 5 of 5) intron (NM_173468, intron 5 of 5) -14338 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 128-56 chr2 224304684 224304944 + 0.666667 NA Intergenic L1MC5|LINE|L1 97180 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 178-4 chr10 52059057 52059468 + 0.666667 NA intron (NM_001098512, intron 6 of 17) L1ME1|LINE|L1 254866 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 178-2 chr1 99664822 99665417 + 0.666667 NA intron (NM_017734, intron 2 of 7) intron (NM_017734, intron 2 of 7) 19006 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 181.167-3 chr10 45652226 45652569 + 0.666667 NA intron (NM_174890, intron 3 of 9) MIR3|SINE|MIR 20335 NM_001282905 93550 Hs.89029 NM_174890 ENSG00000172671 ZFAND4 ANUBL1 zinc finger AN1-type containing 4 protein-coding 174.333-30 chr2 117068551 117068878 + 0.666667 NA Intergenic MER57D|LTR|ERV1 -745977 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 113.5-10 chr10 6458804 6459196 + 0.666667 NA intron (NM_001282644, intron 14 of 17) intron (NM_001282644, intron 14 of 17) 108684 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 201.333-24 chr20 53025968 53026740 + 0.666667 NA intron (NM_173485, intron 1 of 2) AluSx3|SINE|Alu 53996 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 294.333-11 chr4 30421644 30422417 + 0.666667 NA Intergenic Intergenic -298339 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 133.667-8 chr1 115872399 115872976 + 0.666667 NA Intergenic L3|LINE|CR1 -31561 NM_005599 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 120-79 chr4 30635467 30635680 + 0.666667 NA Intergenic AluSx|SINE|Alu -84796 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 123-52 chr2 212526801 212527071 + 0.666667 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 11692 NM_001042599 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 132.333-105 chr8 85266876 85267128 + 0.666667 NA intron (NM_198584, intron 4 of 6) intron (NM_198584, intron 4 of 6) 21544 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 171-15 chr15 69607500 69608130 + 0.666667 NA intron (NR_126438, intron 1 of 3) LTR33|LTR|ERVL 15615 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 165.167-24 chr2 112215648 112216038 + 0.666667 NA 3' UTR (NM_032494, exon 9 of 9) 3' UTR (NM_032494, exon 9 of 9) 39199 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 119.667-60 chr3 43551644 43551897 + 0.666667 NA intron (NM_001346463, intron 10 of 12) L1MDa|LINE|L1 70156 NM_001346466 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 149-9 chr1 87020386 87020752 + 0.666667 NA intron (NM_012262, intron 1 of 6) MLT1B|LTR|ERVL-MaLR 105934 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 245.667-25 chr3 81088653 81089273 + 0.666667 NA intron (NR_132411, intron 1 of 1) intron (NR_132411, intron 1 of 1) 95095 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 171.667-90 chr9 129295084 129295505 + 0.666667 NA Intergenic L1MDa|LINE|L1 12878 NR_121587 101929331 Hs.522428 NR_121587 ENSG00000224307 LOC101929331 - uncharacterized LOC101929331 ncRNA 158.667-55 chr3 6004369 6004748 + 0.666667 NA Intergenic L1ME3E|LINE|L1 -754303 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 265.667-17 chr5 71929973 71930484 + 0.666667 NA Intergenic MER34C_|LTR|ERV1 -177247 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 125.667-78 chr3 96439075 96439417 + 0.666667 NA Intergenic MIR|SINE|MIR 79282 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 126.333-103 chr7 69132365 69132807 + 0.666667 NA Intergenic Intergenic 465038 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 193.167-3 chr1 152212741 152213116 + 0.666667 NA 3' UTR (NM_001009931, exon 3 of 3) 3' UTR (NM_001009931, exon 3 of 3) 11268 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 202-40 chr7 33831330 33831757 + 0.666667 NA Intergenic Intergenic -73372 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 160.5-38 chr4 43934068 43934561 + 0.666667 NA Intergenic Intergenic -82547 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 142.333-83 chr5 91920557 91920805 + 0.666667 NA Intergenic L1M5|LINE|L1 -537364 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 137-44 chr18 12971238 12971593 + 0.666667 NA intron (NM_031216, intron 5 of 8) intron (NM_031216, intron 5 of 8) -19947 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 170-52 chr3 99456311 99456621 + 0.666667 NA Intergenic L1M1|LINE|L1 -182128 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 188.5-17 chr14 81049759 81050111 + 0.666667 NA intron (NM_001142626, intron 1 of 8) THE1D|LTR|ERVL-MaLR 94314 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 178.667-16 chr14 65390107 65390519 + 0.666667 NA Intergenic AluSc|SINE|Alu -20279 NM_004480 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 224.667-34 chr9 71933368 71934181 + 0.666667 NA intron (NM_001365055, intron 2 of 4) LTR39|LTR|ERV1 22135 NR_157408 138241 Hs.534190 NM_182505 ENSG00000155621 C9orf85 - chromosome 9 open reading frame 85 protein-coding 159.667-19 chr10 63937748 63938000 + 0.666667 NA Intergenic Intergenic -415984 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 143.333-89 chr8 121402851 121403110 + 0.666667 NA Intergenic MIR|SINE|MIR -236366 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 114-66 chr3 52590869 52591076 + 0.666667 NA intron (NM_001366074, intron 20 of 30) L1PA13|LINE|L1 54367 NM_001124767 440957 Hs.660577 NM_001124767 ENSG00000168273 SMIM4 C3orf78 small integral membrane protein 4 protein-coding 152.833-59 chr6 55304902 55305251 + 0.666667 NA Intergenic L2a|LINE|L2 -22393 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 167.167-13 chr10 78147493 78147894 + 0.666667 NA Intergenic MER103C|DNA|hAT-Charlie -100932 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 160.667-51 chr3 41680235 41680555 + 0.666667 NA intron (NR_136342, intron 27 of 34) intron (NR_136342, intron 27 of 34) 281708 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 214-6 chr10 109792037 109792509 + 0.666667 NA Intergenic THE1A|LTR|ERVL-MaLR 130973 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 116.333-81 chr5 43926633 43926920 + 0.666667 NA Intergenic L1MEc|LINE|L1 -323546 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 160.333-9 chr11 38700969 38701320 + 0.666667 NA Intergenic Intergenic 52286 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 169.333-33 chr2 40448600 40448968 + 0.666667 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) 2900 NM_001351485 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 137.667-103 chrX 147576191 147576477 + 0.666667 NA Intergenic L1MA2|LINE|L1 -291606 NR_030239 574517 NR_030239 ENSG00000207866 MIR514A2 MIR514-2|MIRN514-2|hsa-mir-514a-2 microRNA 514a-2 ncRNA 145.667-18 chr11 86616614 86616994 + 0.666667 NA intron (NM_001014811, intron 1 of 13) L1MD3|LINE|L1 55394 NR_147831 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 115.667-65 chr20 36808634 36808933 + 0.666667 NA intron (NM_199181, intron 7 of 14) intron (NM_199181, intron 7 of 14) -35020 NM_001145317 79980 Hs.632268 NM_024918 ENSG00000149636 DSN1 C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3 DSN1 component of MIS12 kinetochore complex protein-coding 225.333-12 chr17 31164200 31164621 + 0.666667 NA intron (NM_001042492, intron 4 of 57) intron (NM_001042492, intron 4 of 57) 69433 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 298.5-15 chr4 123900771 123901283 + 0.666667 NA intron (NR_027105, intron 4 of 5) MER53|DNA|hAT 126763 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 143.667-17 chr10 85436196 85436559 + 0.666667 NA intron (NR_120670, intron 1 of 2) intron (NR_120670, intron 1 of 2) 3514 NR_120670 101929662 Hs.639355 NR_120670 ENSG00000224504 LOC101929662 - uncharacterized LOC101929662 ncRNA 179.167-32 chr3 121600220 121600682 + 0.666667 NA intron (NM_016298, intron 1 of 3) intron (NM_016298, intron 1 of 3) 7072 NM_016298 51725 Hs.272564 NM_016298 ENSG00000163833 FBXO40 FBX40 F-box protein 40 protein-coding 157.667-11 chr10 90301019 90301672 + 0.666667 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 239460 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 135-83 chr6 82270652 82270981 + 0.666667 NA Intergenic Intergenic -23072 NM_015525 25998 Hs.306425 NM_015525 ENSG00000005700 IBTK BTBD26|BTKI inhibitor of Bruton tyrosine kinase protein-coding 235.833-4 chr11 15386865 15387805 + 0.666667 NA Intergenic Charlie2a|DNA|hAT-Charlie 238233 NM_001278315 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 146.833-8 chr10 107157199 107157485 + 0.666667 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 7364 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 217.5-9 chr13 76474350 76474890 + 0.666667 NA Intergenic Intergenic 411785 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 159.833-40 chr5 68056057 68056346 + 0.666667 NA Intergenic Intergenic -133675 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 131.167-33 chr17 30085966 30086232 + 0.666667 NA intron (NM_198529, intron 18 of 22) AluJr4|SINE|Alu -30708 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 239.667-29 chr6 132132767 132133453 + 0.666667 NA promoter-TSS (NR_146223) promoter-TSS (NR_146223) -868 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 162-51 chr4 101433245 101433507 + 0.666667 NA Intergenic Intergenic 85599 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 121.167-29 chr15 100652392 100652666 + 0.666667 NA TTS (NM_198243) TTS (NM_198243) 49940 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 176.5-54 chr4 176785518 176785928 + 0.666667 NA intron (NM_005429, intron 1 of 6) intron (NM_005429, intron 1 of 6) 7199 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 156.333-93 chr9 5370343 5370687 + 0.666667 NA intron (NM_018465, intron 3 of 5) intron (NM_018465, intron 3 of 5) -30639 NM_006911 6013 Hs.368996 NM_006911 ENSG00000107018 RLN1 H1|H1RLX|RLXH1|bA12D24.3.1|bA12D24.3.2 relaxin 1 protein-coding 166.667-63 chr8 106966621 106966897 + 0.666667 NA Intergenic L1ME3F|LINE|L1 -196515 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 126.667-26 chr16 61449079 61449383 + 0.666667 NA Intergenic Intergenic -393465 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 193.833-14 chr14 53314869 53315173 + 0.666667 NA Intergenic L1PB2|LINE|L1 161667 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 234.667-23 chr3 104791845 104792378 + 0.666667 NA Intergenic Intergenic -574602 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 150.5-30 chr16 47244032 47244415 + 0.666667 NA intron (NM_030790, intron 12 of 17) MER21B|LTR|ERVL 100155 NR_110903 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 173.333-36 chr20 51968636 51969105 + 0.666667 NA Intergenic AluY|SINE|Alu -105957 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 131.333-102 chr8 127071892 127072188 + 0.666667 NA TTS (NR_119373) TTS (NR_119373) -7834 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 144-66 chr6 156387441 156387759 + 0.666667 NA Intergenic L1M5|LINE|L1 8850 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 142.333-97 chr8 64409616 64409924 + 0.666667 NA Intergenic Intergenic 30621 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 234.333-19 chr2 82303686 82304059 + 0.666667 NA Intergenic Intergenic -552931 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 216.667-7 chr11 114478774 114479458 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie 39649 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 141-35 chr17 64489414 64489906 + 0.666667 NA intron (NM_007215, intron 4 of 7) AluJo|SINE|Alu 7394 NM_007215 11232 Hs.437009 NM_007215 ENSG00000256525 POLG2 HP55|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB DNA polymerase gamma 2, accessory subunit protein-coding 173.333-18 chr14 23343242 23343635 + 0.666667 NA Intergenic MER4B-int|LTR|ERV1 9013 NM_020372 51310 Hs.373498 NM_016609 ENSG00000092096 SLC22A17 24p3R|BOCT|BOIT|NGALR|NGALR2|NGALR3|hBOIT solute carrier family 22 member 17 protein-coding 173.833-61 chr8 133924148 133924636 + 0.666667 NA Intergenic MIRb|SINE|MIR 37896 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 148-77 chr6 164761361 164761685 + 0.666667 NA Intergenic L1MD1|LINE|L1 60540 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 159.667-42 chr18 4423177 4423558 + 0.666667 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 31899 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 342.333-3 chr5 23322517 23323094 + 0.666667 NA Intergenic L1PA15|LINE|L1 -184804 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 150.833-43 chr5 113946990 113947243 + 0.666667 NA Intergenic L1MB8|LINE|L1 -414954 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 237.333-36 chr7 84468572 84469020 + 0.666667 NA Intergenic Intergenic -63680 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 126-3 chr1 60366077 60366439 + 0.666667 NA Intergenic L1ME3D|LINE|L1 256427 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 184.333-14 chr15 80803926 80804321 + 0.666667 NA intron (NM_018689, intron 1 of 28) THE1B|LTR|ERVL-MaLR 24753 NM_018689 57214 Hs.459088 NM_018689 ENSG00000103888 CEMIP CCSP1|HYBID|KIAA1199|TMEM2L cell migration inducing hyaluronidase 1 protein-coding 173.333-11 chr10 67128927 67129443 + 0.666667 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 116919 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 137-76 chr4 127877386 127877611 + 0.666667 NA Intergenic AluSx|SINE|Alu -3395 NM_014264 10733 Hs.172052 NM_014264 ENSG00000142731 PLK4 MCCRP2|SAK|STK18 polo like kinase 4 protein-coding 196.667-14 chr14 40758254 40758560 + 0.666667 NA Intergenic MLT1H2|LTR|ERVL-MaLR -196304 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 137.333-59 chr21 29535306 29535594 + 0.666667 NA Intergenic Intergenic 39403 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 126.167-98 chrX 69545110 69545401 + 0.666667 NA Intergenic Intergenic 40020 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 135-42 chr2 183104490 183104728 + 0.666667 NA Intergenic L1M1|LINE|L1 -12881 NM_001287584 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 139-21 chr17 34057936 34058223 + 0.666667 NA intron (NM_001094, intron 1 of 9) L2c|LINE|L2 98727 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 128.834-4 chr15 63052590 63053146 + 0.666667 NA intron (NM_001018008, intron 1 of 7) A-rich|Low_complexity|Low_complexity -3481 NR_147233 111064646 Hs.602995 NR_147233 TPM1-AS TPM1-AS1 TPM1 antisense RNA ncRNA 233-16 chr2 233438481 233439017 + 0.666667 NA intron (NM_152879, intron 9 of 29) (TATC)n|Simple_repeat|Simple_repeat 50595 NM_003648 8527 Hs.471675 NM_003648 ENSG00000077044 DGKD DGKdelta|dgkd-2 diacylglycerol kinase delta protein-coding 158.667-62 chr4 65322959 65323253 + 0.666667 NA 3' UTR (NM_001281766, exon 17 of 17) 3' UTR (NM_001281766, exon 17 of 17) -318606 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 129-101 chr8 133426562 133426820 + 0.666667 NA Intergenic Intergenic -129387 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 163.667-25 chr14 71798332 71798803 + 0.666667 NA Intergenic Intergenic -133604 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 129.167-34 chr17 59673775 59674069 + 0.666667 NA intron (NM_001288653, intron 15 of 31) AluJr4|SINE|Alu 33676 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 182.833-6 chr10 74086568 74086900 + 0.666667 NA intron (NM_014000, intron 8 of 21) intron (NM_014000, intron 8 of 21) 64094 NM_001320265 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 163.333-41 chr2 76495258 76495604 + 0.666667 NA Intergenic Intergenic -490534 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 234.667-10 chr12 15653978 15654614 + 0.666667 NA intron (NM_004447, intron 12 of 20) intron (NM_004447, intron 12 of 20) 107685 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 190.667-35 chr3 122560629 122560977 + 0.666667 NA intron (NM_031458, intron 1 of 10) intron (NM_031458, intron 1 of 10) 3497 NM_001146105 83666 Hs.518200 NM_031458 ENSG00000138496 PARP9 ARTD9|BAL|BAL1|MGC:7868 poly(ADP-ribose) polymerase family member 9 protein-coding 163.833-6 chr1 188896337 188896633 + 0.666667 NA Intergenic Intergenic 1452857 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 277.834-2 chr22 32538645 32539457 + 0.666667 NA intron (NM_003490, intron 8 of 13) intron (NM_003490, intron 8 of 13) 63814 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 147-80 chr7 43281400 43281693 + 0.666667 NA intron (NM_001287059, intron 2 of 27) MIR|SINE|MIR 130651 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 170.167-3 chr10 49524652 49525071 + 0.666667 NA promoter-TSS (NM_170753) promoter-TSS (NM_170753) -580 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 206.333-14 chr2 11690324 11690701 + 0.666667 NA intron (NM_001349207, intron 1 of 20) L1MEi|LINE|L1 12968 NM_001349207 23175 Hs.467740 NM_145693 ENSG00000134324 LPIN1 PAP1 lipin 1 protein-coding 141-53 chr21 15681051 15681385 + 0.666667 NA Intergenic Intergenic -48716 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 275.667-21 chr5 52420474 52421171 + 0.666667 NA Intergenic L1MC4|LINE|L1 -367094 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 217-26 chr4 121590256 121590802 + 0.666667 NA Intergenic Zaphod3|DNA|hAT-Tip100 106451 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 201-11 chr11 27131078 27131635 + 0.666667 NA intron (NR_125767, intron 3 of 4) intron (NR_125767, intron 3 of 4) 87412 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 224.333-14 chr16 25804519 25805102 + 0.666667 NA intron (NM_006040, intron 1 of 1) MIRb|SINE|MIR 112851 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 117.333-33 chr14 64051713 64052059 + 0.666667 NA exon (NM_182914, exon 48 of 116) exon (NM_182914, exon 48 of 116) 43239 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 160.167-54 chr5 148847607 148848007 + 0.666667 NA Intergenic MIR|SINE|MIR 21214 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 241-13 chr21 26247960 26248431 + 0.666667 NA Intergenic Intergenic -77067 NM_001136131 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 211.667-23 chr20 35654694 35655061 + 0.666667 NA promoter-TSS (NM_003915) promoter-TSS (NM_003915) -968 NM_003915 8904 Hs.246413 NM_003915 ENSG00000214078 CPNE1 COPN1|CPN1 copine 1 protein-coding 184-30 chr22 27003952 27004239 + 0.666667 NA Intergenic MIRb|SINE|MIR 56423 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 155.333-68 chr3 114244816 114245168 + 0.666667 NA Intergenic MSTA-int|LTR|ERVL-MaLR -7414 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 164.167-30 chr2 46069416 46069939 + 0.666667 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -227730 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 138.667-52 chr20 25046078 25046353 + 0.666667 NA intron (NM_032501, intron 2 of 13) AluSz|SINE|Alu 11924 NM_032501 84532 Hs.529353 NM_032501 ENSG00000154930 ACSS1 ACAS2L|ACECS1|AceCS2L acyl-CoA synthetase short chain family member 1 protein-coding 287.833 chr12 1139199 1139750 + 0.666667 NA intron (NR_027948, intron 6 of 19) MER44B|DNA|TcMar-Tigger 111726 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 124.667-102 chr5 124718351 124718837 + 0.666667 NA intron (NM_020747, intron 1 of 8) intron (NM_020747, intron 1 of 8) 26518 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 168-49 chr4 70982151 70982682 + 0.666667 NA 3' UTR (NM_001244766, exon 7 of 7) 3' UTR (NM_001244766, exon 7 of 7) -11233 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 163.833-3 chr1 64089981 64090226 + 0.666667 NA intron (NM_005012, intron 4 of 8) THE1B|LTR|ERVL-MaLR 22102 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 181.667-23 chr2 60072712 60073138 + 0.666667 NA Intergenic Intergenic 310111 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 235.667-27 chr8 137650040 137650422 + 0.666667 NA Intergenic MER72|LTR|ERV1 -236643 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 219.333-17 chr16 35372079 35372597 + 0.666667 NA intron (NR_027079, intron 1 of 8) L1M3|LINE|L1 8807 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 158.333-68 chr8 67117510 67117832 + 0.666667 NA intron (NM_001363133, intron 11 of 27) L2c|LINE|L2 33823 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 202.667-53 chr9 84196965 84197298 + 0.666667 NA Intergenic Intergenic 133688 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 163.667-29 chr18 60601249 60601683 + 0.666667 NA Intergenic L1MEc|LINE|L1 -228691 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 252.333-7 chr10 66392921 66393663 + 0.666667 NA intron (NM_001127384, intron 11 of 17) L1MC2|LINE|L1 -532744 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 131.667-73 chr22 45751015 45751325 + 0.666667 NA intron (NM_013236, intron 9 of 11) AluSz|SINE|Alu -9354 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 265.333-4 chr11 38525981 38526631 + 0.666667 NA Intergenic L1PBb|LINE|L1 120050 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 125.167-39 chr2 106307864 106308245 + 0.666667 NA Intergenic L1MC|LINE|L1 -61691 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 158.667-33 chr17 68961175 68961497 + 0.666667 NA Intergenic Intergenic -5944 NM_001288985 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 126-47 chr2 196933244 196933456 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -6643 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 172-59 chr6 28054367 28054751 + 0.666667 NA Intergenic GA-rich|Low_complexity|Low_complexity -18757 NM_001355425 442179 NM_001355425 OR1F12 OR1F12P|OR1F12Q|OR6-12|hs6M1-35P olfactory receptor family 1 subfamily F member 12 protein-coding 116-57 chr21 31662962 31663357 + 0.666667 NA intron (NM_000454, intron 1 of 4) intron (NM_000454, intron 1 of 4) 3537 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 141.167-47 chr21 19928212 19928664 + 0.666667 NA Intergenic Intergenic -28683 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 164.333-3 chr1 194429125 194429406 + 0.666667 NA Intergenic Intergenic 1124520 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 271.667-11 chr3 184706389 184707052 + 0.666667 NA Intergenic HUERS-P1-int|LTR|ERV1 5344 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 MAGE-F1 MAGE family member F1 protein-coding 146.333-29 chr14 37940022 37940325 + 0.666667 NA Intergenic Intergenic -38049 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 113.833-46 chr2 208055455 208055857 + 0.666667 NA Intergenic Intergenic -30129 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 120-10 chr10 17553979 17554231 + 0.666667 NA Intergenic Intergenic 63269 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 120.833-26 chr2 10987832 10988186 + 0.666667 NA Intergenic MLT1C|LTR|ERVL-MaLR 76075 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 131-10 chr11 109048232 109048576 + 0.666667 NA Intergenic Intergenic -373786 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 122.333-116 chr8 131764756 131764987 + 0.666667 NA Intergenic AluSx3|SINE|Alu -139222 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 225.5-48 chr8 116162478 116162913 + 0.666667 NA intron (NR_046215, intron 4 of 13) L2a|LINE|L2 162364 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 222.667-17 chr2 18931769 18932283 + 0.666667 NA Intergenic Intergenic 94945 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 142-20 chr11 10538323 10538683 + 0.666667 NA intron (NM_016422, intron 1 of 5) intron (NM_016422, intron 1 of 5) 2684 NM_016422 50862 Hs.44685 NM_016422 ENSG00000110315 RNF141 RFP141|ZFP26|ZNF230 ring finger protein 141 protein-coding 118.667-107 chr7 29027458 29027698 + 0.666667 NA intron (NM_001371256, intron 16 of 16) L1MA4|LINE|L1 47611 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 130.5-43 chr2 68351226 68351542 + 0.666667 NA Intergenic Intergenic -13898 NM_002664 5341 Hs.468840 NM_002664 ENSG00000115956 PLEK P47 pleckstrin protein-coding 165-34 chr3 30160240 30160560 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -226244 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 133-39 chr2 6088170 6088500 + 0.666667 NA Intergenic Intergenic 106357 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 159.333-32 chr2 25433568 25433829 + 0.666667 NA intron (NM_033147, intron 13 of 19) intron (NM_033147, intron 13 of 19) -91108 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 305.5 chr18 4582706 4583500 + 0.666667 NA Intergenic Intergenic -127796 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 164-84 chrX 88271747 88272051 + 0.666667 NA Intergenic Intergenic -475326 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 123.5-48 chr2 126987729 126987977 + 0.666667 NA Intergenic MLT1E-int|LTR|ERVL-MaLR 88963 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 146.5-87 chr8 69070303 69070794 + 0.666667 NA intron (NR_039986, intron 1 of 4) intron (NR_039986, intron 1 of 4) 33642 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 123.333-114 chr8 122299943 122300194 + 0.666667 NA Intergenic L1PA3|LINE|L1 268576 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 116.667-97 chr6 138088687 138088965 + 0.666667 NA 3' UTR (NM_022121, exon 3 of 3) 3' UTR (NM_022121, exon 3 of 3) 18593 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 146.333-65 chr3 98326052 98326422 + 0.666667 NA Intergenic Intergenic -27617 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 193-20 chr17 60342851 60343179 + 0.666667 NA intron (NM_032582, intron 2 of 33) L1P2|LINE|L1 49118 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 264.833-9 chr7 42169026 42169884 + 0.666667 NA intron (NM_000168, intron 2 of 14) L1ME4a|LINE|L1 67754 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 120.667-59 chr2 83404280 83404491 + 0.666667 NA Intergenic MLT2D|LTR|ERVL -118429 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 121-89 chr8 101287875 101288121 + 0.666667 NA Intergenic Intergenic -80895 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 124.333-88 chr6 121385445 121385769 + 0.666667 NA Intergenic HAL1|LINE|L1 -50039 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 146.333-98 chr8 134385740 134386217 + 0.666667 NA Intergenic Intergenic -212093 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 176.667-64 chr5 86605538 86605877 + 0.666667 NA Intergenic Intergenic -12234 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 135.5-20 chr11 86694325 86694720 + 0.666667 NA Intergenic Intergenic -21886 NM_001161586 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 205-37 chr6 154554582 154555129 + 0.666667 NA Intergenic Intergenic -44170 NM_001368117 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 188.667-52 chr5 164142261 164142702 + 0.666667 NA Intergenic L1PA5|LINE|L1 324921 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 180.667-26 chr15 44620547 44620964 + 0.666667 NA intron (NM_025137, intron 14 of 39) AluSx|SINE|Alu 42907 NM_001160227 80208 Hs.656271 NM_025137 ENSG00000104133 SPG11 ALS5|CMT2X|KIAA1840 SPG11 vesicle trafficking associated, spatacsin protein-coding 146.5-8 chr1 227599862 227600253 + 0.666667 NA intron (NR_102302, intron 2 of 5) L1PA13|LINE|L1 36501 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 171-58 chr7 112162700 112163074 + 0.666667 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 43512 NM_014705 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 132.833-27 chr18 42207313 42207779 + 0.666667 NA intron (NR_046174, intron 1 of 9) L1ME3A|LINE|L1 20878 NR_046174 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 151.667-29 chr17 71434349 71434618 + 0.666667 NA Intergenic Intergenic -232304 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 241.5-2 chr1 118985812 118986469 + 0.666667 NA intron (NM_152380, intron 1 of 7) intron (NM_152380, intron 1 of 7) 2203 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 130.667-99 chr8 131150688 131150907 + 0.666667 NA Intergenic MLT1K|LTR|ERVL-MaLR -109888 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 177.167-13 chr17 80472821 80473213 + 0.666667 NA intron (NM_002522, intron 3 of 4) intron (NM_002522, intron 3 of 4) 3590 NM_002522 4884 Hs.514556 NM_002522 ENSG00000171246 NPTX1 NP1 neuronal pentraxin 1 protein-coding 190.167-35 chr4 40238959 40239436 + 0.666667 NA intron (NM_001278359, intron 2 of 3) intron (NM_001278359, intron 2 of 3) 42166 NM_004310 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 147.667-50 chr4 30289624 30290131 + 0.666667 NA Intergenic LTR103_Mam|LTR|ERV1? -430492 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 148-42 chr2 55721405 55721700 + 0.666667 NA Intergenic L1ME3A|LINE|L1 -27708 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 239.833-2 chr1 117460712 117461177 + 0.666667 NA intron (NM_006699, intron 7 of 12) L1ME3E|LINE|L1 93495 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 130.833-48 chr4 55642874 55643154 + 0.666667 NA Intergenic Intergenic -6221 NR_120489 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 159.667-75 chr5 179970516 179970973 + 0.666667 NA intron (NM_001280801, intron 5 of 7) intron (NM_001280801, intron 5 of 7) 44653 NR_029885 442908 NR_029885 ENSG00000198995 MIR340 MIRN340|hsa-mir-340|mir-340 microRNA 340 ncRNA 154-42 chr2 159935581 159935934 + 0.666667 NA 3' UTR (NM_001195641, exon 30 of 30) 3' UTR (NM_001195641, exon 30 of 30) -31001 NM_001198759 100526664 Hs.153563 NM_001198759 ENSG00000248672 LY75-CD302 CD205|CLEC13B|DEC-205|LY75|Ly-75|gp200-MR6 LY75-CD302 readthrough protein-coding 137-10 chr10 57582336 57582648 + 0.666667 NA Intergenic Intergenic -277933 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 133.667-102 chr9 37185186 37185453 + 0.666667 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 64721 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 168-35 chr22 30478077 30478515 + 0.666667 NA Intergenic AluSx|SINE|Alu 3460 NR_001580 376844 Hs.534651 NR_001580 SDC4P - syndecan 4 pseudogene pseudo 127.333-5 chr1 119349059 119349503 + 0.666667 NA intron (NR_146623, intron 2 of 3) MER4A1|LTR|ERV1 -19504 NM_016527 51179 Hs.659767 NM_016527 ENSG00000116882 HAO2 GIG16|HAOX2 hydroxyacid oxidase 2 protein-coding 147.5-39 chr18 61183836 61184334 + 0.666667 NA Intergenic Intergenic -149345 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 152.167-18 chr15 43027535 43028198 + 0.666667 NA intron (NM_174916, intron 21 of 46) intron (NM_174916, intron 21 of 46) 78172 NM_174916 197131 Hs.591121 NM_174916 ENSG00000159459 UBR1 JBS ubiquitin protein ligase E3 component n-recognin 1 protein-coding 210.167-25 chr7 5116348 5116776 + 0.666667 NA Intergenic Intergenic 27984 NR_034163 645700 Hs.690815 NR_034163 ENSG00000159904 ZNF890P - zinc finger protein 890, pseudogene pseudo 167.167-19 chr11 82593183 82593554 + 0.666667 NA Intergenic Intergenic 140496 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 260.333-21 chrX 57131913 57132411 + 0.666667 NA Intergenic Intergenic 5463 NM_019003 54466 Hs.460725 NM_019003 ENSG00000147059 SPIN2A DXF34|SPIN2|TDRD25|dJ323P24.1 spindlin family member 2A protein-coding 177.333-58 chr7 75764980 75765449 + 0.666667 NA Intergenic LTR16C|LTR|ERVL 24532 NM_006072 10344 Hs.131342 NM_006072 ENSG00000006606 CCL26 IMAC|MIP-4a|MIP-4alpha|SCYA26|TSC-1 C-C motif chemokine ligand 26 protein-coding 156-47 chr20 7169698 7170072 + 0.666667 NA intron (NR_110609, intron 5 of 7) intron (NR_110609, intron 5 of 7) 84317 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 242.667-13 chr15 60128254 60128889 + 0.666667 NA Intergenic Intergenic 124260 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 224.833-4 chr14 61875169 61875624 + 0.666667 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) -52299 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 169-10 chr11 77883780 77884324 + 0.666667 NA intron (NM_033547, intron 21 of 22) intron (NM_033547, intron 21 of 22) 42914 NM_001363564 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 142.167-14 chr10 122426975 122427331 + 0.666667 NA intron (NM_001001974, intron 11 of 11) intron (NM_001001974, intron 11 of 11) 10188 NR_037506 100500866 NR_037506 ENSG00000265442 MIR3941 - microRNA 3941 ncRNA 182.333-70 chr8 53181592 53181973 + 0.666667 NA Intergenic L1ME1|LINE|L1 69855 NM_000912 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 159-37 chr19 51553812 51554154 + 0.666667 NA Intergenic Intergenic -17300 NR_136208 7728 Hs.119014 NM_007147 ENSG00000105497 ZNF175 OTK18 zinc finger protein 175 protein-coding 174.333-22 chr16 84166860 84167246 + 0.666667 NA intron (NM_001318756, intron 3 of 7) MER21C|LTR|ERVL 8013 NM_001318756 123872 Hs.310164 NM_178452 ENSG00000154099 DNAAF1 CILD13|LRRC50|ODA7|swt dynein axonemal assembly factor 1 protein-coding 145.667-91 chr6 118767852 118768130 + 0.666667 NA Intergenic Intergenic -14717 NR_037662 100287632 Hs.334026 NR_037662 SELENOKP3 - selenoprotein K pseudogene 3 pseudo 171.833-35 chr4 64370382 64370857 + 0.666667 NA intron (NM_001363796, intron 2 of 11) intron (NM_001363796, intron 2 of 11) 38831 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 142.333-14 chr10 91812170 91812471 + 0.666667 NA intron (NM_025235, intron 1 of 26) intron (NM_025235, intron 1 of 26) 13894 NM_025235 80351 Hs.329327 NM_025235 ENSG00000107854 TNKS2 ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6 tankyrase 2 protein-coding 121.5-106 chr8 127122177 127122644 + 0.666667 NA Intergenic Intergenic -40189 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 165.333-18 chr14 41030297 41030622 + 0.666667 NA intron (NR_109758, intron 3 of 3) intron (NR_109758, intron 3 of 3) 75748 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 125-100 chr8 133285682 133285970 + 0.666667 NA intron (NM_006096, intron 1 of 15) intron (NM_006096, intron 1 of 15) 11426 NM_001258432 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 153.167-32 chr3 66690983 66691448 + 0.666667 NA Intergenic MIR|SINE|MIR 47121 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 157.833-46 chr3 176372143 176372391 + 0.666667 NA Intergenic L1MA5A|LINE|L1 127716 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 159.833-44 chr7 29168550 29168968 + 0.666667 NA intron (NM_001293069, intron 2 of 13) intron (NM_001293069, intron 2 of 13) 21298 NM_001371262 180.5-34 chr20 18433228 18433515 + 0.666667 NA intron (NM_001367611, intron 9 of 20) AluSx|SINE|Alu 33659 NM_001367613 55184 Hs.472225 NM_018152 ENSG00000089091 DZANK1 ANKRD64|C20orf12|C20orf84 double zinc ribbon and ankyrin repeat domains 1 protein-coding 115.5-77 chr5 32924969 32925187 + 0.666667 NA Intergenic L3|LINE|CR1 -22365 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 122.333-79 chr4 33517103 33517391 + 0.666667 NA Intergenic MLT1E3|LTR|ERVL-MaLR 522646 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 120.667-55 chr2 35911676 35911949 + 0.666667 NA Intergenic Intergenic 440407 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 125.167-69 chr6 122262249 122262672 + 0.666667 NA Intergenic L1MA8|LINE|L1 -137091 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 145-20 chr11 111017024 111017316 + 0.666667 NA Intergenic L1ME4b|LINE|L1 80148 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 223.333-43 chr8 121749449 121749989 + 0.666667 NA Intergenic Intergenic -108279 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 144.167-47 chr20 38876277 38876594 + 0.666667 NA intron (NM_015568, intron 2 of 10) MER58B|DNA|hAT-Charlie -49982 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83 member D protein-coding 132-24 chr14 37091737 37092142 + 0.666667 NA intron (NM_001171170, intron 1 of 10) AluSz6|SINE|Alu -80087 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 130.667-94 chr8 110522249 110522510 + 0.666667 NA Intergenic MIR|SINE|MIR 505054 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 208.667-25 chr20 31246887 31247336 + 0.666667 NA Intergenic L1M2a|LINE|L1 -10553 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 118.333-50 chr2 70421967 70422400 + 0.666667 NA Intergenic L1ME4b|LINE|L1 59457 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 149.167-41 chr3 89754976 89755199 + 0.666667 NA Intergenic Intergenic 647466 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 125.333-119 chr8 75915514 75915923 + 0.666667 NA Intergenic L1MA4A|LINE|L1 375750 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 119.167-44 chr2 96245523 96245701 + 0.666667 NA Intergenic MLT2B4|LTR|ERVL 20385 NM_001193304 55654 Hs.164303 NM_017849 ENSG00000135956 TMEM127 - transmembrane protein 127 protein-coding 176-54 chr8 139089162 139089650 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -175365 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 151.333-86 chr8 78685753 78686077 + 0.666667 NA intron (NM_001362969, intron 3 of 9) MSTD|LTR|ERVL-MaLR 19826 NR_156423 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 132.833-72 chrX 82118796 82119073 + 0.666667 NA Intergenic AluJo|SINE|Alu 916832 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 113.667-115 chr7 7442281 7442561 + 0.666667 NA intron (NM_001037763, intron 20 of 34) intron (NM_001037763, intron 20 of 34) 93452 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 131.667-32 chr14 50484430 50484691 + 0.666667 NA intron (NM_198794, intron 5 of 31) L1ME3G|LINE|L1 48009 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 155.167-52 chr9 86340855 86341268 + 0.666667 NA intron (NM_001185059, intron 6 of 26) intron (NM_001185059, intron 6 of 26) 13349 NM_001330718 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 131.167-86 chrX 71964927 71965398 + 0.666667 NA intron (NM_001013627, intron 1 of 7) intron (NM_001013627, intron 1 of 7) 54074 NM_001013627 340527 Hs.397836 NM_001013627 ENSG00000204131 NHSL2 - NHS like 2 protein-coding 190-62 chr8 137489283 137489646 + 0.666667 NA Intergenic MIR|SINE|MIR -75876 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 118.333-17 chr11 78944548 78944957 + 0.666667 NA intron (NM_001098816, intron 6 of 33) MIRb|SINE|MIR -369888 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 170-41 chr2 226032774 226033266 + 0.666667 NA Intergenic Intergenic -109774 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 159-5 chr1 108873533 108873808 + 0.666667 NA Intergenic L2a|LINE|L2 -3315 NM_001321038 29899 Hs.584901 NM_013296 ENSG00000121957 GPSM2 CMCS|DFNB82|LGN|PINS G protein signaling modulator 2 protein-coding 126.333-4 chr1 158575768 158576080 + 0.666667 NA Intergenic L1ME3B|LINE|L1 3975 NM_001004477 128367 Hs.553589 NM_001004477 ENSG00000279111 OR10X1 OR1-13|OR1-14|OR10X1P olfactory receptor family 10 subfamily X member 1 (gene/pseudogene) protein-coding 147-10 chr11 5698683 5699005 + 0.666667 NA intron (NM_001199573, intron 4 of 7) L1MB7|LINE|L1 9054 NM_006074 10346 Hs.501778 NM_006074 ENSG00000132274 TRIM22 GPSTAF50|RNF94|STAF50 tripartite motif containing 22 protein-coding 226-18 chr4 146885428 146885901 + 0.666667 NA intron (NR_133922, intron 6 of 13) intron (NR_133922, intron 6 of 13) 60200 NR_133922 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 173.833-57 chr7 64663654 64663919 + 0.666667 NA Intergenic AluSx1|SINE|Alu -2297 NM_001282360 51427 Hs.50216 NM_016220 ENSG00000196247 ZNF107 Y8|ZFD25|ZNF588|smap-7 zinc finger protein 107 protein-coding 128.333-123 chr9 108494514 108494754 + 0.666667 NA Intergenic L1ME4b|LINE|L1 361352 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 135.333-60 chr4 102710492 102710850 + 0.666667 NA intron (NM_005908, intron 5 of 16) L1MA6|LINE|L1 50297 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 145.333-103 chr9 87142266 87142528 + 0.666667 NA Intergenic Intergenic -6247 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 125.5-34 chr18 14077539 14077781 + 0.666667 NA intron (NR_033354, intron 5 of 5) intron (NR_033354, intron 5 of 5) 54775 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 206.5-8 chr13 94524609 94525070 + 0.666667 NA intron (NM_001322186, intron 1 of 9) MLT1C|LTR|ERVL-MaLR 24567 NM_001322186 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 116-62 chr3 67694005 67694306 + 0.666667 NA intron (NR_109992, intron 3 of 6) L2b|LINE|L2 39458 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 133.5-2 chr1 59405679 59406155 + 0.666667 NA intron (NM_001350794, intron 5 of 14) intron (NM_001350794, intron 5 of 14) 95885 NM_001350799 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 151.5-11 chr1 235632902 235633173 + 0.666667 NA intron (NM_001098721, intron 1 of 3) intron (NM_001098721, intron 1 of 3) 16747 NM_001098722 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 127.833-42 chr2 147468226 147468600 + 0.666667 NA Intergenic Intergenic -376104 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 144.5-57 chr3 70918852 70919275 + 0.666667 NA Intergenic Intergenic 145861 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 189.5-47 chr5 11771819 11772574 + 0.666667 NA intron (NM_001288717, intron 1 of 20) (TTAATC)n|Simple_repeat|Simple_repeat 132250 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 193-44 chr8 122065939 122066274 + 0.666667 NA Intergenic Intergenic -424666 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 118.333-60 chr2 187129441 187129644 + 0.666667 NA Intergenic Intergenic -280372 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 152.667-33 chr15 39477613 39477970 + 0.666667 NA Intergenic Intergenic -103288 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 116.5-38 chr2 68274614 68274796 + 0.666667 NA Intergenic Intergenic -22173 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 163.833-8 chr10 60717140 60717567 + 0.666667 NA intron (NM_001204403, intron 1 of 43) Charlie17a|DNA|hAT-Charlie 16175 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 159.667-47 chr2 50876379 50876820 + 0.666667 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 155533 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 312.167-7 chr6 40304593 40305571 + 0.666667 NA Intergenic L2a|LINE|L2 50924 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 159.667-27 chr12 62472118 62472468 + 0.666667 NA intron (NM_001278472, intron 2 of 35) intron (NM_001278472, intron 2 of 35) 5467 NM_001278471 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 174-27 chr19 32304104 32304479 + 0.666667 NA Intergenic L1MA7|LINE|L1 -41319 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 126.833-57 chr6 91828418 91828739 + 0.666667 NA Intergenic Intergenic -138150 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 246 chr11 40646358 40646921 + 0.666667 NA intron (NM_020929, intron 2 of 4) AluYk4|SINE|Alu -353509 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 216-32 chr8 81837656 81838141 + 0.666667 NA intron (NM_001348189, intron 4 of 9) intron (NM_001348189, intron 4 of 9) 4287 NM_152836 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 114.167-57 chr20 54291378 54291828 + 0.666667 NA Intergenic Intergenic 83516 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 115.167-96 chr7 2455779 2456165 + 0.666667 NA Intergenic L1M4|LINE|L1 20411 NM_001291784 402635 NM_001291784 GRIFIN - galectin-related inter-fiber protein protein-coding 114.333-89 chr3 120848229 120848511 + 0.666667 NA Intergenic Intergenic -12013 NR_135570 101926983 Hs.553055 NR_135570 ENSG00000243593 LINC02049 - long intergenic non-protein coding RNA 2049 ncRNA 159.833-33 chr3 105527178 105527478 + 0.666667 NA intron (NM_001243280, intron 3 of 14) MIR3|SINE|MIR 160419 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 173-24 chr18 37915470 37916128 + 0.666667 NA Intergenic Intergenic 258664 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 122.833-50 chr20 51169584 51169905 + 0.666667 NA Intergenic L1MEf|LINE|L1 -146637 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 163.833-10 chr10 122759221 122759653 + 0.666667 NA intron (NR_003570, intron 3 of 27) L1MEc|LINE|L1 2743 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 220.333-25 chr5 64022720 64023070 + 0.666667 NA Intergenic Intergenic -60603 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 113.333-61 chr20 39872636 39872945 + 0.666667 NA Intergenic Intergenic -131671 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 127.333-96 chr6 92120560 92120966 + 0.666667 NA Intergenic AluSq2|SINE|Alu -430335 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 140.667-35 chr15 93858320 93858676 + 0.666667 NA intron (NR_120321, intron 1 of 3) Tigger3b|DNA|TcMar-Tigger 1938 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 143.333-96 chr8 135398989 135399360 + 0.666667 NA Intergenic Intergenic -58282 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 158.833-5 chr10 63122415 63122869 + 0.666667 NA Intergenic MLT1E1|LTR|ERVL-MaLR -10605 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 171.167-27 chr2 176817701 176818114 + 0.666667 NA Intergenic Intergenic 180153 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 114.167-31 chr14 52771588 52771769 + 0.666667 NA 3' UTR (NM_145251, exon 11 of 11) 3' UTR (NM_145251, exon 11 of 11) 19929 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 325.167-3 chr2 210409578 210410570 + 0.666667 NA intron (NR_110606, intron 1 of 4) Tigger1|DNA|TcMar-Tigger 66631 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 172.667-48 chr22 41763055 41763496 + 0.666667 NA exon (NM_152513, exon 19 of 31) exon (NM_152513, exon 19 of 31) -37347 NM_001304797 79879 Hs.474991 NM_024821 ENSG00000100147 CCDC134 - coiled-coil domain containing 134 protein-coding 181.333-2 chr1 92116428 92116826 + 0.666667 NA intron (NM_183242, intron 4 of 8) L1MEc|LINE|L1 36282 NM_183242 284697 Hs.676102 NM_183242 ENSG00000189195 BTBD8 - BTB domain containing 8 protein-coding 134.833-63 chr8 78520352 78520671 + 0.666667 NA intron (NM_181839, intron 1 of 2) MIRb|SINE|MIR 4171 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 176.333-21 chr14 52301248 52301741 + 0.666667 NA Intergenic AluJb|SINE|Alu -12818 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 153.167-43 chr5 132955957 132956371 + 0.666667 NA intron (NM_014423, intron 1 of 20) MER58B|DNA|hAT-Charlie 7470 NM_014423 27125 Hs.519313 NM_014423 ENSG00000072364 AFF4 AF5Q31|CHOPS|MCEF AF4/FMR2 family member 4 protein-coding 207.167-28 chr7 85046865 85047287 + 0.666667 NA intron (NM_152754, intron 7 of 16) intron (NM_152754, intron 7 of 16) 74855 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 215.667-26 chr2 209994510 209994954 + 0.666667 NA intron (NM_032504, intron 63 of 63) Tigger4a|DNA|TcMar-Tigger -7833 NM_001278286 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 135.5-77 chr8 109815234 109815734 + 0.666667 NA Intergenic Intergenic -123693 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 167.667-64 chr4 63421706 63421966 + 0.666667 NA Intergenic Intergenic 987614 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 252.333-14 chr18 33289322 33289701 + 0.666667 NA intron (NM_001308126, intron 12 of 23) AluSx|SINE|Alu 151060 NM_001371121 157.833-26 chr14 68958188 68958467 + 0.666667 NA intron (NM_001102, intron 1 of 20) intron (NM_001102, intron 1 of 20) 20975 NM_001102 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 150.167-16 chr14 59650199 59650795 + 0.666667 NA intron (NM_021136, intron 3 of 8) L1PREC2|LINE|L1 -3477 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 211.667-9 chr12 26561028 26561369 + 0.666667 NA intron (NM_002223, intron 35 of 56) MLT1B|LTR|ERVL-MaLR 271996 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 266.667-17 chr4 95363344 95363945 + 0.666667 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 185329 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 175.333-52 chr5 98862487 98862823 + 0.666667 NA intron (NR_157079, intron 31 of 34) intron (NR_157079, intron 31 of 34) 63879 NM_001270 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 117.167-30 chr17 39550815 39551237 + 0.666667 NA Intergenic MIR3|SINE|MIR 56894 NM_006160 4761 Hs.322431 NM_006160 ENSG00000171532 NEUROD2 EIEE72|NDRF|bHLHa1 neuronal differentiation 2 protein-coding 153.667-62 chr5 152261875 152262165 + 0.666667 NA intron (NR_109876, intron 1 of 2) MIR|SINE|MIR 143259 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 154.667-13 chr11 87128164 87128616 + 0.666667 NA intron (NM_001168724, intron 4 of 13) intron (NM_001168724, intron 4 of 13) 90456 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 157.333-48 chr3 94172449 94173020 + 0.666667 NA Intergenic Intergenic 109673 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 202.833-3 chr10 90427185 90427616 + 0.666667 NA intron (NR_110657, intron 3 of 6) intron (NR_110657, intron 3 of 6) 113405 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 131-9 chr11 45961545 45961895 + 0.666667 NA intron (NR_147890, intron 9 of 18) intron (NR_147890, intron 9 of 18) 39064 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 125.5-41 chr2 100421847 100422076 + 0.666667 NA Intergenic Charlie1|DNA|hAT-Charlie -4293 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 132.833-62 chr7 114039091 114039575 + 0.666667 NA Intergenic L1PA15|LINE|L1 -46994 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 124.667-37 chr14 75876018 75876274 + 0.666667 NA intron (NM_015072, intron 29 of 31) MamSINE1|SINE|tRNA-RTE 105849 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 142.5-26 chr15 50140534 50140880 + 0.666667 NA Intergenic Intergenic -21474 NR_073597 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 173-54 chr8 46256676 46257099 + 0.666667 NA Intergenic GSAT|Satellite|centr 360756 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 155.833-70 chrX 54094545 54095010 + 0.666667 NA intron (NM_001300788, intron 10 of 13) AluSg|SINE|Alu -49641 NM_001184896 23133 Hs.133352 NM_015107 ENSG00000172943 PHF8 JHDM1F|KDM7B|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 146.667-87 chr7 54868368 54868635 + 0.666667 NA Intergenic L1MEf|LINE|L1 109188 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 122.167-45 chr3 84740850 84741083 + 0.666667 NA intron (NR_033860, intron 11 of 20) intron (NR_033860, intron 11 of 20) 128609 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 165.667-66 chr7 45198080 45198429 + 0.666667 NA Intergenic AluSx|SINE|Alu 40463 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 200-22 chr15 55925626 55925951 + 0.666667 NA intron (NM_001329212, intron 4 of 28) intron (NM_001329212, intron 4 of 28) -8657 NR_104302 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 117-58 chr2 202325482 202325772 + 0.666667 NA Intergenic AluSc|SINE|Alu 32576 NR_003031 692058 NR_003031 ENSG00000238317 SNORD11 HBII-95 small nucleolar RNA, C/D box 11 snoRNA 125.833-18 chr12 7996425 7996695 + 0.666667 NA Intergenic L2|LINE|L2 -36156 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 151.333-26 chr13 69713410 69713786 + 0.666667 NA intron (NM_001286725, intron 8 of 9) L1M5|LINE|L1 -393615 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 113.333-18 chr10 94591017 94591272 + 0.666667 NA intron (NM_001289075, intron 14 of 20) intron (NM_001289075, intron 14 of 20) 45356 NM_001289073 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 204.667-35 chr3 191781902 191782384 + 0.666667 NA Intergenic Tigger17a|DNA|TcMar-Tigger 320980 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 173.667-38 chr3 72111357 72111722 + 0.666667 NA Intergenic Intergenic -11084 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 115.167-46 chr17 34197941 34198148 + 0.666667 NA Intergenic L1ME2|LINE|L1 -14412 NR_110748 101927239 Hs.603592 NR_110748 ENSG00000261156 LINC01989 - long intergenic non-protein coding RNA 1989 ncRNA 140.667-49 chr22 27036375 27036690 + 0.666667 NA Intergenic Intergenic 23986 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 175.333-4 chr10 101474376 101474866 + 0.666667 NA intron (NM_003939, intron 2 of 13) L1ME2|LINE|L1 113636 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 175.833-21 chr2 100175666 100176142 + 0.666667 NA Intergenic Intergenic -32350 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 143.167-23 chr16 26373037 26373288 + 0.666667 NA Intergenic Intergenic 347925 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 234.5-21 chr21 29203253 29204015 + 0.666667 NA intron (NR_027072, intron 1 of 1) L1M4|LINE|L1 10140 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 125.667-16 chr11 6435429 6435778 + 0.666667 NA intron (NM_000613, intron 7 of 9) AluJb|SINE|Alu 5384 NM_000613 3263 Hs.426485 NM_000613 ENSG00000110169 HPX HX hemopexin protein-coding 209-6 chr1 246866587 246867160 + 0.666667 NA intron (NM_015446, intron 26 of 35) intron (NM_015446, intron 26 of 35) 64485 NM_015446 25909 Hs.300887 NM_015446 ENSG00000153207 AHCTF1 ELYS|MST108|MSTP108|TMBS62 AT-hook containing transcription factor 1 protein-coding 208.167-22 chr5 66138983 66139451 + 0.666667 NA Intergenic Intergenic -5083 NM_001323534 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 203-28 chr3 42697375 42697830 + 0.666667 NA exon (NM_020707, exon 7 of 12) exon (NM_020707, exon 7 of 12) 3919 NR_027753 57467 Hs.476041 NM_020707 ENSG00000010282 HHATL C3orf3|GUP1|MBOAT3|MSTP002|OACT3 hedgehog acyltransferase like protein-coding 198.833-25 chr5 164102727 164103045 + 0.666667 NA Intergenic Intergenic 364516 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 136.167-35 chr2 33496869 33497107 + 0.666667 NA intron (NM_001349975, intron 3 of 19) intron (NM_001349975, intron 3 of 19) -16887 NM_015376 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 134.167-4 chr1 197074111 197074384 + 0.666667 NA Intergenic L1PB1|LINE|L1 -6980 NM_001994 2165 Hs.435782 NM_001994 ENSG00000143278 F13B FXIIIB coagulation factor XIII B chain protein-coding 161.333-64 chr5 102708829 102709285 + 0.666667 NA Intergenic Intergenic -37593 NR_103753 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 118.833-44 chr2 228624787 228625028 + 0.666667 NA Intergenic Intergenic -13512 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 263.666-2 chr2 52779314 52780035 + 0.666667 NA Intergenic Intergenic -77059 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 165.833-45 chr4 73135174 73135538 + 0.666667 NA intron (NM_198889, intron 14 of 32) intron (NM_198889, intron 14 of 32) -65597 NM_001300729 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 131.833-57 chr5 129101831 129102062 + 0.666667 NA intron (NM_016048, intron 1 of 4) L1MC3|LINE|L1 4258 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 141.333-103 chr9 108591899 108592333 + 0.666667 NA Intergenic Intergenic 263870 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 221.666-7 chrX 97404677 97405334 + 0.666667 NA intron (NM_007309, intron 25 of 26) intron (NM_007309, intron 25 of 26) 159530 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 122.333-47 chr19 40308838 40309150 + 0.666667 NA Intergenic AluJo|SINE|Alu -23649 NM_001243027 208 Hs.631535 NM_001626 ENSG00000105221 AKT2 HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA AKT serine/threonine kinase 2 protein-coding 162.834 chr11 63508397 63509035 + 0.666667 NA intron (NM_033101, intron 2 of 8) intron (NM_033101, intron 2 of 8) 729 NM_001142538 85329 Hs.502774 NM_033101 ENSG00000133317 LGALS12 GAL12|GRIP1 galectin 12 protein-coding 160.667-53 chr3 69538114 69538475 + 0.666667 NA Intergenic MLT1K|LTR|ERVL-MaLR -152206 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 138-109 chr8 122490634 122490954 + 0.666667 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 77850 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 203.5-30 chr3 160584110 160584552 + 0.666667 NA Intergenic L1MA4|LINE|L1 -18760 NM_002268 3840 Hs.467866 NM_002268 ENSG00000186432 KPNA4 IPOA3|QIP1|SRP3 karyopherin subunit alpha 4 protein-coding 169-59 chr8 52922230 52922604 + 0.666667 NA Intergenic Intergenic -17491 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 127.334-5 chr7 51185853 51186403 + 0.666667 NA intron (NM_015198, intron 4 of 12) intron (NM_015198, intron 4 of 12) 130681 NM_001287438 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 168.667-45 chr20 11677432 11677932 + 0.666667 NA Intergenic Intergenic 193033 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 194.333-45 chr9 34367397 34367763 + 0.666667 NA 3' UTR (NM_020702, exon 2 of 2) 3' UTR (NM_020702, exon 2 of 2) 9318 NM_020702 57462 Hs.522083 NM_020702 ENSG00000164976 MYORG IBGC7|KIAA1161|NET37 myogenesis regulating glycosidase (putative) protein-coding 120.667-107 chr7 91929284 91929530 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -11455 NM_147185 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 210-18 chr2 81485736 81486139 + 0.666667 NA Intergenic Intergenic -18991 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 164.5-23 chr16 13165073 13165357 + 0.666667 NA intron (NM_001145204, intron 2 of 4) L1MEc|LINE|L1 263617 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 124.167-92 chr8 133838854 133839141 + 0.666667 NA Intergenic Intergenic -47499 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 153.5-80 chr9 85530410 85530678 + 0.666667 NA Intergenic Intergenic 211485 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 181.833-7 chr10 120099306 120099690 + 0.666667 NA Intergenic Intergenic 140985 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 150.167-54 chr5 117959367 117959686 + 0.666667 NA intron (NR_104997, intron 2 of 2) L1M4c|LINE|L1 229165 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 160-28 chr14 65080423 65080864 + 0.666667 NA intron (NM_002382, intron 3 of 4) MIR3|SINE|MIR -9275 NR_045122 100506321 Hs.711267 NR_045122 ENSG00000259118 LOC100506321 - uncharacterized LOC100506321 ncRNA 164.667-8 chr10 63349688 63350078 + 0.666667 NA intron (NM_001322258, intron 2 of 24) intron (NM_001322258, intron 2 of 24) 23165 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 173.833-33 chr21 32173504 32173794 + 0.666667 NA Intergenic L1MB7|LINE|L1 -87354 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 184-41 chr4 69764153 69764773 + 0.666667 NA Intergenic L1MB2|LINE|L1 -3843 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 117-6 chr1 110158825 110159133 + 0.666667 NA intron (NM_001010898, intron 1 of 11) Kanga1a|DNA|TcMar-Tc2 8485 NM_001010898 388662 Hs.128382 NM_001010898 ENSG00000197106 SLC6A17 MRT48|NTT4 solute carrier family 6 member 17 protein-coding 173.833-7 chr10 52929704 52930017 + 0.666667 NA Intergenic MIRb|SINE|MIR -158160 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 121.333-51 chr2 114241947 114242341 + 0.666667 NA Intergenic Intergenic -200497 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 160-23 chr12 65186078 65186495 + 0.666667 NA intron (NM_001167614, intron 1 of 12) intron (NM_001167614, intron 1 of 12) 16703 NM_014319 23592 Hs.744150 NM_014319 ENSG00000174106 LEMD3 MAN1 LEM domain containing 3 protein-coding 216.667-13 chr14 47063753 47064122 + 0.666667 NA intron (NM_001113498, intron 6 of 16) intron (NM_001113498, intron 6 of 16) 279309 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 119.833-2 chr1 48486734 48487158 + 0.666667 NA Intergenic AluY|SINE|Alu -14738 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 199.333-25 chr20 52172487 52172968 + 0.666667 NA intron (NM_199427, intron 2 of 8) L1MEd|LINE|L1 19052 NM_018197 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 136.167-37 chr2 66296211 66296549 + 0.666667 NA Intergenic Intergenic 61948 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 206.667-46 chr7 38892725 38893248 + 0.666667 NA intron (NM_014396, intron 2 of 28) intron (NM_014396, intron 2 of 28) 16205 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 165.5-26 chr17 42606115 42606445 + 0.666667 NA intron (NM_178126, intron 1 of 8) intron (NM_178126, intron 1 of 8) 3094 NM_178126 162427 Hs.632262 NM_178126 ENSG00000141699 RETREG3 FAM134C reticulophagy regulator family member 3 protein-coding 166-36 chr20 35054991 35055327 + 0.666667 NA intron (NM_199368, intron 4 of 18) intron (NM_199368, intron 4 of 18) 37648 NM_015638 26133 Hs.168073 NM_015638 ENSG00000100991 TRPC4AP C20orf188|PPP1R158|TRRP4AP|TRUSS transient receptor potential cation channel subfamily C member 4 associated protein protein-coding 215.5-22 chr2 103550904 103551320 + 0.666667 NA Intergenic MER73|LTR|ERVL -566683 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 134.167-43 chr2 65507904 65508295 + 0.666667 NA Intergenic L1MD3|LINE|L1 -75500 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 233.833-18 chr8 133542644 133543146 + 0.666667 NA intron (NM_003033, intron 2 of 8) L1MC4|LINE|L1 28992 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 138.333-92 chr6 19624806 19625153 + 0.666667 NA Intergenic L1MA4A|LINE|L1 175158 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 181.667-8 chr10 92425363 92425806 + 0.666667 NA Intergenic AluSp|SINE|Alu 6923 NR_038243 100507674 Hs.568772 NR_038243 MARK2P9 - microtubule affinity regulating kinase 2 pseudogene 9 pseudo 134.333-46 chr17 45207968 45208311 + 0.666667 NA intron (NR_147507, intron 2 of 2) intron (NR_147507, intron 2 of 2) 13626 NR_147507 339192 Hs.560498 NR_147507 ENSG00000267121 LOC339192 - uncharacterized LOC339192 ncRNA 213.5-28 chr4 30578704 30579525 + 0.666667 NA Intergenic Intergenic -141255 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 160.667-20 chr12 12403120 12403488 + 0.666667 NA intron (NM_001300742, intron 2 of 3).2 intron (NM_001300742, intron 2 of 3).2 46226 NM_058169 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 165-63 chr8 135718607 135719075 + 0.666667 NA Intergenic Intergenic 261385 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 151.667-83 chr7 105098251 105098503 + 0.666667 NA intron (NM_182931, intron 15 of 26) AluJr4|SINE|Alu 84172 NM_182931 55904 Hs.592262 NM_018682 ENSG00000005483 KMT2E HDCMC04P|MLL5|NKp44L lysine methyltransferase 2E protein-coding 127.5-53 chr4 85776922 85777236 + 0.666667 NA intron (NM_001025616, intron 3 of 9) intron (NM_001025616, intron 3 of 9) -1719 NM_001346093 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 156.667-49 chr2 39587077 39587369 + 0.666667 NA intron (NR_037875, intron 5 of 5) L1ME3C|LINE|L1 -78275 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 212.333-14 chr14 87382400 87382957 + 0.666667 NA Intergenic Intergenic 272616 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 149.333-85 chr6 156493071 156493329 + 0.666667 NA Intergenic Intergenic 114450 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 186.5-27 chr14 88084908 88085437 + 0.666667 NA intron (NR_046094, intron 3 of 3) MIR|SINE|MIR -58860 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 230.5-13 chr5 28702997 28703412 + 0.666667 NA Intergenic Intergenic -223666 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 159.333-8 chr1 236720663 236720945 + 0.666667 NA intron (NM_001278344, intron 4 of 22) intron (NM_001278344, intron 4 of 22) 34305 NM_001278343 88 Hs.498178 NM_001103 ENSG00000077522 ACTN2 CMD1AA|CMH23 actinin alpha 2 protein-coding 145-52 chr20 22260846 22261198 + 0.666667 NA Intergenic Intergenic 21779 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 141.333-47 chr2 48081649 48081953 + 0.666667 NA Intergenic Intergenic -176008 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 127-45 chr2 40882829 40883070 + 0.666667 NA Intergenic Intergenic -370514 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 117-51 chr2 139147148 139147425 + 0.666667 NA Intergenic L1M5|LINE|L1 249962 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 121-63 chr4 42213872 42214070 + 0.666667 NA Intergenic L1PA16|LINE|L1 -61316 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 143.333-73 chr5 123891527 123891934 + 0.666667 NA Intergenic L1MA4|LINE|L1 346313 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 177.5-38 chr2 66563727 66564083 + 0.666667 NA intron (NM_002398, intron 9 of 12) intron (NM_002398, intron 9 of 12) -10125 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 212-9 chr14 66532429 66532797 + 0.666667 NA intron (NM_001024218, intron 1 of 21) MLT1O|LTR|ERVL-MaLR 25206 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 147.667-66 chr7 79252244 79252583 + 0.666667 NA intron (NM_001301128, intron 1 of 20) L1MA3|LINE|L1 -200544 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 330.333-3 chr4 130833976 130834853 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR 458053 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 115.167-36 chr15 25266867 25267080 + 0.666667 NA TTS (NR_047033) TTS (NR_047033) 382 NR_047033 100873857 NR_047033 ENSG00000276844 SNORD115-46 HBII-52-46 small nucleolar RNA, C/D box 115-46 snoRNA 163.5-3 chr1 91493235 91493525 + 0.666667 NA Intergenic Intergenic -7467 NM_001134419 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 156.167-39 chr21 26341820 26342205 + 0.666667 NA Intergenic Intergenic -51623 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 162.167-6 chr10 53246244 53246604 + 0.666667 NA Intergenic Intergenic -474724 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 293.666 chr1 63591218 63591989 + 0.666667 NA Intergenic MIRb|SINE|MIR -1808 NM_002633 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 142.333-70 chr3 109815740 109815968 + 0.666667 NA Intergenic L1M4c|LINE|L1 213026 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 160.667-46 chr20 8426394 8426718 + 0.666667 NA intron (NM_182734, intron 3 of 32) L1MA9|LINE|L1 177852 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 126.5-88 chr8 126912301 126912645 + 0.666667 NA Intergenic Intergenic -100681 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 117.167-57 chr22 40488926 40489101 + 0.666667 NA intron (NM_020831, intron 3 of 14) intron (NM_020831, intron 3 of 14) -25573 NM_001282660 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 173.834-3 chr12 1980639 1981321 + 0.666667 NA intron (NM_152640, intron 3 of 8) intron (NM_152640, intron 3 of 8) 23477 NM_152640 196513 Hs.130934 NM_152640 ENSG00000151065 DCP1B DCP1 decapping mRNA 1B protein-coding 245.833-16 chr8 18853114 18853574 + 0.666667 NA intron (NM_015310, intron 4 of 15) intron (NM_015310, intron 4 of 15) 33713 NM_001362819 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 157.167-9 chr1 208715799 208716285 + 0.666667 NA Intergenic Intergenic -12646 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 148.667-63 chr5 44274365 44274676 + 0.666667 NA Intergenic L1ME3F|LINE|L1 -114212 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 127.333-36 chr14 86824840 86825065 + 0.666667 NA Intergenic Intergenic -80826 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 123.167-78 chr4_GL000008v2_random 2801 3113 + 0.666667 NA Intergenic Intergenic 175214 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 161.667-78 chr7 50260263 50260670 + 0.666667 NA Intergenic L1M4a1|LINE|L1 -43598 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 190-13 chr14 58587721 58588257 + 0.666667 NA Intergenic Intergenic -46079 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 120-52 chr2 36014398 36014785 + 0.666667 NA Intergenic Intergenic 340979 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 113.333-11 chr1 190350173 190350377 + 0.666667 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 125735 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 135.667-13 chr10 44217203 44217444 + 0.666667 NA Intergenic L1M3a|LINE|L1 -75427 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 165-19 chr14 81419085 81419440 + 0.666667 NA intron (NM_001366850, intron 2 of 7) MIRb|SINE|MIR 8513 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 118.333-116 chr8 117903044 117903321 + 0.666667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 17731 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 134.167-40 chr2 40353443 40353735 + 0.666667 NA intron (NM_001351483, intron 2 of 8) (TGAACTG)n|Simple_repeat|Simple_repeat 76715 NM_021097 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 120.333-8 chr1 85441685 85441907 + 0.666667 NA intron (NM_001134445, intron 2 of 6) intron (NM_001134445, intron 2 of 6) 23363 NM_012137 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 194.667-64 chr8 86492163 86492497 + 0.666667 NA intron (NM_001286719, intron 2 of 8) intron (NM_001286719, intron 2 of 8) 16356 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 130.833-39 chr22 24865365 24865690 + 0.666667 NA intron (NM_001098498, intron 9 of 23) MIR3|SINE|MIR 59306 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 148-33 chr15 83983129 83983505 + 0.666667 NA exon (NM_001301110, exon 21 of 30) exon (NM_001301110, exon 21 of 30) -96870 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 216.667-43 chr6 150740666 150741316 + 0.666667 NA intron (NM_001329803, intron 2 of 13) intron (NM_001329803, intron 2 of 13) 19892 NM_001329801 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 122.667-55 chr21 31161862 31162317 + 0.666667 NA intron (NM_001353690, intron 16 of 27) intron (NM_001353690, intron 16 of 27) -1149 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 137.667-43 chr18 1349677 1349957 + 0.666667 NA intron (NR_023926, intron 2 of 5) intron (NR_023926, intron 2 of 5) 9812 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 128-40 chr19 32265063 32265327 + 0.666667 NA Intergenic Intergenic -80415 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 151.333-79 chr7 38413903 38414197 + 0.666667 NA intron (NM_139316, intron 16 of 19) L2a|LINE|L2 72473 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 141-83 chr7 131344416 131344685 + 0.666667 NA intron (NM_001321316, intron 1 of 17) Charlie2a|DNA|hAT-Charlie 16674 NM_013255 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 181.833-41 chr5 42155045 42155456 + 0.666667 NA TTS (NR_104635) TTS (NR_104635) 20095 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 159.167-28 chr18 80020504 80020947 + 0.666667 NA intron (NM_001305564, intron 1 of 2) LTR25-int|LTR|ERV1 13211 NM_001305563 10907 Hs.465498 NM_006701 ENSG00000141759 TXNL4A BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD thioredoxin like 4A protein-coding 174.833-36 chr5 14818083 14818414 + 0.666667 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 7764 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 181.667-44 chr4 60861191 60861712 + 0.666667 NA Intergenic L2a|LINE|L2 -61168 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 125.833-81 chr7 67428236 67428438 + 0.666667 NA Intergenic AluSx|SINE|Alu 92361 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 181.167-17 chr22 26660970 26661333 + 0.666667 NA intron (NR_033319, intron 1 of 3) intron (NR_033319, intron 1 of 3) 3669 NR_033320 440823 Hs.517502 NR_003491 ENSG00000225783 MIAT C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT myocardial infarction associated transcript ncRNA 143.833-50 chr8 38408262 38408720 + 0.666667 NA 3' UTR (NM_001286819, exon 11 of 11) 3' UTR (NM_001286819, exon 11 of 11) 21360 NM_001199660 137994 Hs.696457 NM_144652 ENSG00000165046 LETM2 SLC55A2 leucine zipper and EF-hand containing transmembrane protein 2 protein-coding 227.833-11 chr3 5059680 5060253 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR -62326 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 243.5-30 chr8 17099746 17100198 + 0.666667 NA intron (NR_146233, intron 10 of 15) intron (NR_146233, intron 10 of 15) -56510 NM_016353 51201 Hs.728241 NM_016353 ENSG00000104219 ZDHHC2 DHHC2|ZNF372 zinc finger DHHC-type containing 2 protein-coding 116-55 chr20 20924862 20925128 + 0.666667 NA Intergenic LTR16A1|LTR|ERVL 181363 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 144.667-64 chr3 59932392 59932694 + 0.666667 NA intron (NM_001320901, intron 5 of 6) intron (NM_001320901, intron 5 of 6) 148366 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 228-9 chr14 50778859 50779343 + 0.666667 NA intron (NM_016350, intron 5 of 28) intron (NM_016350, intron 5 of 28) -42696 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 158.833-44 chr4 45500009 45500379 + 0.666667 NA Intergenic Charlie15b|DNA|hAT-Charlie 623860 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 151.333-37 chr18 7960541 7960833 + 0.666667 NA intron (NM_002845, intron 7 of 30) AluJr|SINE|Alu 393371 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 179-49 chr7 32482428 32482764 + 0.666667 NA Intergenic MLT2B3|LTR|ERVL 7784 NM_012322 23658 Hs.424908 NM_012322 ENSG00000106355 LSM5 YER146W LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 126.667-105 chr8 117524971 117525302 + 0.666667 NA intron (NM_001282986, intron 1 of 2) L1ME4b|LINE|L1 4423 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 203.167-25 chr2 85678754 85679308 + 0.666667 NA Intergenic Intergenic -10290 NM_198843 6439 Hs.512690 NM_000542 ENSG00000168878 SFTPB PSP-B|SFTB3|SFTP3|SMDP1|SP-B surfactant protein B protein-coding 162-73 chr8 115262264 115262572 + 0.666667 NA Intergenic Intergenic 405595 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 171.333-7 chr1 115478199 115478600 + 0.666667 NA Intergenic Intergenic -140163 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 184-26 chr2 145962318 145962694 + 0.666667 NA Intergenic Intergenic -624551 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 124.667-20 chr11 74859137 74859472 + 0.666667 NA intron (NM_182969, intron 11 of 18) intron (NM_182969, intron 11 of 18) 89787 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 158.833-63 chr8 116343193 116343480 + 0.666667 NA Intergenic Intergenic -18277 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 113.667-45 chr15 85593561 85593873 + 0.666667 NA intron (NM_007200, intron 8 of 36) intron (NM_007200, intron 8 of 36) -26233 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 124.167-16 chr12 12463040 12463429 + 0.666667 NA intron (NM_001300742, intron 3 of 3).2 intron (NM_001300742, intron 3 of 3).2 99629 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 247.333-8 chr18 3488067 3488469 + 0.666667 NA Intergenic Intergenic 22018 NR_110429 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 217.333-3 chr10 75228076 75228592 + 0.666667 NA intron (NM_001324090, intron 10 of 11) AluJb|SINE|Alu 7623 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 147.5-93 chrX 31870313 31870734 + 0.666667 NA intron (NM_004009, intron 48 of 78) MER67D|LTR|ERV1 284946 NM_004020 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 208-45 chr8 141987493 141988021 + 0.666667 NA Intergenic MER74A|LTR|ERVL -188582 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 160.667-72 chr6 38440047 38440371 + 0.666667 NA intron (NM_001172418, intron 5 of 10) L2a|LINE|L2 -41387 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 163.167-12 chr15 60050274 60050584 + 0.666667 NA Intergenic HAL1|LINE|L1 46118 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 166.667-5 chr1 215353686 215354100 + 0.666667 NA Intergenic L1MB7|LINE|L1 -213411 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 153-56 chr8 135159716 135160069 + 0.666667 NA Intergenic MLT2A2|LTR|ERVL -74239 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 131.667-41 chr15 64180929 64181303 + 0.666667 NA intron (NM_001329607, intron 10 of 11) intron (NM_001329607, intron 10 of 11) -17961 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 133.5-88 chrX 64697342 64697698 + 0.666667 NA Intergenic Intergenic 278930 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 214.167-6 chr14 45562788 45563284 + 0.666667 NA Intergenic L2c|LINE|L2 152566 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 168.167-26 chr18 3041015 3041480 + 0.666667 NA Intergenic AluSz|SINE|Alu -29300 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 167.333-39 chr2 222128960 222129468 + 0.666667 NA Intergenic Intergenic -168933 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 191-2 chr1 216515288 216515776 + 0.666667 NA intron (NM_001243518, intron 7 of 7) intron (NM_001243518, intron 7 of 7) -92084 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 178-58 chr7 81683699 81683984 + 0.666667 NA intron (NR_126025, intron 1 of 10) intron (NR_126025, intron 1 of 10) 7565 NR_126025 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 161.334-6 chr5 128671224 128671822 + 0.666667 NA Intergenic MIRb|SINE|MIR -133278 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 205.833-22 chr3 42389804 42390307 + 0.666667 NA Intergenic ERVL-B4-int|LTR|ERVL 20555 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 198.833-4 chr11 91372787 91373134 + 0.666667 NA Intergenic Intergenic -503758 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 227.333-12 chr14 55604662 55605112 + 0.666667 NA intron (NR_073129, intron 2 of 45) intron (NR_073129, intron 2 of 45) 24680 NM_001271014 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 129.667-75 chr4 38583065 38583331 + 0.666667 NA Intergenic MLT1H|LTR|ERVL-MaLR 19195 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 175-32 chr2 193133180 193133616 + 0.666667 NA Intergenic L1MCa|LINE|L1 383553 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 190.5-22 chr16 53617518 53617803 + 0.666667 NA intron (NM_001127897, intron 22 of 24) MIR3|SINE|MIR 86199 NM_001328423 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 118-119 chr8 79764477 79764786 + 0.666667 NA 3' UTR (NM_012258, exon 5 of 5) 3' UTR (NM_012258, exon 5 of 5) 1844 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 204.667-29 chr21 31231855 31232285 + 0.666667 NA intron (NM_001353686, intron 6 of 27) L1MB3|LINE|L1 -71130 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 162.833-20 chr19 51697737 51698057 + 0.666667 NA intron (NR_024330, intron 1 of 7) MIR|SINE|MIR -4441 NR_108100 102238594 Hs.640185 NR_108100 ENSG00000269959 SPACA6P-AS LINC01129 SPACA6P antisense RNA ncRNA 147.833-39 chr2 169879905 169880261 + 0.666667 NA intron (NM_172070, intron 5 of 38) intron (NM_172070, intron 5 of 38) 52575 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 129-13 chr10 56834293 56834582 + 0.666667 NA Intergenic Intergenic 470122 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 180-20 chr19 48411963 48412427 + 0.666667 NA intron (NM_000836, intron 3 of 12) AluY|SINE|Alu 17320 NM_000836 2906 Hs.445015 NM_000836 ENSG00000105464 GRIN2D EB11|EIEE46|GluN2D|NMDAR2D|NR2D glutamate ionotropic receptor NMDA type subunit 2D protein-coding 197-12 chr12 123810428 123810951 + 0.666667 NA intron (NM_207437, intron 18 of 77) AluY|SINE|Alu 48194 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 135.667-48 chr18 60340343 60340826 + 0.666667 NA Intergenic Intergenic 32191 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 222 chr1 187123150 187123592 + 0.666667 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 30529 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 158-12 chr11 129558728 129559170 + 0.666667 NA Intergenic L1P4d|LINE|L1 58320 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 163.167-21 chr2 46341666 46342128 + 0.666667 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 44490 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 153.833-16 chr12 47248314 47248606 + 0.666667 NA Intergenic MER112|DNA|hAT-Charlie -32017 NR_026544 100233209 Hs.657722 NR_026544 ENSG00000247774 PCED1B-AS1 - PCED1B antisense RNA 1 ncRNA 170-28 chr17 57863335 57863774 + 0.666667 NA intron (NM_001271875, intron 10 of 10) intron (NM_001271875, intron 10 of 10) -13510 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 121-61 chr3 149765423 149765724 + 0.666667 NA intron (NM_001144960, intron 5 of 5) intron (NM_001144960, intron 5 of 5) -13074 NR_135149 51122 Hs.432729 NM_016094 ENSG00000114744 COMMD2 HSPC042 COMM domain containing 2 protein-coding 144-31 chr2 12981821 12982182 + 0.666667 NA intron (NR_038434, intron 4 of 5) intron (NR_038434, intron 4 of 5) 25012 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 137.667-89 chr7 9097792 9098075 + 0.666667 NA Intergenic Intergenic -536337 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 152.333-33 chr2 89779104 89779522 + 0.666667 NA Intergenic Intergenic -141406 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 295-7 chr9 105509421 105509950 + 0.666667 NA intron (NM_001287191, intron 8 of 13) intron (NM_001287191, intron 8 of 13) -10139 NR_104269 26134 Hs.113150 NR_104269 ENSG00000229419 RALGAPA1P1 GARNL2|GARNL2P|RALGAPA1P|bA235C23.1 Ral GTPase activating protein catalytic alpha subunit 1 pseudogene 1 pseudo 154.333-68 chr6 141398479 141398817 + 0.666667 NA Intergenic Intergenic 690151 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 116.833-38 chr3 194009972 194010155 + 0.666667 NA TTS (NR_136180) TTS (NR_136180) -6404 NR_033944 647323 Hs.652830 NR_033944 ENSG00000214146 LINC02026 - long intergenic non-protein coding RNA 2026 ncRNA 199.333-6 chr12 66246839 66247358 + 0.666667 NA intron (NM_007199, intron 11 of 11) AluSx|SINE|Alu -3984 NR_106757 102465249 NR_106757 ENSG00000284011 MIR6502 hsa-mir-6502 microRNA 6502 ncRNA 115-69 chr5 178663787 178663979 + 0.666667 NA Intergenic MIRb|SINE|MIR -36833 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 129-36 chr18 39277726 39277942 + 0.666667 NA intron (NR_024391, intron 3 of 3) intron (NR_024391, intron 3 of 3) 344341 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 129.667-82 chr5 44124776 44125091 + 0.666667 NA Intergenic L1PB1|LINE|L1 -263799 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 194.167-9 chr11 74654929 74655648 + 0.666667 NA Intergenic L1M4a2|LINE|L1 56079 NM_001304417 25884 Hs.432379 NM_015424 ENSG00000054938 CHRDL2 BNF1|CHL2 chordin like 2 protein-coding 248.667-10 chr13 84995695 84996168 + 0.666667 NA Intergenic AluSz|SINE|Alu 152126 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 183.834-8 chr6 126786356 126787094 + 0.666667 NA Intergenic (GTTT)n|Simple_repeat|Simple_repeat 302094 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 157.667-23 chr14 53728216 53728548 + 0.666667 NA Intergenic Intergenic 220102 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 255-6 chr13 61098055 61098451 + 0.666667 NA Intergenic MER39|LTR|ERV1 101627 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 158-35 chr4 82322285 82322598 + 0.666667 NA Intergenic L1ME1|LINE|L1 51550 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 169.667-9 chr10 105330440 105330696 + 0.666667 NA Intergenic Intergenic 489765 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 181-17 chr12 89910582 89911083 + 0.666667 NA Intergenic HAL1|LINE|L1 -36861 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 114.667-69 chr21 15271489 15271737 + 0.666667 NA Intergenic Intergenic -206613 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 154.333-53 chr3 179432134 179432434 + 0.666667 NA intron (NM_021629, intron 1 of 9) intron (NM_021629, intron 1 of 9) 19186 NM_021629 59345 Hs.173030 NM_021629 ENSG00000114450 GNB4 CMTD1F G protein subunit beta 4 protein-coding 183-56 chr8 119787892 119788503 + 0.666667 NA intron (NM_003184, intron 14 of 25) L1PA7|LINE|L1 44644 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 181-2 chr1 64238084 64238503 + 0.666667 NA intron (NR_158768, intron 8 of 9) AluSz6|SINE|Alu 34670 NM_001366234 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 135.333-21 chr14 49802578 49802886 + 0.666667 NA intron (NM_001301732, intron 19 of 31) intron (NM_001301732, intron 19 of 31) 34579 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 237-16 chr5 41841929 41842541 + 0.666667 NA intron (NR_157114, intron 6 of 15) intron (NR_157114, intron 6 of 15) 1422 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 175.333-44 chr4 54953207 54953580 + 0.666667 NA Intergenic Intergenic 172202 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 122.833-6 chr1 211676840 211677072 + 0.666667 NA intron (NR_148994, intron 1 of 3) intron (NR_148994, intron 1 of 3) 1194 NR_148994 91548 Hs.367839 NR_148994 LOC91548 - uncharacterized LOC91548 ncRNA 160.667-40 chr2 45625336 45625787 + 0.666667 NA Intergenic L3|LINE|CR1 -14294 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 133.667-11 chr1 190537296 190537506 + 0.666667 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 58850 NR_110717 101929120 Hs.602301 NR_110716 LINC01351 - long intergenic non-protein coding RNA 1351 ncRNA 235.833-17 chr5 86123267 86123742 + 0.666667 NA Intergenic Intergenic -158940 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 138.333-116 chr9 106912018 106912280 + 0.666667 NA intron (NM_001347997, intron 1 of 12) intron (NM_001347997, intron 1 of 12) 48983 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 176.167-23 chr2 191042282 191042643 + 0.666667 NA intron (NM_003151, intron 14 of 23) L1MC5a|LINE|L1 20936 NR_136318 105373805 Hs.570280 NR_136318 ENSG00000231858 LOC105373805 - uncharacterized LOC105373805 ncRNA 160-55 chr3 139857217 139857762 + 0.666667 NA Intergenic Intergenic -77696 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 124.333-78 chr5 38575372 38575823 + 0.666667 NA intron (NR_103554, intron 1 of 8) intron (NR_103554, intron 1 of 8) -18036 NR_037423 100500824 NR_037423 ENSG00000265304 MIR3650 - microRNA 3650 ncRNA 290.5-4 chr12 64284158 64284645 + 0.666667 NA intron (NM_001099676, intron 6 of 10) intron (NM_001099676, intron 6 of 10) -62105 NM_152440 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 176.833-17 chr2 134884203 134884582 + 0.666667 NA intron (NR_036549, intron 1 of 4) intron (NR_036549, intron 1 of 4) 26572 NR_049856 100847069 NR_049856 ENSG00000263783 MIR5590 - microRNA 5590 ncRNA 119-74 chr4 74220422 74220696 + 0.666667 NA intron (NM_001144978, intron 5 of 7) L1M8|LINE|L1 62441 NM_001351314 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 136.667-78 chr5 16980921 16981451 + 0.666667 NA Intergenic (A)n|Simple_repeat|Simple_repeat -44898 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 181.167-25 chr7 39847114 39847583 + 0.666667 NA Intergenic Intergenic 102071 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 171-36 chr3 122058826 122059278 + 0.666667 NA intron (NM_001206925, intron 1 of 5) intron (NM_001206925, intron 1 of 5) 3690 NM_001206924 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 176.333-19 chr13 94226258 94226656 + 0.666667 NA intron (NM_005708, intron 4 of 8) L1MA6|LINE|L1 -38466 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 254-30 chr8 4460008 4460736 + 0.666667 NA intron (NM_033225, intron 2 of 69) L1MB8|LINE|L1 534542 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 121.667-6 chr1 188387832 188388128 + 0.666667 NA Intergenic L1MC3|LINE|L1 944352 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 134.667-28 chr14 62300535 62300799 + 0.666667 NA Intergenic Intergenic -160694 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 184.834-3 chr2 105795689 105796373 + 0.666667 NA intron (NM_003581, intron 1 of 4) intron (NM_003581, intron 1 of 4) 50968 NM_001004722 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 144.333-43 chr2 40471152 40471401 + 0.666667 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) -19186 NM_001351490 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 141.667-47 chr2 58874334 58874650 + 0.666667 NA intron (NR_033873, intron 3 of 13) MIR3|SINE|MIR -343216 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 198.667-14 chr12 21615005 21615422 + 0.666667 NA Intergenic Intergenic -10366 NM_021957 2998 Hs.82614 NM_021957 ENSG00000111713 GYS2 - glycogen synthase 2 protein-coding 171.167-31 chr20 10336666 10337022 + 0.666667 NA Intergenic Intergenic 95081 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 185.333-57 chr7 10310669 10311146 + 0.666667 NA Intergenic Intergenic -391769 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 126-26 chr13 77116598 77117071 + 0.666667 NA intron (NM_015057, intron 55 of 82) intron (NM_015057, intron 55 of 82) 41320 NR_046716 100874212 Hs.569288 NR_046716 ENSG00000236051 MYCBP2-AS1 - MYCBP2 antisense RNA 1 ncRNA 173.333-52 chr5 15721219 15721561 + 0.666667 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -106388 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 209.833-5 chr11 50616383 50616789 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 207439 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 121.333-97 chr6 131957394 131957646 + 0.666667 NA Intergenic Intergenic -6148 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 185.167-35 chr5 44150913 44151306 + 0.666667 NA Intergenic Intergenic -237623 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 256.167-9 chr2 102556109 102556585 + 0.666667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -63206 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 152.333-36 chr20 20239914 20240285 + 0.666667 NA intron (NM_015585, intron 18 of 26) L2|LINE|L2 -128005 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 246.333-10 chr15 99226312 99226909 + 0.666667 NA intron (NR_109947, intron 4 of 12) L2b|LINE|L2 22971 NR_109947 64927 Hs.513195 NM_022905 ENSG00000103852 TTC23 HCC-8 tetratricopeptide repeat domain 23 protein-coding 270.667-7 chr18 74709360 74709846 + 0.666667 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 78640 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 121.667-39 chr17 69982789 69983191 + 0.666667 NA intron (NR_110875, intron 4 of 4) L2a|LINE|L2 21283 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 119.667-34 chr18 67307768 67308028 + 0.666667 NA Intergenic Intergenic -208648 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 136.333-4 chr1 184041550 184041827 + 0.666667 NA Intergenic Intergenic -3960 NM_001303421 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|ColGalT 2|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 206-14 chr16 73800625 73801203 + 0.666667 NA Intergenic Intergenic 414109 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 131.333-56 chr2 191676139 191676492 + 0.666667 NA Intergenic Intergenic -1757 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 193.667-51 chr7 89879630 89879999 + 0.666667 NA Intergenic L1MA9|LINE|L1 -239586 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 199.333-23 chr2 201605603 201605981 + 0.666667 NA intron (NM_001168221, intron 1 of 15) L1MC4|LINE|L1 13386 NM_152525 151254 Hs.335788 NM_152525 ENSG00000155754 C2CD6 ALS2CR11 C2 calcium dependent domain containing 6 protein-coding 163.167-15 chr15 100356232 100356623 + 0.666667 NA Intergenic AluSx|SINE|Alu -5709 NR_028139 388182 Hs.136982 NM_207383 ENSG00000189419 SPATA41 HSD47 spermatogenesis associated 41 ncRNA 151.333-39 chr18 50882066 50882411 + 0.666667 NA intron (NM_002396, intron 1 of 15) AluJb|SINE|Alu 3120 NM_001168335 4200 Hs.233119 NM_002396 ENSG00000082212 ME2 ODS1 malic enzyme 2 protein-coding 160.667-9 chr1 183192217 183192599 + 0.666667 NA intron (NM_005562, intron 1 of 22) intron (NM_005562, intron 1 of 22) 6144 NM_018891 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 174.5-46 chr7 22886478 22886953 + 0.666667 NA Intergenic Intergenic 30102 NR_003075 692210 NR_003075 ENSG00000221740 SNORD93 HBII-336 small nucleolar RNA, C/D box 93 snoRNA 139.333-63 chr3 162546003 162546416 + 0.666667 NA Intergenic L1ME3|LINE|L1 757092 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 170-54 chr4 140859040 140859483 + 0.666667 NA TTS (NM_020724) TTS (NM_020724) -102876 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 183.667-38 chr2 126713145 126713512 + 0.666667 NA Intergenic L1MEd|LINE|L1 57170 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 240-18 chr2 103225512 103226006 + 0.666667 NA Intergenic Intergenic -241330 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 175-66 chr9 89561953 89562392 + 0.666667 NA Intergenic Intergenic -42840 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 113.667-41 chr15 24746541 24746774 + 0.666667 NA Intergenic Intergenic 71263 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 194.167-38 chr7 43069029 43069426 + 0.666667 NA Intergenic L1ME3F|LINE|L1 -43420 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 152.5-72 chr9 75855017 75855310 + 0.666667 NA Intergenic MER5A1|DNA|hAT-Charlie -35481 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 140.667-33 chr15 64302791 64303089 + 0.666667 NA intron (NM_001329606, intron 1 of 11) intron (NM_001329606, intron 1 of 11) 53233 NM_001329606 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 218-4 chr10 51917784 51918176 + 0.666667 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) -218385 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 121.333 chr1 28414115 28414318 + 0.666667 NA intron (NM_001350160, intron 3 of 14) AluSx1|SINE|Alu -23934 NM_023923 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 152.167-40 chr3 54097112 54097718 + 0.666667 NA Intergenic Intergenic -25137 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 215.667-29 chr22 38791571 38792007 + 0.666667 NA intron (NM_005740, intron 1 of 3) AluSx1|SINE|Alu 2354 NM_005740 10126 Hs.632766 NM_005740 ENSG00000100246 DNAL4 MRMV3|PIG27 dynein axonemal light chain 4 protein-coding 131.333-42 chr18 69293884 69294111 + 0.666667 NA Intergenic Intergenic -106891 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 175.167-3 chr1 114746791 114747121 + 0.666667 NA intron (NM_001130523, intron 2 of 19) L3|LINE|CR1 11028 NM_001242893 7812 Hs.69855 NM_007158 ENSG00000009307 CSDE1 D1S155E|UNR cold shock domain containing E1 protein-coding 157.167-10 chr1 209499740 209500255 + 0.666667 NA Intergenic L1MA4|LINE|L1 67864 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 167-53 chr6 74199888 74200223 + 0.666667 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 130604 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 137.667-5 chr1 159024797 159025025 + 0.666667 NA intron (NM_001206567, intron 5 of 10) HERVIP10FH-int|LTR|ERV1 15004 NM_001206567 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 183.5-39 chr20 47570073 47570580 + 0.666667 NA intron (NM_181659, intron 1 of 22) AluJb|SINE|Alu 68439 NM_181659 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 199.833-19 chr22 37657762 37658168 + 0.666667 NA promoter-TSS (NM_020315) promoter-TSS (NM_020315) 412 NR_109952 101927051 NR_109952 ENSG00000233360 LOC101927051 - uncharacterized LOC101927051 ncRNA 124.667-56 chr2 7257024 7257287 + 0.666667 NA Intergenic AluJo|SINE|Alu -164106 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 132.333-53 chr2 49290334 49290642 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -135961 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 123.667-52 chr2 123264322 123264547 + 0.666667 NA Intergenic Intergenic -190953 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 162-29 chr17 53764124 53764554 + 0.666667 NA Intergenic L1M3|LINE|L1 -58588 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 307.833-12 chr8 122581969 122582815 + 0.666667 NA Intergenic Intergenic -13748 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 160-64 chr5 131545931 131546235 + 0.666667 NA intron (NM_016340, intron 6 of 27) intron (NM_016340, intron 6 of 27) 89146 NM_001164386 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 127.333-2 chr1 62167042 62167393 + 0.666667 NA Intergenic AluSx|SINE|Alu -27632 NM_001164835 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 136.333-26 chr13 75286323 75286862 + 0.666667 NA 3' UTR (NM_014832, exon 21 of 21) 3' UTR (NM_014832, exon 21 of 21) 46004 NR_132375 106144536 Hs.591226 NR_132375 LINC01078 - long intergenic non-protein coding RNA 1078 ncRNA 127.833-3 chr1 60091719 60091981 + 0.666667 NA Intergenic Intergenic -18080 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 144.667-13 chr1 233112475 233112902 + 0.666667 NA intron (NM_014801, intron 21 of 33) intron (NM_014801, intron 21 of 33) 161846 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 130-73 chr4 38465624 38465819 + 0.666667 NA intron (NR_110951, intron 2 of 7) L1MC1|LINE|L1 -44046 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 114.333-48 chr16 83380513 83380738 + 0.666667 NA intron (NM_001220489, intron 5 of 12) MLT1J|LTR|ERVL-MaLR -127721 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 258.667-6 chr12 18008508 18008999 + 0.666667 NA Intergenic Intergenic 81440 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 286.667-20 chr9 113835369 113836084 + 0.666667 NA Intergenic Intergenic -40556 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 138-52 chr2 61071895 61072321 + 0.666667 NA intron (NM_001330432, intron 4 of 20) AluJo|SINE|Alu 5899 NM_001330436 84542 Hs.468653 NM_032506 ENSG00000162929 KIAA1841 - KIAA1841 protein-coding 188.333-19 chr16 46702085 46702479 + 0.666667 NA TTS (NM_001308301) TTS (NM_001308301) 12623 NM_014321 23594 Hs.49760 NM_014321 ENSG00000091651 ORC6 ORC6L origin recognition complex subunit 6 protein-coding 160.667-57 chr3 150917202 150917680 + 0.666667 NA Intergenic Intergenic -12002 NM_001351281 646951 Hs.380222 NM_001351281 MINDY4B C3orf76|FAM188B2 MINDY family member 4B protein-coding 116.333-89 chr6 11185463 11185740 + 0.666667 NA exon (NM_001142393, exon 8 of 8) exon (NM_001142393, exon 8 of 8) 47067 NM_182966 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 168-42 chr3 132909761 132910148 + 0.666667 NA Intergenic Intergenic -128334 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 161.333-14 chr12 32606745 32607006 + 0.666667 NA intron (NM_001370297, intron 5 of 14) intron (NM_001370297, intron 5 of 14) -72325 NM_001278466 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 230.333-19 chr3 187012432 187013089 + 0.666667 NA intron (NM_173216, intron 2 of 7) intron (NM_173216, intron 2 of 7) -9095 NM_003032 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 155.333-33 chr15 56228515 56228827 + 0.666667 NA intron (NM_001370561, intron 4 of 11) intron (NM_001370561, intron 4 of 11) 15208 NM_001368073 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 174.833-32 chr3 99664506 99664853 + 0.666667 NA intron (NM_020351, intron 1 of 3) intron (NM_020351, intron 1 of 3) 26085 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 198.333-11 chr14 60239562 60239992 + 0.666667 NA Intergenic AluSc|SINE|Alu -5973 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 243.833-16 chr3 94331247 94331682 + 0.666667 NA Intergenic Tigger18a|DNA|TcMar-Tigger 268403 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 145.667-27 chr14 37852823 37853118 + 0.666667 NA Intergenic Intergenic 49154 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 151-23 chr14 86073935 86074189 + 0.666667 NA intron (NR_110155, intron 2 of 3) intron (NR_110155, intron 2 of 3) 139384 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 113.833-7 chr10 13116645 13116863 + 0.666667 NA intron (NM_001008213, intron 7 of 15) intron (NM_001008213, intron 7 of 15) 16591 NM_001008212 10133 Hs.332706 NM_021980 ENSG00000123240 OPTN ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP optineurin protein-coding 117-85 chr5 11141662 11141915 + 0.666667 NA intron (NM_001288715, intron 11 of 20) intron (NM_001288715, intron 11 of 20) -380554 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 134-8 chr1 102849893 102850185 + 0.666667 NA Intergenic L1MD|LINE|L1 258457 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 145.667-37 chr15 91988078 91988461 + 0.666667 NA intron (NR_135775, intron 2 of 10) AluJb|SINE|Alu 133965 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 142.167-70 chr6 96609252 96609588 + 0.666667 NA intron (NM_001322467, intron 5 of 6) intron (NM_001322467, intron 5 of 6) 46295 NM_001322467 9457 Hs.632608 NM_020482 ENSG00000112214 FHL5 1700027G07Rik|ACT|FHL-5|dJ393D12.2 four and a half LIM domains 5 protein-coding 150-32 chr19 42874693 42874978 + 0.666667 NA intron (NM_001184826, intron 2 of 5) intron (NM_001184826, intron 2 of 5) 4878 NM_001184826 5669 Hs.709192 NM_006905 ENSG00000231924 PSG1 B1G1|CD66f|DHFRP2|FL-NCA-1/2|PBG1|PS-beta-C/D|PS-beta-G-1|PSBG-1|PSBG1|PSG95|PSGGA|PSGIIA|SP1 pregnancy specific beta-1-glycoprotein 1 protein-coding 123.667-9 chr10 18455262 18455541 + 0.666667 NA intron (NM_201593, intron 3 of 13) intron (NM_201593, intron 3 of 13) 54826 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 261.333-30 chr8 122426978 122427542 + 0.666667 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 141384 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 135.833-34 chr2 83929743 83930047 + 0.666667 NA Intergenic L1M3|LINE|L1 -360787 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 156-7 chr10 32260718 32261001 + 0.666667 NA Intergenic L1MB1|LINE|L1 86299 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 133.333-120 chr8 113847240 113847597 + 0.666667 NA Intergenic L1PREC2|LINE|L1 -410479 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 160.833-29 chr21 31463896 31464175 + 0.666667 NA 5' UTR (NM_001353692, exon 2 of 28) 5' UTR (NM_001353692, exon 2 of 28) 95052 NM_001353690 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 203.5-34 chr5 88809943 88810299 + 0.666667 NA intron (NM_001131005, intron 3 of 10) intron (NM_001131005, intron 3 of 10) 13806 NM_001193348 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 143.167-74 chr7 1463444 1463741 + 0.666667 NA Intergenic Intergenic -4122 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 191-35 chr2 214860940 214861439 + 0.666667 NA intron (NR_110292, intron 2 of 3) L1M1|LINE|L1 14242 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 135-54 chr22 20855347 20855688 + 0.666667 NA intron (NM_058004, intron 1 of 54) MER68B|LTR|ERVL 3294 NM_058004 5297 Hs.529438 NM_002650 ENSG00000241973 PI4KA PI4K-ALPHA|PIK4CA|PMGYCHA|pi4K230 phosphatidylinositol 4-kinase alpha protein-coding 262-5 chr10 107160990 107161434 + 0.666667 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 3494 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 180.5-42 chr5 30215605 30216248 + 0.666667 NA Intergenic Intergenic 335366 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 144.667-104 chrX 68076796 68077158 + 0.666667 NA intron (NM_002547, intron 19 of 24) L1ME1|LINE|L1 356518 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 277 chr11 57015778 57016560 + 0.666667 NA Intergenic L1MDa|LINE|L1 -21365 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 154.667-15 chr12 21953891 21954210 + 0.666667 NA Intergenic L1ME2|LINE|L1 -17356 NM_020297 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 210.333-37 chr7 4194476 4194901 + 0.666667 NA intron (NM_001079653, intron 9 of 19) MLT2A1|LTR|ERVL -59851 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 185.667-48 chr6 113487592 113487942 + 0.666667 NA Intergenic Intergenic -54320 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 170.667 chr1 77650085 77650519 + 0.666667 NA intron (NM_001308237, intron 1 of 13) L1MB7|LINE|L1 32356 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 168.333-53 chr8 14440970 14441405 + 0.666667 NA intron (NM_001322881, intron 2 of 6) MER101-int|LTR|ERV1 412323 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 213.667-23 chr22 40645001 40645587 + 0.666667 NA Intergenic Intergenic -8575 NM_020831 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 170.333-11 chr10 73047395 73047885 + 0.666667 NA intron (NM_001017962, intron 7 of 14) intron (NM_001017962, intron 7 of 14) 49334 NM_001017962 5033 Hs.500047 NM_000917 ENSG00000122884 P4HA1 P4HA prolyl 4-hydroxylase subunit alpha 1 protein-coding 157.333-33 chr2 22453984 22454432 + 0.666667 NA Intergenic Intergenic -82271 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 138.333-9 chr1 164404029 164404385 + 0.666667 NA Intergenic Intergenic -155153 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 192.333-21 chr2 46166472 46166941 + 0.666667 NA intron (NM_005400, intron 14 of 14) MIRb|SINE|MIR -130701 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 180.333-38 chr20 44788519 44789051 + 0.666667 NA intron (NM_001205317, intron 1 of 5) intron (NM_001205317, intron 1 of 5) 21761 NM_001205317 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 132.667-34 chr14 79927302 79927593 + 0.666667 NA Intergenic MLT2D|LTR|ERVL -283972 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 195.667-8 chr10 98579867 98580326 + 0.666667 NA intron (NM_021828, intron 9 of 11) HAL1ME|LINE|L1 -133133 NM_182639 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 134.667-51 chr2 114453182 114453418 + 0.666667 NA intron (NM_001321910, intron 1 of 26) intron (NM_001321910, intron 1 of 26) -8277 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 154.833-37 chr20 55169611 55169981 + 0.666667 NA Intergenic Intergenic -253247 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 202-19 chr2 72533339 72533726 + 0.666667 NA intron (NR_135774, intron 8 of 19) intron (NR_135774, intron 8 of 19) 292501 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 206.667-54 chr9 137261174 137261632 + 0.666667 NA intron (NM_015456, intron 4 of 12) AluSx1|SINE|Alu 6076 NM_015456 25920 Hs.521809 NM_015456 ENSG00000188986 NELFB COBRA1|NELF-B negative elongation factor complex member B protein-coding 137.667-76 chr4 77761282 77761627 + 0.666667 NA intron (NM_001365006, intron 4 of 11) L1MEd|LINE|L1 57610 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 229.667-19 chr2 144125047 144125629 + 0.666667 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 86241 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 127.333-92 chr5 148995533 148995822 + 0.666667 NA 3' UTR (NM_024577, exon 17 of 17) 3' UTR (NM_024577, exon 17 of 17) 66732 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 117.833-17 chr12 28841958 28842306 + 0.666667 NA Intergenic L1M5|LINE|L1 -307146 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 131 chr1 35507364 35507612 + 0.666667 NA intron (NM_024874, intron 2 of 20) intron (NM_024874, intron 2 of 20) 49915 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR|AAVRL KIAA0319 like protein-coding 125.333-6 chr1 160155008 160155352 + 0.666667 NA exon (NM_144699, exon 3 of 22) exon (NM_144699, exon 3 of 22) 3618 NM_144699 480 Hs.662219 NM_144699 ENSG00000132681 ATP1A4 ATP1A1|ATP1AL2 ATPase Na+/K+ transporting subunit alpha 4 protein-coding 125.667-98 chr5 115659697 115659973 + 0.666667 NA intron (NR_104674, intron 3 of 4) L1M5|LINE|L1 12817 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 240.833-23 chr6 127482163 127482860 + 0.666667 NA intron (NM_001012279, intron 5 of 11) intron (NM_001012279, intron 5 of 11) -23122 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 113.333-23 chr11 42836332 42836558 + 0.666667 NA Intergenic Intergenic 432924 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 171.667-74 chr6 140491291 140491725 + 0.666667 NA Intergenic L1ME1|LINE|L1 -192306 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 114.833-21 chr15 57459188 57459432 + 0.666667 NA intron (NM_032866, intron 7 of 18) intron (NM_032866, intron 7 of 18) 82805 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 145.334 chr13 52135327 52135865 + 0.666667 NA intron (NM_002498, intron 14 of 15) L1MB3|LINE|L1 -6523 NM_199289 341676 Hs.672144 NM_199289 ENSG00000197168 NEK5 - NIMA related kinase 5 protein-coding 129.333-80 chr6 115638582 115639012 + 0.666667 NA intron (NR_134602, intron 1 of 3) L1MC2|LINE|L1 5038 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 134.167-81 chr8 80042236 80042739 + 0.666667 NA intron (NM_001025253, intron 7 of 7) intron (NM_001025253, intron 7 of 7) -12228 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 130.333-78 chr5 161275408 161275704 + 0.666667 NA Intergenic Intergenic 272568 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 146.333-85 chr6 91262481 91262709 + 0.666667 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -259065 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 116.333-35 chr12 126894196 126894566 + 0.666667 NA Intergenic MER102a|DNA|hAT-Charlie -19691 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 205-19 chr2 57357502 57358057 + 0.666667 NA Intergenic MIR3|SINE|MIR -549872 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 136.333-39 chr17 63073844 63074167 + 0.666667 NA exon (NM_025185, exon 3 of 26) exon (NM_025185, exon 3 of 26) 107770 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 125-45 chr2 154638195 154638711 + 0.666667 NA Intergenic MIR|SINE|MIR -60128 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 149.333-30 chr14 46736896 46737131 + 0.666667 NA Intergenic L1PA13|LINE|L1 -85232 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 240.167-16 chr6 77941678 77942212 + 0.666667 NA Intergenic Intergenic 288906 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 166.333-26 chr16 12725140 12725558 + 0.666667 NA intron (NM_018340, intron 2 of 3) AluSz6|SINE|Alu 5028 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 125.5-77 chr8 23855922 23856139 + 0.666667 NA Intergenic Intergenic -1224 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 122.333-44 chr16 60332784 60333106 + 0.666667 NA Intergenic Intergenic 26848 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 150.667-32 chr14 66565639 66566161 + 0.666667 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 58493 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 262-7 chr13 81229789 81230288 + 0.666667 NA Intergenic Intergenic -3055 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 195.833-19 chr20 50101227 50101666 + 0.666667 NA intron (NM_001282579, intron 1 of 4) AluSx|SINE|Alu 11704 NM_001282577 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 211.333-33 chr3 4288157 4288566 + 0.666667 NA Intergenic Intergenic -14943 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 125-49 chr20 55937250 55937626 + 0.666667 NA Intergenic Intergenic 68081 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 136.333-86 chr6 151030925 151031183 + 0.666667 NA intron (NM_001350486, intron 24 of 27) intron (NM_001350486, intron 24 of 27) 24046 NM_001350490 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 174.667-32 chr2 39415652 39416190 + 0.666667 NA intron (NM_003618, intron 1 of 33) AluSx1|SINE|Alu 21364 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 177-51 chr4 171671151 171671636 + 0.666667 NA Intergenic Intergenic -32630 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 177-52 chr4 172398898 172399260 + 0.666667 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 289838 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 279.833 chr1 196117404 196118112 + 0.666667 NA Intergenic L1PA17|LINE|L1 -29043 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 259.167-19 chr8 139867601 139868309 + 0.666667 NA intron (NM_001160372, intron 21 of 22) L1MC4|LINE|L1 -164832 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 172.333-2 chr1 68783840 68784135 + 0.666667 NA Intergenic Intergenic -271911 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 134.333-42 chr16 69001370 69001674 + 0.666667 NA intron (NM_024562, intron 15 of 17) HERV35I-int|LTR|ERV1 -104131 NM_001199280 3038 Hs.592069 NM_005329 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 151.333-75 chr5 119561312 119561761 + 0.666667 NA Intergenic L1PB2|LINE|L1 -68022 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 164.333-39 chr22 49193849 49194319 + 0.666667 NA Intergenic Intergenic 327314 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 129.333-35 chr15 63085677 63085945 + 0.666667 NA Intergenic Intergenic -36050 NM_032857 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 267.334 chr1 26859986 26860827 + 0.666667 NA Intergenic MIR|SINE|MIR -2743 NM_006142 2810 Hs.523718 NM_006142 ENSG00000175793 SFN YWHAS stratifin protein-coding 208.667-44 chr8 124989670 124990323 + 0.666667 NA Intergenic ERVL-int|LTR|ERVL 8202 NR_134457 105375744 Hs.575534 NR_134457 ENSG00000253513 LOC105375744 - uncharacterized LOC105375744 ncRNA 131.333-21 chr12 80258565 80258798 + 0.666667 NA intron (NM_001368062, intron 23 of 62) intron (NM_001368062, intron 23 of 62) 49228 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 151.667-46 chr2 148674876 148675269 + 0.666667 NA intron (NM_015630, intron 1 of 13) L1MC4|LINE|L1 30321 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 183.167-28 chr20 35735499 35736208 + 0.666667 NA intron (NR_136587, intron 4 of 4) intron (NR_136587, intron 4 of 4) 6407 NR_040723 9584 Hs.282901 NM_004902 ENSG00000131051 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 279.667-4 chr14 52863563 52864405 + 0.666667 NA intron (NM_001134999, intron 12 of 15) intron (NM_001134999, intron 12 of 15) -72377 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 140-14 chr11 67154574 67154807 + 0.666667 NA intron (NR_027473, intron 2 of 20) AluSq2|SINE|Alu 35427 NR_027473 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 156-92 chr8 131853053 131853439 + 0.666667 NA Intergenic L1PA7|LINE|L1 -50847 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 126.333-94 chr6 120719483 120719732 + 0.666667 NA Intergenic Intergenic 614873 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 123.333-57 chr2 156056169 156056429 + 0.666667 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 198632 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 130-91 chr6 155508100 155508376 + 0.666667 NA Intergenic Intergenic -6606 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 123.667-70 chr3 100978356 100978785 + 0.666667 NA intron (NM_001349332, intron 1 of 35) intron (NM_001349332, intron 1 of 35) 14920 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 130.667-28 chr14 70168882 70169125 + 0.666667 NA intron (NM_033262, intron 1 of 7) intron (NM_033262, intron 1 of 7) -18105 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 123.667-34 chr14 88037779 88038073 + 0.666667 NA intron (NR_046094, intron 2 of 3) MLT1J1|LTR|ERVL-MaLR -11614 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 116-48 chr2 75980349 75980640 + 0.666667 NA Intergenic LTR80A|LTR|ERVL -269579 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 206.833-2 chr13 61641022 61641415 + 0.666667 NA Intergenic L1MA6|LINE|L1 -213272 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 177.333-29 chr18 51497288 51497686 + 0.666667 NA intron (NR_040074, intron 1 of 2) intron (NR_040074, intron 1 of 2) 105445 NR_040075 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 151.833-9 chr10 99513365 99513709 + 0.666667 NA Intergenic Intergenic 17640 NR_120618 101927324 Hs.642588 NR_120618 ENSG00000257582 LINC01475 - long intergenic non-protein coding RNA 1475 ncRNA 124.333-67 chr3 100947863 100948212 + 0.666667 NA intron (NM_001349332, intron 1 of 35) L2c|LINE|L2 45453 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 131.167 chr1 17400764 17401112 + 0.666667 NA intron (NM_207421, intron 15 of 15).2 intron (NM_207421, intron 15 of 15).2 28742 NM_207421 353238 Hs.531598 NM_207421 ENSG00000276747 PADI6 PREMBL2|hPADVI peptidyl arginine deiminase 6 protein-coding 185.833-38 chr9 74943360 74943783 + 0.666667 NA Intergenic Intergenic 9341 NM_017998 55071 Hs.532296 NM_017998 ENSG00000135045 C9orf40 - chromosome 9 open reading frame 40 protein-coding 149.333-47 chr2 54055438 54055833 + 0.666667 NA intron (NM_001320586, intron 3 of 6) MIRc|SINE|MIR -59980 NM_001320590 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 161.167-6 chr1 236982979 236983325 + 0.666667 NA Intergenic Intergenic 21289 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 171-62 chr8 84350973 84351246 + 0.666667 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -64375 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 155.333-86 chr5 120806437 120806713 + 0.666667 NA Intergenic Intergenic 275111 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 146.333-3 chr1 157025352 157025725 + 0.666667 NA intron (NM_014784, intron 1 of 39) intron (NM_014784, intron 1 of 39) 20204 NM_014784 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding 197.333-57 chr7 78836768 78837225 + 0.666667 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -171992 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 117.833-68 chr6 61653940 61654264 + 0.666667 NA intron (NR_146873, intron 10 of 11) intron (NR_146873, intron 10 of 11) 79972 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 133.833-46 chr3 96324521 96324820 + 0.666667 NA Intergenic Intergenic -35294 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 188.5-4 chr1 103946655 103947016 + 0.666667 NA Intergenic Intergenic -126188 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 157-72 chr6 86319492 86319731 + 0.666667 NA Intergenic L1MA2|LINE|L1 -617917 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 179.667-22 chr18 57169178 57169582 + 0.666667 NA TTS (NR_149129) TTS (NR_149129) 1814 NR_149129 105372138 Hs.574448 NR_149129 ENSG00000267726 LINC02565 - long intergenic non-protein coding RNA 2565 ncRNA 151.5-5 chr1 165694341 165694632 + 0.666667 NA intron (NM_001365774, intron 2 of 10) L1MA8|LINE|L1 4076 NM_001365774 223 Hs.2533 NM_000696 ENSG00000143149 ALDH9A1 ALDH4|ALDH7|ALDH9|E3|TMABADH aldehyde dehydrogenase 9 family member A1 protein-coding 130.167-24 chr17 71533047 71533336 + 0.666667 NA Intergenic Intergenic -331012 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 115.333-96 chr6 151973997 151974247 + 0.666667 NA intron (NM_001122741, intron 5 of 8) intron (NM_001122741, intron 5 of 8) 165015 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 317.333-11 chr8 78027212 78028025 + 0.666667 NA Intergenic L1M5|LINE|L1 -488722 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 187-49 chr9 69004904 69005218 + 0.666667 NA intron (NM_003558, intron 15 of 15) intron (NM_003558, intron 15 of 15) 9062 NM_002732 5568 Hs.158029 NM_002732 ENSG00000165059 PRKACG BDPLT19|KAPG|PKACg protein kinase cAMP-activated catalytic subunit gamma protein-coding 139.167-47 chr20 7705309 7705705 + 0.666667 NA Intergenic AluJb|SINE|Alu 234951 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 129.667-93 chr7 20373237 20373572 + 0.666667 NA intron (NM_002214, intron 3 of 13) intron (NM_002214, intron 3 of 13) -41642 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 191.5-44 chr6 3086813 3087207 + 0.666667 NA intron (NM_001354930, intron 6 of 10) L1MDa|LINE|L1 18516 NM_001354930 8737 Hs.519842 NM_003804 ENSG00000137275 RIPK1 IMD57|RIP|RIP-1|RIP1 receptor interacting serine/threonine kinase 1 protein-coding 198.5-19 chr18 34438204 34438586 + 0.666667 NA Intergenic Intergenic -54895 NM_032975 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 119.667-27 chr16 56174635 56174908 + 0.666667 NA intron (NR_027078, intron 2 of 4) MLT1D|LTR|ERVL-MaLR 16323 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 130.667-36 chr18 5462245 5462581 + 0.666667 NA intron (NM_001281535, intron 5 of 21) intron (NM_001281535, intron 5 of 21) 78143 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 180.833-23 chr20 17540391 17540701 + 0.666667 NA intron (NM_001278608, intron 3 of 9) intron (NM_001278608, intron 3 of 9) -9167 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 233 chr1 68071820 68072526 + 0.666667 NA intron (NR_040077, intron 3 of 9) L1MC3|LINE|L1 -20542 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 219.333-42 chr8 114669045 114669683 + 0.666667 NA Intergenic MER4D1|LTR|ERV1 998649 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 266.333-9 chr3 84260064 84260654 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR 609216 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 163.333-68 chr6 24960012 24960364 + 0.666667 NA intron (NM_001286446, intron 1 of 13) MLT1A1|LTR|ERVL-MaLR -24228 NM_001286445 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 144-13 chr12 44614050 44614526 + 0.666667 NA intron (NM_006159, intron 14 of 20) intron (NM_006159, intron 14 of 20) 261373 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 175.833-10 chr14 45034608 45035114 + 0.666667 NA intron (NR_131765, intron 11 of 19) L1MEc|LINE|L1 -49255 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 233-25 chr9 89709696 89710157 + 0.666667 NA intron (NR_024280, intron 5 of 5) intron (NR_024280, intron 5 of 5) 70143 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 181.833-9 chr11 116164788 116165303 + 0.666667 NA Intergenic Intergenic -404845 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 114.167-34 chr14 68634971 68635323 + 0.666667 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) -6360 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 235.833-11 chr2 184383478 184383891 + 0.666667 NA Intergenic Intergenic 4709 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 122.333-88 chr4 131483614 131483888 + 0.666667 NA Intergenic AluJo|SINE|Alu -281087 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 286.5-3 chr10 114264898 114265584 + 0.666667 NA intron (NM_001272046, intron 5 of 13) L1MB7|LINE|L1 25627 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 157.167-12 chr10 14304692 14305106 + 0.666667 NA intron (NR_134578, intron 2 of 3) LTR16C|LTR|ERVL 25985 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 126.5-68 chr4 111352778 111353024 + 0.666667 NA Intergenic Intergenic -492254 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 180.333-54 chr7 35311022 35311363 + 0.666667 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat -2663 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 150.667-7 chr1 117514958 117515226 + 0.666667 NA intron (NM_006699, intron 12 of 12) intron (NM_006699, intron 12 of 12) 90678 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 127-42 chr18 8502850 8503104 + 0.666667 NA Intergenic Tigger4a|DNA|TcMar-Tigger -106468 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 132.5-90 chr7 46731729 46732125 + 0.666667 NA Intergenic Intergenic -34805 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 206-10 chr14 87848981 87849579 + 0.666667 NA Intergenic CR1-16_AMi|LINE|CR1 143902 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 149.667-22 chr14 65006406 65006754 + 0.666667 NA intron (NM_197957, intron 3 of 3) intron (NM_197957, intron 3 of 3) 19685 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 273.333-4 chr14 66886895 66887339 + 0.666667 NA intron (NM_001024218, intron 5 of 21) L1MB4|LINE|L1 -302323 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 162.667-65 chr5 82761494 82761890 + 0.666667 NA Intergenic Intergenic -78463 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 145-94 chr8 135038020 135038546 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR 188348 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 171.833 chr1 57468114 57468478 + 0.666667 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -43375 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 125.667-33 chr14 62042435 62042704 + 0.666667 NA intron (NM_001367661, intron 4 of 8) L1MEc|LINE|L1 -74788 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 119.5-36 chr16 24652521 24652723 + 0.666667 NA intron (NM_001351850, intron 2 of 23) intron (NM_001351850, intron 2 of 23) 18440 NR_122072 400511 Hs.592028 NR_122072 ENSG00000224310 LINC01567 LOCCS long intergenic non-protein coding RNA 1567 ncRNA 170.333-71 chr8 46916282 46916685 + 0.666667 NA Intergenic Intergenic 75597 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 138.5-2 chr1 62902949 62903363 + 0.666667 NA Intergenic Intergenic 107769 NR_146607 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 137.667-54 chr2 76370255 76370608 + 0.666667 NA Intergenic Intergenic -615534 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 176.333-25 chr14 72435112 72435720 + 0.666667 NA intron (NM_001370288, intron 3 of 16) MLT1J|LTR|ERVL-MaLR -81404 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 144.167-50 chr3 196430829 196431092 + 0.666667 NA promoter-TSS (NR_046745) promoter-TSS (NR_046745) -425 NR_046745 100874034 Hs.617990 NR_046745 UBXN7-AS1 - UBXN7 antisense RNA 1 ncRNA 163.833-51 chr7 10514254 10514787 + 0.666667 NA intron (NR_147499, intron 2 of 2) intron (NR_147499, intron 2 of 2) -188156 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 225.167-8 chr13 65017207 65017691 + 0.666667 NA Intergenic L1MC3|LINE|L1 -848598 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 121.5-22 chr11 104043200 104043666 + 0.666667 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) 6793 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 131.5-34 chr2 82306069 82306337 + 0.666667 NA Intergenic Intergenic -550600 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 207.833-22 chr3 39165695 39166067 + 0.666667 NA Intergenic Intergenic -11240 NM_001320560 64651 Hs.370950 NM_033027 ENSG00000144655 CSRNP1 AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1 cysteine and serine rich nuclear protein 1 protein-coding 145-47 chr2 176620154 176620527 + 0.666667 NA Intergenic Intergenic 17234 NR_040001 375295 Hs.636452 NR_040001 LINC01116 TALNEC2 long intergenic non-protein coding RNA 1116 ncRNA 121.333-83 chr5 54429422 54429720 + 0.666667 NA Intergenic Intergenic -26128 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 131.667-15 chr10 105200342 105200586 + 0.666667 NA intron (NM_014978, intron 15 of 26) intron (NM_014978, intron 15 of 26) -534248 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 312-3 chr13 94641656 94642266 + 0.666667 NA Intergenic Intergenic 40104 NM_180989 160897 Hs.439363 NM_180989 ENSG00000152749 GPR180 ITR G protein-coupled receptor 180 protein-coding 188.333-62 chr8 140409023 140409449 + 0.666667 NA intron (NM_001321646, intron 4 of 21) L1MC4|LINE|L1 48508 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 126.833-64 chr8 39890385 39890663 + 0.666667 NA Intergenic Intergenic -23367 NM_002164 3620 Hs.840 NM_002164 ENSG00000131203 IDO1 IDO|IDO-1|INDO indoleamine 2,3-dioxygenase 1 protein-coding 137.5-71 chr4 79998839 79999078 + 0.666667 NA intron (NM_001286781, intron 12 of 16) intron (NM_001286781, intron 12 of 16) 74271 NM_001286781 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 223.667-18 chr2 235172946 235173458 + 0.666667 NA Intergenic L1MB2|LINE|L1 145467 NM_001371306 206.333-20 chr21 27423167 27423748 + 0.666667 NA Intergenic Intergenic -298922 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 145.833-52 chr3 164263703 164263968 + 0.666667 NA Intergenic Intergenic -92279 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 265.333-22 chr8 121877886 121878553 + 0.666667 NA Intergenic Intergenic -236779 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 120-54 chr2 54000540 54000854 + 0.666667 NA intron (NM_001320587, intron 2 of 5) MLT1I|LTR|ERVL-MaLR 29584 NM_001320586 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 117.167-58 chr22 48411928 48412127 + 0.666667 NA Intergenic AluSq2|SINE|Alu -77526 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 124-41 chr16 73292060 73292505 + 0.666667 NA Intergenic Intergenic -94523 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 213.167-10 chr17 43060502 43060881 + 0.666667 NA intron (NR_027676, intron 18 of 22) AluSz|SINE|Alu 35460 NM_005440 8153 Hs.603111 NM_005440 ENSG00000108830 RND2 ARHN|RHO7|RhoN Rho family GTPase 2 protein-coding 232.5-30 chr4 159653472 159653919 + 0.666667 NA Intergenic Intergenic 124089 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 188-56 chr6 87429573 87429875 + 0.666667 NA intron (NM_001031743, intron 9 of 12) intron (NM_001031743, intron 9 of 12) 21752 NM_001031743 154313 Hs.82921 NM_178823 ENSG00000272514 CFAP206 C6orf165|dJ382I10.1 cilia and flagella associated protein 206 protein-coding 281.333 chr1 65403160 65403754 + 0.666667 NA intron (NM_001256864, intron 15 of 18) L2a|LINE|L2 -17195 NM_001003680 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 197.333-48 chr5 79044229 79044713 + 0.666667 NA non-coding (NR_104002, exon 3 of 12) non-coding (NR_104002, exon 3 of 12) 25203 NR_104003 29958 Hs.655653 NM_013391 ENSG00000132837 DMGDH DMGDHD|ME2GLYDH dimethylglycine dehydrogenase protein-coding 196.167-26 chr4 113103425 113103780 + 0.666667 NA intron (NM_001354232, intron 1 of 46) intron (NM_001354232, intron 1 of 46) -3261 NR_031641 100302188 NR_031641 ENSG00000283193 MIR1243 MIRN1243|hsa-mir-1243 microRNA 1243 ncRNA 160.667-17 chr10 116520926 116521313 + 0.666667 NA Intergenic Intergenic -24812 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 137.5-63 chr3 182221454 182222022 + 0.666667 NA Intergenic Intergenic 264624 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 166-34 chr2 74936642 74937080 + 0.666667 NA intron (NR_125792, intron 4 of 4) intron (NR_125792, intron 4 of 4) -21782 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 150.667-97 chr9 28032483 28032792 + 0.666667 NA intron (NM_152570, intron 5 of 6) MIRc|SINE|MIR -458771 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 148.333-41 chr2 42176798 42177218 + 0.666667 NA intron (NM_001145076, intron 1 of 21) AluSz|SINE|Alu -6777 NR_110584 102723824 Hs.639826 NR_110584 LOC102723824 - uncharacterized LOC102723824 ncRNA 172.667-23 chr14 53517309 53517784 + 0.666667 NA Intergenic MLT2F|LTR|ERVL 364192 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 168.833-11 chr12 15487777 15488174 + 0.666667 NA intron (NM_030667, intron 2 of 26) L1MCc|LINE|L1 -58636 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 139.167-71 chr9 27989735 27990179 + 0.666667 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -416091 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 150.5-52 chr4 16804209 16804588 + 0.666667 NA intron (NM_001304435, intron 1 of 7) intron (NM_001304435, intron 1 of 7) 94247 NM_001290 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 164.667-73 chr8 86770224 86770549 + 0.666667 NA Intergenic Intergenic -26711 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 156.833-61 chr8 139109895 139110259 + 0.666667 NA Intergenic Intergenic -196036 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 199.667-48 chr5 13881072 13881633 + 0.666667 NA intron (NM_001369, intron 21 of 78) L1M3de|LINE|L1 63128 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 119-78 chr4 179894636 179894850 + 0.666667 NA Intergenic Intergenic 1264406 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 217.833-19 chr5 92605913 92606515 + 0.666667 NA Intergenic Intergenic 965129 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 168-39 chr3 55560497 55560964 + 0.666667 NA intron (NM_015576, intron 16 of 16) MLT1H1|LTR|ERVL-MaLR -73088 NM_003392 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 130.333-58 chr3 6759434 6759775 + 0.666667 NA intron (NR_110125, intron 2 of 3) intron (NR_110125, intron 2 of 3) 45845 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 164-56 chr5 99654467 99654904 + 0.666667 NA Intergenic Intergenic 120695 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 168.333-34 chr21 21691511 21691849 + 0.666667 NA Intergenic Intergenic 45639 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 176.833-7 chr12 63829294 63829605 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 5786 NR_162118 113218505 NR_162118 MIR10527 - microRNA 10527 ncRNA 150-6 chr10 49156651 49157034 + 0.666667 NA intron (NM_001288742, intron 4 of 4) intron (NM_001288742, intron 4 of 4) -22822 NM_001164484 170370 Hs.646291 NM_001164484 ENSG00000172538 FAM170B C10orf73 family with sequence similarity 170 member B protein-coding 120.667-26 chr12 18242712 18242913 + 0.666667 NA Intergenic Intergenic -18728 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 201-19 chr17 51320132 51320604 + 0.666667 NA intron (NR_110751, intron 5 of 5) intron (NR_110751, intron 5 of 5) 14794 NR_110751 101927274 Hs.591168 NR_110751 ENSG00000249383 LINC02071 - long intergenic non-protein coding RNA 2071 ncRNA 121.833-71 chr7 96614432 96614743 + 0.666667 NA intron (NR_163950, intron 3 of 6) L1MEi|LINE|L1 49751 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 131-7 chr10 129284341 129284681 + 0.666667 NA Intergenic L1ME1|LINE|L1 -182730 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 211.833-18 chr3 172501163 172501534 + 0.666667 NA Intergenic L1MC3|LINE|L1 22082 NM_001190942 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL TNF superfamily member 10 protein-coding 146.333-19 chr11 91661772 91662315 + 0.666667 NA Intergenic Intergenic -562991 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 177.333-5 chr10 15908662 15909144 + 0.666667 NA Intergenic Intergenic -48370 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 136.833-49 chr4 85417094 85417494 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR -57856 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 142.167-63 chr5 120009262 120009773 + 0.666667 NA Intergenic Intergenic 379958 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 253.167-6 chr2 176684471 176685064 + 0.666667 NA Intergenic Intergenic 47013 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 122-64 chr4 73380229 73380493 + 0.666667 NA Intergenic Intergenic -23926 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 169-9 chr11 56956459 56956836 + 0.666667 NA Intergenic Intergenic -32267 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 130.667-16 chr12 15461330 15461671 + 0.666667 NA intron (NM_030667, intron 1 of 26) MER4E|LTR|ERV1 -85111 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 243.833-9 chr14 47421934 47422313 + 0.666667 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -78877 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 120.167-54 chr3 15186159 15186436 + 0.666667 NA intron (NR_027927, intron 1 of 4) intron (NR_027927, intron 1 of 4) 19662 NR_027927 344875 Hs.722756 NR_027927 ENSG00000230524 COL6A4P1 COL6A4|COL6A4P|DIVA|DVWA|VWA6 collagen type VI alpha 4 pseudogene 1 pseudo 173.833-22 chr14 97243965 97244315 + 0.666667 NA Intergenic Intergenic 89283 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 113.833-39 chr2 106271371 106271600 + 0.666667 NA Intergenic MER21C|LTR|ERVL -77146 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 224.333-37 chr9 96028198 96028741 + 0.666667 NA Intergenic Intergenic -6658 NR_024129 100188953 Hs.434310 NR_024129 ENSG00000225194 LINC00092 NCRNA00092 long intergenic non-protein coding RNA 92 ncRNA 227.333-22 chr20 49056942 49057404 + 0.666667 NA intron (NM_001362762, intron 1 of 24) intron (NM_001362762, intron 1 of 24) 10861 NM_001362762 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 125.833-38 chr2 58941402 58941673 + 0.666667 NA intron (NR_033873, intron 6 of 13) L1MEc|LINE|L1 -276171 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 183.167-17 chr16 8321668 8322239 + 0.666667 NA Intergenic L1MB1|LINE|L1 267885 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 158.333-5 chr1 166304662 166305023 + 0.666667 NA Intergenic Intergenic -138087 NR_135199 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 150.333-69 chr3 89521466 89521849 + 0.666667 NA Intergenic MSTD|LTR|ERVL-MaLR 414036 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 168-80 chr9 31753611 31754103 + 0.666667 NA Intergenic Intergenic -372367 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 143.833-4 chr10 43011929 43012186 + 0.666667 NA Intergenic L1M4|LINE|L1 14494 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 229.167-4 chr10 28596921 28597342 + 0.666667 NA intron (NM_100264, intron 7 of 13) intron (NM_100264, intron 7 of 13) 64013 NM_100486 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 146.667-20 chr11 124022319 124022740 + 0.666667 NA promoter-TSS (NM_001001953) promoter-TSS (NM_001001953) -484 NM_001001953 219870 Hs.553636 NM_001001953 ENSG00000236981 OR10G9 OR10G10P olfactory receptor family 10 subfamily G member 9 protein-coding 165.833-30 chr2 21437673 21437973 + 0.666667 NA Intergenic Intergenic 272829 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 180.833-3 chr1 221482039 221482661 + 0.666667 NA Intergenic MIRb|SINE|MIR -146054 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 251.5-10 chr2 36150124 36150720 + 0.666667 NA Intergenic L1PA15|LINE|L1 205148 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 214-26 chr21 14882655 14883251 + 0.666667 NA intron (NR_146322, intron 1 of 3) AluSq2|SINE|Alu 35715 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 206.333-7 chr14 45088305 45088677 + 0.666667 NA intron (NM_017922, intron 1 of 13) intron (NM_017922, intron 1 of 13) 4375 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 195.5-27 chr2 183031040 183031435 + 0.666667 NA intron (NM_205842, intron 1 of 31) intron (NM_205842, intron 1 of 31) 7220 NM_013436 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 159-4 chr1 101047302 101047769 + 0.666667 NA intron (NR_109849, intron 1 of 4) L1ME2|LINE|L1 21689 NR_109849 102606465 Hs.593669 NR_109849 LOC102606465 - uncharacterized LOC102606465 ncRNA 125.667-97 chr5 62493679 62494106 + 0.666667 NA intron (NM_016338, intron 15 of 29) intron (NM_016338, intron 15 of 29) 75008 NM_001134779 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 179.833-12 chr15 58661519 58661819 + 0.666667 NA intron (NM_001320570, intron 5 of 14) L1MA2|LINE|L1 31938 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 200-23 chr16 66636287 66636748 + 0.666667 NA exon (NM_178818, exon 2 of 5) exon (NM_178818, exon 2 of 5) 31786 NR_037619 123920 Hs.298198 NM_144601 ENSG00000140931 CMTM3 BNAS2|CKLFSF3 CKLF like MARVEL transmembrane domain containing 3 protein-coding 141.333-34 chr14 68174238 68174577 + 0.666667 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 350815 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 168.5-14 chr12 26144683 26144952 + 0.666667 NA Intergenic Intergenic -19780 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 261.667-13 chr14 59245584 59246074 + 0.666667 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) -17612 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 190.833-16 chr15 32998781 32999204 + 0.666667 NA intron (NM_001277313, intron 7 of 20) intron (NM_001277313, intron 7 of 20) 69182 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 275.167-11 chr4 65989046 65989573 + 0.666667 NA Intergenic Intergenic -287515 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 199-24 chr4 91536967 91537401 + 0.666667 NA intron (NM_001145065, intron 10 of 10) MIR|SINE|MIR 740118 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 233.833-8 chr22 25576971 25577633 + 0.666667 NA intron (NM_001362778, intron 1 of 19) AluSz6|SINE|Alu 12627 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 142.667-40 chr2 10594243 10594533 + 0.666667 NA intron (NR_048552, intron 16 of 19) HAL1|LINE|L1 95587 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 203.333-17 chr2 26037665 26038059 + 0.666667 NA intron (NM_016131, intron 1 of 5) intron (NM_016131, intron 1 of 5) 3778 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 136.667-10 chr10 61206056 61206420 + 0.666667 NA Intergenic MIRb|SINE|MIR 189963 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 156.167-22 chr14 38999666 39000085 + 0.666667 NA Intergenic Intergenic -82993 NR_039982 283547 Hs.675941 NR_039982 ENSG00000259070 LINC00639 - long intergenic non-protein coding RNA 639 ncRNA 233.333-27 chr2 236516746 236517252 + 0.666667 NA Intergenic Intergenic -9464 NM_001270584 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 126.5-64 chr3 166289633 166290022 + 0.666667 NA Intergenic Intergenic -452404 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 137-30 chr13 65865632 65865916 + 0.666667 NA promoter-TSS (NR_132362) promoter-TSS (NR_132362) -273 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 158.333-72 chr8 104554206 104554476 + 0.666667 NA intron (NM_013437, intron 1 of 6) L1PB1|LINE|L1 34683 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 174.167-4 chr1 171909523 171909885 + 0.666667 NA intron (NM_001278252, intron 1 of 14) intron (NM_001278252, intron 1 of 14) 45512 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 144-37 chr2 141115122 141115492 + 0.666667 NA intron (NM_018557, intron 7 of 90) intron (NM_018557, intron 7 of 90) -528622 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 141.167-34 chr18 76299524 76299869 + 0.666667 NA Intergenic L1MC4|LINE|L1 90186 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 205.833-12 chr13 61804090 61804649 + 0.666667 NA Intergenic Intergenic 225179 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 190.833-42 chr7 133500040 133500421 + 0.666667 NA intron (NM_021807, intron 9 of 17) L1ME1|LINE|L1 209349 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 174.333-16 chr14 58101969 58102392 + 0.666667 NA intron (NM_001001872, intron 4 of 7) L2|LINE|L2 50033 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 132.5-68 chr4 107059820 107060268 + 0.666667 NA Intergenic Intergenic -23731 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 129.333-91 chr7 106623398 106623692 + 0.666667 NA Intergenic AluJr|SINE|Alu 37613 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 163.5-57 chr5 26092424 26093012 + 0.666667 NA Intergenic Intergenic 901765 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 189-50 chr8 72541563 72542011 + 0.666667 NA intron (NM_004770, intron 1 of 2) intron (NM_004770, intron 1 of 2) 4562 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 124.667-78 chr3 118668197 118668489 + 0.666667 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 26575 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 130-29 chr12 122287912 122288171 + 0.666667 NA intron (NM_198240, intron 19 of 23) AluSx3|SINE|Alu -21547 NM_001351019 65082 Hs.487883 NM_022916 ENSG00000139719 VPS33A MPSPS VPS33A core subunit of CORVET and HOPS complexes protein-coding 188.667-21 chr15 91949147 91949467 + 0.666667 NA intron (NR_135775, intron 2 of 10) MIR|SINE|MIR 95003 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 178.333-29 chr20 7943381 7943862 + 0.666667 NA Intergenic Intergenic -3163 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 152.667-12 chr11 4523945 4524390 + 0.666667 NA Intergenic L1MA2|LINE|L1 -21024 NM_001004137 119772 Hs.553567 NM_001004137 ENSG00000197790 OR52M1 OR11-11|OR52M1P|OR52M3P olfactory receptor family 52 subfamily M member 1 protein-coding 167.167-45 chr4 162240549 162240799 + 0.666667 NA Intergenic MER63B|DNA|hAT-Blackjack -76640 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 208.667-49 chrX 85618428 85618811 + 0.666667 NA Intergenic L1PA13|LINE|L1 -217161 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 204.333-20 chr14 61375110 61375671 + 0.666667 NA intron (NM_006255, intron 1 of 13) MSTA-int|LTR|ERVL-MaLR 53947 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 191.333-17 chr2 97862596 97863009 + 0.666667 NA intron (NM_015348, intron 4 of 40) L1MA3|LINE|L1 128396 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 162.667-72 chr6 118847713 118848185 + 0.666667 NA intron (NM_017696, intron 7 of 11) L1MC4|LINE|L1 -46203 NM_014034 25842 Hs.292316 NM_014034 ENSG00000111875 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 268.5-9 chr2 171670438 171671146 + 0.666667 NA Intergenic HAL1|LINE|L1 -16677 NM_001271790 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 174.667-49 chr5 55818939 55819444 + 0.666667 NA Intergenic Tigger4|DNA|TcMar-Tigger -32166 NM_001242638 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 173.333-6 chr1 106837292 106837633 + 0.666667 NA intron (NR_147165, intron 2 of 2) L1MC1|LINE|L1 19223 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 126.167-39 chr2 80980103 80980512 + 0.666667 NA Intergenic Intergenic 486639 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 137.333-7 chr1 204566161 204566392 + 0.666667 NA Intergenic Intergenic 49870 NM_002393 4194 Hs.497492 NM_002393 ENSG00000198625 MDM4 HDMX|MDMX|MRP1 MDM4 regulator of p53 protein-coding 144.5-63 chr4 29981977 29982336 + 0.666667 NA Intergenic Intergenic -738213 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 174.333-50 chr5 176934248 176934691 + 0.666667 NA intron (NR_146149, intron 10 of 15) MLT1J|LTR|ERVL-MaLR -35123 NM_002115 3101 Hs.411695 NM_002115 ENSG00000160883 HK3 HKIII|HXK3 hexokinase 3 protein-coding 122.333-63 chr21 25127449 25127762 + 0.666667 NA Intergenic Intergenic 287055 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 113.333-30 chr12 107266264 107266600 + 0.666667 NA Intergenic L1ME3A|LINE|L1 -52002 NM_001018072 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 114.5-52 chr2 143812562 143812759 + 0.666667 NA Intergenic Intergenic -124407 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 160.667-41 chr2 81900425 81900934 + 0.666667 NA Intergenic L1MC3|LINE|L1 -433733 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 136.667-73 chr4 143242366 143242738 + 0.666667 NA Intergenic L1ME4b|LINE|L1 57635 NM_001290325 84640 Hs.480848 NM_032557 ENSG00000170185 USP38 HP43.8KD ubiquitin specific peptidase 38 protein-coding 121.333-76 chr4 125037352 125037650 + 0.666667 NA Intergenic Intergenic -278911 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 132.5-43 chr2 13155876 13156187 + 0.666667 NA Intergenic Intergenic -149018 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 126.667-9 chr10 12636929 12637199 + 0.666667 NA intron (NM_001351032, intron 4 of 11) AluSx|SINE|Alu 16133 NR_039701 100616320 NR_039701 ENSG00000283699 MIR4481 - microRNA 4481 ncRNA 130.167-66 chr6 61799796 61800125 + 0.666667 NA intron (NR_146874, intron 6 of 13) (TA)n|Simple_repeat|Simple_repeat 225830 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 121.667-86 chr7 3004586 3004768 + 0.666667 NA intron (NM_001324281, intron 1 of 25) (AT)n|Simple_repeat|Simple_repeat 39190 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 168.667-50 chr22 28562317 28562797 + 0.666667 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 102688 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 172-28 chr16 64711619 64712086 + 0.666667 NA Intergenic L2b|LINE|L2 410211 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 114.667-86 chr3 119621604 119621869 + 0.666667 NA intron (NM_015900, intron 8 of 10) MIRc|SINE|MIR 21465 NM_001293225 51365 Hs.437451 NM_015900 ENSG00000144837 PLA1A PS-PLA1|PSPLA1 phospholipase A1 member A protein-coding 114.667-119 chr7 82328207 82328489 + 0.666667 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 115429 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 139.667-2 chr1 34248131 34248454 + 0.666667 NA Intergenic L1MEd|LINE|L1 71385 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 234.333-10 chr13 90836919 90837342 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR 89467 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 142.333-6 chr1 110536580 110536817 + 0.666667 NA Intergenic L3|LINE|CR1 -17523 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 200-21 chr14 59563567 59564032 + 0.666667 NA exon (NM_001164399, exon 6 of 20) exon (NM_001164399, exon 6 of 20) 13013 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 131.167-48 chr3 9880377 9880611 + 0.666667 NA promoter-TSS (NM_001321142) promoter-TSS (NM_001321142) -240 NM_001199551 63924 Hs.567562 NM_022094 ENSG00000187288 CIDEC CIDE-3|CIDE3|FPLD5|FSP27 cell death inducing DFFA like effector c protein-coding 133.333-96 chr5 18060314 18060838 + 0.666667 NA Intergenic AluSp|SINE|Alu 253302 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 116.333-78 chr5 27193844 27194059 + 0.666667 NA Intergenic L1M4|LINE|L1 -155365 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 138.333-94 chr6 124200421 124200766 + 0.666667 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -82412 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 128.167-31 chr15 58840365 58840575 + 0.666667 NA intron (NM_001040450, intron 6 of 8) intron (NM_001040450, intron 6 of 8) 69168 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 188-28 chr2 14776736 14777335 + 0.666667 NA Intergenic Intergenic 144318 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 188.667-7 chr10 112152470 112153117 + 0.666667 NA 3' UTR (NM_020918, exon 22 of 22) 3' UTR (NM_020918, exon 22 of 22) 30972 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 225.333-25 chr5 171897715 171898406 + 0.666667 NA intron (NM_012300, intron 5 of 12) intron (NM_012300, intron 5 of 12) 108813 NM_033644 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 173.667-60 chr7 16587014 16587294 + 0.666667 NA Intergenic MER61C|LTR|ERV1 58600 NM_020319 57037 Hs.157378 NM_020319 ENSG00000106524 ANKMY2 ZMYND20 ankyrin repeat and MYND domain containing 2 protein-coding 187.833-4 chr10 6739718 6740072 + 0.666667 NA TTS (NR_138480) TTS (NR_138480) 2513 NR_138480 108570035 Hs.568834 NR_138480 LINP1 - lncRNA in non-homologous end joining pathway 1 ncRNA 118.667-117 chr8 137119241 137119446 + 0.666667 NA Intergenic MIR|SINE|MIR 294245 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 135.333-47 chr2 227088604 227088818 + 0.666667 NA exon (NM_000092, exon 22 of 48) exon (NM_000092, exon 22 of 48) 75848 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 173-39 chr4 69648233 69648508 + 0.666667 NA promoter-TSS (NM_001301239) promoter-TSS (NM_001301239) -672 NM_001301239 10941 Hs.225950 NM_006798 ENSG00000173610 UGT2A1 UDPGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus protein-coding 127.833-8 chr10 48797397 48797689 + 0.666667 NA intron (NM_020945, intron 24 of 61) L1ME4a|LINE|L1 112080 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 138-25 chr12 72089622 72089845 + 0.666667 NA Intergenic L2a|LINE|L2 150888 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 212.667-24 chr2 123278275 123278700 + 0.666667 NA Intergenic Intergenic -205006 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 128.333-58 chr2 52977278 52977567 + 0.666667 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -274807 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 179.333-22 chr17 60806444 60806737 + 0.666667 NA intron (NM_001330413, intron 6 of 25) AluJo|SINE|Alu 128739 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 134.667-71 chr4 66033572 66033857 + 0.666667 NA Intergenic Intergenic -243110 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 121.167-19 chr12 32731981 32732402 + 0.666667 NA intron (NM_001330380, intron 13 of 18) intron (NM_001330380, intron 13 of 18) 23706 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 155.833-48 chr4 36724258 36724675 + 0.666667 NA Intergenic Intergenic -82566 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 192.667-38 chr4 45151825 45152378 + 0.666667 NA Intergenic Intergenic -425467 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 226.5-9 chr10 81668575 81669194 + 0.666667 NA Intergenic MER5A1|DNA|hAT-Charlie -206310 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 160-37 chr17 31619725 31620323 + 0.666667 NA Intergenic L1M4|LINE|L1 44613 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 222.5-12 chr2 147225218 147225624 + 0.666667 NA Intergenic MamRTE1|LINE|RTE-BovB -619096 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 127.5-8 chr1 230120924 230121434 + 0.666667 NA intron (NM_004481, intron 1 of 15) intron (NM_004481, intron 1 of 15) 53941 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 129.5-84 chr8 31493655 31494128 + 0.666667 NA Intergenic L1M5|LINE|L1 -145861 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 166.333-12 chr11 3628986 3629310 + 0.666667 NA intron (NR_002720, intron 2 of 6) L1MC4|LINE|L1 2688 NR_002720 7221 Hs.131910 NR_002720 ENSG00000182048 TRPC2 - transient receptor potential cation channel subfamily C member 2 (pseudogene) pseudo 177.5-7 chr1 113147184 113147704 + 0.666667 NA Intergenic Intergenic 58809 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 137.167 chr1 93853922 93854285 + 0.666667 NA Intergenic L1ME4b|LINE|L1 -6884 NM_001261408 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 116.5-90 chr8 54535453 54535786 + 0.666667 NA Intergenic Tigger17a|DNA|TcMar-Tigger 77684 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 144.667-47 chr17 62017048 62017351 + 0.666667 NA intron (NM_005121, intron 8 of 29) L1MEd|LINE|L1 48079 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 159-52 chr3 122135906 122136145 + 0.666667 NA Intergenic MSTD|LTR|ERVL-MaLR -47643 NM_000388 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 114.833-17 chr13 91321375 91321634 + 0.666667 NA Intergenic Intergenic -26316 NR_027350 407975 Hs.24115 NR_027349 ENSG00000215417 MIR17HG C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92 miR-17-92a-1 cluster host gene ncRNA 169.5-56 chr5 30722930 30723304 + 0.666667 NA Intergenic Intergenic -470569 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 154.667-7 chr1 245779720 245780218 + 0.666667 NA intron (NM_022743, intron 10 of 11) L1MB7|LINE|L1 -545452 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 172.333-65 chr5 174963472 174963913 + 0.666667 NA intron (NR_046113, intron 2 of 2) intron (NR_046113, intron 2 of 2) 32039 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 125-29 chr14 61047011 61047297 + 0.666667 NA intron (NR_033344, intron 12 of 16) intron (NR_033344, intron 12 of 16) -65464 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 137 chr1 8214318 8214598 + 0.666667 NA intron (NR_125998, intron 2 of 3) intron (NR_125998, intron 2 of 3) 5786 NR_125998 102724539 Hs.516816 NR_125998 ENSG00000227634 LINC01714 - long intergenic non-protein coding RNA 1714 ncRNA 173-42 chr5 84169580 84169890 + 0.666667 NA intron (NM_001278642, intron 3 of 9) L1MD2|LINE|L1 215132 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 156.333-47 chr2 133600925 133601198 + 0.666667 NA Intergenic Intergenic -32598 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 149-62 chr4 85745843 85746122 + 0.666667 NA intron (NM_001025616, intron 3 of 9) intron (NM_001025616, intron 3 of 9) 23514 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 136-66 chr5 39298627 39298994 + 0.666667 NA intron (NM_001737, intron 9 of 10) L1MEc|LINE|L1 -28161 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 127-30 chr14 47450135 47450360 + 0.666667 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -107001 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 164.667-58 chr5 109782825 109783270 + 0.666667 NA intron (NM_002372, intron 9 of 21) intron (NM_002372, intron 9 of 21) 93681 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 174.333-35 chr3 28398985 28399295 + 0.666667 NA intron (NM_001040432, intron 2 of 9) L1PB1|LINE|L1 49991 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 115.333-78 chr4 109676804 109677040 + 0.666667 NA intron (NM_017918, intron 4 of 7) MSTD-int|LTR|ERVL-MaLR 26523 NR_133012 839 Hs.654616 NM_001226 ENSG00000138794 CASP6 MCH2 caspase 6 protein-coding 128.333-6 chr1 164765785 164766185 + 0.666667 NA intron (NM_001204963, intron 2 of 8) L2c|LINE|L2 8656 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 122.167-62 chr6 149752986 149753460 + 0.666667 NA intron (NM_001252051, intron 1 of 6) intron (NM_001252051, intron 1 of 6) 3482 NM_001360456 5110 Hs.279257 NM_005389 ENSG00000120265 PCMT1 PIMT protein-L-isoaspartate (D-aspartate) O-methyltransferase protein-coding 150.333-31 chr12 47618525 47618820 + 0.666667 NA Intergenic Intergenic 87358 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 161.333-17 chr12 98255672 98256053 + 0.666667 NA Intergenic MLT1H|LTR|ERVL-MaLR 201283 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 121.667-48 chr18 69978856 69979177 + 0.666667 NA Intergenic L1MC5|LINE|L1 -22217 NM_001303619 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 141.333-48 chr2 48282604 48282893 + 0.666667 NA Intergenic MIRb|SINE|MIR -31934 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 124.667-29 chr13 109343916 109344242 + 0.666667 NA Intergenic MLT2A1|LTR|ERVL -56617 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 182-30 chr2 178581713 178582177 + 0.666667 NA exon (NM_133432, exon 144 of 192) exon (NM_133432, exon 144 of 192) 58754 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 143-57 chr4 162096916 162097415 + 0.666667 NA intron (NM_020116, intron 2 of 15) intron (NM_020116, intron 2 of 15) 66835 NM_020116 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 148.333-21 chr11 112640786 112641046 + 0.666667 NA Intergenic MSTB|LTR|ERVL-MaLR -85114 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 118-111 chr7 3060392 3060609 + 0.666667 NA Intergenic L1MB7|LINE|L1 -16633 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 230.167-13 chr2 187279288 187279814 + 0.666667 NA Intergenic L1M3|LINE|L1 168701 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 117.667-24 chr11 32792207 32792494 + 0.666667 NA intron (NM_001008391, intron 1 of 17) MER112|DNA|hAT-Charlie 2308 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 215.333-9 chr12 3870309 3870848 + 0.666667 NA intron (NM_001286522, intron 1 of 7) intron (NM_001286522, intron 1 of 7) 2821 NM_001286522 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 205-32 chr4 168065211 168065774 + 0.666667 NA Intergenic Intergenic -27045 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 170.5-68 chr8 100776435 100776980 + 0.666667 NA Intergenic Intergenic -54619 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 151-7 chr10 35059167 35059598 + 0.666667 NA intron (NM_001324376, intron 4 of 21) Tigger1|DNA|TcMar-Tigger 14901 NM_001324376 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 214.5-16 chr18 41679103 41679445 + 0.666667 NA Intergenic Intergenic -158597 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 146.333-4 chr1 165759065 165759387 + 0.666667 NA intron (NM_001256164, intron 3 of 6) intron (NM_001256164, intron 3 of 6) 9642 NM_001366129 54499 Hs.31498 NM_019026 ENSG00000143183 TMCO1 HP10122|PCIA3|PNAS-136|TMCC4 transmembrane and coiled-coil domains 1 protein-coding 340.833-4 chr3 70392587 70393336 + 0.666667 NA Intergenic Intergenic -80323 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 139-68 chr7 13961882 13962241 + 0.666667 NA intron (NM_001163148, intron 5 of 12) intron (NM_001163148, intron 5 of 12) 24453 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 113.167-36 chr2 36893138 36893307 + 0.666667 NA intron (NM_003162, intron 7 of 17) L1M5|LINE|L1 73314 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 128.667-58 chr19 12303111 12303395 + 0.666667 NA Intergenic L1M4c|LINE|L1 -8354 NM_001353553 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 145.667-105 chr9 85962836 85963192 + 0.666667 NA intron (NM_024635, intron 6 of 22) intron (NM_024635, intron 6 of 22) 21485 NM_001321882 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 146-65 chr7 113567031 113567250 + 0.666667 NA Intergenic Intergenic 351869 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 195.666-3 chr12 44621106 44621679 + 0.666667 NA intron (NM_006159, intron 14 of 20) MIR|SINE|MIR 254269 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 113.667-42 chr15 25126610 25126839 + 0.666667 NA intron (NR_146177, intron 61 of 147) L1MC4a|LINE|L1 -8918 NR_022009 145624 Hs.612027 NR_022009 ENSG00000279050 PWAR1 D15S227E|PAR-1|PAR1 Prader Willi/Angelman region RNA 1 ncRNA 121.167-84 chr7 131293192 131293407 + 0.666667 NA intron (NM_001145354, intron 2 of 18) MLT1H|LTR|ERVL-MaLR 34480 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 145.333-97 chr8 130184508 130184921 + 0.666667 NA intron (NM_001362925, intron 7 of 29) intron (NM_001362925, intron 7 of 29) -99946 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 227.666-7 chr7 137085637 137086279 + 0.666667 NA intron (NR_046103, intron 1 of 3) intron (NR_046103, intron 1 of 3) 78383 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 128.333-121 chr9 26211827 26212104 + 0.666667 NA Intergenic Intergenic 145290 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 172.167-14 chr13 57392105 57392389 + 0.666667 NA Intergenic Intergenic 225050 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 174-15 chr12 72969107 72969534 + 0.666667 NA Intergenic Intergenic -189870 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 139-61 chr6 77137992 77138406 + 0.666667 NA Intergenic L1MEj|LINE|L1 325823 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 195-9 chr14 31513676 31514111 + 0.666667 NA Intergenic AluSq2|SINE|Alu -25854 NM_001197184 2856 Hs.727479 NM_001197184 ENSG00000214943 GPR33 - G protein-coupled receptor 33 (gene/pseudogene) protein-coding 123.333-83 chr4 137325766 137326007 + 0.666667 NA Intergenic MIR|SINE|MIR -113087 NR_149105 105377441 Hs.668386 NR_149105 LINC02511 - long intergenic non-protein coding RNA 2511 ncRNA 135.5-46 chr2 167658670 167658895 + 0.666667 NA Intergenic Intergenic -159890 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 173.833-45 chr5 67522120 67522380 + 0.666667 NA Intergenic L3b|LINE|CR1 124539 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 145-27 chr14 57436961 57437482 + 0.666667 NA Intergenic L1MA3|LINE|L1 46635 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 170.333-63 chr6 74882401 74882719 + 0.666667 NA Intergenic MamGypLTR1b|LTR|Gypsy 246222 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 152-19 chr12 12703507 12703887 + 0.666667 NA Intergenic Intergenic -7514 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 159-30 chr17 69299662 69300188 + 0.666667 NA intron (NM_018672, intron 8 of 37) intron (NM_018672, intron 8 of 37) 15708 NM_018672 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 126.667-110 chr9 4625950 4626320 + 0.666667 NA intron (NR_148446, intron 4 of 8) LTR50|LTR|ERVL 36088 NM_001353489 55064 Hs.179615 NM_017985 ENSG00000106686 SPATA6L C9orf68|bA6J24.2 spermatogenesis associated 6 like protein-coding 249.667-7 chr10 110099299 110099703 + 0.666667 NA intron (NM_001121, intron 1 of 13) MER112|DNA|hAT-Charlie -91120 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 135.667-117 chrX 100839736 100840017 + 0.666667 NA intron (NM_001306206, intron 14 of 14) intron (NM_001306206, intron 14 of 14) 19513 NM_001306206 1478 Hs.132370 NM_001325 ENSG00000101811 CSTF2 CstF-64 cleavage stimulation factor subunit 2 protein-coding 151.167-37 chr4 117554995 117555339 + 0.666667 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 126769 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 157.167-36 chr20 32144901 32145288 + 0.666667 NA exon (NM_014742, exon 7 of 18) exon (NM_014742, exon 7 of 18) 35366 NM_001363731 9777 Hs.654665 NM_014742 ENSG00000101337 TM9SF4 dJ836N17.2 transmembrane 9 superfamily member 4 protein-coding 117.167-78 chr5 56168109 56168566 + 0.666667 NA intron (NM_024669, intron 5 of 11) MER44B|DNA|TcMar-Tigger 64993 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 219.5-47 chrX 69791853 69792480 + 0.666667 NA intron (NM_001005613, intron 2 of 2) L1PB2|LINE|L1 176053 NM_001005610 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 123-69 chr4 99385517 99385804 + 0.666667 NA Intergenic Intergenic -32914 NM_000669 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 183.333-63 chr8 127623476 127624063 + 0.666667 NA Intergenic AluSx|SINE|Alu 110198 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 148.667-36 chr2 81122012 81122410 + 0.666667 NA Intergenic L1MB7|LINE|L1 344735 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 208.333-47 chrX 137090506 137091099 + 0.666667 NA Intergenic Intergenic -59128 NM_054021 83550 Hs.350569 NM_054021 ENSG00000165370 GPR101 GPCR6|PAGH2|PITA2 G protein-coupled receptor 101 protein-coding 291.833-2 chr11 36665222 36666023 + 0.666667 NA Intergenic LTR9C|LTR|ERV1 -67343 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 120.333-33 chr12 13750199 13750436 + 0.666667 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 230039 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 262.667-31 chr7 26761601 26762209 + 0.666667 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 95818 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 145.833-34 chr18 29388542 29388798 + 0.666667 NA Intergenic Intergenic -910240 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 219-24 chr6 67658304 67658946 + 0.666667 NA Intergenic Intergenic -396726 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 142.333-46 chr2 13724941 13725388 + 0.666667 NA Intergenic Intergenic 675794 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 129.833-26 chr16 77585628 77585916 + 0.666667 NA Intergenic Intergenic -136720 NM_001243661 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 186.5-33 chr18 10304737 10305243 + 0.666667 NA Intergenic Intergenic 109380 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 131.333-34 chr15 76647891 76648206 + 0.666667 NA intron (NR_148227, intron 21 of 32) L1PA10|LINE|L1 61401 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 150.333-55 chr2 32962639 32962922 + 0.666667 NA intron (NM_206943, intron 2 of 33) MER5A|DNA|hAT-Charlie 15827 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 148.833-23 chr15 85683914 85684177 + 0.666667 NA intron (NM_007200, intron 15 of 36) intron (NM_007200, intron 15 of 36) 64095 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 204.5-12 chr13 22973979 22974699 + 0.666667 NA Intergenic Intergenic -57970 NR_138043 100996930 Hs.380803 NR_138043 LINC00621 - long intergenic non-protein coding RNA 621 ncRNA 113.833-54 chr3 62239535 62239842 + 0.666667 NA intron (NM_002841, intron 14 of 29) intron (NM_002841, intron 14 of 29) 79259 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 180-21 chr2 28010634 28011056 + 0.666667 NA intron (NM_199193, intron 5 of 13) MLT1K|LTR|ERVL-MaLR 14478 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 152-30 chr2 59720980 59721309 + 0.666667 NA Intergenic Intergenic 503436 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 165.333-49 chr5 112626686 112626987 + 0.666667 NA Intergenic Intergenic -1600 NR_104672 102467214 Hs.124613 NR_104672 LINC02200 - long intergenic non-protein coding RNA 2200 ncRNA 130-93 chr7 14863783 14864133 + 0.666667 NA intron (NM_001350717, intron 1 of 24) AluSp|SINE|Alu -22508 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 140.167-64 chr6 135231309 135231715 + 0.666667 NA Intergenic Intergenic -7648 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 162.667-58 chr4 121928819 121929083 + 0.666667 NA intron (NM_001130698, intron 2 of 11) MIR|SINE|MIR 4162 NM_003305 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 180.167-14 chr14 40421582 40421951 + 0.666667 NA Intergenic Intergenic -532945 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 282.667 chr1 232591728 232592732 + 0.666667 NA Intergenic Intergenic -76622 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 203-22 chr2 110827617 110828086 + 0.666667 NA intron (NM_001371254, intron 9 of 18) L1ME4c|LINE|L1 95278 NM_001371254 201.667-38 chr6 130695074 130695492 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR -132122 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 140.333-18 chr13 29655321 29655677 + 0.666667 NA TTS (NR_135320) TTS (NR_135320) 7806 NR_135320 102723345 Hs.121353 NR_135320 LOC102723345 - uncharacterized LOC102723345 ncRNA 127.333-46 chr2 34154125 34154356 + 0.666667 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 87014 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 113.167-44 chr20 49390228 49390680 + 0.666667 NA intron (NM_004975, intron 1 of 1) intron (NM_004975, intron 1 of 1) 92214 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 149.333-91 chr8 14514379 14514661 + 0.666667 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 338990 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 174.167-22 chr2 108633324 108633656 + 0.666667 NA intron (NM_001193484, intron 1 of 9) intron (NM_001193484, intron 1 of 9) 12239 NM_001193484 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 144.833-60 chr5 66053969 66054323 + 0.666667 NA exon (NM_001253698, exon 21 of 24) exon (NM_001253698, exon 21 of 24) -90154 NM_001323534 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 155.667-52 chr4 17133762 17134116 + 0.666667 NA Intergenic Intergenic 52118 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 174.667-66 chr8 92143548 92143873 + 0.666667 NA Intergenic L1MC4|LINE|L1 -40325 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 191-20 chr18 13513214 13513773 + 0.666667 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) 53546 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 127.333-22 chr11 112102242 112102531 + 0.666667 NA Intergenic AluSx4|SINE|Alu 15513 NM_001276506 6392 Hs.356270 NM_003002 ENSG00000204370 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex subunit D protein-coding 127-11 chr11 5099307 5099670 + 0.666667 NA Intergenic L1M5|LINE|L1 30116 NM_001348221 79296 NM_001348221 ENSG00000273085 OR52E1 OR52E1P olfactory receptor family 52 subfamily E member 1 (gene/pseudogene) protein-coding 164.333-16 chr12 41000890 41001221 + 0.666667 NA intron (NM_001843, intron 17 of 23) L1PA13|LINE|L1 92698 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 151.833-5 chr10 16213716 16214123 + 0.666667 NA Intergenic L1ME3C|LINE|L1 -223024 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 152-43 chr7 7259586 7259978 + 0.666667 NA intron (NR_108073, intron 2 of 3) intron (NR_108073, intron 2 of 3) 4628 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 205.167-40 chr8 113406850 113407482 + 0.666667 NA intron (NM_001363185, intron 1 of 66) L3|LINE|CR1 29773 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 166.667-37 chr4 57667935 57668289 + 0.666667 NA Intergenic Intergenic 242240 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 127.167-53 chr3 38214164 38214649 + 0.666667 NA intron (NM_005109, intron 4 of 17) intron (NM_005109, intron 4 of 17) 48869 NM_005109 9943 Hs.475970 NM_005109 ENSG00000172939 OXSR1 OSR1 oxidative stress responsive kinase 1 protein-coding 126.5-12 chr11 96901001 96901283 + 0.666667 NA Intergenic Intergenic 392717 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 175-22 chr15 27258972 27259419 + 0.666667 NA intron (NM_001270873, intron 3 of 5) L1MA5|LINE|L1 -97876 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 232.667-21 chr3 181809223 181809667 + 0.666667 NA Intergenic L2b|LINE|L2 97520 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 142.333-65 chr21 44353251 44353762 + 0.666667 NA promoter-TSS (NM_001320351) promoter-TSS (NM_001320351) -95 NM_001320351 7226 Hs.369759 NM_003307 ENSG00000142185 TRPM2 EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel subfamily M member 2 protein-coding 142.333-42 chr17 71548715 71549074 + 0.666667 NA Intergenic Intergenic -346715 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 218-48 chr9 21705693 21706266 + 0.666667 NA Intergenic Intergenic -96657 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 153.667-51 chr3 112327293 112327608 + 0.666667 NA intron (NR_147411, intron 2 of 4) intron (NR_147411, intron 2 of 4) -5123 NM_001365855 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 234.166-2 chr14 74788466 74789129 + 0.666667 NA intron (NM_019589, intron 4 of 20) AluJr|SINE|Alu 25481 NM_019589 56252 Hs.531111 NM_019589 ENSG00000119596 YLPM1 C14orf170|PPP1R169|ZAP113|ZAP3 YLP motif containing 1 protein-coding 172.5-20 chr14 53446029 53446582 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR 292951 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 259.5-14 chr4 32831380 32832054 + 0.666667 NA Intergenic AluSx1|SINE|Alu 480679 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 137-15 chr10 104960404 104960741 + 0.666667 NA intron (NM_014978, intron 3 of 26) MSTC|LTR|ERVL-MaLR -294356 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 212.167-19 chr5 45728384 45728975 + 0.666667 NA Intergenic Tigger18a|DNA|TcMar-Tigger -32299 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 117.667-107 chr5 126955412 126955787 + 0.666667 NA intron (NM_178450, intron 1 of 4) L1ME3Cz|LINE|L1 74959 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 134.333-40 chr15 49599536 49599765 + 0.666667 NA intron (NM_001330293, intron 3 of 10) L1M3e|LINE|L1 21168 NM_152647 196951 Hs.712959 NM_152647 ENSG00000166262 FAM227B C15orf33 family with sequence similarity 227 member B protein-coding 130.667-58 chr3 183060805 183061152 + 0.666667 NA intron (NR_120639, intron 5 of 15) intron (NR_120639, intron 5 of 15) 38265 NR_120640 56922 Hs.47649 NM_020166 ENSG00000078070 MCCC1 MCC-B|MCCA methylcrotonoyl-CoA carboxylase 1 protein-coding 129.333-47 chr2 106792107 106792360 + 0.666667 NA Intergenic MER1B|DNA|hAT-Charlie 93795 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 119.833-71 chr5 110701127 110701402 + 0.666667 NA intron (NM_001039763, intron 1 of 13) ERV24B_Prim-int|LTR|ERV1 25407 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 180.5-6 chr1 164027328 164027784 + 0.666667 NA Intergenic ERVL-B4-int|LTR|ERVL -531804 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 121.167-31 chr16 66322899 66323186 + 0.666667 NA Intergenic Intergenic -43649 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 140.333-7 chr10 13627626 13627968 + 0.666667 NA intron (NM_003675, intron 9 of 9) intron (NM_003675, intron 9 of 9) 40832 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 122.5-22 chr12 61889449 61889667 + 0.666667 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 303281 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 193.333-56 chrX 109917241 109917704 + 0.666667 NA Intergenic Intergenic 47071 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 312.833-2 chr10 88842131 88842892 + 0.666667 NA intron (NM_144590, intron 1 of 5) L2a|LINE|L2 9333 NM_144590 118932 Hs.217484 NM_144590 ENSG00000152766 ANKRD22 - ankyrin repeat domain 22 protein-coding 239.667 chr1 64130270 64131041 + 0.666667 NA intron (NM_005012, intron 4 of 8) intron (NM_005012, intron 4 of 8) -16864 NR_110665 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 114.667-92 chr4 65116213 65116448 + 0.666667 NA Intergenic L1MA3|LINE|L1 -111830 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 173.667-28 chr2 60917080 60917401 + 0.666667 NA intron (NM_002908, intron 5 of 10) L1ME4a|LINE|L1 35666 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 195.167-44 chr9 80566934 80567441 + 0.666667 NA Intergenic L1MB7|LINE|L1 592164 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 143.333-32 chr2 44160556 44160896 + 0.666667 NA Intergenic Intergenic -8077 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 132.333-116 chr9 112985442 112985802 + 0.666667 NA Intergenic Intergenic 26570 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 117.333-64 chr22 26595005 26595255 + 0.666667 NA Intergenic Intergenic -4998 NM_001362923 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 190.833-41 chr7 107264720 107265054 + 0.666667 NA intron (NM_181733, intron 14 of 20) intron (NM_181733, intron 14 of 20) 95884 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 225.833-2 chr1 224440544 224441122 + 0.666667 NA intron (NM_001322303, intron 1 of 5) AluY|SINE|Alu 5984 NR_136294 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 122.667-65 chr3 68893180 68893512 + 0.666667 NA intron (NM_001005527, intron 1 of 5) L2a|LINE|L2 39201 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 118.167-25 chr16 74100710 74101054 + 0.666667 NA Intergenic Intergenic 114639 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 191-24 chr2 11956795 11957227 + 0.666667 NA Intergenic MIRb|SINE|MIR -50105 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 205.667-44 chr4 99407968 99408432 + 0.666667 NA Intergenic Intergenic 26934 NM_001166504 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 192.333-26 chr20 55304614 55304978 + 0.666667 NA Intergenic L1PA13|LINE|L1 -118247 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 114.833-32 chr2 49390771 49391104 + 0.666667 NA Intergenic L1PREC2|LINE|L1 -236410 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 117.667-2 chr1 78068056 78068306 + 0.666667 NA intron (NM_017655, intron 1 of 5) intron (NM_017655, intron 1 of 5) 22215 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 213.667-29 chr4 112939597 112940078 + 0.666667 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) 78850 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 158.5-83 chr8 79145180 79145620 + 0.666667 NA Intergenic L1MC1|LINE|L1 -186788 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 131-41 chr3 144145255 144145623 + 0.666667 NA Intergenic MER20|DNA|hAT-Charlie 172358 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 216.167-4 chr10 53629141 53629541 + 0.666667 NA Intergenic L2b|LINE|L2 -856889 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 188.667-19 chr14 60454363 60454904 + 0.666667 NA intron (NM_174978, intron 16 of 17) MamRTE1|LINE|RTE-BovB 31430 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 178.5-30 chr14 70326057 70326391 + 0.666667 NA 3' UTR (NM_001202547, exon 6 of 6) 3' UTR (NM_001202547, exon 6 of 6) 33459 NM_016468 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 115-41 chr2 168515392 168515624 + 0.666667 NA intron (NM_001256126, intron 1 of 10) intron (NM_001256126, intron 1 of 10) 59236 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 163-6 chr10 4640917 4641326 + 0.666667 NA Intergenic Intergenic -15035 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 197.667-29 chr2 102463545 102463895 + 0.666667 NA Intergenic Intergenic -9506 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 263.667-8 chr16 56121190 56121876 + 0.666667 NA intron (NR_027078, intron 2 of 4) L2c|LINE|L2 69561 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 184.167-10 chr10 83756728 83757067 + 0.666667 NA Intergenic L1M2b|LINE|L1 -79808 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 203.833-27 chr8 86754789 86755386 + 0.666667 NA Intergenic Intergenic -11412 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 163.833-49 chr6 129463658 129463926 + 0.666667 NA intron (NM_000426, intron 49 of 64) L2a|LINE|L2 246385 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 174.167-5 chr1 209618259 209618685 + 0.666667 NA exon (NM_000228, exon 19 of 23) exon (NM_000228, exon 19 of 23) 5038 NR_036213 100422894 NR_036213 ENSG00000283876 MIR4260 - microRNA 4260 ncRNA 177-73 chr9 75788582 75789015 + 0.666667 NA Intergenic L1M4b|LINE|L1 -101846 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 133.333-2 chr1 81000742 81001061 + 0.666667 NA Intergenic Intergenic -305291 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 160-54 chr3 103185067 103185373 + 0.666667 NA Intergenic L1M4c|LINE|L1 338896 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 182.667-56 chr7 87071770 87072186 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -12324 NM_001142749 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 141.167-51 chr3 25482254 25482511 + 0.666667 NA intron (NR_110892, intron 2 of 6) intron (NR_110892, intron 2 of 6) 24072 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 314.5-8 chr3 1725330 1726148 + 0.666667 NA Intergenic Intergenic -373064 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 245.167-18 chr9 37523797 37524208 + 0.666667 NA intron (NM_012166, intron 6 of 10) intron (NM_012166, intron 6 of 10) 38054 NM_022490 64425 Hs.591087 NM_022490 ENSG00000137054 POLR1E PAF53|PRAF1 RNA polymerase I subunit E protein-coding 136.667-63 chr3 101911890 101912225 + 0.666667 NA Intergenic Intergenic -28802 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 198-57 chr7 38038284 38038670 + 0.666667 NA Intergenic L1M8|LINE|L1 117158 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 217.5-32 chr3 62437505 62437948 + 0.666667 NA intron (NM_003716, intron 28 of 29) intron (NM_003716, intron 28 of 29) -64176 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 134.333-87 chr4 141157181 141157619 + 0.666667 NA Intergenic Intergenic -23931 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 126.333-60 chr2 132849290 132849628 + 0.666667 NA intron (NM_207481, intron 11 of 17) intron (NM_207481, intron 11 of 17) -66098 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 167.833-2 chr1 86664618 86665067 + 0.666667 NA intron (NR_135837, intron 4 of 4) L1MA3|LINE|L1 30566 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 170-31 chr18 13105713 13106058 + 0.666667 NA intron (NM_032142, intron 40 of 44) L1P4|LINE|L1 -112875 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 205-15 chr18 70823078 70823524 + 0.666667 NA Intergenic Intergenic -172347 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 139.167-75 chrX 47184302 47184510 + 0.666667 NA intron (NM_152856, intron 16 of 22) AluSq2|SINE|Alu -6441 NM_153280 7317 Hs.533273 NM_003334 ENSG00000130985 UBA1 A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X ubiquitin like modifier activating enzyme 1 protein-coding 140.333-62 chr4 181886219 181886592 + 0.666667 NA Intergenic Intergenic -56432 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 123.333-73 chr3 63194314 63194577 + 0.666667 NA Intergenic Intergenic -83863 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 117-104 chr6 133112003 133112270 + 0.666667 NA Intergenic Intergenic 24056 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 156-17 chr11 130614388 130614698 + 0.666667 NA Intergenic Intergenic -52192 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 207.167-12 chr14 56990635 56991106 + 0.666667 NA Intergenic MIR3|SINE|MIR 177712 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 123-73 chr5 30387796 30388064 + 0.666667 NA Intergenic Intergenic 507370 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 146.333-84 chr5 121161257 121161665 + 0.666667 NA Intergenic Intergenic -161089 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 177.167-29 chr3 122115813 122116179 + 0.666667 NA intron (NM_001206925, intron 4 of 5) L1ME1|LINE|L1 38147 NM_006889 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 196.833-9 chr11 79173841 79174209 + 0.666667 NA intron (NM_001098816, intron 3 of 33) intron (NM_001098816, intron 3 of 33) 228084 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 208.167-6 chr15 70706938 70707291 + 0.666667 NA intron (NM_018003, intron 1 of 18) L1MB2|LINE|L1 -4832 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 217-40 chrX 51923902 51924368 + 0.666667 NA Intergenic L1MEf|LINE|L1 30512 NM_001005333 9500 Hs.5258 NM_006986 ENSG00000179222 MAGED1 DLXIN-1|NRAGE MAGE family member D1 protein-coding 197-3 chr1 187022011 187022397 + 0.666667 NA Intergenic L1PA15|LINE|L1 -70638 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 171.333-36 chr2 159677382 159677779 + 0.666667 NA Intergenic Intergenic 34862 NR_110586 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 146-33 chr2 25578373 25578713 + 0.666667 NA intron (NM_033147, intron 7 of 19) intron (NM_033147, intron 7 of 19) 71679 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 164.5-10 chr11 20807989 20808360 + 0.666667 NA intron (NM_001288714, intron 3 of 18) L1M1|LINE|L1 138588 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 149.333-17 chr11 87139312 87139865 + 0.666667 NA intron (NM_001168724, intron 4 of 13) L1ME1|LINE|L1 101654 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 123.833-25 chr16 68596026 68596302 + 0.666667 NA Intergenic AluJb|SINE|Alu -49146 NM_001317196 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 210.333-24 chr3 90353140 90353654 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 1245776 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 144.667-62 chr21 32980964 32981222 + 0.666667 NA Intergenic Intergenic 22205 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 219.167-21 chr5 165706670 165707244 + 0.666667 NA Intergenic Intergenic 1219413 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 147-32 chr2 36615511 36616005 + 0.666667 NA Intergenic Arthur1|DNA|hAT-Tip100 -17590 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 172.667-28 chr15 98221417 98221722 + 0.666667 NA Intergenic Intergenic 109989 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 171.667-39 chr2 111219853 111220213 + 0.666667 NA intron (NR_015395, intron 5 of 6) intron (NR_015395, intron 5 of 6) 99119 NM_001204108 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 192.5-20 chr18 21547142 21547748 + 0.666667 NA intron (NM_052911, intron 8 of 11) MIRc|SINE|MIR 53259 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 167.667-48 chr2 161028709 161029093 + 0.666667 NA Intergenic L2c|LINE|L2 -108054 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 223.833-4 chr1 172265909 172266617 + 0.666667 NA intron (NR_146559, intron 16 of 20) intron (NR_146559, intron 16 of 20) -121428 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 233.5-13 chr2 134533173 134533669 + 0.666667 NA intron (NM_030923, intron 4 of 7) intron (NM_030923, intron 4 of 7) 185579 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 170-65 chr6 161403806 161404241 + 0.666667 NA intron (NM_004562, intron 9 of 11) intron (NM_004562, intron 9 of 11) -66954 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 178-27 chr20 50115216 50115658 + 0.666667 NA intron (NM_199203, intron 5 of 7) intron (NM_199203, intron 5 of 7) 520 NM_001257394 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 191.667-47 chr6 37124856 37125322 + 0.666667 NA Intergenic AluJr|SINE|Alu -45063 NM_002648 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 164.333-75 chr7 1584818 1585234 + 0.666667 NA non-coding (NR_021487, exon 5 of 6) non-coding (NR_021487, exon 5 of 6) 14953 NR_027328 114796 Hs.436146 NR_021487 ENSG00000230487 PSMG3-AS1 - PSMG3 antisense RNA 1 (head to head) ncRNA 125.833-6 chr1 205603437 205603662 + 0.666667 NA TTS (NM_181644) TTS (NM_181644) 29323 NM_021795 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ETS transcription factor ELK4 protein-coding 156.5-29 chr13 91014872 91015172 + 0.666667 NA Intergenic Intergenic 74595 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 146.833-63 chr8 92656435 92656829 + 0.666667 NA Intergenic L2b|LINE|L2 -1138 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 170.833-23 chr20 39704579 39704933 + 0.666667 NA Intergenic Intergenic -299705 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 128.5-55 chr3 165716885 165717229 + 0.666667 NA Intergenic MER57-int|LTR|ERV1 120366 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 128.167-73 chr5 171284053 171284449 + 0.666667 NA intron (NM_022897, intron 25 of 27) intron (NM_022897, intron 25 of 27) -24997 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 197.667-12 chr12 62683249 62683691 + 0.666667 NA intron (NM_020700, intron 8 of 9) intron (NM_020700, intron 8 of 9) 79784 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 196.667-50 chr7 33461917 33462453 + 0.666667 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 332621 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 172.167-46 chr8 50159270 50159598 + 0.666667 NA intron (NR_135798, intron 1 of 15) HAL1|LINE|L1 -4697 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 166.667-53 chr6 138504842 138505232 + 0.666667 NA intron (NM_020464, intron 1 of 6) intron (NM_020464, intron 1 of 6) -5543 NM_001144060 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 198-3 chr1 44943799 44944556 + 0.666667 NA intron (NM_001166588, intron 3 of 9) intron (NM_001166588, intron 3 of 9) 42418 NM_020365 8891 Hs.533549 NM_020365 ENSG00000070785 EIF2B3 EIF-2B|EIF2Bgamma eukaryotic translation initiation factor 2B subunit gamma protein-coding 118-83 chr4 81391342 81391632 + 0.666667 NA Intergenic Intergenic 80420 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 159.667-32 chr14 46060717 46061140 + 0.666667 NA Intergenic Intergenic -3231 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 166.167-24 chr2 49136659 49137088 + 0.666667 NA intron (NM_000145, intron 1 of 9) L1MB7|LINE|L1 17642 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 137-17 chr11 36973405 36973908 + 0.666667 NA Intergenic L1M5|LINE|L1 -375377 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 130.833-14 chr14 36792881 36793110 + 0.666667 NA intron (NM_001171170, intron 3 of 10) intron (NM_001171170, intron 3 of 10) 135427 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 157.667-10 chr10 76269178 76269605 + 0.666667 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 486630 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 148.333-87 chr6 54983355 54983755 + 0.666667 NA Intergenic MER48|LTR|ERV1 -122905 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 144.333-49 chr2 155274856 155275153 + 0.666667 NA Intergenic L1MA3|LINE|L1 576309 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 208-32 chr5 77571847 77572409 + 0.666667 NA Intergenic Intergenic 66569 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 236.667-24 chr3 109691700 109692366 + 0.666667 NA Intergenic L1PA16|LINE|L1 89205 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 351.334 chr10 22631762 22632724 + 0.666667 NA intron (NM_005028, intron 1 of 9) L1MC4a|LINE|L1 81865 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 134-37 chr14 36984590 36985096 + 0.666667 NA intron (NM_001171170, intron 1 of 10) L1PA2|LINE|L1 -32452 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 123.167-93 chr7 128323900 128324186 + 0.666667 NA intron (NM_018077, intron 12 of 18) intron (NM_018077, intron 12 of 18) 19865 NM_018077 55131 Hs.274263 NM_018077 ENSG00000106344 RBM28 ANES RNA binding motif protein 28 protein-coding 116-65 chr3 178148012 178148199 + 0.666667 NA Intergenic Intergenic -271096 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 161.167-44 chr5 37646891 37647190 + 0.666667 NA intron (NM_001345998, intron 10 of 17) L1MA3|LINE|L1 187782 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 135.333-7 chr10 29122558 29122868 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie -166357 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 137.167-66 chr8 8652420 8652675 + 0.666667 NA Intergenic AluJr|SINE|Alu -49390 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 128.667-113 chrX 67485258 67485615 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger -58585 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 192.833-14 chr13 90630565 90631039 + 0.666667 NA Intergenic Intergenic 137514 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 160.667-44 chr2 199968837 199969102 + 0.666667 NA Intergenic Intergenic -13478 NR_109905 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 120.667-75 chr22 42378585 42378802 + 0.666667 NA Intergenic Intergenic -9485 NR_120596 102723775 Hs.335413 NR_120595 ENSG00000229891 LINC01315 C22orf32-1|lnc-C22orf32-1 long intergenic non-protein coding RNA 1315 ncRNA 183-51 chr7 96538568 96539020 + 0.666667 NA intron (NR_163953, intron 2 of 5) L1MCa|LINE|L1 -35271 NR_163948 132.333-50 chr2 21246652 21246960 + 0.666667 NA Intergenic MSTA|LTR|ERVL-MaLR 122820 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 170.333-57 chr5 72536989 72537509 + 0.666667 NA Intergenic MIRb|SINE|MIR -19828 NR_105008 102503427 Hs.429280 NR_105008 LOC102503427 - uncharacterized LOC102503427 ncRNA 180-31 chr3 9911731 9912054 + 0.666667 NA intron (NM_153483, intron 13 of 16) intron (NM_153483, intron 13 of 16) -5182 NM_001203264 84818 Hs.129959 NM_032732 ENSG00000163702 IL17RC CANDF9|IL17-RL|IL17RL interleukin 17 receptor C protein-coding 133.667-92 chr7 105588247 105588558 + 0.666667 NA Intergenic Intergenic -6860 NM_001355529 100130771 Hs.719432 NM_001355526 ENSG00000185055 EFCAB10 - EF-hand calcium binding domain 10 protein-coding 171.667-89 chr9 103263251 103263659 + 0.666667 NA intron (NR_121578, intron 6 of 9) intron (NR_121578, intron 6 of 9) 61578 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 167-65 chr8 142758599 142759038 + 0.666667 NA Intergenic Intergenic -6286 NM_205545 137797 Hs.441280 NM_205545 ENSG00000197353 LYPD2 LYPDC2|UNQ430 LY6/PLAUR domain containing 2 protein-coding 131.333-62 chr20 59075334 59075628 + 0.666667 NA Intergenic Intergenic -32635 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 232.833-17 chr6 47790925 47791476 + 0.666667 NA intron (NR_033806, intron 1 of 6) L1M5|LINE|L1 4132 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 200.5-51 chrX 82439870 82440574 + 0.666667 NA Intergenic L1PA15|LINE|L1 -1068068 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 215-29 chr5 15180051 15180483 + 0.666667 NA Intergenic Intergenic 86293 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 156-9 chr10 35104151 35104669 + 0.666667 NA Intergenic AluJo|SINE|Alu -13796 NM_001198777 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 235.833-12 chr20 43008750 43009220 + 0.666667 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 40242 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 159-40 chr2 34157721 34157984 + 0.666667 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 90626 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 214.333-25 chr2 170791813 170792265 + 0.666667 NA intron (NM_001289947, intron 2 of 4) intron (NM_001289947, intron 2 of 4) 8248 NM_001289947 285141 Hs.443729 NM_001289947 ENSG00000204334 ERICH2 - glutamate rich 2 protein-coding 132.333-103 chr8 82184768 82185127 + 0.666667 NA Intergenic Intergenic -342661 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 239.667-34 chrX 47866530 47867045 + 0.666667 NA intron (NM_007137, intron 2 of 4) MER67C|LTR|ERV1 29885 NM_007137 347344 Hs.114246 NM_007137 ENSG00000197779 ZNF81 HFZ20|MRX45|dJ54B20.6 zinc finger protein 81 protein-coding 159.5-31 chr20 40495534 40496107 + 0.666667 NA Intergenic MER5A1|DNA|hAT-Charlie 193416 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 206.667-51 chr9 28525051 28525473 + 0.666667 NA intron (NM_152570, intron 2 of 6) L1MB8|LINE|L1 194043 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 240.667-2 chr1 40173006 40173638 + 0.666667 NA intron (NM_012421, intron 1 of 7) AluSp|SINE|Alu 11935 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 131-49 chr5 7793098 7793357 + 0.666667 NA intron (NM_020546, intron 20 of 24) AluSg|SINE|Alu 57906 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 143.667-41 chr14 78421306 78421654 + 0.666667 NA intron (NM_004796, intron 1 of 16) L1ME4a|LINE|L1 17761 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 118.667-44 chr18 6677709 6678119 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -51802 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 157.833-34 chr19 28037471 28037764 + 0.666667 NA Intergenic Intergenic -243677 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 134.667-7 chr10 25861721 25862057 + 0.666667 NA Intergenic HAL1|LINE|L1 71821 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 116.167-21 chr12 44871313 44871573 + 0.666667 NA intron (NM_006159, intron 3 of 20) intron (NM_006159, intron 3 of 20) 4218 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 172-42 chr20 51764037 51764413 + 0.666667 NA intron (NM_006045, intron 1 of 27) MIR|SINE|MIR 4165 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 132.667-75 chr4 145157858 145158078 + 0.666667 NA intron (NM_001366057, intron 7 of 20) intron (NM_001366057, intron 7 of 20) 20190 NM_017493 54726 Hs.270851 NM_017493 ENSG00000164164 OTUD4 DUBA6|HIN1|HSHIN1 OTU deubiquitinase 4 protein-coding 261.833 chr10 121253873 121254424 + 0.666667 NA Intergenic Intergenic 277166 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 213-3 chr1 220389173 220389617 + 0.666667 NA Intergenic L2c|LINE|L2 -116942 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 172-35 chr18 59864408 59864737 + 0.666667 NA Intergenic Intergenic -35424 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 148-5 chr1 114285287 114285695 + 0.666667 NA Intergenic Intergenic -131622 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 130.5-56 chr3 193670881 193671238 + 0.666667 NA intron (NM_130831, intron 26 of 27) L1MC4|LINE|L1 -43727 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 132.5-4 chr1 182444512 182444851 + 0.666667 NA Intergenic Intergenic -5465 NM_001366934 353299 Hs.121200 NM_032267 ENSG00000121446 RGSL1 RGSL|RGSL2 regulator of G protein signaling like 1 protein-coding 123.167-6 chr1 211471056 211471289 + 0.666667 NA Intergenic Intergenic 21745 NM_001164688 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3, GUCY2D regulator protein-coding 141.833-14 chr15 59110790 59111053 + 0.666667 NA intron (NM_004701, intron 3 of 8) L2b|LINE|L2 5775 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 167.667-88 chr8 98945633 98946018 + 0.666667 NA intron (NM_001142462, intron 1 of 3) intron (NM_001142462, intron 1 of 3) 1383 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 190.666-2 chr21 31477555 31478115 + 0.666667 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 81252 NM_001353690 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 178.834-5 chr8 144388915 144389519 + 0.666667 NA intron (NM_174922, intron 3 of 14) intron (NM_174922, intron 3 of 14) 5013 NR_030635 100126351 NR_030635 ENSG00000284310 MIR939 MIRN939|hsa-mir-939|mir-939 microRNA 939 ncRNA 179.667-13 chr14 64236801 64237266 + 0.666667 NA intron (NM_001271877, intron 4 of 5) AluSx3|SINE|Alu 21079 NM_182910 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 121.333-22 chr12 96993248 96993607 + 0.666667 NA Intergenic Intergenic 85961 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 188.667-4 chr1 189659246 189659732 + 0.666667 NA Intergenic Intergenic 816521 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 133.5-68 chr7 2109211 2109507 + 0.666667 NA intron (NM_001013837, intron 11 of 18) intron (NM_001013837, intron 11 of 18) -20307 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 153-42 chr4 97655539 97655850 + 0.666667 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 288768 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 211.333-24 chr2 17047837 17048180 + 0.666667 NA Intergenic Intergenic -382174 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 124.833-25 chr15 87422894 87423272 + 0.666667 NA Intergenic Intergenic -153846 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 180.334-3 chr16 47053325 47054032 + 0.666667 NA Intergenic AluSx|SINE|Alu -80004 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 155.5-19 chr16 54745248 54745638 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie 102790 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 132.667-56 chr2 225641966 225642269 + 0.666667 NA intron (NM_001371273, intron 6 of 7) L2b|LINE|L2 241231 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 288.333-3 chr18 2737905 2738660 + 0.666667 NA intron (NM_015295, intron 25 of 47) intron (NM_015295, intron 25 of 47) 82395 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 195.667-3 chr1 155932655 155932974 + 0.666667 NA intron (NM_014949, intron 2 of 13) AluSc|SINE|Alu 1599 NM_014949 22889 Hs.24656 NM_014949 ENSG00000132680 KHDC4 BLOM7|KIAA0907|SNORA80EHG KH domain containing 4, pre-mRNA splicing factor protein-coding 182.667-4 chr10 32998498 32999059 + 0.666667 NA Intergenic L1PA16|LINE|L1 -40548 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 119.667-7 chr10 33674293 33674587 + 0.666667 NA Intergenic Intergenic 98240 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 142.333-47 chr2 17223940 17224251 + 0.666667 NA Intergenic L1MA3|LINE|L1 294345 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 118.5-33 chr14 80085231 80085475 + 0.666667 NA Intergenic MER21C|LTR|ERVL -126066 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 120.667-43 chr15 62848224 62848445 + 0.666667 NA Intergenic MER103C|DNA|hAT-Charlie 24377 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 182.167-21 chr2 57621946 57622285 + 0.666667 NA Intergenic Intergenic -285536 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 158.5-54 chr3 113736696 113737082 + 0.666667 NA intron (NM_025146, intron 1 of 4) intron (NM_025146, intron 1 of 4) 9360 NM_025146 80218 Hs.372378 NM_025146 ENSG00000121579 NAA50 MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p N(alpha)-acetyltransferase 50, NatE catalytic subunit protein-coding 119-84 chr6 70384733 70384972 + 0.666667 NA Intergenic L1MA9|LINE|L1 -9350 NR_125857 101928353 NR_125857 EVADR - uncharacterized LOC101928353 ncRNA 197.333-36 chr3 39703317 39703778 + 0.666667 NA Intergenic L1M3d|LINE|L1 -105367 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 140.833 chr1 214103346 214103670 + 0.666667 NA Intergenic Intergenic 114975 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 423.5-2 chr20 11005750 11006907 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR -20216 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 185-40 chr5 100284751 100285088 + 0.666667 NA Intergenic L1MA1|LINE|L1 103335 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 141.667-50 chr2 158536362 158536624 + 0.666667 NA intron (NM_001005476, intron 2 of 20) intron (NM_001005476, intron 2 of 20) 79541 NM_003628 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 126.334-7 chr4 39094321 39094835 + 0.666667 NA intron (NM_199039, intron 4 of 9) L1M5|LINE|L1 32346 NM_199039 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 114.333-97 chr4 118839351 118839588 + 0.666667 NA Intergenic MER58B|DNA|hAT-Charlie -3343 NM_001318066 9871 Hs.189641 NM_014822 ENSG00000150961 SEC24D CLCRP2 SEC24 homolog D, COPII coat complex component protein-coding 122-30 chr18 12923846 12924199 + 0.666667 NA Intergenic Intergenic -23962 NM_031216 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 212-30 chr4 151327507 151327982 + 0.666667 NA Intergenic AluSg|SINE|Alu 50571 NM_183375 345062 Hs.651266 NM_183375 ENSG00000189099 PRSS48 ESSPL serine protease 48 protein-coding 161.5-12 chr15 67398883 67399209 + 0.666667 NA intron (NM_001031715, intron 13 of 20) intron (NM_001031715, intron 13 of 20) 121927 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 165.667-64 chr7 28168721 28169215 + 0.666667 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -11489 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 163.5-43 chr22 26351448 26351720 + 0.666667 NA intron (NM_001184777, intron 12 of 14) AluSz|SINE|Alu -77676 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 141-25 chr14 50005159 50005470 + 0.666667 NA non-coding (NR_126496, exon 1 of 5) non-coding (NR_126496, exon 1 of 5) 1205 NR_126496 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 121.333-72 chr4 17803157 17803411 + 0.666667 NA 3' UTR (NM_017741, exon 3 of 3) 3' UTR (NM_017741, exon 3 of 3) 7473 NR_144303 54876 Hs.614787 NM_017741 ENSG00000163257 DCAF16 C4orf30 DDB1 and CUL4 associated factor 16 protein-coding 138.667-69 chr4 95836192 95836541 + 0.666667 NA Intergenic Intergenic -3727 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 142.333-38 chr16 50856786 50857083 + 0.666667 NA Intergenic MLT1E2|LTR|ERVL-MaLR -21839 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 186.667-21 chr14 61741552 61742163 + 0.666667 NA intron (NM_181054, intron 12 of 13) intron (NM_181054, intron 12 of 13) 7232 NR_045406 100750247 Hs.597216 NR_045406 HIF1A-AS2 3'aHIF-1A|aHIF HIF1A antisense RNA 2 ncRNA 163-43 chr4 30597618 30597917 + 0.666667 NA Intergenic Intergenic -122602 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 136.167-56 chr4 37110444 37110752 + 0.666667 NA Intergenic Intergenic 108819 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 294.167-6 chr3 17554772 17555522 + 0.666667 NA intron (NM_001349075, intron 1 of 22) AluSc5|SINE|Alu 144873 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 144.333-62 chr4 60756432 60756805 + 0.666667 NA Intergenic L1M3|LINE|L1 -166001 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 115.667-55 chr2 144472623 144472805 + 0.666667 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -46900 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 205.333-13 chr14 84549902 84550402 + 0.666667 NA Intergenic L2a|LINE|L2 -721780 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 221.333-12 chr16 6145743 6146426 + 0.666667 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 126381 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 134-96 chr7 29599623 29599944 + 0.666667 NA Intergenic L3|LINE|CR1 34250 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 120.5-20 chr11 103318835 103319128 + 0.666667 NA intron (NM_001377, intron 80 of 88) intron (NM_001377, intron 80 of 88) 209555 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 174.5-44 chr6 168173106 168173443 + 0.666667 NA Intergenic MER65-int|LTR|ERV1 53243 NR_134590 105378137 Hs.549668 NR_134590 ENSG00000237987 LOC105378137 - uncharacterized LOC105378137 ncRNA 129.167-23 chr14 60297667 60298120 + 0.666667 NA 3' UTR (NM_177952, exon 6 of 6) 3' UTR (NM_177952, exon 6 of 6) -25303 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 139.667-81 chr6 64187764 64188076 + 0.666667 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 381084 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 114.333-73 chr2 209685279 209685604 + 0.666667 NA intron (NM_001039538, intron 7 of 14) intron (NM_001039538, intron 7 of 14) -86391 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 189.5-22 chr16 66806995 66807343 + 0.666667 NA intron (NM_001018159, intron 18 of 20) MLT1H1|LTR|ERVL-MaLR -5549 NM_001136505 283847 Hs.376505 NM_173616 ENSG00000249961 TERB1 CCDC79 telomere repeat binding bouquet formation protein 1 protein-coding 209.333-4 chr1 199672723 199673161 + 0.666667 NA Intergenic L2|LINE|L2 -354768 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 194.667-49 chr4 90811014 90811346 + 0.666667 NA intron (NM_001145065, intron 7 of 10) intron (NM_001145065, intron 7 of 10) 576149 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 171.5-36 chr2 145295926 145296403 + 0.666667 NA Intergenic Intergenic 628197 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 258.667-11 chr2 31088262 31089132 + 0.666667 NA intron (NM_001329095, intron 1 of 15) L2a|LINE|L2 40943 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 132-88 chr7 40235749 40236214 + 0.666667 NA intron (NM_024728, intron 6 of 14) intron (NM_024728, intron 6 of 14) 101005 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 214.333-32 chr4 32624538 32624959 + 0.666667 NA Intergenic LTR53-int|LTR|ERVL 273710 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 137.833-6 chr10 64475408 64475700 + 0.666667 NA Intergenic Intergenic -349974 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 223.5-3 chr1 213105870 213106303 + 0.666667 NA intron (NR_146208, intron 3 of 10) intron (NR_146208, intron 3 of 10) 54845 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 159.667-90 chr8 14555785 14556161 + 0.666667 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 297537 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 139-53 chr5 111271257 111271607 + 0.666667 NA intron (NM_001744, intron 1 of 10) MIR|SINE|MIR 47048 NM_001323377 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 276.334-2 chr5 23445675 23446297 + 0.666667 NA Intergenic Intergenic -61623 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 132.667-70 chr4 42725443 42725839 + 0.666667 NA Intergenic LTR82B|LTR|ERVL -68536 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 276.833-4 chr16 8524473 8524968 + 0.666667 NA Intergenic Intergenic 65118 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 145.333-59 chr5 5737792 5738123 + 0.666667 NA Intergenic MamGyp-int|LTR|Gypsy 315280 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 163-59 chr7 91202557 91202996 + 0.666667 NA intron (NM_012395, intron 13 of 13) intron (NM_012395, intron 13 of 13) -61657 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 125.333-54 chr16 86193770 86194133 + 0.666667 NA Intergenic MIR|SINE|MIR -2230 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 121.333-91 chr6 46503453 46503652 + 0.666667 NA intron (NR_125837, intron 1 of 2) intron (NR_125837, intron 1 of 2) -11485 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 147-76 chr6 125778837 125779272 + 0.666667 NA Intergenic AluY|SINE|Alu -2061 NM_001199620 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 202.833-12 chr17 7865970 7866531 + 0.666667 NA intron (NM_001330111, intron 3 of 4) AluY|SINE|Alu 8247 NM_144607 124637 Hs.27475 NM_144607 ENSG00000182224 CYB5D1 - cytochrome b5 domain containing 1 protein-coding 233.5-8 chr15 38248482 38248951 + 0.666667 NA Intergenic Intergenic -4120 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 121.167-35 chr18 33795818 33796038 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL 217709 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 222.333-21 chr22 35132434 35133031 + 0.666667 NA intron (NR_126356, intron 4 of 5) MIRb|SINE|MIR 66574 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 149.167-52 chr6 53913230 53913586 + 0.666667 NA intron (NM_018214, intron 10 of 13) intron (NM_018214, intron 10 of 13) -16574 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 145-71 chr5 132768648 132769042 + 0.666667 NA intron (NM_001098813, intron 1 of 9) MLT1K|LTR|ERVL-MaLR 8394 NM_001300798 23176 Hs.522057 NM_015146 ENSG00000164402 SEPTIN8 SEP2|SEPT8 septin 8 protein-coding 127.833-67 chr6 146025426 146025835 + 0.666667 NA Intergenic Intergenic -2077 NM_001278065 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 128.833-76 chr5 150686849 150687279 + 0.666667 NA Intergenic MER47A|DNA|TcMar-Tigger 13998 NM_018047 55696 Hs.713564 NM_018047 ENSG00000086589 RBM22 Cwc2|ZC3H16|fSAP47 RNA binding motif protein 22 protein-coding 177-3 chr1 164426063 164426372 + 0.666667 NA Intergenic Intergenic -133143 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 116.667-100 chr7 14503150 14503424 + 0.666667 NA intron (NM_001350717, intron 19 of 24) intron (NM_001350717, intron 19 of 24) 338163 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 158.333-67 chr8 58866617 58866886 + 0.666667 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) -206898 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 147-6 chr1 226200864 226201194 + 0.666667 NA Intergenic Intergenic -14288 NM_022735 64746 Hs.520207 NM_022735 ENSG00000182827 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 233.5-11 chr2 62393135 62393585 + 0.666667 NA Intergenic MLT1C|LTR|ERVL-MaLR 112835 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 155.333-97 chr8 130194446 130194759 + 0.666667 NA intron (NM_001362925, intron 5 of 29) MER1B|DNA|hAT-Charlie 101931 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 243.667-12 chr14 68562193 68562665 + 0.666667 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 66358 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 121.333-42 chr2 12984568 12984795 + 0.666667 NA intron (NR_038434, intron 4 of 5) intron (NR_038434, intron 4 of 5) 22332 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 228.333-38 chr8 8535875 8536298 + 0.666667 NA Intergenic (TATTG)n|Simple_repeat|Simple_repeat -149647 NR_163138 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 118.667-36 chr16 50459900 50460166 + 0.666667 NA Intergenic MIR|SINE|MIR -64900 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 113.333-16 chr10 61503359 61503662 + 0.666667 NA Intergenic Intergenic 23469 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 295.333-18 chr8 134401562 134402316 + 0.666667 NA Intergenic MER1B|DNA|hAT-Charlie -196132 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 136.833-36 chr22 33263756 33264101 + 0.666667 NA Intergenic MIR|SINE|MIR 155399 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 156.5-41 chr18 11185154 11185429 + 0.666667 NA Intergenic FLAM_C|SINE|Alu -36529 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 129.667-6 chr10 19107850 19108251 + 0.666667 NA intron (NM_001142308, intron 5 of 39) L1MA6|LINE|L1 59249 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 140.333-75 chr6 111145184 111145395 + 0.666667 NA intron (NM_018593, intron 1 of 5) AluSx3|SINE|Alu 31455 NR_145796 109623478 NR_145796 SNORD166 - small nucleolar RNA, C/D box 166 snoRNA 133-47 chr2 120285382 120285709 + 0.666667 NA intron (NM_001369400, intron 2 of 4) L1PA4|LINE|L1 32693 NM_001369400 5899 Hs.469820 NM_002881 ENSG00000144118 RALB - RAS like proto-oncogene B protein-coding 148.333-20 chr11 105362132 105362506 + 0.666667 NA Intergenic Intergenic -222550 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 186.833-24 chr2 56359424 56359777 + 0.666667 NA intron (NM_001348515, intron 3 of 3) intron (NM_001348515, intron 3 of 3) -173830 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 137-27 chr12 127804136 127804521 + 0.666667 NA Intergenic Intergenic -77289 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 131.833-73 chr8 142646665 142646999 + 0.666667 NA Intergenic MER4-int|LTR|ERV1 8236 NR_134305 101928087 Hs.126101 NR_134305 ENSG00000277332 LOC101928087 - uncharacterized LOC101928087 ncRNA 146-16 chr12 44946068 44946331 + 0.666667 NA Intergenic Intergenic -32271 NM_001145110 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 138-51 chr2 53247737 53248053 + 0.666667 NA Intergenic L2b|LINE|L2 -519888 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 141.5-42 chr19 15506895 15507271 + 0.666667 NA Intergenic AluJo|SINE|Alu -1442 NM_173483 126410 Hs.156452 NM_173483 ENSG00000171954 CYP4F22 ARCI5|INLNE|LI3 cytochrome P450 family 4 subfamily F member 22 protein-coding 206.333-3 chr10 66195414 66196084 + 0.666667 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 624324 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 184.5-40 chr5 155876978 155877454 + 0.666667 NA Intergenic Intergenic -449541 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 232.666 chr2 2100925 2101620 + 0.666667 NA intron (NM_015025, intron 3 of 24) intron (NM_015025, intron 3 of 24) -217960 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 169.834-6 chr4 67799991 67800496 + 0.666667 NA Intergenic Intergenic -44157 NM_001012763 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 157.667-70 chr7 127381258 127381706 + 0.666667 NA intron (NM_176814, intron 3 of 5) intron (NM_176814, intron 3 of 5) 11226 NM_176814 168850 Hs.159006 NM_176814 ENSG00000048405 ZNF800 - zinc finger protein 800 protein-coding 135-66 chr4 11976159 11976508 + 0.666667 NA Intergenic Intergenic 193155 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 240.667-4 chr1 167924410 167924875 + 0.666667 NA intron (NM_001143674, intron 2 of 5) intron (NM_001143674, intron 2 of 5) -10508 NM_001297772 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 147.833-10 chr11 39764020 39764294 + 0.666667 NA Intergenic L2c|LINE|L2 528973 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 177.333-12 chr10 81539038 81539505 + 0.666667 NA Intergenic L1PB1|LINE|L1 -335923 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 155.667-83 chr8 103429610 103429938 + 0.666667 NA intron (NM_015420, intron 5 of 10) L1ME4c|LINE|L1 14388 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 215.333-2 chr1 215378469 215378864 + 0.666667 NA Intergenic Intergenic -188638 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 181.333-14 chr14 53529359 53529831 + 0.666667 NA Intergenic Intergenic 376241 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 147.333-40 chr2 68715893 68716167 + 0.666667 NA Intergenic Intergenic -18781 NM_001364819 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 144.5-69 chr4 167283044 167283433 + 0.666667 NA Intergenic Intergenic -48648 NM_001251967 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 207-16 chr16 61630580 61631088 + 0.666667 NA Intergenic Intergenic 405604 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 140-76 chr7 126019269 126019519 + 0.666667 NA Intergenic Intergenic -755103 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 185-6 chr10 64860157 64860562 + 0.666667 NA Intergenic Intergenic 34831 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 122.167-7 chr10 89830017 89830296 + 0.666667 NA non-coding (NR_038382, exon 2 of 4) non-coding (NR_038382, exon 2 of 4) 663 NR_038382 643529 Hs.618956 NR_038382 ENSG00000232229 LINC00865 - long intergenic non-protein coding RNA 865 ncRNA 133.5-23 chr14 67652627 67652954 + 0.666667 NA intron (NM_006370, intron 5 of 5) intron (NM_006370, intron 5 of 5) 21842 NM_006370 10490 Hs.741177 NM_006370 ENSG00000100568 VTI1B VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 vesicle transport through interaction with t-SNAREs 1B protein-coding 119.5-72 chr4 126036319 126036544 + 0.666667 NA Intergenic Intergenic 529172 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 153-13 chr11 38817445 38817919 + 0.666667 NA Intergenic FLAM_A|SINE|Alu 168824 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 169.667-70 chr8 50081714 50082188 + 0.666667 NA intron (NR_135798, intron 1 of 15) L1ME1|LINE|L1 -82180 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 192.667-7 chr1 245936073 245936582 + 0.666667 NA intron (NM_022743, intron 5 of 11) Charlie21a|DNA|hAT-Charlie 481085 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 273-10 chr5 27310602 27311390 + 0.666667 NA Intergenic MLT2F|LTR|ERVL -161296 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 137.667-67 chr3 24874900 24875232 + 0.666667 NA intron (NM_001290216, intron 2 of 10) L1MEd|LINE|L1 45743 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 132-62 chr4 101916938 101917182 + 0.666667 NA intron (NM_017935, intron 6 of 16) intron (NM_017935, intron 6 of 16) 103218 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 153.5-31 chr2 44027962 44028227 + 0.666667 NA Intergenic AluJb|SINE|Alu -32105 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 208-26 chr3 102250947 102251691 + 0.666667 NA Intergenic Intergenic 87614 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 132.833-3 chr1 90323660 90323909 + 0.666667 NA Intergenic L3|LINE|CR1 328674 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 115-47 chr21 27642595 27642953 + 0.666667 NA Intergenic MIRb|SINE|MIR -79605 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 155.333-36 chr17 50536804 50537248 + 0.666667 NA TTS (NR_135675) TTS (NR_135675) 1728 NR_135675 105371824 Hs.683630 NR_135675 ENSG00000250286 LOC105371824 - uncharacterized LOC105371824 ncRNA 131.833-26 chr17 48138940 48139322 + 0.666667 NA intron (NM_001075099, intron 11 of 12) AluSg|SINE|Alu 17380 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 151.333-81 chr7 92467190 92467723 + 0.666667 NA TTS (NM_001130925) TTS (NM_001130925) 3968 NM_014590 30816 NM_014590 ENSG00000242950 ERVW-1 ENV|ENVW|ERVWE1|HERV-7q|HERV-W-ENV|HERV7Q|HERVW|HERVWENV endogenous retrovirus group W member 1, envelope protein-coding 122.5-8 chr10 21110003 21110527 + 0.666667 NA intron (NM_001173484, intron 2 of 6) L1ME1|LINE|L1 -63725 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 144.333-24 chr12 97880490 97880900 + 0.666667 NA Intergenic Intergenic 58426 NR_039716 100616287 NR_039716 ENSG00000265861 MIR4495 - microRNA 4495 ncRNA 163.667-26 chr17 28870542 28871003 + 0.666667 NA Intergenic AluSq2|SINE|Alu -9042 NR_039885 100616385 NR_039885 ENSG00000284085 MIR4732 mir-4732 microRNA 4732 ncRNA 127.667-100 chr8 136872214 136872415 + 0.666667 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 341516 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 118.333-82 chr4 59703471 59703717 + 0.666667 NA Intergenic L2b|LINE|L2 690021 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 126.833-71 chr9 5536698 5536973 + 0.666667 NA intron (NM_025239, intron 3 of 6) Charlie2a|DNA|hAT-Charlie 26304 NM_025239 80380 Hs.532279 NM_025239 ENSG00000197646 PDCD1LG2 B7DC|Btdc|CD273|PD-L2|PDCD1L2|PDL2|bA574F11.2 programmed cell death 1 ligand 2 protein-coding 141-71 chr5 29324122 29324373 + 0.666667 NA Intergenic Intergenic 71729 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 174-30 chr2 113790780 113791058 + 0.666667 NA Intergenic MLT1H1|LTR|ERVL-MaLR -34277 NM_001330314 80255 Hs.355655 NM_025181 ENSG00000115084 SLC35F5 - solute carrier family 35 member F5 protein-coding 178.333-23 chr2 115068157 115068562 + 0.666667 NA intron (NM_001178037, intron 1 of 25) L1MA9|LINE|L1 3786 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 191.833-3 chr10 26913373 26914016 + 0.666667 NA Intergenic AluY|SINE|Alu 28307 NR_026795 387644 Hs.529965 NR_026795 ENSG00000283709 FAM238C C10orf51|LINC00202|LINC00202-1|NCRNA00202|bB27G4.1 family with sequence similarity 238 member C ncRNA 204.667-22 chr14 48107868 48108418 + 0.666667 NA Intergenic Intergenic -313129 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 175.333-67 chr8 129114796 129115133 + 0.666667 NA Intergenic MIR|SINE|MIR 126276 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 123.5-67 chr5 148116990 148117427 + 0.666667 NA intron (NM_006846, intron 22 of 32) intron (NM_006846, intron 22 of 32) -51338 NM_001001325 408187 Hs.553815 NM_001001325 ENSG00000196800 SPINK14 SPINK5L2 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding 275.667-13 chr18 73124349 73124894 + 0.666667 NA Intergenic Intergenic 139877 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 119.667-92 chr7 125501194 125501487 + 0.666667 NA Intergenic L1M1|LINE|L1 -237049 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 220.333-19 chr3 34688575 34689128 + 0.666667 NA Intergenic Intergenic 705172 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 220.333-28 chr6 87886885 87887397 + 0.666667 NA intron (NR_110869, intron 2 of 4) intron (NR_110869, intron 2 of 4) 102281 NR_110869 101928911 Hs.571178 NR_110869 LOC101928911 - uncharacterized LOC101928911 ncRNA 132.167-36 chr2 117122054 117122449 + 0.666667 NA Intergenic Intergenic -692440 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 130.333-9 chr10 12676892 12677218 + 0.666667 NA intron (NM_001351032, intron 5 of 11) intron (NM_001351032, intron 5 of 11) -23858 NR_039701 100616320 NR_039701 ENSG00000283699 MIR4481 - microRNA 4481 ncRNA 174.667-11 chr11 36235126 36235581 + 0.666667 NA Intergenic Intergenic 54071 NM_001101653 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 189-17 chr2 184702419 184702877 + 0.666667 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 104119 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 142.5-53 chr4 21316890 21317348 + 0.666667 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -13213 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 138.333-12 chr1 190832168 190832394 + 0.666667 NA Intergenic MLT1F|LTR|ERVL-MaLR 207391 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 125.667-73 chr22 26304492 26304738 + 0.666667 NA intron (NM_001184776, intron 5 of 14) intron (NM_001184776, intron 5 of 14) -124645 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 192.667-35 chr3 79200438 79200905 + 0.666667 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -181212 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 167.667-86 chr8 56755616 56756048 + 0.666667 NA Intergenic Intergenic -196009 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 206.5-9 chr14 37213481 37214195 + 0.666667 NA intron (NM_001195296, intron 2 of 14) L1M1|LINE|L1 15901 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 146.167 chr1 57482066 57482461 + 0.666667 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -57342 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 149.333-96 chr8 97698034 97698337 + 0.666667 NA intron (NM_001363137, intron 7 of 12) intron (NM_001363137, intron 7 of 12) 54001 NM_001363139 92140 Hs.377155 NM_178812 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 235.167-14 chr20 14799451 14800104 + 0.666667 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 129741 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 133-65 chr4 85271009 85271311 + 0.666667 NA Intergenic L1PA16|LINE|L1 -203990 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 175-53 chr6 53094948 53095295 + 0.666667 NA intron (NM_033481, intron 11 of 12) intron (NM_033481, intron 11 of 12) 24148 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 117.333-7 chr1 95639775 95640083 + 0.666667 NA Intergenic Arthur1A|DNA|hAT-Tip100 129813 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 129.667-36 chr14 75668994 75669221 + 0.666667 NA intron (NM_015072, intron 2 of 31) MLT1K|LTR|ERVL-MaLR 7861 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 151-78 chr8 98838305 98838711 + 0.666667 NA intron (NM_001256312, intron 3 of 12) intron (NM_001256312, intron 3 of 12) -12820 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 205.5-31 chr4 42460768 42461162 + 0.666667 NA intron (NM_001105529, intron 26 of 35) intron (NM_001105529, intron 26 of 35) 63477 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 246.167-25 chr5 105614682 105615288 + 0.666667 NA Intergenic Intergenic 515511 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 289-8 chr22 40911313 40912061 + 0.666667 NA intron (NM_022098, intron 6 of 9) AluSq2|SINE|Alu -39691 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 114.667-131 chr8 144305426 144305720 + 0.666667 NA intron (NM_005526, intron 1 of 12) AluSc|SINE|Alu 11742 NR_106907 102465511 NR_106907 ENSG00000284229 MIR6848 hsa-mir-6848 microRNA 6848 ncRNA 253.333-15 chr4 156053527 156053967 + 0.666667 NA Intergenic L1MC3|LINE|L1 -99881 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 135.833-28 chr18 67318656 67319049 + 0.666667 NA Intergenic Intergenic -197694 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 181-44 chr3 98739655 98740162 + 0.666667 NA intron (NM_001323366, intron 1 of 11) intron (NM_001323366, intron 1 of 11) 6452 NM_001323366 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 167-27 chr17 56825891 56826277 + 0.666667 NA intron (NM_001085430, intron 2 of 7) AluSz|SINE|Alu 7836 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 150-83 chr8 85409305 85409572 + 0.666667 NA Intergenic L1MB7|LINE|L1 -29421 NM_005181 761 Hs.82129 NM_005181 ENSG00000164879 CA3 CAIII|Car3 carbonic anhydrase 3 protein-coding 136-27 chr17 42942717 42942978 + 0.666667 NA Intergenic AluJr|SINE|Alu 21607 NM_001261434 80755 Hs.317403 NM_001261434 ENSG00000266967 AARSD1 - alanyl-tRNA synthetase domain containing 1 protein-coding 131.5-45 chr20 45256079 45256507 + 0.666667 NA Intergenic Intergenic -1729 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 118.667-53 chr2 7153096 7153400 + 0.666667 NA Intergenic L1MEc|LINE|L1 -75368 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 202-9 chr13 46731217 46731627 + 0.666667 NA intron (NM_001164213, intron 17 of 18) AluSx1|SINE|Alu 65739 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 158.5-72 chr6 74231522 74231989 + 0.666667 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 162304 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 156-23 chr14 20138664 20139095 + 0.666667 NA Intergenic Intergenic -4857 NM_001004724 390437 Hs.553766 NM_001004724 ENSG00000184394 OR4N5 - olfactory receptor family 4 subfamily N member 5 protein-coding 132-10 chr10 9466347 9466663 + 0.666667 NA Intergenic L1MB7|LINE|L1 -170912 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 117.333-37 chr17 65026221 65026441 + 0.666667 NA intron (NM_006572, intron 2 of 3) intron (NM_006572, intron 2 of 3) 29443 NM_001282425 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 292.833-8 chr2 162579805 162580429 + 0.666667 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -188819 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 186-16 chr15 37903549 37903967 + 0.666667 NA Intergenic Intergenic -30849 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 156.333-58 chr22 41703827 41704199 + 0.666667 NA intron (NM_152513, intron 2 of 30) intron (NM_152513, intron 2 of 30) 4510 NM_152513 150365 Hs.116419 NM_152513 ENSG00000167077 MEI1 HYDM3|SPATA38 meiotic double-stranded break formation protein 1 protein-coding 133.667-61 chr3 66673042 66673301 + 0.666667 NA Intergenic Intergenic 65165 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 160-19 chr12 12874139 12874458 + 0.666667 NA Intergenic Intergenic -1179 NR_003932 387841 Hs.631728 NR_003932 ENSG00000234498 RPL13AP20 RPL13A_9_1211 ribosomal protein L13a pseudogene 20 pseudo 117-110 chr7 38070217 38070433 + 0.666667 NA Intergenic Intergenic -107920 NM_001363347 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 118.167-14 chr12 80804824 80805073 + 0.666667 NA intron (NM_004664, intron 5 of 5) L1MA2|LINE|L1 27681 NR_030348 693202 NR_030348 ENSG00000207763 MIR617 MIRN617|hsa-mir-617 microRNA 617 ncRNA 195.333-59 chr8 53851921 53852276 + 0.666667 NA intron (NM_001286674, intron 1 of 2) intron (NM_001286674, intron 1 of 2) 303 NM_001286675 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 234-9 chr12 21740325 21741026 + 0.666667 NA Intergenic L1MB2|LINE|L1 34031 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 177-69 chr8 126420637 126421029 + 0.666667 NA Intergenic MIRb|SINE|MIR 95338 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 126.667-45 chr2 221709206 221709701 + 0.666667 NA Intergenic Intergenic -135251 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 150-73 chr6 125734835 125735266 + 0.666667 NA Intergenic L2c|LINE|L2 -14582 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 179.167-36 chr5 4705597 4705941 + 0.666667 NA Intergenic L1MD|LINE|L1 -67712 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 135.833-37 chr2 216335046 216335551 + 0.666667 NA intron (NM_020814, intron 1 of 3) intron (NM_020814, intron 1 of 3) 37185 NM_020814 57574 Hs.170388 NM_020814 ENSG00000144583 MARCH4 MARCH-IV|RNF174 membrane associated ring-CH-type finger 4 protein-coding 205.167-13 chr14 33631269 33631716 + 0.666667 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) -77445 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 168-61 chr5 130906890 130907296 + 0.666667 NA Intergenic Intergenic 258163 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 197.333-23 chr16 86112190 86112669 + 0.666667 NA Intergenic Intergenic -83752 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 179.667-7 chr11 31640797 31641186 + 0.666667 NA intron (NM_001288725, intron 7 of 10) intron (NM_001288725, intron 7 of 10) 131224 NM_001288726 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 196.167-36 chr8 105941879 105942444 + 0.666667 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 118342 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 278-10 chr3 72376291 72376915 + 0.666667 NA 3' UTR (NM_012234, exon 4 of 4) 3' UTR (NM_012234, exon 4 of 4) 70020 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 149-42 chr2 157211726 157212075 + 0.666667 NA Intergenic L1MEf|LINE|L1 -45805 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 164-3 chr1 166475346 166475773 + 0.666667 NA TTS (NR_146890) TTS (NR_146890) 14480 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 179-32 chr22 36137031 36137408 + 0.666667 NA Intergenic Intergenic 23536 NM_014349 80833 Hs.474737 NM_014349 ENSG00000128284 APOL3 APOLIII|CG121|CG12_1|apoL-III apolipoprotein L3 protein-coding 116-101 chrX 57541210 57541497 + 0.666667 NA Intergenic L1M1|LINE|L1 -50483 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 142.667-76 chr4 161927676 161928009 + 0.666667 NA intron (NM_001128428, intron 3 of 14) L1MC2|LINE|L1 -94891 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 158.5-69 chr6 38741087 38741506 + 0.666667 NA intron (NM_001371, intron 6 of 91) AluJr|SINE|Alu 25985 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 115.333-8 chr1 197927023 197927299 + 0.666667 NA intron (NM_001370213, intron 3 of 4) intron (NM_001370213, intron 3 of 4) 9789 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 131.667-36 chr14 75233136 75233409 + 0.666667 NA Intergenic AluJo|SINE|Alu -45556 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 192.667-8 chr10 23079724 23080096 + 0.666667 NA Intergenic L2|LINE|L2 -15669 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 171-65 chr8 124387649 124388175 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR -15213 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 157.667-18 chr12 120119573 120119958 + 0.666667 NA Intergenic Intergenic -3012 NM_001167606 11021 Hs.524788 NM_006861 ENSG00000111737 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 162.5-5 chr1 225539020 225539423 + 0.666667 NA intron (NM_001008493, intron 3 of 14) intron (NM_001008493, intron 3 of 14) -110366 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 144.333-98 chrX 149717107 149717587 + 0.666667 NA TTS (NM_005366) TTS (NM_005366) 5287 NM_005366 4110 Hs.670252 NM_005366 ENSG00000185247 MAGEA11 CT1.11|MAGE-11|MAGE11|MAGEA-11 MAGE family member A11 protein-coding 159.667-89 chr8 8314920 8315396 + 0.666667 NA Intergenic LTR62|LTR|ERVL 71086 NM_001369759 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 124.667-46 chr17 52989608 52989842 + 0.666667 NA Intergenic Intergenic 4220 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 159-42 chr2 97798265 97798778 + 0.666667 NA intron (NM_015348, intron 25 of 40) intron (NM_015348, intron 25 of 40) 64115 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 121.333-58 chr20 60766443 60766763 + 0.666667 NA Intergenic Intergenic 202041 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 174-18 chr13 52979093 52979541 + 0.666667 NA Intergenic Intergenic -49496 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 200.333-20 chr2 185231295 185231652 + 0.666667 NA Intergenic Intergenic -64401 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 150.333-102 chr8 105127680 105128126 + 0.666667 NA Intergenic Intergenic -190535 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 187.333-28 chr18 55796921 55797309 + 0.666667 NA Intergenic Intergenic -15390 NR_145452 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 176.5-10 chr11 42016114 42016522 + 0.666667 NA intron (NR_135065, intron 8 of 9) intron (NR_135065, intron 8 of 9) 69140 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 124.167-96 chr9 78071744 78072149 + 0.666667 NA Intergenic Intergenic -40135 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 123.167-13 chr10 64377667 64377957 + 0.666667 NA Intergenic Intergenic -447716 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 114.333-107 chr6 28392549 28392751 + 0.666667 NA intron (NR_136512, intron 3 of 5) intron (NR_136512, intron 3 of 5) 6116 NM_001368124 9753 Hs.134816 NM_014724 ENSG00000158691 ZSCAN12 ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2 zinc finger and SCAN domain containing 12 protein-coding 150.167-19 chr15 84033330 84033602 + 0.666667 NA intron (NM_207517, intron 28 of 29) AluSz|SINE|Alu -46721 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 205.334-8 chr5 15326775 15327355 + 0.666667 NA Intergenic Intergenic -60505 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 202.167-9 chr12 13449587 13450146 + 0.666667 NA Intergenic L2b|LINE|L2 -73121 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 127.167-32 chr14 62695791 62696223 + 0.666667 NA Intergenic Intergenic 349451 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 132.167-27 chr17 43699685 43700033 + 0.666667 NA Intergenic Intergenic -37937 NM_004527 4222 Hs.438 NM_004527 ENSG00000005102 MEOX1 KFS2|MOX1 mesenchyme homeobox 1 protein-coding 134.333-99 chr8 15649958 15650236 + 0.666667 NA intron (NM_001356429, intron 2 of 10) intron (NM_001356429, intron 2 of 10) 109834 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 116.667-74 chr3 70536808 70537027 + 0.666667 NA Intergenic Tigger19a|DNA|TcMar-Tigger -224279 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 130.167-52 chr3 144400007 144400355 + 0.666667 NA Intergenic L1MA2|LINE|L1 427100 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 183.833-11 chr14 57354134 57354716 + 0.666667 NA Intergenic L1MB5|LINE|L1 -36161 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 182.333-78 chr9 87107210 87107754 + 0.666667 NA Intergenic Intergenic -22257 NR_036691 494127 Hs.626316 NR_036691 LOC494127 - NFYC pseudogene pseudo 321-3 chr12 8078281 8078902 + 0.666667 NA Intergenic Intergenic -3620 NR_024260 25977 Hs.555927 NM_015509 ENSG00000089818 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 232.834-5 chr4 79422883 79423460 + 0.666667 NA Intergenic L2a|LINE|L2 -14943 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 253.334 chr1 98745721 98746287 + 0.666667 NA intron (NM_015976, intron 8 of 8) intron (NM_015976, intron 8 of 8) 84283 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 156.333-82 chr7 19022463 19022841 + 0.666667 NA Intergenic ERVL-B4-int|LTR|ERVL 94984 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 129.667-26 chr12 123739514 123739904 + 0.666667 NA intron (NM_012463, intron 9 of 19) HAL1M8|LINE|L1 -22786 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 166.333-41 chr2 130807006 130807475 + 0.666667 NA Intergenic MIRb|SINE|MIR -29674 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 128.667-24 chr11 32647227 32647465 + 0.666667 NA intron (NM_001008391, intron 12 of 17) MSTB|LTR|ERVL-MaLR 63515 NM_001307929 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 149.833-42 chr5 76541944 76542168 + 0.666667 NA intron (NM_006633, intron 2 of 35) AluJb|SINE|Alu -5353 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 142.167-21 chr13 62205281 62205539 + 0.666667 NA Intergenic LOR1a|LTR|ERV1 -6872 NR_125787 103752583 Hs.578048 NR_125787 LINC01075 - long intergenic non-protein coding RNA 1075 ncRNA 214.167-20 chr3 103339617 103340021 + 0.666667 NA Intergenic Intergenic 184297 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 162.5-41 chr20 59869810 59870159 + 0.666667 NA intron (NM_014258, intron 35 of 44) intron (NM_014258, intron 35 of 44) 63653 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 216.167-25 chr6 23945727 23946345 + 0.666667 NA Intergenic L1ME3B|LINE|L1 -180179 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 119.5-95 chr7 23707277 23707509 + 0.666667 NA Intergenic L1ME1|LINE|L1 -2826 NM_031414 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 151.167-24 chr19 36366654 36366895 + 0.666667 NA intron (NM_001297619, intron 2 of 4) L1ME3A|LINE|L1 12427 NM_020917 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 214-36 chr5 83466441 83467007 + 0.666667 NA Intergenic MamSINE1|SINE|tRNA-RTE -4950 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 150-31 chr19 34391590 34391970 + 0.666667 NA intron (NM_001329910, intron 10 of 18) intron (NM_001329910, intron 10 of 18) -12618 NM_001353433 84306 Hs.515344 NM_032346 ENSG00000126249 PDCD2L - programmed cell death 2 like protein-coding 113.834 chr14 68217776 68218284 + 0.666667 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 394438 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 127.833-44 chr20 34333915 34334203 + 0.666667 NA Intergenic Intergenic -22257 NM_001161766 191 Hs.388004 NM_000687 ENSG00000101444 AHCY SAHH|adoHcyase adenosylhomocysteinase protein-coding 118.333-7 chr1 167146085 167146341 + 0.666667 NA Intergenic Tigger3a|DNA|TcMar-Tigger 49592 NR_110811 101928484 Hs.568496 NR_110811 LINC01363 RBSG4 long intergenic non-protein coding RNA 1363 ncRNA 125-65 chr5 62972702 62973006 + 0.666667 NA Intergenic Intergenic 394035 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 198.167-13 chr17 65897882 65898457 + 0.666667 NA intron (NM_001353129, intron 20 of 26) intron (NM_001353129, intron 20 of 26) -71626 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 155.667-80 chr8 57139415 57139786 + 0.666667 NA Intergenic Intergenic -78676 NR_038235 100507651 Hs.371831 NR_038235 ENSG00000253301 LINC01606 - long intergenic non-protein coding RNA 1606 ncRNA 170.167-13 chr12 80805913 80806354 + 0.666667 NA intron (NM_004664, intron 5 of 5) THE1A|LTR|ERVL-MaLR 26496 NR_030348 693202 NR_030348 ENSG00000207763 MIR617 MIRN617|hsa-mir-617 microRNA 617 ncRNA 153-3 chr1 112921826 112922239 + 0.666667 NA exon (NM_001166496, exon 3 of 5).2 exon (NM_001166496, exon 3 of 5).2 -1318 NR_002796 246182 Hs.647691 NR_002796 AKR7A2P1 AFARP1 aldo-keto reductase family 7 member A2 pseudogene 1 pseudo 115.167-2 chr1 42710781 42711036 + 0.666667 NA Intergenic AluSx1|SINE|Alu 27772 NR_132737 4904 Hs.473583 NM_004559 ENSG00000065978 YBX1 BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 Y-box binding protein 1 protein-coding 217.667-20 chr18 13359186 13359581 + 0.666667 NA intron (NM_181482, intron 2 of 5) L3|LINE|CR1 68151 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 191.333 chr10 54878985 54879344 + 0.666667 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) -77873 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 129.167-58 chr5 37814362 37814885 + 0.666667 NA 3' UTR (NM_001278098, exon 3 of 3) 3' UTR (NM_001278098, exon 3 of 3) 20199 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 249.667-3 chr1 238747314 238747779 + 0.666667 NA Intergenic MER52-int|LTR|ERV1 -261529 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 167.833-26 chr2 23370822 23371142 + 0.666667 NA Intergenic Intergenic -14197 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 131.333-46 chr2 16290344 16290711 + 0.666667 NA Intergenic MER21B|LTR|ERVL 240100 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 179.667-4 chr10 23631662 23632123 + 0.666667 NA Intergenic L1M4|LINE|L1 -62835 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 207.333-53 chr8 116745386 116745864 + 0.666667 NA intron (NM_003756, intron 1 of 7) intron (NM_003756, intron 1 of 7) 10198 NM_003756 8667 Hs.492599 NM_003756 ENSG00000147677 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3 subunit H protein-coding 192.667-32 chr20 24374604 24375121 + 0.666667 NA Intergenic L1M5|LINE|L1 -94337 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 251-23 chr6 76464489 76464914 + 0.666667 NA Intergenic Intergenic 128922 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 253.334-4 chr3 130389163 130389791 + 0.666667 NA intron (NM_001278298, intron 6 of 40) intron (NM_001278298, intron 6 of 40) 43961 NM_153264 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 154-41 chr2 144015613 144015896 + 0.666667 NA intron (NM_001354355, intron 7 of 13) MamTip2|DNA|hAT-Tip100 78687 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 204.333-62 chrX 94728672 94729140 + 0.666667 NA Intergenic AluSx|SINE|Alu 334320 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 179.833-33 chr8 130619631 130620411 + 0.666667 NA Intergenic L1M1|LINE|L1 -176347 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 207.167-27 chr6 69933872 69934463 + 0.666667 NA intron (NM_001858, intron 7 of 50) intron (NM_001858, intron 7 of 50) 67611 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 176-11 chr16 47408955 47409381 + 0.666667 NA intron (NM_030790, intron 6 of 17) LTR81A|LTR|Gypsy 51895 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 138.667-58 chr3 81242781 81243083 + 0.666667 NA Intergenic Intergenic 249064 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 203.167-17 chr14 52423257 52423851 + 0.666667 NA Intergenic Intergenic 109242 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 167-13 chr11 23742341 23742625 + 0.666667 NA Intergenic L1PB4|LINE|L1 -323293 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 171.5-49 chr5 15720485 15720847 + 0.666667 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -105664 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 127.167-55 chr3 78824221 78824642 + 0.666667 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 195028 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 206.333-13 chr19 48431395 48431756 + 0.666667 NA intron (NM_000836, intron 10 of 12) HAL1|LINE|L1 -14408 NM_031485 83743 Hs.400625 NM_031485 ENSG00000105447 GRWD1 CDW4|GRWD|RRB1|WDR28 glutamate rich WD repeat containing 1 protein-coding 133.333-110 chr6 141046541 141046914 + 0.666667 NA Intergenic L1PA16|LINE|L1 362913 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 232.5-4 chr12 15051699 15052187 + 0.666667 NA Intergenic Intergenic 50110 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 147.167-30 chr2 102303405 102303819 + 0.666667 NA Intergenic Intergenic -7890 NM_001282408 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 173.167-36 chr5 160729185 160729601 + 0.666667 NA intron (NM_001366652, intron 2 of 24) intron (NM_001366652, intron 2 of 24) -44002 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 281.333-3 chr15 69965086 69965879 + 0.666667 NA Intergenic Intergenic 113986 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 339.333-4 chr8 126286941 126288020 + 0.666667 NA Intergenic Intergenic -38015 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 125.333-44 chr14 61637163 61637473 + 0.666667 NA intron (NR_039985, intron 1 of 2) BLACKJACK|DNA|hAT-Blackjack -58195 NM_001530 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 213.333-5 chr10 66260374 66260892 + 0.666667 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) -665403 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 239-15 chr6 48725381 48725936 + 0.666667 NA Intergenic L1MA4|LINE|L1 -656969 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 155.667-20 chr11 18101410 18101753 + 0.666667 NA intron (NM_138421, intron 2 of 11) THE1D|LTR|ERVL-MaLR 4501 NM_138421 113174 Hs.591998 NM_138421 ENSG00000166788 SAAL1 SPACIA1 serum amyloid A like 1 protein-coding 172-50 chr4 73482091 73482407 + 0.666667 NA intron (NM_001133, intron 1 of 14) intron (NM_001133, intron 1 of 14) 504 NM_001133 173 Hs.168718 NM_001133 ENSG00000079557 AFM ALB2|ALBA|ALF afamin protein-coding 294-9 chr20 47315102 47315705 + 0.666667 NA intron (NM_001281774, intron 3 of 23) intron (NM_001281774, intron 3 of 23) -3099 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 147.667-34 chr20 32885793 32886111 + 0.666667 NA intron (NM_001143967, intron 6 of 26) intron (NM_001143967, intron 6 of 26) 27029 NM_001143967 388795 NM_001143967 ENSG00000215529 EFCAB8 - EF-hand calcium binding domain 8 protein-coding 123.5-43 chr2 44098826 44099213 + 0.666667 NA Intergenic Intergenic -69784 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 179.5-30 chr7 19873854 19874322 + 0.666667 NA Intergenic Intergenic -100471 NM_001366628 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 118-95 chr5 82242355 82242569 + 0.666667 NA intron (NM_031482, intron 5 of 7) L1MEd|LINE|L1 35892 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 178.167-27 chr2 196425604 196425949 + 0.666667 NA intron (NM_020760, intron 2 of 28) Tigger1|DNA|TcMar-Tigger -63599 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 195.167-34 chr6 131481474 131482000 + 0.666667 NA Intergenic L1MA5A|LINE|L1 -91489 NM_001369020 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 242-10 chr2 19755823 19756240 + 0.666667 NA Intergenic Intergenic -112823 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 225.167-2 chr1 151738527 151739069 + 0.666667 NA Intergenic AluSc5|SINE|Alu 17276 NM_001144956 284485 Hs.297967 NM_001144956 ENSG00000178796 RIIAD1 C1orf230|NCRNA00166 regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 protein-coding 239.667-28 chr5 51801443 51801841 + 0.666667 NA Intergenic Intergenic -206389 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 113.333-40 chr15 49036378 49036614 + 0.666667 NA intron (NM_001193489, intron 2 of 17) intron (NM_001193489, intron 2 of 17) 9950 NM_014701 9728 Hs.9997 NM_014701 ENSG00000138593 SECISBP2L SBP2L|SLAN SECIS binding protein 2 like protein-coding 186.667-16 chr12 82060122 82060546 + 0.666667 NA Intergenic Intergenic 106615 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 154-52 chr3 84255617 84255999 + 0.666667 NA Intergenic Intergenic 613767 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 206.667-41 chr5 105938944 105939492 + 0.666667 NA Intergenic MER61B|LTR|ERV1 839744 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 155.333-103 chrX 22697776 22698280 + 0.666667 NA intron (NR_073010, intron 4 of 11) L1MC5a|LINE|L1 -301932 NM_182699 168400 Hs.434416 NM_182699 ENSG00000184735 DDX53 CAGE|CT26 DEAD-box helicase 53 protein-coding 182.5-31 chr4 53507069 53507446 + 0.666667 NA intron (NR_046622, intron 3 of 3) intron (NR_046622, intron 3 of 3) 7180 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 152-31 chr2 63138932 63139287 + 0.666667 NA intron (NR_148704, intron 18 of 18) (TA)n|Simple_repeat|Simple_repeat -19567 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 164-21 chr16 83873205 83873679 + 0.666667 NA Intergenic L1MA9|LINE|L1 -25673 NM_012213 23417 Hs.644610 NM_012213 ENSG00000103150 MLYCD MCD malonyl-CoA decarboxylase protein-coding 197.5-6 chr10 6070034 6070452 + 0.666667 NA Intergenic AluSx1|SINE|Alu -7873 NM_000417 3559 Hs.231367 NM_000417 ENSG00000134460 IL2RA CD25|IDDM10|IL2R|IMD41|TCGFR|p55 interleukin 2 receptor subunit alpha protein-coding 119.333-50 chr2 53188121 53188408 + 0.666667 NA Intergenic Intergenic -485649 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 265.833-8 chr2 107277792 107278575 + 0.666667 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 71342 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 187.333-84 chrX 40860970 40861453 + 0.666667 NA Intergenic MSTC-int|LTR|ERVL-MaLR -28015 NR_027761 100132831 Hs.729923 NR_027761 LOC100132831 - A20-binding inhibitor of NF-kappaB activation 2 pseudogene pseudo 145.667-34 chr14 83906826 83907139 + 0.666667 NA Intergenic Intergenic 1264350 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 195.667-39 chr7 41574373 41574697 + 0.666667 NA Intergenic Intergenic -119384 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 123.833-38 chr3 30988562 30988828 + 0.666667 NA Intergenic Intergenic -94034 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 146.667-31 chr14 40655948 40656223 + 0.666667 NA Intergenic Intergenic -298626 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 143.333-8 chr10 117051659 117052003 + 0.666667 NA intron (NM_001258300, intron 1 of 17) L1MB5|LINE|L1 -46254 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 171.167-41 chr4 113728605 113729199 + 0.666667 NA intron (NM_001321585, intron 2 of 19) intron (NM_001321585, intron 2 of 19) 32836 NM_001321591 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 161-50 chr5 19887096 19887355 + 0.666667 NA promoter-TSS (NM_001291957) promoter-TSS (NM_001291957) -953 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 146.833-56 chr7 16579206 16579467 + 0.666667 NA intron (NM_001195280, intron 7 of 8) intron (NM_001195280, intron 7 of 8) 52511 NM_001195280 100506049 Hs.278036 NM_001195280 ENSG00000205858 LRRC72 - leucine rich repeat containing 72 protein-coding 132.667-38 chr15 96531446 96531745 + 0.666667 NA Intergenic Intergenic 197830 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 162.333-15 chr12 102565005 102565364 + 0.666667 NA Intergenic Intergenic -84621 NM_000618 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 166.5-24 chr17 40632289 40632626 + 0.666667 NA intron (NM_003079, intron 7 of 10) intron (NM_003079, intron 7 of 10) 15361 NM_003079 6605 Hs.743978 NM_003079 ENSG00000073584 SMARCE1 BAF57|CSS5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding 177.833-29 chr4 35659573 35659908 + 0.666667 NA Intergenic Intergenic 584199 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 176.333-40 chr22 29946986 29947427 + 0.666667 NA intron (NM_153051, intron 1 of 18) intron (NM_153051, intron 1 of 18) -59843 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 133.667-103 chr9 81841392 81841660 + 0.666667 NA Intergenic Intergenic -71911 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D member 5, pseudogene pseudo 137.833-58 chr9 28842525 28843030 + 0.666667 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 20929 NR_030597 100126310 NR_030597 ENSG00000215966 MIR876 MIRN876|hsa-mir-876|mir-876 microRNA 876 ncRNA 125.667-44 chr17 69387712 69387975 + 0.666667 NA Intergenic MER20|DNA|hAT-Charlie -26854 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 143-27 chr16 69760956 69761222 + 0.666667 NA Intergenic AluSq|SINE|Alu -1243 NM_001270454 11060 Hs.408458 NM_007014 ENSG00000198373 WWP2 AIP2|WWp2-like WW domain containing E3 ubiquitin protein ligase 2 protein-coding 123.333-29 chr12 13063127 13063492 + 0.666667 NA intron (NM_020853, intron 5 of 12) MIRb|SINE|MIR 18928 NM_020853 57613 Hs.132660 NM_020853 ENSG00000084444 FAM234B KIAA1467 family with sequence similarity 234 member B protein-coding 126-22 chr13 36229191 36229443 + 0.666667 NA intron (NM_001198910, intron 5 of 15) MIRc|SINE|MIR -14702 NM_001282147 54937 Hs.124519 NM_017826 ENSG00000120669 SOHLH2 SOSF2|SPATA28|TEB1|bHLHe81 spermatogenesis and oogenesis specific basic helix-loop-helix 2 protein-coding 130-51 chr2 96193379 96193773 + 0.666667 NA intron (NM_020151, intron 3 of 7) intron (NM_020151, intron 3 of 7) -14840 NR_046322 285033 Hs.58648 NM_001037228 STARD7-AS1 - STARD7 antisense RNA 1 ncRNA 132-46 chr2 220290963 220291275 + 0.666667 NA Intergenic (ATATAT)n|Simple_repeat|Simple_repeat -384554 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 193.333-19 chr15 75957942 75958489 + 0.666667 NA intron (NM_138573, intron 4 of 5) AluY|SINE|Alu 54209 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 140-43 chr20 61303790 61304198 + 0.666667 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) 51733 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 140.333-14 chr11 27840691 27841060 + 0.666667 NA Intergenic Intergenic -118845 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 156.333-36 chr17 13648519 13648913 + 0.666667 NA Intergenic Intergenic -46787 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 137.667-24 chr12 110269319 110269721 + 0.666667 NA Intergenic Intergenic -11727 NM_001681 488 Hs.506759 NM_001681 ENSG00000174437 ATP2A2 ATP2B|DAR|DD|SERCA2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 protein-coding 182.333-48 chr4 114681324 114681831 + 0.666667 NA Intergenic Intergenic 24818 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 150-45 chr2 237095442 237095720 + 0.666667 NA intron (NM_198189, intron 6 of 8) intron (NM_198189, intron 6 of 8) 9692 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 156.333-66 chr3 171084707 171085039 + 0.666667 NA intron (NM_001161563, intron 24 of 31) intron (NM_001161563, intron 24 of 31) 21886 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 187.333-63 chr4 168237674 168238069 + 0.666667 NA intron (NM_017631, intron 30 of 37) intron (NM_017631, intron 30 of 37) 80881 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 216.667-14 chr14 67938382 67938938 + 0.666667 NA intron (NM_133509, intron 7 of 10) MamGypsy2-I|LTR|Gypsy 115068 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 238.333-18 chr2 190652437 190652822 + 0.666667 NA intron (NM_005966, intron 2 of 9) intron (NM_005966, intron 2 of 9) 3546 NM_001321312 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 157.334-3 chr14 23803425 23803927 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR -150094 NM_001282988 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 136.667-114 chr9 88383291 88383684 + 0.666667 NA Intergenic MSTC|LTR|ERVL-MaLR -4957 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 128-55 chr2 180889189 180889480 + 0.666667 NA intron (NR_104324, intron 4 of 4) L1ME2|LINE|L1 -91051 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 263.167-11 chr4 29803045 29803596 + 0.666667 NA Intergenic Intergenic 589028 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 158.5-11 chr10 70580343 70580869 + 0.666667 NA Intergenic L1ME3G|LINE|L1 22135 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 186.167-21 chr18 42290238 42290864 + 0.666667 NA intron (NR_046457, intron 4 of 6) intron (NR_046457, intron 4 of 6) 103883 NR_046174 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 173.667-19 chr14 79669319 79669706 + 0.666667 NA intron (NM_004796, intron 14 of 16) intron (NM_004796, intron 14 of 16) 390132 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 218.333-20 chr2 116465132 116465636 + 0.666667 NA Intergenic MIRb|SINE|MIR 1121569 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 121.5-54 chr2 88529019 88529259 + 0.666667 NA exon (NM_152670, exon 4 of 4) exon (NM_152670, exon 4 of 4) 4490 NM_152670 200523 Hs.132104 NM_152670 ENSG00000172073 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 214.333-8 chr10 74087962 74088362 + 0.666667 NA intron (NM_014000, intron 8 of 21) intron (NM_014000, intron 8 of 21) 62666 NM_001320265 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 199.667-5 chr10 43815528 43815970 + 0.666667 NA Intergenic Intergenic -25332 NR_002726 10151 Hs.632956 NR_002726 HNRNPA3P1 D10S102|FBRNP|HNRPA3|HNRPA3P1 heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 pseudo 167.667-76 chr5 161499255 161499585 + 0.666667 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 48704 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 175-38 chr3 73193422 73193775 + 0.666667 NA Intergenic MSTB|LTR|ERVL-MaLR 131939 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 151.333-64 chr4 32088768 32089258 + 0.666667 NA intron (NR_125936, intron 1 of 2) MER52-int|LTR|ERV1 -66591 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 131-50 chr5 18646478 18646836 + 0.666667 NA Intergenic L1MA3|LINE|L1 839383 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 114.333-79 chr20 49511618 49511849 + 0.666667 NA intron (NM_000961, intron 8 of 9) intron (NM_000961, intron 8 of 9) -29065 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 235.667-12 chr2 144078647 144079207 + 0.666667 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 132652 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 138-40 chr16 13626437 13626817 + 0.666667 NA Intergenic L1MB1|LINE|L1 -293530 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 138-58 chr2 164712262 164712572 + 0.666667 NA intron (NM_001365670, intron 7 of 13) intron (NM_001365670, intron 7 of 13) -24640 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 155-3 chr1 74801810 74802060 + 0.666667 NA Intergenic Intergenic -68527 NM_001134759 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 194.667-47 chr4 46564800 46565126 + 0.666667 NA Intergenic Intergenic -174835 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 219.5-46 chr9 80293281 80293696 + 0.666667 NA Intergenic Intergenic 318465 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 130.5-63 chr5 56565425 56565756 + 0.666667 NA intron (NR_161255, intron 1 of 5) intron (NR_161255, intron 1 of 5) 40666 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 159.333-41 chr2 184005802 184006167 + 0.666667 NA Intergenic Intergenic -372991 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 161.5-35 chr5 5865732 5866047 + 0.666667 NA Intergenic MLT1C|LTR|ERVL-MaLR 443212 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 129.333-89 chr7 47674465 47674765 + 0.666667 NA Intergenic L2a|LINE|L2 19371 NM_001123065 401335 Hs.520816 NM_001123065 C7orf65 - chromosome 7 open reading frame 65 protein-coding 155.667-16 chr10 80516773 80517213 + 0.666667 NA intron (NM_030927, intron 8 of 8) intron (NM_030927, intron 8 of 8) 18949 NR_120661 101929574 Hs.593663 NR_120661 ENSG00000226659 LOC101929574 - uncharacterized LOC101929574 ncRNA 234.834-4 chr11 81920229 81920884 + 0.666667 NA intron (NR_120571, intron 6 of 7) intron (NR_120571, intron 6 of 7) -29720 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 157.167-31 chr2 21816970 21817246 + 0.666667 NA Intergenic MER33|DNA|hAT-Charlie -106456 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 163.167-24 chr2 131076156 131076541 + 0.666667 NA intron (NM_001321746, intron 2 of 6) intron (NM_001321746, intron 2 of 6) 16814 NM_001321748 130074 Hs.534679 NM_001009993 ENSG00000152102 FAM168B MANI family with sequence similarity 168 member B protein-coding 139.167-58 chr5 161955883 161956206 + 0.666667 NA intron (NR_126372, intron 1 of 2) HSMAR2|DNA|TcMar-Mariner 45152 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 231-28 chr8 31781802 31782449 + 0.666667 NA intron (NM_013962, intron 1 of 4) L2a|LINE|L2 142373 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 113.5-28 chr12 73939599 73939892 + 0.666667 NA Intergenic Intergenic 352886 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 207.834-9 chr6 122015799 122016319 + 0.666667 NA Intergenic MSTB1|LTR|ERVL-MaLR -383492 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 115.167-35 chr15 24632644 24633017 + 0.666667 NA Intergenic ERVL-B4-int|LTR|ERVL -42564 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 187.833-22 chr21 42038125 42038690 + 0.666667 NA Intergenic Intergenic 16138 NR_027273 150142 Hs.143833 NM_198078 ENSG00000237232 ZNF295-AS1 C21orf121|NCRNA00318|PRED87 ZNF295 antisense RNA 1 ncRNA 146.667-49 chr2 30954588 30955002 + 0.666667 NA intron (NM_024572, intron 6 of 14) intron (NM_024572, intron 6 of 14) -147349 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 123.5-30 chr14 87650733 87651069 + 0.666667 NA intron (NR_146551, intron 1 of 2) THE1D|LTR|ERVL-MaLR 4393 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 129.333-61 chr3 84738898 84739322 + 0.666667 NA intron (NR_033860, intron 11 of 20) intron (NR_033860, intron 11 of 20) 130465 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 158.667-23 chr12 119924530 119924911 + 0.666667 NA Intergenic Intergenic -47400 NM_007174 11113 Hs.119594 NM_007174 ENSG00000122966 CIT CITK|CRIK|MCPH17|STK21 citron rho-interacting serine/threonine kinase protein-coding 140.667-37 chr16 52696611 52696933 + 0.666667 NA Intergenic MER97a|DNA|hAT-Tip100 -89797 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 212.5-10 chr18 62215731 62216099 + 0.666667 NA intron (NR_144409, intron 2 of 31) intron (NR_144409, intron 2 of 31) 28660 NR_144404 57614 Hs.465323 NM_020854 ENSG00000134444 RELCH HsT3308|HsT885|KIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 139.333-7 chr10 49781122 49781353 + 0.666667 NA Intergenic Intergenic -18858 NM_001347823 55753 Hs.17860 NM_018245 ENSG00000197444 OGDHL - oxoglutarate dehydrogenase like protein-coding 128-37 chr17 61620700 61621039 + 0.666667 NA Intergenic L1MC|LINE|L1 -29650 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 174-33 chr21 25660329 25660727 + 0.666667 NA intron (NR_072999, intron 1 of 9) MER20B|DNA|hAT-Charlie 21246 NM_001270407 58494 Hs.517227 NM_021219 ENSG00000154721 JAM2 C21orf43|CD322|JAM-B|JAMB|PRO245|VE-JAM|VEJAM junctional adhesion molecule 2 protein-coding 131.667-10 chr10 30996313 30996654 + 0.666667 NA intron (NM_001143766, intron 1 of 7) L1M4b|LINE|L1 3034 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 120.333-9 chr1 114882446 114882694 + 0.666667 NA intron (NM_001282542, intron 12 of 30) L1MEg|LINE|L1 27707 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 168.667-80 chr8 85898776 85899239 + 0.666667 NA Intergenic Intergenic -71065 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 114.667-102 chr5 95692215 95692518 + 0.666667 NA intron (NM_001349303, intron 5 of 8) intron (NM_001349303, intron 5 of 8) -9356 NR_125328 83890 Hs.50499 NM_031952 ENSG00000145757 SPATA9 NYD-SP16 spermatogenesis associated 9 protein-coding 125.333-23 chr10 114871496 114871740 + 0.666667 NA intron (NM_001135051, intron 16 of 16) LTR50|LTR|ERVL 49838 NM_020940 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 157-12 chr10 55725740 55726028 + 0.666667 NA Intergenic Intergenic -97942 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 250.333-19 chr6 64788569 64789167 + 0.666667 NA intron (NM_001292009, intron 22 of 43) HAL1|LINE|L1 -512550 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 137.833-26 chr3 150455266 150455620 + 0.666667 NA intron (NR_130136, intron 3 of 4) intron (NR_130136, intron 3 of 4) 47145 NM_001303264 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 219.167-15 chr2 167280757 167281155 + 0.666667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 93584 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 289.333-9 chr4 46906557 46907404 + 0.666667 NA intron (NM_130902, intron 1 of 2) intron (NM_130902, intron 1 of 2) 2265 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 205.333-64 chrX 69685603 69686040 + 0.666667 NA intron (NM_001005613, intron 2 of 2) intron (NM_001005613, intron 2 of 2) 69708 NM_001005610 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 200.5-34 chr4 164816691 164817260 + 0.666667 NA Intergenic AluSz|SINE|Alu -60203 NM_001297550 100506013 Hs.105196 NM_001297550 ENSG00000248329 APELA ELA|Ende|tdl apelin receptor early endogenous ligand protein-coding 186.667-51 chr3 40967557 40967871 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -231791 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 161-64 chr6 110978504 110978913 + 0.666667 NA Intergenic L1MB7|LINE|L1 -3309 NM_001289111 84154 Hs.372265 NM_032194 ENSG00000197498 RPF2 BXDC1|bA397G5.4 ribosome production factor 2 homolog protein-coding 171-6 chr10 32395476 32395868 + 0.666667 NA Intergenic Intergenic -16903 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 150.333-5 chr1 119809197 119809639 + 0.666667 NA intron (NM_001159352, intron 1 of 6) intron (NM_001159352, intron 1 of 6) 2042 NM_032044 83998 Hs.660883 NM_032044 ENSG00000134193 REG4 GISP|REG-IV|RELP regenerating family member 4 protein-coding 136-75 chr7 13139550 13139820 + 0.666667 NA Intergenic MSTB2|LTR|ERVL-MaLR 452052 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 290.167-2 chr1 215616078 215616677 + 0.666667 NA intron (NM_001319294, intron 15 of 17) L1M5|LINE|L1 49073 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 182-56 chr9 32186280 32186780 + 0.666667 NA Intergenic MER47A|DNA|TcMar-Tigger -198073 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 169.167-19 chr17 65209158 65209666 + 0.666667 NA intron (NM_003835, intron 16 of 18) intron (NM_003835, intron 16 of 18) 72042 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 223.333-39 chr7 33401080 33401491 + 0.666667 NA intron (NM_001348037, intron 18 of 20) MamSINE1|SINE|tRNA-RTE 271721 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 246.5-14 chr22 31788756 31789205 + 0.666667 NA intron (NR_146296, intron 10 of 42) AluSz6|SINE|Alu 34957 NM_001369903 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 177.167-39 chr5 162763020 162763606 + 0.666667 NA Intergenic Intergenic -674258 NM_001364023 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 150.333-60 chr2 240264995 240265401 + 0.666667 NA Intergenic L1ME2|LINE|L1 -124540 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 115.667-53 chr2 100835635 100835965 + 0.666667 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 15661 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 211.833-12 chr2 49752850 49753375 + 0.666667 NA Intergenic AluJr|SINE|Alu 221091 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 226-25 chr7 3304537 3305036 + 0.666667 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 3534 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 191-3 chr1 235123036 235123606 + 0.666667 NA intron (NM_014765, intron 1 of 4) AluSg|SINE|Alu 4616 NR_002956 677802 Hs.744743 NR_002956 ENSG00000207181 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 179.833-34 chr9 32220195 32220575 + 0.666667 NA Intergenic Intergenic -164218 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 184-35 chr3 118538757 118539310 + 0.666667 NA intron (NR_135547, intron 3 of 3) L1MB7|LINE|L1 -102735 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 132.667-79 chr6 36457367 36457835 + 0.666667 NA intron (NR_104481, intron 1 of 3) AluJo|SINE|Alu 14601 NM_001286579 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 230.667-11 chr18 34105950 34106533 + 0.666667 NA intron (NM_001353232, intron 2 of 9) intron (NM_001353232, intron 2 of 9) -57629 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 175.167-11 chr11 44409018 44409414 + 0.666667 NA Intergenic Intergenic -99077 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 113.167-37 chr2 38687613 38687831 + 0.666667 NA intron (NM_138801, intron 3 of 6) AluSx1|SINE|Alu 21608 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 124.167-57 chr3 34860606 34861081 + 0.666667 NA Intergenic HAL1|LINE|L1 533180 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 131.5-57 chr4 97408554 97408776 + 0.666667 NA intron (NR_102713, intron 1 of 5) MER4B|LTR|ERV1 41739 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 115.333-64 chr21 18630630 18631003 + 0.666667 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 55348 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 116.333-91 chr6 44355425 44355792 + 0.666667 NA intron (NM_145026, intron 3 of 8) L1ME4a|LINE|L1 12948 NM_145026 221409 Hs.135283 NM_145026 ENSG00000249481 SPATS1 DDIP|SPATA8|SRSP1 spermatogenesis associated serine rich 1 protein-coding 160-46 chr2 209062182 209062588 + 0.666667 NA Intergenic Intergenic -361662 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 178.5-64 chr6 46413277 46413545 + 0.666667 NA intron (NM_001251973, intron 2 of 4) intron (NM_001251973, intron 2 of 4) 77912 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 259.667-7 chr14 70126729 70127551 + 0.666667 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -46923 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 168.333-17 chr14 65458344 65458778 + 0.666667 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) -12541 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 164.5-37 chr2 183548134 183548454 + 0.666667 NA Intergenic L1PA7|LINE|L1 423851 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 229-20 chr2 63701494 63701966 + 0.666667 NA Intergenic L1MA4|LINE|L1 112579 NM_001199111 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 163.5-53 chr4 101168041 101168357 + 0.666667 NA intron (NM_001130691, intron 2 of 12) L2a|LINE|L2 72673 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 142-8 chr1 197959551 197959851 + 0.666667 NA Intergenic Intergenic 42329 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 268.667-9 chr3 67067087 67067699 + 0.666667 NA Intergenic L1ME1|LINE|L1 69086 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 200.333-2 chr1 90039665 90040146 + 0.666667 NA Intergenic Intergenic 44795 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 206.5-2 chr1 72614722 72615240 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR -332442 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 145.167-68 chr7 38923182 38923455 + 0.666667 NA Intergenic Intergenic -14118 NM_080631 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 173-47 chr6 25538170 25538573 + 0.666667 NA intron (NM_001173977, intron 25 of 36) MIR3|SINE|MIR -113844 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 174-37 chr3 87806423 87806871 + 0.666667 NA intron (NM_001322208, intron 1 of 2) L1MA4|LINE|L1 13941 NM_001322209 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 131.167-18 chr12 34458597 34459071 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 436338 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 167.667-78 chr6 50738177 50738575 + 0.666667 NA intron (NM_172238, intron 5 of 7) L1M5|LINE|L1 24832 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 196-49 chr4 36971999 36972540 + 0.666667 NA Intergenic Intergenic -29510 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 155-2 chr1 73555179 73555493 + 0.666667 NA Intergenic L1MDa|LINE|L1 -119343 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 175-52 chr6 50885140 50885606 + 0.666667 NA Intergenic Intergenic 66502 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 118-54 chr2 78740492 78740965 + 0.666667 NA Intergenic Intergenic 195197 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 182.333-52 chr5 11831093 11831426 + 0.666667 NA intron (NM_001288717, intron 1 of 20) L1ME1|LINE|L1 73187 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 115.667-9 chr1 223664948 223665350 + 0.666667 NA intron (NM_001143962, intron 1 of 20) AluSx|SINE|Alu 552 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 223.667-9 chr16 22989373 22989785 + 0.666667 NA Intergenic Intergenic 159691 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 183-38 chr4 2999429 2999850 + 0.666667 NA intron (NM_001004056, intron 3 of 14) L1ME3Cz|LINE|L1 36068 NM_005307 2868 Hs.32959 NM_005307 ENSG00000125388 GRK4 GPRK2L|GPRK4|GRK4a|IT11 G protein-coupled receptor kinase 4 protein-coding 192-41 chr6 95527950 95528558 + 0.666667 NA Intergenic Intergenic 49197 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 162.167-47 chr6 139578365 139578867 + 0.666667 NA Intergenic Intergenic -104020 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 198-28 chr2 64197362 64197880 + 0.666667 NA intron (NR_033837, intron 3 of 5) intron (NR_033837, intron 3 of 5) 7864 NR_033837 150992 Hs.272318 NR_033837 ENSG00000230923 LINC00309 NCRNA00309 long intergenic non-protein coding RNA 309 ncRNA 178.5-43 chr2 69009713 69010237 + 0.666667 NA Intergenic Intergenic -3169 NM_032208 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 118.667-21 chr10 106307719 106307961 + 0.666667 NA Intergenic (AAAC)n|Simple_repeat|Simple_repeat 167675 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 195.667-30 chr4 120391035 120391491 + 0.666667 NA Intergenic Intergenic -324415 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 125.5-45 chr20 35721747 35722249 + 0.666667 NA intron (NR_040722, intron 9 of 17) intron (NR_040722, intron 9 of 17) 20262 NR_040723 9584 Hs.282901 NM_004902 ENSG00000131051 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 179.667-38 chr4 94238754 94239072 + 0.666667 NA intron (NM_001128429, intron 5 of 23) L2a|LINE|L2 -14396 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 136.5-57 chr2 210330206 210330638 + 0.666667 NA intron (NR_110606, intron 1 of 4) L1PA17|LINE|L1 5710 NR_110606 102724820 Hs.659232 NR_110604 LANCL1-AS1 LANCLOT LANCL1 antisense RNA 1 ncRNA 204.333-25 chr15 94146502 94146975 + 0.666667 NA Intergenic Intergenic -38800 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 129-52 chr3 16044761 16045023 + 0.666667 NA Intergenic (AG)n|Simple_repeat|Simple_repeat -129788 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 161.667-8 chr1 178385740 178386088 + 0.666667 NA intron (NM_004841, intron 1 of 15) L2a|LINE|L2 44463 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 165.167-62 chr9 10540456 10541020 + 0.666667 NA intron (NM_002839, intron 2 of 45) intron (NM_002839, intron 2 of 45) 72264 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 119.5-43 chr17 63206932 63207185 + 0.666667 NA intron (NM_025185, intron 6 of 25) L1ME3E|LINE|L1 233209 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 122.667-16 chr12 7356150 7356382 + 0.666667 NA intron (NM_001297650, intron 19 of 19) intron (NM_001297650, intron 19 of 19) 51934 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 164.167-56 chr6 100528983 100529362 + 0.666667 NA intron (NM_006828, intron 37 of 41) intron (NM_006828, intron 37 of 41) -65497 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 152.167-68 chr7 81165787 81166314 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -243661 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 130-40 chr15 77280636 77280902 + 0.666667 NA intron (NM_024776, intron 3 of 7) intron (NM_024776, intron 3 of 7) -55365 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 140.667-87 chr8 99328592 99328955 + 0.666667 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 207957 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 173.667-6 chr10 32627878 32628319 + 0.666667 NA intron (NM_001321115, intron 19 of 43) L1MA7|LINE|L1 181958 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 178.667-36 chr22 26561663 26562190 + 0.666667 NA intron (NM_001362923, intron 1 of 7) intron (NM_001362923, intron 1 of 7) 3415 NM_001008566 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 156-73 chr5 128471841 128472136 + 0.666667 NA intron (NM_001999, intron 5 of 64) MamRep1151|LTR?|LTR? 66257 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 261.667-17 chr16 8738969 8739432 + 0.666667 NA intron (NM_020686, intron 2 of 15) intron (NM_020686, intron 2 of 15) 18487 NM_001127448 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 164.167-40 chr2 207199753 207200279 + 0.666667 NA intron (NR_110283, intron 3 of 3) intron (NR_110283, intron 3 of 3) -32770 NM_001270943 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 172-12 chr12 13183218 13183767 + 0.666667 NA Intergenic MamRTE1|LINE|RTE-BovB -13234 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 132.167-39 chr20 11201642 11201972 + 0.666667 NA Intergenic L1MEd|LINE|L1 71576 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 197.333-12 chr14 27669220 27669634 + 0.666667 NA intron (NR_148992, intron 1 of 2) L1M4|LINE|L1 3794 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 149-7 chr1 70183070 70183392 + 0.666667 NA intron (NM_017768, intron 4 of 14) intron (NM_017768, intron 4 of 14) 22348 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 172.334-6 chr5 159725741 159726276 + 0.666667 NA Intergenic L2b|LINE|L2 145376 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 131.333-74 chr4 46423891 46424272 + 0.666667 NA Intergenic MLT1J2|LTR|ERVL-MaLR -33953 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 137.5-36 chr15 97442556 97442990 + 0.666667 NA intron (NR_120324, intron 2 of 4) HAL1b|LINE|L1 79038 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 163.667-61 chr5 42987582 42988102 + 0.666667 NA intron (NR_104643, intron 1 of 1) MER4-int|LTR|ERV1 5491 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 144.833-77 chr9 99406669 99407138 + 0.666667 NA Intergenic Intergenic -31646 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 189.5-4 chr1 209649103 209649526 + 0.666667 NA intron (NM_001017402, intron 2 of 21) intron (NM_001017402, intron 2 of 21) 2020 NM_001017402 3914 Hs.497636 NM_000228 ENSG00000196878 LAMB3 AI1A|BM600-125KDA|LAM5|LAMNB1 laminin subunit beta 3 protein-coding 186-59 chr8 140254516 140255025 + 0.666667 NA intron (NM_001160372, intron 15 of 22) MIRb|SINE|MIR -154235 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 189.667-27 chr2 145645917 145646442 + 0.666667 NA Intergenic MLT2B2|LTR|ERVL -940878 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 122.667-29 chr15 59721939 59722294 + 0.666667 NA Intergenic Intergenic -32796 NM_001368057 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 261-9 chr17 76778744 76779137 + 0.666667 NA TTS (NM_001353018) TTS (NM_001353018) -20104 NR_110837 101928514 Hs.617206 NR_110837 ENSG00000267065 LINC02080 - long intergenic non-protein coding RNA 2080 ncRNA 149.667-39 chr2 66540775 66541221 + 0.666667 NA intron (NM_002398, intron 8 of 12) intron (NM_002398, intron 8 of 12) -33032 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 131.167-2 chr1 39818939 39819269 + 0.666667 NA Intergenic Intergenic 30128 NR_135805 101929536 Hs.552820 NR_135805 ENSG00000261798 LOC101929536 - uncharacterized LOC101929536 ncRNA 128-76 chr5 128127541 128127834 + 0.666667 NA intron (NM_001046, intron 4 of 26) L1M5|LINE|L1 43921 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 148.667-76 chr8 74343830 74344219 + 0.666667 NA Intergenic Intergenic -6359 NM_001040875 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 142.5-30 chr17 58127550 58128066 + 0.666667 NA Intergenic L1P4|LINE|L1 -27346 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 208.667-10 chr12 49080859 49081245 + 0.666667 NA Intergenic AluSp|SINE|Alu -11073 NM_144593 121268 Hs.159013 NM_144593 ENSG00000167550 RHEBL1 RHEBL1c RHEB like 1 protein-coding 223.667-16 chr2 133682106 133682486 + 0.666667 NA Intergenic MIRb|SINE|MIR -113833 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 137.5-25 chr12 100403707 100404047 + 0.666667 NA intron (NM_139319, intron 8 of 11) intron (NM_139319, intron 8 of 11) 46803 NM_139319 246213 Hs.116871 NM_139319 ENSG00000179520 SLC17A8 DFNA25|VGLUT3 solute carrier family 17 member 8 protein-coding 121.833-5 chr1 192518105 192518289 + 0.666667 NA Intergenic AluSx4|SINE|Alu -57576 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 145.333-84 chr7 117971504 117971802 + 0.666667 NA Intergenic L1MEd|LINE|L1 -98212 NM_001363351 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 125.667-62 chr2 129276478 129276819 + 0.666667 NA Intergenic MIR|SINE|MIR -2757 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 146.333-26 chr13 31220135 31220439 + 0.666667 NA intron (NM_194318, intron 2 of 14) intron (NM_194318, intron 2 of 14) 20312 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 147.833-54 chr5 58405119 58405405 + 0.666667 NA Intergenic Intergenic 54824 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 200.834-7 chr8 114114740 114115434 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR -678148 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 227-25 chr8 119696440 119697082 + 0.666667 NA Intergenic AluSz6|SINE|Alu -23371 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 165.5-64 chr9 20632651 20632998 + 0.666667 NA Intergenic Intergenic -10325 NM_004529 4300 Hs.317248 NM_004529 ENSG00000171843 MLLT3 AF9|YEATS3 MLLT3 super elongation complex subunit protein-coding 192.167-47 chr9 86686985 86687591 + 0.666667 NA Intergenic Intergenic 260218 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 156.667-34 chr14 82445568 82446017 + 0.666667 NA Intergenic Intergenic -196840 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 209.167-19 chr2 76879588 76880253 + 0.666667 NA intron (NR_146416, intron 1 of 1) Tigger1|DNA|TcMar-Tigger -106045 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 235-33 chr8 55742185 55742624 + 0.666667 NA intron (NM_152417, intron 5 of 5) intron (NM_152417, intron 5 of 5) 30974 NM_001286661 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 130-101 chr8 144987374 144987856 + 0.666667 NA intron (NR_023392, intron 4 of 4) L1PA8|LINE|L1 -7250 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 114.667-97 chr4 172399972 172400296 + 0.666667 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 288783 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 168.667-40 chr2 181715211 181715537 + 0.666667 NA Intergenic Intergenic -34709 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 177.167-45 chr8 54596135 54596400 + 0.666667 NA Intergenic Intergenic -19829 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 177-43 chr22 46132941 46133450 + 0.666667 NA Intergenic Intergenic -17331 NM_001362872 5465 Hs.103110 NM_005036 ENSG00000186951 PPARA NR1C1|PPAR|PPARalpha|hPPAR peroxisome proliferator activated receptor alpha protein-coding 186.833-21 chr19 3218390 3218789 + 0.666667 NA Intergenic Intergenic -6072 NM_001172673 60680 Hs.655747 NM_021938 ENSG00000161082 CELF5 BRUNOL-5|BRUNOL5|CELF-5 CUGBP Elav-like family member 5 protein-coding 131.167-80 chr8 72380842 72381322 + 0.666667 NA Intergenic Intergenic -129448 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 128.333-124 chr9 110258308 110258578 + 0.666667 NA Intergenic MIR|SINE|MIR -1936 NM_003329 7295 Hs.435136 NM_003329 ENSG00000136810 TXN TRDX|TRX|TRX1 thioredoxin protein-coding 320.667-10 chr5 14866991 14867781 + 0.666667 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 4392 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 231.834-7 chr22 34978410 34979107 + 0.666667 NA intron (NR_138042, intron 1 of 4) L2b|LINE|L2 19158 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 203.5-27 chr3 26578316 26578955 + 0.666667 NA Intergenic Intergenic -44171 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 126.833-38 chr2 143767236 143767468 + 0.666667 NA intron (NM_018460, intron 13 of 13) intron (NM_018460, intron 13 of 13) -169715 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 177.5-3 chr1 51770484 51770813 + 0.666667 NA intron (NM_148906, intron 11 of 22) intron (NM_148906, intron 11 of 22) 40798 NM_001350210 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 125.667-52 chr2 22656130 22656422 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger 119797 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 124-37 chr15 53006863 53007170 + 0.666667 NA Intergenic Intergenic -109349 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 122.333-74 chr3 152886366 152886550 + 0.666667 NA Intergenic Intergenic 51327 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 176.167-43 chr7 110233427 110233814 + 0.666667 NA Intergenic Intergenic -273407 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 253.833-17 chr8 121023431 121023946 + 0.666667 NA Intergenic Intergenic -211642 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 122.667-99 chr8 129143918 129144150 + 0.666667 NA Intergenic L3|LINE|CR1 97206 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 177-47 chr3 188891195 188891624 + 0.666667 NA TTS (NM_001167671) TTS (NM_001167671) 56230 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 128-2 chr1 35727664 35728025 + 0.666667 NA intron (NM_001330490, intron 24 of 24) intron (NM_001330490, intron 24 of 24) -8960 NM_152374 127703 Hs.112023 NM_152374 ENSG00000142686 C1orf216 - chromosome 1 open reading frame 216 protein-coding 343.833-5 chr2 46592427 46593303 + 0.666667 NA intron (NM_173074, intron 4 of 6) L1ME4b|LINE|L1 -12627 NR_104182 100506142 Hs.658541 NR_104182 ENSG00000250116 LOC100506142 - uncharacterized LOC100506142 ncRNA 148.667-86 chr9 125235376 125235791 + 0.666667 NA 3' UTR (NM_005347, exon 8 of 8) 3' UTR (NM_005347, exon 8 of 8) 5760 NM_005347 3309 Hs.743241 NM_005347 ENSG00000044574 HSPA5 BIP|GRP78|HEL-S-89n|MIF2 heat shock protein family A (Hsp70) member 5 protein-coding 196.167-11 chr13 75352606 75352972 + 0.666667 NA intron (NM_001286658, intron 4 of 19) intron (NM_001286658, intron 4 of 19) 112201 NR_132375 106144536 Hs.591226 NR_132375 LINC01078 - long intergenic non-protein coding RNA 1078 ncRNA 167.333-42 chr22 44897832 44898158 + 0.666667 NA intron (NR_134535, intron 5 of 11) AluJr|SINE|Alu 105624 NR_147506 101927551 Hs.683911 NR_147506 ENSG00000230922 LOC101927551 - uncharacterized LOC101927551 ncRNA 123.833-16 chr12 57154162 57154359 + 0.666667 NA exon (NM_002332, exon 7 of 89) exon (NM_002332, exon 7 of 89) -6641 NR_131939 105751187 Hs.609540 NR_131938 ENSG00000259125 LRP1-AS - LRP1 antisense RNA ncRNA 116-33 chr16 3833155 3833355 + 0.666667 NA intron (NM_004380, intron 2 of 30) AluSx|SINE|Alu 46865 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 170.5-16 chr13 88920753 88921251 + 0.666667 NA Intergenic Intergenic 294149 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 199.667-16 chr13 59783007 59783445 + 0.666667 NA intron (NM_001258369, intron 25 of 26) L2|LINE|L2 -229492 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 304.667-14 chr5 75827096 75827652 + 0.666667 NA Intergenic L1ME3C|LINE|L1 -109937 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 224-37 chr8 32903919 32904383 + 0.666667 NA Intergenic MamTip3|DNA|hAT-Tip100 182316 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 125.833-35 chr19 33603125 33603435 + 0.666667 NA Intergenic Intergenic -18673 NM_001127896 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 122.333-3 chr1 53577807 53578123 + 0.666667 NA intron (NM_147193, intron 3 of 9) intron (NM_147193, intron 3 of 9) 118566 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 142.667-9 chr10 31973637 31974152 + 0.666667 NA Intergenic FRAM|SINE|Alu -45018 NM_001270695 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 161-78 chr8 90130483 90130871 + 0.666667 NA Intergenic L2c|LINE|L2 -47798 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 122.833-45 chr2 96432194 96432446 + 0.666667 NA Intergenic MER31-int|LTR|ERV1 73037 NM_001285486 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 113.667-101 chr5 51426826 51427062 + 0.666667 NA Intergenic Intergenic 43496 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 133.167-18 chr13 28685026 28685225 + 0.666667 NA Intergenic MER52A|LTR|ERV1 25995 NM_015932 51371 Hs.268742 NM_015932 ENSG00000132963 POMP C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1 proteasome maturation protein protein-coding 132.333-23 chr12 9942128 9942388 + 0.666667 NA intron (NR_104634, intron 2 of 4) L2c|LINE|L2 1237 NR_104634 100506159 Hs.282397 NR_104634 ENSG00000225231 LINC02470 - long intergenic non-protein coding RNA 2470 ncRNA 160.167-51 chr4 131539761 131540068 + 0.666667 NA Intergenic GA-rich|Low_complexity|Low_complexity -224924 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 126.333-20 chr12 49662672 49662954 + 0.666667 NA intron (NM_001367835, intron 4 of 26) intron (NM_001367835, intron 4 of 26) 32269 NM_001363607 25766 Hs.706827 NM_012272 ENSG00000110844 PRPF40B HYPC pre-mRNA processing factor 40 homolog B protein-coding 193.167-22 chr2 111898708 111899181 + 0.666667 NA intron (NM_006343, intron 1 of 18) CpG 337 NM_006343 10461 Hs.306178 NM_006343 ENSG00000153208 MERTK MER|RP38|Tyro12|c-Eyk|c-mer MER proto-oncogene, tyrosine kinase protein-coding 210.167-7 chr10 69015017 69015605 + 0.666667 NA intron (NM_015634, intron 6 of 6) intron (NM_015634, intron 6 of 6) 26508 NM_015634 26128 Hs.279580 NM_015634 ENSG00000198954 KIF1BP KBP|KIAA1279|TTC20 KIF1 binding protein protein-coding 155.333-102 chr9 97911319 97911588 + 0.666667 NA intron (NM_016481, intron 3 of 4) MLT1E1A|LTR|ERVL-MaLR 11117 NM_001330725 51531 Hs.9196 NM_016481 ENSG00000136932 TRMO C9orf156|HSPC219|NAP1 tRNA methyltransferase O protein-coding 128-58 chr20 32395776 32396294 + 0.666667 NA intron (NM_015338, intron 3 of 11) AluSx|SINE|Alu 36970 NM_001363734 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 194-10 chr11 116292458 116292864 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR -346761 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 148.667-29 chr18 63215179 63215554 + 0.666667 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 104014 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 212.333-32 chr6 91432604 91433154 + 0.666667 NA Intergenic AluSx1|SINE|Alu -88781 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 198.667-43 chr4 144334956 144335353 + 0.666667 NA Intergenic Intergenic -194436 NM_002099 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 199.167-2 chr10 37327405 37327940 + 0.666667 NA intron (NR_104061, intron 3 of 4) L1PB2|LINE|L1 18486 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 276.666-6 chr6 152306349 152307099 + 0.666667 NA intron (NM_182961, intron 91 of 145) AluJb|SINE|Alu -73806 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 227.667-17 chr3 87532555 87533272 + 0.666667 NA Intergenic Intergenic -256329 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 169-27 chr2 136807721 136808106 + 0.666667 NA intron (NM_001316349, intron 1 of 27) L1MC3|LINE|L1 42368 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 127.833-80 chr9 76907718 76907939 + 0.666667 NA Intergenic L2b|LINE|L2 -1714 NM_015225 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 159.167-38 chr3 38418744 38419107 + 0.666667 NA intron (NR_146068, intron 15 of 16) intron (NR_146068, intron 15 of 16) -34965 NM_001106 93 Hs.174273 NM_001106 ENSG00000114739 ACVR2B ACTRIIB|ActR-IIB|HTX4 activin A receptor type 2B protein-coding 129-46 chr2 193064441 193064678 + 0.666667 NA Intergenic L1MA4A|LINE|L1 314714 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 184.834-8 chrX 97374354 97374984 + 0.666667 NA intron (NM_007309, intron 24 of 26) intron (NM_007309, intron 24 of 26) 189866 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 123.833-8 chr10 61620246 61620444 + 0.666667 NA Intergenic AluSz|SINE|Alu -42584 NM_001366905 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 184-8 chr10 65483679 65484223 + 0.666667 NA Intergenic AluSx1|SINE|Alu -87474 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 113.5-67 chr4 30523053 30523406 + 0.666667 NA Intergenic L1MEd|LINE|L1 -197140 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 114-94 chr7 83466121 83466440 + 0.666667 NA intron (NM_001178129, intron 4 of 16) intron (NM_001178129, intron 4 of 16) 175151 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 180.667-5 chr1 222932401 222932792 + 0.666667 NA intron (NM_001369594, intron 1 of 7) intron (NM_001369594, intron 1 of 7) 4172 NM_001369594 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 209.667-24 chr2 171657794 171658211 + 0.666667 NA Intergenic L1ME3D|LINE|L1 -29467 NM_001271790 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 211.333-41 chr5 147030736 147031338 + 0.666667 NA intron (NM_001271900, intron 2 of 10) AluY|SINE|Alu 25100 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 121-48 chr2 99570600 99570957 + 0.666667 NA intron (NM_001025108, intron 17 of 23) intron (NM_001025108, intron 17 of 23) -80761 NM_001321454 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 164.333-88 chr9 38662517 38662833 + 0.666667 NA Intergenic Intergenic 41587 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 166-25 chr14 81502435 81502797 + 0.666667 NA intron (NM_005065, intron 6 of 20) intron (NM_005065, intron 6 of 20) 31237 NM_005065 6400 Hs.181300 NM_005065 ENSG00000071537 SEL1L Hrd3|PRO1063|SEL1-LIKE|SEL1L1 SEL1L adaptor subunit of ERAD E3 ubiquitin ligase protein-coding 230.333-17 chr22 47223746 47224233 + 0.666667 NA Intergenic Intergenic -121582 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 134.333-8 chr1 225151618 225151883 + 0.666667 NA intron (NM_001367479, intron 31 of 85) intron (NM_001367479, intron 31 of 85) 222075 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 148-39 chr19 32880376 32880752 + 0.666667 NA intron (NM_032816, intron 18 of 18) AluJo|SINE|Alu -10797 NM_001126335 11136 Hs.743345 NM_014270 ENSG00000021488 SLC7A9 BAT1|CSNU3 solute carrier family 7 member 9 protein-coding 173.667-9 chr11 85721268 85721930 + 0.666667 NA intron (NM_001365826, intron 8 of 18) intron (NM_001365826, intron 8 of 18) -2249 NM_001289609 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 172.333-40 chr2 143599511 143599822 + 0.666667 NA intron (NM_018460, intron 11 of 13) intron (NM_018460, intron 11 of 13) -337401 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 126.167-94 chr9 16043687 16044037 + 0.666667 NA Intergenic Intergenic 209245 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 127.167-47 chr2 54375040 54375287 + 0.666667 NA Intergenic L1M2|LINE|L1 44279 NM_001369401 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 114.667-57 chr2 172488515 172488842 + 0.666667 NA intron (NM_001365530, intron 19 of 25) intron (NM_001365530, intron 19 of 25) -22656 NR_157573 101929947 Hs.710861 NR_157573 ITGA6-AS1 - ITGA6 antisense RNA 1 ncRNA 131.5-25 chr14 55156757 55157179 + 0.666667 NA intron (NM_001146015, intron 14 of 19) HAL1|LINE|L1 19985 NR_003225 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 118.667-68 chr2 226342275 226342615 + 0.666667 NA Intergenic L1MC|LINE|L1 199651 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 116.667-89 chr5 108100414 108100610 + 0.666667 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 281586 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 124.167-85 chr7 92502591 92503119 + 0.666667 NA intron (NM_001282677, intron 12 of 22) intron (NM_001282677, intron 12 of 22) -24909 NM_001130925 30816 NM_014590 ENSG00000242950 ERVW-1 ENV|ENVW|ERVWE1|HERV-7q|HERV-W-ENV|HERV7Q|HERVW|HERVWENV endogenous retrovirus group W member 1, envelope protein-coding 194-24 chr16 64889445 64889804 + 0.666667 NA Intergenic Intergenic 232439 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 180.167-7 chr10 118688455 118689088 + 0.666667 NA intron (NM_153810, intron 7 of 8) intron (NM_153810, intron 7 of 8) 66199 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 205.5-5 chr13 24907334 24907739 + 0.666667 NA intron (NR_047594, intron 5 of 17) intron (NR_047594, intron 5 of 17) 15325 NR_047595 55835 Hs.513379 NM_018451 ENSG00000151849 CENPJ BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4 centromere protein J protein-coding 146.5-36 chr17 33010532 33010801 + 0.666667 NA Intergenic Intergenic 17815 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 118.667-22 chr11 28898419 28898742 + 0.666667 NA Intergenic Intergenic -421032 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 252-23 chrX 87771774 87772242 + 0.666667 NA Intergenic L1MA9|LINE|L1 254206 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 116.333-32 chr12 55218283 55218715 + 0.666667 NA Intergenic Intergenic -2526 NM_001005280 121364 Hs.554557 NM_001005280 ENSG00000179919 OR10A7 OR12-6 olfactory receptor family 10 subfamily A member 7 protein-coding 170.667-62 chr6 17159427 17159907 + 0.666667 NA Intergenic Intergenic 57409 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 119.667-38 chr19 42660791 42661055 + 0.666667 NA Intergenic Intergenic -65999 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 117.333-80 chr4 48277406 48277744 + 0.666667 NA Intergenic L1MD1|LINE|L1 -7737 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 143.667-52 chr18 64920767 64921063 + 0.666667 NA Intergenic Intergenic -660860 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 287.5-14 chr5 157008218 157009069 + 0.666667 NA Intergenic MSTB-int|LTR|ERVL-MaLR -45417 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 117.833-82 chr8 78718134 78718419 + 0.666667 NA non-coding (NR_156423, exon 11 of 11) non-coding (NR_156423, exon 11 of 11) 6098 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 124.667-77 chr3 112850261 112850478 + 0.666667 NA Intergenic L1PREC2|LINE|L1 -4419 NM_001370552 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 163 chr1 45434229 45434682 + 0.666667 NA intron (NM_001320800, intron 1 of 9) AluJr|SINE|Alu 56708 NM_001320800 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 142-69 chr4 62696111 62696506 + 0.666667 NA Intergenic Intergenic -534543 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 119-62 chr22 26687381 26687708 + 0.666667 NA intron (NR_110543, intron 1 of 5) MLT1O|LTR|ERVL-MaLR 14701 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 120-47 chr19 33949248 33949608 + 0.666667 NA Intergenic Intergenic 152558 NM_001129994 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 132.667-43 chr18 3460529 3460889 + 0.666667 NA TTS (NM_170695) TTS (NM_170695) -5541 NR_110428 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 113.333-63 chr20 58956559 58956853 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -24550 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 294.833-6 chr8 119063792 119064482 + 0.666667 NA intron (NR_134297, intron 1 of 1) intron (NR_134297, intron 1 of 1) -3110 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 137.667-66 chr3 23172339 23172745 + 0.666667 NA Intergenic AluSx|SINE|Alu 30036 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 142.667-14 chr11 36249068 36249438 + 0.666667 NA Intergenic Intergenic 40171 NM_001101653 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 201.333-13 chr13 62084096 62084500 + 0.666667 NA Intergenic L2a|LINE|L2 -54750 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 153.333-58 chr3 187027506 187027869 + 0.666667 NA intron (NM_003032, intron 1 of 6) intron (NM_003032, intron 1 of 6) 5832 NM_003032 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 168.5-11 chr11 78804186 78804485 + 0.666667 NA intron (NM_001098816, intron 15 of 33) L2a|LINE|L2 -229471 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 243.334-9 chrX 141462244 141462930 + 0.666667 NA Intergenic MSTA|LTR|ERVL-MaLR -40262 NR_037183 619455 Hs.590784 NR_037183 ENSG00000277215 SPANXA2-OT1 CXorf18 SPANXA2 overlapping transcript 1 ncRNA 196.667-15 chr14 44917066 44917718 + 0.666667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -5475 NR_110050 101927418 Hs.144809 NR_110050 ENSG00000258949 LOC101927418 - uncharacterized LOC101927418 ncRNA 159.833-54 chr8 134132406 134132645 + 0.666667 NA Intergenic Intergenic 246029 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 153-22 chr16 26852099 26852542 + 0.666667 NA Intergenic L1ME4b|LINE|L1 -214607 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 218.833-12 chr17 14699436 14700211 + 0.666667 NA Intergenic Intergenic -314982 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 160.667-84 chrX 93343218 93343649 + 0.666667 NA Intergenic L1MA2|LINE|L1 330145 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 185.333-29 chr2 54738331 54738830 + 0.666667 NA intron (NM_001039753, intron 1 of 40) L1ME3A|LINE|L1 13568 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 186.667-82 chr9 115764021 115764471 + 0.666667 NA Intergenic Intergenic -20007 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 114.333-75 chr2 213612270 213612475 + 0.666667 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -145695 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 122.333-57 chr2 202723144 202723462 + 0.666667 NA intron (NM_173511, intron 2 of 7) intron (NM_173511, intron 2 of 7) 88334 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 162.833-51 chr8 82541828 82542242 + 0.666667 NA Intergenic Intergenic -370069 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 228-11 chr14 61034351 61034746 + 0.666667 NA intron (NR_033344, intron 6 of 16) intron (NR_033344, intron 6 of 16) -52858 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 125-59 chr4 31122130 31122499 + 0.666667 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -48830 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 161.167-3 chr1 114923769 114924066 + 0.666667 NA intron (NM_001282542, intron 21 of 30) intron (NM_001282542, intron 21 of 30) 69054 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 123.667-15 chr10 79217368 79217673 + 0.666667 NA intron (NM_020338, intron 7 of 24) intron (NM_020338, intron 7 of 24) -129949 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 166.833-8 chr10 89881085 89881553 + 0.666667 NA intron (NR_149080, intron 1 of 1) L1MA3|LINE|L1 -6815 NR_149079 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 121.333-89 chr5 166001431 166001811 + 0.666667 NA Intergenic Intergenic 924749 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 142.167-30 chr17 64451810 64452141 + 0.666667 NA intron (NM_001291317, intron 2 of 8) MamRep488|DNA|hAT-Tip100 2860 NM_001085423 284021 Hs.631749 NM_001085423 ENSG00000271605 MILR1 Allergin-1|C17orf60|MCA-32|MCA32 mast cell immunoglobulin like receptor 1 protein-coding 146.833-12 chr12 33313459 33313772 + 0.666667 NA Intergenic MER39|LTR|ERV1 126204 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 142.333-56 chr2 130876318 130876576 + 0.666667 NA intron (NM_001367493, intron 1 of 13) AluYm1|SINE|Alu 39533 NM_001367493 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 173.667-49 chr4 139167187 139167527 + 0.666667 NA intron (NM_001371339, intron 1 of 9) MER65-int|LTR|ERV1 9861 NM_001371338 185.667-22 chr15 95551757 95552269 + 0.666667 NA Intergenic Intergenic 118920 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 139.334 chr1 114700214 114700719 + 0.666667 NA Intergenic Intergenic -4848 NM_000036 270 Hs.89570 NM_000036 ENSG00000116748 AMPD1 MAD|MADA|MMDD adenosine monophosphate deaminase 1 protein-coding 195-48 chr8 132245862 132246287 + 0.666667 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -140809 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 164.667-14 chr11 96642398 96642820 + 0.666667 NA Intergenic Intergenic 134184 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 298.5-10 chr2 105057812 105058616 + 0.666667 NA intron (NM_182640, intron 2 of 10) intron (NM_182640, intron 2 of 10) -19718 NR_110603 102724691 Hs.606390 NR_110603 ENSG00000224509 LOC102724691 - uncharacterized LOC102724691 ncRNA 139-8 chr12 70310369 70310637 + 0.666667 NA intron (NR_037615, intron 3 of 16) Kanga2_a|DNA|TcMar-Tc2 -55787 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 180.333-39 chr22 38094179 38094584 + 0.666667 NA intron (NM_025045, intron 7 of 13) AluSq|SINE|Alu -11218 NM_013356 23539 Hs.745256 NM_013356 ENSG00000100156 SLC16A8 MCT3|REMP solute carrier family 16 member 8 protein-coding 126.667-34 chr19 35945475 35945839 + 0.666667 NA 3' UTR (NM_024509, exon 3 of 3) 3' UTR (NM_024509, exon 3 of 3) -1458 NR_136525 105372383 Hs.641592 NR_136525 LOC105372383 - uncharacterized LOC105372383 ncRNA 159-13 chr10 92068275 92068561 + 0.666667 NA intron (NM_001178137, intron 9 of 9) intron (NM_001178137, intron 9 of 9) 144648 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 176-2 chr1 66214118 66214502 + 0.666667 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -117798 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 131-21 chr14 82783716 82784048 + 0.666667 NA Intergenic Intergenic 141250 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 127.5 chr1 10838000 10838324 + 0.666667 NA Intergenic Intergenic -41516 NM_001079843 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 149-76 chr9 76736977 76737516 + 0.666667 NA intron (NM_001308048, intron 6 of 17) intron (NM_001308048, intron 6 of 17) -27190 NR_132312 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 155.333-48 chr2 47395810 47396207 + 0.666667 NA Intergenic AluSx|SINE|Alu -7059 NM_000251 4436 Hs.597656 NM_000251 ENSG00000095002 MSH2 COCA1|FCC1|HNPCC|HNPCC1|LCFS2|hMSH2 mutS homolog 2 protein-coding 141.333-35 chr15 39836721 39836982 + 0.666667 NA intron (NM_001271854, intron 1 of 3) L2a|LINE|L2 -7575 NM_001271855 11245 Hs.37196 NM_007223 ENSG00000166073 GPR176 HB-954 G protein-coupled receptor 176 protein-coding 200.333-8 chr12 67222679 67223004 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -46517 NM_001329675 55832 Hs.546407 NM_018448 ENSG00000111530 CAND1 TIP120|TIP120A cullin associated and neddylation dissociated 1 protein-coding 206.667-32 chr3 112496597 112497130 + 0.666667 NA intron (NM_001085357, intron 1 of 3) AluSx1|SINE|Alu 2609 NM_181780 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 246.167-13 chr2 29477125 29477518 + 0.666667 NA intron (NM_004304, intron 4 of 28) MIRb|SINE|MIR -1944 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 137-48 chr19 31712904 31713293 + 0.666667 NA Intergenic Intergenic 120817 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 134.833-14 chr13 104273647 104274002 + 0.666667 NA Intergenic Intergenic 848624 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 162.333-32 chr2 101761183 101761529 + 0.666667 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 63649 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 127-96 chr8 95340380 95340583 + 0.666667 NA intron (NR_038208, intron 2 of 3) intron (NR_038208, intron 2 of 3) -71280 NM_001363260 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 148-71 chr6 54959824 54960110 + 0.666667 NA Intergenic Intergenic 113196 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 144.667-86 chr6 125720457 125720811 + 0.666667 NA TTS (NR_038906) TTS (NR_038906) -28998 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 182.333-74 chr8 80325767 80326206 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 84597 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 255.167-10 chr9 96405568 96406114 + 0.666667 NA intron (NM_153695, intron 1 of 4) L1MB5|LINE|L1 12529 NM_153695 195828 Hs.494557 NM_153695 ENSG00000165244 ZNF367 AFF29|CDC14B|ZFF29 zinc finger protein 367 protein-coding 132.167-56 chr5 55871733 55872201 + 0.666667 NA intron (NM_001242636, intron 3 of 14) intron (NM_001242636, intron 3 of 14) 18645 NM_001242639 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 182.333-68 chr8 24195141 24195784 + 0.666667 NA Intergenic Intergenic -98578 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 244.5-5 chr12 80302600 80303083 + 0.666667 NA intron (NM_001368062, intron 32 of 62) intron (NM_001368062, intron 32 of 62) 93388 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 124.667-76 chr3 95896211 95896487 + 0.666667 NA Intergenic Intergenic -213156 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 187-26 chr22 25955847 25956156 + 0.666667 NA intron (NM_001318245, intron 39 of 43) MIRb|SINE|MIR -213461 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 178.167-7 chr10 91790836 91791205 + 0.666667 NA intron (NR_108071, intron 1 of 1) L1MA3|LINE|L1 7176 NR_108070 100507633 Hs.291528 NR_108070 ENSG00000228701 TNKS2-AS1 - TNKS2 antisense RNA 1 (head to head) ncRNA 120.167-2 chr1 166285180 166285597 + 0.666667 NA Intergenic MLT1L|LTR|ERVL-MaLR -118633 NR_135199 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 153.667-11 chr10 113574141 113574438 + 0.666667 NA exon (NM_004132, exon 3 of 13) exon (NM_004132, exon 3 of 13) 21236 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 132.167-19 chr14 67723748 67724074 + 0.666667 NA intron (NM_152443, intron 3 of 8) intron (NM_152443, intron 3 of 8) 22025 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 120.5-2 chr1 105248240 105248420 + 0.666667 NA Intergenic L1MA2|LINE|L1 370605 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 124.333-43 chr2 32048680 32048964 + 0.666667 NA Intergenic AluSx|SINE|Alu -8987 NR_135585 84661 Hs.531788 NM_032574 ENSG00000162961 DPY30 Cps25|HDPY-30|Saf19 dpy-30 histone methyltransferase complex regulatory subunit protein-coding 197-13 chr13 92860857 92861176 + 0.666667 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -139402 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 151.833-7 chr10 63720868 63721345 + 0.666667 NA Intergenic Intergenic -199216 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 135-62 chr3 148213640 148213944 + 0.666667 NA Intergenic MER57A-int|LTR|ERV1 -67099 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 114-85 chr6 47491649 47491961 + 0.666667 NA intron (NM_012120, intron 1 of 17) intron (NM_012120, intron 1 of 17) 14016 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 157.5-15 chr13 112029526 112029779 + 0.666667 NA intron (NR_120392, intron 1 of 3) MIR3|SINE|MIR -37497 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 138.667-62 chr3 193805402 193805732 + 0.666667 NA Intergenic Intergenic 38442 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 192.5-16 chr15 86901569 86901940 + 0.666667 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -31126 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 135.333-69 chr6 69650838 69651176 + 0.666667 NA Intergenic Intergenic 145459 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 162.333-17 chr12 131606115 131606379 + 0.666667 NA Intergenic LTR8|LTR|ERV1 41874 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 160.833-30 chr3 9386469 9386816 + 0.666667 NA 3' UTR (NM_015453, exon 10 of 10) 3' UTR (NM_015453, exon 10 of 10) 9981 NR_132781 440944 Hs.598958 NM_001013713 ENSG00000206573 THUMPD3-AS1 SETD5-AS1 THUMPD3 antisense RNA 1 ncRNA 167.167-52 chr6 54180598 54180945 + 0.666667 NA intron (NM_001281746, intron 9 of 11) L1MA2|LINE|L1 69328 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 117.5-35 chr21 25746639 25746922 + 0.666667 NA intron (NM_001197297, intron 3 of 9) intron (NM_001197297, intron 3 of 9) -11126 NM_001003697 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 198.333-32 chr3 194865760 194866167 + 0.666667 NA Intergenic L1ME3A|LINE|L1 -97254 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 260-4 chr1 216124224 216124917 + 0.666667 NA intron (NM_206933, intron 21 of 71) intron (NM_206933, intron 21 of 71) 52105 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 114.667-81 chr3 99460398 99460609 + 0.666667 NA Intergenic L1MEi|LINE|L1 -178091 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 117.667-30 chr11 101552488 101552778 + 0.666667 NA intron (NM_004621, intron 1 of 12) intron (NM_004621, intron 1 of 12) 31374 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 226.167-18 chr3 66726486 66726825 + 0.666667 NA Intergenic AluSp|SINE|Alu 11681 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 159.667-37 chr15 25457352 25457695 + 0.666667 NA Intergenic L1MEh|LINE|L1 -18467 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 166.667-3 chr1 97395158 97395721 + 0.666667 NA intron (NM_000110, intron 14 of 22) MIRc|SINE|MIR 299516 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 197.833-7 chr11 103729350 103729726 + 0.666667 NA Intergenic Intergenic -120368 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 309-9 chr4 104029574 104030132 + 0.666667 NA Intergenic Intergenic -309868 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 213.5-17 chr2 71861644 71862283 + 0.666667 NA Intergenic Intergenic 285899 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 137.333-77 chr5 88020978 88021186 + 0.666667 NA Intergenic L1MA9|LINE|L1 247763 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 133.667-10 chr1 154265620 154266034 + 0.666667 NA intron (NM_001287816, intron 24 of 26) intron (NM_001287816, intron 24 of 26) 6100 NR_145714 109617023 NR_145714 ENSG00000201129 SNORA58B - small nucleolar RNA, H/ACA box 58B snoRNA 120.667-3 chr1 42293244 42293471 + 0.666667 NA intron (NM_001198850, intron 2 of 12) L1M5|LINE|L1 41598 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 114.833-22 chr15 60940034 60940248 + 0.666667 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 258572 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 127.5-68 chr8 96237704 96238137 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR -2286 NM_001199975 7381 Hs.131255 NM_006294 ENSG00000156467 UQCRB MC3DN3|QCR7|QP-C|QPC|UQBC|UQBP|UQCR6|UQPC ubiquinol-cytochrome c reductase binding protein protein-coding 126.833-51 chr5 54434998 54435377 + 0.666667 NA Intergenic Intergenic -20512 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 145.333-18 chr11 50719312 50719602 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 310310 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 215.833-18 chr5 21851182 21851594 + 0.666667 NA intron (NM_001317228, intron 4 of 11) intron (NM_001317228, intron 4 of 11) -33066 NR_132787 106635539 NR_132787 SNORA105A - small nucleolar RNA, H/ACA box 105A snoRNA 120.167-81 chr8 107392973 107393252 + 0.666667 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -56597 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 145.833-64 chr5 54799766 54800124 + 0.666667 NA Intergenic L1MB8|LINE|L1 -55687 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 146.667-30 chr14 25415286 25415705 + 0.666667 NA Intergenic Intergenic -365198 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 224-38 chr8 49506828 49507425 + 0.666667 NA intron (NR_134294, intron 1 of 1) AluSx1|SINE|Alu 5054 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 118.667-97 chr5 150722554 150722767 + 0.666667 NA intron (NM_001135643, intron 10 of 13) intron (NM_001135643, intron 10 of 13) -21598 NM_018047 55696 Hs.713564 NM_018047 ENSG00000086589 RBM22 Cwc2|ZC3H16|fSAP47 RNA binding motif protein 22 protein-coding 140.167-15 chr13 26996058 26996428 + 0.666667 NA Intergenic L1MB3|LINE|L1 -129290 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 181.667-61 chr7 39993338 39993750 + 0.666667 NA intron (NM_003718, intron 2 of 13) intron (NM_003718, intron 2 of 13) 43184 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 198.333-41 chr7 54787925 54788250 + 0.666667 NA intron (NR_110040, intron 2 of 2) intron (NR_110040, intron 2 of 2) 28774 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 177-62 chr6 63614366 63614780 + 0.666667 NA Intergenic AluSp|SINE|Alu -21229 NM_001370348 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 179-27 chr2 122113442 122113837 + 0.666667 NA Intergenic L1ME4a|LINE|L1 357988 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 146.333-44 chr18 70975169 70975506 + 0.666667 NA Intergenic L2a|LINE|L2 -324383 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 165-31 chr21 28510787 28511368 + 0.666667 NA Intergenic Intergenic -28241 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 175-49 chr5 178226453 178226855 + 0.666667 NA intron (NR_103509, intron 2 of 9) MER21A|LTR|ERVL 6148 NM_153373 85007 Hs.248746 NM_153373 ENSG00000175309 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 142.5-12 chr10 74064192 74064719 + 0.666667 NA intron (NM_014000, intron 2 of 21) AluJo|SINE|Alu 66339 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 186.167-13 chr12 91157275 91157848 + 0.666667 NA intron (NM_133504, intron 1 of 4) intron (NM_133504, intron 1 of 4) 21085 NM_133504 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 134-65 chr2 159850894 159851146 + 0.666667 NA intron (NM_002349, intron 21 of 34) MIRb|SINE|MIR -52765 NM_001198764 9936 Hs.130014 NM_014880 ENSG00000241399 CD302 BIMLEC|CLEC13A|DCL-1|DCL1 CD302 molecule protein-coding 142.167-71 chr6 124597027 124597448 + 0.666667 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 314232 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 232-10 chr13 90948442 90948936 + 0.666667 NA Intergenic L1M1|LINE|L1 -22092 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 229.667-16 chr2 52202927 52203432 + 0.666667 NA intron (NR_135237, intron 7 of 10) L1MA5A|LINE|L1 -167469 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 131-20 chr14 69906789 69907028 + 0.666667 NA intron (NM_001034852, intron 1 of 11) L2a|LINE|L2 27492 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 139.833-59 chr4 99047680 99047907 + 0.666667 NA intron (NM_015143, intron 8 of 10) intron (NM_015143, intron 8 of 10) 40995 NM_000671 128 Hs.78989 NM_000671 ENSG00000197894 ADH5 ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR|HEL-S-60p alcohol dehydrogenase 5 (class III), chi polypeptide protein-coding 126.5-7 chr10 89627340 89627855 + 0.666667 NA intron (NM_148977, intron 1 of 6) L2a|LINE|L2 16319 NM_148978 53354 Hs.163555 NM_138316 ENSG00000152782 PANK1 PANK pantothenate kinase 1 protein-coding 248.833-10 chr4 65594915 65595604 + 0.666667 NA intron (NM_001281767, intron 3 of 16) (ATGT)n|Simple_repeat|Simple_repeat 74229 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 161.667-12 chr1 196607294 196607569 + 0.666667 NA intron (NM_001287820, intron 1 of 26) intron (NM_001287820, intron 1 of 26) 1009 NM_001287819 343450 Hs.657046 NM_198503 ENSG00000162687 KCNT2 EIEE57|KCa4.2|SLICK|SLO2.1 potassium sodium-activated channel subfamily T member 2 protein-coding 171-11 chr12 43695167 43695614 + 0.666667 NA Intergenic MLT1N2|LTR|ERVL-MaLR 63400 NM_001098614 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 135-8 chr1 216738213 216738599 + 0.666667 NA intron (NM_001243513, intron 1 of 7) intron (NM_001243513, intron 1 of 7) -14934 NM_001243519 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 272.166 chr1 192541288 192542031 + 0.666667 NA Intergenic L2c|LINE|L2 -34114 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 158.667-27 chr14 83732809 83733242 + 0.666667 NA Intergenic THE1C|LTR|ERVL-MaLR 1090393 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 113.333-68 chr22 37503073 37503554 + 0.666667 NA intron (NM_014550, intron 9 of 19) intron (NM_014550, intron 9 of 19) 16102 NM_014550 29775 Hs.57973 NM_014550 ENSG00000100065 CARD10 BIMP1|CARMA3 caspase recruitment domain family member 10 protein-coding 145-63 chr4 87482550 87482912 + 0.666667 NA intron (NM_004684, intron 7 of 10) MER5B|DNA|hAT-Charlie 46772 NM_001291976 8404 Hs.62886 NM_004684 ENSG00000152583 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC like 1 protein-coding 135.667-110 chr8 142887909 142888359 + 0.666667 NA Intergenic MSTA-int|LTR|ERVL-MaLR -8314 NM_001026213 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 132.5-19 chr12 85598204 85598451 + 0.666667 NA Intergenic AluSp|SINE|Alu 238082 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 125-93 chr8 65617896 65618097 + 0.666667 NA intron (NM_018120, intron 3 of 6) AluSg|SINE|Alu 16181 NM_018120 55156 Hs.269542 NM_018120 ENSG00000104442 ARMC1 Arcp armadillo repeat containing 1 protein-coding 141.667-69 chr3 165481270 165481523 + 0.666667 NA intron (NR_125764, intron 3 of 5) MSTB2|LTR|ERVL-MaLR 274436 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 171.167-5 chr1 177684851 177685288 + 0.666667 NA Intergenic L1MEc|LINE|L1 -15455 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 146.167-69 chr7 84772210 84772500 + 0.666667 NA Intergenic Intergenic 239879 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 181.667-68 chr8 104055290 104055786 + 0.666667 NA intron (NM_001348499, intron 19 of 23) intron (NM_001348499, intron 19 of 23) -167797 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 162.667-82 chr8 86580693 86581039 + 0.666667 NA intron (NM_019098, intron 15 of 17) intron (NM_019098, intron 15 of 17) 66431 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 130.333-28 chr13 67536578 67536931 + 0.666667 NA Intergenic L1MC3|LINE|L1 164367 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 133-5 chr1 196386129 196386670 + 0.666667 NA intron (NM_001287820, intron 13 of 26) MIR|SINE|MIR 196082 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 121.5-19 chr11 16827644 16828125 + 0.666667 NA intron (NM_001329630, intron 9 of 26) intron (NM_001329630, intron 9 of 26) 89237 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 183.667-8 chr1 99981535 99981983 + 0.666667 NA intron (NM_001271685, intron 1 of 7) AluSz6|SINE|Alu 11242 NM_001271685 23443 Hs.448979 NM_012243 ENSG00000117620 SLC35A3 AMRS solute carrier family 35 member A3 protein-coding 229.167-6 chr10 131859933 131860522 + 0.666667 NA Intergenic Intergenic -40781 NM_018461 55844 Hs.380372 NM_018461 ENSG00000175470 PPP2R2D B55D|B55delta|MDS026 protein phosphatase 2 regulatory subunit Bdelta protein-coding 140.5-72 chr7 53584445 53584810 + 0.666667 NA Intergenic L1M7|LINE|L1 227304 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 134-56 chr19 28077098 28077365 + 0.666667 NA Intergenic Intergenic -283291 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 120-86 chr5 3425010 3425328 + 0.666667 NA intron (NR_033898, intron 2 of 4) intron (NR_033898, intron 2 of 4) -27647 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 133.833 chr1 71340765 71341019 + 0.666667 NA Intergenic MER50-int|LTR|ERV1 259568 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 266.834-6 chr5 112699451 112700397 + 0.666667 NA Intergenic L1MD|LINE|L1 -7574 NM_001127511 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 196.833-19 chr5 8837155 8837812 + 0.666667 NA Intergenic Intergenic -2249 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 150.167-33 chr2 165080089 165080376 + 0.666667 NA Intergenic Intergenic 123818 NM_006922 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 186.667-79 chr8 83974322 83974668 + 0.666667 NA Intergenic Intergenic -208292 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 134-60 chr2 116381722 116382208 + 0.666667 NA Intergenic L1MCb|LINE|L1 1038150 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 142.167-13 chr10 86494769 86495250 + 0.666667 NA intron (NM_001318328, intron 4 of 18) intron (NM_001318328, intron 4 of 18) 26775 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 114.833-63 chr6 165145517 165145866 + 0.666667 NA Intergenic Intergenic 163914 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 116.167-11 chr1 194351468 194351675 + 0.666667 NA Intergenic Intergenic 1046826 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 169-53 chr6 148051151 148051498 + 0.666667 NA Intergenic Intergenic -221004 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 127.333-48 chr2 59468572 59468796 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger 250976 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 124-47 chr2 322191 322429 + 0.666667 NA intron (NR_146953, intron 3 of 3) intron (NR_146953, intron 3 of 3) 6026 NR_146953 105373350 NR_146953 LINC01865 - long intergenic non-protein coding RNA 1865 ncRNA 226.667-21 chr4 11704814 11705361 + 0.666667 NA Intergenic Intergenic 64381 NR_146995 105374484 Hs.581972 NR_146995 ENSG00000248300 LINC02360 - long intergenic non-protein coding RNA 2360 ncRNA 147-17 chr12 115988032 115988406 + 0.666667 NA intron (NM_015335, intron 17 of 30) intron (NM_015335, intron 17 of 30) 160435 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 172.167-6 chr10 17009347 17009730 + 0.666667 NA intron (NM_001081, intron 28 of 66) intron (NM_001081, intron 28 of 66) 120279 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 186-58 chr8 92934697 92935218 + 0.666667 NA intron (NM_001171798, intron 1 of 4) intron (NM_001171798, intron 1 of 4) 30632 NM_001191036 286144 Hs.440643 NM_001171795 ENSG00000205133 TRIQK C8orf83|PRO0845|UPF0599 triple QxxK/R motif containing protein-coding 141.333-53 chr2 169272053 169272392 + 0.666667 NA intron (NM_004525, intron 15 of 78) intron (NM_004525, intron 15 of 78) 90312 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 127-37 chr15 83298198 83298582 + 0.666667 NA Intergenic Intergenic -13726 NM_001717 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 190-43 chr4 11541690 11542144 + 0.666667 NA Intergenic L1ME3Cz|LINE|L1 -113023 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 135.667-87 chr5 77949243 77949551 + 0.666667 NA intron (NR_105012, intron 1 of 1) LTR16|LTR|ERVL -8850 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 162.667-9 chr11 55006298 55006814 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr -255599 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 181.333-10 chr11 119311417 119311890 + 0.666667 NA intron (NM_006500, intron 10 of 15) intron (NM_006500, intron 10 of 15) 1359 NR_106814 102465453 NR_106814 ENSG00000284148 MIR6756 hsa-mir-6756 microRNA 6756 ncRNA 122.333-8 chr10 29894486 29894772 + 0.666667 NA Intergenic L1M3|LINE|L1 -157693 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 157.333-70 chr8 9837607 9838017 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 65517 NR_024281 157627 Hs.12513 NR_024281 ENSG00000253230 LINC00599 Rncr3 long intergenic non-protein coding RNA 599 ncRNA 214.667-24 chr3 117841520 117841888 + 0.666667 NA Intergenic Intergenic -150779 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 131.667-31 chr14 49744493 49744796 + 0.666667 NA intron (NM_172193, intron 12 of 12) MER2|DNA|TcMar-Tigger -23509 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 159.667-87 chr7 107106933 107107403 + 0.666667 NA intron (NM_002736, intron 2 of 10) AluSx1|SINE|Alu -61793 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 206.5-25 chr5 77509563 77509995 + 0.666667 NA Intergenic L1MB8|LINE|L1 -17463 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 152.5-70 chr8 101300142 101300568 + 0.666667 NA Intergenic Intergenic -68538 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 165.333-55 chr6 122644664 122645038 + 0.666667 NA intron (NM_032471, intron 2 of 3) intron (NM_032471, intron 2 of 3) -7878 NM_001270395 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 213-2 chr1 168241126 168241656 + 0.666667 NA intron (NM_199344, intron 7 of 7) AluSz|SINE|Alu 6039 NR_026844 84832 Hs.537067 NR_026844 ENSG00000214262 ANKRD36BP1 ANKRD26L1|ANKRD36BL1 ankyrin repeat domain 36B pseudogene 1 pseudo 117.667-86 chr4 35937069 35937288 + 0.666667 NA Intergenic Intergenic 306761 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 146.333-35 chr17 45289308 45289715 + 0.666667 NA intron (NM_003954, intron 2 of 15) intron (NM_003954, intron 2 of 15) -27417 NM_152343 124783 Hs.412719 NM_152343 ENSG00000184361 SPATA32 AEP2|C17orf46|TEX34|VAD1.2 spermatogenesis associated 32 protein-coding 231-2 chr1 111430818 111431304 + 0.666667 NA Intergenic L1MC5|LINE|L1 -3326 NM_002557 5016 Hs.1154 NM_002557 ENSG00000085465 OVGP1 CHIT5|EGP|MUC9|OGP oviductal glycoprotein 1 protein-coding 117.333-85 chr4 184807131 184807414 + 0.666667 NA intron (NM_001995, intron 1 of 20) intron (NM_001995, intron 1 of 20) 1329 NM_001286712 2180 Hs.406678 NM_001995 ENSG00000151726 ACSL1 ACS1|FACL1|FACL2|LACS|LACS1|LACS2 acyl-CoA synthetase long chain family member 1 protein-coding 134.667-48 chr2 44852789 44853235 + 0.666667 NA Intergenic Intergenic 85876 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 167.333-41 chr21 20977924 20978323 + 0.666667 NA Intergenic L1MA5|LINE|L1 -20286 NM_001352595 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 125.834-2 chr4 30528268 30528857 + 0.666667 NA Intergenic L2c|LINE|L2 -191807 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 155.333-95 chr8 118170932 118171249 + 0.666667 NA intron (NR_146234, intron 4 of 5) L1MB8|LINE|L1 -59271 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 134.667-67 chr4 31017587 31017970 + 0.666667 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -153366 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 114.167-87 chr7 1219475 1219819 + 0.666667 NA Intergenic Intergenic -13225 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 210.667-35 chr3 115712720 115713249 + 0.666667 NA intron (NM_002045, intron 2 of 2) intron (NM_002045, intron 2 of 2) 89474 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 155.333-85 chr5 119361557 119361930 + 0.666667 NA intron (NM_014350, intron 1 of 1) intron (NM_014350, intron 1 of 1) 5724 NM_014350 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 174.5-41 chr6 131615977 131616299 + 0.666667 NA intron (NM_015979, intron 9 of 30) MIR3|SINE|MIR 12104 NM_004830 9439 Hs.29679 NM_004830 ENSG00000112282 MED23 ARC130|CRSP130|CRSP133|CRSP3|DRIP130|MRT18|SUR-2|SUR2 mediator complex subunit 23 protein-coding 204.5-35 chr6 38988716 38989143 + 0.666667 NA intron (NM_001371, intron 86 of 91) L2c|LINE|L2 -35822 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 169.5-44 chr3 23385376 23385720 + 0.666667 NA intron (NM_001370225, intron 3 of 5) MamRTE1|LINE|RTE-BovB 182221 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 271.833-10 chr20 38526267 38526723 + 0.666667 NA intron (NM_001282917, intron 13 of 29) intron (NM_001282917, intron 13 of 29) 9932 NR_039605 100616190 NR_039605 ENSG00000275453 MIR548O2 - microRNA 548o-2 ncRNA 154.667-31 chr17 63818665 63818959 + 0.666667 NA TTS (NM_017647) TTS (NM_017647) -8619 NM_002805 5705 Hs.79387 NM_002805 ENSG00000087191 PSMC5 S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG proteasome 26S subunit, ATPase 5 protein-coding 130-87 chr6 48620046 48620385 + 0.666667 NA Intergenic Intergenic -551526 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 210.667-53 chr8 86516570 86517164 + 0.666667 NA intron (NM_003909, intron 2 of 16) intron (NM_003909, intron 2 of 16) 2432 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 114.333-28 chr12 65637254 65637505 + 0.666667 NA intron (NR_120432, intron 1 of 4) intron (NR_120432, intron 1 of 4) 4993 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 202.167-19 chr2 123536878 123537402 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR -463659 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 157.833-14 chr11 96433359 96433647 + 0.666667 NA Intergenic L1ME4a|LINE|L1 43490 NM_003772 8690 Hs.105940 NM_003772 ENSG00000183340 JRKL HHMJG JRK like protein-coding 172.667-55 chr3 157072940 157073323 + 0.666667 NA Intergenic MIRc|SINE|MIR -8710 NR_135546 105374177 Hs.634263 NR_135546 ENSG00000241544 LINC02029 - long intergenic non-protein coding RNA 2029 ncRNA 115.667-35 chr14 85604034 85604433 + 0.666667 NA intron (NM_001346143, intron 1 of 1) intron (NM_001346143, intron 1 of 1) 70884 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 149.5-15 chr11 75967235 75967815 + 0.666667 NA intron (NM_003369, intron 7 of 14) intron (NM_003369, intron 7 of 14) 152315 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 178.167 chr1 26851378 26851795 + 0.666667 NA intron (NM_032283, intron 6 of 7) MIRc|SINE|MIR -11563 NM_006142 2810 Hs.523718 NM_006142 ENSG00000175793 SFN YWHAS stratifin protein-coding 133.667-40 chr16 77237510 77237894 + 0.666667 NA Intergenic Intergenic 38294 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 197.5-49 chr7 45245318 45245699 + 0.666667 NA Intergenic Intergenic 87717 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 182.667-48 chr5 128835248 128835547 + 0.666667 NA Intergenic Intergenic -129730 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 145.167-44 chr3 31869868 31870159 + 0.666667 NA intron (NM_017784, intron 3 of 11) LTR12C|LTR|ERV1 -111737 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 152-41 chr6 40895290 40895607 + 0.666667 NA intron (NR_110873, intron 2 of 5) intron (NR_110873, intron 2 of 5) 127832 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 119.167-95 chr8 101900769 101900959 + 0.666667 NA intron (NM_001040624, intron 4 of 7) L1MD2|LINE|L1 -83568 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 144-22 chr16 68209286 68209545 + 0.666667 NA intron (NM_173165, intron 9 of 9) intron (NM_173165, intron 9 of 9) 24084 NR_106831 102466194 NR_106831 ENSG00000284259 MIR6773 hsa-mir-6773 microRNA 6773 ncRNA 154-3 chr1 172142225 172142534 + 0.666667 NA non-coding (NR_038397, exon 1 of 1) non-coding (NR_038397, exon 1 of 1) 2265 NR_029618 406977 NR_029618 ENSG00000208024 MIR199A2 MIR-199-s|MIRN199A2|mir-199a-2 microRNA 199a-2 ncRNA 145.333-28 chr14 71828391 71828879 + 0.666667 NA Intergenic Intergenic -103536 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 156.667-10 chr10 7365886 7366161 + 0.666667 NA intron (NM_001029880, intron 4 of 20) intron (NM_001029880, intron 4 of 20) 43318 NM_001018039 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 227.333-27 chr4 57586044 57586452 + 0.666667 NA Intergenic MIRb|SINE|MIR 160376 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 187-17 chr18 73331463 73331767 + 0.666667 NA intron (NR_038340, intron 1 of 2) MLT2D|LTR|ERVL 6674 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 138-93 chr6 144072637 144072947 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -8193 NM_001289038 5325 Hs.743225 NM_002656 ENSG00000118495 PLAGL1 LOT1|ZAC|ZAC1 PLAG1 like zinc finger 1 protein-coding 116.667-76 chr3 104837549 104837841 + 0.666667 NA Intergenic Intergenic -529018 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 172-21 chr14 51388340 51388657 + 0.666667 NA Intergenic Intergenic 8637 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 125.167-42 chr2 152952297 152952530 + 0.666667 NA Intergenic Intergenic 233776 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 125.667-10 chr1 211484084 211484362 + 0.666667 NA intron (NM_183059, intron 1 of 2) L2c|LINE|L2 8694 NM_001164688 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3, GUCY2D regulator protein-coding 188.5-31 chr2 119818196 119818494 + 0.666667 NA intron (NM_002830, intron 2 of 26) L1M4a1|LINE|L1 58423 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 144-65 chr6 140268605 140268915 + 0.666667 NA Intergenic Intergenic 63508 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 196-22 chr14 22079907 22080358 + 0.666667 NA Intergenic Intergenic 352621 NR_148363 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 239-19 chr8 124167514 124167974 + 0.666667 NA intron (NR_103547, intron 1 of 4) intron (NR_103547, intron 1 of 4) 3778 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 243.667-24 chr4 40185829 40186298 + 0.666667 NA Intergenic Intergenic -5017 NM_001278368 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 172.833-37 chr4 76104853 76105362 + 0.666667 NA intron (NM_001130016, intron 10 of 11) intron (NM_001130016, intron 10 of 11) 30412 NM_001179 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 166.667-59 chr7 139190872 139191327 + 0.666667 NA 3' UTR (NM_024926, exon 18 of 18) 3' UTR (NM_024926, exon 18 of 18) -40138 NM_173569 254048 Hs.153458 NM_173569 ENSG00000157741 UBN2 - ubinuclein 2 protein-coding 223.333-12 chr13 94626073 94626556 + 0.666667 NA intron (NM_180989, intron 8 of 8) intron (NM_180989, intron 8 of 8) 24457 NM_180989 160897 Hs.439363 NM_180989 ENSG00000152749 GPR180 ITR G protein-coupled receptor 180 protein-coding 125-47 chr20 11480581 11480837 + 0.666667 NA Intergenic L1MA3|LINE|L1 -207326 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 118-85 chr4 92390722 92390986 + 0.666667 NA intron (NM_001286838, intron 1 of 14) L2a|LINE|L2 86455 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 242.5-2 chr11 132741703 132742262 + 0.666667 NA intron (NM_001319104, intron 1 of 6) AluSp|SINE|Alu 201655 NM_001319106 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 113.833-4 chr1 77190629 77191038 + 0.666667 NA intron (NM_005482, intron 3 of 10) intron (NM_005482, intron 3 of 10) 28597 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 119.667-51 chr2 169487162 169487410 + 0.666667 NA intron (NM_152384, intron 3 of 11) intron (NM_152384, intron 3 of 11) 7792 NM_152384 129880 Hs.233398 NM_152384 ENSG00000163093 BBS5 - Bardet-Biedl syndrome 5 protein-coding 181-42 chr3 58718009 58718397 + 0.666667 NA Intergenic LTR81C|LTR|Gypsy -51429 NM_138805 131177 Hs.61265 NM_138805 ENSG00000198643 FAM3D EF7|OIT1 family with sequence similarity 3 member D protein-coding 138-84 chr5 73841382 73841795 + 0.666667 NA intron (NM_001177693, intron 11 of 35) AluSz|SINE|Alu 28042 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 117-32 chr15 33569656 33569875 + 0.666667 NA intron (NM_001243996, intron 12 of 102) L1MB4|LINE|L1 258798 NM_001036 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 179.333-11 chr11 78292895 78293181 + 0.666667 NA intron (NM_080491, intron 1 of 9) MER5A|DNA|hAT-Charlie 48842 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 124.333-15 chr11 69927677 69927985 + 0.666667 NA Intergenic Intergenic -108415 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 153-41 chr4 93473445 93473811 + 0.666667 NA intron (NM_001286838, intron 10 of 14) intron (NM_001286838, intron 10 of 14) -355125 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 198.5-37 chr6 37605322 37605751 + 0.666667 NA Intergenic Intergenic -50114 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 126-81 chr6 48015836 48016070 + 0.666667 NA intron (NM_207499, intron 1 of 2) intron (NM_207499, intron 1 of 2) 52736 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 221.167-2 chr1 59840457 59841099 + 0.666667 NA intron (NM_015888, intron 8 of 21) intron (NM_015888, intron 8 of 21) 25829 NM_015888 51361 Hs.378836 NM_015888 ENSG00000134709 HOOK1 HK1 hook microtubule tethering protein 1 protein-coding 174.333-61 chr7 127839383 127839724 + 0.666667 NA intron (NM_014390, intron 11 of 23) intron (NM_014390, intron 11 of 23) -157956 NR_027330 27099 Hs.657377 NM_014411 ENSG00000279078 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 ncRNA 161.333-49 chr3 166097979 166098443 + 0.666667 NA Intergenic Intergenic -260788 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 174.333-48 chr5 148934198 148934655 + 0.666667 NA Intergenic Intergenic 107833 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 157.5-34 chr2 164411998 164412466 + 0.666667 NA Intergenic Intergenic 156263 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 116.5-14 chr12 8894012 8894533 + 0.666667 NA Intergenic AluSc8|SINE|Alu -20237 NM_004426 1911 Hs.744902 NM_004426 ENSG00000111752 PHC1 EDR1|HPH1|MCPH11|RAE28 polyhomeotic homolog 1 protein-coding 118.667-19 chr10 87871683 87871946 + 0.666667 NA intron (NM_001304717, intron 2 of 9) intron (NM_001304717, intron 2 of 9) 8189 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 180.167-60 chr9 28448284 28448682 + 0.666667 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 270822 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 135.833-36 chr2 119959367 119959606 + 0.666667 NA intron (NM_002830, intron 22 of 26) BC200|scRNA|scRNA -53591 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 148.833-22 chr15 68103472 68103740 + 0.666667 NA intron (NM_016166, intron 2 of 13) L1MB7|LINE|L1 49030 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 122.333-30 chr14 35954933 35955305 + 0.666667 NA Intergenic Intergenic -115308 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 185.667-32 chr3 80539132 80539577 + 0.666667 NA Intergenic L1ME3A|LINE|L1 -225543 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 134-109 chr9 73180309 73180626 + 0.666667 NA Intergenic Intergenic 28602 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 175.5-57 chr7 136651269 136651553 + 0.666667 NA Intergenic Intergenic -217241 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 214.333-10 chr11 28500118 28500522 + 0.666667 NA Intergenic Intergenic -22772 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 156.667-28 chr13 22175771 22176207 + 0.666667 NA Intergenic Intergenic -34296 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 145.333-101 chr9 78538013 78538330 + 0.666667 NA Intergenic Intergenic 241046 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 179-51 chr8 76925666 76926124 + 0.666667 NA Intergenic L2c|LINE|L2 40955 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 148.667-4 chr1 107817992 107818282 + 0.666667 NA intron (NM_006113, intron 2 of 26) intron (NM_006113, intron 2 of 26) -79086 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 154.833-24 chr19 39119651 39120042 + 0.666667 NA Intergenic AluJr4|SINE|Alu -5940 NM_001014831 10298 Hs.20447 NM_005884 ENSG00000130669 PAK4 - p21 (RAC1) activated kinase 4 protein-coding 216-15 chr19 43523599 43524057 + 0.666667 NA intron (NM_001320869, intron 1 of 4) AluSx|SINE|Alu 3373 NM_001320868 23474 Hs.7486 NM_014297 ENSG00000105755 ETHE1 HSCO|YF13H12 ETHE1 persulfide dioxygenase protein-coding 114.667-99 chr5 29553346 29553574 + 0.666667 NA Intergenic L1MA5|LINE|L1 -157484 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 243-25 chr5 55370363 55371032 + 0.666667 NA intron (NM_015360, intron 16 of 26) intron (NM_015360, intron 16 of 26) 62708 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 182.167-36 chr6 83718707 83719165 + 0.666667 NA intron (NR_136251, intron 1 of 2) intron (NR_136251, intron 1 of 2) 9494 NR_136251 105377879 Hs.736886 NR_136251 LOC105377879 - uncharacterized LOC105377879 ncRNA 146.333-78 chr5 30443819 30444104 + 0.666667 NA Intergenic L1MA3|LINE|L1 563401 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 145-51 chr2 209315029 209315329 + 0.666667 NA Intergenic Intergenic -108868 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 262.5-17 chr3 160433560 160434184 + 0.666667 NA 3' UTR (NM_005496, exon 23 of 23) 3' UTR (NM_005496, exon 23 of 23) 15914 NM_173084 286827 Hs.212957 NM_173084 ENSG00000213186 TRIM59 IFT80L|MRF1|RNF104|TRIM57|TSBF1 tripartite motif containing 59 protein-coding 170.333-18 chr12 38444383 38444743 + 0.666667 NA Intergenic Intergenic 127789 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 164-12 chr12 66354103 66354614 + 0.666667 NA intron (NM_001366722, intron 23 of 24) L2a|LINE|L2 51813 NR_135080 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 117.167-23 chr14 81229553 81229913 + 0.666667 NA Intergenic Tigger7|DNA|TcMar-Tigger -8343 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 132.333-54 chr2 77925620 77926010 + 0.666667 NA intron (NR_110288, intron 1 of 3) Tigger1|DNA|TcMar-Tigger 9881 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 174-44 chr4 78468641 78469147 + 0.666667 NA intron (NM_025074, intron 50 of 73) intron (NM_025074, intron 50 of 73) -82876 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 155.833-59 chr5 121010436 121010906 + 0.666667 NA Intergenic Intergenic -311879 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 187.167-13 chr17 73766752 73767267 + 0.666667 NA intron (NR_027146, intron 2 of 3) intron (NR_027146, intron 2 of 3) -19813 NR_040020 400620 Hs.348644 NR_040020 ENSG00000234721 LINC02092 - long intergenic non-protein coding RNA 2092 ncRNA 212.5-12 chr2 27755657 27756107 + 0.666667 NA Intergenic AluY|SINE|Alu -15835 NM_145330 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 255.833-12 chr4 53886372 53887094 + 0.666667 NA Intergenic L1MB7|LINE|L1 100549 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 154.667-5 chr1 194819657 194820218 + 0.666667 NA Intergenic Intergenic 1268778 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 183.667-57 chr4 103355812 103356230 + 0.666667 NA Intergenic L1MEf|LINE|L1 -69021 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 150.333-88 chr6 35507967 35508287 + 0.666667 NA intron (NM_001289395, intron 7 of 13) intron (NM_001289395, intron 7 of 13) 4769 NM_001289395 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 197.667-30 chr2 120044244 120044609 + 0.666667 NA intron (NM_001330307, intron 3 of 16) intron (NM_001330307, intron 3 of 16) 31349 NM_001330307 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 113.667-122 chr8 26015205 26015513 + 0.666667 NA intron (NM_022659, intron 6 of 15) intron (NM_022659, intron 6 of 15) 30054 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 256.5-13 chr2 67902631 67903278 + 0.666667 NA Intergenic Intergenic -77392 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 147.333-32 chr16 47376479 47376882 + 0.666667 NA intron (NM_030790, intron 6 of 17) intron (NM_030790, intron 6 of 17) 84383 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 142.167-24 chr15 26806625 26806909 + 0.666667 NA Intergenic Intergenic -33004 NM_021912 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 175-37 chr3 56109522 56109997 + 0.666667 NA intron (NR_132749, intron 6 of 17) intron (NR_132749, intron 6 of 17) -257165 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 122.667-92 chr7 35334195 35334502 + 0.666667 NA intron (NR_038864, intron 1 of 2) intron (NR_038864, intron 1 of 2) 20493 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 131-5 chr10 107624083 107624373 + 0.666667 NA Intergenic L1MA4|LINE|L1 445065 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 152.167-6 chr10 24375955 24376285 + 0.666667 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) -73294 NM_001321681 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 166.5-58 chr8 14329377 14329712 + 0.666667 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 523966 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 128-13 chr10 64236918 64237229 + 0.666667 NA Intergenic Intergenic -588455 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 206.667-37 chr5 38097885 38098451 + 0.666667 NA intron (NR_147009, intron 2 of 2) AluSx|SINE|Alu -50312 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 160.333-3 chr1 147401573 147401842 + 0.666667 NA intron (NR_038423, intron 3 of 3) L1M4a2|LINE|L1 116168 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 164.333-13 chr11 116151159 116151641 + 0.666667 NA Intergenic L1MD1|LINE|L1 -391200 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 165.667-46 chr4 30753148 30753608 + 0.666667 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 33009 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 230.667-35 chr8 142594539 142595349 + 0.666667 NA Intergenic Intergenic 19535 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 129.667-73 chr4 26813741 26814099 + 0.666667 NA Intergenic LTR33|LTR|ERVL 46324 NR_134675 105374546 Hs.548859 NR_134673 STIM2-AS1 - STIM2 antisense RNA 1 ncRNA 167.833 chr1 41303484 41303975 + 0.666667 NA Intergenic HSMAR1|DNA|TcMar-Mariner -57705 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 125.333-116 chr7 157350998 157351334 + 0.666667 NA intron (NM_005494, intron 1 of 7) AluSp|SINE|Alu 14162 NM_058246 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 157.167-58 chr7 83929761 83930137 + 0.666667 NA Intergenic L1PREC2|LINE|L1 264840 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 216.167-2 chr1 117410440 117410951 + 0.666667 NA intron (NM_006699, intron 3 of 12) L1M5|LINE|L1 43246 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 130.5-58 chr4 47359217 47359444 + 0.666667 NA intron (NM_000812, intron 5 of 8) intron (NM_000812, intron 5 of 8) 104372 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 194.5-41 chr7 20650010 20650444 + 0.666667 NA intron (NM_001163942, intron 3 of 5) intron (NM_001163942, intron 3 of 5) 2897 NM_001163993 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 134.667-105 chr8 56861063 56861345 + 0.666667 NA Intergenic Intergenic 132663 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 214.667-37 chr7 88798949 88799348 + 0.666667 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -3411 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 123.333-43 chr15 81467863 81468249 + 0.666667 NA Intergenic L1PA8A|LINE|L1 -93843 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 132.333-73 chr3 180710299 180710516 + 0.666667 NA intron (NR_109986, intron 13 of 13) intron (NR_109986, intron 13 of 13) -30918 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 120.5-18 chr11 78202792 78203116 + 0.666667 NA intron (NM_020798, intron 6 of 10) intron (NM_020798, intron 6 of 10) 14035 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding 134.167-18 chr12 776876 777101 + 0.666667 NA intron (NM_001184985, intron 1 of 27) intron (NM_001184985, intron 1 of 27) 24065 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 119.333-98 chr7 25208524 25208742 + 0.666667 NA Intergenic L1MA9|LINE|L1 19853 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 133.667-12 chr1 196728049 196728340 + 0.666667 NA intron (NM_000186, intron 14 of 21) intron (NM_000186, intron 14 of 21) -46606 NM_001166624 10878 Hs.709217 NM_021023 ENSG00000116785 CFHR3 CFHL3|DOWN16|FHR-3|FHR3|HLF4 complement factor H related 3 protein-coding 167-11 chr10 96166403 96166824 + 0.666667 NA intron (NR_138482, intron 3 of 4) AluY|SINE|Alu 35991 NM_001330734 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 149.333-20 chr12 32052084 32052350 + 0.666667 NA Intergenic PABL_B|LTR|ERV1 -54590 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 240.667-9 chr11 76865822 76866465 + 0.666667 NA intron (NM_001300953, intron 1 of 9) Tigger6a|DNA|TcMar-Tigger 5225 NM_018367 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 191.5-6 chr10 84379519 84379885 + 0.666667 NA intron (NM_018999, intron 3 of 10) L1ME3Cz|LINE|L1 -45237 NM_001284243 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 234.667-8 chr10 71386943 71387476 + 0.666667 NA Intergenic AluY|SINE|Alu -9711 NM_022124 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 159.667-16 chr10 31001309 31001587 + 0.666667 NA intron (NM_001143766, intron 1 of 7) intron (NM_001143766, intron 1 of 7) -1931 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 154-11 chr10 65354038 65354406 + 0.666667 NA Intergenic MER4B|LTR|ERV1 -217203 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 136.833-7 chr11 11595908 11596398 + 0.666667 NA intron (NM_001363464, intron 1 of 9) L1PA8A|LINE|L1 25852 NM_198516 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 211.5-25 chr4 159034973 159035393 + 0.666667 NA promoter-TSS (NM_152543) promoter-TSS (NM_152543) 46 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 258-2 chr2 33148383 33149047 + 0.666667 NA intron (NM_206943, intron 5 of 33) intron (NM_206943, intron 5 of 33) 14118 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 175.167-50 chr9 10115699 10116247 + 0.666667 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 316581 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 155-7 chr1 161679359 161679747 + 0.666667 NA TTS (NM_001002275) TTS (NM_001002275) 5699 NR_002595 641311 Hs.625293 NR_002595 ENSG00000213075 RPL31P11 RPL31_1_108 ribosomal protein L31 pseudogene 11 pseudo 137.833-51 chr8 71497428 71497812 + 0.666667 NA intron (NM_001370334, intron 2 of 19) L1MA8|LINE|L1 50084 NM_001370334 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 211.167-37 chr8 131717787 131718255 + 0.666667 NA Intergenic Intergenic -186072 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 252.333-15 chr21 41993910 41994349 + 0.666667 NA intron (NM_020727, intron 1 of 1) intron (NM_020727, intron 1 of 1) -15065 NR_119384 150142 Hs.143833 NM_198078 ENSG00000237232 ZNF295-AS1 C21orf121|NCRNA00318|PRED87 ZNF295 antisense RNA 1 ncRNA 131.333-64 chr22 27403482 27403734 + 0.666667 NA Intergenic Intergenic 92957 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 205.667-48 chr5 62311041 62311623 + 0.666667 NA intron (NM_001243952, intron 2 of 20) intron (NM_001243952, intron 2 of 20) 5170 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 168.167-31 chr2 61839203 61839620 + 0.666667 NA intron (NM_001201543, intron 3 of 6) intron (NM_001201543, intron 3 of 6) 14649 NM_032180 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 142.5-67 chr7 51580230 51580582 + 0.666667 NA Intergenic L1M4|LINE|L1 -187150 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 131.667-100 chr5 34732838 34733162 + 0.666667 NA intron (NM_001145525, intron 4 of 19) intron (NM_001145525, intron 4 of 19) 45441 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 171.667-6 chr1 198086991 198087334 + 0.666667 NA Intergenic Intergenic -69836 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 212.667-35 chr5 91086240 91086719 + 0.666667 NA intron (NR_003149, intron 86 of 89) intron (NR_003149, intron 86 of 89) 227923 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 147-72 chr5 149399692 149400074 + 0.666667 NA intron (NM_001317987, intron 1 of 2) LTR67B|LTR|ERVL 4319 NM_001317987 27190 Hs.156979 NM_014443 ENSG00000127743 IL17B IL-17B|IL-20|NIRF|ZCYTO7 interleukin 17B protein-coding 117.5-7 chr10 105961620 105961930 + 0.666667 NA Intergenic LTR16|LTR|ERVL -141442 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 185.333-24 chr17 47741483 47742034 + 0.666667 NA intron (NM_013351, intron 1 of 5) intron (NM_013351, intron 1 of 5) 8522 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 117.167-25 chr14 100508526 100508802 + 0.666667 NA intron (NM_001350950, intron 3 of 5) L1ME1|LINE|L1 59406 NM_001159531 57596 Hs.211751 NM_020836 ENSG00000183092 BEGAIN - brain enriched guanylate kinase associated protein-coding 198.667-50 chr6 56235047 56235616 + 0.666667 NA intron (NM_001318751, intron 1 of 30) intron (NM_001318751, intron 1 of 30) 12249 NM_001318751 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 143.5-7 chr11 12293994 12294417 + 0.666667 NA exon (NM_032867, exon 3 of 9) exon (NM_032867, exon 3 of 9) 7305 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 131.667-74 chr3 3517822 3518112 + 0.666667 NA Intergenic Intergenic -281464 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 164.667-78 chr9 134858686 134859031 + 0.666667 NA intron (NR_103451, intron 1 of 1) L1MEf|LINE|L1 -8051 NR_039696 100616212 NR_039696 ENSG00000266514 MIR3689F mir-3689f microRNA 3689f ncRNA 239.167-14 chr6 55973338 55973795 + 0.666667 NA Intergenic Intergenic -97976 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 153.167-59 chr8 89161568 89161887 + 0.666667 NA Intergenic L1MEd|LINE|L1 595984 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 121.333-61 chr22 47118984 47119171 + 0.666667 NA intron (NM_001284305, intron 12 of 12) AluSc5|SINE|Alu -203035 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 137.667-81 chr5 62996097 62996561 + 0.666667 NA Intergenic L1MC1|LINE|L1 417510 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 226.667-5 chr1 190092518 190092991 + 0.666667 NA Intergenic L1M5|LINE|L1 383256 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 180.333-34 chr2 183336785 183337247 + 0.666667 NA Intergenic L1MA7|LINE|L1 212573 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 161-12 chr11 69681719 69682103 + 0.666667 NA Intergenic Intergenic -6558 NM_153451 220064 Hs.667996 NM_153451 ENSG00000149716 LTO1 CIAB1|ORAOV1|TAOS1 LTO1 maturation factor of ABCE1 protein-coding 131.667-121 chr7 93089230 93089556 + 0.666667 NA Intergenic L1M1|LINE|L1 28586 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 397.833-2 chr17 26882251 26883158 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 206537 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 219-30 chr8 88473715 88474053 + 0.666667 NA Intergenic L1PA11|LINE|L1 -146401 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 146.833-45 chr3 177795997 177796478 + 0.666667 NA Intergenic Intergenic -20628 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 138.5-23 chr14 29138260 29138530 + 0.666667 NA Intergenic L1MEc|LINE|L1 -352608 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 152.667-50 chr22 45741063 45741457 + 0.666667 NA intron (NM_013236, intron 9 of 11) MLT1G3|LTR|ERVL-MaLR -19264 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 160.333-50 chr5 18705597 18705922 + 0.666667 NA Intergenic Intergenic 898485 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 121 chr1 30553524 30554042 + 0.666667 NA Intergenic Intergenic -164989 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 162.333-63 chr6 45918830 45919120 + 0.666667 NA non-coding (NR_045674, exon 3 of 5) non-coding (NR_045674, exon 3 of 5) 18622 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 232-7 chr12 25509702 25510294 + 0.666667 NA intron (NM_152590, intron 7 of 8) MLT1C|LTR|ERVL-MaLR 43285 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 129.333-95 chr8 47727553 47727808 + 0.666667 NA intron (NM_001352957, intron 15 of 15) intron (NM_001352957, intron 15 of 15) 10484 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT enhancer binding protein delta protein-coding 120.333-41 chr14 44616281 44616643 + 0.666667 NA Intergenic Intergenic 109053 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 172.333-54 chr3 177596241 177596639 + 0.666667 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 154519 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 124-52 chr2 121864089 121864418 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR 108602 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 151.667-19 chr12 92512546 92512860 + 0.666667 NA Intergenic Intergenic 46024 NR_144532 100507616 Hs.339918 NR_144532 LINC02397 - long intergenic non-protein coding RNA 2397 ncRNA 130.5-76 chr8 128430557 128430925 + 0.666667 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 133938 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 188-51 chr5 134651302 134651620 + 0.666667 NA intron (NM_021982, intron 1 of 22) AluSz|SINE|Alu 2676 NM_021982 10802 Hs.595540 NM_021982 ENSG00000113615 SEC24A - SEC24 homolog A, COPII coat complex component protein-coding 135.833-32 chr2 54550013 54550266 + 0.666667 NA intron (NM_003128, intron 2 of 35) intron (NM_003128, intron 2 of 35) -8255 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 146.333-70 chr3 180744944 180745269 + 0.666667 NA intron (NR_109986, intron 7 of 13) intron (NR_109986, intron 7 of 13) -65617 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 194.5-15 chr2 55217679 55218027 + 0.666667 NA exon (NM_001353785, exon 2 of 8) exon (NM_001353785, exon 2 of 8) -14050 NM_001135592 6233 Hs.311640 NM_002954 ENSG00000143947 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 138-31 chr14 51946146 51946421 + 0.666667 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) -27712 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 200.667-35 chr22 24028346 24028891 + 0.666667 NA intron (NM_001199281, intron 1 of 36) intron (NM_001199281, intron 1 of 36) 17248 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 147.833-4 chr10 6795778 6796040 + 0.666667 NA intron (NR_038291, intron 2 of 4) intron (NR_038291, intron 2 of 4) 16311 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 149-68 chr5 115022008 115022559 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie 147625 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 129.667-4 chr1 246746511 246746758 + 0.666667 NA intron (NM_016002, intron 5 of 11) AluSz|SINE|Alu 22225 NM_016002 51097 Hs.498397 NM_016002 ENSG00000143653 SCCPDH CGI-49|NET11 saccharopine dehydrogenase (putative) protein-coding 164.833-5 chr1 225644113 225644486 + 0.666667 NA intron (NM_001008493, intron 1 of 14) intron (NM_001008493, intron 1 of 14) 8824 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 175-40 chr3 121502785 121503219 + 0.666667 NA intron (NM_199420, intron 12 of 29) Tigger3a|DNA|TcMar-Tigger 42986 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 133.833-77 chr8 87688750 87688950 + 0.666667 NA Intergenic Intergenic 185165 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 183.5-13 chr15 86482518 86483055 + 0.666667 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -165818 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 222.333 chr1 72060250 72060893 + 0.666667 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 221968 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 122.167-24 chr15 60138869 60139094 + 0.666667 NA Intergenic Intergenic 134670 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 162-62 chr6 101113172 101113654 + 0.666667 NA Intergenic L2a|LINE|L2 -232041 NM_022091 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 202.333-5 chr10 61904361 61904716 + 0.666667 NA intron (NM_032199, intron 2 of 9) intron (NM_032199, intron 2 of 9) 2839 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 134.333-14 chr10 57422386 57422700 + 0.666667 NA Intergenic Intergenic -117984 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 243-5 chr10 89749287 89749692 + 0.666667 NA intron (NM_016195, intron 23 of 32) L1MB7|LINE|L1 47899 NM_001284259 9585 Hs.240 NM_016195 ENSG00000138182 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 128.333-19 chr10 90756732 90757098 + 0.666667 NA intron (NM_019860, intron 1 of 2) intron (NM_019860, intron 1 of 2) 101124 NM_000872 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 119-98 chr8 105695440 105695710 + 0.666667 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 364928 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 121.833-16 chr14 42612245 42612618 + 0.666667 NA Intergenic Intergenic 1005575 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 175.333-35 chr3 17026354 17026784 + 0.666667 NA intron (NM_015184, intron 3 of 5) intron (NM_015184, intron 3 of 5) 93373 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 181.833-49 chr8 48042695 48043031 + 0.666667 NA intron (NM_003350, intron 1 of 3) intron (NM_003350, intron 1 of 3) 34432 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 152.833-62 chr6 147982611 147982991 + 0.666667 NA Intergenic Intergenic -289527 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 261.333-26 chr7 92202814 92203255 + 0.666667 NA TTS (NR_031616) TTS (NR_031616) 1064 NR_031616 100302218 NR_031616 ENSG00000221520 MIR1285-1 MIRN1285-1|hsa-mir-1285-1 microRNA 1285-1 ncRNA 134-55 chr18 68834110 68834397 + 0.666667 NA intron (NM_024781, intron 1 of 7) intron (NM_024781, intron 1 of 7) 36173 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 148.667-39 chr2 180959755 180960097 + 0.666667 NA Intergenic L2c|LINE|L2 -20459 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 126.5-41 chr2 71318067 71318403 + 0.666667 NA Intergenic MER9a1|LTR|ERVK -13520 NM_001014972 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 125.333-74 chr22 32077467 32077847 + 0.666667 NA intron (NM_000343, intron 5 of 14) L1ME3Cz|LINE|L1 18487 NM_001256314 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 118.333-43 chr16 63384718 63384968 + 0.666667 NA Intergenic MIRb|SINE|MIR -1348405 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 188.333 chr1 43671540 43671902 + 0.666667 NA exon (NM_014663, exon 11 of 22) exon (NM_014663, exon 11 of 22) 21572 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 156.833-18 chr13 65523064 65523358 + 0.666667 NA Intergenic Tigger17c|DNA|TcMar-Tigger -342836 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 131-48 chr4 176951946 176952253 + 0.666667 NA Intergenic L1MB1|LINE|L1 76397 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 116.667-39 chr15 62687225 62687513 + 0.666667 NA intron (NM_015059, intron 9 of 55) MIRb|SINE|MIR 40058 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 157.333-53 chr4 99931118 99931528 + 0.666667 NA intron (NM_001031723, intron 1 of 7) L1MC5|LINE|L1 15295 NM_001278311 79982 Hs.577426 NM_024920 ENSG00000164031 DNAJB14 EGNR9427|PRO34683 DnaJ heat shock protein family (Hsp40) member B14 protein-coding 128.667-49 chr16 76697103 76697303 + 0.666667 NA Intergenic MER70A|LTR|ERVL 62205 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 189.334-4 chr8 57476464 57476999 + 0.666667 NA Intergenic L1M4|LINE|L1 132944 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 239.5-5 chr1 240569097 240569952 + 0.666667 NA intron (NM_022469, intron 1 of 1) L1MEc|LINE|L1 42631 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 184-22 chr18 44754528 44754911 + 0.666667 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 73831 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 161.667-24 chr11 103771780 103772216 + 0.666667 NA Intergenic Intergenic -77908 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 171.167-64 chrX 73909927 73910201 + 0.666667 NA Intergenic L1PA17|LINE|L1 -34260 NR_024582 554203 Hs.648316 NR_024582 ENSG00000225470 JPX DCBALD06|ENOX|LINC00183|NCRNA00183 JPX transcript, XIST activator ncRNA 137.333-68 chr4 36532855 36533288 + 0.666667 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) -106643 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 246.333-11 chr16 26655413 26655955 + 0.666667 NA Intergenic L1MD2|LINE|L1 -411243 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 229.833-12 chr21 24252137 24252513 + 0.666667 NA Intergenic L1MA3|LINE|L1 69052 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 190.333-18 chr14 95848957 95849336 + 0.666667 NA Intergenic L1MA1|LINE|L1 -27246 NR_132399 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 123.334-2 chr1 49530513 49531088 + 0.666667 NA intron (NR_136623, intron 2 of 12) MIR|SINE|MIR -58715 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 189-42 chr5 129812553 129812888 + 0.666667 NA Intergenic FordPrefect|DNA|hAT-Tip100 64626 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 170.667-4 chr10 54990295 54990716 + 0.666667 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -189214 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 133.833-20 chr11 100588476 100588715 + 0.666667 NA Intergenic MamRep1527|LTR|LTR -98693 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 121-56 chr21 19870853 19871200 + 0.666667 NA Intergenic L1MB7|LINE|L1 28729 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 232.667-10 chr15 39208233 39208639 + 0.666667 NA Intergenic Intergenic -42233 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 147.333-97 chr9 72249053 72249521 + 0.666667 NA 3' UTR (NM_001242507, exon 14 of 14) 3' UTR (NM_001242507, exon 14 of 14) -56149 NR_110952 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 145.667-4 chr1 89790116 89790707 + 0.666667 NA Intergenic Intergenic -30621 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 199-20 chr4 38090475 38091069 + 0.666667 NA intron (NM_001253912, intron 15 of 20) intron (NM_001253912, intron 15 of 20) -19409 NM_001253913 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 123.333-93 chr6 74141448 74141791 + 0.666667 NA intron (NR_110856, intron 1 of 3) AluY|SINE|Alu 72168 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 191.667-10 chr11 10572278 10572809 + 0.666667 NA TTS (NM_001206881) TTS (NM_001206881) -3878 NM_006691 10894 Hs.655332 NM_006691 ENSG00000133800 LYVE1 CRSBP-1|HAR|LYVE-1|XLKD1 lymphatic vessel endothelial hyaluronan receptor 1 protein-coding 132.833-26 chr18 8664324 8664729 + 0.666667 NA Intergenic L1MB8|LINE|L1 43095 NR_120598 100287082 Hs.439434 NR_120598 ENSG00000265962 GACAT2 MTCL1-AS1|MTCL1AS1 gastric cancer associated transcript 2 ncRNA 146-41 chr2 185563621 185564087 + 0.666667 NA Intergenic L1MA6|LINE|L1 174865 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 166.333-34 chr2 56560785 56561079 + 0.666667 NA Intergenic HAL1|LINE|L1 -375162 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 119-68 chr3 195562894 195563197 + 0.666667 NA Intergenic AluSz6|SINE|Alu -19720 NM_001291505 5504 Hs.535731 NM_006241 ENSG00000184203 PPP1R2 IPP-2|IPP2|PPP1R2A protein phosphatase 1 regulatory inhibitor subunit 2 protein-coding 142.667-58 chr2 240969907 240970169 + 0.666667 NA intron (NM_001351305, intron 27 of 31) L1M5|LINE|L1 -2587 NR_033841 200772 Hs.647893 NR_033841 ENSG00000233392 LOC200772 - uncharacterized LOC200772 ncRNA 129.333-87 chr7 29199511 29199911 + 0.666667 NA non-coding (NR_120522, exon 3 of 3) non-coding (NR_120522, exon 3 of 3) 1970 NM_001293072 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 205-4 chr12 62025640 62026243 + 0.666667 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 166898 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 224.833-12 chr4 97157445 97157802 + 0.666667 NA Intergenic Intergenic -209303 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 137.667-18 chr12 4638411 4638852 + 0.666667 NA intron (NM_001278309, intron 3 of 5) intron (NM_001278309, intron 3 of 5) 10416 NM_006422 10566 Hs.98397 NM_006422 ENSG00000111254 AKAP3 AKAP 110|AKAP110|CT82|FSP95|HEL159|PRKA3|SOB1 A-kinase anchoring protein 3 protein-coding 116.667-103 chr7 156762259 156762571 + 0.666667 NA intron (NR_146958, intron 7 of 14) intron (NR_146958, intron 7 of 14) 118614 NM_001308274 140545 Hs.446194 NM_030936 ENSG00000105982 RNF32 FKSG33|HSD15|LMBR2 ring finger protein 32 protein-coding 129.167-32 chr17 32567881 32568259 + 0.666667 NA intron (NM_015194, intron 21 of 21) intron (NM_015194, intron 21 of 21) 81077 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 114.667-121 chr7 135928565 135928793 + 0.666667 NA 5' UTR (NM_001128619, exon 4 of 4) 5' UTR (NM_001128619, exon 4 of 4) 48680 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 291.5-9 chr19 29978218 29978913 + 0.666667 NA intron (NM_001252641, intron 2 of 10) intron (NM_001252641, intron 2 of 10) 36326 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 125-70 chr6 45647366 45647620 + 0.666667 NA Intergenic Intergenic 225218 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 163.5-29 chr19 9628260 9628769 + 0.666667 NA intron (NR_122038, intron 2 of 3) HERVIP10B3-int|LTR|ERV1 7032 NR_122038 284385 Hs.651747 NM_001242812 ENSG00000267106 ZNF561-AS1 C19orf82 ZNF561 antisense RNA 1 (head to head) ncRNA 144.5-61 chr3 148798383 148798803 + 0.666667 NA Intergenic Intergenic -29218 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 172-44 chr3 149298930 149299240 + 0.666667 NA Intergenic Tigger16b|DNA|TcMar-Tigger 34353 NM_001184723 116441 Hs.22026 NM_138786 ENSG00000163762 TM4SF18 L6D transmembrane 4 L six family member 18 protein-coding 120.333-79 chr3 173219301 173219602 + 0.666667 NA Intergenic L1M3f|LINE|L1 -78216 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 203.5-19 chr2 58593422 58593844 + 0.666667 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 72880 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 159.667-40 chr16 53430716 53430999 + 0.666667 NA Intergenic MER41C|LTR|ERV1 -3614 NM_001323608 5934 Hs.513609 NM_005611 ENSG00000103479 RBL2 P130|Rb2 RB transcriptional corepressor like 2 protein-coding 153.5-29 chr19 27957707 27957989 + 0.666667 NA intron (NR_146734, intron 3 of 7) intron (NR_146734, intron 3 of 7) -163908 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 191.5-22 chr2 47615026 47615511 + 0.666667 NA Intergenic MIRb|SINE|MIR -44937 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 149.333-66 chr3 170199106 170199493 + 0.666667 NA Intergenic L1MB7|LINE|L1 -17566 NM_001308116 80012 Hs.529592 NM_024947 ENSG00000173889 PHC3 EDR3|HPH3 polyhomeotic homolog 3 protein-coding 178.167-8 chr11 66065265 66065761 + 0.666667 NA intron (NM_006842, intron 19 of 21) L1MEc|LINE|L1 -4759 NM_018026 55690 Hs.644326 NM_018026 ENSG00000175115 PACS1 MRD17|SHMS phosphofurin acidic cluster sorting protein 1 protein-coding 228.667-37 chr8 137389191 137389685 + 0.666667 NA Intergenic Tigger3a|DNA|TcMar-Tigger 24150 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 154.5-44 chr21 26571237 26571513 + 0.666667 NA intron (NR_135472, intron 1 of 4) intron (NR_135472, intron 1 of 4) 1911 NM_001320768 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 207.333-26 chr2 66726424 66726806 + 0.666667 NA Intergenic MLT1K|LTR|ERVL-MaLR -23388 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 118.5-26 chr13 72246457 72246865 + 0.666667 NA Intergenic Intergenic -379457 NM_001366712 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 143.167-19 chr14 83407809 83408023 + 0.666667 NA Intergenic AluSq2|SINE|Alu 765284 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 186-35 chr4 64448261 64448714 + 0.666667 NA Intergenic Intergenic -39027 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 176.5-39 chr22 25679253 25679573 + 0.666667 NA intron (NM_001362778, intron 8 of 19) intron (NM_001362778, intron 8 of 19) -62775 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 187.333-3 chr1 173236876 173237234 + 0.666667 NA non-coding (NR_037845, exon 3 of 3) non-coding (NR_037845, exon 3 of 3) -29724 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 159.667 chr1 30677254 30677598 + 0.666667 NA Intergenic L2a|LINE|L2 -41346 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 137-31 chr14 22325853 22326195 + 0.666667 NA Intergenic Intergenic 106729 NR_148363 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 125.667-31 chr14 54129150 54129407 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger -172387 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 206.833-27 chr8 9158667 9159215 + 0.666667 NA Intergenic Intergenic -7402 NM_001201329 79660 Hs.458513 NM_024607 ENSG00000173281 PPP1R3B GL|PPP1R4|PTG protein phosphatase 1 regulatory subunit 3B protein-coding 158.5-57 chr4 56370055 56370462 + 0.666667 NA intron (NM_001286672, intron 5 of 10) AluSz6|SINE|Alu 17233 NM_181806 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 134.667-103 chr7 117911017 117911478 + 0.666667 NA Intergenic L1MA6|LINE|L1 -37806 NM_001363351 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 155.667-24 chr13 99283864 99284243 + 0.666667 NA intron (NR_026644, intron 4 of 8) intron (NR_026644, intron 4 of 8) 23346 NM_004951 1880 Hs.784 NM_004951 ENSG00000169508 GPR183 EBI2|hEBI2 G protein-coupled receptor 183 protein-coding 125.333-9 chr1 192189475 192189831 + 0.666667 NA Intergenic Intergenic 31191 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 129-54 chr3 30152130 30152375 + 0.666667 NA Intergenic Intergenic -218096 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 123.833-76 chr9 78920688 78920950 + 0.666667 NA Intergenic MER47A|DNA|TcMar-Tigger 224847 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 217-17 chr2 190275409 190275805 + 0.666667 NA intron (NM_198047, intron 6 of 12) HSMAR2|DNA|TcMar-Mariner 44219 NM_014362 26275 Hs.656685 NM_014362 ENSG00000198130 HIBCH HIBYLCOAH 3-hydroxyisobutyryl-CoA hydrolase protein-coding 170.833-45 chr7 7272804 7273114 + 0.666667 NA intron (NR_108073, intron 3 of 3) intron (NR_108073, intron 3 of 3) 17805 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 183.833-44 chr8 137022689 137023028 + 0.666667 NA Intergenic Intergenic 390730 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 122.667-56 chr21 32127243 32127461 + 0.666667 NA Intergenic Intergenic -41057 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 230.833 chr1 92126944 92127377 + 0.666667 NA intron (NM_183242, intron 4 of 8) intron (NM_183242, intron 4 of 8) -41764 NM_015237 23285 Hs.21554 NM_015237 ENSG00000189195 KIAA1107 - KIAA1107 protein-coding 127-28 chr14 21439991 21440371 + 0.666667 NA intron (NM_001170629, intron 1 of 37) intron (NM_001170629, intron 1 of 37) -2906 NM_020920 57680 Hs.530698 NM_020920 ENSG00000100888 CHD8 AUTS18|HELSNF1 chromodomain helicase DNA binding protein 8 protein-coding 140.5-6 chr1 190266608 190266847 + 0.666667 NA intron (NM_001317188, intron 2 of 6) intron (NM_001317188, intron 2 of 6) 209283 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 122-9 chr10 51423930 51424120 + 0.666667 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 124452 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 154.833-54 chr7 83655375 83655657 + 0.666667 NA Intergenic Intergenic -6377 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 182-28 chr2 150399373 150399762 + 0.666667 NA Intergenic L1ME1|LINE|L1 88128 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 160.833-6 chr1 247247592 247247969 + 0.666667 NA Intergenic L1MA2|LINE|L1 -8292 NM_173858 317705 Hs.553686 NM_173858 ENSG00000197617 VN1R5 V1RL5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding 182.5-40 chr8 65141910 65142616 + 0.666667 NA Intergenic Intergenic 38077 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 121-53 chr2 220407254 220407488 + 0.666667 NA Intergenic L1PREC2|LINE|L1 -500806 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 150.167-67 chr8 121540175 121540498 + 0.666667 NA Intergenic L1M4|LINE|L1 -99010 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 143-11 chr10 103190351 103190730 + 0.666667 NA intron (NM_001351187, intron 1 of 21) MIRb|SINE|MIR 2766 NM_001351185 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 298-10 chr6 50460963 50461464 + 0.666667 NA Intergenic A-rich|Low_complexity|Low_complexity -252331 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 128.167-63 chr5 20276613 20277024 + 0.666667 NA intron (NM_001349556, intron 1 of 13) L1MA3|LINE|L1 -28733 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 173.333-35 chr20 51890258 51890680 + 0.666667 NA Intergenic AluSc|SINE|Alu -27556 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 171.834-2 chr12 52932286 52932921 + 0.666667 NA intron (NM_001256293, intron 1 of 8) L1MD|LINE|L1 -6134 NM_001256282 3856 Hs.533782 NM_002273 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 166-23 chr14 50469894 50470423 + 0.666667 NA intron (NM_198794, intron 9 of 31) intron (NM_198794, intron 9 of 31) 62411 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 207.833-26 chr4 137936264 137936753 + 0.666667 NA Intergenic L1ME3F|LINE|L1 -152506 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 175.833-20 chr2 66021322 66021628 + 0.666667 NA Intergenic Intergenic 336853 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 159-44 chr2 156578321 156578728 + 0.666667 NA intron (NM_000408, intron 13 of 16) L1ME1|LINE|L1 142145 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 146-55 chr4 144832083 144832441 + 0.666667 NA Intergenic L1MEc|LINE|L1 186106 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 263.833-6 chr18 74964695 74965173 + 0.666667 NA intron (NM_017757, intron 7 of 7) intron (NM_017757, intron 7 of 7) 240579 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 134.833-64 chr8 79585569 79585840 + 0.666667 NA Intergenic Intergenic -25413 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 161-30 chr2 98243527 98243794 + 0.666667 NA intron (NM_001345864, intron 13 of 21) intron (NM_001345864, intron 13 of 21) 94127 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 278.5-7 chr2 129476564 129476999 + 0.666667 NA Intergenic L1MC3|LINE|L1 -202890 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 124.833-27 chr16 78839258 78839517 + 0.666667 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 739733 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 160.667-16 chr10 96758302 96758833 + 0.666667 NA Intergenic Intergenic 8301 NR_026712 728658 Hs.645344 NR_026712 ENSG00000236552 RPL13AP5 RPL13A_8_1086|bA196N24.2 ribosomal protein L13a pseudogene 5 pseudo 234.5-17 chr2 213746832 213747536 + 0.666667 NA intron (NR_047660, intron 9 of 14) Tigger3b|DNA|TcMar-Tigger -10883 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 188-44 chr5 24823792 24824144 + 0.666667 NA Intergenic L1PA16|LINE|L1 16615 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 124.333-31 chr14 67855730 67856013 + 0.666667 NA intron (NM_133509, intron 4 of 10) intron (NM_133509, intron 4 of 10) 32279 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 184.5-9 chr11 23015071 23015577 + 0.666667 NA Intergenic Intergenic -154850 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 117.833-6 chr10 86343664 86344046 + 0.666667 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) 22940 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 132-21 chr14 26023069 26023370 + 0.666667 NA Intergenic L1ME3A|LINE|L1 530211 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 224-2 chr1 228791591 228792261 + 0.666667 NA Intergenic Intergenic 56447 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 138.667-26 chr13 109777539 109777922 + 0.666667 NA intron (NM_003749, intron 1 of 1) intron (NM_003749, intron 1 of 1) 8853 NM_003749 8660 Hs.442344 NM_003749 ENSG00000185950 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 141.667-38 chr18 4586809 4587053 + 0.666667 NA Intergenic L1MC4|LINE|L1 -131624 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 153-34 chr22 28183924 28184266 + 0.666667 NA intron (NM_001145418, intron 5 of 22) MIR|SINE|MIR -263483 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 205.333-54 chr6 146559442 146559810 + 0.666667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 15793 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 176.5-36 chr20 32389190 32389539 + 0.666667 NA intron (NM_015338, intron 3 of 11) L1ME3D|LINE|L1 30299 NM_001363734 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 185-43 chr5 169499441 169499986 + 0.666667 NA Intergenic L1PA15|LINE|L1 -84060 NM_001329639 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 125-99 chr8 123348365 123348726 + 0.666667 NA promoter-TSS (NR_030382) promoter-TSS (NR_030382) -415 NR_030382 693130 NR_030382 ENSG00000283172 MIR548D1 MIRN548D1 microRNA 548d-1 ncRNA 226.333-40 chr9 103415424 103415950 + 0.666667 NA Intergenic L1MB4|LINE|L1 -90654 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 207.5-20 chr2 203435833 203436269 + 0.666667 NA 3' UTR (NM_213589, exon 14 of 14) 3' UTR (NM_213589, exon 14 of 14) 69167 NM_001282927 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 145.667-3 chr1 87837281 87837636 + 0.666667 NA Intergenic Intergenic -465803 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 256.667-8 chr13 20003487 20004173 + 0.666667 NA intron (NM_197968, intron 4 of 24) AluSx1|SINE|Alu 44016 NR_148365 7750 Hs.507433 NM_003453 ENSG00000121741 ZMYM2 FIM|MYM|RAMP|SCLL|ZNF198 zinc finger MYM-type containing 2 protein-coding 193.333-15 chr12 75082277 75082741 + 0.666667 NA intron (NM_001260499, intron 2 of 3) intron (NM_001260499, intron 2 of 3) 127239 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 166.167-26 chr2 190113220 190113525 + 0.666667 NA Intergenic Intergenic -24405 NM_001042521 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 128.167-71 chr5 130806174 130806552 + 0.666667 NA Intergenic THE1D-int|LTR|ERVL-MaLR 358893 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 127.667-32 chr17 55180793 55181152 + 0.666667 NA Intergenic Intergenic -83988 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 206.5-13 chr18 24284813 24285145 + 0.666667 NA intron (NM_001242508, intron 2 of 15) AluJo|SINE|Alu -12747 NM_018030 114876 Hs.370725 NM_018030 ENSG00000141447 OSBPL1A ORP-1|ORP1|OSBPL1B oxysterol binding protein like 1A protein-coding 167.167-29 chr16 64061565 64062108 + 0.666667 NA Intergenic Intergenic 1060227 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 157.167-57 chr7 51907497 51908055 + 0.666667 NA Intergenic MIR3|SINE|MIR -514520 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 126-25 chr13 60585054 60585427 + 0.666667 NA Intergenic Intergenic -87715 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 223.333-15 chr19 57609789 57610298 + 0.666667 NA TTS (NM_001321981) TTS (NM_001321981) -4199 NM_003435 7693 Hs.469694 NM_003435 ENSG00000213762 ZNF134 pHZ-15 zinc finger protein 134 protein-coding 172.167-4 chr1 158208856 158209312 + 0.666667 NA Intergenic L1MEc|LINE|L1 29137 NM_001766 912 Hs.1799 NM_001766 ENSG00000158473 CD1D CD1A|R3|R3G1 CD1d molecule protein-coding 213.333-7 chr10 125659814 125660338 + 0.666667 NA intron (NM_001128202, intron 3 of 3) MER33|DNA|hAT-Charlie 23087 NM_001318133 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 221.333-28 chr8 34047942 34048312 + 0.666667 NA Intergenic L1PA16|LINE|L1 -448021 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 135.333-79 chr8 29597292 29597629 + 0.666667 NA Intergenic Intergenic 150649 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 163.333-27 chr14 73371374 73371940 + 0.666667 NA intron (NM_001005743, intron 2 of 12) MLT1A1|LTR|ERVL-MaLR 86923 NM_001005745 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 172.833-10 chr13 87331714 87332039 + 0.666667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 286864 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 144-12 chr11 115470462 115471036 + 0.666667 NA intron (NM_001098517, intron 1 of 8) MIRb|SINE|MIR 33666 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 201.667-43 chr7 104718428 104718864 + 0.666667 NA intron (NM_199000, intron 1 of 2) MADE1|DNA|TcMar-Mariner 85446 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 167.833-11 chr13 38218576 38218863 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -75487 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 169.333-71 chr8 101308678 101309094 + 0.666667 NA Intergenic AluJb|SINE|Alu -60007 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 149.333-22 chr12 79794800 79795322 + 0.666667 NA intron (NM_001244990, intron 19 of 24) L1ME3A|LINE|L1 -103964 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 132-26 chr14 64471775 64472017 + 0.666667 NA 3' UTR (NM_004857, exon 2 of 2) 3' UTR (NM_004857, exon 2 of 2) 6397 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 140-40 chr2 133919371 133919771 + 0.666667 NA Intergenic Intergenic -200364 NM_001371457 119.333-77 chr5 3687162 3687425 + 0.666667 NA Intergenic MLT1A|LTR|ERVL-MaLR 91461 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 194.667-45 chr3 176992982 176993467 + 0.666667 NA Intergenic Intergenic -176223 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 141-66 chr4 82950457 82950979 + 0.666667 NA intron (NM_001288996, intron 2 of 10) intron (NM_001288996, intron 2 of 10) -49802 NR_034076 100499177 Hs.728916 NR_034075 ENSG00000251022 THAP9-AS1 - THAP9 antisense RNA 1 ncRNA 152.833-69 chr8 54437223 54437538 + 0.666667 NA Intergenic AluSx1|SINE|Alu -20555 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 134.667-3 chr1 170336629 170336940 + 0.666667 NA Intergenic MIR3|SINE|MIR -52576 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 218.333-3 chr10 73987611 73988176 + 0.666667 NA Intergenic AluSz|SINE|Alu -10221 NM_014000 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 115.167-18 chr10 75507398 75507662 + 0.666667 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) -44928 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 156.5-66 chr5 15515028 15515315 + 0.666667 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 13733 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 143.333-92 chr8 126169830 126170177 + 0.666667 NA Intergenic Intergenic -155492 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 117-76 chr4 39713486 39713767 + 0.666667 NA intron (NM_001111113, intron 1 of 4) L1MB3|LINE|L1 15490 NM_005339 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 208.833-7 chr11 27985331 27985917 + 0.666667 NA Intergenic Intergenic -71191 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 168-36 chr22 45696283 45696662 + 0.666667 NA intron (NM_013236, intron 3 of 11) intron (NM_013236, intron 3 of 11) 24638 NM_013236 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 222.833-13 chr20 4518129 4518522 + 0.666667 NA Intergenic MER5C|DNA|hAT-Charlie -168131 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 362.5 chr10 93726968 93727700 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR -24375 NM_001347714 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 231-24 chr5 35448994 35449842 + 0.666667 NA Intergenic L1PB1|LINE|L1 -168445 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 128.333-78 chr3 34757602 34757900 + 0.666667 NA Intergenic Intergenic 636272 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 208-8 chr14 22480701 22481243 + 0.666667 NA intron (NR_148361, intron 2 of 4) intron (NR_148361, intron 2 of 4) 1987 NR_148361 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 115.833-38 chr2 184965883 184966135 + 0.666667 NA Intergenic Intergenic 201063 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 210.167-28 chr9 74169589 74170176 + 0.666667 NA Intergenic Intergenic -201649 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 204-20 chr2 161064771 161065116 + 0.666667 NA Intergenic L1ME4b|LINE|L1 -72012 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 140.333-41 chr20 20876662 20877061 + 0.666667 NA Intergenic L5|LINE|RTE-X -164217 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 136-2 chr1 95175321 95175651 + 0.666667 NA intron (NM_001199691, intron 6 of 7) L1MB2|LINE|L1 57563 NM_001199691 100527978 Hs.483512 NM_001199691 ENSG00000271092 TLCD4-RWDD3 TMEM56-RWDD3 TLCD4-RWDD3 readthrough protein-coding 150.333-45 chr15 96453404 96453894 + 0.666667 NA Intergenic Intergenic 119884 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 184.333-46 chr4 126693618 126694059 + 0.666667 NA Intergenic Intergenic -939119 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 137.333-104 chr8 133097415 133097676 + 0.666667 NA intron (NM_003235, intron 43 of 47) L1ME3G|LINE|L1 5057 NM_001045556 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 132-71 chr5 46009979 46010446 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr -313832 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 196.333-22 chr2 155236344 155236800 + 0.666667 NA Intergenic Intergenic 537877 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 150.333 chr1 23026819 23027148 + 0.666667 NA intron (NM_015013, intron 1 of 18) intron (NM_015013, intron 1 of 18) 7515 NM_015013 23028 Hs.591518 NM_015013 ENSG00000004487 KDM1A AOF2|BHC110|CPRF|KDM1|LSD1 lysine demethylase 1A protein-coding 215-19 chr2 121724775 121725400 + 0.666667 NA intron (NR_037857, intron 3 of 3) intron (NR_037857, intron 3 of 3) 11788 NM_032390 84365 Hs.367842 NM_032390 ENSG00000155438 NIFK MKI67IP|Nopp34 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 179-2 chr1 27481742 27482216 + 0.666667 NA intron (NM_006990, intron 1 of 8) intron (NM_006990, intron 1 of 8) 8188 NM_001201404 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WASP family member 2 protein-coding 192.333-24 chr2 179418517 179418976 + 0.666667 NA Intergenic L1MA8|LINE|L1 143842 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 120.167-78 chr8 82731576 82731985 + 0.666667 NA Intergenic Intergenic -180324 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 140.833-52 chr6 119012971 119013453 + 0.666667 NA intron (NM_024581, intron 5 of 17) intron (NM_024581, intron 5 of 17) 55931 NR_030315 693128 NR_030315 ENSG00000207982 MIR548B MIRN548B microRNA 548b ncRNA 182.333-67 chr8 9304172 9304551 + 0.666667 NA Intergenic Intergenic -20690 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 137.5-88 chr7 32117031 32117350 + 0.666667 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -45754 NM_001322056 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 129.333-56 chr20 60497109 60497334 + 0.666667 NA Intergenic Intergenic 19110 NR_039758 100616362 NR_039758 ENSG00000266140 MIR4533 - microRNA 4533 ncRNA 166-14 chr11 25750719 25751128 + 0.666667 NA Intergenic L1MCb|LINE|L1 -438200 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 245-2 chr1 228243137 228243556 + 0.666667 NA exon (NM_001098623, exon 10 of 105) exon (NM_001098623, exon 10 of 105) -29682 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 OBSCN-AS1 C1orf145 OBSCN antisense RNA 1 ncRNA 168-45 chr4 33053230 33053633 + 0.666667 NA Intergenic MER67A|LTR|ERV1 702393 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 192.833-11 chr13 36340816 36341256 + 0.666667 NA intron (NM_001142296, intron 1 of 9) HAL1|LINE|L1 5358 NM_001142296 23111 Hs.440414 NM_015087 ENSG00000133104 SPART SPG20|TAHCCP1 spartin protein-coding 148.167-37 chr2 67294330 67294741 + 0.666667 NA Intergenic L3|LINE|CR1 -79216 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 138.333 chr1 7915811 7916120 + 0.666667 NA TTS (NM_001561) TTS (NM_001561) 27200 NM_001561 3604 Hs.86447 NM_001561 ENSG00000049249 TNFRSF9 4-1BB|CD137|CDw137|ILA TNF receptor superfamily member 9 protein-coding 166.167-42 chr4 159795678 159796187 + 0.666667 NA Intergenic MIRb|SINE|MIR -18148 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 185-19 chr15 68241948 68242383 + 0.666667 NA Intergenic L1MA4|LINE|L1 -12437 NM_017882 54982 Hs.584921 NM_017882 ENSG00000128973 CLN6 CLN4A|HsT18960|nclf CLN6 transmembrane ER protein protein-coding 146.667-82 chr7 3046712 3047072 + 0.666667 NA Intergenic L1ME3A|LINE|L1 -3025 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 162.333-24 chr17 49542347 49542687 + 0.666667 NA intron (NR_103773, intron 1 of 2) L1MC3|LINE|L1 31547 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 154-90 chr9 29682523 29682804 + 0.666667 NA Intergenic L1PA5|LINE|L1 -469062 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 247.167-14 chr3 43716307 43716677 + 0.666667 NA intron (NM_001365650, intron 5 of 5) intron (NM_001365650, intron 5 of 5) -24898 NM_001346469 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 262-15 chr3 50433287 50433753 + 0.666667 NA intron (NM_001291101, intron 3 of 37) intron (NM_001291101, intron 3 of 37) 68157 NR_111914 11068 Hs.149443 NM_007022 ENSG00000114395 CYB561D2 101F6|TSP10|XXcos-LUCA11.4 cytochrome b561 family member D2 protein-coding 188-33 chr2 231751549 231752023 + 0.666667 NA intron (NM_002601, intron 1 of 4) L1MC3|LINE|L1 29496 NM_002601 5147 Hs.516808 NM_002601 ENSG00000156973 PDE6D JBTS22|PDED phosphodiesterase 6D protein-coding 127.5-13 chr10 131321885 131322124 + 0.666667 NA Intergenic Intergenic -10283 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 183-49 chr6 52703155 52703614 + 0.666667 NA Intergenic Intergenic 32271 NM_014051 28978 Hs.94896 NM_014051 ENSG00000096092 TMEM14A C6orf73|PTD011 transmembrane protein 14A protein-coding 141.333-96 chr8 118501436 118501795 + 0.666667 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -119386 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 121.5-91 chr6 68483056 68483292 + 0.666667 NA Intergenic Intergenic 151150 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 135.5-41 chr2 20422437 20422721 + 0.666667 NA Intergenic Intergenic -24495 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 137.167-51 chr5 66022506 66022763 + 0.666667 NA intron (NM_001253697, intron 8 of 25) intron (NM_001253697, intron 8 of 25) -77061 NR_028474 100303749 Hs.608060 NR_028474 LOC100303749 - LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo 185.5-47 chr7 22017696 22018051 + 0.666667 NA Intergenic Intergenic -71974 NM_001127371 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 133-63 chr4 45885332 45885817 + 0.666667 NA Intergenic L1PA15|LINE|L1 238480 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 120-11 chr10 20733561 20733896 + 0.666667 NA Intergenic Intergenic 163874 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 247.667-16 chr21 26551910 26552574 + 0.666667 NA intron (NR_135515, intron 3 of 3) Tigger1|DNA|TcMar-Tigger 21044 NM_001320768 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 121.833-69 chr6 56786713 56787107 + 0.666667 NA intron (NM_001144770, intron 2 of 94) intron (NM_001144770, intron 2 of 94) 56755 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 127.333-12 chr10 22218045 22218379 + 0.666667 NA Intergenic Intergenic -8229 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 134.333-65 chr2 160665187 160665565 + 0.666667 NA Intergenic Intergenic -171569 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 169.5-31 chr2 59158349 59158662 + 0.666667 NA Intergenic Intergenic -59203 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 114.167-36 chr16 22397488 22397690 + 0.666667 NA intron (NR_136333, intron 1 of 3) intron (NR_136333, intron 1 of 3) 11820 NR_136333 105371130 Hs.639607 NR_136333 MFSD13B - major facilitator superfamily domain containing 13B (pseudogene) pseudo 158.333-19 chr12 23180992 23181402 + 0.666667 NA intron (NR_120471, intron 1 of 4) intron (NR_120471, intron 1 of 4) 5561 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 155-44 chr20 11531798 11532166 + 0.666667 NA Intergenic L1PA17|LINE|L1 -258599 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 127.667-98 chr8 117334612 117334927 + 0.666667 NA Intergenic MLT2B2|LTR|ERVL -185944 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 203-15 chr16 48281171 48281506 + 0.666667 NA intron (NM_031490, intron 8 of 14) intron (NM_031490, intron 8 of 14) -33799 NM_001370497 85320 Hs.652267 NM_032583 ENSG00000121270 ABCC11 EWWD|MRP8|WW ATP binding cassette subfamily C member 11 protein-coding 296-7 chr14 71025061 71025877 + 0.666667 NA intron (NM_014982, intron 13 of 35) L1MC4|LINE|L1 118010 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 186.667-56 chr3 177260487 177261092 + 0.666667 NA Intergenic Intergenic -33653 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 145.167-7 chr1 213695454 213695809 + 0.666667 NA Intergenic Intergenic -229118 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 162.5-54 chr4 65509875 65510189 + 0.666667 NA intron (NM_001281767, intron 3 of 16) AluSp|SINE|Alu 159456 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 270.167-7 chr17 40081320 40081980 + 0.666667 NA intron (NM_001190919, intron 4 of 9) intron (NM_001190919, intron 4 of 9) 18685 NM_001190918 7067 Hs.724 NM_003250 ENSG00000126351 THRA AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|c-ERBA-1 thyroid hormone receptor alpha protein-coding 245.667-16 chr2 45567878 45568434 + 0.666667 NA intron (NM_018079, intron 9 of 20) intron (NM_018079, intron 9 of 20) 43111 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 129-98 chr8 124815182 124815565 + 0.666667 NA Intergenic Intergenic -6612 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 126.833-33 chr17 53005658 53005905 + 0.666667 NA Intergenic Intergenic 20276 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 114.667-72 chr3 27937315 27937489 + 0.666667 NA Intergenic Intergenic -103266 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 215.5-25 chr22 25213737 25214119 + 0.666667 NA Intergenic L2b|LINE|L2 -5711 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 154.333-47 chr22 28568345 28568697 + 0.666667 NA intron (NM_001145418, intron 2 of 22) L1PA15|LINE|L1 108652 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 186.333-15 chr12 14609152 14609454 + 0.666667 NA intron (NR_120465, intron 2 of 5) L1M1|LINE|L1 -41420 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 244.667-2 chr10 73429888 73430696 + 0.666667 NA intron (NM_001024593, intron 1 of 6) L1MB5|LINE|L1 3269 NM_001024593 118490 Hs.631823 NM_001024593 ENSG00000166343 MSS51 ZMYND17 MSS51 mitochondrial translational activator protein-coding 125.333-106 chr6 122449520 122449741 + 0.666667 NA intron (NM_020755, intron 7 of 9) Tigger1|DNA|TcMar-Tigger 22177 NM_020755 57515 Hs.146668 NM_020755 ENSG00000111897 SERINC1 TDE1L|TDE2|TMS-2|TMS2 serine incorporator 1 protein-coding 137.667-32 chr15 59279925 59280228 + 0.666667 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 73233 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 119.167-42 chr2 49236093 49236363 + 0.666667 NA Intergenic Intergenic -81701 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 232-37 chr8 136277558 136278180 + 0.666667 NA Intergenic Intergenic -252929 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 122.5-44 chr19 50807684 50808145 + 0.666667 NA Intergenic Intergenic -3061 NM_001290150 84798 Hs.256301 NM_032712 ENSG00000167747 C19orf48 - chromosome 19 open reading frame 48 protein-coding 126.667-5 chr1 179712006 179712240 + 0.666667 NA Intergenic L2c|LINE|L2 -15653 NM_001329713 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 146.667-48 chr2 20170563 20170876 + 0.666667 NA Intergenic Intergenic 54411 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 117.333-49 chr2 168941877 168942179 + 0.666667 NA intron (NM_003742, intron 21 of 27) intron (NM_003742, intron 21 of 27) 40737 NM_021176 57818 Hs.283963 NM_021176 ENSG00000152254 G6PC2 IGRP glucose-6-phosphatase catalytic subunit 2 protein-coding 172-36 chr2 49719682 49720177 + 0.666667 NA Intergenic Intergenic 254274 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 244-22 chr7 103727395 103727916 + 0.666667 NA intron (NM_005045, intron 7 of 64) intron (NM_005045, intron 7 of 64) 261861 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 170.833-7 chr11 37410559 37410905 + 0.666667 NA Intergenic Intergenic -527869 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 129.167-27 chr15 65850404 65850959 + 0.666667 NA Intergenic Intergenic -18810 NM_001206836 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 169.333-43 chr21 30188320 30188778 + 0.666667 NA Intergenic Intergenic -21744 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 120.333-71 chr3 22500964 22501206 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger 543946 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 212.667-39 chr6 12082185 12082737 + 0.666667 NA intron (NM_002114, intron 2 of 8) intron (NM_002114, intron 2 of 8) 70149 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 197.5-27 chr2 63924443 63924947 + 0.666667 NA intron (NM_001005739, intron 12 of 22) L1ME3D|LINE|L1 82815 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 138.167-30 chr17 39512446 39512710 + 0.666667 NA intron (NM_015083, intron 8 of 13) intron (NM_015083, intron 8 of 13) 51092 NM_015083 51755 Hs.345028 NM_015083 ENSG00000167258 CDK12 CRK7|CRKR|CRKRS cyclin dependent kinase 12 protein-coding 148.667-25 chr16 11224063 11224517 + 0.666667 NA Intergenic Intergenic 31892 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 206.667-22 chr17 59506761 59507168 + 0.666667 NA intron (NR_110813, intron 1 of 2) MIR|SINE|MIR 19893 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 127.667-95 chr8 63233082 63233448 + 0.666667 NA Intergenic L1M5|LINE|L1 64262 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 132.5-29 chr14 60393347 60393611 + 0.666667 NA Intergenic L1MA1|LINE|L1 70283 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 160-16 chr11 77342159 77342456 + 0.666667 NA intron (NM_001128620, intron 10 of 15) intron (NM_001128620, intron 10 of 15) -40641 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 183-20 chr2 49446306 49446799 + 0.666667 NA Intergenic AluSq|SINE|Alu -292025 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 176.333-27 chr15 33797077 33797490 + 0.666667 NA intron (NM_001243996, intron 67 of 102) intron (NM_001243996, intron 67 of 102) -171214 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 145.333-13 chr10 68314040 68314364 + 0.666667 NA intron (NM_001033083, intron 1 of 8) AluSx|SINE|Alu -17491 NM_001322438 3189 Hs.643472 NM_012207 ENSG00000096746 HNRNPH3 2H9|HNRPH3 heterogeneous nuclear ribonucleoprotein H3 protein-coding 128.667-112 chrX 55227873 55228130 + 0.666667 NA Intergenic MSTB-int|LTR|ERVL-MaLR 7655 NM_130467 90737 Hs.668491 NM_130467 ENSG00000158639 PAGE5 CT16|CT16.1|CT16.2|GAGEE1|PAGE-5 PAGE family member 5 protein-coding 126.333-100 chr7 43628960 43629206 + 0.666667 NA intron (NR_163918, intron 8 of 9) L1MDa|LINE|L1 45975 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 187-28 chr3 83740303 83740849 + 0.666667 NA Intergenic Intergenic 1128999 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 154.5-42 chr20 14090214 14090655 + 0.666667 NA intron (NM_001351663, intron 3 of 17) AluSg4|SINE|Alu 94918 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 186.333-41 chr3 103762012 103762474 + 0.666667 NA Intergenic L3|LINE|CR1 -238127 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 132-14 chr10 83480664 83481098 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger 196208 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 163.834-3 chr12 130396567 130397194 + 0.666667 NA 3' UTR (NM_001351227, exon 21 of 21) 3' UTR (NM_001351227, exon 21 of 21) 58993 NM_004764 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 235-21 chr21 29137311 29137872 + 0.666667 NA intron (NM_001286620, intron 2 of 4) intron (NM_001286620, intron 2 of 4) 6377 NM_001371371 168-70 chr7 5076463 5076809 + 0.666667 NA Intergenic MER73|LTR|ERVL 4576 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 183.167-51 chr5 131543230 131543687 + 0.666667 NA intron (NM_016340, intron 6 of 27) intron (NM_016340, intron 6 of 27) 91771 NM_001164386 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 126.333-114 chr9 10784510 10784861 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL 171479 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 114.167-83 chr6 36719671 36720010 + 0.666667 NA intron (NM_001257357, intron 7 of 13) L2a|LINE|L2 22014 NM_001257357 401258 Hs.485258 NM_207498 ENSG00000255587 RAB44 RASD3|RASL13|dJ431A14.3 RAB44, member RAS oncogene family protein-coding 140.333-5 chr1 240020241 240020574 + 0.666667 NA Intergenic L1MB4|LINE|L1 12883 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 282.167-9 chr19 24392164 24392707 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr -228988 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 145.667-52 chr20 13885929 13886233 + 0.666667 NA intron (NR_073206, intron 10 of 20) intron (NR_073206, intron 10 of 20) 101053 NM_001039375 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 133.833-3 chr1 244006457 244006704 + 0.666667 NA intron (NR_033883, intron 4 of 11) ERV3-16A3_I-int|LTR|ERVL -42359 NM_001278196 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 197.333-34 chr3 1259115 1259684 + 0.666667 NA intron (NM_001289080, intron 4 of 22) intron (NM_001289080, intron 4 of 22) 166375 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 147.5-25 chr12 95446126 95446500 + 0.666667 NA Intergenic HERVK22-int|LTR|ERVK -27839 NM_006838 10988 Hs.444986 NM_006838 ENSG00000111142 METAP2 MAP2|MNPEP|p67eIF2 methionyl aminopeptidase 2 protein-coding 206-21 chr3 7233861 7234238 + 0.666667 NA intron (NM_000844, intron 2 of 9) intron (NM_000844, intron 2 of 9) 301235 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 156-54 chr3 114699598 114700019 + 0.666667 NA intron (NM_001348805, intron 5 of 10) intron (NM_001348805, intron 5 of 10) 43717 NR_039959 100616166 NR_039959 ENSG00000264623 MIR4796 mir-4796 microRNA 4796 ncRNA 145-73 chr5 162664317 162664667 + 0.666667 NA Intergenic Intergenic 596850 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 129-30 chr13 37453280 37453643 + 0.666667 NA Intergenic Intergenic 31323 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 137.333-61 chr3 58046961 58047201 + 0.666667 NA intron (NM_001164318, intron 1 of 45) intron (NM_001164318, intron 1 of 45) 38659 NM_001164317 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 160.333-22 chr18 8074611 8075066 + 0.666667 NA intron (NM_002845, intron 8 of 30) L1M4|LINE|L1 292196 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 205.833-16 chr2 79347047 79347492 + 0.666667 NA Intergenic MIR|SINE|MIR 153575 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 180.667-13 chr12 827314 827836 + 0.666667 NA intron (NM_001184985, intron 3 of 27) AluSz|SINE|Alu 74652 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 157.333-50 chr3 121023684 121023942 + 0.666667 NA intron (NR_145517, intron 3 of 8) AluY|SINE|Alu -25827 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 171.5-63 chr8 132498878 132499188 + 0.666667 NA Intergenic MLT1J|LTR|ERVL-MaLR -17938 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 149.5-63 chr8 6659464 6659766 + 0.666667 NA intron (NR_125386, intron 1 of 4) MER57A1|LTR|ERV1 -37395 NR_107022 102465861 NR_107022 ENSG00000276580 MIR8055 hsa-mir-8055 microRNA 8055 ncRNA 133.333 chr1 55204112 55204450 + 0.666667 NA intron (NM_015306, intron 1 of 67) intron (NM_015306, intron 1 of 67) 11083 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 305.5-9 chr5 39404275 39404983 + 0.666667 NA intron (NM_001343, intron 1 of 14) AluSx1|SINE|Alu 20351 NM_001343 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 271.5-5 chr14 51993485 51994180 + 0.666667 NA intron (NM_016039, intron 3 of 7) intron (NM_016039, intron 3 of 7) 4286 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 150-49 chr3 20414219 20414493 + 0.666667 NA Intergenic Intergenic 71888 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 143.5-73 chr6 169095588 169095842 + 0.666667 NA Intergenic MSTA|LTR|ERVL-MaLR 27929 NR_134619 102724357 Hs.129310 NR_134619 ENSG00000234519 LOC102724357 - uncharacterized LOC102724357 ncRNA 116.833-7 chr10 81967822 81968316 + 0.666667 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 90382 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 136.667-42 chr2 79076822 79077098 + 0.666667 NA Intergenic L1M4|LINE|L1 11033 NM_006507 5968 Hs.4158 NM_006507 ENSG00000172023 REG1B PSPS2|REGH|REGI-BETA|REGL regenerating family member 1 beta protein-coding 146.833-19 chr15 71883308 71883580 + 0.666667 NA intron (NM_006901, intron 28 of 41) intron (NM_006901, intron 28 of 41) 72890 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 186.167-9 chr10 102220139 102220554 + 0.666667 NA Intergenic Intergenic -5953 NM_152310 83401 Hs.302130 NM_152310 ENSG00000119915 ELOVL3 CIG-30|CIG30 ELOVL fatty acid elongase 3 protein-coding 149.167-4 chr1 160384384 160384624 + 0.666667 NA Intergenic AluY|SINE|Alu -16060 NM_020335 57216 Hs.99477 NM_020335 ENSG00000162738 VANGL2 LPP1|LTAP|STB1|STBM|STBM1 VANGL planar cell polarity protein 2 protein-coding 162.667-52 chr3 118634027 118634397 + 0.666667 NA intron (NR_135547, intron 2 of 3) intron (NR_135547, intron 2 of 3) -7556 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 135.333-14 chr11 30614606 30614894 + 0.666667 NA Intergenic L1MA10|LINE|L1 -28397 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 186.833-45 chr7 56724134 56724640 + 0.666667 NA Intergenic L1MB8|LINE|L1 88349 NR_130727 401357 Hs.457696 NR_130727 LOC401357 - uncharacterized LOC401357 ncRNA 147.667-43 chr3 34839082 34839435 + 0.666667 NA Intergenic Intergenic 554765 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 116.667-105 chr8 25744845 25745034 + 0.666667 NA Intergenic MER115|DNA|hAT-Tip100 285706 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 157.5-7 chr10 97637246 97637600 + 0.666667 NA Intergenic Intergenic -3263 NM_018425 55361 Hs.25300 NM_018425 ENSG00000155252 PI4K2A PI4KII|PIK42A phosphatidylinositol 4-kinase type 2 alpha protein-coding 153-23 chr18 31523865 31524158 + 0.666667 NA intron (NM_001943, intron 6 of 14) intron (NM_001943, intron 6 of 14) 25834 NM_001943 1829 Hs.412597 NM_001943 ENSG00000046604 DSG2 CDHF5|HDGC desmoglein 2 protein-coding 140.833-65 chr9 37562122 37562636 + 0.666667 NA intron (NM_012166, intron 1 of 10) intron (NM_012166, intron 1 of 10) 14001 NM_012166 26267 Hs.709527 NM_012166 ENSG00000147912 FBXO10 FBX10|PRMT11 F-box protein 10 protein-coding 117-59 chr2 215344074 215344286 + 0.666667 NA intron (NM_004044, intron 12 of 15) intron (NM_004044, intron 12 of 15) 32121 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 364.333 chr10 35634129 35634914 + 0.666667 NA Intergenic Intergenic 6731 NR_039831 100616500 NR_039831 ENSG00000284265 MIR4683 - microRNA 4683 ncRNA 120.667-121 chr9 29660355 29660595 + 0.666667 NA Intergenic Intergenic -446874 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 135.167-24 chr13 99372956 99373207 + 0.666667 NA intron (NR_026644, intron 8 of 8) AluY|SINE|Alu 16950 NR_030353 693208 NR_030353 ENSG00000207719 MIR623 MIRN623|hsa-mir-623 microRNA 623 ncRNA 174.667-2 chr1 51991628 51991972 + 0.666667 NA Intergenic AluSz|SINE|Alu -1100 NM_002867 5865 Hs.123072 NM_002867 ENSG00000169213 RAB3B - RAB3B, member RAS oncogene family protein-coding 121.333-40 chr19 11313758 11313983 + 0.666667 NA intron (NM_012466, intron 6 of 6) L1MB7|LINE|L1 17710 NM_012466 26526 Hs.579784 NM_012466 ENSG00000130167 TSPAN16 TM-8|TM4-B|TM4SF16 tetraspanin 16 protein-coding 117.834-3 chr21 22874758 22875296 + 0.666667 NA Intergenic Intergenic -204257 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 159.5-23 chr2 98456352 98456852 + 0.666667 NA intron (NM_001351428, intron 1 of 24) AluJr4|SINE|Alu 10592 NM_001351426 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 124-59 chr20 3723555 3723940 + 0.666667 NA Intergenic L1MC2|LINE|L1 -8938 NM_001197327 116835 Hs.516854 NM_052970 ENSG00000132622 HSPA12B C20orf60 heat shock protein family A (Hsp70) member 12B protein-coding 137.167-32 chr2 29303986 29304294 + 0.666667 NA intron (NM_004304, intron 8 of 28) intron (NM_004304, intron 8 of 28) -80240 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 162-21 chr14 23801900 23802276 + 0.666667 NA Intergenic Intergenic -151682 NM_001282988 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 199.667-11 chr11 100871590 100872135 + 0.666667 NA intron (NM_001367945, intron 6 of 25) AluSp|SINE|Alu -62412 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 141.667-57 chr22 22946972 22947311 + 0.666667 NA Intergenic AluSz|SINE|Alu 59325 NM_001178126 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 121.833-43 chr22 48595994 48596176 + 0.666667 NA intron (NM_015381, intron 1 of 3) intron (NM_015381, intron 1 of 3) 19745 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 121.667-12 chr10 73190656 73190903 + 0.666667 NA intron (NM_173348, intron 3 of 13) AluJr|SINE|Alu 22660 NM_173348 317662 Hs.408577 NM_173348 ENSG00000138286 FAM149B1 KIAA0974 family with sequence similarity 149 member B1 protein-coding 132.333-75 chr3 189516059 189516339 + 0.666667 NA Intergenic Intergenic -80547 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 126.167-46 chr2 188809535 188809832 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -19560 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 160.333-13 chr14 58200793 58201149 + 0.666667 NA intron (NM_018477, intron 1 of 12) intron (NM_018477, intron 1 of 12) 822 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 182-20 chr16 52859536 52860064 + 0.666667 NA Intergenic Intergenic 193073 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 243-28 chr7 120019856 120020232 + 0.666667 NA Intergenic Intergenic -112669 NR_131961 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 130.833-6 chr1 201520940 201521324 + 0.666667 NA TTS (NR_026667) TTS (NR_026667) 1228 NR_026667 376693 Hs.605989 NR_026667 RPS10P7 RPS10_2_147 ribosomal protein S10 pseudogene 7 pseudo 135.833-67 chr7 48999974 49000352 + 0.666667 NA Intergenic Intergenic 75616 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 249.333-26 chr7 40196092 40196580 + 0.666667 NA intron (NM_024728, intron 6 of 14) L2a|LINE|L2 61360 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 172-25 chr16 6364721 6365197 + 0.666667 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 345256 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 114.667-84 chr3 113195119 113195328 + 0.666667 NA Intergenic Intergenic -16334 NM_001301867 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 128.667-69 chr20 31902363 31902735 + 0.666667 NA intron (NM_001367620, intron 4 of 11) L1MB7|LINE|L1 22732 NR_160276 164395 Hs.712915 NM_001008409 ENSG00000131044 TTLL9 C20orf125 tubulin tyrosine ligase like 9 protein-coding 237.667-20 chr8 80704011 80704443 + 0.666667 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 170241 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 143.5-56 chr3 109262434 109262702 + 0.666667 NA Intergenic LTR40a|LTR|ERVL 53949 NM_138815 151871 Hs.351113 NM_138815 ENSG00000163530 DPPA2 CT100|ECAT15-2|PESCRG1 developmental pluripotency associated 2 protein-coding 213.5-27 chr3 182165148 182165543 + 0.666667 NA Intergenic Intergenic 212981 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 142.333-57 chr2 140274435 140274755 + 0.666667 NA exon (NM_018557, exon 85 of 91) exon (NM_018557, exon 85 of 91) 312090 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 136.333-79 chr5 123518721 123519046 + 0.666667 NA intron (NM_001364148, intron 1 of 8) AluSz6|SINE|Alu 6706 NM_001364147 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 132.667-99 chr8 140456636 140457030 + 0.666667 NA intron (NM_031466, intron 1 of 22) intron (NM_031466, intron 1 of 22) 911 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 249.5-29 chr6 111356426 111357065 + 0.666667 NA intron (NM_001286431, intron 21 of 34) intron (NM_001286431, intron 21 of 34) 97406 NM_153369 91749 Hs.400572 NM_153369 ENSG00000173214 MFSD4B KIAA1919|NaGLT1 major facilitator superfamily domain containing 4B protein-coding 152.667-34 chr15 60201760 60202037 + 0.666667 NA Intergenic Arthur1|DNA|hAT-Tip100 196088 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 119-19 chr11 82503434 82503696 + 0.666667 NA Intergenic Intergenic -99652 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 189.667-33 chr3 2663987 2664491 + 0.666667 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -227976 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 134.833-54 chr5 176463620 176463862 + 0.666667 NA intron (NM_014613, intron 1 of 10) AluSz|SINE|Alu 15356 NM_014613 23197 Hs.484242 NM_014613 ENSG00000113194 FAF2 ETEA|UBXD8|UBXN3B Fas associated factor family member 2 protein-coding 260.667-15 chr22 32734871 32735338 + 0.666667 NA intron (NM_003490, intron 6 of 13) LTR67B|LTR|ERVL -65712 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 153.333-62 chr4 100818834 100819161 + 0.666667 NA Intergenic MIR|SINE|MIR -143884 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 161.667-34 chr16 81509660 81509971 + 0.666667 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) 14461 NM_030629 80790 Hs.594095 NM_030629 ENSG00000153815 CMIP TCMIP c-Maf inducing protein protein-coding 151.833-57 chr8 79652207 79652601 + 0.666667 NA intron (NM_007029, intron 3 of 4) intron (NM_007029, intron 3 of 4) 41287 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 135.333-6 chr1 210596389 210596664 + 0.666667 NA intron (NM_001122834, intron 10 of 11) L1MA3|LINE|L1 267160 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 198.333-47 chr8 118660608 118661072 + 0.666667 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -38877 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 154.333-70 chr7 27601294 27601596 + 0.666667 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -14529 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 260.833-15 chr7 15654314 15655009 + 0.666667 NA intron (NM_005924, intron 1 of 2) L1MD1|LINE|L1 -13286 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 114.667-115 chr7 5581680 5582073 + 0.666667 NA Intergenic AluSq2|SINE|Alu -10940 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 131.667-115 chr7 7870997 7871256 + 0.666667 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) 97626 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 136.833-31 chr2 82631897 82632390 + 0.666667 NA Intergenic Intergenic -224660 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 253.333-14 chr4 136605018 136605574 + 0.666667 NA Intergenic Intergenic -588460 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 177.5-35 chr19 49518715 49519026 + 0.666667 NA intron (NM_004107, intron 3 of 5) AluYm1|SINE|Alu 5604 NM_004107 2217 Hs.111903 NM_004107 ENSG00000104870 FCGRT FCRN|alpha-chain Fc fragment of IgG receptor and transporter protein-coding 149.333-69 chr4 62221369 62221744 + 0.666667 NA Intergenic Intergenic -59791 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 143.667-53 chr2 4189982 4190198 + 0.666667 NA Intergenic L2c|LINE|L2 215929 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 180.333-25 chr18 44586639 44586986 + 0.666667 NA Intergenic Intergenic 55033 NR_131768 105667213 Hs.135737 NR_131768 LINC01601 - long intergenic non-protein coding RNA 1601 ncRNA 165.833-42 chr3 177901552 177901947 + 0.666667 NA Intergenic L1M1|LINE|L1 84884 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 204.833-20 chr4 61706879 61707223 + 0.666667 NA intron (NM_001371342, intron 4 of 20) Tigger1|DNA|TcMar-Tigger 454714 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 134-54 chr18 8052207 8052611 + 0.666667 NA intron (NM_002845, intron 7 of 30) Tigger3a|DNA|TcMar-Tigger 314625 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 206.667-24 chr18 36097691 36098251 + 0.666667 NA Intergenic AluJb|SINE|Alu -30377 NM_001303413 55197 Hs.464912 NM_018170 ENSG00000141425 RPRD1A HsT3101|P15RS regulation of nuclear pre-mRNA domain containing 1A protein-coding 219.666-3 chr17 59904032 59904669 + 0.666667 NA intron (NM_001272044, intron 2 of 15) AluSg|SINE|Alu 11229 NR_161457 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 161.167-47 chr5 156267150 156267459 + 0.666667 NA Intergenic Intergenic -59453 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 191.5-21 chr17 31686148 31686517 + 0.666667 NA Intergenic L3|LINE|CR1 110921 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 175.667-37 chr20 35955336 35955693 + 0.666667 NA promoter-TSS (NM_033630) promoter-TSS (NM_033630) -155 NM_016558 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 127.333-27 chr12 82108530 82108764 + 0.666667 NA Intergenic Intergenic 154928 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 209.167-25 chr4 41321131 41321734 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR -38175 NM_001289124 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 119-103 chr9 105734277 105734552 + 0.666667 NA intron (NM_018112, intron 4 of 5) L1M2a|LINE|L1 39873 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 247.667-6 chr13 45287194 45287681 + 0.666667 NA Intergenic Intergenic 49010 NR_145985 109616966 NR_145726 ENSG00000253051 SNORA31B - small nucleolar RNA, H/ACA box 31B snoRNA 203-48 chr8 136207937 136208328 + 0.666667 NA Intergenic Intergenic -322666 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 158.667-26 chr14 54426814 54427252 + 0.666667 NA 3' UTR (NM_005776, exon 5 of 5) 3' UTR (NM_005776, exon 5 of 5) 14341 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 426.333 chr11 42223297 42224101 + 0.666667 NA intron (NR_038309, intron 4 of 5) AluSg4|SINE|Alu 29991 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 231.834-8 chrX 65860370 65861159 + 0.666667 NA Intergenic Intergenic -158106 NR_029637 407008 NR_029637 ENSG00000284567 MIR223 MIRN223|miRNA223|mir-223 microRNA 223 ncRNA 135.667-23 chr11 78351630 78351920 + 0.666667 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) -9895 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 117.667-124 chr8 130369138 130369400 + 0.666667 NA intron (NM_001247996, intron 2 of 30) Tigger4b|DNA|TcMar-Tigger -72736 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 181.666 chr1 71655098 71655634 + 0.666667 NA intron (NM_173808, intron 4 of 6) intron (NM_173808, intron 4 of 6) 181646 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 123.167-17 chr11 43838242 43838575 + 0.666667 NA intron (NM_016142, intron 8 of 10) intron (NM_016142, intron 8 of 10) -42423 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 411 chr15 68873128 68873805 + 0.666667 NA Intergenic Charlie2b|DNA|hAT-Charlie -52571 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 307.333-4 chr18 62178638 62179726 + 0.666667 NA intron (NM_176787, intron 1 of 30) L1MC3|LINE|L1 7874 NM_176787 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 145.5-64 chr5 104290564 104290882 + 0.666667 NA Intergenic L1MEg|LINE|L1 -727934 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 203-8 chr12 42085692 42086178 + 0.666667 NA 3' UTR (NM_001099650, exon 7 of 7) 3' UTR (NM_001099650, exon 7 of 7) 58939 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 139.667-96 chr8 132074828 132075347 + 0.666667 NA intron (NM_001145095, intron 13 of 15) intron (NM_001145095, intron 13 of 15) -15705 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 146.5-92 chr8 121345603 121346004 + 0.666667 NA Intergenic Intergenic -293543 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 167-33 chr2 214237388 214237707 + 0.666667 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -173507 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 139.5-31 chr2 206648782 206649330 + 0.666667 NA 3' UTR (NM_001102659, exon 2 of 2) 3' UTR (NM_001102659, exon 2 of 2) 4829 NM_001102659 200726 NM_001102659 ENSG00000235118 FAM237A - family with sequence similarity 237 member A protein-coding 331.333-10 chr9 26965427 26965983 + 0.666667 NA intron (NM_001099224, intron 2 of 13) L1PB4|LINE|L1 9293 NM_001349928 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 118.833-48 chr20 40295604 40295894 + 0.666667 NA Intergenic L1ME3C|LINE|L1 291288 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 167.167-49 chr5 136091562 136091813 + 0.666667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -11089 NR_030583 100126299 NR_030583 ENSG00000278815 VTRNA2-1 CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886|pre-miR-886|svtRNA2-1a vault RNA 2-1 ncRNA 159-53 chr3 182517210 182517571 + 0.666667 NA Intergenic Intergenic -10266 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 118.167-50 chr4 89817554 89817966 + 0.666667 NA intron (NM_001146054, intron 4 of 5) intron (NM_001146054, intron 4 of 5) -18641 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 122-21 chr15 94871070 94871373 + 0.666667 NA Intergenic Intergenic 15858 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 202.333-50 chr9 32528571 32528927 + 0.666667 NA Intergenic AluJb|SINE|Alu -2553 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIG1|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 178-30 chr22 36087397 36087776 + 0.666667 NA Intergenic AluSq2|SINE|Alu -58762 NM_001082578 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 128.333-105 chr6 56707425 56707667 + 0.666667 NA intron (NM_001144770, intron 3 of 94) intron (NM_001144770, intron 3 of 94) -64657 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 146.833-58 chr7 51733371 51733643 + 0.666667 NA Intergenic Intergenic -340251 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 168.667-10 chr12 62300664 62301140 + 0.666667 NA intron (NR_147080, intron 2 of 19) L1ME1|LINE|L1 40498 NR_147082 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 232-29 chr7 41419890 41420433 + 0.666667 NA Intergenic Intergenic -273758 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 135.167-22 chr12 14733940 14734376 + 0.666667 NA Intergenic Intergenic 36973 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 114.5-25 chr12 53853326 53853557 + 0.666667 NA Intergenic Intergenic -85390 NM_017410 3229 Hs.118608 NM_017410 ENSG00000123364 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 180.667-12 chr11 44027902 44028206 + 0.666667 NA Intergenic AluJr|SINE|Alu -19927 NM_001363113 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 175-61 chr8 117043608 117043936 + 0.666667 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -91223 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 198-23 chr16 80791757 80792244 + 0.666667 NA intron (NM_152342, intron 1 of 6) L2c|LINE|L2 12598 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 178-38 chr3 184965556 184965938 + 0.666667 NA intron (NM_001009921, intron 37 of 46) L2|LINE|L2 153240 NR_146116 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 160.5-54 chr7 23697996 23698489 + 0.666667 NA exon (NM_001300932, exon 4 of 6) exon (NM_001300932, exon 4 of 6) -11977 NM_031414 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 136.667-37 chr2 14023942 14024305 + 0.666667 NA Intergenic Intergenic 376835 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 166.333-82 chr8 140431702 140432255 + 0.666667 NA intron (NM_001160372, intron 4 of 22) intron (NM_001160372, intron 4 of 22) 25766 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 180.5-5 chr1 150637499 150637832 + 0.666667 NA Intergenic Intergenic -8043 NM_207043 2029 Hs.632456 NM_004436 ENSG00000143420 ENSA ARPP-19e endosulfine alpha protein-coding 241.833-14 chr5 83669127 83669851 + 0.666667 NA intron (NM_001884, intron 2 of 4) AluSx1|SINE|Alu 51366 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 363-6 chr7 31830376 31831079 + 0.666667 NA intron (NM_001191059, intron 12 of 18) MLT1J1|LTR|ERVL-MaLR 143512 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 136.667-96 chr7 91737221 91737456 + 0.666667 NA Intergenic L1MA2|LINE|L1 143364 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 184.167-6 chr1 217515546 217516125 + 0.666667 NA intron (NM_018040, intron 5 of 9) intron (NM_018040, intron 5 of 9) 115255 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 127.167-81 chr7 31453705 31454143 + 0.666667 NA Intergenic Intergenic -60147 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 129.333-92 chr7 114042577 114042897 + 0.666667 NA Intergenic L1MA7|LINE|L1 -43590 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 140-53 chr3 182336157 182336435 + 0.666667 NA Intergenic L1ME2|LINE|L1 150066 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 171.5-19 chr14 88108379 88108736 + 0.666667 NA Intergenic MLT1J|LTR|ERVL-MaLR -82245 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 154-27 chr15 80863277 80863565 + 0.666667 NA intron (NM_018689, intron 1 of 28) L2b|LINE|L2 -21348 NR_030393 693132 NR_030393 ENSG00000208003 MIR549A MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a microRNA 549a ncRNA 179-28 chr2 135159146 135159653 + 0.666667 NA intron (NM_001172435, intron 19 of 24) L1MC3|LINE|L1 22771 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 154.333-65 chr6 46566754 46567263 + 0.666667 NA intron (NM_016593, intron 10 of 11) L1MA9|LINE|L1 -74941 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 154.333-62 chr5 130669607 130670027 + 0.666667 NA Intergenic L1M2|LINE|L1 495439 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 116-59 chr22 19278258 19278506 + 0.666667 NA intron (NM_007098, intron 1 of 32) L2|LINE|L2 13337 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 121-68 chr5 81980027 81980258 + 0.666667 NA intron (NM_001131028, intron 2 of 8) L1M6|LINE|L1 8119 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 170.5-38 chr2 240652378 240652691 + 0.666667 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 27289 NM_005301 2859 Hs.112218 NM_005301 ENSG00000178623 GPR35 - G protein-coupled receptor 35 protein-coding 205.167-25 chr20 42548875 42549792 + 0.666667 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -136150 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 149.333-95 chr8 88911192 88911478 + 0.666667 NA Intergenic Intergenic -583852 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 151.667-14 chr11 95406805 95407189 + 0.666667 NA Intergenic Intergenic -174522 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 178.667-10 chr12 39469047 39469370 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger -26088 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 208.667-22 chr17 79967235 79967858 + 0.666667 NA intron (NM_019020, intron 3 of 11) L1MB7|LINE|L1 -16693 NM_001271844 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 151.667-66 chr5 43445743 43446027 + 0.666667 NA 3' UTR (NM_022483, exon 3 of 3) 3' UTR (NM_022483, exon 3 of 3) -33494 NM_001301873 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 121.333-21 chr12 48006662 48006923 + 0.666667 NA Intergenic Intergenic -2316 NM_033150 1280 Hs.408182 NM_001844 ENSG00000139219 COL2A1 ANFH|AOM|COL11A3|SEDC|STL1 collagen type II alpha 1 chain protein-coding 148.833-58 chr7 89327342 89327665 + 0.666667 NA intron (NM_181646, intron 3 of 3) intron (NM_181646, intron 3 of 3) -531766 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 125.5-32 chr17 69516176 69516565 + 0.666667 NA intron (NM_001330450, intron 2 of 11) MER1A|DNA|hAT-Charlie 14108 NM_001330450 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 241.667-31 chr5 31989293 31989675 + 0.666667 NA intron (NM_178140, intron 3 of 24) AluSx3|SINE|Alu -53325 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 116.667-95 chr6 129612268 129612512 + 0.666667 NA intron (NM_033515, intron 7 of 14) intron (NM_033515, intron 7 of 14) 97787 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 116.333-87 chr5 124106545 124106808 + 0.666667 NA intron (NR_125774, intron 4 of 5) L2c|LINE|L2 331844 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 114.667-70 chr21 29829796 29830202 + 0.666667 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 81824 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 196-32 chr2 42416466 42416983 + 0.666667 NA Intergenic AluSz|SINE|Alu -47767 NM_001319036 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 168.5-16 chr13 108110662 108111181 + 0.666667 NA Intergenic Intergenic 103861 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 133.333-38 chr15 56039905 56040173 + 0.666667 NA Intergenic AluJb|SINE|Alu -46427 NM_006154 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 127.833-22 chr14 59884432 59884657 + 0.666667 NA Intergenic L1MB8|LINE|L1 -13768 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 182.833-47 chr5 145586526 145586878 + 0.666667 NA Intergenic Intergenic 248640 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 184-7 chr10 9287780 9288174 + 0.666667 NA TTS (NR_108039) TTS (NR_108039) 7616 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 128.333-89 chr4 59127966 59128423 + 0.666667 NA Intergenic Intergenic 114621 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 269.833-5 chr11 88639098 88639789 + 0.666667 NA intron (NM_001143831, intron 3 of 8) L1MD3|LINE|L1 134867 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 142.833-16 chr15 50080693 50080991 + 0.666667 NA intron (NR_073597, intron 2 of 26) AluY|SINE|Alu 32537 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 265.667-13 chr3 106264387 106265039 + 0.666667 NA Intergenic L1MC4|LINE|L1 -395312 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 188.167-28 chr3 70005389 70005854 + 0.666667 NA intron (NR_110000, intron 1 of 3) MLT1H2|LTR|ERVL-MaLR 5877 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 136.667-105 chr8 81481780 81482124 + 0.666667 NA intron (NM_001442, intron 1 of 3) intron (NM_001442, intron 1 of 3) 1281 NM_001442 2167 Hs.391561 NM_001442 ENSG00000170323 FABP4 A-FABP|AFABP|ALBP|HEL-S-104|aP2 fatty acid binding protein 4 protein-coding 127.333-118 chr8 138767945 138768378 + 0.666667 NA intron (NM_152888, intron 16 of 64) intron (NM_152888, intron 16 of 64) 145880 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 136.833-75 chr8 73183088 73183503 + 0.666667 NA Intergenic AluSc8|SINE|Alu 76207 NM_001243237 100130301 Hs.202296 NM_001243237 ENSG00000274443 C8orf89 - chromosome 8 open reading frame 89 protein-coding 197.5-32 chr3 42593632 42594009 + 0.666667 NA intron (NM_001370300, intron 2 of 2) L2a|LINE|L2 2960 NM_001370300 51188 Hs.534454 NM_016305 ENSG00000008324 SS18L2 KIAA-iso SS18 like 2 protein-coding 193.667-43 chr6 24977821 24978223 + 0.666667 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) -42062 NM_001286445 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 337.666 chr20 42684400 42685273 + 0.666667 NA promoter-TSS (NR_110004) promoter-TSS (NR_110004) -647 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 132.167-6 chr1 191180372 191180610 + 0.666667 NA Intergenic Intergenic 48007 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 113.833-83 chr7 91431761 91432143 + 0.666667 NA Intergenic L1MA5|LINE|L1 167519 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 213.667-25 chr3 150064059 150064628 + 0.666667 NA Intergenic Intergenic -32100 NR_136187 105374313 Hs.151216 NR_136187 LOC105374313 - uncharacterized LOC105374313 ncRNA 225.833-15 chr5 114839789 114840335 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -66649 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 169.333-62 chr6 115349948 115350204 + 0.666667 NA Intergenic Intergenic 293759 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 157-86 chr9 74825022 74825388 + 0.666667 NA intron (NM_017662, intron 7 of 38) AluSx1|SINE|Alu 62142 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 132.333-41 chr16 59167701 59168142 + 0.666667 NA Intergenic Intergenic -433605 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 160.667-38 chr2 35121737 35122202 + 0.666667 NA Intergenic MER103C|DNA|hAT-Charlie -349436 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 150.833-7 chr12 26472600 26473028 + 0.666667 NA intron (NM_002223, intron 45 of 56) intron (NM_002223, intron 45 of 56) 277241 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 148.167-2 chr1 83541764 83542082 + 0.666667 NA Intergenic Intergenic 95869 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 203-44 chr7 139806867 139807252 + 0.666667 NA intron (NM_001166254, intron 3 of 14) intron (NM_001166254, intron 3 of 14) -22205 NM_001366538 6916 Hs.520757 NM_001061 ENSG00000059377 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 protein-coding 124.5-25 chr14 97997603 97997835 + 0.666667 NA Intergenic Intergenic -19595 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 141.667-120 chrX 100094971 100095454 + 0.666667 NA Intergenic L1PA14|LINE|L1 315061 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 162-46 chr3 186512580 186512882 + 0.666667 NA Intergenic L2c|LINE|L2 -19070 NR_033844 253573 Hs.97386 NR_033844 ENSG00000224406 LINC02052 - long intergenic non-protein coding RNA 2052 ncRNA 116.833-25 chr2 27856746 27857051 + 0.666667 NA intron (NM_022128, intron 2 of 7) intron (NM_022128, intron 2 of 7) -31811 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 233.333-45 chr8 140648837 140649316 + 0.666667 NA Intergenic AluSg4|SINE|Alu -13443 NM_012154 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 117.667-114 chr6 133002425 133002766 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie -85485 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 161.5-37 chr5 127533189 127533747 + 0.666667 NA intron (NM_130809, intron 5 of 8) MIRb|SINE|MIR 15828 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 185.167-27 chr3 189421205 189421648 + 0.666667 NA Intergenic AluSx3|SINE|Alu -175320 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 125.667-21 chr11 112223987 112224219 + 0.666667 NA Intergenic Intergenic -2325 NM_000317 5805 Hs.503860 NM_000317 ENSG00000150787 PTS PTPS 6-pyruvoyltetrahydropterin synthase protein-coding 120.333-72 chr3 59246876 59247136 + 0.666667 NA Intergenic Intergenic -196974 NM_001351533 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 251.667-7 chr2 107391984 107392460 + 0.666667 NA Intergenic LTR12C|LTR|ERV1 -42697 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 174.333-71 chr8 120184166 120184566 + 0.666667 NA intron (NM_021110, intron 5 of 47) AluSz6|SINE|Alu 59264 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 120.667-91 chr4 168764952 168765193 + 0.666667 NA intron (NM_001166108, intron 10 of 21) MIRb|SINE|MIR -67023 NM_001367569 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 170.667-50 chr4 149935637 149936075 + 0.666667 NA Intergenic L1MA9|LINE|L1 -120013 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 256-3 chr12 1120532 1121124 + 0.666667 NA intron (NR_027948, intron 6 of 19) intron (NR_027948, intron 6 of 19) 93080 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 210.333-9 chr13 96410153 96410538 + 0.666667 NA intron (NM_153456, intron 1 of 1) L1M5|LINE|L1 -16884 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 121.5-116 chr9 81770927 81771228 + 0.666667 NA intron (NR_109772, intron 3 of 3) L2c|LINE|L2 81364 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 187.333-62 chr4 105559672 105560026 + 0.666667 NA intron (NM_001242729, intron 1 of 13) intron (NM_001242729, intron 1 of 13) -1742 NR_046840 100874374 Hs.668908 NR_046840 ENSG00000249885 ARHGEF38-IT1 - ARHGEF38 intronic transcript 1 ncRNA 165.833-40 chr3 96272789 96273095 + 0.666667 NA Intergenic Intergenic -87022 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 208.167-10 chr2 27814301 27814681 + 0.666667 NA intron (NM_022128, intron 7 of 7) intron (NM_022128, intron 7 of 7) 42772 NM_004891 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 123.333-64 chr2 224500900 224501246 + 0.666667 NA intron (NM_001257197, intron 9 of 14) intron (NM_001257197, intron 9 of 14) 68882 NM_001257198 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 119-45 chr17 60907153 60907449 + 0.666667 NA intron (NM_001330413, intron 11 of 25) intron (NM_001330413, intron 11 of 25) 229450 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 137.667-45 chr19 31346263 31346527 + 0.666667 NA intron (NR_138034, intron 1 of 1) intron (NR_138034, intron 1 of 1) 3041 NR_138035 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 115.834 chr1 61265053 61265555 + 0.666667 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) -11786 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 130-19 chr10 132357026 132357288 + 0.666667 NA intron (NM_001143757, intron 8 of 10) L1MC4a|LINE|L1 19817 NM_001309474 80313 Hs.119897 NM_030626 ENSG00000148814 LRRC27 - leucine rich repeat containing 27 protein-coding 181.333-16 chr14 76391215 76391644 + 0.666667 NA intron (NM_004452, intron 1 of 10) intron (NM_004452, intron 1 of 10) 20082 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 314-5 chr18 2566630 2567246 + 0.666667 NA exon (NM_001308401, exon 2 of 8) exon (NM_001308401, exon 2 of 8) 4567 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 258.167-20 chr9 78799285 78799769 + 0.666667 NA Intergenic L1MB5|LINE|L1 346139 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 126.167-76 chr5 131849617 131849893 + 0.666667 NA intron (NM_001303622, intron 11 of 12) L1MB7|LINE|L1 -52738 NM_001008738 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 207.333-2 chr1 21540404 21540949 + 0.666667 NA intron (NM_001177520, intron 1 of 9) intron (NM_001177520, intron 1 of 9) -10594 NM_001369803 249 Hs.75431 NM_000478 ENSG00000162551 ALPL AP-TNAP|APTNAP|HOPS|TNALP|TNAP|TNSALP alkaline phosphatase, biomineralization associated protein-coding 215-31 chr5 88158089 88158585 + 0.666667 NA Intergenic Intergenic 110508 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 192.167-34 chr5 105118578 105119061 + 0.666667 NA Intergenic L2a|LINE|L2 19345 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 118-112 chr7 4007390 4007575 + 0.666667 NA intron (NM_152744, intron 14 of 44) intron (NM_152744, intron 14 of 44) -122203 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 118.167-6 chr10 18897155 18897467 + 0.666667 NA Intergenic L1ME3|LINE|L1 -151490 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 197.333-59 chr8 23454017 23454398 + 0.666667 NA intron (NM_004901, intron 1 of 12) intron (NM_004901, intron 1 of 12) 3440 NM_004901 9583 Hs.444389 NM_004901 ENSG00000197217 ENTPD4 LALP70|LAP70|LYSAL1|NTPDase-4|UDPase ectonucleoside triphosphate diphosphohydrolase 4 protein-coding 132.667-74 chr4 114170553 114170872 + 0.666667 NA Intergenic L1M5|LINE|L1 -191065 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 198.167-8 chr15 94638275 94638872 + 0.666667 NA Intergenic L1MB8|LINE|L1 -216790 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 137.667-93 chr8 106120933 106121248 + 0.666667 NA Intergenic L1MEg|LINE|L1 -60587 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 149.667-65 chr5 157493155 157493600 + 0.666667 NA intron (NM_033274, intron 15 of 22) intron (NM_033274, intron 15 of 22) -33277 NR_136205 102724404 Hs.570889 NR_136204 LOC102724404 - uncharacterized LOC102724404 ncRNA 167.167-16 chr11 11705754 11706171 + 0.666667 NA Intergenic MER5B|DNA|hAT-Charlie -49240 NR_036184 100423026 NR_036184 ENSG00000266645 MIR4299 - microRNA 4299 ncRNA 168.333-15 chr14 23310706 23310993 + 0.666667 NA 3' UTR (NM_004050, exon 4 of 4) 3' UTR (NM_004050, exon 4 of 4) 3989 NM_001199839 599 Hs.410026 NM_004050 ENSG00000129473 BCL2L2 BCL-W|BCL2-L-2|BCLW|PPP1R51 BCL2 like 2 protein-coding 122.667-3 chr1 161126945 161127236 + 0.666667 NA intron (NM_001039711, intron 1 of 4) L2c|LINE|L2 5376 NM_001039712 9191 Hs.744092 NM_004216 ENSG00000158796 DEDD CASP8IP1|DEDD1|DEFT|FLDED1|KE05 death effector domain containing protein-coding 134-72 chr3 58813649 58814042 + 0.666667 NA intron (NM_001351530, intron 13 of 15) intron (NM_001351530, intron 13 of 15) -10626 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 158-55 chr8 72638346 72638768 + 0.666667 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -93488 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 114.167-53 chr2 229225487 229225776 + 0.666667 NA intron (NM_001100818, intron 1 of 2) THE1C|LTR|ERVL-MaLR 6461 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 120-81 chr4 81355548 81355885 + 0.666667 NA Intergenic Intergenic 116191 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 151-17 chr13 68846975 68847422 + 0.666667 NA Intergenic LTR60|LTR|ERV1 38127 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 125.667-26 chr12 123715716 123716053 + 0.666667 NA intron (NM_012463, intron 1 of 19) L1MC5|LINE|L1 3531 NM_012463 23545 Hs.25786 NM_012463 ENSG00000185344 ATP6V0A2 A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS ATPase H+ transporting V0 subunit a2 protein-coding 115.333-56 chr2 187155198 187155481 + 0.666667 NA Intergenic L1MEg|LINE|L1 292913 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 127.333-15 chr10 88643872 88644082 + 0.666667 NA Intergenic Intergenic -20465 NM_004190 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 126.667-97 chr8 84021866 84022203 + 0.666667 NA Intergenic L1M5|LINE|L1 -160753 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 215.833-6 chr14 54052830 54053333 + 0.666667 NA Intergenic Intergenic -96190 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 124.167-27 chr14 91144664 91145030 + 0.666667 NA intron (NM_001286471, intron 1 of 13) intron (NM_001286471, intron 1 of 13) 18421 NR_003709 100124539 Hs.693444 NR_003709 ENSG00000221102 SNORA11B - small nucleolar RNA, H/ACA box 11B snoRNA 199.667-49 chr5 23551542 23551869 + 0.666667 NA Intergenic Intergenic 44050 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 120-99 chr6 131923145 131923391 + 0.666667 NA Intergenic Intergenic 28104 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 180-43 chr5 92878734 92879092 + 0.666667 NA Intergenic Intergenic 692430 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 135.667-41 chr17 60575813 60576107 + 0.666667 NA intron (NR_126009, intron 2 of 3) AluJr4|SINE|Alu 11414 NR_126009 388406 Hs.368309 NR_126009 ENSG00000267772 LINC01999 - long intergenic non-protein coding RNA 1999 ncRNA 115.333-9 chr1 210816965 210817317 + 0.666667 NA intron (NM_002238, intron 7 of 10) intron (NM_002238, intron 7 of 10) 316233 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 229-43 chr7 39081386 39081915 + 0.666667 NA intron (NM_007252, intron 2 of 10) MIRc|SINE|MIR -68083 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 224.167-10 chr16 79396182 79396841 + 0.666667 NA Intergenic Intergenic 204226 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 178-41 chr4 91538645 91539046 + 0.666667 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 738457 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 125.333-98 chr5 144253079 144253343 + 0.666667 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 47820 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 188.167-27 chr3 16459321 16459845 + 0.666667 NA intron (NM_015150, intron 2 of 9) AluJr|SINE|Alu 54116 NM_015150 23180 Hs.98910 NM_015150 ENSG00000131378 RFTN1 MIG2|PIB10|PIG9|RAFTLIN raftlin, lipid raft linker 1 protein-coding 143.667-22 chr11 85479220 85479547 + 0.666667 NA intron (NM_001142699, intron 3 of 27) MLT1A0|LTR|ERVL-MaLR 147887 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 114.333-21 chr11 94264609 94264828 + 0.666667 NA Intergenic L1MB2|LINE|L1 -40919 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 125-88 chr7 114154040 114154274 + 0.666667 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 67830 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 198.667-51 chr6 169281100 169281409 + 0.666667 NA Intergenic Intergenic -27140 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 170-62 chr6 61947945 61948337 + 0.666667 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 338084 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 124-17 chr10 118347042 118347326 + 0.666667 NA Intergenic Intergenic -4860 NM_022063 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 172-16 chr12 70955392 70955816 + 0.666667 NA Intergenic AluJr4|SINE|Alu -34866 NM_002849 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 148.333-72 chr3 169047506 169047789 + 0.666667 NA Intergenic Intergenic 97876 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 152.834-3 chr6 118897903 118898423 + 0.666667 NA intron (NM_014034, intron 1 of 3) MIRb|SINE|MIR 4011 NM_014034 25842 Hs.292316 NM_014034 ENSG00000111875 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 177-12 chr11 83381210 83381553 + 0.666667 NA Intergenic Intergenic -94974 NM_001286119 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 149.333-64 chr3 163563999 163564347 + 0.666667 NA Intergenic Intergenic -260872 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 146.5-96 chr9 3430683 3431077 + 0.666667 NA intron (NM_001282116, intron 1 of 16) Tigger2|DNA|TcMar-Tigger -35284 NM_002919 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 131.667-13 chr10 55123438 55123738 + 0.666667 NA intron (NM_001354404, intron 3 of 34) LTR16E2|LTR|ERVL -322297 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 176.833-13 chr17 13802156 13802482 + 0.666667 NA Intergenic Intergenic -200390 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 165-4 chr1 178454653 178455026 + 0.666667 NA intron (NM_170692, intron 12 of 17) intron (NM_170692, intron 12 of 17) -58270 NM_001170723 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 127.333-45 chr2 16306357 16306654 + 0.666667 NA Intergenic Intergenic 256078 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 136.833-54 chr5 23122994 23123545 + 0.666667 NA Intergenic Intergenic -269925 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 119-36 chr15 89271555 89271826 + 0.666667 NA intron (NM_001113378, intron 10 of 37) AluJr|SINE|Alu 27711 NM_018193 55215 Hs.513126 NM_018193 ENSG00000140525 FANCI KIAA1794 FA complementation group I protein-coding 141.833-16 chr15 69630396 69630773 + 0.666667 NA intron (NR_126437, intron 3 of 5) intron (NR_126437, intron 3 of 5) 38384 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 125.667-32 chr14 57027401 57027639 + 0.666667 NA Intergenic L1MEc|LINE|L1 214362 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 120.333-36 chr12 124669136 124669404 + 0.666667 NA Intergenic Intergenic -101658 NM_006312 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 213-4 chr10 54799712 54800286 + 0.666667 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 1232 NM_001142770 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 160-48 chr20 54748342 54748724 + 0.666667 NA Intergenic L1ME3|LINE|L1 272940 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 205.167-5 chr10 67460070 67460428 + 0.666667 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -56839 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 174.5-50 chr7 108551143 108551551 + 0.666667 NA Intergenic MLT1A1|LTR|ERVL-MaLR 18106 NM_182529 168451 Hs.707689 NM_182529 ENSG00000177683 THAP5 - THAP domain containing 5 protein-coding 148.5-26 chr16 3850721 3851211 + 0.666667 NA exon (NM_001079846, exon 2 of 30) exon (NM_001079846, exon 2 of 30) 29154 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 158.833-48 chr5 17240103 17240564 + 0.666667 NA intron (NM_006317, intron 1 of 1) AluSx1|SINE|Alu 22702 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 232.333-15 chr2 78951377 78951814 + 0.666667 NA Intergenic L2c|LINE|L2 -74107 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 203.167-3 chr10 15106372 15106918 + 0.666667 NA 3' UTR (NM_004808, exon 12 of 12) 3' UTR (NM_004808, exon 12 of 12) 9290 NM_006414 10557 Hs.94986 NM_006414 ENSG00000152464 RPP38 - ribonuclease P/MRP subunit p38 protein-coding 201.333-30 chr5 41450085 41450502 + 0.666667 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 60308 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 126.333-22 chr12 61190946 61191316 + 0.666667 NA Intergenic Intergenic 1001708 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 137.167-61 chr7 49126635 49126968 + 0.666667 NA Intergenic Intergenic 202254 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 135.5-65 chr6 45369036 45369258 + 0.666667 NA intron (NM_181356, intron 1 of 12) intron (NM_181356, intron 1 of 12) 8371 NR_146635 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 158-5 chr1 151710157 151710503 + 0.666667 NA intron (NM_007185, intron 2 of 12) intron (NM_007185, intron 2 of 12) 6473 NM_001172648 11189 Hs.26047 NM_007185 ENSG00000159409 CELF3 BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4 CUGBP Elav-like family member 3 protein-coding 210.333-44 chr9 79255493 79255930 + 0.666667 NA Intergenic Intergenic -110045 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 204.333 chr1 41578610 41579182 + 0.666667 NA intron (NM_024503, intron 4 of 8) MIRb|SINE|MIR -94213 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 157.667-74 chr8 137269996 137270365 + 0.666667 NA Intergenic L1PREC2|LINE|L1 143408 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 141.667-17 chr12 40440674 40441004 + 0.666667 NA intron (NM_173600, intron 30 of 173) intron (NM_173600, intron 30 of 173) 47445 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 176.5-58 chr6 48080225 48080704 + 0.666667 NA Intergenic Intergenic -11775 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 141.167-79 chr9 98935662 98935952 + 0.666667 NA Intergenic Intergenic -8100 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 178.333-13 chr14 24975879 24976208 + 0.666667 NA intron (NM_014178, intron 1 of 5) intron (NM_014178, intron 1 of 5) 72957 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 156-87 chr8 82515167 82515543 + 0.666667 NA Intergenic Intergenic -396749 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 113.667-116 chr7 16945383 16945614 + 0.666667 NA Intergenic Intergenic -63515 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 206.333-6 chr14 25739400 25740021 + 0.666667 NA Intergenic THE1B-int|LTR|ERVL-MaLR -689413 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 161.667-73 chr7 4748267 4748598 + 0.666667 NA intron (NM_001037165, intron 2 of 8) intron (NM_001037165, intron 2 of 8) -27191 NM_014855 9907 Hs.558440 NM_014855 ENSG00000242802 AP5Z1 KIAA0415|SPG48|zeta adaptor related protein complex 5 subunit zeta 1 protein-coding 182-7 chr10 73263132 73263711 + 0.666667 NA intron (NM_001367801, intron 26 of 27) L1MC4a|LINE|L1 10680 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 118.667-35 chr15 66597392 66597723 + 0.666667 NA intron (NR_110372, intron 1 of 4) AluSz6|SINE|Alu 15367 NR_110372 102723165 Hs.636703 NR_110372 ENSG00000259471 LINC01169 - long intergenic non-protein coding RNA 1169 ncRNA 175-30 chr2 128759822 128760291 + 0.666667 NA Intergenic L1MB7|LINE|L1 -104544 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 119-27 chr13 27122927 27123229 + 0.666667 NA intron (NM_182488, intron 1 of 8) AluY|SINE|Alu -2455 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 272.5-14 chr22 28510806 28511256 + 0.666667 NA intron (NM_001145418, intron 2 of 22) L1PA11|LINE|L1 51162 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 147.333-64 chr4 100947224 100947529 + 0.666667 NA Intergenic Intergenic -272263 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 172 chr1 12356132 12356592 + 0.666667 NA intron (NM_015378, intron 48 of 69) intron (NM_015378, intron 48 of 69) 126332 NM_015378 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 146.333-92 chr8 22491379 22491669 + 0.666667 NA intron (NM_005605, intron 3 of 13) L1ME4b|LINE|L1 50554 NM_001243975 5533 Hs.731683 NM_005605 ENSG00000120910 PPP3CC CALNA3|CNA3|PP2Bgamma protein phosphatase 3 catalytic subunit gamma protein-coding 161.333-26 chr15 58011511 58012118 + 0.666667 NA intron (NM_170696, intron 3 of 11) intron (NM_170696, intron 3 of 11) 2209 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 170.5-35 chr2 185832955 185833430 + 0.666667 NA TTS (NM_173651) TTS (NM_173651) -33041 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 208-22 chr21 27643892 27644442 + 0.666667 NA Intergenic Intergenic -78212 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 218.667-35 chr6 148931695 148932053 + 0.666667 NA intron (NM_005715, intron 2 of 7) intron (NM_005715, intron 2 of 7) 32810 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 132.333-74 chr3 188445951 188446219 + 0.666667 NA intron (NM_001167672, intron 2 of 9) intron (NM_001167672, intron 2 of 9) 122581 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 113.167-82 chr9 91728831 91729161 + 0.666667 NA intron (NM_001318204, intron 7 of 7) intron (NM_001318204, intron 7 of 7) -92651 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 162.167-12 chr12 61181673 61181977 + 0.666667 NA Intergenic Intergenic 1011014 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 171.333-45 chr3 114714096 114714400 + 0.666667 NA intron (NM_001348801, intron 4 of 11) intron (NM_001348801, intron 4 of 11) 29277 NR_039959 100616166 NR_039959 ENSG00000264623 MIR4796 mir-4796 microRNA 4796 ncRNA 127-87 chr6 108219257 108219546 + 0.666667 NA intron (NM_152827, intron 1 of 2) AluJr4|SINE|Alu 41639 NM_152827 8724 Hs.12102 NM_003795 ENSG00000112335 SNX3 Grd19|MCOPS8|SDP3 sorting nexin 3 protein-coding 217.333-44 chr9 68633270 68633613 + 0.666667 NA Intergenic MER3|DNA|hAT-Charlie -71799 NM_003558 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 121.667-51 chr19 13536253 13536572 + 0.666667 NA Intergenic MER2|DNA|TcMar-Tigger -29933 NM_000068 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 125.667-64 chr2 160304490 160304719 + 0.666667 NA intron (NM_002897, intron 4 of 13) Tigger3b|DNA|TcMar-Tigger -32709 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000285373 LINC02478 - long intergenic non-protein coding RNA 2478 ncRNA 132.333-48 chr18 64562042 64562372 + 0.666667 NA Intergenic Intergenic -302152 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 222.667-23 chr2 121083410 121083797 + 0.666667 NA Intergenic MIR|SINE|MIR 201599 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 182.5-28 chr3 42687687 42688092 + 0.666667 NA intron (NM_152393, intron 1 of 5) intron (NM_152393, intron 1 of 5) 2352 NM_152393 131377 Hs.350288 NM_152393 ENSG00000157119 KLHL40 KBTBD5|NEM8|SRYP|SYRP kelch like family member 40 protein-coding 134.667-57 chr21 28465269 28465550 + 0.666667 NA Intergenic Intergenic -73909 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 133-81 chr6 125722248 125722556 + 0.666667 NA Intergenic AluSp|SINE|Alu -27230 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 218.5-21 chr2 191336749 191337292 + 0.666667 NA intron (NM_012223, intron 4 of 28) intron (NM_012223, intron 4 of 28) 91616 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 148.667-65 chr5 88304771 88305218 + 0.666667 NA intron (NR_105019, intron 6 of 7) intron (NR_105019, intron 6 of 7) 35978 NR_105019 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 121.333-32 chr16 8267714 8267926 + 0.666667 NA Intergenic L1PB1|LINE|L1 322018 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 200.833-27 chr5 9361349 9361832 + 0.666667 NA intron (NM_003966, intron 3 of 22) intron (NM_003966, intron 3 of 22) -149743 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 242.167-14 chr3 73928573 73929226 + 0.666667 NA Intergenic L1PA13|LINE|L1 119655 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 132.5-55 chr20 38282823 38283132 + 0.666667 NA intron (NR_104170, intron 1 of 1) MER39B|LTR|ERV1 -21173 NM_001725 671 Hs.529019 NM_001725 ENSG00000101425 BPI BPIFD1|rBPI bactericidal permeability increasing protein protein-coding 234-15 chr16 72646009 72646574 + 0.666667 NA intron (NR_159372, intron 1 of 7) L1MC1|LINE|L1 18679 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 187.333-70 chr6 44927645 44928119 + 0.666667 NA intron (NM_001350324, intron 10 of 11) intron (NM_001350324, intron 10 of 11) 269888 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 196-66 chr9 24299421 24299835 + 0.666667 NA Intergenic LTR104_Mam|LTR|Gypsy 246048 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 119.667-35 chr18 74309168 74309455 + 0.666667 NA Intergenic Intergenic -6528 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 146.5-88 chr8 89340301 89340584 + 0.666667 NA Intergenic L1MA2|LINE|L1 417269 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 119.167-18 chr13 94202564 94202877 + 0.666667 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) -14729 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 198.333-31 chr3 103401317 103402026 + 0.666667 NA Intergenic Intergenic 122445 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 131.333-25 chr13 110616931 110617154 + 0.666667 NA intron (NM_018210, intron 1 of 9) intron (NM_018210, intron 1 of 9) 1458 NM_018210 55739 Hs.408324 NM_018210 ENSG00000213995 NAXD CARKD|LP3298|PEBEL2 NAD(P)HX dehydratase protein-coding 150.833-31 chr4 61166049 61166350 + 0.666667 NA Intergenic Intergenic 22543 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 158.834-3 chr3 59329554 59330068 + 0.666667 NA Intergenic Intergenic -279779 NM_001351533 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 156.333-59 chr22 45766268 45766523 + 0.666667 NA intron (NM_013236, intron 9 of 11) MER1B|DNA|hAT-Charlie 5871 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 281.667-10 chr18 2865995 2866683 + 0.666667 NA intron (NM_032048, intron 2 of 7) L1PA4|LINE|L1 19333 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 123.333-55 chr2 144171645 144172027 + 0.666667 NA intron (NM_001284234, intron 2 of 9) L5|LINE|RTE-X 39743 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 152-6 chr1 175096714 175097029 + 0.666667 NA intron (NM_022093, intron 7 of 18) intron (NM_022093, intron 7 of 18) 29038 NM_022093 63923 Hs.156369 NM_022093 ENSG00000120332 TNN TN-W tenascin N protein-coding 184.167-44 chr7 13383948 13384359 + 0.666667 NA Intergenic LTR105_Mam|LTR|ERVL 602361 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 152.5-51 chr5 41863885 41864283 + 0.666667 NA intron (NR_157114, intron 1 of 15) intron (NR_157114, intron 1 of 15) -5946 NR_046635 100874002 Hs.375537 NR_046635 ENSG00000248668 OXCT1-AS1 - OXCT1 antisense RNA 1 ncRNA 170.5-48 chr3 188952880 188953298 + 0.666667 NA Intergenic Intergenic -5450 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 218.667-14 chr17 69021554 69022011 + 0.666667 NA exon (NM_080283, exon 18 of 39) exon (NM_080283, exon 18 of 39) 17068 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 227.833-20 chr5 83194553 83195150 + 0.666667 NA intron (NM_001318012, intron 3 of 7) MIR|SINE|MIR 117304 NM_001318012 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 168-66 chr6 18585725 18586014 + 0.666667 NA intron (NR_149116, intron 3 of 7) intron (NR_149116, intron 3 of 7) 14085 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 166.833-31 chr5 60293624 60293939 + 0.666667 NA intron (NM_001364599, intron 1 of 16) L1ME2|LINE|L1 78882 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 170.833 chr1 118808867 118809180 + 0.666667 NA Intergenic Intergenic 179320 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 290.167-10 chr5 13532174 13532643 + 0.666667 NA Intergenic Intergenic 412072 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 189.667-29 chr2 177959262 177959680 + 0.666667 NA intron (NM_001077197, intron 3 of 20) L2a|LINE|L2 -36634 NM_001077358 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 152.833-53 chr5 10369360 10369742 + 0.666667 NA intron (NM_001270661, intron 1 of 22) L1ME1|LINE|L1 15856 NM_001270660 10299 Hs.432862 NM_005885 ENSG00000145495 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane associated ring-CH-type finger 6 protein-coding 204-24 chr3 68856708 68857104 + 0.666667 NA intron (NM_001005527, intron 3 of 5) MIRb|SINE|MIR 75641 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 207.5-33 chr7 37591773 37592385 + 0.666667 NA Intergenic Intergenic -91687 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 129-39 chr2 18561116 18561413 + 0.666667 NA promoter-TSS (NM_020905) promoter-TSS (NM_020905) -611 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 145.5-17 chr13 20208934 20209243 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -16150 NM_004004 2706 Hs.524894 NM_004004 ENSG00000165474 GJB2 CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK gap junction protein beta 2 protein-coding 114.833-62 chr6 71708111 71708499 + 0.666667 NA Intergenic Intergenic -178398 NM_014989 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 139.833-34 chr18 2894777 2895009 + 0.666667 NA intron (NM_032048, intron 4 of 7) L2c|LINE|L2 47887 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 114.333-16 chr10 85172856 85173042 + 0.666667 NA Intergenic Intergenic 25956 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 129.667-14 chr11 60271519 60271734 + 0.666667 NA Intergenic L1PA15|LINE|L1 -9040 NM_148975 51338 Hs.325960 NM_024021 ENSG00000110079 MS4A4A 4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 membrane spanning 4-domains A4A protein-coding 179-12 chr14 59469802 59470118 + 0.666667 NA Intergenic Intergenic -4580 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 119.667-81 chr5 95165162 95165597 + 0.666667 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) -83513 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 126.667-27 chr16 65002503 65002878 + 0.666667 NA intron (NM_001330576, intron 2 of 11) intron (NM_001330576, intron 2 of 11) 119373 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 120.667-82 chr3 150780449 150780708 + 0.666667 NA Intergenic Intergenic -17409 NM_005067 6478 Hs.477959 NM_005067 ENSG00000181788 SIAH2 hSiah2 siah E3 ubiquitin protein ligase 2 protein-coding 131.5-51 chr3 131091428 131091886 + 0.666667 NA intron (NM_001353043, intron 4 of 17) intron (NM_001353043, intron 4 of 17) 63929 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 138.333-71 chr3 36073777 36074303 + 0.666667 NA Intergenic L1PA10|LINE|L1 -306447 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 181.667-70 chr8 127376831 127377128 + 0.666667 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -23420 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 201.167-24 chr5 95571630 95572041 + 0.666667 NA intron (NM_198150, intron 3 of 7) intron (NM_198150, intron 3 of 7) 16734 NM_198150 153642 Hs.585051 NM_198150 ENSG00000164291 ARSK TSULF arylsulfatase family member K protein-coding 141.834-4 chr2 192448901 192449475 + 0.666667 NA Intergenic Intergenic -254255 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 118-79 chr3 181623109 181623419 + 0.666667 NA intron (NR_075090, intron 2 of 2) AluJo|SINE|Alu 12930 NR_075090 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 130.833-61 chr6 65566210 65566771 + 0.666667 NA intron (NM_001292009, intron 2 of 43) MER50C|LTR|ERV1 13314 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 161.333-71 chr7 67793404 67793882 + 0.666667 NA Intergenic Intergenic -226610 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 124-81 chr6 81831587 81831908 + 0.666667 NA Intergenic Intergenic -17555 NR_126363 101928770 Hs.586239 NR_126363 ENSG00000224995 LINC01526 Lnc-FAM46A-1 long intergenic non-protein coding RNA 1526 ncRNA 142.5-50 chr3 133009150 133009476 + 0.666667 NA Intergenic MSTA|LTR|ERVL-MaLR -28975 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 246.167-20 chr3 190729306 190729773 + 0.666667 NA Intergenic Intergenic 133155 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 149-75 chr9 69784729 69784989 + 0.666667 NA Intergenic L1M4|LINE|L1 -24848 NM_001366938 375743 Hs.744192 NM_001099666 ENSG00000188647 PTAR1 - protein prenyltransferase alpha subunit repeat containing 1 protein-coding 144.667-76 chr4 162354721 162355098 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -190875 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 130.167-73 chr8 16757886 16758093 + 0.666667 NA Intergenic Intergenic 244356 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 152.833-35 chr2 171349199 171349617 + 0.666667 NA intron (NM_001321158, intron 2 of 8) L1MB2|LINE|L1 84582 NM_001321156 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 120-34 chr14 52289835 52290055 + 0.666667 NA Intergenic Helitron3Na_Mam|RC|Helitron 22247 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 240.833-14 chr2 54033809 54034443 + 0.666667 NA intron (NM_001320587, intron 2 of 5) AluSx1|SINE|Alu 63013 NM_001320586 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 191-49 chr5 143010451 143010966 + 0.666667 NA intron (NR_146198, intron 11 of 22) intron (NR_146198, intron 11 of 22) -141798 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 121.833-48 chr3 187927784 187928184 + 0.666667 NA Intergenic MER63B|DNA|hAT-Blackjack 48423 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 135.167-33 chr15 57541132 57541603 + 0.666667 NA intron (NM_032866, intron 14 of 18) intron (NM_032866, intron 14 of 18) -50537 NR_104371 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 119.5-88 chr6 56945424 56945828 + 0.666667 NA intron (NM_001144769, intron 2 of 96) L2b|LINE|L2 9204 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 136.667-2 chr1 113036973 113037327 + 0.666667 NA intron (NR_103777, intron 2 of 2) intron (NR_103777, intron 2 of 2) 35952 NR_103777 100996251 Hs.382067 NR_103777 ENSG00000238198 LRIG2-DT - LRIG2 divergent transcript ncRNA 140-12 chr10 113858031 113858264 + 0.666667 NA intron (NM_198514, intron 1 of 10) intron (NM_198514, intron 1 of 10) 3486 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 230.167-9 chr18 34125698 34126111 + 0.666667 NA intron (NM_001353232, intron 2 of 9) intron (NM_001353232, intron 2 of 9) -77292 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 202.5-15 chr2 162409398 162409856 + 0.666667 NA intron (NM_033272, intron 9 of 15) L1PA16|LINE|L1 65259 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 144.5-39 chr2 11777455 11777706 + 0.666667 NA intron (NM_001349203, intron 6 of 20) MER58A|DNA|hAT-Charlie 10136 NR_036071 100422862 NR_036071 ENSG00000265056 MIR548S - microRNA 548s ncRNA 240.667-27 chr3 158591795 158592521 + 0.666667 NA intron (NM_001369784, intron 2 of 7) MER47A|DNA|TcMar-Tigger 20964 NM_001195433 4291 Hs.85195 NM_022443 ENSG00000178053 MLF1 - myeloid leukemia factor 1 protein-coding 129.667-54 chr2 145063822 145064073 + 0.666667 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 395980 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 200-52 chr4 97092443 97092894 + 0.666667 NA Intergenic L1MA4|LINE|L1 -274258 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 156.333-97 chrX 26937069 26937389 + 0.666667 NA Intergenic Intergenic 378892 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 167.833-39 chr3 131562080 131562471 + 0.666667 NA intron (NM_130808, intron 11 of 15) intron (NM_130808, intron 11 of 15) -59304 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 169.5-8 chr11 26120972 26121326 + 0.666667 NA Intergenic Intergenic -67974 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 222.167-21 chr2 11526480 11527064 + 0.666667 NA Intergenic AluSx1|SINE|Alu -7273 NM_014668 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 115.667-119 chr8 131616143 131616463 + 0.666667 NA Intergenic AluJo|SINE|Alu -287790 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 227.167-2 chr1 118814065 118814562 + 0.666667 NA Intergenic Intergenic 174030 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 143.667-56 chr2 53261031 53261405 + 0.666667 NA Intergenic Intergenic -506565 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 239.333-13 chr2 177334049 177334498 + 0.666667 NA intron (NR_026966, intron 3 of 8) intron (NR_026966, intron 3 of 8) -20391 NR_106767 102465255 NR_106767 ENSG00000278418 MIR6512 hsa-mir-6512|mir-6512 microRNA 6512 ncRNA 120.833-66 chr7 121332646 121333103 + 0.666667 NA intron (NM_016087, intron 3 of 3) intron (NM_016087, intron 3 of 3) 3874 NM_057168 51384 Hs.272375 NM_016087 ENSG00000002745 WNT16 - Wnt family member 16 protein-coding 211-28 chr4 66611974 66612704 + 0.666667 NA Intergenic Intergenic 335515 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 167-37 chr22 25313427 25313849 + 0.666667 NA Intergenic Intergenic -4619 NR_029395 91353 Hs.651077 NM_001013618 IGLL3P 16.1|IGLL3 immunoglobulin lambda like polypeptide 3, pseudogene pseudo 210.333-42 chr8 121195973 121196408 + 0.666667 NA Intergenic MLT1H|LTR|ERVL-MaLR -384144 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 158-20 chr15 51279971 51280327 + 0.666667 NA intron (NR_146310, intron 2 of 2) AluY|SINE|Alu -2007 NM_001347252 1588 Hs.260074 NM_000103 ENSG00000137869 CYP19A1 ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM cytochrome P450 family 19 subfamily A member 1 protein-coding 145.333-23 chr14 26410521 26410903 + 0.666667 NA Intergenic L3b|LINE|CR1 142718 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 227.167-28 chr6 129913148 129913794 + 0.666667 NA Intergenic AluSx1|SINE|Alu -52156 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 156.833-49 chr6 40043767 40044203 + 0.666667 NA Intergenic L1PA10|LINE|L1 -109523 NM_001358531 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 137.5-77 chr4 136839544 136840134 + 0.666667 NA intron (NR_149105, intron 3 of 3) MLT1F1|LTR|ERVL-MaLR -353917 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 255-12 chr2 75617930 75618379 + 0.666667 NA Intergenic Intergenic -28629 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 117.833-63 chr5 59435819 59436099 + 0.666667 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) -78989 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 157.167-43 chr4 33259137 33259593 + 0.666667 NA Intergenic Intergenic 780528 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 129.167-56 chr4 172703850 172704350 + 0.666667 NA intron (NR_125894, intron 1 of 2) L1M3f|LINE|L1 -15183 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 205.167-30 chr4 62985263 62985618 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -823675 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 217.667-36 chr5 112060132 112060790 + 0.666667 NA Intergenic Intergenic -83529 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 223.333-7 chr10 96906123 96906640 + 0.666667 NA intron (NM_001170766, intron 2 of 8) Charlie23a|DNA|hAT-Charlie 73436 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 143.334-6 chr8 27211128 27211765 + 0.666667 NA Intergenic AluSx|SINE|Alu 46958 NM_001283054 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 156.833-44 chr5 30149618 30150115 + 0.666667 NA Intergenic Intergenic 269306 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 160.833-47 chr9 15230366 15230820 + 0.666667 NA intron (NM_001168340, intron 2 of 18) L1MB8|LINE|L1 19625 NM_001168342 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 191.833-12 chr2 35113141 35113550 + 0.666667 NA Intergenic L1M2|LINE|L1 -358060 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 167.5-55 chr6 129792211 129792557 + 0.666667 NA Intergenic Intergenic 68931 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 137.333-24 chr14 39848929 39849239 + 0.666667 NA Intergenic MER5A1|DNA|hAT-Charlie -416584 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 114.833-57 chr5 166147903 166148141 + 0.666667 NA Intergenic L1MA5|LINE|L1 778348 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 125.833-3 chr1 155142098 155142424 + 0.666667 NA Intergenic FLAM_A|SINE|Alu -1730 NM_153741 54344 Hs.110477 NM_018973 ENSG00000179085 DPM3 CDG1O dolichyl-phosphate mannosyltransferase subunit 3, regulatory protein-coding 139.5-58 chr6 37071443 37071983 + 0.666667 NA Intergenic Intergenic 66058 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 126.833-50 chr5 20991959 20992271 + 0.666667 NA Intergenic L1PA16|LINE|L1 -376580 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 193.833-16 chr14 71526228 71526743 + 0.666667 NA intron (NM_001354286, intron 4 of 24) L1ME3A|LINE|L1 38624 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 184.667-19 chr14 57453280 57453602 + 0.666667 NA Intergenic MER8|DNA|TcMar-Tigger 40416 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 180.667-21 chr14 48064668 48065233 + 0.666667 NA Intergenic L1MCa|LINE|L1 -269936 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 124.833-16 chr12 14385411 14385762 + 0.666667 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 305 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 295-4 chr4 157278321 157278889 + 0.666667 NA intron (NM_001083620, intron 2 of 15) L1MC1|LINE|L1 57877 NM_000826 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 133.5-79 chr8 50176412 50176660 + 0.666667 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 12405 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 166.5-22 chr16 83032037 83032658 + 0.666667 NA intron (NM_001220489, intron 3 of 12) MLT1K|LTR|ERVL-MaLR -42049 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 250.5-25 chr9 9908849 9909567 + 0.666667 NA intron (NM_002839, intron 5 of 45) intron (NM_002839, intron 5 of 45) 109816 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 189.667-10 chr12 16815368 16815783 + 0.666667 NA Intergenic L1MA9|LINE|L1 -173172 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 175.333-54 chr5 133284788 133285098 + 0.666667 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 142763 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 160.333-41 chr4 26305067 26305524 + 0.666667 NA Intergenic L1MB8|LINE|L1 -14415 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 122-92 chr9 68997931 68998231 + 0.666667 NA intron (NM_003558, intron 15 of 15) AluSz|SINE|Alu 16042 NM_002732 5568 Hs.158029 NM_002732 ENSG00000165059 PRKACG BDPLT19|KAPG|PKACg protein kinase cAMP-activated catalytic subunit gamma protein-coding 176.5-65 chr8 104316880 104317260 + 0.666667 NA Intergenic Intergenic -22726 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 115.667-70 chr21 29538470 29538750 + 0.666667 NA intron (NM_001330993, intron 15 of 16) intron (NM_001330993, intron 15 of 16) 42563 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 178.667-44 chr3 191130461 191130832 + 0.666667 NA Intergenic Intergenic -68595 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 129.333-60 chr3 50808469 50808774 + 0.666667 NA intron (NM_004947, intron 2 of 52) intron (NM_004947, intron 2 of 52) 133541 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 159.167-46 chr4 44992456 44993050 + 0.666667 NA Intergenic MER50-int|LTR|ERV1 -266119 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 205.333-50 chr5 134938008 134938428 + 0.666667 NA intron (NM_032151, intron 2 of 3) intron (NM_032151, intron 2 of 3) -29689 NM_178019 347732 Hs.631804 NM_178019 ENSG00000152705 CATSPER3 CACRC cation channel sperm associated 3 protein-coding 158.5-61 chr5 13805591 13806085 + 0.666667 NA intron (NM_001369, intron 47 of 78) MER21C|LTR|ERVL 138642 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 134.5-58 chr4 94273765 94274268 + 0.666667 NA intron (NM_001128429, intron 12 of 23) intron (NM_001128429, intron 12 of 23) 20707 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 115.667-41 chr18 66283339 66283611 + 0.666667 NA Intergenic Intergenic 320615 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 234.5-14 chr2 124466542 124466976 + 0.666667 NA intron (NM_130773, intron 6 of 23) intron (NM_130773, intron 6 of 23) 441472 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 198-2 chr1 41981175 41981539 + 0.666667 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) 54577 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 160-34 chr16 30856676 30857059 + 0.666667 NA intron (NM_001286526, intron 5 of 5) L1M4|LINE|L1 18456 NR_039744 100616231 NR_039744 ENSG00000265991 MIR4519 - microRNA 4519 ncRNA 141.167-2 chr1 104929092 104929471 + 0.666667 NA Intergenic LTR49-int|LTR|ERV1 689654 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 150.667-4 chr1 84073300 84073660 + 0.666667 NA Intergenic Intergenic -4495 NM_002731 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 144.667-9 chr1 186796309 186796803 + 0.666667 NA Intergenic (AGAAT)n|Simple_repeat|Simple_repeat -32344 NM_024420 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 125.333-8 chr1 172977190 172977498 + 0.666667 NA Intergenic L2b|LINE|L2 73619 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 157-62 chr5 7218589 7218880 + 0.666667 NA Intergenic Intergenic 50620 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 181.333-9 chr11 43314612 43314997 + 0.666667 NA intron (NM_001142931, intron 1 of 12) intron (NM_001142931, intron 1 of 12) 2808 NM_001243747 8539 Hs.435771 NM_006595 ENSG00000166181 API5 AAC-11|AAC11 apoptosis inhibitor 5 protein-coding 286.5-18 chr8 117929155 117929884 + 0.666667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -8606 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 125.167-46 chr2 206920920 206921227 + 0.666667 NA Intergenic Intergenic -18445 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 144.5-45 chr2 81506714 81506976 + 0.666667 NA Intergenic Intergenic -39899 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 154.333-33 chr18 3601266 3601593 + 0.666667 NA intron (NM_001242761, intron 7 of 11) intron (NM_001242761, intron 7 of 11) -2308 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 157.333-8 chr10 15960775 15961104 + 0.666667 NA Intergenic Intergenic -100406 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 195.666-5 chr20 35708495 35709065 + 0.666667 NA intron (NR_040722, intron 14 of 17) intron (NR_040722, intron 14 of 17) 9375 NM_080748 140823 Hs.472564 NM_080748 ENSG00000125995 ROMO1 C20orf52|MTGM|MTGMP|bA353C18.2 reactive oxygen species modulator 1 protein-coding 188.833-11 chr12 13149567 13149921 + 0.666667 NA Intergenic MIRb|SINE|MIR -46077 NM_001367364 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 198-30 chr2 153319224 153319756 + 0.666667 NA Intergenic AluJr|SINE|Alu 159272 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 192-50 chr8 28539811 28540247 + 0.666667 NA intron (NM_017412, intron 5 of 7) intron (NM_017412, intron 5 of 7) -34847 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 117-52 chr2 140474933 140475220 + 0.666667 NA intron (NM_018557, intron 60 of 90) intron (NM_018557, intron 60 of 90) 111609 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 159.333-65 chr5 104642066 104642478 + 0.666667 NA Intergenic MLT1K|LTR|ERVL-MaLR -457202 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 210.667-5 chr10 78845370 78845777 + 0.666667 NA Intergenic Intergenic 221875 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 166.833-30 chr5 11796846 11797414 + 0.666667 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 107316 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 152.333-34 chr2 101623505 101623915 + 0.666667 NA Intergenic Intergenic -73993 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 122.333-120 chr9 34974103 34974515 + 0.666667 NA intron (NM_015297, intron 3 of 7) L2|LINE|L2 15070 NR_109756 101926900 Hs.545814 NR_109756 ENSG00000281491 DNAJB5-DT DNAJB5-AS1 DNAJB5 divergent transcript ncRNA 113.667-99 chr5 33079025 33079206 + 0.666667 NA Intergenic AluSx1|SINE|Alu 131672 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 134.333-9 chr10 13372379 13372674 + 0.666667 NA Intergenic L1PA16|LINE|L1 -24228 NM_001195602 22929 Hs.124027 NM_012247 ENSG00000086475 SEPHS1 SELD|SPS|SPS1 selenophosphate synthetase 1 protein-coding 179.333-6 chr10 57962367 57962785 + 0.666667 NA Intergenic MIR|SINE|MIR 305318 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 135.167-77 chr5 105067496 105067947 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR -31753 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 229.167-15 chr15 82662556 82663146 + 0.666667 NA promoter-TSS (NM_001348441) promoter-TSS (NM_001348441) -176 NM_001348441 8120 Hs.199593 NM_004644 ENSG00000103723 AP3B2 EIEE48|NAPTB adaptor related protein complex 3 subunit beta 2 protein-coding 145-64 chr4 173809668 173809984 + 0.666667 NA Intergenic Intergenic -87447 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 143.167-75 chr7 14338369 14338618 + 0.666667 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -347068 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 190.333-27 chr18 9367251 9367637 + 0.666667 NA intron (NM_020648, intron 3 of 4) L1MA8|LINE|L1 32671 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 124.333-24 chr13 79993819 79994189 + 0.666667 NA Intergenic Intergenic -17073 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 191-55 chr9 106102696 106103016 + 0.666667 NA Intergenic Intergenic 408315 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 150-86 chr9 26356142 26356482 + 0.666667 NA Intergenic Intergenic 289637 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 125.333-47 chr14 80787347 80787822 + 0.666667 NA intron (NM_152446, intron 14 of 24) MLT1E2|LTR|ERVL-MaLR 154154 NR_157142 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 164-41 chr3 129786955 129787576 + 0.666667 NA intron (NM_001349271, intron 2 of 4) intron (NM_001349271, intron 2 of 4) 7347 NM_001349273 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 151.333-58 chr22 28268085 28268643 + 0.666667 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -191505 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 177-61 chr6 52336401 52336693 + 0.666667 NA Intergenic Intergenic -25604 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 184-54 chr5 133208522 133208870 + 0.666667 NA intron (NM_015082, intron 14 of 15) AluSx|SINE|Alu 156683 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 235.5-14 chr16 21723695 21724487 + 0.666667 NA intron (NM_170664, intron 8 of 18) intron (NM_170664, intron 8 of 18) -5480 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 184-28 chr2 203025192 203025638 + 0.666667 NA intron (NM_001114132, intron 2 of 54) intron (NM_001114132, intron 2 of 54) 10536 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 130-85 chr5 106953442 106953689 + 0.666667 NA intron (NR_104671, intron 2 of 3) Charlie7|DNA|hAT-Charlie 57449 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 316-3 chr20 59927221 59927704 + 0.666667 NA intron (NM_014258, intron 2 of 44) intron (NM_014258, intron 2 of 44) 6175 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 145.167-39 chr20 54666450 54667061 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR 191162 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 168.834-3 chr2 104838309 104838877 + 0.666667 NA intron (NR_037883, intron 1 of 3) intron (NR_037883, intron 1 of 3) 12883 NR_131234 100506421 Hs.437281 NR_037883 ENSG00000233639 PANTR1 LINC01158|linc-Brn1a|linc-POU3F3 POU3F3 adjacent non-coding transcript 1 ncRNA 200.833-35 chr8 64576746 64577320 + 0.666667 NA non-coding (NR_015374, exon 1 of 2) non-coding (NR_015374, exon 1 of 2) 230 NR_015374 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 123.167-71 chr4 60829831 60830142 + 0.666667 NA Intergenic Intergenic -92633 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 219.334-6 chr2 155385745 155386351 + 0.666667 NA Intergenic Intergenic 687353 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 171.333-8 chr1 200113849 200114298 + 0.666667 NA intron (NM_205860, intron 6 of 7) AluSz|SINE|Alu 71248 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 127-92 chr7 78982949 78983254 + 0.666667 NA intron (NM_001301128, intron 2 of 20) MER33|DNA|hAT-Charlie -25887 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 136.667-36 chr18 31404226 31404583 + 0.666667 NA intron (NM_001134453, intron 11 of 14) intron (NM_001134453, intron 11 of 14) 22584 NR_110788 101927718 Hs.625473 NR_110788 ENSG00000266729 DSG1-AS1 - DSG1 antisense RNA 1 ncRNA 206-39 chrX 41490628 41490954 + 0.666667 NA Intergenic AluSq2|SINE|Alu 43331 NM_022567 60506 Hs.302019 NM_022567 ENSG00000188937 NYX CLRP|CSNB1|CSNB1A|CSNB4|NBM1 nyctalopin protein-coding 183.667-36 chr2 52816260 52816621 + 0.666667 NA Intergenic L1MB7|LINE|L1 -113825 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 229-42 chr7 36675399 36675887 + 0.666667 NA intron (NM_001177507, intron 1 of 19) L1MB7|LINE|L1 48851 NM_001637 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 148.333-64 chr3 85353449 85353734 + 0.666667 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -32119 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 114.167-28 chr13 66331857 66332078 + 0.666667 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 113717 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 255.333-17 chr4 61384364 61384923 + 0.666667 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 182471 NM_001371342 184.666-4 chr21 30354858 30355410 + 0.666667 NA Intergenic Intergenic -6528 NM_181624 337963 Hs.553688 NM_181624 ENSG00000186980 KRTAP23-1 KAP23.1 keratin associated protein 23-1 protein-coding 162.5-59 chr5 52053846 52054140 + 0.666667 NA Intergenic L1MD2|LINE|L1 45962 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 177.167 chr1 55262197 55262731 + 0.666667 NA Intergenic Intergenic 36823 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 124.333-45 chr2 56450455 56450785 + 0.666667 NA Intergenic MER67D|LTR|ERV1 -264850 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 198.667-19 chr14 74591870 74592410 + 0.666667 NA intron (NM_000428, intron 2 of 35) Tigger11a|DNA|TcMar-Tigger 20097 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 121.667-7 chr1 197540493 197540712 + 0.666667 NA intron (NR_125340, intron 16 of 19) intron (NR_125340, intron 16 of 19) 234878 NM_001300858 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 199.333-21 chr2 79057547 79058085 + 0.666667 NA Intergenic L1MC4a|LINE|L1 30177 NM_006507 5968 Hs.4158 NM_006507 ENSG00000172023 REG1B PSPS2|REGH|REGI-BETA|REGL regenerating family member 1 beta protein-coding 170.5-13 chr11 110079600 110079948 + 0.666667 NA Intergenic Intergenic -13618 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 201-25 chr22 28369483 28369872 + 0.666667 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -90192 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 131.333-36 chr17 2377909 2378178 + 0.666667 NA intron (NM_001346700, intron 21 of 22) MER5B|DNA|hAT-Charlie 23017 NM_020310 4335 Hs.626579 NM_020310 ENSG00000070444 MNT MAD6|MXD6|ROX|bHLHd3 MAX network transcriptional repressor protein-coding 188-48 chr5 67641826 67642186 + 0.666667 NA intron (NR_147169, intron 1 of 2) L1MA7|LINE|L1 4783 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 187.333-32 chr2 38517131 38517621 + 0.666667 NA Intergenic Intergenic -1636 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 167.667-2 chr1 51355208 51355644 + 0.666667 NA 3' UTR (NM_001981, exon 25 of 25) 3' UTR (NM_001981, exon 25 of 25) -10310 NM_001144832 22996 Hs.112949 NM_001080494 ENSG00000085831 TTC39A C1orf34|DEME-6 tetratricopeptide repeat domain 39A protein-coding 127.167-75 chr6 21200595 21200808 + 0.666667 NA intron (NM_017774, intron 14 of 15) intron (NM_017774, intron 14 of 15) 311191 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 119-40 chr16 75368539 75368773 + 0.666667 NA intron (NM_006324, intron 5 of 6) L1MC5a|LINE|L1 64847 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 159.167-51 chr5 17808960 17809503 + 0.666667 NA intron (NR_134286, intron 1 of 7) intron (NR_134286, intron 1 of 7) 1957 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 167.667-35 chr17 78139160 78139442 + 0.666667 NA intron (NM_152468, intron 15 of 15) intron (NM_152468, intron 15 of 15) -6874 NM_007267 11322 Hs.632227 NM_007267 ENSG00000141524 TMC6 EV1|EVER1|EVIN1|LAK-4P transmembrane channel like 6 protein-coding 125.167-84 chr8 126214590 126214812 + 0.666667 NA Intergenic Intergenic -110794 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 165.333-43 chr4 95913643 95913957 + 0.666667 NA Intergenic Intergenic 73707 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 121.333-43 chr2 13624108 13624348 + 0.666667 NA Intergenic L1MD2|LINE|L1 -617215 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 156.167 chr1 52700195 52700681 + 0.666667 NA Intergenic Intergenic -2091 NM_023077 65260 Hs.349905 NM_023077 ENSG00000162377 COA7 C1orf163|RESA1|SCAN3|SELRC1 cytochrome c oxidase assembly factor 7 (putative) protein-coding 178.333-35 chr3 133088372 133088740 + 0.666667 NA intron (NM_001136469, intron 2 of 5) intron (NM_001136469, intron 2 of 5) -36265 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 178.667-43 chr3 190740581 190741046 + 0.666667 NA Intergenic Intergenic 121881 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 137-34 chr14 62437332 62437738 + 0.666667 NA Intergenic L1M2a|LINE|L1 -297562 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 187.333-22 chr16 22082911 22083606 + 0.666667 NA 3' UTR (NM_001164579, exon 3 of 3) 3' UTR (NM_001164579, exon 3 of 3) -9283 NM_173615 146177 Hs.10697 NM_173615 ENSG00000175267 VWA3A - von Willebrand factor A domain containing 3A protein-coding 126-39 chr19 38369544 38369898 + 0.666667 NA intron (NM_001330496, intron 25 of 27) intron (NM_001330496, intron 25 of 27) -4829 NM_002812 5714 Hs.78466 NM_002812 ENSG00000099341 PSMD8 HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31 proteasome 26S subunit, non-ATPase 8 protein-coding 123.667-43 chr18 12015818 12016089 + 0.666667 NA intron (NM_014214, intron 5 of 7) intron (NM_014214, intron 5 of 7) 34446 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol monophosphatase 2 protein-coding 312.333-10 chr5 13292584 13293568 + 0.666667 NA Intergenic L1ME1|LINE|L1 -260190 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 141.333-36 chr15 40527481 40527983 + 0.666667 NA Intergenic MSTC|LTR|ERVL-MaLR 4818 NR_002208 359821 Hs.678598 NR_002208 MRPL42P5 - mitochondrial ribosomal protein L42 pseudogene 5 pseudo 142.667-73 chr4 98672206 98672532 + 0.666667 NA Intergenic Intergenic 13467 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 135.833-20 chr15 60900066 60900417 + 0.666667 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 218672 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 306.333-7 chr6 153363402 153364129 + 0.666667 NA Intergenic L1ME1|LINE|L1 -232483 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 168.667-62 chr5 7246377 7246700 + 0.666667 NA Intergenic Intergenic 22816 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 156.167-12 chr11 45791945 45792182 + 0.666667 NA Intergenic MLT1H|LTR|ERVL-MaLR -12009 NM_001145266 55343 Hs.12211 NM_018389 ENSG00000181830 SLC35C1 CDG2C|FUCT1 solute carrier family 35 member C1 protein-coding 164.833-22 chr2 23331967 23332324 + 0.666667 NA Intergenic Intergenic -53034 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 116.5-27 chr17 53322019 53322428 + 0.666667 NA Intergenic L1MC1|LINE|L1 336718 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 183.833-27 chr2 231158691 231159205 + 0.666667 NA intron (NM_001191037, intron 19 of 23) intron (NM_001191037, intron 19 of 23) -33906 NM_000867 3357 Hs.421649 NM_000867 ENSG00000135914 HTR2B 5-HT(2B)|5-HT-2B|5-HT2B 5-hydroxytryptamine receptor 2B protein-coding 201-8 chr10 21880086 21880830 + 0.666667 NA intron (NM_022365, intron 8 of 11) Tigger1|DNA|TcMar-Tigger 123272 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 136.334-5 chr20 32027585 32028111 + 0.666667 NA intron (NM_001365692, intron 7 of 9) L2b|LINE|L2 17410 NM_001365692 140706 Hs.382151 NM_080625 ENSG00000101331 CCM2L C20orf160|dJ310O13.5 CCM2 like scaffold protein protein-coding 152.833-33 chr2 136792599 136793075 + 0.666667 NA intron (NM_001316349, intron 1 of 27) L1ME1|LINE|L1 27292 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 186-21 chr2 11996356 11996820 + 0.666667 NA Intergenic Intergenic -10528 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 125.667-86 chr4 62431124 62431364 + 0.666667 NA Intergenic Intergenic -269479 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 160.5-49 chr5 167483145 167483410 + 0.666667 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -90382 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 151.333-59 chr22 28521221 28521486 + 0.666667 NA intron (NM_001145418, intron 2 of 22) AluJr|SINE|Alu 61484 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 141-58 chr3 58152162 58152563 + 0.666667 NA intron (NM_001164318, intron 38 of 45) MLT1A|LTR|ERVL-MaLR 18273 NR_135534 105377105 Hs.613914 NR_135534 ENSG00000244161 FLNB-AS1 - FLNB antisense RNA 1 ncRNA 221.5-5 chr10 81209620 81210101 + 0.666667 NA Intergenic L1M4c|LINE|L1 560063 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 115.667-25 chr12 42520665 42520907 + 0.666667 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) -36776 NM_001144882 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 141.667-49 chr2 127085108 127085490 + 0.666667 NA promoter-TSS (NM_001320642) promoter-TSS (NM_001320642) -749 NM_001320642 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 182.833-16 chr14 32609686 32610007 + 0.666667 NA intron (NM_004274, intron 7 of 13) intron (NM_004274, intron 7 of 13) 280548 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 187-24 chr21 14255112 14255440 + 0.666667 NA Intergenic L1MC|LINE|L1 -18523 NR_003087 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 131.667-35 chr14 70185343 70185637 + 0.666667 NA intron (NM_033262, intron 1 of 7) intron (NM_033262, intron 1 of 7) -1618 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 114.167-75 chr5 2126546 2126740 + 0.666667 NA Intergenic Intergenic 185558 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 177.833-4 chr11 113281054 113281413 + 0.666667 NA Intergenic L2a|LINE|L2 -7332 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 117.5-78 chr9 133881567 133881773 + 0.666667 NA intron (NM_001134398, intron 2 of 29) intron (NM_001134398, intron 2 of 29) 110654 NM_003371 7410 Hs.369921 NM_003371 ENSG00000160293 VAV2 VAV-2 vav guanine nucleotide exchange factor 2 protein-coding 178-64 chr8 51980250 51980661 + 0.666667 NA Intergenic Intergenic -81269 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 137.333-52 chr2 150903458 150903891 + 0.666667 NA Intergenic Intergenic 274777 NR_110245 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 124-77 chr5 149108122 149108579 + 0.666667 NA intron (NR_122044, intron 2 of 2) AluSq|SINE|Alu -33097 NM_001345859 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 277.667-2 chr10 15662522 15663173 + 0.666667 NA intron (NM_001291494, intron 7 of 28) intron (NM_001291494, intron 7 of 28) 57075 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 116.833-56 chr6 102903760 102904061 + 0.666667 NA Intergenic A-rich|Low_complexity|Low_complexity 1504925 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 146.333-68 chr3 146553346 146553657 + 0.666667 NA Intergenic L2c|LINE|L2 -8894 NM_021105 5359 Hs.130759 NM_021105 ENSG00000188313 PLSCR1 MMTRA1B phospholipid scramblase 1 protein-coding 175.167-23 chr17 74562187 74562646 + 0.666667 NA intron (NM_001324076, intron 2 of 2) L2a|LINE|L2 4927 NM_001324073 100130520 NM_001324073 ENSG00000284690 CD300H CD300Hs CD300H molecule (gene/pseudogene) protein-coding 125.667-105 chr6 71186310 71186609 + 0.666667 NA Intergenic L1PA15|LINE|L1 -102352 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 124-66 chr3 172686781 172687000 + 0.666667 NA intron (NM_001146276, intron 1 of 4) intron (NM_001146276, intron 1 of 4) 24177 NM_020792 57552 Hs.444099 NM_020792 ENSG00000144959 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 145-98 chr9 81752703 81752929 + 0.666667 NA intron (NR_109772, intron 3 of 3) AluSq2|SINE|Alu 63103 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 215.666-3 chr2 102248684 102249328 + 0.666667 NA Intergenic Intergenic 61692 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 184-2 chr1 52828578 52828886 + 0.666667 NA Intergenic AluSx|SINE|Alu -14028 NM_001307931 440590 Hs.658458 NM_001004339 ENSG00000203995 ZYG11A ZYG11 zyg-11 family member A, cell cycle regulator protein-coding 157.333-32 chr2 13534141 13534415 + 0.666667 NA Intergenic L1MD|LINE|L1 -527265 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 144.5-71 chr5 19902603 19902953 + 0.666667 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) -16506 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 162.833-22 chr2 110160483 110160796 + 0.666667 NA intron (NM_207181, intron 10 of 19) intron (NM_207181, intron 10 of 19) -44073 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 124.833-18 chr12 68510461 68510986 + 0.666667 NA Intergenic MIR|SINE|MIR -59239 NR_120458 100507195 Hs.450772 NR_120458 ENSG00000251301 LINC02384 - long intergenic non-protein coding RNA 2384 ncRNA 116.333-97 chr7 31544279 31544696 + 0.666667 NA intron (NM_001257968, intron 1 of 14) intron (NM_001257968, intron 1 of 14) -8515 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 154.333-46 chr22 24330241 24330708 + 0.666667 NA intron (NM_015330, intron 8 of 16) intron (NM_015330, intron 8 of 16) -11634 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 135-65 chr3 188566845 188567189 + 0.666667 NA intron (NR_046623, intron 1 of 1) intron (NR_046623, intron 1 of 1) 1649 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 194.667-17 chr12 3528346 3528701 + 0.666667 NA intron (NM_019854, intron 1 of 9) L1MB3|LINE|L1 -35704 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 115.667-62 chr20 1502493 1502787 + 0.666667 NA Intergenic L1M3c|LINE|L1 -11220 NM_001122962 284759 Hs.721685 NM_001122962 ENSG00000196209 SIRPB2 PTPN1L|PTPNS1L3|dJ776F14.2 signal regulatory protein beta 2 protein-coding 136.333-53 chr20 47358265 47358534 + 0.666667 NA Intergenic Intergenic -1510 NM_001281773 23613 Hs.446240 NM_012408 ENSG00000101040 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger MYND-type containing 8 protein-coding 216.667-2 chr1 207078877 207079314 + 0.666667 NA 3' UTR (NM_001018053, exon 15 of 15) 3' UTR (NM_001018053, exon 15 of 15) -9765 NM_001017365 725 Hs.99886 NM_000716 ENSG00000123843 C4BPB C4BP complement component 4 binding protein beta protein-coding 214.333-15 chr13 94484167 94484705 + 0.666667 NA intron (NM_001322185, intron 1 of 7) intron (NM_001322185, intron 1 of 7) -4754 NM_001129889 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 183.667-55 chr4 97674750 97675169 + 0.666667 NA intron (NM_174952, intron 10 of 10) MIR3|SINE|MIR 308033 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 205.833-19 chr2 175747133 175747695 + 0.666667 NA Intergenic Intergenic 254853 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 151-12 chr12 53704215 53704490 + 0.666667 NA Intergenic Intergenic 23100 NR_026554 57658 Hs.156667 NM_020898 ENSG00000012822 CALCOCO1 Cocoa|PP13275|calphoglin calcium binding and coiled-coil domain 1 protein-coding 143.667-59 chr2 110761358 110761874 + 0.666667 NA intron (NM_001371254, intron 1 of 18) LTR41B|LTR|ERVL 29043 NM_001371254 126.667-95 chr7 140875323 140875638 + 0.666667 NA intron (NR_148928, intron 1 of 17) AluSx1|SINE|Alu 49449 NR_148928 673 Hs.324250 NM_004333 ENSG00000157764 BRAF B-RAF1|B-raf|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 139.333-85 chr6 46236958 46237264 + 0.666667 NA intron (NM_001251973, intron 4 of 4) intron (NM_001251973, intron 4 of 4) -39213 NR_125838 101926915 Hs.575377 NR_125838 LOC101926915 - uncharacterized LOC101926915 ncRNA 188.333-44 chr4 81494007 81494371 + 0.666667 NA Intergenic L1ME4b|LINE|L1 -22282 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 159.5-15 chr13 78143183 78143482 + 0.666667 NA intron (NR_047001, intron 1 of 5) intron (NR_047001, intron 1 of 5) 88477 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 199.333-27 chr3 84032205 84032753 + 0.666667 NA Intergenic L1PA13|LINE|L1 837096 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 154.333-27 chr15 101297179 101297565 + 0.666667 NA Intergenic L1ME3A|LINE|L1 -2124 NR_135506 6627 Hs.528763 NM_003090 ENSG00000131876 SNRPA1 Lea1|U2A' small nuclear ribonucleoprotein polypeptide A' protein-coding 117.5-57 chr5 43295591 43295827 + 0.666667 NA intron (NM_001324222, intron 5 of 9) intron (NM_001324222, intron 5 of 9) 17472 NM_001364188 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 171.833-26 chr22 27353363 27353710 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR 42885 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 199.333-14 chr15 78614221 78614652 + 0.666667 NA intron (NR_046313, intron 4 of 7) intron (NR_046313, intron 4 of 7) 6560 NM_000743 1136 Hs.89605 NM_000743 ENSG00000080644 CHRNA3 LNCR2|NACHRA3|PAOD2 cholinergic receptor nicotinic alpha 3 subunit protein-coding 261.333-29 chr8 74681385 74681906 + 0.666667 NA intron (NR_033830, intron 2 of 5) MSTD|LTR|ERVL-MaLR -24048 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 163-65 chr8 137752177 137752523 + 0.666667 NA Intergenic Intergenic 331195 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 130.5-18 chr13 55226934 55227394 + 0.666667 NA Intergenic Intergenic 52710 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 114.167-51 chr2 169036691 169036978 + 0.666667 NA Intergenic Intergenic -5510 NM_003742 8647 Hs.158316 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 180.333-48 chr5 10761909 10762428 + 0.666667 NA promoter-TSS (NM_001291963) promoter-TSS (NM_001291963) -934 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 135.333-28 chr16 62276636 62276897 + 0.666667 NA Intergenic Intergenic -240328 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 120.333-117 chr8 89559370 89559813 + 0.666667 NA Intergenic Tigger17a|DNA|TcMar-Tigger 198120 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 148.167-53 chr3 163466372 163466703 + 0.666667 NA Intergenic L1MA1|LINE|L1 -163236 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 176-12 chr17 51620484 51620913 + 0.666667 NA Intergenic AluJr|SINE|Alu 185271 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 172-15 chr12 64800254 64800761 + 0.666667 NA intron (NM_001330188, intron 3 of 13) intron (NM_001330188, intron 3 of 13) 19752 NM_001330188 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 177.5 chr1 30753440 30753976 + 0.666667 NA intron (NM_006762, intron 1 of 7) L1MC3|LINE|L1 4066 NM_006762 7805 Hs.371021 NM_006762 ENSG00000162511 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 143.833-19 chr2 113277047 113277402 + 0.666667 NA intron (NM_013952, intron 2 of 11) CpG 1697 NM_013992 7849 Hs.469728 NM_003466 ENSG00000125618 PAX8 - paired box 8 protein-coding 202.333-51 chrX 49648026 49648468 + 0.666667 NA Intergenic AluSq2|SINE|Alu 47737 NM_003785 8712 Hs.128231 NM_003785 ENSG00000068985 PAGE1 AL5|CT16.3|GAGE-9|GAGEB1|PAGE-1 PAGE family member 1 protein-coding 146.5-12 chr10 52425973 52426342 + 0.666667 NA Intergenic AluSz|SINE|Alu 29115 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 199.167-43 chr8 78813794 78814313 + 0.666667 NA Intergenic L1MA8|LINE|L1 -8530 NM_001199886 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 168.333-2 chr10 28876043 28876349 + 0.666667 NA intron (NM_001278522, intron 4 of 4) intron (NM_001278522, intron 4 of 4) 29788 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 118.667-2 chr1 45109041 45109291 + 0.666667 NA intron (NM_020883, intron 1 of 13) intron (NM_020883, intron 1 of 13) 96912 NR_158184 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 114.333-109 chr6 108756694 108757034 + 0.666667 NA intron (NR_033376, intron 1 of 4) AluY|SINE|Alu 5210 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 235.834-4 chr2 104152541 104153216 + 0.666667 NA Intergenic L2a|LINE|L2 255454 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 127.333-8 chr1 196534700 196534910 + 0.666667 NA intron (NM_001287820, intron 1 of 26) intron (NM_001287820, intron 1 of 26) 47676 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 229.333-14 chr17 72498665 72499247 + 0.666667 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 93848 NR_137280 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 243.333-2 chr10 41727545 41728102 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 640222 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 137.667-15 chr10 125938166 125938660 + 0.666667 NA intron (NM_001363549, intron 1 of 10) L1MC5a|LINE|L1 34860 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 176.833-20 chr3 121242150 121242634 + 0.666667 NA intron (NM_001348343, intron 14 of 27) L1MDa|LINE|L1 192752 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 115.333-111 chr9 100863395 100863615 + 0.666667 NA Intergenic Intergenic -165222 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 122.333-122 chr9 118771577 118771925 + 0.666667 NA Intergenic Intergenic 92080 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 164.5-41 chr3 150624143 150624404 + 0.666667 NA intron (NM_016275, intron 3 of 5) intron (NM_016275, intron 3 of 5) 20952 NM_016275 51714 Hs.369052 NM_016275 ENSG00000198843 SELENOT SELT selenoprotein T protein-coding 121.667-65 chr3 77891218 77891513 + 0.666667 NA Intergenic Intergenic 157598 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 129-67 chr4 90895119 90895419 + 0.666667 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 660238 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 134.333-31 chr13 100928686 100929065 + 0.666667 NA intron (NR_047687, intron 2 of 7) intron (NR_047687, intron 2 of 7) 15489 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 162.5-37 chr20 1859542 1859888 + 0.666667 NA Intergenic Intergenic -34452 NM_001040022 140885 Hs.581021 NM_080792 ENSG00000198053 SIRPA BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP signal regulatory protein alpha protein-coding 183.167-2 chr1 75156838 75157143 + 0.666667 NA exon (NM_001256114, exon 8 of 9) exon (NM_001256114, exon 8 of 9) 22602 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 135-6 chr1 172582175 172582465 + 0.666667 NA intron (NM_001282751, intron 15 of 21) intron (NM_001282751, intron 15 of 21) 49170 NM_014283 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 124-86 chr7 6090366 6090863 + 0.666667 NA Intergenic AluSx|SINE|Alu -14335 NM_032172 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 277.5-8 chr22 28112914 28113683 + 0.666667 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -192686 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 209.333-28 chr3 37100690 37101064 + 0.666667 NA intron (NM_017724, intron 4 of 13) intron (NM_017724, intron 4 of 13) 73705 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 160-76 chrX 46766320 46766668 + 0.666667 NA Intergenic L1ME1|LINE|L1 -7376 NM_032591 84679 Hs.91389 NM_032591 ENSG00000065923 SLC9A7 MRX108|NHE-7|NHE7|SLC9A6 solute carrier family 9 member A7 protein-coding 227.833-6 chr15 76900384 76900804 + 0.666667 NA intron (NR_148227, intron 1 of 32) intron (NR_148227, intron 1 of 32) 4746 NM_001353010 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 259.334-3 chr22 19251790 19252352 + 0.666667 NA intron (NM_007098, intron 3 of 32) intron (NM_007098, intron 3 of 32) 39648 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 123.333-89 chr5 147440009 147440394 + 0.666667 NA intron (NM_001197294, intron 1 of 13) AluY|SINE|Alu 13491 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 114-4 chr1 55212551 55212873 + 0.666667 NA intron (NM_015306, intron 1 of 67) intron (NM_015306, intron 1 of 67) 2652 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 168.333-56 chr8 90416715 90417117 + 0.666667 NA Intergenic Intergenic 189147 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 117.5-55 chr5 40384940 40385353 + 0.666667 NA Intergenic Intergenic -294769 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 171.833-31 chr3 104105458 104105818 + 0.666667 NA Intergenic MLT2A1|LTR|ERVL -581522 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 119.5-58 chr22 26834353 26834710 + 0.666667 NA Intergenic L2|LINE|L2 -25680 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 124.5-76 chr8 92185190 92185412 + 0.666667 NA Intergenic L1MB7|LINE|L1 -81916 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 149.667-37 chr2 57101274 57101634 + 0.666667 NA Intergenic L1MA1|LINE|L1 -806197 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 122-27 chr17 32265224 32265461 + 0.666667 NA promoter-TSS (NM_001330181) promoter-TSS (NM_001330181) -490 NM_138328 162494 Hs.655027 NM_138328 ENSG00000141314 RHBDL3 RHBDL4|VRHO rhomboid like 3 protein-coding 135.167-49 chr2 123159598 123159848 + 0.666667 NA Intergenic LTR37B|LTR|ERV1 -86242 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 137-55 chr2 79621791 79622070 + 0.666667 NA intron (NM_001282598, intron 1 of 17) L1MC3|LINE|L1 27429 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 132.667-54 chr2 184039574 184040084 + 0.666667 NA Intergenic Intergenic -339146 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 205.333-21 chr19 44195920 44196515 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -16311 NM_001289172 7770 Hs.298089 NM_182490 ENSG00000131115 ZNF227 - zinc finger protein 227 protein-coding 134.667-69 chr4 57926214 57926718 + 0.666667 NA Intergenic Intergenic 500594 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 119.667-72 chr4 95313004 95313266 + 0.666667 NA intron (NM_003728, intron 2 of 15) intron (NM_003728, intron 2 of 15) 221644 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 118-33 chr14 60845195 60845433 + 0.666667 NA intron (NM_002431, intron 6 of 7) L1ME2z|LINE|L1 110553 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 169.167-29 chr3 29530988 29531378 + 0.666667 NA intron (NM_001003792, intron 3 of 13) MER5A1|DNA|hAT-Charlie 249871 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 188.333-41 chr3 190307311 190307696 + 0.666667 NA 3' UTR (NM_021101, exon 4 of 4) 3' UTR (NM_021101, exon 4 of 4) 14943 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 158.5-38 chr2 69471335 69471649 + 0.666667 NA 3' UTR (NM_014911, exon 22 of 22) 3' UTR (NM_014911, exon 22 of 22) -33864 NM_001002756 27247 Hs.430439 NM_015700 ENSG00000169599 NFU1 CGI-33|HIRIP|HIRIP5|MMDS1|NIFUC|Nfu|NifU NFU1 iron-sulfur cluster scaffold protein-coding 118.833-23 chr14 58988241 58988532 + 0.666667 NA intron (NR_110547, intron 4 of 5) intron (NR_110547, intron 4 of 5) 160098 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 242.667-26 chr8 100971767 100972254 + 0.666667 NA Intergenic MIR|SINE|MIR -18628 NM_003406 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 115-24 chr13 91714100 91714406 + 0.666667 NA intron (NM_004466, intron 3 of 7) L1MC5a|LINE|L1 315632 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 289.834 chr1 98539371 98540124 + 0.666667 NA Intergenic Intergenic -121974 NM_015976 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 154-60 chr4 52733689 52734082 + 0.666667 NA Intergenic Intergenic 17540 NM_001242690 100288413 Hs.363087 NM_024534 ENSG00000226887 ERVMER34-1 HEMO|envMER34 endogenous retrovirus group MER34 member 1, envelope protein-coding 133.667-26 chr14 62888103 62888460 + 0.666667 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 157177 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 130-56 chr2 151217827 151218161 + 0.666667 NA Intergenic Intergenic 43869 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 132.333-16 chr10 99159163 99159455 + 0.666667 NA intron (NM_021828, intron 2 of 11) intron (NM_021828, intron 2 of 11) 76566 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 123-76 chr6 34011622 34011900 + 0.666667 NA Intergenic L1MEc|LINE|L1 -11710 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 147-23 chr16 79620844 79621190 + 0.666667 NA Intergenic L1MB7|LINE|L1 -20280 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 153.167-46 chr6 34537453 34537811 + 0.666667 NA TTS (NM_001252294) TTS (NM_001252294) 18697 NM_012391 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding 127-6 chr10 53590726 53591007 + 0.666667 NA Intergenic L1PA12|LINE|L1 -819166 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 267.334-5 chr6 74757674 74758173 + 0.666667 NA Intergenic Intergenic 370859 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 149.333-56 chr2 181235094 181235384 + 0.666667 NA intron (NR_130784, intron 2 of 4) MIR|SINE|MIR 70413 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 113.667-69 chr2 139194472 139194991 + 0.666667 NA Intergenic Intergenic 297407 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 159.333-25 chr14 55842915 55843344 + 0.666667 NA Intergenic Intergenic -46455 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 197-43 chr7 17650082 17650603 + 0.666667 NA Intergenic Intergenic -91433 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 201.833-17 chr5 146356999 146357409 + 0.666667 NA Intergenic HAL1|LINE|L1 18365 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 191.333-13 chr15 49458877 49459409 + 0.666667 NA intron (NM_002009, intron 2 of 3) intron (NM_002009, intron 2 of 3) 35901 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 182.833-57 chr8 78496256 78496801 + 0.666667 NA Intergenic Intergenic -19812 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 119.333-105 chr8 17882361 17882642 + 0.666667 NA intron (NM_201552, intron 3 of 8) MIR|SINE|MIR 12903 NM_201553 2267 Hs.491143 NM_004467 ENSG00000104760 FGL1 HFREP1|HP-041|HPS|LFIRE-1|LFIRE1 fibrinogen like 1 protein-coding 152.834-2 chr20 16068770 16069296 + 0.666667 NA Intergenic Intergenic -83151 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 140.333-63 chr5 24553291 24553633 + 0.666667 NA intron (NM_001362460, intron 2 of 9) HAL1|LINE|L1 91516 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 124.5-30 chr19 40149311 40149841 + 0.666667 NA Intergenic AluJb|SINE|Alu -41850 NM_002446 4294 Hs.466743 NM_002446 ENSG00000130758 MAP3K10 MEKK10|MLK2|MST mitogen-activated protein kinase kinase kinase 10 protein-coding 140.5-11 chr10 119111667 119111947 + 0.666667 NA intron (NM_207009, intron 2 of 8) intron (NM_207009, intron 2 of 8) 7694 NM_207009 404636 Hs.434241 NM_207009 ENSG00000119979 DENND10 FAM45A DENN domain containing 10 protein-coding 126.833-56 chr6 52509365 52509825 + 0.666667 NA intron (NM_012288, intron 4 of 10) intron (NM_012288, intron 4 of 10) 67465 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 132.167-71 chr8 113924595 113924903 + 0.666667 NA Intergenic L1ME1|LINE|L1 -487810 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 147.167-20 chr12 70687872 70688151 + 0.666667 NA intron (NM_130846, intron 4 of 9) intron (NM_130846, intron 4 of 9) -50582 NM_001109754 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 145.333-22 chr12 75798286 75798608 + 0.666667 NA Intergenic Intergenic 233329 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 242.167-7 chr10 76905564 76906339 + 0.666667 NA intron (NR_120655, intron 2 of 3) MIR|SINE|MIR 17907 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 128.333-61 chr2 69419756 69420137 + 0.666667 NA intron (NR_045632, intron 2 of 5) L1M5|LINE|L1 17489 NM_001002755 27247 Hs.430439 NM_015700 ENSG00000169599 NFU1 CGI-33|HIRIP|HIRIP5|MMDS1|NIFUC|Nfu|NifU NFU1 iron-sulfur cluster scaffold protein-coding 181.333-24 chr17 69520335 69520652 + 0.666667 NA intron (NM_001330450, intron 6 of 11) intron (NM_001330450, intron 6 of 11) 18231 NM_001330450 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 259-9 chr2 42940993 42941405 + 0.666667 NA Intergenic MER2|DNA|TcMar-Tigger 98344 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 163.333-77 chr8 117844168 117844603 + 0.666667 NA intron (NM_000127, intron 1 of 10) AluJb|SINE|Alu 76528 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 188.667-14 chr12 41943802 41944338 + 0.666667 NA Intergenic Intergenic 179881 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 145.5-3 chr1 187579713 187580090 + 0.666667 NA Intergenic Intergenic 136273 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 165-65 chr9 97685465 97686000 + 0.666667 NA intron (NR_149091, intron 2 of 3) intron (NR_149091, intron 2 of 3) 11677 NR_149094 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 218.667-4 chr10 87601621 87602078 + 0.666667 NA Intergenic L1MB7|LINE|L1 -58029 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 149-12 chr10 36915211 36915795 + 0.666667 NA Intergenic Intergenic -210354 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 300-3 chr16 5958089 5958847 + 0.666667 NA Intergenic MIR|SINE|MIR -60556 NM_001364800 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 146.667-57 chr20 57676889 57677158 + 0.666667 NA intron (NM_199171, intron 1 of 3) L2a|LINE|L2 13663 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 245.167 chr1 159360158 159360634 + 0.666667 NA Intergenic L1ME3F|LINE|L1 -37069 NM_001363557 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 155-51 chr3 78857892 78858217 + 0.666667 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 161405 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 190.167-32 chr22 50723045 50723395 + 0.666667 NA intron (NM_033517, intron 21 of 21).2 intron (NM_033517, intron 21 of 21).2 14949 NR_134637 105373100 Hs.475243 NR_134637 ENSG00000225929 LOC105373100 - uncharacterized LOC105373100 ncRNA 255.333-20 chr5 40485031 40485596 + 0.666667 NA Intergenic MIRb|SINE|MIR -194602 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 154.833-9 chr10 39074377 39075005 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 378095 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 118.833-30 chr17 63327372 63327688 + 0.666667 NA intron (NM_025185, intron 10 of 25) L1PA15|LINE|L1 112737 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 203.833-21 chr4 181843134 181843504 + 0.666667 NA Intergenic UCON55|DNA|TcMar-Tigger -13346 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 275.333-21 chr6 70049720 70050230 + 0.666667 NA intron (NM_001858, intron 14 of 50) intron (NM_001858, intron 14 of 50) 183419 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 194.333-5 chr11 6156879 6157303 + 0.666667 NA Intergenic L1M1|LINE|L1 13235 NM_001004052 255725 Hs.690457 NM_001004052 ENSG00000255307 OR52B2 OR11-70 olfactory receptor family 52 subfamily B member 2 protein-coding 249.667 chr1 42835333 42835743 + 0.666667 NA intron (NM_001017922, intron 5 of 11) L3|LINE|CR1 9960 NM_018538 114625 Hs.439437 NM_018538 ENSG00000164010 ERMAP BTN5|PRO2801|RD|SC erythroblast membrane associated protein (Scianna blood group) protein-coding 208.333-37 chr5 174677856 174678610 + 0.666667 NA Intergenic L2b|LINE|L2 -46349 NM_001363626 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 140.5-26 chr16 8685374 8685877 + 0.666667 NA intron (NM_020686, intron 1 of 15) AluSx|SINE|Alu 11008 NM_020686 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 128.333-72 chr2 210431618 210431838 + 0.666667 NA 3' UTR (NM_001136575, exon 10 of 10) 3' UTR (NM_001136575, exon 10 of 10) 44977 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 196.5-14 chr14 75518439 75519227 + 0.666667 NA Intergenic MER91A|DNA|hAT-Tip100 -3636 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 126-97 chr8 120747169 120747465 + 0.666667 NA intron (NM_021021, intron 1 of 6) AluSz6|SINE|Alu -13936 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 127-93 chr7 94064747 94065061 + 0.666667 NA Intergenic Intergenic -60549 NR_133909 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 149-37 chr2 70481032 70481370 + 0.666667 NA intron (NR_046798, intron 1 of 2) L3|LINE|CR1 439 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 205.667-11 chr12 27424699 27425068 + 0.666667 NA 3' UTR (NM_020183, exon 17 of 17) 3' UTR (NM_020183, exon 17 of 17) 21751 NR_109975 101928646 Hs.434269 NR_109975 ENSG00000245311 ARNTL2-AS1 - ARNTL2 antisense RNA 1 ncRNA 154.5-72 chr8 117046664 117047054 + 0.666667 NA intron (NM_001172815, intron 2 of 10) MLT1M|LTR|ERVL-MaLR -88136 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 154-62 chr4 73872448 73873068 + 0.666667 NA Intergenic MIR|SINE|MIR 3365 NR_046035 2919 Hs.789 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 C-X-C motif chemokine ligand 1 protein-coding 118.667-123 chr9 95531737 95531935 + 0.666667 NA Intergenic Intergenic -14779 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 211.5-5 chr10 51786242 51786701 + 0.666667 NA intron (NM_001098512, intron 3 of 17) L2c|LINE|L2 -86876 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 144.833-36 chr20 2173666 2174084 + 0.666667 NA Intergenic Intergenic -33053 NR_161305 388780 Hs.132163 NR_161305 LOC388780 - uncharacterized LOC388780 ncRNA 125.5-59 chr4 62437216 62437542 + 0.666667 NA Intergenic Intergenic -275614 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 120-91 chr5 84247994 84248207 + 0.666667 NA intron (NM_005711, intron 2 of 10) L2a|LINE|L2 136767 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 121.5-109 chr8 134692036 134692482 + 0.666667 NA intron (NM_001289394, intron 1 of 16) MIRc|SINE|MIR 4296 NM_001029939 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 133.5-71 chr7 24967757 24968047 + 0.666667 NA intron (NM_015550, intron 1 of 22) L2|LINE|L2 12276 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 137.333-115 chrX 24894289 24894774 + 0.666667 NA intron (NM_016937, intron 35 of 36) MLT1C|LTR|ERVL-MaLR 121434 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 123.167-50 chr2 81905242 81905426 + 0.666667 NA Intergenic Intergenic -438388 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 143.333-47 chr20 52866644 52866959 + 0.666667 NA Intergenic L1ME3C|LINE|L1 -105557 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 135.667-73 chr3 120124989 120125336 + 0.666667 NA Intergenic L1ME4b|LINE|L1 -30715 NM_001354596 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 133.667-51 chr2 78692925 78693230 + 0.666667 NA Intergenic L1MD|LINE|L1 147546 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 226.667-7 chr10 125742785 125743238 + 0.666667 NA intron (NR_110858, intron 18 of 25) intron (NR_110858, intron 18 of 25) 9049 NR_120633 101927983 Hs.634269 NR_120633 ENSG00000236991 EDRF1-AS1 - EDRF1 antisense RNA 1 ncRNA 115-33 chr17 61994001 61994297 + 0.666667 NA intron (NM_005121, intron 10 of 29) AluSg4|SINE|Alu -66167 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 137.333-58 chr20 52747111 52747470 + 0.666667 NA Intergenic MIRb|SINE|MIR 126452 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 221.167-6 chr10 116033218 116033965 + 0.666667 NA Intergenic L1M4b|LINE|L1 161198 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 188.167-23 chr2 178046812 178047296 + 0.666667 NA intron (NM_001077197, intron 2 of 20) intron (NM_001077197, intron 2 of 20) 25723 NM_016953 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 154.5-57 chr5 119221740 119222438 + 0.666667 NA intron (NM_001290321, intron 37 of 43) intron (NM_001290321, intron 37 of 43) -46670 NM_001286815 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 178.167-48 chr8 52196976 52197296 + 0.666667 NA intron (NR_134310, intron 1 of 1) intron (NR_134310, intron 1 of 1) 2774 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 167 chr1 15216104 15216496 + 0.666667 NA intron (NM_001319665, intron 3 of 3) intron (NM_001319665, intron 3 of 3) -30925 NM_052929 114827 Hs.659997 NM_052929 ENSG00000142621 FHAD1 - forkhead associated phosphopeptide binding domain 1 protein-coding 246.167-3 chr10 33447857 33448277 + 0.666667 NA Intergenic Intergenic -113162 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 167.667-5 chr1 163525701 163526033 + 0.666667 NA Intergenic L1MB8|LINE|L1 -102676 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 210.5-29 chr22 48927575 48928111 + 0.666667 NA Intergenic L1ME3G|LINE|L1 61073 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 186.5-15 chr11 29882847 29883277 + 0.666667 NA Intergenic LTR49-int|LTR|ERV1 99331 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 141.833-20 chr2 115664249 115664520 + 0.666667 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 320569 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 222.667-32 chr6 119839405 119840107 + 0.666667 NA intron (NR_134600, intron 2 of 3) L1MA9|LINE|L1 -175423 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 131.5-43 chr20 38470511 38470894 + 0.666667 NA Intergenic Intergenic -2141 NM_001282917 57148 Hs.598850 NM_020336 ENSG00000170471 RALGAPB KIAA1219|RalGAPbeta Ral GTPase activating protein non-catalytic beta subunit protein-coding 320.333 chr10 82902344 82902976 + 0.666667 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -669740 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 181.5-50 chr5 128619401 128619963 + 0.666667 NA Intergenic LTR33|LTR|ERVL -81437 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 238-32 chr8 137582974 137583430 + 0.666667 NA Intergenic Intergenic -169614 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 141.167-30 chr15 83715261 83715570 + 0.666667 NA intron (NM_207517, intron 3 of 29) intron (NM_207517, intron 3 of 29) 61292 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 141.333-6 chr1 224881277 224881575 + 0.666667 NA Intergenic AluSz6|SINE|Alu -48228 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 123.333-23 chr11 10915195 10915433 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 57097 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 115.333-97 chr6 170071877 170072079 + 0.666667 NA Intergenic L1ME1|LINE|L1 -88664 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 146.167-25 chr16 78589764 78590061 + 0.666667 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 490258 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 119.167-33 chr18 6161911 6162137 + 0.666667 NA intron (NM_001365769, intron 13 of 16) intron (NM_001365769, intron 13 of 16) -94720 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 126.333-16 chr11 33305175 33305514 + 0.666667 NA intron (NM_001278162, intron 2 of 15) intron (NM_001278162, intron 2 of 15) 47013 NM_001278162 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 213.333-39 chr6 160551948 160552357 + 0.666667 NA intron (NM_005577, intron 30 of 38) AluJo|SINE|Alu -41028 NR_028093 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 152.167-30 chr2 103417531 103417829 + 0.666667 NA Intergenic L1PB1|LINE|L1 -433251 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 161.333-21 chr14 29503714 29503976 + 0.666667 NA Intergenic L1MD|LINE|L1 423251 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 200.833-9 chr14 74001741 74002141 + 0.666667 NA intron (NM_001330189, intron 3 of 16) intron (NM_001330189, intron 3 of 16) 17347 NM_001330189 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 131-45 chr4 85732479 85733036 + 0.666667 NA intron (NM_001025616, intron 3 of 9) AluSp|SINE|Alu 10289 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 185.833-5 chr1 189204926 189205316 + 0.666667 NA Intergenic Intergenic 1270889 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 182.333-2 chr1 32536903 32537313 + 0.666667 NA Intergenic L2a|LINE|L2 -2319 NM_001291496 653121 Hs.546479 NM_144621 ENSG00000160062 ZBTB8A BOZF1|ZBTB8|ZNF916A zinc finger and BTB domain containing 8A protein-coding 129.333-33 chr14 88212474 88212783 + 0.666667 NA intron (NM_138317, intron 4 of 6) Charlie23a|DNA|hAT-Charlie 58283 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 162.167-13 chr13 64540169 64540506 + 0.666667 NA Intergenic L1ME2|LINE|L1 -464326 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 141.667-90 chr5 113029061 113029358 + 0.666667 NA intron (NM_001085377, intron 17 of 18) intron (NM_001085377, intron 17 of 18) 52411 NM_152624 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 114.167-7 chr10 69604605 69604875 + 0.666667 NA Intergenic L1MD1|LINE|L1 -25507 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 135.667-95 chr6 35473940 35474250 + 0.666667 NA 3' UTR (NM_003214, exon 13 of 13) 3' UTR (NM_003214, exon 13 of 13) 3587 NR_106961 102465668 NR_106961 ENSG00000276712 MIR7111 hsa-mir-7111 microRNA 7111 ncRNA 227-16 chr22 22817826 22818569 + 0.666667 NA Intergenic Intergenic -4579 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 202-20 chr2 217244274 217244702 + 0.666667 NA Intergenic Intergenic -38245 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 156-50 chr3 21245808 21246145 + 0.666667 NA Intergenic Tigger7|DNA|TcMar-Tigger -159750 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 124.833-80 chr6 120687173 120687616 + 0.666667 NA Intergenic Intergenic 647086 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 128-7 chr1 229713978 229714421 + 0.666667 NA Intergenic L1MEc|LINE|L1 87952 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 158.5-36 chr2 60309008 60309352 + 0.666667 NA Intergenic MIRb|SINE|MIR 73856 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 129-22 chr11 99017039 99017332 + 0.666667 NA Intergenic Intergenic -3764 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 138 chr1 79412053 79412446 + 0.666667 NA Intergenic MER34B|LTR|ERV1 -405519 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 297.667-6 chr5 26173843 26174519 + 0.666667 NA Intergenic Intergenic 864405 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 122.5-85 chr6 154738847 154739210 + 0.666667 NA intron (NM_014892, intron 1 of 19) AluJr4|SINE|Alu 5650 NM_001286199 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 229-5 chr10 100074947 100075382 + 0.666667 NA intron (NM_001308, intron 2 of 8) AluSx3|SINE|Alu 6705 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 151.5-78 chr9 92567638 92567924 + 0.666667 NA intron (NM_001286969, intron 4 of 6) L1MB3|LINE|L1 -31689 NM_001197295 1842 Hs.117060 NM_001393 ENSG00000106823 ECM2 - extracellular matrix protein 2 protein-coding 158.333-13 chr11 11828745 11829084 + 0.666667 NA Intergenic Intergenic -12509 NM_017944 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 164-9 chr10 115892399 115892839 + 0.666667 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 302170 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 227.167-20 chr20 45206131 45206564 + 0.666667 NA promoter-TSS (NM_003007) promoter-TSS (NM_003007) -686 NM_003007 6406 Hs.1968 NM_003007 ENSG00000124233 SEMG1 CT103|SEMG|SGI|dJ172H20.2 semenogelin 1 protein-coding 144.333-47 chr2 126045161 126045582 + 0.666667 NA Intergenic Intergenic 72614 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 199.333-36 chr6 124215987 124216449 + 0.666667 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -66787 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 121.333-16 chr11 44368435 44368670 + 0.666667 NA Intergenic Tigger4b|DNA|TcMar-Tigger -58413 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 298.5-8 chr18 44147777 44148516 + 0.666667 NA Intergenic Intergenic 383551 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 125-98 chr8 119432279 119432570 + 0.666667 NA Intergenic Intergenic 15978 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 147.667-82 chr9 115336300 115336792 + 0.666667 NA intron (NR_163556, intron 4 of 7) MIRc|SINE|MIR 194728 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 117.667-98 chr5 15229924 15230168 + 0.666667 NA intron (NR_109944, intron 2 of 2) L1MB4|LINE|L1 36514 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 218.5-9 chr14 48287282 48287723 + 0.666667 NA Intergenic L1PA10|LINE|L1 -492488 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 149.333-23 chr12 100837166 100837460 + 0.666667 NA intron (NM_001286615, intron 1 of 27) MIR|SINE|MIR 42537 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 118.5-4 chr1 73103188 73103414 + 0.666667 NA Intergenic L1PA17|LINE|L1 -202869 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 236.667-29 chr4 155141504 155142203 + 0.666667 NA Intergenic Intergenic -66783 NM_000910 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 175.833-7 chr12 26912154 26912588 + 0.666667 NA intron (NM_018164, intron 14 of 16) AluSx|SINE|Alu 25610 NM_018164 55726 Hs.505077 NM_018164 ENSG00000064102 INTS13 ASUN|C12orf11|GCT1|Mat89Bb|NET48|SPATA30 integrator complex subunit 13 protein-coding 154.833-2 chr1 46499747 46500114 + 0.666667 NA intron (NM_172225, intron 2 of 5) intron (NM_172225, intron 2 of 5) -7069 NM_147192 127343 Hs.375623 NM_147192 ENSG00000197587 DMBX1 MBX|OTX3|PAXB diencephalon/mesencephalon homeobox 1 protein-coding 226.333-5 chr13 89136391 89137121 + 0.666667 NA Intergenic Intergenic -98535 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 203-29 chr3 72129901 72130416 + 0.666667 NA Intergenic Intergenic -21099 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 172.667-67 chr5 170894502 170894840 + 0.666667 NA intron (NM_022897, intron 4 of 27) intron (NM_022897, intron 4 of 27) 32653 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 149.667-46 chr20 24674070 24674467 + 0.666667 NA Intergenic Intergenic 204307 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 208-42 chr8 108910234 108910808 + 0.666667 NA Intergenic Intergenic -122927 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 119.333-103 chr7 112442071 112442269 + 0.666667 NA intron (NM_001197080, intron 1 of 11) intron (NM_001197080, intron 1 of 11) -8258 NM_001550 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 226.333-16 chr2 14406599 14407183 + 0.666667 NA Intergenic L2a|LINE|L2 -5933 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 145.333-58 chr4 77853723 77854126 + 0.666667 NA Intergenic Intergenic -8906 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 118-114 chr7 111645656 111646045 + 0.666667 NA Intergenic AluJb|SINE|Alu -83333 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 141-74 chr5 101044713 101045037 + 0.666667 NA Intergenic Intergenic -141593 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 262.667-2 chr1 90829411 90830140 + 0.666667 NA non-coding (NR_147930, exon 2 of 2) non-coding (NR_147930, exon 2 of 2) 6386 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 135.833-52 chr4 64134539 64134873 + 0.666667 NA Intergenic Intergenic 274744 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 120-76 chr3 160318749 160319022 + 0.666667 NA intron (NM_001190242, intron 8 of 18) MER39|LTR|ERV1 64881 NM_001190242 57560 Hs.478095 NM_020800 ENSG00000068885 IFT80 ATD2|SRTD2|WDR56 intraflagellar transport 80 protein-coding 136.833-76 chr8 76667734 76668038 + 0.666667 NA intron (NR_024360, intron 2 of 3) intron (NR_024360, intron 2 of 3) -13361 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 117.5-62 chr6 38646335 38646710 + 0.666667 NA Intergenic Intergenic -6593 NM_052893 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 199.667-42 chr3 122552439 122552931 + 0.666667 NA intron (NM_031458, intron 4 of 10) intron (NM_031458, intron 4 of 10) 11615 NM_001146105 83666 Hs.518200 NM_031458 ENSG00000138496 PARP9 ARTD9|BAL|BAL1|MGC:7868 poly(ADP-ribose) polymerase family member 9 protein-coding 194.833 chr1 173309468 173310111 + 0.666667 NA intron (NR_037845, intron 2 of 2) L1ME4a|LINE|L1 -102458 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 114.833-47 chr3 182449359 182449624 + 0.666667 NA intron (NR_040105, intron 2 of 3) intron (NR_040105, intron 2 of 3) 36871 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 117.167-19 chr14 25398570 25398777 + 0.666667 NA Intergenic MIRc|SINE|MIR -348376 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 169-4 chr10 4494808 4495250 + 0.666667 NA Intergenic Intergenic 88560 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 159.667-13 chr10 26529168 26529438 + 0.666667 NA intron (NM_019043, intron 8 of 14) intron (NM_019043, intron 8 of 14) 50004 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 174-22 chr14 57164848 57165393 + 0.666667 NA Intergenic L1ME4a|LINE|L1 103785 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 122-29 chr18 1833175 1833511 + 0.666667 NA Intergenic L1MCa|LINE|L1 -473714 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 223-17 chr20 39132804 39133248 + 0.666667 NA Intergenic L2c|LINE|L2 91722 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 189.667-39 chr4 110372839 110373282 + 0.666667 NA Intergenic L2a|LINE|L2 -103095 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 127.333-116 chr8 114939975 114940302 + 0.666667 NA Intergenic L3|LINE|CR1 727875 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 147.833-63 chr8 74038621 74038952 + 0.666667 NA Intergenic L1MA3|LINE|L1 47394 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 116.667-63 chr20 9962835 9963381 + 0.666667 NA Intergenic MER21C|LTR|ERVL -23225 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 123.167-38 chr17 32810656 32810870 + 0.666667 NA intron (NM_015194, intron 1 of 21) intron (NM_015194, intron 1 of 21) 66361 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 139.333-58 chr3 22898565 22898887 + 0.666667 NA Intergenic MER112|DNA|hAT-Charlie 303852 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 157.667-63 chr6 55815838 55816105 + 0.666667 NA intron (NM_001329754, intron 2 of 5) L3|LINE|CR1 59619 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 127.833-4 chr1 187787311 187787698 + 0.666667 NA Intergenic Intergenic 343876 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 208.5-12 chr12 72488158 72488556 + 0.666667 NA intron (NM_013381, intron 5 of 18) L1MA9|LINE|L1 -214848 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 116-51 chr2 120011406 120011720 + 0.666667 NA Intergenic Intergenic -1514 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 147-21 chr14 88538594 88538943 + 0.666667 NA intron (NM_007039, intron 2 of 18) intron (NM_007039, intron 2 of 18) 16239 NM_007039 11099 Hs.437040 NM_007039 ENSG00000070778 PTPN21 PTPD1|PTPRL10 protein tyrosine phosphatase non-receptor type 21 protein-coding 118-3 chr1 69876235 69876583 + 0.666667 NA intron (NM_001370785, intron 7 of 26) intron (NM_001370785, intron 7 of 26) -42913 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 177.667-60 chr5 144842201 144842602 + 0.666667 NA Intergenic AluSx1|SINE|Alu 637010 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 155.167-11 chr12 64749478 64749765 + 0.666667 NA intron (NM_002076, intron 2 of 13) L1M3|LINE|L1 9785 NM_002076 2799 Hs.334534 NM_002076 ENSG00000135677 GNS G6S glucosamine (N-acetyl)-6-sulfatase protein-coding 193-37 chr5 103982506 103982897 + 0.666667 NA Intergenic AluSq2|SINE|Alu -419912 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 125.333-125 chr8 133121849 133122248 + 0.666667 NA intron (NM_003235, intron 45 of 47) intron (NM_003235, intron 45 of 47) -19446 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 182-29 chr2 174196659 174197065 + 0.666667 NA intron (NM_001011708, intron 3 of 9) intron (NM_001011708, intron 3 of 9) 51670 NM_001328688 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 208.667-30 chr3 132645260 132645603 + 0.666667 NA intron (NM_032169, intron 1 of 19) intron (NM_032169, intron 1 of 19) -9015 NM_198329 79876 Hs.170737 NM_024818 ENSG00000081307 UBA5 EIEE44|SCAR24|THIFP1|UBE1DC1 ubiquitin like modifier activating enzyme 5 protein-coding 142.5-11 chr10 57871734 57872194 + 0.666667 NA Intergenic Intergenic 395930 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 196.667-41 chr4 100465833 100466184 + 0.666667 NA intron (NM_001159694, intron 3 of 10) intron (NM_001159694, intron 3 of 10) 52014 NM_016242 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 299.667-11 chr3 76593011 76593726 + 0.666667 NA Intergenic Intergenic -446731 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 160-57 chr4 84165827 84166134 + 0.666667 NA intron (NR_125909, intron 5 of 8) intron (NR_125909, intron 5 of 8) 133189 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 270.167-9 chr2 137322327 137322738 + 0.666667 NA intron (NM_001316349, intron 12 of 27) MIR|SINE|MIR 556987 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 158.833-57 chr6 111168536 111168838 + 0.666667 NA intron (NM_018593, intron 1 of 5) intron (NM_018593, intron 1 of 5) 54853 NR_145796 109623478 NR_145796 SNORD166 - small nucleolar RNA, C/D box 166 snoRNA 139.667 chr1 26425003 26425225 + 0.666667 NA intron (NM_024674, intron 2 of 3) intron (NM_024674, intron 2 of 3) -7168 NM_024887 79947 Hs.369385 NM_024887 ENSG00000117682 DHDDS CIT|CPT|DEDSM|DS|HDS|RP59|hCIT dehydrodolichyl diphosphate synthase subunit protein-coding 155.833-21 chr16 89231038 89231369 + 0.666667 NA non-coding (NR_037705, exon 6 of 6) non-coding (NR_037705, exon 6 of 6) 13500 NM_182531 197320 Hs.647385 NM_182531 ENSG00000170100 ZNF778 - zinc finger protein 778 protein-coding 159-16 chr13 43783076 43783361 + 0.666667 NA intron (NM_001347966, intron 1 of 17) intron (NM_001347966, intron 1 of 17) 3754 NM_001347971 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 213-12 chr19 28728315 28728900 + 0.666667 NA promoter-TSS (NR_110759) promoter-TSS (NR_110759) -913 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 180.333-37 chr20 38735692 38735995 + 0.666667 NA Intergenic LTR16C|LTR|ERVL 11357 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 148.667-59 chr5 22948723 22949048 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie -95541 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 132.667-85 chr6 129254730 129254975 + 0.666667 NA intron (NM_000426, intron 14 of 64) intron (NM_000426, intron 14 of 64) 371711 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 128.667-80 chr4 46257658 46257946 + 0.666667 NA intron (NM_001286827, intron 8 of 9) intron (NM_001286827, intron 8 of 9) 131577 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 192-25 chr20 61191073 61191618 + 0.666667 NA Intergenic Intergenic -60916 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 142.167-35 chr19 44978645 44978915 + 0.666667 NA intron (NM_001282175, intron 5 of 13) MSTC|LTR|ERVL-MaLR -22684 NM_006509 5971 Hs.654402 NM_006509 ENSG00000104856 RELB I-REL|IMD53|IREL|REL-B RELB proto-oncogene, NF-kB subunit protein-coding 188-59 chr7 26987255 26987671 + 0.666667 NA Intergenic Intergenic 108537 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 142.5-73 chr9 27919186 27919406 + 0.666667 NA Intergenic L1MEf|LINE|L1 -345430 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 212.833-10 chr2 184365571 184365945 + 0.666667 NA Intergenic Intergenic -13217 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 157.667-37 chr2 210930488 210930755 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 313050 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 217.667-24 chr2 174100792 174101172 + 0.666667 NA intron (NM_001011708, intron 6 of 9) L1ME2|LINE|L1 75702 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 134.5-11 chr10 16178824 16179165 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -257949 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 196.667-56 chr8 138539290 138539842 + 0.666667 NA Intergenic Intergenic -41836 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 150.167-66 chr8 120585270 120585544 + 0.666667 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) 139988 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 167.333-54 chr5 12115168 12115566 + 0.666667 NA Intergenic Intergenic -210921 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 135.667-42 chr17 61776736 61777080 + 0.666667 NA intron (NM_032043, intron 13 of 19) intron (NM_032043, intron 13 of 19) 86651 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 157.333-17 chr12 129795842 129796268 + 0.666667 NA intron (NM_133448, intron 1 of 8) FLAM_C|SINE|Alu 107970 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 191.833-31 chr6 62216378 62216764 + 0.666667 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 69654 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 163.333-90 chrX 84821422 84821732 + 0.666667 NA Intergenic Intergenic -112574 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 133-57 chr3 25431884 25432189 + 0.666667 NA intron (NR_110892, intron 1 of 6) intron (NR_110892, intron 1 of 6) 3773 NR_110893 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 172.667-85 chr9 92014194 92014491 + 0.666667 NA Intergenic L1ME3C|LINE|L1 -64114 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 119.833-21 chr10 110050818 110051135 + 0.666667 NA intron (NM_001121, intron 1 of 13) L1ME3G|LINE|L1 -42595 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 116.833-44 chr4 136551647 136552102 + 0.666667 NA Intergenic Intergenic -638194 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 274.334-4 chr2 164822940 164823574 + 0.666667 NA intron (NM_001278458, intron 2 of 16) intron (NM_001278458, intron 2 of 16) -17492 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 209.167-4 chr10 77204371 77204702 + 0.666667 NA intron (NM_001271519, intron 3 of 28) intron (NM_001271519, intron 3 of 28) 63705 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 277-6 chr15 93360480 93361001 + 0.666667 NA Intergenic Intergenic 154674 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 161-79 chr8 126532246 126532562 + 0.666667 NA Intergenic Intergenic 26074 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 144-18 chr14 52714314 52714560 + 0.666667 NA intron (NR_158967, intron 7 of 14) intron (NR_158967, intron 7 of 14) 7237 NM_001366414 5706 Hs.156171 NM_002806 ENSG00000100519 PSMC6 SUG2|p42 proteasome 26S subunit, ATPase 6 protein-coding 171.5-30 chr2 64120033 64120503 + 0.666667 NA intron (NM_020651, intron 1 of 6) intron (NM_020651, intron 1 of 6) 24152 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 174.667-15 chr12 83678559 83678860 + 0.666667 NA Intergenic Intergenic 991554 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 132.5-81 chr6 15538711 15539123 + 0.666667 NA intron (NR_036448, intron 8 of 9) intron (NR_036448, intron 8 of 9) 124111 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 143.333-2 chr1 204229605 204229922 + 0.666667 NA intron (NM_014935, intron 18 of 22) intron (NM_014935, intron 18 of 22) -15775 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 152.167-5 chr1 211919704 211919991 + 0.666667 NA Intergenic AluSq2|SINE|Alu 88886 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 128.167-41 chr2 206428080 206428435 + 0.666667 NA Intergenic LTR79|LTR|ERVL -15275 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 144.333-19 chr11 84337021 84337397 + 0.666667 NA intron (NM_001142699, intron 7 of 27) MIRc|SINE|MIR -19870 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 173.333-60 chr6 88836939 88837651 + 0.666667 NA intron (NM_003800, intron 11 of 15) AluJo|SINE|Alu 126323 NM_001286426 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 263.833-12 chr7 42774900 42775616 + 0.666667 NA Intergenic MIR|SINE|MIR -68811 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 162-56 chr5 35440406 35440877 + 0.666667 NA Intergenic L1MC3|LINE|L1 -177222 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 143.167-71 chr6 40277540 40277834 + 0.666667 NA Intergenic MLT1H1|LTR|ERVL-MaLR 78319 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 118.333-111 chr8 20369125 20369552 + 0.666667 NA Intergenic Intergenic -65375 NM_021020 11178 Hs.521432 NM_021020 ENSG00000061337 LZTS1 F37|FEZ1 leucine zipper tumor suppressor 1 protein-coding 124.334-4 chr4 47943547 47944061 + 0.666667 NA intron (NM_000087, intron 6 of 10) intron (NM_000087, intron 6 of 10) -29137 NM_001278623 152518 Hs.646325 NM_152995 ENSG00000170448 NFXL1 CDZFP|HOZFP|OZFP|URCC5 nuclear transcription factor, X-box binding like 1 protein-coding 199.667-43 chr3 126167519 126167860 + 0.666667 NA intron (NM_001270364, intron 1 of 22) intron (NM_001270364, intron 1 of 22) -12376 NR_046383 100862662 Hs.633362 NR_046383 ENSG00000246022 ALDH1L1-AS2 - ALDH1L1 antisense RNA 2 ncRNA 134.333-49 chr18 35959412 35959828 + 0.666667 NA Intergenic AluJb|SINE|Alu -13005 NM_001201474 83608 Hs.37883 NM_031446 ENSG00000141428 C18orf21 HsT3108|PNAS-124|PNAS-131|XTP13 chromosome 18 open reading frame 21 protein-coding 179.333-33 chr20 13775954 13776293 + 0.666667 NA exon (NM_016649, exon 3 of 14) exon (NM_016649, exon 3 of 14) 8763 NM_016649 51575 Hs.369284 NM_016649 ENSG00000089048 ESF1 ABTAP|C20orf6|HDCMC28P|bA526K24.1 ESF1 nucleolar pre-rRNA processing protein homolog protein-coding 169.167-46 chr9 100160018 100160526 + 0.666667 NA intron (NR_134606, intron 3 of 16) intron (NR_134606, intron 3 of 16) 61029 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 164.833-16 chr13 112956258 112956585 + 0.666667 NA Intergenic Intergenic 12217 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 142-39 chr19 40087250 40087673 + 0.666667 NA intron (NM_001142578, intron 2 of 5) intron (NM_001142578, intron 2 of 5) 3442 NM_001010880 284323 Hs.115140 NM_001010880 ENSG00000197782 ZNF780A ZNF780 zinc finger protein 780A protein-coding 122.667-102 chr9 107281673 107281998 + 0.666667 NA Intergenic AluJb|SINE|Alu -1444 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 150.667-84 chr6 90552004 90552360 + 0.666667 NA intron (NM_145331, intron 7 of 16) intron (NM_145331, intron 7 of 16) 34890 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 150-42 chr2 156251165 156251475 + 0.666667 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 3611 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 133.333-3 chr1 106578168 106578400 + 0.666667 NA Intergenic Intergenic -239955 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 152.833-10 chr10 99760859 99761247 + 0.666667 NA Intergenic AluJo|SINE|Alu -21587 NM_000392 1244 Hs.368243 NM_000392 ENSG00000023839 ABCC2 ABC30|CMOAT|DJS|MRP2|cMRP ATP binding cassette subfamily C member 2 protein-coding 142.667-55 chr2 177881550 177881920 + 0.666667 NA intron (NM_001077197, intron 5 of 20) MER58A|DNA|hAT-Charlie 7021 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 130.333-50 chr2 82215959 82216422 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -640613 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 130.167-17 chr12 109902677 109903013 + 0.666667 NA intron (NM_032300, intron 1 of 12) MER5B|DNA|hAT-Charlie 2268 NM_032300 84260 Hs.410924 NM_032300 ENSG00000139437 TCHP TpMs trichoplein keratin filament binding protein-coding 123-66 chr3 61404315 61404618 + 0.666667 NA Intergenic L4_A_Mam|LINE|RTE-X -153005 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 193-21 chr17 61587871 61588231 + 0.666667 NA Intergenic Intergenic 3168 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 133-40 chr2 10001866 10002105 + 0.666667 NA 3' UTR (NM_198182, exon 16 of 16) 3' UTR (NM_198182, exon 16 of 16) 41416 NR_135558 101929882 Hs.405158 NR_135558 LOC101929882 - uncharacterized LOC101929882 ncRNA 212.833-6 chr14 81833269 81833888 + 0.666667 NA Intergenic Intergenic -90440 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 170.333-74 chr8 133986176 133986600 + 0.666667 NA Intergenic AluSx1|SINE|Alu 99892 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 143.667-102 chr8 70386473 70386877 + 0.666667 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 16715 NM_001321713 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 165-45 chr5 38056655 38057027 + 0.666667 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 31144 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 173-57 chr8 63211698 63212167 + 0.666667 NA non-coding (NR_102434, exon 4 of 4) non-coding (NR_102434, exon 4 of 4) 42929 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 204.167-25 chr5 28521838 28522200 + 0.666667 NA Intergenic L1P4|LINE|L1 -234354 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 186-39 chr4 93237495 93237822 + 0.666667 NA intron (NM_001286838, intron 6 of 14) intron (NM_001286838, intron 6 of 14) -591095 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 207.667-2 chr1 174428438 174428795 + 0.666667 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) -19348 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 163.5-51 chr4 76446553 76446832 + 0.666667 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 11463 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 120-42 chr17 64531486 64531761 + 0.666667 NA intron (NR_133644, intron 13 of 19) intron (NR_133644, intron 13 of 19) 24646 NM_001316990 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 182.667-42 chr3 98854710 98855182 + 0.666667 NA intron (NM_080927, intron 2 of 15) L1M5|LINE|L1 46749 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 173.834-7 chr6 146508047 146508672 + 0.666667 NA Intergenic LTR84b|LTR|ERVL -35474 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 162.5-51 chr3 190889809 190890113 + 0.666667 NA Intergenic L2|LINE|L2 12031 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 202.167-38 chr8 124346719 124347231 + 0.666667 NA intron (NM_194291, intron 1 of 6) intron (NM_194291, intron 1 of 6) 25724 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 217-14 chr2 56288318 56288808 + 0.666667 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -102793 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 146.833-29 chr2 107507042 107507386 + 0.666667 NA Intergenic L1MC2|LINE|L1 -22205 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 161-77 chr8 84757049 84757481 + 0.666667 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 51338 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 166.5 chr1 115095367 115095701 + 0.666667 NA Intergenic Charlie2a|DNA|hAT-Charlie -6031 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 122.333-27 chr13 34767706 34767946 + 0.666667 NA Intergenic AluJo|SINE|Alu -127141 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 192.667-15 chr12 111488976 111489399 + 0.666667 NA intron (NR_132311, intron 14 of 23) intron (NR_132311, intron 14 of 23) 54325 NM_001291424 10019 Hs.506784 NM_005475 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 208.833-24 chr3 100661177 100661618 + 0.666667 NA intron (NM_001308362, intron 8 of 9) intron (NM_001308362, intron 8 of 9) 25859 NM_001308362 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 119.667-46 chr2 145435572 145435862 + 0.666667 NA Intergenic L2a|LINE|L2 767750 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 123.833-52 chr6 57193130 57193635 + 0.666667 NA intron (NR_103822, intron 3 of 3) L4_B_Mam|LINE|RTE-X 21056 NM_004282 9532 Hs.745046 NM_004282 ENSG00000112208 BAG2 BAG-2|dJ417I1.2 BCL2 associated athanogene 2 protein-coding 265.667-18 chr6 43733737 43734294 + 0.666667 NA Intergenic Intergenic -36194 NM_001171627 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 187.333-6 chr10 31394346 31394906 + 0.666667 NA intron (NM_001323646, intron 4 of 11) L1ME3A|LINE|L1 5129 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 195.333-54 chr7 83814449 83814878 + 0.666667 NA Intergenic MER113|DNA|hAT-Charlie -165524 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 116.5-59 chr4 65552509 65553033 + 0.666667 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 116717 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 207-20 chr18 9986867 9987251 + 0.666667 NA Intergenic Intergenic 73043 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 127.333-64 chr20 52356167 52356435 + 0.666667 NA Intergenic Intergenic -164316 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 160.167-43 chr3 85286383 85286694 + 0.666667 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -99172 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 114.667-98 chr5 3268652 3268893 + 0.666667 NA Intergenic Intergenic 90937 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 148.333-11 chr10 19358241 19358576 + 0.666667 NA intron (NM_001142308, intron 26 of 39) intron (NM_001142308, intron 26 of 39) 309607 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 128.667-34 chr14 26858394 26858685 + 0.666667 NA Intergenic MIRb|SINE|MIR -14594 NR_110041 101927081 Hs.97955 NR_110041 ENSG00000257612 MIR4307HG - MIR4307 host gene ncRNA 193.667-12 chr14 47621780 47622301 + 0.666667 NA intron (NM_001113498, intron 1 of 16) MIRb|SINE|MIR 52914 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 141-61 chr3 182724401 182724642 + 0.666667 NA Intergenic LTR25-int|LTR|ERV1 -68983 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 125.5-4 chr1 210474635 210474892 + 0.666667 NA intron (NM_001122834, intron 8 of 11) intron (NM_001122834, intron 8 of 11) 145397 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 119.333-6 chr1 169640867 169641112 + 0.666667 NA Intergenic Intergenic -10865 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 125-73 chr6 50053892 50054265 + 0.666667 NA Intergenic Intergenic -4149 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 189.333-27 chr2 134896859 134897293 + 0.666667 NA intron (NR_036549, intron 1 of 4) L1MB7|LINE|L1 21530 NR_036549 100129961 Hs.729028 NR_036549 CCNT2-AS1 - CCNT2 antisense RNA 1 ncRNA 233.667-18 chr4 42743358 42743775 + 0.666667 NA Intergenic Intergenic -86461 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 118-120 chr8 108971514 108971845 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -114949 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 146.833-25 chr18 66552958 66553443 + 0.666667 NA intron (NM_001271028, intron 4 of 9) (ATT)n|Simple_repeat|Simple_repeat 50890 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 113.5-42 chr17 67658826 67659170 + 0.666667 NA intron (NM_181671, intron 6 of 9) intron (NM_181671, intron 6 of 9) -58835 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 189.834-9 chr6 55324466 55325058 + 0.666667 NA Intergenic Intergenic -2707 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 114.5-55 chr2 234162353 234162640 + 0.666667 NA Intergenic Intergenic 111794 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 145 chr1 21227228 21227554 + 0.666667 NA intron (NM_001113347, intron 13 of 16) intron (NM_001113347, intron 13 of 16) -50494 NM_001198801 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 148-66 chr5 80875769 80876139 + 0.666667 NA 3' UTR (NM_002439, exon 24 of 24) 3' UTR (NM_002439, exon 24 of 24) -84409 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 122.333-9 chr10 43926423 43926757 + 0.666667 NA intron (NR_033846, intron 2 of 7) intron (NR_033846, intron 2 of 7) 14188 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 226.833-7 chr14 20991503 20991966 + 0.666667 NA intron (NM_022734, intron 3 of 13) AluSg|SINE|Alu 1754 NM_001029991 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 180-40 chr5 9336981 9337357 + 0.666667 NA intron (NM_003966, intron 4 of 22) intron (NM_003966, intron 4 of 22) -174164 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 202.833-16 chr2 183034401 183034839 + 0.666667 NA intron (NM_205842, intron 1 of 31) intron (NM_205842, intron 1 of 31) 3837 NM_013436 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 117.333-22 chr13 82844733 82844910 + 0.666667 NA Intergenic L1ME1|LINE|L1 1037572 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 301.667-4 chr12 32767309 32768056 + 0.666667 NA Intergenic AluYa5|SINE|Alu -11785 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 141.167-49 chr22 37668625 37668916 + 0.666667 NA Intergenic Intergenic -6866 NM_002305 3956 Hs.445351 NM_002305 ENSG00000100097 LGALS1 GAL1|GBP galectin 1 protein-coding 136.667-68 chr3 191388733 191388959 + 0.666667 NA intron (NM_178335, intron 10 of 11) intron (NM_178335, intron 10 of 11) -36678 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 124-92 chr8 20025736 20026003 + 0.666667 NA Intergenic L1M5|LINE|L1 86616 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 163-23 chr17 63611334 63611829 + 0.666667 NA Intergenic Intergenic 10686 NM_016360 51204 Hs.174134 NM_016360 ENSG00000136463 TACO1 CCDC44 translational activator of cytochrome c oxidase I protein-coding 157.667-49 chr4 17543650 17544043 + 0.666667 NA Intergenic AluY|SINE|Alu 28681 NM_001079827 645104 Hs.631526 NM_001079827 ENSG00000249581 CLRN2 - clarin 2 protein-coding 178-35 chr3 141933875 141934384 + 0.666667 NA Intergenic Intergenic 57486 NM_001679 483 Hs.477789 NM_001679 ENSG00000069849 ATP1B3 ATPB-3|CD298 ATPase Na+/K+ transporting subunit beta 3 protein-coding 124.667-95 chr5 44444099 44444498 + 0.666667 NA Intergenic Intergenic -54878 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 137.667 chr1 26956286 26956647 + 0.666667 NA intron (NM_152365, intron 1 of 3) L1MC4|LINE|L1 4002 NM_152365 126695 Hs.188881 NM_152365 ENSG00000175707 KDF1 C1orf172|ECTD12 keratinocyte differentiation factor 1 protein-coding 124.333-63 chr3 82626949 82627170 + 0.666667 NA Intergenic MIRc|SINE|MIR 640917 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 164.333-11 chr10 76420204 76420496 + 0.666667 NA intron (NM_001305581, intron 6 of 6) L1ME3A|LINE|L1 -467694 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 229.167-19 chr17 30459545 30460292 + 0.666667 NA intron (NM_001304, intron 17 of 20) intron (NM_001304, intron 17 of 20) -17490 NM_001007024 9527 Hs.462680 NM_004871 ENSG00000108587 GOSR1 GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28 golgi SNAP receptor complex member 1 protein-coding 146.5-30 chr15 59015828 59016170 + 0.666667 NA intron (NM_001270530, intron 1 of 13) AluSz6|SINE|Alu 27853 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 146.833-30 chr2 172824135 172824632 + 0.666667 NA intron (NM_001100397, intron 1 of 27) intron (NM_001100397, intron 1 of 27) 2796 NM_001100397 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 146.667-45 chr18 13385122 13385363 + 0.666667 NA intron (NM_181482, intron 2 of 5) L1MA8|LINE|L1 42292 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 128.833-11 chr1 188911547 188911920 + 0.666667 NA Intergenic Intergenic 1468105 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 148-86 chrUn_KI270438v1 112109 112478 + 0.666667 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 210.667-20 chr17 60842785 60843124 + 0.666667 NA intron (NM_001330413, intron 7 of 25) AluJr|SINE|Alu 165103 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 187.667-30 chr2 205016745 205017114 + 0.666667 NA intron (NM_205863, intron 3 of 21) intron (NM_205863, intron 3 of 21) 471454 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 168-15 chr14 35128419 35128824 + 0.666667 NA intron (NM_014672, intron 4 of 7) L1M1|LINE|L1 6069 NM_014672 9692 Hs.458487 NM_014672 ENSG00000100890 PRORP KIAA0391|MRPP3 protein only RNase P catalytic subunit protein-coding 173.833-34 chr22 46270604 46271172 + 0.666667 NA intron (NM_017931, intron 2 of 13) AluSx|SINE|Alu 2880 NM_017931 55020 Hs.435832 NM_017931 ENSG00000075234 TTC38 LL22NC03-5H6.5 tetratricopeptide repeat domain 38 protein-coding 180-4 chr1 234891682 234892155 + 0.666667 NA Intergenic Intergenic 72081 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 135.333-50 chr20 40199827 40200172 + 0.666667 NA Intergenic Intergenic 195538 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 158.667-25 chr13 89114553 89114947 + 0.666667 NA Intergenic Intergenic -120541 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 263-5 chr12 67399903 67400338 + 0.666667 NA Intergenic L2a|LINE|L2 42439 NR_146500 102724433 NR_146500 ENSG00000256172 LINC02420 - long intergenic non-protein coding RNA 2420 ncRNA 164.334-9 chr5 167988432 167989149 + 0.666667 NA intron (NM_001368145, intron 3 of 26) intron (NM_001368145, intron 3 of 26) -177055 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 166.333-46 chr21 23235469 23235793 + 0.666667 NA Intergenic Intergenic 149204 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 203-39 chr6 64323882 64324370 + 0.666667 NA intron (NM_001292009, intron 29 of 43) LTR16A|LTR|ERVL 517290 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 214.833-26 chr9 86517883 86518481 + 0.666667 NA Intergenic L1PA10|LINE|L1 -163772 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 215.333-15 chr14 83826279 83826687 + 0.666667 NA Intergenic Intergenic 1183851 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 124.167-97 chr9 96221704 96222220 + 0.666667 NA Intergenic Intergenic -24501 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 183.167-4 chr1 115487146 115487803 + 0.666667 NA Intergenic L1MC2|LINE|L1 -149238 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 229.333-20 chr2 223971538 223972062 + 0.666667 NA Intergenic Intergenic 14337 NM_022915 65080 Hs.203559 NM_022915 ENSG00000135900 MRPL44 COXPD16|L44MT|MRP-L44 mitochondrial ribosomal protein L44 protein-coding 155.667-34 chr2 14186611 14187001 + 0.666667 NA Intergenic Intergenic 214152 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 134.167-69 chr5 86004966 86005351 + 0.666667 NA Intergenic MER113A|DNA|hAT-Charlie -277286 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 174.667-22 chr15 71882790 71883186 + 0.666667 NA intron (NM_006901, intron 28 of 41) AluJb|SINE|Alu 72434 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 129-27 chr12 23612280 23612614 + 0.666667 NA intron (NM_152989, intron 11 of 17) Charlie15b|DNA|hAT-Charlie -27861 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 156.333-64 chr3 121743596 121744008 + 0.666667 NA intron (NM_001256486, intron 1 of 21) intron (NM_001256486, intron 1 of 21) 5939 NM_001256486 2804 Hs.213389 NM_004487 ENSG00000173230 GOLGB1 GCP|GCP372|GOLIM1 golgin B1 protein-coding 172.333-24 chr15 87760895 87761240 + 0.666667 NA Intergenic Intergenic 184138 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 221.5-40 chr9 17651887 17652429 + 0.666667 NA intron (NM_003026, intron 1 of 8) L1M5|LINE|L1 73092 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 155.5-40 chr4 37968174 37968446 + 0.666667 NA intron (NM_001253912, intron 2 of 20) intron (NM_001253912, intron 2 of 20) 7912 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 127.333-4 chr1 106755637 106755838 + 0.666667 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -62502 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 140-5 chr1 236626000 236626443 + 0.666667 NA Intergenic Intergenic -21705 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 141.667-109 chr8 105214907 105215254 + 0.666667 NA Intergenic LTR33|LTR|ERVL -103358 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 229.333-4 chr10 44357082 44357489 + 0.666667 NA Intergenic Intergenic 27812 NM_199168 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 142.833-17 chr15 65787507 65787854 + 0.666667 NA intron (NM_005848, intron 1 of 31) intron (NM_005848, intron 1 of 31) 4613 NM_005848 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 224.167-15 chr2 196803408 196804002 + 0.666667 NA TTS (NM_213608) TTS (NM_213608) -4022 NM_012086 9330 Hs.470996 NM_012086 ENSG00000119041 GTF3C3 TFIIIC102|TFIIICgamma|TFiiiC2-102 general transcription factor IIIC subunit 3 protein-coding 150.167-52 chr5 59731723 59732181 + 0.666667 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -28249 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 187.333-27 chr18 39551041 39551519 + 0.666667 NA intron (NR_024391, intron 2 of 3) Tigger13a|DNA|TcMar-Tigger 70895 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 173.5-46 chr5 110433421 110433983 + 0.666667 NA intron (NM_001039763, intron 12 of 13) L1P4|LINE|L1 80213 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 275.333-8 chr12 2924795 2925354 + 0.666667 NA intron (NM_003324, intron 4 of 10) AluY|SINE|Alu 34183 NM_003324 7289 Hs.655333 NM_003324 ENSG00000078246 TULP3 TUBL3 TUB like protein 3 protein-coding 148.333-24 chr12 53857729 53858169 + 0.666667 NA Intergenic L1MB8|LINE|L1 -80882 NM_017410 3229 Hs.118608 NM_017410 ENSG00000123364 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 244.667 chr10 68299865 68300371 + 0.666667 NA intron (NM_001033083, intron 2 of 8) AluSx3|SINE|Alu -31575 NM_001322438 3189 Hs.643472 NM_012207 ENSG00000096746 HNRNPH3 2H9|HNRPH3 heterogeneous nuclear ribonucleoprotein H3 protein-coding 218-24 chr2 41142001 41142578 + 0.666667 NA Intergenic Intergenic -629854 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 220.833-9 chr2 122303765 122304163 + 0.666667 NA Intergenic L1PA15|LINE|L1 548313 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 126-6 chr1 189368256 189368491 + 0.666667 NA Intergenic Intergenic 1107637 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 132.667-105 chrX 70615950 70616342 + 0.666667 NA intron (NM_001003811, intron 21 of 30) L1M1|LINE|L1 -160152 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 152-24 chr15 93454056 93454434 + 0.666667 NA Intergenic AluJb|SINE|Alu 248179 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 136.333-11 chr10 47120179 47120498 + 0.666667 NA Intergenic L1ME2|LINE|L1 -179859 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 168-26 chr2 4469538 4469844 + 0.666667 NA Intergenic Intergenic 186531 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 115-27 chr14 52543827 52544069 + 0.666667 NA intron (NM_001160047, intron 2 of 20) intron (NM_001160047, intron 2 of 20) 8557 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 172.667-33 chr17 73665128 73665560 + 0.666667 NA Intergenic MER134|DNA?|DNA? -20899 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 131.333-78 chr4 70638718 70639237 + 0.666667 NA intron (NM_001368133, intron 1 of 1) AluSz6|SINE|Alu 1266 NM_001368133 10117 Hs.667018 NM_031889 ENSG00000132464 ENAM ADAI|AI1C|AIH2 enamelin protein-coding 224.167-18 chr4 11392664 11393039 + 0.666667 NA TTS (NM_005114) TTS (NM_005114) 24024 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 187.333-71 chr6 44985438 44985890 + 0.666667 NA intron (NM_181356, intron 8 of 12) intron (NM_181356, intron 8 of 12) 212106 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 138-99 chr7 31751224 31751512 + 0.666667 NA 3' UTR (NM_001191058, exon 19 of 19) 3' UTR (NM_001191058, exon 19 of 19) 64153 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 133.167-74 chrX 116118692 116119162 + 0.666667 NA Intergenic L1M1|LINE|L1 -51817 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 183.833-6 chr11 7198719 7199255 + 0.666667 NA Intergenic L1ME3Cz|LINE|L1 -35779 NR_031683 100313774 NR_031683 ENSG00000221703 MIR302E MIRN302E microRNA 302e ncRNA 121.5-15 chr10 43221224 43221420 + 0.666667 NA intron (NM_145313, intron 1 of 12) intron (NM_145313, intron 1 of 12) 8417 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 214.833-18 chr5 44801366 44801913 + 0.666667 NA intron (NR_109863, intron 1 of 3) intron (NR_109863, intron 1 of 3) 7154 NR_109862 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 216.667-40 chr6 62570221 62570727 + 0.666667 NA Intergenic Intergenic -284247 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 239.5-16 chr3 97882333 97882873 + 0.666667 NA intron (NM_153605, intron 7 of 21) intron (NM_153605, intron 7 of 21) 60592 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 162.667-69 chr6 47432602 47432977 + 0.666667 NA Intergenic Tigger7|DNA|TcMar-Tigger -45000 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 157.167-61 chr8 8866960 8867456 + 0.666667 NA intron (NM_004225, intron 1 of 2) intron (NM_004225, intron 1 of 2) 26422 NM_004225 9258 Hs.379414 NM_004225 ENSG00000147324 MFHAS1 LRRC65|MASL1|ROCO4 malignant fibrous histiocytoma amplified sequence 1 protein-coding 178.333-11 chr12 58641294 58641678 + 0.666667 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 49784 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 150.667-56 chr20 22402229 22402596 + 0.666667 NA intron (NR_027090, intron 1 of 2) intron (NR_027090, intron 1 of 2) 18231 NR_027090 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 200.667-9 chr10 64217454 64217851 + 0.666667 NA Intergenic L2a|LINE|L2 -607876 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 125.5-46 chr21 30247221 30247624 + 0.666667 NA Intergenic L1ME3A|LINE|L1 -31325 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 135.667-22 chr11 4829693 4830081 + 0.666667 NA Intergenic Intergenic 8566 NM_001004753 119694 Hs.553562 NM_001004753 ENSG00000176925 OR51F2 OR11-23 olfactory receptor family 51 subfamily F member 2 protein-coding 173.834-8 chr9 105592305 105592846 + 0.666667 NA intron (NM_001351502, intron 5 of 13) AluSq4|SINE|Alu 34444 NR_147214 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 156-71 chr5 119943208 119943709 + 0.666667 NA Intergenic Intergenic 313899 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 141.333-18 chr12 9918699 9919060 + 0.666667 NA intron (NM_207375, intron 3 of 4) L1PA12|LINE|L1 13491 NM_207375 387836 Hs.527665 NM_207375 ENSG00000188393 CLEC2A INPE5792|KACL|PILAR|UNQ5792 C-type lectin domain family 2 member A protein-coding 125.333-26 chr11 33473398 33473694 + 0.666667 NA intron (NM_012194, intron 1 of 20) intron (NM_012194, intron 1 of 20) 97438 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 150.833-16 chr17 59867425 59867779 + 0.666667 NA intron (NM_001193612, intron 6 of 8) AluJr|SINE|Alu 25341 NM_016261 51174 Hs.463638 NM_016261 ENSG00000108423 TUBD1 TUBD tubulin delta 1 protein-coding 160.333-4 chr1 247558882 247559264 + 0.666667 NA intron (NM_145278, intron 2 of 4) MIRb|SINE|MIR 9939 NM_145278 148823 Hs.732113 NM_145278 ENSG00000169224 GCSAML C1orf150 germinal center associated signaling and motility like protein-coding 145.167-22 chr12 133014750 133015007 + 0.666667 NA 3' UTR (NM_001330513, exon 5 of 5) 3' UTR (NM_001330513, exon 5 of 5) 22344 NR_110091 101928597 Hs.638942 NR_110091 ENSG00000246394 ZNF84-DT - ZNF84 divergent transcript ncRNA 154.333-49 chr3 88541233 88541562 + 0.666667 NA Intergenic AluSx|SINE|Alu 202941 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 157-3 chr1 80899020 80899470 + 0.666667 NA Intergenic Intergenic 257958 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 161.667-3 chr1 85086087 85086473 + 0.666667 NA intron (NM_001288563, intron 7 of 21) intron (NM_001288563, intron 7 of 21) 23953 NM_145172 126820 Hs.97933 NM_145172 ENSG00000162643 WDR63 DIC3|NYD-SP29 WD repeat domain 63 protein-coding 158.833-33 chr21 19221932 19222362 + 0.666667 NA Intergenic Intergenic -462335 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 114-44 chr14 83421272 83421563 + 0.666667 NA Intergenic Intergenic 778785 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 327.5-6 chr9 33965343 33966081 + 0.666667 NA intron (NR_163243, intron 5 of 24) L1M5|LINE|L1 -12858 NR_003685 100113379 NR_003685 ENSG00000238886 SNORD121A - small nucleolar RNA, C/D box 121A snoRNA 169-36 chr3 110902465 110902949 + 0.666667 NA Intergenic Intergenic 167252 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 113.333-82 chr4 107911899 107912144 + 0.666667 NA 3' UTR (NM_001136258, exon 7 of 7) 3' UTR (NM_001136258, exon 7 of 7) 18757 NM_152621 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 146.667-22 chr12 39637900 39638207 + 0.666667 NA intron (NM_001031748, intron 1 of 12) intron (NM_001031748, intron 1 of 12) 11870 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 247.333-9 chr18 21454796 21455519 + 0.666667 NA intron (NM_001142966, intron 15 of 32) intron (NM_001142966, intron 15 of 32) 145547 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 165.667-5 chr1 158719861 158720142 + 0.666667 NA Intergenic MIR|SINE|MIR -1886 NM_001005327 391114 Hs.554488 NM_001005327 ENSG00000203757 OR6K3 OR1-18 olfactory receptor family 6 subfamily K member 3 protein-coding 140.667-83 chr8 6890216 6890483 + 0.666667 NA Intergenic Intergenic -12413 NM_005218 1672 Hs.32949 NM_005218 ENSG00000164825 DEFB1 BD1|DEFB-1|DEFB101|HBD1 defensin beta 1 protein-coding 153.167-39 chr4 102143490 102143782 + 0.666667 NA Intergenic Intergenic 180676 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 154.5-70 chr8 55217910 55218389 + 0.666667 NA intron (NM_052898, intron 1 of 2) MIRb|SINE|MIR 116121 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 131.5-53 chr3 178328678 178329004 + 0.666667 NA Intergenic Intergenic -90360 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 117.833-54 chr4 4745281 4745560 + 0.666667 NA Intergenic L2c|LINE|L2 -16340 NR_125892 101928279 Hs.586152 NR_125892 LOC101928279 - uncharacterized LOC101928279 ncRNA 114.333-41 chr15 50951365 50951630 + 0.666667 NA intron (NM_001252127, intron 13 of 20) L1ME3G|LINE|L1 7368 NR_027642 100132724 Hs.730493 NR_027642 DCAF13P3 - DDB1 and CUL4 associated factor 13 pseudogene 3 pseudo 120.667-18 chr11 48176296 48176506 + 0.666667 NA Intergenic Intergenic -40409 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 135.333-52 chr3 143779306 143779631 + 0.666667 NA intron (NM_173653, intron 4 of 15) AluSx|SINE|Alu 69000 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 141.667-55 chr20 40650856 40651213 + 0.666667 NA Intergenic MER124|DNA?|DNA? 38202 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 247.667-25 chr8 117381503 117382057 + 0.666667 NA Intergenic AluJb|SINE|Alu -138933 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 133.167-31 chr2 108491095 108491315 + 0.666667 NA intron (NR_028063, intron 17 of 21) intron (NR_028063, intron 17 of 21) 41999 NR_028063 9648 Hs.436505 NM_181453 ENSG00000135968 GCC2 GCC185|RANBP2L4|REN53 GRIP and coiled-coil domain containing 2 protein-coding 172.333-78 chrX 49061556 49061953 + 0.666667 NA intron (NM_001163321, intron 1 of 10) intron (NM_001163321, intron 1 of 10) 2755 NM_001163321 90060 Hs.522643 NM_033626 ENSG00000147144 CCDC120 JM11 coiled-coil domain containing 120 protein-coding 152.333-65 chr8 43713674 43714042 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 421416 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 114.333-54 chr18 8585169 8585406 + 0.666667 NA Intergenic Intergenic -24158 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 170-6 chr10 105066195 105066554 + 0.666667 NA intron (NM_014978, intron 5 of 26) intron (NM_014978, intron 5 of 26) -400158 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 161-48 chr4 161761635 161761979 + 0.666667 NA intron (NM_001128428, intron 5 of 14) intron (NM_001128428, intron 5 of 14) -260926 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 176-44 chr7 116193684 116194098 + 0.666667 NA Intergenic Intergenic -16648 NM_015641 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 329.333-2 chr17 26883829 26884446 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 205104 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 223-21 chr4 36647333 36647703 + 0.666667 NA Intergenic Intergenic -5618 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 129.167-11 chr10 106546113 106546352 + 0.666667 NA Intergenic L1MEf|LINE|L1 406067 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 126.167-83 chr7 24247090 24247507 + 0.666667 NA Intergenic Intergenic -36892 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 129.833-58 chr6 15288284 15288774 + 0.666667 NA intron (NM_001267040, intron 1 of 17) intron (NM_001267040, intron 1 of 17) 39674 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 120-53 chr2 51512387 51512605 + 0.666667 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 479895 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 148.667-16 chr12 118667206 118667540 + 0.666667 NA Intergenic AluJr|SINE|Alu 94306 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 231.5-26 chrX 91287831 91288411 + 0.666667 NA Intergenic L1M1|LINE|L1 -146718 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 159.333-19 chr11 90929496 90929973 + 0.666667 NA Intergenic HUERS-P2-int|LTR|ERV1 -60532 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 125-63 chr5 28572388 28572618 + 0.666667 NA Intergenic L2a|LINE|L2 -284838 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 195.333-45 chr5 88858467 88858917 + 0.666667 NA intron (NM_001131005, intron 2 of 10) intron (NM_001131005, intron 2 of 10) 24492 NM_001364347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 158-23 chr17 38956961 38957504 + 0.666667 NA exon (NM_001008777, exon 4 of 11) exon (NM_001008777, exon 4 of 11) 10171 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 251.167-6 chr2 53735628 53736218 + 0.666667 NA intron (NM_001201965, intron 2 of 8) L1M5|LINE|L1 -31860 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 137.833-54 chr8 119374659 119374950 + 0.666667 NA Intergenic Intergenic -41642 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 150.5-25 chr14 69052483 69052860 + 0.666667 NA 3' UTR (NM_001284206, exon 9 of 9) 3' UTR (NM_001284206, exon 9 of 9) 72989 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 115-37 chr2 53993309 53993532 + 0.666667 NA intron (NM_001320587, intron 2 of 5) intron (NM_001320587, intron 2 of 5) 22307 NM_001320586 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 131-46 chr4 92849920 92850164 + 0.666667 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 545643 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 128.167-53 chr3 80407498 80407898 + 0.666667 NA Intergenic Intergenic -357199 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 142.833-73 chr8 52285990 52286312 + 0.666667 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) -31659 NM_001352842 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 139.667-69 chr4 27667461 27667694 + 0.666667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 450098 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 131.333-38 chr18 4277016 4277337 + 0.666667 NA intron (NR_036489, intron 2 of 2) intron (NR_036489, intron 2 of 2) 12574 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 222.167-33 chr6 134327391 134327903 + 0.666667 NA Intergenic L1ME3G|LINE|L1 -9589 NM_001143676 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 208.333-21 chr2 10657411 10657953 + 0.666667 NA intron (NM_001261394, intron 10 of 19) intron (NM_001261394, intron 10 of 19) 32293 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 128.667-66 chr2 170678633 170678948 + 0.666667 NA Intergenic Intergenic 35777 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 199-26 chr5 72389980 72390348 + 0.666667 NA Intergenic Intergenic 69791 NM_024754 79810 Hs.126906 NM_024754 ENSG00000049883 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 146.167-14 chr13 97173300 97173864 + 0.666667 NA intron (NR_125725, intron 1 of 1) L2c|LINE|L2 6040 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 196.834-2 chr12 23886786 23887477 + 0.666667 NA intron (NM_001330785, intron 2 of 14) intron (NM_001330785, intron 2 of 14) 62539 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 140.5-32 chr18 1093958 1094215 + 0.666667 NA Intergenic Intergenic -166093 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 115.833-80 chr8 119516161 119516440 + 0.666667 NA Intergenic Intergenic 76708 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 240.667-12 chr14 49518301 49518936 + 0.666667 NA Intergenic Intergenic 67762 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 168.833-6 chr10 54255436 54255715 + 0.666667 NA intron (NM_001354411, intron 8 of 34) intron (NM_001354411, intron 8 of 34) -230655 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 131.333-45 chr2 15580111 15580465 + 0.666667 NA Intergenic Intergenic -11580 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 144.333-92 chr8 132735698 132735982 + 0.666667 NA intron (NM_144649, intron 5 of 9) MER113|DNA|hAT-Charlie 24742 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 207.666-2 chr10 43907676 43908267 + 0.666667 NA Intergenic A-rich|Low_complexity|Low_complexity -1325 NR_033846 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 140.167-27 chr16 87792013 87792315 + 0.666667 NA Intergenic Intergenic -13016 NR_120309 102724467 Hs.587857 NR_120309 LOC102724467 - uncharacterized LOC102724467 ncRNA 267.167 chr1 43955797 43956294 + 0.666667 NA intron (NM_014652, intron 2 of 19) MLT1C-int|LTR|ERVL-MaLR 9095 NM_014652 9670 Hs.158497 NM_014652 ENSG00000117408 IPO13 IMP13|KAP13|LGL2|RANBP13 importin 13 protein-coding 289.333-7 chr21 20677572 20678187 + 0.666667 NA Intergenic Intergenic 125229 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 161.667-48 chr22 26976616 26977015 + 0.666667 NA Intergenic Intergenic 73523 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 221.666-6 chr8 111083566 111084188 + 0.666667 NA Intergenic Intergenic -56444 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 117.833-30 chr14 84971106 84971475 + 0.666667 NA Intergenic AluSq2|SINE|Alu -300642 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 156-30 chr14 77537405 77537841 + 0.666667 NA intron (NM_004863, intron 9 of 11) intron (NM_004863, intron 9 of 11) -38807 NM_182509 145501 Hs.29742 NM_182509 ENSG00000100593 ISM2 TAIL1|THSD3 isthmin 2 protein-coding 172.333-35 chr2 81748403 81748788 + 0.666667 NA Intergenic L1MB7|LINE|L1 -281649 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 119.333-87 chr5 126928531 126928988 + 0.666667 NA intron (NM_178450, intron 1 of 4) intron (NM_178450, intron 1 of 4) 101799 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 175-24 chr15 76147512 76147873 + 0.666667 NA intron (NM_152335, intron 3 of 10) intron (NM_152335, intron 3 of 10) 33794 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 174-35 chr22 23007557 23008162 + 0.666667 NA Intergenic Intergenic -62660 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 168-33 chr21 29512811 29513247 + 0.666667 NA Intergenic MER77|LTR|ERVL 16982 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 185.167-22 chr2 81496519 81496935 + 0.666667 NA Intergenic Intergenic -29781 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 131.333-86 chr5 25551888 25552120 + 0.666667 NA Intergenic Intergenic 361051 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 171.333 chr1 9050906 9051228 + 0.666667 NA intron (NM_003039, intron 3 of 11) intron (NM_003039, intron 3 of 11) 18568 NM_001328620 6518 Hs.530003 NM_003039 ENSG00000142583 SLC2A5 GLUT-5|GLUT5 solute carrier family 2 member 5 protein-coding 158.167-51 chr8 127326478 127326917 + 0.666667 NA intron (NR_117099, intron 2 of 3) L1MEf|LINE|L1 -73702 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 153.333-53 chr3 98614445 98614736 + 0.666667 NA Intergenic ERVL-B4-int|LTR|ERVL -20979 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 134.333-84 chr4 56489841 56490079 + 0.666667 NA intron (NR_151856, intron 13 of 19) intron (NR_151856, intron 13 of 19) -15249 NM_206919 132946 Hs.444449 NM_206919 ENSG00000196503 ARL9 - ADP ribosylation factor like GTPase 9 protein-coding 224.667-17 chr2 169806678 169807174 + 0.666667 NA intron (NM_003142, intron 5 of 11) intron (NM_003142, intron 5 of 11) 7624 NM_001294145 6741 Hs.632535 NM_003142 ENSG00000138385 SSB LARP3|La|La/SSB small RNA binding exonuclease protection factor La protein-coding 139.333-62 chr3 158062664 158062987 + 0.666667 NA Intergenic Intergenic 43338 NM_006884 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 119.5-104 chr8 145001341 145001545 + 0.666667 NA intron (NR_023392, intron 1 of 4) L2a|LINE|L2 -1368 NR_026974 286103 Hs.359978 NM_001039382 ENSG00000255559 ZNF252P-AS1 C8orf77 ZNF252P antisense RNA 1 ncRNA 115.5-29 chr12 128815022 128815351 + 0.666667 NA intron (NM_145648, intron 1 of 7) intron (NM_145648, intron 1 of 7) 8772 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 124.667-67 chr20 20268512 20268785 + 0.666667 NA intron (NM_015585, intron 21 of 26) intron (NM_015585, intron 21 of 26) -99456 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 193.833-10 chr11 85566545 85566892 + 0.666667 NA intron (NM_001142699, intron 3 of 27) MLT1A0|LTR|ERVL-MaLR 60552 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 122.333-90 chr5 19853427 19853687 + 0.666667 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 32715 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 120.333-74 chr3 89906713 89906937 + 0.666667 NA Intergenic MIRc|SINE|MIR 799204 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 206.5-19 chr3 175638207 175638713 + 0.666667 NA intron (NM_207015, intron 11 of 13) intron (NM_207015, intron 11 of 13) 137873 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 171-33 chr3 17348663 17349000 + 0.666667 NA intron (NM_014744, intron 13 of 21) intron (NM_014744, intron 13 of 21) 351189 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 227.167-32 chr8 86750894 86751540 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger -7542 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 130.333-54 chr20 12051541 12051834 + 0.666667 NA Intergenic Intergenic 133794 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 139.167-44 chr2 179186334 179186578 + 0.666667 NA intron (NM_178123, intron 2 of 17) intron (NM_178123, intron 2 of 17) 78376 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 243.833-6 chr12 43898842 43899514 + 0.666667 NA intron (NM_001286213, intron 2 of 6) intron (NM_001286213, intron 2 of 6) 63097 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 191.667-42 chr4 43869119 43869618 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -147493 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 130.834 chr1 89131502 89132016 + 0.666667 NA TTS (NM_207398) TTS (NM_207398) -5645 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 241-25 chr9 71457116 71457788 + 0.666667 NA Intergenic Intergenic -10481 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 169.333-49 chr3 115089121 115089532 + 0.666667 NA intron (NM_001348800, intron 1 of 11) MIRb|SINE|MIR 10982 NM_001348804 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 185.667 chr1 52657232 52657648 + 0.666667 NA TTS (NM_001042693) TTS (NM_001042693) 24272 NM_001042693 348378 Hs.424589 NM_001042693 ENSG00000182183 SHISAL2A FAM159A|PRO7171|WWLS2783 shisa like 2A protein-coding 243-27 chr5 128568704 128569171 + 0.666667 NA Intergenic AluSq2|SINE|Alu -30692 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 158.833-3 chr1 238768929 238769211 + 0.666667 NA Intergenic MLT1L|LTR|ERVL-MaLR -283053 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 169.667-52 chr3 129626016 129626475 + 0.666667 NA Intergenic L1ME1|LINE|L1 -19506 NM_015103 23129 Hs.301685 NM_015103 ENSG00000004399 PLXND1 PLEXD1 plexin D1 protein-coding 128.333-96 chr5 71928322 71928624 + 0.666667 NA Intergenic L1PB1|LINE|L1 -179002 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 130.333-72 chr5 15967100 15967501 + 0.666667 NA Intergenic Intergenic 32118 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 135.833-43 chr21 29610756 29611013 + 0.666667 NA intron (NM_000830, intron 7 of 16) LTR37-int|LTR|ERV1 14844 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 246.5-17 chr4 66693615 66694370 + 0.666667 NA Intergenic L1M7|LINE|L1 417168 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 145-58 chr3 119742714 119743040 + 0.666667 NA intron (NM_033364, intron 13 of 17) intron (NM_033364, intron 13 of 17) -37607 NM_003889 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 129.667-40 chr15 67180402 67180774 + 0.666667 NA intron (NM_001145103, intron 5 of 8) intron (NM_001145103, intron 5 of 8) 14433 NM_001145104 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 114.667-25 chr13 46513486 46513709 + 0.666667 NA Intergenic L1MB8|LINE|L1 -39573 NM_001164213 23143 Hs.507971 NM_015116 ENSG00000136141 LRCH1 CHDC1|NP81 leucine rich repeats and calponin homology domain containing 1 protein-coding 141.667-18 chr12 46839980 46840469 + 0.666667 NA Intergenic Intergenic -14227 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 200.5-46 chr8 127922336 127922636 + 0.666667 NA intron (NR_003367, intron 2 of 8) intron (NR_003367, intron 2 of 8) 26237 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 283-6 chr3 78597833 78598264 + 0.666667 NA 3' UTR (NM_133631, exon 29 of 29) 3' UTR (NM_133631, exon 29 of 29) 421411 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 163.667-73 chr9 104457136 104457566 + 0.666667 NA Intergenic MIR|SINE|MIR -46912 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 172.833-17 chr15 51890748 51891023 + 0.666667 NA intron (NM_014547, intron 5 of 9) L1MC5a|LINE|L1 33235 NR_109775 100422556 Hs.664788 NR_109775 LOC100422556 - LEO1 homolog, Paf1/RNA polymerase II complex component pseudogene pseudo 242-7 chr14 99450687 99451258 + 0.666667 NA intron (NM_199123, intron 6 of 8) intron (NM_199123, intron 6 of 8) 29887 NM_032233 84193 Hs.510407 NM_032233 ENSG00000183576 SETD3 C14orf154|hSETD3 SET domain containing 3, actin histidine methyltransferase protein-coding 168.667-86 chr8 136088239 136088569 + 0.666667 NA Intergenic Intergenic -442394 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 189-28 chr3 88630970 88631455 + 0.666667 NA Intergenic Intergenic 292756 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 251-16 chr3 61544691 61545226 + 0.666667 NA Intergenic AluSx|SINE|Alu -16613 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 241.333-11 chr16 9051485 9052149 + 0.666667 NA Intergenic MER53|DNA|hAT -39827 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 155.333-82 chr5 86921700 86922194 + 0.666667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 175129 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 163-24 chr18 8268843 8269155 + 0.666667 NA intron (NM_002845, intron 17 of 30) L1MA9|LINE|L1 98035 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 261-10 chr18 22739060 22739731 + 0.666667 NA intron (NR_110782, intron 1 of 1) intron (NR_110782, intron 1 of 1) 47442 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 124-28 chr13 37665918 37666133 + 0.666667 NA intron (NM_003306, intron 5 of 10) LTR40A1|LTR|ERVL -67181 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 147-12 chr11 90152136 90152569 + 0.666667 NA exon (NM_005467, exon 6 of 19).2 exon (NM_005467, exon 6 of 19).2 17689 NM_005467 10003 Hs.112482 NM_005467 ENSG00000077616 NAALAD2 GCPIII|GPCIII|NAADALASE2|NAALADASE2 N-acetylated alpha-linked acidic dipeptidase 2 protein-coding 257.167-9 chr20 42412117 42412897 + 0.666667 NA intron (NM_133170, intron 9 of 31) L1ME1|LINE|L1 -272976 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 227.834-11 chr9 85063209 85063956 + 0.666667 NA Intergenic Intergenic 357681 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 184.5-23 chr2 21427570 21428032 + 0.666667 NA Intergenic Intergenic 282851 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 209.5-41 chr8 126307209 126307682 + 0.666667 NA Intergenic L1MEc|LINE|L1 -18050 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 123.667-12 chr10 70748653 70748980 + 0.666667 NA intron (NM_080722, intron 15 of 21) intron (NM_080722, intron 15 of 21) 33757 NR_134533 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 200.667-11 chr10 82485727 82486198 + 0.666667 NA intron (NR_163253, intron 3 of 10) L1MB1|LINE|L1 -253042 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 195-14 chr2 32696309 32696662 + 0.666667 NA intron (NM_017735, intron 9 of 19) AluSx1|SINE|Alu 61230 NR_039922 100616219 NR_039922 ENSG00000265057 MIR4765 - microRNA 4765 ncRNA 256.333-11 chr16 60430616 60431168 + 0.666667 NA Intergenic Intergenic -71099 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 187.167-30 chr5 23053188 23053515 + 0.666667 NA Intergenic L1ME3B|LINE|L1 -200007 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 186-32 chr3 177710409 177710758 + 0.666667 NA intron (NR_047568, intron 3 of 3) intron (NR_047568, intron 3 of 3) -106282 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 128.167-3 chr1 163712615 163712848 + 0.666667 NA Intergenic Intergenic -289540 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 142.667-28 chr14 20464602 20464947 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR -3162 NM_144568 90809 Hs.7001 NM_144568 ENSG00000165782 PIP4P1 C14orf9|TMEM55B phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 protein-coding 166.833-13 chr13 53854680 53855154 + 0.666667 NA intron (NR_047488, intron 4 of 5) L2|LINE|L2 39498 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 116-22 chr14 45303866 45304155 + 0.666667 NA Intergenic L1PA17|LINE|L1 -50808 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 183-44 chr4 123524706 123525162 + 0.666667 NA Intergenic AluSx|SINE|Alu -125057 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 172.667-82 chr9 11738563 11739041 + 0.666667 NA Intergenic MER77|LTR|ERVL -954583 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 142.667-92 chr7 3678518 3678789 + 0.666667 NA intron (NM_152744, intron 4 of 44) L1MB4|LINE|L1 377401 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 248-24 chr8 130504060 130504599 + 0.666667 NA Intergenic MLT2C1|LTR|ERVL -60655 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 141.167-36 chr2 29444849 29445112 + 0.666667 NA intron (NM_004304, intron 4 of 28) MIRb|SINE|MIR 30397 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 216-22 chr3 107800698 107801405 + 0.666667 NA intron (NM_001276286, intron 15 of 16) intron (NM_001276286, intron 15 of 16) 77017 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 136-42 chr20 47033336 47033829 + 0.666667 NA intron (NM_172110, intron 5 of 13) intron (NM_172110, intron 5 of 13) -133385 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 114-70 chr3 137181534 137181775 + 0.666667 NA Intergenic LTR16A2|LTR|ERVL 223671 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 143-64 chr5 45227255 45227655 + 0.666667 NA Intergenic Intergenic 418508 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 196.5-30 chr5 143981837 143982184 + 0.666667 NA Intergenic L2a|LINE|L2 169849 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 177.667-47 chr20 44947255 44947627 + 0.666667 NA intron (NM_006809, intron 5 of 6) MER46C|DNA|TcMar-Tigger 12956 NM_006809 10953 Hs.517066 NM_006809 ENSG00000025772 TOMM34 HTOM34P|TOM34|URCC3 translocase of outer mitochondrial membrane 34 protein-coding 336-3 chr11 55027366 55027936 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr -234504 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 116.333-44 chr17 66407169 66407484 + 0.666667 NA intron (NR_110822, intron 3 of 3) MSTA|LTR|ERVL-MaLR 9528 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 285.333-16 chr7 30668751 30669458 + 0.666667 NA intron (NM_001202481, intron 4 of 13) intron (NM_001202481, intron 4 of 13) 13352 NM_001883 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 194.833-10 chr18 72018156 72018509 + 0.666667 NA Intergenic L2a|LINE|L2 -236106 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 154-36 chr2 36744214 36744541 + 0.666667 NA intron (NM_001177969, intron 4 of 14) L1PA16|LINE|L1 47670 NM_001328661 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 134.333-108 chr9 103450439 103450684 + 0.666667 NA Intergenic Intergenic -125528 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 153.834-2 chr16 65314477 65314982 + 0.666667 NA intron (NR_027755, intron 7 of 8) intron (NR_027755, intron 7 of 8) -138156 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 116.333-98 chr7 32327090 32327345 + 0.666667 NA intron (NM_001322059, intron 1 of 17) L2b|LINE|L2 -27889 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 127.333-35 chr14 66120876 66121166 + 0.666667 NA Intergenic Intergenic -365350 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 122.333-52 chr2 102852014 102852287 + 0.666667 NA Intergenic Intergenic 43572 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 163.833-53 chr7 79255549 79256027 + 0.666667 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -197169 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 169.667-12 chr11 91130584 91130999 + 0.666667 NA Intergenic Intergenic -261589 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 142.667-89 chr6 122184598 122184860 + 0.666667 NA Intergenic Intergenic -214822 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 141.333-70 chr4 147940564 147940823 + 0.666667 NA intron (NM_024605, intron 14 of 22) intron (NM_024605, intron 14 of 22) 158098 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 142.667-11 chr10 89183604 89183891 + 0.666667 NA Intergenic Intergenic 23570 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 149.167-54 chr6 92721237 92721671 + 0.666667 NA Intergenic Intergenic 698105 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 201-45 chr8 117642510 117643312 + 0.666667 NA Intergenic L1ME1|LINE|L1 122198 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 142.167-50 chr20 46991822 46992238 + 0.666667 NA intron (NM_172110, intron 2 of 13) MER102b|DNA|hAT-Charlie 97187 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 123.667-119 chr9 7206800 7207164 + 0.666667 NA Intergenic Intergenic 449632 NM_001354000 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 138-73 chr3 138139160 138139439 + 0.666667 NA Intergenic MLT2B2|LTR|ERVL -6909 NM_016161 51146 Hs.278960 NM_016161 ENSG00000118017 A4GNT alpha4GnT alpha-1,4-N-acetylglucosaminyltransferase protein-coding 175-44 chr4 170149345 170149813 + 0.666667 NA Intergenic L1MA9|LINE|L1 -59192 NM_001286683 51166 Hs.529735 NM_016228 ENSG00000109576 AADAT KAT2|KATII|KYAT2 aminoadipate aminotransferase protein-coding 155.5-23 chr17 52194667 52195045 + 0.666667 NA Intergenic Intergenic -34839 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 194-6 chr10 90069712 90070223 + 0.666667 NA Intergenic L1MA3|LINE|L1 -112594 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 138.667-66 chr4 77591009 77591397 + 0.666667 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 79450 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 145.833-76 chr8 78880930 78881402 + 0.666667 NA Intergenic MIRb|SINE|MIR 43637 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 121.833-21 chr16 64616949 64617199 + 0.666667 NA Intergenic L2a|LINE|L2 504989 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 117.333-56 chr20 49121758 49122097 + 0.666667 NA intron (NM_004602, intron 8 of 13) intron (NM_004602, intron 8 of 13) 66443 NM_017454 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 290.834-2 chr11 87945711 87946522 + 0.666667 NA Intergenic Intergenic -226705 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 119.333-113 chr8 123526405 123526741 + 0.666667 NA intron (NM_148177, intron 1 of 5) intron (NM_148177, intron 1 of 5) 5570 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 137.333-30 chr15 41201910 41202190 + 0.666667 NA intron (NM_152596, intron 5 of 9) intron (NM_152596, intron 5 of 9) 28707 NM_152596 161829 Hs.307999 NM_152596 ENSG00000178997 EXD1 EXDL1 exonuclease 3'-5' domain containing 1 protein-coding 152.667-4 chr1 108686606 108686993 + 0.666667 NA Intergenic Intergenic -5511 NM_001349758 55119 Hs.342307 NM_018061 ENSG00000134186 PRPF38B NET1 pre-mRNA processing factor 38B protein-coding 148.334-2 chr18 61143745 61144244 + 0.666667 NA Intergenic Intergenic -189436 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 161-32 chr2 186053115 186053463 + 0.666667 NA intron (NR_110218, intron 3 of 5) intron (NR_110218, intron 3 of 5) 33028 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 182.5-13 chr14 70083962 70084316 + 0.666667 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -3922 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 143.833-30 chr4 27199928 27200263 + 0.666667 NA Intergenic Intergenic -17384 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 244.167-11 chr2 40445114 40445604 + 0.666667 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) 6325 NM_001351485 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 113.333-54 chr2 148062341 148062590 + 0.666667 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -40861 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 148.833-8 chr11 21415985 21416285 + 0.666667 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) 746549 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 165.833-7 chr10 15549720 15550107 + 0.666667 NA intron (NM_001291494, intron 25 of 28) intron (NM_001291494, intron 25 of 28) 170009 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 155.667-11 chr1 217285848 217286188 + 0.666667 NA Intergenic L1MA5|LINE|L1 -148316 NM_001243511 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 195.167-42 chr8 134194221 134194590 + 0.666667 NA Intergenic Intergenic 307909 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 131.167-44 chr20 41709005 41709425 + 0.666667 NA Intergenic MER77B|LTR|ERVL -90838 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 117.333-25 chr14 24704162 24704434 + 0.666667 NA Intergenic Intergenic -70108 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 129.333-82 chr6 133072710 133073081 + 0.666667 NA Intergenic MIRc|SINE|MIR -15185 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 121.167-80 chr7 37386605 37387082 + 0.666667 NA intron (NM_001206480, intron 1 of 21) intron (NM_001206480, intron 1 of 21) -33175 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 138-56 chr2 104269030 104269339 + 0.666667 NA Intergenic L2b|LINE|L2 139148 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 124.833-93 chrX 97734903 97735127 + 0.666667 NA Intergenic MLT1F|LTR|ERVL-MaLR -170480 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 132.333-51 chr2 21375483 21375741 + 0.666667 NA Intergenic Intergenic 251626 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 123.5-82 chr8 21848768 21848953 + 0.666667 NA Intergenic Intergenic -59985 NM_001165039 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 120.333-110 chr7 25815735 25816025 + 0.666667 NA Intergenic MLT1A|LTR|ERVL-MaLR -25761 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 153.667-78 chr8 113981365 113981633 + 0.666667 NA Intergenic AluSx1|SINE|Alu -544560 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 122.667-96 chr8 109717411 109717766 + 0.666667 NA Intergenic MIRb|SINE|MIR -25797 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 264-4 chr15 79952797 79953437 + 0.666667 NA Intergenic AluSc|SINE|Alu 18079 NM_001114735 597 Hs.227817 NM_004049 ENSG00000140379 BCL2A1 ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1 BCL2 related protein A1 protein-coding 114.167-71 chr4 86843581 86843827 + 0.666667 NA intron (NM_197965, intron 1 of 5) intron (NM_197965, intron 1 of 5) 5680 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 150-77 chr7 34027963 34028222 + 0.666667 NA intron (NM_133468, intron 7 of 15) Charlie1a|DNA|hAT-Charlie 122553 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 187.667-4 chr1 176623016 176623360 + 0.666667 NA intron (NM_021936, intron 3 of 4) intron (NM_021936, intron 3 of 4) 160013 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 145-46 chr2 135880764 135881312 + 0.666667 NA Intergenic L1MC5|LINE|L1 -4595 NM_005915 4175 Hs.444118 NM_005915 ENSG00000076003 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 202-41 chr7 111115973 111116495 + 0.666667 NA intron (NM_001099658, intron 2 of 2) intron (NM_001099658, intron 2 of 2) 25107 NM_018334 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 119.167-90 chr7 91338507 91338868 + 0.666667 NA Intergenic MLT1H2|LTR|ERVL-MaLR 74254 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 158.833-46 chr4 101573783 101574055 + 0.666667 NA Intergenic Intergenic -216688 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 113.667-47 chr16 26858336 26858635 + 0.666667 NA Intergenic Intergenic -208442 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 176.333-51 chr5 178684892 178685313 + 0.666667 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 45557 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 261.667-24 chr20 34728041 34728702 + 0.666667 NA intron (NM_001242539, intron 10 of 11) L1ME4a|LINE|L1 23652 NM_001329431 58476 Hs.516994 NM_021202 ENSG00000078804 TP53INP2 C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1 tumor protein p53 inducible nuclear protein 2 protein-coding 123-29 chr15 95258440 95258814 + 0.666667 NA Intergenic Intergenic 68473 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 211.833-26 chr6 84250864 84251466 + 0.666667 NA Intergenic Intergenic -23522 NM_001286206 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 118.834-6 chr17 34532419 34532963 + 0.666667 NA Intergenic MIR3|SINE|MIR 46678 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 131.167-74 chr7 87949638 87949844 + 0.666667 NA intron (NM_001324421, intron 2 of 28) intron (NM_001324421, intron 2 of 28) 15490 NM_001324420 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 302-16 chr2 139919051 139919713 + 0.666667 NA Intergenic Intergenic 667303 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 138.5-77 chr8 56805448 56805750 + 0.666667 NA Intergenic L1MDa|LINE|L1 188268 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 136.667-59 chr3 41631632 41632027 + 0.666667 NA intron (NR_136342, intron 28 of 34) intron (NR_136342, intron 28 of 34) 330274 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 194.333-34 chr6 20625607 20625988 + 0.666667 NA intron (NM_017774, intron 4 of 15) intron (NM_017774, intron 4 of 15) 91340 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 191.667-37 chr3 152254893 152255430 + 0.666667 NA Intergenic Intergenic -13768 NM_207292 4154 Hs.201858 NM_021038 ENSG00000152601 MBNL1 EXP|MBNL muscleblind like splicing regulator 1 protein-coding 162.167-39 chr5 26577048 26577548 + 0.666667 NA Intergenic Intergenic 461288 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 132.833-35 chr2 120236234 120236494 + 0.666667 NA Intergenic Intergenic -12964 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 142.667-104 chrX 88197827 88198147 + 0.666667 NA Intergenic L1PB3|LINE|L1 -549238 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 209.667-27 chr3 137856409 137856952 + 0.666667 NA Intergenic L1PA7|LINE|L1 84769 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 120.667-85 chr3 193511841 193512186 + 0.666667 NA intron (NM_032279, intron 2 of 29) intron (NM_032279, intron 2 of 29) -41200 NR_121666 101929198 Hs.450092 NR_046726 ATP13A4-AS1 - ATP13A4 antisense RNA 1 ncRNA 164.833-43 chr6 76687162 76687559 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -93737 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 168.333-44 chr5 166867334 166867754 + 0.666667 NA Intergenic Intergenic 58826 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 141-23 chr14 39401846 39402261 + 0.666667 NA intron (NM_203301, intron 2 of 3) intron (NM_203301, intron 2 of 3) 30447 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 202.667-52 chr9 81072980 81073473 + 0.666667 NA Intergenic Intergenic 616309 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 116.667-33 chr14 52606662 52607119 + 0.666667 NA intron (NM_001099652, intron 3 of 6) L1MA4|LINE|L1 54054 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 159.5-48 chr8 14205136 14205454 + 0.666667 NA intron (NM_139167, intron 4 of 7) L4_C_Mam|LINE|RTE-X 575605 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 168.167-10 chr11 64710390 64710790 + 0.666667 NA intron (NM_015080, intron 2 of 22) intron (NM_015080, intron 2 of 22) 12598 NM_015080 9379 Hs.372938 NM_015080 ENSG00000110076 NRXN2 - neurexin 2 protein-coding 196-58 chr8 11858248 11858648 + 0.666667 NA intron (NM_001908, intron 1 of 9).2 AluJb|SINE|Alu 9639 NM_001317237 1508 Hs.520898 NM_001908 ENSG00000164733 CTSB APPS|CPSB|RECEUP cathepsin B protein-coding 155.333-52 chr2 161034617 161035030 + 0.666667 NA Intergenic Intergenic -102132 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 153.333-44 chr21 29080353 29080661 + 0.666667 NA intron (NM_001286622, intron 1 of 8) intron (NM_001286622, intron 1 of 8) 3393 NM_020152 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 130-33 chr14 56527005 56527327 + 0.666667 NA intron (NR_135241, intron 1 of 1) intron (NR_135241, intron 1 of 1) 12835 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 113.833-93 chr9 131264903 131265132 + 0.666667 NA intron (NM_033387, intron 1 of 1) AluSx1|SINE|Alu 11493 NM_033387 286336 Hs.143878 NM_033387 ENSG00000126882 FAM78A C9orf59 family with sequence similarity 78 member A protein-coding 117.667-113 chr6 98260827 98261028 + 0.666667 NA Intergenic Intergenic 236396 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 124-70 chr4 143458534 143458767 + 0.666667 NA intron (NM_207123, intron 7 of 10) intron (NM_207123, intron 7 of 10) -55052 NM_003601 8467 Hs.558422 NM_003601 ENSG00000153147 SMARCA5 ISWI|SNF2H|WCRF135|hISWI|hSNF2H SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein-coding 157-68 chr5 56136498 56136784 + 0.666667 NA intron (NM_024669, intron 7 of 11) AluJb|SINE|Alu 96689 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 123-12 chr11 40073180 40073457 + 0.666667 NA Intergenic MER58A|DNA|hAT-Charlie 219812 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 136.833-43 chr3 192505992 192506337 + 0.666667 NA intron (NM_004113, intron 2 of 5) MER49|LTR|ERV1 -8858 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 175-64 chr9 28453101 28453400 + 0.666667 NA intron (NM_152570, intron 3 of 6) L2b|LINE|L2 266055 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 118.333-108 chr8 3653464 3653770 + 0.666667 NA intron (NM_033225, intron 7 of 69) intron (NM_033225, intron 7 of 69) -925166 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 116.333-20 chr10 120767349 120767679 + 0.666667 NA intron (NR_033850, intron 2 of 2) MIR|SINE|MIR 83665 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 193.833-6 chr10 4498905 4499251 + 0.666667 NA Intergenic Intergenic 92609 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 116.5-87 chr7 94707754 94708106 + 0.666667 NA Intergenic LTR89|LTR|ERVL? 51560 NM_001172438 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 196-36 chr2 155836581 155836976 + 0.666667 NA Intergenic L2|LINE|L2 418153 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 159.333-31 chr19 29966190 29966564 + 0.666667 NA intron (NR_045557, intron 1 of 9) AluSx|SINE|Alu 24138 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 137.333-96 chr7 119364526 119364893 + 0.666667 NA Intergenic Intergenic 542666 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 116.333-16 chr10 63231196 63231510 + 0.666667 NA intron (NM_001322252, intron 2 of 24) intron (NM_001322252, intron 2 of 24) 37870 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 151.167-45 chr5 158747518 158747926 + 0.666667 NA intron (NM_001324107, intron 10 of 15) intron (NM_001324107, intron 10 of 15) -337949 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 154-16 chr12 104052760 104053012 + 0.666667 NA intron (NM_031302, intron 1 of 11) FLAM_A|SINE|Alu 11291 NM_031302 83468 Hs.631650 NM_031302 ENSG00000120820 GLT8D2 - glycosyltransferase 8 domain containing 2 protein-coding 217 chr1 90111059 90111568 + 0.666667 NA Intergenic AluJo|SINE|Alu 116203 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 217.667-32 chr4 62434860 62435453 + 0.666667 NA Intergenic L1PA14|LINE|L1 -273391 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 187.167-25 chr3 84828019 84828306 + 0.666667 NA intron (NR_033860, intron 8 of 20) intron (NR_033860, intron 8 of 20) 41413 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 185.833-3 chr1 56236387 56236885 + 0.666667 NA Intergenic MIRb|SINE|MIR -178327 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 188.5-25 chr2 7844185 7844671 + 0.666667 NA Intergenic Intergenic 55227 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 126.667-115 chr9 108998508 108998854 + 0.666667 NA intron (NM_003798, intron 2 of 18) intron (NM_003798, intron 2 of 18) 14818 NM_003798 8727 Hs.58488 NM_003798 ENSG00000119326 CTNNAL1 ACRP|CLLP|alpha-CATU catenin alpha like 1 protein-coding 197-57 chr9 117580558 117581013 + 0.666667 NA Intergenic (TTC)n|Simple_repeat|Simple_repeat -67821 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 114-47 chr15 77374900 77375140 + 0.666667 NA intron (NM_024776, intron 1 of 7) intron (NM_024776, intron 1 of 7) 45084 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 192.167-20 chr2 37668446 37668816 + 0.666667 NA intron (NM_001270436, intron 1 of 1) intron (NM_001270436, intron 1 of 1) 3568 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 150.333-15 chr10 71102090 71102502 + 0.666667 NA Intergenic L1MEc|LINE|L1 -110274 NM_170744 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 138.667-93 chr7 47875315 47875618 + 0.666667 NA intron (NM_138295, intron 23 of 56) MER5B|DNA|hAT-Charlie 73025 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 115-34 chr18 12026398 12026655 + 0.666667 NA intron (NM_014214, intron 5 of 7) intron (NM_014214, intron 5 of 7) 45019 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol monophosphatase 2 protein-coding 160.333-2 chr1 96516260 96516590 + 0.666667 NA Intergenic Intergenic -142300 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 146.333-45 chr2 30418643 30419092 + 0.666667 NA Intergenic L1MA8|LINE|L1 -28379 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 113.167-30 chr18 8018056 8018519 + 0.666667 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 348747 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 156.5-64 chr4 165063825 165064336 + 0.666667 NA Intergenic AluSq2|SINE|Alu 32081 NM_152620 166655 Hs.368004 NM_152620 ENSG00000176979 TRIM60 RNF129|RNF33 tripartite motif containing 60 protein-coding 189.667-7 chr11 15962047 15962457 + 0.666667 NA Intergenic MIRb|SINE|MIR 7369 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 185.167-29 chr4 36212726 36213138 + 0.666667 NA intron (NR_146894, intron 4 of 32) intron (NR_146894, intron 4 of 32) 31007 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 133.667-62 chr3 71959063 71959315 + 0.666667 NA Intergenic L1PA8|LINE|L1 141266 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 117.167-91 chr8 57719462 57719658 + 0.666667 NA Intergenic Intergenic -26589 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 167.667-7 chr1 168988748 168989187 + 0.666667 NA intron (NR_104091, intron 3 of 4) L1MA9|LINE|L1 98038 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 152.833 chr1 40064944 40065229 + 0.666667 NA intron (NM_001350484, intron 7 of 13) intron (NM_001350484, intron 7 of 13) 24235 NM_001350481 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 136.833-65 chr6 98539804 98540168 + 0.666667 NA Intergenic Intergenic 291714 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 115.667-50 chr2 59925288 59925508 + 0.666667 NA Intergenic Intergenic 457638 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 141.5-13 chr11 95013640 95013897 + 0.666667 NA Intergenic L1MB3|LINE|L1 -11490 NM_001161630 390245 Hs.714692 NM_001161630 ENSG00000235268 KDM4E JMJD2E|KDM4DL|KDM5E lysine demethylase 4E protein-coding 133.333-54 chr2 60345653 60346096 + 0.666667 NA Intergenic L1ME2|LINE|L1 37162 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 211.666-4 chr4 110461199 110461805 + 0.666667 NA Intergenic Intergenic -14653 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 120.333-123 chr9 2383026 2383286 + 0.666667 NA Intergenic Intergenic 224700 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 138.333-78 chr4 19358650 19358933 + 0.666667 NA Intergenic L1MC1|LINE|L1 -893114 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 129-68 chr5 23110494 23110817 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -257311 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 123.667-64 chr20 62729901 62730238 + 0.666667 NA intron (NM_002531, intron 1 of 3) L1MC2|LINE|L1 21233 NM_002531 4923 Hs.590869 NM_002531 ENSG00000101188 NTSR1 NTR neurotensin receptor 1 protein-coding 162.5-38 chr20 7971137 7971434 + 0.666667 NA Intergenic Intergenic -30827 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 158.167-44 chr6 64608204 64608494 + 0.666667 NA intron (NM_001292009, intron 24 of 43) intron (NM_001292009, intron 24 of 43) -693069 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 145-90 chr8 61923740 61924090 + 0.666667 NA Intergenic Intergenic 34076 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 145.667-41 chr16 75828129 75828427 + 0.666667 NA Intergenic L1PB1|LINE|L1 -101788 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 131.167-43 chr2 177067922 177068191 + 0.666667 NA Intergenic Intergenic 144355 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 129-33 chr14 36635917 36636203 + 0.666667 NA Intergenic HAL1ME|LINE|L1 -21508 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 203.333-47 chr8 33256301 33256718 + 0.666667 NA Intergenic MLT1J2|LTR|ERVL-MaLR 216637 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 116.167-7 chr1 156545364 156545704 + 0.666667 NA intron (NM_178229, intron 19 of 37) AluJo|SINE|Alu 27031 NM_178229 128239 Hs.591495 NM_178229 ENSG00000183856 IQGAP3 - IQ motif containing GTPase activating protein 3 protein-coding 232.167-23 chr5 171487763 171488498 + 0.666667 NA Intergenic AluSq2|SINE|Alu 68483 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 114.667-26 chr13 99158431 99158613 + 0.666667 NA Intergenic AluSx1|SINE|Alu 42233 NR_036532 100289373 Hs.225914 NR_036531 ENSG00000228889 UBAC2-AS1 - UBAC2 antisense RNA 1 ncRNA 241.333-31 chr8 121617327 121618220 + 0.666667 NA intron (NM_005328, intron 2 of 3) intron (NM_005328, intron 2 of 3) -21573 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 186.667-15 chr12 58636323 58636789 + 0.666667 NA intron (NR_120452, intron 1 of 7) L1MA7|LINE|L1 44854 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 223-27 chr5 90824706 90825232 + 0.666667 NA intron (NR_003149, intron 76 of 89) AluSz|SINE|Alu 266172 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 200.667-31 chr2 165808770 165809221 + 0.666667 NA Intergenic Intergenic -14748 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 156-41 chr2 43107149 43107518 + 0.666667 NA Intergenic GA-rich|Low_complexity|Low_complexity -4888 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 113.167-62 chr6 41463932 41464310 + 0.666667 NA Intergenic Intergenic -38323 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 181.667-47 chr5 11314857 11315339 + 0.666667 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 273819 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 212.333-41 chr9 24786368 24786807 + 0.666667 NA Intergenic L2a|LINE|L2 -240690 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 212-32 chr6 50690081 50690510 + 0.666667 NA Intergenic Intergenic -23249 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 134.667-59 chr22 24510376 24510784 + 0.666667 NA intron (NM_016327, intron 3 of 9) intron (NM_016327, intron 3 of 9) 15248 NM_016327 51733 Hs.731656 NM_016327 ENSG00000100024 UPB1 BUP1 beta-ureidopropionase 1 protein-coding 161-63 chr6 68885053 68885474 + 0.666667 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 249981 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 155.667 chr1 63888270 63888644 + 0.666667 NA intron (NM_005012, intron 1 of 8) AluJo|SINE|Alu 114440 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 158.333-15 chr11 91935990 91936423 + 0.666667 NA Intergenic Intergenic -288828 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 193.5-25 chr2 58233545 58233931 + 0.666667 NA intron (NM_001114636, intron 1 of 13) intron (NM_001114636, intron 1 of 13) 7642 NR_156742 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 152.667-72 chr5 120328558 120328928 + 0.666667 NA Intergenic Intergenic -135535 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 196.333-8 chr14 75727235 75727583 + 0.666667 NA intron (NM_015072, intron 12 of 31) L1ME1|LINE|L1 66163 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 150.667-87 chr7 89779092 89779507 + 0.666667 NA Intergenic L1MD3|LINE|L1 -340101 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 160.5-31 chr21 37087864 37088205 + 0.666667 NA intron (NM_003316, intron 3 of 45) intron (NM_003316, intron 3 of 45) 5087 NM_003316 7267 Hs.368214 NM_003316 ENSG00000182670 TTC3 DCRR1|RNF105|TPRDIII tetratricopeptide repeat domain 3 protein-coding 174.5-8 chr12 124123297 124123835 + 0.666667 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 150351 NM_001204298 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 189.167-10 chr11 128167722 128168322 + 0.666667 NA Intergenic L2a|LINE|L2 -40744 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 123.5-83 chr8 108847334 108847672 + 0.666667 NA Intergenic Intergenic -59909 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 145.667-97 chr8 80544186 80544526 + 0.666667 NA Intergenic A-rich|Low_complexity|Low_complexity 58130 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 236.333-14 chr2 78213027 78213495 + 0.666667 NA intron (NR_110288, intron 1 of 3) L1MA3|LINE|L1 77470 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 135.167-64 chr3 79150739 79151264 + 0.666667 NA intron (NM_002941, intron 2 of 30) THE1B|LTR|ERVL-MaLR -131542 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 125.167-83 chr8 126027986 126028499 + 0.666667 NA Intergenic L1MB8|LINE|L1 -77045 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 206.167-14 chr22 34865223 34865717 + 0.666667 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 132446 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 169-38 chr4 33425520 33425991 + 0.666667 NA Intergenic Intergenic 614138 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 216.833-11 chr14 39430207 39430604 + 0.666667 NA intron (NM_203301, intron 1 of 3) (AT)n|Simple_repeat|Simple_repeat 2095 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 127.167-12 chr10 30513558 30513780 + 0.666667 NA Intergenic AluJr|SINE|Alu 79023 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 196-68 chrX 82735108 82735515 + 0.666667 NA Intergenic (ATAATAC)n|Simple_repeat|Simple_repeat -772979 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 182.667-31 chr2 109432387 109432804 + 0.666667 NA exon (NM_001099289, exon 6 of 10) exon (NM_001099289, exon 6 of 10) -118970 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 131.167-82 chr8 125702664 125703101 + 0.666667 NA Intergenic Intergenic 248315 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 140-35 chr2 21391266 21391553 + 0.666667 NA Intergenic Intergenic 267423 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 128-26 chr13 85288234 85288557 + 0.666667 NA Intergenic MSTA-int|LTR|ERVL-MaLR -75208 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 116-97 chr8 128483830 128484271 + 0.666667 NA intron (NR_121672, intron 2 of 7) AluSx1|SINE|Alu 80629 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 253.333-11 chr20 45117909 45118744 + 0.666667 NA Intergenic MIRb|SINE|MIR -3152 NM_145652 149708 Hs.375031 NM_145652 ENSG00000175121 WFDC5 PRG5|WAP1|dJ211D12.5 WAP four-disulfide core domain 5 protein-coding 219.5-15 chr17 15349630 15350209 + 0.666667 NA Intergenic Intergenic -8322 NM_031898 64518 Hs.414648 NM_031898 ENSG00000125409 TEKT3 - tektin 3 protein-coding 172.5-8 chr10 52846556 52846937 + 0.666667 NA Intergenic L1PA6|LINE|L1 -75046 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 113.5-19 chr11 58083932 58084263 + 0.666667 NA intron (NM_001005212, intron 2 of 2) L1P4|LINE|L1 35347 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 196.5-28 chr4 105564452 105564908 + 0.666667 NA intron (NR_046840, intron 2 of 2) intron (NR_046840, intron 2 of 2) 3089 NR_046840 100874374 Hs.668908 NR_046840 ENSG00000249885 ARHGEF38-IT1 - ARHGEF38 intronic transcript 1 ncRNA 231.667-18 chr2 41568446 41568918 + 0.666667 NA Intergenic Intergenic -308873 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 198.333-15 chr16 51280443 51280806 + 0.666667 NA intron (NR_039672, intron 6 of 6) MLT1D|LTR|ERVL-MaLR -129352 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 178.667-17 chr15 59551428 59551995 + 0.666667 NA Intergenic Intergenic -60072 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 184.333-19 chr17 59109144 59109568 + 0.666667 NA TTS (NM_001330399) TTS (NM_001330399) -2476 NM_001353083 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 172.667-76 chr8 77665010 77665307 + 0.666667 NA Intergenic MER105|DNA|hAT-Charlie 214461 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 141.5-28 chr14 20770487 20770842 + 0.666667 NA 3' UTR (NM_022360, exon 2 of 2) 3' UTR (NM_022360, exon 2 of 2) 2260 NM_022360 64184 Hs.525202 NM_022360 ENSG00000181552 EDDM3B EP3B|FAM12B|HE3-BETA|HE3B|RAM2 epididymal protein 3B protein-coding 140.167-6 chr10 85754553 85755078 + 0.666667 NA intron (NM_017551, intron 8 of 15) MIRb|SINE|MIR 177084 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 191.5-14 chr12 65514325 65514798 + 0.666667 NA intron (NR_120431, intron 2 of 3) intron (NR_120431, intron 2 of 3) 42750 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 119.333-75 chr4 186683186 186683635 + 0.666667 NA intron (NM_005245, intron 2 of 26) L2b|LINE|L2 40446 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 171.333-41 chr22 23617974 23618434 + 0.666667 NA intron (NM_016449, intron 6 of 11) AluY|SINE|Alu 14117 NM_016449 51233 Hs.517466 NM_016449 ENSG00000189269 DRICH1 C22orf43|KB-208E9.1 aspartate rich 1 protein-coding 219.667-29 chr7 38621875 38622363 + 0.666667 NA intron (NM_001635, intron 1 of 20) intron (NM_001635, intron 1 of 20) 9254 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 152.333-13 chr14 23808779 23809059 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger -144851 NM_001282988 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 224.833-15 chr6 152428776 152429271 + 0.666667 NA intron (NM_182961, intron 36 of 145) intron (NM_182961, intron 36 of 145) 48493 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 116.834-3 chr13 59188217 59188751 + 0.666667 NA Intergenic Intergenic -824234 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 138.333-75 chr3 145342136 145342411 + 0.666667 NA Intergenic MER34-int|LTR|ERV1 726912 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 185-28 chr2 206531616 206531897 + 0.666667 NA intron (NM_003812, intron 4 of 25) intron (NM_003812, intron 4 of 25) 88224 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 180.5-43 chr5 31552058 31552648 + 0.666667 NA intron (NR_134298, intron 8 of 8) intron (NR_134298, intron 8 of 8) 20052 NM_018356 55322 Hs.519246 NM_018356 ENSG00000082213 C5orf22 - chromosome 5 open reading frame 22 protein-coding 118.5-71 chr4 30535551 30535790 + 0.666667 NA Intergenic Intergenic -184699 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 118-116 chr8 26516355 26516620 + 0.666667 NA intron (NM_001197293, intron 1 of 13) intron (NM_001197293, intron 1 of 13) 2456 NM_001197293 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 289.333-6 chr2 117246180 117247019 + 0.666667 NA Intergenic Intergenic -568092 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 134.833-74 chrX 140684457 140684899 + 0.666667 NA Intergenic Intergenic -25081 NR_028345 286411 Hs.317627 NR_028344 ENSG00000203930 LINC00632 ASINC long intergenic non-protein coding RNA 632 ncRNA 162.667-43 chr2 152982238 152982715 + 0.666667 NA Intergenic Arthur1|DNA|hAT-Tip100 263839 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 116.667-46 chr18 2617535 2617931 + 0.666667 NA Intergenic MIR3|SINE|MIR 37662 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox 3 pseudogene 2 pseudo 209.667-10 chr14 62574394 62574836 + 0.666667 NA Intergenic L1MA1|LINE|L1 -434642 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 143.167 chr1 14200432 14200674 + 0.666667 NA Intergenic Intergenic 219420 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 220.5-33 chr7 53769233 53769925 + 0.666667 NA intron (NR_038371, intron 2 of 5) L2a|LINE|L2 42352 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 163.333-14 chr11 6890561 6890915 + 0.666667 NA TTS (NM_003700) TTS (NM_003700) 1762 NM_003700 120776 Hs.690210 NM_003700 ENSG00000166368 OR2D2 OR11-610|OR2D1|hg27 olfactory receptor family 2 subfamily D member 2 protein-coding 125.833-24 chr15 63614194 63614468 + 0.666667 NA intron (NM_003922, intron 76 of 77) MIRb|SINE|MIR -13504 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 266.333-15 chr6 150144917 150145377 + 0.666667 NA intron (NM_030949, intron 1 of 3) intron (NM_030949, intron 1 of 3) 2103 NM_030949 81706 Hs.486798 NM_030949 ENSG00000198729 PPP1R14C CPI17-like|KEPI|NY-BR-81 protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding 203-13 chr15 71317420 71318005 + 0.666667 NA intron (NM_024817, intron 5 of 16) MIRb|SINE|MIR -128653 NR_120348 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 236.667-21 chr2 229132486 229133004 + 0.666667 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 99347 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 131-23 chr16 66614093 66614343 + 0.666667 NA TTS (NM_001363918) TTS (NM_001363918) 9487 NR_037619 123920 Hs.298198 NM_144601 ENSG00000140931 CMTM3 BNAS2|CKLFSF3 CKLF like MARVEL transmembrane domain containing 3 protein-coding 129.167-35 chr17 71296363 71296870 + 0.666667 NA Intergenic MER77|LTR|ERVL -94437 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 125.667-11 chr1 226792183 226792515 + 0.666667 NA Intergenic Charlie4a|DNA|hAT-Charlie -53174 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 135.334-6 chr5 60189905 60190452 + 0.666667 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 182485 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 139-39 chr3 73896568 73896941 + 0.666667 NA Intergenic Intergenic 87510 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 157.167-59 chr7 85607438 85607761 + 0.666667 NA Intergenic L1MEd|LINE|L1 186477 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 222.667-33 chr6 166853474 166853983 + 0.666667 NA intron (NM_001318936, intron 2 of 22) intron (NM_001318936, intron 2 of 22) 8797 NM_001318936 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 311-10 chr9 117575098 117575688 + 0.666667 NA Intergenic Intergenic -73213 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 159.833-5 chr1 71395109 71395458 + 0.666667 NA TTS (NM_173808) TTS (NM_173808) 313959 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 129.667-32 chr14 57287836 57288155 + 0.666667 NA intron (NR_026895, intron 6 of 6) MIR|SINE|MIR 19024 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 171.667-9 chr10 28670210 28670520 + 0.666667 NA Intergenic MIRc|SINE|MIR -7156 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 220.333-21 chr3 173890677 173891085 + 0.666667 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) 29915 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 165.167-29 chr22 25050380 25050850 + 0.666667 NA intron (NM_001145206, intron 4 of 10) MIRb|SINE|MIR 22641 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 268.167-2 chr10 94478647 94479257 + 0.666667 NA intron (NM_015188, intron 3 of 12) AluSc|SINE|Alu -66815 NM_001289067 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 145-59 chr3 134632645 134633008 + 0.666667 NA intron (NM_001350860, intron 1 of 7) L1MD2|LINE|L1 18192 NM_001366276 339855 Hs.146730 NM_178554 ENSG00000174611 KY MFM7 kyphoscoliosis peptidase protein-coding 182.333-39 chr22 24460803 24461201 + 0.666667 NA intron (NR_028483, intron 3 of 7) intron (NR_028483, intron 3 of 7) 28883 NM_001278497 135 Hs.197029 NM_000675 ENSG00000128271 ADORA2A A2aR|ADORA2|RDC8 adenosine A2a receptor protein-coding 114-84 chr6 27739445 27739872 + 0.666667 NA Intergenic AluSg4|SINE|Alu -22086 NR_038929 100131289 Hs.200573 NR_038929 LOC100131289 - uncharacterized LOC100131289 ncRNA 195.667-4 chr1 189252140 189252529 + 0.666667 NA Intergenic Intergenic 1223676 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 183.167-40 chr4 124278504 124279108 + 0.666667 NA Intergenic LTR39|LTR|ERV1 279628 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 230.333-22 chr5 108289290 108289794 + 0.666667 NA intron (NM_001163315, intron 4 of 8) L2c|LINE|L2 92556 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 176.5-9 chr10 69705207 69705507 + 0.666667 NA Intergenic L1ME2|LINE|L1 75110 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 149.667-38 chr2 62069202 62069456 + 0.666667 NA intron (NM_001321781, intron 2 of 2) intron (NM_001321781, intron 2 of 2) -126786 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 182.833-51 chr6 84241045 84241400 + 0.666667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -13579 NM_001286206 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 185-2 chr1 218173524 218173986 + 0.666667 NA Intergenic Intergenic -111538 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 143.167-3 chr1 41086856 41087197 + 0.666667 NA intron (NM_001172222, intron 4 of 10) L1MC4a|LINE|L1 -65271 NM_001168247 200172 Hs.194609 NM_144990 ENSG00000171790 SLFNL1 - schlafen like 1 protein-coding 235.667-26 chr8 117927747 117928255 + 0.666667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -7088 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 162-32 chr18 75775366 75775881 + 0.666667 NA Intergenic Intergenic -63220 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 142.667-7 chr1 166173492 166173790 + 0.666667 NA Intergenic MIRb|SINE|MIR -6886 NR_135199 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 161.667-4 chr1 89854421 89854730 + 0.666667 NA intron (NM_001134479, intron 2 of 2) MIR3|SINE|MIR 32636 NM_018103 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 178-45 chr5 78901084 78901412 + 0.666667 NA intron (NM_198709, intron 5 of 7) MLT1D|LTR|ERVL-MaLR 84062 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 206.833-13 chr20 140321 140750 + 0.666667 NA Intergenic L1PA15-16|LINE|L1 -2055 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 160-43 chr2 125032907 125033187 + 0.666667 NA Intergenic L1PB2|LINE|L1 1007760 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 163.333-83 chr9 18775915 18776347 + 0.666667 NA intron (NM_001040272, intron 18 of 28) intron (NM_001040272, intron 18 of 28) 202825 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 132-2 chr1 42362109 42362455 + 0.666667 NA Intergenic Intergenic -18510 NM_173642 284716 Hs.420244 NM_173642 ENSG00000177181 RIMKLA FAM80A|NAAGS|NAAGS-II ribosomal modification protein rimK like family member A protein-coding 185.667-36 chr4 61408127 61408527 + 0.666667 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 206155 NM_001371342 138.833-77 chr6 138083323 138083611 + 0.666667 NA Intergenic HERV16-int|LTR|ERVL 23952 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 205.667-53 chr7 16757584 16758128 + 0.666667 NA intron (NM_014399, intron 1 of 5) AluSq2|SINE|Alu 4101 NM_014399 27075 Hs.364544 NM_014399 ENSG00000106537 TSPAN13 NET-6|NET6|TM4SF13 tetraspanin 13 protein-coding 159.667-83 chr7 7435723 7436097 + 0.666667 NA intron (NM_001037763, intron 23 of 34) intron (NM_001037763, intron 23 of 34) 99963 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 125-46 chr2 169462176 169462465 + 0.666667 NA Intergenic Intergenic -17174 NM_152384 129880 Hs.233398 NM_152384 ENSG00000163093 BBS5 - Bardet-Biedl syndrome 5 protein-coding 220.667-24 chr3 69848347 69848857 + 0.666667 NA intron (NM_001354608, intron 2 of 10) intron (NM_001354608, intron 2 of 10) -17622 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 198-14 chr11 73614946 73615350 + 0.666667 NA Intergenic AluJo|SINE|Alu -17036 NM_015159 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 263.167 chr1 52302800 52303298 + 0.666667 NA intron (NM_007324, intron 11 of 17) AluSx|SINE|Alu 63156 NM_032449 200014 Hs.591451 NM_032449 ENSG00000154222 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 196.167-29 chr5 155177467 155178010 + 0.666667 NA Intergenic L2b|LINE|L2 163983 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 180.667-47 chr3 8445227 8445753 + 0.666667 NA intron (NR_033378, intron 3 of 3) L3|LINE|CR1 56168 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 215-11 chr11 133824575 133824929 + 0.666667 NA Intergenic Intergenic -14376 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 174.667-7 chr10 76175899 76176232 + 0.666667 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 393304 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 262.5-16 chr3 152086445 152087140 + 0.666667 NA Intergenic L1MEg|LINE|L1 118637 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 169.167-47 chr9 122858221 122858506 + 0.666667 NA intron (NM_001100588, intron 12 of 20) intron (NM_001100588, intron 12 of 20) 21956 NR_003071 692206 Hs.693253 NR_003071 ENSG00000212447 SNORD90 HBII-295 small nucleolar RNA, C/D box 90 snoRNA 183.333-18 chr13 93287615 93287960 + 0.666667 NA intron (NM_005708, intron 1 of 8) intron (NM_005708, intron 1 of 8) 60980 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 196.333-3 chr10 58633328 58633875 + 0.666667 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -81414 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 114.667-67 chr20 54077833 54078122 + 0.666667 NA Intergenic L1MB3|LINE|L1 -7212 NM_003657 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 123-28 chr15 93160655 93160963 + 0.666667 NA Intergenic Intergenic -45257 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 125.167-62 chr5 21124191 21124492 + 0.666667 NA Intergenic Intergenic -335139 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 191.333-30 chr5 90574067 90574372 + 0.666667 NA intron (NR_003149, intron 1 of 89) L1P4|LINE|L1 15422 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 169.667-72 chr8 85145865 85146281 + 0.666667 NA TTS (NM_001349638) TTS (NM_001349638) 30968 NR_134311 102723322 Hs.535913 NR_134311 ENSG00000260493 LOC102723322 - uncharacterized LOC102723322 ncRNA 161.833-13 chr16 30388292 30388572 + 0.666667 NA intron (NM_001214907, intron 1 of 1) AluJo|SINE|Alu -5617 NM_052838 1731 Hs.632176 NM_052838 ENSG00000180096 SEPTIN1 DIFF6|LARP|PNUTL3|SEP1|SEPT1 septin 1 protein-coding 143.667-50 chr17 71830301 71830568 + 0.666667 NA Intergenic Intergenic 195545 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 161.333-74 chr7 94547459 94547923 + 0.666667 NA intron (NM_001363428, intron 13 of 17) intron (NM_001363428, intron 13 of 17) 37882 NM_001363426 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 144.5-21 chr12 115046548 115046917 + 0.666667 NA Intergenic MLT1H2|LTR|ERVL-MaLR -362557 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 200-17 chr14 49751857 49752210 + 0.666667 NA 3' UTR (NM_172193, exon 13 of 13) 3' UTR (NM_172193, exon 13 of 13) -16120 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 117.333-96 chr6 102888484 102888698 + 0.666667 NA Intergenic Intergenic 1489606 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 136.667-22 chr14 36090719 36091127 + 0.666667 NA intron (NR_073454, intron 1 of 2) intron (NR_073454, intron 1 of 2) 20496 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 149.333-68 chr3 185805339 185805615 + 0.666667 NA intron (NR_138486, intron 2 of 15) intron (NR_138486, intron 2 of 15) 15654 NM_001291873 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 146-18 chr14 31761354 31761740 + 0.666667 NA intron (NM_001201574, intron 1 of 5) intron (NM_001201574, intron 1 of 5) 46978 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 119.333-100 chr7 52889742 52890045 + 0.666667 NA Intergenic Intergenic -145740 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 138.5 chr1 49203303 49203747 + 0.666667 NA intron (NM_001323575, intron 4 of 12) L1MB1|LINE|L1 -53886 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 152.333-67 chr8 130150194 130150454 + 0.666667 NA intron (NM_001362925, intron 14 of 29) intron (NM_001362925, intron 14 of 29) -65556 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 124.667-22 chr12 25983779 25983978 + 0.666667 NA intron (NM_001164747, intron 1 of 5) MamRep1894|DNA|hAT 10123 NM_001164747 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 237.5-34 chr8 123132328 123133100 + 0.666667 NA intron (NM_001363154, intron 15 of 18) intron (NM_001363154, intron 15 of 18) -46333 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 207-53 chr8 124592394 124593027 + 0.666667 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 53587 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 114-54 chr2 67393404 67393694 + 0.666667 NA Intergenic Intergenic -3784 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 128-8 chr10 34003510 34003734 + 0.666667 NA Intergenic Intergenic -230942 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 146.667-74 chr6 38272067 38272468 + 0.666667 NA intron (NM_052893, intron 9 of 11) intron (NM_052893, intron 9 of 11) -209329 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 136.667-100 chr8 37173578 37173926 + 0.666667 NA Intergenic L1ME4a|LINE|L1 320161 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 113.333-42 chr15 82135774 82136001 + 0.666667 NA intron (NM_001040610, intron 17 of 17) MLT1J|LTR|ERVL-MaLR 47293 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 134-92 chr5 146280752 146281152 + 0.666667 NA intron (NM_018989, intron 19 of 20) AluSx1|SINE|Alu -57887 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 138.667-18 chr12 1596540 1596943 + 0.666667 NA Intergenic Intergenic -2160 NM_152441 144699 Hs.367956 NM_152441 ENSG00000171823 FBXL14 Fbl14 F-box and leucine rich repeat protein 14 protein-coding 114.5-5 chr1 118559626 118559904 + 0.666667 NA Intergenic MIRb|SINE|MIR -374537 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 151.833-31 chr2 169612854 169613160 + 0.666667 NA intron (NM_004792, intron 7 of 13) Tigger17c|DNA|TcMar-Tigger 28656 NM_004792 9360 Hs.470544 NM_004792 ENSG00000138398 PPIG CARS-Cyp|CYP|SCAF10|SRCyp peptidylprolyl isomerase G protein-coding 166.333-84 chr9 15728086 15728390 + 0.666667 NA intron (NM_001355547, intron 14 of 24) intron (NM_001355547, intron 14 of 24) 164260 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 130-83 chr5 68290092 68290312 + 0.666667 NA promoter-TSS (NM_181504) promoter-TSS (NM_181504) -462 NM_181504 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 122.5-103 chr9 75740745 75741087 + 0.666667 NA Intergenic Intergenic -149728 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 203.833-4 chr11 35051949 35052360 + 0.666667 NA Intergenic MIR|SINE|MIR 85878 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 126.667-86 chr7 3439843 3440084 + 0.666667 NA intron (NM_152744, intron 1 of 44) L1MA10|LINE|L1 138711 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 131-37 chr3 1272018 1272279 + 0.666667 NA intron (NM_001289080, intron 4 of 22) THE1B|LTR|ERVL-MaLR 179124 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 164.333-45 chr3 196828146 196828402 + 0.666667 NA intron (NM_002577, intron 14 of 14) intron (NM_002577, intron 14 of 14) -39582 NM_001308045 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 185.833-20 chr2 208379227 208379642 + 0.666667 NA intron (NM_001309516, intron 1 of 12) intron (NM_001309516, intron 1 of 12) 19742 NM_001309516 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 113.667-85 chr3 101063965 101064343 + 0.666667 NA Intergenic Intergenic -70664 NM_001349331 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 142.333-73 chr3 186169913 186170394 + 0.666667 NA intron (NM_001346, intron 22 of 24) MER5B|DNA|hAT-Charlie -61064 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 120.667-24 chr12 14536282 14536518 + 0.666667 NA intron (NM_024829, intron 5 of 10) intron (NM_024829, intron 5 of 10) -31332 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 152.333-14 chr14 31458963 31459313 + 0.666667 NA Intergenic Intergenic -1632 NM_080664 112487 Hs.116014 NM_080664 ENSG00000129480 DTD2 ATD|C14orf126 D-aminoacyl-tRNA deacylase 2 protein-coding 179.333-2 chr1 188662856 188663369 + 0.666667 NA Intergenic Intergenic 1219484 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 133.833-28 chr15 53908522 53909053 + 0.666667 NA Intergenic Intergenic -69654 NM_001329919 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 164.5-14 chr11 128556922 128557244 + 0.666667 NA intron (NM_001143820, intron 2 of 9) MIRb|SINE|MIR 30475 NM_001143820 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 190.667-50 chr7 19432475 19432977 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR 272710 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 142-47 chr2 121369427 121369671 + 0.666667 NA intron (NM_015282, intron 33 of 38) intron (NM_015282, intron 33 of 38) -84347 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 196.667-35 chr22 27570117 27570500 + 0.666667 NA Intergenic AluYm1|SINE|Alu 231448 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 170.833-31 chr3 196751285 196751662 + 0.666667 NA intron (NM_002577, intron 1 of 14) AluSz6|SINE|Alu 11616 NM_002577 5062 Hs.518530 NM_002577 ENSG00000180370 PAK2 PAK65|PAKgamma p21 (RAC1) activated kinase 2 protein-coding 132.5-57 chr22 27361003 27361224 + 0.666667 NA Intergenic L1MC1|LINE|L1 50462 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 119.667-55 chr2 215170058 215170255 + 0.666667 NA Intergenic Intergenic -31530 NR_103740 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 123.333-8 chr1 174703099 174703383 + 0.666667 NA intron (NM_001366451, intron 2 of 12) L1PB4|LINE|L1 2246 NM_001366452 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 234.667-27 chr5 44870499 44871073 + 0.666667 NA Intergenic Intergenic 61839 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 157.667-76 chr9 95164182 95164507 + 0.666667 NA intron (NM_001243744, intron 6 of 13) L1MB2|LINE|L1 -78250 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 143.333-76 chr6 47999543 47999900 + 0.666667 NA intron (NM_207499, intron 2 of 2) MLT1G3|LTR|ERVL-MaLR 68968 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 251.667-2 chr13 24792614 24793021 + 0.666667 NA intron (NM_031277, intron 9 of 35) intron (NM_031277, intron 9 of 35) 28648 NM_031277 56163 Hs.97464 NM_031277 ENSG00000132972 RNF17 Mmip-2|SPATA23|TDRD4 ring finger protein 17 protein-coding 216.5-29 chr7 4460895 4461430 + 0.666667 NA Intergenic L1M5|LINE|L1 -221133 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 217.333-4 chr10 76244127 76244507 + 0.666667 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 461556 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 148-11 chr1 201961376 201961721 + 0.666667 NA intron (NM_006335, intron 3 of 5) L1MC4|LINE|L1 6045 NM_006335 10440 Hs.20716 NM_006335 ENSG00000134375 TIMM17A TIM17|TIM17A translocase of inner mitochondrial membrane 17A protein-coding 179-42 chr5 9650727 9651155 + 0.666667 NA intron (NR_027112, intron 11 of 12) intron (NR_027112, intron 11 of 12) -20590 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 161.833 chr1 45820354 45820743 + 0.666667 NA intron (NM_001324320, intron 1 of 29) L1M4|LINE|L1 16935 NM_001319245 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 114.833-20 chr15 36242555 36242941 + 0.666667 NA Intergenic L1PA10|LINE|L1 315892 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 118.333-89 chr4 182022123 182022434 + 0.666667 NA Intergenic L1PA17|LINE|L1 122237 NR_027107 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 272.667-4 chr17 59448093 59448614 + 0.666667 NA intron (NR_110813, intron 2 of 2) intron (NR_110813, intron 2 of 2) 78504 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 120-89 chr5 36455907 36456121 + 0.666667 NA Intergenic L1ME3F|LINE|L1 -150341 NM_001289939 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 119.333-59 chr20 52081820 52082140 + 0.666667 NA Intergenic MER58A|DNA|hAT-Charlie 23504 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 127-83 chr5 132960442 132960650 + 0.666667 NA intron (NM_014423, intron 1 of 20) intron (NM_014423, intron 1 of 20) 3088 NM_014423 27125 Hs.519313 NM_014423 ENSG00000072364 AFF4 AF5Q31|CHOPS|MCEF AF4/FMR2 family member 4 protein-coding 269.5-22 chrX 148912515 148913101 + 0.666667 NA intron (NM_001170628, intron 6 of 17) intron (NM_001170628, intron 6 of 17) 193717 NM_001170628 2334 Hs.496911 NM_002025 ENSG00000155966 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family member 2 protein-coding 207.167-18 chr20 14186650 14187030 + 0.666667 NA intron (NM_001351663, intron 3 of 17) L1PA16|LINE|L1 150772 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 165.833-8 chr10 25415307 25415677 + 0.666667 NA intron (NM_020752, intron 4 of 10) L1MB7|LINE|L1 -236220 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 139-29 chr2 99571232 99571561 + 0.666667 NA intron (NM_001025108, intron 17 of 23) intron (NM_001025108, intron 17 of 23) -81379 NM_001321454 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 169.667-68 chr7 67500540 67500970 + 0.666667 NA Intergenic Intergenic 164779 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 196.167-31 chr6 134099663 134100021 + 0.666667 NA Intergenic Intergenic 17838 NR_037938 387065 Hs.571061 NR_037938 HMGA1P7 HMGA1L7 high mobility group AT-hook 1 pseudogene 7 pseudo 146.333-11 chr10 85160030 85160385 + 0.666667 NA Intergenic Intergenic 38698 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 178-47 chr5 131425346 131425875 + 0.666667 NA 3' UTR (NM_001164386, exon 29 of 29) 3' UTR (NM_001164386, exon 29 of 29) 161601 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 145-36 chr17 77979916 77980295 + 0.666667 NA Intergenic L1ME4c|LINE|L1 -24132 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 212.667-17 chr12 124203346 124203834 + 0.666667 NA intron (NM_001347902, intron 3 of 4) intron (NM_001347902, intron 3 of 4) -85574 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 120.333-15 chr1 213180883 213181376 + 0.666667 NA intron (NR_146209, intron 8 of 11) intron (NR_146209, intron 8 of 11) 129888 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 171.333-19 chr11 124716308 124716668 + 0.666667 NA Intergenic Intergenic -23454 NM_006176 4900 Hs.524116 NM_006176 ENSG00000154146 NRGN RC3|hng neurogranin protein-coding 211.833-13 chr2 239544478 239545096 + 0.666667 NA Intergenic Intergenic 143039 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 122.333-14 chr10 81541309 81541637 + 0.666667 NA Intergenic L1PB1|LINE|L1 -333721 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 163.833-29 chr2 74754954 74755266 + 0.666667 NA Intergenic L1MEg|LINE|L1 -77545 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 177.5-60 chr5 29549112 29549554 + 0.666667 NA Intergenic THE1D-int|LTR|ERVL-MaLR -153357 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 127.167-56 chr3 97583823 97584125 + 0.666667 NA intron (NM_001080448, intron 11 of 17) intron (NM_001080448, intron 11 of 17) 144367 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 128.333-67 chr2 165371076 165371381 + 0.666667 NA intron (NM_001040143, intron 21 of 27) intron (NM_001040143, intron 21 of 27) 77173 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 190.667-18 chr17 54240190 54240648 + 0.666667 NA Intergenic Intergenic 417492 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 114-41 chr14 58774365 58774626 + 0.666667 NA Intergenic L2c|LINE|L2 -53793 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 192-26 chr20 63142701 63143135 + 0.666667 NA Intergenic HSMAR2|DNA|TcMar-Mariner -35582 NR_029670 406909 NR_029670 ENSG00000207598 MIR124-3 MIRN124-3|MIRN124A3|mir-124-3 microRNA 124-3 ncRNA 395 chr1 105593468 105594621 + 0.666667 NA intron (NR_125955, intron 3 of 3) intron (NR_125955, intron 3 of 3) 24891 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 167.5-40 chr21 28805131 28805519 + 0.666667 NA Intergenic Intergenic 80042 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 153.833-4 chr1 157024460 157024839 + 0.666667 NA intron (NM_014784, intron 1 of 39) intron (NM_014784, intron 1 of 39) 21093 NM_014784 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding 123-7 chr10 81078017 81078302 + 0.666667 NA Intergenic L1PA15|LINE|L1 428362 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 169.5-52 chr4 126918914 126919216 + 0.666667 NA Intergenic Intergenic -713892 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 125.667-122 chr8 129307902 129308143 + 0.666667 NA Intergenic L1ME2|LINE|L1 -66782 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 121-80 chr7 29426368 29426730 + 0.666667 NA intron (NM_001293072, intron 6 of 12) intron (NM_001293072, intron 6 of 12) -53163 NM_001293079 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 152.333-35 chr2 217160325 217160694 + 0.666667 NA Intergenic Intergenic -122224 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 170-60 chr6 37421761 37422199 + 0.666667 NA Intergenic L1M4c|LINE|L1 -11241 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 168.333-48 chr7 49439579 49439947 + 0.666667 NA Intergenic L1M5|LINE|L1 -333875 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 120.833-49 chr3 119640080 119640292 + 0.666667 NA Intergenic L1ME3A|LINE|L1 20404 NM_001369919 64091 Hs.534383 NM_022135 ENSG00000121577 POPDC2 POP2 popeye domain containing 2 protein-coding 153.333-14 chr12 58218976 58219403 + 0.666667 NA Intergenic Intergenic 131297 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 121.333-11 chr10 74551492 74551955 + 0.666667 NA intron (NM_001369123, intron 7 of 9) intron (NM_001369123, intron 7 of 9) -22399 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 171-47 chr5 112778597 112778945 + 0.666667 NA intron (NM_001354895, intron 5 of 15) AluSc8|SINE|Alu 40886 NM_001354905 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 168.333-39 chr3 142581617 142581913 + 0.666667 NA Intergenic Intergenic -3032 NM_001184 545 Hs.271791 NM_001184 ENSG00000175054 ATR FCTCS|FRP1|MEC1|SCKL|SCKL1 ATR serine/threonine kinase protein-coding 133.333-20 chr11 24498037 24498332 + 0.666667 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 1131 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 143-31 chr17 60582852 60583166 + 0.666667 NA intron (NR_126009, intron 3 of 3) FLAM_C|SINE|Alu -17174 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 143.333-87 chr8 111570925 111571293 + 0.666667 NA Intergenic Intergenic 194470 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 141-94 chr9 86690936 86691315 + 0.666667 NA Intergenic Intergenic 256381 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 231-31 chr8 120158585 120159141 + 0.666667 NA intron (NM_021110, intron 3 of 47) intron (NM_021110, intron 3 of 47) 33761 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 182-43 chr5 115375537 115376042 + 0.666667 NA Intergenic AluSx|SINE|Alu -79135 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 187.667-33 chr21 20660911 20661321 + 0.666667 NA Intergenic Intergenic 141992 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 154.833 chr1 11509073 11509392 + 0.666667 NA intron (NM_020780, intron 3 of 20) L1MEc|LINE|L1 30077 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 130.667-76 chr5 88063942 88064290 + 0.666667 NA Intergenic L1MA4A|LINE|L1 204729 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 134.333-52 chr2 12663746 12664041 + 0.666667 NA Intergenic MIR3|SINE|MIR -52979 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 137.333-93 chr7 81466451 81466751 + 0.666667 NA Intergenic L1MC3|LINE|L1 95218 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 215.5-27 chr3 97983136 97983774 + 0.666667 NA Intergenic L2a|LINE|L2 -11004 NM_001042533 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 127.167-2 chr1 23578580 23578808 + 0.666667 NA Intergenic L2a|LINE|L2 -19193 NM_002167 3399 Hs.76884 NM_002167 ENSG00000117318 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, HLH protein protein-coding 223.333-37 chr7 26418013 26418602 + 0.666667 NA intron (NR_148500, intron 2 of 5) intron (NR_148500, intron 2 of 5) -18889 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 174.333-36 chr3 72933049 72933492 + 0.666667 NA intron (NM_001080393, intron 3 of 6) intron (NM_001080393, intron 3 of 6) 45224 NR_138564 727936 Hs.710275 NM_001080393 ENSG00000172986 GXYLT2 GLT8D4 glucoside xylosyltransferase 2 protein-coding 134.167-7 chr1 221182325 221182688 + 0.666667 NA Intergenic MLT2F|LTR|ERVL 153790 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 142.167-88 chr9 86862774 86863085 + 0.666667 NA Intergenic MER2|DNA|TcMar-Tigger 84577 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 133-25 chr13 70905665 70905871 + 0.666667 NA Intergenic Intergenic -109373 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 134.167-45 chr2 103578102 103578443 + 0.666667 NA Intergenic L1MB7|LINE|L1 -593843 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 237.833-2 chr12 44223801 44224439 + 0.666667 NA intron (NM_001286213, intron 4 of 6) intron (NM_001286213, intron 4 of 6) 388039 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 188.667-13 chr12 39394877 39395529 + 0.666667 NA intron (NM_001173464, intron 1 of 37) L2c|LINE|L2 47917 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 178.667-61 chr6 142059733 142060047 + 0.666667 NA Intergenic AluJb|SINE|Alu 28909 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 120.334-2 chr18 36634419 36634948 + 0.666667 NA intron (NM_001281739, intron 10 of 23) intron (NM_001281739, intron 10 of 23) 28735 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 186.833-3 chr1 178844579 178845017 + 0.666667 NA intron (NM_152663, intron 8 of 19) intron (NM_152663, intron 8 of 19) 26279 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 150.333-9 chr10 24164729 24165024 + 0.666667 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -43915 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 143.5-21 chr14 38542727 38542942 + 0.666667 NA Intergenic AluY|SINE|Alu -286741 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 158.167-33 chr22 44122739 44123020 + 0.666667 NA intron (NM_001243386, intron 4 of 11) L1MC5a|LINE|L1 -50077 NM_001137605 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 155.167-25 chr2 170091126 170091428 + 0.666667 NA Intergenic L1MEg|LINE|L1 -86870 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 151.333-44 chr2 63863301 63863622 + 0.666667 NA intron (NM_001001521, intron 3 of 9) intron (NM_001001521, intron 3 of 9) 21581 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 153.5-10 chr10 71934939 71935327 + 0.666667 NA Intergenic L1PB1|LINE|L1 -29262 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 132.667-20 chr11 110740353 110740728 + 0.666667 NA Intergenic Intergenic -27351 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 225-22 chr21 28436469 28436997 + 0.666667 NA Intergenic Intergenic -102585 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 143.167-61 chr4 164759293 164759714 + 0.666667 NA intron (NM_001352885, intron 1 of 2) intron (NM_001352885, intron 1 of 2) 5372 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 231.333-27 chr5 55949483 55950006 + 0.666667 NA intron (NR_157112, intron 14 of 17) intron (NR_157112, intron 14 of 17) 45219 NR_157112 3572 Hs.532082 NM_002184 ENSG00000134352 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 163.667-40 chr2 115551058 115551616 + 0.666667 NA intron (NM_001321912, intron 6 of 25) (GGCTAT)n|Simple_repeat|Simple_repeat 207522 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 201-23 chr2 200617319 200617696 + 0.666667 NA intron (NM_001159, intron 16 of 34) intron (NM_001159, intron 16 of 34) 31493 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 224.833-6 chr17 73017352 73017873 + 0.666667 NA intron (NM_001352692, intron 4 of 9) AluSx|SINE|Alu 75076 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 147.333-56 chr3 83065503 83065757 + 0.666667 NA Intergenic Intergenic 1079488 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 149.333-16 chr11 85581343 85581671 + 0.666667 NA intron (NM_001142699, intron 3 of 27) AluSx|SINE|Alu 45763 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 114.833-46 chr3 130827148 130827462 + 0.666667 NA Intergenic AluSz6|SINE|Alu -23290 NM_001199181 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 130.333-33 chr14 48166359 48166770 + 0.666667 NA Intergenic L1PB2|LINE|L1 -371550 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 122.667-13 chr11 27610970 27611249 + 0.666667 NA intron (NR_033314, intron 3 of 6) intron (NR_033314, intron 3 of 6) 23518 NR_102708 101410541 Hs.471439 NR_102708 ENSG00000254934 LINC00678 - long intergenic non-protein coding RNA 678 ncRNA 176.5-40 chr22 28224719 28225015 + 0.666667 NA intron (NM_001145418, intron 5 of 22) MLT1O|LTR|ERVL-MaLR -235002 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 285.333 chr1 110995724 110996311 + 0.666667 NA Intergenic L1MA2|LINE|L1 -32073 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 256-14 chr5 148071094 148071767 + 0.666667 NA intron (NM_006846, intron 3 of 32) intron (NM_006846, intron 3 of 32) 7450 NM_001127698 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 149.667-7 chr1 236378529 236378864 + 0.666667 NA Intergenic Intergenic -15590 NM_145861 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 118.833-43 chr2 169964910 169965145 + 0.666667 NA intron (NM_172070, intron 24 of 38) intron (NM_172070, intron 24 of 38) 137519 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 208.667-5 chr1 222387565 222387914 + 0.666667 NA Intergenic Intergenic 160365 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 126-69 chr4 135559214 135559519 + 0.666667 NA Intergenic Intergenic 328727 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 158.833-10 chr11 65391416 65391841 + 0.666667 NA intron (NM_001300833, intron 3 of 9) AluSz|SINE|Alu 4991 NM_001300832 83786 Hs.578433 NM_031904 ENSG00000126391 FRMD8 FKSG44|iTAP FERM domain containing 8 protein-coding 139.5-21 chr19 35171136 35171394 + 0.666667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 16530 NM_144779 53827 Hs.333418 NM_014164 ENSG00000089327 FXYD5 DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC FXYD domain containing ion transport regulator 5 protein-coding 137.667-82 chr5 138160335 138160542 + 0.666667 NA intron (NM_001300961, intron 18 of 20) intron (NM_001300961, intron 18 of 20) 18192 NM_001300962 10902 Hs.519337 NM_006696 ENSG00000112983 BRD8 SMAP|SMAP2|p120 bromodomain containing 8 protein-coding 181.333-28 chr2 55701156 55701673 + 0.666667 NA Intergenic G-rich|Low_complexity|Low_complexity -7570 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 154.333-9 chr10 59720591 59720994 + 0.666667 NA Intergenic L1MB7|LINE|L1 -10713 NM_001323977 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 296.667-8 chr2 78971912 78972686 + 0.666667 NA Intergenic L1ME1|LINE|L1 -53403 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 122.667-30 chr15 67423733 67424008 + 0.666667 NA intron (NM_001322471, intron 11 of 13) AluSx1|SINE|Alu 97103 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 137.667-79 chr5 19246025 19246544 + 0.666667 NA Intergenic L1PA8A|LINE|L1 639988 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 148.167-51 chr3 122848858 122849169 + 0.666667 NA intron (NM_032839, intron 5 of 8) L1MA4|LINE|L1 -37500 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 115.667-28 chr13 37872361 37872705 + 0.666667 NA Intergenic Intergenic -2108 NM_001135957 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 240-8 chr12 49976067 49976694 + 0.666667 NA 3' UTR (NM_001652, exon 4 of 4) 3' UTR (NM_001652, exon 4 of 4) 3433 NM_001652 363 Hs.54505 NM_001652 ENSG00000086159 AQP6 AQP2L|KID aquaporin 6 protein-coding 115-46 chr20 60117220 60117568 + 0.666667 NA Intergenic Intergenic -21098 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 171.667-69 chr5 152327782 152328102 + 0.666667 NA Intergenic L1ME3A|LINE|L1 77337 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 132-38 chr17 79226105 79226365 + 0.666667 NA intron (NM_001350453, intron 3 of 13) L2a|LINE|L2 151298 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 185.833-21 chr22 25208461 25208801 + 0.666667 NA Intergenic L2a|LINE|L2 8773 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 136-14 chr11 18413981 18414349 + 0.666667 NA intron (NM_017448, intron 2 of 7) intron (NM_017448, intron 2 of 7) 1847 NM_017448 3948 Hs.654377 NM_002301 ENSG00000166796 LDHC CT32|LDH3|LDHX lactate dehydrogenase C protein-coding 173.833-52 chr6 50485973 50486338 + 0.666667 NA Intergenic L1MD1|LINE|L1 -227389 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 222.167-20 chr19 29377053 29377553 + 0.666667 NA intron (NR_040029, intron 9 of 9) MER58A|DNA|hAT-Charlie 148449 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 184.333-72 chrX 57246958 57247354 + 0.666667 NA Intergenic Intergenic -39521 NM_001353840 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 125.333-67 chr2 197259298 197259659 + 0.666667 NA intron (NR_046837, intron 5 of 5) intron (NR_046837, intron 5 of 5) 43041 NR_046837 101927547 Hs.687027 NR_046837 ENSG00000236977 ANKRD44-IT1 - ANKRD44 intronic transcript 1 ncRNA 158.5-70 chr6 48890076 48890545 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR 572943 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 131-12 chr11 116018496 116018772 + 0.666667 NA Intergenic MSTA|LTR|ERVL-MaLR -258434 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 123.333-108 chr8 101938690 101939018 + 0.666667 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -45578 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 139.333-48 chr18 34380361 34380610 + 0.666667 NA Intergenic Intergenic -112805 NM_032975 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 256.667-4 chr1 231275175 231275606 + 0.666667 NA intron (NM_001316350, intron 12 of 14) intron (NM_001316350, intron 12 of 14) 34178 NM_014236 8443 Hs.498028 NM_014236 ENSG00000116906 GNPAT DAP-AT|DAPAT|DHAPAT|RCDP2 glyceronephosphate O-acyltransferase protein-coding 201.333-10 chr11 6916330 6916745 + 0.666667 NA Intergenic L1MEc|LINE|L1 -4465 NM_001004684 120775 Hs.446766 NM_001004684 ENSG00000178358 OR2D3 OR11-89 olfactory receptor family 2 subfamily D member 3 protein-coding 123.167-27 chr14 71475186 71475438 + 0.666667 NA intron (NM_001284247, intron 1 of 23) intron (NM_001284247, intron 1 of 23) -12549 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 117.667-78 chr3 110522675 110523018 + 0.666667 NA Intergenic Intergenic 547113 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 240.5-23 chr7 112636223 112636622 + 0.666667 NA intron (NR_110158, intron 4 of 7) intron (NR_110158, intron 4 of 7) 14041 NR_110158 101928012 Hs.521131 NR_110158 ENSG00000223646 LOC101928012 - uncharacterized LOC101928012 ncRNA 197.333-56 chr7 54830967 54831403 + 0.666667 NA Intergenic L2a|LINE|L2 71872 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 130-54 chr2 119862496 119862768 + 0.666667 NA exon (NM_002830, exon 3 of 27) exon (NM_002830, exon 3 of 27) 102710 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 142.333-39 chr17 28287693 28287953 + 0.666667 NA intron (NR_028334, intron 2 of 2) AluJr|SINE|Alu 19559 NR_028334 284085 Hs.371796 NM_173624 ENSG00000265480 KRT18P55 - keratin 18 pseudogene 55 pseudo 129.333-57 chr21 18327383 18327706 + 0.666667 NA intron (NM_002772, intron 15 of 24) intron (NM_002772, intron 15 of 24) 76241 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 117.5-20 chr17 59635214 59635736 + 0.666667 NA intron (NM_001288653, intron 1 of 31) intron (NM_001288653, intron 1 of 31) 15580 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 126-29 chr14 45902887 45903105 + 0.666667 NA Intergenic Intergenic -161163 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 205.5-43 chr8 83388902 83389270 + 0.666667 NA Intergenic FRAM|SINE|Alu -14672 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 132.5-41 chr18 9477746 9478158 + 0.666667 NA intron (NM_006788, intron 1 of 9) intron (NM_006788, intron 1 of 9) 2439 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 122.5-90 chr7 54665699 54665917 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR 93403 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 163.667-44 chr21 30326598 30326882 + 0.666667 NA Intergenic HERVL40-int|LTR|ERVL -6425 NM_203405 388818 Hs.28704 NM_203405 ENSG00000197683 KRTAP26-1 - keratin associated protein 26-1 protein-coding 151-22 chr14 70154283 70154669 + 0.666667 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -32632 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 196-41 chr22 41375416 41375801 + 0.666667 NA intron (NM_001145398, intron 1 of 3) AluY|SINE|Alu -6334 NM_003216 7008 Hs.181159 NM_003216 ENSG00000167074 TEF - TEF transcription factor, PAR bZIP family member protein-coding 146.333-81 chr5 74102441 74102811 + 0.666667 NA Intergenic Intergenic 205699 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 123.167-83 chr5 160213104 160213332 + 0.666667 NA intron (NM_001040442, intron 1 of 5) intron (NM_001040442, intron 1 of 5) 14177 NM_001040442 2172 Hs.519719 NM_001445 ENSG00000170231 FABP6 I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP fatty acid binding protein 6 protein-coding 196.667-53 chr8 51061251 51061897 + 0.666667 NA Intergenic L1MD2|LINE|L1 747871 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 175.333-38 chr3 62839214 62839698 + 0.666667 NA intron (NM_003716, intron 1 of 29) intron (NM_003716, intron 1 of 29) 35960 NM_183394 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 190-59 chr8 90297588 90298104 + 0.666667 NA intron (NR_051989, intron 2 of 3) L2c|LINE|L2 76358 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 176.667-28 chr17 72983855 72984448 + 0.666667 NA intron (NM_001352692, intron 4 of 9) intron (NM_001352692, intron 4 of 9) 108537 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 279-9 chr2 88379519 88380248 + 0.666667 NA Intergenic L1ME2|LINE|L1 72810 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 174.333-3 chr1 225295389 225295758 + 0.666667 NA intron (NM_001367479, intron 55 of 85) L1MA5A|LINE|L1 132465 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 126.5-57 chr3 40923109 40923375 + 0.666667 NA Intergenic Intergenic -276263 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 140.333-38 chr2 144842382 144842713 + 0.666667 NA intron (NR_033870, intron 2 of 4) intron (NR_033870, intron 2 of 4) 174580 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 188.333-33 chr2 234365625 234365985 + 0.666667 NA Intergenic MER2|DNA|TcMar-Tigger 88790 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 153.333-8 chr10 54011046 54011350 + 0.666667 NA intron (NM_001354411, intron 21 of 34) L1PA16|LINE|L1 -475032 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 186.333-48 chr5 143251429 143251802 + 0.666667 NA Intergenic Intergenic 59115 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 203.667-21 chr20 44761477 44761880 + 0.666667 NA intron (NM_182970, intron 2 of 5) LTR16C|LTR|ERVL -15451 NR_132377 106144538 Hs.255479 NR_132377 KCNK15-AS1 - KCNK15 and WISP2 antisense RNA 1 ncRNA 158.667-43 chr2 40151248 40151647 + 0.666667 NA intron (NM_001351483, intron 7 of 8) L2a|LINE|L2 233813 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 201.5-13 chr18 71901736 71902282 + 0.666667 NA Intergenic Intergenic -119783 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 213.167-19 chr3 98877328 98877676 + 0.666667 NA intron (NM_080927, intron 2 of 15) L1MC4a|LINE|L1 24193 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 173.167-3 chr10 28601164 28601678 + 0.666667 NA intron (NM_100264, intron 7 of 13) L1MB4|LINE|L1 68303 NM_100486 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 184.333-48 chr5 95034676 95035094 + 0.666667 NA intron (NM_024717, intron 1 of 22) L1PA17|LINE|L1 46981 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 120.833-16 chr15 56032950 56033474 + 0.666667 NA Intergenic AluJb|SINE|Alu -39600 NM_006154 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 171.167-62 chr9 23236489 23236964 + 0.666667 NA Intergenic Intergenic 435673 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 162-12 chr10 116773140 116773554 + 0.666667 NA intron (NM_001330164, intron 2 of 12) intron (NM_001330164, intron 2 of 12) -30781 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 197.167-10 chr12 13864106 13864507 + 0.666667 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 116050 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 164.833-48 chr8 57369132 57369628 + 0.666667 NA Intergenic MER50-int|LTR|ERV1 25593 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 153.167-53 chr7 16819332 16819596 + 0.666667 NA Intergenic L1MB8|LINE|L1 -14465 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 190.833-2 chr1 196161400 196161881 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -72925 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 233.833-20 chr9 28413469 28414130 + 0.666667 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 305506 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 164.167-25 chr17 62062999 62063266 + 0.666667 NA exon (NM_005121, exon 2 of 30) exon (NM_005121, exon 2 of 30) 2146 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 133.333-77 chr3 97761264 97761544 + 0.666667 NA 3' UTR (NM_001080448, exon 18 of 18) 3' UTR (NM_001080448, exon 18 of 18) -3117 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 259.5-4 chr14 55428758 55429188 + 0.666667 NA exon (NM_199047, exon 5 of 7) exon (NM_199047, exon 5 of 7) 11572 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 139-12 chr14 20977020 20977243 + 0.666667 NA Intergenic FLAM_C|SINE|Alu -12849 NM_022734 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 183.667-21 chr12 125871335 125871715 + 0.666667 NA Intergenic Intergenic 111849 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 137.667-9 chr10 32400413 32400794 + 0.666667 NA Intergenic Intergenic -21834 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 147-33 chr2 43442507 43442839 + 0.666667 NA intron (NM_001083953, intron 26 of 37) intron (NM_001083953, intron 26 of 37) 153301 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 119.667-16 chr12 14846219 14846517 + 0.666667 NA Intergenic Intergenic -2842 NM_021071 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DO/ART4|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 176.5-30 chr2 76539386 76539710 + 0.666667 NA Intergenic L1MDa|LINE|L1 -446417 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 126.333-95 chr6 123930723 123930983 + 0.666667 NA intron (NM_001040214, intron 1 of 6) L2c|LINE|L2 126988 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 181.833-11 chr12 63433910 63434386 + 0.666667 NA Intergenic AluJr|SINE|Alu 234345 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 119-88 chr7 3778710 3778997 + 0.666667 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -350832 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 244.333-15 chr21 39073042 39073495 + 0.666667 NA Intergenic Intergenic -95494 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LINC01700 - long intergenic non-protein coding RNA 1700 ncRNA 124.333-35 chr16 79387499 79387815 + 0.666667 NA Intergenic Intergenic 213080 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 140-30 chr16 10922415 10922659 + 0.666667 NA intron (NR_104444, intron 16 of 17) intron (NR_104444, intron 16 of 17) 19931 NM_014015 28955 Hs.592051 NM_014015 ENSG00000182108 DEXI MYLE Dexi homolog protein-coding 126.833-52 chr5 89346831 89347168 + 0.666667 NA intron (NR_136219, intron 7 of 9) L1MEb|LINE|L1 -442894 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 182.333-20 chr15 57382770 57383220 + 0.666667 NA intron (NM_032866, intron 1 of 18) intron (NM_032866, intron 1 of 18) 6490 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 167.667-13 chr11 7319706 7320163 + 0.666667 NA intron (NM_175733, intron 3 of 6) intron (NM_175733, intron 3 of 6) 68030 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 147-8 chr1 243996523 243996758 + 0.666667 NA intron (NR_033883, intron 2 of 11) intron (NR_033883, intron 2 of 11) -52299 NM_001278196 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 186-8 chr10 87579536 87579918 + 0.666667 NA Intergenic Intergenic 71894 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 116-46 chr2 36463980 36464246 + 0.666667 NA intron (NM_016441, intron 4 of 16) Tigger15a|DNA|TcMar-Tigger 108335 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 156-61 chr4 107985760 107986110 + 0.666667 NA Intergenic LTR49-int|LTR|ERV1 -3779 NM_001184705 3033 Hs.438289 NM_005327 ENSG00000138796 HADH HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD hydroxyacyl-CoA dehydrogenase protein-coding 115.667 chr1 25949280 25949530 + 0.666667 NA Intergenic AluSx3|SINE|Alu -42528 NM_203399 3925 Hs.209983 NM_005563 ENSG00000117632 STMN1 C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN stathmin 1 protein-coding 279-11 chr2 184627936 184628722 + 0.666667 NA intron (NM_194250, intron 1 of 3) AluSp|SINE|Alu 29800 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 146.167-60 chr5 165502899 165503199 + 0.666667 NA Intergenic MIR3|SINE|MIR 1032770 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 191-32 chr2 68168318 68168713 + 0.666667 NA intron (NM_001329916, intron 5 of 5) MER49|LTR|ERV1 10627 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 151-14 chr12 83347434 83347716 + 0.666667 NA Intergenic MER89|LTR|ERV1 660420 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 133.333-127 chr9 86529855 86530127 + 0.666667 NA Intergenic Intergenic -175581 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 179.833-16 chr17 71091438 71091984 + 0.666667 NA Intergenic Intergenic 110468 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 184-20 chr16 50131832 50132290 + 0.666667 NA Intergenic ERVL-B4-int|LTR|ERVL -20850 NM_001365323 64282 Hs.514342 NM_022447 ENSG00000121274 TENT4B PAPD5|TRF4-2|TUT3 terminal nucleotidyltransferase 4B protein-coding 118.167-64 chr8 115543544 115543945 + 0.666667 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 124269 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 176.5-48 chr3 166100378 166101059 + 0.666667 NA Intergenic Intergenic -263295 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 117.833-78 chr8 6737608 6737894 + 0.666667 NA intron (NM_018361, intron 4 of 7) intron (NM_018361, intron 4 of 7) -7413 NR_039803 100616348 NR_039803 ENSG00000266038 MIR4659A mir-4659a microRNA 4659a ncRNA 119.333-17 chr11 13056163 13056467 + 0.666667 NA Intergenic AluJr|SINE|Alu 46999 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 251.167-7 chr2 66321838 66322378 + 0.666667 NA Intergenic L1MB5|LINE|L1 36220 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 188-34 chr20 22866675 22867021 + 0.666667 NA Intergenic L1MCa|LINE|L1 -168572 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 167-26 chr16 56179092 56179429 + 0.666667 NA intron (NR_027078, intron 2 of 4) L1MB3|LINE|L1 11834 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 125.833-90 chr8 106482967 106483197 + 0.666667 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 35158 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 325.333-8 chr6 2672691 2673490 + 0.666667 NA intron (NM_001012418, intron 11 of 12) intron (NM_001012418, intron 11 of 12) -38487 NR_131168 154386 Hs.680574 NM_152554 ENSG00000164385 LINC01600 C6orf195|bA145H9.2 long intergenic non-protein coding RNA 1600 ncRNA 331-2 chr13 96746934 96747660 + 0.666667 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 236875 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 171.833-22 chr2 188612344 188612768 + 0.666667 NA Intergenic HERV16-int|LTR|ERVL 177567 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 162.667-56 chr4 78508942 78509347 + 0.666667 NA intron (NM_025074, intron 63 of 73) intron (NM_025074, intron 63 of 73) -42626 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 158-61 chr9 77353238 77353625 + 0.666667 NA exon (NM_015186, exon 54 of 69) exon (NM_015186, exon 54 of 69) -94218 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 234.5-5 chr11 29748739 29749292 + 0.666667 NA Intergenic Intergenic 130213 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 176.5-2 chr1 231289838 231290277 + 0.666667 NA Intergenic Intergenic 47795 NM_175876 149371 Hs.356198 NM_175876 ENSG00000116903 EXOC8 EXO84|Exo84p|SEC84 exocyst complex component 8 protein-coding 149.333-26 chr13 107886175 107886519 + 0.666667 NA Intergenic LTR16|LTR|ERVL -18851 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 128.333-39 chr14 73215999 73216502 + 0.666667 NA intron (NM_000021, intron 10 of 11) L1ME1|LINE|L1 -21256 NM_173462 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 129-15 chr10 80049004 80049477 + 0.666667 NA intron (NR_027432, intron 3 of 3) intron (NR_027432, intron 3 of 3) -29406 NM_001270372 80195 Hs.169982 NM_025125 ENSG00000133678 TMEM254 C10orf57|bA369J21.6 transmembrane protein 254 protein-coding 120.5-34 chr15 64997005 64997363 + 0.666667 NA Intergenic MLT2B4|LTR|ERVL -7270 NM_016630 51324 Hs.242458 NM_016630 ENSG00000090487 SPG21 ABHD21|ACP33|BM-019|GL010|MAST SPG21 abhydrolase domain containing, maspardin protein-coding 138-16 chr10 113134615 113134999 + 0.666667 NA intron (NM_001349870, intron 1 of 11) intron (NM_001349870, intron 1 of 11) 5536 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 246-21 chr9 122147824 122148602 + 0.666667 NA exon (NM_001318195, exon 3 of 4) exon (NM_001318195, exon 3 of 4) 11566 NM_014222 4702 Hs.495039 NM_014222 ENSG00000119421 NDUFA8 CI-19KD|CI-PGIV|PGIV NADH:ubiquinone oxidoreductase subunit A8 protein-coding 166.333-44 chr2 211083206 211083510 + 0.666667 NA Intergenic Intergenic 465787 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 164-54 chr5 73597702 73597985 + 0.666667 NA Intergenic Charlie10|DNA|hAT-Charlie -28315 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 134.333-50 chr18 53705739 53706042 + 0.666667 NA Intergenic MSTB2|LTR|ERVL-MaLR -124831 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 117.667-99 chr5 15834277 15834664 + 0.666667 NA intron (NM_001278317, intron 2 of 3) LTR37B|LTR|ERV1 -100712 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 180.167-39 chr4 32949970 32950440 + 0.666667 NA Intergenic Intergenic 599167 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 117.167-33 chr18 47300116 47300377 + 0.666667 NA intron (NR_147192, intron 1 of 2) L1ME2z|LINE|L1 14522 NR_147192 110175910 Hs.639112 NR_147192 ENSG00000267761 MIR4527HG - MIR4527 host gene ncRNA 246.167-18 chr3 68580481 68581114 + 0.666667 NA Intergenic Intergenic 80160 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 158.667-71 chr5 150938988 150939483 + 0.666667 NA intron (NR_026867, intron 4 of 4) L1MB8|LINE|L1 7349 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 181.5-4 chr10 65671119 65671697 + 0.666667 NA intron (NR_120647, intron 3 of 5) intron (NR_120647, intron 3 of 5) 99983 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 186-3 chr1 180411780 180412172 + 0.666667 NA intron (NM_032360, intron 5 of 7) Tigger1|DNA|TcMar-Tigger 26414 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 127-38 chr17 60592096 60592591 + 0.666667 NA Intergenic L1PA16|LINE|L1 -7840 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 118.833-20 chr14 36485316 36485715 + 0.666667 NA intron (NR_161365, intron 2 of 4) intron (NR_161365, intron 2 of 4) 28020 NR_161362 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 145.5-53 chr4 63655060 63655516 + 0.666667 NA Intergenic Intergenic 754162 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 158.667-96 chr9 101869165 101869490 + 0.666667 NA Intergenic LTR16A1|LTR|ERVL -130747 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 142.667-39 chr18 75092365 75092669 + 0.666667 NA Intergenic L1M4b|LINE|L1 112996 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 238.5-20 chr3 41242136 41242618 + 0.666667 NA Intergenic Intergenic 42872 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 151.833-34 chr2 238628270 238628610 + 0.666667 NA Intergenic Intergenic -72941 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 161-69 chr7 39391531 39391847 + 0.666667 NA intron (NM_001370959, intron 5 of 9) intron (NM_001370959, intron 5 of 9) 14657 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 216.833-10 chr13 103106303 103106645 + 0.666667 NA Intergenic Charlie1a|DNA|hAT-Charlie -40057 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 138-72 chr3 116134955 116135298 + 0.666667 NA intron (NM_001318915, intron 1 of 8) MIRb|SINE|MIR -224898 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 140.833-45 chr3 190380287 190380666 + 0.666667 NA Intergenic L2c|LINE|L2 -7396 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 157.333-77 chr9 101775370 101775807 + 0.666667 NA Intergenic L1MEd|LINE|L1 -37008 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 154.667-12 chr11 82790282 82790591 + 0.666667 NA Intergenic Intergenic -56572 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 168-63 chr5 149076138 149076734 + 0.666667 NA intron (NR_122044, intron 2 of 2) L1PA4|LINE|L1 13119 NR_122044 255187 Hs.149321 NR_122044 ENSG00000250072 SH3TC2-DT - SH3TC2 divergent transcript ncRNA 177.167-8 chr15 23965672 23966047 + 0.666667 NA Intergenic L1MCa|LINE|L1 -9288 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 158.667-83 chr7 32316089 32316465 + 0.666667 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) -16949 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 135.5-32 chr14 78657414 78657810 + 0.666667 NA intron (NR_073547, intron 6 of 20) intron (NR_073547, intron 6 of 20) 253893 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 113.333-50 chr2 28863034 28863499 + 0.666667 NA intron (NM_017910, intron 2 of 6) AluJr|SINE|Alu 7043 NM_017910 55006 Hs.468026 NM_017910 ENSG00000171103 TRMT61B - tRNA methyltransferase 61B protein-coding 119-58 chr2 215113340 215113597 + 0.666667 NA intron (NR_103740, intron 1 of 54) MER5A1|DNA|hAT-Charlie 25158 NM_173076 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 121.5-99 chr7 121558058 121558279 + 0.666667 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -161800 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 138-74 chr3 154028947 154029172 + 0.666667 NA intron (NR_037901, intron 3 of 3) intron (NR_037901, intron 3 of 3) -91944 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 113.333-89 chr5 58363749 58364016 + 0.666667 NA Intergenic Intergenic 96204 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 187.333-29 chr18 80053481 80054022 + 0.666667 NA Intergenic L1PB4|LINE|L1 -13505 NR_103445 100506070 Hs.593610 NR_103445 ENSG00000261126 RBFADN - RBFA downstream neighbor ncRNA 119-16 chr10 90137880 90138201 + 0.666667 NA Intergenic HUERS-P3b-int|LTR|ERV1 -180667 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 142.5-42 chr2 104178141 104178568 + 0.666667 NA Intergenic L1M1|LINE|L1 229978 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 175.333-13 chr14 43089662 43090072 + 0.666667 NA Intergenic L1MD2|LINE|L1 1417416 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 124.667-89 chr4 157954899 157955189 + 0.666667 NA Intergenic Intergenic -215708 NR_147408 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 151.667-71 chr5 160763987 160764409 + 0.666667 NA intron (NM_001366652, intron 2 of 24) L1PB1|LINE|L1 -78807 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 138-44 chr17 73788715 73789087 + 0.666667 NA intron (NR_040020, intron 1 of 6) LTR40b|LTR|ERVL 2079 NR_040020 400620 Hs.348644 NR_040020 ENSG00000234721 LINC02092 - long intergenic non-protein coding RNA 2092 ncRNA 195-29 chr3 55109675 55110222 + 0.666667 NA Intergenic MLT1K|LTR|ERVL-MaLR -68224 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 143.5-38 chr2 16883838 16884265 + 0.666667 NA Intergenic L1M6|LINE|L1 -218217 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 189.667-52 chr9 13474584 13475024 + 0.666667 NA Intergenic L1PA15|LINE|L1 -43475 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 117-122 chr8 123842237 123842457 + 0.666667 NA Intergenic L1M3c|LINE|L1 -9640 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 175.667-23 chr18 2986911 2987350 + 0.666667 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) 24817 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 115-31 chr16 61790005 61790211 + 0.666667 NA intron (NM_001796, intron 7 of 11) intron (NM_001796, intron 7 of 11) 246330 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 176.667-65 chr5 129539413 129539700 + 0.666667 NA intron (NM_133638, intron 6 of 22) MLT1D|LTR|ERVL-MaLR -78867 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 238.667-36 chrX 126912648 126913113 + 0.666667 NA Intergenic Intergenic 93151 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 151.167-18 chr14 97183244 97183637 + 0.666667 NA Intergenic Intergenic 28583 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 123.833-40 chr3 96987698 96987970 + 0.666667 NA exon (NM_001278301, exon 3 of 4) exon (NM_001278301, exon 3 of 4) 173240 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 164.333-72 chr6 88898312 88898608 + 0.666667 NA intron (NM_001286428, intron 5 of 13) HAL1ME|LINE|L1 65158 NM_001286426 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 191.667-49 chr6 47828473 47829081 + 0.666667 NA Intergenic Intergenic 41709 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 114.333-50 chr17 26803018 26803238 + 0.666667 NA Intergenic Intergenic 286113 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 185.333-20 chr15 77368579 77369012 + 0.666667 NA intron (NM_024776, intron 1 of 7) Helitron1Nb_Mam|RC|Helitron 51309 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 224.5-6 chr13 60535349 60535959 + 0.666667 NA intron (NM_030794, intron 12 of 13) intron (NM_030794, intron 12 of 13) -137301 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 162.667-27 chr17 16430411 16431127 + 0.666667 NA intron (NM_016113, intron 10 of 14) AluSx3|SINE|Alu -8218 NR_027164 125144 Hs.368934 NM_152350 ENSG00000175061 SNHG29 C17orf45|C17orf76-AS1|FAM211A-AS1|LRRC75A-AS1|NCRNA00188|TSAP19 small nucleolar RNA host gene 29 ncRNA 120.5-22 chr11 119241961 119242219 + 0.666667 NA intron (NM_005188, intron 2 of 15) L2|LINE|L2 35814 NM_005188 867 Hs.504096 NM_005188 ENSG00000110395 CBL C-CBL|CBL2|FRA11B|NSLL|RNF55 Cbl proto-oncogene protein-coding 131.167-62 chr5 55327892 55328475 + 0.666667 NA intron (NM_015360, intron 4 of 26) intron (NM_015360, intron 4 of 26) 20194 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 249.333-7 chr15 26321561 26322033 + 0.666667 NA Intergenic Intergenic 205984 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 152.5-46 chr4 36360662 36361003 + 0.666667 NA Intergenic Intergenic 65596 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 123.833 chr1 35451639 35451945 + 0.666667 NA intron (NM_024874, intron 12 of 20) intron (NM_024874, intron 12 of 20) -85715 NR_046659 100861513 Hs.585397 NR_046659 ENSG00000227409 ZMYM4-AS1 - ZMYM4 antisense RNA 1 ncRNA 203-35 chr5 82793027 82793639 + 0.666667 NA Intergenic Intergenic -46822 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 236.333 chr1 80597611 80598023 + 0.666667 NA intron (NR_125940, intron 2 of 3) L1PB1|LINE|L1 -43470 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 161.333-25 chr15 46397145 46397634 + 0.666667 NA Intergenic L1MA7|LINE|L1 692194 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 170-15 chr14 33013542 33013944 + 0.666667 NA intron (NM_001165893, intron 1 of 10) L1ME4b|LINE|L1 74864 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 276.167-6 chr21 24048116 24048577 + 0.666667 NA Intergenic Intergenic 273031 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 150-70 chr6 56360043 56360342 + 0.666667 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 33936 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 146.5-70 chr5 56443385 56443802 + 0.666667 NA Intergenic L1ME3G|LINE|L1 38176 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 131.333-33 chr15 72832862 72833090 + 0.666667 NA Intergenic Intergenic -49218 NM_001365225 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 138.667-32 chr14 72673336 72673725 + 0.666667 NA intron (NM_001280544, intron 8 of 9) intron (NM_001280544, intron 8 of 9) 156710 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 165.667-59 chr5 89338090 89338564 + 0.666667 NA intron (NR_136219, intron 7 of 9) LTR16B1|LTR|ERVL -434222 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 161-65 chr6 146100004 146100398 + 0.666667 NA intron (NM_001278065, intron 2 of 9) L1ME3B|LINE|L1 71003 NM_001278067 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 183-18 chr2 22452784 22453118 + 0.666667 NA Intergenic Intergenic -83528 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 145.667-56 chr20 57563489 57563792 + 0.666667 NA exon (NM_002591, exon 6 of 10) exon (NM_002591, exon 6 of 10) 2530 NM_002591 5105 Hs.1872 NM_002591 ENSG00000124253 PCK1 PCKDC|PEPCK-C|PEPCK1|PEPCKC phosphoenolpyruvate carboxykinase 1 protein-coding 126.333-111 chr8 135203881 135204212 + 0.666667 NA Intergenic L1PA16|LINE|L1 -30085 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 162.5-61 chr5 141378546 141378989 + 0.666667 NA intron (NM_018919, intron 1 of 3) intron (NM_018919, intron 1 of 3) -3975 NM_018920 56108 Hs.368160 NM_018920 ENSG00000253537 PCDHGA7 PCDH-GAMMA-A7 protocadherin gamma subfamily A, 7 protein-coding 298.167-10 chr5 145194204 145194964 + 0.666667 NA Intergenic L1P4|LINE|L1 640758 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 193.167-6 chr10 55942434 55942988 + 0.666667 NA Intergenic Intergenic -314769 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 115-75 chr6 117776385 117776802 + 0.666667 NA Intergenic L2c|LINE|L2 101124 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 129.667-11 chr10 132525024 132525462 + 0.666667 NA intron (NR_158224, intron 1 of 3) intron (NR_158224, intron 1 of 3) 11680 NR_158224 107984282 Hs.142505 NR_158224 LOC107984282 - uncharacterized LOC107984282 ncRNA 233.667-19 chr5 37982530 37982970 + 0.666667 NA Intergenic AluSx1|SINE|Alu 34259 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 322-7 chr7 89117780 89118351 + 0.666667 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -322328 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 210-32 chr7 30076446 30076850 + 0.666667 NA intron (NM_001350973, intron 13 of 13) intron (NM_001350973, intron 13 of 13) 31563 NM_001363474 84725 Hs.233495 NM_032639 ENSG00000106086 PLEKHA8 FAPP2 pleckstrin homology domain containing A8 protein-coding 190.667 chr1 38472639 38473007 + 0.666667 NA Intergenic L1MB3|LINE|L1 -2373 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 140.333-53 chr4 36707451 36707870 + 0.666667 NA Intergenic MER57C2|LTR|ERV1 -65760 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 147-77 chr6 133645461 133645831 + 0.666667 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -175501 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 175.667-63 chr7 70036710 70037225 + 0.666667 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 438492 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 236.833-11 chr3 79135037 79135392 + 0.666667 NA intron (NM_002941, intron 2 of 30) L1MC5a|LINE|L1 -115755 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 171.667-11 chr11 39790493 39790848 + 0.666667 NA Intergenic Intergenic 502460 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 128-44 chr2 39022807 39023073 + 0.666667 NA exon (NM_005633, exon 10 of 23) exon (NM_005633, exon 10 of 23) -62596 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 167.667-65 chr4 63486812 63487148 + 0.666667 NA Intergenic L2|LINE|L2 922470 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 113.333-21 chr11 7047489 7047744 + 0.666667 NA intron (NM_176822, intron 5 of 11) L1ME2|LINE|L1 27147 NM_176822 338323 Hs.449637 NM_176822 ENSG00000158077 NLRP14 CLR11.2|GC-LRR|NALP14|NOD5|PAN8 NLR family pyrin domain containing 14 protein-coding 117.667-61 chr2 52066076 52066325 + 0.666667 NA intron (NR_135237, intron 7 of 10) L1M5|LINE|L1 -304448 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 120.333-120 chr8 123235042 123235326 + 0.666667 NA intron (NM_001204180, intron 4 of 5) intron (NM_001204180, intron 4 of 5) 6193 NM_032847 84933 Hs.707401 NM_032847 ENSG00000189376 C8orf76 - chromosome 8 open reading frame 76 protein-coding 173-8 chr10 29169452 29169917 + 0.666667 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -119386 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 175.667-61 chr6 158461861 158462257 + 0.666667 NA intron (NM_020245, intron 6 of 13) MER34C_|LTR|ERV1 -74377 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 169.667-15 chr12 9368799 9369207 + 0.666667 NA non-coding (NR_120479, exon 1 of 4) non-coding (NR_120479, exon 1 of 4) 1539 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 188.5-49 chr7 35355209 35355708 + 0.666667 NA intron (NR_038864, intron 2 of 2) MLT1I|LTR|ERVL-MaLR 41603 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 182.5-9 chr12 73364976 73365250 + 0.666667 NA Intergenic Intergenic 205923 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 190.333-6 chr10 15319847 15320181 + 0.666667 NA intron (NM_001010924, intron 1 of 7) L1PA15|LINE|L1 51275 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 133.5-42 chr3 170493034 170493458 + 0.666667 NA intron (NM_020949, intron 4 of 7) intron (NM_020949, intron 4 of 7) 25961 NR_135555 101928583 Hs.407600 NR_135555 ENSG00000285051 SLC7A14-AS1 - SLC7A14 antisense RNA 1 ncRNA 139.167-22 chr14 68312743 68313139 + 0.666667 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 315846 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 163-38 chr3 6365932 6366470 + 0.666667 NA Intergenic MIRb|SINE|MIR 439248 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 131.667-12 chr10 51045509 51045858 + 0.666667 NA intron (NM_001098512, intron 1 of 17) L1ME4c|LINE|L1 22869 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 190.5-54 chr9 13815318 13815676 + 0.666667 NA Intergenic Intergenic -112474 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 189.333-10 chr14 54745421 54745737 + 0.666667 NA intron (NM_015589, intron 3 of 11) L2c|LINE|L2 -9254 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 129.833-4 chr1 213920606 213921063 + 0.666667 NA intron (NR_037850, intron 2 of 5) intron (NR_037850, intron 2 of 5) -3915 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 154-17 chr12 115011516 115012069 + 0.666667 NA Intergenic L1MC1|LINE|L1 -327617 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 122.333-65 chr22 16774458 16774679 + 0.666667 NA Intergenic L1M3f|LINE|L1 -26130 NR_134584 101929350 Hs.561087 NR_134584 ENSG00000235343 LINC01665 - long intergenic non-protein coding RNA 1665 ncRNA 155-80 chr9 73461268 73461602 + 0.666667 NA Intergenic MamGypLTR1b|LTR|Gypsy 309570 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 189.167-25 chr18 68268465 68269005 + 0.666667 NA Intergenic Intergenic 446373 NM_001350517 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 153.833-48 chr4 176967090 176967640 + 0.666667 NA Intergenic MER76|LTR|ERVL 91663 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 136-35 chr2 78266869 78267317 + 0.666667 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 23638 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 247.333-10 chr2 137762874 137763624 + 0.666667 NA Intergenic L1PA15|LINE|L1 164683 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 142.5-16 chr11 23082126 23082498 + 0.666667 NA Intergenic Intergenic -221838 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 161.167-63 chrX 12318554 12318892 + 0.666667 NA intron (NM_001368396, intron 1 of 16) L1MA4|LINE|L1 -179957 NM_001368400 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 218.333-26 chr4 30824951 30825614 + 0.666667 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 104913 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 154.5-64 chr6 135971111 135971422 + 0.666667 NA intron (NM_018945, intron 2 of 12) MLT1B|LTR|ERVL-MaLR 101561 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 114-37 chr13 34311801 34312019 + 0.666667 NA Intergenic Intergenic -36133 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 138.333-83 chr4 89678761 89679159 + 0.666667 NA Intergenic Intergenic -157441 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 228.5-12 chr2 37630724 37631129 + 0.666667 NA Intergenic Intergenic 41273 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 185.333-2 chr1 61836372 61836696 + 0.666667 NA intron (NM_001350145, intron 17 of 43) intron (NM_001350145, intron 17 of 43) -9541 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 114-101 chr8 128206608 128206951 + 0.666667 NA Intergenic Intergenic 56663 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 252.334-5 chr5 146504319 146505316 + 0.666667 NA intron (NM_006706, intron 18 of 21) AluSz|SINE|Alu 11296 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 208-47 chr8 142652541 142652980 + 0.666667 NA Intergenic LTR24|LTR|ERV1 14164 NR_134305 101928087 Hs.126101 NR_134305 ENSG00000277332 LOC101928087 - uncharacterized LOC101928087 ncRNA 203-37 chr6 18713255 18713630 + 0.666667 NA intron (NR_149116, intron 6 of 7) intron (NR_149116, intron 6 of 7) 141658 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 165-10 chr11 13424249 13424588 + 0.666667 NA intron (NM_001297741, intron 1 of 7) intron (NM_001297741, intron 1 of 7) 15861 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 220.5-20 chr2 121722436 121722856 + 0.666667 NA intron (NR_037857, intron 3 of 3) Cheshire|DNA|hAT-Charlie 14229 NM_032390 84365 Hs.367842 NM_032390 ENSG00000155438 NIFK MKI67IP|Nopp34 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 178.333-17 chr16 89664137 89664599 + 0.666667 NA intron (NM_001271910, intron 2 of 2) MLT1E1A|LTR|ERVL-MaLR 6300 NR_073516 124045 Hs.655171 NM_153025 ENSG00000167523 SPATA33 C16orf55 spermatogenesis associated 33 protein-coding 126-61 chr3 183242807 183243025 + 0.666667 NA intron (NM_015078, intron 15 of 29) THE1B-int|LTR|ERVL-MaLR -10337 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 121.167-53 chr3 9720730 9720960 + 0.666667 NA intron (NM_001308388, intron 16 of 19) MIR|SINE|MIR -10884 NM_001319050 7862 Hs.1004 NM_004634 ENSG00000156983 BRPF1 BR140|IDDDFP bromodomain and PHD finger containing 1 protein-coding 132-11 chr10 33758016 33758333 + 0.666667 NA Intergenic Intergenic 14506 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 194.167-20 chr4 31246027 31246759 + 0.666667 NA Intergenic L1M3f|LINE|L1 75249 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 121.833-70 chr6 80383911 80384353 + 0.666667 NA Intergenic MLT2A1|LTR|ERVL 277461 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 154.833-23 chr18 9381160 9381440 + 0.666667 NA intron (NM_020648, intron 3 of 4) Charlie1|DNA|hAT-Charlie 46527 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 204.5-29 chr5 9304872 9305299 + 0.666667 NA intron (NM_003966, intron 5 of 22) HAL1|LINE|L1 -206248 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 135.167-5 chr1 88127815 88128093 + 0.666667 NA Intergenic MIR|SINE|MIR -556190 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 122.333-11 chr10 70740550 70740763 + 0.666667 NA intron (NM_080722, intron 11 of 21) intron (NM_080722, intron 11 of 21) 41917 NR_134533 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 132.333-101 chr8 64268835 64269123 + 0.666667 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 99579 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 190.333-29 chr19 28833300 28833784 + 0.666667 NA Intergenic Intergenic -105848 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 157.5-43 chr3 125127509 125127763 + 0.666667 NA intron (NM_001195483, intron 5 of 12) Arthur1A|DNA|hAT-Tip100 23916 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 145.833 chr1 14910971 14911347 + 0.666667 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -12970 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 166.167-67 chr9 9874709 9875273 + 0.666667 NA intron (NM_002839, intron 5 of 45) MIRc|SINE|MIR 75599 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 213.667-20 chr2 195790120 195790663 + 0.666667 NA intron (NM_018897, intron 57 of 64) L1PA16|LINE|L1 133165 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 148.5-37 chr2 65510625 65511047 + 0.666667 NA Intergenic Intergenic -78237 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 123.333-85 chr4 176082839 176083158 + 0.666667 NA intron (NM_181265, intron 1 of 28) intron (NM_181265, intron 1 of 28) 17157 NM_001350727 116966 Hs.532056 NM_170710 ENSG00000150627 WDR17 - WD repeat domain 17 protein-coding 226.667 chr1 49839932 49840369 + 0.666667 NA intron (NM_001323575, intron 2 of 12) L1P4|LINE|L1 183804 NM_001323573 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 117.333-8 chr1 109564141 109564338 + 0.666667 NA intron (NM_006496, intron 1 of 8) intron (NM_006496, intron 1 of 8) 15624 NM_006496 2773 Hs.73799 NM_006496 ENSG00000065135 GNAI3 87U6|ARCND1 G protein subunit alpha i3 protein-coding 140.333-13 chr10 125812543 125812831 + 0.666667 NA intron (NR_136678, intron 1 of 6) intron (NR_136678, intron 1 of 6) -7053 NR_039704 100616327 NR_039704 ENSG00000265092 MIR4484 mir-4484 microRNA 4484 ncRNA 181.833-42 chr5 44541881 44542254 + 0.666667 NA Intergenic MIR3|SINE|MIR -31785 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 138.5-44 chr2 189941710 189941958 + 0.666667 NA Intergenic L1M3f|LINE|L1 120895 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 161.333-46 chr3 56122002 56122335 + 0.666667 NA intron (NR_132749, intron 6 of 17) L1ME3G|LINE|L1 -269574 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 215.5-28 chr3 114932974 114933479 + 0.666667 NA intron (NM_001348805, intron 3 of 10) MLT1H|LTR|ERVL-MaLR -32601 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 156.333-49 chr2 202687337 202687824 + 0.666667 NA intron (NM_173511, intron 1 of 7) AluJr|SINE|Alu 52611 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 152.667-22 chr12 97089369 97089708 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger 182072 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 155.667-55 chr4 89633121 89633435 + 0.666667 NA Intergenic Intergenic -203123 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 162.667-70 chr6 48773126 48773445 + 0.666667 NA Intergenic Intergenic 689968 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 187.667-11 chr12 10074501 10074912 + 0.666667 NA intron (NM_001297750, intron 5 of 6) intron (NM_001297750, intron 5 of 6) 24279 NM_001297751 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 222-23 chr20 33403980 33404432 + 0.666667 NA Intergenic AluSx|SINE|Alu -2637 NM_001278168 51654 Hs.435952 NM_016082 ENSG00000101391 CDK5RAP1 C20orf34|C42|CGI-05|HSPC167 CDK5 regulatory subunit associated protein 1 protein-coding 146.833-44 chr3 148810608 148810978 + 0.666667 NA Intergenic THE1A|LTR|ERVL-MaLR -17018 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 166.5-51 chr5 100889513 100889823 + 0.666667 NA intron (NM_005668, intron 2 of 4) intron (NM_005668, intron 2 of 4) 13614 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 142-31 chr14 72536080 72536304 + 0.666667 NA exon (NM_001204424, exon 16 of 18) exon (NM_001204424, exon 16 of 18) 19372 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 171.333-21 chr12 90890861 90891277 + 0.666667 NA Intergenic L2b|LINE|L2 -26954 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 151.833-49 chr5 132934854 132935096 + 0.666667 NA intron (NM_014423, intron 2 of 20) A-rich|Low_complexity|Low_complexity 28659 NM_014423 27125 Hs.519313 NM_014423 ENSG00000072364 AFF4 AF5Q31|CHOPS|MCEF AF4/FMR2 family member 4 protein-coding 141.667-23 chr13 101529727 101530050 + 0.666667 NA intron (NM_001271756, intron 1 of 9) THE1C|LTR|ERVL-MaLR 39936 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 261-8 chr15 61768575 61769137 + 0.666667 NA Intergenic Intergenic 38938 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 131.5-17 chr11 97999024 97999257 + 0.666667 NA Intergenic Intergenic -1021809 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 179.667-12 chr14 41280451 41280859 + 0.666667 NA Intergenic Intergenic 325944 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 123-23 chr14 75541383 75541673 + 0.666667 NA intron (NM_006399, intron 2 of 2) intron (NM_006399, intron 2 of 2) 19059 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 162.167-49 chr7 18637051 18637310 + 0.666667 NA intron (NM_058176, intron 7 of 22) L1ME3E|LINE|L1 127910 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 149.667-4 chr1 117440499 117440737 + 0.666667 NA intron (NM_006699, intron 5 of 12) intron (NM_006699, intron 5 of 12) 73169 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 198-51 chr6 61506338 61506871 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr -67526 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 119.333-38 chr17 75820098 75820534 + 0.666667 NA intron (NM_001080419, intron 13 of 15) MIR|SINE|MIR 24401 NM_199242 201294 Hs.41045 NM_199242 ENSG00000092929 UNC13D FHL3|HLH3|HPLH3|Munc13-4 unc-13 homolog D protein-coding 128-29 chr14 46403441 46403759 + 0.666667 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -67759 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 158.833-36 chr22 49655672 49655968 + 0.666667 NA intron (NM_001289922, intron 1 of 5) MamRTE1|LINE|RTE-BovB 1699 NR_110523 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 127-94 chr7 108566209 108566578 + 0.666667 NA intron (NM_001287599, intron 1 of 2) intron (NM_001287599, intron 1 of 2) 3060 NM_182529 168451 Hs.707689 NM_182529 ENSG00000177683 THAP5 - THAP domain containing 5 protein-coding 140-34 chr18 34182407 34182680 + 0.666667 NA intron (NM_001353232, intron 1 of 9) L1MB7|LINE|L1 39927 NM_001282527 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 193-46 chr9 77108523 77108890 + 0.666667 NA Intergenic L1MD|LINE|L1 -68739 NM_015186 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 206-23 chr3 103874481 103874860 + 0.666667 NA Intergenic Intergenic -350554 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 204.833-19 chr4 59507241 59507598 + 0.666667 NA Intergenic Intergenic 493846 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 189.667-41 chr5 128641789 128642154 + 0.666667 NA Intergenic Mam_R4|LINE|Dong-R4 -103726 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 191.667-48 chr6 44321587 44322255 + 0.666667 NA Intergenic AluSz|SINE|Alu -8574 NM_020745 57505 Hs.158381 NM_020745 ENSG00000124608 AARS2 AARSL|COXPD8|LKENP|MT-ALARS|MTALARS alanyl-tRNA synthetase 2, mitochondrial protein-coding 147.333-103 chrX 144371739 144372071 + 0.666667 NA Intergenic L1MB7|LINE|L1 487834 NM_001012989 389898 Hs.585177 NM_001012989 ENSG00000276380 UBE2NL Li174 ubiquitin conjugating enzyme E2 N like (gene/pseudogene) protein-coding 198.167-28 chr5 21053283 21053678 + 0.666667 NA Intergenic Intergenic -406000 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 164.667-30 chr16 82279683 82280170 + 0.666667 NA Intergenic AluSx1|SINE|Alu -109702 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 229-34 chr5 24713658 24714285 + 0.666667 NA Intergenic Intergenic -68993 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 164-5 chr10 14804602 14805153 + 0.666667 NA Intergenic FLAM_C|SINE|Alu -29980 NM_031453 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 143.667-103 chr8 79306402 79306652 + 0.666667 NA Intergenic L1MA9|LINE|L1 -25661 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 255.667-7 chr14 23528941 23529497 + 0.666667 NA intron (NM_033400, intron 6 of 9) intron (NM_033400, intron 6 of 9) 16409 NR_046052 79178 Hs.655179 NM_024328 ENSG00000259431 THTPA THTP|THTPASE thiamine triphosphatase protein-coding 163.333-69 chr6 69646750 69647134 + 0.666667 NA Intergenic L1MEj|LINE|L1 149524 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 123.667-109 chr8 107226834 107227044 + 0.666667 NA Intergenic Intergenic 109576 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 114.667-54 chr2 105455509 105455721 + 0.666667 NA Intergenic Intergenic -17102 NM_001318897 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 128.667-26 chr11 82362880 82363177 + 0.666667 NA intron (NR_120571, intron 1 of 7) L1MC3|LINE|L1 40885 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 254.167-9 chr20 20347089 20347548 + 0.666667 NA intron (NM_015585, intron 26 of 26) L1MA8|LINE|L1 -20786 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 148.5-9 chr10 81047594 81047946 + 0.666667 NA Intergenic Intergenic 397973 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 184.667-9 chr11 61836129 61836639 + 0.666667 NA intron (NM_004265, intron 1 of 11) AluSx|SINE|Alu 8084 NM_004265 9415 Hs.502745 NM_004265 ENSG00000134824 FADS2 D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13 fatty acid desaturase 2 protein-coding 128.167-58 chr4 30511501 30511788 + 0.666667 NA Intergenic HAL1|LINE|L1 -208725 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 119.833-33 chr18 11774605 11774856 + 0.666667 NA intron (NM_001369387, intron 4 of 11) intron (NM_001369387, intron 4 of 11) 22645 NM_001369387 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 138.167-67 chr6 20019026 20019570 + 0.666667 NA Intergenic L1MA8|LINE|L1 181928 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 115-73 chr6 54447840 54448286 + 0.666667 NA Intergenic Intergenic 139622 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 156.833-41 chr4 101316023 101316291 + 0.666667 NA intron (NM_001130691, intron 1 of 12) MLT1J|LTR|ERVL-MaLR 14257 NR_031656 100302193 NR_031656 ENSG00000221265 MIR1255A MIRN1255A|hsa-mir-1255a microRNA 1255a ncRNA 134.333-89 chr5 23667278 23667553 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 159760 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 212.667-16 chr12 63983864 63984325 + 0.666667 NA exon (NM_020762, exon 2 of 22) exon (NM_020762, exon 2 of 22) 139394 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 163.334-4 chr5 90015377 90015964 + 0.666667 NA TTS (NR_037433) TTS (NR_037433) 1050 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 150.833-5 chr12 21802277 21802660 + 0.666667 NA intron (NM_020297, intron 37 of 37) MER33|DNA|hAT-Charlie -27762 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 144.333-52 chr20 7960232 7960598 + 0.666667 NA Intergenic L1MEd|LINE|L1 -19957 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 209.667-26 chr3 104569353 104570134 + 0.666667 NA Intergenic Intergenic -796970 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 237.333-13 chr19 55424479 55424933 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR -16918 NM_014501 27338 Hs.396393 NM_014501 ENSG00000108106 UBE2S E2-EPF|E2EPF|EPF5 ubiquitin conjugating enzyme E2 S protein-coding 141.333-64 chr4 27525951 27526268 + 0.666667 NA Intergenic L1MEd|LINE|L1 308630 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 233.333-17 chr15 86246340 86246986 + 0.666667 NA intron (NM_152336, intron 6 of 24) MER73|LTR|ERVL 70305 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 157.333-28 chr17 42419620 42419887 + 0.666667 NA intron (NM_012232, intron 1 of 1) intron (NM_012232, intron 1 of 1) 3503 NM_012232 284119 Hs.437191 NM_012232 ENSG00000177469 CAVIN1 CAVIN|CGL4|FKSG13|PTRF|cavin-1 caveolae associated protein 1 protein-coding 142-64 chr3 137313035 137313381 + 0.666667 NA Intergenic MER5A1|DNA|hAT-Charlie 355225 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 156-55 chr3 152273935 152274311 + 0.666667 NA intron (NM_001314057, intron 1 of 11) intron (NM_001314057, intron 1 of 11) -4497 NR_027038 401093 Hs.725347 NR_027037 ENSG00000229619 MBNL1-AS1 - MBNL1 antisense RNA 1 ncRNA 123-58 chr21 15757530 15757736 + 0.666667 NA intron (NM_001352560, intron 1 of 23) intron (NM_001352560, intron 1 of 23) 27651 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 137.333-37 chr17 48758939 48759229 + 0.666667 NA Intergenic Intergenic -30335 NM_006361 10481 Hs.66731 NM_006361 ENSG00000159184 HOXB13 HPC9|PSGD homeobox B13 protein-coding 124.333-55 chr20 31487544 31487802 + 0.666667 NA TTS (NR_024358) TTS (NR_024358) 1895 NR_024358 140875 Hs.283478 NR_024358 ENSG00000233354 LINC00028 C20orf93|NCRNA00028|dJ1093G12.6 long intergenic non-protein coding RNA 28 ncRNA 182.5-46 chr9 10595946 10596427 + 0.666667 NA intron (NM_002839, intron 2 of 45) MIRb|SINE|MIR 16816 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 183.833-3 chr10 82180182 82180628 + 0.666667 NA intron (NM_001165973, intron 2 of 10) L1MB1|LINE|L1 52515 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 166.5-48 chr5 3022531 3022951 + 0.666667 NA Intergenic Intergenic 104887 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 133.667-5 chr1 71874038 71874264 + 0.666667 NA intron (NM_173808, intron 2 of 6) intron (NM_173808, intron 2 of 6) -37139 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 164.333-48 chr4 34061238 34061536 + 0.666667 NA Intergenic L2a|LINE|L2 -21494 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 153.333-66 chr5 141947071 141947390 + 0.666667 NA intron (NM_016580, intron 3 of 3) intron (NM_016580, intron 3 of 3) 11832 NM_016580 51294 Hs.439474 NM_016580 ENSG00000113555 PCDH12 VE-cadherin-2|VECAD2 protocadherin 12 protein-coding 140-8 chr10 49462479 49462930 + 0.666667 NA intron (NM_001346440, intron 18 of 20) L1MC4|LINE|L1 61577 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 123.667-114 chr8 119938237 119938483 + 0.666667 NA intron (NM_022783, intron 3 of 8) intron (NM_022783, intron 3 of 8) 64638 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 199.667-39 chr3 13005539 13006028 + 0.666667 NA intron (NM_001134382, intron 1 of 13) intron (NM_001134382, intron 1 of 13) -18682 NM_001330619 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 124-71 chr5 5088357 5088583 + 0.666667 NA Intergenic Intergenic -10159 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 226-7 chr16 80161864 80162514 + 0.666667 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) 366940 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 166.833-16 chr14 68861505 68861992 + 0.666667 NA Intergenic Intergenic -65505 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 210.5-18 chr17 55807473 55808128 + 0.666667 NA intron (NM_001330378, intron 5 of 5) intron (NM_001330378, intron 5 of 5) 56695 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 224-9 chr12 16161956 16162414 + 0.666667 NA Intergenic MLT1H|LTR|ERVL-MaLR 115500 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 275.333-10 chr15 24584367 24584886 + 0.666667 NA intron (NR_026646, intron 8 of 8) MLT1F2|LTR|ERVL-MaLR 26469 NR_026646 791114 Hs.720900 NR_026646 ENSG00000259905 PWRN1 NCRNA00198 Prader-Willi region non-protein coding RNA 1 ncRNA 155.833-31 chr2 180169276 180169509 + 0.666667 NA Intergenic THE1D-int|LTR|ERVL-MaLR -162095 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 158.833 chr1 99325424 99325860 + 0.666667 NA Intergenic Intergenic 61350 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 121.833-12 chr12 6907331 6907806 + 0.666667 NA intron (NM_001135217, intron 5 of 7) intron (NM_001135217, intron 5 of 7) 2746 NM_201650 10233 Hs.155586 NM_006992 ENSG00000010626 LRRC23 LRPB7 leucine rich repeat containing 23 protein-coding 116-56 chr20 59327715 59328046 + 0.666667 NA Intergenic MIRb|SINE|MIR 27269 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 217.667-30 chr3 182837761 182838182 + 0.666667 NA intron (NM_014616, intron 7 of 29) intron (NM_014616, intron 7 of 29) 44467 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 142.5-37 chr2 64013557 64013859 + 0.666667 NA intron (NM_001005739, intron 1 of 22) (AT)n|Simple_repeat|Simple_repeat 5720 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 113.333-31 chr12 121978649 121978946 + 0.666667 NA intron (NM_144668, intron 19 of 21) L1ME4a|LINE|L1 -43087 NM_001024808 605 Hs.530970 NM_020993 ENSG00000110987 BCL7A BCL7 BAF chromatin remodeling complex subunit BCL7A protein-coding 144.833-6 chr1 186734348 186734644 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger 53842 NR_125801 103752588 Hs.441636 NR_125801 ENSG00000273129 PACERR PACER|PTGS2-AS1|PTGS2AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 182.333-12 chr11 100511559 100511917 + 0.666667 NA Intergenic MLT2B1|LTR|ERVL -175550 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 200.333-34 chr6 120410939 120411422 + 0.666667 NA Intergenic Intergenic 396001 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 162.833-41 chr6 6245322 6245642 + 0.666667 NA intron (NM_000129, intron 6 of 14) AluSp|SINE|Alu 75209 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 202-26 chr3 60511932 60512365 + 0.666667 NA intron (NM_001320900, intron 6 of 9) L1MC4|LINE|L1 105722 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 180.667-73 chr8 63089957 63090441 + 0.666667 NA Intergenic LTR37A|LTR|ERV1 -4146 NM_000370 7274 Hs.69049 NM_000370 ENSG00000137561 TTPA ATTP|AVED|TTP1|alphaTTP alpha tocopherol transfer protein protein-coding 129.167-61 chr5 81479480 81479726 + 0.666667 NA intron (NM_001256733, intron 5 of 15) intron (NM_001256733, intron 5 of 15) -85469 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 171-46 chr5 111315701 111316032 + 0.666667 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 91482 NM_001323377 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 135.333-27 chr16 58118978 58119267 + 0.666667 NA intron (NM_013242, intron 1 of 5) MamRep605|LTR?|LTR? 10259 NM_013242 29105 Hs.532755 NM_013242 ENSG00000070761 CFAP20 BUG22|C16orf80|EVORF|GTL3|fSAP23 cilia and flagella associated protein 20 protein-coding 195-17 chr2 66711348 66711922 + 0.666667 NA Intergenic Intergenic -8408 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 120.667-15 chr10 113116009 113116334 + 0.666667 NA intron (NM_001146283, intron 5 of 12) intron (NM_001146283, intron 5 of 12) -10462 NM_001349871 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 202-43 chr8 74881369 74881835 + 0.666667 NA Intergenic MamRTE1|LINE|RTE-BovB 57068 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 206.667-49 chr8 121688793 121689416 + 0.666667 NA Intergenic L1PB4|LINE|L1 -47664 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 250.667-10 chr6 164840640 164841278 + 0.666667 NA Intergenic Intergenic -18896 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 145.333-9 chr10 20696751 20696997 + 0.666667 NA Intergenic Intergenic 144904 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 181-14 chr12 12992534 12992896 + 0.666667 NA intron (NM_015987, intron 1 of 3) intron (NM_015987, intron 1 of 3) 7550 NM_015987 50865 Hs.642618 NM_015987 ENSG00000013583 HEBP1 HBP|HEBP heme binding protein 1 protein-coding 116-54 chr2 199535310 199535604 + 0.666667 NA Intergenic Intergenic -64191 NM_015265 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 152.333-40 chr3 6360713 6361109 + 0.666667 NA Intergenic Intergenic 444538 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 194.5-22 chr20 55270812 55271159 + 0.666667 NA Intergenic LTR33|LTR|ERVL -152058 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 164.333-64 chr6 40216787 40217109 + 0.666667 NA Intergenic Intergenic 139058 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 143.167-34 chr2 60542160 60542409 + 0.666667 NA intron (NM_138559, intron 2 of 4) intron (NM_138559, intron 2 of 4) 11214 NM_001363864 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 163.833-5 chr1 186878846 186879176 + 0.666667 NA intron (NM_024420, intron 3 of 17) intron (NM_024420, intron 3 of 17) 50062 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 186.5-59 chr6 94258534 94258836 + 0.666667 NA Intergenic Intergenic 540382 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 143.833-14 chr17 60250653 60251082 + 0.666667 NA intron (NM_032582, intron 11 of 33) intron (NM_032582, intron 11 of 33) -19222 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 195.833-35 chr9 114572055 114572425 + 0.666667 NA Intergenic AluSx1|SINE|Alu -15529 NM_004888 9550 Hs.388654 NM_004888 ENSG00000136888 ATP6V1G1 ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10 ATPase H+ transporting V1 subunit G1 protein-coding 142.833-76 chr9 126151526 126151849 + 0.666667 NA Intergenic Intergenic 124228 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 118.167-67 chr8 139117178 139117454 + 0.666667 NA Intergenic Intergenic -203275 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 117.333-61 chr21 14639085 14639381 + 0.666667 NA intron (NM_001256579, intron 1 of 6) MSTD|LTR|ERVL-MaLR 3874 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 122.5-43 chr19 46146246 46146465 + 0.666667 NA Intergenic L1MD2|LINE|L1 -1427 NM_001002915 147920 Hs.99376 NM_001002915 ENSG00000204866 IGFL2 UNQ645|VPRI645 IGF like family member 2 protein-coding 191-25 chr2 12179671 12180139 + 0.666667 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) -19225 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 128.5-50 chr22 49521294 49521671 + 0.666667 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) 21984 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 130.833-74 chr8 121170253 121170575 + 0.666667 NA Intergenic L2a|LINE|L2 -358368 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 197.667-51 chr7 42950859 42951357 + 0.666667 NA Intergenic ERV24B_Prim-int|LTR|ERV1 18732 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 182.333-72 chr8 77684806 77685291 + 0.666667 NA Intergenic L1MCa|LINE|L1 234351 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 250.333-20 chr7 78357044 78357456 + 0.666667 NA intron (NR_003680, intron 5 of 5) MIRb|SINE|MIR 10008 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 205.333-37 chr3 77370036 77370587 + 0.666667 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 272299 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 162.833-19 chr19 49731873 49732190 + 0.666667 NA Intergenic AluSq2|SINE|Alu 31275 NM_021733 60385 Hs.515858 NM_021733 ENSG00000126467 TSKS PPP1R161|STK22S1|TSKS1|TSSKS testis specific serine kinase substrate protein-coding 114.333-36 chr14 37498542 37498981 + 0.666667 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 96488 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 184.167-21 chr14 105189218 105189551 + 0.666667 NA Intergenic L1MB3|LINE|L1 -8061 NM_001318380 256281 Hs.526432 NM_177533 ENSG00000183828 NUDT14 UGPP|UGPPase nudix hydrolase 14 protein-coding 118-60 chr2 187841128 187841381 + 0.666667 NA Intergenic Intergenic -286749 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 235.334-3 chr2 213265418 213266001 + 0.666667 NA Intergenic MER87B|LTR|ERV1 18500 NR_161186 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 193.333-35 chr20 46981656 46982117 + 0.666667 NA intron (NM_172110, intron 1 of 13) L1MEg|LINE|L1 87043 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 189.667-8 chr11 29011060 29011495 + 0.666667 NA Intergenic L1MA4|LINE|L1 -533729 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 318-11 chr9 31433190 31434025 + 0.666667 NA Intergenic L2a|LINE|L2 -52117 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 126.5-40 chr2 49311711 49312077 + 0.666667 NA Intergenic Intergenic -157367 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 137-74 chr4 62188100 62188563 + 0.666667 NA Intergenic L1PA15|LINE|L1 -26566 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 165-52 chr6 61247639 61247924 + 0.666667 NA Intergenic L1PA11|LINE|L1 -326349 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 135.667-98 chr6 56322551 56323061 + 0.666667 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 71322 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 148.5-45 chr3 970828 971241 + 0.666667 NA Intergenic Intergenic -121990 NM_001349361 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 142.667-16 chr11 69865667 69865922 + 0.666667 NA Intergenic Intergenic -46378 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 119.167-46 chr2 123146003 123146448 + 0.666667 NA Intergenic MamRep1527|LTR|LTR -72744 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 145.667-38 chr15 99462729 99462980 + 0.666667 NA Intergenic L1MD1|LINE|L1 -102563 NM_001352617 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 148-62 chr4 186089752 186090187 + 0.666667 NA Intergenic LTR8|LTR|ERV1 -14735 NM_001367768 25854 Hs.744961 NM_015398 ENSG00000109794 FAM149A MST119|MSTP119 family with sequence similarity 149 member A protein-coding 156-13 chr11 31186597 31187386 + 0.666667 NA intron (NM_001367979, intron 9 of 38) LTR16D|LTR|ERVL 182748 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 115.5-59 chr22 32242908 32243245 + 0.666667 NA intron (NM_014227, intron 5 of 14) L1MC4|LINE|L1 12271 NM_014227 6527 Hs.130101 NM_014227 ENSG00000100191 SLC5A4 DJ90G24.4|SAAT1|SGLT3 solute carrier family 5 member 4 protein-coding 187.667-16 chr13 83852320 83852926 + 0.666667 NA Intergenic Intergenic 29770 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 113.167-9 chr10 76150882 76151256 + 0.666667 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 368308 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 156.667-54 chr2 135769806 135770145 + 0.666667 NA intron (NM_014607, intron 7 of 12) intron (NM_014607, intron 7 of 12) -27331 NR_163478 107985946 Hs.591242 NM_001365239 LOC107985946 - uncharacterized LOC107985946 ncRNA 137-45 chr18 13233255 13233524 + 0.666667 NA intron (NM_181482, intron 1 of 5) intron (NM_181482, intron 1 of 5) -6154 NR_146617 147276 Hs.675872 NR_146617 ENSG00000279020 C18orf15 HsT3231 chromosome 18 open reading frame 15 (putative) ncRNA 246.167-26 chr6 95606079 95606629 + 0.666667 NA exon (NM_024641, exon 5 of 5) exon (NM_024641, exon 5 of 5) 28819 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 254.333-14 chr5 104832035 104832541 + 0.666667 NA Intergenic Intergenic -267186 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 240.333-28 chr8 74875541 74876076 + 0.666667 NA Intergenic Intergenic 51274 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 173.667-51 chr4 166320457 166320841 + 0.666667 NA Intergenic L1MB7|LINE|L1 447412 NM_001204760 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 218-11 chr14 65998246 65998706 + 0.666667 NA Intergenic Intergenic -487895 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 228-25 chr4 91126043 91126480 + 0.666667 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 891230 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 208.333-10 chr11 106766016 106766600 + 0.666667 NA intron (NM_001256424, intron 6 of 8) intron (NM_001256424, intron 6 of 8) 252168 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 165.333-62 chr7 77827756 77828233 + 0.666667 NA intron (NM_001366088, intron 1 of 11) intron (NM_001366088, intron 1 of 11) -12134 NM_001127357 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 116.667-73 chr3 48366727 48367078 + 0.666667 NA Intergenic AluSg7|SINE|Alu -5317 NM_001159927 285231 Hs.288793 NM_207102 ENSG00000164049 FBXW12 FBW12|FBXO12|FBXO35 F-box and WD repeat domain containing 12 protein-coding 141.5-89 chrUn_GL000216v2 69922 70451 + 0.666667 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 139.667-99 chr9 94745460 94745790 + 0.666667 NA intron (NM_001193331, intron 1 of 7) L1MA3|LINE|L1 -14024 NM_001193329 84909 Hs.434253 NM_032823 ENSG00000148120 AOPEP AP-O|APO|C90RF3|C9orf3|ONPEP aminopeptidase O (putative) protein-coding 135.667-39 chr16 13106761 13107175 + 0.666667 NA intron (NM_001145204, intron 2 of 4) (TC)n|Simple_repeat|Simple_repeat 205370 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 142-48 chr2 133227860 133228191 + 0.666667 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -38170 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 169.667-55 chr4 106262683 106263091 + 0.666667 NA intron (NM_001290768, intron 3 of 26) intron (NM_001290768, intron 3 of 26) -52723 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 206.667-27 chr20 54580356 54580773 + 0.666667 NA intron (NM_018431, intron 2 of 7) L1PA7|LINE|L1 104971 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 175.667-41 chr3 27930326 27930916 + 0.666667 NA Intergenic MER20|DNA|hAT-Charlie -96485 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 114.167-21 chr12 24599205 24599490 + 0.666667 NA Intergenic Intergenic -15179 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 192.5-6 chr10 116524671 116525117 + 0.666667 NA Intergenic Intergenic -21037 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 161-21 chr16 11241193 11241515 + 0.666667 NA Intergenic AluJb|SINE|Alu 14828 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 235.167-11 chr2 154157981 154158431 + 0.666667 NA intron (NM_052917, intron 4 of 12) L2a|LINE|L2 213812 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 187.667-26 chr2 27741752 27742207 + 0.666667 NA Intergenic Intergenic 25856 NR_160725 105374378 NR_160725 LOC105374378 - uncharacterized LOC105374378 ncRNA 178.167-13 chr14 72858490 72858825 + 0.666667 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 33992 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 162-24 chr15 97984959 97985403 + 0.666667 NA Intergenic Intergenic -17857 NR_146564 105371008 NR_146563 LINC02251 - long intergenic non-protein coding RNA 2251 ncRNA 269.667-3 chr1 85488247 85488977 + 0.666667 NA intron (NM_001134445, intron 2 of 6) L1ME4b|LINE|L1 -23453 NM_012137 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 130.667-3 chr1 72084881 72085227 + 0.666667 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 197485 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 288-9 chr3 90346830 90347523 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 1239555 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 124.167-54 chr20 36497908 36498246 + 0.666667 NA intron (NM_001042486, intron 2 of 6) intron (NM_001042486, intron 2 of 6) 36282 NM_183006 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 139.833-57 chr4 56440123 56440475 + 0.666667 NA intron (NM_001079525, intron 1 of 9) intron (NM_001079525, intron 1 of 9) 4039 NM_001079525 10606 Hs.518774 NM_006452 ENSG00000128050 PAICS ADE2|ADE2H1|AIRC|PAIS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase protein-coding 241.667-32 chr5 61386968 61387553 + 0.666667 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 55002 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 268.333-8 chr2 155841201 155841816 + 0.666667 NA Intergenic MIRb|SINE|MIR 413423 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 135.333-18 chr12 22684418 22684802 + 0.666667 NA intron (NM_018638, intron 7 of 7) intron (NM_018638, intron 7 of 7) 59439 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 184.333-6 chr12 42182503 42182807 + 0.666667 NA intron (NR_135139, intron 4 of 6) Charlie25|DNA|hAT-Charlie -37781 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 178.667-65 chr7 86157582 86157887 + 0.666667 NA Intergenic AluJr4|SINE|Alu -486175 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 166.333-79 chr8 54146347 54146760 + 0.666667 NA intron (NM_014175, intron 4 of 4) intron (NM_014175, intron 4 of 4) 11312 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 119-105 chrX 66311056 66311279 + 0.666667 NA Intergenic Intergenic 143417 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 139.833-42 chr2 95370868 95371124 + 0.666667 NA intron (NM_001034914, intron 1 of 7) AluSz|SINE|Alu 24338 NM_001034914 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 129-40 chr2 23293432 23293795 + 0.666667 NA Intergenic Intergenic -91566 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 182.333-73 chr8 77979938 77980405 + 0.666667 NA Intergenic Intergenic 529474 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 228 chr1 68706810 68707364 + 0.666667 NA Intergenic Intergenic -210005 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 193.5-45 chr5 44190701 44191202 + 0.666667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -197781 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 151.667-31 chr18 53157000 53157401 + 0.666667 NA intron (NM_005215, intron 7 of 28) intron (NM_005215, intron 7 of 28) -79901 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 214.667-19 chr2 77824691 77825123 + 0.666667 NA intron (NR_110288, intron 3 of 3) L1MA2|LINE|L1 -91027 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 170.834-10 chr8 33961149 33961933 + 0.666667 NA Intergenic L1PA4|LINE|L1 -361435 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 170.167-35 chr21 30456978 30457683 + 0.666667 NA Intergenic Intergenic 17051 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 158.5-39 chr2 95184827 95185372 + 0.666667 NA TTS (NM_001291605) TTS (NM_001291605) 19290 NM_001291604 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 169.333-7 chr10 33255502 33255901 + 0.666667 NA intron (NM_001244973, intron 5 of 16) AluJr|SINE|Alu 78966 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 184-46 chr5 40257452 40258109 + 0.666667 NA Intergenic Intergenic 205489 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 118.833-53 chr3 58376823 58377020 + 0.666667 NA intron (NR_146193, intron 2 of 16) AluSz6|SINE|Alu 43615 NM_001349498 54899 Hs.190544 NM_017771 ENSG00000168297 PXK MONAKA|SLOB PX domain containing serine/threonine kinase like protein-coding 208-15 chr16 58313225 58313839 + 0.666667 NA Intergenic MER4B-int|LTR|ERV1 -18485 NM_001080492 221191 Hs.411239 NM_001080492 ENSG00000103023 PRSS54 CT67|KLKBL4 serine protease 54 protein-coding 132.667-28 chr14 27143458 27143745 + 0.666667 NA Intergenic Intergenic 234959 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 121.5-76 chr4 104982321 104982518 + 0.666667 NA Intergenic L1M1|LINE|L1 -163456 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 118.333-27 chr12 70113286 70113496 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -129639 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 210-31 chr7 26300150 26300556 + 0.666667 NA intron (NM_001318199, intron 1 of 6) FLAM_C|SINE|Alu 7322 NM_001318199 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 126.167-80 chr6 140221888 140222446 + 0.666667 NA Intergenic Intergenic 16915 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 140.833-10 chr11 11787558 11787851 + 0.666667 NA Intergenic MIRb|SINE|MIR -4482 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 183.333-45 chr4 130138711 130139102 + 0.666667 NA Intergenic L1MEg|LINE|L1 -237455 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 148.5-23 chr14 82453946 82454222 + 0.666667 NA Intergenic Intergenic -188548 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 196.333-56 chr8 114322619 114322956 + 0.666667 NA Intergenic Intergenic -885848 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 114.333-69 chr2 102042740 102043062 + 0.666667 NA Intergenic Intergenic -27489 NM_001288706 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 115-40 chr2 156681278 156681527 + 0.666667 NA Intergenic Intergenic 245023 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 193.333-47 chr5 163892689 163893121 + 0.666667 NA Intergenic MER4B|LTR|ERV1 387286 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 170.333-28 chr15 70879258 70879551 + 0.666667 NA intron (NM_001284357, intron 2 of 16) L1ME1|LINE|L1 13029 NM_020147 56906 Hs.591123 NM_020147 ENSG00000129028 THAP10 - THAP domain containing 10 protein-coding 118.5-38 chr16 79736606 79736805 + 0.666667 NA intron (NR_104663, intron 5 of 5) intron (NR_104663, intron 5 of 5) -33766 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 187.833-27 chr5 18896726 18897118 + 0.666667 NA Intergenic Intergenic 989350 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 217.667-27 chr3 13593903 13594386 + 0.666667 NA intron (NM_001004019, intron 2 of 17) ORSL-2a|DNA|hAT-Tip100 -24237 NR_132775 106635526 NR_132775 SNORA93 - small nucleolar RNA, H/ACA box 93 snoRNA 150.5-49 chr3 31301515 31302025 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR -139983 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 150.667-95 chr8 137677308 137677743 + 0.666667 NA Intergenic Intergenic -263937 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 228.667-33 chr6 51090648 51091085 + 0.666667 NA Intergenic L1MEg|LINE|L1 271995 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 156-68 chr5 59239784 59240173 + 0.666667 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 36137 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 175-45 chr5 35242198 35242717 + 0.666667 NA Intergenic Intergenic -11970 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 219.5-17 chr18 42315529 42316034 + 0.666667 NA intron (NR_046457, intron 4 of 6) L1MDa|LINE|L1 129113 NR_046174 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 122.333-50 chr2 59810552 59810847 + 0.666667 NA Intergenic Intergenic 572337 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 163.333-75 chr8 72942586 72942951 + 0.666667 NA Intergenic Intergenic -66096 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 117.833-73 chr7 26642068 26642405 + 0.666667 NA intron (NR_161202, intron 3 of 3) MIR|SINE|MIR 4365 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 188-41 chr4 93659489 93659960 + 0.666667 NA intron (NM_001286838, intron 13 of 14) intron (NM_001286838, intron 13 of 14) -169029 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 230.667-25 chr5 157935110 157935685 + 0.666667 NA Intergenic AluSg|SINE|Alu -76252 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 308-11 chr8 129764551 129765423 + 0.666667 NA intron (NM_031415, intron 4 of 13) intron (NM_031415, intron 4 of 13) 21637 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 167.167-46 chr4 188945719 188946188 + 0.666667 NA Intergenic L1PREC2|LINE|L1 169296 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 171.333-5 chr1 108017034 108017372 + 0.666667 NA Intergenic L1MB7|LINE|L1 -52023 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 117.667-52 chr17 59117897 59118295 + 0.666667 NA intron (NM_001100595, intron 2 of 2) AluSq2|SINE|Alu -11216 NM_001353083 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 139.333-11 chr10 82281565 82281998 + 0.666667 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -48861 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 159.333-29 chr16 25112985 25113413 + 0.666667 NA intron (NM_001032391, intron 1 of 8) intron (NM_001032391, intron 1 of 8) 1457 NM_016309 51451 Hs.337730 NM_016309 ENSG00000205629 LCMT1 CGI-68|LCMT|PPMT1 leucine carboxyl methyltransferase 1 protein-coding 131.333-67 chr3 32508595 32508835 + 0.666667 NA Intergenic LTR37B|LTR|ERV1 -2326 NR_106753 102465247 NR_106753 ENSG00000276147 MIR548AY hsa-mir-548ay microRNA 548ay ncRNA 160.333-31 chr2 149575277 149575799 + 0.666667 NA intron (NM_015702, intron 6 of 7) intron (NM_015702, intron 6 of 7) -11820 NR_110240 101929231 Hs.5324 NR_110240 ENSG00000231969 LOC101929231 - uncharacterized LOC101929231 ncRNA 135.667-34 chr14 57863536 57863782 + 0.666667 NA intron (NM_001352012, intron 1 of 8) intron (NM_001352012, intron 1 of 8) 1340 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 164.333-20 chr13 65375189 65375657 + 0.666667 NA Intergenic Intergenic -490624 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 115.833-62 chr6 54948068 54948492 + 0.666667 NA Intergenic Intergenic 101509 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 206.5-26 chr6 25199528 25200134 + 0.666667 NA Intergenic HAL1ME|LINE|L1 -61439 NR_027626 8418 Hs.484918 NR_002174 ENSG00000168405 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 130.167-35 chr2 234910383 234910745 + 0.666667 NA Intergenic Intergenic -41453 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 178.667-5 chr10 97890417 97890723 + 0.666667 NA intron (NM_001206528, intron 11 of 14) intron (NM_001206528, intron 11 of 14) -14673 NR_162124 113839520 NR_162124 MIR3085 - microRNA 3085 ncRNA 197.333-18 chr14 91993896 91994385 + 0.666667 NA intron (NM_004239, intron 14 of 20) intron (NM_004239, intron 14 of 20) 45919 NM_001321851 9321 Hs.632339 NM_004239 ENSG00000100815 TRIP11 ACG1A|CEV14|GMAP-210|GMAP210|ODCD|TRIP-11|TRIP230 thyroid hormone receptor interactor 11 protein-coding 161.333-10 chr11 6061081 6061570 + 0.666667 NA Intergenic L2b|LINE|L2 -33584 NM_001001917 120796 Hs.553543 NM_001001917 ENSG00000180934 OR56A1 OR11-75 olfactory receptor family 56 subfamily A member 1 protein-coding 204.5-9 chr11 90511940 90512625 + 0.666667 NA intron (NR_104190, intron 1 of 6) MER9a3|LTR|ERVK 43575 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 138-88 chr5 106422164 106422492 + 0.666667 NA Intergenic L1MA8|LINE|L1 588686 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 130.5-34 chr17 29984668 29984950 + 0.666667 NA intron (NR_026738, intron 4 of 15) intron (NR_026738, intron 4 of 15) 43175 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 152.833-21 chr17 73155098 73155549 + 0.666667 NA Intergenic Intergenic -9687 NM_001050 6752 Hs.514451 NM_001050 ENSG00000180616 SSTR2 - somatostatin receptor 2 protein-coding 123.167-52 chr2 124421392 124421675 + 0.666667 NA intron (NM_130773, intron 4 of 23) L2c|LINE|L2 396246 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 130.667-17 chr12 28325683 28325972 + 0.666667 NA intron (NM_001352084, intron 6 of 11) intron (NM_001352084, intron 6 of 11) -135089 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 126-31 chr15 69534263 69534582 + 0.666667 NA Intergenic Intergenic -27298 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 192.167-30 chr3 137632450 137632819 + 0.666667 NA Intergenic Intergenic -131681 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 114.5-91 chr8 75964248 75964564 + 0.666667 NA Intergenic Intergenic 424438 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 123.333-105 chr8 24223204 24223430 + 0.666667 NA Intergenic MADE1|DNA|TcMar-Mariner -70723 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 126.333-91 chr6 95305879 95306217 + 0.666667 NA Intergenic L1MEi|LINE|L1 271403 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 163.167-2 chr1 221185134 221185496 + 0.666667 NA Intergenic L1ME3G|LINE|L1 150981 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 149.167-28 chr2 17138036 17138336 + 0.666667 NA Intergenic Intergenic 380254 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 232.833-16 chr5 39044841 39045348 + 0.666667 NA intron (NM_001285439, intron 2 of 38) intron (NM_001285439, intron 2 of 38) 29305 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 120.334 chr1 92247290 92247813 + 0.666667 NA intron (NR_135089, intron 16 of 17) intron (NR_135089, intron 16 of 17) 29636 NM_001012425 388649 Hs.558823 NM_001012425 ENSG00000203910 C1orf146 - chromosome 1 open reading frame 146 protein-coding 129.833-30 chr18 3968083 3968374 + 0.666667 NA intron (NR_102696, intron 1 of 4) L2|LINE|L2 5875 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 157.667-58 chr5 71935238 71935604 + 0.666667 NA Intergenic L1MEf|LINE|L1 -172054 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 162.333-51 chr4 73712185 73712524 + 0.666667 NA Intergenic L2a|LINE|L2 -28215 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 113.333-29 chr12 48888007 48888208 + 0.666667 NA Intergenic MER44B|DNA|TcMar-Tigger -16026 NM_033124 85478 Hs.512805 NM_033124 ENSG00000139537 CCDC65 CFAP250|DRC2|FAP250|NYD-SP28 coiled-coil domain containing 65 protein-coding 254.833-9 chr5 155865970 155866448 + 0.666667 NA Intergenic Charlie1a|DNA|hAT-Charlie -460548 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 134.333-103 chr8 125678079 125678332 + 0.666667 NA Intergenic Charlie7|DNA|hAT-Charlie 245996 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 167.5-33 chr2 73652412 73652882 + 0.666667 NA intron (NR_003683, intron 1 of 6) intron (NR_003683, intron 1 of 6) 7728 NR_003683 200420 Hs.739204 NM_145300 ENSG00000163016 ALMS1P1 ALMS1L|ALMS1P ALMS1 pseudogene 1 pseudo 192.333-51 chr7 94548095 94548387 + 0.666667 NA intron (NM_001363428, intron 13 of 17) intron (NM_001363428, intron 13 of 17) 38432 NM_001363426 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 129-51 chr3 5860976 5861208 + 0.666667 NA Intergenic Intergenic -610837 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 151-51 chr4 44647323 44647747 + 0.666667 NA intron (NM_182592, intron 2 of 5) intron (NM_182592, intron 2 of 5) 4106 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 139-76 chr8 24520759 24521055 + 0.666667 NA intron (NR_125808, intron 1 of 5) intron (NR_125808, intron 1 of 5) -6039 NR_125809 101929315 Hs.125562 NR_125809 ENSG00000253643 LOC101929315 - uncharacterized LOC101929315 ncRNA 147-20 chr14 73722338 73722676 + 0.666667 NA intron (NM_001367710, intron 10 of 12) intron (NM_001367710, intron 10 of 12) -8123 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 PNMA family member 1 protein-coding 138.667-74 chr5 15174074 15174532 + 0.666667 NA Intergenic L1M1|LINE|L1 92257 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 152.5-63 chr7 108361832 108362140 + 0.666667 NA intron (NM_001371131, intron 2 of 33) L1MC3|LINE|L1 -33460 NM_001371178 158.833-61 chr7 50033658 50033964 + 0.666667 NA intron (NM_001159878, intron 4 of 7) AluSx|SINE|Alu 59435 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 262.667-9 chr14 21834014 21834473 + 0.666667 NA Intergenic HERVL40-int|LTR|ERVL -163226 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 216.5-11 chr18 6276440 6276927 + 0.666667 NA intron (NM_001365769, intron 4 of 16) L2a|LINE|L2 19939 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 151-58 chr4 133907545 133907899 + 0.666667 NA Intergenic L1PBa|LINE|L1 294067 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 156.5-75 chr6 120108343 120108678 + 0.666667 NA Intergenic MLT1K|LTR|ERVL-MaLR 93331 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 148.167-71 chr6 33926173 33926540 + 0.666667 NA Intergenic Intergenic 27221 NR_106982 102466816 NR_106982 ENSG00000276824 MIR7159 hsa-mir-7159 microRNA 7159 ncRNA 131.5-38 chr2 162465347 162465589 + 0.666667 NA intron (NM_033272, intron 6 of 15) intron (NM_033272, intron 6 of 15) 121100 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 150-2 chr1 74779868 74780273 + 0.666667 NA Intergenic L1MB7|LINE|L1 -46662 NM_001134759 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 136.667-93 chr7 32875742 32876037 + 0.666667 NA intron (NM_015483, intron 2 of 3) L1MB8|LINE|L1 15871 NM_015483 25948 Hs.372541 NM_015483 ENSG00000170852 KBTBD2 BKLHD1 kelch repeat and BTB domain containing 2 protein-coding 130-28 chr12 95368112 95368441 + 0.666667 NA Intergenic Intergenic 58353 NR_037456 100500802 NR_037456 ENSG00000265917 MIR3685 - microRNA 3685 ncRNA 134.167-34 chr19 36196273 36196513 + 0.666667 NA intron (NM_001366190, intron 1 of 3) intron (NM_001366190, intron 1 of 3) 17186 NM_001366189 147929 Hs.596338 NM_152477 ENSG00000196357 ZNF565 - zinc finger protein 565 protein-coding 145-48 chr2 187206624 187207270 + 0.666667 NA Intergenic Intergenic 241305 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 171.667-77 chr7 30458391 30458873 + 0.666667 NA intron (NM_006092, intron 3 of 13) intron (NM_006092, intron 3 of 13) 20152 NM_006092 10392 Hs.405153 NM_006092 ENSG00000106100 NOD1 CARD4|CLR7.1|NLRC1 nucleotide binding oligomerization domain containing 1 protein-coding 126.167-34 chr17 61663819 61664210 + 0.666667 NA Intergenic Intergenic -72795 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 218.167-11 chr16 74069082 74069610 + 0.666667 NA Intergenic Intergenic 146175 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 139.667-82 chr6 136987322 136987670 + 0.666667 NA intron (NR_027994, intron 2 of 2) Tigger15a|DNA|TcMar-Tigger 5735 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 229.167-37 chr8 137778798 137779317 + 0.666667 NA Intergenic Intergenic 304488 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 140.333-6 chr10 11822358 11822619 + 0.666667 NA promoter-TSS (NM_153256) promoter-TSS (NM_153256) -868 NM_153256 254427 Hs.435775 NM_153256 ENSG00000148426 PROSER2 C10orf47 proline and serine rich 2 protein-coding 119.833-96 chrX 39793763 39794130 + 0.666667 NA Intergenic LTR67B|LTR|ERVL -43615 NR_039763 100616251 NR_039763 ENSG00000263972 MIR1587 - microRNA 1587 ncRNA 141.333-46 chr2 23810629 23810890 + 0.666667 NA intron (NM_017552, intron 17 of 27) AluSq|SINE|Alu 116364 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 187.333-8 chr10 31432811 31433154 + 0.666667 NA intron (NM_001323646, intron 4 of 11) Charlie1a|DNA|hAT-Charlie -33227 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 141.667-53 chr20 32035404 32035751 + 0.666667 NA Intergenic MIRc|SINE|MIR -16665 NM_002110 3055 Hs.655210 NM_002110 ENSG00000101336 HCK JTK9|p59Hck|p61Hck HCK proto-oncogene, Src family tyrosine kinase protein-coding 144.833-8 chr10 16265760 16266063 + 0.666667 NA Intergenic Intergenic -171032 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 118-92 chr5 43417845 43418112 + 0.666667 NA Intergenic AluSz|SINE|Alu -5587 NM_001301873 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 241.833-19 chr8 133665837 133666482 + 0.666667 NA intron (NR_134462, intron 1 of 2) intron (NR_134462, intron 1 of 2) 17907 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 117.333 chr1 12420321 12420657 + 0.666667 NA intron (NM_015378, intron 65 of 69) intron (NM_015378, intron 65 of 69) -86757 NR_003025 677885 Hs.658450 NR_003025 ENSG00000239149 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 201.167-2 chr1 190825686 190826036 + 0.666667 NA Intergenic L1MC3|LINE|L1 200971 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 130.333-29 chr13 73717779 73718131 + 0.666667 NA intron (NM_007249, intron 6 of 7) intron (NM_007249, intron 6 of 7) 153711 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 128.833-24 chr12 129502117 129502415 + 0.666667 NA intron (NM_133448, intron 3 of 8) AluY|SINE|Alu 293665 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 219.667-31 chr8 85909425 85910352 + 0.666667 NA Intergenic Intergenic -81946 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 166.667-62 chr8 81981381 81981715 + 0.666667 NA Intergenic Intergenic -139262 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 238.167-13 chr2 59656517 59657173 + 0.666667 NA Intergenic MLT1A|LTR|ERVL-MaLR 439137 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 125.333-66 chr2 111235673 111236022 + 0.666667 NA intron (NR_136166, intron 3 of 4) intron (NR_136166, intron 3 of 4) 85239 NR_039636 100616341 NR_039636 ENSG00000266139 MIR4435-2 mir-4435-2 microRNA 4435-2 ncRNA 198.167-2 chr1 237689145 237689636 + 0.666667 NA intron (NM_001035, intron 63 of 104) L1ME3|LINE|L1 -172785 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 140.5-74 chr7 139316425 139316882 + 0.666667 NA Intergenic AluSq2|SINE|Alu -23706 NM_001244585 51631 Hs.731488 NM_016019 ENSG00000146963 LUC7L2 CGI-59|CGI-74|LUC7B2 LUC7 like 2, pre-mRNA splicing factor protein-coding 178.667-71 chr8 108320245 108320696 + 0.666667 NA Intergenic L1MC5|LINE|L1 -71753 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 139.333-55 chr21 24213106 24213372 + 0.666667 NA Intergenic L1PA7|LINE|L1 108138 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 191-54 chr9 85251693 85252034 + 0.666667 NA Intergenic L2a|LINE|L2 490166 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 209.333-31 chr3 101489740 101490134 + 0.666667 NA intron (NM_020654, intron 3 of 23) AluSp|SINE|Alu 23275 NM_001077203 57337 Hs.529551 NM_020654 ENSG00000138468 SENP7 - SUMO specific peptidase 7 protein-coding 119.333-28 chr14 58348884 58349079 + 0.666667 NA intron (NM_002892, intron 15 of 23) L1MB3|LINE|L1 -46949 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 149.667-69 chr6 129996950 129997356 + 0.666667 NA Intergenic Intergenic -21216 NM_032438 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 148-13 chr10 18254316 18254644 + 0.666667 NA intron (NM_201593, intron 2 of 13) intron (NM_201593, intron 2 of 13) -6242 NM_000724 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 206.833-10 chr19 36928455 36928917 + 0.666667 NA intron (NM_001204835, intron 4 of 6) L1M5|LINE|L1 12354 NM_001204837 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 125.5-37 chr2 22484702 22485167 + 0.666667 NA Intergenic Intergenic -51545 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 243-2 chr1 174009209 174009922 + 0.666667 NA Intergenic AluSz|SINE|Alu -16493 NM_001300852 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 168-38 chr3 42065771 42066204 + 0.666667 NA Intergenic Intergenic -21213 NR_146089 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 118.5-74 chr4 60636832 60637034 + 0.666667 NA Intergenic L1PA4|LINE|L1 -285686 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 253.5-11 chr14 61828344 61829123 + 0.666667 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) 16030 NM_001367656 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 119-92 chr7 66607341 66607549 + 0.666667 NA Intergenic AluSz|SINE|Alu -15038 NR_111976 493754 Hs.732409 NR_002933 ENSG00000229180 GS1-124K5.11 - RAB guanine nucleotide exchange factor 1 pseudogene pseudo 120-3 chr1 88228331 88228558 + 0.666667 NA Intergenic Intergenic -455700 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 233.666-2 chr10 121324490 121325138 + 0.666667 NA Intergenic MER1B|DNA|hAT-Charlie 206500 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 266.667-9 chr2 135024642 135025312 + 0.666667 NA promoter-TSS (NM_025052) promoter-TSS (NM_025052) -299 NM_001018046 80122 Hs.659395 NM_025052 ENSG00000176601 MAP3K19 RCK|YSK4 mitogen-activated protein kinase kinase kinase 19 protein-coding 152.333-10 chr11 60840721 60841073 + 0.666667 NA Intergenic Intergenic -1216 NM_024098 79080 Hs.4253 NM_024098 ENSG00000110104 CCDC86 - coiled-coil domain containing 86 protein-coding 141-14 chr11 19733691 19733926 + 0.666667 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -19136 NR_015384 100126784 Hs.64341 NR_015384 LOC100126784 - uncharacterized LOC100126784 ncRNA 140-50 chr3 54089862 54090162 + 0.666667 NA Intergenic Intergenic -32540 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 154.833-46 chr4 99560081 99560632 + 0.666667 NA intron (NM_001134665, intron 1 of 7) L1MEi|LINE|L1 3367 NM_152292 93587 Hs.380412 NM_152292 ENSG00000145331 TRMT10A HEL-S-88|MSSGM|MSSGM1|RG9MTD2|TRM10 tRNA methyltransferase 10A protein-coding 117.333-113 chr8 141015576 141015832 + 0.666667 NA Intergenic MER63B|DNA|hAT-Blackjack -13625 NM_001352699 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 124.333 chr1 43574205 43574489 + 0.666667 NA intron (NM_002840, intron 6 of 33) Charlie1b|DNA|hAT-Charlie 43464 NM_002840 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 164.667-74 chr8 100780854 100781320 + 0.666667 NA Intergenic Intergenic -58999 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 148-61 chr4 172233856 172234112 + 0.666667 NA intron (NM_001034845, intron 3 of 12) L1ME3A|LINE|L1 -420377 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 189.334-3 chr6 82700455 82701012 + 0.666667 NA Intergenic Intergenic 336489 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 156.5-77 chr7 24361106 24361373 + 0.666667 NA Intergenic Intergenic 77049 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 247.667-17 chr3 14885486 14886016 + 0.666667 NA intron (NM_152536, intron 4 of 19) MLT1G3|LTR|ERVL-MaLR 61754 NR_046254 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 181.833-18 chr16 35857829 35858172 + 0.666667 NA Intergenic L1PB3|LINE|L1 111448 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 138.167-65 chr5 123958855 123959340 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 413680 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 170.667-49 chr4 142058079 142058409 + 0.666667 NA intron (NM_001331040, intron 25 of 25) intron (NM_001331040, intron 25 of 25) 421661 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 113.667-107 chr5 179919114 179919537 + 0.666667 NA Intergenic Intergenic -11428 NM_015043 23061 Hs.155829 NM_015043 ENSG00000197226 TBC1D9B GRAMD9B TBC1 domain family member 9B protein-coding 234.667-5 chr1 191273014 191273448 + 0.666667 NA Intergenic AluJr|SINE|Alu -44733 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 141.167-23 chr14 25762368 25762632 + 0.666667 NA Intergenic L1M5|LINE|L1 -712203 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 140.667-12 chr10 108885174 108885488 + 0.666667 NA Intergenic Intergenic -816038 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 141.5-17 chr12 19244392 19244721 + 0.666667 NA intron (NM_001256787, intron 1 of 25) intron (NM_001256787, intron 1 of 25) 39231 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 138-23 chr12 47665940 47666281 + 0.666667 NA intron (NM_024604, intron 16 of 16) intron (NM_024604, intron 16 of 16) 39920 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 186.5-36 chr2 52380954 52381475 + 0.666667 NA intron (NR_135239, intron 2 of 2) L1PA17|LINE|L1 10566 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 125.333-85 chr3 185865819 185866139 + 0.666667 NA Intergenic Intergenic -40937 NM_001291869 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 129-8 chr1 226042590 226042880 + 0.666667 NA Intergenic Intergenic -19981 NM_002107 3020 Hs.533624 NM_002107 ENSG00000163041 H3F3A H3.3A|H3F3 H3 histone family member 3A protein-coding 180.833-9 chr12 14520730 14521013 + 0.666667 NA intron (NM_024829, intron 6 of 10) L1MA6|LINE|L1 -46861 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 148-76 chr6 157860272 157860585 + 0.666667 NA intron (NM_016224, intron 1 of 17) intron (NM_016224, intron 1 of 17) 37182 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 233-7 chr11 77363059 77363629 + 0.666667 NA intron (NM_001128620, intron 5 of 15) intron (NM_001128620, intron 5 of 15) -61678 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 119.833-49 chr20 155019 155387 + 0.666667 NA Intergenic Intergenic -2251 NM_139074 140850 Hs.99362 NM_139074 ENSG00000088782 DEFB127 C20orf73|DEF-27|DEFB-27|DEFB27|bA530N10.2|hBD-27 defensin beta 127 protein-coding 161.667-79 chr7 79815858 79816205 + 0.666667 NA Intergenic Intergenic -318800 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 126.167-56 chr3 129251468 129251693 + 0.666667 NA intron (NM_016128, intron 2 of 23) AluSx4|SINE|Alu 1974 NM_016128 22820 Hs.518250 NM_016128 ENSG00000181789 COPG1 COPG coatomer protein complex subunit gamma 1 protein-coding 239.333-9 chr14 67732892 67733513 + 0.666667 NA intron (NM_152443, intron 8 of 8) intron (NM_152443, intron 8 of 8) 31316 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 146.333-55 chr2 161434537 161434827 + 0.666667 NA Intergenic Intergenic 18385 NM_006593 10716 Hs.210862 NM_006593 ENSG00000136535 TBR1 IDDAS|TBR-1|TES-56 T-box brain transcription factor 1 protein-coding 131.167-24 chr14 45994155 45994407 + 0.666667 NA Intergenic Intergenic -69878 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 127.333-111 chr8 57924874 57925289 + 0.666667 NA Intergenic Intergenic -53277 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 121.333-90 chr5 169951040 169951285 + 0.666667 NA intron (NM_001346304, intron 1 of 3) Charlie8|DNA|hAT-Charlie 29333 NM_001129891 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 124.833-69 chr4 73237980 73238449 + 0.666667 NA intron (NM_032217, intron 1 of 33) intron (NM_032217, intron 1 of 33) -15157 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 251-3 chr10 87891523 87891997 + 0.666667 NA intron (NM_001304717, intron 2 of 9) AluJb|SINE|Alu 28135 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 154.833-20 chr16 87456717 87457165 + 0.666667 NA intron (NM_015144, intron 2 of 12) intron (NM_015144, intron 2 of 12) 34913 NM_015144 23174 Hs.156231 NM_015144 ENSG00000140948 ZCCHC14 BDG-29|BDG29 zinc finger CCHC-type containing 14 protein-coding 255.667-8 chr14 71574044 71574815 + 0.666667 NA intron (NM_001354289, intron 5 of 23) intron (NM_001354289, intron 5 of 23) -11869 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 156.167-52 chr6 105710504 105710792 + 0.666667 NA Intergenic Intergenic -307566 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 155.667-32 chr18 72012438 72012909 + 0.666667 NA Intergenic Intergenic -230447 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 172-60 chr6 50950557 50950869 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger 131842 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 203.333-7 chr12 120106533 120107121 + 0.666667 NA intron (NM_006861, intron 2 of 5) AluSc5|SINE|Alu 9926 NM_006861 11021 Hs.524788 NM_006861 ENSG00000111737 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 119.5-42 chr17 61124395 61124614 + 0.666667 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 243200 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 216.333-10 chr11 36480817 36481439 + 0.666667 NA Intergenic Intergenic 29144 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 120-57 chr2 110909146 110909652 + 0.666667 NA intron (NM_001371254, intron 11 of 18) intron (NM_001371254, intron 11 of 18) 176826 NM_001371254 143-72 chr7 9434185 9434579 + 0.666667 NA Intergenic Intergenic -199888 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 157.833-22 chr14 38609645 38609918 + 0.666667 NA Intergenic MSTD|LTR|ERVL-MaLR -272815 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 135.833-19 chr15 48528247 48528506 + 0.666667 NA intron (NM_000138, intron 8 of 65) MIR|SINE|MIR 117412 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 113.167-56 chr4 57772269 57772511 + 0.666667 NA Intergenic L4_B_Mam|LINE|RTE-X 346518 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 180.667-76 chr8 123407895 123408199 + 0.666667 NA Intergenic Intergenic -8678 NM_001283027 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 157.333-10 chr11 72039603 72039982 + 0.666667 NA intron (NR_104476, intron 2 of 24) intron (NR_104476, intron 2 of 24) 25501 NR_104178 100128494 Hs.713607 NR_104178 ENSG00000251143 LOC100128494 - uncharacterized LOC100128494 ncRNA 208-31 chr5 72998546 72999013 + 0.666667 NA intron (NM_001146032, intron 5 of 24) intron (NM_001146032, intron 5 of 24) 42738 NM_138782 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 176.333-37 chr2 181942514 181942881 + 0.666667 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR -11544 NR_048567 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 189.5-23 chr17 65404105 65404584 + 0.666667 NA Intergenic AluJb|SINE|Alu -53197 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 193.833-37 chr7 54594390 54594979 + 0.666667 NA Intergenic L2|LINE|L2 37714 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 114.5-21 chr12 10652913 10653112 + 0.666667 NA intron (NM_018423, intron 1 of 10) MIR3|SINE|MIR 21040 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 159.667-94 chr8 117652879 117653432 + 0.666667 NA Intergenic Intergenic 132442 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 160.667-76 chr8 118265364 118265661 + 0.666667 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -153693 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 126.5-19 chr13 36343113 36343379 + 0.666667 NA intron (NM_001142296, intron 1 of 9) Charlie2b|DNA|hAT-Charlie 3148 NM_001142296 23111 Hs.440414 NM_015087 ENSG00000133104 SPART SPG20|TAHCCP1 spartin protein-coding 165.833-56 chr8 138443404 138443873 + 0.666667 NA intron (NM_001362965, intron 1 of 19) L2a|LINE|L2 53623 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 116.333-52 chr2 154722152 154722412 + 0.666667 NA intron (NM_002239, intron 2 of 2) L2b|LINE|L2 23587 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 128-50 chr2 144793018 144793360 + 0.666667 NA intron (NR_033870, intron 2 of 4) intron (NR_033870, intron 2 of 4) 125222 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 144.667-89 chr7 7447902 7448445 + 0.666667 NA intron (NM_001037763, intron 18 of 34) L1MEc|LINE|L1 87700 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 195.333-26 chr2 196722188 196722600 + 0.666667 NA intron (NM_001080539, intron 21 of 27) AluJb|SINE|Alu 8856 NM_001353340 284992 Hs.132519 NM_173466 ENSG00000144395 CCDC150 - coiled-coil domain containing 150 protein-coding 211.667-30 chr4 55558089 55558598 + 0.666667 NA intron (NM_152401, intron 5 of 5) THE1C|LTR|ERVL-MaLR -11434 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 158.833-62 chr7 115690961 115691295 + 0.666667 NA Intergenic L2b|LINE|L2 -109687 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 168.5-7 chr1 241114012 241114424 + 0.666667 NA intron (NM_001282778, intron 2 of 16) MER89|LTR|ERV1 -18054 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 113.167-51 chr3 113274559 113274946 + 0.666667 NA intron (NM_033254, intron 9 of 19) intron (NM_033254, intron 9 of 19) 62636 NM_001301861 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 175.5-53 chr6 47141819 47142129 + 0.666667 NA Intergenic LTR37A|LTR|ERV1 -99642 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 167.667-36 chr17 82610520 82610889 + 0.666667 NA Intergenic AluJb|SINE|Alu 37740 NM_019613 56270 Hs.132161 NM_019613 ENSG00000141580 WDR45B NEDSBAS|WDR45L|WIPI-3|WIPI3 WD repeat domain 45B protein-coding 124.667-111 chr6 154732440 154732669 + 0.666667 NA promoter-TSS (NM_001286189) promoter-TSS (NM_001286189) -824 NM_001286189 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 165-8 chr10 41812763 41813200 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 555064 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 173.167-22 chr20 2437417 2437694 + 0.666667 NA Intergenic AluSx|SINE|Alu 25492 NR_003684 100113378 NR_003684 SNORD119 - small nucleolar RNA, C/D box 119 snoRNA 209-21 chr17 33731605 33732042 + 0.666667 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -198063 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 152.333-12 chr12 21410489 21410921 + 0.666667 NA Intergenic L1ME3F|LINE|L1 -15268 NM_134431 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 263-6 chr12 70626554 70627183 + 0.666667 NA intron (NM_001109754, intron 2 of 33) intron (NM_001109754, intron 2 of 33) 10561 NM_001330204 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 222-29 chr5 56333494 56333901 + 0.666667 NA Intergenic L1ME3Cz|LINE|L1 -100367 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 224.167-11 chr19 27987670 27988072 + 0.666667 NA intron (NR_146733, intron 3 of 6) intron (NR_146733, intron 3 of 6) -193931 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 166.333-47 chr21 27412408 27412716 + 0.666667 NA Intergenic Intergenic -309817 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 236.667-19 chr2 156378415 156378851 + 0.666667 NA Intergenic L1PA16|LINE|L1 -36513 NR_147695 440918 Hs.641142 NR_147695 FLJ46875 - uncharacterized LOC440918 ncRNA 165-2 chr1 83811720 83812124 + 0.666667 NA intron (NR_119374, intron 2 of 2) AluSz|SINE|Alu 48624 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 156-10 chr10 53771179 53771520 + 0.666667 NA Intergenic L1MEg|LINE|L1 -714881 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 117.167-52 chr2 213517304 213517560 + 0.666667 NA intron (NR_047660, intron 9 of 14) L1PA16|LINE|L1 232968 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 181.667-59 chr6 154013015 154013376 + 0.666667 NA intron (NM_001145280, intron 1 of 3) intron (NM_001145280, intron 1 of 3) 2699 NM_001145281 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 159.5-7 chr10 76867135 76867471 + 0.666667 NA Intergenic Tigger13a|DNA|TcMar-Tigger -20741 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 197.833-11 chr18 3827508 3827954 + 0.666667 NA intron (NM_001242761, intron 4 of 11) MER112|DNA|hAT-Charlie 17627 NM_001242765 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 148-79 chr8 67672028 67672531 + 0.666667 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 74081 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 142-60 chr22 27303770 27304124 + 0.666667 NA Intergenic L2c|LINE|L2 -6704 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 180-35 chr4 35120740 35121086 + 0.666667 NA Intergenic Intergenic -851166 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 136.5-21 chr11 117861962 117862327 + 0.666667 NA intron (NM_001164836, intron 1 of 9) intron (NM_001164836, intron 1 of 9) 14514 NM_001164832 53826 Hs.744850 NM_022003 ENSG00000137726 FXYD6 - FXYD domain containing ion transport regulator 6 protein-coding 131.667-88 chr4 39435863 39436171 + 0.666667 NA intron (NM_175737, intron 2 of 4) intron (NM_175737, intron 2 of 4) 22931 NM_000661 6133 Hs.412370 NM_000661 ENSG00000163682 RPL9 L9|NPC-A-16 ribosomal protein L9 protein-coding 136-44 chr22 28789933 28790354 + 0.666667 NA TTS (NM_001284265) TTS (NM_001284265) 10429 NM_001079539 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding 146-5 chr10 19777227 19777582 + 0.666667 NA Intergenic Intergenic -39028 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 137-7 chr10 4779645 4779953 + 0.666667 NA Intergenic Intergenic -46378 NR_073127 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 155-61 chr5 20175100 20175501 + 0.666667 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -130251 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 192.167-23 chr2 106702309 106702923 + 0.666667 NA Intergenic Intergenic 183412 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 130-79 chr5 16854588 16855150 + 0.666667 NA intron (NM_012334, intron 2 of 40) AluSq2|SINE|Alu 81419 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 147.5-8 chr1 190614018 190614365 + 0.666667 NA Intergenic Intergenic -10699 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 152.667-27 chr14 39753233 39753615 + 0.666667 NA Intergenic MamGypsy2-I|LTR|Gypsy -320924 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 121.333-70 chr3 178255089 178255381 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -163966 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 149.167-18 chr14 46397123 46397356 + 0.666667 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -74120 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 159.667-5 chr1 93058774 93059222 + 0.666667 NA Intergenic Intergenic -20237 NM_001164393 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 126.167-24 chr14 69955868 69956088 + 0.666667 NA intron (NM_001034852, intron 3 of 11) intron (NM_001034852, intron 3 of 11) -22155 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 122.667-67 chr3 113811049 113811415 + 0.666667 NA 3' UTR (NM_001690, exon 15 of 15) 3' UTR (NM_001690, exon 15 of 15) -27556 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 140.667-41 chr2 41454184 41454559 + 0.666667 NA Intergenic Intergenic -423184 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 146.333-73 chr4 61362151 61362512 + 0.666667 NA intron (NM_001371342, intron 1 of 20) (AT)n|Simple_repeat|Simple_repeat 160159 NM_001371342 171.667-57 chr4 17845089 17845453 + 0.666667 NA TTS (NM_022346) TTS (NM_022346) 34292 NM_022346 64151 Hs.567567 NM_022346 ENSG00000109805 NCAPG CAPG|CHCG|NY-MEL-3|YCG1 non-SMC condensin I complex subunit G protein-coding 149.333-99 chr8 138261347 138261741 + 0.666667 NA intron (NM_015912, intron 4 of 19) L4_A_Mam|LINE|RTE-X -177999 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 144.333-25 chr13 53304997 53305281 + 0.666667 NA Intergenic MSTB|LTR|ERVL-MaLR -153239 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 207-7 chr12 11523723 11524124 + 0.666667 NA Intergenic Intergenic -24107 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 159.5-24 chr2 108816607 108816900 + 0.666667 NA intron (NM_001351559, intron 10 of 11) AluJr|SINE|Alu 29982 NR_147236 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 219.5-23 chr2 215483393 215483805 + 0.666667 NA Intergenic MER58B|DNA|hAT-Charlie 29892 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 144.5-50 chr2 192233911 192234458 + 0.666667 NA Intergenic Intergenic -39251 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 169.833-41 chr9 79823337 79823723 + 0.666667 NA promoter-TSS (NR_121213) promoter-TSS (NR_121213) -1000 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 120.667-11 chr10 17530909 17531139 + 0.666667 NA Intergenic L1ME2|LINE|L1 -76429 NR_144322 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 158.5-14 chr11 80477973 80478260 + 0.666667 NA Intergenic Intergenic 284687 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 141.667-61 chr22 35246667 35246956 + 0.666667 NA Intergenic L1MDa|LINE|L1 -10682 NR_027780 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 194-58 chr8 105627472 105628041 + 0.666667 NA intron (NM_001362837, intron 4 of 7) MLT1I|LTR|ERVL-MaLR 308213 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 197.333-7 chr11 101932518 101932890 + 0.666667 NA intron (NM_001363543, intron 2 of 11) L2a|LINE|L2 -16182 NM_178127 253935 Hs.318370 NM_178127 ENSG00000187151 ANGPTL5 - angiopoietin like 5 protein-coding 165.667 chr1 63183508 63183880 + 0.666667 NA intron (NR_038252, intron 6 of 11) intron (NR_038252, intron 6 of 11) 133563 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 128.833-42 chr2 29892986 29893235 + 0.666667 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 28476 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 143.5-51 chr22 27359971 27360384 + 0.666667 NA Intergenic L1MC1|LINE|L1 49526 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 170.333-62 chr6 54314166 54314597 + 0.666667 NA intron (NM_014464, intron 1 of 10) MLT1J|LTR|ERVL-MaLR 5940 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 172.333-32 chr18 66529982 66530405 + 0.666667 NA intron (NM_001271028, intron 8 of 9) L2a|LINE|L2 73897 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 132-25 chr14 53774340 53774716 + 0.666667 NA Intergenic Intergenic 173956 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 168.5-63 chr8 12860470 12860920 + 0.666667 NA Intergenic Intergenic -49217 NR_015383 340357 Hs.434302 NR_015383 ENSG00000254813 LOC340357 - uncharacterized LOC340357 ncRNA 161-43 chr3 179195891 179196188 + 0.666667 NA intron (NM_006218, intron 1 of 20) intron (NM_006218, intron 1 of 20) 47682 NM_006218 5290 Hs.553498 NM_006218 ENSG00000121879 PIK3CA CLAPO|CLOVE|CWS5|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha protein-coding 115.333-52 chr2 81607185 81607454 + 0.666667 NA Intergenic Intergenic -140373 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 124.333-12 chr10 61560399 61560707 + 0.666667 NA Intergenic L1MEh|LINE|L1 80512 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 119.833-55 chr3 1607441 1607697 + 0.666667 NA Intergenic L2|LINE|L2 -491234 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 122.5-37 chr15 72964593 72964932 + 0.666667 NA Intergenic Intergenic -87701 NM_002499 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 161.833-45 chrX 93635193 93635621 + 0.666667 NA Intergenic MLT2B4|LTR|ERVL 38171 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 136.333-56 chr21 29209583 29210033 + 0.666667 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 16314 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 241.167-6 chr2 141992180 141992742 + 0.666667 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 139240 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 186-37 chr4 74727598 74728022 + 0.666667 NA Intergenic Intergenic 66713 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 215.167-2 chr1 75267930 75268520 + 0.666667 NA intron (NM_001320283, intron 4 of 21) L2a|LINE|L2 133837 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 177.833-16 chr2 23104373 23104838 + 0.666667 NA Intergenic Intergenic -280574 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 194.667-43 chr3 134836472 134836928 + 0.666667 NA intron (NM_004441, intron 1 of 15) intron (NM_004441, intron 1 of 15) 41440 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 141.167-8 chr10 33748206 33748548 + 0.666667 NA Intergenic Intergenic 24303 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 126.333-37 chr15 60499096 60499631 + 0.666667 NA intron (NM_134260, intron 11 of 11) AluJr4|SINE|Alu 20185 NR_120339 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 143-46 chr3 34611821 34612172 + 0.666667 NA Intergenic Intergenic 782027 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 182-23 chr17 62004056 62004423 + 0.666667 NA intron (NM_005121, intron 9 of 29) L2a|LINE|L2 61039 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 123-53 chr2 233078541 233078857 + 0.666667 NA intron (NM_001017915, intron 1 of 26).2 AluSc|SINE|Alu 18357 NM_001017915 3635 Hs.262886 NM_005541 ENSG00000168918 INPP5D SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship inositol polyphosphate-5-phosphatase D protein-coding 187.667-8 chr11 24122422 24122781 + 0.666667 NA Intergenic MIR3|SINE|MIR -374452 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 168.333-66 chrX 146786536 146786834 + 0.666667 NA Intergenic AluSq|SINE|Alu -23086 NM_001244892 100133053 NM_001244892 ENSG00000235699 CXorf51B CXorf51A chromosome X open reading frame 51B protein-coding 152.667-59 chr3 149817224 149817579 + 0.666667 NA intron (NM_007282, intron 2 of 10) intron (NM_007282, intron 2 of 10) 4713 NM_183381 11342 Hs.12333 NM_007282 ENSG00000082996 RNF13 EIEE73|RZF ring finger protein 13 protein-coding 188.333-61 chr8 112950055 112950482 + 0.666667 NA intron (NM_001363185, intron 6 of 66) intron (NM_001363185, intron 6 of 66) 306775 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 131.167-79 chr8 27364151 27364540 + 0.666667 NA intron (NM_173175, intron 1 of 29) intron (NM_173175, intron 1 of 29) 38781 NM_173175 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 233.333-42 chr8 55777876 55778479 + 0.666667 NA intron (NM_001317902, intron 1 of 10) AluJb|SINE|Alu 4731 NM_001317902 96764 Hs.335068 NM_024831 ENSG00000137574 TGS1 NCOA6IP|PIMT|PIPMT trimethylguanosine synthase 1 protein-coding 223.667-22 chr5 1304830 1305306 + 0.666667 NA Intergenic L1MA3|LINE|L1 4309 NR_039662 100616235 NR_039662 ENSG00000263670 MIR4457 mir-4457 microRNA 4457 ncRNA 173.5-2 chr1 102257516 102257869 + 0.666667 NA Intergenic L1MC1|LINE|L1 -260458 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 166.333-59 chr4 114620200 114620594 + 0.666667 NA intron (NM_001322112, intron 2 of 6) intron (NM_001322112, intron 2 of 6) -1970 NM_003360 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 116.833-66 chr9 36726746 36727059 + 0.666667 NA Intergenic L1ME4a|LINE|L1 96697 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 151.5 chr1 43989580 43989856 + 0.666667 NA intron (NM_001005417, intron 6 of 6) MER49|LTR|ERV1 -1878 NM_001349127 149473 Hs.632394 NM_152499 ENSG00000159214 CCDC24 - coiled-coil domain containing 24 protein-coding 162.5-55 chr4 68241628 68241909 + 0.666667 NA exon (NM_182502, exon 2 of 10) exon (NM_182502, exon 2 of 10) 3926 NM_182502 132724 Hs.407122 NM_182502 ENSG00000185873 TMPRSS11B - transmembrane serine protease 11B protein-coding 115-17 chr11 26139532 26139827 + 0.666667 NA Intergenic Intergenic -49444 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 131.167-16 chr12 19529437 19529779 + 0.666667 NA Intergenic Intergenic 89009 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 134.667-109 chr8 111538735 111539141 + 0.666667 NA Intergenic THE1C-int|LTR|ERVL-MaLR 162299 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 191.667-24 chr2 161606511 161606876 + 0.666667 NA Intergenic L1MB7|LINE|L1 -17642 NM_001354450 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 270.333-7 chr8 52265026 52265675 + 0.666667 NA intron (NR_148195, intron 2 of 3) L2a|LINE|L2 -10858 NM_001352842 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 126.667-23 chr15 80088085 80088305 + 0.666667 NA intron (NM_001242912, intron 2 of 6) intron (NM_001242912, intron 2 of 6) -10221 NM_001242919 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 134.667-27 chr14 59827244 59827549 + 0.666667 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 43380 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 157.334-10 chrX 75083999 75084549 + 0.666667 NA intron (NM_001271699, intron 3 of 14) MLT1D|LTR|ERVL-MaLR 72009 NM_001271696 22 Hs.370480 NM_004299 ENSG00000131269 ABCB7 ABC7|ASAT|Atm1p|EST140535 ATP binding cassette subfamily B member 7 protein-coding 140.333-43 chr20 44043767 44044152 + 0.666667 NA intron (NM_001098797, intron 3 of 8) L1PA5|LINE|L1 98063 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 157.167-18 chr11 113044015 113044390 + 0.666667 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -80742 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 136-6 chr1 226259140 226259419 + 0.666667 NA intron (NM_001366239, intron 9 of 13) L1MC1|LINE|L1 35615 NM_001282402 83881 Hs.282079 NM_031944 ENSG00000185155 MIXL1 MILD1|MIX|MIXL Mix paired-like homeobox protein-coding 137.833-2 chr10 11540484 11540830 + 0.666667 NA intron (NM_014688, intron 2 of 14) intron (NM_014688, intron 2 of 14) -8377 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 130-3 chr1 57031205 57031738 + 0.666667 NA intron (NM_001353986, intron 9 of 14) MIRc|SINE|MIR -65331 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 192.833-22 chr21 31615060 31615686 + 0.666667 NA Intergenic AluSx1|SINE|Alu -44249 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 206.833-29 chr8 124664220 124664619 + 0.666667 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 64054 NM_001363299 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 155.5-10 chr12 40374381 40374794 + 0.666667 NA Intergenic Intergenic -18807 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 237.333-12 chr19 6871700 6872103 + 0.666667 NA Intergenic L1PA10|LINE|L1 -15678 NM_001256253 2015 Hs.2375 NM_001974 ENSG00000174837 ADGRE1 EMR1|TM7LN3 adhesion G protein-coupled receptor E1 protein-coding 173.333-57 chr5 170005016 170005490 + 0.666667 NA intron (NR_156756, intron 31 of 52) intron (NR_156756, intron 31 of 52) -23235 NR_039609 100616498 NR_039609 ENSG00000263831 MIR378E mir-378e microRNA 378e ncRNA 176.167-24 chr20 46500436 46500839 + 0.666667 NA 3' UTR (NM_001353824, exon 5 of 5) 3' UTR (NM_001353824, exon 5 of 5) 12935 NM_001353824 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 185-4 chr1 241448923 241449366 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR 70641 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 125.833-80 chr7 6325082 6325293 + 0.666667 NA Intergenic AluJo|SINE|Alu 23780 NM_001037163 84792 Hs.696146 NM_001037163 ENSG00000286075 FAM220A ACPIN1|C7orf70|SIPAR family with sequence similarity 220 member A protein-coding 119.333-120 chr9 78933944 78934218 + 0.666667 NA Intergenic L2|LINE|L2 211585 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 119-30 chr13 75178277 75178570 + 0.666667 NA Intergenic Intergenic 61958 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 114.333-100 chr5 4019195 4019426 + 0.666667 NA Intergenic UCON26|Unknown|Unknown 423478 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 204.666-4 chr8 21275494 21276073 + 0.666667 NA Intergenic Charlie8|DNA|hAT-Charlie -22456 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 193 chr1 61681592 61682107 + 0.666667 NA intron (NM_032027, intron 6 of 6) MIR3|SINE|MIR 27607 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 163-56 chr7 19564392 19564824 + 0.666667 NA Intergenic L1M4a1|LINE|L1 140828 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 234.833-19 chr5 39023783 39024269 + 0.666667 NA intron (NM_001285439, intron 2 of 38) MER1B|DNA|hAT-Charlie 50373 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 181.333-12 chr12 38415742 38416214 + 0.666667 NA Intergenic L2|LINE|L2 99204 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 195.667-16 chr17 29880514 29881111 + 0.666667 NA intron (NM_001282129, intron 1 of 15) intron (NM_001282129, intron 1 of 15) -49091 NM_001145053 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 189.5-54 chr7 42632615 42632923 + 0.666667 NA Intergenic Intergenic 73678 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 126.667-111 chr9 5867864 5868110 + 0.666667 NA Intergenic Intergenic -22902 NM_005511 2315 Hs.154069 NM_005511 ENSG00000120215 MLANA MART-1|MART1 melan-A protein-coding 155.334-6 chr5 128096185 128096984 + 0.666667 NA intron (NM_001046, intron 1 of 26) intron (NM_001046, intron 1 of 26) 12818 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 149-3 chr1 31761315 31761725 + 0.666667 NA intron (NM_001294335, intron 1 of 32) intron (NM_001294335, intron 1 of 32) 2530 NM_001364857 576 Hs.524138 NM_001294335 ENSG00000121753 ADGRB2 BAI2 adhesion G protein-coupled receptor B2 protein-coding 139.167-43 chr2 168368165 168368422 + 0.666667 NA Intergenic Intergenic -87979 NM_001256126 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 227.5-19 chr3 109721172 109721583 + 0.666667 NA Intergenic L1PB4|LINE|L1 118549 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 195.333-39 chr4 119586041 119586587 + 0.666667 NA intron (NM_033437, intron 3 of 20) intron (NM_033437, intron 3 of 20) 41423 NM_033430 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 213.833-2 chr1 215792314 215792858 + 0.666667 NA intron (NM_206933, intron 50 of 71) intron (NM_206933, intron 50 of 71) 225282 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 114-29 chr12 15973461 15973745 + 0.666667 NA intron (NM_001300779, intron 5 of 7) L1ME4a|LINE|L1 62271 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 294-11 chr7 2961393 2962036 + 0.666667 NA intron (NM_032415, intron 1 of 24) AluSq|SINE|Alu 82153 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 175.333-32 chr22 26952199 26952524 + 0.666667 NA Intergenic Intergenic 49069 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 152.333-41 chr3 22258397 22258861 + 0.666667 NA Intergenic Charlie1a|DNA|hAT-Charlie 301490 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 160.167-25 chr18 13682585 13682898 + 0.666667 NA intron (NM_152352, intron 1 of 3) AluSz6|SINE|Alu 40983 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 121.667-9 chr10 51594666 51595016 + 0.666667 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 104754 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 160.667-45 chr2 217302568 217302876 + 0.666667 NA non-coding (NR_133642, exon 4 of 6) non-coding (NR_133642, exon 4 of 6) 19989 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 180.333-47 chr4 144417472 144417861 + 0.666667 NA Intergenic MSTA|LTR|ERVL-MaLR 228353 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 119-8 chr1 171704447 171704757 + 0.666667 NA intron (NM_001185127, intron 7 of 7) intron (NM_001185127, intron 7 of 7) 37463 NM_003762 8674 Hs.6651 NM_003762 ENSG00000117533 VAMP4 VAMP-4|VAMP24 vesicle associated membrane protein 4 protein-coding 144-24 chr17 44189319 44189577 + 0.666667 NA exon (NM_001353174, exon 3 of 5) exon (NM_001353174, exon 3 of 5) 2245 NM_001353173 79089 Hs.181391 NM_024107 ENSG00000168591 TMUB2 FP2653 transmembrane and ubiquitin like domain containing 2 protein-coding 137.833-27 chr4 44195940 44196162 + 0.666667 NA intron (NM_198353, intron 1 of 1) MER45B|DNA|hAT-Tip100 178989 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 153.167-29 chr2 239445940 239446216 + 0.666667 NA Intergenic Intergenic 44330 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 135.667-46 chr18 34903509 34903745 + 0.666667 NA Intergenic Intergenic -73301 NM_001143826 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 190.333-45 chr4 181450428 181450738 + 0.666667 NA Intergenic Intergenic -185554 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 147.667-17 chr13 95707103 95707434 + 0.666667 NA intron (NM_006260, intron 1 of 11) MER1B|DNA|hAT-Charlie 30129 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 153.667-8 chr10 31098845 31099306 + 0.666667 NA Intergenic Intergenic -67138 NM_001143770 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 129-32 chr13 83076203 83076453 + 0.666667 NA Intergenic AluJo|SINE|Alu 806065 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 138.333-29 chr14 60144718 60144983 + 0.666667 NA 3' UTR (NM_001322281, exon 7 of 7) 3' UTR (NM_001322281, exon 7 of 7) 20548 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 166.333-64 chr5 124548023 124548377 + 0.666667 NA Intergenic Intergenic -109680 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 191.5-34 chr3 142923783 142924146 + 0.666667 NA Intergenic L1MC1|LINE|L1 -2711 NR_038455 100507389 Hs.38715 NR_038455 ENSG00000243818 LOC100507389 - uncharacterized LOC100507389 ncRNA 216.666 chr10 89281659 89282270 + 0.666667 NA Intergenic Intergenic -20082 NM_001547 3433 Hs.437609 NM_001547 ENSG00000119922 IFIT2 G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 interferon induced protein with tetratricopeptide repeats 2 protein-coding 213.667-12 chr15 59904832 59905349 + 0.666667 NA Intergenic Intergenic -99221 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 116.667-3 chr1 110556640 110556929 + 0.666667 NA Intergenic Intergenic -37609 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 151.167-35 chr3 17413323 17413652 + 0.666667 NA intron (NM_001349091, intron 2 of 19) intron (NM_001349091, intron 2 of 19) 286533 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 132.667-64 chr3 98551694 98551967 + 0.666667 NA Intergenic Intergenic 19852 NM_005290 2838 Hs.162987 NM_005290 ENSG00000154165 GPR15 BOB G protein-coupled receptor 15 protein-coding 186.833-22 chr2 27288318 27288617 + 0.666667 NA intron (NM_187841, intron 1 of 8) intron (NM_187841, intron 1 of 8) 6038 NM_032546 57159 Hs.516036 NM_032546 ENSG00000138100 TRIM54 MURF|MURF-3|RNF30|muRF3 tripartite motif containing 54 protein-coding 132.333-15 chr10 86833032 86833308 + 0.666667 NA intron (NM_004329, intron 1 of 12) L1MB8|LINE|L1 76531 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 123.667-77 chr4 48247246 48247444 + 0.666667 NA intron (NM_003215, intron 1 of 17) L1MB5|LINE|L1 22493 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 245.333-21 chr7 4062201 4062749 + 0.666667 NA intron (NM_152744, intron 19 of 44) L1MA4A|LINE|L1 -67210 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 205.333-36 chr22 33335572 33335925 + 0.666667 NA intron (NM_133642, intron 10 of 14) L2b|LINE|L2 100921 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 185.667-33 chr3 95717210 95717620 + 0.666667 NA Intergenic Intergenic -34222 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 171-16 chr16 52752602 52753005 + 0.666667 NA Intergenic Intergenic -145828 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 171.333-42 chr22 26608314 26608657 + 0.666667 NA intron (NM_001887, intron 3 of 5) MER113|DNA|hAT-Charlie 9542 NM_001887 1414 Hs.37135 NM_001887 ENSG00000100122 CRYBB1 CATCN3|CTRCT17 crystallin beta B1 protein-coding 140.833-61 chr8 61935722 61936067 + 0.666667 NA Intergenic Intergenic 46055 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 134.5-51 chr22 26714589 26714827 + 0.666667 NA intron (NR_110543, intron 1 of 5) intron (NR_110543, intron 1 of 5) 41865 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 143.167-21 chr15 71283983 71284601 + 0.666667 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) -95233 NR_120348 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 158-48 chr7 36775995 36776481 + 0.666667 NA Intergenic Intergenic -51689 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 163.833-45 chr4 177446097 177446475 + 0.666667 NA Intergenic Intergenic -3783 NR_033655 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 205.167-12 chr13 66702678 66703060 + 0.666667 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -122300 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 144.5-33 chr15 92940154 92940511 + 0.666667 NA intron (NM_001042572, intron 7 of 12) AluJo|SINE|Alu 35933 NR_036136 100422995 NR_036136 ENSG00000284324 MIR3175 mir-3175 microRNA 3175 ncRNA 184.333-45 chr4 116699718 116700189 + 0.666667 NA Intergenic L1M2a|LINE|L1 385623 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 224.5 chr1 44715281 44715872 + 0.666667 NA intron (NM_001145636, intron 6 of 11) AluSx1|SINE|Alu 6325 NR_002753 26828 NR_002753 ENSG00000199377 RNU5F-1 RNU5F|U5F RNA, U5F small nuclear 1 snRNA 143.167-47 chr3 111015059 111015484 + 0.666667 NA Intergenic Intergenic 54688 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 137.167-69 chr8 76995583 76995938 + 0.666667 NA intron (NM_001172086, intron 2 of 4) intron (NM_001172086, intron 2 of 4) 4318 NM_000318 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 146-57 chr5 19682646 19683013 + 0.666667 NA intron (NM_001349562, intron 5 of 13) intron (NM_001349562, intron 5 of 13) 203443 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 172.333-45 chr20 39433854 39434284 + 0.666667 NA Intergenic Intergenic -209321 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 168-54 chr5 35144246 35144608 + 0.666667 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) -26305 NM_001204317 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 166.667-31 chr22 30983713 30984115 + 0.666667 NA Intergenic Intergenic 14703 NR_110493 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 210.333-18 chr2 108080060 108080466 + 0.666667 NA Intergenic L2|LINE|L2 -27508 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 168-27 chr2 62399816 62400203 + 0.666667 NA Intergenic AluSx|SINE|Alu 106186 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 192.667-19 chr14 71603915 71604272 + 0.666667 NA intron (NM_001354286, intron 6 of 24) AluJb|SINE|Alu 17795 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 151.333-3 chr1 217443467 217443873 + 0.666667 NA intron (NM_018040, intron 9 of 9) L1MEd|LINE|L1 187420 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 207.667-50 chr9 88795110 88795698 + 0.666667 NA Intergenic AluJr|SINE|Alu -49499 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 114.333-112 chr6 147618721 147619024 + 0.666667 NA Intergenic Intergenic 110182 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 127.333-61 chr20 33782640 33782952 + 0.666667 NA intron (NM_001282933, intron 11 of 14) intron (NM_001282933, intron 11 of 14) 28303 NR_110623 101929746 Hs.504633 NR_110623 ENSG00000230753 ZNF341-AS1 - ZNF341 antisense RNA 1 ncRNA 207 chr1 28936647 28937162 + 0.666667 NA intron (NM_001166006, intron 1 of 14) L1MC3|LINE|L1 22328 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 133-30 chr14 53808674 53809064 + 0.666667 NA Intergenic Intergenic 139615 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 197.667-37 chr20 52338416 52339082 + 0.666667 NA Intergenic Tigger19a|DNA|TcMar-Tigger -146764 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 122.667-95 chr8 105803408 105803672 + 0.666667 NA 3' UTR (NM_001362836, exon 7 of 7) 3' UTR (NM_001362836, exon 7 of 7) 256963 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 140.667-13 chr10 109361044 109361500 + 0.666667 NA Intergenic Intergenic 561974 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 178.167-29 chr20 54858175 54858643 + 0.666667 NA Intergenic MER89|LTR|ERV1 382816 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 210.667-39 chr3 133741341 133741746 + 0.666667 NA intron (NM_001354703, intron 7 of 22) L1M5|LINE|L1 -4850 NM_001354704 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 170.5-54 chr5 36748521 36748942 + 0.666667 NA Intergenic Intergenic 127963 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 134.167-47 chr2 116488249 116488775 + 0.666667 NA Intergenic ERVL-B4-int|LTR|ERVL 1144697 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 117.667-103 chr5 84105375 84105724 + 0.666667 NA intron (NM_001278642, intron 5 of 9) intron (NM_001278642, intron 5 of 9) 279318 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 139.833-41 chr2 79111983 79112309 + 0.666667 NA Intergenic L1PA11|LINE|L1 -8342 NM_002909 5967 Hs.49407 NM_002909 ENSG00000115386 REG1A ICRF|P19|PSP|PSPS|PSPS1|PTP|REG regenerating family member 1 alpha protein-coding 227-18 chr3 23948260 23948788 + 0.666667 NA intron (NM_001145425, intron 1 of 7) intron (NM_001145425, intron 1 of 7) 2403 NM_001145425 9975 Hs.37288 NM_005126 ENSG00000174738 NR1D2 BD73|EAR-1R|REVERBB|REVERBbeta|RVR nuclear receptor subfamily 1 group D member 2 protein-coding 136-24 chr15 63430373 63430660 + 0.666667 NA intron (NR_120375, intron 4 of 6) AluJb|SINE|Alu 40286 NR_120375 102723344 Hs.569500 NR_120375 LINC02568 - long intergenic non-protein coding RNA 2568 ncRNA 165-36 chr3 93934308 93934638 + 0.666667 NA intron (NM_001314077, intron 1 of 15) intron (NM_001314077, intron 1 of 15) 39608 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 143-35 chr2 36211840 36212054 + 0.666667 NA Intergenic L2c|LINE|L2 143623 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 189.333-3 chr10 72675955 72676388 + 0.666667 NA Intergenic MIRb|SINE|MIR -15960 NR_073062 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 149.667-27 chr16 12929905 12930270 + 0.666667 NA intron (NM_001145204, intron 2 of 4) L2a|LINE|L2 28489 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 126-32 chr15 97423792 97424070 + 0.666667 NA intron (NR_120324, intron 3 of 4) intron (NR_120324, intron 3 of 4) 97880 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 172.333-62 chr4 167566929 167567199 + 0.666667 NA Intergenic L1PA10|LINE|L1 -332474 NM_001251967 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 167.667-71 chr5 61349451 61349849 + 0.666667 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 17392 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 151.167 chr1 7994146 7994433 + 0.666667 NA Intergenic L1MB3|LINE|L1 32020 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 125.667-45 chr17 70887771 70888305 + 0.666667 NA Intergenic Intergenic 314141 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 173.167-49 chr8 69314063 69314521 + 0.666667 NA Intergenic AluSq2|SINE|Alu 133952 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 181-48 chr4 63376656 63377155 + 0.666667 NA Intergenic Intergenic 1032545 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 237.833-25 chr9 104456445 104456884 + 0.666667 NA Intergenic Intergenic -47599 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 168.5-25 chr18 70766668 70766926 + 0.666667 NA Intergenic L1PA10|LINE|L1 -115843 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 189.833-6 chr14 53606979 53607279 + 0.666667 NA Intergenic Intergenic 341355 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 205-21 chr20 41824516 41824831 + 0.666667 NA Intergenic L1MA3|LINE|L1 -206296 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 208.167-14 chr2 184583613 184584130 + 0.666667 NA Intergenic L1MC2|LINE|L1 -14658 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 212-44 chr9 113128353 113129089 + 0.666667 NA Intergenic Intergenic 15825 NR_024366 286333 Hs.99052 NR_024366 ENSG00000231528 FAM225A C9orf109|LINC00256A|NCRNA00256A family with sequence similarity 225 member A ncRNA 188-32 chr2 169859846 169860169 + 0.666667 NA intron (NM_172070, intron 1 of 38) AluSc|SINE|Alu 32499 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 121.167-25 chr14 44526492 44526931 + 0.666667 NA intron (NR_135257, intron 2 of 2) LTR33|LTR|ERVL 19302 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 136.167-61 chr4 147265121 147265753 + 0.666667 NA Intergenic L1MDa|LINE|L1 79280 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 124.5-49 chr3 190486561 190487036 + 0.666667 NA Intergenic Intergenic -27287 NR_157352 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 119.5-47 chr2 58959850 58960245 + 0.666667 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -257661 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 144-47 chr3 81845939 81846239 + 0.666667 NA Intergenic Intergenic -84444 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 114.333-47 chr16 80944327 80944703 + 0.666667 NA Intergenic AluSc8|SINE|Alu -51919 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 117.167-72 chr4 86261743 86262040 + 0.666667 NA intron (NM_001363657, intron 2 of 13) LTR87|LTR|ERVL? 92753 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 113.667-19 chr10 102687233 102687525 + 0.666667 NA intron (NM_004311, intron 4 of 5) AluJo|SINE|Alu 27018 NM_004311 403 Hs.182215 NM_004311 ENSG00000138175 ARL3 ARFL3|JBTS35|RP83 ADP ribosylation factor like GTPase 3 protein-coding 193.333-20 chr16 22624715 22625193 + 0.666667 NA Intergenic L2|LINE|L2 79256 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 118.333-23 chr12 42150257 42150572 + 0.666667 NA Intergenic Intergenic -5540 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 197.5-46 chr5 100242465 100242866 + 0.666667 NA Intergenic MLT1F1|LTR|ERVL-MaLR 145589 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 245.334-5 chr2 219120733 219121710 + 0.666667 NA intron (NM_024782, intron 5 of 7) AluSq2|SINE|Alu 39644 NM_024782 79840 Hs.225988 NM_024782 ENSG00000187736 NHEJ1 XLF non-homologous end joining factor 1 protein-coding 155.667-31 chr18 68063414 68063855 + 0.666667 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat -248812 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 215-5 chr10 17457330 17457678 + 0.666667 NA Intergenic Tigger12c|DNA|TcMar-Tigger -2909 NR_144322 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 157-69 chr5 64768345 64768813 + 0.666667 NA promoter-TSS (NM_001364478) promoter-TSS (NM_001364478) 112 NM_173829 285672 Hs.69504 NM_173829 ENSG00000153006 SREK1IP1 P18SRP|SFRS12IP1 SREK1 interacting protein 1 protein-coding 172.667-30 chr16 78142239 78142603 + 0.666667 NA intron (NM_001291997, intron 3 of 7) intron (NM_001291997, intron 3 of 7) 42767 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 151-84 chr9 75749682 75750043 + 0.666667 NA Intergenic L1MB8|LINE|L1 -140782 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 325.833-6 chr5 106229889 106230999 + 0.666667 NA Intergenic Charlie25|DNA|hAT-Charlie 780570 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 157.667-20 chr12 130833778 130834127 + 0.666667 NA intron (NM_001351051, intron 1 of 10) intron (NM_001351051, intron 1 of 10) 5298 NM_001351052 2054 Hs.437585 NM_001980 ENSG00000111450 STX2 EPIM|EPM|STX2A|STX2B|STX2C syntaxin 2 protein-coding 153.333-45 chr21 34621583 34621935 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR -6646 NM_004414 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 150.667-63 chr3 80738021 80738381 + 0.666667 NA Intergenic Intergenic -26696 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 122.333-25 chr12 63776984 63777214 + 0.666667 NA Intergenic L1MA3|LINE|L1 -2810 NM_014254 10329 Hs.216386 NM_014254 ENSG00000118600 RXYLT1 HP10481|MDDGA10|TMEM5 ribitol xylosyltransferase 1 protein-coding 222.666-2 chr4 129011143 129011762 + 0.666667 NA intron (NM_144643, intron 5 of 20) L1PA13|LINE|L1 82087 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 232.833-3 chr10 119374812 119375514 + 0.666667 NA intron (NM_005308, intron 2 of 15) intron (NM_005308, intron 2 of 15) -2809 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 289.667-8 chr6 117991916 117992648 + 0.666667 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) 85018 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 276.167-2 chr12 44260961 44261482 + 0.666667 NA intron (NM_001286213, intron 4 of 6) MIRb|SINE|MIR 425140 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 229.667-17 chr2 85747946 85748507 + 0.666667 NA Intergenic Intergenic -5765 NM_032827 84913 Hs.135569 NM_032827 ENSG00000168874 ATOH8 HATH6|bHLHa21 atonal bHLH transcription factor 8 protein-coding 247.667-15 chr20 63627144 63627560 + 0.666667 NA promoter-TSS (NM_012384) promoter-TSS (NM_012384) 117 NR_132417 100505771 Hs.448392 NR_132417 ENSG00000232442 MHENCR - melanoma highly expressed competing endogenous lncRNA for miR-425 and miR-489 ncRNA 177.333-6 chr10 18373318 18373749 + 0.666667 NA intron (NM_201590, intron 1 of 12) MIRb|SINE|MIR -27042 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 200.333-5 chr10 46083169 46083662 + 0.666667 NA Intergenic AluSq2|SINE|Alu -26080 NR_126580 653268 Hs.447454 NM_001077685 AGAP7P AGAP-7|AGAP7|CTGLF4|bA109G10.1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene pseudo 121.5-84 chr5 54979256 54979572 + 0.666667 NA exon (NM_007036, exon 3 of 3) exon (NM_007036, exon 3 of 3) 6179 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 190.834-5 chr4 178113642 178114240 + 0.666667 NA Intergenic Intergenic -206005 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 198-58 chr7 95886787 95887324 + 0.666667 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 114549 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 209.167-28 chr4 173866025 173866494 + 0.666667 NA Intergenic FLAM_A|SINE|Alu -31014 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 188.5-5 chr1 167836406 167836736 + 0.666667 NA intron (NM_018417, intron 22 of 32) intron (NM_018417, intron 22 of 32) 77563 NM_001167749 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 174.667-59 chr6 95311932 95312439 + 0.666667 NA Intergenic Intergenic 265266 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 153-10 chr10 60830347 60830723 + 0.666667 NA Intergenic Intergenic 52057 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 121.333-101 chr7 44407917 44408131 + 0.666667 NA intron (NM_015332, intron 3 of 5) HAL1|LINE|L1 -82393 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 138.833-59 chr4 13041775 13042047 + 0.666667 NA Intergenic Intergenic 442429 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 202.5-5 chr14 46670882 46671498 + 0.666667 NA Intergenic Intergenic -19409 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 326.833 chr1 203137229 203138099 + 0.666667 NA intron (NM_001365066, intron 2 of 2) intron (NM_001365066, intron 2 of 2) 9938 NM_001365065 134 Hs.77867 NM_000674 ENSG00000163485 ADORA1 RDC7 adenosine A1 receptor protein-coding 114-42 chr14 64520742 64520987 + 0.666667 NA intron (NR_110550, intron 2 of 3) AluJb|SINE|Alu -15651 NM_001304507 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 186-56 chr8 81387520 81387913 + 0.666667 NA Intergenic AluSz|SINE|Alu 59723 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 139.333-89 chr7 86454749 86455000 + 0.666667 NA Intergenic Intergenic -189035 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 180.667-54 chr4 71486493 71486924 + 0.666667 NA intron (NM_003759, intron 11 of 22) intron (NM_003759, intron 11 of 22) 147655 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 118-42 chr15 95442850 95443070 + 0.666667 NA intron (NR_027133, intron 1 of 5) intron (NR_027133, intron 1 of 5) 9867 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 127.167-13 chr10 37969493 37969719 + 0.666667 NA intron (NR_138063, intron 3 of 8) L1MB5|LINE|L1 6374 NR_138069 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 151.667-52 chr21 20792182 20792511 + 0.666667 NA intron (NR_109787, intron 1 of 6) MER50|LTR|ERV1 10762 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 115.167-115 chr9 94223806 94224007 + 0.666667 NA intron (NR_160773, intron 1 of 2) L1ME3G|LINE|L1 -19340 NR_046165 158257 Hs.652626 NR_046163 ENSG00000230262 LINC02603 MIRLET7DHG long intergenic non-protein coding RNA 2603 ncRNA 133.667-69 chr4 146920431 146920859 + 0.666667 NA intron (NR_133922, intron 4 of 13) intron (NR_133922, intron 4 of 13) 25219 NR_133922 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 120.333-24 chr11 45131370 45131624 + 0.666667 NA intron (NM_001359633, intron 2 of 7) L1ME4a|LINE|L1 -15846 NM_001256695 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 238-21 chr4 62457897 62458447 + 0.666667 NA Intergenic Charlie25|DNA|hAT-Charlie -296407 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 159.333-17 chr10 115357989 115358410 + 0.666667 NA intron (NM_207303, intron 19 of 28) intron (NM_207303, intron 19 of 28) 264834 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 269.333-6 chr13 44223662 44224118 + 0.666667 NA Intergenic L2c|LINE|L2 -27690 NR_107046 102465876 NR_107046 ENSG00000276319 MIR8079 hsa-mir-8079 microRNA 8079 ncRNA 188.333-18 chr14 84058879 84059180 + 0.666667 NA Intergenic Intergenic -1212903 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 124.5-67 chr7 3343178 3343410 + 0.666667 NA intron (NM_152744, intron 1 of 44) L1MD1|LINE|L1 42042 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 272.333-16 chr3 96222714 96223317 + 0.666667 NA Intergenic AluSz|SINE|Alu -136949 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 187.333-10 chr10 66185357 66185844 + 0.666667 NA intron (NM_001127384, intron 13 of 17) Charlie17|DNA|hAT-Charlie 614175 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 148.5-35 chr2 41825921 41826194 + 0.666667 NA Intergenic L2c|LINE|L2 -51498 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 172-29 chr16 77918312 77918836 + 0.666667 NA intron (NM_020927, intron 7 of 8) intron (NM_020927, intron 7 of 8) -103974 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 203.5-20 chr2 75042023 75042386 + 0.666667 NA Intergenic Intergenic -48608 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 295.833-3 chr2 38608297 38608873 + 0.666667 NA Intergenic Intergenic -5549 NM_001142650 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 132.5-46 chr2 48515149 48515430 + 0.666667 NA TTS (NM_152994) TTS (NM_152994) -14636 NM_001198593 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 190.167-30 chr21 18902484 18902850 + 0.666667 NA Intergenic Intergenic -142855 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 122.5-94 chr8 18919048 18919322 + 0.666667 NA intron (NM_015310, intron 2 of 15) L3|LINE|CR1 -32128 NM_001362819 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 158-31 chr3 50843723 50844154 + 0.666667 NA intron (NM_004947, intron 3 of 52) intron (NM_004947, intron 3 of 52) 168858 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 131.667-66 chr20 42263955 42264192 + 0.666667 NA intron (NM_007050, intron 13 of 30) L2|LINE|L2 -421410 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 161.5-17 chr17 69159098 69159477 + 0.666667 NA intron (NM_080282, intron 28 of 39) L1M4a2|LINE|L1 -17392 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 189-44 chr6 76327931 76328488 + 0.666667 NA Intergenic LTR19A|LTR|ERV1 -255531 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 201.834-3 chr14 65714639 65715219 + 0.666667 NA intron (NR_038167, intron 7 of 8) L1M1|LINE|L1 243827 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 147.833-14 chr12 18772729 18773084 + 0.666667 NA Intergenic L1PA15|LINE|L1 34787 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 135.833-29 chr19 24388642 24388961 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr -225354 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 226-3 chr12 59278416 59279061 + 0.666667 NA Intergenic LTR16A1|LTR|ERVL -317291 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 228.167-27 chr8 110443764 110444338 + 0.666667 NA Intergenic Intergenic -468280 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 150.667-33 chr14 72765092 72765348 + 0.666667 NA intron (NM_001280544, intron 2 of 9) L1ME1|LINE|L1 127429 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 146.5-77 chr6 142659530 142659970 + 0.666667 NA Intergenic LTR37-int|LTR|ERV1 -21861 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 129.333-19 chr11 101762109 101762343 + 0.666667 NA Intergenic Intergenic -152784 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 165.667-35 chr2 47492864 47493261 + 0.666667 NA Intergenic MLT1J|LTR|ERVL-MaLR -34475 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 141.667-89 chr5 75068004 75068461 + 0.666667 NA TTS (NM_001164443) TTS (NM_001164443) -15674 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 183.667-30 chr16 86952414 86952716 + 0.666667 NA Intergenic Intergenic -105219 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 134.167-50 chr2 199777378 199777707 + 0.666667 NA intron (NM_001350855, intron 3 of 3) MLT2D|LTR|ERVL 73631 NM_001350854 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 125.667-5 chr1 77671496 77671776 + 0.666667 NA intron (NM_001308237, intron 1 of 13) MIR|SINE|MIR 11022 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 211-33 chr5 161834337 161834876 + 0.666667 NA Intergenic Intergenic -12585 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 237.333-5 chr11 82857736 82858098 + 0.666667 NA intron (NM_001319214, intron 1 of 7) intron (NM_001319214, intron 1 of 7) 42513 NM_005040 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 197.333-2 chr1 154511633 154512091 + 0.666667 NA intron (NM_182499, intron 4 of 12) AluSx3|SINE|Alu -9450 NR_135169 126669 Hs.591481 NM_001010846 ENSG00000169291 SHE - Src homology 2 domain containing E protein-coding 148.5-67 chr7 83104642 83105136 + 0.666667 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 57995 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 194-9 chr11 87595558 87596231 + 0.666667 NA Intergenic X7C_LINE|LINE|CR1 123517 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 131.667-106 chr5 144912744 144913059 + 0.666667 NA Intergenic L1MA8|LINE|L1 707510 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 176.5-31 chr2 79335325 79335878 + 0.666667 NA Intergenic Intergenic 165243 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 153.167-21 chr17 66004117 66004379 + 0.666667 NA intron (NM_001353129, intron 17 of 26) AluSg|SINE|Alu -177705 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 163.167-34 chr5 93183265 93183649 + 0.666667 NA Intergenic Intergenic 387886 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 207.333-19 chr14 67914982 67915438 + 0.666667 NA intron (NM_133509, intron 7 of 10) L1PA16|LINE|L1 91618 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 159.333-47 chr3 16475014 16475289 + 0.666667 NA intron (NM_015150, intron 2 of 9) MSTB1|LTR|ERVL-MaLR 38548 NM_015150 23180 Hs.98910 NM_015150 ENSG00000131378 RFTN1 MIG2|PIB10|PIG9|RAFTLIN raftlin, lipid raft linker 1 protein-coding 126.667-39 chr2 60344188 60344489 + 0.666667 NA Intergenic L1ME2|LINE|L1 38698 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 125.833-40 chr2 66697870 66698290 + 0.666667 NA intron (NR_110265, intron 2 of 2) intron (NR_110265, intron 2 of 2) 5147 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 175-28 chr18 70895555 70895872 + 0.666667 NA Intergenic Intergenic -244759 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 241-19 chr4 101627325 101627725 + 0.666667 NA Intergenic Intergenic -163082 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 167.667-92 chr9 13644341 13644805 + 0.666667 NA Intergenic Intergenic -213244 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 141.667-59 chr22 33649635 33650027 + 0.666667 NA intron (NM_133642, intron 3 of 14) intron (NM_133642, intron 3 of 14) 55089 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 197.833-39 chr9 100108151 100108509 + 0.666667 NA intron (NR_134606, intron 2 of 16) intron (NR_134606, intron 2 of 16) 9087 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 143.167-78 chr7 153634957 153635257 + 0.666667 NA Intergenic Intergenic -113026 NM_001364500 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 128-66 chr4 72452876 72453133 + 0.666667 NA intron (NM_014243, intron 3 of 21) MER103C|DNA|hAT-Charlie 116217 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 151.333-13 chr11 6857089 6857357 + 0.666667 NA Intergenic Intergenic 11540 NM_178168 144124 Hs.447478 NM_178168 ENSG00000166363 OR10A5 JCG6|OR10A1|OR11-403 olfactory receptor family 10 subfamily A member 5 protein-coding 198.5-28 chr4 39615966 39616496 + 0.666667 NA intron (NM_001317896, intron 1 of 5) AluSz|SINE|Alu 10890 NM_001317897 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 152.5-22 chr18 3029193 3029540 + 0.666667 NA Intergenic Intergenic -17419 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 149-74 chr8 94323776 94324114 + 0.666667 NA Intergenic Intergenic -61626 NM_181702 2669 Hs.654463 NM_005261 ENSG00000164949 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 124.333-6 chr10 4297181 4297471 + 0.666667 NA Intergenic L1ME3B|LINE|L1 -53414 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 206.167-3 chr12 122157417 122157963 + 0.666667 NA Intergenic L1MB5|LINE|L1 -10029 NM_152759 254050 Hs.374856 NM_152759 ENSG00000158113 LRRC43 - leucine rich repeat containing 43 protein-coding 156.333-7 chr1 213106848 213107288 + 0.666667 NA intron (NR_146208, intron 3 of 10) AluSz|SINE|Alu 55827 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 178.667-14 chr14 33075876 33076306 + 0.666667 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 137212 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 251-6 chr12 62437976 62438664 + 0.666667 NA Intergenic Intergenic -28506 NM_001278469 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 125.333-59 chr17 78504635 78504854 + 0.666667 NA intron (NM_173628, intron 31 of 80) intron (NM_173628, intron 31 of 80) 19834 NR_102401 100996295 Hs.615304 NR_102401 DNAH17-AS1 - DNAH17 antisense RNA 1 ncRNA 120.667-42 chr15 45967286 45967592 + 0.666667 NA Intergenic L1ME3B|LINE|L1 262244 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 128.167-18 chr12 30415800 30416074 + 0.666667 NA Intergenic L2a|LINE|L2 261307 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 116.833-57 chr7 10618720 10618961 + 0.666667 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -83836 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 166.667-22 chr2 30045550 30045968 + 0.666667 NA Intergenic Intergenic -101248 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 168.167-5 chr10 12445151 12445718 + 0.666667 NA intron (NM_001351032, intron 3 of 11) intron (NM_001351032, intron 3 of 11) 56452 NM_001351032 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 193.5-58 chr9 100710815 100711256 + 0.666667 NA Intergenic Intergenic 132956 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 116.333-47 chr19 57272432 57272659 + 0.666667 NA intron (NR_136529, intron 2 of 2) AluSx|SINE|Alu -7422 NM_001330622 10794 Hs.99971 NM_006635 ENSG00000197714 ZNF460 HZF8|ZNF272 zinc finger protein 460 protein-coding 198.333-18 chr18 10822791 10823312 + 0.666667 NA intron (NM_022068, intron 7 of 51) Tigger14a|DNA|TcMar-Tigger -63402 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 130.5-66 chr5 115274461 115274788 + 0.666667 NA intron (NM_001040440, intron 6 of 9) intron (NM_001040440, intron 6 of 9) -11747 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 263.667-15 chr6 101831649 101832072 + 0.666667 NA intron (NM_001166247, intron 9 of 16) intron (NM_001166247, intron 9 of 16) 432875 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 227.667-23 chr5 16404324 16404685 + 0.666667 NA intron (NR_104625, intron 7 of 8) L1M5|LINE|L1 36598 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 127.333-66 chr21 20531165 20531616 + 0.666667 NA Intergenic L1MC|LINE|L1 271718 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 147.833-55 chr5 87760534 87760793 + 0.666667 NA Intergenic Intergenic 98621 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 167-64 chr8 138969598 138970021 + 0.666667 NA Intergenic Intergenic -55768 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 121.833-75 chr8 139226663 139226916 + 0.666667 NA Intergenic L2c|LINE|L2 -312748 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 123.333-119 chrX 74967690 74968028 + 0.666667 NA Intergenic Intergenic -42407 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 151-80 chr8 127503890 127504275 + 0.666667 NA Intergenic Intergenic -21943 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 132.667-48 chr2 34185165 34185396 + 0.666667 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 118054 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 192.333-53 chr8 128441240 128441656 + 0.666667 NA intron (NR_121672, intron 2 of 7) L1PA13|LINE|L1 123231 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 157.167-49 chr5 41411216 41411715 + 0.666667 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 99136 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 182.667-35 chr2 229587759 229588077 + 0.666667 NA intron (NM_139072, intron 3 of 12) intron (NM_139072, intron 3 of 12) 126637 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 261.667-2 chr10 19085537 19086152 + 0.666667 NA intron (NM_001142308, intron 2 of 39) intron (NM_001142308, intron 2 of 39) 37043 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 269-11 chr3 38602509 38603150 + 0.666667 NA intron (NM_198056, intron 12 of 27) intron (NM_198056, intron 12 of 27) 46843 NM_001099404 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 123.833-10 chr10 123677580 123677765 + 0.666667 NA intron (NM_153442, intron 2 of 2) intron (NM_153442, intron 2 of 2) 11317 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 135.667-36 chr14 65521433 65521694 + 0.666667 NA intron (NM_004480, intron 2 of 9) L2a|LINE|L2 50461 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 138-94 chr6 150050005 150050344 + 0.666667 NA Intergenic Intergenic 18947 NM_024518 79465 Hs.15422 NM_024518 ENSG00000131019 ULBP3 N2DL-3|NKG2DL3|RAET1N UL16 binding protein 3 protein-coding 168.667-46 chr20 24541107 24541600 + 0.666667 NA intron (NM_001323606, intron 2 of 4) intron (NM_001323606, intron 2 of 4) 71392 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 157.167-20 chr12 121530324 121530617 + 0.666667 NA intron (NM_001005366, intron 8 of 22) Charlie18a|DNA|hAT-Charlie 49776 NM_001005366 84678 Hs.524800 NM_032590 ENSG00000089094 KDM2B CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2 lysine demethylase 2B protein-coding 192.333-44 chr5 42314047 42314479 + 0.666667 NA Intergenic L1PA13|LINE|L1 -109176 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 252.333-24 chr8 47646037 47646452 + 0.666667 NA intron (NR_148202, intron 11 of 20) L1ME4b|LINE|L1 -7844 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 127.167-35 chr14 99238229 99238682 + 0.666667 NA intron (NM_001282237, intron 2 of 3) intron (NM_001282237, intron 2 of 3) 33742 NM_138576 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 151-63 chr6 34833150 34833450 + 0.666667 NA intron (NM_017754, intron 4 of 20) MER8|DNA|TcMar-Tigger 41217 NM_017754 54887 Hs.700656 NM_017754 ENSG00000065060 UHRF1BP1 C6orf107|ICBP90|dJ349A12.1 UHRF1 binding protein 1 protein-coding 177-4 chr1 217848600 217849039 + 0.666667 NA intron (NM_138796, intron 9 of 10) HAL1|LINE|L1 -44081 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 115.167-114 chr9 83486555 83487041 + 0.666667 NA intron (NM_174938, intron 1 of 13) intron (NM_174938, intron 1 of 13) -19056 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 126.833-77 chrX 57693119 57693480 + 0.666667 NA Intergenic L1MA7|LINE|L1 -13039 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 199.667-59 chr7 48253140 48253626 + 0.666667 NA intron (NM_152701, intron 15 of 61) intron (NM_152701, intron 15 of 61) 81925 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 146.833-5 chr10 28387278 28387573 + 0.666667 NA Intergenic Intergenic -84361 NM_001318170 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 135.333-3 chr1 150736185 150736550 + 0.666667 NA intron (NM_001199739, intron 6 of 6) MIRb|SINE|MIR -15472 NM_032132 84072 Hs.298312 NM_032132 ENSG00000143452 HORMAD1 CT46|NOHMA HORMA domain containing 1 protein-coding 187.333-26 chr18 26821241 26821617 + 0.666667 NA Intergenic AluJo|SINE|Alu 41481 NM_004028 361 Hs.315369 NM_001650 ENSG00000171885 AQP4 MIWC|WCH4 aquaporin 4 protein-coding 113.333-99 chr7 69699435 69699606 + 0.666667 NA intron (NM_015570, intron 1 of 18) L1ME4b|LINE|L1 101045 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 159-67 chr9 31088227 31088515 + 0.666667 NA Intergenic Intergenic 293119 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 121.333-49 chr2 79720506 79720794 + 0.666667 NA intron (NM_001282598, intron 2 of 17) L1PA16|LINE|L1 -71291 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 217.333-28 chr5 28938206 28938920 + 0.666667 NA Intergenic L1MA3|LINE|L1 11693 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 191.333-32 chr5 143602306 143602830 + 0.666667 NA Intergenic Intergenic -77292 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 125-58 chr3 191918623 191918894 + 0.666667 NA Intergenic L1ME3C|LINE|L1 -319872 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 207-14 chr14 84975512 84976081 + 0.666667 NA Intergenic Intergenic -296136 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 202-8 chr12 112581183 112581746 + 0.666667 NA intron (NM_001347952, intron 1 of 21) THE1B|LTR|ERVL-MaLR 6228 NM_001347952 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 121-62 chr4 41180265 41180596 + 0.666667 NA intron (NM_173075, intron 1 of 16) AluJo|SINE|Alu 34112 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 186.167-4 chr1 195888158 195888499 + 0.666667 NA Intergenic Intergenic 200387 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 173.667-36 chr3 7887068 7887593 + 0.666667 NA Intergenic L1PB1|LINE|L1 128977 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 135-5 chr1 171259413 171259704 + 0.666667 NA intron (NM_001282694, intron 2 of 7) MER117|DNA|hAT-Charlie 1635 NM_001282692 2326 Hs.1424 NM_002021 ENSG00000010932 FMO1 - flavin containing dimethylaniline monoxygenase 1 protein-coding 141.5-16 chr12 12748666 12748926 + 0.666667 NA intron (NM_001130415, intron 1 of 1) intron (NM_001130415, intron 1 of 1) -15853 NR_030344 693198 NR_030344 ENSG00000207983 MIR613 MIRN613|hsa-mir-613 microRNA 613 ncRNA 166.5-29 chr18 60051793 60052062 + 0.666667 NA Intergenic Intergenic 151931 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 179.833-19 chr2 122548490 122548999 + 0.666667 NA Intergenic Intergenic 524737 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 175.333-63 chr7 128124835 128125207 + 0.666667 NA Intergenic L1ME3G|LINE|L1 43160 NR_030324 693178 NR_030324 ENSG00000207588 MIR593 MIRN593|hsa-mir-593 microRNA 593 ncRNA 182.667-46 chr4 163206438 163206786 + 0.666667 NA Intergenic Intergenic -39722 NM_001128931 92345 Hs.129095 NM_138386 ENSG00000145414 NAF1 - nuclear assembly factor 1 ribonucleoprotein protein-coding 139.667-14 chr10 53700642 53701052 + 0.666667 NA Intergenic L2c|LINE|L2 -785383 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 146-66 chr7 116042538 116042802 + 0.666667 NA Intergenic Intergenic -11907 NM_012252 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 141.333-91 chr7 40447846 40448337 + 0.666667 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 313115 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 129.167-16 chr11 78492264 78492489 + 0.666667 NA intron (NM_024678, intron 7 of 13) L2|LINE|L2 -40800 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 225.667-21 chr3 60769083 60769605 + 0.666667 NA intron (NR_148921, intron 4 of 4) ERVL-E-int|LTR|ERVL -151474 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 178.667-29 chr2 114424155 114424633 + 0.666667 NA Intergenic Intergenic -18247 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 183-37 chr3 171546289 171546764 + 0.666667 NA Intergenic Intergenic -86118 NR_027767 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 154.333 chr1 36042339 36042662 + 0.666667 NA intron (NM_177422, intron 14 of 16) intron (NM_177422, intron 14 of 16) -41594 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 161.667-76 chr7 18102477 18102849 + 0.666667 NA intron (NM_001204144, intron 1 of 12) MLT1J|LTR|ERVL-MaLR 15838 NM_001321871 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 135.667-76 chr4 67939008 67939315 + 0.666667 NA intron (NM_001114387, intron 3 of 9) L1PA16|LINE|L1 24332 NM_001114387 339967 Hs.450110 NM_182606 ENSG00000187054 TMPRSS11A ECRG1 transmembrane serine protease 11A protein-coding 115.833-23 chr15 67769700 67770067 + 0.666667 NA intron (NM_001206804, intron 20 of 21) intron (NM_001206804, intron 20 of 21) -55626 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 125-28 chr14 51062114 51062560 + 0.666667 NA intron (NM_015163, intron 1 of 9) L1ME2|LINE|L1 33367 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 130.333-95 chr8 129434749 129435038 + 0.666667 NA intron (NR_130920, intron 1 of 3) L1M1|LINE|L1 49249 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 207.333-41 chr5 97560195 97560656 + 0.666667 NA intron (NR_105028, intron 2 of 3) intron (NR_105028, intron 2 of 3) 55729 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 211.333-5 chr1 86639001 86639644 + 0.666667 NA intron (NR_024604, intron 5 of 14) intron (NR_024604, intron 5 of 14) 5046 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 136.667-54 chr22 27926442 27926824 + 0.666667 NA intron (NR_026963, intron 1 of 4) L1ME2|LINE|L1 -6021 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 144.833-9 chr10 68199095 68199599 + 0.666667 NA intron (NR_045663, intron 14 of 17) intron (NR_045663, intron 14 of 17) 32766 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 122.5 chr1 35122408 35122692 + 0.666667 NA Intergenic MER6|DNA|TcMar-Tigger 43165 NM_024772 79830 Hs.471243 NM_024772 ENSG00000197056 ZMYM1 MYM zinc finger MYM-type containing 1 protein-coding 188.667-43 chr5 30658342 30658809 + 0.666667 NA Intergenic Intergenic -535111 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 154.5-71 chr8 92740620 92740942 + 0.666667 NA intron (NR_046114, intron 1 of 2) intron (NR_046114, intron 1 of 2) 45279 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 133.333-119 chr8 92577050 92577418 + 0.666667 NA intron (NR_125827, intron 3 of 4) L1ME3A|LINE|L1 78260 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 117.167-21 chr14 54934314 54934547 + 0.666667 NA Intergenic L1MB7|LINE|L1 -31604 NM_001024071 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 123.667-38 chr16 72676670 72677016 + 0.666667 NA Intergenic L1MB4|LINE|L1 -11873 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 122.5-3 chr1 54479296 54479787 + 0.666667 NA Intergenic Intergenic -68687 NM_015547 26027 Hs.745173 NM_015547 ENSG00000162390 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 163-3 chr1 78751473 78751796 + 0.666667 NA Intergenic Intergenic 101803 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 140.5-60 chr5 54646571 54646832 + 0.666667 NA Intergenic Intergenic 56623 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 136-78 chr7 46793363 46793604 + 0.666667 NA Intergenic L1MA9|LINE|L1 -96361 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 204.5-10 chr11 116215247 116215655 + 0.666667 NA Intergenic Intergenic -423971 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 147-4 chr1 204595511 204595900 + 0.666667 NA Intergenic L1MEc|LINE|L1 79299 NM_002393 4194 Hs.497492 NM_002393 ENSG00000198625 MDM4 HDMX|MDMX|MRP1 MDM4 regulator of p53 protein-coding 151.333-99 chr9 114507621 114507927 + 0.666667 NA Intergenic Intergenic -2301 NM_001173425 25861 Hs.93836 NM_015404 ENSG00000095397 WHRN CIP98|DFNB31|PDZD7B|USH2D|WI whirlin protein-coding 203.333-29 chr3 193862 194304 + 0.666667 NA Intergenic Intergenic -2513 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 158.667-74 chr6 55169176 55169603 + 0.666667 NA intron (NM_001526, intron 1 of 7) intron (NM_001526, intron 1 of 7) 62929 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 120.5-91 chr9 22457833 22458285 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL 11235 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 144.334-3 chr22 17111228 17111763 + 0.666667 NA 3' UTR (NM_001289905, exon 12 of 12) 3' UTR (NM_001289905, exon 12 of 12) 9865 NM_001163079 27439 Hs.209577 NM_031890 ENSG00000183307 TMEM121B CECR6 transmembrane protein 121B protein-coding 144.333-84 chr8 40340912 40341228 + 0.666667 NA intron (NR_156738, intron 1 of 2) L2a|LINE|L2 2293 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 130.333-79 chr6 50824521 50824892 + 0.666667 NA intron (NM_003221, intron 2 of 6) intron (NM_003221, intron 2 of 6) 5835 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 203.333-32 chr3 115010744 115011087 + 0.666667 NA intron (NM_015642, intron 1 of 9) L1MA3|LINE|L1 60499 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 138-32 chr14 57524438 57524742 + 0.666667 NA Intergenic L1PB1|LINE|L1 -30733 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 274.5-16 chr5 42170409 42171033 + 0.666667 NA intron (NR_104635, intron 1 of 3) intron (NR_104635, intron 1 of 3) 4624 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 218.833-14 chr18 11186870 11187536 + 0.666667 NA Intergenic Intergenic -38441 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 202-44 chr8 101589644 101590080 + 0.666667 NA intron (NM_024915, intron 7 of 15) intron (NM_024915, intron 7 of 15) 97423 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 196.667-54 chr8 71470540 71470982 + 0.666667 NA intron (NM_001370336, intron 2 of 17) intron (NM_001370336, intron 2 of 17) 76943 NM_001370334 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 147.333-70 chr5 142854466 142854752 + 0.666667 NA intron (NM_001349547, intron 1 of 21) intron (NM_001349547, intron 1 of 21) 14301 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 135.833-22 chr17 19494463 19494736 + 0.666667 NA Intergenic MLT2B1|LTR|ERVL -39255 NM_018242 55244 Hs.232054 NM_018242 ENSG00000142494 SLC47A1 MATE1 solute carrier family 47 member 1 protein-coding 116.167-70 chr7 15791227 15791594 + 0.666667 NA Intergenic L1MA3|LINE|L1 103032 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 113.667-71 chr2 177628613 177628798 + 0.666667 NA TTS (NM_001077358) TTS (NM_001077358) -9963 NM_152275 92104 Hs.128384 NM_152275 ENSG00000197557 TTC30A IFT70A|TTC30B tetratricopeptide repeat domain 30A protein-coding 120.667-101 chr6 146407958 146408287 + 0.666667 NA intron (NM_001278067, intron 7 of 7) MLT1A0|LTR|ERVL-MaLR -135711 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 148-30 chr14 72080058 72080377 + 0.666667 NA intron (NM_001370288, intron 2 of 16) L1MA8|LINE|L1 146690 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 127.667-10 chr10 36576978 36577233 + 0.666667 NA Intergenic AluSc|SINE|Alu -548752 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 148.667-34 chr2 54228001 54228370 + 0.666667 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 28044 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 173.833-12 chr11 29201745 29202065 + 0.666667 NA Intergenic MIRb|SINE|MIR -392508 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 149.5-42 chr22 49241657 49242029 + 0.666667 NA Intergenic CpG 301623 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 122.667-11 chr10 86607675 86607940 + 0.666667 NA Intergenic AluJr|SINE|Alu -46740 NM_033282 94233 Hs.283922 NM_033282 ENSG00000122375 OPN4 MOP opsin 4 protein-coding 174.167-30 chr4 102513105 102513419 + 0.666667 NA intron (NM_001319226, intron 1 of 23) intron (NM_001319226, intron 1 of 23) -10776 NR_136202 105377621 Hs.15833 NR_136202 LOC105377621 - uncharacterized LOC105377621 ncRNA 194.667-60 chr7 90024079 90024456 + 0.666667 NA intron (NR_110029, intron 2 of 2) L1MA1|LINE|L1 -95133 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 132-65 chr5 15322852 15323188 + 0.666667 NA Intergenic MIRc|SINE|MIR -56460 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 272-14 chr7 15142173 15142670 + 0.666667 NA Intergenic Intergenic -167563 NM_001350722 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 212.333-22 chr20 34119277 34119806 + 0.666667 NA Intergenic L2c|LINE|L2 -7298 NM_001316364 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 178.833-23 chr20 16296217 16296660 + 0.666667 NA intron (NM_024704, intron 25 of 25) intron (NM_024704, intron 25 of 25) 277010 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 131-2 chr1 68361120 68361414 + 0.666667 NA Intergenic MIRb|SINE|MIR 88687 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 200.167-46 chr9 34187807 34188298 + 0.666667 NA intron (NM_001171201, intron 1 of 5) intron (NM_001171201, intron 1 of 5) 9009 NM_016525 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 120.667-94 chr5 98188616 98188934 + 0.666667 NA Intergenic Intergenic -27536 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 210.833-2 chr1 213731992 213732489 + 0.666667 NA Intergenic Intergenic -192509 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 198.333-33 chr5 26581411 26582207 + 0.666667 NA Intergenic Intergenic 456777 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 118.667-49 chr18 71815438 71815664 + 0.666667 NA Intergenic L1MB7|LINE|L1 -33325 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 271.833-12 chr8 48717445 48717954 + 0.666667 NA intron (NR_157026, intron 5 of 5) L1MA9|LINE|L1 17569 NM_001363974 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 187.333-43 chr22 22966101 22966521 + 0.666667 NA Intergenic L1MA2|LINE|L1 78495 NM_001178126 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 136.5-62 chr3 78884925 78885391 + 0.666667 NA intron (NM_002941, intron 4 of 30) L1PA13|LINE|L1 134301 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 137-35 chr14 76120102 76120420 + 0.666667 NA Intergenic MER119|DNA|hAT-Charlie -31624 NM_001322032 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 145.167-6 chr1 156005583 156005943 + 0.666667 NA Intergenic MER47A|DNA|TcMar-Tigger 15188 NM_003145 6746 Hs.74564 NM_003145 ENSG00000163479 SSR2 HSD25|TLAP|TRAP-BETA|TRAPB signal sequence receptor subunit 2 protein-coding 133.833-43 chr2 224579546 224579798 + 0.666667 NA intron (NM_003590, intron 1 of 15) intron (NM_003590, intron 1 of 15) 5691 NM_003590 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 313.333-3 chr21 15977423 15978208 + 0.666667 NA Intergenic Intergenic -92673 NR_136541 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 130.333-68 chr4 90047112 90047452 + 0.666667 NA Intergenic Intergenic -80251 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 140.667-17 chr11 118775854 118776202 + 0.666667 NA intron (NM_001257191, intron 4 of 13) AluJo|SINE|Alu 14920 NM_001257191 1656 Hs.408461 NM_004397 ENSG00000110367 DDX6 HLR2|P54|RCK DEAD-box helicase 6 protein-coding 134.667 chr1 50327984 50328403 + 0.666667 NA Intergenic L1MC5|LINE|L1 95250 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 224-32 chr6 21799224 21799739 + 0.666667 NA intron (NR_015410, intron 3 of 11) AluSx1|SINE|Alu 133068 NR_015410 401237 Hs.712707 NR_015410 CASC15 CANT|LINC00340|lnc-SOX4-1 cancer susceptibility 15 ncRNA 183.667-5 chr1 68943816 68944173 + 0.666667 NA Intergenic Intergenic -111904 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 120.833-57 chr5 53089885 53090360 + 0.666667 NA intron (NR_073106, intron 29 of 29) intron (NR_073106, intron 29 of 29) 19635 NM_176806 4338 Hs.163645 NM_004531 ENSG00000164172 MOCS2 MCBPE|MOCO1|MOCODB|MPTS molybdenum cofactor synthesis 2 protein-coding 195-36 chr4 72209393 72209951 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie 170540 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 218-20 chr17 74666090 74666639 + 0.666667 NA Intergenic AluJr|SINE|Alu -4767 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 150.833-40 chr5 60405700 60406115 + 0.666667 NA intron (NM_001364599, intron 1 of 16) MIRb|SINE|MIR -33244 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 194.167-22 chr4 48541080 48541437 + 0.666667 NA intron (NM_015030, intron 45 of 63) L2|LINE|L2 51006 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 132.667-59 chr22 39107861 39108410 + 0.666667 NA Intergenic MER57-int|LTR|ERV1 10891 NM_001166002 164668 Hs.440515 NM_181773 ENSG00000100298 APOBEC3H A3H|ARP-10|ARP10 apolipoprotein B mRNA editing enzyme catalytic subunit 3H protein-coding 211.5-27 chr5 21588385 21588749 + 0.666667 NA non-coding (NR_027026, exon 5 of 5) non-coding (NR_027026, exon 5 of 5) 129087 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 163.333-5 chr1 177604580 177604854 + 0.666667 NA Intergenic L1MEd|LINE|L1 -95807 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 115.333-66 chr22 43145373 43145793 + 0.666667 NA Intergenic AluSp|SINE|Alu -2185 NM_173467 27349 Hs.349111 NM_014507 ENSG00000100294 MCAT FASN2C|MCT|MCT1|MT|NET62|fabD malonyl-CoA-acyl carrier protein transacylase protein-coding 189-12 chr2 102916193 102916607 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR -20678 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 161-57 chr5 177212115 177212441 + 0.666667 NA intron (NM_172349, intron 6 of 23) intron (NM_172349, intron 6 of 23) 78049 NM_001365684 64324 Hs.106861 NM_022455 ENSG00000165671 NSD1 ARA267|KMT3B|SOTOS|SOTOS1|STO nuclear receptor binding SET domain protein 1 protein-coding 149.667-11 chr10 55354674 55355208 + 0.666667 NA intron (NM_001354404, intron 2 of 34) L1MD2|LINE|L1 -244101 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 190.667-22 chr2 153182536 153182958 + 0.666667 NA Intergenic L1PA11|LINE|L1 296015 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 152.167-77 chr8 134048042 134048483 + 0.666667 NA Intergenic Intergenic 161766 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 241.333-12 chr16 78605444 78606178 + 0.666667 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 506157 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 207.167-23 chr4 82466852 82467448 + 0.666667 NA Intergenic MLT1C|LTR|ERVL-MaLR 36560 NR_120457 58478 Hs.18442 NM_021204 ENSG00000145293 ENOPH1 E1|MASA|MST145|mtnC enolase-phosphatase 1 protein-coding 125.333-101 chr6 37324294 37324612 + 0.666667 NA intron (NR_130108, intron 12 of 12) intron (NR_130108, intron 12 of 12) -29530 NM_003958 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 189.333-20 chr2 34120647 34121138 + 0.666667 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 53666 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 115.667-71 chr3 18189792 18189995 + 0.666667 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 227341 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 192.667-24 chr2 35780269 35780716 + 0.666667 NA Intergenic THE1A-int|LTR|ERVL-MaLR 309087 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 171-51 chr5 169026494 169027039 + 0.666667 NA intron (NR_109897, intron 2 of 4) L1ME4a|LINE|L1 13539 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 195.667-20 chr2 7684423 7684905 + 0.666667 NA Intergenic Intergenic 214991 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 117.5-23 chr19 34604353 34604682 + 0.666667 NA intron (NR_027620, intron 1 of 3) MLT1H2|LTR|ERVL-MaLR -9932 NM_001025591 284402 Hs.656990 NM_001025591 ENSG00000205209 SCGB2B2 SCGB4A2|SCGBL secretoglobin family 2B member 2 protein-coding 187-23 chr20 52412523 52413059 + 0.666667 NA Intergenic MSTD|LTR|ERVL-MaLR -208047 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 139-17 chr15 72990536 72990788 + 0.666667 NA Intergenic MLT1J|LTR|ERVL-MaLR -61801 NM_002499 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 274-3 chr1 197127148 197127597 + 0.666667 NA intron (NM_001206846, intron 10 of 26) intron (NM_001206846, intron 10 of 26) 19297 NM_018136 259266 Hs.121028 NM_018136 ENSG00000066279 ASPM ASP|Calmbp1|MCPH5 abnormal spindle microtubule assembly protein-coding 133-94 chr8 84493271 84493776 + 0.666667 NA intron (NM_001354308, intron 2 of 9) L1PA10|LINE|L1 78039 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 146.333-76 chr4 145143398 145143886 + 0.666667 NA intron (NM_001366057, intron 16 of 20) intron (NM_001366057, intron 16 of 20) 34516 NM_017493 54726 Hs.270851 NM_017493 ENSG00000164164 OTUD4 DUBA6|HIN1|HSHIN1 OTU deubiquitinase 4 protein-coding 177.333-19 chr14 43132453 43132811 + 0.666667 NA Intergenic MLT1H|LTR|ERVL-MaLR 1374651 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 131.5-30 chr17 52814431 52814631 + 0.666667 NA Intergenic AluY|SINE|Alu -47590 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 149.167-32 chr2 223076953 223077474 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR 25283 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 168.667-42 chr2 195094436 195094823 + 0.666667 NA Intergenic L1PA16|LINE|L1 364034 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 234.333-20 chr3 61881670 61882080 + 0.666667 NA intron (NM_002841, intron 2 of 29) MER20|DNA|hAT-Charlie 320304 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 187.5-16 chr15 63649677 63650284 + 0.666667 NA intron (NM_003922, intron 53 of 77) intron (NM_003922, intron 53 of 77) -49153 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 130.333-83 chr7 16510679 16511012 + 0.666667 NA Intergenic Intergenic -15980 NM_001195280 100506049 Hs.278036 NM_001195280 ENSG00000205858 LRRC72 - leucine rich repeat containing 72 protein-coding 249.667-19 chr2 53206672 53207324 + 0.666667 NA Intergenic L1PA13|LINE|L1 -504383 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 189.667-38 chr4 53361075 53361702 + 0.666667 NA intron (NM_152540, intron 1 of 8) MIRc|SINE|MIR 4673 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 132.167-44 chr21 28769877 28770340 + 0.666667 NA Intergenic Intergenic 115259 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 209-10 chr10 57116934 57117388 + 0.666667 NA Intergenic Intergenic 187398 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 121.333-118 chr9 105994690 105995021 + 0.666667 NA Intergenic Intergenic 300314 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 176.5-62 chr7 138267726 138268048 + 0.666667 NA Intergenic Intergenic 144129 NR_039678 100616226 NR_039678 ENSG00000284028 MIR4468 - microRNA 4468 ncRNA 123.5-58 chr4 72431842 72432393 + 0.666667 NA intron (NM_014243, intron 3 of 21) MLT1J2|LTR|ERVL-MaLR 137104 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 176.5-13 chr12 13921940 13922428 + 0.666667 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 58172 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 175.833-17 chr18 34108161 34108424 + 0.666667 NA intron (NM_001353232, intron 2 of 9) L1MA4|LINE|L1 -59680 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 139.167-40 chr2 157413146 157413602 + 0.666667 NA Intergenic Intergenic 30715 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 154.667-18 chr12 121415161 121415458 + 0.666667 NA intron (NM_194271, intron 2 of 6) MIRb|SINE|MIR 15191 NM_194271 80196 Hs.292804 NM_025126 ENSG00000170633 RNF34 CARP-1|CARP1|RFI|RIF|RIFF|hRFI ring finger protein 34 protein-coding 115.333-21 chr13 20382395 20382861 + 0.666667 NA Intergenic Intergenic 51218 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 230.333-36 chr8 119442140 119442577 + 0.666667 NA Intergenic L2a|LINE|L2 25912 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 136.833-72 chr7 114364598 114365108 + 0.666667 NA intron (NR_033766, intron 2 of 19) intron (NR_033766, intron 2 of 19) -49962 NM_014491 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 125-72 chr6 48866996 48867426 + 0.666667 NA Intergenic Intergenic 596042 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 151.667-15 chr12 5652138 5652420 + 0.666667 NA intron (NM_001278596, intron 15 of 25) L1MC3|LINE|L1 158147 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 135-26 chr15 82057812 82058044 + 0.666667 NA Intergenic Intergenic -11910 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 185.167-7 chr12 1084260 1084777 + 0.666667 NA intron (NR_027948, intron 3 of 19) intron (NR_027948, intron 3 of 19) 56770 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 135.667-51 chr2 61957763 61958054 + 0.666667 NA intron (NM_152516, intron 1 of 2) L2a|LINE|L2 52266 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 125-84 chr7 55469270 55469509 + 0.666667 NA Intergenic Intergenic 57491 NM_001321251 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 150.833-15 chr17 42191919 42192443 + 0.666667 NA intron (NM_032484, intron 5 of 9) MIRb|SINE|MIR 2313 NM_032484 84514 Hs.38039 NM_032484 ENSG00000167925 GHDC D11LGP1|LGP1 GH3 domain containing protein-coding 142.333-22 chr11 103376753 103377109 + 0.666667 NA intron (NM_001377, intron 83 of 88) L1MA6|LINE|L1 267505 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 143.667-55 chr2 43761916 43762271 + 0.666667 NA intron (NM_172069, intron 27 of 29) MIRc|SINE|MIR -11946 NM_001348913 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 158.167-29 chr20 18509699 18510151 + 0.666667 NA intron (NM_001172745, intron 1 of 19) intron (NM_001172745, intron 1 of 19) 1985 NM_032985 10483 Hs.369373 NM_006363 ENSG00000101310 SEC23B CDA-II|CDAII|CDAN2|CWS7|HEMPAS|hSec23B SEC23 homolog B, coat complex II component protein-coding 136-59 chr4 148029830 148030056 + 0.666667 NA intron (NM_024605, intron 19 of 22) intron (NM_024605, intron 19 of 22) 247348 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 128-22 chr12 54400241 54400618 + 0.666667 NA intron (NM_002205, intron 25 of 29) L2a|LINE|L2 -9131 NM_001130968 25946 Hs.505653 NM_015481 ENSG00000161642 ZNF385A HZF|RZF|ZFP385|ZNF385 zinc finger protein 385A protein-coding 166-41 chr3 127802374 127802778 + 0.666667 NA intron (NM_001003794, intron 2 of 7) intron (NM_001003794, intron 2 of 7) 20306 NM_001256585 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 235.5-10 chr14 28086003 28086837 + 0.666667 NA Intergenic Intergenic -413199 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 172-43 chr3 22495579 22496085 + 0.666667 NA Intergenic (ATTAA)n|Simple_repeat|Simple_repeat 538693 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 118.333-56 chr2 171157900 171158282 + 0.666667 NA intron (NM_001136554, intron 1 of 20) intron (NM_001136554, intron 1 of 20) 2802 NM_012290 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 154.833-25 chr2 22058338 22058694 + 0.666667 NA Intergenic Intergenic -347864 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 116.333-88 chr5 170309887 170310143 + 0.666667 NA non-coding (NR_147701, exon 2 of 2) non-coding (NR_147701, exon 2 of 2) 2701 NR_147701 100128059 Hs.587351 NR_147701 ENSG00000250274 LOC100128059 - uncharacterized LOC100128059 ncRNA 175.667-48 chr4 82238392 82238690 + 0.666667 NA Intergenic AluSg|SINE|Alu 135450 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 194.833-13 chr2 194016432 194016810 + 0.666667 NA Intergenic Intergenic -327648 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 136.333-58 chr22 45775312 45775681 + 0.666667 NA intron (NM_013236, intron 9 of 11) intron (NM_013236, intron 9 of 11) 14972 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 132.667-93 chr8 78564750 78565121 + 0.666667 NA intron (NM_181839, intron 1 of 2) intron (NM_181839, intron 1 of 2) -6432 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 138.833-38 chr2 150750293 150750681 + 0.666667 NA Intergenic Intergenic 121590 NR_110245 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 116.667-85 chr4 106988840 106989136 + 0.666667 NA intron (NM_014421, intron 1 of 3) intron (NM_014421, intron 1 of 3) 47325 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 121.167-9 chr1 103142952 103143153 + 0.666667 NA Intergenic Intergenic -34530 NR_134980 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 114.667-68 chr20 56326806 56327057 + 0.666667 NA Intergenic Intergenic -32043 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 169.667-8 chr10 100183271 100183727 + 0.666667 NA intron (NR_144755, intron 2 of 11) intron (NR_144755, intron 2 of 11) 2530 NR_144755 10613 Hs.150087 NM_006459 ENSG00000107566 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 154.833-22 chr17 56289380 56289898 + 0.666667 NA intron (NM_001370326, intron 3 of 20) intron (NM_001370326, intron 3 of 20) 136164 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 130.334-2 chr13 38365529 38366055 + 0.666667 NA Intergenic Intergenic 15941 NM_001286706 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20|HLD14 ubiquitin fold modifier 1 protein-coding 153.167-8 chr10 99001988 99002271 + 0.666667 NA intron (NM_021828, intron 3 of 11) L1MC3|LINE|L1 -77561 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 169.333-29 chr18 2036803 2037179 + 0.666667 NA Intergenic Intergenic 534514 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 132-60 chr4 43741427 43741753 + 0.666667 NA Intergenic L1PREC2|LINE|L1 -249047 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 155.833-15 chr12 75237497 75238022 + 0.666667 NA intron (NR_149000, intron 1 of 1) L1MC3|LINE|L1 3019 NR_149000 100130268 Hs.524596 NR_149000 ENSG00000254451 LOC100130268 - uncharacterized LOC100130268 ncRNA 119.5-80 chr5 77068261 77068560 + 0.666667 NA Intergenic Intergenic 12161 NR_003014 677828 Hs.693249 NR_003014 ENSG00000238961 SNORA47 HBI-115 small nucleolar RNA, H/ACA box 47 snoRNA 147.333-87 chr8 71598396 71598833 + 0.666667 NA Intergenic L2a|LINE|L2 -50520 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 172.833-44 chr5 44340874 44341302 + 0.666667 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -47644 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 170.5-44 chr3 24993060 24993592 + 0.666667 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 164003 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 125.833-72 chr5 102999200 102999480 + 0.666667 NA intron (NM_001364590, intron 17 of 25) THE1C-int|LTR|ERVL-MaLR 120798 NM_001317954 54826 Hs.24088 NM_017676 ENSG00000145723 GIN1 GIN-1|TGIN1|ZH2C2 gypsy retrotransposon integrase 1 protein-coding 215.833-23 chr8 120902561 120903104 + 0.666667 NA Intergenic Intergenic -90786 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 225.5-13 chr12 111900561 111901068 + 0.666667 NA non-coding (NR_036636, exon 1 of 1) non-coding (NR_036636, exon 1 of 1) 1751 NR_036636 8759 Hs.661708 NR_036636 ADAM1A ADAM1|ADAM1P|FTNAP|Ftna|PH-30a ADAM metallopeptidase domain 1A (pseudogene) pseudo 154.833-30 chr2 155986485 155986912 + 0.666667 NA Intergenic Intergenic 268233 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 119-69 chr4 15510668 15510910 + 0.666667 NA intron (NM_001080522, intron 8 of 37) intron (NM_001080522, intron 8 of 37) 40907 NM_001164720 57545 Hs.590928 NM_020785 ENSG00000048342 CC2D2A JBTS9|MKS6 coiled-coil and C2 domain containing 2A protein-coding 114-83 chr5 158821647 158821914 + 0.666667 NA intron (NM_001324107, intron 8 of 15) intron (NM_001324107, intron 8 of 15) 276176 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 207.334-6 chr6 168731839 168732509 + 0.666667 NA Intergenic Intergenic 232208 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 134-15 chr10 29411367 29411693 + 0.666667 NA intron (NR_110928, intron 1 of 2) MADE2|DNA|TcMar-Mariner 1287 NR_110928 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 116.667-69 chr22 35265562 35265760 + 0.666667 NA intron (NM_001003681, intron 5 of 10) intron (NM_001003681, intron 5 of 10) 8168 NM_001362972 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 219.833-3 chr10 22962873 22963384 + 0.666667 NA intron (NM_001282745, intron 7 of 18) intron (NM_001282745, intron 7 of 18) 35075 NM_001282746 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 165.5-46 chr5 94688516 94689013 + 0.666667 NA intron (NM_032290, intron 17 of 20) intron (NM_032290, intron 17 of 20) 70095 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 179.333-8 chr11 37227105 37227491 + 0.666667 NA Intergenic Intergenic -629019 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 179.667-58 chr9 34983579 34983906 + 0.666667 NA Intergenic Intergenic 5637 NR_109756 101926900 Hs.545814 NR_109756 ENSG00000281491 DNAJB5-DT DNAJB5-AS1 DNAJB5 divergent transcript ncRNA 120-36 chr14 72218427 72218776 + 0.666667 NA intron (NM_001370288, intron 2 of 16) Tigger17a|DNA|TcMar-Tigger 285074 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 150.5-64 chr5 65356700 65356942 + 0.666667 NA intron (NR_135689, intron 7 of 25) intron (NR_135689, intron 7 of 25) 125099 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 149.5-29 chr17 40641296 40641749 + 0.666667 NA intron (NM_003079, intron 4 of 10) intron (NM_003079, intron 4 of 10) 6296 NM_003079 6605 Hs.743978 NM_003079 ENSG00000073584 SMARCE1 BAF57|CSS5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding 240-6 chr11 89446913 89447537 + 0.666667 NA intron (NM_001143837, intron 7 of 20) intron (NM_001143837, intron 7 of 20) 43535 NM_001291929 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 133.167-62 chr7 54120905 54121403 + 0.666667 NA Intergenic Intergenic -209543 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 134.667-83 chr5 31172560 31172884 + 0.666667 NA Intergenic Intergenic -20964 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 121-55 chr20 31060259 31060698 + 0.666667 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -197186 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 255.5-3 chr10 53163374 53164075 + 0.666667 NA Intergenic Intergenic -392024 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 194.167-5 chr10 75607443 75608112 + 0.666667 NA intron (NM_001305581, intron 2 of 6) MER5B|DNA|hAT-Charlie -39732 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 141.167-17 chr12 14203135 14203487 + 0.666667 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -162321 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 136.667-15 chr12 12979159 12979528 + 0.666667 NA promoter-TSS (NR_038920) promoter-TSS (NR_038920) -494 NR_038920 100506314 Hs.127718 NR_038920 ENSG00000247498 GPRC5D-AS1 - GPRC5D and HEBP1 antisense RNA 1 ncRNA 129.333-8 chr10 51452274 51452575 + 0.666667 NA intron (NM_001098512, intron 2 of 17) L1PB2|LINE|L1 152851 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 135-61 chr3 139211199 139211598 + 0.666667 NA Intergenic L1M3|LINE|L1 22124 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 197.333-16 chr14 59321455 59321887 + 0.666667 NA intron (NM_001270520, intron 5 of 24) intron (NM_001270520, intron 5 of 24) 58230 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 170.334-10 chr6 142208220 142208752 + 0.666667 NA intron (NM_016485, intron 7 of 7) L1MA4|LINE|L1 61223 NM_016485 51534 Hs.431367 NM_016485 ENSG00000009844 VTA1 C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1 vesicle trafficking 1 protein-coding 133.5-61 chr5 119607359 119607670 + 0.666667 NA Intergenic Intergenic -22044 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 174.333-72 chr8 124450507 124450877 + 0.666667 NA promoter-TSS (NM_017956) promoter-TSS (NM_017956) -128 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 120.333-125 chr9 78486406 78486694 + 0.666667 NA Intergenic MER94|DNA|hAT-Blackjack 189425 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 165-22 chr18 781170 781715 + 0.666667 NA intron (NM_005433, intron 1 of 11) L2b|LINE|L2 30800 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 173.333-48 chr4 85886414 85886750 + 0.666667 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) -43434 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 118.333-101 chr6 167478199 167478469 + 0.666667 NA Intergenic Intergenic -5544 NR_134591 105378127 Hs.58456 NR_134591 LOC105378127 - uncharacterized LOC105378127 ncRNA 129-85 chr6 62234266 62234555 + 0.666667 NA intron (NR_146874, intron 1 of 13) L2c|LINE|L2 51815 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 146-15 chr12 42054355 42054731 + 0.666667 NA Intergenic Intergenic 90331 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 172.333-22 chr15 68622914 68623291 + 0.666667 NA intron (NM_001190456, intron 1 of 11) AluSx1|SINE|Alu 6562 NM_001190456 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 213-16 chr2 24611913 24612360 + 0.666667 NA intron (NM_001362950, intron 3 of 23) L1PA15-16|LINE|L1 27659 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 192.167-42 chr7 124685214 124685600 + 0.666667 NA Intergenic L1MB1|LINE|L1 80385 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 167-62 chr8 113685610 113686074 + 0.666667 NA Intergenic Intergenic -248903 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 253-7 chr12 6134629 6135123 + 0.666667 NA Intergenic AluJb|SINE|Alu -10201 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 162.667-57 chr4 116654924 116655245 + 0.666667 NA Intergenic HAL1|LINE|L1 355359 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 129.333-12 chr11 11231546 11231814 + 0.666667 NA Intergenic Intergenic 121570 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 132.5-23 chr13 97746631 97747059 + 0.666667 NA Intergenic Intergenic -206830 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 203.333-35 chr4 91076893 91077471 + 0.666667 NA intron (NM_001145065, intron 9 of 10) L1MEc|LINE|L1 842151 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 122.5-52 chr20 8945076 8945283 + 0.666667 NA Intergenic Intergenic 113994 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 117-68 chr21 40938932 40939162 + 0.666667 NA Intergenic Intergenic -91889 NM_001271534 1826 Hs.160418 NM_001389 ENSG00000171587 DSCAM CHD2|CHD2-42|CHD2-52 DS cell adhesion molecule protein-coding 192-29 chr3 31781228 31781771 + 0.666667 NA intron (NM_001174060, intron 3 of 10) L1PB1|LINE|L1 77286 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 139.333-86 chr6 103543453 103543713 + 0.666667 NA Intergenic Intergenic 1315963 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 117-90 chr5 72841477 72841789 + 0.666667 NA intron (NM_001364292, intron 1 of 24) AluSg|SINE|Alu -6506 NM_001364293 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 140.167-61 chr6 42883533 42883850 + 0.666667 NA intron (NM_198486, intron 3 of 6) intron (NM_198486, intron 3 of 6) 4075 NM_198486 285855 Hs.520133 NM_198486 ENSG00000146223 RPL7L1 dJ475N16.4 ribosomal protein L7 like 1 protein-coding 157-9 chr10 8012972 8013372 + 0.666667 NA intron (NM_031923, intron 5 of 6) intron (NM_031923, intron 5 of 6) 39319 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 117-49 chr2 63278980 63279380 + 0.666667 NA intron (NR_148704, intron 14 of 18) L1PB1|LINE|L1 158827 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 174-8 chr10 75813334 75813663 + 0.666667 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 30737 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 190.667-13 chr14 65396153 65396594 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR -14219 NM_004480 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 154-22 chr14 54135145 54135459 + 0.666667 NA Intergenic MLT1G1|LTR|ERVL-MaLR -178411 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 136.167-23 chr15 89884833 89885135 + 0.666667 NA promoter-TSS (NR_049807) promoter-TSS (NR_049807) -954 NR_049807 100846993 NR_049807 ENSG00000264796 MIR5009 - microRNA 5009 ncRNA 116-34 chr16 14173022 14173233 + 0.666667 NA intron (NM_001308142, intron 3 of 16) intron (NM_001308142, intron 3 of 16) -13559 NM_001365415 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 237-20 chr8 40533838 40534464 + 0.666667 NA intron (NM_024645, intron 6 of 6) intron (NM_024645, intron 6 of 6) -190788 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 180.167-51 chr7 25242645 25243048 + 0.666667 NA Intergenic Intergenic -14360 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 129.333-46 chr2 76288538 76288832 + 0.666667 NA Intergenic LTR78B|LTR|ERV1 -577770 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 134.833-65 chr8 107034420 107034775 + 0.666667 NA Intergenic L1MA8|LINE|L1 -264353 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 175.667-6 chr1 182151349 182151718 + 0.666667 NA Intergenic MIRc|SINE|MIR -89821 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 185-51 chr8 85852636 85853050 + 0.666667 NA Intergenic MER65A|LTR|ERV1 -24901 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 188-5 chr10 6414053 6414545 + 0.666667 NA intron (NM_001323267, intron 17 of 17) L1MEc|LINE|L1 63983 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 135.833-47 chr3 70151678 70151918 + 0.666667 NA Intergenic Intergenic 152054 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 117.667-83 chr3 165057653 165057967 + 0.666667 NA intron (NM_001041, intron 12 of 47) L1M1|LINE|L1 20686 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 160.667-62 chr4 47434262 47434523 + 0.666667 NA Intergenic Intergenic 29310 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 135.167-14 chr10 83438483 83438880 + 0.666667 NA Intergenic MER101-int|LTR|ERV1 238408 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 233.167-18 chr18 64046584 64047016 + 0.666667 NA Intergenic Intergenic -57291 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 192.5-12 chr13 105988350 105988897 + 0.666667 NA Intergenic MSTA|LTR|ERVL-MaLR 281793 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 168.167-47 chr5 129393824 129394144 + 0.666667 NA Intergenic Intergenic 3163 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 326.5 chr1 91542492 91543054 + 0.666667 NA Intergenic AluJr|SINE|Alu 41665 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 170.667-75 chr8 15351139 15351534 + 0.666667 NA Intergenic L1ME3A|LINE|L1 -112905 NM_001322881 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 133.833-48 chr3 120768195 120768463 + 0.666667 NA intron (NM_005513, intron 2 of 4) L2a|LINE|L2 25585 NM_005513 2960 Hs.445272 NM_005513 ENSG00000153767 GTF2E1 FE|TF2E1|TFIIE-A general transcription factor IIE subunit 1 protein-coding 211.667-21 chr2 166483180 166483913 + 0.666667 NA intron (NR_045628, intron 1 of 25) intron (NR_045628, intron 1 of 25) 3425 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 144.333-72 chr5 103978647 103978947 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -416008 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 204-25 chr3 102957286 102957863 + 0.666667 NA Intergenic MER89-int|LTR|ERV1 522559 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 144.333-56 chr3 2936430 2936693 + 0.666667 NA intron (NM_175607, intron 13 of 24) L2|LINE|L2 44346 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 177.333-31 chr2 16134373 16134732 + 0.666667 NA Intergenic Intergenic 84125 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 150.333-17 chr10 96610617 96611002 + 0.666667 NA intron (NM_152309, intron 13 of 16) intron (NM_152309, intron 13 of 16) -23797 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 126.833-31 chr15 36630669 36631039 + 0.666667 NA intron (NM_001290232, intron 1 of 10) MSTB1|LTR|ERVL-MaLR 35977 NM_032499 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 116.333-41 chr16 17147223 17147426 + 0.666667 NA intron (NM_022166, intron 6 of 11) intron (NM_022166, intron 6 of 11) 12820 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 287.5-9 chr2 18434252 18434924 + 0.666667 NA Intergenic Intergenic 126065 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 161.333-15 chr12 38727428 38727710 + 0.666667 NA intron (NM_153634, intron 11 of 19) L1M4|LINE|L1 178022 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 124.5-37 chr2 134942768 134943122 + 0.666667 NA intron (NM_001241, intron 5 of 9) intron (NM_001241, intron 5 of 9) 24123 NM_058241 905 Hs.744115 NM_001241 ENSG00000082258 CCNT2 CYCT2 cyclin T2 protein-coding 148.5-75 chr9 76057241 76057647 + 0.666667 NA intron (NR_120409, intron 5 of 19) intron (NR_120409, intron 5 of 19) 166771 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 187.167-35 chr6 35427525 35428113 + 0.666667 NA 3' UTR (NM_001171819, exon 7 of 7) 3' UTR (NM_001171819, exon 7 of 7) -24542 NM_021922 2178 Hs.302003 NM_021922 ENSG00000112039 FANCE FACE|FAE FA complementation group E protein-coding 139-3 chr10 33257123 33257471 + 0.666667 NA intron (NM_001244973, intron 4 of 16) intron (NM_001244973, intron 4 of 16) 77370 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 225-27 chr4 124102678 124103316 + 0.666667 NA Intergenic L1PA16|LINE|L1 328733 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 123.167-56 chr20 53008711 53008910 + 0.666667 NA intron (NM_173485, intron 1 of 2) Tigger7|DNA|TcMar-Tigger 36452 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 126.5 chr1 158718323 158718540 + 0.666667 NA promoter-TSS (NM_001005327) promoter-TSS (NM_001005327) -316 NM_001005327 391114 Hs.554488 NM_001005327 ENSG00000203757 OR6K3 OR1-18 olfactory receptor family 6 subfamily K member 3 protein-coding 153.667-55 chr4 32325359 32325643 + 0.666667 NA Intergenic Intergenic -25537 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 240.333-12 chr17 60277862 60278437 + 0.666667 NA intron (NM_032582, intron 5 of 33) AluJr|SINE|Alu -46504 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 249-15 chr4 146333975 146334587 + 0.666667 NA intron (NM_001317816, intron 4 of 10) L2b|LINE|L2 -74302 NR_107003 102465837 NR_107003 ENSG00000278438 MIR7849 hsa-mir-7849 microRNA 7849 ncRNA 124.667-84 chr4 32882392 32882731 + 0.666667 NA Intergenic Intergenic 531523 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 164.667-71 chr7 104504313 104504707 + 0.666667 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 175854 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 137.833-55 chr8 130714134 130714403 + 0.666667 NA Intergenic L1ME2|LINE|L1 -270594 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 147.667-26 chr16 71658046 71658417 + 0.666667 NA intron (NM_015020, intron 15 of 18) intron (NM_015020, intron 15 of 18) 32047 NM_052858 91862 Hs.513706 NM_052858 ENSG00000140832 MARVELD3 MARVD3|MRVLDC3 MARVEL domain containing 3 protein-coding 154.333-16 chr12 10016500 10016851 + 0.666667 NA 3' UTR (NM_205852, exon 5 of 5) 3' UTR (NM_205852, exon 5 of 5) 6048 NM_001319241 387837 Hs.127937 NM_205852 ENSG00000256660 CLEC12B UNQ5782 C-type lectin domain family 12 member B protein-coding 150-84 chr8 123616936 123617301 + 0.666667 NA Intergenic Intergenic 36683 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 134.167-41 chr2 45676540 45676767 + 0.666667 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 24978 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 117.333-47 chr2 77722810 77723092 + 0.666667 NA Intergenic L1PA13|LINE|L1 -192983 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 251-31 chr9 17708966 17709558 + 0.666667 NA intron (NM_003026, intron 1 of 8) intron (NM_003026, intron 1 of 8) 130196 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 198.5-15 chr16 74841953 74842423 + 0.666667 NA Intergenic AluJo|SINE|Alu -67368 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 125.833-58 chr3 84077369 84077766 + 0.666667 NA Intergenic Intergenic 792008 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 128-20 chr12 2136908 2137250 + 0.666667 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 83794 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 193.167-13 chr11 35713400 35713992 + 0.666667 NA intron (NM_017583, intron 2 of 4) intron (NM_017583, intron 2 of 4) 50921 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 143.667-18 chr10 105615173 105615448 + 0.666667 NA Intergenic Intergenic 205023 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 126.5-8 chr10 114951432 114951864 + 0.666667 NA intron (NM_139169, intron 3 of 7) intron (NM_139169, intron 3 of 7) 13453 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 121.167-42 chr2 120450579 120451023 + 0.666667 NA Intergenic Intergenic 15548 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 166.5-61 chr8 116617690 116618204 + 0.666667 NA Intergenic AluSx|SINE|Alu -34153 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 122.333-56 chr2 197174515 197174728 + 0.666667 NA intron (NM_153697, intron 2 of 9) L1ME3Cz|LINE|L1 -23370 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 120.667-47 chr16 4124848 4125204 + 0.666667 NA Intergenic Intergenic -8584 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 142.833-63 chr6 11319924 11320270 + 0.666667 NA intron (NR_073131, intron 1 of 9) intron (NR_073131, intron 1 of 9) 62251 NR_073131 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 118.5-6 chr1 89193855 89194220 + 0.666667 NA intron (NM_052941, intron 3 of 10) intron (NM_052941, intron 3 of 10) 4905 NM_052941 115361 Hs.409925 NM_052941 ENSG00000162654 GBP4 Mpa2 guanylate binding protein 4 protein-coding 232-13 chr15 53073808 53074245 + 0.666667 NA Intergenic FLAM_C|SINE|Alu -42339 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 245.333-10 chr2 178500773 178501326 + 0.666667 NA intron (NM_019091, intron 6 of 7) intron (NM_019091, intron 6 of 7) 20592 NM_019091 65977 Hs.41086 NM_019091 ENSG00000116095 PLEKHA3 FAPP1 pleckstrin homology domain containing A3 protein-coding 159.333-16 chr10 102230039 102230491 + 0.666667 NA TTS (NM_005029) TTS (NM_005029) 3966 NM_152310 83401 Hs.302130 NM_152310 ENSG00000119915 ELOVL3 CIG-30|CIG30 ELOVL fatty acid elongase 3 protein-coding 132.5-85 chr6 152374210 152374698 + 0.666667 NA intron (NM_182961, intron 58 of 145) L4_A_Mam|LINE|RTE-X -6076 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 123.167-70 chr4 45930007 45930237 + 0.666667 NA Intergenic MER45R|DNA|hAT-Tip100 193932 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 120.667-73 chr22 24110734 24111021 + 0.666667 NA intron (NM_012295, intron 26 of 36) L1MCc|LINE|L1 -70610 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 149.167-23 chr15 61877557 61878072 + 0.666667 NA intron (NM_001018088, intron 74 of 81) intron (NM_001018088, intron 74 of 81) 147896 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 150-68 chr6 34772401 34772799 + 0.666667 NA intron (NR_029472, intron 4 of 4) intron (NR_029472, intron 4 of 4) 15095 NM_003093 6631 Hs.1063 NM_003093 ENSG00000124562 SNRPC U1C|Yhc1 small nuclear ribonucleoprotein polypeptide C protein-coding 187-37 chr5 163688738 163689138 + 0.666667 NA Intergenic L1MA9|LINE|L1 183319 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 147-75 chr6 106238875 106239148 + 0.666667 NA intron (NR_104402, intron 4 of 5) intron (NR_104402, intron 4 of 5) 77255 NR_104402 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 128-43 chr2 16781092 16781519 + 0.666667 NA Intergenic Intergenic -115471 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 174.333-43 chr5 21028510 21028997 + 0.666667 NA Intergenic Intergenic -413218 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 183.5-52 chr5 135171772 135172366 + 0.666667 NA intron (NR_161235, intron 2 of 5) L1MA6|LINE|L1 76108 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 168.333-10 chr12 14328004 14328277 + 0.666667 NA Intergenic LTR33C|LTR|ERVL -37492 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 302.5 chr14 92056170 92056889 + 0.666667 NA Intergenic L1MB3|LINE|L1 -16470 NM_004239 9321 Hs.632339 NM_004239 ENSG00000100815 TRIP11 ACG1A|CEV14|GMAP-210|GMAP210|ODCD|TRIP-11|TRIP230 thyroid hormone receptor interactor 11 protein-coding 196.667-59 chr9 83653232 83653688 + 0.666667 NA Intergenic L1MB5|LINE|L1 30317 NM_001351535 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK gluconokinase protein-coding 171.333-63 chr8 111557675 111558126 + 0.666667 NA Intergenic Intergenic 181261 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 141-78 chr6 95773523 95773790 + 0.666667 NA Intergenic Intergenic 196121 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 129.5-89 chr8 121512277 121512602 + 0.666667 NA Intergenic HERVL74-int|LTR|ERVL -126907 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 144.333-58 chr3 37116526 37116798 + 0.666667 NA intron (NM_006309, intron 6 of 27) intron (NM_006309, intron 6 of 27) 57920 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 167.667-72 chr5 76530382 76530686 + 0.666667 NA intron (NM_006633, intron 2 of 35) intron (NM_006633, intron 2 of 35) -16875 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 160-9 chr1 230942145 230942701 + 0.666667 NA intron (NM_001122835, intron 4 of 20) intron (NM_001122835, intron 4 of 20) 36438 NM_001122835 79573 Hs.424788 NM_024525 ENSG00000143643 TTC13 - tetratricopeptide repeat domain 13 protein-coding 169-20 chr16 35267173 35267540 + 0.666667 NA Intergenic Intergenic 71597 NR_157261 112268173 Hs.369226 NR_157261 LOC112268173 - uncharacterized LOC112268173 ncRNA 181.833-8 chr11 13402903 13403394 + 0.666667 NA intron (NM_032320, intron 8 of 8) intron (NM_032320, intron 8 of 8) 37131 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 156.833 chr1 102335726 102336171 + 0.666667 NA Intergenic Intergenic -338714 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 128-68 chr4 82912897 82913269 + 0.666667 NA intron (NM_001317776, intron 5 of 5) intron (NM_001317776, intron 5 of 5) -12167 NR_034076 100499177 Hs.728916 NR_034075 ENSG00000251022 THAP9-AS1 - THAP9 antisense RNA 1 ncRNA 131.333-60 chr20 34561494 34561722 + 0.666667 NA intron (NM_080476, intron 11 of 11) L2b|LINE|L2 2890 NM_032514 84557 Hs.632273 NM_032514 ENSG00000101460 MAP1LC3A ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3 microtubule associated protein 1 light chain 3 alpha protein-coding 134.667-25 chr14 43443865 43444142 + 0.666667 NA Intergenic L1MA6|LINE|L1 1063280 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 158.667-91 chr8 120795067 120795499 + 0.666667 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) 16763 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 210.667-18 chr16 75661197 75661700 + 0.666667 NA Intergenic Intergenic 13675 NM_018975 54386 Hs.301419 NM_018975 ENSG00000166848 TERF2IP DRIP5|RAP1 TERF2 interacting protein protein-coding 236.667-18 chr2 117922323 117923048 + 0.666667 NA intron (NM_019044, intron 23 of 23) intron (NM_019044, intron 23 of 23) 88954 NR_158150 107985939 NR_158150 LOC107985939 - uncharacterized LOC107985939 ncRNA 200-13 chr13 41488027 41488563 + 0.666667 NA Intergenic L1M1|LINE|L1 30745 NM_014059 28984 Hs.507866 NM_014059 ENSG00000102760 RGCC C13orf15|RGC-32|RGC32|bA157L14.2 regulator of cell cycle protein-coding 129-96 chr8 78622488 78622774 + 0.666667 NA Intergenic Intergenic -43458 NM_016010 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 151.333-10 chr10 59414885 59415287 + 0.666667 NA Intergenic L1MA2|LINE|L1 -51905 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 177.333-4 chr1 216982516 216982944 + 0.666667 NA intron (NM_001134285, intron 1 of 8) intron (NM_001134285, intron 1 of 8) -43057 NM_001243512 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 205.5-32 chr4 91017459 91017816 + 0.666667 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 782606 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 121-70 chr5 88928161 88928505 + 0.666667 NA intron (NR_109941, intron 3 of 3) intron (NR_109941, intron 3 of 3) -24228 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 139-15 chr14 54473675 54474012 + 0.666667 NA TTS (NM_004124) TTS (NM_004124) 15137 NM_004124 2764 Hs.151413 NM_004124 ENSG00000197045 GMFB GMF glia maturation factor beta protein-coding 115-32 chr16 68962202 68962460 + 0.666667 NA intron (NM_024562, intron 14 of 17) intron (NM_024562, intron 14 of 17) 118800 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 130-18 chr10 97084394 97084820 + 0.666667 NA intron (NM_003061, intron 4 of 36) (TTTCT)n|Simple_repeat|Simple_repeat -18149 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 131.667-104 chr5 124671071 124671597 + 0.666667 NA intron (NM_020747, intron 2 of 8) intron (NM_020747, intron 2 of 8) 73778 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 166.333-7 chr10 33033635 33034029 + 0.666667 NA Intergenic AluSx1|SINE|Alu -75602 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 150.333-51 chr2 13873315 13873575 + 0.666667 NA Intergenic Intergenic 527513 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 135.667-82 chr5 13032794 13033138 + 0.666667 NA promoter-TSS (NR_147005) promoter-TSS (NR_147005) -80 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 246.167 chr1 186314183 186314861 + 0.666667 NA TTS (NM_001127709) TTS (NM_001127709) 18249 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 170.5-4 chr1 183299079 183299558 + 0.666667 NA intron (NM_015039, intron 1 of 10) AluSz|SINE|Alu 5556 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 147.167-9 chr1 247561406 247561758 + 0.666667 NA intron (NM_145278, intron 2 of 4) intron (NM_145278, intron 2 of 4) 12448 NM_145278 148823 Hs.732113 NM_145278 ENSG00000169224 GCSAML C1orf150 germinal center associated signaling and motility like protein-coding 150-46 chr20 43693656 43694028 + 0.666667 NA intron (NM_001278610, intron 5 of 12) AluJb|SINE|Alu 26728 NM_002466 4605 Hs.179718 NM_002466 ENSG00000101057 MYBL2 B-MYB|BMYB MYB proto-oncogene like 2 protein-coding 178.333-3 chr1 151546090 151546589 + 0.666667 NA TTS (NR_030280) TTS (NR_030280) 543 NR_030280 693139 NR_030280 ENSG00000207606 MIR554 MIRN554|hsa-mir-554 microRNA 554 ncRNA 223.833-21 chr5 87016683 87017342 + 0.666667 NA Intergenic AluJr|SINE|Alu 97942 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 144.833-54 chr4 38370651 38371070 + 0.666667 NA intron (NR_149123, intron 1 of 1) MER3|DNA|hAT-Charlie 3946 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 188.667-30 chr20 57074784 57075258 + 0.666667 NA Intergenic MLT1C|LTR|ERVL-MaLR -138675 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 169.333-3 chr1 77432933 77433313 + 0.666667 NA intron (NM_012093, intron 8 of 13) MER65-int|LTR|ERV1 150036 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 255-3 chr10 65291871 65292290 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -279345 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 209.5-11 chr14 63149354 63150096 + 0.666667 NA Intergenic L1MA5|LINE|L1 -54718 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 132.667-23 chr12 80800821 80801155 + 0.666667 NA intron (NM_004664, intron 5 of 5) intron (NM_004664, intron 5 of 5) 31641 NR_030348 693202 NR_030348 ENSG00000207763 MIR617 MIRN617|hsa-mir-617 microRNA 617 ncRNA 140.667-93 chr9 94297754 94298046 + 0.666667 NA intron (NM_194320, intron 4 of 4) AluSz|SINE|Alu 30744 NM_017561 54754 Hs.648183 NM_017561 ENSG00000130950 NUTM2F FAM22F|NUTMF NUT family member 2F protein-coding 214.667-8 chr11 23804035 23804568 + 0.666667 NA Intergenic Intergenic -385111 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 136.667-13 chr10 106522025 106522439 + 0.666667 NA Intergenic Intergenic 382067 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 122.5-98 chr8 78501085 78501385 + 0.666667 NA Intergenic MSTA|LTR|ERVL-MaLR -15105 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 191.667-57 chr8 133981416 133981901 + 0.666667 NA Intergenic Intergenic 95162 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 204.5-43 chr8 124879557 124880014 + 0.666667 NA Intergenic Intergenic -57727 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 139.333-47 chr18 4308776 4309129 + 0.666667 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 44350 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 121.667-91 chr7 119640504 119640766 + 0.666667 NA intron (NR_131960, intron 4 of 4) intron (NR_131960, intron 4 of 4) 266740 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 128.5-84 chr9 8301623 8301991 + 0.666667 NA Intergenic MER2|DNA|TcMar-Tigger 432139 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 187.167-19 chr2 81640383 81640779 + 0.666667 NA Intergenic L1MA2|LINE|L1 -173635 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 122-99 chrX 80575581 80575856 + 0.666667 NA Intergenic L1PREC2|LINE|L1 155271 NM_152630 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 118.333-42 chr16 63026579 63026852 + 0.666667 NA Intergenic Intergenic -990277 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 188.167-40 chr5 104623476 104624105 + 0.666667 NA Intergenic Intergenic -475684 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 137.333-51 chr2 119062713 119062927 + 0.666667 NA Intergenic Intergenic 95931 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 184.333-23 chr2 9416726 9417126 + 0.666667 NA intron (NR_134953, intron 1 of 4) L2a|LINE|L2 5665 NM_001319068 9270 Hs.467662 NM_004763 ENSG00000119185 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin subunit beta 1 binding protein 1 protein-coding 153.5-78 chr8 100442399 100442797 + 0.666667 NA Intergenic AluSx1|SINE|Alu 59835 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 207-51 chr8 110197089 110197410 + 0.666667 NA Intergenic Intergenic -221478 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 114.167-104 chrX 80876785 80877205 + 0.666667 NA Intergenic Intergenic -67118 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 126.5-30 chr15 44502020 44502277 + 0.666667 NA intron (NM_016396, intron 8 of 12) L1MB5|LINE|L1 34752 NR_034171 645212 Hs.594287 NR_034170 EIF3J-DT EIF3J-AS1 EIF3J divergent transcript ncRNA 315.834 chr1 191388776 191389582 + 0.666667 NA Intergenic L1MA10|LINE|L1 -160681 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 149.667-67 chr6 54443826 54444259 + 0.666667 NA Intergenic LTR32|LTR|ERVL 135601 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 143.5-78 chr7 33049410 33049909 + 0.666667 NA intron (NM_001002009, intron 1 of 9) intron (NM_001002009, intron 1 of 9) -8494 NM_001166118 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 114.333-77 chr20 31790356 31790552 + 0.666667 NA intron (NM_012112, intron 12 of 17) MARNA|DNA|TcMar-Mariner -28921 NM_033118 85366 Hs.86092 NM_033118 ENSG00000101306 MYLK2 KMLC|MLCK|MLCK2|skMLCK myosin light chain kinase 2 protein-coding 149.333-87 chr7 3810308 3810677 + 0.666667 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -319193 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 232-21 chr4 37119872 37120436 + 0.666667 NA Intergenic L2|LINE|L2 118375 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 136.333-31 chr15 69188007 69188374 + 0.666667 NA intron (NM_001324093, intron 2 of 5) AluSx3|SINE|Alu 27555 NM_001324092 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 209.333-6 chr10 122252797 122253282 + 0.666667 NA intron (NM_206862, intron 22 of 22) intron (NM_206862, intron 22 of 22) -18257 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 120-90 chr5 44218715 44219036 + 0.666667 NA Intergenic L1M5|LINE|L1 -169857 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 195-40 chr5 178672102 178672542 + 0.666667 NA Intergenic L1MEg2|LINE|L1 -45272 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 113.333-71 chr3 19355777 19356058 + 0.666667 NA intron (NM_144633, intron 5 of 15) intron (NM_144633, intron 5 of 15) -40986 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 134.333-78 chr3 145654043 145654564 + 0.666667 NA Intergenic L1MC1|LINE|L1 414882 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 139.333-22 chr11 47855028 47855287 + 0.666667 NA Intergenic AluSx|SINE|Alu -6613 NM_001318399 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 183.167-10 chr11 30165390 30165996 + 0.666667 NA Intergenic L2c|LINE|L2 -65321 NM_000510 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 165.5-16 chr13 72212922 72213229 + 0.666667 NA Intergenic Intergenic -345871 NM_001366712 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 133-16 chr11 74208975 74209270 + 0.666667 NA intron (NM_001271593, intron 3 of 13) AluJr|SINE|Alu 37833 NM_001271593 51400 Hs.503251 NM_016147 ENSG00000214517 PPME1 ABDH19|PME-1 protein phosphatase methylesterase 1 protein-coding 161.667-11 chr1 194575953 194576251 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger 1271357 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 153.833-23 chr14 75169540 75169949 + 0.666667 NA intron (NM_006827, intron 1 of 4) MLT1M|LTR|ERVL-MaLR 6868 NM_006827 10972 Hs.74137 NM_006827 ENSG00000170348 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1 transmembrane p24 trafficking protein 10 protein-coding 139-18 chr15 77209719 77210127 + 0.666667 NA intron (NM_024776, intron 4 of 7) MLT1D|LTR|ERVL-MaLR 15481 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 160.667-28 chr15 94739199 94739667 + 0.666667 NA Intergenic MIRc|SINE|MIR -115930 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 181.333-25 chr17 71359656 71360169 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR -157733 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 154.333-12 chr10 97228157 97228537 + 0.666667 NA intron (NM_032900, intron 11 of 11) intron (NM_032900, intron 11 of 11) 42310 NM_001256423 84986 Hs.80305 NM_032900 ENSG00000213390 ARHGAP19 - Rho GTPase activating protein 19 protein-coding 162.667-78 chr7 46005588 46005944 + 0.666667 NA Intergenic Intergenic -84494 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 115.667-74 chr3 103041021 103041331 + 0.666667 NA Intergenic Intergenic 482940 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 223.667-11 chr18 933452 933939 + 0.666667 NA Intergenic Intergenic -5702 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 119.167-91 chr8 21281120 21281451 + 0.666667 NA Intergenic LTR16B2|LTR|ERVL -16954 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 141.167-21 chr12 129968294 129968639 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR -64441 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 115.667-57 chr2 158586595 158586879 + 0.666667 NA intron (NM_001005476, intron 3 of 20) intron (NM_001005476, intron 3 of 20) 129785 NM_003628 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 252.167-16 chr7 112110135 112110785 + 0.666667 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 95939 NM_014705 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 118.167-54 chr5 83777287 83777576 + 0.666667 NA Intergenic Intergenic -56576 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 160.5-6 chr10 82552036 82552482 + 0.666667 NA intron (NR_163253, intron 3 of 10) L1MC5|LINE|L1 -319339 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 123.667-16 chr10 96718111 96718333 + 0.666667 NA intron (NM_152309, intron 1 of 16) L1MB8|LINE|L1 2292 NM_152309 118788 Hs.310456 NM_152309 ENSG00000155629 PIK3AP1 BCAP phosphoinositide-3-kinase adaptor protein 1 protein-coding 152-11 chr10 56169009 56169384 + 0.666667 NA Intergenic L1M5|LINE|L1 192063 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 181-20 chr12 118297737 118298175 + 0.666667 NA intron (NM_001346490, intron 1 of 21) AluJr4|SINE|Alu 61749 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 127-84 chr5 170822234 170822447 + 0.666667 NA Intergenic Intergenic 38615 NM_014211 2568 Hs.26225 NM_014211 ENSG00000094755 GABRP - gamma-aminobutyric acid type A receptor pi subunit protein-coding 147-65 chr5 26845715 26846086 + 0.666667 NA Intergenic MER67C|LTR|ERV1 192686 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 117-121 chr8 87520325 87520707 + 0.666667 NA Intergenic L1MC2|LINE|L1 353499 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 136.833-2 chr1 170768998 170769229 + 0.666667 NA Intergenic Intergenic 104982 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 220-11 chr18 41220984 41221498 + 0.666667 NA Intergenic Intergenic 299436 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 192-48 chr7 108008331 108008694 + 0.666667 NA Intergenic Intergenic -5351 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 138.833-72 chr5 176930946 176931167 + 0.666667 NA intron (NR_146149, intron 10 of 15) MIRb|SINE|MIR -31710 NM_002115 3101 Hs.411695 NM_002115 ENSG00000160883 HK3 HKIII|HXK3 hexokinase 3 protein-coding 135.5-31 chr14 72738944 72739420 + 0.666667 NA intron (NM_001280544, intron 3 of 9) AluSz|SINE|Alu 153467 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 148.667-30 chr18 74469187 74469680 + 0.666667 NA Intergenic L1ME1|LINE|L1 -12165 NM_001044369 125704 Hs.371690 NM_001044369 ENSG00000187773 DIPK1C C18orf51|FAM69C divergent protein kinase domain 1C protein-coding 130-17 chr10 93046145 93046507 + 0.666667 NA intron (NM_001319195, intron 20 of 21) intron (NM_001319195, intron 20 of 21) -14472 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 132.167-66 chr8 69505425 69505678 + 0.666667 NA intron (NR_156414, intron 2 of 20) intron (NR_156414, intron 2 of 20) 12704 NM_001128206 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 121.5-8 chr1 202565261 202565586 + 0.666667 NA intron (NM_002481, intron 21 of 23) intron (NM_002481, intron 21 of 23) 25309 NM_001197131 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 136.667-76 chr4 172945194 172945423 + 0.666667 NA intron (NM_001034845, intron 9 of 12) L1ME1|LINE|L1 -218430 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 119.333 chr1 50850324 50850515 + 0.666667 NA intron (NM_007051, intron 2 of 18) intron (NM_007051, intron 2 of 18) 109848 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 169-5 chr10 74525630 74526013 + 0.666667 NA intron (NM_001369123, intron 7 of 9) AluSq2|SINE|Alu 3503 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 147.833-23 chr16 13521602 13521916 + 0.666667 NA Intergenic Intergenic -398398 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 206.667-45 chr7 31149533 31149971 + 0.666667 NA Intergenic L1PA10|LINE|L1 97291 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 148.833-50 chr5 45563503 45563772 + 0.666667 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 132743 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 119.167-76 chr5 89553676 89553949 + 0.666667 NA Intergenic Intergenic 462908 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 126.167-22 chr12 110596137 110596475 + 0.666667 NA Intergenic L1MB3|LINE|L1 -12988 NR_138550 160760 Hs.13854 NM_139283 ENSG00000196850 PPTC7 TA-PP2C|TAPP2C PTC7 protein phosphatase homolog protein-coding 246.667-21 chr5 123529904 123530315 + 0.666667 NA intron (NM_001364148, intron 1 of 8) intron (NM_001364148, intron 1 of 8) -15308 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 159-34 chr18 51281680 51281975 + 0.666667 NA Intergenic MER4D1|LTR|ERV1 -84146 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 154.5-75 chr9 83993168 83993608 + 0.666667 NA intron (NM_001358293, intron 2 of 3) L1MB1|LINE|L1 12583 NM_001358293 80010 Hs.726327 NM_024945 ENSG00000178966 RMI1 BLAP75|C9orf76|FAAP75 RecQ mediated genome instability 1 protein-coding 218.333-11 chr12 77128826 77129550 + 0.666667 NA Intergenic MLT1A1|LTR|ERVL-MaLR -63619 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 164.333-61 chr5 149131052 149131446 + 0.666667 NA Intergenic MER5A1|DNA|hAT-Charlie -10198 NM_001345859 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 245.5 chr1 63270047 63270687 + 0.666667 NA intron (NR_038252, intron 3 of 11) AluSx1|SINE|Alu 46890 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 131.667-89 chr4 46165237 46165562 + 0.666667 NA Intergenic Intergenic -41345 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 155-52 chr3 108129384 108129896 + 0.666667 NA intron (NR_110028, intron 1 of 2) MER117|DNA|hAT-Charlie 3819 NR_110028 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 121-12 chr11 20893682 20893973 + 0.666667 NA intron (NM_201551, intron 5 of 18) L1MEd|LINE|L1 224241 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 143-78 chr8 80836968 80837338 + 0.666667 NA intron (NM_001033723, intron 1 of 8) intron (NM_001033723, intron 1 of 8) 37315 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 176-20 chr20 37284453 37284850 + 0.666667 NA Intergenic AluSg|SINE|Alu -5004 NM_001369743 63905 Hs.6126 NM_022077 ENSG00000101363 MANBAL - mannosidase beta like protein-coding 155.833-17 chr14 25236183 25236450 + 0.666667 NA Intergenic HSMAR2|DNA|TcMar-Mariner -186019 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 132.667-102 chr9 29693034 29693362 + 0.666667 NA Intergenic L1MA8|LINE|L1 -479597 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 180.667-70 chr8 12780632 12781099 + 0.666667 NA intron (NR_152742, intron 2 of 4) L1MA5|LINE|L1 -13375 NR_102423 101409254 Hs.571476 NR_102423 ENSG00000255494 LINC00681 - long intergenic non-protein coding RNA 681 ncRNA 116-96 chr8 90405401 90405747 + 0.666667 NA Intergenic L1PA17|LINE|L1 184086 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 123-2 chr1 206026694 206026981 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger -2942 NM_148964 1510 Hs.644082 NM_001910 ENSG00000196188 CTSE CATE cathepsin E protein-coding 220.667-37 chr6 163676466 163676983 + 0.666667 NA Intergenic HERVL-int|LTR|ERVL -5240 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 117.333-3 chr1 32787928 32788206 + 0.666667 NA intron (NM_003680, intron 6 of 12) AluJb|SINE|Alu 22440 NM_001198973 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 145.5-74 chr8 75727126 75727539 + 0.666667 NA Intergenic Intergenic 187364 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 117.667-40 chr14 36763213 36763452 + 0.666667 NA intron (NM_001171170, intron 3 of 10) L2b|LINE|L2 105764 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 195.833-31 chr8 97710062 97710651 + 0.666667 NA intron (NM_001363139, intron 6 of 9) intron (NM_001363139, intron 6 of 9) -65432 NM_018407 55353 Hs.492314 NM_018407 ENSG00000104341 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 125-42 chr2 51131973 51132419 + 0.666667 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 99595 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 126.333-83 chr5 5446652 5446994 + 0.666667 NA intron (NM_015325, intron 7 of 18) intron (NM_015325, intron 7 of 18) 24146 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 209-29 chr21 31188299 31188929 + 0.666667 NA intron (NM_001353686, intron 13 of 27) AluJr4|SINE|Alu -27674 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 125.667-66 chr20 36845124 36845495 + 0.666667 NA intron (NM_080627, intron 1 of 14) L2b|LINE|L2 14564 NM_199181 140710 Hs.460807 NM_080627 ENSG00000149639 SOGA1 C20orf117|KIAA0889|SOGA suppressor of glucose, autophagy associated 1 protein-coding 115.5-103 chr8 130256139 130256358 + 0.666667 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 40285 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 177.667-33 chr19 31717785 31718209 + 0.666667 NA Intergenic (T)n|Simple_repeat|Simple_repeat 125716 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 127.833-70 chr7 31994645 31994877 + 0.666667 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 75646 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 154.667-14 chr12 14198835 14199127 + 0.666667 NA Intergenic Intergenic -166651 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 259-8 chr18 44189525 44190057 + 0.666667 NA Intergenic MER110|LTR|ERV1 341906 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 132-69 chr5 37112216 37112466 + 0.666667 NA intron (NM_023073, intron 50 of 51) intron (NM_023073, intron 50 of 51) -136705 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 146.5-65 chr4 107403429 107403815 + 0.666667 NA Intergenic Intergenic 316612 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 130.333-2 chr1 33661308 33661616 + 0.666667 NA intron (NM_052896, intron 26 of 69) MER103C|DNA|hAT-Charlie 188817 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 116.667-16 chr10 131139871 131140098 + 0.666667 NA intron (NM_174937, intron 7 of 11) intron (NM_174937, intron 7 of 11) 44766 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 168.333-33 chr20 3278149 3278553 + 0.666667 NA intron (NM_001009984, intron 29 of 36) intron (NM_001009984, intron 29 of 36) -39161 NM_001174089 83959 Hs.105607 NM_032034 ENSG00000088836 SLC4A11 BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2 solute carrier family 4 member 11 protein-coding 178.333-31 chr20 32011679 32012041 + 0.666667 NA intron (NM_080625, intron 1 of 8) L2b|LINE|L2 1422 NM_001365692 140706 Hs.382151 NM_080625 ENSG00000101331 CCM2L C20orf160|dJ310O13.5 CCM2 like scaffold protein protein-coding 128.5-24 chr15 69762793 69763012 + 0.666667 NA Intergenic Intergenic -72332 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 161.167-55 chr8 41924424 41924714 + 0.666667 NA Intergenic L1ME3B|LINE|L1 -27828 NM_001142446 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 122-22 chr16 8531570 8531900 + 0.666667 NA intron (NR_110736, intron 3 of 3) intron (NR_110736, intron 3 of 3) 58103 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 140.833-50 chr5 131097750 131098144 + 0.666667 NA Intergenic L1MB7|LINE|L1 67309 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 159.667-35 chr14 71383398 71383752 + 0.666667 NA intron (NM_001354285, intron 2 of 24) MSTB|LTR|ERVL-MaLR -14762 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 172.333-18 chr12 25413714 25414191 + 0.666667 NA Intergenic L2b|LINE|L2 139331 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 198.333-16 chr17 47363874 47364291 + 0.666667 NA intron (NM_152347, intron 10 of 24) intron (NM_152347, intron 10 of 24) 40127 NM_001195192 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 162.667-3 chr1 35887373 35887971 + 0.666667 NA intron (NM_001317122, intron 1 of 18) intron (NM_001317122, intron 1 of 18) 4463 NM_012199 26523 Hs.22867 NM_012199 ENSG00000092847 AGO1 EIF2C|EIF2C1|GERP95|Q99|hAgo1 argonaute RISC component 1 protein-coding 159-32 chr18 10546489 10546853 + 0.666667 NA intron (NM_003826, intron 9 of 11) L1MEf|LINE|L1 20644 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 207.5-13 chr16 4185194 4185553 + 0.666667 NA Intergenic Intergenic 56707 NM_001323667 6345 Hs.10041 NM_001098814 ENSG00000185739 SRL SAR sarcalumenin protein-coding 122.667-87 chr5 149970326 149970561 + 0.666667 NA intron (NM_000112, intron 1 of 2) AluJo|SINE|Alu 9706 NM_000112 1836 Hs.302738 NM_000112 ENSG00000155850 SLC26A2 D5S1708|DTD|DTDST|EDM4|MST153|MSTP157 solute carrier family 26 member 2 protein-coding 167-25 chr14 79352929 79353217 + 0.666667 NA intron (NM_001105250, intron 1 of 6) MIRb|SINE|MIR 73693 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 185.333-48 chr5 53732131 53732481 + 0.666667 NA Intergenic L1MC5a|LINE|L1 87376 NR_147167 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 144.5-81 chr6 85478407 85478701 + 0.666667 NA intron (NM_002526, intron 3 of 8) MIRb|SINE|MIR 28471 NM_002526 4907 Hs.153952 NM_002526 ENSG00000135318 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase ecto protein-coding 173.5-5 chr1 232814603 232814911 + 0.666667 NA Intergenic Intergenic 9865 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 152.667-44 chr2 88752636 88753035 + 0.666667 NA Intergenic Intergenic -13067 NR_015424 645784 Hs.105323 NR_015424 ENSG00000230006 ANKRD36BP2 - ankyrin repeat domain 36B pseudogene 2 pseudo 152.5-76 chrX 46810220 46810537 + 0.666667 NA Intergenic L1MD2|LINE|L1 -26665 NM_006915 6102 Hs.44766 NM_006915 ENSG00000102218 RP2 DELXp11.3|NM23-H10|NME10|TBCCD2|XRP2 RP2 activator of ARL3 GTPase protein-coding 186.5-52 chr5 37546761 37547376 + 0.666667 NA intron (NM_001345998, intron 9 of 17) intron (NM_001345998, intron 9 of 17) 167750 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 192-47 chr7 99573424 99573806 + 0.666667 NA 3' UTR (NM_138494, exon 3 of 3) 3' UTR (NM_138494, exon 3 of 3) 14781 NM_001363333 79027 Hs.599798 NM_024061 ENSG00000197343 ZNF655 VIK|VIK-1 zinc finger protein 655 protein-coding 170.333-31 chr16 57730367 57730796 + 0.666667 NA intron (NM_032269, intron 16 of 17) MIRb|SINE|MIR -5189 NM_005886 10300 Hs.275675 NM_005886 ENSG00000140854 KATNB1 KAT|LIS6 katanin regulatory subunit B1 protein-coding 166-2 chr1 75049483 75049809 + 0.666667 NA Intergenic L1MA1|LINE|L1 -78788 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 161.333-36 chr2 23716384 23716956 + 0.666667 NA Intergenic Intergenic 210453 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 129-79 chr5 175181952 175182198 + 0.666667 NA Intergenic Intergenic -186344 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 132.667-98 chr8 120056953 120057173 + 0.666667 NA Intergenic L1ME3F|LINE|L1 -68039 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 201.333-32 chr5 130887057 130887447 + 0.666667 NA Intergenic Intergenic 278004 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 201-9 chr10 45625607 45626077 + 0.666667 NA intron (NM_174890, intron 7 of 9) intron (NM_174890, intron 7 of 9) -30936 NM_145021 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 148.167-26 chr16 57895829 57896089 + 0.666667 NA intron (NM_001297, intron 31 of 32) L1MC4a|LINE|L1 75169 NM_001297 1258 Hs.147062 NM_001297 ENSG00000070729 CNGB1 CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45 cyclic nucleotide gated channel beta 1 protein-coding 250.833-11 chr7 22633165 22633641 + 0.666667 NA Intergenic Intergenic 32130 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 222.333-3 chr1 176710794 176711433 + 0.666667 NA intron (NM_020318, intron 11 of 22) MLT1J|LTR|ERVL-MaLR 247938 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 166.333-20 chr14 20535434 20535804 + 0.666667 NA Intergenic MLT1E3|LTR|ERVL-MaLR 25147 NM_001012975 338879 Hs.451057 NM_001012975 ENSG00000182545 RNASE10 RAH1|RNASE9 ribonuclease A family member 10 (inactive) protein-coding 158.667-60 chr3 94456400 94456680 + 0.666667 NA Intergenic Intergenic 393479 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 161.667-90 chr8 115540305 115540708 + 0.666667 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 127507 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 123-38 chr19 47135066 47135341 + 0.666667 NA intron (NR_027280, intron 1 of 8) L1MA3|LINE|L1 4368 NM_001145713 10055 Hs.515500 NM_005500 ENSG00000142230 SAE1 AOS1|HSPC140|SUA1|UBLE1A SUMO1 activating enzyme subunit 1 protein-coding 134-81 chr4 66656102 66656376 + 0.666667 NA Intergenic AluSz6|SINE|Alu 379415 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 126-72 chr5 22551435 22551675 + 0.666667 NA intron (NM_004061, intron 1 of 14) LTR87|LTR|ERVL? 301789 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 172.5-54 chr7 36749367 36750000 + 0.666667 NA Intergenic Intergenic -25134 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 120-109 chr8 126616928 126617276 + 0.666667 NA Intergenic Intergenic -58624 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 231.667-26 chr3 190103418 190103827 + 0.666667 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 17275 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 124-96 chr8 98685024 98685356 + 0.666667 NA intron (NM_001256313, intron 4 of 8) intron (NM_001256313, intron 4 of 8) 140481 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 127.833-50 chr22 28636569 28636946 + 0.666667 NA intron (NM_001145418, intron 1 of 22) L1MA9|LINE|L1 43108 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 158.833-49 chr5 22907920 22908295 + 0.666667 NA Intergenic Intergenic -54763 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 183.667-3 chr1 64529169 64529509 + 0.666667 NA intron (NM_001293274, intron 1 of 25) intron (NM_001293274, intron 1 of 25) 23425 NM_001293274 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 166-4 chr1 201627070 201627572 + 0.666667 NA Intergenic AluSz|SINE|Alu -21001 NM_020443 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 136.333-54 chr20 54044730 54044954 + 0.666667 NA intron (NM_001366297, intron 3 of 8) AluSx|SINE|Alu 14178 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 136-9 chr10 44807240 44807552 + 0.666667 NA Intergenic Intergenic -103920 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 245.667-27 chr4 34186766 34187209 + 0.666667 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 82760 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 212.5-31 chr8 103942697 103943041 + 0.666667 NA exon (NM_001348501, exon 11 of 25) exon (NM_001348501, exon 11 of 25) 123649 NM_001348502 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 247.5-27 chr7 141503682 141504409 + 0.666667 NA Intergenic Intergenic -47365 NM_018238 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 341.333-4 chr4 31968505 31969101 + 0.666667 NA Intergenic Intergenic -28576 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 195.667-42 chr7 95211804 95212156 + 0.666667 NA intron (NM_001166160, intron 7 of 19) AluJr|SINE|Alu 112552 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 144.333-29 chr14 56476834 56477249 + 0.666667 NA Intergenic Intergenic -37290 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 183.333-35 chr21 35368744 35369292 + 0.666667 NA Intergenic Intergenic 211746 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 235.167-5 chr12 79716498 79716897 + 0.666667 NA Intergenic Intergenic -25600 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 188.333-24 chr17 71106868 71107216 + 0.666667 NA intron (NR_104152, intron 3 of 3) AluSq2|SINE|Alu 95137 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 135.833-51 chr3 134274739 134275061 + 0.666667 NA Intergenic L1PREC2|LINE|L1 -24156 NM_002958 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor like tyrosine kinase protein-coding 157.667-45 chr22 40385963 40386350 + 0.666667 NA intron (NR_146415, intron 1 of 20) AluJb|SINE|Alu 15562 NM_001350041 27352 Hs.474914 NM_015705 ENSG00000100359 SGSM3 CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP small G protein signaling modulator 3 protein-coding 118.667-23 chr11 65131003 65131289 + 0.666667 NA exon (NM_032431, exon 9 of 16) exon (NM_032431, exon 9 of 16) -1168 NR_106809 102465449 NR_106809 ENSG00000284489 MIR6751 hsa-mir-6751 microRNA 6751 ncRNA 188.167-30 chr3 148715278 148715767 + 0.666667 NA intron (NM_000685, intron 2 of 2) intron (NM_000685, intron 2 of 2) -14658 NM_032049 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 236-26 chr8 52325803 52326380 + 0.666667 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) -71599 NM_001352842 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 146.5-69 chr5 41615872 41616495 + 0.666667 NA Intergenic Intergenic -105582 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 166.5-31 chr2 99340610 99340991 + 0.666667 NA intron (NM_015904, intron 1 of 23) AluSz|SINE|Alu 3411 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 178.667-11 chr12 108160816 108161220 + 0.666667 NA intron (NM_001304447, intron 1 of 9) intron (NM_001304447, intron 1 of 9) 29232 NM_001304447 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 133.5-43 chr4 55961219 55961467 + 0.666667 NA intron (NM_025009, intron 6 of 25) intron (NM_025009, intron 6 of 25) 12398 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 151.333-27 chr13 97187300 97187795 + 0.666667 NA Intergenic Intergenic -7925 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 186.167-27 chr3 37887420 37887888 + 0.666667 NA intron (NM_001008392, intron 1 of 7) MIR|SINE|MIR 25774 NM_001008392 10217 Hs.475963 NM_005808 ENSG00000144677 CTDSPL C3orf8|HYA22|PSR1|RBSP3|SCP3 CTD small phosphatase like protein-coding 115-45 chr20 15442780 15443089 + 0.666667 NA intron (NM_001351663, intron 7 of 17) intron (NM_001351663, intron 7 of 17) 246094 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 219.5-37 chr6 124852831 124853256 + 0.666667 NA Intergenic L2b|LINE|L2 -109502 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 119-83 chr5 160211620 160211983 + 0.666667 NA intron (NM_001040442, intron 1 of 5) intron (NM_001040442, intron 1 of 5) 12760 NM_001040442 2172 Hs.519719 NM_001445 ENSG00000170231 FABP6 I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP fatty acid binding protein 6 protein-coding 114.167-22 chr12 56780989 56781246 + 0.666667 NA intron (NM_003725, intron 2 of 4) LTR10C|LTR|ERV1 17793 NM_003725 8630 Hs.524513 NM_003725 ENSG00000025423 HSD17B6 HSE|RODH|SDR9C6 hydroxysteroid 17-beta dehydrogenase 6 protein-coding 179-54 chr8 118310598 118310978 + 0.666667 NA intron (NM_001101676, intron 4 of 4) LTR67B|LTR|ERVL -198969 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 135.333-55 chr4 17869585 17869858 + 0.666667 NA intron (NM_001365660, intron 6 of 7) L2c|LINE|L2 58742 NM_022346 64151 Hs.567567 NM_022346 ENSG00000109805 NCAPG CAPG|CHCG|NY-MEL-3|YCG1 non-SMC condensin I complex subunit G protein-coding 115.333-43 chr18 3915245 3915454 + 0.666667 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) 29996 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 131-71 chr8 23317159 23317592 + 0.666667 NA intron (NM_002318, intron 8 of 13) intron (NM_002318, intron 8 of 13) -18833 NR_038323 100507156 Hs.661130 NR_038323 ENSG00000253837 LOC100507156 - uncharacterized LOC100507156 ncRNA 163.167-27 chr4 47877800 47878379 + 0.666667 NA intron (NR_103795, intron 17 of 23) intron (NR_103795, intron 17 of 23) -36138 NR_125879 101927157 Hs.134190 NR_125879 LOC101927157 - uncharacterized LOC101927157 ncRNA 142-93 chr8 129676622 129676869 + 0.666667 NA intron (NR_130917, intron 1 of 3) L2a|LINE|L2 3494 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 190.667-53 chr7 49404281 49404778 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -369109 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 190-7 chr10 55062069 55062482 + 0.666667 NA intron (NM_001354404, intron 3 of 34) MLT1A0|LTR|ERVL-MaLR -260984 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 144.5-44 chr2 71908794 71909213 + 0.666667 NA Intergenic Intergenic 238859 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 146.333-49 chr2 49794886 49795265 + 0.666667 NA Intergenic AluSq2|SINE|Alu 179128 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 121-37 chr17 51094540 51094808 + 0.666667 NA intron (NM_001130527, intron 1 of 29) intron (NM_001130527, intron 1 of 29) 26194 NM_001130527 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 114-52 chr19 29947240 29947561 + 0.666667 NA intron (NR_045557, intron 1 of 9) intron (NR_045557, intron 1 of 9) 5161 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 134.833-35 chr3 99488676 99488968 + 0.666667 NA Intergenic L1MA8|LINE|L1 -149772 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 192-38 chr5 90233288 90233735 + 0.666667 NA intron (NR_120601, intron 3 of 5) intron (NR_120601, intron 3 of 5) 56560 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 154.167-20 chr14 60309263 60309540 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR -13795 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 131.833-23 chr16 75445497 75445810 + 0.666667 NA 3' UTR (NM_145254, exon 3 of 3) 3' UTR (NM_145254, exon 3 of 3) -12150 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 176-17 chr2 98483060 98483446 + 0.666667 NA intron (NM_001351428, intron 1 of 24) intron (NM_001351428, intron 1 of 24) 37243 NM_001351426 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 236.333-25 chr8 124352327 124352992 + 0.666667 NA intron (NM_194291, intron 1 of 6) intron (NM_194291, intron 1 of 6) 20040 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 156-60 chr4 75146221 75146656 + 0.666667 NA Intergenic Intergenic -61730 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 126.333-36 chr15 39853472 39853723 + 0.666667 NA intron (NM_001271854, intron 1 of 3) intron (NM_001271854, intron 1 of 3) -24321 NM_001271855 11245 Hs.37196 NM_007223 ENSG00000166073 GPR176 HB-954 G protein-coupled receptor 176 protein-coding 159.333-22 chr12 3374160 3374553 + 0.666667 NA Intergenic (CTCT)n|Simple_repeat|Simple_repeat 6248 NR_146865 101930162 Hs.351489 NR_146865 LINC02417 - long intergenic non-protein coding RNA 2417 ncRNA 150.333-86 chr5 84892744 84893147 + 0.666667 NA Intergenic L1MA2|LINE|L1 -508065 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 142.833-5 chr10 105063610 105064151 + 0.666667 NA intron (NM_014978, intron 5 of 26) intron (NM_014978, intron 5 of 26) -397664 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 151.667-45 chr2 145999385 145999824 + 0.666667 NA Intergenic L1P4|LINE|L1 -587453 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 126.833-70 chr8 137117535 137118104 + 0.666667 NA Intergenic Intergenic 295769 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 265.334-8 chr15 64860701 64861203 + 0.666667 NA intron (NM_001195059, intron 3 of 4) intron (NM_001195059, intron 3 of 4) 19037 NM_025201 80301 Hs.709337 NM_025201 ENSG00000241839 PLEKHO2 PLEKHQ1|PP1628|pp9099 pleckstrin homology domain containing O2 protein-coding 134.833-20 chr16 27834231 27834508 + 0.666667 NA intron (NM_001109763, intron 4 of 6) L1MD1|LINE|L1 53788 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 190.5-41 chr4 94843837 94844304 + 0.666667 NA intron (NM_001203, intron 1 of 12) L1MA9|LINE|L1 86115 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 125.667-116 chr8 56878244 56878454 + 0.666667 NA Intergenic Intergenic 115518 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 178.833-16 chr2 34666952 34667238 + 0.666667 NA Intergenic Intergenic -10462 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 141.667-73 chr3 190984937 190985209 + 0.666667 NA Intergenic L1PA16|LINE|L1 107143 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 149.333-72 chr5 13739238 13739718 + 0.666667 NA intron (NM_001369, intron 65 of 78) THE1D|LTR|ERVL-MaLR 205002 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 168-30 chr2 161284851 161285171 + 0.666667 NA Intergenic L1MEd|LINE|L1 -23414 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 131-32 chr2 157428786 157429003 + 0.666667 NA intron (NM_004288, intron 5 of 7) intron (NM_004288, intron 5 of 7) 15195 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 227-10 chr16 72808998 72809609 + 0.666667 NA intron (NM_001164766, intron 6 of 8) intron (NM_001164766, intron 6 of 8) -144333 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 186.833-2 chr1 166023099 166023439 + 0.666667 NA Intergenic HAL1|LINE|L1 115348 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 205.667-45 chr5 19883797 19884252 + 0.666667 NA intron (NM_001291957, intron 1 of 12) intron (NM_001291957, intron 1 of 12) 2248 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 188.833-7 chr11 66307923 66308222 + 0.666667 NA Intergenic Intergenic 8972 NM_020404 57124 Hs.195727 NM_020404 ENSG00000174807 CD248 CD164L1|TEM1 CD248 molecule protein-coding 143.833-21 chr2 232764934 232765338 + 0.666667 NA TTS (NM_001172417) TTS (NM_001172417) 11429 NM_002242 3769 Hs.467338 NM_002242 ENSG00000115474 KCNJ13 KIR1.4|KIR7.1|LCA16|SVD potassium voltage-gated channel subfamily J member 13 protein-coding 145.333-91 chr8 120196005 120196288 + 0.666667 NA intron (NM_021110, intron 5 of 47) intron (NM_021110, intron 5 of 47) 71044 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 153.333-20 chr15 46183682 46184076 + 0.666667 NA Intergenic Intergenic 478684 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 146.5-16 chr11 35572791 35573066 + 0.666667 NA Intergenic Intergenic -42628 NM_001282675 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 226.833-10 chr18 22914676 22915187 + 0.666667 NA Intergenic Intergenic -18397 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 143.167-68 chr5 146232120 146232514 + 0.666667 NA intron (NM_018989, intron 6 of 20) intron (NM_018989, intron 6 of 20) 28712 NM_018989 54439 Hs.61441 NM_018989 ENSG00000091009 RBM27 ARRS1|Psc1|ZC3H18|ZC3H20 RNA binding motif protein 27 protein-coding 162-5 chr1 62126299 62126770 + 0.666667 NA intron (NM_001350145, intron 39 of 43) intron (NM_001350145, intron 39 of 43) -47678 NR_036059 100422946 NR_036059 ENSG00000283690 MIR3116-2 - microRNA 3116-2 ncRNA 149.167-7 chr11 23071136 23071661 + 0.666667 NA Intergenic L1MD3|LINE|L1 -210924 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 200.167-3 chr1 192518788 192519227 + 0.666667 NA Intergenic Intergenic -56766 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 127-8 chr10 67682588 67682962 + 0.666667 NA intron (NM_013266, intron 1 of 17) L1MC5a|LINE|L1 13420 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 160.333-68 chr9 115676425 115676857 + 0.666667 NA Intergenic ERVL-B4-int|LTR|ERVL 67598 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 154.333-25 chr15 57163874 57164187 + 0.666667 NA intron (NM_207038, intron 5 of 19) LTR48B|LTR|ERV1 -55400 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 216.333-20 chr18 33371923 33372442 + 0.666667 NA intron (NM_001308126, intron 5 of 23) intron (NM_001308126, intron 5 of 23) 68389 NM_001371121 249.5-4 chr10 32086984 32087656 + 0.666667 NA Intergenic L1PA16|LINE|L1 -30895 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 118.333-26 chr12 66152693 66152941 + 0.666667 NA intron (NM_016056, intron 2 of 6) intron (NM_016056, intron 2 of 6) 17255 NM_016056 51643 Hs.505934 NM_016056 ENSG00000155957 TMBIM4 CGI-119|GAAP|LFG4|S1R|ZPRO transmembrane BAX inhibitor motif containing 4 protein-coding 168.833-51 chr8 121758147 121758489 + 0.666667 NA Intergenic Intergenic -116878 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 198.5-3 chr10 49187512 49188137 + 0.666667 NA intron (NM_001288742, intron 1 of 4) intron (NM_001288742, intron 1 of 4) 567 NM_001353330 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 181.667-26 chr2 108706225 108706540 + 0.666667 NA Intergenic L1M1|LINE|L1 -13100 NM_006267 5903 Hs.199561 NM_006267 ENSG00000153201 RANBP2 ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2 RAN binding protein 2 protein-coding 165.167-51 chr7 123630273 123630555 + 0.666667 NA intron (NM_080928, intron 9 of 9) L2a|LINE|L2 -5457 NR_111922 102724555 Hs.83916 NR_111922 ENSG00000230442 LOC102724555 - uncharacterized LOC102724555 ncRNA 130-41 chr15 100480526 100480762 + 0.666667 NA intron (NM_001290341, intron 7 of 13) L1MC5|LINE|L1 63642 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 145-75 chr6 10295894 10296274 + 0.666667 NA Intergenic Intergenic -108418 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 171.833-50 chr9 99316027 99316382 + 0.666667 NA Intergenic L2a|LINE|L2 59053 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 131.333-82 chr4 91842782 91843077 + 0.666667 NA Intergenic Intergenic 434373 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 115.167-78 chr4 137907041 137907245 + 0.666667 NA Intergenic L1MEd|LINE|L1 -181871 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 209-34 chr3 80589996 80590537 + 0.666667 NA Intergenic HAL1|LINE|L1 -174631 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 129.333-104 chr8 122050391 122050674 + 0.666667 NA Intergenic Intergenic -409092 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 141.833-36 chr6 15919805 15920088 + 0.666667 NA Intergenic L2a|LINE|L2 -209140 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 117.667-21 chr10 95671779 95672154 + 0.666667 NA intron (NM_015631, intron 13 of 13) L1ME2|LINE|L1 -15255 NM_001323415 5832 Hs.500645 NM_002860 ENSG00000059573 ALDH18A1 ADCL3|ARCL3A|GSAS|P5CS|PYCS|SPG9|SPG9A|SPG9B aldehyde dehydrogenase 18 family member A1 protein-coding 118.333-2 chr1 40444013 40444243 + 0.666667 NA Intergenic MSTD|LTR|ERVL-MaLR -5936 NM_001369565 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 142.667-29 chr14 24421556 24422153 + 0.666667 NA Intergenic AluSq|SINE|Alu -7432 NM_001290256 23351 Hs.713590 NM_015299 ENSG00000100441 KHNYN KIAA0323 KH and NYN domain containing protein-coding 176.667-53 chr4 42504603 42504920 + 0.666667 NA intron (NM_001105529, intron 22 of 35) L2a|LINE|L2 107273 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 143.167-69 chr5 156388635 156389075 + 0.666667 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 61691 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 130-32 chr14 42509562 42509883 + 0.666667 NA Intergenic L1PA14|LINE|L1 902866 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 174.5-24 chr2 200035669 200036508 + 0.666667 NA Intergenic Intergenic -80597 NR_109905 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 122.167-41 chr22 30903612 30903804 + 0.666667 NA intron (NM_001282741, intron 11 of 12) intron (NM_001282741, intron 11 of 12) 18071 NR_146603 107985544 Hs.638287 NR_146603 LOC107985544 - uncharacterized LOC107985544 ncRNA 113.833-25 chr15 87317342 87317820 + 0.666667 NA Intergenic MIRb|SINE|MIR -259348 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 220-6 chr11 92727907 92728339 + 0.666667 NA intron (NM_001008781, intron 3 of 24) intron (NM_001008781, intron 3 of 24) 187505 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 249.333-16 chr3 15197051 15197515 + 0.666667 NA intron (NR_027927, intron 1 of 4) intron (NR_027927, intron 1 of 4) 8676 NR_027927 344875 Hs.722756 NR_027927 ENSG00000230524 COL6A4P1 COL6A4|COL6A4P|DIVA|DVWA|VWA6 collagen type VI alpha 4 pseudogene 1 pseudo 202-38 chr6 49224813 49225341 + 0.666667 NA Intergenic L1MA2|LINE|L1 238176 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 132.167-21 chr15 41920852 41921102 + 0.666667 NA promoter-TSS (NR_120332) promoter-TSS (NR_120332) -440 NR_120332 101928363 Hs.680195 NR_120332 EHD4-AS1 - EHD4 antisense RNA 1 ncRNA 143.333-44 chr20 4196882 4197192 + 0.666667 NA Intergenic L1ME3A|LINE|L1 3947 NR_033917 728228 Hs.636379 NR_033917 ENSG00000230176 LINC01433 - long intergenic non-protein coding RNA 1433 ncRNA 146-62 chr7 35453753 35454148 + 0.666667 NA Intergenic Intergenic 140095 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 168.167-2 chr1 175037751 175038129 + 0.666667 NA Intergenic Intergenic -14485 NR_037606 63931 Hs.654858 NM_022100 ENSG00000120333 MRPS14 COXPD38|DJ262D12.2|HSMRPS14|MRP-S14|S14mt mitochondrial ribosomal protein S14 protein-coding 136-81 chr8 122980858 122981173 + 0.666667 NA Intergenic Intergenic 44757 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 176.333-22 chr14 55675476 55675807 + 0.666667 NA intron (NR_073129, intron 41 of 45) intron (NR_073129, intron 41 of 45) -90604 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 220.667-16 chr2 17762698 17763191 + 0.666667 NA intron (NM_182625, intron 3 of 13) intron (NM_182625, intron 3 of 13) 8806 NM_001130009 348654 Hs.467793 NM_182625 ENSG00000178295 GEN1 Gen GEN1 Holliday junction 5' flap endonuclease protein-coding 156.167-60 chr8 67015811 67016228 + 0.666667 NA intron (NM_001364910, intron 2 of 7) intron (NM_001364910, intron 2 of 7) 12532 NM_001348563 286187 Hs.583933 NM_001013626 ENSG00000178125 PPP1R42 LRRC67|TLLR|TLRR|dtr protein phosphatase 1 regulatory subunit 42 protein-coding 116-50 chr2 100346541 100346818 + 0.666667 NA Intergenic L3|LINE|CR1 -23946 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 147-71 chr5 143498996 143499287 + 0.666667 NA Intergenic Intergenic -63629 NM_001018075 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 149-58 chr3 188233132 188233412 + 0.666667 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 7867 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 182.667-30 chr2 34693577 34694244 + 0.666667 NA intron (NR_126404, intron 1 of 2) intron (NR_126404, intron 1 of 2) 16353 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 199.167-6 chr11 23968373 23968946 + 0.666667 NA Intergenic Intergenic -528394 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 136-70 chr5 118852155 118852688 + 0.666667 NA intron (NM_001308081, intron 4 of 5) MER11A|LTR|ERVK -122165 NR_036263 100422872 NR_036263 ENSG00000283429 MIR1244-3 - microRNA 1244-3 ncRNA 190.667-9 chr12 10088313 10088966 + 0.666667 NA intron (NM_001297748, intron 1 of 4) Tigger11a|DNA|TcMar-Tigger 10346 NM_001297751 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 173.333-46 chr4 5788867 5789361 + 0.666667 NA intron (NM_001306090, intron 12 of 20) MER104|DNA|TcMar-Tc2 77913 NM_001306092 2121 Hs.646899 NM_014556 ENSG00000072840 EVC DWF-1|EVC1|EVCL EvC ciliary complex subunit 1 protein-coding 180-13 chr15 70661742 70662094 + 0.666667 NA intron (NM_018003, intron 17 of 18) L1PA4|LINE|L1 26669 NR_126482 104548973 NR_126482 ENSG00000280515 SALRNA2 SAL-RNA2|XLOC_025931 senescence associated long non-coding RNA 2 ncRNA 217.333-8 chr12 50840265 50840747 + 0.666667 NA Intergenic Intergenic -2420 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 159-26 chr15 59990315 59990590 + 0.666667 NA Intergenic Intergenic -13859 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 138.333-117 chrX 99009213 99009562 + 0.666667 NA Intergenic Intergenic 1400886 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 118-36 chr14 68078111 68078317 + 0.666667 NA intron (NM_133509, intron 7 of 10) FLAM_A|SINE|Alu 254622 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 113.833-22 chr15 59773134 59773343 + 0.666667 NA Intergenic Intergenic -83918 NM_001368057 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 116.667-52 chr2 36159217 36159440 + 0.666667 NA Intergenic AluSx|SINE|Alu 196242 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 151.667-51 chr20 56330612 56330941 + 0.666667 NA Intergenic Intergenic -28198 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 118.333-3 chr1 96812192 96812506 + 0.666667 NA intron (NM_001300985, intron 11 of 13) L2|LINE|L2 89711 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 181.667-65 chr8 16793311 16793914 + 0.666667 NA Intergenic Intergenic 208733 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 405.5-5 chr3 20825931 20826856 + 0.666667 NA Intergenic Intergenic 483925 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 139.167-54 chr3 22685129 22685472 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR 517278 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 176.333-68 chrX 48527880 48528257 + 0.666667 NA intron (NM_006579, intron 4 of 4) intron (NM_006579, intron 4 of 4) 6260 NM_006579 10682 Hs.30619 NM_006579 ENSG00000147155 EBP CDPX2|CHO2|CPX|CPXD|MEND EBP cholestenol delta-isomerase protein-coding 139.333-88 chr7 34042384 34042735 + 0.666667 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 137020 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 128-77 chr5 147545824 147546110 + 0.666667 NA Intergenic Intergenic -14027 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 240.667-39 chr6 122451525 122452319 + 0.666667 NA exon (NM_020755, exon 6 of 10) exon (NM_020755, exon 6 of 10) 19885 NM_020755 57515 Hs.146668 NM_020755 ENSG00000111897 SERINC1 TDE1L|TDE2|TMS-2|TMS2 serine incorporator 1 protein-coding 155.333-25 chr13 73639992 73640453 + 0.666667 NA Intergenic AluSz6|SINE|Alu 75978 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 221-35 chr8 77172021 77172563 + 0.666667 NA Intergenic Intergenic -171248 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 153.833-65 chr8 124158872 124159117 + 0.666667 NA intron (NR_103547, intron 1 of 4) MIRb|SINE|MIR 12528 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 173.5-31 chr20 39419662 39419975 + 0.666667 NA Intergenic Intergenic -195070 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 122.833-32 chr15 77207502 77207772 + 0.666667 NA intron (NM_024776, intron 4 of 7) L1MC2|LINE|L1 17767 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 152.833-22 chr17 78348687 78349010 + 0.666667 NA Intergenic AluSc|SINE|Alu 11231 NM_003955 9021 Hs.527973 NM_003955 ENSG00000184557 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 147.167-23 chr15 64797528 64797945 + 0.666667 NA Intergenic AluSz|SINE|Alu -22147 NM_194272 348093 Hs.436518 NM_194272 ENSG00000166831 RBPMS2 - RNA binding protein, mRNA processing factor 2 protein-coding 171.333-39 chr20 40000120 40000681 + 0.666667 NA Intergenic Intergenic -4061 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 124.5-78 chr8 120930608 120930871 + 0.666667 NA Intergenic Intergenic -118693 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 120-98 chr6 120343315 120343629 + 0.666667 NA Intergenic MIR|SINE|MIR 328293 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 188.5-21 chr16 82780196 82780778 + 0.666667 NA intron (NR_110938, intron 1 of 2) intron (NR_110938, intron 1 of 2) 7168 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 164.333-56 chr5 25814084 25814494 + 0.666667 NA Intergenic AluSx3|SINE|Alu 623336 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 119-67 chr3 156154710 156154972 + 0.666667 NA intron (NM_003471, intron 1 of 13) intron (NM_003471, intron 1 of 13) 11879 NM_003471 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 142.333-64 chr21 20646746 20647161 + 0.666667 NA Intergenic Intergenic 156155 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 139.5-24 chr2 18312565 18312859 + 0.666667 NA Intergenic Intergenic 247941 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 195-32 chr3 136674642 136675112 + 0.666667 NA intron (NM_005862, intron 1 of 33) intron (NM_005862, intron 1 of 33) 77501 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 145.667-21 chr12 74228897 74229256 + 0.666667 NA intron (NR_038300, intron 3 of 6) L1M5|LINE|L1 63555 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 220.833-6 chr16 53302541 53302944 + 0.666667 NA intron (NM_001352157, intron 29 of 37) L1MC4a|LINE|L1 68470 NM_001347693 643802 Hs.451336 NM_001207030 LOC643802 - u3 small nucleolar ribonucleoprotein protein MPP10-like protein-coding 135.333-58 chr4 89949085 89949370 + 0.666667 NA intron (NM_001371403, intron 7 of 8) intron (NM_001371403, intron 7 of 8) 54373 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 175-19 chr12 23522725 23522988 + 0.666667 NA Intergenic AluJo|SINE|Alu 61730 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 123-44 chr2 115243435 115243662 + 0.666667 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -65689 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 225.667-15 chr2 78704507 78704981 + 0.666667 NA Intergenic Intergenic 159213 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 114.333-57 chr19 46928642 46929047 + 0.666667 NA intron (NM_004491, intron 2 of 6) AluSx1|SINE|Alu 67847 NM_004491 2909 Hs.509447 NM_004491 ENSG00000160007 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 189-35 chr4 28266258 28266880 + 0.666667 NA Intergenic MER77B|LTR|ERVL -553013 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 211.667-11 chr12 52223625 52224025 + 0.666667 NA TTS (NR_027358) TTS (NR_027358) -9418 NM_005556 3855 Hs.411501 NM_005556 ENSG00000135480 KRT7 CK7|K2C7|K7|SCL keratin 7 protein-coding 115.333-75 chr4 45351314 45351752 + 0.666667 NA Intergenic Intergenic -624899 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 136.333-68 chr4 70239958 70240206 + 0.666667 NA Intergenic Intergenic -2534 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 159.667-48 chr2 51967514 51967970 + 0.666667 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -402906 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 118.333-110 chr8 17488363 17488832 + 0.666667 NA Intergenic Intergenic -8491 NM_001370338 6542 Hs.448520 NM_003046 ENSG00000003989 SLC7A2 ATRC2|CAT2|HCAT2 solute carrier family 7 member 2 protein-coding 136.667-40 chr2 49264662 49264893 + 0.666667 NA Intergenic Intergenic -110250 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 170.833-47 chr7 107761366 107761687 + 0.666667 NA non-coding (NR_024199, exon 7 of 7) non-coding (NR_024199, exon 7 of 7) -16945 NR_144537 101927974 Hs.432792 NR_144536 ENSG00000241764 LOC101927974 - uncharacterized LOC101927974 ncRNA 134-5 chr1 68219476 68219784 + 0.666667 NA intron (NM_024911, intron 1 of 11) L2a|LINE|L2 12893 NM_024911 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 277-2 chr14 48804539 48805029 + 0.666667 NA Intergenic Intergenic 781596 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 232-11 chr14 47533318 47533758 + 0.666667 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 141416 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 117.667-131 chrX 4874225 4874462 + 0.666667 NA Intergenic L1MA9|LINE|L1 -240771 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 211.667-20 chr2 35394564 35394902 + 0.666667 NA Intergenic L1MEf|LINE|L1 -76672 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 119-60 chr20 63217049 63217369 + 0.666667 NA Intergenic Intergenic -1078 NM_017798 54915 Hs.744852 NM_017798 ENSG00000149658 YTHDF1 C20orf21 YTH N6-methyladenosine RNA binding protein 1 protein-coding 118.333-109 chr8 14151670 14152058 + 0.666667 NA intron (NM_001322880, intron 4 of 6) L1MD1|LINE|L1 522174 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 117.667-8 chr1 240850340 240850658 + 0.666667 NA intron (NM_001350116, intron 9 of 16) Tigger1|DNA|TcMar-Tigger -238344 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 147.833-58 chr6 37943108 37943345 + 0.666667 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 123499 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 144.333-33 chr15 87209779 87210045 + 0.666667 NA Intergenic Intergenic -221486 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 184.5-17 chr14 45706630 45707022 + 0.666667 NA intron (NR_146547, intron 1 of 1) intron (NR_146547, intron 1 of 1) 8776 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 121.5-77 chr4 131559362 131559627 + 0.666667 NA Intergenic Intergenic -205344 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 231.5-18 chr5 3456404 3457028 + 0.666667 NA intron (NR_147000, intron 2 of 2) intron (NR_147000, intron 2 of 2) 3900 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 248.167-11 chr16 12826366 12826919 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR -22755 NM_001099455 55313 Hs.460002 NM_018340 ENSG00000103381 CPPED1 CSTP1 calcineurin like phosphoesterase domain containing 1 protein-coding 116.5-81 chr6 154553779 154553989 + 0.666667 NA Intergenic AluSx1|SINE|Alu -43199 NM_001368117 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 198.667-34 chr22 35679202 35679685 + 0.666667 NA Intergenic L1ME3|LINE|L1 30997 NM_030641 80830 Hs.257352 NM_030641 ENSG00000221963 APOL6 APOL-VI|APOLVI apolipoprotein L6 protein-coding 230-12 chr2 114959240 114959927 + 0.666667 NA intron (NM_001321910, intron 2 of 26) L1MB7|LINE|L1 -104990 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 134.5-42 chr2 68983925 68984167 + 0.666667 NA Intergenic L1M5|LINE|L1 9473 NM_019617 56287 Hs.69319 NM_019617 ENSG00000169605 GKN1 AMP18|BRICD1|CA11|FOV|foveolin gastrokine 1 protein-coding 140.667-15 chr11 59674079 59674319 + 0.666667 NA Intergenic AluJr|SINE|Alu -5162 NM_152716 219988 Hs.591960 NM_152716 ENSG00000166889 PATL1 Pat1b|hPat1b PAT1 homolog 1, processing body mRNA decay factor protein-coding 173.333-4 chr1 93722268 93722750 + 0.666667 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -40672 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 122.333-69 chr22 27198284 27198564 + 0.666667 NA Intergenic Intergenic 10908 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 303.167 chr1 40341256 40341739 + 0.666667 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -24211 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 133-27 chr13 111974535 111974849 + 0.666667 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) 2382 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 241.667-38 chr8 69009962 69010578 + 0.666667 NA intron (NR_039986, intron 2 of 4) HAL1|LINE|L1 93920 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 181.333-36 chr22 28368992 28369287 + 0.666667 NA intron (NM_001145418, intron 2 of 22) L1M1|LINE|L1 -90730 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 130.667-91 chr7 114469262 114469610 + 0.666667 NA intron (NR_033767, intron 2 of 17) intron (NR_033767, intron 2 of 17) 42934 NM_001172767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 172.667-86 chr9 121486783 121487253 + 0.666667 NA intron (NR_003191, intron 1 of 6) intron (NR_003191, intron 1 of 6) 13009 NR_045211 2681 Hs.97469 NR_003191 ENSG00000204136 GGTA1P GGTA|GGTA1|GLYT2|a1/3GTP glycoprotein alpha-galactosyltransferase 1, pseudogene pseudo 167.5-26 chr15 47785140 47785522 + 0.666667 NA Intergenic Intergenic 60905 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 174.667-4 chr1 147234384 147234828 + 0.666667 NA intron (NM_001348451, intron 2 of 23) intron (NM_001348451, intron 2 of 23) -8078 NM_001348465 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 134.167-88 chr9 133373100 133373403 + 0.666667 NA intron (NM_001280791, intron 1 of 5) intron (NM_001280791, intron 1 of 5) 2809 NM_001280789 6836 Hs.512465 NM_033161 ENSG00000148248 SURF4 ERV29 surfeit 4 protein-coding 153.667-4 chr1 50474860 50475318 + 0.666667 NA intron (NM_007051, intron 18 of 18) intron (NM_007051, intron 18 of 18) -51646 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 177.5-4 chr1 90978181 90978576 + 0.666667 NA intron (NM_201269, intron 2 of 5) intron (NM_201269, intron 2 of 5) 43130 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 203-2 chr1 109779342 109779828 + 0.666667 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -15662 NM_139053 79574 Hs.485352 NM_024526 ENSG00000198758 EPS8L3 EPS8R3 EPS8 like 3 protein-coding 166.333-54 chr4 2105868 2106344 + 0.666667 NA intron (NM_181808, intron 19 of 25) intron (NM_181808, intron 19 of 25) 46779 NM_178557 339983 Hs.318529 NM_178557 ENSG00000185818 NAT8L CML3|NACED|NAT8-LIKE N-acetyltransferase 8 like protein-coding 183.667-68 chr6 73611445 73611814 + 0.666667 NA intron (NM_012434, intron 8 of 10) intron (NM_012434, intron 8 of 10) 42363 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 202.667-48 chr8 110569360 110569781 + 0.666667 NA Intergenic A-rich|Low_complexity|Low_complexity 457863 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 153.167-56 chr7 119101327 119101774 + 0.666667 NA Intergenic Intergenic 805825 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 197.667-44 chr4 72962061 72962431 + 0.666667 NA Intergenic L1PA15-16|LINE|L1 107470 NM_001297732 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 168-32 chr20 58303824 58304249 + 0.666667 NA intron (NR_003505, intron 2 of 16) intron (NR_003505, intron 2 of 16) 5403 NR_003505 55370 Hs.473179 NM_018498 PPP4R1L C20orf192|PPP4R1P1|PRO1085 protein phosphatase 4 regulatory subunit 1 like (pseudogene) pseudo 147.833-64 chr8 85477118 85477425 + 0.666667 NA exon (NM_001293675, exon 5 of 6) exon (NM_001293675, exon 5 of 6) -12356 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 204.833-25 chr5 94302913 94303249 + 0.666667 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -191382 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 143.333-41 chr2 209278959 209279295 + 0.666667 NA Intergenic L2|LINE|L2 -144920 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 151.167-10 chr11 29864721 29865075 + 0.666667 NA Intergenic AluJr4|SINE|Alu 117495 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 184.667-32 chr3 28602125 28602483 + 0.666667 NA intron (NR_038840, intron 2 of 4) intron (NR_038840, intron 2 of 4) 27026 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 140.833-29 chr2 65563526 65564001 + 0.666667 NA Intergenic Intergenic -131164 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 187.333-42 chr21 15400413 15400783 + 0.666667 NA Intergenic MLT1K|LTR|ERVL-MaLR -329336 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 141.834-5 chr20 59236331 59236854 + 0.666667 NA intron (NM_178457, intron 3 of 4) AluJb|SINE|Alu 45572 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 240.667-20 chr2 126594313 126594695 + 0.666667 NA Intergenic L1ME1|LINE|L1 -61431 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 211.333-36 chr4 87383958 87384398 + 0.666667 NA intron (NM_016245, intron 1 of 6) MER11A|LTR|ERVK 7010 NM_016245 51170 Hs.594923 NM_016245 ENSG00000198189 HSD17B11 17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2 hydroxysteroid 17-beta dehydrogenase 11 protein-coding 293.667-15 chr8 117581692 117582281 + 0.666667 NA Intergenic Intergenic 61273 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 152-22 chr14 64438180 64438617 + 0.666667 NA intron (NM_005956, intron 16 of 27) MER21C|LTR|ERVL -27101 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 192.667 chr1 21020923 21021337 + 0.666667 NA intron (NM_003760, intron 2 of 31) AluSz6|SINE|Alu -32698 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 289-3 chr2 129846574 129847097 + 0.666667 NA Intergenic L1ME3A|LINE|L1 30656 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 175.667-5 chr1 176382094 176382487 + 0.666667 NA Intergenic MIRb|SINE|MIR -80885 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 169.333-19 chr12 48331335 48331641 + 0.666667 NA Intergenic Intergenic 2508 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 117.333-116 chr9 30935551 30935809 + 0.666667 NA Intergenic Intergenic 445810 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 229-3 chr10 84915901 84916603 + 0.666667 NA Intergenic L1MC3|LINE|L1 282653 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 149-63 chr5 80750338 80750619 + 0.666667 NA intron (NM_002439, intron 12 of 23) L1MA7|LINE|L1 -95495 NM_001290354 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 230-27 chr7 39121484 39122025 + 0.666667 NA intron (NM_001370959, intron 2 of 9) AluSz|SINE|Alu -108187 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 118-43 chr16 5808099 5808317 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR 175741 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 133.333-86 chr4 40455428 40455930 + 0.666667 NA intron (NM_001098634, intron 3 of 6) AluJb|SINE|Alu 46440 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 165.167-53 chr8 23261577 23262179 + 0.666667 NA 3' UTR (NM_001317899, exon 10 of 10) 3' UTR (NM_001317899, exon 10 of 10) 15237 NM_001363183 91782 Hs.5019 NM_152272 ENSG00000147457 CHMP7 - charged multivesicular body protein 7 protein-coding 122.167-3 chr1 105645015 105645435 + 0.666667 NA Intergenic L1MA1|LINE|L1 -26290 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 127.667-66 chr4 79537832 79538072 + 0.666667 NA intron (NR_038826, intron 3 of 3) MER1A|DNA|hAT-Charlie 45359 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 161.834-3 chr2 221203613 221204259 + 0.666667 NA Intergenic Intergenic 368368 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 136.333-40 chr17 78748383 78748711 + 0.666667 NA intron (NM_004762, intron 1 of 12) intron (NM_004762, intron 1 of 12) -11645 NM_001365040 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 199-25 chr5 33479683 33480263 + 0.666667 NA Intergenic MER57B1|LTR|ERV1 39197 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 200-55 chr5 105436474 105436902 + 0.666667 NA Intergenic MER11A|LTR|ERVK 337214 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 143.167-49 chr3 115065498 115065804 + 0.666667 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) 5763 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 146.667-18 chr11 93602816 93603296 + 0.666667 NA Intergenic L1PA5|LINE|L1 -58626 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 CEP295 KIAA1731 centrosomal protein 295 protein-coding 134-27 chr12 20910212 20910496 + 0.666667 NA intron (NM_001371097, intron 13 of 15) L1MC1|LINE|L1 87806 NM_001349920 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 180-25 chr2 191209381 191209758 + 0.666667 NA Intergenic Intergenic -35835 NM_012223 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 123.833-68 chr8 117622538 117622799 + 0.666667 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 101955 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 277.667-15 chr7 77946755 77947240 + 0.666667 NA intron (NM_001366081, intron 14 of 16) AluJb|SINE|Alu 106867 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 132-27 chr14 73352873 73353188 + 0.666667 NA intron (NM_001005743, intron 4 of 12) intron (NM_001005743, intron 4 of 12) 105550 NM_001005745 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 187-6 chr10 43829803 43830248 + 0.666667 NA Intergenic L1MA8|LINE|L1 -15281 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 190.333-49 chr5 114438707 114439127 + 0.666667 NA intron (NM_170775, intron 1 of 5) intron (NM_170775, intron 1 of 5) 5406 NR_103458 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 129.833-60 chr6 107217400 107217993 + 0.666667 NA intron (NM_020381, intron 4 of 7) L1ME4b|LINE|L1 -102181 NM_001367314 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 124.333-9 chr10 19398045 19398349 + 0.666667 NA intron (NM_001142308, intron 28 of 39) L1MA6|LINE|L1 330353 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 178.5-28 chr14 65099529 65099796 + 0.666667 NA intron (NR_073137, intron 1 of 3) intron (NR_073137, intron 1 of 3) 2855 NM_145112 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 271.833-9 chr2 62740060 62740675 + 0.666667 NA intron (NM_001142615, intron 2 of 22) intron (NM_001142615, intron 2 of 22) 33470 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 267.833 chr10 72952570 72953227 + 0.666667 NA intron (NM_001318124, intron 1 of 3) intron (NM_001318124, intron 1 of 3) 1908 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 127.667-69 chr4 160082335 160082689 + 0.666667 NA Intergenic Intergenic -304728 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 216.333-8 chr10 65172604 65173116 + 0.666667 NA Intergenic MIR|SINE|MIR -248342 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 141.667-84 chr4 145933114 145933475 + 0.666667 NA intron (NM_178835, intron 1 of 14) intron (NM_178835, intron 1 of 14) 5529 NM_178835 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 253-20 chr5 146808208 146808834 + 0.666667 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 70264 NR_073526 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 263.333-21 chr7 80625507 80626256 + 0.666667 NA intron (NM_001371077, intron 1 of 14) intron (NM_001371077, intron 1 of 14) 1789 NM_001371078 379.833-2 chr11 95345907 95347035 + 0.666667 NA Intergenic L1M1|LINE|L1 -113996 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 150.333-21 chr11 65597711 65598068 + 0.666667 NA 3' UTR (NM_002419, exon 10 of 10) 3' UTR (NM_002419, exon 10 of 10) -1893 NM_005714 10089 Hs.175218 NM_005714 ENSG00000173338 KCNK7 K2p7.1|TWIK3 potassium two pore domain channel subfamily K member 7 protein-coding 135-18 chr11 102668657 102668949 + 0.666667 NA Intergenic L1PB4|LINE|L1 36966 NM_022122 64066 Hs.534479 NM_022122 ENSG00000137675 MMP27 MMP-27 matrix metallopeptidase 27 protein-coding 173-10 chr10 58085123 58085565 + 0.666667 NA Intergenic Intergenic 182550 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 142-83 chr7 21057713 21058011 + 0.666667 NA Intergenic AluSc8|SINE|Alu 222431 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 120.333-28 chr11 78237333 78237576 + 0.666667 NA intron (NM_012296, intron 3 of 9) L1ME1|LINE|L1 48535 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding 153.333-83 chr8 96675133 96675473 + 0.666667 NA intron (NM_016134, intron 1 of 7) L1ME4b|LINE|L1 30061 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 124.833-12 chr11 47188279 47188554 + 0.666667 NA Intergenic Intergenic -1982 NM_001184974 29763 Hs.334639 NM_016223 ENSG00000165912 PACSIN3 SDPIII protein kinase C and casein kinase substrate in neurons 3 protein-coding 165.667-17 chr11 104831212 104831524 + 0.666667 NA Intergenic Intergenic 67302 NR_034061 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 170-61 chr6 45338215 45338620 + 0.666667 NA intron (NM_001015051, intron 2 of 7) intron (NM_001015051, intron 2 of 7) 10087 NR_103533 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 178.5-12 chr10 106661519 106662197 + 0.666667 NA intron (NM_001206569, intron 17 of 25) intron (NM_001206569, intron 17 of 25) 502848 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 194-25 chr17 79925239 79925873 + 0.666667 NA intron (NR_110850, intron 1 of 5) intron (NR_110850, intron 1 of 5) 1169 NR_110850 101928766 Hs.630666 NR_110850 ENSG00000262585 LINC01979 - long intergenic non-protein coding RNA 1979 ncRNA 116-14 chr11 114334795 114335060 + 0.666667 NA Intergenic L1MC1|LINE|L1 39114 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 123.833-24 chr15 98012946 98013252 + 0.666667 NA intron (NR_146563, intron 2 of 2) L1PA14|LINE|L1 10061 NR_146565 105371008 NR_146563 LINC02251 - long intergenic non-protein coding RNA 2251 ncRNA 152-35 chr3 99069859 99070305 + 0.666667 NA Intergenic Tigger4|DNA|TcMar-Tigger -168387 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 145.667-25 chr13 70018531 70018918 + 0.666667 NA intron (NM_020866, intron 1 of 10) intron (NM_020866, intron 1 of 10) -88489 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 165.167-13 chr14 20342028 20342465 + 0.666667 NA TTS (NR_002312) TTS (NR_002312) 1165 NR_002312 85495 Hs.613102 NR_002312 ENSG00000277209 RPPH1 H1RNA|RPPH1-1 ribonuclease P RNA component H1 ncRNA 157-18 chr12 8667651 8668060 + 0.666667 NA Intergenic Intergenic -5029 NR_123733 8076 Hs.512842 NM_003480 ENSG00000197614 MFAP5 AAT9|MAGP-2|MAGP2|MFAP-5|MP25 microfibril associated protein 5 protein-coding 152.167-76 chr8 129277143 129277699 + 0.666667 NA Intergenic Intergenic -36181 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 122.667-105 chrX 84614185 84614596 + 0.666667 NA Intergenic Intergenic -111937 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 247.5-11 chr16 65803095 65803913 + 0.666667 NA Intergenic Intergenic -227204 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 123.667-50 chr2 114144049 114144379 + 0.666667 NA Intergenic Intergenic -164230 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 140.167-29 chr19 24381290 24381540 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr -217968 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 138.333-96 chr7 12451612 12452032 + 0.666667 NA Intergenic MSTB|LTR|ERVL-MaLR -44607 NR_136261 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 142.5-55 chr4 55126054 55126301 + 0.666667 NA promoter-TSS (NM_002253) promoter-TSS (NM_002253) -582 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 161.833-2 chr1 61314058 61314443 + 0.666667 NA intron (NM_001134673, intron 3 of 10) L2c|LINE|L2 -60732 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 239.5-24 chr8 43518826 43519234 + 0.666667 NA Intergenic MSTA-int|LTR|ERVL-MaLR 226588 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 232.833 chr10 16568492 16568983 + 0.666667 NA Intergenic MER1B|DNA|hAT-Charlie -46858 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 195.333 chr1 51163028 51163585 + 0.666667 NA Intergenic AluSx1|SINE|Alu 61078 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 161.333-69 chr7 25237313 25237758 + 0.666667 NA Intergenic Intergenic -9049 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 143.667-96 chr7 80500563 80500967 + 0.666667 NA intron (NM_001102386, intron 1 of 7) L1M5|LINE|L1 11299 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 186-54 chr7 106946362 106946896 + 0.666667 NA Intergenic Intergenic 81150 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 192.333-25 chr20 37080918 37081396 + 0.666667 NA intron (NM_002895, intron 2 of 21) PRIMA4-int|LTR|ERV1 14840 NM_183404 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 131.667-84 chr3 133400746 133401134 + 0.666667 NA intron (NM_003571, intron 1 of 6) MIRb|SINE|MIR 884 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 230.5-8 chr2 66714647 66715165 + 0.666667 NA Intergenic Intergenic -11679 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 113.667-93 chr4 108447405 108447618 + 0.666667 NA Intergenic Intergenic -109722 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 157.333-74 chr8 131977015 131977308 + 0.666667 NA intron (NR_136616, intron 12 of 23) intron (NR_136616, intron 12 of 23) 60388 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 153.833-18 chr13 51228060 51228370 + 0.666667 NA intron (NM_001242312, intron 1 of 3) (AT)n|Simple_repeat|Simple_repeat 5817 NM_001242312 220108 Hs.71913 NM_145019 ENSG00000150510 FAM124A - family with sequence similarity 124 member A protein-coding 148-44 chr2 139449648 139450022 + 0.666667 NA Intergenic Intergenic 552511 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 124.5-11 chr11 18027928 18028239 + 0.666667 NA intron (NM_004179, intron 5 of 9) intron (NM_004179, intron 5 of 9) 12705 NM_004179 7166 Hs.591999 NM_004179 ENSG00000129167 TPH1 TPRH|TRPH tryptophan hydroxylase 1 protein-coding 230.667-27 chr6 138789043 138789469 + 0.666667 NA intron (NM_015439, intron 5 of 5) intron (NM_015439, intron 5 of 5) -6855 NM_001195037 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 120.5-51 chr2 102289526 102289888 + 0.666667 NA Intergenic Intergenic -21795 NM_001282408 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 117.333-23 chr13 112052876 112053164 + 0.666667 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) -14129 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 151.333-6 chr10 8100045 8100542 + 0.666667 NA Intergenic MIR3|SINE|MIR 45605 NM_001002295 2625 Hs.524134 NM_002051 ENSG00000107485 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 144.5-29 chr14 74737565 74737837 + 0.666667 NA 3' UTR (NM_001318508, exon 8 of 8) 3' UTR (NM_001318508, exon 8 of 8) 24557 NM_001318508 51077 Hs.579828 NM_015962 ENSG00000119616 FCF1 Bka|C14orf111|CGI-35|UTP24 FCF1 rRNA-processing protein protein-coding 152.333-25 chr17 75075979 75076254 + 0.666667 NA Intergenic Intergenic -11649 NM_001271765 9121 Hs.592095 NM_004695 ENSG00000170190 SLC16A5 MCT5|MCT6 solute carrier family 16 member 5 protein-coding 194-2 chr1 65428944 65429490 + 0.666667 NA intron (NM_001003679, intron 2 of 19) L2a|LINE|L2 8501 NM_001198681 54741 Hs.23581 NM_017526 ENSG00000213625 LEPROT LEPR|OB-RGRP|OBRGRP|VPS55 leptin receptor overlapping transcript protein-coding 139-32 chr2 184364800 184365198 + 0.666667 NA Intergenic Intergenic -13976 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 133-58 chr3 43579702 43580058 + 0.666667 NA intron (NM_001346463, intron 5 of 12) AluJb|SINE|Alu 42046 NM_001346466 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 127.667-79 chr6 42297459 42297805 + 0.666667 NA intron (NM_001297573, intron 4 of 17) L1MEd|LINE|L1 -79771 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 148.667-57 chr5 3249039 3249313 + 0.666667 NA Intergenic L1MC1|LINE|L1 71341 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 197.667-33 chr2 178824716 178825049 + 0.666667 NA Intergenic Intergenic -17459 NM_133378 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 138.667-40 chr18 10262372 10262670 + 0.666667 NA Intergenic Intergenic 151849 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 201.333-35 chr6 165789840 165790174 + 0.666667 NA Intergenic Intergenic -127727 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 131-43 chr4 47457462 47457711 + 0.666667 NA intron (NM_001329668, intron 2 of 4) L1M5|LINE|L1 6116 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 120.167-33 chr18 59368880 59369333 + 0.666667 NA Intergenic L1PA10|LINE|L1 -9841 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 193.667-5 chr10 26509312 26509837 + 0.666667 NA intron (NM_019043, intron 6 of 14) intron (NM_019043, intron 6 of 14) 69733 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 321.667-3 chr14 64021147 64021915 + 0.666667 NA intron (NM_015180, intron 36 of 114) intron (NM_015180, intron 36 of 114) 73594 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 129.333-97 chr8 58961602 58961876 + 0.666667 NA intron (NM_014729, intron 1 of 8) AluSx1|SINE|Alu 157408 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 160-50 chr3 6789205 6789648 + 0.666667 NA intron (NR_110125, intron 2 of 3) intron (NR_110125, intron 2 of 3) 16023 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 139.833-82 chr9 90705971 90706314 + 0.666667 NA Intergenic Intergenic -63318 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 149.333-27 chr14 30583770 30584134 + 0.666667 NA intron (NM_017769, intron 2 of 14) L1MB5|LINE|L1 -6595 NR_151720 105370431 Hs.603980 NR_151720 ENSG00000257636 G2E3-AS1 CAT1647 G2E3 antisense RNA 1 ncRNA 194.5-33 chr5 13495727 13496068 + 0.666667 NA Intergenic L1MA8|LINE|L1 448583 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 217.667-3 chr1 53245924 53246337 + 0.666667 NA 3' UTR (NM_017522, exon 16 of 16) 3' UTR (NM_017522, exon 16 of 16) 7520 NR_038953 100507564 Hs.592502 NR_038953 ENSG00000226754 LOC100507564 - uncharacterized LOC100507564 ncRNA 164-46 chr4 46971050 46971531 + 0.666667 NA intron (NM_000809, intron 6 of 8) intron (NM_000809, intron 6 of 8) 22291 NM_001204267 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 187.5-50 chr8 72223189 72223523 + 0.666667 NA intron (NR_033867, intron 12 of 19) intron (NR_033867, intron 12 of 19) 28278 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 176-5 chr10 41883127 41883574 + 0.666667 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 484695 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 123.667-27 chr12 33905743 33906002 + 0.666667 NA Intergenic Intergenic -116624 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 162-20 chr13 52652886 52653326 + 0.666667 NA intron (NM_001130912, intron 2 of 13) intron (NM_001130912, intron 2 of 13) 270 NM_001130912 10910 Hs.281902 NM_006704 ENSG00000165416 SUGT1 SGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone protein-coding 153.667-85 chr9 106057190 106057545 + 0.666667 NA Intergenic MIRc|SINE|MIR 362826 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 171.167-34 chr3 96212522 96212954 + 0.666667 NA Intergenic AluSx|SINE|Alu -147226 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 185.5-11 chr12 12644710 12645088 + 0.666667 NA 3' UTR (NM_001310, exon 4 of 4) 3' UTR (NM_001310, exon 4 of 4) 33023 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 149.5-33 chr2 45840778 45841155 + 0.666667 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 189291 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 163.667-48 chr3 8145617 8146237 + 0.666667 NA Intergenic Intergenic -129620 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 229.333-16 chr2 121373408 121373830 + 0.666667 NA intron (NM_015282, intron 33 of 38) MSTA-int|LTR|ERVL-MaLR -88417 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 218-36 chr5 10186952 10187333 + 0.666667 NA Intergenic Intergenic 62746 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 219-17 chr22 26693320 26693926 + 0.666667 NA intron (NR_110543, intron 1 of 5) intron (NR_110543, intron 1 of 5) 20780 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 128-90 chr8 75362186 75362498 + 0.666667 NA Intergenic HERVP71A-int|LTR|ERV1 -45307 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 138.667-111 chr9 25624815 25625119 + 0.666667 NA Intergenic Intergenic 53891 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 123-21 chr14 46268365 46268605 + 0.666667 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -202874 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 216.333-19 chr18 22927703 22928202 + 0.666667 NA Intergenic AluSz6|SINE|Alu -5376 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 119.5-57 chr20 48258002 48258227 + 0.666667 NA Intergenic L1MD2|LINE|L1 -101797 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 118.333-73 chr3 89600503 89600722 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL 492991 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 134.167-61 chr4 53823033 53823274 + 0.666667 NA Intergenic Intergenic 127252 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 138.667-44 chr2 67225922 67226354 + 0.666667 NA intron (NR_110568, intron 1 of 3) intron (NR_110568, intron 1 of 3) -10819 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 203.667 chr1 39573700 39574199 + 0.666667 NA TTS (NR_125979) TTS (NR_125979) 2841 NM_003819 8761 Hs.169900 NM_003819 ENSG00000090621 PABPC4 APP-1|APP1|PABP4|iPABP poly(A) binding protein cytoplasmic 4 protein-coding 132.5-21 chr13 35348730 35349072 + 0.666667 NA intron (NM_015678, intron 36 of 57) intron (NM_015678, intron 36 of 57) 127788 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 126.667-14 chr11 79444079 79444285 + 0.666667 NA Intergenic Intergenic -3152 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 130.5-9 chr10 64155167 64155626 + 0.666667 NA Intergenic Intergenic -633506 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 127.333-88 chr5 24510928 24511255 + 0.666667 NA intron (NM_001362460, intron 6 of 9) intron (NM_001362460, intron 6 of 9) 133887 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 124.167-44 chr2 30068234 30068498 + 0.666667 NA Intergenic Intergenic -78641 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 139.333-10 chr10 65455945 65456320 + 0.666667 NA Intergenic MIR|SINE|MIR -115293 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 143-19 chr12 66177396 66177698 + 0.666667 NA Intergenic MER21C|LTR|ERVL -7475 NM_001282606 51643 Hs.505934 NM_016056 ENSG00000155957 TMBIM4 CGI-119|GAAP|LFG4|S1R|ZPRO transmembrane BAX inhibitor motif containing 4 protein-coding 203-42 chr7 4715279 4715624 + 0.666667 NA intron (NM_001037165, intron 1 of 8) intron (NM_001037165, intron 1 of 8) 33156 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 117.5-9 chr11 75132801 75133106 + 0.666667 NA Intergenic AluSx|SINE|Alu -18154 NM_001145212 11309 Hs.7884 NM_007256 ENSG00000137491 SLCO2B1 OATP-B|OATP2B1|OATPB|SLC21A9 solute carrier organic anion transporter family member 2B1 protein-coding 140.167-2 chr1 168428969 168429284 + 0.666667 NA Intergenic Intergenic -6470 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 132.667-6 chr1 202774884 202775093 + 0.666667 NA intron (NM_001314042, intron 2 of 27) AluSg|SINE|Alu 34482 NM_001314042 10765 Hs.18891 NM_006618 ENSG00000117139 KDM5B CT31|JARID1B|MRT65|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1 lysine demethylase 5B protein-coding 131-56 chr5 106588246 106588465 + 0.666667 NA Intergenic Intergenic 422659 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 246.833-9 chr2 172981860 172982339 + 0.666667 NA intron (NM_001282901, intron 4 of 24) MIRc|SINE|MIR 53894 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 121.667-81 chr5 169834720 169834977 + 0.666667 NA intron (NR_156756, intron 26 of 52) HAL1|LINE|L1 145647 NM_001129891 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 341-5 chr6 120776021 120776579 + 0.666667 NA Intergenic Intergenic 558180 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 127.667-26 chr14 68641261 68641569 + 0.666667 NA intron (NM_001321818, intron 10 of 10) L1MEj|LINE|L1 -12628 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 159-46 chr20 38081158 38081396 + 0.666667 NA intron (NM_021215, intron 6 of 6) L1PA15|LINE|L1 47531 NM_021215 58490 Hs.278839 NM_021215 ENSG00000101413 RPRD1B C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 220.167-8 chr13 35755510 35755868 + 0.666667 NA Intergenic MER4B|LTR|ERV1 57962 NR_132115 100507114 Hs.236298 NR_132115 ENSG00000236036 LINC00445 - long intergenic non-protein coding RNA 445 ncRNA 114.167-41 chr18 45615218 45615590 + 0.666667 NA promoter-TSS (NM_007163) promoter-TSS (NM_007163) -72 NM_007163 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 150.667-53 chr2 202897040 202897392 + 0.666667 NA intron (NM_018256, intron 5 of 12) intron (NM_018256, intron 5 of 12) -15002 NM_001282911 79800 Hs.444982 NM_024744 ENSG00000138380 CARF ALS2CR8|NYD-SP24 calcium responsive transcription factor protein-coding 114-36 chr12 111742289 111742546 + 0.666667 NA intron (NM_025247, intron 12 of 20) intron (NM_025247, intron 12 of 20) -24516 NM_001204889 217 Hs.604551 NM_000690 ENSG00000111275 ALDH2 ALDH-E2|ALDHI|ALDM aldehyde dehydrogenase 2 family member protein-coding 165.667-20 chr13 43382870 43383251 + 0.666667 NA intron (NM_001347966, intron 6 of 17) intron (NM_001347966, intron 6 of 17) -65792 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 175-56 chr6 145082681 145083359 + 0.666667 NA Intergenic Intergenic 603857 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 144 chr1 118184075 118184546 + 0.666667 NA intron (NM_206996, intron 1 of 48) intron (NM_206996, intron 1 of 48) 918 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 372 chr10 62215291 62215943 + 0.666667 NA intron (NM_145307, intron 9 of 11) L1MC4|LINE|L1 53227 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 195.667-2 chr1 64656761 64657250 + 0.666667 NA intron (NM_020925, intron 12 of 26) intron (NM_020925, intron 12 of 26) 77158 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 131.5-4 chr10 28572977 28573384 + 0.666667 NA intron (NM_100486, intron 3 of 12) AluJb|SINE|Alu 40062 NM_100486 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 121.5-66 chr3 54686429 54686878 + 0.666667 NA intron (NM_018398, intron 11 of 37) MER119|DNA|hAT-Charlie -46796 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 130-22 chr11 117801053 117801393 + 0.666667 NA intron (NM_001367905, intron 1 of 6) MIR3|SINE|MIR -4007 NM_001367904 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 156.667-50 chr2 53377500 53377773 + 0.666667 NA Intergenic MIR|SINE|MIR -390147 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 184.5-43 chr6 49159444 49159783 + 0.666667 NA Intergenic Intergenic 303640 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 122.667-24 chr14 55064062 55064320 + 0.666667 NA intron (NM_144578, intron 3 of 3) AluSz|SINE|Alu 12544 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 247-8 chr17 32807022 32807435 + 0.666667 NA intron (NM_015194, intron 1 of 21) intron (NM_015194, intron 1 of 21) 69896 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 144-17 chr13 91141159 91141548 + 0.666667 NA intron (NR_047004, intron 2 of 3) LTR41C|LTR|ERVL -51736 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 173.833-27 chr2 49627400 49627777 + 0.666667 NA Intergenic Intergenic 346615 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 150.333-7 chr1 227587874 227588191 + 0.666667 NA intron (NR_102302, intron 2 of 5) L1PA11|LINE|L1 24476 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 217.333-41 chr8 135946248 135946657 + 0.666667 NA Intergenic Charlie15b|DNA|hAT-Charlie 488996 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 154.667-11 chr10 105877446 105877837 + 0.666667 NA Intergenic Intergenic -57308 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 135.333-88 chr8 116985781 116986173 + 0.666667 NA intron (NM_001172811, intron 2 of 9) intron (NM_001172811, intron 2 of 9) 35002 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 113.333-85 chr4 168597779 168598009 + 0.666667 NA intron (NM_001166108, intron 2 of 21) Arthur1|DNA|hAT-Tip100 -33684 NM_001166109 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 149-14 chr10 83762831 83763258 + 0.666667 NA Intergenic L1MD|LINE|L1 -85955 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 314-13 chr8 67010917 67011534 + 0.666667 NA intron (NM_001364910, intron 4 of 7) intron (NM_001364910, intron 4 of 7) 17326 NM_001348563 286187 Hs.583933 NM_001013626 ENSG00000178125 PPP1R42 LRRC67|TLLR|TLRR|dtr protein phosphatase 1 regulatory subunit 42 protein-coding 150.833-46 chr6 50216934 50217394 + 0.666667 NA Intergenic Intergenic -167235 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 190-9 chr10 104911546 104912170 + 0.666667 NA intron (NM_014978, intron 2 of 26) MER31B|LTR|ERV1 -245642 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 150.667-65 chr3 84600497 84600737 + 0.666667 NA Intergenic Intergenic 268958 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 188-71 chr9 119556968 119557319 + 0.666667 NA Intergenic Intergenic -187708 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 129.333-78 chr6 71434503 71434755 + 0.666667 NA intron (NR_121615, intron 3 of 7) AluSz|SINE|Alu 13602 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 191.333-21 chr2 218267534 218268093 + 0.666667 NA intron (NM_001087, intron 2 of 10) intron (NM_001087, intron 2 of 10) 2324 NM_001087 14 Hs.83347 NM_001087 ENSG00000127837 AAMP - angio associated migratory cell protein protein-coding 170.333-34 chr18 58383082 58383410 + 0.666667 NA exon (NM_001144966, exon 24 of 30) exon (NM_001144966, exon 24 of 30) -67828 NR_029667 406906 NR_029667 ENSG00000284440 MIR122 MIR122A|MIRN122|MIRN122A|hsa-mir-122|miRNA122|miRNA122A|mir-122 microRNA 122 ncRNA 229-10 chr12 122333865 122334514 + 0.666667 NA intron (NM_198240, intron 11 of 23) intron (NM_198240, intron 11 of 23) -61353 NR_045382 100507066 Hs.624253 NR_045382 CLIP1-AS1 - CLIP1 antisense RNA 1 ncRNA 154.333-20 chr13 35825564 35825833 + 0.666667 NA intron (NM_001195415, intron 6 of 13) intron (NM_001195415, intron 6 of 13) 29969 NM_001195416 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 117.667-105 chr5 102512262 102512484 + 0.666667 NA Intergenic Intergenic -13372 NM_001308014 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 193.167-32 chr7 40678636 40679199 + 0.666667 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 301022 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 194-47 chr5 81371352 81371755 + 0.666667 NA intron (NM_130767, intron 3 of 14) intron (NM_130767, intron 3 of 14) 22581 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 135.667-12 chr10 18788620 18788913 + 0.666667 NA Intergenic L4_C_Mam|LINE|RTE-X 129335 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 133-37 chr17 56612832 56613066 + 0.666667 NA Intergenic MIR|SINE|MIR 19250 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 163.5-63 chr5 167914905 167915261 + 0.666667 NA intron (NM_001368145, intron 2 of 26) MLT1D|LTR|ERVL-MaLR 160154 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 218.833-8 chr12 52237793 52238238 + 0.666667 NA intron (NM_005556, intron 3 of 8) intron (NM_005556, intron 3 of 8) 4772 NM_005556 3855 Hs.411501 NM_005556 ENSG00000135480 KRT7 CK7|K2C7|K7|SCL keratin 7 protein-coding 238-25 chr6 49850612 49851156 + 0.666667 NA intron (NM_170609, intron 3 of 6) intron (NM_170609, intron 3 of 6) 15651 NM_170609 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 155.333-64 chr3 65068882 65069306 + 0.666667 NA Intergenic L1M5|LINE|L1 -381094 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 200.5-38 chr6 133529490 133529930 + 0.666667 NA 3' UTR (NM_001301012, exon 18 of 18) 3' UTR (NM_001301012, exon 18 of 18) 288211 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 131.167-75 chr7 91428921 91429436 + 0.666667 NA Intergenic L1ME3A|LINE|L1 164745 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 185.167-40 chr8 75289604 75290272 + 0.666667 NA Intergenic L2a|LINE|L2 -11049 NR_103849 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 124.833-82 chr7 33367146 33367351 + 0.666667 NA intron (NM_198428, intron 16 of 22) L1MC5|LINE|L1 237684 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 143.667-29 chr12 55276775 55277109 + 0.666667 NA Intergenic L1MA10|LINE|L1 18290 NM_001005493 283365 Hs.554555 NM_001005493 ENSG00000188324 OR6C6 - olfactory receptor family 6 subfamily C member 6 protein-coding 125-97 chr8 117684265 117684524 + 0.666667 NA Intergenic MER47A|DNA|TcMar-Tigger 163681 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 121.5-53 chr2 83850613 83850827 + 0.666667 NA Intergenic Intergenic 327906 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 147.333-67 chr5 30403236 30403459 + 0.666667 NA Intergenic Intergenic 522787 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 297.167-3 chr17 62344566 62345328 + 0.666667 NA Intergenic L1PB1|LINE|L1 -25271 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 114.667-2 chr1 57201715 57201920 + 0.666667 NA intron (NM_001353980, intron 5 of 5) L2b|LINE|L2 221295 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 126.667-101 chr8 106508897 106509191 + 0.666667 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 61120 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 173.167-53 chr9 21795243 21795853 + 0.666667 NA Intergenic Intergenic -7088 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 194.667-36 chr20 29652820 29653336 + 0.666667 NA Intergenic Intergenic 104359 NR_133643 105379478 Hs.98121 NR_133643 FAM242B - family with sequence similarity 242 member B ncRNA 275.333-18 chr5 127175476 127176110 + 0.666667 NA Intergenic L1PBa|LINE|L1 -102301 NM_001164478 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 139.833-10 chr11 15681537 15682027 + 0.666667 NA intron (NM_001293172, intron 1 of 2) L1ME2|LINE|L1 37897 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 153.333-29 chr17 53970414 53970672 + 0.666667 NA Intergenic MER5B|DNA|hAT-Charlie 147616 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 175.667-69 chr8 84398631 84399061 + 0.666667 NA intron (NM_001354319, intron 2 of 8) AluSx|SINE|Alu -16638 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 154.667-36 chr2 64103672 64104056 + 0.666667 NA intron (NM_020651, intron 3 of 6) intron (NM_020651, intron 3 of 6) 40556 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 400-7 chr7 724985 725848 + 0.666667 NA intron (NM_001164759, intron 1 of 10) intron (NM_001164759, intron 1 of 10) -1283 NR_075098 54919 Hs.535896 NM_017802 ENSG00000164818 DNAAF5 CILD18|HEATR2 dynein axonemal assembly factor 5 protein-coding 228-4 chr10 86480474 86481178 + 0.666667 NA intron (NM_001318328, intron 4 of 18) MLT1J|LTR|ERVL-MaLR 40958 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 199-30 chr6 56060746 56061122 + 0.666667 NA non-coding (NR_134850, exon 27 of 31) non-coding (NR_134850, exon 27 of 31) 30728 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 139-79 chr8 133791100 133791628 + 0.666667 NA Intergenic MIR|SINE|MIR -14012 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 137.833-23 chr2 178297685 178297914 + 0.666667 NA intron (NM_001201480, intron 2 of 25) intron (NM_001201480, intron 2 of 25) -22443 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 249.167-3 chr11 15820571 15821144 + 0.666667 NA Intergenic MLT1J1|LTR|ERVL-MaLR 148764 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 128.667-82 chr4 59131203 59131455 + 0.666667 NA Intergenic Intergenic 117756 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 169.333-74 chr8 132829713 132830239 + 0.666667 NA intron (NM_001277196, intron 13 of 19) MLT1D|LTR|ERVL-MaLR -36982 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 124.667-121 chr8 82571036 82571258 + 0.666667 NA Intergenic L1MEc|LINE|L1 -340957 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 169-12 chr12 115427377 115427822 + 0.666667 NA Intergenic L2c|LINE|L2 721055 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 156.5-22 chr11 102519985 102520381 + 0.666667 NA TTS (NM_002423) TTS (NM_002423) 10564 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 119-22 chr12 33057732 33058004 + 0.666667 NA Intergenic Intergenic -161022 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 149.667-32 chr17 63322737 63323059 + 0.666667 NA intron (NM_025185, intron 10 of 25) intron (NM_025185, intron 10 of 25) 117369 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 115.167-51 chr2 20150356 20150608 + 0.666667 NA Intergenic Intergenic 74648 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 154-73 chr7 105909147 105909571 + 0.666667 NA Intergenic Intergenic -32774 NM_152749 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 113.833-64 chr4 86423381 86423766 + 0.666667 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) 29622 NM_002753 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 114.167-102 chr9 137491101 137491395 + 0.666667 NA intron (NM_001098537, intron 20 of 34) FAM|SINE|Alu -31914 NM_001130971 26012 Hs.455336 NM_015537 ENSG00000165802 NSMF HH9|NELF NMDA receptor synaptonuclear signaling and neuronal migration factor protein-coding 119-47 chr18 13295135 13295581 + 0.666667 NA intron (NM_181482, intron 2 of 5) intron (NM_181482, intron 2 of 5) 17253 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 167.5-30 chr2 52415520 52415879 + 0.666667 NA Intergenic Intergenic 45051 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 171-4 chr1 166478982 166479425 + 0.666667 NA intron (NR_146890, intron 1 of 2) intron (NR_146890, intron 1 of 2) 10836 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 129.667-67 chr3 19553411 19553708 + 0.666667 NA Intergenic L1M1|LINE|L1 -238628 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 201.667-46 chr8 20459931 20460470 + 0.666667 NA Intergenic Intergenic 154726 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 127.833-46 chr20 41652856 41653386 + 0.666667 NA Intergenic HAL1|LINE|L1 -34744 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 194.667-63 chr8 84808619 84808948 + 0.666667 NA intron (NM_001287244, intron 3 of 7) L1PB1|LINE|L1 102856 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 114.667-64 chr20 24048487 24048747 + 0.666667 NA Intergenic Intergenic -59838 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 162-13 chr11 7539576 7540107 + 0.666667 NA intron (NM_003621, intron 1 of 23) intron (NM_003621, intron 1 of 23) 25842 NM_003621 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 126.5-20 chr13 40703318 40703719 + 0.666667 NA Intergenic MSTB-int|LTR|ERVL-MaLR 24369 NR_031723 100313896 NR_031723 ENSG00000211491 MIR320D1 MIR320D-1|MIRN320D1|mir-320d-1 microRNA 320d-1 ncRNA 122.833-55 chr22 49829238 49829749 + 0.666667 NA Intergenic Intergenic -1620 NM_001304808 23774 Hs.127950 NM_014577 ENSG00000100425 BRD1 BRL|BRPF1|BRPF2 bromodomain containing 1 protein-coding 180-24 chr2 176935813 176936145 + 0.666667 NA Intergenic Intergenic 276432 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 132.833-69 chr9 75368430 75368899 + 0.666667 NA Intergenic Intergenic 280150 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 193.5-46 chr5 44208334 44208937 + 0.666667 NA Intergenic Intergenic -180097 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 145.833-12 chr10 104012152 104012460 + 0.666667 NA intron (NM_014720, intron 13 of 18) Charlie18a|DNA|hAT-Charlie 35880 NR_030760 100126326 NR_030760 ENSG00000283788 MIR936 MIRN936|hsa-mir-936 microRNA 936 ncRNA 195-4 chr1 204410197 204410727 + 0.666667 NA exon (NM_032833, exon 1 of 2) exon (NM_032833, exon 1 of 2) 1355 NM_032833 84919 Hs.304376 NM_032833 ENSG00000158615 PPP1R15B CREP|MSSGM2 protein phosphatase 1 regulatory subunit 15B protein-coding 215.333-14 chr14 82840030 82840446 + 0.666667 NA Intergenic Intergenic 197606 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 196.667-45 chr5 91938371 91938829 + 0.666667 NA Intergenic Intergenic -555283 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 146-34 chr2 43523584 43523914 + 0.666667 NA intron (NM_001083953, intron 22 of 37) intron (NM_001083953, intron 22 of 37) 72225 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 127.833-60 chr5 122100012 122100296 + 0.666667 NA Intergenic Helitron1Na_Mam|RC|Helitron -21895 NM_002317 4015 Hs.102267 NM_002317 ENSG00000113083 LOX AAT10 lysyl oxidase protein-coding 124.667-17 chr10 107821780 107822092 + 0.666667 NA Intergenic MIRb|SINE|MIR 247357 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 144-61 chr5 88164830 88165284 + 0.666667 NA Intergenic Intergenic 103788 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 136.333-55 chr21 18471102 18471373 + 0.666667 NA Intergenic Intergenic -67452 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 230-2 chr10 72773372 72773890 + 0.666667 NA intron (NR_073062, intron 3 of 9) L1MA4|LINE|L1 52602 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 126.667-3 chr1 92162501 92162839 + 0.666667 NA Intergenic LTR16E2|LTR|ERVL -6254 NM_015237 23285 Hs.21554 NM_015237 ENSG00000189195 KIAA1107 - KIAA1107 protein-coding 168.667-67 chr6 43819365 43819811 + 0.666667 NA Intergenic MER21-int|LTR|ERVL 32745 NR_149142 285857 Hs.582798 NR_149142 ENSG00000283215 LINC02537 - long intergenic non-protein coding RNA 2537 ncRNA 156.833-42 chr4 141314622 141314907 + 0.666667 NA Intergenic MamGypLTR3a|LTR|Gypsy 17853 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 140.333-47 chr3 50692918 50693225 + 0.666667 NA intron (NM_004947, intron 1 of 52) L1MB3|LINE|L1 17991 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 152.333-6 chr10 23639077 23639514 + 0.666667 NA Intergenic Intergenic -55432 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 173.333-21 chr14 65320608 65321088 + 0.666667 NA Intergenic Intergenic 14335 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 164-8 chr10 103992750 103993037 + 0.666667 NA intron (NM_001304743, intron 3 of 17) intron (NM_001304743, intron 3 of 17) 25753 NM_014720 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 210.667-3 chr10 18893298 18893696 + 0.666667 NA Intergenic Intergenic -155304 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 147-69 chr5 83014622 83014889 + 0.666667 NA Intergenic Intergenic 49582 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 234.5-11 chr17 31993065 31993745 + 0.666667 NA intron (NM_001321207, intron 10 of 14) intron (NM_001321207, intron 10 of 14) -13978 NM_001321350 114659 Hs.514071 NM_052888 ENSG00000185158 LRRC37B LRRC37 leucine rich repeat containing 37B protein-coding 161.667-20 chr10 74468175 74468586 + 0.666667 NA intron (NM_001369124, intron 6 of 9) intron (NM_001369124, intron 6 of 9) 60944 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 130.333-76 chr5 92590812 92591131 + 0.666667 NA Intergenic MIR|SINE|MIR 980372 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 209-43 chr8 121112858 121113549 + 0.666667 NA Intergenic Intergenic -301157 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 132.167-73 chr9 127357259 127357546 + 0.666667 NA intron (NR_104591, intron 21 of 26) intron (NR_104591, intron 21 of 26) -39736 NM_001271711 29988 Hs.179522 NM_014580 ENSG00000136856 SLC2A8 GLUT8|GLUTX1 solute carrier family 2 member 8 protein-coding 204.333-24 chr15 70695611 70695971 + 0.666667 NA intron (NM_018003, intron 2 of 18) intron (NM_018003, intron 2 of 18) 6491 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 149-77 chrX 56980983 56981624 + 0.666667 NA intron (NR_027139, intron 3 of 4) AluSx1|SINE|Alu 14238 NR_027139 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 185-9 chr11 87610998 87611583 + 0.666667 NA Intergenic L1MA9|LINE|L1 108121 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 208.333-34 chr5 78803113 78803464 + 0.666667 NA intron (NM_000046, intron 6 of 7) intron (NM_000046, intron 6 of 7) -154516 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 130.333-26 chr12 61036657 61037022 + 0.666667 NA Intergenic Intergenic 1156000 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 124.5-72 chr8 3036150 3036434 + 0.666667 NA intron (NM_033225, intron 50 of 69) intron (NM_033225, intron 50 of 69) -307841 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 186.667-22 chr14 66859542 66859952 + 0.666667 NA intron (NM_001024218, intron 4 of 21) L1MA2|LINE|L1 -329693 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 145.834-6 chr5 96931534 96932216 + 0.666667 NA Intergenic Intergenic -4205 NM_005575 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 114-48 chr16 81892380 81892784 + 0.666667 NA intron (NM_002661, intron 11 of 32) intron (NM_002661, intron 11 of 32) 113291 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 195.5-26 chr2 82107823 82108455 + 0.666667 NA Intergenic MER110-int|LTR|ERV1 -641193 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 127.333-110 chr8 55169744 55169967 + 0.666667 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 67827 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 141.667-93 chr6 48526022 48526436 + 0.666667 NA Intergenic Intergenic -457540 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 120.667-113 chr8 78832152 78832481 + 0.666667 NA Intergenic MER1B|DNA|hAT-Charlie -5213 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 195-18 chr2 69459332 69459733 + 0.666667 NA 3' UTR (NM_014911, exon 22 of 22) 3' UTR (NM_014911, exon 22 of 22) -21904 NM_001002756 27247 Hs.430439 NM_015700 ENSG00000169599 NFU1 CGI-33|HIRIP|HIRIP5|MMDS1|NIFUC|Nfu|NifU NFU1 iron-sulfur cluster scaffold protein-coding 126-36 chr17 82446124 82446445 + 0.666667 NA intron (NR_036518, intron 1 of 3) intron (NR_036518, intron 1 of 3) 3442 NM_001193655 79415 Hs.163113 NM_001033046 ENSG00000178927 CYBC1 C17orf62|Eros cytochrome b-245 chaperone 1 protein-coding 186.667-35 chr2 68180152 68180650 + 0.666667 NA 3' UTR (NM_000945, exon 6 of 6) 3' UTR (NM_000945, exon 6 of 6) 22513 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 235.5-24 chr20 37370263 37370686 + 0.666667 NA intron (NM_198291, intron 2 of 13) AluSx1|SINE|Alu 24346 NM_198291 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 159.667-70 chr5 54665864 54666279 + 0.666667 NA non-coding (NR_104659, exon 2 of 3) non-coding (NR_104659, exon 2 of 3) 37253 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 114.667-82 chr3 104915122 104915368 + 0.666667 NA Intergenic L1ME3C|LINE|L1 -451468 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 210.667-6 chr11 5090333 5090709 + 0.666667 NA Intergenic AluYm1|SINE|Alu 21149 NM_001348221 79296 NM_001348221 ENSG00000273085 OR52E1 OR52E1P olfactory receptor family 52 subfamily E member 1 (gene/pseudogene) protein-coding 297.333-5 chr17 62985129 62986047 + 0.666667 NA intron (NM_025185, intron 1 of 25) L1M2c|LINE|L1 19353 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 231.667-7 chr12 1232664 1233080 + 0.666667 NA intron (NR_027948, intron 12 of 19) intron (NR_027948, intron 12 of 19) 205124 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 123.333-35 chr13 94062414 94062765 + 0.666667 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) 125402 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 174.5-19 chr18 46833383 46833660 + 0.666667 NA intron (NR_148699, intron 8 of 11) L1ME1|LINE|L1 -76468 NM_001307986 29906 Hs.465025 NM_013305 ENSG00000101638 ST8SIA5 SIAT8-E|SIAT8E|ST8SiaV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 protein-coding 173-46 chr6 12207436 12207745 + 0.666667 NA Intergenic Intergenic -82771 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 228.834-2 chr2 50595848 50596594 + 0.666667 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 100041 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 136.667-53 chr22 17308154 17308509 + 0.666667 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -41598 NR_038398 27442 Hs.517394 NR_038398 ENSG00000241832 CECR3 - cat eye syndrome chromosome region, candidate 3 ncRNA 120.333-127 chrX 97543706 97543901 + 0.666667 NA intron (NR_125391, intron 1 of 2) AluSz|SINE|Alu 20732 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 208.5-2 chr1 52783241 52783825 + 0.666667 NA intron (NM_024646, intron 4 of 13) L2b|LINE|L2 57080 NM_024646 79699 Hs.476280 NM_024646 ENSG00000162378 ZYG11B ZYG11 zyg-11 family member B, cell cycle regulator protein-coding 153.333-87 chrX 35581016 35581544 + 0.666667 NA Intergenic MSTB|LTR|ERVL-MaLR -217062 NM_001370158 139604 NM_001099921 ENSG00000189023 MAGEB16 - MAGE family member B16 protein-coding 188.833-26 chr4 61826912 61827195 + 0.666667 NA intron (NM_001371343, intron 9 of 23) intron (NM_001371343, intron 9 of 23) 334712 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 142-65 chr3 147009768 147010027 + 0.666667 NA Intergenic Intergenic 87974 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 246.333-23 chr8 31802555 31803291 + 0.666667 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 163171 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 185.5-54 chr9 2852028 2852460 + 0.666667 NA Intergenic HERV16-int|LTR|ERVL -8149 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 159.167-69 chr8 125984669 125985191 + 0.666667 NA Intergenic Intergenic -33733 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 120.333-106 chr6 156972784 156973077 + 0.666667 NA intron (NM_020732, intron 5 of 19) intron (NM_020732, intron 5 of 19) -63497 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 226.333-3 chr10 43015390 43015890 + 0.666667 NA Intergenic L1M4|LINE|L1 18077 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 155.667-71 chr7 11464075 11464610 + 0.666667 NA intron (NM_015204, intron 9 of 26) intron (NM_015204, intron 9 of 26) 367856 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 113.333-70 chr3 5249468 5249820 + 0.666667 NA TTS (NR_039953) TTS (NR_039953) 611 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 125-2 chr1 37877725 37877950 + 0.666667 NA intron (NR_158630, intron 17 of 24) L1ME3G|LINE|L1 -18245 NM_005955 4520 Hs.471991 NM_005955 ENSG00000188786 MTF1 MTF-1|ZRF metal regulatory transcription factor 1 protein-coding 142.667-37 chr16 71235157 71235479 + 0.666667 NA Intergenic Intergenic -4596 NM_001198543 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 155.667-64 chr5 122916616 122916921 + 0.666667 NA intron (NM_014035, intron 1 of 6) LTR90A|LTR|LTR 71155 NM_014035 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 158-11 chr11 82184191 82184629 + 0.666667 NA intron (NR_120571, intron 3 of 7) (TCCT)n|Simple_repeat|Simple_repeat 219503 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 195.333-51 chr7 4535933 4536546 + 0.666667 NA Intergenic Intergenic -146056 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 149.333-55 chr2 176930830 176931135 + 0.666667 NA Intergenic L1ME1|LINE|L1 281429 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 220.667-23 chr3 19223534 19224169 + 0.666667 NA intron (NM_144633, intron 1 of 15) (TATTTAA)n|Simple_repeat|Simple_repeat 75341 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 162-55 chr4 181054938 181055322 + 0.666667 NA Intergenic Intergenic 104019 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 161-75 chr8 57565145 57565436 + 0.666667 NA Intergenic Intergenic -180859 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 235.834-7 chr6 124107930 124108568 + 0.666667 NA intron (NM_001040214, intron 1 of 6) L1MB1|LINE|L1 -174756 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 284.5-13 chr5 30164668 30165472 + 0.666667 NA Intergenic Intergenic 284510 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 222.333-20 chr20 55658785 55659337 + 0.666667 NA Intergenic Intergenic -231864 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 126-91 chr7 99614841 99615140 + 0.666667 NA Intergenic Intergenic -1956 NM_001350986 221785 Hs.446297 NM_145115 ENSG00000197037 ZSCAN25 ZNF498 zinc finger and SCAN domain containing 25 protein-coding 126.833-49 chr4 135761704 135761978 + 0.666667 NA Intergenic MER67D|LTR|ERV1 126252 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 156.333-83 chr7 77236287 77236737 + 0.666667 NA intron (NM_020879, intron 2 of 18) MIRb|SINE|MIR -36693 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 137-102 chr9 102664795 102665013 + 0.666667 NA Intergenic L1MA2|LINE|L1 145267 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 177.667-24 chr14 53357053 53357416 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger 203880 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 164.667-51 chr4 27411908 27412215 + 0.666667 NA Intergenic L1ME3|LINE|L1 194582 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 166.333-74 chr7 96073314 96073759 + 0.666667 NA intron (NM_004411, intron 14 of 16) intron (NM_004411, intron 14 of 16) 146220 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 162.833-8 chr11 58737761 58738127 + 0.666667 NA Intergenic MER110-int|LTR|ERV1 -5970 NM_005838 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 133.333-73 chr3 21808806 21809030 + 0.666667 NA Intergenic L1MDb|LINE|L1 -57708 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 147.167-21 chr13 71070081 71070363 + 0.666667 NA intron (NR_047699, intron 1 of 3) L1PA11|LINE|L1 55081 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 178-21 chr16 72714227 72714685 + 0.666667 NA Intergenic L1M4c|LINE|L1 -49486 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 126.667-81 chr6 25309634 25309986 + 0.666667 NA intron (NM_001173977, intron 2 of 36) AluSg4|SINE|Alu 30436 NM_017640 55604 Hs.649550 NM_017640 ENSG00000079691 CARMIL1 CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 capping protein regulator and myosin 1 linker 1 protein-coding 211-24 chr2 188682457 188682969 + 0.666667 NA Intergenic L1PA16|LINE|L1 107410 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 167.333-15 chr11 19824720 19825148 + 0.666667 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -64851 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 187-14 chr15 76633905 76634414 + 0.666667 NA intron (NR_148227, intron 21 of 32) L1PA10|LINE|L1 47512 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 232.667-15 chr2 96178940 96179562 + 0.666667 NA Intergenic Intergenic -29165 NR_046322 285033 Hs.58648 NM_001037228 STARD7-AS1 - STARD7 antisense RNA 1 ncRNA 138.667-13 chr10 106881133 106881406 + 0.666667 NA intron (NM_001206569, intron 2 of 25) MIRb|SINE|MIR 283437 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 124.333-87 chr6 65723574 65724047 + 0.666667 NA Intergenic Intergenic -16584 NM_001142800 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 193.167-8 chr10 74198488 74198952 + 0.666667 NA intron (NM_001369124, intron 1 of 9) intron (NM_001369124, intron 1 of 9) 21957 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 149.833-25 chr21 28924925 28925379 + 0.666667 NA Intergenic AluJb|SINE|Alu -39779 NR_047510 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 159.333-49 chr3 156705755 156706158 + 0.666667 NA 3' UTR (NM_001184718, exon 6 of 6) 3' UTR (NM_001184718, exon 6 of 6) 29292 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 155-58 chr4 151784349 151784699 + 0.666667 NA Intergenic LTR8B|LTR|ERV1 -23501 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 263-11 chr2 137950901 137951438 + 0.666667 NA Intergenic L1PB3|LINE|L1 -13304 NM_001024075 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 223-6 chr11 108679844 108680449 + 0.666667 NA intron (NM_004398, intron 6 of 17) intron (NM_004398, intron 6 of 17) 15077 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 148.333-110 chr8 136611402 136611667 + 0.666667 NA intron (NR_147196, intron 2 of 5) L1MA5A|LINE|L1 80736 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 167.667-79 chr6 122155908 122156215 + 0.666667 NA Intergenic AluY|SINE|Alu -243490 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 156.333-69 chr4 38420607 38421014 + 0.666667 NA non-coding (NR_110951, exon 8 of 8) non-coding (NR_110951, exon 8 of 8) 53896 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 142.667-62 chr21 20028672 20028968 + 0.666667 NA Intergenic Intergenic -129065 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 247.667 chr1 71445902 71446362 + 0.666667 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 364808 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 134.667-72 chr4 72525438 72525873 + 0.666667 NA intron (NM_014243, intron 3 of 21) intron (NM_014243, intron 3 of 21) 43566 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 132.333-35 chr13 25272384 25272711 + 0.666667 NA intron (NM_004685, intron 2 of 13) L1PA17|LINE|L1 14941 NM_004685 9107 Hs.643702 NM_004685 ENSG00000139505 MTMR6 - myotubularin related protein 6 protein-coding 121-81 chr7 48790477 48790764 + 0.666667 NA Intergenic Intergenic -133927 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 152.833-58 chr6 36090892 36091193 + 0.666667 NA intron (NM_001315, intron 8 of 11) intron (NM_001315, intron 8 of 11) -39471 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 131-38 chr3 49580897 49581244 + 0.666667 NA intron (NM_003458, intron 1 of 11) AluSz6|SINE|Alu 26593 NM_003458 8927 Hs.194684 NM_003458 ENSG00000164061 BSN ZNF231 bassoon presynaptic cytomatrix protein protein-coding 161-15 chr12 119111213 119111638 + 0.666667 NA intron (NM_194286, intron 2 of 12) intron (NM_194286, intron 2 of 12) 65059 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 123.5-81 chr8 13011153 13011369 + 0.666667 NA intron (NM_020844, intron 3 of 4) AluSx1|SINE|Alu -1003 NM_001099677 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 183.333-24 chr18 21011925 21012371 + 0.666667 NA intron (NM_005406, intron 13 of 32) AluSz6|SINE|Alu 99665 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 123-9 chr10 115935984 115936251 + 0.666667 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 258672 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 137.833-7 chr10 71095413 71095748 + 0.666667 NA Intergenic L1ME1|LINE|L1 -116990 NM_170744 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 178.334-2 chr17 70674042 70674556 + 0.666667 NA Intergenic Intergenic 504764 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 114.333-87 chr3 99046670 99046970 + 0.666667 NA Intergenic L1PB4|LINE|L1 -145125 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 160.167-37 chr22 24392811 24393076 + 0.666667 NA intron (NM_001254732, intron 13 of 14) MLT1G1|LTR|ERVL-MaLR -30654 NM_001278500 135 Hs.197029 NM_000675 ENSG00000128271 ADORA2A A2aR|ADORA2|RDC8 adenosine A2a receptor protein-coding 197.167-42 chr5 56290314 56290717 + 0.666667 NA Intergenic Intergenic -57185 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 124.333-54 chr20 7631134 7631386 + 0.666667 NA Intergenic L1MD1|LINE|L1 259652 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 146.167-29 chr2 13012713 13013145 + 0.666667 NA Intergenic Intergenic -5916 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 133.667-52 chr2 136226535 136226940 + 0.666667 NA Intergenic Intergenic -108582 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 141.667-116 chr9 71335578 71335924 + 0.666667 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 111220 NM_001366141 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 119-4 chr1 88258319 88258776 + 0.666667 NA Intergenic Intergenic -425597 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 119.833-87 chr8 126747857 126748109 + 0.666667 NA Intergenic Intergenic -189505 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 440.5 chr17 59563382 59564619 + 0.666667 NA Intergenic Intergenic -1610 NM_001166301 79665 Hs.29403 NM_024612 ENSG00000108406 DHX40 ARG147|DDX40|PAD DEAH-box helicase 40 protein-coding 171.5-64 chr8 135391619 135392095 + 0.666667 NA Intergenic Intergenic -65599 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 166.833-20 chr18 62877146 62877653 + 0.666667 NA intron (NM_194449, intron 4 of 16) intron (NM_194449, intron 4 of 16) 161858 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 141.333-20 chr12 28410228 28410646 + 0.666667 NA intron (NM_001352082, intron 9 of 13) L1MEc|LINE|L1 -219699 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 188-14 chr11 47010021 47010446 + 0.666667 NA intron (NR_103472, intron 2 of 7) intron (NR_103472, intron 2 of 7) 73472 NR_103472 79096 Hs.368296 NM_024113 ENSG00000149179 C11orf49 - chromosome 11 open reading frame 49 protein-coding 119.667-18 chr12 71357169 71357472 + 0.666667 NA Intergenic L2c|LINE|L2 -82478 NR_110596 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 331.334-3 chr6 165788110 165788845 + 0.666667 NA Intergenic AluSp|SINE|Alu -126197 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 222.833-11 chr2 234586542 234587049 + 0.666667 NA Intergenic Intergenic -89714 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 212-14 chr17 34321610 34322189 + 0.666667 NA TTS (NM_005623) TTS (NM_005623) 2464 NM_005623 6355 Hs.271387 NM_005623 ENSG00000108700 CCL8 HC14|MCP-2|MCP2|SCYA10|SCYA8 C-C motif chemokine ligand 8 protein-coding 127.333-74 chr3 15963491 15963779 + 0.666667 NA Intergenic L2b|LINE|L2 89864 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 135.5-73 chr8 49355096 49355352 + 0.666667 NA Intergenic L1MC1|LINE|L1 156956 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 158.333-38 chr18_GL383571v1_alt 34971 35246 + 0.666667 NA Intergenic Intergenic 127339 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 165.667-33 chr2 21971524 21971878 + 0.666667 NA Intergenic Intergenic -261049 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 163.5-72 chr8 79963140 79963433 + 0.666667 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 66973 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 143.667-40 chr14 67782331 67782657 + 0.666667 NA intron (NM_015346, intron 21 of 41) MER5B|DNA|hAT-Charlie 34096 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 165.833-33 chr2 50445810 50446258 + 0.666667 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -98278 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 126-4 chr1 68589179 68589523 + 0.666667 NA Intergenic MER2|DNA|TcMar-Tigger -92269 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 126.334-2 chr13 111007707 111008260 + 0.666667 NA Intergenic Intergenic 41956 NR_126378 104355135 Hs.649708 NR_126378 LINC00431 - long intergenic non-protein coding RNA 431 ncRNA 143.167-9 chr1 217362476 217362767 + 0.666667 NA Intergenic Intergenic -224919 NM_001243511 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 167.667-44 chr2 99747409 99747794 + 0.666667 NA intron (NM_001025108, intron 8 of 23) intron (NM_001025108, intron 8 of 23) -257584 NM_001321454 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 131-4 chr10 32518260 32518591 + 0.666667 NA exon (NM_001026383, exon 12 of 18) exon (NM_001026383, exon 12 of 18) 72285 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 194.833-32 chrX 29911652 29912088 + 0.666667 NA intron (NM_014271, intron 6 of 10) MER63C|DNA|hAT-Blackjack -303693 NM_002364 4113 Hs.113824 NM_002364 ENSG00000099399 MAGEB2 CT3.2|DAM6|MAGE-XP-2 MAGE family member B2 protein-coding 155.333-98 chr8 142199638 142200000 + 0.666667 NA intron (NR_024378, intron 1 of 2) intron (NR_024378, intron 1 of 2) 1463 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 154.167-24 chr16 81823127 81823535 + 0.666667 NA intron (NM_002661, intron 2 of 32) intron (NM_002661, intron 2 of 32) 44040 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 168-4 chr1 159130948 159131386 + 0.666667 NA Intergenic L2b|LINE|L2 -40448 NM_001127173 57863 Hs.365689 NM_021189 ENSG00000162706 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding 120.833-73 chr8 126770215 126770434 + 0.666667 NA Intergenic Intergenic -211846 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 273-15 chr7 46479619 46480334 + 0.666667 NA Intergenic Intergenic 217146 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 133.5-4 chr1 112422977 112423345 + 0.666667 NA intron (NM_018704, intron 3 of 5) L1ME1|LINE|L1 26947 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 168.333-30 chr2 182783364 182783721 + 0.666667 NA non-coding (NR_073365, exon 24 of 24) non-coding (NR_073365, exon 24 of 24) 67285 NM_018981 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 146.5-29 chr14 66542294 66542660 + 0.666667 NA intron (NM_001024218, intron 1 of 21) L2a|LINE|L2 35070 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 162.5-20 chr14 96331969 96332376 + 0.666667 NA intron (NM_018036, intron 10 of 41) intron (NM_018036, intron 10 of 41) 31169 NM_018036 55102 Hs.168241 NM_018036 ENSG00000066739 ATG2B C14orf103 autophagy related 2B protein-coding 183.333-32 chr2 169680440 169680764 + 0.666667 NA intron (NM_001085447, intron 2 of 8) L1ME1|LINE|L1 13803 NM_001085447 129881 Hs.370111 NM_001085447 ENSG00000154479 CCDC173 C2orf77 coiled-coil domain containing 173 protein-coding 128.667-3 chr1 70004108 70004441 + 0.666667 NA intron (NM_001370785, intron 11 of 26) intron (NM_001370785, intron 11 of 26) 84952 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 202.333-44 chr7 28593699 28594155 + 0.666667 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -92206 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 133.5-19 chr12 19632706 19632998 + 0.666667 NA Intergenic L2c|LINE|L2 192253 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 118.333-47 chr18 8343842 8344101 + 0.666667 NA intron (NM_002845, intron 21 of 30) intron (NM_002845, intron 21 of 30) 23063 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 166.5-56 chr7 111906753 111907198 + 0.666667 NA intron (NM_001363540, intron 13 of 52) MLT1D|LTR|ERVL-MaLR 98470 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 174-43 chr4 53504255 53504694 + 0.666667 NA intron (NR_046622, intron 3 of 3) Tigger1|DNA|TcMar-Tigger 4397 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 182.5-18 chr19 10484869 10485369 + 0.666667 NA Intergenic AluJo|SINE|Alu 17652 NM_012289 9817 Hs.465870 NM_012289 ENSG00000079999 KEAP1 INrf2|KLHL19 kelch like ECH associated protein 1 protein-coding 161.667-74 chr7 5567758 5568177 + 0.666667 NA Intergenic Intergenic -24849 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 140.833-53 chr6 153915840 153916144 + 0.666667 NA Intergenic MIR3|SINE|MIR -94504 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 152.667-8 chr1 214797877 214798177 + 0.666667 NA Intergenic L1PA17|LINE|L1 194832 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 313.5-10 chr7 14667193 14667772 + 0.666667 NA intron (NM_001350722, intron 13 of 25) L4_A_Mam|LINE|RTE-X 173968 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 131.167-71 chr7 24477333 24477621 + 0.666667 NA Intergenic Intergenic -95975 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 123.667-39 chr16 74182159 74182405 + 0.666667 NA Intergenic L1ME3G|LINE|L1 33239 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 113.333-48 chr18 22840339 22840552 + 0.666667 NA Intergenic Intergenic -53608 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 134.5-44 chr2 84881547 84881831 + 0.666667 NA promoter-TSS (NM_001277053) promoter-TSS (NM_001277053) -605 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 133.5-28 chr17 33114484 33114714 + 0.666667 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 121748 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 185.167-12 chr12 86615359 86615777 + 0.666667 NA intron (NM_001351285, intron 2 of 8) L4_A_Mam|LINE|RTE-X 129581 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 117.167-96 chr8 127523836 127524214 + 0.666667 NA Intergenic Intergenic -41886 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 173.667-27 chr2 60867675 60868036 + 0.666667 NA intron (NR_033980, intron 1 of 2) intron (NR_033980, intron 1 of 2) 13459 NR_033980 400957 Hs.170358 NR_033980 ENSG00000228414 LINC01185 - long intergenic non-protein coding RNA 1185 ncRNA 162.333-46 chr3 4637421 4637902 + 0.666667 NA intron (NM_001168272, intron 5 of 60) intron (NM_001168272, intron 5 of 60) 113929 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 114.333-13 chr10 70338153 70338569 + 0.666667 NA intron (NR_103467, intron 1 of 2) intron (NR_103467, intron 1 of 2) 38418 NM_001278213 55222 Hs.7778 NM_018205 ENSG00000172731 LRRC20 - leucine rich repeat containing 20 protein-coding 165.5-14 chr12 77993779 77994181 + 0.666667 NA intron (NM_001024383, intron 5 of 39) intron (NM_001024383, intron 5 of 39) 163086 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 133.333-124 chr8 136052893 136053108 + 0.666667 NA Intergenic Intergenic -477798 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 139.5-70 chr7 145220893 145221550 + 0.666667 NA Intergenic L1MEc|LINE|L1 -385168 NM_001042482 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 185.667-17 chr14 52456167 52456625 + 0.666667 NA intron (NM_001160047, intron 17 of 20) intron (NM_001160047, intron 17 of 20) 96109 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 283.334-5 chr2 57294695 57295564 + 0.666667 NA Intergenic LTR40b|LTR|ERVL -612522 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 146.5-32 chr15 79164784 79165064 + 0.666667 NA Intergenic FLAM_A|SINE|Alu -44864 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 185.333-16 chr13 68199032 68199439 + 0.666667 NA Intergenic Intergenic 686090 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 200.667-2 chr1 110049522 110050166 + 0.666667 NA intron (NR_073071, intron 18 of 21) (T)n|Simple_repeat|Simple_repeat 15220 NM_033088 85369 Hs.584996 NM_033088 ENSG00000143093 STRIP1 FAM40A|FAR11A striatin interacting protein 1 protein-coding 183.5-21 chr17 31172165 31172710 + 0.666667 NA intron (NM_001042492, intron 5 of 57) intron (NM_001042492, intron 5 of 57) 77460 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 120.5-29 chr14 30394372 30394680 + 0.666667 NA Intergenic Intergenic -164597 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 276.833-6 chr4 182883480 182884226 + 0.666667 NA Intergenic Charlie1a|DNA|hAT-Charlie 33400 NM_001351743 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 127.333-37 chr15 50484205 50484492 + 0.666667 NA exon (NM_005154, exon 12 of 20) exon (NM_005154, exon 12 of 20) 59943 NM_001128610 9101 Hs.443731 NM_005154 ENSG00000138592 USP8 HumORF8|PITA4|SPG59|UBPY ubiquitin specific peptidase 8 protein-coding 205.333-33 chr21 37424718 37425365 + 0.666667 NA intron (NM_001347721, intron 2 of 11) intron (NM_001347721, intron 2 of 11) 4742 NM_130438 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 217.667-31 chr4 48048335 48048792 + 0.666667 NA Intergenic LTR81C|LTR|Gypsy 31791 NM_207330 152519 Hs.134190 NM_207330 ENSG00000163293 NIPAL1 NPAL1 NIPA like domain containing 1 protein-coding 155.333-38 chr18 2468540 2468822 + 0.666667 NA Intergenic L1MC5a|LINE|L1 102824 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 190.333-61 chr9 112000177 112000622 + 0.666667 NA Intergenic MIR|SINE|MIR 68299 NR_039814 100616114 NR_039814 ENSG00000266315 MIR4668 mir-4668 microRNA 4668 ncRNA 131-16 chr12 123652481 123652787 + 0.666667 NA intron (NM_001271866, intron 6 of 10) intron (NM_001271866, intron 6 of 10) -18479 NM_001143850 79867 Hs.167165 NM_024809 ENSG00000168778 TCTN2 C12orf38|JBTS24|MKS8|TECT2 tectonic family member 2 protein-coding 117.667-92 chr4 116554728 116554938 + 0.666667 NA Intergenic Intergenic 255108 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 141.167-55 chr4 60766936 60767254 + 0.666667 NA Intergenic L1MA3|LINE|L1 -155524 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 140.5-69 chr6 165635278 165635729 + 0.666667 NA intron (NM_006661, intron 1 of 22) intron (NM_006661, intron 1 of 22) 26597 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 225.833-12 chr3 166742826 166743260 + 0.666667 NA Intergenic L1M4a1|LINE|L1 -155640 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 183.667-44 chr21 15791837 15792256 + 0.666667 NA intron (NM_001283042, intron 5 of 24) intron (NM_001283042, intron 5 of 24) 62064 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 220 chr1 143246740 143247591 + 0.666667 NA Intergenic Intergenic 175427 NR_027354 645166 Hs.744183 NR_027354 LSP1P5 - LSP1 pseudogene 5 pseudo 122.833-2 chr1 50096757 50096971 + 0.666667 NA intron (NM_001324208, intron 1 of 6) intron (NM_001324208, intron 1 of 6) -7045 NM_001144776 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 221.333-13 chr2 124181777 124182347 + 0.666667 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 156775 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 114.667-127 chr8 114080509 114080913 + 0.666667 NA Intergenic L1ME3D|LINE|L1 -643772 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 134.333-61 chr2 121523626 121523996 + 0.666667 NA intron (NM_015282, intron 6 of 38) intron (NM_015282, intron 6 of 38) -7069 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 148.167-36 chr2 64070069 64070469 + 0.666667 NA Intergenic MER101-int|LTR|ERV1 -50841 NM_001005739 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 118-67 chr20 61724980 61725308 + 0.666667 NA intron (NM_001252339, intron 1 of 14) intron (NM_001252339, intron 1 of 14) -5396 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 136-15 chr11 31785618 31785945 + 0.666667 NA non-coding (NR_160916, exon 11 of 11) non-coding (NR_160916, exon 11 of 11) 14880 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 117.167-20 chr14 46824461 46824779 + 0.666667 NA Intergenic Intergenic -172839 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 153.5-13 chr11 31375627 31376089 + 0.666667 NA intron (NM_181706, intron 2 of 4) intron (NM_181706, intron 2 of 4) 5998 NM_181706 120526 Hs.187269 NM_181706 ENSG00000170946 DNAJC24 DPH4|JJJ3|ZCSL3 DnaJ heat shock protein family (Hsp40) member C24 protein-coding 169.667-56 chr5 14590556 14590953 + 0.666667 NA intron (NM_019018, intron 1 of 7) intron (NM_019018, intron 1 of 7) 8962 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 227.5-12 chr15 64076227 64076840 + 0.666667 NA intron (NM_001014812, intron 2 of 3) intron (NM_001014812, intron 2 of 3) 17305 NM_032231 84191 Hs.439548 NM_032231 ENSG00000166797 CIAO2A CIA2A|FAM96A cytosolic iron-sulfur assembly component 2A protein-coding 116.333-30 chr12 22931468 22931787 + 0.666667 NA Intergenic MER5A1|DNA|hAT-Charlie -244009 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 138.333-84 chr4 106306432 106306802 + 0.666667 NA intron (NM_001290768, intron 2 of 26) intron (NM_001290768, intron 2 of 26) -8993 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 193.333-49 chr7 24532739 24533099 + 0.666667 NA Intergenic MSTC|LTR|ERVL-MaLR -40533 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 161.167-24 chr16 60059008 60059440 + 0.666667 NA Intergenic MIRb|SINE|MIR 203871 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 137.667-56 chr2 105146640 105146961 + 0.666667 NA Intergenic L1ME3|LINE|L1 2687 NR_136172 105373984 Hs.570237 NR_136172 ENSG00000226508 LINC01918 - long intergenic non-protein coding RNA 1918 ncRNA 158.167-46 chr7 3647610 3648046 + 0.666667 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) 346576 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 148-23 chr12 99182777 99183158 + 0.666667 NA intron (NM_152788, intron 14 of 25) L1MA3|LINE|L1 -27877 NM_001352189 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 216.667-49 chr8 129606174 129606683 + 0.666667 NA intron (NR_130917, intron 1 of 3) L1PA4|LINE|L1 -31410 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 117-101 chr6 114214609 114214831 + 0.666667 NA intron (NR_125845, intron 8 of 9) intron (NR_125845, intron 8 of 9) -151843 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 178.333-52 chr8 139467786 139468210 + 0.666667 NA Intergenic Intergenic 235125 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 122.833-77 chr6 155191731 155191953 + 0.666667 NA intron (NM_012454, intron 13 of 25) intron (NM_012454, intron 13 of 25) -25124 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 142-50 chr2 188986143 188986448 + 0.666667 NA intron (NM_000090, intron 4 of 50) intron (NM_000090, intron 4 of 50) -8134 NR_039947 100616324 NR_039947 ENSG00000283238 MIR1245B - microRNA 1245b ncRNA 224.167-12 chr2 26908699 26909261 + 0.666667 NA intron (NM_020134, intron 2 of 12) intron (NM_020134, intron 2 of 12) 60556 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 154.667-2 chr1 110726918 110727315 + 0.666667 NA Intergenic Intergenic -52176 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 161-38 chr3 31641690 31642108 + 0.666667 NA Intergenic L1ME3B|LINE|L1 -62314 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 179.167-38 chr5 106527783 106528261 + 0.666667 NA Intergenic Intergenic 482992 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 129.667-42 chr16 82968260 82968497 + 0.666667 NA intron (NR_110937, intron 1 of 2) intron (NR_110937, intron 1 of 2) 21920 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 118.333-52 chr2 140356621 140356885 + 0.666667 NA intron (NM_018557, intron 74 of 90) intron (NM_018557, intron 74 of 90) 229932 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 229.333-26 chr4 137928877 137929298 + 0.666667 NA Intergenic Intergenic -159927 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 125.333-51 chr15 62199040 62199304 + 0.666667 NA intron (NR_148210, intron 1 of 3) MER58C|DNA|hAT-Charlie 4146 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 223-30 chr6 65215425 65215866 + 0.666667 NA intron (NM_001292009, intron 12 of 43) Tigger1|DNA|TcMar-Tigger -85773 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 191.667-23 chr2 129418446 129418970 + 0.666667 NA Intergenic Intergenic -144817 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 155.667-40 chr2 62144259 62144631 + 0.666667 NA Intergenic MER34A|LTR|ERV1 -51670 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 236.5-22 chr3 108615590 108616022 + 0.666667 NA intron (NM_014648, intron 4 of 32) intron (NM_014648, intron 4 of 32) 26084 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 201-24 chr22 24336589 24337073 + 0.666667 NA intron (NM_015330, intron 9 of 16) MER47A|DNA|TcMar-Tigger -5277 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 148.667-74 chr7 84970707 84971083 + 0.666667 NA Intergenic Intergenic 151036 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 168.667-23 chr15 63637315 63637740 + 0.666667 NA exon (NM_003922, exon 64 of 78) exon (NM_003922, exon 64 of 78) -36700 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 141-76 chr5 177266546 177266875 + 0.666667 NA intron (NM_172349, intron 15 of 23) intron (NM_172349, intron 15 of 23) 37009 NM_001031677 53917 Hs.16258 NM_130781 ENSG00000169228 RAB24 - RAB24, member RAS oncogene family protein-coding 128.333-50 chr17 76866332 76866627 + 0.666667 NA Intergenic AluSz|SINE|Alu -1925 NM_001199172 146664 Hs.144531 NM_144677 ENSG00000167889 MGAT5B GnT-IX|GnT-VB alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B protein-coding 186.167-30 chr4 30367642 30368085 + 0.666667 NA Intergenic MER2B|DNA|TcMar-Tigger -352506 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 149.667-8 chr10 6499430 6499756 + 0.666667 NA intron (NM_001282645, intron 3 of 16) intron (NM_001282645, intron 3 of 16) 80683 NM_006257 5588 Hs.498570 NM_006257 ENSG00000065675 PRKCQ PRKCT|nPKC-theta protein kinase C theta protein-coding 136.167-77 chr8 88758008 88758342 + 0.666667 NA Intergenic Intergenic -430692 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 135.333-84 chr8 90420120 90420537 + 0.666667 NA Intergenic Intergenic 185735 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 184.333-61 chr8 21972752 21973419 + 0.666667 NA intron (NM_001100161, intron 5 of 27) MIR|SINE|MIR -51049 NM_001286680 10361 Hs.131055 NM_182795 ENSG00000158806 NPM2 - nucleophosmin/nucleoplasmin 2 protein-coding 155-11 chr10 59379533 59379789 + 0.666667 NA Intergenic Intergenic -16480 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 159.667-64 chr3 184991361 184991730 + 0.666667 NA intron (NM_001009921, intron 41 of 46) intron (NM_001009921, intron 41 of 46) 161515 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 200.333-23 chr20 55280128 55280444 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -142757 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 117.167-22 chr14 60345568 60345904 + 0.666667 NA Intergenic L1ME3D|LINE|L1 22540 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 172.667-16 chr11 47928060 47928409 + 0.666667 NA Intergenic Intergenic -52325 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 144-56 chr4 137800035 137800416 + 0.666667 NA Intergenic L2|LINE|L2 254494 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 137.5-47 chr2 161052401 161052788 + 0.666667 NA Intergenic L2c|LINE|L2 -84361 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 120-26 chr13 28182360 28182682 + 0.666667 NA intron (NM_175854, intron 4 of 18) intron (NM_175854, intron 4 of 18) -43347 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 227.167-6 chr10 118325182 118325686 + 0.666667 NA intron (NM_022063, intron 7 of 8) intron (NM_022063, intron 7 of 8) 16890 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 134.333-76 chr3 59983885 59984145 + 0.666667 NA intron (NM_001320901, intron 5 of 6) intron (NM_001320901, intron 5 of 6) 96894 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 227.333-31 chr5 2938754 2939347 + 0.666667 NA Intergenic L1M4|LINE|L1 21196 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 189.167-7 chr1 215483566 215483912 + 0.666667 NA Intergenic MamSINE1|SINE|tRNA-RTE -83565 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 124-45 chr18 51223716 51224063 + 0.666667 NA Intergenic MLT1K|LTR|ERVL-MaLR -26208 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 138.5-9 chr10 10055590 10056069 + 0.666667 NA Intergenic Intergenic -2893 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 201.333-25 chr3 146002802 146003238 + 0.666667 NA Intergenic Intergenic 66165 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 154.167-22 chr16 7659800 7660083 + 0.666667 NA intron (NM_145893, intron 9 of 13) intron (NM_145893, intron 9 of 13) 327096 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 185.167-44 chr9 13098637 13098969 + 0.666667 NA Intergenic Intergenic -126170 NR_132976 106635615 NR_132976 SNORD137 - small nucleolar RNA, C/D box 137 snoRNA 139.5-33 chr20 15023767 15024048 + 0.666667 NA intron (NM_001351663, intron 5 of 17) MIRb|SINE|MIR -94389 NR_072988 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 151.333-87 chr8 88266176 88266428 + 0.666667 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 61181 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 160.333-7 chr10 77240538 77241183 + 0.666667 NA intron (NM_001322838, intron 3 of 29) intron (NM_001322838, intron 3 of 29) 100029 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 215.833-5 chr14 50177901 50178335 + 0.666667 NA intron (NM_006939, intron 7 of 22) L2|LINE|L2 53460 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 136-38 chr2 146098525 146098803 + 0.666667 NA Intergenic ERVL-B4-int|LTR|ERVL -488393 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 201-15 chr13 107394679 107395054 + 0.666667 NA intron (NM_001080396, intron 1 of 2) (AAGGAAC)n|Simple_repeat|Simple_repeat -73903 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 137.167-74 chr9 69844148 69844502 + 0.666667 NA intron (NR_131757, intron 1 of 2) intron (NR_131757, intron 1 of 2) 23508 NR_131756 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 149-11 chr1 183708172 183708455 + 0.666667 NA intron (NM_001297669, intron 2 of 18) HERVH48-int|LTR|ERV1 -54997 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding 146.5-60 chr4 33646321 33646857 + 0.666667 NA Intergenic Intergenic 393304 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 169.333-36 chr2 99169207 99169610 + 0.666667 NA exon (NM_138798, exon 7 of 7) exon (NM_138798, exon 7 of 7) 11650 NM_001320417 129531 Hs.14222 NM_138798 ENSG00000158411 MITD1 - microtubule interacting and trafficking domain containing 1 protein-coding 183.667-7 chr1 87016724 87017078 + 0.666667 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) 102266 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 139.167-25 chr15 75945745 75946178 + 0.666667 NA intron (NM_138573, intron 5 of 5) MER44B|DNA|TcMar-Tigger 42083 NM_147188 26263 Hs.591115 NM_012170 ENSG00000167196 FBXO22 FBX22|FISTC1 F-box protein 22 protein-coding 150.667-50 chr2 101923552 101923877 + 0.666667 NA Intergenic Intergenic -59751 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 163-15 chr13 107345677 107345938 + 0.666667 NA intron (NM_001080396, intron 1 of 2) L1MB2|LINE|L1 -24844 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 183.167-52 chr6 46609999 46610674 + 0.666667 NA intron (NM_016593, intron 7 of 11) intron (NM_016593, intron 7 of 11) 42482 NM_016593 51302 Hs.387367 NM_016593 ENSG00000146233 CYP39A1 - cytochrome P450 family 39 subfamily A member 1 protein-coding 161.167-8 chr11 62562244 62562839 + 0.666667 NA intron (NM_001404, intron 7 of 9) AluSg|SINE|Alu -2235 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 146.333-51 chr2 76937107 76937440 + 0.666667 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -48692 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 127.833-64 chr5 161950103 161950346 + 0.666667 NA intron (NR_126372, intron 1 of 2) intron (NR_126372, intron 1 of 2) 50972 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 133.833-27 chr14 85072151 85072545 + 0.666667 NA Intergenic Tigger5b|DNA|TcMar-Tigger -199584 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 206.667-30 chr3 22536777 22537161 + 0.666667 NA Intergenic Intergenic 579830 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 129.333-99 chr8 73664414 73664717 + 0.666667 NA intron (NM_001164383, intron 1 of 9) L1ME1|LINE|L1 82275 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 149.333-53 chr2 135921532 135921873 + 0.666667 NA intron (NM_001293312, intron 8 of 14) MER5A1|DNA|hAT-Charlie -45259 NM_005915 4175 Hs.444118 NM_005915 ENSG00000076003 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 187.333-67 chr5 111186799 111187358 + 0.666667 NA Intergenic Intergenic -36505 NM_001323375 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 175.167-31 chr21 15955169 15955587 + 0.666667 NA Intergenic AluSx1|SINE|Alu -115110 NR_136541 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 171.834-3 chr12 78969168 78969724 + 0.666667 NA intron (NM_001291901, intron 1 of 9) L2a|LINE|L2 -76246 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 126.167-97 chrX 65635915 65636125 + 0.666667 NA Intergenic Intergenic -31634 NM_002444 4478 Hs.87752 NM_002444 ENSG00000147065 MSN HEL70|IMD50 moesin protein-coding 160.333-26 chr2 39873712 39874052 + 0.666667 NA Intergenic Intergenic -43752 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 129-23 chr11 114993994 114994311 + 0.666667 NA Intergenic Intergenic 315625 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 123.167-30 chr15 58158355 58158695 + 0.666667 NA intron (NM_020980, intron 1 of 5) MIRb|SINE|MIR 20144 NM_001320635 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 138.667-102 chr8 51515724 51516074 + 0.666667 NA intron (NM_144651, intron 4 of 22) intron (NM_144651, intron 4 of 22) 293546 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 216.333-36 chr5 85507846 85508259 + 0.666667 NA Intergenic L1M|LINE|L1 -774392 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 180-48 chr6 55579841 55580318 + 0.666667 NA promoter-TSS (NM_019036) promoter-TSS (NM_019036) -865 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 155.5-12 chr13 96899875 96900288 + 0.666667 NA Intergenic MIRc|SINE|MIR 84091 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 174.333-37 chr3 87950990 87951472 + 0.666667 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -31345 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 120-48 chr19 42657973 42658342 + 0.666667 NA Intergenic LTR8B|LTR|ERV1 -63233 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 252.333-6 chr10 56159257 56159743 + 0.666667 NA Intergenic Intergenic 201759 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 143.5-95 chr9 124724713 124725065 + 0.666667 NA intron (NM_033334, intron 2 of 9) intron (NM_033334, intron 2 of 9) 31179 NR_029782 406956 NR_029782 ENSG00000207737 MIR181B2 MIRN181B2|mir-181b-2 microRNA 181b-2 ncRNA 138.667-114 chr9 77485636 77485977 + 0.666667 NA intron (NR_121184, intron 2 of 4) Tigger1|DNA|TcMar-Tigger 38157 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 185.833-4 chr1 171989784 171990110 + 0.666667 NA intron (NM_001278252, intron 4 of 14) HAL1|LINE|L1 125755 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 258.667-17 chr3 167602660 167603249 + 0.666667 NA intron (NM_001348951, intron 6 of 18) Tigger3a|DNA|TcMar-Tigger 50988 NM_001348952 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 120.5-25 chr12 9662931 9663182 + 0.666667 NA Intergenic L1M3d|LINE|L1 -6657 NM_001004419 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 164-23 chr17 61615405 61615802 + 0.666667 NA Intergenic AluY|SINE|Alu -24384 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 118.833-58 chr3 188401283 188401689 + 0.666667 NA intron (NM_001167671, intron 2 of 10) L2c|LINE|L2 167180 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 159.667-34 chr14 52432189 52432650 + 0.666667 NA exon (NM_020784, exon 21 of 21) exon (NM_020784, exon 21 of 21) 118107 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 188.333-63 chr9 26241246 26241756 + 0.666667 NA Intergenic Intergenic 174826 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 169.667-58 chr5 66296434 66296864 + 0.666667 NA Intergenic L1MC2|LINE|L1 -87203 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 175.833-3 chr1 162699726 162700343 + 0.666667 NA intron (NM_006182, intron 2 of 17) intron (NM_006182, intron 2 of 17) 67570 NM_006182 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 207-6 chr11 55972633 55973004 + 0.666667 NA Intergenic Intergenic -4355 NM_001005491 282770 Hs.554525 NM_001005491 ENSG00000174970 OR10AG1 OR11-160 olfactory receptor family 10 subfamily AG member 1 protein-coding 190.667-27 chr20 11517181 11517599 + 0.666667 NA Intergenic Intergenic -244007 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 158.667-86 chr7 50678266 50678970 + 0.666667 NA intron (NM_001371009, intron 2 of 15) intron (NM_001371009, intron 2 of 15) 26683 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 121.667-96 chr8 64247894 64248407 + 0.666667 NA intron (NR_125826, intron 1 of 4) L2b|LINE|L2 120408 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 138.5-33 chr16 62736130 62736422 + 0.666667 NA Intergenic Intergenic -699838 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 191.5-18 chr15 81334069 81334475 + 0.666667 NA intron (NM_001080532, intron 21 of 21) intron (NM_001080532, intron 21 of 21) 9939 NR_120365 101929655 Hs.696654 NR_120365 TMC3-AS1 - TMC3 antisense RNA 1 ncRNA 265.333-5 chr11 72975905 72976652 + 0.666667 NA intron (NM_014824, intron 8 of 19) intron (NM_014824, intron 8 of 19) 161867 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 131.333-100 chr8 105874544 105874889 + 0.666667 NA intron (NR_125796, intron 2 of 7) intron (NR_125796, intron 2 of 7) 185787 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 157.167-47 chr4 170372535 170372862 + 0.666667 NA Intergenic Intergenic 146107 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 170.333-54 chr4 88395680 88396004 + 0.666667 NA intron (NM_001165136, intron 5 of 21) intron (NM_001165136, intron 5 of 21) 17103 NM_017912 55008 Hs.529317 NM_017912 ENSG00000138642 HERC6 - HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding 144.333-8 chr1 165859565 165859925 + 0.666667 NA intron (NM_012474, intron 1 of 6) AluJb|SINE|Alu 32131 NM_001363568 7371 Hs.458360 NM_012474 ENSG00000143179 UCK2 TSA903|UK|UMPK uridine-cytidine kinase 2 protein-coding 185.834-9 chr7 31598585 31599235 + 0.666667 NA intron (NM_194300, intron 8 of 12) L1ME3Cz|LINE|L1 45908 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 157.333-12 chr11 83644017 83644471 + 0.666667 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) 38181 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 150.333-61 chr20 18205149 18205401 + 0.666667 NA Intergenic L1MC|LINE|L1 60176 NR_028402 57325 Hs.488051 NM_020536 ENSG00000149474 KAT14 ATAC2|CRP2BP|CSRP2BP|PRO1194|dJ717M23.1 lysine acetyltransferase 14 protein-coding 154.667-54 chr5 32138960 32139312 + 0.666667 NA intron (NM_022130, intron 2 of 3) intron (NM_022130, intron 2 of 3) 35183 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 199.667-6 chr10 78343351 78343814 + 0.666667 NA Intergenic Intergenic 76240 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 119.5-54 chr20 1147937 1148158 + 0.666667 NA intron (NM_006814, intron 4 of 6) intron (NM_006814, intron 4 of 6) 29445 NM_001323410 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 206.167-5 chr18 12363977 12364580 + 0.666667 NA intron (NM_006796, intron 5 of 16) L1ME3C|LINE|L1 12998 NM_006796 10939 Hs.726355 NM_006796 ENSG00000141385 AFG3L2 SCA28|SPAX5 AFG3 like matrix AAA peptidase subunit 2 protein-coding 170.5-64 chr7 14629398 14629750 + 0.666667 NA intron (NM_001350717, intron 13 of 24) intron (NM_001350717, intron 13 of 24) 211876 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 152.667-19 chr11 115944431 115944850 + 0.666667 NA Intergenic Intergenic -184440 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 134.667-44 chr18 71759476 71759789 + 0.666667 NA intron (NR_126324, intron 1 of 4) intron (NR_126324, intron 1 of 4) 22594 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 115.333-55 chr2 132480343 132480624 + 0.666667 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 46772 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 150-13 chr12 1948510 1948939 + 0.666667 NA intron (NR_135060, intron 9 of 10) intron (NR_135060, intron 9 of 10) -12148 NR_036546 100271702 Hs.737031 NR_036546 ENSG00000235049 LINC00940 - long intergenic non-protein coding RNA 940 ncRNA 184.667-42 chr5 89397866 89398310 + 0.666667 NA intron (NR_136221, intron 5 of 6) L1MA10|LINE|L1 -493983 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 131.667-46 chr17 5985989 5986295 + 0.666667 NA Intergenic Intergenic -84472 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 119.667-69 chr4 39225319 39225516 + 0.666667 NA intron (NM_025132, intron 15 of 36) intron (NM_025132, intron 15 of 36) 42888 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 133-76 chr5 159368266 159368590 + 0.666667 NA Intergenic Harlequin-int|LTR|ERV1 36910 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 134-31 chr12 77079369 77079623 + 0.666667 NA Intergenic MER33|DNA|hAT-Charlie -13927 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 173.667-5 chr10 20612274 20612704 + 0.666667 NA Intergenic HAL1|LINE|L1 60519 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 148-51 chr3 72426393 72426645 + 0.666667 NA intron (NM_012234, intron 1 of 3) intron (NM_012234, intron 1 of 3) 20104 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 304.5-2 chr10 26734478 26735285 + 0.666667 NA intron (NM_001321978, intron 8 of 9) intron (NM_001321978, intron 8 of 9) 37180 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 173.333-72 chr9 25110536 25110895 + 0.666667 NA Intergenic Intergenic -564818 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 129.667-85 chr5 126111576 126112002 + 0.666667 NA Intergenic Intergenic -67788 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 173-59 chr9 112012870 112013186 + 0.666667 NA Intergenic Intergenic 80928 NR_039814 100616114 NR_039814 ENSG00000266315 MIR4668 mir-4668 microRNA 4668 ncRNA 126.667-93 chr7 112226933 112227176 + 0.666667 NA intron (NM_021994, intron 1 of 11) intron (NM_021994, intron 1 of 11) 20359 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 129-48 chr21 46623771 46624051 + 0.666667 NA Intergenic Intergenic -11684 NM_001535 3275 Hs.154163 NM_001535 ENSG00000160310 PRMT2 HRMT1L1 protein arginine methyltransferase 2 protein-coding 156.667-5 chr1 111527399 111527902 + 0.666667 NA intron (NM_001081976, intron 1 of 5) L1MC1|LINE|L1 -14359 NM_001370216 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 242.833-16 chr8 135521335 135521812 + 0.666667 NA intron (NM_006558, intron 2 of 8) MIRb|SINE|MIR 64117 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 164.5-11 chr11 58033582 58034001 + 0.666667 NA intron (NM_001005212, intron 1 of 2) intron (NM_001005212, intron 1 of 2) 2838 NM_001005186 219952 Hs.690432 NM_001005186 ENSG00000279051 OR6Q1 OR11-226 olfactory receptor family 6 subfamily Q member 1 (gene/pseudogene) protein-coding 142.667-78 chr5 31014371 31014622 + 0.666667 NA Intergenic Intergenic -179190 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 147.333-81 chr7 33529470 33529843 + 0.666667 NA intron (NM_198428, intron 20 of 22) intron (NM_198428, intron 20 of 22) -375259 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 126.667-79 chr5 155497319 155497722 + 0.666667 NA Intergenic MIRb|SINE|MIR 483765 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 193.167-24 chr2 220653861 220654397 + 0.666667 NA Intergenic Intergenic -747564 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 255.833-17 chr6 15427541 15427995 + 0.666667 NA intron (NM_004973, intron 3 of 17) intron (NM_004973, intron 3 of 17) 178913 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 181.666-5 chr5 17153708 17154237 + 0.666667 NA intron (NR_027253, intron 2 of 2) AluSq|SINE|Alu 2020 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 191.667-12 chr11 107310842 107311166 + 0.666667 NA Intergenic Intergenic 146842 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 137.333-99 chr8 117003379 117003588 + 0.666667 NA intron (NM_001172811, intron 2 of 9) intron (NM_001172811, intron 2 of 9) 52508 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 201-47 chr9 21929047 21929446 + 0.666667 NA Intergenic Intergenic -37893 NR_024274 51198 Hs.721053 NM_016349 CDKN2A-DT C9orf53|CDKN2A-AS1|bA149I2.3 CDKN2A divergent transcript ncRNA 132.667-65 chr3 181901719 181901964 + 0.666667 NA Intergenic Intergenic -50523 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 118.334-4 chr16 75427859 75428451 + 0.666667 NA intron (NM_006324, intron 1 of 6) L1ME1|LINE|L1 5348 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 124.833-14 chr11 97346232 97346456 + 0.666667 NA Intergenic Intergenic 837919 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 182.667-49 chr5 150314902 150315337 + 0.666667 NA Intergenic L1MB5|LINE|L1 -12214 NM_001012301 340075 Hs.591252 NM_001012301 ENSG00000183876 ARSI ASI|SPG66 arylsulfatase family member I protein-coding 146-6 chr10 24781816 24782105 + 0.666667 NA Intergenic L3|LINE|CR1 -58073 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 174.667-9 chr10 106323867 106324250 + 0.666667 NA Intergenic Intergenic 183893 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 163.833-65 chr9 106162934 106163313 + 0.666667 NA Intergenic L1MC4|LINE|L1 -437805 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 163.833-28 chr17 59062294 59062754 + 0.666667 NA intron (NR_148346, intron 11 of 23) intron (NR_148346, intron 11 of 23) 44356 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 158.167-10 chr14 83375524 83375879 + 0.666667 NA Intergenic L1MB5|LINE|L1 733069 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 169-22 chr17 50720709 50721033 + 0.666667 NA intron (NM_006107, intron 1 of 10) intron (NM_006107, intron 1 of 10) 1268 NM_016424 51747 Hs.130293 NM_006107 ENSG00000108848 LUC7L3 CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A LUC7 like 3 pre-mRNA splicing factor protein-coding 165.333-59 chr7 26924965 26925444 + 0.666667 NA Intergenic Intergenic -60614 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 197.833-28 chr5 31477437 31478018 + 0.666667 NA intron (NM_013235, intron 15 of 34) intron (NM_013235, intron 15 of 34) 54366 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 129.833-38 chr21 19859033 19859390 + 0.666667 NA Intergenic Intergenic 40544 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 230.667-9 chr16 76393873 76394387 + 0.666667 NA intron (NR_136213, intron 3 of 23) intron (NR_136213, intron 3 of 23) 84278 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 155.333-96 chr8 118546110 118546566 + 0.666667 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -74663 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 212.5-27 chr6 136579465 136579852 + 0.666667 NA intron (NM_005923, intron 25 of 29) L1MC1|LINE|L1 -28839 NM_001198617 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 172-24 chr15 59406239 59406721 + 0.666667 NA Intergenic Intergenic -31706 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 260-16 chr4 32327365 32327933 + 0.666667 NA Intergenic Intergenic -23389 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 120.5-84 chr8 58562927 58563144 + 0.666667 NA intron (NM_001348340, intron 2 of 9) L1MB7|LINE|L1 9774 NM_005625 6386 Hs.200804 NM_005625 ENSG00000137575 SDCBP MDA-9|MDA9|ST1|SYCL|TACIP18 syndecan binding protein protein-coding 119.333-3 chr1 82765390 82765871 + 0.666667 NA Intergenic Intergenic -137553 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 124.667-35 chr14 72204009 72204332 + 0.666667 NA intron (NM_001370288, intron 2 of 16) L1MB4|LINE|L1 270643 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 214-45 chr7 15471591 15472029 + 0.666667 NA intron (NM_001004320, intron 3 of 12) intron (NM_001004320, intron 3 of 12) 90205 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 167.167-56 chr7 77217011 77217478 + 0.666667 NA intron (NM_020879, intron 2 of 18) intron (NM_020879, intron 2 of 18) -17425 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 129.667-5 chr10 15048401 15048755 + 0.666667 NA intron (NM_018324, intron 2 of 8) Kanga2_a|DNA|TcMar-Tc2 4635 NM_001039702 55301 Hs.24309 NM_018324 ENSG00000152463 OLAH AURA1|SAST|TE2|THEDC1 oleoyl-ACP hydrolase protein-coding 203-47 chr8 111912135 111912566 + 0.666667 NA Intergenic MIRb|SINE|MIR 535711 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 140-7 chr10 35216502 35216888 + 0.666667 NA Intergenic Intergenic 20793 NM_182721 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 155.333-88 chr7 19155707 19156115 + 0.666667 NA Intergenic L2a|LINE|L2 -10490 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 166.5-9 chr11 34498684 34499171 + 0.666667 NA intron (NM_001422, intron 2 of 6) AluSq2|SINE|Alu 12797 NM_198381 2001 Hs.11713 NM_001422 ENSG00000135374 ELF5 ESE2 E74 like ETS transcription factor 5 protein-coding 155-42 chr2 222797388 222797756 + 0.666667 NA Intergenic Intergenic -63464 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 254.5-8 chr4 48184843 48185510 + 0.666667 NA intron (NM_003215, intron 2 of 17) intron (NM_003215, intron 2 of 17) -50926 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 142.5-15 chr11 17754667 17754930 + 0.666667 NA intron (NM_001112741, intron 1 of 3) L2a|LINE|L2 18850 NM_001112741 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 200.666-2 chr11 37687232 37687831 + 0.666667 NA Intergenic L1M5|LINE|L1 -251070 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 195.833-12 chr17 65357051 65357702 + 0.666667 NA Intergenic MADE1|DNA|TcMar-Mariner -100165 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 182.333-37 chr2 232396431 232397175 + 0.666667 NA Intergenic AluJb|SINE|Alu -9759 NR_028501 347694 Hs.452575 NR_028501 ENSG00000244280 ECEL1P2 ECEL2 endothelin converting enzyme like 1 pseudogene 2 pseudo 121-90 chr8 116930792 116931056 + 0.666667 NA Intergenic (TTAATT)n|Simple_repeat|Simple_repeat -7283 NM_001025357 441376 Hs.437551 NM_001025357 ENSG00000205002 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 164.333-44 chr3 122515104 122515486 + 0.666667 NA promoter-TSS (NM_002264) promoter-TSS (NM_002264) -356 NR_026698 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 166.667-15 chr14 59985464 59985853 + 0.666667 NA intron (NR_075071, intron 17 of 32) intron (NR_075071, intron 17 of 32) 65945 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 283.667-14 chr4 105124989 105125464 + 0.666667 NA Intergenic AluSq2|SINE|Alu -20649 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 158.333-76 chr9 31836005 31836274 + 0.666667 NA Intergenic Intergenic -454649 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 166.5-5 chr10 68819585 68819868 + 0.666667 NA Intergenic AluJb|SINE|Alu -7805 NM_001130161 219736 Hs.37636 NM_152709 ENSG00000165730 STOX1 C10orf24 storkhead box 1 protein-coding 162.333-48 chr3 39816852 39817254 + 0.666667 NA intron (NM_001284424, intron 1 of 15) Tigger18a|DNA|TcMar-Tigger 7393 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 172.5-28 chr2 16895262 16895693 + 0.666667 NA Intergenic Intergenic -229643 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 120.5-87 chr8 102983927 102984244 + 0.666667 NA Intergenic MER57A-int|LTR|ERV1 -36998 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 152.833-26 chr19 58113574 58113854 + 0.666667 NA intron (NR_027135, intron 1 of 1) AluSz|SINE|Alu 4712 NM_001145542 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 116.667-18 chr11 35195348 35195596 + 0.666667 NA intron (NM_001202556, intron 5 of 7) intron (NM_001202556, intron 5 of 7) 32522 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 161.333-78 chr9 32542614 32542977 + 0.666667 NA exon (NM_005802, exon 3 of 3) exon (NM_005802, exon 3 of 3) -8349 NM_001349118 100129250 Hs.664395 NM_001349118 ENSG00000235453 SMIM27 C9orf133|TOPORS-AS1 small integral membrane protein 27 protein-coding 119.5-44 chr18 33372535 33372795 + 0.666667 NA intron (NM_001308126, intron 5 of 23) intron (NM_001308126, intron 5 of 23) 67906 NM_001371121 190.333-47 chr5 20577637 20578083 + 0.666667 NA Intergenic Intergenic -2147 NM_001349556 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 205-30 chr3 145951614 145951994 + 0.666667 NA Intergenic Intergenic 117381 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 128.667-67 chr2 214301382 214301694 + 0.666667 NA intron (NR_047660, intron 14 of 14) L1PB4|LINE|L1 -109516 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 119.333-16 chr11 12577631 12577887 + 0.666667 NA Intergenic L1MEf|LINE|L1 -96662 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 197.5-40 chr3 161307755 161308183 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger 64114 NM_001040100 165679 Hs.369104 NM_145035 ENSG00000196542 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase small subunit B protein-coding 115.333-50 chr2 46576304 46576563 + 0.666667 NA intron (NM_012249, intron 3 of 4) intron (NM_012249, intron 3 of 4) 3805 NR_104182 100506142 Hs.658541 NR_104182 ENSG00000250116 LOC100506142 - uncharacterized LOC100506142 ncRNA 260.166-2 chr14 57771708 57772401 + 0.666667 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 92945 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 135-60 chr3 109435745 109436058 + 0.666667 NA intron (NR_109841, intron 2 of 4) intron (NR_109841, intron 2 of 4) 25911 NR_109842 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 134.667-79 chr5 12925618 12925913 + 0.666667 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 107121 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 152.333-28 chr19 28815091 28815572 + 0.666667 NA Intergenic MSTC-int|LTR|ERVL-MaLR -87637 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 176.833-31 chr7 36140298 36140685 + 0.666667 NA Intergenic L1MB8|LINE|L1 -12763 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 154.667-65 chr7 30366152 30366650 + 0.666667 NA 3' UTR (NM_147128, exon 5 of 5) 3' UTR (NM_147128, exon 5 of 5) -3649 NR_002186 222161 Hs.112423 NR_002186 DKFZP586I1420 - uncharacterized protein DKFZp586I1420 pseudo 138-11 chr10 12565965 12566238 + 0.666667 NA intron (NM_001351032, intron 4 of 11) MIR|SINE|MIR -12652 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 143.167-39 chr2 146838419 146838783 + 0.666667 NA Intergenic MIRb|SINE|MIR 251544 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 135.333-39 chr2 60239538 60239777 + 0.666667 NA Intergenic HSMAR2|DNA|TcMar-Mariner 143379 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 135.833-64 chr6 83651288 83651491 + 0.666667 NA intron (NM_001242792, intron 7 of 28) L1MCa|LINE|L1 57170 NM_001363677 9892 Hs.368046 NM_014841 ENSG00000065609 SNAP91 AP180|CALM synaptosome associated protein 91 protein-coding 148.667-89 chrX 98976361 98976888 + 0.666667 NA Intergenic L1MD2|LINE|L1 -1412089 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 156.667-80 chr7 51138946 51139388 + 0.666667 NA intron (NM_015198, intron 5 of 12) intron (NM_015198, intron 5 of 12) 177642 NM_001287438 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 125.333-100 chr6 16150151 16150377 + 0.666667 NA Intergenic Intergenic 8708 NR_039782 100616269 NR_039782 ENSG00000263712 MIR4639 - microRNA 4639 ncRNA 212.333-20 chr2 168139952 168140585 + 0.666667 NA intron (NM_013233, intron 7 of 17) intron (NM_013233, intron 7 of 17) 107327 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 229.667-28 chr5 156265142 156265631 + 0.666667 NA Intergenic Intergenic -61371 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 120-38 chr15 36749964 36750196 + 0.666667 NA intron (NM_032499, intron 11 of 11) intron (NM_032499, intron 11 of 11) 68426 NR_027320 161635 Hs.659822 NR_027320 CSNK1A1P1 CSNK1A1P casein kinase 1 alpha 1 pseudogene 1 pseudo 139.833-54 chr3 95159874 95160354 + 0.666667 NA Intergenic AluJb|SINE|Alu 221851 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 168.833-19 chr16 11472856 11473341 + 0.666667 NA TTS (NR_110907) TTS (NR_110907) 7838 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 136-74 chr6 152319774 152320132 + 0.666667 NA intron (NM_182961, intron 84 of 145) AluSz6|SINE|Alu -60577 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 136.333-47 chr2 112061098 112061403 + 0.666667 NA intron (NM_001329914, intron 2 of 18) intron (NM_001329914, intron 2 of 18) 5981 NM_032824 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 247.333-19 chr4 43459152 43459619 + 0.666667 NA intron (NR_146993, intron 1 of 2) LTR87|LTR|ERVL? 33158 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 233.5-29 chr8 123886559 123887118 + 0.666667 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 34851 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 151.167-48 chr6 46788651 46789031 + 0.666667 NA Intergenic Intergenic -4548 NM_005588 4224 Hs.179704 NM_005588 ENSG00000112818 MEP1A PPHA meprin A subunit alpha protein-coding 183.333-54 chr7 40914090 40914472 + 0.666667 NA Intergenic L1PA2|LINE|L1 65658 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 196.5-11 chr12 10669780 10670158 + 0.666667 NA intron (NM_018423, intron 1 of 10) L1MA8|LINE|L1 4083 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 260.5-9 chr17 73717626 73718220 + 0.666667 NA Intergenic Intergenic -19931 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 209.667-13 chr15 59728415 59728805 + 0.666667 NA Intergenic Intergenic -39290 NM_001368057 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 195.833-33 chr8 139001050 139001476 + 0.666667 NA Intergenic Intergenic -87222 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 131.167-57 chr4 76879993 76880267 + 0.666667 NA Intergenic MLT1F1|LTR|ERVL-MaLR 18014 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 194.833-29 chr8 129642659 129643033 + 0.666667 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 37393 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 124.333-42 chr2 29041981 29042275 + 0.666667 NA intron (NM_001321538, intron 17 of 18) MIR|SINE|MIR 32395 NM_001029883 388939 Hs.354243 NM_001029883 ENSG00000179270 PCARE C2orf71|RP54 photoreceptor cilium actin regulator protein-coding 275.167-4 chr14 65623948 65624954 + 0.666667 NA intron (NM_004480, intron 4 of 9) intron (NM_004480, intron 4 of 9) 153349 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 114.667-49 chr2 61214898 61215138 + 0.666667 NA intron (NM_014709, intron 67 of 79) intron (NM_014709, intron 67 of 79) 37600 NR_152212 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 176.833-15 chr2 69063321 69063705 + 0.666667 NA intron (NM_032208, intron 3 of 17) L1MEf|LINE|L1 -40169 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 138.167-57 chr4 135195361 135195650 + 0.666667 NA Intergenic MSTB|LTR|ERVL-MaLR -71946 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 162.333-11 chr12 4289152 4289502 + 0.666667 NA intron (NM_001759, intron 4 of 4) intron (NM_001759, intron 4 of 4) -13143 NR_125790 103752584 Hs.577711 NR_125790 ENSG00000255920 CCND2-AS1 CCND2-AS2 CCND2 antisense RNA 1 ncRNA 121.5-120 chrX 121649612 121649911 + 0.666667 NA Intergenic Intergenic 278789 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 126.833-39 chr2 207968706 207969115 + 0.666667 NA intron (NM_001080475, intron 3 of 7) intron (NM_001080475, intron 3 of 7) 56617 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 168.5-62 chr7 34531985 34532354 + 0.666667 NA intron (NR_033665, intron 2 of 3) MLT1A0|LTR|ERVL-MaLR -126049 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 117.5-60 chr5 112400434 112400805 + 0.666667 NA intron (NM_001347887, intron 1 of 23) MSTA|LTR|ERVL-MaLR 18658 NR_144931 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 171.167-26 chr2 155797032 155797432 + 0.666667 NA Intergenic L1M5|LINE|L1 457699 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 310.5-18 chr9 93330998 93331552 + 0.666667 NA 3' UTR (NM_001368813, exon 3 of 3) 3' UTR (NM_001368813, exon 3 of 3) 15028 NM_001368813 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 179.5-15 chr17 62183449 62183929 + 0.666667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 91966 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 189.5-27 chr2 51589295 51589625 + 0.666667 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 556859 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 138.333-100 chr7 78397997 78398235 + 0.666667 NA intron (NM_001301128, intron 6 of 20) intron (NM_001301128, intron 6 of 20) 50874 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 123.667-117 chr8 139929442 139929775 + 0.666667 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 170927 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 131.333-92 chr6 130165449 130165719 + 0.666667 NA intron (NM_001277185, intron 7 of 10) intron (NM_001277185, intron 7 of 10) 50301 NM_001277185 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 179.333-34 chr21 14580665 14581177 + 0.666667 NA intron (NM_001256370, intron 2 of 8) intron (NM_001256370, intron 2 of 8) -1281 NR_046512 100874190 Hs.563053 NR_046512 ENSG00000223662 SAMSN1-AS1 - SAMSN1 antisense RNA 1 ncRNA 150-3 chr10 36500141 36500543 + 0.666667 NA Intergenic Intergenic -625515 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 156.333-34 chr15 81495759 81496066 + 0.666667 NA Intergenic LTR33|LTR|ERVL -121699 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 169.333-32 chr2 36755850 36756189 + 0.666667 NA intron (NM_001177969, intron 5 of 14) AluSp|SINE|Alu 59312 NM_001328661 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 155.333-34 chr15 67259510 67259954 + 0.666667 NA intron (NM_001031715, intron 1 of 20) intron (NM_001031715, intron 1 of 20) -4534 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 257-4 chr10 82016323 82016785 + 0.666667 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 138867 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 198.667-12 chr11 56933527 56933949 + 0.666667 NA Intergenic L1P4|LINE|L1 -55176 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 152.667-48 chr20 7451300 7451659 + 0.666667 NA Intergenic Ricksha_b|DNA|MULE-MuDR 79871 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 115.667-83 chr4 63548728 63549004 + 0.666667 NA Intergenic Intergenic 860584 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 113.333-7 chr1 110027344 110027606 + 0.666667 NA Intergenic Intergenic -4102 NM_001270768 85369 Hs.584996 NM_033088 ENSG00000143093 STRIP1 FAM40A|FAR11A striatin interacting protein 1 protein-coding 142-56 chr20 55110765 55111086 + 0.666667 NA Intergenic L1M5|LINE|L1 -312118 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 153.833-63 chr8 113809034 113809449 + 0.666667 NA Intergenic Intergenic -372302 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 214.333-17 chr14 41781803 41782200 + 0.666667 NA intron (NM_001330106, intron 2 of 4) L1MCb|LINE|L1 175145 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 216.333-34 chr5 42379941 42380413 + 0.666667 NA Intergenic MIR|SINE|MIR -43262 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 142-58 chr21 21064443 21064768 + 0.666667 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) 66196 NM_001352592 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 172-37 chr2 52119590 52120052 + 0.666667 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -250827 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 139.833-56 chr3 196498451 196498682 + 0.666667 NA intron (NM_152617, intron 1 of 5) L1ME2z|LINE|L1 5202 NM_152617 165918 Hs.250648 NM_152617 ENSG00000163961 RNF168 hRNF168 ring finger protein 168 protein-coding 123.5-39 chr18 59021160 59021792 + 0.666667 NA Intergenic Intergenic -14203 NR_024021 390858 Hs.716280 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 142.667-84 chr5 140448041 140448376 + 0.666667 NA intron (NM_001197030, intron 6 of 9) MLT1J|LTR|ERVL-MaLR 46375 NM_017747 54882 Hs.594084 NM_017747 ENSG00000131503 ANKHD1 MASK|MASK1|PP2500|VBARP ankyrin repeat and KH domain containing 1 protein-coding 185.667-52 chr7 45614903 45615258 + 0.666667 NA intron (NM_001281768, intron 4 of 9) L1M4c|LINE|L1 40712 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 188.333-26 chr18 13041522 13042019 + 0.666667 NA intron (NM_032142, intron 14 of 44) AluSz|SINE|Alu 50408 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 135.667-40 chr16 69583540 69583743 + 0.666667 NA intron (NM_138714, intron 2 of 15) intron (NM_138714, intron 2 of 15) 17675 NM_001113178 10725 Hs.371987 NM_006599 ENSG00000102908 NFAT5 NF-AT5|NFATL1|NFATZ|OREBP|TONEBP nuclear factor of activated T cells 5 protein-coding 128.833-40 chr18 64688521 64688970 + 0.666667 NA Intergenic L1ME1|LINE|L1 -428690 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 182.833-35 chr3 101733715 101734141 + 0.666667 NA intron (NM_024548, intron 6 of 10) AluSp|SINE|Alu 9314 NM_001303401 79598 Hs.444135 NM_024548 ENSG00000182504 CEP97 2810403B08Rik|LRRIQ2 centrosomal protein 97 protein-coding 158-29 chr21 43855701 43856118 + 0.666667 NA Intergenic Intergenic -9314 NM_001369881 56894 Hs.248785 NM_020132 ENSG00000160216 AGPAT3 1-AGPAT 3|LPAAT-GAMMA1|LPAAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 193.5-56 chr9 26690919 26691371 + 0.666667 NA Intergenic Intergenic 201657 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 155.667-19 chr10 112721018 112721297 + 0.666667 NA intron (NM_001365713, intron 8 of 8) MIR|SINE|MIR 86987 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 192.667-3 chr1 158517160 158517649 + 0.666667 NA Intergenic Intergenic 30701 NM_001005189 391112 Hs.553780 NM_001005189 ENSG00000197532 OR6Y1 OR1-11|OR6Y2 olfactory receptor family 6 subfamily Y member 1 protein-coding 122-65 chr4 101671965 101672183 + 0.666667 NA Intergenic MER57-int|LTR|ERV1 -118533 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 118-53 chr2 76060891 76061173 + 0.666667 NA Intergenic AluSx1|SINE|Alu -350117 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 178-5 chr10 53288182 53288480 + 0.666667 NA Intergenic Intergenic -516631 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 166-9 chr10 15836301 15836656 + 0.666667 NA intron (NM_024948, intron 6 of 14) intron (NM_024948, intron 6 of 14) 24029 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 155.667-3 chr1 92336721 92336980 + 0.666667 NA intron (NM_024813, intron 10 of 12) intron (NM_024813, intron 10 of 12) 37791 NM_024813 79871 Hs.444421 NM_024813 ENSG00000122484 RPAP2 C1orf82|Rtr1 RNA polymerase II associated protein 2 protein-coding 202.333-7 chr10 88155205 88155663 + 0.666667 NA Intergenic Intergenic 291809 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 148.667-41 chr2 197647058 197647423 + 0.666667 NA intron (NM_144629, intron 1 of 8) AluJb|SINE|Alu 28347 NM_144629 130132 Hs.591615 NM_144629 ENSG00000162944 RFTN2 C2orf11|Raftlin-2 raftlin family member 2 protein-coding 144-35 chr2 114557559 114557944 + 0.666667 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 96174 NM_001321905 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 187-9 chr11 95909402 95909777 + 0.666667 NA intron (NM_016156, intron 1 of 14) intron (NM_016156, intron 1 of 14) 14518 NM_201281 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 217-11 chr2 17945621 17945988 + 0.666667 NA Intergenic L2|LINE|L2 67137 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 114.667-23 chr12 76531398 76531595 + 0.666667 NA intron (NM_001003712, intron 1 of 22) intron (NM_001003712, intron 1 of 22) 28275 NM_001319652 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 158.667-82 chr7 20519326 20519866 + 0.666667 NA Intergenic Intergenic -96071 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 157.167-22 chr14 46190506 46190881 + 0.666667 NA intron (NR_102702, intron 1 of 3) L1MA2|LINE|L1 126534 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 123.333-48 chr17 60701430 60701794 + 0.666667 NA intron (NM_001330413, intron 4 of 25) Tigger2b_Pri|DNA|TcMar-Tigger 23761 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 225-15 chr15 65077412 65077824 + 0.666667 NA exon (NM_001101362, exon 1 of 1) exon (NM_001101362, exon 1 of 1) 802 NM_001101362 390594 Hs.586890 NM_001101362 ENSG00000234438 KBTBD13 HCG1645727|NEM6 kelch repeat and BTB domain containing 13 protein-coding 220.167-25 chr5 93274155 93274706 + 0.666667 NA Intergenic Intergenic 296913 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 262.5-15 chr3 124469701 124470241 + 0.666667 NA intron (NM_001024660, intron 25 of 59) intron (NM_001024660, intron 25 of 59) 95639 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 113.833-79 chr6 134964603 134964807 + 0.666667 NA 3' UTR (NM_001363686, exon 19 of 19) 3' UTR (NM_001363686, exon 19 of 19) -14604 NM_022568 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 117.167-67 chr3 117356724 117357201 + 0.666667 NA Intergenic Intergenic 333963 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 113.167-14 chr11 37535396 37535625 + 0.666667 NA Intergenic Intergenic -403091 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 143.833-44 chr6 157143956 157144327 + 0.666667 NA intron (NM_020732, intron 8 of 19) intron (NM_020732, intron 8 of 19) 107714 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 114-26 chr11 61721966 61722176 + 0.666667 NA intron (NM_006133, intron 3 of 19) intron (NM_006133, intron 3 of 19) -30565 NM_001127392 745 Hs.473109 NM_013279 ENSG00000124920 MYRF 11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47 myelin regulatory factor protein-coding 185.333-15 chr12 111640120 111640593 + 0.666667 NA Intergenic Intergenic -40680 NR_132311 6311 Hs.76253 NM_002973 ENSG00000204842 ATXN2 ATX2|SCA2|TNRC13 ataxin 2 protein-coding 146.333-10 chr10 78329462 78329890 + 0.666667 NA Intergenic AluSz6|SINE|Alu 62334 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 197.833 chr1 35984979 35985475 + 0.666667 NA intron (NM_024852, intron 5 of 18) AluJb|SINE|Alu 54122 NM_024852 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 117.5-38 chr3 15437436 15437912 + 0.666667 NA intron (NM_033083, intron 5 of 5) intron (NM_033083, intron 5 of 5) 10076 NM_033083 85403 Hs.716733 NM_033083 ENSG00000144597 EAF1 - ELL associated factor 1 protein-coding 167-19 chr12 42701473 42701934 + 0.666667 NA intron (NR_135028, intron 2 of 3) MIR|SINE|MIR 9487 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 310.833-3 chr3 30571797 30572665 + 0.666667 NA Intergenic L1MA1|LINE|L1 -34271 NM_001024847 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 146.167-32 chr2 39041581 39041888 + 0.666667 NA intron (NM_005633, intron 6 of 22) L1MEi|LINE|L1 78729 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 191-44 chr4 42971395 42971884 + 0.666667 NA intron (NM_001080476, intron 2 of 3) MSTA|LTR|ERVL-MaLR 78373 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 158.5-45 chr2 207565319 207565601 + 0.666667 NA intron (NM_001371426, intron 4 of 8) intron (NM_001371426, intron 4 of 8) 6338 NM_001371428 127.167-44 chr2 15626480 15626739 + 0.666667 NA intron (NM_004939, intron 19 of 25) Tigger15a|DNA|TcMar-Tigger 34741 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 203.667-29 chr4 119033452 119033994 + 0.666667 NA 3' UTR (NM_001128933, exon 4 of 4) 3' UTR (NM_001128933, exon 4 of 4) -102061 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 136-8 chr10 28893260 28893597 + 0.666667 NA Intergenic MER58B|DNA|hAT-Charlie 47020 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 152.5-66 chr8 42409325 42409593 + 0.666667 NA Intergenic Intergenic 17579 NM_005662 7419 Hs.699301 NM_005662 ENSG00000078668 VDAC3 HD-VDAC3|VDAC-3 voltage dependent anion channel 3 protein-coding 182.833-10 chr11 110958360 110958981 + 0.666667 NA Intergenic L1MA7|LINE|L1 138648 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 210.666 chr11 134191805 134192396 + 0.666667 NA intron (NM_015261, intron 16 of 34) MIR3|SINE|MIR 32432 NM_015261 23310 Hs.438550 NM_015261 ENSG00000151503 NCAPD3 CAP-D3|CAPD3|MCPH22|hCAP-D3|hHCP-6|hcp-6 non-SMC condensin II complex subunit D3 protein-coding 133.667-81 chr6 84528896 84529199 + 0.666667 NA Intergenic Intergenic -54118 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 161.167-26 chr18 5453324 5453594 + 0.666667 NA intron (NM_001281535, intron 5 of 21) intron (NM_001281535, intron 5 of 21) 87097 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 149-29 chr16 63325103 63325507 + 0.666667 NA Intergenic L1M5|LINE|L1 -1288867 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 142-16 chr10 51056235 51056462 + 0.666667 NA intron (NM_001098512, intron 1 of 17) intron (NM_001098512, intron 1 of 17) 12204 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 237.333-38 chr8 89881423 89881959 + 0.666667 NA Intergenic Intergenic -20177 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 218.334-2 chr3 3264893 3265416 + 0.666667 NA Intergenic Intergenic -85437 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 147.333-63 chr4 36465792 36466112 + 0.666667 NA Intergenic Intergenic -39524 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 122.167-18 chr13 47554125 47554436 + 0.666667 NA Intergenic A-rich|Low_complexity|Low_complexity 378342 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 188.333-53 chr6 69477929 69478374 + 0.666667 NA Intergenic L1MC|LINE|L1 318315 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 157-64 chr5 15002289 15002671 + 0.666667 NA Intergenic Intergenic -130702 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 159-54 chr4 45981011 45981427 + 0.666667 NA Intergenic Intergenic 142835 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 236.5-30 chr7 21835243 21836028 + 0.666667 NA intron (NM_001277115, intron 65 of 81) L1MA5|LINE|L1 110264 NM_001127370 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 171-67 chr9 7411440 7411743 + 0.666667 NA Intergenic L1PA14|LINE|L1 388187 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 180.333-28 chr19 53022959 53023452 + 0.666667 NA Intergenic AluSz|SINE|Alu 9114 NM_152473 147664 Hs.44329 NM_152473 ENSG00000269526 ERVV-1 ENVV1|HERV-V1 endogenous retrovirus group V member 1, envelope protein-coding 124.667-112 chr6 166367653 166367966 + 0.666667 NA intron (NM_001270879, intron 1 of 4) intron (NM_001270879, intron 1 of 4) 15131 NM_016098 51660 Hs.172755 NM_016098 ENSG00000060762 MPC1 BRP44L|CGI-129|MPYCD|SLC54A1 mitochondrial pyruvate carrier 1 protein-coding 136.833-50 chr4 107831479 107831704 + 0.666667 NA intron (NM_001136258, intron 1 of 6) intron (NM_001136258, intron 1 of 6) 7026 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 204.5-32 chr5 101994766 101995353 + 0.666667 NA Intergenic Intergenic 301225 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 138-70 chr3 47213373 47213681 + 0.666667 NA intron (NR_033373, intron 2 of 6) MLT1A0|LTR|ERVL-MaLR 37082 NR_145712 109617025 NR_145712 SNORD13J - small nucleolar RNA, C/D box 13J snoRNA 168.333-3 chr10 35719625 35719939 + 0.666667 NA Intergenic (ATGAT)n|Simple_repeat|Simple_repeat -58520 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 209.667-9 chr14 53024049 53024385 + 0.666667 NA Intergenic MER34-int|LTR|ERV1 -73120 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 117.333-57 chr20 54452255 54452525 + 0.666667 NA Intergenic MER50|LTR|ERV1 -23203 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 187.667-14 chr12 128448749 128449260 + 0.666667 NA intron (NM_001136103, intron 2 of 8) AluY|SINE|Alu 154912 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 123.333-97 chr6 134985420 134985695 + 0.666667 NA intron (NM_006620, intron 11 of 17) intron (NM_006620, intron 11 of 17) -6125 NR_037435 100500880 NR_037435 ENSG00000283409 MIR3662 mir-3662 microRNA 3662 ncRNA 226.333-2 chr10 12667319 12667958 + 0.666667 NA intron (NM_001351032, intron 5 of 11) intron (NM_001351032, intron 5 of 11) -14441 NR_039701 100616320 NR_039701 ENSG00000283699 MIR4481 - microRNA 4481 ncRNA 122.667-19 chr12 40875825 40876088 + 0.666667 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) -32401 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 158.333-62 chr6 67452018 67452360 + 0.666667 NA Intergenic LTR16C|LTR|ERVL -603162 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 117-73 chr4 31114218 31114550 + 0.666667 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -56760 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 156.667-11 chr10 8639561 8640041 + 0.666667 NA Intergenic Intergenic -45410 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 167.667-54 chr22 27437705 27438136 + 0.666667 NA Intergenic Intergenic 127269 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 142.5-28 chr16 13925792 13926071 + 0.666667 NA intron (NM_005236, intron 2 of 10) intron (NM_005236, intron 2 of 10) 5774 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 202.5-22 chr5 74751601 74751979 + 0.666667 NA intron (NR_104006, intron 5 of 19) intron (NR_104006, intron 5 of 19) 15327 NM_001281302 84340 Hs.277154 NM_032380 ENSG00000164347 GFM2 EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 G elongation factor mitochondrial 2 protein-coding 216-3 chr1 226267339 226267812 + 0.666667 NA intron (NM_001366239, intron 8 of 13) intron (NM_001366239, intron 8 of 13) 41589 NM_001366245 286826 Hs.120817 NM_173083 ENSG00000183814 LIN9 BARA|BARPsv|Lin-9|TGS|TGS1|TGS2 lin-9 DREAM MuvB core complex component protein-coding 131.667-40 chr15 58291383 58291719 + 0.666667 NA Intergenic L1MC3|LINE|L1 -140440 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 180.667-29 chr16 77309005 77309443 + 0.666667 NA intron (NM_199355, intron 16 of 22) intron (NM_199355, intron 16 of 22) 109816 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 126.167-15 chr11 21175809 21176040 + 0.666667 NA intron (NM_201551, intron 13 of 18) intron (NM_201551, intron 13 of 18) 506338 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 126.667-85 chr6 149307852 149308178 + 0.666667 NA intron (NM_001292035, intron 2 of 6) L1ME4a|LINE|L1 -9697 NM_001369506 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 122.667-62 chr3 36528828 36529036 + 0.666667 NA exon (NM_003149, exon 10 of 11) exon (NM_003149, exon 10 of 11) 148445 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 138.667-63 chr4 8901426 8901722 + 0.666667 NA Intergenic LTR47A|LTR|ERVL -29735 NM_018942 3166 Hs.104134 NM_018942 ENSG00000215612 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 115.667-31 chr14 58393457 58393745 + 0.666667 NA Intergenic Intergenic -2329 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 145.833-8 chr1 219139948 219140303 + 0.666667 NA intron (NR_038845, intron 3 of 4) intron (NR_038845, intron 3 of 4) 33663 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 198-13 chr10 74601521 74601904 + 0.666667 NA intron (NM_001369124, intron 8 of 9) intron (NM_001369124, intron 8 of 9) -72388 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 124.5-71 chr7 93401588 93401854 + 0.666667 NA Intergenic MLT1C|LTR|ERVL-MaLR 81134 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 174-57 chr7 94486379 94486707 + 0.666667 NA Intergenic L2|LINE|L2 -23266 NM_022900 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 146.667-50 chr2 40258914 40259251 + 0.666667 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 171222 NM_021097 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 163.333-28 chr15 51021418 51021691 + 0.666667 NA Intergenic L1PA16|LINE|L1 -15934 NR_146310 109729174 NR_146310 ENSG00000259240 MIR4713HG - MIR4713 host gene ncRNA 150.833-23 chr2 174222818 174223142 + 0.666667 NA intron (NM_001011708, intron 3 of 9) intron (NM_001011708, intron 3 of 9) 25552 NM_001328688 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 147.667-55 chr5 27234785 27235211 + 0.666667 NA Intergenic Intergenic -196412 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 160.167-27 chr2 126385881 126386214 + 0.666667 NA Intergenic L1MD2|LINE|L1 -268062 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 198-32 chr2 181196451 181196784 + 0.666667 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 72780 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 114.5-60 chr21 32258413 32258783 + 0.666667 NA Intergenic Intergenic 20451 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 184.667-13 chr11 100086049 100086569 + 0.666667 NA intron (NM_001243270, intron 12 of 23) A-rich|Low_complexity|Low_complexity 530164 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 124.5-24 chr14 90322112 90322483 + 0.666667 NA intron (NM_017970, intron 1 of 13) intron (NM_017970, intron 1 of 13) 9644 NM_017970 55051 Hs.528131 NM_017970 ENSG00000119720 NRDE2 C14orf102 NRDE-2, necessary for RNA interference, domain containing protein-coding 144.5-6 chr1 191774974 191775224 + 0.666667 NA Intergenic AluJr4|SINE|Alu -383363 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 166-42 chr3 148224204 148224640 + 0.666667 NA Intergenic Intergenic -56469 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 262.667-23 chr4 111685788 111686322 + 0.666667 NA Intergenic MLT1J2|LTR|ERVL-MaLR -459399 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 115-19 chr11 77614082 77614415 + 0.666667 NA TTS (NM_001311200) TTS (NM_001311200) 23546 NM_001311201 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 119-99 chr8 122906335 122906514 + 0.666667 NA intron (NM_001362797, intron 3 of 4) L1ME3G|LINE|L1 119348 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 137.333-39 chr17 80690921 80691207 + 0.666667 NA intron (NM_020761, intron 3 of 33) AluJr|SINE|Alu 114568 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 124.5-10 chr11 14420076 14420310 + 0.666667 NA Intergenic Intergenic -55687 NM_001177314 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 135.167-71 chr5 12989509 12989809 + 0.666667 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 43227 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 195.333-15 chr18 914212 914620 + 0.666667 NA Intergenic Intergenic 9050 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 142.333-30 chr14 38699990 38700236 + 0.666667 NA Intergenic LTR7C|LTR|ERV1 -182483 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 148.333-63 chr3 69514653 69515039 + 0.666667 NA Intergenic L1M3|LINE|L1 -128758 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 156.333-74 chr5 37631968 37632381 + 0.666667 NA intron (NM_001345998, intron 10 of 17) Tigger3b|DNA|TcMar-Tigger 202648 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 152-10 chr1 224855806 224856194 + 0.666667 NA Intergenic LTR105_Mam|LTR|ERVL -73654 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 117-102 chr6 126633139 126633415 + 0.666667 NA Intergenic Intergenic 148646 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 149.667-29 chr17 8518463 8518838 + 0.666667 NA exon (NM_001256095, exon 20 of 42) exon (NM_001256095, exon 20 of 42) 82766 NM_001025579 81565 Hs.372123 NM_030808 ENSG00000166579 NDEL1 EOPA|MITAP1|NDE1L1|NDE2|NUDEL nudE neurodevelopment protein 1 like 1 protein-coding 183-32 chr20 25552061 25552400 + 0.666667 NA intron (NM_025176, intron 1 of 23) intron (NM_025176, intron 1 of 23) 33301 NM_025176 22981 Hs.631508 NM_025176 ENSG00000101004 NINL NLP ninein like protein-coding 232.333-33 chr7 40029764 40030183 + 0.666667 NA intron (NM_003718, intron 5 of 13) intron (NM_003718, intron 5 of 13) 79613 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 241.5-28 chr8 138283075 138284091 + 0.666667 NA intron (NM_015912, intron 3 of 19) L1MC1|LINE|L1 -200038 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 158.667-40 chr2 14257579 14257936 + 0.666667 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 143201 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 172.834 chr17 78368260 78368912 + 0.666667 NA intron (NR_110847, intron 3 of 4) intron (NR_110847, intron 3 of 4) 7584 NR_110846 101928674 Hs.637297 NR_110845 ENSG00000266970 LOC101928674 - uncharacterized LOC101928674 ncRNA 147.667-22 chr15 77685631 77685957 + 0.666667 NA intron (NM_001301194, intron 2 of 3) AluJr|SINE|Alu 10354 NM_001301200 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 288.5-5 chr3 192211986 192212471 + 0.666667 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) -26402 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 147.5-68 chr4 79134735 79135019 + 0.666667 NA intron (NR_038342, intron 3 of 5) L1PA14|LINE|L1 163129 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 159-33 chr18 47841621 47841978 + 0.666667 NA 3' UTR (NM_005901, exon 11 of 11) 3' UTR (NM_005901, exon 11 of 11) 88860 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 134.667-96 chr7 4889479 4889803 + 0.666667 NA Intergenic AluJb|SINE|Alu -5925 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 141.667-22 chr13 93338152 93338477 + 0.666667 NA intron (NM_005708, intron 1 of 8) intron (NM_005708, intron 1 of 8) 111507 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 290.167-12 chr6 118258252 118259001 + 0.666667 NA intron (NM_001029858, intron 3 of 7) L1M5|LINE|L1 172723 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 148.667-69 chr6 142575992 142576391 + 0.666667 NA intron (NR_027312, intron 1 of 2) MER41-int|LTR|ERV1 61645 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 128.333-70 chr2 178638808 178639131 + 0.666667 NA intron (NM_001256850, intron 173 of 312) intron (NM_001256850, intron 173 of 312) 115778 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 167.167-43 chr4 52287464 52287877 + 0.666667 NA Intergenic L1ME4a|LINE|L1 236366 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 124.333-66 chr3 97433780 97434019 + 0.666667 NA intron (NM_001080448, intron 6 of 17) intron (NM_001080448, intron 6 of 17) -5708 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 162-14 chr11 30184819 30185320 + 0.666667 NA Intergenic Intergenic -45945 NM_000510 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 167.667-31 chr16 49607313 49607677 + 0.666667 NA intron (NM_001271620, intron 5 of 7) intron (NM_001271620, intron 5 of 7) 56829 NM_001330533 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 221-4 chr10 89043556 89044020 + 0.666667 NA Intergenic L1PA16|LINE|L1 -19548 NR_039826 100616128 NR_039826 ENSG00000283664 MIR4679-1 - microRNA 4679-1 ncRNA 145.333-64 chr5 111378936 111379483 + 0.666667 NA intron (NM_001744, intron 4 of 10) intron (NM_001744, intron 4 of 10) -133017 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 144.333-44 chr2 43035476 43035836 + 0.666667 NA intron (NR_110585, intron 2 of 5) L1ME4a|LINE|L1 3887 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 114.167-17 chr11 94411467 94411735 + 0.666667 NA Intergenic L1M5|LINE|L1 -10182 NM_016540 10888 Hs.272385 NM_016540 ENSG00000123901 GPR83 GIR|GPR72 G protein-coupled receptor 83 protein-coding 134.333-100 chr8 57602682 57603080 + 0.666667 NA Intergenic Intergenic -143268 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 137.167-5 chr1 241801204 241801540 + 0.666667 NA 3' UTR (NM_001367482, exon 28 of 28) 3' UTR (NM_001367482, exon 28 of 28) -46819 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 159.333-51 chr3 169098890 169099171 + 0.666667 NA intron (NM_001163999, intron 10 of 14) L1MC4a|LINE|L1 46493 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 199.667-3 chr1 117926992 117927549 + 0.666667 NA intron (NM_001135589, intron 1 of 12) intron (NM_001135589, intron 1 of 12) 2351 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 160.333-14 chr14 62549645 62550057 + 0.666667 NA Intergenic L1PA13|LINE|L1 -409878 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 127-15 chr11 57357336 57357657 + 0.666667 NA intron (NM_002559, intron 8 of 11) MIRc|SINE|MIR 19144 NM_002559 5024 Hs.146738 NM_002559 ENSG00000109991 P2RX3 P2X3 purinergic receptor P2X 3 protein-coding 119.333-86 chr5 125668238 125668542 + 0.666667 NA Intergenic Intergenic 175129 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 164.667-5 chr1 110577799 110578177 + 0.666667 NA Intergenic L1ME1|LINE|L1 28370 NM_004974 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 118.833-11 chr11 28819967 28820241 + 0.666667 NA Intergenic Intergenic -342556 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 127.333-47 chr2 52383429 52383687 + 0.666667 NA intron (NR_135239, intron 2 of 2) GA-rich|Low_complexity|Low_complexity 12910 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 120-85 chr4 183055236 183055445 + 0.666667 NA Intergenic L1MA4|LINE|L1 17675 NR_003612 403315 Hs.652187 NR_003612 ENSG00000230219 FAM92A1P2 FAM92A3 family with sequence similarity 92, member A3 pseudo 224-10 chr12 77421487 77421998 + 0.666667 NA Intergenic Intergenic -356173 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 114.5-12 chr10 67936703 67937176 + 0.666667 NA intron (NM_001278185, intron 20 of 23) L2c|LINE|L2 45537 NM_001314049 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 146.333-5 chr1 189880085 189880517 + 0.666667 NA Intergenic Tigger7|DNA|TcMar-Tigger 595709 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 134-63 chr2 139984207 139984525 + 0.666667 NA Intergenic L1PA15|LINE|L1 602319 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 118.667-30 chr14 28888065 28888443 + 0.666667 NA Intergenic AluJb|SINE|Alu -102467 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 179.167-31 chr3 96291374 96291950 + 0.666667 NA Intergenic Intergenic -68302 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 150.667-55 chr2 215778518 215778790 + 0.666667 NA intron (NR_037195, intron 1 of 9) LTR16C|LTR|ERVL 60611 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 115-51 chr3 49558417 49558702 + 0.666667 NA intron (NM_003458, intron 1 of 11) intron (NM_003458, intron 1 of 11) 4082 NM_003458 8927 Hs.194684 NM_003458 ENSG00000164061 BSN ZNF231 bassoon presynaptic cytomatrix protein protein-coding 223.333-23 chr21 28643790 28644173 + 0.666667 NA Intergenic MLT1J2|LTR|ERVL-MaLR 104663 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 154-25 chr15 27618017 27618463 + 0.666667 NA Intergenic L1MC3|LINE|L1 -456921 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 198.834-14 chr9 68851476 68852011 + 0.666667 NA intron (NM_003558, intron 4 of 15) intron (NM_003558, intron 4 of 15) 71678 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 212.667-50 chr8 139565326 139565930 + 0.666667 NA Intergenic MLT2B4|LTR|ERVL 137495 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 181.667-18 chr16 85749800 85750239 + 0.666667 NA intron (NR_161454, intron 1 of 3) intron (NR_161454, intron 1 of 3) 1077 NR_161452 404550 Hs.461655 NM_206967 ENSG00000154102 C16orf74 - chromosome 16 open reading frame 74 protein-coding 113.333-67 chr22 34760009 34760231 + 0.666667 NA intron (NR_138042, intron 4 of 4) intron (NR_138042, intron 4 of 4) 237796 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 137.833-38 chr5 80563663 80564211 + 0.666667 NA intron (NM_001004441, intron 3 of 4) intron (NM_001004441, intron 3 of 4) 6343 NM_001004441 340120 Hs.519404 NM_001004441 ENSG00000189127 ANKRD34B DP58 ankyrin repeat domain 34B protein-coding 160.334-4 chr2 18779568 18780094 + 0.666667 NA Intergenic AluYc|SINE|Alu -190251 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 135.833-18 chr14 86923138 86923522 + 0.666667 NA TTS (NR_038445) TTS (NR_038445) 17552 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 148.333-35 chr15 71912422 71912865 + 0.666667 NA intron (NM_006901, intron 19 of 41) L1ME3A|LINE|L1 102089 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 152-16 chr11 70891903 70892373 + 0.666667 NA intron (NM_012309, intron 10 of 24) intron (NM_012309, intron 10 of 24) -19770 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 136-19 chr12 28649006 28649250 + 0.666667 NA Intergenic L1MCa|LINE|L1 -458390 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 175-14 chr11 22474157 22474550 + 0.666667 NA intron (NR_120583, intron 2 of 3) intron (NR_120583, intron 2 of 3) 17666 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 113.667-22 chr11 63369231 63369450 + 0.666667 NA promoter-TSS (NM_080866) promoter-TSS (NM_080866) -445 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 179.167-41 chr6 55833981 55834324 + 0.666667 NA intron (NM_001329754, intron 1 of 5) intron (NM_001329754, intron 1 of 5) 41438 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 234.833-23 chr7 116599748 116600324 + 0.666667 NA intron (NR_120506, intron 2 of 4) intron (NR_120506, intron 2 of 4) 14784 NR_120506 100996266 Hs.552122 NR_120506 LINC01510 - long intergenic non-protein coding RNA 1510 ncRNA 140.5-70 chr7 3961012 3961258 + 0.666667 NA intron (NM_152744, intron 8 of 44) intron (NM_152744, intron 8 of 44) -168550 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 138.833-64 chr4 140389590 140389932 + 0.666667 NA intron (NM_001130675, intron 15 of 15) intron (NM_001130675, intron 15 of 15) 16251 NM_001153484 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 215.333-4 chr10 64900881 64901431 + 0.666667 NA TTS (NR_134456) TTS (NR_134456) 23362 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 127-99 chr9 28383668 28383959 + 0.666667 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 335492 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 177.833-30 chr4 100310779 100311297 + 0.666667 NA Intergenic MER45A|DNA|hAT-Tip100 84209 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 159.5-50 chr8 137445946 137446219 + 0.666667 NA Intergenic Intergenic -32494 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 126-76 chr5 84138724 84138952 + 0.666667 NA intron (NM_001278642, intron 3 of 9) intron (NM_001278642, intron 3 of 9) 246029 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 137.167-37 chr2 169830027 169830315 + 0.666667 NA intron (NM_172070, intron 1 of 38) intron (NM_172070, intron 1 of 38) 2663 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 158-14 chr12 44460435 44460780 + 0.666667 NA Intergenic Intergenic 415054 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 181.834-5 chr5 25181991 25182784 + 0.666667 NA intron (NR_147006, intron 1 of 4) intron (NR_147006, intron 1 of 4) 8269 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 137-4 chr1 175324846 175325164 + 0.666667 NA intron (NM_003285, intron 21 of 22) L3|LINE|CR1 -132018 NM_001319230 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 210.833-24 chr5 132816416 132816889 + 0.666667 NA 3' UTR (NM_175873, exon 1 of 1) 3' UTR (NM_175873, exon 1 of 1) 3350 NM_175873 134548 Hs.13308 NM_175873 ENSG00000198944 SOWAHA ANKRD43 sosondowah ankyrin repeat domain family member A protein-coding 158-4 chr1 107027453 107027975 + 0.666667 NA Intergenic Intergenic -28960 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 145.333-72 chr6 66199073 66199447 + 0.666667 NA Intergenic Intergenic 411381 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 164.167-39 chr2 204511887 204512307 + 0.666667 NA Intergenic L1ME3Cz|LINE|L1 -33378 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 144.167-34 chr2 9493974 9494239 + 0.666667 NA intron (NM_003183, intron 15 of 18) intron (NM_003183, intron 15 of 18) 19051 NM_001320858 285148 Hs.667226 NM_001039613 ENSG00000134330 IAH1 - isoamyl acetate hydrolyzing esterase 1 (putative) protein-coding 137-33 chr14 56928567 56928833 + 0.666667 NA intron (NR_029385, intron 3 of 3) intron (NR_029385, intron 3 of 3) 115542 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 124.167-79 chr6 71519504 71519722 + 0.666667 NA Intergenic Intergenic 98586 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 114.333-11 chr1 238021976 238022226 + 0.666667 NA Intergenic Intergenic -131179 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 113.5-6 chr1 185012250 185012514 + 0.666667 NA Intergenic (CAACTGT)n|Simple_repeat|Simple_repeat 10855 NR_146489 101929069 Hs.497170 NR_146489 ENSG00000260976 LINC01633 GS1-120K12.4 long intergenic non-protein coding RNA 1633 ncRNA 138-6 chr1 174344645 174345046 + 0.666667 NA intron (NM_001366445, intron 11 of 13) L1M1|LINE|L1 69745 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 221.667-12 chr18 42055590 42056141 + 0.666667 NA intron (NM_001308020, intron 20 of 23) intron (NM_001308020, intron 20 of 23) 100631 NM_002647 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 116.5-19 chr14 51431861 51432272 + 0.666667 NA Intergenic Intergenic -34931 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 154.167-43 chr3 74512601 74513000 + 0.666667 NA intron (NM_020872, intron 1 of 21) intron (NM_020872, intron 1 of 21) 8340 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 151-79 chr8 125219332 125219592 + 0.666667 NA intron (NM_001349486, intron 5 of 7) (CTG)n|Simple_repeat|Simple_repeat 127602 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 185-46 chr6 122373410 122373890 + 0.666667 NA Intergenic L2c|LINE|L2 -25901 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 165.167-38 chr4 89989557 89990009 + 0.666667 NA Intergenic Intergenic 94929 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 183-7 chr12 86249008 86249374 + 0.666667 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) 7200 NM_001351282 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 138-64 chr20 50481981 50482411 + 0.666667 NA Intergenic Intergenic -28125 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 176.5-28 chr18 4953323 4953747 + 0.666667 NA Intergenic L1PBa|LINE|L1 -127647 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 220-9 chr14 57686812 57687311 + 0.666667 NA intron (NM_001352014, intron 1 of 9) MLT1B|LTR|ERVL-MaLR 177938 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 127-82 chr5 93675804 93676104 + 0.666667 NA intron (NM_032042, intron 10 of 10) intron (NM_032042, intron 10 of 10) -55166 NR_031754 100313887 NR_031754 ENSG00000284336 MIR2277 mir-2277 microRNA 2277 ncRNA 129.667-13 chr11 55615973 55616356 + 0.666667 NA Intergenic MIR3|SINE|MIR -11766 NM_001004700 219429 Hs.553620 NM_001004700 ENSG00000172188 OR4C11 OR11-136|OR4C11P olfactory receptor family 4 subfamily C member 11 protein-coding 205.833-34 chr8 133276345 133276819 + 0.666667 NA intron (NM_001258432, intron 1 of 13) THE1B|LTR|ERVL-MaLR 20670 NM_001258432 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 130.667-51 chr3 94575303 94575643 + 0.666667 NA Intergenic Intergenic -362790 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 151.167-9 chr11 14675737 14675964 + 0.666667 NA intron (NM_000922, intron 1 of 15) L1ME2|LINE|L1 32046 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 127.5-44 chr3 76176958 76177181 + 0.666667 NA Intergenic Intergenic -391520 NM_001290210 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 128-62 chr3 37183629 37183860 + 0.666667 NA Intergenic Intergenic -7384 NM_001348300 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 131.167-56 chr3 184368686 184368923 + 0.666667 NA TTS (NM_001278699) TTS (NM_001278699) 5443 NM_001278698 5437 Hs.432574 NM_006232 ENSG00000163882 POLR2H RPABC3|RPB17|RPB8 RNA polymerase II subunit H protein-coding 191.167-37 chr8 122536020 122536582 + 0.666667 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 32343 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 239.5-14 chr21 14730697 14731335 + 0.666667 NA Intergenic AluSx|SINE|Alu -87909 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 127.667-15 chr11 37291066 37291403 + 0.666667 NA Intergenic Intergenic -647367 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 212.333-26 chr3 187710045 187710640 + 0.666667 NA intron (NR_034062, intron 1 of 2) MLT2B1|LTR|ERVL -7785 NM_001004312 344892 Hs.567872 NM_001004312 ENSG00000198471 RTP2 Z3CXXC2 receptor transporter protein 2 protein-coding 151.167-13 chr12 3416708 3417252 + 0.666667 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) 35631 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 113.667-94 chr4 119866165 119866597 + 0.666667 NA Intergenic MIR|SINE|MIR -61866 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 123.667-14 chr10 76624467 76624711 + 0.666667 NA Intergenic Intergenic -263455 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 151.667-5 chr1 235789553 235789866 + 0.666667 NA intron (NM_000081, intron 12 of 52) intron (NM_000081, intron 12 of 52) 63351 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 150.333-49 chr18 32901484 32901837 + 0.666667 NA Intergenic Intergenic -128637 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 221.167-15 chr2 31429615 31429987 + 0.666667 NA Intergenic Intergenic -15059 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 138.333-97 chr7 25996268 25996673 + 0.666667 NA Intergenic Intergenic -46484 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 121.167-45 chr2 164473733 164474044 + 0.666667 NA Intergenic Intergenic 94607 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 113.667 chr1 82735034 82735342 + 0.666667 NA Intergenic AluJb|SINE|Alu -167995 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 143.167-26 chr17 64152682 64152904 + 0.666667 NA intron (NM_018469, intron 10 of 11) intron (NM_018469, intron 10 of 11) 6454 NR_002995 677842 Hs.405444 NR_002995 ENSG00000277887 SNORA50C ACA62|SNORA76|SNORA76C small nucleolar RNA, H/ACA box 50C snoRNA 187.667-15 chr13 62808708 62809234 + 0.666667 NA Intergenic Intergenic -1612 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 127.5-20 chr12 51398153 51398608 + 0.666667 NA intron (NM_001258401, intron 1 of 24) intron (NM_001258401, intron 1 of 24) -6974 NM_007210 11226 Hs.505575 NM_007210 ENSG00000139629 GALNT6 GALNAC-T6|GalNAcT6 polypeptide N-acetylgalactosaminyltransferase 6 protein-coding 173.333-63 chr7 10552784 10553119 + 0.666667 NA intron (NR_147499, intron 2 of 2) intron (NR_147499, intron 2 of 2) -149725 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 121.667-14 chr10 104176233 104176535 + 0.666667 NA intron (NM_025145, intron 19 of 37) intron (NM_025145, intron 19 of 37) 42499 NR_030340 693194 NR_030340 ENSG00000208033 MIR609 MIRN609|hsa-mir-609 microRNA 609 ncRNA 127.333-101 chr6 164070695 164070999 + 0.666667 NA Intergenic Intergenic -399363 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 216.333-14 chr15 38128256 38128768 + 0.666667 NA Intergenic Intergenic -55522 NR_147199 107984773 Hs.285193 NR_147199 ENSG00000236914 LINC01852 - long intergenic non-protein coding RNA 1852 ncRNA 119.167-58 chr21 28698841 28699212 + 0.666667 NA Intergenic Intergenic 159708 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 128-84 chr7 33171835 33172192 + 0.666667 NA intron (NM_198428, intron 4 of 22) MER57A-int|LTR|ERV1 42449 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 202.833-33 chrX 108150501 108150882 + 0.666667 NA intron (NM_001321287, intron 11 of 13) THE1B|LTR|ERVL-MaLR 58913 NM_052936 115201 Hs.8763 NM_052936 ENSG00000101844 ATG4A APG4A|AUTL2 autophagy related 4A cysteine peptidase protein-coding 150.333-66 chr3 34542328 34542685 + 0.666667 NA Intergenic Intergenic 743876 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 141.5-64 chr4 23885522 23885879 + 0.666667 NA intron (NM_001330752, intron 2 of 13) intron (NM_001330752, intron 2 of 13) 4347 NR_148984 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 144-53 chr4 57646032 57646349 + 0.666667 NA Intergenic Intergenic 220318 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 139.833-23 chr14 48874333 48874680 + 0.666667 NA Intergenic Intergenic 711874 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 176.833-30 chr6 55138976 55139439 + 0.666667 NA intron (NM_001526, intron 1 of 7) L2|LINE|L2 32747 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 221-10 chr14 24967721 24968174 + 0.666667 NA intron (NM_001351943, intron 3 of 6) MIRb|SINE|MIR 81053 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 177.833 chr10 82933664 82934130 + 0.666667 NA intron (NR_163253, intron 6 of 10) MER74A|LTR|ERVL -700977 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 159.833-52 chr8 122964405 122964998 + 0.666667 NA intron (NM_001362797, intron 4 of 4) L1PB1|LINE|L1 61071 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 159-63 chr6 153165733 153166084 + 0.666667 NA Intergenic Intergenic -34626 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 274.333-2 chr10 30191178 30191677 + 0.666667 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat -20425 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 158-49 chr7 44131369 44131725 + 0.666667 NA Intergenic MLT1J|LTR|ERVL-MaLR -7977 NM_006230 5425 Hs.306791 NM_006230 ENSG00000106628 POLD2 - DNA polymerase delta 2, accessory subunit protein-coding 119.333-44 chr2 10543928 10544253 + 0.666667 NA Intergenic MLT1H1|LTR|ERVL-MaLR 94362 NR_110597 101929715 Hs.634550 NR_110597 ODC1-DT lncRNA-MIF ODC1 divergent transcript ncRNA 128.333-29 chr13 26415330 26415534 + 0.666667 NA Intergenic L1M4c|LINE|L1 -142251 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 115.833-18 chr13 97538185 97538575 + 0.666667 NA Intergenic L2c|LINE|L2 104211 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 170.333-46 chr22 47462565 47462948 + 0.666667 NA intron (NR_109967, intron 2 of 2) intron (NR_109967, intron 2 of 2) 24355 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 197.667-2 chr1 19128857 19129480 + 0.666667 NA intron (NM_020765, intron 60 of 105) intron (NM_020765, intron 60 of 105) 81098 NM_020765 23352 Hs.148078 NM_020765 ENSG00000127481 UBR4 RBAF600|ZUBR1|p600 ubiquitin protein ligase E3 component n-recognin 4 protein-coding 122.667-25 chr14 56886194 56886459 + 0.666667 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 73168 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 285.334-5 chr20 48918077 48918951 + 0.666667 NA Intergenic MER20B|DNA|hAT-Charlie -3197 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 158.667-70 chr5 37155928 37156208 + 0.666667 NA intron (NM_023073, intron 40 of 51) intron (NM_023073, intron 40 of 51) -92978 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 152.667-68 chr5 58544646 58544982 + 0.666667 NA intron (NR_109904, intron 3 of 3) intron (NR_109904, intron 3 of 3) 13429 NR_109904 101928600 Hs.694699 NR_109904 ENSG00000250127 LINC02108 - long intergenic non-protein coding RNA 2108 ncRNA 181.333-50 chr6 36704621 36705033 + 0.666667 NA intron (NM_001257357, intron 2 of 13) intron (NM_001257357, intron 2 of 13) 7001 NM_001257357 401258 Hs.485258 NM_207498 ENSG00000255587 RAB44 RASD3|RASL13|dJ431A14.3 RAB44, member RAS oncogene family protein-coding 135.667-83 chr5 19110418 19110724 + 0.666667 NA Intergenic L1MA5|LINE|L1 775701 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 161-62 chr6 63012774 63013233 + 0.666667 NA Intergenic Intergenic 306974 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 121.667-15 chr11 79205633 79205842 + 0.666667 NA intron (NM_001098816, intron 3 of 33) L1MD2|LINE|L1 196372 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 243.5-5 chr12 55105021 55105572 + 0.666667 NA Intergenic Intergenic -24473 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 120-69 chr21 30697672 30698121 + 0.666667 NA Intergenic Intergenic 20881 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 197-28 chr20 14102940 14103516 + 0.666667 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 107712 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 146.667-62 chr3 54587241 54587691 + 0.666667 NA intron (NM_018398, intron 9 of 37) AluSx|SINE|Alu 52391 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 173.333-64 chr7 18486258 18486713 + 0.666667 NA intron (NM_001204144, intron 3 of 12) intron (NM_001204144, intron 3 of 12) -9225 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 138.667-33 chr15 57897487 57897870 + 0.666667 NA Intergenic Intergenic 116345 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 157.833-66 chr8 22814789 22815141 + 0.666667 NA intron (NM_001363233, intron 4 of 6) intron (NM_001363233, intron 4 of 6) -63007 NR_125433 101929237 Hs.677838 NR_125433 ENSG00000248738 LOC101929237 - uncharacterized LOC101929237 ncRNA 182-46 chr6 41008044 41008532 + 0.666667 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 14992 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 163.5-56 chr5 12195512 12195818 + 0.666667 NA Intergenic Intergenic -291219 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 166.5-19 chr15 58275701 58276133 + 0.666667 NA Intergenic MLT1J|LTR|ERVL-MaLR 137536 NM_001320635 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 119.333-61 chr21 20610630 20610895 + 0.666667 NA Intergenic L1MA1|LINE|L1 192346 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 144.667-79 chr5 61254606 61255017 + 0.666667 NA intron (NR_146624, intron 1 of 2) intron (NR_146624, intron 1 of 2) 10118 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 122.667-81 chr4 171865120 171865481 + 0.666667 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -51693 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 143.333-19 chr14 42539850 42540093 + 0.666667 NA Intergenic Intergenic 933115 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 163-61 chr8 76326959 76327367 + 0.666667 NA Intergenic L1M5|LINE|L1 -79491 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 203-4 chr11 32631427 32631897 + 0.666667 NA intron (NM_001008391, intron 14 of 17) (AGGAA)n|Simple_repeat|Simple_repeat 47831 NM_001307929 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 140.833-8 chr10 90275497 90275750 + 0.666667 NA Intergenic Intergenic 265182 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 113.833-30 chr18 1057652 1057912 + 0.666667 NA Intergenic L1MA9|LINE|L1 -129789 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 157.667-50 chr4 32046191 32046527 + 0.666667 NA intron (NR_125936, intron 1 of 2) L1PA13|LINE|L1 -23937 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 167.333-50 chr4 63542183 63542617 + 0.666667 NA Intergenic L1PA15-16|LINE|L1 867050 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 162-61 chr6 52690642 52691064 + 0.666667 NA Intergenic Intergenic 19740 NM_014051 28978 Hs.94896 NM_014051 ENSG00000096092 TMEM14A C6orf73|PTD011 transmembrane protein 14A protein-coding 213-9 chr13 99446829 99447442 + 0.666667 NA Intergenic AluJo|SINE|Alu 52171 NR_110731 102725509 Hs.648968 NR_110731 LINC01232 TCONS_00021520 long intergenic non-protein coding RNA 1232 ncRNA 169.667-69 chr7 99840171 99840515 + 0.666667 NA intron (NM_001278921, intron 4 of 9) MER4CL34|LTR|ERV1 12330 NM_057096 64816 Hs.306220 NM_022820 ENSG00000021461 CYP3A43 - cytochrome P450 family 3 subfamily A member 43 protein-coding 302-20 chr3 73390067 73390555 + 0.666667 NA intron (NM_001303139, intron 4 of 7) intron (NM_001303139, intron 4 of 7) 43684 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 185.667-45 chr6 18925157 18925554 + 0.666667 NA Intergenic L1MA3|LINE|L1 255125 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 233.167-32 chr8 114779357 114779775 + 0.666667 NA Intergenic AluJo|SINE|Alu 888447 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 114.333-6 chr1 109996340 109996643 + 0.666667 NA intron (NM_001242673, intron 1 of 16) intron (NM_001242673, intron 1 of 16) -4436 NM_001242674 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 238-4 chr10 5316852 5317448 + 0.666667 NA Intergenic L1ME3Cz|LINE|L1 -45914 NR_149060 110806285 NR_149060 ENSG00000224034 LINC02561 - long intergenic non-protein coding RNA 2561 ncRNA 199-14 chr2 191478983 191479357 + 0.666667 NA Intergenic Intergenic -198902 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 174-41 chr3 193076083 193076484 + 0.666667 NA Intergenic L1MEg|LINE|L1 -158427 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 113.833-48 chr2 222730218 222730447 + 0.666667 NA Intergenic Intergenic 58674 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 118.833-32 chr18 3842885 3843297 + 0.666667 NA intron (NM_001242761, intron 4 of 11) intron (NM_001242761, intron 4 of 11) 2267 NM_001242765 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 134.167-22 chr13 59875926 59876203 + 0.666667 NA intron (NM_001258369, intron 21 of 26) intron (NM_001258369, intron 21 of 26) -136654 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 205.167-24 chr2 36837588 36838310 + 0.666667 NA 3' UTR (NM_003162, exon 18 of 18) 3' UTR (NM_003162, exon 18 of 18) 128587 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 166-24 chr14 63127255 63127567 + 0.666667 NA Intergenic Intergenic -77032 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 137.167-56 chr6 34737079 34737653 + 0.666667 NA Intergenic AluSx1|SINE|Alu -19728 NR_029472 6631 Hs.1063 NM_003093 ENSG00000124562 SNRPC U1C|Yhc1 small nuclear ribonucleoprotein polypeptide C protein-coding 131-36 chr20 62255110 62255429 + 0.666667 NA intron (NM_001363878, intron 1 of 14) AluSx1|SINE|Alu 16748 NM_144498 9885 Hs.473254 NM_014835 ENSG00000130703 OSBPL2 DFNA67|DNFA67|ORP-2|ORP2 oxysterol binding protein like 2 protein-coding 121.667-40 chr17 73156130 73156426 + 0.666667 NA Intergenic Intergenic -8732 NM_001050 6752 Hs.514451 NM_001050 ENSG00000180616 SSTR2 - somatostatin receptor 2 protein-coding 144.333-9 chr1 184405396 184405880 + 0.666667 NA intron (NM_030806, intron 1 of 5) intron (NM_030806, intron 1 of 5) 18609 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 224.667-26 chr4 101597101 101597528 + 0.666667 NA Intergenic MER63A|DNA|hAT-Blackjack -193293 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 144.167-58 chr5 67131366 67131712 + 0.666667 NA intron (NM_001297651, intron 12 of 25) intron (NM_001297651, intron 12 of 25) 65260 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 194.833-8 chr14 69605320 69605706 + 0.666667 NA Intergenic MIRb|SINE|MIR -6083 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 173.667-53 chr5 45677567 45677969 + 0.666667 NA intron (NM_021072, intron 1 of 7) intron (NM_021072, intron 1 of 7) 18612 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 151-74 chr7 137923226 137923560 + 0.666667 NA intron (NM_001318246, intron 2 of 11) intron (NM_001318246, intron 2 of 11) 9595 NM_001318246 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 118.333-94 chr5 96172630 96172970 + 0.666667 NA intron (NR_130776, intron 1 of 4) MLT1N2|LTR|ERVL-MaLR 93662 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 128.333-106 chr6 66907982 66908273 + 0.666667 NA Intergenic L1M2|LINE|L1 1120248 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 203-41 chr7 3853846 3854306 + 0.666667 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -275609 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 183.333-68 chrX 155029337 155029808 + 0.666667 NA intron (NM_023934, intron 1 of 4) AluSp|SINE|Alu 2728 NM_023934 65991 Hs.356050 NM_023934 ENSG00000165775 FUNDC2 DC44|HCBP6|HCC3|PD03104 FUN14 domain containing 2 protein-coding 143.5-77 chr7 30623455 30623724 + 0.666667 NA intron (NM_002047, intron 12 of 16) L1MEf|LINE|L1 28711 NM_002047 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 120-66 chr20 42269491 42269792 + 0.666667 NA intron (NM_007050, intron 13 of 30) intron (NM_007050, intron 13 of 30) -415842 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 179.333-13 chr12 60576911 60577288 + 0.666667 NA Intergenic MER67C|LTR|ERV1 887729 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 165.667-31 chr19 34490852 34491621 + 0.666667 NA intron (NM_001080436, intron 2 of 7) intron (NM_001080436, intron 2 of 7) 9478 NM_001080436 126374 Hs.585010 NM_001080436 ENSG00000142279 WTIP - WT1 interacting protein protein-coding 135.833-65 chr7 14240098 14240447 + 0.666667 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -248847 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 145-79 chr7 28407600 28408024 + 0.666667 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) -4706 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 120.5-24 chr12 8669354 8669641 + 0.666667 NA Intergenic Intergenic -6671 NR_123733 8076 Hs.512842 NM_003480 ENSG00000197614 MFAP5 AAT9|MAGP-2|MAGP2|MFAP-5|MP25 microfibril associated protein 5 protein-coding 204.834-11 chr7 40726895 40727651 + 0.666667 NA intron (NM_024728, intron 13 of 14) intron (NM_024728, intron 13 of 14) 252666 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 247.5-3 chr1 111087550 111088211 + 0.666667 NA Intergenic L1M1|LINE|L1 -51503 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 212.167-28 chr9 107928029 107928378 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR -438434 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 115.167-16 chr10 63261573 63261792 + 0.666667 NA intron (NM_001322252, intron 2 of 24) LFSINE_Vert|SINE|tRNA 7541 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 150.167-46 chr4 43509384 43509666 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR -16982 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 171.833-15 chr14 52207545 52208053 + 0.666667 NA Intergenic MIR|SINE|MIR -59899 NM_000953 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 157.667-64 chr6 60329399 60329662 + 0.666667 NA Intergenic Intergenic -1244600 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 123.833-65 chr8 21211953 21212237 + 0.666667 NA Intergenic Intergenic -86144 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 118.333-37 chr15 50351204 50351503 + 0.666667 NA non-coding (NR_026891, exon 1 of 1) non-coding (NR_026891, exon 1 of 1) -2821 NR_024490 100129387 Hs.659360 NR_024490 GABPB1-AS1 - GABPB1 antisense RNA 1 ncRNA 199.667-36 chr20 44315199 44315598 + 0.666667 NA Intergenic AluJo|SINE|Alu -4196 NM_001080472 128486 Hs.632269 NM_001080472 ENSG00000197296 FITM2 C20orf142|Fit2|dJ881L22.2 fat storage inducing transmembrane protein 2 protein-coding 136.5-25 chr12 66053412 66053891 + 0.666667 NA Intergenic Intergenic -22585 NR_146530 105369810 NR_146530 ENSG00000256259 LINC02425 - long intergenic non-protein coding RNA 2425 ncRNA 171.667-12 chr11 77716268 77716691 + 0.666667 NA intron (NM_016578, intron 5 of 15) L1MA8|LINE|L1 -78673 NM_001311199 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 173-58 chr8 124523718 124524061 + 0.666667 NA intron (NM_001317889, intron 1 of 12) intron (NM_001317889, intron 1 of 12) 15196 NM_032026 83940 Hs.170568 NM_032026 ENSG00000147687 TATDN1 CDA11 TatD DNase domain containing 1 protein-coding 153.5-16 chr12 19119441 19119702 + 0.666667 NA Intergenic Intergenic -10162 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 122.5-83 chr6 73063270 73063638 + 0.666667 NA intron (NM_001160132, intron 3 of 13) intron (NM_001160132, intron 3 of 13) 80060 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 251.167-3 chr10 28463365 28463950 + 0.666667 NA intron (NR_134496, intron 1 of 2) L2|LINE|L2 32156 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 156.667-6 chr1 114623689 114624039 + 0.666667 NA intron (NM_001256404, intron 4 of 20) AluSx|SINE|Alu -42249 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 156 chr1 7166031 7166409 + 0.666667 NA intron (NM_001349608, intron 3 of 21) AluY|SINE|Alu 223534 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 208.833-32 chr7 96079206 96079661 + 0.666667 NA intron (NM_004411, intron 15 of 16) intron (NM_004411, intron 15 of 16) 140323 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 161.333-45 chr21 24120545 24121027 + 0.666667 NA Intergenic Intergenic 200591 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 129.333-40 chr17 40684876 40685199 + 0.666667 NA Intergenic Intergenic 18715 NM_019016 192666 Hs.87383 NM_019016 ENSG00000167916 KRT24 K24|KA24 keratin 24 protein-coding 121.833-55 chr5 15097277 15097734 + 0.666667 NA Intergenic L2c|LINE|L2 169055 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 145.5-68 chr6 67348380 67348725 + 0.666667 NA Intergenic Intergenic -706799 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 256.333-25 chr8 118560960 118561367 + 0.666667 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -59838 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 139.667-77 chr5 97766213 97766628 + 0.666667 NA Intergenic Intergenic -74338 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 138.333-79 chr4 31887694 31888003 + 0.666667 NA Intergenic Intergenic -109531 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 156-14 chr11 60347036 60347387 + 0.666667 NA Intergenic HUERS-P3-int|LTR|ERV1 12329 NM_139249 245802 Hs.662211 NM_139249 ENSG00000166926 MS4A6E - membrane spanning 4-domains A6E protein-coding 201-17 chr16 61459979 61460547 + 0.666667 NA Intergenic Intergenic -404497 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 117-99 chr6 107804222 107804520 + 0.666667 NA intron (NM_198081, intron 1 of 7) intron (NM_198081, intron 1 of 7) 19942 NM_001286408 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 Scm polycomb group protein like 4 protein-coding 166-51 chr5 94006202 94006496 + 0.666667 NA intron (NR_028080, intron 3 of 8) L1MD1|LINE|L1 105314 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 143.667-15 chr1 244120725 244121117 + 0.666667 NA Intergenic Intergenic 67716 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 167-44 chr5 30761705 30762034 + 0.666667 NA Intergenic Intergenic -431817 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 157-87 chr9 79328229 79328518 + 0.666667 NA Intergenic L2b|LINE|L2 -182707 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 181.833-52 chr8 91182653 91183183 + 0.666667 NA intron (NR_148895, intron 7 of 10) L2b|LINE|L2 -22567 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 146.5-50 chr21 33091822 33092163 + 0.666667 NA Intergenic AluJb|SINE|Alu 21851 NM_138983 116448 Hs.56663 NM_138983 ENSG00000184221 OLIG1 BHLHB6|BHLHE21 oligodendrocyte transcription factor 1 protein-coding 269.334-3 chr12 106490648 106491432 + 0.666667 NA intron (NM_001160708, intron 23 of 27) intron (NM_001160708, intron 23 of 27) -91867 NM_213594 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 200.833-25 chr3 150543499 150544195 + 0.666667 NA 3' UTR (NM_014445, exon 3 of 3) 3' UTR (NM_014445, exon 3 of 3) 2649 NM_014445 27230 Hs.518326 NM_014445 ENSG00000120742 SERP1 RAMP4 stress associated endoplasmic reticulum protein 1 protein-coding 137.333-106 chr8 140461521 140461885 + 0.666667 NA Intergenic AluSp|SINE|Alu -3124 NM_031466 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 166.667-6 chr10 12900542 12900920 + 0.666667 NA intron (NM_001282658, intron 6 of 6) intron (NM_001282658, intron 6 of 6) 100982 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 121.833-26 chr18 63747434 63747652 + 0.666667 NA Intergenic Intergenic -5504 NM_001040147 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 161.834-5 chr5 15428181 15428701 + 0.666667 NA Intergenic L1MD1|LINE|L1 -71739 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 117.833-59 chr4 100072971 100073341 + 0.666667 NA Intergenic Charlie1|DNA|hAT-Charlie -116877 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 196-8 chr10 74703486 74703949 + 0.666667 NA intron (NM_001369124, intron 9 of 9) L1MC4a|LINE|L1 -121538 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 115.333-26 chr13 79726798 79727069 + 0.666667 NA Intergenic Intergenic -77453 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 143.333-94 chr8 131623581 131623911 + 0.666667 NA Intergenic Intergenic -280347 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 128.667-32 chr13 31702114 31702597 + 0.666667 NA Intergenic Intergenic -37171 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 225-39 chr8 128075219 128075743 + 0.666667 NA intron (NR_003367, intron 6 of 8) L1ME3G|LINE|L1 26329 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 138.333-108 chr8 104298572 104298929 + 0.666667 NA Intergenic L1MEd|LINE|L1 -41046 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 174.667-6 chr1 212888764 212889399 + 0.666667 NA intron (NM_014053, intron 7 of 9) intron (NM_014053, intron 7 of 9) 30806 NM_014053 28982 Hs.7055 NM_014053 ENSG00000162769 FLVCR1 AXPC1|FLVCR|MFSD7B|PCA|PCARP|SLC49A1 feline leukemia virus subgroup C cellular receptor 1 protein-coding 127.833-21 chr14 30721112 30721588 + 0.666667 NA intron (NM_016106, intron 21 of 24) intron (NM_016106, intron 21 of 24) 99031 NM_001257376 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 126.167-59 chr3 169751941 169752282 + 0.666667 NA Intergenic L2a|LINE|L2 12949 NR_001566 7012 Hs.436182 NR_001566 ENSG00000277925 TERC DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR telomerase RNA component ncRNA 169-61 chr8 117761549 117761913 + 0.666667 NA Intergenic Intergenic 159182 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 126.5-2 chr1 176083912 176084136 + 0.666667 NA intron (NM_022457, intron 10 of 19) intron (NM_022457, intron 10 of 19) -115484 NR_002998 677679 NR_002998 ENSG00000252906 SCARNA3 HBI-100 small Cajal body-specific RNA 3 ncRNA 193.333-18 chr15 26827960 26828404 + 0.666667 NA Intergenic MER41C|LTR|ERV1 -38880 NM_000810 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 207-40 chr4 84767829 84768262 + 0.666667 NA intron (NM_014991, intron 30 of 67) AluJo|SINE|Alu 184918 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 229-36 chr5 146257127 146257787 + 0.666667 NA intron (NM_018989, intron 10 of 20) intron (NM_018989, intron 10 of 20) 53852 NM_018989 54439 Hs.61441 NM_018989 ENSG00000091009 RBM27 ARRS1|Psc1|ZC3H18|ZC3H20 RNA binding motif protein 27 protein-coding 182.834-7 chr9 32933078 32933763 + 0.666667 NA Intergenic Intergenic 68156 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 115.333-22 chr13 30130497 30130736 + 0.666667 NA Intergenic Intergenic -21741 NR_046998 100874146 Hs.574116 NR_046998 ENSG00000224511 LINC00365 - long intergenic non-protein coding RNA 365 ncRNA 136.833-16 chr12 88050030 88050319 + 0.666667 NA TTS (NM_001009894) TTS (NM_001009894) 14638 NM_001009894 91298 Hs.591009 NM_001009894 ENSG00000133641 C12orf29 - chromosome 12 open reading frame 29 protein-coding 137.333-62 chr3 90028368 90028732 + 0.666667 NA Intergenic L1MD|LINE|L1 920929 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 116.667-23 chr12 50988589 50988872 + 0.666667 NA intron (NR_033422, intron 15 of 17) AluJr|SINE|Alu 20485 NM_001174130 4891 Hs.505545 NM_000617 ENSG00000110911 SLC11A2 AHMIO1|DCT1|DMT1|NRAMP2 solute carrier family 11 member 2 protein-coding 135.5-8 chr10 13443550 13443880 + 0.666667 NA intron (NM_001369863, intron 8 of 8) L1ME4c|LINE|L1 59261 NM_152751 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 139.833-60 chr4 169713482 169713838 + 0.666667 NA intron (NM_001243374, intron 11 of 11) intron (NM_001243374, intron 11 of 11) 44284 NM_017867 54969 Hs.406756 NM_017867 ENSG00000056050 HPF1 C4orf27 histone PARylation factor 1 protein-coding 195.833-6 chr12 5856105 5856566 + 0.666667 NA intron (NM_001278596, intron 3 of 25) Charlie25|DNA|hAT-Charlie 88924 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 183.833-32 chr4 167060728 167061068 + 0.666667 NA intron (NM_001204354, intron 2 of 9) MIR|SINE|MIR 173528 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 175-23 chr15 61304971 61305382 + 0.666667 NA Intergenic Intergenic -75874 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 156.667-41 chr17 39503483 39503827 + 0.666667 NA intron (NM_015083, intron 6 of 13) intron (NM_015083, intron 6 of 13) 42169 NM_015083 51755 Hs.345028 NM_015083 ENSG00000167258 CDK12 CRK7|CRKR|CRKRS cyclin dependent kinase 12 protein-coding 126.667-112 chr9 7006702 7006970 + 0.666667 NA intron (NR_148680, intron 13 of 21) intron (NR_148680, intron 13 of 21) 249486 NM_001354000 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 179-34 chr3 7842696 7843337 + 0.666667 NA Intergenic Intergenic 173291 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 183.667-20 chr12 1278468 1278793 + 0.666667 NA intron (NR_027948, intron 14 of 19) intron (NR_027948, intron 14 of 19) -221861 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 141.333-14 chr10 116857618 116857904 + 0.666667 NA intron (NM_001242699, intron 3 of 13) AluSz|SINE|Alu -8039 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 142.833-9 chr11 113933724 113934145 + 0.666667 NA intron (NM_006028, intron 6 of 8) intron (NM_006028, intron 6 of 8) 25093 NM_001363563 9177 Hs.241377 NM_006028 ENSG00000149305 HTR3B 5-HT3B 5-hydroxytryptamine receptor 3B protein-coding 185.167-6 chr11 105492780 105493315 + 0.666667 NA Intergenic Intergenic -117026 NM_001077244 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 138-61 chr2 214436594 214436848 + 0.666667 NA non-coding (NR_159945, exon 3 of 5) non-coding (NR_159945, exon 3 of 5) 25667 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 137.833-52 chr8 109092429 109092656 + 0.666667 NA intron (NM_003301, intron 2 of 2) AluSx|SINE|Alu 5914 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 133.333-126 chr9 33910041 33910376 + 0.666667 NA intron (NM_017811, intron 3 of 4) AluSx1|SINE|Alu 24156 NM_001282530 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 136.5-27 chr12 119830251 119830539 + 0.666667 NA intron (NM_007174, intron 7 of 46) intron (NM_007174, intron 7 of 46) 46925 NM_001206999 11113 Hs.119594 NM_007174 ENSG00000122966 CIT CITK|CRIK|MCPH17|STK21 citron rho-interacting serine/threonine kinase protein-coding 219.333-12 chr14 45491966 45492483 + 0.666667 NA Intergenic L1M1|LINE|L1 223378 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 155.333-11 chr1 235393082 235393543 + 0.666667 NA intron (NM_001287802, intron 2 of 15) AluSc8|SINE|Alu 25885 NM_003193 6905 Hs.744998 NM_003193 ENSG00000284770 TBCE HRD|KCS|KCS1|PEAMO|pac2 tubulin folding cofactor E protein-coding 133.167-52 chr5 164505969 164506395 + 0.666667 NA intron (NR_105065, intron 2 of 3) intron (NR_105065, intron 2 of 3) 35903 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 157.5-12 chr12 47357006 47357295 + 0.666667 NA Intergenic HAL1|LINE|L1 7119 NR_039715 100616478 NR_039715 ENSG00000264906 MIR4494 - microRNA 4494 ncRNA 128.667-21 chr10 91140113 91140336 + 0.666667 NA Intergenic FLAM_C|SINE|Alu 12856 NR_002779 119369 Hs.441287 NR_002779 NUDT9P1 C10orf98|bA56M3.1 nudix hydrolase 9 pseudogene 1 pseudo 135.667-79 chr4 103074237 103074645 + 0.666667 NA intron (NM_001370207, intron 1 of 10) intron (NM_001370207, intron 1 of 10) 2320 NM_001370203 133308 Hs.546482 NM_178833 ENSG00000164038 SLC9B2 NHA2|NHE10|NHEDC2 solute carrier family 9 member B2 protein-coding 147.333-69 chr5 94989326 94989706 + 0.666667 NA intron (NM_001297777, intron 2 of 19) MER21C|LTR|ERVL 92350 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 174-47 chr4 147347122 147347439 + 0.666667 NA Intergenic Intergenic -2563 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 120.5-76 chr6 62322967 62323229 + 0.666667 NA Intergenic MIR|SINE|MIR -36871 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 156.667-86 chr8 138778945 138779261 + 0.666667 NA intron (NM_152888, intron 14 of 64) L1MC5|LINE|L1 134938 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 232-23 chr4 65419049 65419632 + 0.666667 NA intron (NM_001281767, intron 6 of 16) intron (NM_001281767, intron 6 of 16) 250148 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 131.333-69 chr3 74375573 74375868 + 0.666667 NA intron (NM_020872, intron 4 of 21) MLT1D|LTR|ERVL-MaLR 145420 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 168.167-50 chr7 6333420 6333750 + 0.666667 NA intron (NM_001037163, intron 1 of 1) AluJo|SINE|Alu 15382 NM_001037163 84792 Hs.696146 NM_001037163 ENSG00000286075 FAM220A ACPIN1|C7orf70|SIPAR family with sequence similarity 220 member A protein-coding 202.333-36 chr5 125066300 125066853 + 0.666667 NA intron (NR_109882, intron 2 of 5) MIRb|SINE|MIR 29745 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 207-11 chr14 32008381 32008691 + 0.666667 NA Intergenic AluJr4|SINE|Alu 63683 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 183.167-6 chr10 22628779 22629281 + 0.666667 NA intron (NM_005028, intron 1 of 9) MER4B|LTR|ERV1 85078 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 115.833-20 chr14 53742220 53742489 + 0.666667 NA Intergenic Intergenic 206130 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 116.333-67 chr4 34517098 34517289 + 0.666667 NA Intergenic Intergenic -247446 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 202.667-41 chr6 158518561 158519011 + 0.666667 NA Intergenic MER63C|DNA|hAT-Blackjack -17650 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 124.333-53 chr20 1111444 1111713 + 0.666667 NA Intergenic L1M4|LINE|L1 -1651 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 215.333-12 chr14 28406140 28406521 + 0.666667 NA Intergenic Intergenic 358989 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 143.667-45 chr16 21285502 21285793 + 0.666667 NA intron (NM_001888, intron 1 of 9).2 LTR49-int|LTR|ERV1 -15202 NR_026675 400508 Hs.578949 NM_001101368 CRYM-AS1 NCRNA00169 CRYM antisense RNA 1 ncRNA 202-14 chr16 8266021 8266624 + 0.666667 NA Intergenic L1PB3|LINE|L1 323516 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 176.333-39 chr21 33231247 33231708 + 0.666667 NA intron (NM_207584, intron 1 of 8) intron (NM_207584, intron 1 of 8) 1539 NM_000874 3455 Hs.708195 NM_000874 ENSG00000159110 IFNAR2 IFN-R|IFN-alpha-REC|IFNABR|IFNARB|IMD45 interferon alpha and beta receptor subunit 2 protein-coding 132.333-18 chr11 13099673 13100005 + 0.666667 NA Intergenic AluJb|SINE|Alu 90523 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 183.333-49 chr5 128392261 128392785 + 0.666667 NA intron (NM_001999, intron 10 of 64) intron (NM_001999, intron 10 of 64) 145722 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 183-11 chr15 73667303 73667626 + 0.666667 NA Intergenic L1ME2|LINE|L1 -16817 NM_025240 80381 Hs.744915 NM_025240 ENSG00000103855 CD276 4Ig-B7-H3|B7-H3|B7H3|B7RP-2 CD276 molecule protein-coding 123.333-47 chr17 53701079 53701424 + 0.666667 NA Intergenic Intergenic -121676 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 176.167-14 chr16 6112042 6112557 + 0.666667 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 92596 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 168.667-32 chr2 64004627 64004943 + 0.666667 NA intron (NM_001005739, intron 1 of 22) Charlie4a|DNA|hAT-Charlie 14643 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 242.5-10 chr21 30636739 30637109 + 0.666667 NA Intergenic Intergenic 1718 NM_181616 337976 Hs.553698 NM_181616 ENSG00000184032 KRTAP20-2 KAP20.2 keratin associated protein 20-2 protein-coding 174.333 chr1 44230615 44230969 + 0.666667 NA intron (NR_110056, intron 2 of 3) intron (NR_110056, intron 2 of 3) 13491 NR_046817 100874278 Hs.132497 NR_046817 ENSG00000233602 ERI3-IT1 - ERI3 intronic transcript 1 ncRNA 132.5-72 chr5 30696510 30696717 + 0.666667 NA Intergenic L1P2|LINE|L1 -497073 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 126.167-54 chr3 114506944 114507352 + 0.666667 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) 53555 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 169.167-30 chr3 64220186 64220623 + 0.666667 NA intron (NM_001370528, intron 1 of 7) intron (NM_001370528, intron 1 of 7) 5062 NM_198859 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 186.333-47 chr4 114857702 114858141 + 0.666667 NA intron (NM_022569, intron 7 of 13) ERV3-16A3_I-int|LTR|ERVL 201162 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 223.5-27 chr6 5309500 5309948 + 0.666667 NA intron (NM_006567, intron 1 of 6) L1MC4a|LINE|L1 48211 NM_006567 10667 Hs.484547 NM_006567 ENSG00000145982 FARS2 COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS phenylalanyl-tRNA synthetase 2, mitochondrial protein-coding 208.333-28 chr3 66253454 66253861 + 0.666667 NA intron (NM_001350992, intron 2 of 8) MLT1D|LTR|ERVL-MaLR 32654 NM_001350991 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 126.167-33 chr17 61300725 61301018 + 0.666667 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 66833 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 203.5-2 chr1 48843629 48843984 + 0.666667 NA intron (NR_136623, intron 5 of 12) MIR3|SINE|MIR -66837 NM_001349795 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 131.667-58 chr2 56911363 56911673 + 0.666667 NA Intergenic Intergenic -725748 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 244.333-3 chr1 151952995 151953683 + 0.666667 NA Intergenic LTR66|LTR|ERVL 40520 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 188.5-24 chr18 6172257 6172586 + 0.666667 NA intron (NM_001365769, intron 12 of 16) intron (NM_001365769, intron 12 of 16) -84323 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 122-60 chr4 58274275 58274524 + 0.666667 NA Intergenic Intergenic 261929 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 150.667-6 chr1 115751610 115752040 + 0.666667 NA intron (NM_001232, intron 1 of 10) L2b|LINE|L2 16980 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 191.167-11 chr19 31491398 31491756 + 0.666667 NA Intergenic Intergenic -96612 NM_001278577 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 184.167-31 chr3 99364504 99364780 + 0.666667 NA Intergenic MER5B|DNA|hAT-Charlie -273952 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 177-57 chr5 141946414 141946860 + 0.666667 NA intron (NM_016580, intron 3 of 3) intron (NM_016580, intron 3 of 3) 12425 NM_016580 51294 Hs.439474 NM_016580 ENSG00000113555 PCDH12 VE-cadherin-2|VECAD2 protocadherin 12 protein-coding 135.167-75 chr5 26748524 26748970 + 0.666667 NA Intergenic Intergenic 289839 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 210.167-5 chr10 12014700 12015087 + 0.666667 NA intron (NM_080599, intron 3 of 21) intron (NM_080599, intron 3 of 21) 27916 NM_015542 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense mediated mRNA decay protein-coding 142.5-6 chr1 205068019 205068304 + 0.666667 NA intron (NM_001346083, intron 16 of 22) intron (NM_001346083, intron 16 of 22) 16299 NM_203376 388730 Hs.146928 NM_203376 ENSG00000174529 TMEM81 HC3107|KVLA2788|UNQ2788 transmembrane protein 81 protein-coding 121.667-95 chr8 53862259 53862606 + 0.666667 NA intron (NM_001286674, intron 1 of 2) intron (NM_001286674, intron 1 of 2) 10637 NM_001286675 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 162-45 chr3 104341577 104342089 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger -817717 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 157-42 chr2 181103265 181103546 + 0.666667 NA Intergenic Intergenic -20432 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 142.333-84 chr5 102124832 102125209 + 0.666667 NA Intergenic L1MCa|LINE|L1 171264 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 122.833-13 chr11 26524319 26524537 + 0.666667 NA intron (NM_031418, intron 6 of 26) intron (NM_031418, intron 6 of 26) 47835 NM_145650 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 122.333-45 chr17 28308492 28308773 + 0.666667 NA Intergenic L2c|LINE|L2 -1250 NR_028334 284085 Hs.371796 NM_173624 ENSG00000265480 KRT18P55 - keratin 18 pseudogene 55 pseudo 113.333-96 chr5 168194416 168194849 + 0.666667 NA intron (NM_001368145, intron 13 of 26) intron (NM_001368145, intron 13 of 26) 28787 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 114.667-112 chr6 164172804 164173083 + 0.666667 NA Intergenic Intergenic -501459 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 119.333-62 chr21 23651977 23652255 + 0.666667 NA Intergenic Intergenic -267281 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 116.833-39 chr4 14636575 14636952 + 0.666667 NA intron (NR_126435, intron 3 of 6) intron (NR_126435, intron 3 of 6) 251406 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 134.333-94 chr6 24782692 24783070 + 0.666667 NA intron (NM_015895, intron 4 of 6) intron (NM_015895, intron 4 of 6) 7468 NM_001251991 51053 Hs.234896 NM_015895 ENSG00000112312 GMNN Gem|MGORS6 geminin DNA replication inhibitor protein-coding 197-22 chr2 58338535 58338954 + 0.666667 NA Intergenic Intergenic 62867 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 166.333-17 chr12 39862803 39863129 + 0.666667 NA intron (NM_052885, intron 6 of 9) intron (NM_052885, intron 6 of 9) 236783 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 117.333-77 chr4 32506416 32506750 + 0.666667 NA Intergenic THE1D-int|LTR|ERVL-MaLR 155545 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 226.167-8 chr12 57918958 57919424 + 0.666667 NA Intergenic MLT1L|LTR|ERVL-MaLR 16973 NR_038269 100506844 Hs.90286 NR_038269 GIHCG - GIHCG inhibitor of miR-200b/200a/429 expression ncRNA 130-38 chr15 61771365 61771694 + 0.666667 NA Intergenic AluJb|SINE|Alu 41611 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 124.167-41 chr2 3830583 3830853 + 0.666667 NA intron (NM_001287444, intron 10 of 10) intron (NM_001287444, intron 10 of 10) 123876 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 118.333-70 chr3 34870653 34870862 + 0.666667 NA Intergenic MIR|SINE|MIR 523266 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 161.667-45 chr2 172421013 172421419 + 0.666667 NA Intergenic Intergenic -6120 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 158.667-53 chr20 49777834 49778175 + 0.666667 NA Intergenic L1MB8|LINE|L1 -34709 NM_001260491 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 145.333-102 chr9 83003834 83004161 + 0.666667 NA intron (NM_152573, intron 9 of 16) intron (NM_152573, intron 9 of 16) 59145 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 139.5-36 chr21 28844495 28844955 + 0.666667 NA Intergenic L1ME3G|LINE|L1 40642 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 125.5-62 chr5 29349315 29349740 + 0.666667 NA Intergenic L1MEg|LINE|L1 46449 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 140.667-79 chr7 54772274 54772645 + 0.666667 NA intron (NR_110040, intron 1 of 2) L1ME2|LINE|L1 13146 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 225.833-14 chr5 94273062 94273568 + 0.666667 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -161616 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 151.667-43 chr2 120182125 120182502 + 0.666667 NA Intergenic Intergenic 41087 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 121.5-71 chr4 21471876 21472128 + 0.666667 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -7244 NR_107018 102465859 NR_107018 ENSG00000283281 MIR7978 hsa-mir-7978 microRNA 7978 ncRNA 146.667-5 chr1 171425144 171425546 + 0.666667 NA Intergenic MER50B|LTR|ERV1 -60185 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 215.667-6 chr1 224562365 224562860 + 0.666667 NA intron (NR_136295, intron 2 of 7) MSTB|LTR|ERVL-MaLR -53705 NM_001322305 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 116.5-48 chr3 30149019 30149270 + 0.666667 NA Intergenic L1MC4|LINE|L1 -214988 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 146.667-73 chr6 6306538 6307072 + 0.666667 NA intron (NM_000129, intron 2 of 14) intron (NM_000129, intron 2 of 14) 13886 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 227.5-5 chr10 34237746 34238295 + 0.666667 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -465340 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 145.333-26 chr14 56196004 56196426 + 0.666667 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 77804 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 164-18 chr16 13796767 13797058 + 0.666667 NA Intergenic Intergenic -123245 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 191.5-25 chr2 151459329 151459790 + 0.666667 NA intron (NM_001177665, intron 24 of 33) intron (NM_001177665, intron 24 of 33) 49657 NM_001177665 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 122.667-40 chr2 42516243 42516543 + 0.666667 NA intron (NM_001282755, intron 2 of 17) intron (NM_001282755, intron 2 of 17) 21824 NM_001282755 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 157.833-48 chr4 55079066 55079578 + 0.666667 NA 3' UTR (NM_002253, exon 30 of 30) 3' UTR (NM_002253, exon 30 of 30) 46273 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 193.834-4 chr11 109830975 109831576 + 0.666667 NA Intergenic L4_C_Mam|LINE|RTE-X -262117 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 137.667-99 chrX 28385148 28385518 + 0.666667 NA Intergenic L1MA4A|LINE|L1 110330 NR_106750 102465140 NR_106750 ENSG00000277569 MIR6134 hsa-mir-6134 microRNA 6134 ncRNA 139-36 chr20 61325151 61325463 + 0.666667 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) 73046 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 212-17 chr2 45978072 45978775 + 0.666667 NA intron (NM_005400, intron 3 of 14) intron (NM_005400, intron 3 of 14) -318984 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 133.333-37 chr14 81138668 81138918 + 0.666667 NA intron (NM_000369, intron 8 of 9) intron (NM_000369, intron 8 of 9) 64041 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 195.333-42 chr5 28736459 28736922 + 0.666667 NA Intergenic Intergenic -190180 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 156.834 chr1 71943070 71943621 + 0.666667 NA intron (NM_173808, intron 1 of 6) (TA)n|Simple_repeat|Simple_repeat -106333 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 136.333-6 chr10 13266785 13267183 + 0.666667 NA Intergenic AluSx1|SINE|Alu -32610 NM_145314 221044 Hs.112998 NM_145314 ENSG00000165623 UCMA C10orf49|GRP|GRP/UCMA upper zone of growth plate and cartilage matrix associated protein-coding 141.833-4 chr1 238787996 238788459 + 0.666667 NA Intergenic L2a|LINE|L2 -302210 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 113.667-43 chr15 64484115 64484467 + 0.666667 NA Intergenic CR1_Mam|LINE|CR1 -15129 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 198.5-24 chr2 154921634 154922002 + 0.666667 NA Intergenic L1ME1|LINE|L1 223123 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 142.333-49 chr2 36696895 36697193 + 0.666667 NA intron (NM_001177969, intron 1 of 14) intron (NM_001177969, intron 1 of 14) 337 NM_001328661 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 144.167-17 chr11 131331509 131332028 + 0.666667 NA Intergenic MER49|LTR|ERV1 -38847 NM_001352003 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 122.667-57 chr22 17806823 17807064 + 0.666667 NA intron (NM_015241, intron 29 of 31) intron (NM_015241, intron 29 of 31) 29653 NR_103718 200298 Hs.517397 NR_103718 ENSG00000269220 LINC00528 C22orf37 long intergenic non-protein coding RNA 528 ncRNA 137-26 chr12 107026864 107027202 + 0.666667 NA intron (NM_004075, intron 1 of 12) intron (NM_004075, intron 1 of 12) -39867 NM_025198 80298 Hs.5009 NM_025198 ENSG00000120832 MTERF2 MTERFD3|mTERFL mitochondrial transcription termination factor 2 protein-coding 212.833-24 chr8 79433270 79433777 + 0.666667 NA Intergenic L1MA5A|LINE|L1 101335 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 168.333-26 chr2 40857534 40857786 + 0.666667 NA Intergenic L1MB7|LINE|L1 -345225 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 142.667-53 chr2 156437210 156437498 + 0.666667 NA intron (NM_000408, intron 1 of 16) intron (NM_000408, intron 1 of 16) 975 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 157.5-4 chr10 28333270 28333713 + 0.666667 NA Intergenic Intergenic -30427 NM_001318170 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 249-6 chr15 62674413 62674839 + 0.666667 NA intron (NM_015059, intron 7 of 55) AluSz|SINE|Alu 27315 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 134.833-21 chr17 10397259 10397572 + 0.666667 NA intron (NM_002472, intron 30 of 39) intron (NM_002472, intron 30 of 39) 14283 NR_125367 100128560 Hs.661174 NR_125367 MYHAS - myosin heavy chain gene cluster antisense RNA ncRNA 152.667-39 chr18 76017581 76017865 + 0.666667 NA Intergenic L1MEg1|LINE|L1 -105275 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 165.833-16 chr14 40333386 40333930 + 0.666667 NA Intergenic MER21C|LTR|ERVL -621053 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 168.5-36 chr3 26644467 26645076 + 0.666667 NA intron (NM_001317810, intron 2 of 2) L1MC4|LINE|L1 20104 NM_001317810 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 178.333-4 chr1 156065322 156065756 + 0.666667 NA intron (NR_133653, intron 1 of 3) intron (NR_133653, intron 1 of 3) 4379 NM_020387 57111 Hs.632469 NM_020387 ENSG00000132698 RAB25 CATX-8|RAB11C RAB25, member RAS oncogene family protein-coding 129.667 chr1 38862169 38862672 + 0.666667 NA TTS (NM_012333) TTS (NM_012333) -2648 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 183.5-49 chr4 174068423 174068733 + 0.666667 NA Intergenic Intergenic 151820 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 245.5-24 chr7 7074564 7075250 + 0.666667 NA TTS (NR_034022) TTS (NR_034022) -7862 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 241.334-5 chr8 102426579 102427261 + 0.666667 NA Intergenic AluJo|SINE|Alu -14220 NM_015902 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 380.5-2 chr8 91927971 91928907 + 0.666667 NA Intergenic Intergenic 89241 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 115.833-47 chr3 113238113 113238428 + 0.666667 NA intron (NM_001301861, intron 2 of 19) intron (NM_001301861, intron 2 of 19) 26154 NM_001301861 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 238-28 chr8 114848564 114849008 + 0.666667 NA Intergenic Charlie1b|DNA|hAT-Charlie 819227 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 242.5-6 chr14 49484212 49484741 + 0.666667 NA Intergenic L3|LINE|CR1 101904 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 184-4 chr1 204271182 204271599 + 0.666667 NA intron (NM_014935, intron 3 of 22) L2b|LINE|L2 -57402 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 118.667-83 chr4 23433713 23433965 + 0.666667 NA Intergenic MLT1A1|LTR|ERVL-MaLR 447453 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 120.167-41 chr2 165101188 165101547 + 0.666667 NA intron (NM_006922, intron 21 of 27) intron (NM_006922, intron 21 of 27) 102683 NM_006922 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 146.333-18 chr11 84259987 84260254 + 0.666667 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) 13160 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 135.5-68 chr6 73371126 73371457 + 0.666667 NA Intergenic Intergenic -1499 NM_001080507 441161 Hs.671212 NM_001080507 ENSG00000203907 OOEP C6orf156|FLOPED|HOEP19|KHDC2 oocyte expressed protein protein-coding 174.833-47 chr7 32319765 32320168 + 0.666667 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) -20638 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 128-27 chr14 21614244 21614546 + 0.666667 NA Intergenic Helitron3Na_Mam|RC|Helitron 20545 NM_001005466 26534 Hs.554580 NM_001005466 ENSG00000255582 OR10G2 OR14-41 olfactory receptor family 10 subfamily G member 2 protein-coding 147-15 chr12 66398765 66399087 + 0.666667 NA intron (NM_001366722, intron 16 of 24) L2b|LINE|L2 96381 NR_135080 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 196.667-48 chr6 105931258 105931741 + 0.666667 NA Intergenic Intergenic -154837 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 142.333-86 chr6 55442093 55442472 + 0.666667 NA intron (NR_109869, intron 3 of 4) L1MC3|LINE|L1 114813 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 137.333-102 chr8 128279270 128279523 + 0.666667 NA Intergenic L1PB1|LINE|L1 129280 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 145.167-37 chr20 34541953 34542277 + 0.666667 NA Intergenic Intergenic -4729 NM_181509 84557 Hs.632273 NM_032514 ENSG00000101460 MAP1LC3A ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3 microtubule associated protein 1 light chain 3 alpha protein-coding 142.833-39 chr2 76910435 76911021 + 0.666667 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -75237 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 184.333-22 chr2 4386456 4386836 + 0.666667 NA Intergenic L1MA4|LINE|L1 269576 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 161-33 chr2 188290012 188290459 + 0.666667 NA Intergenic Intergenic -1434 NM_001252668 51454 Hs.470887 NM_016315 ENSG00000144366 GULP1 CED-6|CED6|GULP GULP PTB domain containing engulfment adaptor 1 protein-coding 127.333-58 chr2 199477454 199477766 + 0.666667 NA Intergenic Intergenic -6344 NM_015265 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 122.333-20 chr11 99651580 99651877 + 0.666667 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 95583 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 141.833-24 chr3 118306350 118306639 + 0.666667 NA Intergenic L1MA3|LINE|L1 -335274 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 190-39 chr3 87131121 87131519 + 0.666667 NA intron (NR_104153, intron 1 of 2) L1PA15|LINE|L1 42040 NR_047469 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 259.167-8 chr3 89645258 89645783 + 0.666667 NA Intergenic L1ME3A|LINE|L1 537899 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 159.333-58 chr4 103183830 103184118 + 0.666667 NA intron (NM_001813, intron 9 of 48) L1ME4b|LINE|L1 14369 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 171-54 chr7 17338331 17338636 + 0.666667 NA intron (NM_001621, intron 9 of 10) AluJo|SINE|Alu -36434 NR_110014 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 195.333-37 chr3 180432623 180432929 + 0.666667 NA Intergenic L2|LINE|L2 18603 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 129.833-62 chr6 124548242 124548482 + 0.666667 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 265357 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 139.167-41 chr2 162466866 162467225 + 0.666667 NA intron (NM_033272, intron 6 of 15) Tigger19b|DNA|TcMar-Tigger 122677 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 192.167-31 chr4 71115357 71115972 + 0.666667 NA Intergenic Intergenic -71595 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 145-22 chr12 24830860 24831161 + 0.666667 NA intron (NM_001178091, intron 8 of 9) Tigger2a|DNA|TcMar-Tigger 71212 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 130-88 chr6 63700535 63701006 + 0.666667 NA intron (NM_001370350, intron 8 of 14) AluSc5|SINE|Alu 54244 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 175.333-43 chr3 190841376 190841688 + 0.666667 NA Intergenic Intergenic 21162 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 165.333-58 chr7 7665520 7665771 + 0.666667 NA intron (NM_002947, intron 4 of 7) L1ME1|LINE|L1 24893 NM_001302350 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 148.833-25 chr17 59485141 59485539 + 0.666667 NA intron (NR_110813, intron 2 of 2) intron (NR_110813, intron 2 of 2) 41517 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 161.334 chr1 193748145 193748733 + 0.666667 NA Intergenic Intergenic 443694 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 203.333-23 chr2 226276567 226276937 + 0.666667 NA Intergenic L1MD1|LINE|L1 133958 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 117.5-3 chr1 201849793 201850096 + 0.666667 NA intron (NM_018085, intron 4 of 23) intron (NM_018085, intron 4 of 23) -13429 NR_106797 102466724 NR_106797 ENSG00000277681 MIR6739 hsa-mir-6739 microRNA 6739 ncRNA 154.667-26 chr14 73833742 73834053 + 0.666667 NA Intergenic Intergenic -3762 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 141.667-32 chr16 19225486 19225896 + 0.666667 NA intron (NM_001308157, intron 7 of 7) MLT1F2|LTR|ERVL-MaLR 53356 NM_001308157 51760 Hs.258326 NM_016524 ENSG00000103528 SYT17 sytXVII synaptotagmin 17 protein-coding 275-4 chr18 8649673 8650424 + 0.666667 NA Intergenic L1PA7|LINE|L1 40603 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 139.5-55 chr5 94888672 94889210 + 0.666667 NA exon (NM_024717, exon 12 of 23) exon (NM_024717, exon 12 of 23) 192925 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 231.167-30 chr6 163818796 163819276 + 0.666667 NA Intergenic Intergenic -147552 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 170.667-68 chr7 31332265 31332910 + 0.666667 NA Intergenic Intergenic 8139 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 159.667-17 chr10 48621225 48621572 + 0.666667 NA intron (NM_001347738, intron 2 of 10) intron (NM_001347738, intron 2 of 10) -16267 NM_001347737 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 186-2 chr1 163391565 163391883 + 0.666667 NA Intergenic AluJr4|SINE|Alu 31467 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 138.167-12 chr12 5327614 5328000 + 0.666667 NA Intergenic AluJr|SINE|Alu -84656 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 222.333-19 chr2 201145318 201145741 + 0.666667 NA intron (NR_147253, intron 6 of 10) intron (NR_147253, intron 6 of 10) 5254 NM_001202515 8837 Hs.390736 NM_003879 ENSG00000003402 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP CASP8 and FADD like apoptosis regulator protein-coding 194-20 chr14 73331996 73332433 + 0.666667 NA intron (NM_001005743, intron 4 of 12) intron (NM_001005743, intron 4 of 12) -86213 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 171.667-5 chr1 92158396 92158729 + 0.666667 NA Intergenic L1MB1|LINE|L1 -10362 NM_015237 23285 Hs.21554 NM_015237 ENSG00000189195 KIAA1107 - KIAA1107 protein-coding 164.5-26 chr17 62957342 62957731 + 0.666667 NA Intergenic AluSg|SINE|Alu -8699 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 173.5-23 chr17 28025674 28026053 + 0.666667 NA Intergenic Charlie18a|DNA|hAT-Charlie -16814 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 226.667-11 chr15 47113725 47114331 + 0.666667 NA Intergenic Intergenic -70061 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 226.334 chr1 218122819 218123567 + 0.666667 NA Intergenic Charlie7|DNA|hAT-Charlie 79688 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 170.167-34 chr21 23973361 23973925 + 0.666667 NA Intergenic AluSg7|SINE|Alu 347734 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 206.667-50 chr8 137946008 137946394 + 0.666667 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 137344 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 172.667-81 chr8 143228587 143229176 + 0.666667 NA Intergenic MIRb|SINE|MIR 15663 NM_178172 338328 Hs.426410 NM_178172 ENSG00000277494 GPIHBP1 GPI-HBP1|HYPL1D glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 protein-coding 189-32 chr3 161486872 161487204 + 0.666667 NA Intergenic Intergenic -9770 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 121.333-102 chr7 105003893 105004180 + 0.666667 NA Intergenic Intergenic 10105 NR_024586 100216545 Hs.631150 NR_024586 KMT2E-AS1 - KMT2E antisense RNA 1 ncRNA 116.167-18 chr10 104708034 104708503 + 0.666667 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -42052 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 154-38 chr2 73856089 73856436 + 0.666667 NA intron (NR_148670, intron 8 of 12) intron (NR_148670, intron 8 of 12) 27295 NM_001353976 10617 Hs.469018 NM_006463 ENSG00000124356 STAMBP AMSH|MICCAP STAM binding protein protein-coding 161.667-26 chr12 23201369 23201777 + 0.666667 NA Intergenic Intergenic 25937 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 240.333-3 chr10 67630765 67631417 + 0.666667 NA intron (NM_001127384, intron 2 of 17) intron (NM_001127384, intron 2 of 17) 34569 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 209.833-3 chr10 56362918 56363308 + 0.666667 NA Intergenic L1MB8|LINE|L1 -1840 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 117.667-118 chr7 121547002 121547376 + 0.666667 NA Intergenic Intergenic -150821 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 113.667-130 chr8 126837727 126837982 + 0.666667 NA Intergenic MLT1J|LTR|ERVL-MaLR -175300 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 117.667-64 chr2 113952905 113953208 + 0.666667 NA intron (NM_005721, intron 10 of 11) intron (NM_005721, intron 10 of 11) -16266 NR_148507 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 149.667-51 chr3 81637222 81637588 + 0.666667 NA intron (NM_000158, intron 7 of 15) MER44D|DNA|TcMar-Tigger 124240 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 116-85 chr7 20291709 20291937 + 0.666667 NA Intergenic HAL1ME|LINE|L1 -4885 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 185-18 chr14 72326267 72326648 + 0.666667 NA intron (NM_001370288, intron 2 of 16) MSTA|LTR|ERVL-MaLR -190363 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 159.167-2 chr1 180797252 180797725 + 0.666667 NA intron (NR_137330, intron 3 of 12) intron (NR_137330, intron 3 of 12) -115409 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 176.167-35 chr5 32277411 32277839 + 0.666667 NA intron (NM_001294344, intron 1 of 13) AluSz6|SINE|Alu 35314 NM_001294343 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 119.667-66 chr3 173680613 173680962 + 0.666667 NA intron (NM_001365928, intron 3 of 6) intron (NM_001365928, intron 3 of 6) 96353 NM_001365933 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 175.334-2 chr10 99344544 99345091 + 0.666667 NA intron (NM_020348, intron 1 of 10) intron (NM_020348, intron 1 of 10) 15461 NM_020348 26507 Hs.274579 NM_020348 ENSG00000119946 CNNM1 ACDP1|CLP-1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding 134.333-6 chr1 184019844 184020084 + 0.666667 NA intron (NM_001303421, intron 1 of 11) intron (NM_001303421, intron 1 of 11) 17764 NM_001303420 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|ColGalT 2|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 160-53 chr3 100462470 100463064 + 0.666667 NA Intergenic MER2|DNA|TcMar-Tigger -29852 NM_001363876 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 131.667-61 chr2 132778619 132778931 + 0.666667 NA intron (NM_207481, intron 13 of 17) intron (NM_207481, intron 13 of 17) -107249 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 269.667-7 chr11 99622409 99623029 + 0.666667 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 66574 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 124.333-72 chr4 138415085 138415336 + 0.666667 NA intron (NR_051987, intron 2 of 2) intron (NR_051987, intron 2 of 2) 105499 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 134.667-108 chr8 97795158 97795536 + 0.666667 NA intron (NM_018407, intron 1 of 6) AluJr|SINE|Alu 19559 NM_018407 55353 Hs.492314 NM_018407 ENSG00000104341 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 205.333-51 chr5 148399282 148399772 + 0.666667 NA intron (NM_001271723, intron 3 of 20) intron (NM_001271723, intron 3 of 20) 15569 NM_205836 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 160.667-47 chr20 12213861 12214180 + 0.666667 NA Intergenic Intergenic 296127 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 135.667-99 chr6 56493987 56494274 + 0.666667 NA exon (NM_015548, exon 64 of 84) exon (NM_015548, exon 64 of 84) -100002 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 134.5-64 chr6 79925145 79925454 + 0.666667 NA intron (NM_022726, intron 2 of 5) intron (NM_022726, intron 2 of 5) 22254 NM_022726 6785 Hs.101915 NM_022726 ENSG00000118402 ELOVL4 ADMD|CT118|ISQMR|SCA34|STGD2|STGD3 ELOVL fatty acid elongase 4 protein-coding 130 chr1 24973837 24974150 + 0.666667 NA Intergenic AluJb|SINE|Alu -8983 NM_001320672 864 Hs.170019 NM_004350 ENSG00000020633 RUNX3 AML2|CBFA3|PEBP2aC RUNX family transcription factor 3 protein-coding 187.333-23 chr16 84386473 84386898 + 0.666667 NA intron (NM_014861, intron 1 of 26) intron (NM_014861, intron 1 of 26) 18162 NM_001286527 9914 Hs.6168 NM_014861 ENSG00000064270 ATP2C2 SPCA2 ATPase secretory pathway Ca2+ transporting 2 protein-coding 200.333-18 chr2 139652455 139652853 + 0.666667 NA Intergenic Tigger7|DNA|TcMar-Tigger 755330 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 171.333-44 chr3 98844168 98844498 + 0.666667 NA intron (NM_080927, intron 3 of 15) intron (NM_080927, intron 3 of 15) 57362 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 142.833-34 chr2 30294877 30295254 + 0.666667 NA Intergenic Intergenic -51581 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 136.333-25 chr13 58173946 58174268 + 0.666667 NA intron (NR_120416, intron 1 of 2) intron (NR_120416, intron 1 of 2) 8280 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 147.167-48 chr5 73628626 73628923 + 0.666667 NA intron (NM_001177693, intron 1 of 35) intron (NM_001177693, intron 1 of 35) 2616 NM_001080479 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 154.667-33 chr19 29428998 29429394 + 0.666667 NA intron (NR_040029, intron 1 of 9) LTR16C|LTR|ERVL 96556 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 125-21 chr11 66358818 66359129 + 0.666667 NA intron (NR_135761, intron 1 of 1) L1MB4|LINE|L1 10982 NR_135761 102724064 Hs.614641 NR_135761 ENSG00000255468 LOC102724064 - uncharacterized LOC102724064 ncRNA 152.833-13 chr12 51053522 51053809 + 0.666667 NA intron (NM_001243689, intron 3 of 8) intron (NM_001243689, intron 3 of 8) 5338 NM_001351316 25875 Hs.655272 NM_015416 ENSG00000050426 LETMD1 1110019O13Rik|HCCR|HCCR-1|HCCR-2|HCCR1|HCCR2|HCRR-2|SLC55A3 LETM1 domain containing 1 protein-coding 186-30 chr3 132385201 132385693 + 0.666667 NA Intergenic Intergenic -32055 NM_015268 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 140.167-32 chr2 18448801 18449228 + 0.666667 NA Intergenic Intergenic 111639 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 148.333-75 chr4 91123040 91123396 + 0.666667 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 888187 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 128.333-2 chr1 40248709 40249090 + 0.666667 NA intron (NM_001008740, intron 1 of 1) MIR|SINE|MIR 962 NM_001008740 127391 Hs.406265 NM_001008740 ENSG00000188800 TMCO2 dJ39G22.2 transmembrane and coiled-coil domains 2 protein-coding 170-17 chr14 58536438 58536807 + 0.666667 NA intron (NM_001329945, intron 29 of 29) intron (NM_001329945, intron 29 of 29) 96941 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 193.5-8 chr11 82962082 82962599 + 0.666667 NA Intergenic L1PA13|LINE|L1 -60600 NM_001319214 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 203.5-5 chr1 203242877 203243692 + 0.666667 NA Intergenic L1MC2|LINE|L1 -13611 NR_045785 1118 Hs.201688 NM_003465 ENSG00000133063 CHIT1 CHI3|CHIT|CHITD chitinase 1 protein-coding 363.334-4 chr8 132110749 132111939 + 0.666667 NA Intergenic Intergenic -6079 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 269.167-9 chr4 874959 875593 + 0.666667 NA intron (NM_005255, intron 18 of 27) intron (NM_005255, intron 18 of 27) -49147 NM_006651 10815 Hs.478930 NM_006651 ENSG00000168993 CPLX1 CPX-I|CPX1|EIEE63 complexin 1 protein-coding 136.667-102 chr8 64556768 64557213 + 0.666667 NA Intergenic Intergenic 20273 NR_015374 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 160.167-48 chr4 52924136 52924506 + 0.666667 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 62004 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 239.167 chr1 44605489 44606073 + 0.666667 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) 60288 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 177.667-13 chr11 113088808 113089182 + 0.666667 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -125535 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 188.833-15 chr14 51362194 51362506 + 0.666667 NA intron (NR_038358, intron 4 of 4) intron (NR_038358, intron 4 of 4) 28957 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 162.833-14 chr12 92335187 92335702 + 0.666667 NA Intergenic Intergenic -86087 NR_027932 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 ncRNA 177.833-19 chr2 113894766 113895151 + 0.666667 NA intron (NM_001277140, intron 1 of 11) intron (NM_001277140, intron 1 of 11) -3966 NR_110174 101060091 Hs.741753 NR_110174 ACTR3-AS1 - ACTR3 antisense RNA 1 ncRNA 136-45 chr22 37932677 37932995 + 0.666667 NA exon (NM_033386, exon 12 of 16) exon (NM_033386, exon 12 of 16) 20765 NM_032561 84645 Hs.517612 NM_032561 ENSG00000128346 C22orf23 EVG1|dJ1039K5.6 chromosome 22 open reading frame 23 protein-coding 164.667-35 chr2 51985868 51986414 + 0.666667 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -384507 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 134.167-85 chr9 10099191 10099527 + 0.666667 NA intron (NM_002839, intron 3 of 45) MIR|SINE|MIR 299967 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 253.5-16 chr2 106151139 106151716 + 0.666667 NA intron (NM_025076, intron 5 of 14) MSTD|LTR|ERVL-MaLR -12546 NM_001253876 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 136.833-44 chr4 38117396 38117948 + 0.666667 NA intron (NM_001253912, intron 18 of 20) intron (NM_001253912, intron 18 of 20) -2282 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 129-5 chr1 176001907 176002277 + 0.666667 NA intron (NM_022457, intron 15 of 19) L1M4|LINE|L1 -33552 NR_002998 677679 NR_002998 ENSG00000252906 SCARNA3 HBI-100 small Cajal body-specific RNA 3 ncRNA 121.667-17 chr11 94763643 94763943 + 0.666667 NA Intergenic Tigger2a|DNA|TcMar-Tigger -4563 NM_130847 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 163.833-13 chr11 40125229 40125474 + 0.666667 NA intron (NR_047674, intron 1 of 1) MLT1L|LTR|ERVL-MaLR 167779 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 149-10 chr1 105236172 105236531 + 0.666667 NA Intergenic LTR67B|LTR|ERVL 382584 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 138.667-31 chr14 66646115 66646341 + 0.666667 NA intron (NM_001024218, intron 1 of 21) L1MB2|LINE|L1 138821 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 164.5-55 chr7 50949557 50949917 + 0.666667 NA Intergenic L1M2a|LINE|L1 -156284 NM_001371008 190.667-10 chr12 11687938 11688744 + 0.666667 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 38487 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 192.667-16 chr13 71304552 71305019 + 0.666667 NA Intergenic HAL1|LINE|L1 289644 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 167.833-31 chr2 219279834 219280443 + 0.666667 NA intron (NM_001039550, intron 2 of 9) intron (NM_001039550, intron 2 of 9) 772 NM_001039550 3300 Hs.77768 NM_006736 ENSG00000135924 DNAJB2 CMT2T|DSMA5|HSJ-1|HSJ1|HSPF3 DnaJ heat shock protein family (Hsp40) member B2 protein-coding 113.833-59 chr3 185765066 185765283 + 0.666667 NA intron (NR_138486, intron 2 of 15) intron (NR_138486, intron 2 of 15) 2730 NR_049838 100847078 NR_049838 ENSG00000265470 MIR548AQ - microRNA 548aq ncRNA 122.833-4 chr1 59420740 59421043 + 0.666667 NA intron (NM_001350794, intron 5 of 14) intron (NM_001350794, intron 5 of 14) -94739 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 122.833-79 chr7 5766661 5766959 + 0.666667 NA intron (NM_207111, intron 1 of 16) intron (NM_207111, intron 1 of 16) 14853 NM_207116 54476 Hs.487458 NM_019011 ENSG00000011275 RNF216 CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN ring finger protein 216 protein-coding 128.667-75 chr3 99078631 99079118 + 0.666667 NA Intergenic L2a|LINE|L2 -177179 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 125.667-8 chr1 174524066 174524476 + 0.666667 NA intron (NM_001366446, intron 13 of 25) L1MA4A|LINE|L1 76307 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 123.667-80 chr4 162867819 162868258 + 0.666667 NA Intergenic L1PB1|LINE|L1 225590 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 180.333-26 chr19 17194321 17194615 + 0.666667 NA intron (NM_001130065, intron 21 of 39) intron (NM_001130065, intron 21 of 39) -20889 NM_018467 55850 Hs.16187 NM_018467 ENSG00000053501 USE1 D12|MDS032|P31|SLT1 unconventional SNARE in the ER 1 protein-coding 221.5-37 chr8 81057786 81058304 + 0.666667 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 54023 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 143-37 chr2 52203785 52204059 + 0.666667 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -166726 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 116.333-25 chr11 119545236 119545549 + 0.666667 NA Intergenic L1MC|LINE|L1 -120407 NM_001311162 7070 Hs.644697 NM_006288 ENSG00000154096 THY1 CD90|CDw90 Thy-1 cell surface antigen protein-coding 189.333-6 chr12 9228813 9229194 + 0.666667 NA intron (NR_040112, intron 8 of 8) intron (NR_040112, intron 8 of 8) 5204 NR_040112 3 Hs.569125 NR_040112 ENSG00000256069 A2MP1 A2MP alpha-2-macroglobulin pseudogene 1 pseudo 178-6 chr10 77392779 77393092 + 0.666667 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 42063 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 117.167-17 chr12 127608925 127609267 + 0.666667 NA Intergenic L1MC3|LINE|L1 27371 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 183.167-9 chr11 28231441 28231889 + 0.666667 NA intron (NM_001113528, intron 4 of 6) intron (NM_001113528, intron 4 of 6) 123277 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 122.5-76 chr5 165881002 165881493 + 0.666667 NA Intergenic Intergenic 1045123 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 158.167-15 chr17 56074242 56074499 + 0.666667 NA Intergenic Intergenic -79105 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 239.667-31 chr8 64143924 64144492 + 0.666667 NA intron (NR_125826, intron 3 of 4) L1MA4|LINE|L1 224350 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 160-15 chr11 73126184 73126490 + 0.666667 NA intron (NM_014824, intron 2 of 19) AluSg|SINE|Alu 15981 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 131.333-26 chr13 111235212 111235519 + 0.666667 NA intron (NM_001330597, intron 6 of 18) intron (NM_001330597, intron 6 of 18) -5809 NM_001354055 8874 Hs.508738 NM_003899 ENSG00000102606 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor 7 protein-coding 142.167-16 chr11 34422446 34422714 + 0.666667 NA Intergenic Intergenic -16354 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 137.167-26 chr17 70032525 70032954 + 0.666667 NA Intergenic Intergenic -18532 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 156-51 chr3 33544842 33545155 + 0.666667 NA intron (NM_001365634, intron 27 of 35) intron (NM_001365634, intron 27 of 35) -104593 NM_001128161 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 118-101 chr5 171043963 171044352 + 0.666667 NA intron (NM_022897, intron 14 of 27) intron (NM_022897, intron 14 of 27) 182139 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 166.833 chr1 45842210 45842819 + 0.666667 NA intron (NM_001324320, intron 3 of 29) L1MB5|LINE|L1 -21834 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 238.333-9 chr11 106279426 106279932 + 0.666667 NA Intergenic Intergenic 28272 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 149.667-43 chr2 138377528 138377897 + 0.666667 NA Intergenic L1ME1|LINE|L1 -124058 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 133.833-53 chr4 42855831 42856114 + 0.666667 NA Intergenic Intergenic -37294 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 153.667-65 chr6 18166665 18167106 + 0.666667 NA intron (NM_001364614, intron 6 of 21) AluJr|SINE|Alu 11463 NM_001364614 221656 Hs.709336 NM_153042 ENSG00000165097 KDM1B AOF1|C6orf193|LSD2 lysine demethylase 1B protein-coding 113.833-40 chr2 114059879 114060127 + 0.666667 NA Intergenic Intergenic -80019 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 213.333-13 chr14 42792758 42793239 + 0.666667 NA Intergenic Intergenic 1186142 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 189.667-26 chr2 138998989 138999463 + 0.666667 NA Intergenic Intergenic 101902 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 172.167-9 chr10 75101485 75101799 + 0.666667 NA intron (NM_001007272, intron 1 of 3) MIRb|SINE|MIR -2152 NM_016364 51207 Hs.178170 NM_016364 ENSG00000079393 DUSP13 BEDP|DUSP13A|DUSP13B|MDSP|SKRP4|TMDP dual specificity phosphatase 13 protein-coding 142.833-61 chr5 111974950 111975445 + 0.666667 NA intron (NR_046678, intron 3 of 3) MLT1O|LTR|ERVL-MaLR 1735 NM_001142474 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 125-55 chr3 124158367 124158636 + 0.666667 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 25572 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 132.333-106 chr8 90493659 90493981 + 0.666667 NA Intergenic L1PB1|LINE|L1 112243 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 202.167-40 chr8 141986020 141986373 + 0.666667 NA Intergenic Intergenic -190143 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 117.667-56 chr19 52431996 52432252 + 0.666667 NA intron (NM_001351679, intron 2 of 3) intron (NM_001351679, intron 2 of 3) 2976 NM_001351679 147658 Hs.447583 NM_182512 ENSG00000198633 ZNF534 KRBO3 zinc finger protein 534 protein-coding 137.667-10 chr10 47028506 47028963 + 0.666667 NA Intergenic MER21C|LTR|ERVL 117012 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 143.667-26 chr12 38250517 38251052 + 0.666667 NA Intergenic L1MEf|LINE|L1 -65990 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 116.667-17 chr11 4062899 4063295 + 0.666667 NA intron (NM_001277962, intron 5 of 12) L1MB7|LINE|L1 -31588 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 163.333-21 chr13 112116659 112117023 + 0.666667 NA Intergenic Intergenic 9722 NR_120394 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 162.667-21 chr14 61830345 61830700 + 0.666667 NA intron (NM_001367656, intron 1 of 7) L1MEf|LINE|L1 17819 NM_001367656 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 178.167-33 chr3 58005548 58006065 + 0.666667 NA Intergenic Tigger3|DNA|TcMar-Tigger -2616 NM_001164318 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 143.667-95 chr7 12657816 12658198 + 0.666667 NA non-coding (NR_156701, exon 15 of 15) non-coding (NR_156701, exon 15 of 15) -28820 NM_212460 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 177.334-4 chr4 91145115 91145662 + 0.666667 NA intron (NM_001145065, intron 10 of 10) L1PA16|LINE|L1 910357 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 170-84 chr9 89010553 89010891 + 0.666667 NA 3' UTR (NM_016848, exon 12 of 12) 3' UTR (NM_016848, exon 12 of 12) 19254 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 132-44 chr2 184188704 184189048 + 0.666667 NA Intergenic Intergenic -190099 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 149.833-26 chr22 17567470 17567696 + 0.666667 NA intron (NM_001303484, intron 1 of 9) intron (NM_001303484, intron 1 of 9) 4085 NM_031481 83733 Hs.282982 NM_031481 ENSG00000182902 SLC25A18 GC2 solute carrier family 25 member 18 protein-coding 146.167-24 chr16 29554121 29554442 + 0.666667 NA intron (NR_135317, intron 7 of 11) AluYb8|SINE|Alu 40811 NR_135305 440354 Hs.552700 NR_002473 SMG1P2 - SMG1 pseudogene 2 pseudo 276.667 chr1 181375318 181375902 + 0.666667 NA Intergenic MIR|SINE|MIR -107907 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 298.333-9 chr2 158274529 158275358 + 0.666667 NA intron (NM_138803, intron 9 of 13) intron (NM_138803, intron 9 of 13) 108293 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 185.5-6 chr10 53307909 53308265 + 0.666667 NA Intergenic Intergenic -536387 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 140-66 chr5 24494167 24494592 + 0.666667 NA intron (NM_001317222, intron 8 of 10) intron (NM_001317222, intron 8 of 10) 150599 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 149.834 chr11 26363280 26363905 + 0.666667 NA intron (NM_031418, intron 1 of 26) MLT1B|LTR|ERVL-MaLR 31462 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 149.167-48 chr5 62945553 62946091 + 0.666667 NA Intergenic L2b|LINE|L2 367003 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 279.5-15 chr8 62957491 62958126 + 0.666667 NA intron (NM_001304533, intron 6 of 6) L1MC1|LINE|L1 -20053 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 155.667-39 chr2 52160954 52161364 + 0.666667 NA intron (NR_135237, intron 7 of 10) L1MA2|LINE|L1 -209489 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 205.333-59 chr8 14369093 14369654 + 0.666667 NA intron (NM_001322881, intron 2 of 6) L1MC4|LINE|L1 484137 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 231.167-2 chr1 94389730 94390507 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -28259 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 230-4 chr12 7321420 7322015 + 0.666667 NA intron (NM_001080454, intron 6 of 12) MIR|SINE|MIR 17385 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 121.667-32 chr15 88676007 88676260 + 0.666667 NA Intergenic L1M4|LINE|L1 37117 NM_002201 3669 Hs.459265 NM_002201 ENSG00000172183 ISG20 CD25|HEM45 interferon stimulated exonuclease gene 20 protein-coding 118.667-43 chr17 75184193 75184539 + 0.666667 NA Intergenic L2|LINE|L2 -1407 NM_001005849 6613 Hs.380973 NM_006937 ENSG00000188612 SUMO2 HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A small ubiquitin like modifier 2 protein-coding 121.333-36 chr17 52454900 52455175 + 0.666667 NA intron (NR_146898, intron 1 of 3) intron (NR_146898, intron 1 of 3) 64515 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 136.667-72 chr4 106259915 106260251 + 0.666667 NA intron (NM_001290768, intron 5 of 26) intron (NM_001290768, intron 5 of 26) -55527 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 291.667-11 chr12 83754732 83755457 + 0.666667 NA Intergenic Intergenic 1067939 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 176-9 chr14 65642456 65642914 + 0.666667 NA intron (NM_004480, intron 5 of 9) L1ME1|LINE|L1 171583 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 118-9 chr1 167023985 167024229 + 0.666667 NA Intergenic Intergenic 34827 NM_032858 84944 Hs.651245 NM_032858 ENSG00000143194 MAEL CT128|SPATA35 maelstrom spermatogenic transposon silencer protein-coding 141.167-77 chr9 32081214 32081537 + 0.666667 NA Intergenic MER31A|LTR|ERV1 -303228 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 214.667-13 chr14 48548034 48548732 + 0.666667 NA Intergenic L1PA17|LINE|L1 -753369 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 148.333-32 chr14 53615515 53615845 + 0.666667 NA Intergenic MER3|DNA|hAT-Charlie 332804 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 197.333-35 chr3 6217709 6218215 + 0.666667 NA Intergenic Intergenic 587487 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 149.333-84 chr6 140999846 141000235 + 0.666667 NA Intergenic L1MCa|LINE|L1 316226 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 192.333-19 chr19 34947252 34947783 + 0.666667 NA Intergenic L1M5|LINE|L1 16712 NM_175872 126375 Hs.50405 NM_175872 ENSG00000180884 ZNF792 - zinc finger protein 792 protein-coding 129.833-25 chr16 68942846 68943219 + 0.666667 NA intron (NM_024562, intron 14 of 17) AluJb|SINE|Alu 99501 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 181-7 chr10 66090833 66091320 + 0.666667 NA intron (NM_001127384, intron 14 of 17) intron (NM_001127384, intron 14 of 17) 519651 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 230.667-16 chr20 32336382 32336861 + 0.666667 NA Intergenic AluJb|SINE|Alu -21723 NM_001164603 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 218-13 chr14 69386062 69386703 + 0.666667 NA intron (NM_004450, intron 3 of 3) intron (NM_004450, intron 3 of 3) 11917 NM_004450 2079 Hs.509791 NM_004450 ENSG00000100632 ERH DROER ERH mRNA splicing and mitosis factor protein-coding 264-15 chr5 16532287 16532868 + 0.666667 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) -23579 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 168.5-38 chr4 14788939 14789440 + 0.666667 NA intron (NR_126435, intron 2 of 6) L1PA15-16|LINE|L1 98980 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 130.667-32 chr15 96397890 96398134 + 0.666667 NA Intergenic Intergenic 64247 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 143.667-65 chr20 56200097 56200493 + 0.666667 NA Intergenic FLAM_C|SINE|Alu -48437 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 139.833-30 chr17 60992672 60993063 + 0.666667 NA intron (NM_001330413, intron 15 of 25) intron (NM_001330413, intron 15 of 25) 315016 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 205-2 chr10 47181017 47181383 + 0.666667 NA Intergenic Intergenic -118997 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 166.167-50 chr5 119888101 119888399 + 0.666667 NA Intergenic L2c|LINE|L2 258691 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 202.667-4 chr1 75746723 75747337 + 0.666667 NA intron (NM_001286042, intron 7 of 10) intron (NM_001286042, intron 7 of 10) -2017 NR_130749 1744 Hs.525459 NR_130749 DLSTP1 DLSTP dihydrolipoamide S-succinyltransferase pseudogene 1 pseudo 174-25 chr15 81234731 81235155 + 0.666667 NA intron (NM_001352686, intron 2 of 18) MER115|DNA|hAT-Tip100 35467 NM_001352686 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 255.666-3 chr5 149619658 149620419 + 0.666667 NA intron (NM_001001669, intron 7 of 12) AluSz|SINE|Alu 38540 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 124-89 chr7 79912718 79913087 + 0.666667 NA Intergenic L1MC4|LINE|L1 -221929 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 150.333-99 chr8 24340853 24341289 + 0.666667 NA intron (NM_014265, intron 15 of 22) intron (NM_014265, intron 15 of 22) -43214 NR_156422 27299 Hs.521459 NM_014479 ENSG00000134028 ADAMDEC1 M12.219 ADAM like decysin 1 protein-coding 134-3 chr1 41989406 41989634 + 0.666667 NA intron (NR_038261, intron 1 of 3) L2a|LINE|L2 46414 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 124.5-23 chr14 81986470 81986779 + 0.666667 NA Intergenic Intergenic -243486 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 204.167-23 chr5 5430251 5430610 + 0.666667 NA intron (NM_015325, intron 1 of 18) intron (NM_015325, intron 1 of 18) 7753 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 167.333-21 chr12 12535097 12535405 + 0.666667 NA intron (NM_030640, intron 1 of 6).2 intron (NM_030640, intron 1 of 6).2 27612 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 234.5-13 chr2 15719246 15719652 + 0.666667 NA TTS (NR_110201) TTS (NR_110201) 28667 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 269.667-10 chr12 34628056 34628929 + 0.666667 NA Intergenic LTR5B|LTR|ERVK 605996 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 144.5-65 chr4 47292159 47292420 + 0.666667 NA intron (NM_000812, intron 4 of 8) THE1B|LTR|ERVL-MaLR 171413 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 131.167-31 chr16 83577214 83577444 + 0.666667 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) 68983 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 129.333-77 chr6 64719425 64719643 + 0.666667 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -581884 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 182.833-41 chr5 56089037 56089531 + 0.666667 NA Intergenic Intergenic 94117 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 127-49 chr2 74854059 74854325 + 0.666667 NA intron (NM_000189, intron 1 of 17) L1P5|LINE|L1 21537 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 190.333-33 chr2 104754516 104754982 + 0.666667 NA intron (NR_038231, intron 1 of 3) intron (NR_038231, intron 1 of 3) 2970 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 155.333-8 chr1 205646546 205646970 + 0.666667 NA Intergenic (TGGT)n|Simple_repeat|Simple_repeat -13886 NM_001973 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ETS transcription factor ELK4 protein-coding 132.667-83 chr6 99048394 99048660 + 0.666667 NA Intergenic Intergenic -76082 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 134.667-94 chr6 162311322 162311613 + 0.666667 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -415665 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 254.833-10 chr7 8445384 8446103 + 0.666667 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 12134 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 133-72 chr5 27109030 27109263 + 0.666667 NA Intergenic Intergenic -70560 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 141.167 chr1 82067040 82067284 + 0.666667 NA Intergenic Intergenic 264709 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 207.5-16 chr2 37049471 37050160 + 0.666667 NA exon (NM_019024, exon 18 of 36) exon (NM_019024, exon 18 of 36) 34557 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 162.833-18 chr19 14052587 14052874 + 0.666667 NA TTS (NM_001367327) TTS (NM_001367327) 4908 NM_001367327 342979 Hs.444298 NM_001145028 ENSG00000187867 PALM3 - paralemmin 3 protein-coding 131.333-106 chr9 13790781 13791028 + 0.666667 NA Intergenic AluSz|SINE|Alu -137067 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 149.5-70 chr9 34705769 34706285 + 0.666667 NA Intergenic Intergenic 4109 NM_002989 6366 Hs.57907 NM_002989 ENSG00000137077 CCL21 6Ckine|CKb9|ECL|SCYA21|SLC|TCA4 C-C motif chemokine ligand 21 protein-coding 129.333-51 chr2 154834017 154834316 + 0.666667 NA intron (NM_002239, intron 2 of 2) L1MC2|LINE|L1 135471 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 116.167-69 chr7 5468994 5469249 + 0.666667 NA intron (NM_001363441, intron 4 of 4) intron (NM_001363441, intron 4 of 4) 26796 NR_030318 693174 NR_030318 ENSG00000207973 MIR589 MIRN589|hsa-mir-589|mir-589 microRNA 589 ncRNA 139-72 chr7 52476315 52476700 + 0.666667 NA Intergenic Intergenic -559126 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 191.667-53 chr7 85326779 85327216 + 0.666667 NA Intergenic Intergenic -94125 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 120.167-59 chr4 30706979 30707323 + 0.666667 NA Intergenic L1M2|LINE|L1 -13218 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 205.333-16 chr17 63143854 63144218 + 0.666667 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 177801 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 167.667 chr1 13715610 13716001 + 0.666667 NA intron (NM_012231, intron 2 of 9) intron (NM_012231, intron 2 of 9) 10950 NM_012231 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 161.667-85 chr8 65468220 65468702 + 0.666667 NA Intergenic L1MEd|LINE|L1 94205 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 246.667-7 chr11 22794871 22795478 + 0.666667 NA intron (NR_147085, intron 10 of 10) MER53|DNA|hAT 34205 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 138-98 chr7 24748773 24749153 + 0.666667 NA intron (NM_001127454, intron 1 of 8) LTR52|LTR|ERVL 8501 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 119.167-77 chr5 100443893 100444096 + 0.666667 NA Intergenic Intergenic -55740 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 124.333-10 chr10 32647151 32647422 + 0.666667 NA intron (NM_001321115, intron 21 of 43) AluSz|SINE|Alu 201146 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 114-14 chr10 50643050 50643377 + 0.666667 NA Intergenic AluJr4|SINE|Alu 18262 NR_126411 104355295 Hs.450493 NR_126411 SGMS1-AS1 - SGMS1 antisense RNA 1 ncRNA 191.667-56 chr8 49604719 49605180 + 0.666667 NA Intergenic LTR28B|LTR|ERV1 -92769 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 130.667-12 chr11 55017434 55017656 + 0.666667 NA Intergenic L1PA3|LINE|L1 -244610 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 144.167-77 chr8 130408456 130408865 + 0.666667 NA intron (NM_001362925, intron 1 of 29) MLT2B1|LTR|ERVL 35000 NM_001362924 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 182.667-24 chr15 96957687 96958040 + 0.666667 NA Intergenic GA-rich|Low_complexity|Low_complexity 174428 NR_158223 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 297.5-2 chr11 104166250 104166972 + 0.666667 NA Intergenic Intergenic -2464 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 116.667-80 chr4 30452223 30452405 + 0.666667 NA Intergenic Intergenic -268055 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 117.333-58 chr20 54874026 54874226 + 0.666667 NA Intergenic Intergenic 398533 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 292.667-6 chr19 46780059 46780687 + 0.666667 NA intron (NM_001145145, intron 3 of 6) AluSz6|SINE|Alu 4441 NM_001145145 6510 Hs.631582 NM_005628 ENSG00000105281 SLC1A5 AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC solute carrier family 1 member 5 protein-coding 249-21 chr8 129769517 129770059 + 0.666667 NA intron (NM_031415, intron 3 of 13) L1MA9|LINE|L1 16836 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 119.667-56 chr2 215507479 215507751 + 0.666667 NA Intergenic Intergenic 53908 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 118.333-31 chr14 60778258 60778619 + 0.666667 NA intron (NM_001177963, intron 1 of 6) HERV16-int|LTR|ERVL 43677 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 280.834-3 chr2 82614817 82615563 + 0.666667 NA Intergenic Intergenic -241613 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 116-72 chr5 32968834 32969146 + 0.666667 NA Intergenic Intergenic 21547 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 155.667-5 chr1 103408789 103409201 + 0.666667 NA Intergenic Intergenic 116516 NM_001347929 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 177.5-70 chr6 11382593 11383197 + 0.666667 NA promoter-TSS (NM_001142393) promoter-TSS (NM_001142393) -547 NM_001142393 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 145.833-35 chr18 69943444 69943921 + 0.666667 NA intron (NM_001303619, intron 1 of 4) intron (NM_001303619, intron 1 of 4) 4191 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 177.167-20 chr20 10971073 10971406 + 0.666667 NA Intergenic Intergenic -55305 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 166.333-11 chr10 126200804 126201100 + 0.666667 NA intron (NM_001288974, intron 3 of 18) intron (NM_001288974, intron 3 of 18) 187525 NM_001288975 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 117.333-109 chr8 82162838 82163231 + 0.666667 NA Intergenic Intergenic -320748 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 121.333-19 chr11 95642243 95642767 + 0.666667 NA Intergenic L1ME3A|LINE|L1 147277 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 174.667-34 chr2 130961282 130961705 + 0.666667 NA intron (NM_001367493, intron 4 of 13) L2a|LINE|L2 124579 NM_001367493 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 296.167-7 chr3 150811026 150811727 + 0.666667 NA Intergenic Intergenic -48207 NM_005067 6478 Hs.477959 NM_005067 ENSG00000181788 SIAH2 hSiah2 siah E3 ubiquitin protein ligase 2 protein-coding 190.833-27 chr20 34479498 34479859 + 0.666667 NA exon (NM_001257138, exon 17 of 24) exon (NM_001257138, exon 17 of 24) 13353 NR_030374 693229 NR_030374 ENSG00000207997 MIR644A MIR644|MIRN644|hsa-mir-644|hsa-mir-644a microRNA 644a ncRNA 251-29 chr8 81354556 81355046 + 0.666667 NA Intergenic Intergenic 74265 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 175.167-30 chr20 47638071 47638522 + 0.666667 NA intron (NM_181659, intron 13 of 22) AluSx3|SINE|Alu 136409 NM_181659 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 158.667-50 chr20 38797501 38797739 + 0.666667 NA Intergenic AluSx|SINE|Alu -8077 NM_001172735 26051 Hs.45719 NM_015568 ENSG00000101445 PPP1R16B ANKRD4|TIMAP protein phosphatase 1 regulatory subunit 16B protein-coding 143.667-10 chr1 168593542 168594154 + 0.666667 NA Intergenic L2a|LINE|L2 17243 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 232-2 chr1 81301616 81302246 + 0.666667 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -4261 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 119.667-95 chr8 52580836 52581094 + 0.666667 NA Intergenic Intergenic -15535 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 129.333-84 chr6 152553544 152553791 + 0.666667 NA intron (NM_182961, intron 3 of 145) intron (NM_182961, intron 3 of 145) 83184 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 115.333-27 chr14 27336864 27337213 + 0.666667 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -275550 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 117-24 chr13 78050273 78050549 + 0.666667 NA intron (NR_047028, intron 5 of 5) intron (NR_047028, intron 5 of 5) -4444 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 206-29 chr5 40260833 40261232 + 0.666667 NA Intergenic Intergenic 208741 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 116.833-11 chr11 21444164 21444511 + 0.666667 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) -748748 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 119-18 chr11 73364162 73364439 + 0.666667 NA intron (NM_014786, intron 17 of 20) intron (NM_014786, intron 17 of 20) -12099 NM_152222 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 120.667-71 chr20 56048413 56048748 + 0.666667 NA Intergenic AluSc|SINE|Alu -43061 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 167.667-9 chr10 61238439 61238796 + 0.666667 NA Intergenic Intergenic -214022 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 194.667-33 chr2 210649753 210650276 + 0.666667 NA intron (NR_163592, intron 17 of 27) intron (NR_163592, intron 17 of 27) 32443 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 122-98 chrX 63437172 63437371 + 0.666667 NA intron (NR_152612, intron 1 of 2) L1M2|LINE|L1 -85939 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 138-41 chr16 81171936 81172269 + 0.666667 NA intron (NM_001076780, intron 16 of 17) intron (NM_001076780, intron 16 of 17) 9229 NM_001278425 114780 Hs.413525 NM_052892 ENSG00000166473 PKD1L2 PC1L2 polycystin 1 like 2 (gene/pseudogene) protein-coding 157.167-19 chr12 45389399 45389826 + 0.666667 NA intron (NM_001025356, intron 11 of 19) intron (NM_001025356, intron 11 of 19) 96922 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 128.833-64 chr4 55607277 55607677 + 0.666667 NA intron (NR_120489, intron 4 of 8) intron (NR_120489, intron 4 of 8) -15232 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 119.667-28 chr17 77878691 77879071 + 0.666667 NA TTS (NR_028337) TTS (NR_028337) 5206 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 128-52 chr2 158501836 158502220 + 0.666667 NA intron (NM_001005476, intron 1 of 20) MamRTE1|LINE|RTE-BovB 45076 NM_003628 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 146.333-87 chr6 133013979 133014287 + 0.666667 NA Intergenic Intergenic -73947 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 162-9 chr1 226843663 226843911 + 0.666667 NA Intergenic L1ME2|LINE|L1 -26785 NM_012486 5664 Hs.25363 NM_000447 ENSG00000143801 PSEN2 AD3L|AD4|CMD1V|PS2|STM2 presenilin 2 protein-coding 254.167-2 chr12 26294418 26295307 + 0.666667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 99289 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 195.333-8 chr12 30001057 30001484 + 0.666667 NA Intergenic MIR|SINE|MIR -216511 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 164-68 chr7 20915867 20916150 + 0.666667 NA intron (NR_126381, intron 2 of 5) intron (NR_126381, intron 2 of 5) 80577 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 186.5-3 chr1 78944499 78944850 + 0.666667 NA intron (NM_022159, intron 3 of 14) intron (NM_022159, intron 3 of 14) 62056 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 189.667-51 chr9 5116596 5117285 + 0.666667 NA intron (NM_004972, intron 22 of 24) intron (NM_004972, intron 22 of 24) 68699 NM_007179 11172 Hs.632648 NM_007179 ENSG00000120210 INSL6 RIF1 insulin like 6 protein-coding 310-10 chr3 135877427 135878114 + 0.666667 NA Intergenic AluSz6|SINE|Alu -87958 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 206-7 chr13 67797401 67797977 + 0.666667 NA Intergenic Intergenic 425302 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 163-66 chr9 31901145 31901529 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -483266 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 132.667-63 chr3 97356294 97356516 + 0.666667 NA intron (NM_001080448, intron 5 of 17) MER1A|DNA|hAT-Charlie -83202 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 311.833-5 chr8 105988575 105989395 + 0.666667 NA intron (NR_125797, intron 1 of 4) MSTB|LTR|ERVL-MaLR 71518 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 142.833-23 chr16 13990795 13991208 + 0.666667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 25017 NR_110909 101927311 NR_110909 ENSG00000262097 LINC02185 - long intergenic non-protein coding RNA 2185 ncRNA 210.333-15 chr18 59822564 59823114 + 0.666667 NA Intergenic Intergenic -77157 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 124.333-2 chr1 93384660 93384963 + 0.666667 NA Intergenic Intergenic 38904 NM_001938 1810 Hs.348418 NM_001938 ENSG00000117505 DR1 NC2|NC2-BETA|NC2B|NCB2 down-regulator of transcription 1 protein-coding 131-47 chr4 112944012 112944307 + 0.666667 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) 83172 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 173.333-49 chr4 114981823 114982171 + 0.666667 NA intron (NM_022569, intron 2 of 13) MSTA|LTR|ERVL-MaLR 131623 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 159.5-44 chr6 12971086 12971478 + 0.666667 NA intron (NM_001322313, intron 1 of 12) intron (NM_001322313, intron 1 of 12) 13796 NM_001322312 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 156.333-10 chr10 70797555 70797836 + 0.666667 NA Intergenic AluSx|SINE|Alu -12276 NM_001318241 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 138.167-39 chr18 71704016 71704415 + 0.666667 NA Intergenic Intergenic 78011 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 152.833-39 chr21 14676806 14677154 + 0.666667 NA Intergenic Intergenic -33873 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 155.167-17 chr15 89655834 89656154 + 0.666667 NA promoter-TSS (NM_198525) promoter-TSS (NM_198525) -527 NM_198525 374654 Hs.513134 NM_198525 ENSG00000166813 KIF7 ACLS|AGBK|HLS2|JBTS12|UNQ340 kinesin family member 7 protein-coding 180.333-52 chr6 148940092 148940372 + 0.666667 NA intron (NM_005715, intron 2 of 7) AluJb|SINE|Alu 24452 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 172.333-42 chr2 185762775 185763214 + 0.666667 NA intron (NM_173651, intron 11 of 22) L2|LINE|L2 -22517 NR_110217 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 175.5-6 chr1 222886623 222887015 + 0.666667 NA intron (NM_032890, intron 1 of 9) intron (NM_032890, intron 1 of 9) -41605 NM_001369594 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 186-12 chr12 80888273 80888694 + 0.666667 NA intron (NR_136887, intron 1 of 5) intron (NR_136887, intron 1 of 5) 47350 NR_030349 693203 NR_030349 ENSG00000208022 MIR618 MIRN618|hsa-mir-618|mir-618 microRNA 618 ncRNA 145.833-21 chr12 25641679 25641970 + 0.666667 NA intron (NM_001352232, intron 1 of 10) intron (NM_001352232, intron 1 of 10) 6754 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 129.833-73 chr8 98232918 98233160 + 0.666667 NA intron (NR_135745, intron 4 of 11) AluSg|SINE|Alu 61196 NM_024759 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 140.167-43 chr3 29458665 29458959 + 0.666667 NA intron (NM_001003792, intron 2 of 13) intron (NM_001003792, intron 2 of 13) 177500 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 141.667-83 chr4 109104608 109105215 + 0.666667 NA intron (NM_198721, intron 3 of 36) L1MC5|LINE|L1 197747 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 225.667-18 chr2 193470480 193470877 + 0.666667 NA Intergenic MER52-int|LTR|ERV1 720833 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 146.667-81 chr6 142485780 142486148 + 0.666667 NA Intergenic AluSz|SINE|Alu 151872 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 127.333-103 chr7 11435683 11436032 + 0.666667 NA intron (NM_015204, intron 13 of 26) MER21C|LTR|ERVL 396341 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 148.667-40 chr2 183001428 183001798 + 0.666667 NA intron (NM_013436, intron 6 of 30) MIR|SINE|MIR 36844 NM_013436 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 211.667-38 chr7 18682595 18683090 + 0.666667 NA intron (NM_058176, intron 11 of 22) AluSx1|SINE|Alu 173572 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 152.833-74 chr9 29564843 29565132 + 0.666667 NA Intergenic Intergenic -351386 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 232.833-2 chr10 114548199 114548689 + 0.666667 NA intron (NM_001352440, intron 4 of 20) MIR|SINE|MIR -21531 NM_001352443 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 143.667-6 chr1 78453104 78453515 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR -37665 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 165.333-71 chr9 28256437 28256785 + 0.666667 NA intron (NM_152570, intron 5 of 6) L2a|LINE|L2 462694 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 160-42 chr2 23946992 23947364 + 0.666667 NA intron (NM_181713, intron 1 of 6) AluJr|SINE|Alu 6715 NM_181713 165324 Hs.591576 NM_181713 ENSG00000173960 UBXN2A UBXD4 UBX domain protein 2A protein-coding 120.667-78 chr3 71189462 71189705 + 0.666667 NA intron (NR_146142, intron 6 of 19) intron (NR_146142, intron 6 of 19) 55494 NM_001244814 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 147.167-62 chr8 108857940 108858543 + 0.666667 NA Intergenic L1M4b|LINE|L1 -70647 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 115-15 chr10 91831010 91831342 + 0.666667 NA exon (NM_025235, exon 11 of 27) exon (NM_025235, exon 11 of 27) 32750 NM_025235 80351 Hs.329327 NM_025235 ENSG00000107854 TNKS2 ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6 tankyrase 2 protein-coding 216-31 chr7 32907943 32908502 + 0.666667 NA Intergenic Intergenic -16462 NM_015483 25948 Hs.372541 NM_015483 ENSG00000170852 KBTBD2 BKLHD1 kelch repeat and BTB domain containing 2 protein-coding 172-33 chr18 9275472 9275940 + 0.666667 NA intron (NM_001204056, intron 10 of 11) intron (NM_001204056, intron 10 of 11) -59067 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 197.5-25 chr2 50800552 50800933 + 0.666667 NA intron (NM_001330093, intron 4 of 22) AluSq2|SINE|Alu -104480 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 159.667-59 chr3 62282164 62282836 + 0.666667 NA intron (NM_002841, intron 27 of 29) AluJr4|SINE|Alu 36447 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 274.5-8 chr20 244884 245448 + 0.666667 NA Intergenic AluSz6|SINE|Alu -12558 NM_207469 400830 Hs.516819 NM_207469 ENSG00000186458 DEFB132 BD-32|DEFB-32|DEFB32|HEL-75|KFLL827|UNQ827 defensin beta 132 protein-coding 163.833 chr1 54730345 54730823 + 0.666667 NA intron (NM_001291333, intron 6 of 7) intron (NM_001291333, intron 6 of 7) 14723 NM_004623 7268 Hs.412482 NM_004623 ENSG00000243725 TTC4 CNS1 tetratricopeptide repeat domain 4 protein-coding 147-55 chr3 128306313 128306674 + 0.666667 NA intron (NM_021937, intron 4 of 6) L1M5|LINE|L1 -152579 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 166.833-29 chr3 107947284 107947686 + 0.666667 NA Intergenic MLT1J|LTR|ERVL-MaLR 64280 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 124.333-50 chr2 178082161 178082438 + 0.666667 NA intron (NM_001077197, intron 2 of 20) MIR|SINE|MIR -9522 NM_016953 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 159.5-16 chr14 71631664 71631940 + 0.666667 NA intron (NM_001354286, intron 8 of 24) intron (NM_001354286, intron 8 of 24) 45504 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 143.333-34 chr2 80626076 80626364 + 0.666667 NA intron (NM_001320810, intron 12 of 12) MLT1J|LTR|ERVL-MaLR 312841 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 128-48 chr2 72273498 72273869 + 0.666667 NA intron (NR_135773, intron 19 of 21) L2c|LINE|L2 -125821 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 213.5-36 chr7 117815393 117815839 + 0.666667 NA intron (NM_001363351, intron 2 of 22) intron (NM_001363351, intron 2 of 22) 56604 NM_001363350 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 145-12 chr10 86834931 86835174 + 0.666667 NA intron (NM_004329, intron 1 of 12) intron (NM_004329, intron 1 of 12) 78413 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 252.167-20 chr9 115641116 115641505 + 0.666667 NA Intergenic L1PB4|LINE|L1 102929 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 193.333-5 chr1 160976851 160977170 + 0.666667 NA Intergenic AluJb|SINE|Alu -22201 NM_080878 142683 Hs.385631 NM_080878 ENSG00000158764 ITLN2 HL-2|HL2 intelectin 2 protein-coding 177.667-22 chr14 33665789 33666261 + 0.666667 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) -42912 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 124.333-90 chr6 139371778 139372116 + 0.666667 NA TTS (NM_001168388) TTS (NM_001168388) 2266 NM_001168389 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 144-16 chr13 25521185 25521478 + 0.666667 NA intron (NM_016529, intron 2 of 36) L1MA4|LINE|L1 52557 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 135.5-33 chr14 82306869 82307173 + 0.666667 NA Intergenic Intergenic -335611 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 182.333-6 chr10 25046827 25047150 + 0.666667 NA intron (NM_001270383, intron 2 of 5) intron (NM_001270383, intron 2 of 5) 15291 NM_001270383 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 179.333-3 chr1 199381697 199382191 + 0.666667 NA intron (NR_147896, intron 3 of 3) L1MB7|LINE|L1 233346 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 136.667-66 chr3 115100494 115100822 + 0.666667 NA promoter-TSS (NM_001348804) promoter-TSS (NM_001348804) 235 NR_046877 100874131 NR_046877 ENSG00000242767 ZBTB20-AS4 - ZBTB20 antisense RNA 4 ncRNA 137.667-97 chr8 130756929 130757333 + 0.666667 NA Intergenic Intergenic 283778 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 126-23 chr13 54395256 54395534 + 0.666667 NA Intergenic Intergenic -83347 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 200.333-12 chr15 100387398 100387816 + 0.666667 NA intron (NR_120374, intron 1 of 4) intron (NR_120374, intron 1 of 4) 14668 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 146.833-40 chr3 88744746 88745227 + 0.666667 NA Intergenic Intergenic -362635 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 115.333-10 chr1 221678804 221679055 + 0.666667 NA Intergenic Charlie1a|DNA|hAT-Charlie 57971 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 231-16 chr2 112059947 112060399 + 0.666667 NA intron (NM_001329914, intron 2 of 18) AluSx3|SINE|Alu 4904 NM_032824 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 121.667-56 chr2 186523333 186523603 + 0.666667 NA Intergenic Intergenic 37208 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 160.5-7 chr10 94153607 94154058 + 0.666667 NA intron (NM_001165979, intron 2 of 31) L1MB7|LINE|L1 -45038 NR_120615 101927049 Hs.144492 NR_120615 ENSG00000232913 PLCE1-AS2 - PLCE1 antisense RNA 2 ncRNA 182.333-77 chr9 85272574 85272971 + 0.666667 NA Intergenic Intergenic 469257 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 163-13 chr12 42586277 42586599 + 0.666667 NA intron (NM_153026, intron 1 of 7) FLAM_A|SINE|Alu 3308 NM_153026 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 125.333-83 chr3 151133927 151134240 + 0.666667 NA intron (NM_053002, intron 4 of 42) intron (NM_053002, intron 4 of 42) 47285 NM_053002 116931 Hs.744234 NM_053002 ENSG00000144893 MED12L NOPAR|TNRC11L|TRALP|TRALPUSH mediator complex subunit 12L protein-coding 147.833-3 chr1 245822549 245822853 + 0.666667 NA intron (NM_022743, intron 10 of 11) intron (NM_022743, intron 10 of 11) -588184 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 236.833-10 chr2 228666841 228667500 + 0.666667 NA Intergenic L2a|LINE|L2 -55775 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 138.167-61 chr5 75539560 75539876 + 0.666667 NA intron (NM_001345921, intron 1 of 13) AluJo|SINE|Alu -27737 NM_001130105 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 148 chr1 38564770 38565088 + 0.666667 NA Intergenic Intergenic 89733 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 125.333-20 chr10 73474992 73475388 + 0.666667 NA intron (NM_001142353, intron 3 of 13) L2a|LINE|L2 -20562 NR_132104 101929145 Hs.434502 NR_132103 ENSG00000221817 PPP3CB-AS1 USP54-AS1 PPP3CB antisense RNA 1 (head to head) ncRNA 134.333-22 chr12 9079656 9079969 + 0.666667 NA exon (NM_001347424, exon 24 of 36) exon (NM_001347424, exon 24 of 36) 14635 NR_026971 144571 Hs.592432 NR_026971 ENSG00000245105 A2M-AS1 - A2M antisense RNA 1 ncRNA 184.5-54 chr9 29537465 29537859 + 0.666667 NA Intergenic Intergenic -324061 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 145.833-37 chr2 20549725 20550122 + 0.666667 NA Intergenic Intergenic 42625 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 152.333-23 chr15 96477986 96478318 + 0.666667 NA Intergenic L1ME1|LINE|L1 144387 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 192-2 chr1 73975866 73976436 + 0.666667 NA Intergenic Intergenic 222025 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 182.834-6 chr7 97431844 97432418 + 0.666667 NA Intergenic Intergenic -299955 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 270.166 chr1 112176647 112177431 + 0.666667 NA Intergenic Intergenic 186503 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 168.667-6 chr11 8815764 8816070 + 0.666667 NA intron (NM_005418, intron 3 of 22) intron (NM_005418, intron 3 of 22) -4582 NM_139157 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 187.667-32 chr20 19876613 19877146 + 0.666667 NA Intergenic AluSx1|SINE|Alu -9642 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 129-47 chr2 230827766 230828069 + 0.666667 NA Intergenic Intergenic -36268 NM_001287240 81618 Hs.111577 NM_030926 ENSG00000135916 ITM2C BRI3|BRICD2C|E25|E25C|ITM3 integral membrane protein 2C protein-coding 128.667-7 chr1 107098300 107098550 + 0.666667 NA Intergenic AluSx1|SINE|Alu -41663 NM_014917 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 171.333-26 chr16 27101556 27102023 + 0.666667 NA Intergenic MIRb|SINE|MIR 34862 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 128.5-11 chr10 62961426 62961827 + 0.666667 NA Intergenic Intergenic -142459 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 120-4 chr1 98682801 98683059 + 0.666667 NA intron (NR_033716, intron 2 of 8) HAL1|LINE|L1 21209 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 131.833-54 chr5 68463432 68463733 + 0.666667 NA Intergenic L2b|LINE|L2 171005 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 167.333-22 chr12 117765642 117765935 + 0.666667 NA intron (NM_173598, intron 3 of 19) L2a|LINE|L2 203202 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 186.833-42 chr7 5193557 5193905 + 0.666667 NA intron (NM_001278299, intron 2 of 12) AluJr|SINE|Alu 3498 NM_015610 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 263-9 chr2 18070033 18070788 + 0.666667 NA Intergenic Intergenic 191743 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 173.333-23 chr14 71206832 71207275 + 0.666667 NA Intergenic Intergenic -113423 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 113.667-128 chr8 108411187 108411505 + 0.666667 NA Intergenic A-rich|Low_complexity|Low_complexity -32237 NM_001329493 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 177.5-42 chr2 141612668 141612991 + 0.666667 NA intron (NM_018557, intron 2 of 90) AluY|SINE|Alu 518872 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 183-33 chr20 39267612 39268103 + 0.666667 NA Intergenic MIRb|SINE|MIR -43109 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 164.667-19 chr12 38714078 38714393 + 0.666667 NA intron (NM_153634, intron 13 of 19) intron (NM_153634, intron 13 of 19) 191356 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 142.833-68 chr6 144704241 144704589 + 0.666667 NA intron (NM_007124, intron 52 of 73) intron (NM_007124, intron 52 of 73) 298760 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 123.5-41 chr19 47439762 47440061 + 0.666667 NA intron (NM_015063, intron 6 of 9) AluSx1|SINE|Alu -17678 NM_001346148 56917 Hs.380923 NM_020160 ENSG00000105419 MEIS3 MRG2 Meis homeobox 3 protein-coding 197.667-60 chr9 21410518 21411076 + 0.666667 NA TTS (NM_002170) TTS (NM_002170) 1680 NM_002170 3445 Hs.73890 NM_002170 ENSG00000120242 IFNA8 IFN-alphaB interferon alpha 8 protein-coding 227.334-16 chrX 79802873 79803568 + 0.666667 NA Intergenic L1MA1|LINE|L1 -211533 NM_001109879 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 145.333-78 chr7 12051543 12051883 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR -159581 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 150.667-13 chr10 95532918 95533276 + 0.666667 NA intron (NM_001290295, intron 1 of 24) LTR47A|LTR|ERVL 28274 NM_001290294 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 130.333-89 chr8 25146289 25146657 + 0.666667 NA Intergenic Intergenic -38216 NM_001322810 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 168.167-34 chr20 49190133 49190492 + 0.666667 NA intron (NM_001319135, intron 1 of 14) AluJb|SINE|Alu -1942 NM_004602 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 168.167-11 chr11 76352602 76353185 + 0.666667 NA intron (NM_004705, intron 4 of 4) L2c|LINE|L2 28072 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 134.5-28 chr14 44853023 44853501 + 0.666667 NA Intergenic AluSx|SINE|Alu -44013 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 164.333-57 chr5 31028879 31029163 + 0.666667 NA Intergenic Intergenic -164665 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 146.667-80 chr6 126951657 126952079 + 0.666667 NA Intergenic L2a|LINE|L2 -166803 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 127.667-21 chr12 22687378 22687600 + 0.666667 NA 3' UTR (NM_018638, exon 8 of 8) 3' UTR (NM_018638, exon 8 of 8) 62318 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 225-11 chr11 131511304 131511945 + 0.666667 NA intron (NM_001352003, intron 1 of 8) intron (NM_001352003, intron 1 of 8) 29243 NR_110140 101929653 Hs.559159 NR_110140 ENSG00000237654 LOC101929653 - uncharacterized LOC101929653 ncRNA 139.667-80 chr6 61408330 61408629 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr -165651 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 205.833-4 chr10 124942734 124943346 + 0.666667 NA exon (NM_017580, exon 1 of 9) exon (NM_017580, exon 1 of 9) 917 NM_017580 54764 Hs.595158 NM_017580 ENSG00000019995 ZRANB1 TRABID zinc finger RANBP2-type containing 1 protein-coding 213.667-21 chr2 216168367 216168806 + 0.666667 NA intron (NM_021141, intron 16 of 20) intron (NM_021141, intron 16 of 20) -48303 NR_037701 150967 Hs.56876 NM_001199924 ENSG00000260804 LINC01963 PKI55 long intergenic non-protein coding RNA 1963 ncRNA 166-3 chr1 167660634 167661028 + 0.666667 NA intron (NM_001322923, intron 1 of 5) intron (NM_001322923, intron 1 of 5) 30599 NM_001322924 92241 Hs.493867 NM_052862 ENSG00000198771 RCSD1 CAPZIP|MK2S4 RCSD domain containing 1 protein-coding 148.167-5 chr1 162409926 162410308 + 0.666667 NA intron (NM_053282, intron 1 of 3) MER31A|LTR|ERV1 2019 NM_053282 117157 Hs.350581 NM_053282 ENSG00000198574 SH2D1B EAT2 SH2 domain containing 1B protein-coding 187-20 chr2 75951363 75951950 + 0.666667 NA Intergenic L1MC4|LINE|L1 -240741 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 166-46 chr4 150230169 150230588 + 0.666667 NA intron (NM_001040260, intron 8 of 15) intron (NM_001040260, intron 8 of 15) 151933 NM_001040261 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 186.333-55 chr8 123825974 123826333 + 0.666667 NA Intergenic MamRep1527|LTR|LTR -25834 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 131.667-132 chr9 26161826 26162262 + 0.666667 NA Intergenic AluJb|SINE|Alu 95369 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 226.667-8 chr11 108882949 108883366 + 0.666667 NA intron (NM_004398, intron 16 of 17) MIR1_Amn|SINE|MIR 218088 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 151.667-80 chr7 71338307 71338633 + 0.666667 NA intron (NM_022479, intron 2 of 10) AluJb|SINE|Alu -30700 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 121-74 chr5 156712290 156712574 + 0.666667 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -137863 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 182-39 chr5 52430315 52430836 + 0.666667 NA Intergenic Intergenic -357341 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 199.667-64 chr9 109576861 109577380 + 0.666667 NA Intergenic L2c|LINE|L2 -63668 NM_001037293 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 220.333-5 chr12 76785276 76785736 + 0.666667 NA intron (NM_015336, intron 1 of 16) MER47C|DNA|TcMar-Tigger 21248 NM_001359626 23390 Hs.4014 NM_015336 ENSG00000186908 ZDHHC17 DHHC-17|HIP14|HIP3|HSPC294|HYPH zinc finger DHHC-type containing 17 protein-coding 186.333-21 chr14 59260329 59260675 + 0.666667 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) -2939 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 149.333-14 chr10 106670224 106670567 + 0.666667 NA intron (NM_001206569, intron 16 of 25) intron (NM_001206569, intron 16 of 25) 494311 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 226.333-38 chr7 126175913 126176372 + 0.666667 NA Intergenic MSTA|LTR|ERVL-MaLR 882042 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 174.333-60 chr7 85696405 85696797 + 0.666667 NA Intergenic MIR|SINE|MIR 275479 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 156.167-20 chr13 100804998 100805247 + 0.666667 NA intron (NR_047687, intron 2 of 7) intron (NR_047687, intron 2 of 7) 96797 NR_047687 100885778 Hs.602949 NR_047687 ENSG00000233009 NALCN-AS1 - NALCN antisense RNA 1 ncRNA 152-23 chr14 99924285 99924639 + 0.666667 NA intron (NM_004434, intron 17 of 21) MER44A|DNA|TcMar-Tigger -46960 NM_001330221 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 197.5-9 chr10 61614547 61614958 + 0.666667 NA Intergenic AluSx1|SINE|Alu -48177 NM_001366905 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 126.333-99 chr7 42471574 42471861 + 0.666667 NA Intergenic MLT2B3|LTR|ERVL -234508 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 116-12 chr10 100499554 100499882 + 0.666667 NA intron (NM_015490, intron 11 of 25) intron (NM_015490, intron 11 of 25) 20143 NM_015490 25956 Hs.18889 NM_015490 ENSG00000075826 SEC31B SEC31B-1|SEC31L2 SEC31 homolog B, COPII coat complex component protein-coding 231.167-35 chr8 129013861 129014732 + 0.666667 NA Intergenic L1PREC2|LINE|L1 -48295 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 150.5-83 chr8 136038888 136039375 + 0.666667 NA Intergenic Intergenic -491667 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 117.5-44 chr3 161807067 161807285 + 0.666667 NA Intergenic L2a|LINE|L2 310368 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 184-27 chr2 157157305 157157847 + 0.666667 NA Intergenic L1M6|LINE|L1 -100129 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 203.667-23 chr22 22676359 22676837 + 0.666667 NA Intergenic L1M2|LINE|L1 30286 NM_199127 91227 Hs.450000 NM_080839 ENSG00000100121 GGTLC2 GGTL4 gamma-glutamyltransferase light chain 2 protein-coding 201.667-23 chr4 4614349 4614812 + 0.666667 NA intron (NR_037888, intron 2 of 5) AluSz|SINE|Alu -49746 NR_145783 109623454 NR_145783 SNORD162 - small nucleolar RNA, C/D box 162 snoRNA 162.333-76 chr9 20750524 20751050 + 0.666667 NA intron (NM_017794, intron 7 of 45) intron (NM_017794, intron 7 of 45) 34682 NR_030166 574444 NR_030166 ENSG00000207609 MIR491 MIRN491|hsa-mir-491|mir-491 microRNA 491 ncRNA 142-27 chr12 61894821 61895190 + 0.666667 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 297834 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 129.167-25 chr14 81263102 81263327 + 0.666667 NA 3' UTR (NM_001366850, exon 8 of 8) 3' UTR (NM_001366850, exon 8 of 8) -41824 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 169.333-51 chr3 175496926 175497276 + 0.666667 NA intron (NM_207015, intron 9 of 13) AluJr4|SINE|Alu 127561 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 140.667-58 chr3 141399425 141399884 + 0.666667 NA intron (NM_001080412, intron 6 of 7) intron (NM_001080412, intron 6 of 7) -2695 NM_001350100 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 202.5-28 chrX 90045968 90046412 + 0.666667 NA Intergenic MER34B|LTR|ERV1 124282 NM_138960 90316 Hs.592220 NM_138960 ENSG00000153779 TGIF2LX TGIFLX TGFB induced factor homeobox 2 like X-linked protein-coding 161-74 chr8 42073637 42074018 + 0.666667 NA intron (NR_136589, intron 1 of 1) HAL1|LINE|L1 -21840 NM_001305878 7994 Hs.491577 NM_006766 ENSG00000083168 KAT6A MOZ|MRD32|MYST-3|MYST3|RUNXBP2|ZC2HC6A|ZNF220 lysine acetyltransferase 6A protein-coding 155.333-67 chr3 101682729 101683006 + 0.666667 NA exon (NM_000986, exon 4 of 6) exon (NM_000986, exon 4 of 6) 3851 NM_000986 6152 Hs.477028 NM_000986 ENSG00000114391 RPL24 HEL-S-310|L24 ribosomal protein L24 protein-coding 157.667-67 chr7 78733802 78734093 + 0.666667 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -275041 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 149.833-47 chr6 159496803 159497089 + 0.666667 NA Intergenic L1MEg|LINE|L1 113415 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 154-19 chr13 40364582 40364916 + 0.666667 NA intron (NR_024506, intron 5 of 5) intron (NR_024506, intron 5 of 5) 116257 NR_024506 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 lncFOXO1 long intergenic non-protein coding RNA 598 ncRNA 192-12 chr11 111994736 111995147 + 0.666667 NA intron (NM_001037954, intron 14 of 19) L2a|LINE|L2 17632 NM_033425 85458 Hs.655626 NM_033425 ENSG00000150764 DIXDC1 CCD1 DIX domain containing 1 protein-coding 159.167-39 chr3 85449063 85449303 + 0.666667 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -55876 NM_001256505 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 123-41 chr2 52982175 52982388 + 0.666667 NA Intergenic MSTB1|LTR|ERVL-MaLR -279666 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 124-100 chr8 127809174 127809516 + 0.666667 NA intron (NR_003367, intron 1 of 8) AluJr|SINE|Alu 13383 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 156.833-46 chr5 98279794 98280119 + 0.666667 NA Intergenic Intergenic -118717 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 128-70 chr5 6248720 6248945 + 0.666667 NA Intergenic L1MC1|LINE|L1 88460 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 188.333-52 chr6 63798237 63798776 + 0.666667 NA intron (NM_001292009, intron 37 of 43) intron (NM_001292009, intron 37 of 43) -8330 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 115.667-47 chr2 39733892 39734286 + 0.666667 NA Intergenic L2|LINE|L2 45169 NM_025264 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 176.667-51 chr3 115681679 115682079 + 0.666667 NA intron (NM_002045, intron 2 of 2) MIRb|SINE|MIR 58369 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 138.333-76 chr3 146313851 146314206 + 0.666667 NA Intergenic AluSz|SINE|Alu -62849 NM_001128306 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 201.667-28 chr5 45107611 45108109 + 0.666667 NA Intergenic L2c|LINE|L2 298913 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 188.167-10 chr13 80440729 80441138 + 0.666667 NA Intergenic L1M2|LINE|L1 -99807 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 170.667-3 chr1 190340547 190341019 + 0.666667 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 135227 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 203-23 chr2 173020555 173021113 + 0.666667 NA intron (NM_001282901, intron 17 of 24) intron (NM_001282901, intron 17 of 24) -55012 NM_016653 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 133.667-70 chr4 149753199 149753417 + 0.666667 NA intron (NM_001363507, intron 2 of 13) L1MEi|LINE|L1 62535 NM_001363509 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 209.667-34 chr7 8690914 8691498 + 0.666667 NA intron (NM_152745, intron 2 of 2) AluSp|SINE|Alu 257597 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 186.667-45 chr20 50401124 50401623 + 0.666667 NA Intergenic Intergenic -80031 NR_109950 101927586 Hs.637665 NR_109950 ENSG00000233077 LINC01271 - long intergenic non-protein coding RNA 1271 ncRNA 164-81 chr8 135343264 135343551 + 0.666667 NA Intergenic Intergenic 109276 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 185.333-52 chr5 165844159 165844676 + 0.666667 NA Intergenic Intergenic 1081953 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 228.167-22 chr7 42398157 42398632 + 0.666667 NA Intergenic Intergenic -161185 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 182.667-63 chr9 68795369 68795796 + 0.666667 NA intron (NM_003558, intron 2 of 15) intron (NM_003558, intron 2 of 15) 15517 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 159-18 chr14 20350862 20351239 + 0.666667 NA exon (NM_005484, exon 6 of 16) exon (NM_005484, exon 6 of 16) 7436 NM_005484 10038 Hs.409412 NM_005484 ENSG00000129484 PARP2 ADPRT2|ADPRTL2|ADPRTL3|ARTD2|PARP-2|pADPRT-2 poly(ADP-ribose) polymerase 2 protein-coding 137-97 chr8 124043725 124044081 + 0.666667 NA intron (NM_001039112, intron 20 of 40) intron (NM_001039112, intron 20 of 40) -3121 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 216.333-6 chr10 53570791 53571251 + 0.666667 NA Intergenic AluSx|SINE|Alu -799321 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 233.333-14 chr15 46793883 46794480 + 0.666667 NA Intergenic L1MA4|LINE|L1 -389908 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 129.333-73 chr5 147151604 147152018 + 0.666667 NA Intergenic L1MA9|LINE|L1 -70291 NM_001271900 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 127.333-60 chr20 25021962 25022191 + 0.666667 NA intron (NM_032501, intron 5 of 13) AluSx1|SINE|Alu 10630 NM_001252676 84532 Hs.529353 NM_032501 ENSG00000154930 ACSS1 ACAS2L|ACECS1|AceCS2L acyl-CoA synthetase short chain family member 1 protein-coding 135.167-59 chr20 45139622 45140053 + 0.666667 NA Intergenic Intergenic -15372 NM_080869 128488 Hs.352180 NM_080869 ENSG00000168703 WFDC12 C20orf122|SWAM2|WAP2|dJ211D12.4 WAP four-disulfide core domain 12 protein-coding 121-65 chr4 92658130 92658484 + 0.666667 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 353908 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 230.833-16 chr3 90412722 90413194 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 1305337 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 186.333-22 chr14 60207209 60207549 + 0.666667 NA Intergenic Intergenic -37515 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 176.333-7 chr10 14507544 14508033 + 0.666667 NA Intergenic Intergenic 24926 NM_001320741 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 186.667-46 chr20 51956208 51956613 + 0.666667 NA Intergenic Intergenic -93497 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 125.667-87 chr4 63828420 63828620 + 0.666667 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 580930 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 118.5-90 chr7 48131296 48131781 + 0.666667 NA Intergenic ERV24_Prim-int|LTR|ERV1 -39920 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 134.833-59 chr7 98145408 98145681 + 0.666667 NA intron (NM_014916, intron 3 of 13) L1M5|LINE|L1 38682 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 159.333-21 chr11 108069953 108070287 + 0.666667 NA exon (NM_003478, exon 8 of 19) exon (NM_003478, exon 8 of 19) -51447 NM_000019 38 Hs.232375 NM_000019 ENSG00000075239 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 179-36 chr3 144641052 144641675 + 0.666667 NA Intergenic Intergenic 668282 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 198.333-34 chr5 32549228 32549739 + 0.666667 NA Intergenic L1MB7|LINE|L1 -36074 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 regulator of transcription protein-coding 159.167-37 chr22 50336101 50336373 + 0.666667 NA Intergenic AluY|SINE|Alu -7090 NM_001351643 9701 Hs.449098 NM_014678 ENSG00000100239 PPP6R2 KIAA0685|PP6R2|SAP190|SAPS2 protein phosphatase 6 regulatory subunit 2 protein-coding 193.333-27 chr2 48172404 48172952 + 0.666667 NA Intergenic L1ME4b|LINE|L1 -142004 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 152.5-26 chr2 104049035 104049457 + 0.666667 NA Intergenic Intergenic 359086 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 144.167-75 chr8 121586301 121586911 + 0.666667 NA Intergenic Intergenic -52740 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 149.667-2 chr1 97639956 97640287 + 0.666667 NA intron (NM_000110, intron 8 of 22) intron (NM_000110, intron 8 of 22) -156800 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 175.667-16 chr13 35204205 35204700 + 0.666667 NA intron (NM_015678, intron 31 of 57) THE1A|LTR|ERVL-MaLR 262165 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 118.833-76 chrX 132019885 132020104 + 0.666667 NA Intergenic Intergenic -3308 NM_001042453 51765 Hs.444247 NM_016542 ENSG00000134602 STK26 MASK|MST4 serine/threonine kinase 26 protein-coding 136.667-113 chr9 77236168 77236591 + 0.666667 NA intron (NM_001018038, intron 17 of 68) L1M4|LINE|L1 -58462 NR_026668 100286938 Hs.662256 NR_026668 ENSG00000232998 VPS13A-AS1 - VPS13A antisense RNA 1 ncRNA 116.333-34 chr12 75751459 75751718 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -239979 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 165.167-7 chr11 108399711 108400163 + 0.666667 NA intron (NM_001330368, intron 4 of 6) ERVL-E-int|LTR|ERVL 67592 NM_001351110 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 141.5-40 chr18 60199458 60199776 + 0.666667 NA Intergenic Intergenic 173158 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 163.333-29 chr15 59961591 59961915 + 0.666667 NA Intergenic L1M3|LINE|L1 -42558 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 158-27 chr2 207520077 207520513 + 0.666667 NA Intergenic AluSx|SINE|Alu -9667 NR_163947 148.833-5 chr10 46018587 46019074 + 0.666667 NA intron (NM_001145263, intron 1 of 9) intron (NM_001145263, intron 1 of 9) 707 NM_001145262 8031 Hs.643658 NM_005437 ENSG00000266412 NCOA4 ARA70|ELE1|PTC3|RFG nuclear receptor coactivator 4 protein-coding 141.333-28 chr14 30167318 30167695 + 0.666667 NA Intergenic MIR|SINE|MIR -239659 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 129-9 chr10 22256776 22257091 + 0.666667 NA non-coding (NR_038921, exon 1 of 1) non-coding (NR_038921, exon 1 of 1) 4861 NR_038921 100130992 Hs.48501 NR_038921 LOC100130992 - uncharacterized LOC100130992 ncRNA 117.333-11 chr1 224992600 224992904 + 0.666667 NA intron (NM_001349911, intron 8 of 10) L1MA7|LINE|L1 63077 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 144.333-50 chr2 155816325 155816678 + 0.666667 NA Intergenic L1PA15-16|LINE|L1 438430 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 137.833-3 chr10 23974137 23974459 + 0.666667 NA intron (NM_001098500, intron 1 of 18) MIRc|SINE|MIR -234493 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 114.667-132 chr9 8832200 8832501 + 0.666667 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) -25668 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 148.333-56 chr20 50950139 50950650 + 0.666667 NA intron (NM_003859, intron 2 of 8) intron (NM_003859, intron 2 of 8) 8170 NM_001317036 8813 Hs.654951 NM_003859 ENSG00000000419 DPM1 CDGIE|MPDS dolichyl-phosphate mannosyltransferase subunit 1, catalytic protein-coding 159.333-6 chr1 220029272 220029619 + 0.666667 NA intron (NM_004446, intron 6 of 31) intron (NM_004446, intron 6 of 31) 17060 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 116.667-21 chr12 22356076 22356297 + 0.666667 NA Intergenic Intergenic -21472 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 200.333 chr1 60486917 60487301 + 0.666667 NA Intergenic L1MB7|LINE|L1 135576 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 164-65 chr7 4063874 4064276 + 0.666667 NA intron (NM_152744, intron 19 of 44) L1MA4A|LINE|L1 -65610 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 211-3 chr1 150052261 150052617 + 0.666667 NA Intergenic L1PREC2|LINE|L1 -14943 NM_001279353 11311 Hs.443750 NM_007259 ENSG00000136631 VPS45 H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A vacuolar protein sorting 45 homolog protein-coding 128.167-36 chr18 7935037 7935472 + 0.666667 NA intron (NM_002845, intron 5 of 30) Eulor9B|DNA|DNA 367938 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 238.5-18 chr21 21122579 21122980 + 0.666667 NA intron (NM_001352595, intron 1 of 14) MLT1H|LTR|ERVL-MaLR -24383 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 123.833-35 chr20 52094906 52095151 + 0.666667 NA intron (NM_199427, intron 7 of 8) intron (NM_199427, intron 7 of 8) 10456 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 184.5-34 chr3 134410408 134410857 + 0.666667 NA Intergenic Tigger17a|DNA|TcMar-Tigger -27195 NR_039951 100616281 NR_039951 ENSG00000284561 MIR4788 - microRNA 4788 ncRNA 130.333-10 chr10 15066911 15067146 + 0.666667 NA intron (NM_018324, intron 7 of 8) L1MA7|LINE|L1 21748 NR_144471 108949267 Hs.723069 NR_144471 ACBD7-DCLRE1CP1 - ACBD7-DCLRE1CP1 readthrough ncRNA 170-42 chr20 7822406 7822909 + 0.666667 NA Intergenic L2a|LINE|L2 117801 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 135-40 chr2 101265649 101265934 + 0.666667 NA intron (NM_017546, intron 4 of 6) intron (NM_017546, intron 4 of 6) 7258 NR_003070 692205 Hs.656503 NR_003070 ENSG00000212283 SNORD89 HBII-289 small nucleolar RNA, C/D box 89 snoRNA 161.167-59 chr8 142946712 142947104 + 0.666667 NA Intergenic Intergenic -29065 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 237-8 chr12 50686025 50686558 + 0.666667 NA intron (NM_173602, intron 11 of 37) intron (NM_173602, intron 11 of 37) -77810 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 113.167-71 chr7 30176491 30176717 + 0.666667 NA Intergenic MLT1F2|LTR|ERVL-MaLR 41618 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 179.833-31 chr7 24087032 24087551 + 0.666667 NA Intergenic Intergenic -196899 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 127.667-25 chr14 66672604 66672880 + 0.666667 NA intron (NM_001024218, intron 1 of 21) L1MCa|LINE|L1 165335 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 150.334-8 chr6 158326040 158326656 + 0.666667 NA intron (NM_020245, intron 1 of 13) HAL1|LINE|L1 3366 NR_145798 109623462 NR_145798 SNORA116 - small nucleolar RNA, H/ACA box 116 snoRNA 150-26 chr15 69761995 69762262 + 0.666667 NA Intergenic MIRb|SINE|MIR -73106 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 144.5-90 chr8 124024527 124025098 + 0.666667 NA intron (NM_001039112, intron 18 of 40) L1PB3|LINE|L1 15970 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 187.667-48 chr7 27493506 27493917 + 0.666667 NA Intergenic Intergenic -122263 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 187.833-24 chr3 83975296 83975629 + 0.666667 NA Intergenic Intergenic 894113 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 160.667-81 chr9 68454271 68454624 + 0.666667 NA intron (NM_021965, intron 6 of 10) intron (NM_021965, intron 6 of 10) 86420 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 156.5-51 chr2 208374944 208375505 + 0.666667 NA intron (NM_001309516, intron 1 of 12) intron (NM_001309516, intron 1 of 12) 15532 NM_001309516 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 159.333-37 chr2 74790459 74790994 + 0.666667 NA Intergenic AluSx1|SINE|Alu -41929 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 119.333-14 chr10 97046721 97046919 + 0.666667 NA intron (NM_003061, intron 17 of 36) intron (NM_003061, intron 17 of 36) -55936 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 213.667-9 chr14 44628842 44629290 + 0.666667 NA Intergenic L1MA10|LINE|L1 121657 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 186.667-41 chr2 158416011 158416343 + 0.666667 NA intron (NM_138803, intron 1 of 13) MSTA-int|LTR|ERVL-MaLR 40576 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 219.333-23 chr20 17911383 17912046 + 0.666667 NA Intergenic Intergenic 51232 NR_003045 692086 Hs.680747 NR_003045 ENSG00000212232 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 169.833-36 chr8 63995860 63996365 + 0.666667 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 226682 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 154.333-60 chr5 73755232 73755596 + 0.666667 NA intron (NM_001177693, intron 4 of 35) Tigger12|DNA|TcMar-Tigger -58132 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 164.167-32 chr2 71693747 71694113 + 0.666667 NA Intergenic Intergenic 227231 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 259.5-3 chr12 15899508 15900174 + 0.666667 NA intron (NM_007178, intron 7 of 9) intron (NM_007178, intron 7 of 9) -11491 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 127.167 chr1 17627480 17627935 + 0.666667 NA intron (NR_137287, intron 15 of 29) intron (NR_137287, intron 15 of 29) 9394 NM_001319838 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 179-52 chr8 85322029 85322578 + 0.666667 NA Intergenic L2a|LINE|L2 19411 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 172.333-21 chr14 39744175 39744542 + 0.666667 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -311858 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 237.667-12 chr5 82599721 82600439 + 0.666667 NA Intergenic Intergenic -240075 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 169-48 chr6 37658053 37658552 + 0.666667 NA exon (NM_153487, exon 3 of 17) exon (NM_153487, exon 3 of 17) 39581 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 191-53 chr8 131932503 131932844 + 0.666667 NA intron (NM_001323557, intron 1 of 22) intron (NM_001323557, intron 1 of 22) 15900 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 180-8 chr11 108580388 108580770 + 0.666667 NA intron (NM_015065, intron 1 of 5) L1MA5A|LINE|L1 13189 NM_001308019 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 184.333-36 chr3 54645620 54645958 + 0.666667 NA intron (NM_018398, intron 11 of 37) intron (NM_018398, intron 11 of 37) -5932 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 169-8 chr11 46047884 46048239 + 0.666667 NA intron (NR_147890, intron 5 of 18) L1MB8|LINE|L1 72758 NM_001352028 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 167.333-17 chr11 42655990 42656442 + 0.666667 NA Intergenic Intergenic -402526 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 136.667-28 chr15 84683367 84683707 + 0.666667 NA intron (NM_001271921, intron 2 of 4) intron (NM_001271921, intron 2 of 4) -25338 NM_021077 4828 Hs.386470 NM_021077 ENSG00000197696 NMB - neuromedin B protein-coding 214.333-45 chr8 132003308 132003777 + 0.666667 NA intron (NR_136616, intron 23 of 23) intron (NR_136616, intron 23 of 23) 55840 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 188.5-40 chr3 129813795 129814262 + 0.666667 NA intron (NM_001349271, intron 2 of 4) intron (NM_001349271, intron 2 of 4) -19416 NM_001349273 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 148.5-33 chr18 74920917 74921528 + 0.666667 NA TTS (NM_001146189) TTS (NM_001146189) 284291 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 141.667-82 chr4 87760445 87760877 + 0.666667 NA Intergenic Intergenic -38893 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 143-45 chr3 20227467 20227787 + 0.666667 NA Intergenic Arthur1B|DNA|hAT-Tip100 -41394 NM_001012411 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 136.333-43 chr2 38855890 38856229 + 0.666667 NA intron (NM_001329963, intron 7 of 23) AluSz6|SINE|Alu 19875 NM_001329963 90957 Hs.468226 NM_198963 ENSG00000163214 DHX57 DDX57 DExH-box helicase 57 protein-coding 143.667-84 chr5 3180452 3180801 + 0.666667 NA intron (NR_104617, intron 1 of 1) intron (NR_104617, intron 1 of 1) 2791 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 177-16 chr14 41851207 41851682 + 0.666667 NA intron (NM_001330106, intron 2 of 4) intron (NM_001330106, intron 2 of 4) 244588 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 134.5-41 chr2 33064019 33064309 + 0.666667 NA intron (NM_206943, intron 3 of 33) L1ME2z|LINE|L1 -70433 NM_001166264 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 151.833-30 chr2 152757189 152757767 + 0.666667 NA intron (NR_146431, intron 3 of 3) intron (NR_146431, intron 3 of 3) 38841 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 139-13 chr14 38792242 38792495 + 0.666667 NA intron (NR_039982, intron 4 of 4) intron (NR_039982, intron 4 of 4) -90228 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 227.333-28 chr4 69148548 69148937 + 0.666667 NA Intergenic Intergenic -33358 NR_136191 105377267 Hs.654304 NR_136191 ENSG00000250696 LOC105377267 - uncharacterized LOC105377267 ncRNA 205.667-46 chr5 26699685 26700036 + 0.666667 NA Intergenic Intergenic 338726 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 196-67 chr9 77228324 77228793 + 0.666667 NA intron (NM_001018038, intron 17 of 68) intron (NM_001018038, intron 17 of 68) -50641 NR_026668 100286938 Hs.662256 NR_026668 ENSG00000232998 VPS13A-AS1 - VPS13A antisense RNA 1 ncRNA 150-27 chr15 86325762 86326127 + 0.666667 NA intron (NM_152336, intron 17 of 24) intron (NM_152336, intron 17 of 24) -8976 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 125.5-5 chr10 21549648 21550088 + 0.666667 NA intron (NM_001195626, intron 3 of 22) AluSx|SINE|Alu 15696 NM_001195628 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 158.667-24 chr13 24167359 24167740 + 0.666667 NA intron (NM_153023, intron 1 of 11) intron (NM_153023, intron 1 of 11) 5133 NR_031753 100313842 NR_031753 ENSG00000252695 MIR2276 - microRNA 2276 ncRNA 118.667-71 chr21 43033844 43034121 + 0.666667 NA TTS (NM_001320694) TTS (NM_001320694) 34422 NM_001321072 875 Hs.533013 NM_000071 ENSG00000160200 CBS CBSL|HIP4 cystathionine-beta-synthase protein-coding 127.333-9 chr1 238304720 238305073 + 0.666667 NA Intergenic MSTB-int|LTR|ERVL-MaLR 181121 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 250.667-5 chr3 60480689 60481139 + 0.666667 NA intron (NM_001320900, intron 6 of 9) THE1D-int|LTR|ERVL-MaLR 136956 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 256-11 chr4 58103826 58104247 + 0.666667 NA Intergenic LTR16B2|LTR|ERVL 432292 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 124.333-61 chr3 77564234 77564442 + 0.666667 NA intron (NM_001290039, intron 12 of 26) intron (NM_001290039, intron 12 of 26) 466326 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 204.333-23 chr15 57098782 57099424 + 0.666667 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -120327 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 114.333-95 chr4 79547442 79547633 + 0.666667 NA intron (NR_038826, intron 3 of 3) LTR79|LTR|ERVL 54944 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 121.667-30 chr15 83772244 83772520 + 0.666667 NA intron (NM_207517, intron 3 of 29) L1ME4a|LINE|L1 118259 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 122.667-91 chr6 124103394 124103604 + 0.666667 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) -179506 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 114.667-35 chr16 80835693 80836108 + 0.666667 NA intron (NR_131948, intron 2 of 2) THE1A|LTR|ERVL-MaLR -31302 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 262.667-10 chr14 48782547 48783104 + 0.666667 NA Intergenic L2|LINE|L2 803555 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 203 chr1 67340086 67340498 + 0.666667 NA intron (NM_001319233, intron 9 of 15) intron (NM_001319233, intron 9 of 15) 32928 NR_047583 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 125.667-42 chr17 28501872 28502241 + 0.666667 NA Intergenic Intergenic -4292 NM_001369369 8456 Hs.58611 NM_003593 ENSG00000109101 FOXN1 FKHL20|RONU|WHN forkhead box N1 protein-coding 330.667-6 chr16 53194261 53194872 + 0.666667 NA intron (NM_001352127, intron 2 of 38) AluJb|SINE|Alu -13399 NM_001352157 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 284.5-11 chr4 97061872 97062298 + 0.666667 NA Intergenic Intergenic -304841 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 145.333-100 chr9 25012098 25012393 + 0.666667 NA Intergenic L1MC3|LINE|L1 -466348 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 175.333-46 chr4 64413771 64414163 + 0.666667 NA Intergenic L1MC2|LINE|L1 -4507 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 132.333-5 chr1 110351974 110352329 + 0.666667 NA Intergenic Intergenic 12828 NM_001201545 64783 Hs.435947 NM_022768 ENSG00000162775 RBM15 OTT|OTT1|SPEN RNA binding motif protein 15 protein-coding 174-40 chr3 152708885 152709396 + 0.666667 NA Intergenic Intergenic -125991 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 204.667-2 chr1 115968736 115969175 + 0.666667 NA intron (NR_125970, intron 1 of 4) intron (NR_125970, intron 1 of 4) -7558 NM_018420 55356 Hs.125482 NM_018420 ENSG00000163393 SLC22A15 FLIPT1|PRO34686 solute carrier family 22 member 15 protein-coding 190.667-6 chr10 70666418 70666911 + 0.666667 NA Intergenic MIRb|SINE|MIR -5842 NM_080722 140766 Hs.352156 NM_080722 ENSG00000138316 ADAMTS14 - ADAM metallopeptidase with thrombospondin type 1 motif 14 protein-coding 145.833-42 chr2 217613331 217613637 + 0.666667 NA intron (NR_026597, intron 1 of 12) intron (NR_026597, intron 1 of 12) 143109 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 229.833-5 chr11 100578036 100578514 + 0.666667 NA Intergenic Intergenic -109013 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 144.833-66 chr6 148022036 148022453 + 0.666667 NA Intergenic MER41D|LTR|ERV1 -250084 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 166-58 chr7 1344996 1345279 + 0.666667 NA Intergenic Intergenic 112265 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 142.833-30 chr17 53835190 53835455 + 0.666667 NA Intergenic L1PA13|LINE|L1 12395 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 256.5-21 chr3 28131120 28131564 + 0.666667 NA Intergenic L2a|LINE|L2 -110277 NR_138585 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 121-57 chr22 24369055 24369265 + 0.666667 NA intron (NM_015330, intron 13 of 16) intron (NM_015330, intron 13 of 16) 27052 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 160.167-17 chr15 96128625 96129222 + 0.666667 NA intron (NR_125738, intron 4 of 4) intron (NR_125738, intron 4 of 4) -1082 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 199.167-23 chr3 29513673 29514042 + 0.666667 NA intron (NM_001003792, intron 3 of 13) intron (NM_001003792, intron 3 of 13) 232545 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 140-39 chr2 123275653 123276199 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -202445 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 134.333-109 chr9 132686020 132686293 + 0.666667 NA intron (NR_133925, intron 4 of 5) MIR|SINE|MIR 15692 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 227.333-5 chr10 53817633 53818244 + 0.666667 NA intron (NM_001354429, intron 33 of 36) intron (NM_001354429, intron 33 of 36) -668292 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 260-14 chr2 201991356 201991898 + 0.666667 NA Intergenic Intergenic -42960 NM_003507 8324 Hs.173859 NM_003507 ENSG00000155760 FZD7 FzE3 frizzled class receptor 7 protein-coding 241.333-26 chr7 41110588 41111036 + 0.666667 NA intron (NR_110832, intron 2 of 5) intron (NR_110832, intron 2 of 5) 9208 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 153-54 chr8 88164407 88164688 + 0.666667 NA intron (NM_005941, intron 4 of 9) intron (NM_005941, intron 4 of 9) 162936 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 134.833-67 chr8 123307673 123308073 + 0.666667 NA Intergenic L1MB3|LINE|L1 -32332 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 146.667-7 chr1 194965738 194966053 + 0.666667 NA Intergenic Intergenic 1122820 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 143.5-24 chr14 56951061 56951330 + 0.666667 NA Intergenic Intergenic 138037 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 154.667-60 chr6 116142367 116142753 + 0.666667 NA intron (NM_152729, intron 6 of 11) intron (NM_152729, intron 6 of 11) -16428 NM_000493 1300 Hs.520339 NM_000493 ENSG00000123500 COL10A1 - collagen type X alpha 1 chain protein-coding 136.5-82 chr6 117795998 117796237 + 0.666667 NA Intergenic Intergenic -111147 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 155-41 chr2 204121461 204121730 + 0.666667 NA Intergenic MamTip2|DNA|hAT-Tip100 184847 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 145.333-33 chr16 19869412 19869766 + 0.666667 NA intron (NM_016235, intron 2 of 3) intron (NM_016235, intron 2 of 3) 15259 NM_016235 51704 Hs.148685 NM_016235 ENSG00000167191 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor class C group 5 member B protein-coding 196.333-4 chr11 109579836 109580178 + 0.666667 NA Intergenic Intergenic 157817 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 117-46 chr18 22456886 22457077 + 0.666667 NA Intergenic Intergenic -39066 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 216-17 chr2 68874853 68875448 + 0.666667 NA Intergenic AluSg|SINE|Alu -3753 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 176-43 chr7 92867948 92868333 + 0.666667 NA intron (NR_110087, intron 2 of 2) intron (NR_110087, intron 2 of 2) -31513 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 198.667-49 chr6 42618237 42618793 + 0.666667 NA intron (NM_001363705, intron 11 of 46) intron (NM_001363705, intron 11 of 46) 54486 NM_001184801 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 144-81 chrX 95884238 95884491 + 0.666667 NA Intergenic Intergenic 453538 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 182.333-54 chr5 38156365 38156697 + 0.666667 NA intron (NR_147009, intron 2 of 2) MLT1D|LTR|ERVL-MaLR 8051 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 143.667-99 chr7 123227132 123227446 + 0.666667 NA Intergenic Intergenic -27318 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 181.833-40 chr5 22587784 22588124 + 0.666667 NA intron (NM_004061, intron 1 of 14) (AT)n|Simple_repeat|Simple_repeat 265390 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 180.5-16 chr14 39109973 39110246 + 0.666667 NA Intergenic Intergenic -4175 NM_003616 8487 Hs.652307 NM_003616 ENSG00000092208 GEMIN2 SIP1|SIP1-delta gem nuclear organelle associated protein 2 protein-coding 137.5-4 chr1 67013934 67014471 + 0.666667 NA intron (NM_015139, intron 10 of 11) LTR49-int|LTR|ERV1 39946 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 158-17 chr13 94311176 94311606 + 0.666667 NA intron (NM_005708, intron 6 of 8) AluSz|SINE|Alu -123400 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 159.833-20 chr14 62108627 62108992 + 0.666667 NA 3' UTR (NM_001367650, exon 7 of 7) 3' UTR (NM_001367650, exon 7 of 7) -8548 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 137-78 chr5 26668616 26668942 + 0.666667 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 369807 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 119.333-11 chr10 51895227 51895499 + 0.666667 NA intron (NM_001098512, intron 4 of 17) MER115|DNA|hAT-Tip100 -195768 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 194.667-12 chr11 5426283 5426620 + 0.666667 NA intron (NM_001005567, intron 1 of 4) L1MC3|LINE|L1 4340 NM_001004757 390061 Hs.528592 NM_001004757 ENSG00000167360 OR51Q1 - olfactory receptor family 51 subfamily Q member 1 (gene/pseudogene) protein-coding 191-5 chr11 104056420 104056776 + 0.666667 NA intron (NM_025208, intron 1 of 6) MLT1C|LTR|ERVL-MaLR 19958 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 170-77 chr8 30392264 30392601 + 0.666667 NA intron (NM_001008710, intron 1 of 8) intron (NM_001008710, intron 1 of 8) -7031 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 191.333-14 chr18 21044051 21044360 + 0.666667 NA intron (NM_005406, intron 5 of 32) intron (NM_005406, intron 5 of 32) 67608 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 114.667-85 chr3 119611423 119611608 + 0.666667 NA intron (NM_015900, intron 4 of 10) L1PA17|LINE|L1 11244 NM_001293225 51365 Hs.437451 NM_015900 ENSG00000144837 PLA1A PS-PLA1|PSPLA1 phospholipase A1 member A protein-coding 183.667-76 chr8 16432520 16432921 + 0.666667 NA Intergenic Intergenic -239929 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 126.5-56 chr3 13592359 13592658 + 0.666667 NA intron (NM_001004019, intron 2 of 17) L1ME3|LINE|L1 23768 NM_001165035 2199 Hs.198862 NM_001998 ENSG00000163520 FBLN2 - fibulin 2 protein-coding 143.167-73 chr6 142249495 142249920 + 0.666667 NA Intergenic Intergenic -52212 NM_001032394 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 137.667-34 chr15 84782348 84782684 + 0.666667 NA intron (NM_014630, intron 3 of 10) intron (NM_014630, intron 3 of 10) 33924 NM_014630 9640 Hs.79347 NM_014630 ENSG00000166716 ZNF592 CAMOS|SCAR5 zinc finger protein 592 protein-coding 163.667-47 chr3 4850039 4850625 + 0.666667 NA Intergenic Intergenic 56169 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 147.167-29 chr2 51906894 51907125 + 0.666667 NA intron (NR_135237, intron 7 of 10) L2c|LINE|L2 -463639 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 121.667-4 chr1 118118360 118118675 + 0.666667 NA intron (NM_206996, intron 3 of 48) intron (NM_206996, intron 3 of 48) 66711 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 130-50 chr2 81332782 81333059 + 0.666667 NA Intergenic L1ME1|LINE|L1 134026 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 141.333-41 chr17 49214589 49215082 + 0.666667 NA intron (NM_016428, intron 1 of 7) L2b|LINE|L2 4128 NM_016428 51225 Hs.130719 NM_016428 ENSG00000108798 ABI3 NESH|SSH3BP3 ABI family member 3 protein-coding 120.5-73 chr5 163027469 163027974 + 0.666667 NA Intergenic AluSc|SINE|Alu -409850 NM_001364023 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 141.833 chr1 107241607 107241866 + 0.666667 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 93667 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 121.667-88 chr7 69866711 69866919 + 0.666667 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 268340 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 160 chr1 23787127 23787427 + 0.666667 NA exon (NM_020362, exon 6 of 6) exon (NM_020362, exon 6 of 6) -3868 NM_007260 11313 Hs.533479 NM_007260 ENSG00000011009 LYPLA2 APT-2|APT2|DJ886K2.4 lysophospholipase 2 protein-coding 185.167-23 chr2 235434317 235434648 + 0.666667 NA Intergenic AluJb|SINE|Alu -59561 NM_014914 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 218-19 chr17 45209768 45210151 + 0.666667 NA intron (NR_147507, intron 2 of 2) AluSg4|SINE|Alu 11806 NR_147507 339192 Hs.560498 NR_147507 ENSG00000267121 LOC339192 - uncharacterized LOC339192 ncRNA 133.833-61 chr5 68458202 68458624 + 0.666667 NA Intergenic MER110A|LTR|ERV1 165836 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 148-2 chr1 44049485 44049803 + 0.666667 NA Intergenic AluJb|SINE|Alu -18182 NM_001328626 6536 Hs.442590 NM_006934 ENSG00000196517 SLC6A9 GCENSG|GLYT1 solute carrier family 6 member 9 protein-coding 143.333-91 chr8 126052958 126053248 + 0.666667 NA Intergenic L1MEc|LINE|L1 -101906 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 215.5-6 chr10 56879393 56879808 + 0.666667 NA Intergenic Intergenic 424959 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 174.833-6 chr10 118695855 118696296 + 0.666667 NA intron (NM_153810, intron 5 of 8) intron (NM_153810, intron 5 of 8) 58895 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 251.5-27 chr8 132433391 132434186 + 0.666667 NA intron (NM_004519, intron 1 of 14) AluSx|SINE|Alu 13474 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 156.667-55 chr2 174281308 174281751 + 0.666667 NA Intergenic L2|LINE|L2 -32997 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 153.667-32 chr18 75980279 75980725 + 0.666667 NA Intergenic Intergenic -142496 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 202.666-3 chr11 36408096 36408677 + 0.666667 NA intron (NM_001160167, intron 3 of 8) intron (NM_001160167, intron 3 of 8) 7389 NM_001160169 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 131.333-14 chr11 12043791 12044169 + 0.666667 NA intron (NR_135109, intron 1 of 1) intron (NR_135109, intron 1 of 1) 13105 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 163.667-63 chr5 86712380 86712807 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR -34225 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 128.667-55 chr17 67187402 67187649 + 0.666667 NA intron (NM_001330447, intron 12 of 32) L4_A_Mam|LINE|RTE-X -57251 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 159.667-33 chr14 51973405 51973723 + 0.666667 NA Intergenic Intergenic -15982 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 144.667-8 chr1 177724168 177724596 + 0.666667 NA Intergenic L1PA13|LINE|L1 23858 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 205.667-17 chr13 108588569 108588941 + 0.666667 NA Intergenic Intergenic -7150 NM_015011 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 147.5-7 chr1 180946502 180946856 + 0.666667 NA 3' UTR (NM_020950, exon 9 of 9) 3' UTR (NM_020950, exon 9 of 9) 8208 NR_145481 103344928 Hs.665319 NR_145481 ENSG00000232586 KIAA1614-AS1 - KIAA1614 antisense RNA 1 ncRNA 133.833-51 chr3 191628573 191628824 + 0.666667 NA Intergenic Intergenic 167535 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 236.667-5 chr10 59347251 59347723 + 0.666667 NA intron (NM_001347848, intron 4 of 15) intron (NM_001347848, intron 4 of 15) 15062 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 119.5-23 chr12 16663284 16663720 + 0.666667 NA Intergenic Intergenic -55288 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 205.333-44 chr4 128273803 128274328 + 0.666667 NA intron (NM_006320, intron 1 of 2) L1ME4c|LINE|L1 13748 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 156.667-62 chr21 37593633 37594012 + 0.666667 NA Intergenic Intergenic 173523 NM_130438 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 141.667-51 chr2 166459142 166459533 + 0.666667 NA intron (NR_045628, intron 9 of 25) MIRb|SINE|MIR 27634 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 117.667-3 chr1 82499217 82499495 + 0.666667 NA Intergenic Intergenic -403827 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 175.667-22 chr16 52075059 52075509 + 0.666667 NA Intergenic MamRep137|DNA|TcMar-Tigger -1349 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 118.667-26 chr12 25861189 25861489 + 0.666667 NA Intergenic L2a|LINE|L2 12740 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 173-14 chr13 24250684 24251160 + 0.666667 NA intron (NM_153023, intron 2 of 11) intron (NM_153023, intron 2 of 11) 3517 NR_046531 100874231 Hs.577998 NR_046531 ENSG00000227213 SPATA13-AS1 - SPATA13 antisense RNA 1 ncRNA 180.833-21 chr2 61968996 61969467 + 0.666667 NA intron (NM_152516, intron 1 of 2) intron (NM_152516, intron 1 of 2) 63589 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 134-67 chr2 229275102 229275568 + 0.666667 NA Intergenic Intergenic -4048 NM_001100818 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 136.667-71 chr4 60051136 60051456 + 0.666667 NA Intergenic Intergenic -871323 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 158.167-35 chr3 107799938 107800277 + 0.666667 NA intron (NM_001276286, intron 15 of 16) MIR3|SINE|MIR 77961 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 135.5-37 chr17 65060612 65061040 + 0.666667 NA Intergenic L1MB5|LINE|L1 -4086 NM_006572 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 146.333-34 chr16 71704637 71705010 + 0.666667 NA intron (NM_015020, intron 2 of 18) intron (NM_015020, intron 2 of 18) -6122 NR_033337 100379141 Hs.725116 NR_033337 ENSG00000263666 SNORA70D U70D small nucleolar RNA, H/ACA box 70D snoRNA 133.333-19 chr11 19705743 19706119 + 0.666667 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -6906 NM_145117 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 136.333-38 chr17 60468122 60468399 + 0.666667 NA intron (NM_006380, intron 4 of 12) L2a|LINE|L2 45771 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 170.667-58 chr5 82940796 82941110 + 0.666667 NA Intergenic Intergenic -81117 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 124.667-51 chr18 3872537 3872886 + 0.666667 NA intron (NM_001242761, intron 4 of 11) intron (NM_001242761, intron 4 of 11) 1591 NM_001242764 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 117.333-93 chr6 13895960 13896281 + 0.666667 NA Intergenic Intergenic -28326 NM_001165034 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 149.5-16 chr11 89531220 89531494 + 0.666667 NA intron (NM_001143837, intron 2 of 20) intron (NM_001143837, intron 2 of 20) -39138 NM_001300995 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 204.667-30 chr22 26308940 26309397 + 0.666667 NA intron (NM_001184776, intron 6 of 14) intron (NM_001184776, intron 6 of 14) -120092 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 138.333-115 chr9 31606644 31606889 + 0.666667 NA Intergenic Intergenic -225276 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 170.5-37 chr2 237052289 237052781 + 0.666667 NA intron (NR_135202, intron 4 of 6) LTR33A|LTR|ERVL 3632 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 183.667-10 chr1 198255219 198255581 + 0.666667 NA intron (NM_133494, intron 3 of 9) intron (NM_133494, intron 3 of 9) 98402 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 114-13 chr10 33087482 33087820 + 0.666667 NA intron (NR_160030, intron 1 of 2) intron (NR_160030, intron 1 of 2) 29156 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 197.333-58 chr7 87641010 87641501 + 0.666667 NA intron (NM_138290, intron 1 of 11) intron (NM_138290, intron 1 of 11) 12857 NM_001134405 154661 Hs.411488 NM_138290 ENSG00000105784 RUNDC3B RPIB9|RPIP9 RUN domain containing 3B protein-coding 255.833 chr1 176164466 176164937 + 0.666667 NA intron (NM_022457, intron 3 of 19) MLT1L|LTR|ERVL-MaLR 42543 NM_001286644 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 141.667-56 chr20 55413404 55413720 + 0.666667 NA Intergenic L1MD1|LINE|L1 -9481 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 160.667-7 chr1 116314675 116315145 + 0.666667 NA Intergenic Intergenic -58334 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 214.333-6 chr10 25038263 25038717 + 0.666667 NA intron (NM_001270383, intron 2 of 5) intron (NM_001270383, intron 2 of 5) 21878 NM_024838 79896 Hs.645274 NM_024838 ENSG00000185875 THNSL1 TSH1 threonine synthase like 1 protein-coding 119-26 chr12 53893737 53893941 + 0.666667 NA Intergenic AluSx3|SINE|Alu -44992 NM_017410 3229 Hs.118608 NM_017410 ENSG00000123364 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 207.833-4 chr10 33040675 33041124 + 0.666667 NA Intergenic Intergenic 75908 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 159.333-56 chr4 64588975 64589450 + 0.666667 NA Intergenic ERVL-B4-int|LTR|ERVL -179752 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 137.667-19 chr12 24125391 24125647 + 0.666667 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -86902 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 161.833-19 chr2 89833505 89833901 + 0.666667 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -195796 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 198.833-17 chr20 35452920 35453461 + 0.666667 NA TTS (NR_031620) TTS (NR_031620) 907 NR_031620 100302125 NR_031620 ENSG00000221763 MIR1289-1 MIRN1289-1|hsa-mir-1289-1 microRNA 1289-1 ncRNA 134.334-2 chr15 70433523 70434085 + 0.666667 NA Intergenic Intergenic 72124 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 241.5-21 chr5 52364813 52365260 + 0.666667 NA Intergenic Intergenic 357005 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 116-95 chr8 82491673 82491950 + 0.666667 NA Intergenic L1MC4|LINE|L1 -420293 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 348.167 chr10 73565187 73565812 + 0.666667 NA intron (NR_146997, intron 4 of 21) AluJo|SINE|Alu 10176 NM_152586 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 220.667-8 chr12 53043063 53043871 + 0.666667 NA non-coding (NR_033854, exon 4 of 4) non-coding (NR_033854, exon 4 of 4) -3559 NM_198316 23371 Hs.6147 NM_015319 ENSG00000111077 TNS2 C1-TEN|C1TEN|TENC1 tensin 2 protein-coding 160.667-34 chr17 82749086 82749391 + 0.666667 NA intron (NM_022158, intron 5 of 5) intron (NM_022158, intron 5 of 5) -2827 NM_005993 6904 Hs.464391 NM_005993 ENSG00000141556 TBCD PEBAT|SSD-1|tfcD tubulin folding cofactor D protein-coding 144.833-18 chr13 24240478 24240864 + 0.666667 NA intron (NM_001286792, intron 4 of 14) intron (NM_001286792, intron 4 of 14) 13768 NR_046531 100874231 Hs.577998 NR_046531 ENSG00000227213 SPATA13-AS1 - SPATA13 antisense RNA 1 ncRNA 181.833-23 chr2 55473745 55474079 + 0.666667 NA Intergenic L1MB5|LINE|L1 -45683 NM_080667 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 180.333-53 chr7 25721407 25721742 + 0.666667 NA intron (NR_157808, intron 1 of 4) MIR|SINE|MIR 29458 NR_157814 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 200.5-24 chr21 26380274 26380854 + 0.666667 NA Intergenic Intergenic -13071 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 140.833-25 chr17 61950564 61950992 + 0.666667 NA intron (NM_005121, intron 28 of 29) intron (NM_005121, intron 28 of 29) -22796 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 137.667-83 chr6 42816338 42816688 + 0.666667 NA intron (NM_001318819, intron 3 of 13) AluJb|SINE|Alu -4543 NM_015349 23506 Hs.658033 NM_015349 ENSG00000112624 BICRAL GLTSCR1L|KIAA0240 BRD4 interacting chromatin remodeling complex associated protein like protein-coding 158.833-6 chr10 66036008 66036445 + 0.666667 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 464801 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 208.167 chr1 99994357 99994831 + 0.666667 NA intron (NM_001271684, intron 2 of 5) L1MB4|LINE|L1 24077 NM_001271685 23443 Hs.448979 NM_012243 ENSG00000117620 SLC35A3 AMRS solute carrier family 35 member A3 protein-coding 224-39 chr8 77546896 77547339 + 0.666667 NA Intergenic L1PA16|LINE|L1 96420 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 140.167-34 chr2 78130960 78131371 + 0.666667 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 42435 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 135.333-61 chr5 26119932 26120176 + 0.666667 NA Intergenic Intergenic 918532 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 140.333-55 chr4 66952808 66953183 + 0.666667 NA Intergenic Intergenic 469005 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 150.667-28 chr14 49502672 49502987 + 0.666667 NA Intergenic AluSx|SINE|Alu 83551 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 244.5-3 chr10 80684460 80685301 + 0.666667 NA Intergenic Intergenic 35083 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 126.167-18 chr11 90908317 90908836 + 0.666667 NA intron (NR_104190, intron 6 of 6) AluSx|SINE|Alu -39374 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 168-74 chr7 48195948 48196257 + 0.666667 NA intron (NM_152701, intron 2 of 61) intron (NM_152701, intron 2 of 61) 24644 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 200-15 chr14 20150908 20151504 + 0.666667 NA Intergenic Intergenic 7470 NM_001004724 390437 Hs.553766 NM_001004724 ENSG00000184394 OR4N5 - olfactory receptor family 4 subfamily N member 5 protein-coding 234.667 chr1 23857140 23857625 + 0.666667 NA intron (NM_000147, intron 4 of 7) L2c|LINE|L2 10987 NM_000147 2517 Hs.370858 NM_000147 ENSG00000179163 FUCA1 FUCA alpha-L-fucosidase 1 protein-coding 262-22 chr5 105602800 105603362 + 0.666667 NA Intergenic L1PBa|LINE|L1 503607 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 147.333-47 chr20 57327093 57327427 + 0.666667 NA Intergenic Intergenic -2543 NM_012444 23626 Hs.159737 NM_012444 ENSG00000054796 SPO11 CT35|SPATA43|TOPVIA SPO11 initiator of meiotic double stranded breaks protein-coding 158-15 chr12 90960085 90960374 + 0.666667 NA Intergenic Intergenic -5053 NM_152638 196477 Hs.128574 NM_152638 ENSG00000197651 CCER1 C12orf12 coiled-coil glutamate rich protein 1 protein-coding 162.334-10 chr8 100723638 100724191 + 0.666667 NA Intergenic AluSc|SINE|Alu -1826 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 121.167-75 chr6 116099873 116100134 + 0.666667 NA promoter-TSS (NM_152729) promoter-TSS (NM_152729) -850 NM_152729 221294 Hs.520341 NM_152729 ENSG00000178425 NT5DC1 C6orf200|LP2642|NT5C2L1 5'-nucleotidase domain containing 1 protein-coding 129.833-28 chr17 26867060 26867294 + 0.666667 NA Intergenic (GAATG)n|Satellite|Satellite 222064 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 181.5-43 chr4 41633546 41633990 + 0.666667 NA exon (NM_001330672, exon 13 of 32) exon (NM_001330672, exon 13 of 32) 20866 NM_001330983 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 131.333-97 chr8 50297837 50298085 + 0.666667 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 133830 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 140.667-53 chr3 39320604 39320958 + 0.666667 NA Intergenic L1MD1|LINE|L1 -8928 NM_005201 1237 Hs.113222 NM_005201 ENSG00000179934 CCR8 CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1 C-C motif chemokine receptor 8 protein-coding 124-15 chr10 63417411 63417771 + 0.666667 NA intron (NM_001322258, intron 1 of 24) intron (NM_001322258, intron 1 of 24) -12984 NR_134312 105378330 Hs.602852 NR_134312 LOC105378330 - uncharacterized LOC105378330 ncRNA 166.833-17 chr14 103081080 103081572 + 0.666667 NA Intergenic Intergenic -2884 NM_001330236 107984640 NM_001330236 ENSG00000283071 LBHD2 - LBH domain containing 2 protein-coding 176.667-81 chr8 140256016 140256495 + 0.666667 NA intron (NM_001160372, intron 15 of 22) intron (NM_001160372, intron 15 of 22) -155720 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 127-32 chr14 64863855 64864098 + 0.666667 NA intron (NM_001355436, intron 1 of 35) MIRb|SINE|MIR 15931 NM_001355437 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 183.667-2 chr1 48341567 48342202 + 0.666667 NA intron (NM_001286238, intron 11 of 12) MER44C|DNA|TcMar-Tigger 119168 NM_001135181 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 128.333-15 chr10 52548281 52548498 + 0.666667 NA Intergenic L1MC1|LINE|L1 -77856 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 141.833-19 chr2 48798191 48798436 + 0.666667 NA Intergenic Intergenic -42589 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 176.333-57 chr7 158900855 158901236 + 0.666667 NA intron (NM_001350918, intron 9 of 26) L1MC1|LINE|L1 44487 NM_001350916 55112 Hs.389945 NM_018051 ENSG00000126870 WDR60 FAP163|SRPS6|SRTD8 WD repeat domain 60 protein-coding 221.667-17 chr20 7974909 7975461 + 0.666667 NA Intergenic Intergenic -34727 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 215-37 chr6 146798298 146798783 + 0.666667 NA intron (NM_024694, intron 33 of 35) L1M4|LINE|L1 5284 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 174.333-38 chr3 96659409 96659870 + 0.666667 NA Intergenic Intergenic -154955 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 117.167-68 chr3 147281953 147282246 + 0.666667 NA Intergenic L1ME3A|LINE|L1 110331 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 134.333-32 chr14 45643276 45643587 + 0.666667 NA Intergenic Intergenic 72171 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 114-45 chr14 83949381 83949646 + 0.666667 NA Intergenic L1MA4A|LINE|L1 1306881 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 191.833-32 chr7 37033161 37033588 + 0.666667 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 35578 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 133-53 chr21 31478656 31478906 + 0.666667 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 80306 NM_001353690 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 127.5-52 chr4 41967111 41967442 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -14480 NM_001029955 285429 Hs.213307 NM_001029955 ENSG00000182308 DCAF4L1 WDR21B DDB1 and CUL4 associated factor 4 like 1 protein-coding 246.333-7 chr12 23877513 23877928 + 0.666667 NA intron (NM_001330785, intron 2 of 14) MER103C|DNA|hAT-Charlie 71950 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 125.333-95 chr5 120164199 120164483 + 0.666667 NA Intergenic Intergenic -299937 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 125.333-50 chr14 88470794 88471012 + 0.666667 NA intron (NM_007039, intron 15 of 18) intron (NM_007039, intron 15 of 18) 84104 NM_007039 11099 Hs.437040 NM_007039 ENSG00000070778 PTPN21 PTPD1|PTPRL10 protein tyrosine phosphatase non-receptor type 21 protein-coding 168.5-22 chr16 68358142 68358732 + 0.666667 NA non-coding (NR_147056, exon 18 of 18) non-coding (NR_147056, exon 18 of 18) 47323 NM_001290018 54496 Hs.640229 NM_019023 ENSG00000132600 PRMT7 SBIDDS protein arginine methyltransferase 7 protein-coding 114.667-123 chr8 34433898 34434071 + 0.666667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -349937 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 264-7 chr2 77534498 77534965 + 0.666667 NA Intergenic Intergenic -12298 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 134-76 chr3 178004382 178004750 + 0.666667 NA Intergenic Intergenic 187701 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 146.833-14 chr14 28931869 28932359 + 0.666667 NA Intergenic Intergenic -146327 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 189.333 chr1 100046942 100047353 + 0.666667 NA intron (NM_033055, intron 1 of 11) L1M2|LINE|L1 9052 NM_033055 64645 Hs.124156 NM_033055 ENSG00000156875 MFSD14A HIAT1 major facilitator superfamily domain containing 14A protein-coding 250.167-14 chr4 88767322 88767959 + 0.666667 NA intron (NM_001015045, intron 6 of 17) intron (NM_001015045, intron 6 of 17) 55721 NM_001265578 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 170.833-14 chr18 4823241 4823545 + 0.666667 NA Intergenic MER4D1|LTR|ERV1 -257789 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 165-37 chr3 186749469 186749771 + 0.666667 NA Intergenic AluJr|SINE|Alu 32261 NM_001166451 3827 Hs.77741 NM_000893 ENSG00000113889 KNG1 BDK|BK|HMWK|KNG kininogen 1 protein-coding 164.333-34 chr2 166453721 166454051 + 0.666667 NA intron (NR_045628, intron 10 of 25) intron (NR_045628, intron 10 of 25) 33085 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 116.667-83 chr4 71888546 71888758 + 0.666667 NA Intergenic L1M3|LINE|L1 -83132 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 121-88 chr8 61429760 61430113 + 0.666667 NA intron (NM_173519, intron 3 of 5) intron (NM_173519, intron 3 of 5) 141966 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 190.667-12 chr14 55577899 55578236 + 0.666667 NA intron (NR_027123, intron 2 of 2) AluSx1|SINE|Alu 2025 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 194-18 chr14 56126754 56127230 + 0.666667 NA intron (NM_021255, intron 1 of 5) intron (NM_021255, intron 1 of 5) 8581 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 124.5-14 chr11 75739087 75739465 + 0.666667 NA Intergenic L1MC3|LINE|L1 21438 NM_025098 80168 Hs.288568 NM_025098 ENSG00000166391 MOGAT2 DGAT2L5|DGAT2L5.|MGAT2|hDC5 monoacylglycerol O-acyltransferase 2 protein-coding 165-29 chr20 11062161 11062518 + 0.666667 NA Intergenic Intergenic 35795 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 197-33 chr3 73323190 73323741 + 0.666667 NA Intergenic MamRep1879|DNA|hAT-Tip100? 110530 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 138.833-49 chr20 52498819 52499045 + 0.666667 NA Intergenic Intergenic -121906 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 165.167-34 chr4 5648206 5648684 + 0.666667 NA intron (NM_147127, intron 9 of 21) intron (NM_147127, intron 9 of 21) 60114 NM_147127 132884 Hs.87306 NM_147127 ENSG00000173040 EVC2 LBN|WAD EvC ciliary complex subunit 2 protein-coding 130-48 chr2 37234432 37234812 + 0.666667 NA intron (NR_146404, intron 2 of 8) intron (NR_146404, intron 2 of 8) 2964 NM_001083946 55471 Hs.433466 NM_018607 ENSG00000003509 NDUFAF7 C2orf56|MidA|PRO1853 NADH:ubiquinone oxidoreductase complex assembly factor 7 protein-coding 237.167-13 chr20 20134202 20134898 + 0.666667 NA intron (NM_015585, intron 8 of 26) L2c|LINE|L2 77904 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 141.167-6 chr1 237600438 237600695 + 0.666667 NA intron (NM_001035, intron 34 of 104) L1MA6|LINE|L1 129447 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 137-40 chr16 74870678 74870999 + 0.666667 NA TTS (NM_030581) TTS (NM_030581) -96018 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 230-25 chr5 37725922 37726463 + 0.666667 NA intron (NM_001345998, intron 16 of 17) intron (NM_001345998, intron 16 of 17) 108630 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 158.5-90 chrX 45062160 45062604 + 0.666667 NA intron (NR_111960, intron 14 of 27) L1ME4b|LINE|L1 138494 NM_024689 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 113.667-88 chr4 5214497 5214783 + 0.666667 NA intron (NM_001306082, intron 4 of 12) L1M5|LINE|L1 163160 NM_001345969 55351 Hs.133062 NM_018401 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 217.833-25 chr8 98926000 98926508 + 0.666667 NA intron (NM_001256312, intron 1 of 12) intron (NM_001256312, intron 1 of 12) 16356 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 119-28 chr13 32687184 32687503 + 0.666667 NA intron (NM_015032, intron 12 of 34) intron (NM_015032, intron 12 of 34) 100891 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 193.5-36 chr3 163714574 163714920 + 0.666667 NA Intergenic L1MEg|LINE|L1 -411446 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 231.167-28 chr6 151308396 151308951 + 0.666667 NA intron (NM_005100, intron 3 of 4) intron (NM_005100, intron 3 of 4) -16858 NM_144497 9590 Hs.371240 NM_005100 ENSG00000131016 AKAP12 AKAP250|SSeCKS A-kinase anchoring protein 12 protein-coding 157.167-67 chr9 84880523 84880898 + 0.666667 NA intron (NM_001018064, intron 13 of 17) intron (NM_001018064, intron 13 of 17) 174809 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 145.5-86 chr8 136018087 136018399 + 0.666667 NA Intergenic (AGATGT)n|Simple_repeat|Simple_repeat -512555 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 145.833-75 chr7 80638670 80639032 + 0.666667 NA intron (NM_001371079, intron 1 of 13) intron (NM_001371079, intron 1 of 13) 209 NM_001371079 123.667-30 chr13 33053269 33053711 + 0.666667 NA intron (NM_004795, intron 1 of 4) intron (NM_004795, intron 1 of 4) 37067 NM_004795 9365 Hs.524953 NM_004795 ENSG00000133116 KL HFTC3 klotho protein-coding 219.167-14 chr2 43388771 43389345 + 0.666667 NA intron (NM_001083953, intron 29 of 37) MIR|SINE|MIR 161847 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 155-24 chr14 46902551 46902851 + 0.666667 NA intron (NM_001113498, intron 10 of 16) intron (NM_001113498, intron 10 of 16) -250920 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 166-5 chr1 215015199 215015570 + 0.666667 NA intron (NM_001017424, intron 1 of 6) intron (NM_001017424, intron 1 of 6) 9842 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 156-64 chr5 38251536 38251955 + 0.666667 NA Intergenic Intergenic -6814 NM_152403 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 143.333-55 chr3 9407208 9407673 + 0.666667 NA intron (NM_001080517, intron 1 of 22) intron (NM_001080517, intron 1 of 22) 9740 NM_001080517 55209 Hs.288164 NM_018187 ENSG00000168137 SETD5 - SET domain containing 5 protein-coding 178-68 chr8 110032355 110032695 + 0.666667 NA Intergenic Intergenic -56754 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 118.667-46 chr18 9857668 9857846 + 0.666667 NA intron (NM_006868, intron 6 of 6) AluJr|SINE|Alu -28216 NM_032243 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 139.167-11 chr11 106456101 106456373 + 0.666667 NA Intergenic MIRb|SINE|MIR 204830 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 156.333-70 chr4 70372136 70372410 + 0.666667 NA Intergenic Intergenic -10858 NM_006685 10879 Hs.650650 NM_006685 ENSG00000171201 SMR3B P-B|PBII|PRL3|PROL3|SMR1B submaxillary gland androgen regulated protein 3B protein-coding 240.667-3 chr1 41903048 41903658 + 0.666667 NA intron (NR_038261, intron 2 of 3) MIR|SINE|MIR 15569 NM_024503 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 120-94 chr6 34233621 34234043 + 0.666667 NA Intergenic Intergenic -3041 NM_001319077 3159 Hs.518805 NM_002131 ENSG00000137309 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding 144-41 chr2 193575697 193576026 + 0.666667 NA Intergenic Intergenic -768408 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 132.667-11 chr10 56761969 56762335 + 0.666667 NA Intergenic L1PA16|LINE|L1 -400879 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 141.667-91 chr5 126517903 126518154 + 0.666667 NA Intergenic AluSq|SINE|Alu 52878 NM_001146322 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 229.5-21 chr3 187124409 187124883 + 0.666667 NA intron (NM_052969, intron 2 of 2) intron (NM_052969, intron 2 of 2) 14850 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 199.5-47 chr8 118904075 118904648 + 0.666667 NA Intergenic Intergenic 47524 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 123.667-40 chr17 59530535 59530783 + 0.666667 NA Intergenic Intergenic -3802 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 199.833-11 chr15 81757168 81757643 + 0.666667 NA Intergenic MER57A1|LTR|ERV1 288613 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 139.833-44 chr2 140021091 140021504 + 0.666667 NA Intergenic Intergenic 565388 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 201.5-7 chr13 31312012 31312578 + 0.666667 NA intron (NM_194318, intron 12 of 14) LTR62|LTR|ERVL 112320 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 140.5-64 chr5 170740509 170740799 + 0.666667 NA Intergenic Intergenic -43065 NM_001291985 2568 Hs.26225 NM_014211 ENSG00000094755 GABRP - gamma-aminobutyric acid type A receptor pi subunit protein-coding 297.667-4 chr3 43357851 43358461 + 0.666667 NA Intergenic L1PREC2|LINE|L1 -6194 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 171.667-18 chr12 47699322 47699802 + 0.666667 NA intron (NM_024604, intron 3 of 16) intron (NM_024604, intron 3 of 16) 6468 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 146-52 chr3 98226414 98226815 + 0.666667 NA Intergenic MSTB1|LTR|ERVL-MaLR -37630 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 152.167-33 chr2 225082482 225082791 + 0.666667 NA Intergenic LTR78B|LTR|ERV1 -40168 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 187.666 chr4 31273017 31273572 + 0.666667 NA Intergenic Intergenic 102150 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 294.5 chr11 85701025 85701799 + 0.666667 NA intron (NM_001365832, intron 3 of 6) Tigger4b|DNA|TcMar-Tigger -15217 NM_152723 220388 Hs.376241 NM_152723 ENSG00000179071 CCDC89 - coiled-coil domain containing 89 protein-coding 244.667-23 chr6 168695959 168696430 + 0.666667 NA Intergenic Intergenic 255010 NM_001166412 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 125.167-30 chr17 66029503 66029857 + 0.666667 NA intron (NM_001353129, intron 13 of 26) AluJr|SINE|Alu 162212 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 124.167-20 chr13 34297905 34298185 + 0.666667 NA Intergenic L1MEc|LINE|L1 -49998 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 205.667-19 chr14 71963018 71963578 + 0.666667 NA intron (NM_001370288, intron 1 of 16) MIRc|SINE|MIR 29771 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 180.167-59 chr8 125264812 125265340 + 0.666667 NA intron (NM_001349486, intron 5 of 7) MER96B|DNA|hAT-Tip100 -165282 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 156-20 chr12 100673647 100674111 + 0.666667 NA Intergenic L2c|LINE|L2 80261 NM_001303131 283431 Hs.20575 NM_174942 ENSG00000139354 GAS2L3 G2L3 growth arrest specific 2 like 3 protein-coding 206.167-25 chr7 105866212 105866854 + 0.666667 NA intron (NM_152749, intron 2 of 3) intron (NM_152749, intron 2 of 3) 10052 NM_020725 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 124.833-75 chr5 45711250 45711539 + 0.666667 NA Intergenic Intergenic -15014 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 153-8 chr10 52506600 52507001 + 0.666667 NA Intergenic LOR1-int|LTR|ERV1 -36267 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 149-65 chr5 103111945 103112476 + 0.666667 NA intron (NR_134299, intron 1 of 4) intron (NR_134299, intron 1 of 4) 7928 NM_001317954 54826 Hs.24088 NM_017676 ENSG00000145723 GIN1 GIN-1|TGIN1|ZH2C2 gypsy retrotransposon integrase 1 protein-coding 154.167-49 chr4 55630468 55631038 + 0.666667 NA intron (NR_120489, intron 1 of 8) L1PB2|LINE|L1 5545 NM_006681 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 197-34 chr3 186219717 186220208 + 0.666667 NA intron (NM_001346, intron 20 of 24) Charlie19a|DNA|hAT-Charlie -110873 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 166-8 chr10 7860021 7860365 + 0.666667 NA intron (NM_031923, intron 2 of 6) AluJb|SINE|Alu 41688 NM_031923 83860 Hs.527688 NM_031923 ENSG00000165632 TAF3 TAF140|TAFII-140|TAFII140 TATA-box binding protein associated factor 3 protein-coding 180.667-71 chr8 31956850 31957278 + 0.666667 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -68672 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 127.834-6 chr6 157357083 157357624 + 0.666667 NA Intergenic Intergenic -23837 NM_024630 79683 Hs.596214 NM_024630 ENSG00000175048 ZDHHC14 NEW1CP zinc finger DHHC-type containing 14 protein-coding 157.167-55 chr7 7896754 7897264 + 0.666667 NA Intergenic Intergenic 71743 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 244-9 chr2 73561498 73562077 + 0.666667 NA intron (NM_015120, intron 15 of 22) intron (NM_015120, intron 15 of 22) 80635 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 166-77 chr9 83758005 83758402 + 0.666667 NA intron (NM_001135953, intron 7 of 11) intron (NM_001135953, intron 7 of 11) 49872 NR_135840 105376114 Hs.9589 NR_135839 ENSG00000254473 LOC105376114 - uncharacterized LOC105376114 ncRNA 174.667-31 chr2 26267853 26268214 + 0.666667 NA intron (NM_001281512, intron 4 of 14) AluJr|SINE|Alu 23094 NM_001281513 3032 Hs.515848 NM_000183 ENSG00000138029 HADHB ECHB|MSTP029|MTPB|TP-BETA hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta protein-coding 203-25 chr20 43063524 43063972 + 0.666667 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 95005 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 180.667-37 chr2 138910875 138911496 + 0.666667 NA Intergenic L2c|LINE|L2 13861 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 119.333-72 chr4 65714120 65714355 + 0.666667 NA Intergenic L1MEf|LINE|L1 -43742 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 183.333-53 chr7 39608911 39609441 + 0.666667 NA intron (NM_001282446, intron 2 of 2) HAL1|LINE|L1 -14396 NM_005402 5898 Hs.6906 NM_005402 ENSG00000006451 RALA RAL RAS like proto-oncogene A protein-coding 146.167-28 chr18 6217481 6217859 + 0.666667 NA intron (NM_001365769, intron 10 of 16) intron (NM_001365769, intron 10 of 16) -39074 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 128.667-93 chr5 22988478 22988924 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -135357 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 133.333-12 chr10 43647927 43648161 + 0.666667 NA TTS (NR_047558) TTS (NR_047558) 755 NM_001324168 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 183.667-46 chr21 30375121 30375619 + 0.666667 NA promoter-TSS (NR_036221) promoter-TSS (NR_036221) 8 NR_036221 100422891 NR_036221 ENSG00000265007 MIR4327 - microRNA 4327 ncRNA 172.5-53 chr6 98278010 98278440 + 0.666667 NA Intergenic MLT2B2|LTR|ERVL 253694 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 127.667-101 chr9 16646348 16646612 + 0.666667 NA intron (NM_001317940, intron 2 of 5) L1ME2|LINE|L1 -80334 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 132.5-82 chr6 53760315 53760657 + 0.666667 NA Intergenic Intergenic -34519 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 121.667-67 chr3 194877911 194878168 + 0.666667 NA Intergenic L2b|LINE|L2 -109330 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 178.833-28 chr4 54933823 54934291 + 0.666667 NA Intergenic L2a|LINE|L2 191538 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 122-36 chr2 68562924 68563205 + 0.666667 NA intron (NM_173545, intron 8 of 9) intron (NM_173545, intron 8 of 9) -80524 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 127-70 chr3 108072119 108072361 + 0.666667 NA intron (NM_198793, intron 2 of 8) intron (NM_198793, intron 2 of 8) 18848 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 141.667-44 chr2 2016406 2016803 + 0.666667 NA intron (NM_015025, intron 4 of 24) intron (NM_015025, intron 4 of 24) -272089 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 146.5-19 chr12 8489926 8490366 + 0.666667 NA Intergenic L1MB1|LINE|L1 -23357 NM_080387 338339 Hs.351811 NM_080387 ENSG00000166527 CLEC4D CD368|CLEC-6|CLEC6|CLECSF8|Dectin-3|MCL|MPCL C-type lectin domain family 4 member D protein-coding 250.5-2 chr12 30175925 30176432 + 0.666667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -391419 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 183.833-10 chr13 84225325 84225844 + 0.666667 NA intron (NR_046871, intron 1 of 6) intron (NR_046871, intron 1 of 6) 84982 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 223-20 chr4 22480375 22481098 + 0.666667 NA intron (NM_145290, intron 1 of 18) intron (NM_145290, intron 1 of 18) -34576 NR_162129 113219450 NR_162129 MIR12115 - microRNA 12115 ncRNA 244.667-19 chr5 40380052 40380724 + 0.666667 NA Intergenic Intergenic -299527 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 137-60 chr2 139306967 139307325 + 0.666667 NA Intergenic Intergenic 409822 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 150.333-81 chr5 13255521 13255888 + 0.666667 NA Intergenic Intergenic -222818 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 234-23 chr2 200359571 200360064 + 0.666667 NA intron (NM_001282743, intron 2 of 11) intron (NM_001282743, intron 2 of 11) 50867 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 169.667-51 chr3 84689879 84690296 + 0.666667 NA intron (NR_033860, intron 14 of 20) L1MEc|LINE|L1 179488 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 210.833-6 chr12 61469416 61469807 + 0.666667 NA Intergenic HAL1|LINE|L1 723228 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 177.167-10 chr17 42043508 42044094 + 0.666667 NA intron (NM_001358661, intron 1 of 2) intron (NM_001358661, intron 1 of 2) -5775 NM_001242704 201181 Hs.443140 NM_001013624 ENSG00000187595 ZNF385C - zinc finger protein 385C protein-coding 143.667-98 chr7 113953017 113953336 + 0.666667 NA Intergenic L1PA13|LINE|L1 -34167 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 173.5-42 chr4 133616675 133617259 + 0.666667 NA Intergenic Intergenic 467673 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 188-45 chr5 59166232 59166575 + 0.666667 NA intron (NM_001364602, intron 5 of 5) intron (NM_001364602, intron 5 of 5) 109712 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 155.5-63 chr9 30718154 30718554 + 0.666667 NA Intergenic L1PA16|LINE|L1 -309900 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 129-83 chr6 52210921 52211160 + 0.666667 NA Intergenic ORSL-2a|DNA|hAT-Tip100 24665 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 140.5-71 chr7 13784654 13784950 + 0.666667 NA Intergenic Intergenic 201712 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 173-20 chr15 60206837 60207458 + 0.666667 NA Intergenic Intergenic 190839 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 268.5-7 chr2 63567595 63568230 + 0.666667 NA intron (NR_148705, intron 1 of 16) intron (NR_148705, intron 1 of 16) 20565 NM_001354045 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 226-27 chr9 132059820 132060569 + 0.666667 NA intron (NM_001253881, intron 2 of 6) intron (NM_001253881, intron 2 of 6) 19673 NM_004269 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 125.167-35 chr2 30701301 30701844 + 0.666667 NA Intergenic L1ME1|LINE|L1 105874 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 278.667-10 chr2 71191672 71192437 + 0.666667 NA intron (NM_020459, intron 2 of 3) intron (NM_020459, intron 2 of 3) 35049 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 181.5-41 chr3 191688112 191688519 + 0.666667 NA Intergenic AluSx1|SINE|Alu 227152 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 312.333-12 chr8 110744172 110744796 + 0.666667 NA Intergenic Intergenic 282949 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 136.667-75 chr4 147272972 147273216 + 0.666667 NA Intergenic L1MA8|LINE|L1 71623 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 163-11 chr10 133398231 133398630 + 0.666667 NA intron (NM_138384, intron 3 of 10) intron (NM_138384, intron 3 of 10) 4273 NM_138384 92170 Hs.501578 NM_138384 ENSG00000148824 MTG1 GTP|GTPBP7 mitochondrial ribosome associated GTPase 1 protein-coding 172.667-89 chrX 81137132 81137591 + 0.666667 NA intron (NM_030763, intron 1 of 6) L1MDa|LINE|L1 64552 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 126.167-70 chr5 40190878 40191214 + 0.666667 NA Intergenic Intergenic 138755 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 235-34 chr8 83955096 83955777 + 0.666667 NA Intergenic Intergenic -227351 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 179.333-36 chr22 30686280 30686596 + 0.666667 NA Intergenic MER6A|DNA|TcMar-Tigger -7344 NM_001282738 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 165.5-43 chr4 90183404 90183860 + 0.666667 NA intron (NM_001145065, intron 1 of 10) intron (NM_001145065, intron 1 of 10) -51399 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 224.833-7 chr18 1806776 1807283 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -447400 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 165.333-63 chr7 81642657 81643204 + 0.666667 NA intron (NR_126025, intron 1 of 10) AluSq|SINE|Alu -16714 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 123.667-89 chr5 109315955 109316219 + 0.666667 NA intron (NR_149040, intron 3 of 3) Charlie13a|DNA|hAT-Charlie 10282 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 125.667-28 chr14 26227542 26227768 + 0.666667 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 325775 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 184-43 chr4 99162854 99163209 + 0.666667 NA intron (NR_037884, intron 3 of 9) intron (NR_037884, intron 3 of 9) -1384 NR_028270 359806 Hs.537400 NR_028270 PCNAP1 p1PCNA proliferating cell nuclear antigen pseudogene 1 pseudo 146.667-61 chr22 30610193 30610494 + 0.666667 NA intron (NM_000355, intron 1 of 8) Charlie15b|DNA|hAT-Charlie 3169 NM_000355 6948 Hs.417948 NM_000355 ENSG00000185339 TCN2 D22S676|D22S750|II|TC|TC II|TC-2|TC2|TCII transcobalamin 2 protein-coding 261.167-15 chr4 110352183 110352657 + 0.666667 NA Intergenic Intergenic -123735 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 156.833-64 chr9 96425188 96425477 + 0.666667 NA Intergenic AluSx|SINE|Alu -6962 NM_153695 195828 Hs.494557 NM_153695 ENSG00000165244 ZNF367 AFF29|CDC14B|ZFF29 zinc finger protein 367 protein-coding 178-72 chr9 82089932 82090335 + 0.666667 NA Intergenic Intergenic 101361 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 137.667-38 chr16 51709777 51710083 + 0.666667 NA Intergenic Intergenic -52589 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 148.833-66 chr9 100907816 100908209 + 0.666667 NA Intergenic Intergenic -120715 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 162.667-15 chr12 78456053 78456524 + 0.666667 NA Intergenic Intergenic -96542 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 197.333-33 chr22 31460758 31461215 + 0.666667 NA intron (NM_001164502, intron 4 of 16) intron (NM_001164502, intron 4 of 16) 28570 NM_001164501 56478 Hs.517559 NM_019843 ENSG00000184708 EIF4ENIF1 4E-T|Clast4 eukaryotic translation initiation factor 4E nuclear import factor 1 protein-coding 172.333-77 chr9 101673963 101674319 + 0.666667 NA intron (NM_133445, intron 2 of 8) intron (NM_133445, intron 2 of 8) 64439 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 217.5-12 chr14 73127202 73127631 + 0.666667 NA Intergenic Intergenic -9091 NM_000021 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 158.333-71 chr8 81846908 81847264 + 0.666667 NA Intergenic HERV4_I-int|LTR|ERV1 -4800 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 186.833-27 chr2 123293725 123294028 + 0.666667 NA Intergenic Intergenic -220395 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 153-21 chr16 25729202 25729595 + 0.666667 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 37439 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 141.5-41 chr19 14694637 14695007 + 0.666667 NA intron (NM_001352240, intron 2 of 12) MER58A|DNA|hAT-Charlie 4774 NM_001300912 84449 Hs.515215 NM_032433 ENSG00000160961 ZNF333 - zinc finger protein 333 protein-coding 142.833-38 chr2 60886096 60886438 + 0.666667 NA intron (NM_002908, intron 1 of 10) intron (NM_002908, intron 1 of 10) 4693 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 186.667-50 chr22 44361153 44361673 + 0.666667 NA Intergenic MIRb|SINE|MIR -48462 NM_001099294 85352 Hs.6829 NM_001099294 ENSG00000138944 SHISAL1 KIAA1644 shisa like 1 protein-coding 140.5-67 chr6 43894633 43895155 + 0.666667 NA intron (NR_024478, intron 1 of 1) AluY|SINE|Alu 3866 NR_024478 100132354 Hs.376232 NR_024478 LINC01512 HI-LNC77 long intergenic non-protein coding RNA 1512 ncRNA 249.334-9 chr7 42195483 42196121 + 0.666667 NA intron (NM_000168, intron 2 of 14) L2c|LINE|L2 41407 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 133-88 chr7 34275247 34275491 + 0.666667 NA Intergenic Intergenic 369830 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 174.834 chr14 84377441 84377949 + 0.666667 NA Intergenic Tigger9b|DNA|TcMar-Tigger -894237 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 117.667-5 chr1 175226433 175226716 + 0.666667 NA Intergenic MamGypLTR3a|LTR|Gypsy -33587 NM_001319230 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 150.5-23 chr14 49748984 49749382 + 0.666667 NA intron (NM_172193, intron 12 of 12) intron (NM_172193, intron 12 of 12) -18970 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 193.5-21 chr18 74818025 74818381 + 0.666667 NA intron (NM_017757, intron 3 of 7) intron (NM_017757, intron 3 of 7) 187240 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 207.667-47 chr7 37347233 37347650 + 0.666667 NA intron (NM_001206480, intron 1 of 21) THE1B|LTR|ERVL-MaLR 6227 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 191.667-36 chr3 99779330 99779751 + 0.666667 NA intron (NM_001850, intron 3 of 4) intron (NM_001850, intron 3 of 4) -38322 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 177-10 chr10 100841475 100841902 + 0.666667 NA Intergenic AluSz6|SINE|Alu -71275 NM_018121 55719 Hs.447458 NM_018121 ENSG00000119906 SLF2 C10orf6|FAM178A SMC5-SMC6 complex localization factor 2 protein-coding 174-13 chr11 102062867 102063342 + 0.666667 NA intron (NM_001195005, intron 3 of 3) intron (NM_001195005, intron 3 of 3) 15666 NM_001363505 85016 Hs.98328 NM_032930 ENSG00000137691 CFAP300 C11orf70|CILD38 cilia and flagella associated protein 300 protein-coding 166.333-35 chr2 57819847 57820131 + 0.666667 NA Intergenic L1M5|LINE|L1 -87662 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 312.333-8 chr19 43664239 43664859 + 0.666667 NA intron (NM_001005376, intron 3 of 6) AluJo|SINE|Alu 5620 NM_001005377 5329 Hs.466871 NM_002659 ENSG00000011422 PLAUR CD87|U-PAR|UPAR|URKR plasminogen activator, urokinase receptor protein-coding 170-39 chr2 128343252 128343782 + 0.666667 NA Intergenic MIR|SINE|MIR -24649 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 220.167-23 chr5 22481662 22482305 + 0.666667 NA intron (NM_004061, intron 2 of 14) L1MA10|LINE|L1 -268133 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 282-14 chr2 225862647 225863177 + 0.666667 NA Intergenic L1MC3|LINE|L1 -279882 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 140.333-76 chr7 4257334 4257726 + 0.666667 NA intron (NM_001079653, intron 18 of 19) intron (NM_001079653, intron 18 of 19) -122693 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 166.333-68 chr6 95587654 95588155 + 0.666667 NA intron (NM_024641, intron 2 of 4) L1MCa|LINE|L1 10369 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 190.167-8 chr13 56508593 56508902 + 0.666667 NA Intergenic Intergenic -632171 NM_001130404 729233 Hs.723090 NM_001130404 ENSG00000204918 PRR20B PRR20|PRR20A|PRR20C|PRR20D|PRR20E proline rich 20B protein-coding 205-13 chr18 11028441 11028823 + 0.666667 NA intron (NM_022068, intron 2 of 51) intron (NM_022068, intron 2 of 51) 120130 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 135.5-75 chr8 99732139 99732384 + 0.666667 NA intron (NM_017890, intron 39 of 61) MLT1J|LTR|ERVL-MaLR 161446 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 171.5-56 chr7 3614272 3614754 + 0.666667 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 313261 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 240.167-15 chr4 63156938 63157454 + 0.666667 NA Intergenic LOR1a|LTR|ERV1 -995431 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 138.333-61 chr2 95174891 95175220 + 0.666667 NA intron (NM_001291604, intron 1 of 2) AluJr|SINE|Alu 9246 NM_001291604 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 211-10 chr11 6758026 6758529 + 0.666667 NA Intergenic Intergenic 10680 NM_001004490 338755 Hs.534614 NM_001004490 ENSG00000188124 OR2AG2 OR11-76|OR2AG2P olfactory receptor family 2 subfamily AG member 2 protein-coding 132.167-22 chr15 71141101 71141422 + 0.666667 NA promoter-TSS (NM_024817) promoter-TSS (NM_024817) -188 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 150.333-14 chr10 70209779 70210056 + 0.666667 NA intron (NM_021129, intron 6 of 10) intron (NM_021129, intron 6 of 10) 23512 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 234.5-19 chr20 17454987 17455457 + 0.666667 NA intron (NM_002594, intron 9 of 11) intron (NM_002594, intron 9 of 11) 76157 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 118-69 chr22 19457654 19457902 + 0.666667 NA intron (NM_001035247, intron 7 of 11) AluSq|SINE|Alu -9546 NM_001166242 128977 Hs.659565 NM_173793 ENSG00000242259 C22orf39 - chromosome 22 open reading frame 39 protein-coding 134.333-60 chr2 80295742 80296134 + 0.666667 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 8814 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 169-58 chr8 20749897 20750412 + 0.666667 NA Intergenic MLT1C|LTR|ERVL-MaLR -135228 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 130.333-18 chr11 45760663 45760986 + 0.666667 NA Intergenic MER75|DNA|PiggyBac -10608 NR_027134 374387 Hs.632142 NM_199137 ENSG00000205106 LINC02716 DKFZp779M0652 long intergenic non-protein coding RNA 2716 ncRNA 145.167-30 chr2 19970230 19970674 + 0.666667 NA intron (NM_001006657, intron 8 of 27) intron (NM_001006657, intron 8 of 27) 19653 NM_001006657 57539 Hs.205427 NM_020779 ENSG00000118965 WDR35 CED2|IFT121|IFTA1|SRTD7 WD repeat domain 35 protein-coding 118.333-20 chr11 94809158 94809375 + 0.666667 NA intron (NM_130847, intron 3 of 12) AluSz|SINE|Alu 40910 NM_001301007 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 207.667-33 chr4 72980396 72980867 + 0.666667 NA Intergenic AluJb|SINE|Alu 89085 NM_001297732 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 148.334-4 chr19 44350230 44350864 + 0.666667 NA intron (NM_001348281, intron 1 of 4) Cheshire|DNA|hAT-Charlie 6133 NM_013380 7771 Hs.48589 NM_013380 ENSG00000062370 ZNF112 ZFP112|ZNF228 zinc finger protein 112 protein-coding 128.833-2 chr1 45993580 45993986 + 0.666667 NA intron (NM_001324320, intron 5 of 29) MER77B|LTR|ERVL 129435 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 130.5-38 chr19 28547388 28547680 + 0.666667 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) -59154 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 140.667-10 chr10 70838252 70838622 + 0.666667 NA intron (NM_003901, intron 2 of 14) intron (NM_003901, intron 2 of 14) 22489 NM_003901 8879 Hs.499984 NM_003901 ENSG00000166224 SGPL1 NPHS14|S1PL|SPL sphingosine-1-phosphate lyase 1 protein-coding 126.167-96 chr9 110441116 110441351 + 0.666667 NA intron (NM_153366, intron 27 of 47) intron (NM_153366, intron 27 of 47) -103349 NM_001286947 255220 Hs.147064 NM_001003936 ENSG00000204193 TXNDC8 SPTRX-3|SPTRX3|TRX6|bA427L11.2 thioredoxin domain containing 8 protein-coding 133.333-81 chr3 121329280 121329576 + 0.666667 NA intron (NM_001348343, intron 21 of 27) L3|LINE|CR1 216560 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 167.333-38 chr2 192355495 192355822 + 0.666667 NA Intergenic Intergenic -160725 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 213.833-34 chr7 18216762 18217156 + 0.666667 NA intron (NM_001321872, intron 2 of 11) MER91B|DNA|hAT-Tip100 -73133 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 146.5-14 chr10 75702684 75703051 + 0.666667 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) -9588 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 162.167-11 chr12 49273079 49273448 + 0.666667 NA TTS (NM_001303114) TTS (NM_001303114) 8181 NM_032704 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 122.5-74 chr5 123978050 123978441 + 0.666667 NA Intergenic Intergenic 432828 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 165-53 chr6 105991461 105991938 + 0.666667 NA Intergenic Intergenic -94637 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 260.833-12 chr6 44614651 44615236 + 0.666667 NA Intergenic AluSp|SINE|Alu -63062 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 153.833-59 chr8 63692160 63692518 + 0.666667 NA Intergenic Intergenic -77091 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 188.333-64 chr9 30286067 30286471 + 0.666667 NA Intergenic Intergenic 122185 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 176.333-52 chr6 54129366 54129828 + 0.666667 NA intron (NM_138569, intron 3 of 12) intron (NM_138569, intron 3 of 12) 18154 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 171.167-30 chr2 211299350 211299843 + 0.666667 NA Intergenic MER84|LTR|ERV1 682025 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 169.333-50 chr3 133083935 133084390 + 0.666667 NA intron (NM_001136469, intron 2 of 5) intron (NM_001136469, intron 2 of 5) -40659 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 117.333-18 chr12 19858994 19859379 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR -155499 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 190.167-14 chr14 81439122 81439522 + 0.666667 NA Intergenic L1MB7|LINE|L1 -2857 NM_001366850 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 169.334-4 chr4 147327707 147328209 + 0.666667 NA Intergenic Intergenic 16759 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 135.5-52 chr21 28778467 28778964 + 0.666667 NA Intergenic L1MD2|LINE|L1 106652 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 133.333-30 chr12 89028727 89028980 + 0.666667 NA Intergenic L2b|LINE|L2 -9161 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 139-56 chr5 155896963 155897217 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -429667 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 132.167-17 chr13 103322479 103322722 + 0.666667 NA Intergenic L1MB7|LINE|L1 -102600 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 188.334-3 chr12 43627206 43627706 + 0.666667 NA Intergenic AluSz6|SINE|Alu -75253 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 358.5-3 chr4 89537123 89537948 + 0.666667 NA Intergenic Intergenic -229735 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 134.667-56 chr21 20695998 20696271 + 0.666667 NA Intergenic L1ME1|LINE|L1 106974 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 140.667-46 chr2 186326905 186327401 + 0.666667 NA Intergenic Intergenic -159107 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 166.833-33 chr5 131156381 131156858 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR 8637 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 225.333-11 chr16 89420356 89420733 + 0.666667 NA intron (NR_045839, intron 1 of 9) intron (NR_045839, intron 1 of 9) -10374 NR_110932 101927817 Hs.667942 NR_110931 LOC101927817 - uncharacterized LOC101927817 ncRNA 126.333-88 chr5 100229834 100230269 + 0.666667 NA Intergenic Intergenic 158203 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 124-82 chr6 88732921 88733217 + 0.666667 NA intron (NM_001286428, intron 11 of 13) L1MCa|LINE|L1 -193700 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 198.834-11 chr7 133490620 133491167 + 0.666667 NA intron (NM_021807, intron 9 of 17) intron (NM_021807, intron 9 of 17) 200012 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 144.333-27 chr13 98943426 98943657 + 0.666667 NA intron (NM_001366682, intron 2 of 53) intron (NM_001366682, intron 2 of 53) 34523 NM_001366682 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 138-55 chr2 98127292 98127515 + 0.666667 NA intron (NR_144298, intron 5 of 15) intron (NR_144298, intron 5 of 15) -22130 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 182.667-13 chr11 127111110 127111822 + 0.666667 NA Intergenic Intergenic 44464 NR_120578 101929473 Hs.737523 NR_120578 ENSG00000255087 LOC101929473 - uncharacterized LOC101929473 ncRNA 149.667-53 chr3 170529997 170530295 + 0.666667 NA intron (NM_020949, intron 1 of 7) MLT1C|LTR|ERVL-MaLR 55929 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 157.667-57 chr5 51706816 51707244 + 0.666667 NA Intergenic Intergenic -301001 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 197.167-41 chr5 45269445 45269853 + 0.666667 NA intron (NM_021072, intron 6 of 7) intron (NM_021072, intron 6 of 7) 426731 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 129.333-16 chr11 40838447 40838732 + 0.666667 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -545459 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 154.833-53 chr7 27870557 27871020 + 0.666667 NA intron (NM_175061, intron 3 of 4) intron (NM_175061, intron 3 of 4) 130693 NM_001079864 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 195.5 chr1 154843037 154843540 + 0.666667 NA intron (NM_001204087, intron 1 of 8) intron (NM_001204087, intron 1 of 8) 16588 NM_170782 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 174.334-4 chr8 122105530 122106029 + 0.666667 NA Intergenic Intergenic 462865 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 145.5-25 chr15 69854015 69854455 + 0.666667 NA Intergenic Arthur1B|DNA|hAT-Tip100 19001 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 171.833-23 chr2 214743284 214743656 + 0.666667 NA intron (NM_001282549, intron 3 of 4) L1MD2|LINE|L1 66213 NR_104215 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 242.333-5 chr17 80702670 80703354 + 0.666667 NA intron (NM_020761, intron 3 of 33) intron (NM_020761, intron 3 of 33) 102620 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 189-43 chr6 57009784 57010342 + 0.666667 NA 3' UTR (NM_001318539, exon 4 of 4) 3' UTR (NM_001318539, exon 4 of 4) -36469 NM_001286275 57691 Hs.709521 NM_020931 ENSG00000168116 KIAA1586 - KIAA1586 protein-coding 204.334-6 chr8 32012113 32012828 + 0.666667 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -13266 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 134-11 chr1 213226825 213227065 + 0.666667 NA intron (NM_001349662, intron 9 of 15) MIR|SINE|MIR 175704 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 204.167-27 chr5 43558938 43559445 + 0.666667 NA Intergenic Intergenic -1772 NM_183323 10605 Hs.482038 NM_006451 ENSG00000172239 PAIP1 - poly(A) binding protein interacting protein 1 protein-coding 318-5 chr14 67117129 67117755 + 0.666667 NA intron (NM_001024218, intron 15 of 21) intron (NM_001024218, intron 15 of 21) -71998 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 200.167-31 chr3 6375903 6376274 + 0.666667 NA Intergenic Intergenic 429361 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 169.333-53 chr4 52469093 52469481 + 0.666667 NA Intergenic L1MEf|LINE|L1 187252 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 157-63 chr5 8914587 8915135 + 0.666667 NA Intergenic L1MA9|LINE|L1 75129 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 223.167-11 chr8 28572951 28573601 + 0.666667 NA 3' UTR (NM_145866, exon 7 of 7) 3' UTR (NM_145866, exon 7 of 7) -68094 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 242.833-15 chr8 80766678 80767411 + 0.666667 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 107424 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 278.667-5 chr11 99534199 99534807 + 0.666667 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -21642 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 204.833-17 chr3 23931002 23931394 + 0.666667 NA Intergenic MER20B|DNA|hAT-Charlie 14066 NM_001253383 6138 Hs.381219 NM_002948 ENSG00000174748 RPL15 DBA12|EC45|L15|RPL10|RPLY10|RPYL10 ribosomal protein L15 protein-coding 181-25 chr16 7995853 7996326 + 0.666667 NA Intergenic MIR3|SINE|MIR 593749 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 130.167-22 chr16 10551590 10552011 + 0.666667 NA intron (NM_001424, intron 1 of 4) intron (NM_001424, intron 1 of 4) -23602 NR_149081 106144584 Hs.531561 NR_149081 ENSG00000260468 LINC01290 - long intergenic non-protein coding RNA 1290 ncRNA 151.5-65 chr6 139110077 139110616 + 0.666667 NA Intergenic Intergenic -24734 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 208.667-28 chr22 36099820 36100152 + 0.666667 NA Intergenic L1MB7|LINE|L1 60769 NM_014349 80833 Hs.474737 NM_014349 ENSG00000128284 APOL3 APOLIII|CG121|CG12_1|apoL-III apolipoprotein L3 protein-coding 121-39 chr17 68598527 68598856 + 0.666667 NA intron (NM_001243746, intron 1 of 11) intron (NM_001243746, intron 1 of 11) 2676 NM_001243746 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 150.333-6 chr1 179431839 179432113 + 0.666667 NA intron (NR_073544, intron 14 of 25) intron (NR_073544, intron 14 of 25) 65932 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 118.167-69 chr9 85700186 85700609 + 0.666667 NA intron (NM_001286717, intron 1 of 24) MLT1I|LTR|ERVL-MaLR 41632 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 138.833-58 chr3 197046519 197047062 + 0.666667 NA intron (NM_001366216, intron 23 of 23) AluJb|SINE|Alu -16973 NM_005929 4241 Hs.184727 NM_005929 ENSG00000163975 MELTF CD228|MAP97|MFI2|MTF1|MTf melanotransferrin protein-coding 113.167-40 chr2 208284666 208285055 + 0.666667 NA intron (NM_001178000, intron 5 of 11) AluJr|SINE|Alu 18593 NM_001178000 200576 Hs.744997 NM_015040 ENSG00000115020 PIKFYVE CFD|FAB1|HEL37|PIP5K|PIP5K3|ZFYVE29 phosphoinositide kinase, FYVE-type zinc finger containing protein-coding 118-123 chr9 97404287 97404613 + 0.666667 NA Intergenic L1M4|LINE|L1 -7646 NM_014290 23424 Hs.193842 NM_014290 ENSG00000196116 TDRD7 CATC4|PCTAIRE2BP|TRAP tudor domain containing 7 protein-coding 142.667-15 chr11 38843250 38843485 + 0.666667 NA Intergenic Intergenic 194509 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 224.833-11 chr3 4064479 4065080 + 0.666667 NA Intergenic MIR|SINE|MIR -238525 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 126.833-76 chr9 130257027 130257241 + 0.666667 NA Intergenic L1MB5|LINE|L1 -8626 NM_001291815 256158 Hs.32194 NM_144655 ENSG00000148357 HMCN2 - hemicentin 2 protein-coding 221-9 chr13 79099200 79099805 + 0.666667 NA Intergenic Intergenic -259452 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 132.667-8 chr1 230294270 230294509 + 0.666667 NA Intergenic AluJr|SINE|Alu 131943 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 156.333-77 chr6 27891316 27891667 + 0.666667 NA promoter-TSS (NM_003535) promoter-TSS (NM_003535) -699 NM_003535 8356 Hs.484990 NM_003535 ENSG00000197153 HIST1H3J H3/j|H3FJ histone cluster 1 H3 family member j protein-coding 127.5-25 chr14 77612573 77612788 + 0.666667 NA intron (NM_004863, intron 1 of 11) intron (NM_004863, intron 1 of 11) 4087 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 195.333-14 chr17 68994366 68994891 + 0.666667 NA intron (NM_080283, intron 26 of 38) L2|LINE|L2 -10086 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 126.5-78 chr7 44982987 44983500 + 0.666667 NA non-coding (NR_152597, exon 3 of 3) non-coding (NR_152597, exon 3 of 3) 2267 NR_002952 677798 Hs.744745 NR_002952 ENSG00000277184 SNORA9 ACA9|SNORA9A small nucleolar RNA, H/ACA box 9 snoRNA 177.667-9 chr11 27965615 27966027 + 0.666667 NA Intergenic Intergenic -90994 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 115.5-33 chr14 50782169 50782547 + 0.666667 NA intron (NM_016350, intron 5 of 28) L1ME4c|LINE|L1 -39439 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 261.667-14 chr14 66221653 66222338 + 0.666667 NA Intergenic Intergenic -264376 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 210.333-23 chr22 21823474 21823948 + 0.666667 NA intron (NM_002745, intron 1 of 8) intron (NM_002745, intron 1 of 8) 43969 NM_138957 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 156-46 chr2 214653615 214653962 + 0.666667 NA Intergenic AluSx3|SINE|Alu 143606 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 159.667-43 chr18 63744870 63745291 + 0.666667 NA Intergenic Intergenic -7967 NM_001040147 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 259.167-11 chr4 100133291 100133703 + 0.666667 NA Intergenic MIR|SINE|MIR -56536 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 148.333-97 chr8 15908567 15908870 + 0.666667 NA Intergenic Intergenic 277554 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 117.333-19 chr12 124244071 124244276 + 0.666667 NA intron (NM_001347902, intron 3 of 4) L1PA16|LINE|L1 -44991 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 127.667-65 chr4 78508063 78508387 + 0.666667 NA intron (NM_025074, intron 62 of 73) intron (NM_025074, intron 62 of 73) -43545 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 166.667-4 chr1 214515167 214515539 + 0.666667 NA intron (NM_005401, intron 1 of 18) L1M4|LINE|L1 36249 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 115.333-81 chr5 18017929 18018252 + 0.666667 NA Intergenic Intergenic 210816 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 166-56 chr6 160936224 160936516 + 0.666667 NA Intergenic L1M4|LINE|L1 -55357 NM_001301072 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 144-8 chr10 119408813 119409265 + 0.666667 NA intron (NM_005308, intron 4 of 15) intron (NM_005308, intron 4 of 15) 31067 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 116.333-21 chr11 16313682 16313912 + 0.666667 NA intron (NM_033326, intron 3 of 15) L2c|LINE|L2 42749 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 185.667-16 chr14 49714652 49715091 + 0.666667 NA intron (NM_172193, intron 4 of 12) (AT)n|Simple_repeat|Simple_repeat 21751 NM_172193 122773 Hs.509258 NM_172193 ENSG00000197776 KLHDC1 MST025 kelch domain containing 1 protein-coding 215.333-7 chr10 115959251 115959957 + 0.666667 NA Intergenic MLT1L|LTR|ERVL-MaLR 235185 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 147.5-71 chr4 105694887 105695421 + 0.666667 NA intron (NM_001142471, intron 3 of 6) AluJb|SINE|Alu 13535 NM_020395 57117 Hs.480454 NM_020395 ENSG00000138785 INTS12 INT12|PHF22|SBBI22 integrator complex subunit 12 protein-coding 165.5-53 chr6 74166307 74166713 + 0.666667 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 97059 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 152.333-45 chr4 27793129 27793422 + 0.666667 NA Intergenic L1PB4|LINE|L1 575796 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 124-95 chr8 82805784 82806178 + 0.666667 NA Intergenic Intergenic -106123 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 117.333-5 chr1 67252608 67252938 + 0.666667 NA intron (NM_144701, intron 9 of 10) MER57A1|LTR|ERV1 -54591 NM_001258215 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 252-6 chr16 66450103 66450594 + 0.666667 NA intron (NM_001178020, intron 2 of 4) intron (NM_001178020, intron 2 of 4) 23053 NM_001197224 146227 Hs.97805 NM_001136106 ENSG00000166546 BEAN1 BEAN|SCA31 brain expressed associated with NEDD4 1 protein-coding 198.5-8 chr14 56985239 56985667 + 0.666667 NA Intergenic Intergenic 172295 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 167-50 chr5 161815076 161815398 + 0.666667 NA Intergenic Intergenic -31954 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 125-89 chr7 137883008 137883338 + 0.666667 NA intron (NM_001318246, intron 10 of 11) intron (NM_001318246, intron 10 of 11) -36309 NM_004717 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 138.333-24 chr12 123170395 123170718 + 0.666667 NA intron (NR_103517, intron 16 of 23) AluJb|SINE|Alu -60067 NM_001300801 57605 Hs.272759 NM_020845 ENSG00000090975 PITPNM2 NIR-3|NIR3|RDGB2|RDGBA2 phosphatidylinositol transfer protein membrane associated 2 protein-coding 149.333-63 chr3 85661424 85661832 + 0.666667 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) -64854 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 131.167-12 chr11 31632833 31633233 + 0.666667 NA intron (NM_001288725, intron 7 of 10) intron (NM_001288725, intron 7 of 10) 123266 NM_001288726 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 161-45 chr3 186598497 186598834 + 0.666667 NA Intergenic Intergenic -14395 NM_001354571 197 Hs.324746 NM_001622 ENSG00000145192 AHSG A2HS|AHS|APMR1|FETUA|HSGA alpha 2-HS glycoprotein protein-coding 228.667-3 chr1 112210682 112211253 + 0.666667 NA Intergenic L1MA3|LINE|L1 -185247 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 119.5-98 chr7 46502531 46502734 + 0.666667 NA Intergenic MIRc|SINE|MIR 194490 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 146.833-51 chr5 78472178 78472673 + 0.666667 NA intron (NR_110885, intron 7 of 7) intron (NR_110885, intron 7 of 7) 111808 NM_001290229 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 136.833-51 chr4 112779175 112779614 + 0.666667 NA intron (NM_001354269, intron 1 of 43) AluY|SINE|Alu -38603 NM_001354243 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 190-28 chr2 54411363 54411745 + 0.666667 NA Intergenic L2b|LINE|L2 -44773 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 296-8 chr15 38434110 38434691 + 0.666667 NA Intergenic L1PB4|LINE|L1 -19727 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 113.333-93 chr5 157226697 157226948 + 0.666667 NA intron (NM_005546, intron 6 of 16) AluSz|SINE|Alu -39301 NM_001291722 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 189.5-50 chr6 22985779 22986130 + 0.666667 NA Intergenic L1MDa|LINE|L1 -268030 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 137.667-44 chr18 1990470 1990828 + 0.666667 NA Intergenic L1ME1|LINE|L1 580856 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 146.667-29 chr13 95757786 95758337 + 0.666667 NA intron (NM_006260, intron 5 of 11) intron (NM_006260, intron 5 of 11) 80922 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 167.334-4 chr4 12386583 12387133 + 0.666667 NA Intergenic MLT2A1|LTR|ERVL 163407 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 113.167-75 chr8 17733988 17734471 + 0.666667 NA intron (NM_001363057, intron 3 of 14) intron (NM_001363057, intron 3 of 14) -11654 NM_001166393 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 127.333-112 chr8 79664396 79664734 + 0.666667 NA intron (NM_001199214, intron 5 of 5) intron (NM_001199214, intron 5 of 5) 53448 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 143-18 chr12 41530453 41530786 + 0.666667 NA intron (NM_001164595, intron 5 of 9) L1ME3E|LINE|L1 92880 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 124.667-27 chr12 103587244 103587447 + 0.666667 NA promoter-TSS (NM_017564) promoter-TSS (NM_017564) 72 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 134.333-5 chr1 182161503 182161896 + 0.666667 NA Intergenic Intergenic -99987 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 128.333-64 chr2 84703209 84703484 + 0.666667 NA intron (NM_001370, intron 49 of 76) intron (NM_001370, intron 49 of 76) 177738 NM_001307978 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 131-39 chr3 94753919 94754257 + 0.666667 NA Intergenic Intergenic -184175 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 183.333-51 chr6 55822405 55822848 + 0.666667 NA intron (NM_001329754, intron 1 of 5) intron (NM_001329754, intron 1 of 5) 52964 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 114.333-81 chr21 26075184 26075615 + 0.666667 NA intron (NM_001136131, intron 3 of 15) intron (NM_001136131, intron 3 of 15) 64991 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 148.667-60 chr5 31742731 31743076 + 0.666667 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 103772 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 182-38 chr4 110133355 110133879 + 0.666667 NA intron (NM_001130721, intron 2 of 4) intron (NM_001130721, intron 2 of 4) 64998 NM_001130721 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 155.833 chr1 43319085 43319504 + 0.666667 NA exon (NM_005424, exon 18 of 23) exon (NM_005424, exon 18 of 23) 18312 NM_001253357 7075 Hs.78824 NM_005424 ENSG00000066056 TIE1 JTK14|TIE tyrosine kinase with immunoglobulin like and EGF like domains 1 protein-coding 199.667-27 chr2 125636637 125637079 + 0.666667 NA Intergenic LOR1b|LTR|ERV1 481127 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 164-48 chr4 172477438 172477781 + 0.666667 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 211308 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 148.333-60 chr3 54832753 54833131 + 0.666667 NA intron (NM_018398, intron 14 of 37) intron (NM_018398, intron 14 of 37) 68313 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 123.167-40 chr17 65339461 65339969 + 0.666667 NA Intergenic MIRb|SINE|MIR -117826 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 121.5-65 chr3 45342355 45342601 + 0.666667 NA Intergenic Intergenic -46098 NM_001368263 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 121.833-2 chr1 103563523 103563705 + 0.666667 NA intron (NM_020978, intron 1 of 11) intron (NM_020978, intron 1 of 11) -5790 NR_024438 648740 Hs.721681 NR_024438 ACTG1P4 ACTGP4 actin gamma 1 pseudogene 4 pseudo 124.833-51 chr2 218062629 218062917 + 0.666667 NA intron (NR_034176, intron 3 of 13) intron (NR_034176, intron 3 of 13) -1483 NR_002712 3580 Hs.647858 NR_002712 CXCR2P1 CXCR2P|IL8RBP C-X-C motif chemokine receptor 2 pseudogene 1 pseudo 128-73 chr5 94042703 94043224 + 0.666667 NA intron (NR_028080, intron 3 of 8) MER41-int|LTR|ERV1 68700 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 215.667-51 chr8 137432113 137432629 + 0.666667 NA Intergenic L2b|LINE|L2 -18783 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 144.333-4 chr1 50782893 50783250 + 0.666667 NA intron (NM_007051, intron 4 of 18) L1MB1|LINE|L1 177196 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 146.167-23 chr16 25583934 25584369 + 0.666667 NA Intergenic LTR19A|LTR|ERV1 -107808 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 155.667-7 chr1 186705699 186706194 + 0.666667 NA Intergenic Intergenic 25292 NR_125801 103752588 Hs.441636 NR_125801 ENSG00000273129 PACERR PACER|PTGS2-AS1|PTGS2AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 211.167-8 chr14 45589452 45589871 + 0.666667 NA Intergenic Intergenic 125941 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 164.833-35 chr3 187819698 187820044 + 0.666667 NA Intergenic Intergenic -74403 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 117.667-120 chr8 73672113 73672374 + 0.666667 NA intron (NM_001164383, intron 1 of 9) L1ME3|LINE|L1 74597 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 145-68 chr5 73417662 73417978 + 0.666667 NA Intergenic Intergenic 30957 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 144.833-58 chr5 25175599 25175827 + 0.666667 NA intron (NR_147006, intron 1 of 4) L1PA8A|LINE|L1 14943 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 176.667-58 chr4 67074160 67074586 + 0.666667 NA Intergenic LTR16D|LTR|ERVL 347627 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 156-21 chr13 27474844 27475236 + 0.666667 NA Intergenic Intergenic -24438 NM_152912 219402 Hs.534582 NM_152912 ENSG00000122033 MTIF3 IF3mt mitochondrial translational initiation factor 3 protein-coding 239.333-3 chr10 56106424 56106896 + 0.666667 NA Intergenic L1MA5|LINE|L1 254599 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 226.5-31 chr7 33369345 33369741 + 0.666667 NA intron (NM_198428, intron 17 of 22) intron (NM_198428, intron 17 of 22) 239979 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 144.167-11 chr10 43813352 43813628 + 0.666667 NA Intergenic L1ME3Cz|LINE|L1 -23073 NR_002726 10151 Hs.632956 NR_002726 HNRNPA3P1 D10S102|FBRNP|HNRPA3|HNRPA3P1 heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 pseudo 139.667-95 chr8 129253494 129253803 + 0.666667 NA Intergenic Intergenic -12408 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 131.333-5 chr10 18942065 18942449 + 0.666667 NA Intergenic Intergenic -106544 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 221-2 chr1 189867433 189868051 + 0.666667 NA Intergenic Intergenic 608268 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 141-85 chr8 75687444 75687904 + 0.666667 NA Intergenic Intergenic 147706 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 128.667-14 chr10 22627919 22628330 + 0.666667 NA intron (NM_005028, intron 1 of 9) intron (NM_005028, intron 1 of 9) 85984 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 221.333-14 chr2 163935828 163936266 + 0.666667 NA Intergenic Intergenic -200039 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 128.833-50 chr20 56768878 56769183 + 0.666667 NA Intergenic AluSx1|SINE|Alu 139724 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 137.667-92 chr8 98612063 98612446 + 0.666667 NA intron (NM_001256313, intron 4 of 8) L1MDa|LINE|L1 185296 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 117.167-83 chr6 74658756 74659125 + 0.666667 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 469842 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 113.333-2 chr1 46270561 46270886 + 0.666667 NA exon (NM_001370766, exon 10 of 18) exon (NM_001370766, exon 10 of 18) 22960 NM_003579 8438 Hs.642042 NM_003579 ENSG00000085999 RAD54L HR54|RAD54A|hHR54|hRAD54 RAD54 like protein-coding 142.333-4 chr1 97145184 97145481 + 0.666667 NA intron (NM_000110, intron 20 of 22) intron (NM_000110, intron 20 of 22) 49409 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 202.333-47 chr8 47863343 47863762 + 0.666667 NA exon (NM_006904, exon 42 of 86) exon (NM_006904, exon 42 of 86) 96584 NM_001081640 5591 Hs.491682 NM_006904 ENSG00000253729 PRKDC DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350 protein kinase, DNA-activated, catalytic subunit protein-coding 145.5-35 chr2 72284348 72284800 + 0.666667 NA intron (NR_135773, intron 19 of 21) L1MC1|LINE|L1 -136712 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 128.667-8 chr1 187272053 187272428 + 0.666667 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) -171388 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 156.167-36 chr2 209916940 209917282 + 0.666667 NA intron (NM_032504, intron 30 of 63) intron (NM_032504, intron 30 of 63) -85454 NM_001278286 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 236.333-16 chr2 171780153 171780712 + 0.666667 NA Intergenic AluJr|SINE|Alu 92677 NM_001271789 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 227.333-19 chr2 85769227 85769602 + 0.666667 NA intron (NM_032827, intron 2 of 2) intron (NM_032827, intron 2 of 2) 14263 NR_106719 102466516 NR_106719 ENSG00000278783 MIR6071 hsa-mir-6071 microRNA 6071 ncRNA 143.333-97 chr8 135797376 135797629 + 0.666667 NA Intergenic Intergenic 340046 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 232.667-26 chr6 93226785 93227264 + 0.666667 NA Intergenic Intergenic 192535 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 148.167-6 chr10 227775 228056 + 0.666667 NA intron (NM_001370102, intron 4 of 14) intron (NM_001370102, intron 4 of 14) 47921 NM_001202467 10771 Hs.292265 NM_006624 ENSG00000015171 ZMYND11 BRAM1|BS69|MRD30 zinc finger MYND-type containing 11 protein-coding 222.667-4 chr10 21085237 21085785 + 0.666667 NA intron (NM_001173484, intron 2 of 6) AluJr|SINE|Alu -88479 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 141.333-24 chr13 32222074 32222321 + 0.666667 NA intron (NM_023037, intron 36 of 60) L2a|LINE|L2 89757 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1 like protein-coding 133.5-31 chr18 13111059 13111371 + 0.666667 NA intron (NM_032142, intron 40 of 44) AluSc8|SINE|Alu -107545 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 124.667-109 chr6 52352517 52352773 + 0.666667 NA Intergenic Intergenic -9506 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 201.5-6 chr12 3813569 3813938 + 0.666667 NA intron (NM_020367, intron 7 of 7) intron (NM_020367, intron 7 of 7) 59646 NM_001286522 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 134.333-97 chr6 145861976 145862426 + 0.666667 NA intron (NR_038246, intron 2 of 2) AluYc|SINE|Alu 47325 NR_038244 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 118-8 chr1 165627694 165627923 + 0.666667 NA Intergenic Intergenic -3426 NM_004528 4259 Hs.191734 NM_004528 ENSG00000143198 MGST3 GST-III microsomal glutathione S-transferase 3 protein-coding 142.333-25 chr12 43943209 43943577 + 0.666667 NA intron (NM_001286213, intron 2 of 6) intron (NM_001286213, intron 2 of 6) 107312 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 243-20 chr3 4270071 4270435 + 0.666667 NA Intergenic Intergenic -33051 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 167-54 chr6 146742045 146742338 + 0.666667 NA intron (NM_024694, intron 25 of 35) intron (NM_024694, intron 25 of 35) 61633 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 158.667-85 chr7 49524009 49524305 + 0.666667 NA Intergenic Intergenic -249481 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 157.667-7 chr1 183448781 183449203 + 0.666667 NA Intergenic L1ME3Cz|LINE|L1 22990 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 141.167-56 chr4 81629172 81629573 + 0.666667 NA Intergenic Intergenic -157465 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 132.667-58 chr21 20402456 20402852 + 0.666667 NA Intergenic Intergenic -143969 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 158.5-81 chr8 51319114 51319693 + 0.666667 NA TTS (NM_144651) TTS (NM_144651) 490042 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 121.167-66 chr5 59322030 59322255 + 0.666667 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 34828 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 130.167-54 chr4 36964094 36964386 + 0.666667 NA Intergenic MER63A|DNA|hAT-Blackjack -37539 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 114.667-59 chr2 201181387 201181615 + 0.666667 NA Intergenic AluSz|SINE|Alu -1397 NM_032977 843 Hs.5353 NM_001230 ENSG00000003400 CASP10 ALPS2|FLICE2|MCH4 caspase 10 protein-coding 233.833-4 chr14 51275539 51276304 + 0.666667 NA Intergenic Intergenic 35674 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 171.667-44 chr20 34893561 34894036 + 0.666667 NA intron (NM_001076552, intron 2 of 18) intron (NM_001076552, intron 2 of 18) 17186 NM_018677 55902 Hs.517034 NM_018677 ENSG00000131069 ACSS2 ACAS2|ACECS|ACS|ACSA|dJ1161H23.1 acyl-CoA synthetase short chain family member 2 protein-coding 233.833-9 chr22 47130892 47131257 + 0.666667 NA intron (NM_001284305, intron 12 of 12) MSTB|LTR|ERVL-MaLR -214497 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 155.833-23 chr18 8995145 8995523 + 0.666667 NA Intergenic Intergenic -107365 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 122-86 chr8 51579789 51580001 + 0.666667 NA intron (NM_144651, intron 3 of 22) L1PA6|LINE|L1 229550 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 241.834-4 chr2 112537328 112538077 + 0.666667 NA 3' UTR (NM_153712, exon 7 of 7) 3' UTR (NM_153712, exon 7 of 7) -4213 NM_001282777 84172 Hs.745127 NM_019014 ENSG00000125630 POLR1B RPA135|RPA2|Rpo1-2 RNA polymerase I subunit B protein-coding 148.667-45 chr3 8089329 8089778 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR -73246 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 140-59 chr4 39775795 39776183 + 0.666667 NA intron (NM_001111112, intron 5 of 5) L2|LINE|L2 77853 NM_005339 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 151.333-7 chr10 43981552 43982115 + 0.666667 NA TTS (NR_136147) TTS (NR_136147) 69431 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 122.333-72 chr3 124162607 124162867 + 0.666667 NA non-coding (NR_028136, exon 3 of 3) non-coding (NR_028136, exon 3 of 3) 29808 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 200-33 chr2 28741587 28742027 + 0.666667 NA Intergenic L1PREC2|LINE|L1 -5602 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 177.333-63 chr8 75811091 75811575 + 0.666667 NA Intergenic Intergenic 271365 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 117.333-10 chr1 177360273 177360562 + 0.666667 NA intron (NR_126001, intron 2 of 3) intron (NR_126001, intron 2 of 3) 8831 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 127.333-41 chr16 27413156 27413389 + 0.666667 NA intron (NM_181079, intron 2 of 9) L1MA8|LINE|L1 11098 NM_181078 50615 Hs.210546 NM_021798 ENSG00000103522 IL21R CD360|IMD56|NILR interleukin 21 receptor protein-coding 198.667-31 chr20 43779233 43779605 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -52417 NM_176791 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 247 chr1 214113923 214114324 + 0.666667 NA Intergenic L2a|LINE|L2 125590 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 145.167-65 chr6 130438489 130438761 + 0.666667 NA 5' UTR (NM_052913, exon 1 of 2) 5' UTR (NM_052913, exon 1 of 2) 1508 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 127.667-99 chr8 125763699 125763933 + 0.666667 NA Intergenic L1MA4|LINE|L1 187381 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 116.667-40 chr15 71863410 71863613 + 0.666667 NA intron (NM_006901, intron 32 of 41) Charlie1a|DNA|hAT-Charlie 52957 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 140-32 chr17 59695472 59695732 + 0.666667 NA 3' UTR (NM_004859, exon 32 of 32) 3' UTR (NM_004859, exon 32 of 32) 11996 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 149.667-5 chr1 159038664 159039098 + 0.666667 NA intron (NM_005531, intron 7 of 10) intron (NM_005531, intron 7 of 10) 28974 NM_001206567 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 180.333-43 chr3 146287081 146287362 + 0.666667 NA Intergenic L1PA6|LINE|L1 -36042 NM_001128306 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 160.333-30 chr2 136653050 136653413 + 0.666667 NA Intergenic L2b|LINE|L2 -112314 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 117.667-96 chr5 8902250 8902578 + 0.666667 NA Intergenic Intergenic 62682 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 231.833-2 chr12 64364737 64365364 + 0.666667 NA intron (NM_001099676, intron 1 of 10) intron (NM_001099676, intron 1 of 10) 25708 NM_001170633 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 170.667-69 chr7 36326678 36327009 + 0.666667 NA exon (NM_001100425, exon 7 of 7) exon (NM_001100425, exon 7 of 7) 40397 NM_001300956 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 131.667-123 chr8 11897937 11898238 + 0.666667 NA Intergenic Intergenic -30000 NM_147783 1508 Hs.520898 NM_001908 ENSG00000164733 CTSB APPS|CPSB|RECEUP cathepsin B protein-coding 133.667-101 chr9 32130157 32130394 + 0.666667 NA Intergenic L1PA10|LINE|L1 -254328 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 118.333-86 chr4 151609269 151609457 + 0.666667 NA intron (NM_001109977, intron 7 of 13) intron (NM_001109977, intron 7 of 13) 151644 NM_004564 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 174.667-50 chr5 66254193 66254673 + 0.666667 NA Intergenic L2b|LINE|L2 -44987 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 207-52 chr8 119165649 119166157 + 0.666667 NA Intergenic MARNA|DNA|TcMar-Mariner -42460 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 172.667-74 chr7 88343668 88344136 + 0.666667 NA Intergenic AluSz|SINE|Alu -37008 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 121-73 chr5 153193437 153193677 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR -221208 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 199-36 chr8 81133360 81133734 + 0.666667 NA Intergenic Intergenic -21479 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 171.167-53 chr6 134287669 134288101 + 0.666667 NA intron (NM_001143676, intron 1 of 13) LTR64|LTR|ERV1 30173 NM_001143676 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 208.833-12 chr13 114187932 114188353 + 0.666667 NA Intergenic AluJo|SINE|Alu -46703 NM_001318517 8881 Hs.374127 NM_003903 ENSG00000130177 CDC16 ANAPC6|APC6|CDC16Hs|CUT9 cell division cycle 16 protein-coding 143.167-67 chr5 75951593 75951909 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -131632 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 158.667-66 chr4 122959977 122960388 + 0.666667 NA intron (NM_001317799, intron 9 of 10) intron (NM_001317799, intron 9 of 10) 37104 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 122.667-41 chr2 53772499 53772784 + 0.666667 NA intron (NM_001346127, intron 2 of 2) intron (NM_001346127, intron 2 of 2) 4837 NM_001008708 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 189.333-46 chr5 120355335 120355734 + 0.666667 NA Intergenic Intergenic -108744 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 219-20 chr3 168668230 168668769 + 0.666667 NA intron (NR_021485, intron 5 of 15) intron (NR_021485, intron 5 of 15) 116645 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 158.5-85 chr8 123629135 123629591 + 0.666667 NA Intergenic MLT1K|LTR|ERVL-MaLR 24438 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 116-24 chr14 54832525 54832834 + 0.666667 NA Intergenic L1PA16|LINE|L1 45514 NR_036194 100422984 NR_036194 ENSG00000265432 MIR4308 - microRNA 4308 ncRNA 187-31 chr4 120810954 120811490 + 0.666667 NA intron (NM_001300824, intron 7 of 13) intron (NM_001300824, intron 7 of 13) 111644 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 193.5-50 chr6 61046458 61046822 + 0.666667 NA Intergenic Intergenic -527490 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 179.667-46 chr6 112624563 112624968 + 0.666667 NA Intergenic AluSz|SINE|Alu 277435 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 114.333-74 chr2 210329368 210329610 + 0.666667 NA intron (NR_110606, intron 1 of 4) L1M2|LINE|L1 4777 NR_110606 102724820 Hs.659232 NR_110604 LANCL1-AS1 LANCLOT LANCL1 antisense RNA 1 ncRNA 132.333-87 chr5 110661251 110661587 + 0.666667 NA intron (NM_001039763, intron 2 of 13) AluJb|SINE|Alu 65252 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 156.5-81 chr7 108257244 108257747 + 0.666667 NA intron (NM_001371133, intron 3 of 28) intron (NM_001371133, intron 3 of 28) -14110 NM_001371182 117-62 chr20 36951783 36952025 + 0.666667 NA promoter-TSS (NM_001363733) promoter-TSS (NM_001363733) -61 NM_015474 25939 Hs.580681 NM_015474 ENSG00000101347 SAMHD1 CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 protein-coding 165-60 chr8 107105848 107106269 + 0.666667 NA Intergenic L2c|LINE|L2 230457 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 159.333-38 chr2 143641399 143641845 + 0.666667 NA intron (NM_018460, intron 12 of 13) intron (NM_018460, intron 12 of 13) -295445 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 131-69 chr8 13911025 13911548 + 0.666667 NA Intergenic Intergenic 281596 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 137.667-72 chr4 14882704 14882924 + 0.666667 NA intron (NR_126435, intron 1 of 6) AluSc8|SINE|Alu 5355 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 134-73 chr3 94403849 94404242 + 0.666667 NA Intergenic L1MA7|LINE|L1 340984 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 153.5-23 chr15 84644122 84644391 + 0.666667 NA intron (NM_032856, intron 7 of 7) L2|LINE|L2 9990 NR_130944 84942 Hs.745027 NM_032856 ENSG00000177082 WDR73 GAMOS|GAMOS1|HSPC264 WD repeat domain 73 protein-coding 128.5-14 chr11 25113818 25114206 + 0.666667 NA Intergenic L1MC4a|LINE|L1 616959 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 204.333-60 chr9 42386490 42386865 + 0.666667 NA Intergenic Intergenic 182672 NR_126050 103908605 Hs.721139 NR_126050 LOC103908605 - uncharacterized LOC103908605 ncRNA 155-46 chr22 30024728 30025023 + 0.666667 NA intron (NM_153050, intron 19 of 19) intron (NM_153050, intron 19 of 19) 17826 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 190.833-29 chr4 10204798 10205140 + 0.666667 NA Intergenic Intergenic -88170 NM_005112 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 115-50 chr3 24866938 24867163 + 0.666667 NA intron (NM_001290216, intron 2 of 10) LTR8A|LTR|ERV1 37727 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 203.167-9 chr11 45330258 45330873 + 0.666667 NA Intergenic MIRb|SINE|MIR -24806 NR_120557 101928812 Hs.444059 NR_120557 ENSG00000254427 LINC02696 - long intergenic non-protein coding RNA 2696 ncRNA 119.333-84 chr5 59869844 59870054 + 0.666667 NA intron (NM_001165899, intron 3 of 16) L4_B_Mam|LINE|RTE-X 23777 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 139.333-70 chr4 122345586 122345892 + 0.666667 NA intron (NM_015312, intron 72 of 83) L2c|LINE|L2 -33272 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 200.333-6 chr11 16753504 16753969 + 0.666667 NA intron (NM_014267, intron 4 of 4) intron (NM_014267, intron 4 of 4) 15089 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 141.5-15 chr11 112020907 112021160 + 0.666667 NA 3' UTR (NM_033425, exon 16 of 16) 3' UTR (NM_033425, exon 16 of 16) -3781 NM_001931 1737 Hs.335551 NM_001931 ENSG00000150768 DLAT DLTA|E2|PDC-E2|PDCE2 dihydrolipoamide S-acetyltransferase protein-coding 176.167-46 chr8 111318822 111319151 + 0.666667 NA Intergenic Intergenic -57653 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 178.333-16 chr14 54734490 54734843 + 0.666667 NA intron (NM_001161576, intron 2 of 10) intron (NM_001161576, intron 2 of 10) -20167 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 162-50 chr4 68178735 68179143 + 0.666667 NA Intergenic Intergenic -3353 NR_015446 100130017 Hs.582037 NR_015446 ENSG00000250426 FTLP10 - ferritin light chain pseudogene 10 pseudo 113.333-97 chr7 20706372 20706570 + 0.666667 NA intron (NM_178559, intron 11 of 18) intron (NM_178559, intron 11 of 18) 59141 NM_001163993 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 128.333-28 chr13 21725467 21725768 + 0.666667 NA Intergenic MIRb|SINE|MIR 54544 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 185.333-10 chr12 13332541 13332944 + 0.666667 NA Intergenic Tigger2a|DNA|TcMar-Tigger 44003 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 171.167-63 chr9 91901874 91902459 + 0.666667 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 48062 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 136.5-32 chr14 41080636 41081086 + 0.666667 NA intron (NR_109758, intron 3 of 3) intron (NR_109758, intron 3 of 3) 126150 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 134.333-82 chr4 30964585 30964874 + 0.666667 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -206415 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 137.333-109 chr9 27049171 27049709 + 0.666667 NA intron (NM_025103, intron 16 of 19) MER67B|LTR|ERV1 -43768 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 134.5-9 chr1 209942720 209943041 + 0.666667 NA intron (NM_153262, intron 1 of 7) L3b|LINE|CR1 4663 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 172-18 chr12 131150534 131151032 + 0.666667 NA Intergenic L1MCa|LINE|L1 -14228 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 159.333-75 chrX 48077321 48077602 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie -5803 NM_001282201 57232 Hs.650883 NM_001037735 ENSG00000221994 ZNF630 dJ54B20.2 zinc finger protein 630 protein-coding 177.167-35 chr4 118294213 118294493 + 0.666667 NA intron (NM_003619, intron 11 of 12) intron (NM_003619, intron 11 of 12) 15163 NR_002963 677809 Hs.744742 NR_002963 ENSG00000275994 SNORA24 ACA24|SNORA24A small nucleolar RNA, H/ACA box 24 snoRNA 218.167-3 chr10 63707684 63708264 + 0.666667 NA Intergenic Intergenic -186084 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 171.167-46 chr5 36195168 36195635 + 0.666667 NA intron (NM_001085411, intron 11 of 11) intron (NM_001085411, intron 11 of 11) 43290 NM_032637 6502 Hs.23348 NM_005983 ENSG00000145604 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase associated protein 2 protein-coding 138.167-75 chr8 49070037 49070592 + 0.666667 NA intron (NM_001256596, intron 1 of 4) L1PA13|LINE|L1 -2030 NM_001256598 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 151-10 chr11 84694080 84694424 + 0.666667 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 26690 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 113.333-27 chr12 25101464 25101811 + 0.666667 NA intron (NR_159367, intron 15 of 19) intron (NR_159367, intron 15 of 19) 48931 NM_006152 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 296.5-2 chr11 88484364 88485010 + 0.666667 NA Intergenic L1P4d|LINE|L1 -19889 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 219.667-3 chr10 67308659 67309062 + 0.666667 NA intron (NM_001127384, intron 5 of 17) MIR3|SINE|MIR 94550 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 158.667-20 chr12 13592076 13592409 + 0.666667 NA intron (NM_000834, intron 9 of 12) MER83B|LTR|ERV1 -215497 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 136.167-59 chr4 52123893 52124156 + 0.666667 NA Intergenic L1MEc|LINE|L1 72720 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 128-33 chr16 3113821 3114258 + 0.666667 NA intron (NM_003456, intron 2 of 6) MIRc|SINE|MIR 1453 NM_003456 7755 Hs.592088 NM_003456 ENSG00000122386 ZNF205 RhitH|ZNF210|Zfp13 zinc finger protein 205 protein-coding 118.167-66 chr8 137657367 137657716 + 0.666667 NA Intergenic Intergenic -243953 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 127-60 chr21 35864484 35864765 + 0.666667 NA Intergenic Intergenic -21821 NR_144547 54036 Hs.228809 NR_144547 PPP1R2P2 - protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2 pseudo 186.333-59 chrX 30380611 30380964 + 0.666667 NA Intergenic THE1C|LTR|ERVL-MaLR -71397 NM_000475 190 Hs.268490 NM_000475 ENSG00000169297 NR0B1 AHC|AHCH|AHX|DAX-1|DAX1|DSS|GTD|HHG|NROB1|SRXY2 nuclear receptor subfamily 0 group B member 1 protein-coding 125.833-11 chr10 76470099 76470436 + 0.666667 NA intron (NM_001305581, intron 6 of 6) L1MB8|LINE|L1 -417777 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 120.333-112 chr7 48083600 48084024 + 0.666667 NA Intergenic MER4E1|LTR|ERV1 -4791 NM_001287428 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 239.667-10 chr14 67766351 67767012 + 0.666667 NA intron (NM_015346, intron 31 of 41) intron (NM_015346, intron 31 of 41) 49909 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 177.5-20 chr12 117018262 117018705 + 0.666667 NA intron (NM_153348, intron 8 of 10) intron (NM_153348, intron 8 of 10) -31146 NR_103809 100506551 Hs.657861 NR_103809 ENSG00000257279 LOC100506551 - uncharacterized LOC100506551 ncRNA 142.333-96 chr8 61397079 61397442 + 0.666667 NA intron (NM_173519, intron 3 of 5) L1MB8|LINE|L1 109290 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 163.833-32 chr2 146359869 146360172 + 0.666667 NA Intergenic Intergenic -227037 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 177.833-14 chr16 79650877 79651462 + 0.666667 NA Intergenic Intergenic -50432 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 193.667-11 chr14 27551778 27552283 + 0.666667 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -60558 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 177.333-32 chr2 17113359 17113771 + 0.666667 NA Intergenic Intergenic 404875 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 151.167-55 chr8 89834514 89834849 + 0.666667 NA Intergenic L1MB2|LINE|L1 -67187 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 173.5-53 chr7 38473984 38474410 + 0.666667 NA intron (NM_001635, intron 7 of 20) intron (NM_001635, intron 7 of 20) 132620 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 134.333-106 chr9 70639938 70640266 + 0.666667 NA intron (NM_001366143, intron 10 of 25) intron (NM_001366143, intron 10 of 25) 169982 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 137.5-18 chr10 114785979 114786385 + 0.666667 NA Intergenic L1MD|LINE|L1 -17878 NM_001322885 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 125.667-94 chr5 23204016 23204287 + 0.666667 NA Intergenic Intergenic -303458 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 220.5-16 chr2 85766769 85767297 + 0.666667 NA intron (NM_032827, intron 2 of 2) intron (NM_032827, intron 2 of 2) 13042 NM_032827 84913 Hs.135569 NM_032827 ENSG00000168874 ATOH8 HATH6|bHLHa21 atonal bHLH transcription factor 8 protein-coding 243.667-29 chr5 53437397 53437860 + 0.666667 NA Intergenic Intergenic -43001 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 154.833-50 chr6 36262494 36262948 + 0.666667 NA intron (NM_173676, intron 1 of 7) L1ME4b|LINE|L1 -7739 NM_001145717 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 134-23 chr10 127475580 127475921 + 0.666667 NA Intergenic Intergenic -73599 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 309-4 chr14 67417363 67417973 + 0.666667 NA Intergenic AluJb|SINE|Alu -5503 NM_016445 26499 Hs.170473 NM_016445 ENSG00000100558 PLEK2 - pleckstrin 2 protein-coding 264-6 chr2 25994721 25995381 + 0.666667 NA Intergenic Intergenic -12554 NM_002254 3797 Hs.21611 NM_002254 ENSG00000084731 KIF3C - kinesin family member 3C protein-coding 118.667-58 chr2 50477514 50477854 + 0.666667 NA intron (NM_001330093, intron 15 of 22) intron (NM_001330093, intron 15 of 22) -129928 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 153-44 chr4 118171575 118171863 + 0.666667 NA intron (NM_004784, intron 6 of 13) intron (NM_004784, intron 6 of 13) -107043 NR_034010 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 120.333-97 chr5 117743418 117743691 + 0.666667 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 13193 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 134-39 chr14 38565416 38565812 + 0.666667 NA Intergenic LTR49-int|LTR|ERV1 -309521 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 214-50 chr8 121299484 121299960 + 0.666667 NA Intergenic Intergenic -339624 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 206.333-28 chr6 150778914 150779401 + 0.666667 NA intron (NM_001329803, intron 3 of 13) MIR3|SINE|MIR 58058 NM_001329801 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 131.667-64 chr2 208202950 208203290 + 0.666667 NA Intergenic AluJb|SINE|Alu -13090 NM_001099334 389073 Hs.198416 NM_001099334 ENSG00000188674 C2orf80 GONDA1 chromosome 2 open reading frame 80 protein-coding 149.333-98 chr8 127194964 127195273 + 0.666667 NA intron (NR_120364, intron 1 of 2) L1ME3Cz|LINE|L1 2509 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 121.5-30 chr13 26670614 26670836 + 0.666667 NA intron (NM_006646, intron 5 of 9) intron (NM_006646, intron 5 of 9) 90061 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 189.667-37 chr4 38791697 38792231 + 0.666667 NA Intergenic Intergenic -8974 NM_030956 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 134.5-3 chr1 57101275 57101751 + 0.666667 NA intron (NM_001365793, intron 4 of 14) intron (NM_001365793, intron 4 of 14) -135373 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 134.167-62 chr4 54578453 54578741 + 0.666667 NA Intergenic Intergenic 28534 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 156-98 chrX 89012171 89012521 + 0.666667 NA Intergenic Intergenic 265121 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 192.5-10 chr12 41607035 41607576 + 0.666667 NA Intergenic Intergenic -156884 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 126.333-80 chr4 41581668 41582149 + 0.666667 NA intron (NM_001330786, intron 1 of 22) L1MA9|LINE|L1 -30801 NM_001112719 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 155.667-14 chr10 62240253 62240646 + 0.666667 NA intron (NM_001282941, intron 4 of 4) intron (NM_001282941, intron 4 of 4) 28395 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 184.167-50 chr9 76823130 76823465 + 0.666667 NA intron (NM_001308048, intron 6 of 17) intron (NM_001308048, intron 6 of 17) 58861 NR_015342 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 164.833-31 chr3 20717629 20717911 + 0.666667 NA Intergenic Intergenic 375302 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 142.333-7 chr1 112991124 112991465 + 0.666667 NA Intergenic Intergenic 34879 NR_103744 100506392 Hs.418285 NR_103743 ENSG00000226419 SLC16A1-AS1 - SLC16A1 antisense RNA 1 ncRNA 181-19 chr12 116467195 116467484 + 0.666667 NA Intergenic Intergenic -39021 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 130.333-92 chr8 81733744 81734030 + 0.666667 NA intron (NM_152284, intron 1 of 4) intron (NM_152284, intron 1 of 4) 1439 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 201.667-9 chr12 17313345 17313817 + 0.666667 NA Intergenic Intergenic 275497 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 138-24 chr12 48302657 48302992 + 0.666667 NA Intergenic MER51B|LTR|ERV1 -26156 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 114.667-73 chr3 28301929 28302425 + 0.666667 NA intron (NM_001331186, intron 3 of 4) intron (NM_001331186, intron 3 of 4) -46544 NM_001040432 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 143-7 chr1 224939079 224939335 + 0.666667 NA intron (NM_001349912, intron 1 of 5) L1MA4A|LINE|L1 9532 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 162.667-30 chr17 58770069 58770473 + 0.666667 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 14402 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 157-38 chr2 63879328 63879615 + 0.666667 NA intron (NM_001001521, intron 3 of 9) intron (NM_001001521, intron 3 of 9) 37591 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 225.667-6 chr13 80925012 80925494 + 0.666667 NA Intergenic Intergenic -93138 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 189.5-51 chr6 56903992 56904614 + 0.666667 NA intron (NM_001144769, intron 2 of 96) intron (NM_001144769, intron 2 of 96) 50527 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 259.833-6 chr2 25349508 25350126 + 0.666667 NA Intergenic Intergenic -7227 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 150.667-19 chr11 89453148 89453430 + 0.666667 NA intron (NM_001291929, intron 1 of 16) L1MA7|LINE|L1 37471 NM_001291929 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 154-24 chr14 60271879 60272184 + 0.666667 NA intron (NM_177951, intron 2 of 3) intron (NM_177951, intron 2 of 3) 22810 NM_177951 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 138-48 chr2 1923867 1924166 + 0.666667 NA intron (NM_015025, intron 9 of 24) intron (NM_015025, intron 9 of 24) -179501 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 265.333-13 chr2 225753368 225754142 + 0.666667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 352869 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 115.667-23 chr12 18836940 18837287 + 0.666667 NA Intergenic Intergenic 98994 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 220-5 chr11 56876994 56877616 + 0.666667 NA non-coding (NR_110137, exon 3 of 3) non-coding (NR_110137, exon 3 of 3) 28827 NR_110137 101927120 Hs.472675 NR_110136 ENSG00000255433 LINC02735 - long intergenic non-protein coding RNA 2735 ncRNA 200-26 chr17 53969853 53970339 + 0.666667 NA Intergenic Intergenic 147169 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 146.167-12 chr13 42765649 42765937 + 0.666667 NA Intergenic Tigger13a|DNA|TcMar-Tigger -15757 NM_182508 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 167.5-18 chr11 99171609 99172019 + 0.666667 NA intron (NM_001243270, intron 1 of 23) UCON132b|DNA|hAT-Tip100 150865 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 166-16 chr11 125949571 125949883 + 0.666667 NA intron (NM_001365077, intron 3 of 11) intron (NM_001365077, intron 3 of 11) 3671 NM_001365077 338667 Hs.730137 NM_001365077 VSIG10L2 - V-set and immunoglobulin domain containing 10 like 2 protein-coding 289.5-15 chr8 101056009 101056753 + 0.666667 NA intron (NR_033962, intron 2 of 2) intron (NR_033962, intron 2 of 2) 4327 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 235-4 chr1 172213086 172213745 + 0.666667 NA intron (NR_146559, intron 15 of 20) L1ME3A|LINE|L1 -68580 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 190.333-55 chr8 56134951 56135295 + 0.666667 NA Intergenic L2a|LINE|L2 -21141 NM_005372 4342 Hs.533432 NM_005372 ENSG00000172680 MOS MSV MOS proto-oncogene, serine/threonine kinase protein-coding 124.667-10 chr10 6197338 6197560 + 0.666667 NA intron (NM_001282630, intron 1 of 14) Tigger3c|DNA|TcMar-Tigger -5483 NM_001323017 5209 Hs.195471 NM_004566 ENSG00000170525 PFKFB3 IPFK2|PFK2|iPFK-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 192.5-50 chr8 80116238 80116928 + 0.666667 NA intron (NM_001025253, intron 1 of 7) L1MB8|LINE|L1 -35752 NM_001287142 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 138.333-74 chr3 133873383 133873674 + 0.666667 NA intron (NM_016577, intron 1 of 7) intron (NM_016577, intron 1 of 7) 22319 NM_001363953 51560 Hs.715344 NM_016577 ENSG00000154917 RAB6B - RAB6B, member RAS oncogene family protein-coding 151.833-48 chr5 85702097 85702556 + 0.666667 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -580118 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 229-46 chr8 102516940 102517391 + 0.666667 NA Intergenic Intergenic -34424 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 135.333-62 chr5 42666578 42666977 + 0.666667 NA intron (NM_001242403, intron 3 of 9) MER5A1|DNA|hAT-Charlie -90041 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 146.5-56 chr3 106047338 106047645 + 0.666667 NA Intergenic MER65D|LTR|ERV1 -178090 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 116-93 chr7 108402910 108403240 + 0.666667 NA intron (NM_001371132, intron 1 of 30) intron (NM_001371132, intron 1 of 30) 53322 NM_001193582 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 142.167-37 chr2 42746169 42746465 + 0.666667 NA intron (NM_001330443, intron 16 of 16) intron (NM_001330443, intron 16 of 16) 17944 NM_148962 165140 Hs.168439 NM_148962 ENSG00000162881 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid receptor 1 protein-coding 156-77 chr6 121133035 121133360 + 0.666667 NA intron (NM_001367759, intron 26 of 33) intron (NM_001367759, intron 26 of 33) 201283 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 190-15 chr14 101218149 101218536 + 0.666667 NA Intergenic Intergenic 97486 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 162-65 chr6 139940456 139941046 + 0.666667 NA Intergenic Intergenic -35568 NR_121623 100507477 Hs.179213 NR_121622 ENSG00000236013 LOC100507477 - uncharacterized LOC100507477 ncRNA 134-64 chr2 143772319 143772614 + 0.666667 NA Intergenic MIR3|SINE|MIR -164601 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 247-13 chr22 28353069 28353779 + 0.666667 NA intron (NM_001145418, intron 2 of 22) L1MB4|LINE|L1 -106445 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 178.667-64 chr7 34825287 34825724 + 0.666667 NA intron (NM_207172, intron 4 of 8) intron (NM_207172, intron 4 of 8) 8826 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 138-62 chr2 239022139 239022367 + 0.666667 NA Intergenic Intergenic 46661 NR_039642 100616397 NR_039642 ENSG00000266109 MIR4440 mir-4440 microRNA 4440 ncRNA 150-16 chr13 55978680 55978964 + 0.666667 NA Intergenic Intergenic 804368 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 152.833-17 chr15 81178300 81178762 + 0.666667 NA Intergenic Intergenic -18348 NM_001352685 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 157-51 chr21 27745213 27745523 + 0.666667 NA intron (NR_024357, intron 2 of 3) intron (NR_024357, intron 2 of 3) 22989 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 114.5-23 chr12 32293484 32293655 + 0.666667 NA intron (NR_148725, intron 2 of 9) AluSx1|SINE|Alu -105989 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 194.667-41 chr3 96330163 96330746 + 0.666667 NA Intergenic MER21C|LTR|ERVL -29510 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 209.833-11 chr15 94864288 94864718 + 0.666667 NA Intergenic L1ME1|LINE|L1 9140 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 184.333-55 chr6 163702104 163702531 + 0.666667 NA Intergenic Intergenic -30833 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 116.833-55 chr6 60714167 60714528 + 0.666667 NA Intergenic Intergenic -859783 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 136.667-20 chr14 21263430 21263761 + 0.666667 NA intron (NM_031314, intron 1 of 8) A-rich|Low_complexity|Low_complexity 5884 NM_001077442 3183 Hs.508848 NM_004500 ENSG00000092199 HNRNPC C1|C2|HNRNP|HNRPC|SNRPC heterogeneous nuclear ribonucleoprotein C (C1/C2) protein-coding 157.334-6 chr5 140970226 140970783 + 0.666667 NA intron (NM_018899, intron 1 of 3) intron (NM_018899, intron 1 of 3) 3737 NM_031883 56134 Hs.199343 NM_018899 ENSG00000243232 PCDHAC2 PCDH-ALPHA-C2 protocadherin alpha subfamily C, 2 protein-coding 255.333-26 chr8 83006769 83007271 + 0.666667 NA Intergenic Intergenic 94916 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 125-53 chr3 31674298 31674555 + 0.666667 NA intron (NM_001174060, intron 7 of 10) AluJb|SINE|Alu -29787 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 138-105 chr8 86834899 86835402 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -31265 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 120.167-21 chr15 62250099 62250389 + 0.666667 NA Intergenic Intergenic -1449 NR_136885 255180 Hs.370479 NM_173805 GOLGA2P11 - GOLGA2 pseudogene 11 pseudo 138.833-26 chr16 9176134 9176705 + 0.666667 NA Intergenic AluSx|SINE|Alu 84775 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 231.833-10 chr20 57903708 57904162 + 0.666667 NA Intergenic Intergenic -99969 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 181.333-31 chr2 134073834 134074255 + 0.666667 NA Intergenic AluJb|SINE|Alu -45891 NM_001371457 138-63 chr20 9579632 9579862 + 0.666667 NA intron (NM_020341, intron 5 of 10) intron (NM_020341, intron 5 of 10) -64749 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 210-29 chr5 4911678 4912288 + 0.666667 NA Intergenic Intergenic -122376 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 169.333-61 chr6 102341131 102341414 + 0.666667 NA Intergenic Intergenic 942287 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 136.167-44 chr2 228646469 228646767 + 0.666667 NA Intergenic Intergenic -35223 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 139.167-5 chr1 231182083 231182531 + 0.666667 NA intron (NM_001300889, intron 3 of 11) L2c|LINE|L2 5320 NM_001256615 149373 Hs.632505 NM_001256615 ENSG00000235710 LOC149373 - uncharacterized LOC149373 protein-coding 214-14 chr15 59938414 59938794 + 0.666667 NA Intergenic Intergenic -65707 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 130.167-15 chr12 16530615 16531006 + 0.666667 NA Intergenic Intergenic 74569 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 187.5-6 chr11 43734404 43734907 + 0.666667 NA intron (NM_016142, intron 1 of 10) intron (NM_016142, intron 1 of 10) 53917 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 148.667-44 chr22 41190900 41191255 + 0.666667 NA intron (NR_110514, intron 2 of 2) intron (NR_110514, intron 2 of 2) 6424 NR_110514 101927279 Hs.517517 NR_110514 EP300-AS1 - EP300 antisense RNA 1 ncRNA 237.5-23 chr5 71625806 71626279 + 0.666667 NA intron (NM_001363147, intron 6 of 15) L1MC5a|LINE|L1 38702 NM_022132 64087 Hs.604789 NM_022132 ENSG00000131844 MCCC2 MCCB methylcrotonoyl-CoA carboxylase 2 protein-coding 134.167-26 chr14 96680932 96681343 + 0.666667 NA Intergenic Intergenic -60054 NR_146552 105370646 NR_146552 ENSG00000258979 LINC02299 - long intergenic non-protein coding RNA 2299 ncRNA 221-26 chr6 121938322 121938971 + 0.666667 NA Intergenic L1M4|LINE|L1 -460905 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 130.5-28 chr15 95686213 95686533 + 0.666667 NA Intergenic L1MC|LINE|L1 253280 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 190-32 chr2 153581236 153581659 + 0.666667 NA Intergenic Intergenic -102685 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 156-48 chr21 27055551 27055810 + 0.666667 NA Intergenic HERVL-int|LTR|ERVL -88592 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 234-35 chr7 44841378 44842170 + 0.666667 NA intron (NM_201436, intron 1 of 3) intron (NM_201436, intron 1 of 3) 6352 NM_201516 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 119.333-76 chr4 188958151 188958381 + 0.666667 NA Intergenic Intergenic 181609 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 141.333-50 chr2 108378618 108379015 + 0.666667 NA intron (NR_135779, intron 1 of 2) intron (NR_135779, intron 1 of 2) 862 NM_006588 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 119.833-36 chr18 76968153 76968424 + 0.666667 NA exon (NM_007345, exon 31 of 31) exon (NM_007345, exon 31 of 31) 48767 NM_002385 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 175-18 chr12 16211781 16212206 + 0.666667 NA intron (NM_001170798, intron 7 of 8) intron (NM_001170798, intron 7 of 8) 65692 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 141.667-86 chr5 13415009 13415363 + 0.666667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -382300 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 124-99 chr8 123263493 123263703 + 0.666667 NA intron (NM_001017926, intron 2 of 3) AluSx1|SINE|Alu 10688 NM_001204180 100533106 Hs.707401 NM_001204180 ENSG00000259305 ZHX1-C8orf76 - ZHX1-C8orf76 readthrough protein-coding 113.833-63 chr4 47380820 47381346 + 0.666667 NA intron (NM_000812, intron 5 of 8) intron (NM_000812, intron 5 of 8) 82619 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 136.5-100 chrX 93266555 93266804 + 0.666667 NA Intergenic Intergenic 406899 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 176.667-14 chr10 66686193 66686626 + 0.666667 NA intron (NM_001127384, intron 9 of 17) AluJb|SINE|Alu -239627 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 148.667 chr1 94905346 94905680 + 0.666667 NA intron (NM_001839, intron 1 of 6) intron (NM_001839, intron 1 of 6) 20295 NM_001286056 1266 Hs.483454 NM_001839 ENSG00000117519 CNN3 - calponin 3 protein-coding 124.167-36 chr17 80467384 80467774 + 0.666667 NA 3' UTR (NM_002522, exon 5 of 5) 3' UTR (NM_002522, exon 5 of 5) 9028 NM_002522 4884 Hs.514556 NM_002522 ENSG00000171246 NPTX1 NP1 neuronal pentraxin 1 protein-coding 152.667-79 chr7 31993217 31993562 + 0.666667 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 77018 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 133.833-25 chr14 58082442 58082749 + 0.666667 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 69618 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 134.333-45 chr17 19529238 19529535 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR -4468 NM_018242 55244 Hs.232054 NM_018242 ENSG00000142494 SLC47A1 MATE1 solute carrier family 47 member 1 protein-coding 145.833-72 chr7 4428891 4429163 + 0.666667 NA Intergenic Intergenic -253268 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 132.333-95 chr7 26961906 26962246 + 0.666667 NA Intergenic L1MC1|LINE|L1 -97486 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 147.833-12 chr11 87574231 87574494 + 0.666667 NA Intergenic Intergenic 145049 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 114.667-114 chr7 4537762 4537960 + 0.666667 NA Intergenic MIR|SINE|MIR -144434 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 207.333-32 chr21 15953511 15953883 + 0.666667 NA Intergenic L1PA13|LINE|L1 -116791 NR_136541 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 143.333-86 chr8 73127531 73127855 + 0.666667 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -34521 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 180-37 chr4 61654433 61654897 + 0.666667 NA intron (NM_001371343, intron 5 of 23) AluSg7|SINE|Alu 452493 NM_001371342 201.667 chr1 47702525 47703009 + 0.666667 NA Intergenic Intergenic -265450 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 148-47 chr20 42337619 42337991 + 0.666667 NA intron (NM_133170, intron 11 of 31) intron (NM_133170, intron 11 of 31) -347678 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 162.834-7 chr6 159224717 159225261 + 0.666667 NA intron (NM_032532, intron 7 of 22) intron (NM_032532, intron 7 of 22) -54982 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 188.667-15 chr12 64396402 64396821 + 0.666667 NA Intergenic Intergenic -5853 NM_001099676 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 187.667-34 chr3 86580200 86580626 + 0.666667 NA Intergenic Intergenic 98470 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 222.667-37 chr8 136314033 136314553 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -216505 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 237-9 chr19 27958608 27959383 + 0.666667 NA intron (NR_146734, intron 3 of 7) HAL1|LINE|L1 -165055 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 145-32 chr16 79823992 79824348 + 0.666667 NA Intergenic Intergenic 28921 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 120-75 chr3 159077236 159077449 + 0.666667 NA intron (NM_001197113, intron 1 of 10) L1ME4b|LINE|L1 8023 NM_001042706 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 139.667-71 chr4 166988470 166988800 + 0.666667 NA intron (NM_001204355, intron 2 of 8) intron (NM_001204355, intron 2 of 8) 245791 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 123.667-69 chr3 57355653 57355969 + 0.666667 NA intron (NM_001366028, intron 59 of 73) intron (NM_001366028, intron 59 of 73) -63126 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 135.333-40 chr2 71138896 71139164 + 0.666667 NA intron (NM_005791, intron 5 of 10) AluSx1|SINE|Alu 8396 NM_005791 10199 Hs.656208 NM_005791 ENSG00000124383 MPHOSPH10 CT90|MPP10|MPP10P|PPP1R106 M-phase phosphoprotein 10 protein-coding 173.667-75 chr9 134722260 134722807 + 0.666667 NA intron (NM_001278074, intron 4 of 65) intron (NM_001278074, intron 4 of 65) -69690 NR_138049 414316 Hs.571561 NR_138049 ENSG00000204011 COL5A1-AS1 C9orf104|bA54A22.4 COL5A1 antisense RNA 1 ncRNA 224.5-2 chr1 65000350 65000717 + 0.666667 NA intron (NR_119383, intron 1 of 6) intron (NR_119383, intron 1 of 6) 1943 NR_119383 101927084 Hs.734218 NR_119383 ENSG00000226891 LINC01359 - long intergenic non-protein coding RNA 1359 ncRNA 145.833-66 chr5 61633560 61634076 + 0.666667 NA Intergenic Intergenic -3942 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 154-47 chr20 51470413 51470819 + 0.666667 NA intron (NM_012340, intron 5 of 10) intron (NM_012340, intron 5 of 10) -17639 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 159-71 chrX 75027411 75027712 + 0.666667 NA Intergenic L1MA2|LINE|L1 -102109 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 179.667-51 chr7 96719585 96719890 + 0.666667 NA Intergenic Intergenic -9846 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 139.333-18 chr11 4619338 4619678 + 0.666667 NA Intergenic LTR71B|LTR|ERV1 -11277 NM_018073 55128 Hs.523438 NM_018073 ENSG00000167333 TRIM68 GC109|RNF137|SS-56|SS56 tripartite motif containing 68 protein-coding 138-102 chr7 115868140 115868364 + 0.666667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 100061 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 190-20 chr16 55102907 55103347 + 0.666667 NA Intergenic Intergenic 171928 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 316.833-5 chr13 44554486 44555197 + 0.666667 NA intron (NM_183422, intron 1 of 2) intron (NM_183422, intron 1 of 2) -21055 NR_038381 641467 Hs.624196 NR_038381 ENSG00000278156 TSC22D1-AS1 - TSC22D1 antisense RNA 1 ncRNA 163-28 chr2 15354165 15354513 + 0.666667 NA intron (NR_052013, intron 33 of 50) intron (NR_052013, intron 33 of 50) 206995 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 117.667-82 chr3 161836986 161837218 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR 340294 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 145.667-14 chr11 29634964 29635442 + 0.666667 NA Intergenic Intergenic 16401 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 135-72 chr4 55812317 55812663 + 0.666667 NA Intergenic Intergenic -7513 NM_001351575 644145 Hs.570825 NM_001351574 ENSG00000250821 EXOC1L - exocyst complex component 1 like protein-coding 232.333-9 chr13 34203565 34204063 + 0.666667 NA Intergenic L1MEg|LINE|L1 -144229 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 205.5-40 chr7 51883959 51884314 + 0.666667 NA Intergenic AluSx|SINE|Alu -490880 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 176.333-13 chr10 124473189 124473605 + 0.666667 NA intron (NM_001318332, intron 1 of 5) intron (NM_001318332, intron 1 of 5) 11574 NM_001318332 64077 Hs.527748 NM_022126 ENSG00000107902 LHPP HDHD2B phospholysine phosphohistidine inorganic pyrophosphate phosphatase protein-coding 183.167-59 chr8 129470032 129470541 + 0.666667 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 13856 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 227.333-8 chr10 104215950 104216608 + 0.666667 NA intron (NM_025145, intron 3 of 37) L2b|LINE|L2 2604 NR_030340 693194 NR_030340 ENSG00000208033 MIR609 MIRN609|hsa-mir-609 microRNA 609 ncRNA 173.167-32 chr4 112938019 112938343 + 0.666667 NA intron (NM_001354275, intron 2 of 43) MIRc|SINE|MIR 77194 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 185.333-6 chr10 19374529 19374950 + 0.666667 NA intron (NM_001142308, intron 26 of 39) MLT1J|LTR|ERVL-MaLR 325938 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 138.5-21 chr13 82152156 82152479 + 0.666667 NA Intergenic L1MB1|LINE|L1 -925334 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 144.5-26 chr14 57218265 57218818 + 0.666667 NA intron (NM_006544, intron 14 of 17) intron (NM_006544, intron 14 of 17) 50364 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 177.833-25 chr3 61073634 61074202 + 0.666667 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 177534 NM_001320900 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 205-40 chr8 77900172 77900581 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger 449679 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 146.333-67 chr3 142989627 142990087 + 0.666667 NA intron (NR_125393, intron 2 of 4) L1ME4b|LINE|L1 11610 NR_034032 100289361 Hs.599649 NR_034032 ENSG00000268129 LOC100289361 - uncharacterized LOC100289361 ncRNA 227.333-32 chr5 26140879 26141372 + 0.666667 NA Intergenic Intergenic 897461 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 155-31 chr19 29192039 29192381 + 0.666667 NA Intergenic Intergenic 20941 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 139.667-28 chr14 96931835 96932231 + 0.666667 NA Intergenic Intergenic -11546 NR_104113 145249 Hs.592323 NR_104113 ENSG00000225163 LINC00618 C14orf63 long intergenic non-protein coding RNA 618 ncRNA 165.667-41 chr20 8665486 8665864 + 0.666667 NA intron (NM_182734, intron 9 of 32) intron (NM_182734, intron 9 of 32) -165510 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 225-38 chr8 104664493 104665010 + 0.666667 NA Intergenic Intergenic -75727 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 185.333-23 chr16 89329708 89330073 + 0.666667 NA intron (NR_045839, intron 2 of 9) AluSz|SINE|Alu 8757 NM_001242885 100287036 Hs.656995 NM_001242885 LOC100287036 - uncharacterized LOC100287036 protein-coding 228.833-19 chr7 35803442 35804141 + 0.666667 NA intron (NM_001788, intron 1 of 12) intron (NM_001788, intron 1 of 12) 2572 NM_001363715 989 Hs.191346 NM_001788 ENSG00000122545 SEPTIN7 CDC10|CDC3|NBLA02942|SEPT7|SEPT7A septin 7 protein-coding 157-80 chr8 100226224 100226649 + 0.666667 NA intron (NM_003114, intron 14 of 18) AluJb|SINE|Alu 68101 NM_003114 6674 Hs.591866 NM_003114 ENSG00000104450 SPAG1 CILD28|CT140|HEL-S-268|HSD-3.8|SP75|TPIS sperm associated antigen 1 protein-coding 160-62 chr5 77830234 77830656 + 0.666667 NA Intergenic Chap1_Mam|DNA|hAT-Charlie -54084 NM_001297740 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 138-5 chr1 162907712 162908159 + 0.666667 NA Intergenic Intergenic -39120 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 154.5-12 chr11 84762773 84763059 + 0.666667 NA intron (NM_001351274, intron 5 of 26) L2c|LINE|L2 -41974 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 216.667-20 chr16 72705427 72705918 + 0.666667 NA Intergenic Intergenic -40702 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 162.333-19 chr14 59674440 59674842 + 0.666667 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -27621 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 152.667-15 chr11 45892176 45892601 + 0.666667 NA intron (NM_005456, intron 1 of 11) L2c|LINE|L2 6737 NM_005456 9479 Hs.234249 NM_005456 ENSG00000121653 MAPK8IP1 IB1|JIP-1|JIP1|PRKM8IP mitogen-activated protein kinase 8 interacting protein 1 protein-coding 130.833-43 chr3 111874748 111875104 + 0.666667 NA intron (NM_001134439, intron 1 of 17) intron (NM_001134439, intron 1 of 17) 15099 NM_001134439 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 179.167-26 chr2 55487673 55488023 + 0.666667 NA Intergenic Intergenic -31747 NM_080667 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 148.667-72 chr7 33258016 33258301 + 0.666667 NA intron (NM_198428, intron 6 of 22) intron (NM_198428, intron 6 of 22) 128594 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 252.333 chr1 45794021 45794855 + 0.666667 NA Intergenic MER1B|DNA|hAT-Charlie -9169 NM_001324320 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 126.5-87 chr8 126692409 126692716 + 0.666667 NA Intergenic Intergenic -134084 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 138.5-3 chr1 65032500 65032878 + 0.666667 NA intron (NM_001321853, intron 2 of 26) intron (NM_001321853, intron 2 of 26) 25153 NR_037443 100500854 NR_037443 ENSG00000265996 MIR3671 - microRNA 3671 ncRNA 135.333-71 chr6 128620570 128620921 + 0.666667 NA Intergenic L1MEj|LINE|L1 -100146 NM_001291981 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 150.333-54 chr2 31730305 31730607 + 0.666667 NA Intergenic L1MA4|LINE|L1 73524 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 153-53 chr8 32212306 32212624 + 0.666667 NA intron (NM_013962, intron 1 of 4) MER3|DNA|hAT-Charlie 186247 NR_104157 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 174.333-67 chr8 103069837 103070263 + 0.666667 NA 3' UTR (NM_001695, exon 13 of 13) 3' UTR (NM_001695, exon 13 of 13) 48967 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 144.333-11 chr1 205095437 205095807 + 0.666667 NA intron (NM_001193273, intron 12 of 13) MIRb|SINE|MIR -11162 NM_203376 388730 Hs.146928 NM_203376 ENSG00000174529 TMEM81 HC3107|KVLA2788|UNQ2788 transmembrane protein 81 protein-coding 150.5-2 chr1 49316815 49317247 + 0.666667 NA intron (NR_136623, intron 2 of 12) HAL1b|LINE|L1 59620 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 176.833-36 chr8 131676881 131677193 + 0.666667 NA Intergenic AluSx3|SINE|Alu -227056 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 340-6 chr8 74671524 74672220 + 0.666667 NA intron (NR_033830, intron 2 of 5) intron (NR_033830, intron 2 of 5) -33821 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 177.667-20 chr13 32727905 32728476 + 0.666667 NA intron (NM_015032, intron 19 of 34) L1MEf|LINE|L1 141738 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 173.667-31 chr2 214572202 214572522 + 0.666667 NA intron (NR_159945, intron 4 of 4) Plat_L3|LINE|CR1 62180 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 165-46 chr5 44833433 44833755 + 0.666667 NA Intergenic L2a|LINE|L2 24647 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 113.667-108 chr6 20884186 20884453 + 0.666667 NA intron (NM_017774, intron 9 of 15) L1MB4|LINE|L1 349862 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 232.5-11 chr14 66510663 66511093 + 0.666667 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 3471 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 166.334-3 chr5 52870714 52871421 + 0.666667 NA intron (NM_181501, intron 6 of 28) LTR78|LTR|ERV1 83151 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 133-101 chr9 90660096 90660423 + 0.666667 NA Intergenic L1PA13|LINE|L1 -17435 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 146.333-50 chr2 66443372 66443645 + 0.666667 NA intron (NM_002398, intron 6 of 12) intron (NM_002398, intron 6 of 12) -3178 NR_046625 100873998 Hs.734698 NR_046625 ENSG00000230749 MEIS1-AS2 MEIS1-AS1 MEIS1 antisense RNA 2 ncRNA 163.333-16 chr12 13269117 13269597 + 0.666667 NA Intergenic Intergenic 72631 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 130.667-89 chr7 52498917 52499202 + 0.666667 NA Intergenic Intergenic -536574 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 138.333-102 chr8 67106361 67106609 + 0.666667 NA intron (NM_001363133, intron 8 of 27) intron (NM_001363133, intron 8 of 27) 22637 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 130.833-21 chr15 70742425 70742838 + 0.666667 NA intron (NM_018003, intron 1 of 18) intron (NM_018003, intron 1 of 18) 20927 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 143.333-7 chr10 87653093 87653318 + 0.666667 NA Intergenic (TTTATT)n|Simple_repeat|Simple_repeat -6673 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 270.667-4 chr15 83787282 83787933 + 0.666667 NA intron (NM_207517, intron 4 of 29) HAL1|LINE|L1 133484 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 130.333-52 chr2 158234752 158235274 + 0.666667 NA intron (NM_138803, intron 10 of 13) L1PA13|LINE|L1 68363 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 145.333-56 chr4 47334858 47335163 + 0.666667 NA intron (NM_000812, intron 5 of 8) intron (NM_000812, intron 5 of 8) 128692 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 129.833-53 chr5 14775101 14775344 + 0.666667 NA intron (NM_054027, intron 1 of 11) AluJo|SINE|Alu 50790 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 210-21 chr22 27158220 27158733 + 0.666667 NA Intergenic Intergenic -29040 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 117.167-43 chr2 115213027 115213555 + 0.666667 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) 51136 NM_001321909 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 208.833-27 chr5 26122408 26122839 + 0.666667 NA Intergenic MER58A|DNA|hAT-Charlie 915963 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 156-93 chr8 134238984 134239544 + 0.666667 NA Intergenic L1MD2|LINE|L1 352768 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 130.333-84 chr7 25460197 25460549 + 0.666667 NA Intergenic L2c|LINE|L2 202767 NR_157823 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 151.5-59 chr5 39319855 39320235 + 0.666667 NA intron (NM_001737, intron 5 of 10) L1M1|LINE|L1 44450 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 183.333-27 chr2 35373448 35373779 + 0.666667 NA Intergenic MSTA-int|LTR|ERVL-MaLR -97792 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 122.5-66 chr4 35352720 35352933 + 0.666667 NA Intergenic Intergenic 891113 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 193.833-17 chr14 72554842 72555312 + 0.666667 NA intron (NR_135235, intron 18 of 18) intron (NR_135235, intron 18 of 18) 38257 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 137.167-41 chr22 36754961 36755288 + 0.666667 NA intron (NR_134623, intron 2 of 3) AluSx|SINE|Alu 20995 NM_001363003 11020 Hs.415172 NM_006860 ENSG00000100360 IFT27 BBS19|RABL4|RAYL intraflagellar transport 27 protein-coding 148.5-30 chr16 75294318 75294672 + 0.666667 NA intron (NM_006324, intron 6 of 6) intron (NM_006324, intron 6 of 6) -26488 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1 scaffold protein, Cas family member protein-coding 165.833-13 chr11 70254302 70254630 + 0.666667 NA Intergenic AluSx3|SINE|Alu -16224 NR_045286 8500 Hs.530749 NM_003626 ENSG00000131626 PPFIA1 LIP.1|LIP1|LIPRIN PTPRF interacting protein alpha 1 protein-coding 147-78 chr7 2690714 2691032 + 0.666667 NA intron (NM_001321766, intron 1 of 6) AluSz|SINE|Alu 2671 NM_001321766 155185 Hs.42221 NM_133463 ENSG00000174945 AMZ1 - archaelysin family metallopeptidase 1 protein-coding 150.333-47 chr17 66389156 66389530 + 0.666667 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 27511 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 117.167-53 chr20 36873201 36873500 + 0.666667 NA Intergenic Intergenic -2771 NM_001304783 140711 Hs.472630 NM_080628 ENSG00000101342 TLDC2 C20orf118 TBC/LysM-associated domain containing 2 protein-coding 124.667-97 chr5 77093430 77093877 + 0.666667 NA intron (NR_024398, intron 2 of 3) HSMAR2|DNA|TcMar-Mariner -6368 NM_001329564 84327 Hs.584988 NM_032367 ENSG00000132846 ZBED3 - zinc finger BED-type containing 3 protein-coding 135.667-92 chr5 143712779 143713125 + 0.666667 NA Intergenic Intergenic 33092 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 276.334 chr3 105924035 105924568 + 0.666667 NA Intergenic AluSz|SINE|Alu -54900 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 115 chr1 39783473 39783726 + 0.666667 NA intron (NM_001720, intron 1 of 6) intron (NM_001720, intron 1 of 6) 5266 NM_001720 656 Hs.734367 NM_001720 ENSG00000116985 BMP8B BMP8|OP2 bone morphogenetic protein 8b protein-coding 135.667-69 chr3 42840398 42840826 + 0.666667 NA intron (NM_001296, intron 2 of 2) MIR|SINE|MIR 31167 NM_001296 1238 Hs.146346 NM_001296 ENSG00000144648 ACKR2 CCBP2|CCR10|CCR9|CMKBR9|D6|hD6 atypical chemokine receptor 2 protein-coding 152-25 chr16 67065380 67065915 + 0.666667 NA intron (NM_001368708, intron 3 of 4) FLAM_C|SINE|Alu 36498 NM_001368708 865 Hs.460988 NM_001755 ENSG00000067955 CBFB PEBP2B core-binding factor subunit beta protein-coding 178-66 chr8 100726142 100726647 + 0.666667 NA Intergenic Intergenic -4306 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 257.667-8 chr2 71544880 71545509 + 0.666667 NA intron (NM_001130985, intron 17 of 54) L2c|LINE|L2 78495 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 211-7 chr10 70476603 70476974 + 0.666667 NA Intergenic Intergenic -1979 NM_014431 27143 Hs.202351 NM_014431 ENSG00000107719 PALD1 KIAA1274|PALD phosphatase domain containing paladin 1 protein-coding 127.333-59 chr2 209135617 209135941 + 0.666667 NA Intergenic Intergenic -288268 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 190.833-31 chr4 84255889 84256204 + 0.666667 NA intron (NR_125909, intron 4 of 8) Charlie1a|DNA|hAT-Charlie 43123 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 145.667-89 chr6 90742307 90742727 + 0.666667 NA Intergenic L1MB7|LINE|L1 -155445 NM_145331 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 157-71 chr6 73161872 73162277 + 0.666667 NA intron (NM_001160132, intron 10 of 13) AluSq2|SINE|Alu -18560 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 189.167-22 chr18 35617163 35617757 + 0.666667 NA Intergenic L1MC5a|LINE|L1 25723 NR_039771 100616257 NR_039771 ENSG00000283514 MIR3975 - microRNA 3975 ncRNA 123.333-91 chr6 10981545 10981958 + 0.666667 NA 3' UTR (NM_017770, exon 8 of 8) 3' UTR (NM_017770, exon 8 of 8) -27662 NR_125851 101928191 Hs.638939 NR_125851 LOC101928191 - uncharacterized LOC101928191 ncRNA 113.667-114 chr6 142895390 142895650 + 0.666667 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 49656 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 132.667-81 chr6 74118964 74119216 + 0.666667 NA intron (NR_110856, intron 1 of 3) L2|LINE|L2 49639 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 139.333-32 chr13 90372990 90373457 + 0.666667 NA Intergenic Tigger2a|DNA|TcMar-Tigger -120065 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 182.167-27 chr20 33230618 33231116 + 0.666667 NA Intergenic AluSx|SINE|Alu -5129 NM_001243193 51297 Hs.211092 NM_016583 ENSG00000198183 BPIFA1 LUNX|NASG|PLUNC|SPLUNC1|SPURT|bA49G10.5 BPI fold containing family A member 1 protein-coding 291.333-6 chr2 147124442 147125003 + 0.666667 NA Intergenic MSTA-int|LTR|ERVL-MaLR 537665 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 210.333-4 chr1 227158574 227159022 + 0.666667 NA intron (NM_001366019, intron 6 of 36) intron (NM_001366019, intron 6 of 36) 159694 NM_001366010 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 197-2 chr1 107739283 107739680 + 0.666667 NA intron (NM_006113, intron 15 of 26) intron (NM_006113, intron 15 of 26) -50982 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 146.667-8 chr1 200477952 200478212 + 0.666667 NA Intergenic MIRc|SINE|MIR -68046 NM_012482 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 166.334-4 chr5 106393576 106394144 + 0.666667 NA Intergenic L3|LINE|CR1 617154 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 115.167-92 chr6 47777340 47777797 + 0.666667 NA Intergenic Intergenic -4471 NM_181744 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 164-55 chr5 75522836 75523200 + 0.666667 NA intron (NM_001345921, intron 1 of 13) intron (NM_001345921, intron 1 of 13) -11037 NM_001130105 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 122-11 chr10 121803200 121803402 + 0.666667 NA intron (NM_001001976, intron 10 of 11) MIR3|SINE|MIR 124730 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 177-15 chr14 28549286 28549685 + 0.666667 NA Intergenic Intergenic 215834 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 131.667-101 chr5 55172045 55172355 + 0.666667 NA TTS (NR_031572) TTS (NR_031572) 153 NR_031572 100313923 NR_031572 ENSG00000251856 MIR449C mir-449c microRNA 449c ncRNA 132.333-91 chr6 51268532 51268968 + 0.666667 NA Intergenic Intergenic -353120 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 175.333-6 chr11 133182606 133182933 + 0.666667 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -239001 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 118.5-58 chr2 225470996 225471336 + 0.666667 NA intron (NM_001371273, intron 3 of 7) intron (NM_001371273, intron 3 of 7) 70280 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 169.333-10 chr10 115450321 115450706 + 0.666667 NA intron (NM_207303, intron 21 of 28) L1PA14|LINE|L1 357148 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 207.667-28 chr21 31481923 31482458 + 0.666667 NA intron (NM_003253, intron 1 of 28) AluSx1|SINE|Alu 76897 NM_001353690 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 227-6 chr13 23816682 23817272 + 0.666667 NA intron (NM_005932, intron 14 of 18) L1MEf|LINE|L1 -71891 NM_001014442 542767 Hs.642624 NM_001014442 PCOTH C1QTNF9B-AS1 Pro-X-Gly collagen triple helix like repeat containing protein-coding 172.333-67 chr6 132876376 132876733 + 0.666667 NA Intergenic Intergenic 59335 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 158-58 chr9 29115170 29115509 + 0.666667 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 96960 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 183.5-44 chr3 106945459 106945771 + 0.666667 NA Intergenic Intergenic 295023 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 199.667-44 chr3 136661015 136661492 + 0.666667 NA intron (NM_005862, intron 1 of 33) intron (NM_005862, intron 1 of 33) 91125 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 176.667-16 chr11 79610053 79610524 + 0.666667 NA Intergenic L2c|LINE|L2 -169258 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 124.667-2 chr1 93477886 93478182 + 0.666667 NA intron (NM_001024948, intron 1 of 13) intron (NM_001024948, intron 1 of 13) 29903 NM_001164473 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 188.167-44 chr8 104958432 104958780 + 0.666667 NA Intergenic Intergenic -359832 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 164.833-4 chr1 84120800 84121153 + 0.666667 NA intron (NM_002731, intron 1 of 9) Arthur1|DNA|hAT-Tip100 -23295 NM_182948 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 124-53 chr2 124804315 124804543 + 0.666667 NA intron (NM_130773, intron 19 of 23) intron (NM_130773, intron 19 of 23) 779142 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 132.333-26 chr12 24838250 24838615 + 0.666667 NA intron (NM_001178091, intron 6 of 9) intron (NM_001178091, intron 6 of 9) 63790 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 168.333-63 chr9 119658998 119659406 + 0.666667 NA Intergenic L2a|LINE|L2 -275858 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 140.5-30 chr17 68968166 68968679 + 0.666667 NA Intergenic L1MB8|LINE|L1 -13030 NM_001288985 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 208.333-29 chr3 123035914 123036436 + 0.666667 NA Intergenic L1MB3|LINE|L1 -7570 NR_046079 54437 Hs.210870 NM_018987 ENSG00000082684 SEMA5B SEMAG|SemG semaphorin 5B protein-coding 194.333-28 chr4 55655189 55655752 + 0.666667 NA Intergenic Intergenic -18677 NR_120489 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 139.333-69 chr4 111069329 111069620 + 0.666667 NA Intergenic Intergenic -208827 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 200.667-16 chr11 75478658 75479175 + 0.666667 NA intron (NM_030792, intron 2 of 16) MIRb|SINE|MIR -26589 NM_001351167 81544 Hs.503297 NM_030792 ENSG00000158555 GDPD5 GDE2|PP1665 glycerophosphodiester phosphodiesterase domain containing 5 protein-coding 121.667-63 chr3 47209828 47210165 + 0.666667 NA intron (NR_033373, intron 2 of 6) Charlie2a|DNA|hAT-Charlie 40613 NR_145712 109617025 NR_145712 SNORD13J - small nucleolar RNA, C/D box 13J snoRNA 129.167-33 chr17 47438826 47439071 + 0.666667 NA intron (NM_152347, intron 24 of 24) intron (NM_152347, intron 24 of 24) 53672 NR_033934 653479 Hs.537279 NR_033934 MRPL45P2 - mitochondrial ribosomal protein L45 pseudogene 2 pseudo 160-36 chr16 78298881 78299227 + 0.666667 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 199400 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 181.667-17 chr16 73409278 73409746 + 0.666667 NA intron (NR_038234, intron 1 of 2) L1MA3|LINE|L1 22707 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 163.5-39 chr20 46699278 46699842 + 0.666667 NA Intergenic Intergenic -10089 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 180-5 chr10 75666859 75667290 + 0.666667 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) 19565 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 149-4 chr1 39092599 39092882 + 0.666667 NA intron (NM_012090, intron 1 of 92) L1MC5|LINE|L1 8573 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 186.667-2 chr1 102205005 102205321 + 0.666667 NA Intergenic Intergenic -207929 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 190-34 chr2 239849096 239849512 + 0.666667 NA Intergenic L1PB1|LINE|L1 86444 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 233.333-20 chr17 32213352 32213876 + 0.666667 NA intron (NM_001033566, intron 19 of 19) L3|LINE|CR1 -52218 NM_138328 162494 Hs.655027 NM_138328 ENSG00000141314 RHBDL3 RHBDL4|VRHO rhomboid like 3 protein-coding 117.167-40 chr2 62799961 62800276 + 0.666667 NA intron (NM_001142615, intron 5 of 22) intron (NM_001142615, intron 5 of 22) 93221 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 194.333-31 chr5 25361839 25362382 + 0.666667 NA Intergenic L1MA2|LINE|L1 171157 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 183-9 chr12 130941260 130941670 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR -12442 NM_198827 283383 Hs.719239 NM_198827 ENSG00000111452 ADGRD1 GPR133|PGR25 adhesion G protein-coupled receptor D1 protein-coding 263.333-9 chr14 72030176 72030687 + 0.666667 NA intron (NM_001370288, intron 2 of 16) L1MEd|LINE|L1 96904 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 167.5-41 chr22 26812835 26813205 + 0.666667 NA Intergenic MER58B|DNA|hAT-Charlie -47191 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 149.333-103 chr9 70251184 70251532 + 0.666667 NA intron (NR_039990, intron 2 of 3) L1ME3Cz|LINE|L1 7516 NR_039990 100507299 Hs.556816 NR_039990 SMC5-AS1 MAMDC2-AS2 SMC5 antisense RNA 1 (head to head) ncRNA 191.667-30 chr22 34357348 34357844 + 0.666667 NA Intergenic L1M5|LINE|L1 -434708 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 130-95 chr7 49125997 49126307 + 0.666667 NA Intergenic Intergenic 201605 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 187.5-51 chr8 115295207 115295690 + 0.666667 NA Intergenic MIRc|SINE|MIR 372565 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 134.667-29 chr14 63264302 63264646 + 0.666667 NA intron (NM_020663, intron 1 of 4) L1PA16|LINE|L1 54461 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 115.833-10 chr11 96384144 96384345 + 0.666667 NA exon (NM_001318736, exon 5 of 11) exon (NM_001318736, exon 5 of 11) 5572 NM_001363594 79780 Hs.525088 NM_014148 ENSG00000149231 CCDC82 HSPC048 coiled-coil domain containing 82 protein-coding 189.667-22 chr15 56742766 56743156 + 0.666667 NA Intergenic Intergenic -8875 NM_001002843 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 166-38 chr22 35216780 35217088 + 0.666667 NA intron (NR_126356, intron 1 of 5) AluSp|SINE|Alu 14122 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 157.833-43 chr21 29316332 29316701 + 0.666667 NA intron (NR_027655, intron 1 of 7) intron (NR_027655, intron 1 of 7) 11312 NR_027655 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 147-28 chr2 6724623 6724884 + 0.666667 NA Intergenic Intergenic 45558 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 170.5-47 chr3 180603740 180604233 + 0.666667 NA intron (NM_001288582, intron 3 of 12) intron (NM_001288582, intron 3 of 12) 1823 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 169.167-35 chr5 141474115 141474462 + 0.666667 NA intron (NM_003735, intron 1 of 3) intron (NM_003735, intron 1 of 3) -1678 NM_002588 5098 Hs.368160 NM_002588 ENSG00000240184 PCDHGC3 PC43|PCDH-GAMMA-C3|PCDH2 protocadherin gamma subfamily C, 3 protein-coding 161-52 chr5 62040025 62040313 + 0.666667 NA Intergenic Intergenic -265993 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 182.667-28 chr18 39198654 39199168 + 0.666667 NA Intergenic L2c|LINE|L2 423264 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 119.333-5 chr1 95180532 95180868 + 0.666667 NA intron (NR_125948, intron 3 of 4) intron (NR_125948, intron 3 of 4) 53282 NR_125948 101928118 Hs.656443 NR_125948 ENSG00000226026 LOC101928118 - uncharacterized LOC101928118 ncRNA 147.5-65 chr4 71065134 71065455 + 0.666667 NA Intergenic Intergenic 71645 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 149-46 chr2 215689438 215689697 + 0.666667 NA intron (NR_037195, intron 5 of 9) intron (NR_037195, intron 5 of 9) -28476 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 199.167-22 chr20 49062212 49062740 + 0.666667 NA intron (NM_001362762, intron 2 of 24) intron (NM_001362762, intron 2 of 24) 16164 NM_001362762 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 115.5-89 chr6 44712062 44712238 + 0.666667 NA Intergenic Intergenic -160269 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 119.333-52 chr2 77625744 77626044 + 0.666667 NA Intergenic Intergenic -103461 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 116.5-62 chr4 89853097 89853356 + 0.666667 NA Intergenic AluSp|SINE|Alu -14922 NM_001146055 6622 Hs.21374 NM_000345 ENSG00000145335 SNCA NACP|PARK1|PARK4|PD1 synuclein alpha protein-coding 310.833-9 chr8 136735589 136736260 + 0.666667 NA intron (NR_147196, intron 2 of 5) LTR78|LTR|ERV1 205126 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 317.167-5 chr13 29798279 29798908 + 0.666667 NA intron (NM_007106, intron 1 of 4) intron (NM_007106, intron 1 of 4) 52024 NM_007106 5412 Hs.145575 NM_007106 ENSG00000122042 UBL3 HCG-1|PNSC1 ubiquitin like 3 protein-coding 163.333-4 chr1 76930068 76930372 + 0.666667 NA intron (NM_001320274, intron 2 of 2) MIR|SINE|MIR 62740 NM_001320273 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 132.167-35 chr2 84710603 84711033 + 0.666667 NA intron (NM_001370, intron 56 of 76) intron (NM_001370, intron 56 of 76) 170266 NM_001307978 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 137.167-48 chr4 107439587 107440073 + 0.666667 NA Intergenic L1PA17|LINE|L1 280404 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 173.333-7 chr1 108612176 108612579 + 0.666667 NA intron (NM_001010883, intron 4 of 10) intron (NM_001010883, intron 4 of 10) 48716 NM_001102592 113802 Hs.7962 NM_144584 ENSG00000162639 HENMT1 C1orf59|HEN1 HEN methyltransferase 1 protein-coding 167.167-21 chr12 46659332 46659898 + 0.666667 NA Intergenic Intergenic 166382 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 211.333-15 chr14 89821177 89821635 + 0.666667 NA intron (NM_001284269, intron 5 of 5) MLT2C1|LTR|ERVL 133130 NM_001284269 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 170.667-5 chr10 66590117 66590450 + 0.666667 NA intron (NM_001127384, intron 10 of 17) MIR3|SINE|MIR -335753 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 186.333-5 chr1 186187247 186187618 + 0.666667 NA intron (NM_031935, intron 105 of 106) intron (NM_031935, intron 105 of 106) -108841 NM_001127708 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 196.167-14 chr14 67964587 67964930 + 0.666667 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 141166 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 219.333-14 chr14 70615078 70615572 + 0.666667 NA intron (NR_110071, intron 2 of 2) L1P4|LINE|L1 -14635 NM_001284211 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 141.667-96 chr6 137148312 137148634 + 0.666667 NA intron (NM_181309, intron 4 of 5) L1MEd|LINE|L1 25171 NM_181309 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 132-18 chr11 112978834 112979164 + 0.666667 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -15539 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 215.667-14 chr15 79241541 79241951 + 0.666667 NA intron (NR_038997, intron 1 of 1) AluSz6|SINE|Alu 31958 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 215.834-8 chr8 95313958 95314597 + 0.666667 NA intron (NR_038208, intron 2 of 3) MLT1K|LTR|ERVL-MaLR -45076 NM_001363260 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 142-45 chr2 85139568 85139941 + 0.666667 NA intron (NM_031283, intron 3 of 11) intron (NM_031283, intron 3 of 11) 6362 NM_031283 83439 Hs.516297 NM_031283 ENSG00000152284 TCF7L1 TCF-3|TCF3 transcription factor 7 like 1 protein-coding 115-78 chr7 79371257 79371438 + 0.666667 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -81610 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 162.667-40 chr2 68681330 68681705 + 0.666667 NA Intergenic Intergenic 37929 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 159.333-60 chr4 128069401 128069703 + 0.666667 NA intron (NR_146772, intron 1 of 19) intron (NR_146772, intron 1 of 19) 8240 NM_001278604 55132 Hs.654971 NM_018078 ENSG00000138709 LARP1B LARP2 La ribonucleoprotein domain family member 1B protein-coding 141.667-71 chr3 175566369 175566752 + 0.666667 NA intron (NM_207015, intron 9 of 13) intron (NM_207015, intron 9 of 13) 197020 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 186.667-62 chr4 146488895 146489438 + 0.666667 NA intron (NM_032128, intron 4 of 4) intron (NM_032128, intron 4 of 4) 32774 NR_133924 84068 Hs.659209 NM_032128 ENSG00000120519 SLC10A7 C4orf13|P7|SSASKS solute carrier family 10 member 7 protein-coding 219.333-9 chr12 45883454 45884046 + 0.666667 NA intron (NM_152641, intron 16 of 20) MIRb|SINE|MIR 106824 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 227.167-29 chr8 26295778 26296198 + 0.666667 NA intron (NM_001177591, intron 2 of 9) intron (NM_001177591, intron 2 of 9) 2772 NM_001177591 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 198.5-39 chr6 119244058 119244436 + 0.666667 NA intron (NM_005907, intron 6 of 12) intron (NM_005907, intron 6 of 12) -95054 NM_001100411 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 222.667-12 chr14 82521763 82522164 + 0.666667 NA Intergenic Intergenic -120669 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 238.333-22 chr4 37897006 37897644 + 0.666667 NA intron (NM_001253912, intron 1 of 20) intron (NM_001253912, intron 1 of 20) 6241 NM_015173 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 168.167-56 chr8 47248208 47248482 + 0.666667 NA Intergenic L1MA9|LINE|L1 -12533 NM_001352940 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 175.167-47 chr8 92486825 92487146 + 0.666667 NA Intergenic Intergenic 168509 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 117.667-6 chr1 199160825 199161201 + 0.666667 NA intron (NR_147896, intron 1 of 3) (AAGG)n|Simple_repeat|Simple_repeat 12415 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 175.333-65 chr8 84153963 84154265 + 0.666667 NA Intergenic FordPrefect|DNA|hAT-Tip100 -28673 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 171.333-70 chr9 27888011 27888322 + 0.666667 NA Intergenic MIR|SINE|MIR -314300 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 376.167-2 chr4 44519879 44520921 + 0.666667 NA Intergenic THE1C|LTR|ERVL-MaLR -71591 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 121.5-80 chr5 3527607 3527835 + 0.666667 NA intron (NR_033898, intron 2 of 4) intron (NR_033898, intron 2 of 4) 8373 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 115.667-125 chrX 37642605 37642898 + 0.666667 NA intron (NM_198511, intron 1 of 5) MLT1L|LTR|ERVL-MaLR -43040 NM_021083 7504 Hs.78919 NM_021083 ENSG00000047597 XK KX|NA|NAC|X1k|XKR1 X-linked Kx blood group protein-coding 113.333-108 chr8 106030991 106031186 + 0.666667 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 29415 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 222.833 chr1 225595423 225595966 + 0.666667 NA intron (NM_001008493, intron 1 of 14) intron (NM_001008493, intron 1 of 14) 57429 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 146.167-35 chr2 158402772 158403105 + 0.666667 NA intron (NM_138803, intron 1 of 13) MIR1_Amn|SINE|MIR 53815 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 168.833-49 chr7 25284138 25284685 + 0.666667 NA Intergenic Intergenic -55925 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 218.667-34 chr6 106478876 106479392 + 0.666667 NA intron (NM_001371242, intron 2 of 21) L1MB7|LINE|L1 -21886 NR_134603 105377924 Hs.741855 NR_134603 ENSG00000282408 LOC105377924 - uncharacterized LOC105377924 ncRNA 175.5-13 chr11 38348825 38349281 + 0.666667 NA Intergenic MSTA|LTR|ERVL-MaLR 297303 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 186.333-46 chr4 60528780 60529283 + 0.666667 NA Intergenic L1MEd|LINE|L1 -393588 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 124.5-64 chr6 41859073 41859365 + 0.666667 NA intron (NM_001286554, intron 1 of 5) L2c|LINE|L2 12418 NM_001286554 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 147.833-60 chr6 142418918 142419414 + 0.666667 NA intron (NM_198569, intron 21 of 24) intron (NM_198569, intron 21 of 24) 117159 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 128.667-94 chr5 45914786 45915052 + 0.666667 NA Intergenic HERVK11-int|LTR|ERVK -218539 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 135.667-105 chr8 74666078 74666457 + 0.666667 NA intron (NR_033830, intron 2 of 5) L2a|LINE|L2 -39426 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 115.667-29 chr13 67660908 67661152 + 0.666667 NA Intergenic UCON20|Unknown|Unknown 288643 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 217.5-34 chr3 111325773 111326434 + 0.666667 NA Intergenic L1MB7|LINE|L1 -216094 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 168.5-6 chr1 161964709 161965089 + 0.666667 NA TTS (NM_007348) TTS (NM_007348) 59566 NM_001297713 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 114.5-56 chr20 617368 617647 + 0.666667 NA Intergenic Intergenic -7241 NM_004609 6939 Hs.437 NM_004609 ENSG00000125878 TCF15 EC2|PARAXIS|bHLHa40 transcription factor 15 protein-coding 138.333-56 chr2 4640652 4641014 + 0.666667 NA intron (NR_034134, intron 3 of 4) intron (NR_034134, intron 3 of 4) 15389 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 133.833-36 chr19 29503496 29503832 + 0.666667 NA intron (NR_040029, intron 1 of 9) L3|LINE|CR1 22088 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 174.167-39 chr8 51847072 51847587 + 0.666667 NA intron (NM_001286783, intron 1 of 5) intron (NM_001286783, intron 1 of 5) -37884 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 151.5-41 chr2 200027260 200027500 + 0.666667 NA Intergenic L1MD2|LINE|L1 -71889 NR_109905 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 119.833-28 chr14 47498513 47498879 + 0.666667 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -155450 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 134.667-52 chr20 18686065 18686430 + 0.666667 NA intron (NR_109955, intron 2 of 3) L1ME4c|LINE|L1 12461 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 146.833-68 chr9 131977808 131978173 + 0.666667 NA intron (NM_001253881, intron 3 of 6) L1MC5|LINE|L1 101877 NM_004269 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 137.5-24 chr12 61069592 61069832 + 0.666667 NA Intergenic Intergenic 1123127 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 162.333-45 chr22 21761875 21762421 + 0.666667 NA 3' UTR (NM_002745, exon 9 of 9) 3' UTR (NM_002745, exon 9 of 9) -26354 NM_013313 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 153.667-28 chr16 7633417 7633677 + 0.666667 NA intron (NM_145893, intron 8 of 13) intron (NM_145893, intron 8 of 13) 300702 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 194.833-30 chr9 6755729 6756174 + 0.666667 NA intron (NM_001146696, intron 1 of 17) MIRc|SINE|MIR -1399 NM_001353999 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 207.5-31 chr6 55436848 55437335 + 0.666667 NA intron (NR_109869, intron 4 of 4) intron (NR_109869, intron 4 of 4) 109622 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 114.667-126 chr8 113810648 113810872 + 0.666667 NA Intergenic FLAM_A|SINE|Alu -373821 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 147-63 chr5 16730361 16730645 + 0.666667 NA intron (NM_012334, intron 19 of 40) intron (NM_012334, intron 19 of 40) -113445 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 209-24 chr2 129000574 129000927 + 0.666667 NA Intergenic HAL1|LINE|L1 136150 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 123.333-9 chr1 190735512 190735770 + 0.666667 NA intron (NR_033922, intron 1 of 4) intron (NR_033922, intron 1 of 4) 110751 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 120.667-102 chr7 14727482 14727876 + 0.666667 NA intron (NM_001350717, intron 5 of 24) intron (NM_001350717, intron 5 of 24) 113771 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 113.667-112 chr6 130863929 130864177 + 0.666667 NA intron (NM_001135554, intron 12 of 14) intron (NM_001135554, intron 12 of 14) 36648 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 209-33 chr3 51388207 51388728 + 0.666667 NA intron (NM_006010, intron 3 of 3) intron (NM_006010, intron 3 of 3) -2818 NM_013286 29890 Hs.118738 NM_013286 ENSG00000259956 RBM15B HUMAGCGB|HsOTT3|OTT3 RNA binding motif protein 15B protein-coding 168.5-4 chr1 81609241 81609533 + 0.666667 NA intron (NM_001366008, intron 3 of 26) LTR82A|LTR|ERVL -51685 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 119.667-5 chr1 171862831 171863128 + 0.666667 NA intron (NM_001278252, intron 1 of 14) L2a|LINE|L2 -1213 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 177.833-17 chr2 35083934 35084321 + 0.666667 NA Intergenic L1MD2|LINE|L1 -387278 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 136.333-88 chr7 3527291 3527601 + 0.666667 NA intron (NM_152744, intron 1 of 44) L2a|LINE|L2 226194 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 262-27 chr8 100595179 100595583 + 0.666667 NA intron (NM_152628, intron 10 of 13) AluJb|SINE|Alu 23024 NM_001363720 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 126.167-82 chr7 9796163 9796515 + 0.666667 NA Intergenic Intergenic 162069 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 157-24 chr14 50206316 50206648 + 0.666667 NA intron (NM_006939, intron 1 of 22) MER2|DNA|TcMar-Tigger 25096 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 147.5-46 chr2 123196163 123196588 + 0.666667 NA Intergenic Intergenic -122894 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 147.167-49 chr5 107598308 107598831 + 0.666667 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 72368 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 133.5-36 chr2 184429299 184429751 + 0.666667 NA Intergenic Intergenic 50550 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 135.667-29 chr13 41041975 41042305 + 0.666667 NA intron (NM_001370329, intron 1 of 9) AluSz|SINE|Alu 19246 NM_001370329 1997 Hs.135646 NM_172373 ENSG00000120690 ELF1 EFTUD1|RIA1 E74 like ETS transcription factor 1 protein-coding 152.167-80 chr9 4812570 4812963 + 0.666667 NA intron (NM_001286699, intron 1 of 6) L1MA5|LINE|L1 19822 NM_005772 10171 Hs.194121 NM_005772 ENSG00000120158 RCL1 RNAC|RPCL1 RNA terminal phosphate cyclase like 1 protein-coding 118.167-62 chr8 40957619 40957855 + 0.666667 NA Intergenic L1MA8|LINE|L1 -59911 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 222-21 chr20 587479 588224 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger 22415 NM_004609 6939 Hs.437 NM_004609 ENSG00000125878 TCF15 EC2|PARAXIS|bHLHa40 transcription factor 15 protein-coding 125.333-56 chr17 60719710 60720006 + 0.666667 NA intron (NM_001330413, intron 5 of 25) intron (NM_001330413, intron 5 of 25) 42007 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 163.667-10 chr10 77367230 77367692 + 0.666667 NA intron (NR_126365, intron 3 of 5) MER5A1|DNA|hAT-Charlie 16589 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 127.667-36 chr2 11775334 11775702 + 0.666667 NA intron (NM_001349201, intron 5 of 20) intron (NM_001349201, intron 5 of 20) 8074 NR_036071 100422862 NR_036071 ENSG00000265056 MIR548S - microRNA 548s ncRNA 114-93 chr7 54279186 54279514 + 0.666667 NA Intergenic MER74A|LTR|ERVL -51347 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 241.167-3 chr18 5203328 5203948 + 0.666667 NA Intergenic L1ME2|LINE|L1 -5886 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 197.833-35 chr8 24662092 24662443 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -113649 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 194-57 chr8 82017069 82017406 + 0.666667 NA Intergenic Intergenic -174951 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 172.333-43 chr2 237723403 237723696 + 0.666667 NA exon (NM_001137550, exon 7 of 24) exon (NM_001137550, exon 7 of 24) 31344 NM_004735 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 200.333-29 chr3 131687433 131687830 + 0.666667 NA intron (NM_130808, intron 5 of 15) intron (NM_130808, intron 5 of 15) -184660 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 143-81 chr8 123086938 123087317 + 0.666667 NA intron (NM_001363149, intron 4 of 21) intron (NM_001363149, intron 4 of 21) 13878 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 191.5-23 chr2 51065921 51066376 + 0.666667 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 33547 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 263.167-14 chr5 51602066 51602772 + 0.666667 NA Intergenic Intergenic 218971 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 122.667-83 chr5 7006254 7006494 + 0.666667 NA Intergenic Intergenic -178453 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 137.333-74 chr5 37074331 37074794 + 0.666667 NA Intergenic HAL1|LINE|L1 -174484 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 176.667-29 chr18 71516843 71517196 + 0.666667 NA Intergenic Intergenic 61937 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 268-18 chr4 73064520 73064957 + 0.666667 NA intron (NM_001297733, intron 4 of 5) intron (NM_001297733, intron 4 of 5) 4978 NM_001297732 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 149.5-10 chr10 71036878 71037257 + 0.666667 NA Intergenic MIRc|SINE|MIR 98014 NR_134314 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 120.333-119 chr8 117890889 117891083 + 0.666667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 29927 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 151.334-3 chr7 45251303 45251820 + 0.666667 NA Intergenic Intergenic 93770 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 239.333-12 chr2 137450919 137451508 + 0.666667 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 476719 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 153-51 chr7 69946801 69947204 + 0.666667 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 348527 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 143.667-9 chr1 159344798 159345077 + 0.666667 NA Intergenic L1ME3D|LINE|L1 -30278 NM_001004467 441911 Hs.553833 NM_001004467 ENSG00000196266 OR10J3 OR1-25|OR10J3P olfactory receptor family 10 subfamily J member 3 protein-coding 210.333 chr1 152715835 152716410 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -3400 NM_001024679 100129271 Hs.601077 NM_001024679 ENSG00000198854 C1orf68 LEP7|XP32 chromosome 1 open reading frame 68 protein-coding 147-7 chr1 234621484 234621861 + 0.666667 NA Intergenic Intergenic -7639 NR_033927 100302691 Hs.209162 NR_033927 ENSG00000224939 LINC00184 HANC|NCRNA00184 long intergenic non-protein coding RNA 184 ncRNA 115.667-32 chr14 61713433 61713660 + 0.666667 NA intron (NM_001243084, intron 1 of 14) intron (NM_001243084, intron 1 of 14) 15924 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 143.333-48 chr20 53030787 53031091 + 0.666667 NA intron (NM_173485, intron 1 of 2) L1ME4a|LINE|L1 58581 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 153.667-60 chr5 87197701 87198152 + 0.666667 NA intron (NR_105018, intron 2 of 3) MamGypsy2-I|LTR|Gypsy 41275 NR_130914 55338 Hs.677194 NM_018382 LINC01949 - long intergenic non-protein coding RNA 1949 ncRNA 148.667-11 chr11 55199488 55199858 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr -62482 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 258.333-16 chr16 8153193 8153661 + 0.666667 NA Intergenic L1MB8|LINE|L1 436411 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 275.667-20 chr4 187251343 187251820 + 0.666667 NA Intergenic Intergenic 49595 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 179.667-8 chr11 65453006 65453621 + 0.666667 NA Intergenic MIR|SINE|MIR -1973 NR_160547 101927789 NR_160547 LOC101927789 - FAU, ubiquitin like and ribosomal protein S30 fusion pseudogene pseudo 117.167-77 chr5 39057862 39058169 + 0.666667 NA intron (NM_001285439, intron 2 of 38) intron (NM_001285439, intron 2 of 38) 16384 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 134.167-2 chr1 115479962 115480242 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR -141866 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 132.667-51 chr2 123077500 123077760 + 0.666667 NA Intergenic Intergenic -4149 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 208.833-25 chr4 94747706 94748471 + 0.666667 NA intron (NR_121610, intron 2 of 2) intron (NR_121610, intron 2 of 2) 9445 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 155-73 chr7 79890744 79891032 + 0.666667 NA Intergenic L1ME1|LINE|L1 -243943 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 214.333-3 chr1 98115102 98115644 + 0.666667 NA Intergenic Intergenic -65680 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 199.167-3 chr10 53029775 53030280 + 0.666667 NA Intergenic LTR30|LTR|ERV1 -258327 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 131-51 chr5 34024878 34025262 + 0.666667 NA intron (NR_037951, intron 4 of 8) intron (NR_037951, intron 4 of 8) -17020 NM_014324 23600 Hs.508343 NM_014324 ENSG00000242110 AMACR AMACRD|CBAS4|P504S|RACE|RM alpha-methylacyl-CoA racemase protein-coding 177.667-42 chr2 167050270 167050790 + 0.666667 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 90425 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 149.667-16 chr12 55875160 55875427 + 0.666667 NA Intergenic LTR49|LTR|ERV1 -32357 NM_002429 4327 Hs.591033 NM_002429 ENSG00000123342 MMP19 CODA|MMP18|RASI-1 matrix metallopeptidase 19 protein-coding 139.333-71 chr5 11387334 11387672 + 0.666667 NA intron (NM_001288715, intron 5 of 20) intron (NM_001288715, intron 5 of 20) 201414 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 134-88 chr5 112182783 112183135 + 0.666667 NA intron (NM_001347887, intron 18 of 23) intron (NM_001347887, intron 18 of 23) 21474 NR_002922 654322 Hs.689709 NR_002922 ENSG00000238363 SNORA13 ACA13 small nucleolar RNA, H/ACA box 13 snoRNA 159.667-36 chr14 74307313 74307625 + 0.666667 NA Intergenic Intergenic -4535 NM_001353606 5826 Hs.94395 NM_005050 ENSG00000119688 ABCD4 ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L ATP binding cassette subfamily D member 4 protein-coding 166-63 chr7 26947984 26948337 + 0.666667 NA Intergenic Intergenic -83570 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 113.167-61 chr6 23373333 23373675 + 0.666667 NA Intergenic Intergenic -655580 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 127.667-24 chr13 113217098 113217391 + 0.666667 NA intron (NM_001008895, intron 2 of 19) intron (NM_001008895, intron 2 of 19) 7631 NM_001354942 8451 Hs.339735 NM_003589 ENSG00000139842 CUL4A - cullin 4A protein-coding 168.333-29 chr2 100697484 100697919 + 0.666667 NA Intergenic L1M4b|LINE|L1 93962 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 158.833-45 chr4 90607472 90607894 + 0.666667 NA intron (NM_207491, intron 5 of 7) MLT1C|LTR|ERVL-MaLR 372652 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 251.833-6 chr2 128844135 128844753 + 0.666667 NA Intergenic L1MB3|LINE|L1 -20156 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 191.833-4 chr11 127963136 127963509 + 0.666667 NA Intergenic Intergenic -245444 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 114.5-83 chr7 16494747 16495151 + 0.666667 NA Intergenic Intergenic -29211 NM_015464 25928 Hs.648106 NM_015464 ENSG00000171243 SOSTDC1 CDA019|DAND7|ECTODIN|USAG1 sclerostin domain containing 1 protein-coding 150.667-21 chr12 8488047 8488320 + 0.666667 NA Intergenic L1MB1|LINE|L1 -25320 NM_080387 338339 Hs.351811 NM_080387 ENSG00000166527 CLEC4D CD368|CLEC-6|CLEC6|CLECSF8|Dectin-3|MCL|MPCL C-type lectin domain family 4 member D protein-coding 164.833-30 chr22 26197748 26198025 + 0.666667 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 28412 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 185.667-31 chr3 20679840 20680295 + 0.666667 NA Intergenic Intergenic 337599 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 197-36 chr4 91809890 91810267 + 0.666667 NA Intergenic THE1C|LTR|ERVL-MaLR 467224 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 136.5-83 chr6 131395154 131395651 + 0.666667 NA Intergenic L1M4|LINE|L1 144998 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 149.833-35 chr5 11177740 11177989 + 0.666667 NA intron (NM_001288715, intron 10 of 20) L4_C_Mam|LINE|RTE-X 411053 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 160.333 chr1 90069747 90070093 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR 74810 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 190.666 chr1 78190267 78190815 + 0.666667 NA Intergenic L1PA11|LINE|L1 -39058 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 137.833-16 chr15 71215950 71216243 + 0.666667 NA intron (NM_024817, intron 3 of 16) intron (NM_024817, intron 3 of 16) -27037 NR_120348 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 156.833-26 chr2 86374666 86374951 + 0.666667 NA Intergenic Intergenic -36725 NM_001164730 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 117.333-26 chr14 33533194 33533474 + 0.666667 NA intron (NM_001165893, intron 3 of 10) L1ME4a|LINE|L1 -175603 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 141.667-106 chr7 101581196 101581626 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -12405 NR_103749 100506527 Hs.535863 NR_103747 ENSG00000233123 LINC01007 - long intergenic non-protein coding RNA 1007 ncRNA 224.5-5 chr11 104376275 104377056 + 0.666667 NA Intergenic Intergenic -212518 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 131.167-78 chr8 25575341 25575736 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR 116305 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 128.333-120 chr8 139328180 139328560 + 0.666667 NA Intergenic L1ME3|LINE|L1 374753 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 183.167-56 chr7 99911064 99911507 + 0.666667 NA intron (NM_033091, intron 1 of 5) L2|LINE|L2 8245 NM_033091 89122 Hs.50749 NM_033017 ENSG00000146833 TRIM4 RNF87 tripartite motif containing 4 protein-coding 123.667-17 chr11 33138915 33139284 + 0.666667 NA intron (NM_001326, intron 3 of 20) intron (NM_001326, intron 3 of 20) 22381 NM_001326 1479 Hs.44402 NM_001326 ENSG00000176102 CSTF3 CSTF-77 cleavage stimulation factor subunit 3 protein-coding 168.667-3 chr1 182139240 182139770 + 0.666667 NA Intergenic Intergenic -77793 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 135.333-26 chr16 53645305 53645679 + 0.666667 NA intron (NM_001127897, intron 17 of 24) L1M4a2|LINE|L1 58367 NM_001328423 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 116.167-76 chr7 125576058 125576303 + 0.666667 NA Intergenic Intergenic -311889 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 153-29 chr2 75676463 75676743 + 0.666667 NA intron (NM_001201334, intron 12 of 16) L3|LINE|CR1 29820 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 129.833-68 chr7 133053723 133054174 + 0.666667 NA intron (NR_133671, intron 2 of 10) intron (NR_133671, intron 2 of 10) -19033 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 272-8 chr22 39542643 39543111 + 0.666667 NA Intergenic Intergenic -10129 NM_194326 91582 Hs.526933 NM_194326 ENSG00000187051 RPS19BP1 AROS|S19BP ribosomal protein S19 binding protein 1 protein-coding 155.167-31 chr3 125499217 125499693 + 0.666667 NA intron (NR_073435, intron 1 of 12) intron (NR_073435, intron 1 of 12) 20747 NM_003794 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 237.667-4 chr18 3491636 3492172 + 0.666667 NA Intergenic Intergenic 25654 NR_110429 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 148.333-47 chr2 124701703 124702046 + 0.666667 NA intron (NM_130773, intron 13 of 23) L1MA9|LINE|L1 676587 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 196.833-17 chr4 38695772 38696102 + 0.666667 NA intron (NM_016531, intron 5 of 5) Tigger20a|DNA|TcMar-Tigger -31309 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 137-64 chr2 211948943 211949364 + 0.666667 NA intron (NM_001042599, intron 2 of 26) L2a|LINE|L2 477207 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 116.667-27 chr13 47474291 47474570 + 0.666667 NA Intergenic L1MC1|LINE|L1 458192 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 190.333-13 chr12 47471130 47471485 + 0.666667 NA Intergenic AluY|SINE|Alu 56299 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 295.167-8 chr3 99107015 99107677 + 0.666667 NA Intergenic Intergenic -205651 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 121.667-8 chr10 49063574 49063868 + 0.666667 NA intron (NM_001031746, intron 5 of 7) L1ME1|LINE|L1 51801 NM_001031746 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 158.333-65 chr7 83758317 83758758 + 0.666667 NA Intergenic Intergenic -109398 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 142.333-76 chr4 33261924 33262345 + 0.666667 NA Intergenic Intergenic 777759 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 145.833-16 chr11 64319404 64319889 + 0.666667 NA intron (NM_181652, intron 1 of 3) intron (NM_181652, intron 1 of 3) 1404 NM_001358516 25824 Hs.502823 NM_012094 ENSG00000126432 PRDX5 ACR1|AOEB166|B166|HEL-S-55|PLP|PMP20|PRDX6|PRXV|SBBI10|prx-V peroxiredoxin 5 protein-coding 152.333-71 chr9 69755252 69755610 + 0.666667 NA intron (NM_001099666, intron 1 of 7) intron (NM_001099666, intron 1 of 7) 4580 NM_001099666 375743 Hs.744192 NM_001099666 ENSG00000188647 PTAR1 - protein prenyltransferase alpha subunit repeat containing 1 protein-coding 118.5-27 chr13 76674424 76674725 + 0.666667 NA Intergenic Intergenic 211831 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 132-80 chr5 180461753 180461987 + 0.666667 NA Intergenic Intergenic -32509 NM_001370473 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 117.667-134 chrX 72621993 72622249 + 0.666667 NA intron (NM_002637, intron 18 of 31) intron (NM_002637, intron 18 of 31) -49018 NM_001166420 55869 Hs.310536 NM_018486 ENSG00000147099 HDAC8 CDA07|CDLS5|HD8|HDACL1|KDAC8|MRXS6|RPD3|WTS histone deacetylase 8 protein-coding 146.667 chr1 56085488 56085827 + 0.666667 NA Intergenic L1ME3F|LINE|L1 140570 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 160-58 chr4 100432290 100432588 + 0.666667 NA intron (NM_001159694, intron 4 of 10) intron (NM_001159694, intron 4 of 10) -37192 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 151.5-53 chr4 36111606 36112311 + 0.666667 NA intron (NR_146894, intron 26 of 32) intron (NR_146894, intron 26 of 32) 131981 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 138.333-112 chr8 129176323 129176585 + 0.666667 NA Intergenic Intergenic 64786 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 229.834-7 chr4 70327277 70327918 + 0.666667 NA Intergenic Intergenic -7384 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 147.333-24 chr14 55203278 55203738 + 0.666667 NA Intergenic Intergenic -11923 NM_001146015 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 191-28 chr2 33164958 33165493 + 0.666667 NA intron (NM_206943, intron 5 of 33) L2|LINE|L2 30628 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 177.667-39 chr2 130723427 130723835 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger -5439 NM_207364 344561 Hs.452574 NM_207364 ENSG00000173302 GPR148 BTR|PGR6 G protein-coupled receptor 148 protein-coding 136.667-107 chr8 97068340 97068689 + 0.666667 NA intron (NM_016134, intron 7 of 7) AluSq|SINE|Alu 209414 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 144.667-85 chr6 89489858 89490263 + 0.666667 NA intron (NM_001242809, intron 1 of 15) intron (NM_001242809, intron 1 of 15) 56882 NM_014942 22881 Hs.702213 NM_014942 ENSG00000135299 ANKRD6 - ankyrin repeat domain 6 protein-coding 223-36 chr9 83481743 83482324 + 0.666667 NA intron (NM_174938, intron 1 of 13) (AACAA)n|Simple_repeat|Simple_repeat -14291 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 165.167-66 chr9 129942183 129942586 + 0.666667 NA intron (NM_001363755, intron 6 of 15) MER102c|DNA|hAT-Charlie 72779 NR_106914 102466750 NR_106914 ENSG00000276124 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 130.667-66 chr4 46391516 46391759 + 0.666667 NA Intergenic Intergenic -1509 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 117.833-5 chr10 76868414 76868677 + 0.666667 NA Intergenic Intergenic -19499 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 126.333-56 chr2 40624755 40625227 + 0.666667 NA Intergenic L1ME3B|LINE|L1 -112556 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 143.667-108 chr8 135759852 135760174 + 0.666667 NA Intergenic Intergenic 302557 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 158.833-17 chr12 49300567 49300949 + 0.666667 NA intron (NR_120449, intron 4 of 7) AluJr4|SINE|Alu 5611 NM_006262 5630 Hs.37044 NM_006262 ENSG00000135406 PRPH NEF4|PRPH1 peripherin protein-coding 125.833-5 chr1 200081040 200081494 + 0.666667 NA intron (NM_205860, intron 5 of 7) intron (NM_205860, intron 5 of 7) 38442 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 139-81 chr9 35807296 35807716 + 0.666667 NA TTS (NM_001366760) TTS (NM_001366760) 4756 NM_001366760 26206 Hs.256747 NM_012436 ENSG00000137098 SPAG8 BS-84|CILD28|CT142|HSD-1|SMP1|SPAG3|hSMP-1 sperm associated antigen 8 protein-coding 214-13 chr15 59120736 59121425 + 0.666667 NA intron (NM_004701, intron 7 of 8) L1MC4|LINE|L1 15934 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 220.667-12 chr15 62587310 62587935 + 0.666667 NA Intergenic L1ME3G|LINE|L1 57559 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 119.333-85 chr5 104802502 104802796 + 0.666667 NA Intergenic L1PB4|LINE|L1 -296825 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 133.167-48 chr4 145098516 145099101 + 0.666667 NA promoter-TSS (NM_001256707) promoter-TSS (NM_001256707) -267 NM_001256708 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 171.5-57 chr7 32926820 32927399 + 0.666667 NA intron (NR_003500, intron 3 of 5) MLT1A|LTR|ERVL-MaLR 16061 NR_003500 441212 Hs.648086 NM_001039754 ENSG00000205763 RP9P - RP9 pseudogene pseudo 147-58 chr4 62535531 62535812 + 0.666667 NA Intergenic L2|LINE|L2 -373906 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 122.833-92 chr9 78518095 78518393 + 0.666667 NA Intergenic L1M4|LINE|L1 221119 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 123.167-75 chr4 90129307 90129604 + 0.666667 NA intron (NM_001145065, intron 1 of 10) intron (NM_001145065, intron 1 of 10) 1922 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 247.333-7 chr18 2606537 2607004 + 0.666667 NA intron (NM_006101, intron 14 of 16) intron (NM_006101, intron 14 of 16) 35213 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 212.667-52 chrX 99135808 99136246 + 0.666667 NA Intergenic MLT1H|LTR|ERVL-MaLR 1274246 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 177-17 chr14 43682920 43683412 + 0.666667 NA Intergenic Intergenic 824117 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 222-38 chrX 110538146 110538643 + 0.666667 NA Intergenic L1MD1|LINE|L1 18082 NR_002718 6998 Hs.592361 NR_002718 ENSG00000225366 TDGF1P3 CR-3|CRIPTO|CRIPTO-3|CRIPTO3|TDGF1|TDGF2|TDGF3 teratocarcinoma-derived growth factor 1 pseudogene 3 pseudo 158.333-57 chr5 19776140 19776403 + 0.666667 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 110001 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 150.667-98 chr9 30449927 30450365 + 0.666667 NA Intergenic MLT2A2|LTR|ERVL -41692 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 183.667-29 chr16 80715911 80716283 + 0.666667 NA intron (NM_152342, intron 1 of 6) MIR|SINE|MIR 88501 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 231.167-19 chr3 174964216 174964642 + 0.666667 NA intron (NM_207015, intron 1 of 13) L2a|LINE|L2 105095 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 235.667-9 chr2 45656317 45656836 + 0.666667 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 4901 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 122.333-18 chr11 65521527 65522002 + 0.666667 NA Intergenic AluSx1|SINE|Alu -3319 NM_020680 57410 Hs.238839 NM_020680 ENSG00000142186 SCYL1 GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP SCY1 like pseudokinase 1 protein-coding 131.667-20 chr11 56959356 56959636 + 0.666667 NA Intergenic L1MD2|LINE|L1 -29418 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 219.333-33 chr5 99375585 99376002 + 0.666667 NA Intergenic Intergenic -158197 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 216-6 chr11 112990362 112990788 + 0.666667 NA intron (NM_181351, intron 1 of 18) L1MA9|LINE|L1 -27115 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 192.5-51 chr8 87085556 87085911 + 0.666667 NA intron (NM_173538, intron 4 of 10) L1MEf|LINE|L1 219318 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 147-54 chr3 105308876 105309183 + 0.666667 NA Intergenic L1PA7|LINE|L1 -57684 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 143.167-24 chr16 77055929 77056222 + 0.666667 NA Intergenic L1PA16|LINE|L1 -135115 NM_001286640 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 251-24 chr6 79941697 79942235 + 0.666667 NA intron (NM_022726, intron 1 of 5) intron (NM_022726, intron 1 of 5) 5587 NM_022726 6785 Hs.101915 NM_022726 ENSG00000118402 ELOVL4 ADMD|CT118|ISQMR|SCA34|STGD2|STGD3 ELOVL fatty acid elongase 4 protein-coding 244.333-8 chr14 58106838 58107404 + 0.666667 NA intron (NM_001001872, intron 4 of 7) intron (NM_001001872, intron 4 of 7) 45092 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 211.5-4 chr10 35530485 35530879 + 0.666667 NA intron (NM_181698, intron 9 of 11) intron (NM_181698, intron 9 of 11) -74659 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 123-13 chr11 81048756 81048999 + 0.666667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -286074 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 198.667-5 chr1 218577668 218578012 + 0.666667 NA intron (NR_031644, intron 2 of 6) AluJo|SINE|Alu 67745 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 144.167-79 chr9 10288944 10289240 + 0.666667 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 323910 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 147.167-6 chr1 162187380 162187989 + 0.666667 NA intron (NM_014697, intron 2 of 9) intron (NM_014697, intron 2 of 9) 30577 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 155.333-27 chr13 91073149 91073545 + 0.666667 NA Intergenic Intergenic 16270 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 160-30 chr14 70426145 70426451 + 0.666667 NA Intergenic MER34D|LTR|ERV1 -9208 NM_001202547 100529257 Hs.443661 NM_001202547 ENSG00000258644 SYNJ2BP-COX16 - SYNJ2BP-COX16 readthrough protein-coding 175-15 chr11 32896296 32896588 + 0.666667 NA intron (NM_001076786, intron 1 of 12) AluSq2|SINE|Alu 3631 NM_001076786 79832 Hs.369368 NM_024774 ENSG00000060749 QSER1 - glutamine and serine rich 1 protein-coding 118-118 chr8 78014252 78014509 + 0.666667 NA Intergenic Intergenic -501960 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 173.333-42 chr3 69667210 69667517 + 0.666667 NA Intergenic Intergenic -72101 NM_001354605 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 176.5-49 chr4 27856489 27856898 + 0.666667 NA Intergenic L1M3f|LINE|L1 639214 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 147.667-39 chr22 20724451 20724709 + 0.666667 NA intron (NM_058004, intron 42 of 54) AluSx|SINE|Alu 23466 NR_026815 84222 Hs.546454 NM_032262 ENSG00000226287 TMEM191A TMEM191AP transmembrane protein 191A (pseudogene) pseudo 116.333-14 chr10 53662595 53663030 + 0.666667 NA Intergenic LTR38A1|LTR|ERV1 -823418 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 166.333-43 chr2 161108280 161108587 + 0.666667 NA Intergenic Intergenic -28522 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 238.167-15 chr20 49525969 49526615 + 0.666667 NA intron (NM_000961, intron 5 of 9) Kanga2_a|DNA|TcMar-Tc2 41845 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 125.5-68 chr5 164665572 164665789 + 0.666667 NA Intergenic Intergenic 195401 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 175.333-59 chr7 42972384 42972790 + 0.666667 NA Intergenic MLT1J2|LTR|ERVL-MaLR 40211 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 139-43 chr3 136743513 136743816 + 0.666667 NA intron (NM_005862, intron 1 of 33) L1MD|LINE|L1 8714 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 126-14 chr10 78754630 78754889 + 0.666667 NA Intergenic Eulor9A|DNA|DNA 312689 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 157-59 chr3 166194058 166194452 + 0.666667 NA Intergenic MER65D|LTR|ERV1 -356832 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 175.667-45 chr4 58982945 58983300 + 0.666667 NA Intergenic Intergenic -1160 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 320.667-6 chr17 58894131 58894722 + 0.666667 NA intron (NM_014906, intron 1 of 6) Charlie1a|DNA|hAT-Charlie 138557 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 144.667-28 chr12 41169723 41170065 + 0.666667 NA Intergenic LTR81A|LTR|Gypsy -18426 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 172.5-12 chr11 62294829 62295230 + 0.666667 NA Intergenic Intergenic 4046 NM_206998 404552 Hs.473247 NM_206998 ENSG00000197745 SCGB1D4 IIS secretoglobin family 1D member 4 protein-coding 125-103 chr9 21891739 21892095 + 0.666667 NA Intergenic L1PA15|LINE|L1 -75222 NR_024274 51198 Hs.721053 NM_016349 CDKN2A-DT C9orf53|CDKN2A-AS1|bA149I2.3 CDKN2A divergent transcript ncRNA 147.667-54 chr4 113391954 113392246 + 0.666667 NA Intergenic Intergenic 99261 NM_001354280 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 136.833-41 chr3 78812662 78812889 + 0.666667 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 206684 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 200.5-9 chr13 79045862 79046356 + 0.666667 NA Intergenic Intergenic -206059 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 151-2 chr1 81067453 81067907 + 0.666667 NA Intergenic Intergenic -238512 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 180.333-19 chr14 65626060 65626520 + 0.666667 NA intron (NM_004480, intron 4 of 9) intron (NM_004480, intron 4 of 9) 155188 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 138.5-73 chr7 50330577 50331200 + 0.666667 NA intron (NM_001291840, intron 2 of 2) intron (NM_001291840, intron 2 of 2) 11840 NM_001291842 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 211.5-17 chr21 36132612 36133110 + 0.666667 NA non-coding (NR_038893, exon 3 of 3) non-coding (NR_038893, exon 3 of 3) -2218 NM_001236 874 Hs.154510 NM_001236 ENSG00000159231 CBR3 HEL-S-25|SDR21C2|hCBR3 carbonyl reductase 3 protein-coding 131.333-30 chr14 74005058 74005385 + 0.666667 NA intron (NM_001321986, intron 3 of 16) AluSx|SINE|Alu 14067 NM_001330189 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 207.667-46 chr7 35247212 35247694 + 0.666667 NA intron (NM_001166220, intron 3 of 5) intron (NM_001166220, intron 3 of 5) 6647 NM_001077653 57057 Hs.404167 NM_020417 ENSG00000164532 TBX20 ASD4 T-box transcription factor 20 protein-coding 168-83 chr9 124666773 124667349 + 0.666667 NA intron (NR_038975, intron 1 of 1) AluSg7|SINE|Alu 8625 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 161.167-5 chr1 190364838 190365127 + 0.666667 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 111028 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 138.5-30 chr15 26593274 26593529 + 0.666667 NA intron (NM_001191320, intron 2 of 6) L1MB4|LINE|L1 35689 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 114.667-66 chr20 51499409 51499740 + 0.666667 NA intron (NM_012340, intron 3 of 10) AluSx1|SINE|Alu 43145 NM_012340 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 136.333-37 chr17 47748170 47748450 + 0.666667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 15074 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 130.333-73 chr5 18035292 18035617 + 0.666667 NA Intergenic Intergenic 228180 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 150.167-3 chr1 40297518 40297861 + 0.666667 NA Intergenic L2a|LINE|L2 19597 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 150.667-76 chr5 107676803 107677101 + 0.666667 NA Intergenic Intergenic -6015 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 161-58 chr6 28458027 28458468 + 0.666667 NA Intergenic Intergenic -14756 NM_001012455 222696 Hs.721841 NM_001012455 ENSG00000187987 ZSCAN23 ZNF390|ZNF453|dJ29K1.3|dJ29K1.3.1 zinc finger and SCAN domain containing 23 protein-coding 138.667-77 chr5 94902083 94902395 + 0.666667 NA intron (NM_001297777, intron 8 of 19) Charlie7|DNA|hAT-Charlie 179627 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 143-60 chr5 11160362 11160712 + 0.666667 NA intron (NM_001288715, intron 10 of 20) intron (NM_001288715, intron 10 of 20) -399303 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 129.5-40 chr2 36606540 36606766 + 0.666667 NA Intergenic Intergenic -8485 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 154.167-25 chr17 50902064 50902396 + 0.666667 NA Intergenic Intergenic -34252 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 119.333-64 chr3 47179610 47179825 + 0.666667 NA intron (NR_033373, intron 2 of 6) PRIMA4-int|LTR|ERV1 15347 NR_033373 285352 Hs.570631 NR_033373 KIF9-AS1 - KIF9 antisense RNA 1 ncRNA 113.333-59 chr20 17376892 17377196 + 0.666667 NA intron (NM_002594, intron 5 of 11) intron (NM_002594, intron 5 of 11) 150004 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 162.833-53 chr8 127052731 127053158 + 0.666667 NA Intergenic Intergenic -26930 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 147.667-57 chr5 113792149 113792490 + 0.666667 NA Intergenic L1MB4|LINE|L1 278625 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 172-70 chr9 19068956 19069388 + 0.666667 NA intron (NM_001270890, intron 12 of 16) intron (NM_001270890, intron 12 of 16) -5386 NR_003009 677776 Hs.689635 NR_003009 ENSG00000251733 SCARNA8 U92 small Cajal body-specific RNA 8 ncRNA 134-106 chr8 123278835 123279181 + 0.666667 NA Intergenic MIRb|SINE|MIR -3467 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 142.667-75 chr4 158595471 158595735 + 0.666667 NA intron (NR_045581, intron 3 of 17) intron (NR_045581, intron 3 of 17) 73721 NM_001253729 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 204.667-47 chr8 104114894 104115312 + 0.666667 NA intron (NM_001348498, intron 19 of 24) intron (NM_001348498, intron 19 of 24) -108232 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 121.333-20 chr11 109550239 109550592 + 0.666667 NA Intergenic Intergenic 128225 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 140.333-58 chr4 87621470 87621733 + 0.666667 NA Intergenic LTR65|LTR|ERV1 13072 NM_014208 1834 Hs.678914 NM_014208 ENSG00000152591 DSPP DFNA39|DGI1|DMP3|DPP|DSP dentin sialophosphoprotein protein-coding 222.5-6 chr14 62463285 62463926 + 0.666667 NA Intergenic Intergenic -323632 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 137.333-10 chr10 57857842 57858068 + 0.666667 NA Intergenic L3|LINE|CR1 409939 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 174.667-5 chr1 166020350 166020778 + 0.666667 NA Intergenic Intergenic 112643 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 327.5-3 chr2 63972992 63974202 + 0.666667 NA intron (NM_001005739, intron 3 of 22) AluJr4|SINE|Alu 45831 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 143.333-24 chr15 76318625 76318924 + 0.666667 NA Intergenic AluSz|SINE|Alu -7305 NM_000126 2108 Hs.39925 NM_000126 ENSG00000140374 ETFA EMA|GA2|MADD electron transfer flavoprotein subunit alpha protein-coding 134 chr1 18748085 18748354 + 0.666667 NA 3' UTR (NM_001135254, exon 9 of 9) 3' UTR (NM_001135254, exon 9 of 9) 111442 NM_152232 80834 Hs.553548 NM_152232 ENSG00000179002 TAS1R2 GPR71|T1R2|TR2 taste 1 receptor member 2 protein-coding 149.333-38 chr14 84319178 84319470 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -952608 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 140-27 chr15 60653953 60654253 + 0.666667 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) -26573 NM_002943 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 119.5-48 chr2 119762780 119763176 + 0.666667 NA intron (NM_002830, intron 1 of 26) intron (NM_002830, intron 1 of 26) 3056 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 137.333-67 chr3 152647982 152648337 + 0.666667 NA Intergenic Intergenic -186972 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 177.667-4 chr1 166541926 166542271 + 0.666667 NA Intergenic Intergenic -52059 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 152.667-10 chr10 111442569 111443067 + 0.666667 NA Intergenic MLT1L|LTR|ERVL-MaLR 328527 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 168.667-30 chr2 44143796 44144139 + 0.666667 NA Intergenic AluJr4|SINE|Alu -24836 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 129.833-11 chr11 80270808 80271002 + 0.666667 NA Intergenic L1MA9|LINE|L1 491898 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 156-31 chr15 36484844 36485126 + 0.666667 NA Intergenic Intergenic -94641 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 228.5-39 chr8 122666656 122667175 + 0.666667 NA Intergenic L2a|LINE|L2 27191 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 153.667-79 chr8 117640596 117640872 + 0.666667 NA Intergenic L1ME3D|LINE|L1 120021 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 209.333-49 chr9 103726047 103726587 + 0.666667 NA Intergenic Intergenic -273392 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 169 chr1 12013348 12013718 + 0.666667 NA TTS (NM_014874) TTS (NM_014874) -5965 NM_021933 60672 Hs.8595 NM_021933 ENSG00000116691 MIIP IIP45 migration and invasion inhibitory protein protein-coding 171.667-80 chr7 53664395 53664863 + 0.666667 NA intron (NR_038371, intron 5 of 5) L1PB2|LINE|L1 147302 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 159.167-25 chr16 9915240 9915787 + 0.666667 NA intron (NM_001134408, intron 3 of 13) intron (NM_001134408, intron 3 of 13) 266554 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 116-30 chr15 84671108 84671380 + 0.666667 NA intron (NM_001271919, intron 3 of 4) intron (NM_001271919, intron 3 of 4) -13045 NM_021077 4828 Hs.386470 NM_021077 ENSG00000197696 NMB - neuromedin B protein-coding 116.167-67 chr6 141234351 141234822 + 0.666667 NA Intergenic Intergenic 550772 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 133.667-74 chr5 129900709 129901043 + 0.666667 NA Intergenic L2a|LINE|L2 -3589 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 155.333-71 chr4 2550985 2551441 + 0.666667 NA intron (NM_001366318, intron 1 of 20) L1MD|LINE|L1 14566 NM_001366318 8603 Hs.652364 NM_003704 ENSG00000125386 FAM193A C4orf8|RES4-22 family with sequence similarity 193 member A protein-coding 130.667-26 chr14 38743256 38743595 + 0.666667 NA Intergenic Intergenic -139171 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 120.333-49 chr18 1680574 1680836 + 0.666667 NA Intergenic Intergenic -321076 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 203-31 chr4 54698157 54698497 + 0.666667 NA exon (NM_001093772, exon 3 of 21) exon (NM_001093772, exon 3 of 21) 40399 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 229.667-3 chr10 64104030 64104548 + 0.666667 NA Intergenic Intergenic -582399 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 156-95 chr8 139481639 139482203 + 0.666667 NA Intergenic L1M5|LINE|L1 221202 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 141.667-27 chr14 55404090 55404583 + 0.666667 NA intron (NM_014924, intron 1 of 9) intron (NM_014924, intron 1 of 9) 7522 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 207.833-15 chr17 34963980 34964613 + 0.666667 NA TTS (NM_052857) TTS (NM_052857) 2756 NM_052857 91603 Hs.413678 NM_052857 ENSG00000198783 ZNF830 CCDC16|OMCG1 zinc finger protein 830 protein-coding 197.5-23 chr2 25114731 25115320 + 0.666667 NA intron (NM_014971, intron 4 of 22) AluJb|SINE|Alu 53555 NM_001319204 5443 Hs.1897 NM_000939 ENSG00000115138 POMC ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC proopiomelanocortin protein-coding 151.333-83 chr8 26667507 26667834 + 0.666667 NA Intergenic MER41B|LTR|ERV1 89265 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 138.833-10 chr10 23961209 23961690 + 0.666667 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) -247342 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 234-16 chr18 3845460 3846057 + 0.666667 NA promoter-TSS (NM_001242765) promoter-TSS (NM_001242765) -400 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 127.667-12 chr10 94070825 94071149 + 0.666667 NA intron (NM_001288989, intron 2 of 32) MIRb|SINE|MIR -18039 NM_001165979 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 266.667-22 chr8 26319592 26320137 + 0.666667 NA intron (NM_001177591, intron 2 of 9) L1M3|LINE|L1 26648 NM_001177591 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 161.667-44 chr2 80104106 80104462 + 0.666667 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 200468 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 146-75 chr9 111846734 111847168 + 0.666667 NA Intergenic AluSx1|SINE|Alu -49863 NM_003358 7357 Hs.304249 NM_003358 ENSG00000148154 UGCG GCS|GLCT1 UDP-glucose ceramide glucosyltransferase protein-coding 174-4 chr1 87133929 87134474 + 0.666667 NA non-coding (NR_026988, exon 3 of 3) non-coding (NR_026988, exon 3 of 3) 2275 NR_026985 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 221.667-34 chr6 155842878 155843375 + 0.666667 NA Intergenic L1ME1|LINE|L1 -103671 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 168.667-39 chr2 180964047 180964368 + 0.666667 NA Intergenic Intergenic -16178 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 156.834-2 chr17 54365328 54366054 + 0.666667 NA Intergenic Intergenic -535000 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 134.333-57 chr2 76949321 76949535 + 0.666667 NA intron (NR_146416, intron 1 of 1) L2c|LINE|L2 -36537 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 187.167-22 chr20 54906767 54907435 + 0.666667 NA Intergenic L1PA4|LINE|L1 431508 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 342.667-6 chr6 111030462 111031334 + 0.666667 NA Intergenic Intergenic 16656 NR_002932 442245 Hs.551627 NR_002932 GSTM2P1 - glutathione S-transferase mu 2 pseudogene 1 pseudo 153.667-73 chr8 40241196 40241483 + 0.666667 NA Intergenic L1M1|LINE|L1 87857 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 120.333-45 chr14 85615454 85615808 + 0.666667 NA intron (NM_001346143, intron 1 of 1) intron (NM_001346143, intron 1 of 1) 82282 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 147.334-7 chr7 6141379 6141938 + 0.666667 NA intron (NM_032172, intron 7 of 17) AluSx3|SINE|Alu 30479 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 162.667-88 chr9 33338235 33338704 + 0.666667 NA intron (NM_002504, intron 11 of 23) intron (NM_002504, intron 11 of 23) 47953 NM_001318758 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 123.167-103 chrX 151534457 151534703 + 0.666667 NA Intergenic Intergenic 19029 NR_135614 105377213 Hs.147790 NR_135614 ENSG00000214915 LOC105377213 - uncharacterized LOC105377213 ncRNA 138-3 chr1 111940740 111941160 + 0.666667 NA intron (NM_172198, intron 2 of 6) L2a|LINE|L2 31293 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 147-40 chr2 159457229 159457664 + 0.666667 NA intron (NM_001329858, intron 3 of 36) intron (NM_001329858, intron 3 of 36) -157848 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 156.667-67 chr4 99458802 99459091 + 0.666667 NA Intergenic Intergenic -23436 NM_000673 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 248.667 chr1 98491936 98492577 + 0.666667 NA Intergenic Intergenic -169465 NM_015976 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 121.333-113 chr8 134362020 134362477 + 0.666667 NA Intergenic Intergenic -235823 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 274.167-10 chr9 119325295 119326043 + 0.666667 NA intron (NM_014618, intron 1 of 7) intron (NM_014618, intron 1 of 7) 43766 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 197-11 chr12 51521382 51521890 + 0.666667 NA Intergenic MIR|SINE|MIR -69597 NM_001369788 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 120.667-21 chr11 86741868 86742151 + 0.666667 NA Intergenic LTR78|LTR|ERV1 -49062 NM_001293180 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 serine protease 23 protein-coding 170.834-2 chr10 61644454 61645042 + 0.666667 NA Intergenic Intergenic -18181 NM_001366905 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 147-19 chr14 62219346 62219741 + 0.666667 NA Intergenic L1PA16|LINE|L1 -79570 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 130.833-42 chr3 48099333 48099597 + 0.666667 NA Intergenic MER34C2|LTR|ERV1 -10617 NM_002375 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 199-27 chr5 80463597 80464043 + 0.666667 NA intron (NR_146172, intron 17 of 20) THE1D-int|LTR|ERVL-MaLR -24280 NM_205548 167555 Hs.338182 NM_205548 ENSG00000152380 FAM151B UNQ9217 family with sequence similarity 151 member B protein-coding 138-38 chr15 90710598 90711185 + 0.666667 NA intron (NR_120372, intron 2 of 3) intron (NR_120372, intron 2 of 3) 6249 NR_120372 101926895 Hs.564760 NR_120372 ENSG00000259736 CRTC3-AS1 - CRTC3 antisense RNA 1 ncRNA 124.667-33 chr14 62726706 62726956 + 0.666667 NA intron (NM_172375, intron 9 of 9) L1ME3A|LINE|L1 318627 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 179.667-27 chr2 163392270 163392664 + 0.666667 NA Intergenic L2c|LINE|L2 343541 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 144.667-93 chr8 80203509 80203863 + 0.666667 NA Intergenic MER58A|DNA|hAT-Charlie -32122 NR_105034 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 153.333-68 chr6 63338501 63338769 + 0.666667 NA Intergenic L1M2|LINE|L1 -18652 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 168-21 chr15 40091705 40092153 + 0.666667 NA intron (NM_001003943, intron 3 of 3) intron (NM_001003943, intron 3 of 3) 14157 NM_001003942 90427 Hs.591104 NM_033503 ENSG00000104081 BMF - Bcl2 modifying factor protein-coding 194.333-21 chr2 98723897 98724348 + 0.666667 NA intron (NM_012214, intron 2 of 15) L2c|LINE|L2 7010 NM_012214 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 125.5 chr1 48448804 48449158 + 0.666667 NA intron (NM_019073, intron 3 of 12) L1ME1|LINE|L1 23223 NM_019073 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 176.333-6 chr1 210922679 210923098 + 0.666667 NA intron (NM_002238, intron 6 of 10) MamTip2|DNA|hAT-Tip100 210486 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 252.667-6 chr12 40697312 40698154 + 0.666667 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) 5291 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 116.667-5 chr1 173206277 173206591 + 0.666667 NA promoter-TSS (NM_001297562) promoter-TSS (NM_001297562) 897 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 179.667-59 chr9 110448679 110449051 + 0.666667 NA intron (NM_153366, intron 24 of 47) LTR89|LTR|ERVL? -110981 NM_001286947 255220 Hs.147064 NM_001003936 ENSG00000204193 TXNDC8 SPTRX-3|SPTRX3|TRX6|bA427L11.2 thioredoxin domain containing 8 protein-coding 144-14 chr12 48330471 48330810 + 0.666667 NA TTS (NM_181788) TTS (NM_181788) 1660 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 116.667-86 chr4 111918973 111919172 + 0.666667 NA Intergenic Intergenic -226382 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 137.833-39 chr5 119732522 119732911 + 0.666667 NA Intergenic Intergenic 103157 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 161.833-4 chr1 114985884 114986234 + 0.666667 NA intron (NM_001282542, intron 29 of 30) MER2|DNA|TcMar-Tigger -43765 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 132-39 chr18 3509707 3510056 + 0.666667 NA intron (NM_001242762, intron 7 of 9) intron (NM_001242762, intron 7 of 9) 43631 NR_110429 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 236-17 chr4 30740896 30741849 + 0.666667 NA intron (NM_032457, intron 1 of 2) AluJr|SINE|Alu 21003 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 296.667-2 chr1 228968892 228969373 + 0.666667 NA Intergenic L1ME3A|LINE|L1 205669 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 159.167-3 chr1 230488183 230488597 + 0.666667 NA Intergenic Intergenic -62058 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 156.5-89 chr9 79688173 79688513 + 0.666667 NA intron (NR_104239, intron 9 of 20) intron (NR_104239, intron 9 of 20) 115166 NM_001351546 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 145.333-83 chr7 103998995 103999280 + 0.666667 NA Intergenic Arthur1|DNA|hAT-Tip100 -9479 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 286.5-17 chr8 75965215 75965968 + 0.666667 NA Intergenic Intergenic 425623 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 118.667-12 chr10 12613802 12614022 + 0.666667 NA intron (NM_001351032, intron 4 of 11) MIRb|SINE|MIR 35159 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 169-32 chr20 44161163 44161523 + 0.666667 NA intron (NM_020433, intron 1 of 5) intron (NM_020433, intron 1 of 5) 25845 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 132-92 chr8 18281705 18282081 + 0.666667 NA Intergenic Intergenic 60225 NM_001160174 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 163.833-58 chr8 124141236 124141661 + 0.666667 NA intron (NR_103547, intron 1 of 4) MIRb|SINE|MIR 30074 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 175.167-33 chr21 31238229 31238754 + 0.666667 NA intron (NM_001353686, intron 6 of 27) intron (NM_001353686, intron 6 of 27) -77551 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 125-96 chr8 104748775 104749106 + 0.666667 NA Intergenic LTR67B|LTR|ERVL -159916 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 118.5-69 chr3 189946694 189947015 + 0.666667 NA Intergenic Intergenic 116932 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 210.667-58 chr9 106694229 106694862 + 0.666667 NA Intergenic Intergenic 78487 NR_104145 100996590 Hs.147110 NR_104145 ENSG00000234323 LINC01505 - long intergenic non-protein coding RNA 1505 ncRNA 215.333-22 chr2 54265374 54265880 + 0.666667 NA intron (NM_138448, intron 3 of 3) MIRb|SINE|MIR -9398 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 206.667-36 chr5 13922387 13922786 + 0.666667 NA intron (NM_001369, intron 4 of 78) AluSx1|SINE|Alu 21894 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 240.833-19 chr2 222330270 222330961 + 0.666667 NA intron (NR_136642, intron 1 of 3) intron (NR_136642, intron 1 of 3) 9954 NR_136641 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 149.667-12 chr10 59915817 59916248 + 0.666667 NA Intergenic Intergenic -9476 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 115.833-67 chr6 102980543 102980749 + 0.666667 NA Intergenic Intergenic 1581661 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 161.667-72 chr7 3737583 3737897 + 0.666667 NA intron (NM_152744, intron 4 of 44) L1M3b|LINE|L1 -391945 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 230-22 chr3 188938397 188938939 + 0.666667 NA Intergenic LTR17|LTR|ERV1 8971 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 211.833-6 chr10 57368407 57368918 + 0.666667 NA Intergenic MLT1H|LTR|ERVL-MaLR -64103 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 169-40 chr4 49109411 49110007 + 0.666667 NA Intergenic (CATTC)n|Satellite|Satellite 123067 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 115.167-37 chr15 58472867 58473173 + 0.666667 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 25715 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 126.833-2 chr1 64823238 64823468 + 0.666667 NA intron (NM_001366165, intron 11 of 11) intron (NM_001366165, intron 11 of 11) 78278 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 154.833-8 chr10 35387926 35388233 + 0.666667 NA intron (NM_001282852, intron 1 of 8) intron (NM_001282852, intron 1 of 8) 51205 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 165.833-47 chr5 7780935 7781287 + 0.666667 NA intron (NM_020546, intron 18 of 24) intron (NM_020546, intron 18 of 24) 70022 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 156.333-2 chr1 40609390 40609729 + 0.666667 NA Intergenic L1ME5|LINE|L1 56123 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM 3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 154.667-46 chr3 106558291 106558662 + 0.666667 NA Intergenic MER58A|DNA|hAT-Charlie 682162 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 161-70 chr7 72438331 72438700 + 0.666667 NA intron (NM_001363460, intron 1 of 5) intron (NM_001363460, intron 1 of 5) 8628 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 164.167 chr1 53745122 53745414 + 0.666667 NA Intergenic L1MB5|LINE|L1 -6104 NM_001367484 148979 Hs.306691 NM_147193 ENSG00000174332 GLIS1 - GLIS family zinc finger 1 protein-coding 128.667-16 chr10 59129525 59130023 + 0.666667 NA Intergenic Intergenic 46690 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 211.333-34 chr3 26224296 26224922 + 0.666667 NA Intergenic LTR48B|LTR|ERV1 -350914 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 182.667-23 chr15 68613239 68613633 + 0.666667 NA intron (NM_006091, intron 1 of 11) intron (NM_006091, intron 1 of 11) -3104 NM_001190456 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 122.833-39 chr18 4191264 4191551 + 0.666667 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -73195 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 114.333-113 chr6 163085744 163086029 + 0.666667 NA intron (NM_001080379, intron 3 of 4) L2a|LINE|L2 -31725 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 152.833-65 chr7 16884060 16884484 + 0.666667 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -2289 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 215.667-19 chr18 470334 470944 + 0.666667 NA intron (NM_130386, intron 2 of 9) AluJr|SINE|Alu 30062 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 184.333-32 chr20 19408324 19408836 + 0.666667 NA intron (NM_020689, intron 2 of 16) AluSz|SINE|Alu -123984 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 140-16 chr11 124221619 124221956 + 0.666667 NA Intergenic L1M5|LINE|L1 -2852 NM_001291438 26492 Hs.381319 NM_001291438 OR8G2P HSTPCR120|OR8G2|OR8G4|ORL206|ORL486|TPCR120 olfactory receptor family 8 subfamily G member 2 pseudogene protein-coding 229.833-20 chr6 64352655 64353107 + 0.666667 NA intron (NM_001292009, intron 29 of 43) intron (NM_001292009, intron 29 of 43) 546045 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 132.333-58 chr2 115469233 115469489 + 0.666667 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 125546 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 125.333-5 chr1 160086536 160086831 + 0.666667 NA intron (NM_004983, intron 2 of 2) CR1-3_Croc|LINE|CR1 5145 NM_004983 3765 Hs.66726 NM_004983 ENSG00000162728 KCNJ9 GIRK3|KIR3.3 potassium voltage-gated channel subfamily J member 9 protein-coding 139.167-74 chr9 76535599 76535807 + 0.666667 NA Intergenic Intergenic 35070 NM_001097636 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1 protein-coding 197.167 chr1 10943024 10943434 + 0.666667 NA Intergenic Intergenic 23458 NM_001366227 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 157.667-79 chrX 132463537 132463784 + 0.666667 NA intron (NM_001170704, intron 1 of 8) intron (NM_001170704, intron 1 of 8) -23970 NM_133486 55796 Hs.105134 NM_018388 ENSG00000076770 MBNL3 CHCR|MBLX|MBLX39|MBXL muscleblind like splicing regulator 3 protein-coding 138.167-44 chr2 182537015 182537251 + 0.666667 NA Intergenic MLT1H1|LTR|ERVL-MaLR -14288 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 128-60 chr21 10665385 10665681 + 0.666667 NA Intergenic (TCCATTCCAT)n|Simple_repeat|Simple_repeat 144019 NM_199259 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 140-37 chr2 98917584 98917870 + 0.666667 NA intron (NM_207362, intron 1 of 9) L1PB4|LINE|L1 18498 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 157-14 chr11 1368710 1369142 + 0.666667 NA Intergenic Intergenic -21008 NR_046331 9024 Hs.170819 NM_003957 ENSG00000174672 BRSK2 C11orf7|PEN11B|SAD1|SADA|STK29 BR serine/threonine kinase 2 protein-coding 122.5-62 chr3 110817201 110817518 + 0.666667 NA Intergenic L1ME1|LINE|L1 252600 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 209-38 chr5 98787757 98788192 + 0.666667 NA intron (NM_001366510, intron 4 of 4) intron (NM_001366510, intron 4 of 4) 14311 NM_001366508 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 149.333-104 chr9 73174193 73174436 + 0.666667 NA Intergenic L1MC2|LINE|L1 22449 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 175.333-11 chr12 128907111 128907482 + 0.666667 NA intron (NM_001366889, intron 5 of 12) intron (NM_001366889, intron 5 of 12) 53818 NM_001366889 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 132.667-2 chr1 40501321 40501582 + 0.666667 NA Intergenic AluJr|SINE|Alu -7268 NM_001346951 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 196-44 chr3 99250258 99250820 + 0.666667 NA Intergenic Intergenic -348844 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 158.167-53 chr9 98844593 98844947 + 0.666667 NA intron (NM_024642, intron 8 of 9) intron (NM_024642, intron 8 of 9) 37100 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 124.333-91 chr7 2616238 2616533 + 0.666667 NA Intergenic AluJr|SINE|Alu -15601 NM_025250 80727 Hs.440899 NM_025250 ENSG00000136295 TTYH3 - tweety family member 3 protein-coding 131-8 chr11 23759050 23759362 + 0.666667 NA Intergenic Intergenic -340016 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 145.667-50 chr2 110894625 110894995 + 0.666667 NA intron (NM_001371254, intron 10 of 18) L1MDa|LINE|L1 162237 NM_001371254 126.333-19 chr11 111395643 111396115 + 0.666667 NA Intergenic Intergenic -16604 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 homeobox associating factor 1 protein-coding 190.333-10 chr10 82853688 82854190 + 0.666667 NA intron (NR_163252, intron 3 of 8) L1PB|LINE|L1 -621019 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 132.667-41 chr17 61641890 61642188 + 0.666667 NA Intergenic Intergenic -50820 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 226.5-23 chr3 26248351 26248835 + 0.666667 NA Intergenic Intergenic -374213 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 182.667-57 chr7 92548389 92548744 + 0.666667 NA Intergenic L2a|LINE|L2 19771 NM_001363367 84060 Hs.21590 NM_032120 ENSG00000127993 RBM48 C7orf64|HSPC304 RNA binding motif protein 48 protein-coding 305.667-15 chr8 91476844 91477610 + 0.666667 NA Intergenic L1MEc|LINE|L1 227908 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 190.833-39 chr7 53963838 53964193 + 0.666667 NA Intergenic Intergenic -152084 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 216-19 chr3 41367799 41368510 + 0.666667 NA intron (NM_001322500, intron 35 of 35) AluY|SINE|Alu 168649 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 220.667-29 chr5 35296447 35297188 + 0.666667 NA Intergenic L1ME2|LINE|L1 -66330 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 193.667-8 chr12 12577017 12577610 + 0.666667 NA Intergenic L1MA9|LINE|L1 -14450 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 207-3 chr10 94978648 94979170 + 0.666667 NA intron (NM_000771, intron 6 of 8) L1MA1|LINE|L1 40251 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 150-50 chr3 73416446 73416847 + 0.666667 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) 17349 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 144.167-20 chr12 65788052 65788405 + 0.666667 NA intron (NR_026825, intron 1 of 1) MIR|SINE|MIR -36232 NM_001300919 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 121.333-107 chr8 107862803 107863241 + 0.666667 NA Intergenic L1PB1|LINE|L1 218917 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 181-32 chr2 21104204 21104593 + 0.666667 NA Intergenic Intergenic -19588 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 213.667-15 chr19 39965570 39965953 + 0.666667 NA Intergenic Intergenic -5244 NM_153001 5704 Hs.211594 NM_006503 ENSG00000013275 PSMC4 MIP224|RPT3|S6|TBP-7|TBP7 proteasome 26S subunit, ATPase 4 protein-coding 173.5-18 chr14 40050837 40051194 + 0.666667 NA Intergenic Intergenic -618515 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 128-93 chr9 28782653 28783010 + 0.666667 NA intron (NM_001354574, intron 2 of 5) Tigger3a|DNA|TcMar-Tigger -63526 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 235.167 chr1 69794525 69794994 + 0.666667 NA intron (NM_001370785, intron 4 of 26) intron (NM_001370785, intron 4 of 26) -124563 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 117-128 chrX 2900338 2900581 + 0.666667 NA Intergenic AluSx1|SINE|Alu -4445 NR_144459 100506356 Hs.528631 NR_144459 ENSG00000229851 ARSD-AS1 - ARSD antisense RNA 1 ncRNA 211.167-25 chr4 37594179 37594643 + 0.666667 NA TTS (NM_018302) TTS (NM_018302) 10178 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 138-82 chr5 29581228 29581677 + 0.666667 NA Intergenic Intergenic -185476 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 138.667-87 chr6 145390893 145391207 + 0.666667 NA Intergenic MER72|LTR|ERV1 295827 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 262.5-20 chr4 30329299 30330185 + 0.666667 NA Intergenic Intergenic -390627 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 138.667 chr1 20213660 20214073 + 0.666667 NA Intergenic Intergenic -27380 NR_110078 101928017 Hs.550803 NR_110078 ENSG00000225986 UBXN10-AS1 - UBXN10 antisense RNA 1 ncRNA 173.667-42 chr3 190192444 190192737 + 0.666667 NA Intergenic Intergenic -70153 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 173.167-38 chr6 43012555 43013316 + 0.666667 NA TTS (NM_180977) TTS (NM_180977) 1011 NM_014623 4201 Hs.278362 NM_014623 ENSG00000124733 MEA1 HYS|MEA male-enhanced antigen 1 protein-coding 148.167-43 chr2 187701960 187702334 + 0.666667 NA Intergenic Intergenic -147642 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 235.667-20 chr5 8996767 8997357 + 0.666667 NA Intergenic MER65A|LTR|ERV1 56833 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 143.5-34 chr18 63396219 63396484 + 0.666667 NA intron (NM_004869, intron 9 of 10) AluJb|SINE|Alu 26125 NM_004869 9525 Hs.126550 NM_004869 ENSG00000119541 VPS4B MIG1|SKD1|SKD1B|VPS4-2 vacuolar protein sorting 4 homolog B protein-coding 215.667-54 chrX 75301132 75301722 + 0.666667 NA intron (NM_001307944, intron 6 of 6) intron (NM_001307944, intron 6 of 6) 27342 NM_145052 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 132.667-101 chr9 26512020 26512271 + 0.666667 NA Intergenic Intergenic 380657 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 168.167-45 chr5 38776765 38777140 + 0.666667 NA intron (NR_109951, intron 2 of 3) L1MEf|LINE|L1 -56679 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 143-41 chr20 44044370 44044728 + 0.666667 NA intron (NM_001098797, intron 3 of 8) LTR37A|LTR|ERV1 98653 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 155.333-24 chr12 107039723 107040156 + 0.666667 NA intron (NM_004075, intron 1 of 12) L1MB1|LINE|L1 -52773 NM_025198 80298 Hs.5009 NM_025198 ENSG00000120832 MTERF2 MTERFD3|mTERFL mitochondrial transcription termination factor 2 protein-coding 140.5-10 chr10 98288614 98288880 + 0.666667 NA Intergenic AluSq|SINE|Alu -20553 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 195.333-49 chr5 150715195 150715785 + 0.666667 NA intron (NM_001135643, intron 13 of 13) intron (NM_001135643, intron 13 of 13) -14428 NM_018047 55696 Hs.713564 NM_018047 ENSG00000086589 RBM22 Cwc2|ZC3H16|fSAP47 RNA binding motif protein 22 protein-coding 116.833-36 chr3 49585922 49586337 + 0.666667 NA intron (NM_003458, intron 1 of 11) L1MA1|LINE|L1 31652 NM_003458 8927 Hs.194684 NM_003458 ENSG00000164061 BSN ZNF231 bassoon presynaptic cytomatrix protein protein-coding 125.667-54 chr2 40358149 40358422 + 0.666667 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 72019 NM_021097 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 155.5-49 chr6 68965796 68966180 + 0.666667 NA intron (NM_001704, intron 8 of 31) intron (NM_001704, intron 8 of 31) 330706 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 162.333-50 chr4 36548223 36548673 + 0.666667 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) 93452 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 115.333-3 chr1 87009868 87010233 + 0.666667 NA intron (NM_012262, intron 1 of 6) AluY|SINE|Alu 95415 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 166-6 chr1 231390327 231390640 + 0.666667 NA intron (NM_022051, intron 1 of 4) MIRb|SINE|MIR 34561 NM_022051 54583 Hs.444450 NM_022051 ENSG00000135766 EGLN1 C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia inducible factor 1 protein-coding 138-29 chr14 30936787 30937095 + 0.666667 NA intron (NM_001083893, intron 5 of 17) intron (NM_001083893, intron 5 of 17) -47133 NR_038356 100506071 Hs.729195 NR_038356 ENSG00000258525 LOC100506071 - uncharacterized LOC100506071 ncRNA 157.333-58 chr5 72616947 72617284 + 0.666667 NA intron (NR_105007, intron 1 of 2) L1ME1|LINE|L1 43554 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 146.333-31 chr14 63450195 63450538 + 0.666667 NA TTS (NM_001354926) TTS (NM_001354926) 57872 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 179-11 chr14 58969268 58969695 + 0.666667 NA intron (NR_110547, intron 4 of 5) MIRb|SINE|MIR 141193 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 115.5-99 chr8 107916094 107916564 + 0.666667 NA intron (NM_001282863, intron 4 of 4) MER41-int|LTR|ERV1 165610 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 137.333-97 chr8 87456773 87457319 + 0.666667 NA Intergenic Intergenic 416969 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 167.667-15 chr11 61435162 61435544 + 0.666667 NA intron (NM_017841, intron 1 of 3) L1M3c|LINE|L1 5228 NM_017841 54949 Hs.313247 NM_017841 ENSG00000167985 SDHAF2 C11orf79|PGL2|SDH5 succinate dehydrogenase complex assembly factor 2 protein-coding 128.333-30 chr13 50879294 50879663 + 0.666667 NA Intergenic MER58A|DNA|hAT-Charlie -30200 NM_024570 79621 Hs.306291 NM_024570 ENSG00000136104 RNASEH2B AGS2|DLEU8 ribonuclease H2 subunit B protein-coding 158.167-49 chr8 48218129 48218416 + 0.666667 NA Intergenic Intergenic 209841 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 122-58 chr4 30740229 30740501 + 0.666667 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 19996 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 126.833-72 chr9 30888258 30888635 + 0.666667 NA Intergenic Intergenic -479992 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 175.333-33 chr22 47420261 47420628 + 0.666667 NA Intergenic Intergenic 66667 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 246.333-8 chr13 22801096 22801502 + 0.666667 NA Intergenic Intergenic 96882 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 132.333-65 chr21 14655244 14655621 + 0.666667 NA Intergenic L1M5|LINE|L1 -12325 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 171.667-30 chr15 60203811 60204156 + 0.666667 NA Intergenic Intergenic 194003 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 168.333-11 chr12 39787995 39788443 + 0.666667 NA intron (NM_052885, intron 7 of 9) MER44B|DNA|TcMar-Tigger 162036 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 174.167-25 chr3 115441469 115441948 + 0.666667 NA Intergenic L2a|LINE|L2 -181802 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 164.667-68 chr6 136573594 136573992 + 0.666667 NA intron (NM_005923, intron 25 of 29) intron (NM_005923, intron 25 of 29) -22974 NM_001198617 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 147-38 chr2 103815649 103815972 + 0.666667 NA Intergenic Intergenic 592522 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 162.333-64 chr6 68041132 68041582 + 0.666667 NA Intergenic Intergenic -13994 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 176-22 chr22 25076447 25076771 + 0.666667 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) 36083 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 239.5-27 chr8 128511118 128511857 + 0.666667 NA intron (NR_121672, intron 2 of 7) Charlie15b|DNA|hAT-Charlie 53192 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 115.167-52 chr2 29641616 29642005 + 0.666667 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -166433 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 164.5-40 chr22 29620828 29621330 + 0.666667 NA intron (NM_181831, intron 1 of 14) intron (NM_181831, intron 1 of 14) 17446 NM_181825 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 116.333-46 chr19 1916558 1916909 + 0.666667 NA intron (NM_079834, intron 2 of 6) AluJo|SINE|Alu 11334 NM_138422 113179 Hs.144980 NM_138422 ENSG00000213638 ADAT3 FWP005|MRT36|MST121|MSTP121|S863-5|TAD3 adenosine deaminase tRNA specific 3 protein-coding 153.167-20 chr15 66835457 66835776 + 0.666667 NA Intergenic MLT1F2|LTR|ERVL-MaLR 120899 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 173.667-57 chr6 82073453 82073845 + 0.666667 NA intron (NR_149135, intron 1 of 3) intron (NR_149135, intron 1 of 3) 28116 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 252 chr1 17455662 17456222 + 0.666667 NA Intergenic AluSq2|SINE|Alu -16265 NM_018715 55920 Hs.380857 NM_018715 ENSG00000179051 RCC2 TD-60 regulator of chromosome condensation 2 protein-coding 137.833-15 chr15 56651069 56651544 + 0.666667 NA intron (NM_001002843, intron 18 of 20) MamSINE1|SINE|tRNA-RTE 82780 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 129-89 chr6 128652927 128653273 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -132501 NM_001291981 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 120.333-103 chr6 138064586 138064806 + 0.666667 NA Intergenic Intergenic 42723 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 166.5-55 chr7 77503933 77504286 + 0.666667 NA Intergenic MIR|SINE|MIR -33186 NM_002835 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 137-100 chr9 95247957 95248418 + 0.666667 NA intron (NM_001243744, intron 2 of 13) intron (NM_001243744, intron 2 of 13) 69067 NM_001243743 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 197.666 chr1 186333422 186333994 + 0.666667 NA intron (NM_003292, intron 36 of 50) intron (NM_003292, intron 36 of 50) 37435 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 168-64 chr5 152552217 152552628 + 0.666667 NA Intergenic L1MA10|LINE|L1 -147143 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 138.333-65 chr2 207383191 207383464 + 0.666667 NA Intergenic L1MA4|LINE|L1 -113903 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 116.667-82 chr4 68226678 68226897 + 0.666667 NA 3' UTR (NM_182502, exon 10 of 10) 3' UTR (NM_182502, exon 10 of 10) -8707 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 175 chr1 25053253 25053745 + 0.666667 NA Intergenic MIR|SINE|MIR 29996 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 118.667-55 chr2 10098420 10098723 + 0.666667 NA Intergenic Intergenic -18160 NM_001037160 192668 Hs.27092 NM_001037160 ENSG00000205795 CYS1 - cystin 1 protein-coding 129-91 chr7 3516554 3516831 + 0.666667 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 215440 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 181.333-26 chr18 42054829 42055320 + 0.666667 NA intron (NM_001308020, intron 20 of 23) MSTB1|LTR|ERVL-MaLR 99840 NM_002647 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 175.333-57 chr6 66002982 66003300 + 0.666667 NA Intergenic Intergenic 215262 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 181.667-2 chr1 48498975 48499309 + 0.666667 NA Intergenic Intergenic -26934 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 124-74 chr5 99798269 99798556 + 0.666667 NA Intergenic MLT2A1|LTR|ERVL 264422 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 211.666-2 chr12 2548327 2548942 + 0.666667 NA intron (NM_199460, intron 9 of 49).2 intron (NM_199460, intron 9 of 49).2 123586 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 149.667-15 chr12 26025734 26026157 + 0.666667 NA intron (NM_001164747, intron 2 of 5) L1MB8|LINE|L1 -26619 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 126.667-17 chr13 66291910 66292182 + 0.666667 NA Intergenic Intergenic 73796 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 313.333-6 chr4 122329971 122330817 + 0.666667 NA intron (NM_015312, intron 64 of 83) L1MB1|LINE|L1 -48617 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 179.333-42 chr4 88607665 88608126 + 0.666667 NA intron (NM_001318505, intron 3 of 8) intron (NM_001318505, intron 3 of 8) 15415 NM_014606 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 134.5-15 chr10 64792951 64793332 + 0.666667 NA Intergenic Intergenic -32387 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 121-78 chr6 160505947 160506193 + 0.666667 NA intron (NR_028092, intron 1 of 9) L1P4a|LINE|L1 5054 NR_028092 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 219.167-3 chr1 220787337 220787944 + 0.666667 NA intron (NM_022746, intron 1 of 6) intron (NM_022746, intron 1 of 6) 727 NM_022746 64757 Hs.497816 NM_022746 ENSG00000186205 MARC1 MOSC1 mitochondrial amidoxime reducing component 1 protein-coding 215.333-42 chr6 26739969 26740391 + 0.666667 NA Intergenic Intergenic -80428 NM_001242799 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 204.834-10 chr6 97063494 97064062 + 0.666667 NA intron (NM_001286254, intron 3 of 8) MER5A|DNA|hAT-Charlie 53702 NM_001323261 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 196.833-23 chr8 81953926 81954326 + 0.666667 NA Intergenic AluSx1|SINE|Alu -111840 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 144.333-80 chr7 45694447 45694719 + 0.666667 NA intron (NM_021116, intron 14 of 19) L1M5|LINE|L1 74435 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPTIN7P2 SEPT13|SEPT7B|SEPT7P2 septin 7 pseudogene 2 pseudo 145-13 chr10 102983450 102983861 + 0.666667 NA intron (NM_199076, intron 1 of 6) AluJb|SINE|Alu -65320 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 231.333-11 chr12 126762311 126762742 + 0.666667 NA intron (NR_033878, intron 1 of 4) THE1B|LTR|ERVL-MaLR 9736 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 236-24 chr5 121963534 121964182 + 0.666667 NA intron (NM_152546, intron 1 of 7) intron (NM_152546, intron 1 of 7) 1883 NM_152546 153443 Hs.107622 NM_152546 ENSG00000151304 SRFBP1 BUD22|P49|Rlb1|STRAP|p49/STRAP serum response factor binding protein 1 protein-coding 209.667-5 chr10 15646204 15646674 + 0.666667 NA intron (NM_001291494, intron 11 of 28) intron (NM_001291494, intron 11 of 28) 73483 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 262.167-10 chr2 82655581 82656340 + 0.666667 NA Intergenic L1MC3|LINE|L1 -200843 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 177-70 chr8 137332397 137332730 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger 81025 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 168-60 chr5 128119298 128119759 + 0.666667 NA intron (NM_001046, intron 4 of 26) L1PA3|LINE|L1 35762 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 126.833-22 chr11 38241684 38242045 + 0.666667 NA Intergenic L1MEc|LINE|L1 303263 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 152-21 chr14 46224166 46224399 + 0.666667 NA intron (NR_102702, intron 3 of 3) AluYm1|SINE|Alu 160123 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 144.333-63 chr4 98314735 98315105 + 0.666667 NA intron (NM_021159, intron 2 of 14) intron (NM_021159, intron 2 of 14) 53536 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 144.667-94 chr8 85525987 85526306 + 0.666667 NA Intergenic Intergenic -61231 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 113.667-9 chr1 205209236 205209438 + 0.666667 NA intron (NM_199462, intron 1 of 11) intron (NM_199462, intron 1 of 11) 2365 NM_199462 25778 Hs.6874 NM_015375 ENSG00000133059 DSTYK CAKUT1|DustyPK|HDCMD38P|RIP5|RIPK5|SPG23 dual serine/threonine and tyrosine protein kinase protein-coding 114.667 chr1 36132117 36132510 + 0.666667 NA Intergenic MIRc|SINE|MIR -7091 NM_005202 1296 Hs.353001 NM_005202 ENSG00000171812 COL8A2 FECD|FECD1|PPCD|PPCD2 collagen type VIII alpha 2 chain protein-coding 275.667-8 chr15 57271281 57271793 + 0.666667 NA intron (NM_001322152, intron 18 of 20) L1P2|LINE|L1 7120 NR_145748 109616990 NR_145748 ENSG00000239035 SNORD13D - small nucleolar RNA, C/D box 13D snoRNA 134-43 chr14 62195925 62196160 + 0.666667 NA Intergenic L1MC1|LINE|L1 -56069 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 151.667-84 chr7 133904926 133905256 + 0.666667 NA intron (NM_021807, intron 12 of 17) intron (NM_021807, intron 12 of 17) -80203 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 121.167-4 chr1 89624539 89624750 + 0.666667 NA TTS (NR_033981) TTS (NR_033981) 8250 NR_033981 400761 Hs.741594 NR_033981 ENSG00000231999 LRRC8C-DT - LRRC8C divergent transcript ncRNA 156.667-21 chr11 77726748 77727083 + 0.666667 NA intron (NM_016578, intron 4 of 15) MIR3|SINE|MIR -89109 NM_001311199 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 139.667-23 chr13 34057623 34058028 + 0.666667 NA Intergenic AluJr|SINE|Alu 239676 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 141.167-66 chr6 20573805 20574063 + 0.666667 NA intron (NM_017774, intron 4 of 15) MamSINE1|SINE|tRNA-RTE 39477 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 122-59 chr4 48629995 48630546 + 0.666667 NA intron (NM_015030, intron 4 of 63) intron (NM_015030, intron 4 of 63) 140018 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 128.5-10 chr10 31779433 31779831 + 0.666667 NA Intergenic Intergenic 129294 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 145.667-45 chr18 69610975 69611409 + 0.666667 NA intron (NM_152721, intron 3 of 7) intron (NM_152721, intron 3 of 7) 141261 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 154.333-35 chr18 30450889 30451321 + 0.666667 NA Intergenic Intergenic 152195 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 166.667-34 chr3 85619313 85619781 + 0.666667 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) -106935 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 219.833-9 chr15 71960151 71960557 + 0.666667 NA intron (NM_006901, intron 13 of 41) MSTB|LTR|ERVL-MaLR 149800 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 152.667-86 chr8 137949587 137949956 + 0.666667 NA intron (NR_161374, intron 2 of 7) MLT1A0|LTR|ERVL-MaLR 133774 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 115.333-70 chr3 112171744 112171930 + 0.666667 NA intron (NM_001320531, intron 22 of 27).2 L1MD|LINE|L1 38414 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 143.167-64 chr5 23882925 23883227 + 0.666667 NA Intergenic L1MA9|LINE|L1 -68272 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 132.333-114 chr9 85530976 85531227 + 0.666667 NA Intergenic MLT1E2|LTR|ERVL-MaLR 210928 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 141.333-72 chr5 5657407 5657720 + 0.666667 NA Intergenic MER66C|LTR|ERV1 234886 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 244.667-9 chr14 67865678 67866153 + 0.666667 NA intron (NM_133509, intron 5 of 10) L1MC5|LINE|L1 42323 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 163.667-37 chr2 67898024 67898472 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR -72686 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 119.667-37 chr19 33224802 33225075 + 0.666667 NA intron (NM_019849, intron 1 of 10) intron (NM_019849, intron 1 of 10) 912 NM_019849 56301 Hs.58679 NM_019849 ENSG00000130876 SLC7A10 ASC1|HASC-1|asc-1 solute carrier family 7 member 10 protein-coding 157.5-71 chr9 9049886 9050154 + 0.666667 NA intron (NM_002839, intron 10 of 45) MIRc|SINE|MIR 192002 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 116.667-47 chr18 3896923 3897205 + 0.666667 NA TTS (NR_038895) TTS (NR_038895) 11711 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 113.667-18 chr10 62567180 62567430 + 0.666667 NA intron (NM_199452, intron 1 of 6) MIR|SINE|MIR 46857 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 159.167-10 chr10 91583985 91584464 + 0.666667 NA intron (NR_024467, intron 1 of 4) AluJb|SINE|Alu 27236 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 154.333-61 chr5 125041670 125041914 + 0.666667 NA intron (NR_109882, intron 1 of 5) intron (NR_109882, intron 1 of 5) 4961 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 141-11 chr10 95747340 95747831 + 0.666667 NA intron (NM_001098175, intron 1 of 9) intron (NM_001098175, intron 1 of 9) -8067 NM_001164181 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 143-3 chr1 106918940 106919310 + 0.666667 NA Intergenic Tigger15a|DNA|TcMar-Tigger 100886 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 151.667-23 chr14 58050215 58050483 + 0.666667 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 101864 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 186.5-37 chr2 57120422 57120908 + 0.666667 NA Intergenic Tigger4b|DNA|TcMar-Tigger -786986 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 146-48 chr3 5261214 5261486 + 0.666667 NA Intergenic Intergenic -11095 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 162.333-49 chr3 78224808 78225249 + 0.666667 NA Intergenic L2|LINE|L2 -176065 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 171.5-26 chr17_JH159146v1_alt 97011 97319 + 0.666667 NA Intergenic Intergenic -10254 NM_015515 25984 Hs.9029 NM_015515 ENSG00000108244 KRT23 CK23|HAIK1|K23 keratin 23 protein-coding 224.167-7 chr14 65405492 65406354 + 0.666667 NA Intergenic MLT1O|LTR|ERVL-MaLR -4669 NM_004480 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 152.333-43 chr3 96908920 96909190 + 0.666667 NA intron (NM_001080448, intron 2 of 17) intron (NM_001080448, intron 2 of 17) 94461 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 190.667-59 chr8 123850601 123850977 + 0.666667 NA Intergenic L1ME3|LINE|L1 -1198 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 116.167-9 chr1 172128858 172129263 + 0.666667 NA intron (NR_146559, intron 14 of 20) Charlie7|DNA|hAT-Charlie -9748 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 333.5-7 chr7 125678644 125679451 + 0.666667 NA Intergenic L1M5|LINE|L1 -414756 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 143.333-50 chr21 44644754 44645077 + 0.666667 NA intron (NM_144991, intron 1 of 11) HAL1ME|LINE|L1 -1499 NM_198692 386678 Hs.58076 NM_198692 ENSG00000243489 KRTAP10-11 KAP10.11|KAP10.9|KAP18-9|KAP18.11|KRTAP10-9|KRTAP10.9|KRTAP18-11|KRTAP18-9|KRTAP18.11|KRTAP18.9 keratin associated protein 10-11 protein-coding 174.833-20 chr2 22149124 22149688 + 0.666667 NA Intergenic L1PB4|LINE|L1 -387073 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 116.333-12 chr10 34596982 34597259 + 0.666667 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 218176 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 180.333-21 chr16 3792877 3793361 + 0.666667 NA intron (NM_004380, intron 4 of 30) intron (NM_004380, intron 4 of 30) -75595 NM_001272049 10131 Hs.30345 NM_016292 ENSG00000126602 TRAP1 HSP 75|HSP75|HSP90L|TRAP-1 TNF receptor associated protein 1 protein-coding 134.333-18 chr11 10152128 10152387 + 0.666667 NA intron (NM_030962, intron 2 of 39) intron (NM_030962, intron 2 of 39) 141950 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 120.5-90 chr8 126334808 126335026 + 0.666667 NA Intergenic Intergenic 9422 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 173.667-3 chr1 207629931 207630401 + 0.666667 NA intron (NM_000573, intron 37 of 38) intron (NM_000573, intron 37 of 38) -14967 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 120.333-19 chr10 69583645 69583888 + 0.666667 NA Intergenic Intergenic -10344 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 199.667-30 chr2 179362173 179362554 + 0.666667 NA Intergenic MIRb|SINE|MIR -97531 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 161.667-43 chr2 79351805 79352136 + 0.666667 NA Intergenic L1PA16|LINE|L1 148874 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 139.833-64 chr5 101480523 101480774 + 0.666667 NA Intergenic Intergenic -577366 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 188-8 chr10 54281060 54281460 + 0.666667 NA intron (NM_001354411, intron 8 of 34) intron (NM_001354411, intron 8 of 34) -204970 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 126-24 chr13 57578204 57578453 + 0.666667 NA Intergenic L1PB2|LINE|L1 -53416 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 139.667-90 chr8 72560483 72560740 + 0.666667 NA intron (NM_004770, intron 1 of 2) intron (NM_004770, intron 1 of 2) 23386 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 281.167 chr11 81295506 81296132 + 0.666667 NA Intergenic Intergenic -533016 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 153.333-78 chr7 51084107 51084440 + 0.666667 NA intron (NM_001287436, intron 7 of 13) intron (NM_001287436, intron 7 of 13) 232536 NM_001287438 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 217.833-23 chr7 92183043 92183501 + 0.666667 NA Intergenic AluSx|SINE|Alu -17996 NM_001161528 401387 Hs.671729 NM_001045475 ENSG00000240720 LRRD1 - leucine rich repeats and death domain containing 1 protein-coding 120.833-35 chr2 156691377 156691744 + 0.666667 NA Intergenic Intergenic 255181 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 166-18 chr12 39691404 39691785 + 0.666667 NA intron (NM_001031748, intron 10 of 12) intron (NM_001031748, intron 10 of 12) 65411 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 136-20 chr12 73280480 73280839 + 0.666667 NA Intergenic Kanga1d|DNA|TcMar-Tc2 121469 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 164-44 chr3 182766157 182766425 + 0.666667 NA Intergenic Intergenic -27213 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 163.167-23 chr2 105798816 105799238 + 0.666667 NA intron (NM_003581, intron 1 of 4) L1ME4b|LINE|L1 -52820 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 183.167-20 chr18 7231249 7231570 + 0.666667 NA exon (NM_001105581, exon 1 of 1) exon (NM_001105581, exon 1 of 1) 305 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 166-64 chr7 91036292 91036604 + 0.666667 NA intron (NM_012395, intron 9 of 13) MER8|DNA|TcMar-Tigger -227985 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 153.167-13 chr12 4670357 4670629 + 0.666667 NA intron (NM_005002, intron 8 of 10) intron (NM_005002, intron 8 of 10) 21379 NM_005002 4704 Hs.75227 NM_005002 ENSG00000139180 NDUFA9 CC6|CI-39k|CI39k|COQ11|MC1DN26|NDUFS2L|SDR22E1 NADH:ubiquinone oxidoreductase subunit A9 protein-coding 148-3 chr1 86707215 86707526 + 0.666667 NA intron (NM_001206653, intron 1 of 7) L2a|LINE|L2 2794 NM_001206652 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 229.333-18 chr2 162996802 162997254 + 0.666667 NA Intergenic Intergenic -158261 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 165-30 chr20 33713639 33713994 + 0.666667 NA intron (NM_007238, intron 2 of 3) intron (NM_007238, intron 2 of 3) 6494 NM_183397 11264 Hs.654857 NM_007238 ENSG00000101417 PXMP4 PMP24 peroxisomal membrane protein 4 protein-coding 229-41 chr7 23710762 23711269 + 0.666667 NA intron (NM_001260504, intron 1 of 23) intron (NM_001260504, intron 1 of 23) 796 NM_001260505 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 294.5-5 chr13 94586130 94586694 + 0.666667 NA intron (NR_130732, intron 3 of 10) L1MEd|LINE|L1 9740 NR_130731 23483 Hs.12393 NM_014305 ENSG00000088451 TGDS CATMANS|SDR2E1|TDPGD TDP-glucose 4,6-dehydratase protein-coding 179-45 chr5 100995418 100995823 + 0.666667 NA Intergenic Intergenic -92338 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 157.5-61 chr6 72175215 72175706 + 0.666667 NA intron (NM_014989, intron 4 of 33) AluSq|SINE|Alu -37433 NM_001350439 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 153.333-48 chr3 23541531 23541885 + 0.666667 NA intron (NM_001370225, intron 5 of 5) intron (NM_001370225, intron 5 of 5) -264247 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 188.667-33 chr22 29845759 29846077 + 0.666667 NA Intergenic L2c|LINE|L2 -7644 NM_001369947 84164 Hs.731754 NM_032204 ENSG00000100325 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 144.667-4 chr1 115669540 115669762 + 0.666667 NA intron (NM_001172411, intron 4 of 7) THE1B|LTR|ERVL-MaLR 27022 NM_001172412 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 120.667-44 chr15 67684645 67684974 + 0.666667 NA intron (NM_001206804, intron 13 of 21) L1MEc|LINE|L1 135715 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 127.333-34 chr14 46805564 46806065 + 0.666667 NA Intergenic Intergenic -154033 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 138.5-18 chr11 114990949 114991389 + 0.666667 NA Intergenic Intergenic 312642 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 173.333-32 chr2 174165905 174166191 + 0.666667 NA intron (NM_001011708, intron 3 of 9) AluSz|SINE|Alu 82484 NM_001328688 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 219.833-21 chr8 117450032 117450395 + 0.666667 NA Intergenic Intergenic -70500 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 190-61 chr8 128548648 128549033 + 0.666667 NA intron (NR_121672, intron 2 of 7) AluSz6|SINE|Alu 15839 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 168-5 chr1 191991118 191991573 + 0.666667 NA Intergenic L1MA1|LINE|L1 -167117 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 164.333-41 chr3 50900938 50901258 + 0.666667 NA intron (NM_004947, intron 4 of 52) L1PA7|LINE|L1 226018 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 136-43 chr20 47141143 47141549 + 0.666667 NA intron (NM_172110, intron 9 of 13) MER5B|DNA|hAT-Charlie -25621 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 181.667-11 chr13 66588633 66589155 + 0.666667 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) -236275 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 169.333-8 chr10 39148496 39148901 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 452102 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 199-22 chr4 56494338 56495029 + 0.666667 NA intron (NR_151856, intron 17 of 19) AluSx|SINE|Alu -10526 NM_206919 132946 Hs.444449 NM_206919 ENSG00000196503 ARL9 - ADP ribosylation factor like GTPase 9 protein-coding 178.5-3 chr1 90869915 90870439 + 0.666667 NA Intergenic MIR|SINE|MIR 18418 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 121.167-11 chr1 217315085 217315307 + 0.666667 NA Intergenic ERVL-B4-int|LTR|ERVL -177494 NM_001243511 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 208.334-8 chr7 79217260 79218004 + 0.666667 NA intron (NM_001301128, intron 1 of 20) MIR|SINE|MIR 208644 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 159.333-26 chr14 60848067 60848432 + 0.666667 NA intron (NM_002431, intron 6 of 7) L1M4a2|LINE|L1 113488 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 120-58 chr2 121979994 121980226 + 0.666667 NA Intergenic L1ME1|LINE|L1 224459 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 209.333-45 chr6 112000374 112000978 + 0.666667 NA Intergenic Intergenic -53399 NM_003880 8838 Hs.558428 NM_003880 ENSG00000112761 CCN6 LIBC|PPAC|PPD|WISP-3|WISP3 cellular communication network factor 6 protein-coding 123.833-15 chr12 26994608 26994847 + 0.666667 NA intron (NM_016551, intron 5 of 11) MER5A1|DNA|hAT-Charlie 19657 NM_016551 51768 Hs.438641 NM_016551 ENSG00000064115 TM7SF3 - transmembrane 7 superfamily member 3 protein-coding 165-59 chr8 86711457 86711838 + 0.666667 NA intron (NM_019098, intron 3 of 17) intron (NM_019098, intron 3 of 17) 32028 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 176.667-75 chr8 28607099 28607396 + 0.666667 NA Intergenic AluSx|SINE|Alu 94217 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 166.333-78 chr8 53100811 53101294 + 0.666667 NA Intergenic Intergenic 150585 NM_000912 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 236.5-19 chr3 35494226 35494701 + 0.666667 NA Intergenic Intergenic -100440 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 199-4 chr10 121388023 121388417 + 0.666667 NA Intergenic L1PA15|LINE|L1 143094 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 214-34 chr5 25420170 25420662 + 0.666667 NA Intergenic Intergenic 229463 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 257.167-12 chr3 119734772 119735607 + 0.666667 NA intron (NM_033364, intron 10 of 17) L1MCa|LINE|L1 32167 NM_001320317 89876 Hs.341906 NM_033364 ENSG00000183833 MAATS1 AAT1|AAT1alpha|C3orf15|CFAP91|CaM-IP2|SPATA26 MYCBP associated and testis expressed 1 protein-coding 162.5-18 chr12 112361872 112362196 + 0.666667 NA intron (NM_001109662, intron 1 of 75) intron (NM_001109662, intron 1 of 75) 20397 NM_001109662 283450 Hs.530943 NM_173813 ENSG00000173064 HECTD4 C12ord51|C12orf51|HEEL|POTAGE HECT domain E3 ubiquitin protein ligase 4 protein-coding 171.667-26 chr14 75201229 75201659 + 0.666667 NA Intergenic Intergenic -24832 NM_006827 10972 Hs.74137 NM_006827 ENSG00000170348 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1 transmembrane p24 trafficking protein 10 protein-coding 186.833-16 chr17 11492858 11493441 + 0.666667 NA intron (NM_001173462, intron 3 of 4) intron (NM_001173462, intron 3 of 4) -105321 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 176.833-21 chr3 125500830 125501132 + 0.666667 NA intron (NR_073435, intron 1 of 12) intron (NR_073435, intron 1 of 12) 19221 NM_003794 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 117.667-16 chr10 55841388 55841637 + 0.666667 NA Intergenic Intergenic -213570 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 126.333-57 chr2 51902377 51902582 + 0.666667 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -468169 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 193-12 chr12 15820256 15820774 + 0.666667 NA Intergenic AluSz|SINE|Alu -31127 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 194.667-51 chr5 25922856 25923256 + 0.666667 NA Intergenic Intergenic 732103 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 169.167-11 chr14 28960176 28960600 + 0.666667 NA Intergenic Intergenic -174601 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 134.5-14 chr10 61326479 61326771 + 0.666667 NA Intergenic Intergenic -126014 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 341.666 chr6 88477151 88478143 + 0.666667 NA Intergenic MER66C|LTR|ERV1 61722 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 146.333-63 chr3 79377819 79378248 + 0.666667 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -33694 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 143.667-44 chr15 93641143 93641469 + 0.666667 NA Intergenic Intergenic -215254 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 238.5-11 chr14 83305544 83305964 + 0.666667 NA Intergenic Intergenic 663122 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 154.167-38 chr20 42700392 42700816 + 0.666667 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 15121 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 216.833-8 chr12 97762539 97762928 + 0.666667 NA Intergenic MIR|SINE|MIR -6216 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 179.667-2 chr1 204099960 204100304 + 0.666667 NA intron (NM_005686, intron 1 of 13) AluJr|SINE|Alu 27017 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY-box transcription factor 13 protein-coding 158.5-19 chr13 89256534 89256931 + 0.666667 NA intron (NR_047025, intron 1 of 3) intron (NR_047025, intron 1 of 3) -19842 NR_131229 105616982 Hs.564527 NR_131229 ENSG00000232225 LINC01047 - long intergenic non-protein coding RNA 1047 ncRNA 214.333-40 chr5 154991903 154992496 + 0.666667 NA Intergenic Intergenic -21556 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 228-10 chr14 54692442 54692872 + 0.666667 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) -62176 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 155.333-61 chr22 45873616 45873891 + 0.666667 NA Intergenic L1MEc|LINE|L1 103409 NM_058238 7477 Hs.512714 NM_058238 ENSG00000188064 WNT7B - Wnt family member 7B protein-coding 131.333-101 chr8 118348718 118349106 + 0.666667 NA intron (NM_001363274, intron 4 of 4) intron (NM_001363274, intron 4 of 4) -237093 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 121.333-92 chr6 55405838 55406103 + 0.666667 NA Intergenic Intergenic 78501 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 124.333-51 chr2 200961666 200962052 + 0.666667 NA intron (NR_033915, intron 1 of 16) L4_B_Mam|LINE|RTE-X 1801 NR_033915 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 132.167-50 chr3 183793392 183793753 + 0.666667 NA TTS (NM_001351371) TTS (NM_001351371) 16879 NR_046727 100874113 NR_046727 YEATS2-AS1 - YEATS2 antisense RNA 1 ncRNA 119.167-62 chr3 97080361 97080559 + 0.666667 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 265866 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 113.333-106 chr8 88854253 88854510 + 0.666667 NA Intergenic Intergenic -526898 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 133-54 chr22 26948284 26948580 + 0.666667 NA Intergenic Intergenic 45140 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 189.167-42 chr7 34543918 34544416 + 0.666667 NA intron (NR_033665, intron 2 of 3) L1MA7|LINE|L1 -114051 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 259.833-7 chr4 69565772 69566388 + 0.666667 NA Intergenic Intergenic -40066 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 136.667-29 chr16 24747587 24747914 + 0.666667 NA intron (NM_014494, intron 2 of 24) L3|LINE|CR1 18099 NM_014494 27327 Hs.655057 NM_014494 ENSG00000090905 TNRC6A CAGH26|FAME6|GW1|GW182|TNRC6 trinucleotide repeat containing adaptor 6A protein-coding 183.667-33 chr18 13677403 13677955 + 0.666667 NA intron (NM_152352, intron 2 of 3) LTR2|LTR|ERV1 35921 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 172.333-59 chr4 120568582 120568936 + 0.666667 NA Intergenic Intergenic 354107 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 125.167-59 chr4 117797278 117797605 + 0.666667 NA Intergenic MER39B|LTR|ERV1 -36960 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 246.167-29 chr7 54424704 54425505 + 0.666667 NA Intergenic Intergenic 94407 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 204.667-28 chr2 155615366 155615840 + 0.666667 NA Intergenic Intergenic 639328 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 143.333-49 chr20 53978367 53978736 + 0.666667 NA intron (NM_003657, intron 7 of 11) intron (NM_003657, intron 7 of 11) 80469 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 171.5-40 chr2 222055696 222055979 + 0.666667 NA Intergenic Intergenic -242310 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 187.167-4 chr1 238697478 238698252 + 0.666667 NA Intergenic MER44B|DNA|TcMar-Tigger -211848 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 156.833-21 chr15 70178191 70178574 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -80465 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 114.667-125 chr8 106501663 106502032 + 0.666667 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 53923 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 176.5-64 chr8 86641155 86641854 + 0.666667 NA intron (NM_019098, intron 10 of 17) L1MEd|LINE|L1 102171 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 161.167-41 chr4 178304012 178304531 + 0.666667 NA Intergenic L1MDa|LINE|L1 -396335 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 203-16 chr18 6452842 6453288 + 0.666667 NA Intergenic Intergenic -37806 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 142.167-81 chr8 117389567 117389863 + 0.666667 NA Intergenic L1MC4|LINE|L1 -130998 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 318.834-4 chr15 62732967 62733866 + 0.666667 NA intron (NM_015059, intron 25 of 55) intron (NM_015059, intron 25 of 55) 86105 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 158.333-79 chr9 114193834 114194175 + 0.666667 NA intron (NM_032888, intron 5 of 60) L2b|LINE|L2 -15430 NR_030255 619556 NR_030255 ENSG00000207726 MIR455 MIRN455|hsa-mir-455|mir-455 microRNA 455 ncRNA 133.667-18 chr11 38391692 38392019 + 0.666667 NA Intergenic Intergenic 254501 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 199-12 chr2 28175275 28175828 + 0.666667 NA intron (NR_120504, intron 1 of 2) L1MA4A|LINE|L1 31410 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 169.333-70 chr8 93954160 93954467 + 0.666667 NA Intergenic AluSx1|SINE|Alu 37366 NM_001161779 54704 Hs.22265 NM_018444 ENSG00000164951 PDP1 PDH|PDP|PDPC|PPM2A|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 148.833-27 chr18 31270077 31270366 + 0.666667 NA Intergenic Intergenic -47939 NM_001942 1828 Hs.2633 NM_001942 ENSG00000134760 DSG1 CDHF4|DG1|DSG|EPKHE|EPKHIA|PPKS1|SPPK1 desmoglein 1 protein-coding 175.167-16 chr12 2659199 2659714 + 0.666667 NA intron (NM_199460, intron 36 of 49).2 Tigger3b|DNA|TcMar-Tigger 12764 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 139.167-4 chr1 114548442 114548957 + 0.666667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 32916 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 146.667-28 chr13 93790703 93791005 + 0.666667 NA intron (NM_005708, intron 2 of 8) L2c|LINE|L2 67619 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 225.833-11 chr3 77525806 77526291 + 0.666667 NA intron (NM_001290065, intron 6 of 26) intron (NM_001290065, intron 6 of 26) 428036 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 130-106 chr9 94897485 94897778 + 0.666667 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 47923 NR_147614 101928119 Hs.630906 NR_147613 LOC101928119 - uncharacterized LOC101928119 ncRNA 126-16 chr11 8130391 8130581 + 0.666667 NA intron (NM_001346690, intron 4 of 6) MLT1K|LTR|ERVL-MaLR 38539 NM_001346691 79608 Hs.231850 NM_024557 ENSG00000166405 RIC3 AYST720|PRO1385 RIC3 acetylcholine receptor chaperone protein-coding 125-10 chr10 27549378 27549642 + 0.666667 NA Intergenic L2a|LINE|L2 45206 NR_046172 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 127.667-105 chrX 70688097 70688445 + 0.666667 NA intron (NM_001003811, intron 14 of 30) L1MC3|LINE|L1 158024 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 175.333-68 chr9 124621009 124621455 + 0.666667 NA intron (NM_033334, intron 2 of 9) intron (NM_033334, intron 2 of 9) -37204 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 143.167-82 chr9 86779209 86779719 + 0.666667 NA Intergenic Intergenic 168042 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 131.667-24 chr11 114582924 114583134 + 0.666667 NA intron (NM_017678, intron 2 of 5) intron (NM_017678, intron 2 of 5) 12757 NM_001077639 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 186-25 chr2 199777977 199778436 + 0.666667 NA intron (NM_001350855, intron 3 of 3) intron (NM_001350855, intron 3 of 3) 72967 NM_001350854 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 164.333-51 chr4 90148817 90149222 + 0.666667 NA intron (NM_001145065, intron 1 of 10) intron (NM_001145065, intron 1 of 10) 21486 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 198.333-4 chr11 37072312 37072817 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -474285 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 148.833-41 chr3 19250521 19250757 + 0.666667 NA intron (NM_144633, intron 1 of 15) intron (NM_144633, intron 1 of 15) 64292 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 118.333-96 chr5 142644812 142645010 + 0.666667 NA promoter-TSS (NM_001257210) promoter-TSS (NM_001257210) -610 NM_001257210 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 170.333-41 chr2 224758905 224759482 + 0.666667 NA Intergenic Intergenic -173796 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 122.333-83 chr4 68109259 68109512 + 0.666667 NA intron (NM_207407, intron 1 of 9) intron (NM_207407, intron 1 of 9) 20484 NM_207407 389208 Hs.677557 NM_207407 ENSG00000198092 TMPRSS11F - transmembrane serine protease 11F protein-coding 180.333-46 chr4 78862175 78862493 + 0.666667 NA intron (NM_017593, intron 9 of 13) L2c|LINE|L2 77104 NR_146463 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 161.333-29 chr15 65856957 65857354 + 0.666667 NA Intergenic Intergenic -12336 NM_001206836 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 152-49 chr8 82696668 82696996 + 0.666667 NA Intergenic L2c|LINE|L2 -215272 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 132.5-99 chr8 122431141 122431736 + 0.666667 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 137206 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 130.667-59 chr3 194906349 194906683 + 0.666667 NA Intergenic MER99|DNA|hAT? -137807 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 192-17 chr17 61582095 61582394 + 0.666667 NA Intergenic Intergenic 8975 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 182.333-49 chr4 121501592 121502129 + 0.666667 NA Intergenic L1MD3|LINE|L1 -120842 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 126.667-80 chr6 10238396 10238723 + 0.666667 NA Intergenic Intergenic -165943 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 153.333-57 chr3 182476342 182476666 + 0.666667 NA intron (NR_040105, intron 1 of 3) MIRb|SINE|MIR 9858 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 188.5-26 chr2 32722064 32722457 + 0.666667 NA intron (NM_017735, intron 10 of 19) intron (NM_017735, intron 10 of 19) 87005 NR_039922 100616219 NR_039922 ENSG00000265057 MIR4765 - microRNA 4765 ncRNA 209-36 chr4 65149412 65149825 + 0.666667 NA Intergenic MLT2A2|LTR|ERVL -145118 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 156.333-63 chr3 108014570 108014891 + 0.666667 NA Intergenic Intergenic 76358 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 194.333-32 chr5 155531803 155532161 + 0.666667 NA Intergenic MIR|SINE|MIR 518227 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 128.167-20 chr13 111511484 111511802 + 0.666667 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -84366 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 177.167-37 chr5 102242813 102243399 + 0.666667 NA intron (NM_180991, intron 10 of 12) L1M1|LINE|L1 53178 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 156.667-26 chr12 32648337 32648694 + 0.666667 NA Intergenic L2|LINE|L2 -30685 NM_001278466 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 125.667-59 chr2 71638250 71638630 + 0.666667 NA intron (NM_001130987, intron 41 of 55) MIR|SINE|MIR 171741 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 126.667-68 chr4 105953458 105953802 + 0.666667 NA intron (NM_001184692, intron 8 of 10) intron (NM_001184692, intron 8 of 10) 58159 NM_001184691 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 154.667-73 chr9 73494938 73495205 + 0.666667 NA Intergenic Intergenic 343206 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 121.833-23 chr17 64228143 64228444 + 0.666667 NA intron (NM_018469, intron 1 of 11) MER1A|DNA|hAT-Charlie 2441 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 149.667-36 chr2 47148935 47149484 + 0.666667 NA intron (NM_001163561, intron 3 of 6) intron (NM_001163561, intron 3 of 6) 6099 NM_173649 285051 Hs.531575 NM_173649 ENSG00000239605 STPG4 C2orf61|GSE sperm-tail PG-rich repeat containing 4 protein-coding 176.333-63 chr9 11555367 11555847 + 0.666667 NA Intergenic L1M3d|LINE|L1 942401 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 125.333-46 chr14 76574983 76575278 + 0.666667 NA Intergenic Intergenic -186338 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 124.833-79 chr6 40900906 40901304 + 0.666667 NA intron (NR_110873, intron 2 of 5) MamTip2|DNA|hAT-Tip100 122175 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 198.5-33 chr5 92018710 92019199 + 0.666667 NA Intergenic Intergenic -635637 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 151.667-49 chr2 187838247 187838610 + 0.666667 NA Intergenic Alu|SINE|Alu -283923 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 140.833-3 chr10 9100977 9101258 + 0.666667 NA Intergenic AluSx|SINE|Alu -174496 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 162-49 chr4 61225450 61225707 + 0.666667 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 23406 NM_001371342 171-17 chr16 77264777 77265223 + 0.666667 NA Intergenic L1PA10|LINE|L1 65592 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 150.333-19 chr11 26555441 26555823 + 0.666667 NA intron (NM_031418, intron 13 of 26) intron (NM_031418, intron 13 of 26) 16631 NM_145650 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 116.333 chr1 44373366 44373626 + 0.666667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -18217 NM_001301700 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 190.5-30 chr2 63635474 63635864 + 0.666667 NA Intergenic L1MA9|LINE|L1 46518 NM_001199111 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 290-4 chr2 100848600 100849046 + 0.666667 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 28684 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 195-8 chr11 108725443 108725825 + 0.666667 NA intron (NM_004398, intron 13 of 17) L1ME1|LINE|L1 60565 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 187-22 chr20 47506765 47507258 + 0.666667 NA intron (NM_181659, intron 1 of 22) intron (NM_181659, intron 1 of 22) 5124 NM_181659 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 198.833-13 chr2 116668881 116669384 + 0.666667 NA Intergenic L1PREC2|LINE|L1 -1145559 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 208-37 chr7 87756005 87756541 + 0.666667 NA intron (NM_138290, intron 7 of 11) intron (NM_138290, intron 7 of 11) -42950 NM_000927 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 125.833-66 chr4 116639059 116639309 + 0.666667 NA Intergenic Intergenic 339459 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 151.333-24 chr12 131365624 131366009 + 0.666667 NA intron (NR_103736, intron 2 of 3) intron (NR_103736, intron 2 of 3) 18346 NR_103736 338797 Hs.592007 NM_001025466 LINC02370 - long intergenic non-protein coding RNA 2370 ncRNA 157.5-73 chr9 134482122 134482805 + 0.666667 NA Intergenic Intergenic 75903 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 179.5-31 chr7 35771458 35771892 + 0.666667 NA intron (NR_120511, intron 3 of 5) MIR|SINE|MIR 28950 NR_120511 101928545 Hs.648103 NR_120511 SEPTIN7-AS1 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) ncRNA 246.5-4 chr1 154176419 154177066 + 0.666667 NA intron (NM_152263, intron 2 of 9) AluSx4|SINE|Alu 1462 NM_001278191 7170 Hs.535581 NM_152263 ENSG00000143549 TPM3 CAPM1|CFTD|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30 tropomyosin 3 protein-coding 165.5-21 chr14 45952158 45952409 + 0.666667 NA Intergenic Intergenic -111876 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 131.5-13 chr11 39080829 39081287 + 0.666667 NA Intergenic L1MA6|LINE|L1 432200 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 122.167-57 chr5 95600503 95600845 + 0.666667 NA intron (NM_198150, intron 6 of 7) MIR|SINE|MIR -19413 NM_199243 285601 Hs.143315 NM_199243 ENSG00000178015 GPR150 PGR11 G protein-coupled receptor 150 protein-coding 131.167-3 chr1 49768476 49768713 + 0.666667 NA intron (NM_001323575, intron 2 of 12) L1PA15-16|LINE|L1 255360 NM_001323573 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 166.333-61 chr5 25697227 25697703 + 0.666667 NA Intergenic Intergenic 506512 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 132.667-52 chr2 124641190 124641586 + 0.666667 NA intron (NM_130773, intron 12 of 23) MIRb|SINE|MIR 616101 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 162-54 chr4 172795575 172795955 + 0.666667 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) -68887 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 191.667 chr1 111454747 111455212 + 0.666667 NA intron (NM_001688, intron 3 of 6) L2a|LINE|L2 5515 NM_001688 515 Hs.514870 NM_001688 ENSG00000116459 ATP5PB ATP5F1|PIG47 ATP synthase peripheral stalk-membrane subunit b protein-coding 138.333-22 chr11 115779127 115779399 + 0.666667 NA Intergenic Intergenic -19063 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 125.667-9 chr1 197692797 197693007 + 0.666667 NA intron (NR_125340, intron 3 of 19) intron (NR_125340, intron 3 of 19) 82578 NM_001300858 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 235.833-15 chr5 4483507 4484025 + 0.666667 NA Intergenic L1MEc|LINE|L1 -289715 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 127.333-107 chr7 87085941 87086252 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR -26442 NM_001142749 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 137.667-33 chr15 63294729 63294994 + 0.666667 NA intron (NM_031301, intron 4 of 5) L1MEf|LINE|L1 17256 NM_031301 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 199.5-32 chr5 26168560 26168969 + 0.666667 NA Intergenic Intergenic 869822 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 119.5-50 chr2 143040895 143041118 + 0.666667 NA intron (NM_001199241, intron 14 of 14) intron (NM_001199241, intron 14 of 14) -88413 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 179-39 chr4 97245804 97246256 + 0.666667 NA Intergenic L1PA16|LINE|L1 -120896 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 117.333-92 chr5 169312828 169313078 + 0.666667 NA Intergenic L1ME1|LINE|L1 -11814 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 201.333-2 chr1 65096173 65096595 + 0.666667 NA Intergenic L1M2|LINE|L1 -28638 NM_001321852 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 152.833-6 chr10 15117727 15118094 + 0.666667 NA intron (NM_001308295, intron 10 of 12) L1MDa|LINE|L1 20555 NM_006414 10557 Hs.94986 NM_006414 ENSG00000152464 RPP38 - ribonuclease P/MRP subunit p38 protein-coding 186.333-23 chr14 71569959 71570267 + 0.666667 NA intron (NM_001354289, intron 5 of 23) intron (NM_001354289, intron 5 of 23) -16185 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 142.5-77 chrX 73141119 73141412 + 0.666667 NA Intergenic Intergenic -13185 NR_027291 645996 Hs.617486 NR_027291 ENSG00000204118 NAP1L6 - nucleosome assembly protein 1 like 6 pseudo 135.334-3 chr14 49657874 49658426 + 0.666667 NA intron (NM_001348385, intron 10 of 18) AluYm1|SINE|Alu -22920 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 145.833-68 chr5 119162887 119163212 + 0.666667 NA intron (NM_001290321, intron 19 of 43) intron (NM_001290321, intron 19 of 43) 8412 NR_049892 100847085 NR_049892 ENSG00000264536 MIR5706 - microRNA 5706 ncRNA 128.5-85 chr9 27624316 27624700 + 0.666667 NA Intergenic Zaphod|DNA|hAT-Tip100 -50642 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 192.167-38 chr6 51303481 51303897 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -318181 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 175.667-34 chr2 218838281 218838588 + 0.666667 NA Intergenic L1ME3A|LINE|L1 -6631 NM_017431 53632 Hs.591634 NM_017431 ENSG00000115592 PRKAG3 AMPKG3 protein kinase AMP-activated non-catalytic subunit gamma 3 protein-coding 136.667-55 chr22 35260502 35260793 + 0.666667 NA intron (NM_001362972, intron 1 of 9) intron (NM_001362972, intron 1 of 9) 3154 NM_001362972 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 123-86 chr8 130799229 130799477 + 0.666667 NA intron (NM_001115, intron 15 of 17) L1MA7|LINE|L1 241556 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 212.833-3 chr11 37523739 37524113 + 0.666667 NA Intergenic L1MC3|LINE|L1 -414675 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 161.667-42 chr2 76545213 76545690 + 0.666667 NA Intergenic Intergenic -440514 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 132.5-35 chr15 90604809 90605350 + 0.666667 NA intron (NM_001042574, intron 5 of 14) AluJb|SINE|Alu -55155 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LINC01585 - long intergenic non-protein coding RNA 1585 ncRNA 154.333-76 chr8 87557743 87558108 + 0.666667 NA Intergenic Intergenic 316090 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 266.333-20 chr8 138551053 138551618 + 0.666667 NA Intergenic THE1D-int|LTR|ERVL-MaLR -53605 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 165.5-12 chr12 31884172 31884572 + 0.666667 NA intron (NR_135029, intron 1 of 1) AluY|SINE|Alu 2831 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 133-26 chr13 83245338 83245674 + 0.666667 NA Intergenic Intergenic 636887 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 222.167-17 chr16 78620481 78621033 + 0.666667 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 521103 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 204-10 chr15 85457737 85458121 + 0.666667 NA intron (NM_007200, intron 1 of 36) AluSc|SINE|Alu 77326 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 146.667-14 chr10 99608955 99609300 + 0.666667 NA Intergenic L2c|LINE|L2 11312 NM_031212 81894 Hs.403790 NM_031212 ENSG00000155287 SLC25A28 MFRN2|MRS3/4|MRS4L|NPD016 solute carrier family 25 member 28 protein-coding 278.167 chr1 83073697 83074223 + 0.666667 NA intron (NR_147074, intron 5 of 10) intron (NR_147074, intron 5 of 10) -87752 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 146.667-70 chr5 95337043 95337370 + 0.666667 NA Intergenic AluSx|SINE|Alu -52631 NM_024717 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 139.333-34 chr14 45619530 45619894 + 0.666667 NA Intergenic L1PA16|LINE|L1 95890 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 138.333-87 chr5 37604285 37604629 + 0.666667 NA intron (NM_001345998, intron 9 of 17) intron (NM_001345998, intron 9 of 17) 225139 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 185.667-8 chr10 112303964 112304290 + 0.666667 NA 3' UTR (NM_058222, exon 11 of 11) 3' UTR (NM_058222, exon 11 of 11) -4439 NR_106772 102465427 NR_106772 ENSG00000283688 MIR6715B hsa-mir-6715b microRNA 6715b ncRNA 121.333-5 chr1 71778130 71778455 + 0.666667 NA intron (NM_173808, intron 2 of 6) MER47A|DNA|TcMar-Tigger 58720 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 191.667-28 chr20 59892501 59892896 + 0.666667 NA exon (NM_014258, exon 23 of 45) exon (NM_014258, exon 23 of 45) 40939 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 138.667-83 chr6 54377704 54378036 + 0.666667 NA intron (NM_014464, intron 9 of 10) intron (NM_014464, intron 9 of 10) 69429 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 209-44 chr9 80007176 80007568 + 0.666667 NA intron (NR_121212, intron 3 of 4) intron (NR_121212, intron 3 of 4) 32349 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 142 chr1 20013252 20013822 + 0.666667 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -33103 NM_001161728 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 219.333-31 chr4 86618896 86619409 + 0.666667 NA intron (NM_080685, intron 1 of 47) Tigger5b|DNA|TcMar-Tigger 24837 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 285.833-4 chr20 44889162 44889893 + 0.666667 NA intron (NM_003404, intron 2 of 6) intron (NM_003404, intron 2 of 6) 3822 NM_003404 7529 Hs.643544 NM_003404 ENSG00000166913 YWHAB GW128|HEL-S-1|HS1|KCIP-1|YWHAA tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta protein-coding 247.333-24 chr7 71348746 71349185 + 0.666667 NA intron (NM_022479, intron 2 of 10) intron (NM_022479, intron 2 of 10) -41195 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 122.333-42 chr16 10362871 10363346 + 0.666667 NA Intergenic Intergenic -22953 NM_024997 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 211-16 chr14 28454310 28454724 + 0.666667 NA Intergenic L1MA9|LINE|L1 310802 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 119.833-38 chr2 31529245 31529441 + 0.666667 NA exon (NM_000348, exon 4 of 5) exon (NM_000348, exon 4 of 5) 51595 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 168.5-21 chr16 60186573 60187109 + 0.666667 NA Intergenic MER66B|LTR|ERV1 172952 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 137.333-53 chr2 161563367 161563685 + 0.666667 NA Intergenic L1PB4|LINE|L1 -55624 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 113.333-12 chr1 211977967 211978198 + 0.666667 NA intron (NM_015434, intron 11 of 19) intron (NM_015434, intron 11 of 19) -57471 NM_001286230 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 181.333-15 chr14 69205085 69205587 + 0.666667 NA intron (NM_001193360, intron 2 of 9) AluJo|SINE|Alu 13570 NM_001193362 55218 Hs.533878 NM_018199 ENSG00000081177 EXD2 C14orf114|EXDL2 exonuclease 3'-5' domain containing 2 protein-coding 149.667-25 chr15 52432800 52433281 + 0.666667 NA intron (NM_001142495, intron 2 of 39) intron (NM_001142495, intron 2 of 39) 95840 NM_001142495 4644 Hs.21213 NM_000259 ENSG00000197535 MYO5A GS1|MYH12|MYO5|MYR12 myosin VA protein-coding 118.5-68 chr3 96807392 96807697 + 0.666667 NA Intergenic Intergenic -7050 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 139.667-62 chr3 64092454 64092689 + 0.666667 NA 3' UTR (NM_198859, exon 8 of 8) 3' UTR (NM_198859, exon 8 of 8) -5208 NR_033978 100287879 Hs.452789 NR_033978 ENSG00000189196 LINC00994 - long intergenic non-protein coding RNA 994 ncRNA 135.167-66 chr3 124528848 124529332 + 0.666667 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -55568 NM_007064 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 183.5-51 chr5 79996385 79996905 + 0.666667 NA intron (NM_001306213, intron 1 of 22) intron (NM_001306213, intron 1 of 22) 5349 NM_001306213 7060 Hs.211426 NM_003248 ENSG00000113296 THBS4 TSP-4|TSP4 thrombospondin 4 protein-coding 172.167-13 chr13 42748342 42748891 + 0.666667 NA Intergenic Intergenic -32934 NM_182508 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 202.667-19 chr18 69059990 69060483 + 0.666667 NA Intergenic L1PA16|LINE|L1 262156 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 251.333-7 chr12 54248342 54248884 + 0.666667 NA intron (NM_012117, intron 3 of 4) intron (NM_012117, intron 3 of 4) 10932 NM_001127322 23468 Hs.349283 NM_012117 ENSG00000094916 CBX5 HEL25|HP1|HP1A chromobox 5 protein-coding 214.333-46 chr8 133513653 133514233 + 0.666667 NA intron (NM_003033, intron 2 of 8) intron (NM_003033, intron 2 of 8) 57944 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 172.167-2 chr1 45802087 45802687 + 0.666667 NA Intergenic L2|LINE|L2 -1220 NM_001324320 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 145.333-104 chrX 95715884 95716102 + 0.666667 NA Intergenic Intergenic 621909 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 182.667-19 chr14 64119086 64119467 + 0.666667 NA intron (NM_015180, intron 66 of 114) intron (NM_015180, intron 66 of 114) -24151 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 189.333-58 chrX 97529474 97529868 + 0.666667 NA intron (NR_125391, intron 2 of 2) L2c|LINE|L2 34864 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 163.5-69 chr7 80922657 80923031 + 0.666667 NA promoter-TSS (NM_001350120) promoter-TSS (NM_001350120) -455 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 130.833-20 chr15 68640905 68641192 + 0.666667 NA promoter-TSS (NM_001324015) promoter-TSS (NM_001324015) -455 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 171-8 chr11 77420882 77421391 + 0.666667 NA intron (NM_001128620, intron 1 of 15) L2a|LINE|L2 52927 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 171-50 chr5 159682842 159683244 + 0.666667 NA Intergenic L1MA1|LINE|L1 188341 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 168.333-9 chr12 13944652 13945104 + 0.666667 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 35478 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 139.333-36 chr14 82519182 82519565 + 0.666667 NA Intergenic Intergenic -123259 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 162.333-61 chr5 146948831 146949165 + 0.666667 NA intron (NM_001271900, intron 2 of 10) MER5A|DNA|hAT-Charlie -29492 NR_047115 100874361 Hs.193825 NR_047115 ENSG00000249553 PPP2R2B-IT1 - PPP2R2B intronic transcript 1 ncRNA 143.5-45 chr20 52278825 52279337 + 0.666667 NA Intergenic Intergenic -87096 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 170.667-25 chr16 73200712 73201044 + 0.666667 NA Intergenic Intergenic -56431 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 293.5-6 chr14 67112358 67113076 + 0.666667 NA intron (NM_001024218, intron 14 of 21) intron (NM_001024218, intron 14 of 21) -76723 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 235.333-24 chr7 35778156 35778960 + 0.666667 NA intron (NR_120511, intron 3 of 5) intron (NR_120511, intron 3 of 5) 22067 NR_120511 101928545 Hs.648103 NR_120511 SEPTIN7-AS1 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) ncRNA 125.167 chr1 12579357 12579599 + 0.666667 NA promoter-TSS (NR_106788) promoter-TSS (NR_106788) -455 NR_106788 102466722 NR_106788 ENSG00000276830 MIR6730 hsa-mir-6730 microRNA 6730 ncRNA 161.333-19 chr13 83849166 83849571 + 0.666667 NA Intergenic Intergenic 33025 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 137.333-80 chr5 114355614 114355862 + 0.666667 NA Intergenic Intergenic -6332 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 120.5-61 chr3 132235536 132235835 + 0.666667 NA Intergenic L1MA9|LINE|L1 -81722 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 146.167-75 chr8 125589711 125590215 + 0.666667 NA Intergenic Intergenic 157754 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 189.667-50 chr8 129313067 129313769 + 0.666667 NA Intergenic MER20|DNA|hAT-Charlie -72178 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 163-49 chr5 102304192 102304583 + 0.666667 NA Intergenic L3b|LINE|CR1 -8103 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 170.167-36 chr21 33825137 33825644 + 0.666667 NA intron (NM_001001132, intron 25 of 29) intron (NM_001001132, intron 25 of 29) 90414 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5PO ATP5O|ATPO|HMC08D05|OSCP ATP synthase peripheral stalk subunit OSCP protein-coding 176-29 chr4 44539433 44539823 + 0.666667 NA Intergenic MIR|SINE|MIR -90819 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 149.667-61 chr4 183254280 183254570 + 0.666667 NA intron (NM_024949, intron 9 of 22) intron (NM_024949, intron 9 of 22) -13791 NR_126473 101928734 Hs.570713 NR_126473 ENSG00000251128 WWC2-AS1 - WWC2 antisense RNA 1 ncRNA 200.833-5 chr10 106363582 106363960 + 0.666667 NA Intergenic L3|LINE|CR1 223606 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 118-108 chr6 145004229 145004425 + 0.666667 NA Intergenic L2|LINE|L2 598672 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 171.333-27 chr18 3265379 3265757 + 0.666667 NA intron (NM_001144945, intron 1 of 3) intron (NM_001144945, intron 1 of 3) 2849 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 217.5-27 chr2 170083475 170084080 + 0.666667 NA 3' UTR (NM_172070, exon 39 of 39) 3' UTR (NM_172070, exon 39 of 39) -94370 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 189.167-6 chr1 185114751 185115131 + 0.666667 NA Intergenic Intergenic 42012 NM_030934 81627 Hs.107149 NM_030934 ENSG00000121486 TRMT1L C1orf25|MST070|MSTP070|TRM1L|bG120K12.3 tRNA methyltransferase 1 like protein-coding 157-65 chr5 22957114 22957420 + 0.666667 NA Intergenic Intergenic -103923 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 132.667-46 chr2 20786546 20786912 + 0.666667 NA intron (NM_001282722, intron 1 of 4) L1MCa|LINE|L1 36372 NM_021925 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 199.667-10 chr11 31821953 31822413 + 0.666667 NA intron (NR_033971, intron 1 of 2) intron (NR_033971, intron 1 of 2) -4222 NM_001258462 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 150.667-35 chr14 78659497 78659838 + 0.666667 NA intron (NR_073547, intron 6 of 20) AluJr|SINE|Alu 255948 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 207.5-9 chr13 63003232 63003750 + 0.666667 NA Intergenic L1PB1|LINE|L1 -196132 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 140.333-39 chr20 9893721 9894148 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -54858 NM_177990 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 118.5-82 chr5 55049246 55049423 + 0.666667 NA Intergenic Intergenic 25078 NM_002104 3003 Hs.277937 NM_002104 ENSG00000113088 GZMK TRYP2 granzyme K protein-coding 129.5-71 chr5 39899712 39900082 + 0.666667 NA Intergenic Intergenic -152394 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 117.5-34 chr20 53535839 53536142 + 0.666667 NA Intergenic MER58A|DNA|hAT-Charlie -16780 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 123-80 chr7 2652633 2653065 + 0.666667 NA intron (NM_025250, intron 8 of 13) intron (NM_025250, intron 8 of 13) 20863 NM_025250 80727 Hs.440899 NM_025250 ENSG00000136295 TTYH3 - tweety family member 3 protein-coding 129.5-14 chr11 39670936 39671259 + 0.666667 NA Intergenic Intergenic 622033 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 145.667 chr1 5728531 5728793 + 0.666667 NA Intergenic Intergenic 134079 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 118.5-91 chr8 27082320 27082498 + 0.666667 NA Intergenic Intergenic -33446 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 178.5-39 chr18 53679333 53679666 + 0.666667 NA Intergenic Intergenic -98440 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 187-29 chr3 193030302 193030870 + 0.666667 NA Intergenic Intergenic -112730 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 161.667-7 chr1 157482406 157482668 + 0.666667 NA Intergenic Intergenic 69978 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 161.833-38 chr6 50234908 50235298 + 0.666667 NA Intergenic Intergenic -185174 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 157.667-71 chr8 62079989 62080466 + 0.666667 NA Intergenic L1MB1|LINE|L1 -168627 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 151.667-48 chr2 185611339 185611834 + 0.666667 NA Intergenic MIRc|SINE|MIR 127133 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 130-11 chr10 19405185 19405652 + 0.666667 NA intron (NM_001142308, intron 28 of 39) intron (NM_001142308, intron 28 of 39) 323132 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 191.5-13 chr12 44087552 44088072 + 0.666667 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 251731 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 125.333-90 chr5 6667649 6668106 + 0.666667 NA intron (NM_001047, intron 4 of 4) intron (NM_001047, intron 4 of 4) 34437 NM_001047 6715 Hs.552 NM_001047 ENSG00000145545 SRD5A1 S5AR 1 steroid 5 alpha-reductase 1 protein-coding 115.667-111 chr7 28451525 28451848 + 0.666667 NA intron (NM_004904, intron 1 of 10) intron (NM_004904, intron 1 of 10) 16071 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 156-36 chr17 3727724 3728106 + 0.666667 NA intron (NM_002208, intron 26 of 30) intron (NM_002208, intron 26 of 30) 4012 NM_031965 83903 Hs.534059 NM_031965 ENSG00000177602 HASPIN GSG2 histone H3 associated protein kinase protein-coding 151.333-80 chr7 86652913 86653298 + 0.666667 NA intron (NM_001363522, intron 1 of 4) MLT1A|LTR|ERVL-MaLR 9191 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 144.667-45 chr15 70877316 70877739 + 0.666667 NA intron (NM_001284357, intron 2 of 16) L1ME1|LINE|L1 14906 NM_020147 56906 Hs.591123 NM_020147 ENSG00000129028 THAP10 - THAP domain containing 10 protein-coding 142.667-24 chr12 68323633 68323951 + 0.666667 NA 3' UTR (NM_020128, exon 3 of 3) 3' UTR (NM_020128, exon 3 of 3) 8570 NM_020128 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 162.5-69 chr7 28831018 28831347 + 0.666667 NA Intergenic Intergenic 127148 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 214.833-22 chr6 136348737 136349173 + 0.666667 NA intron (NM_001198611, intron 15 of 16) intron (NM_001198611, intron 15 of 16) -59104 NM_001077440 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 174-23 chr14 70772513 70772997 + 0.666667 NA intron (NM_001284231, intron 1 of 11) MIR|SINE|MIR 10697 NM_001284231 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 238-5 chr10 32752697 32753149 + 0.666667 NA intron (NM_001321115, intron 29 of 43) intron (NM_001321115, intron 29 of 43) 148549 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 128.667-84 chr4 67187749 67188099 + 0.666667 NA Intergenic Intergenic 234076 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 129-92 chr7 11436107 11436577 + 0.666667 NA intron (NM_015204, intron 13 of 26) intron (NM_015204, intron 13 of 26) 395856 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 143.167-40 chr2 174446529 174446823 + 0.666667 NA exon (NM_152529, exon 12 of 16) exon (NM_152529, exon 12 of 16) 40353 NM_001033045 151556 Hs.516604 NM_152529 ENSG00000163328 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 153.333-15 chr12 101652047 101652360 + 0.666667 NA intron (NM_206821, intron 14 of 28) Charlie4z|DNA|hAT-Charlie -45437 NM_020244 56994 Hs.293077 NM_020244 ENSG00000111666 CHPT1 CPT|CPT1 choline phosphotransferase 1 protein-coding 164.833-26 chr20 54255697 54256042 + 0.666667 NA Intergenic MIR|SINE|MIR 47782 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 144.167-48 chr3 80790940 80791329 + 0.666667 NA Intergenic L1PA4|LINE|L1 20430 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 209.333-2 chr1 86280063 86280530 + 0.666667 NA Intergenic Intergenic 77391 NR_107010 102465842 NR_107010 ENSG00000278281 MIR7856 hsa-mir-7856 microRNA 7856 ncRNA 152.167-38 chr21 23226075 23226426 + 0.666667 NA Intergenic MLT1G3|LTR|ERVL-MaLR 146966 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 121.333-28 chr14 58895095 58895401 + 0.666667 NA intron (NR_110547, intron 2 of 5) intron (NR_110547, intron 2 of 5) 66960 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 182.667-14 chr12 4913594 4914031 + 0.666667 NA 3' UTR (NM_000217, exon 2 of 2) 3' UTR (NM_000217, exon 2 of 2) 3907 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 158.833-13 chr11 111485882 111486168 + 0.666667 NA intron (NM_017589, intron 5 of 5) L1MA2|LINE|L1 -24577 NR_147706 728196 Hs.363156 NR_147706 ENSG00000286028 LOC728196 - uncharacterized LOC728196 ncRNA 157.333-13 chr12 26798597 26798947 + 0.666667 NA intron (NM_002223, intron 1 of 56) intron (NM_002223, intron 1 of 56) 34422 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 147.333-54 chr3 43498904 43499235 + 0.666667 NA intron (NM_001346464, intron 12 of 13) intron (NM_001346464, intron 12 of 13) 122857 NM_001346466 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 126.667-102 chr8 108811034 108811318 + 0.666667 NA Intergenic LTR49-int|LTR|ERV1 -23582 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 123.167-26 chr14 63465993 63466274 + 0.666667 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 42105 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 155.667-42 chr2 84353440 84353825 + 0.666667 NA Intergenic Intergenic 62950 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 123.167-96 chr8 118119862 118120198 + 0.666667 NA Intergenic L2a|LINE|L2 -8211 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 161.167-58 chr8 116269666 116270071 + 0.666667 NA intron (NR_046215, intron 2 of 13) L1PA15|LINE|L1 55191 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 167.167-20 chr11 113817534 113817839 + 0.666667 NA exon (NM_001346261, exon 11 of 23) exon (NM_001346261, exon 11 of 23) 37890 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 158.333-56 chr4 147521749 147522110 + 0.666667 NA intron (NR_045958, intron 3 of 6) AluJo|SINE|Alu 40832 NM_001957 1909 Hs.183713 NM_001957 ENSG00000151617 EDNRA ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR endothelin receptor type A protein-coding 213.5-6 chr17 30377915 30378319 + 0.666667 NA promoter-TSS (NM_001304) promoter-TSS (NM_001304) -810 NM_001304 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 203.334-5 chr5 28278116 28278809 + 0.666667 NA Intergenic AluSc|SINE|Alu 9203 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 195.333-27 chr2 220887224 220887784 + 0.666667 NA Intergenic Intergenic 684800 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 153.833-31 chr2 30013869 30014229 + 0.666667 NA Intergenic L1ME3Cz|LINE|L1 -92463 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 195-45 chr8 77517522 77518037 + 0.666667 NA Intergenic Intergenic 67082 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 173-19 chr14 68646873 68647412 + 0.666667 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) -18355 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 128.167-84 chr8 86404803 86405169 + 0.666667 NA intron (NM_007013, intron 8 of 24) intron (NM_007013, intron 8 of 24) 62439 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 132.333-79 chr4 154404502 154404785 + 0.666667 NA intron (NM_001358235, intron 1 of 19) L1ME2|LINE|L1 87156 NM_001358235 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 169.833-8 chr10 131851281 131851675 + 0.666667 NA Intergenic HAL1|LINE|L1 -49530 NM_018461 55844 Hs.380372 NM_018461 ENSG00000175470 PPP2R2D B55D|B55delta|MDS026 protein phosphatase 2 regulatory subunit Bdelta protein-coding 147.5-83 chr8 108538278 108538616 + 0.666667 NA Intergenic MIR3|SINE|MIR 94823 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 276-3 chr1 118276146 118276917 + 0.666667 NA Intergenic MER47A|DNA|TcMar-Tigger -91303 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 147.667-60 chr6 42448123 42448350 + 0.666667 NA intron (NM_001297573, intron 2 of 17) intron (NM_001297573, intron 2 of 17) 3815 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 136.167-48 chr22 26993313 26993545 + 0.666667 NA Intergenic Intergenic 67089 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 130.667-96 chr8 117691724 117692099 + 0.666667 NA Intergenic Intergenic 171198 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 195 chr1 8916142 8916544 + 0.666667 NA Intergenic L1MB5|LINE|L1 -29525 NM_001270501 765 Hs.100322 NM_001215 ENSG00000131686 CA6 CA-VI|GUSTIN carbonic anhydrase 6 protein-coding 163.333-39 chr2 50325354 50325804 + 0.666667 NA intron (NM_001330093, intron 17 of 22) MIRc|SINE|MIR 22175 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 137.167-68 chr8 29803226 29803517 + 0.666667 NA Intergenic HAL1|LINE|L1 25133 NR_125817 101929470 Hs.204721 NR_125817 ENSG00000248964 LOC101929470 - uncharacterized LOC101929470 ncRNA 125.667-51 chr2 13843428 13843956 + 0.666667 NA Intergenic L1PB1|LINE|L1 557266 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 118-58 chr2 144915953 144916292 + 0.666667 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 248155 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 196-14 chr11 73138954 73139446 + 0.666667 NA intron (NM_014824, intron 2 of 19) intron (NM_014824, intron 2 of 19) 3118 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 149.667-83 chr9 130825777 130826078 + 0.666667 NA intron (NM_007313, intron 1 of 10) intron (NM_007313, intron 1 of 10) -9327 NM_005157 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 148.833-30 chr2 32198467 32198722 + 0.666667 NA intron (NM_001330476, intron 7 of 10) AluSq2|SINE|Alu 32730 NM_001330477 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 133-32 chr14 66628885 66629144 + 0.666667 NA intron (NM_001024218, intron 1 of 21) AluJo|SINE|Alu 121607 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 116.667-11 chr10 24961569 24961838 + 0.666667 NA Intergenic Intergenic -9097 NM_001282786 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 133.333-83 chr3 135939271 135939494 + 0.666667 NA Intergenic AluSp|SINE|Alu -26346 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 146.5-82 chr7 89854855 89855325 + 0.666667 NA Intergenic L1MEd|LINE|L1 -264310 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 165.833-24 chr16 3666752 3667161 + 0.666667 NA intron (NM_001272049, intron 10 of 16) intron (NM_001272049, intron 10 of 16) 12252 NM_001351825 1773 Hs.629638 NM_005223 ENSG00000213918 DNASE1 DNL1|DRNI deoxyribonuclease 1 protein-coding 123.667-18 chr11 94009671 94009963 + 0.666667 NA Intergenic FordPrefect_a|DNA|hAT-Tip100 -11537 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 167.667-67 chr4 90448330 90448888 + 0.666667 NA intron (NM_207491, intron 4 of 7) intron (NM_207491, intron 4 of 7) 213578 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 156.167-28 chr16 5386489 5386951 + 0.666667 NA Intergenic L2c|LINE|L2 229530 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 200-48 chr3 104254611 104254983 + 0.666667 NA Intergenic Intergenic -730681 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 122.833-65 chr4 74405726 74405977 + 0.666667 NA Intergenic MIR|SINE|MIR -39285 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 147.167-14 chr11 23757718 23758048 + 0.666667 NA Intergenic THE1C|LTR|ERVL-MaLR -338693 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 160.5-47 chr5 51467118 51467494 + 0.666667 NA Intergenic Intergenic 83858 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 137-32 chr14 56860064 56860406 + 0.666667 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 47077 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 279.666 chr11 57393311 57394085 + 0.666667 NA Intergenic MLT1N2|LTR|ERVL-MaLR -3048 NM_001302927 5553 Hs.512633 NM_002728 ENSG00000186652 PRG2 BMPG|MBP|MBP1|proMBP proteoglycan 2, pro eosinophil major basic protein protein-coding 139-60 chr6 75688394 75688738 + 0.666667 NA intron (NM_001100409, intron 15 of 22) intron (NM_001100409, intron 15 of 22) -60673 NM_001368138 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 157.667-29 chr18 44568625 44569109 + 0.666667 NA Intergenic MIRc|SINE|MIR 37088 NR_131768 105667213 Hs.135737 NR_131768 LINC01601 - long intergenic non-protein coding RNA 1601 ncRNA 149.333-13 chr10 82373270 82373674 + 0.666667 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -140552 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 205.667-50 chr6 21125957 21126724 + 0.666667 NA intron (NM_017774, intron 13 of 15) MER5B|DNA|hAT-Charlie 385552 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 114-6 chr1 94416008 94416283 + 0.666667 NA Intergenic L3|LINE|CR1 -2232 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 181-36 chr2 189112567 189112917 + 0.666667 NA intron (NM_000393, intron 1 of 53) intron (NM_000393, intron 1 of 53) 20369 NR_036076 100422908 NR_036076 ENSG00000264725 MIR3129 mir-3129 microRNA 3129 ncRNA 135.833-49 chr3 99068901 99069201 + 0.666667 NA Intergenic MER74A|LTR|ERVL -167356 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 134-33 chr13 65025302 65025547 + 0.666667 NA Intergenic L1MC3|LINE|L1 -840623 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 143.167-57 chr4 73252372 73252748 + 0.666667 NA intron (NM_032217, intron 1 of 33) intron (NM_032217, intron 1 of 33) 6238 NM_032217 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 180.833-6 chr10 66059034 66059372 + 0.666667 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 487778 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 193.667-34 chr3 43266649 43266995 + 0.666667 NA Intergenic Intergenic -19690 NM_001330750 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 203.667-2 chr1 111091816 111092226 + 0.666667 NA Intergenic MSTB|LTR|ERVL-MaLR -47362 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 159-49 chr22 44769569 44769910 + 0.666667 NA intron (NM_181335, intron 1 of 11) LTR8A|LTR|ERV1 17181 NM_001017526 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 154.333-3 chr1 192737124 192737536 + 0.666667 NA Intergenic Intergenic 21002 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 249.666-3 chr9 37794280 37794991 + 0.666667 NA Intergenic L1MB3|LINE|L1 -5919 NM_001286810 79269 Hs.118394 NM_024345 ENSG00000122741 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 144.333-78 chr7 17364921 17365400 + 0.666667 NA Intergenic Intergenic -9757 NR_110014 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 161-8 chr10 67277205 67277643 + 0.666667 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 125986 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 187-39 chr6 101278612 101278924 + 0.666667 NA Intergenic Intergenic -120217 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 210.833-18 chr2 176474920 176475437 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR 125874 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 119-37 chr16 9104680 9104888 + 0.666667 NA intron (NM_014117, intron 3 of 3) intron (NM_014117, intron 3 of 3) 13140 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 132-19 chr13 64429594 64429848 + 0.666667 NA Intergenic Intergenic -353710 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 113.667-86 chr3 121178151 121178378 + 0.666667 NA intron (NM_001348343, intron 9 of 27) L1MB3|LINE|L1 128624 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 124.333-39 chr17 59166454 59166775 + 0.666667 NA intron (NM_018304, intron 1 of 9) intron (NM_018304, intron 1 of 9) 10868 NM_018304 55771 Hs.631750 NM_018304 ENSG00000068489 PRR11 - proline rich 11 protein-coding 142.5-23 chr14 71440897 71441300 + 0.666667 NA intron (NM_001284247, intron 1 of 23) intron (NM_001284247, intron 1 of 23) 2159 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 222.833-20 chr9 11182403 11182953 + 0.666667 NA Intergenic Intergenic 569472 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 182-25 chr2 96433389 96434011 + 0.666667 NA Intergenic MER31-int|LTR|ERV1 71657 NM_001285486 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 181-47 chr3 160374213 160374606 + 0.666667 NA intron (NR_148401, intron 3 of 18) AluJb|SINE|Alu 9357 NM_001190242 57560 Hs.478095 NM_020800 ENSG00000068885 IFT80 ATD2|SRTD2|WDR56 intraflagellar transport 80 protein-coding 132.5-12 chr11 79346809 79347219 + 0.666667 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 55095 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 151.5-69 chr7 144941913 144942202 + 0.666667 NA Intergenic Intergenic -106004 NM_001042482 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 148.5-71 chr8 126045433 126045704 + 0.666667 NA Intergenic L1PA15-16|LINE|L1 -94371 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 154.333-77 chr8 114275121 114275685 + 0.666667 NA Intergenic Intergenic -838464 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 136.167-27 chr17 53642361 53642573 + 0.666667 NA Intergenic L1MA1|LINE|L1 -180460 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 265.333-2 chr1 35711658 35712324 + 0.666667 NA Intergenic AluSx3|SINE|Alu 4920 NM_001348691 127703 Hs.112023 NM_152374 ENSG00000142686 C1orf216 - chromosome 1 open reading frame 216 protein-coding 118.5-73 chr4 48873375 48873579 + 0.666667 NA Intergenic L1MA3|LINE|L1 -13274 NR_146806 100861517 Hs.661065 NR_146806 ENSG00000248256 OCIAD1-AS1 - OCIAD1 antisense RNA 1 ncRNA 134-59 chr2 81256255 81256567 + 0.666667 NA Intergenic L1M1|LINE|L1 210535 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 125.167-64 chr5 107845064 107845264 + 0.666667 NA Intergenic Intergenic -174227 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 407.333-2 chr12 42177962 42178678 + 0.666667 NA intron (NR_135139, intron 4 of 6) MER5B|DNA|hAT-Charlie -33446 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 136.167-39 chr2 74067154 74067412 + 0.666667 NA intron (NM_001287491, intron 4 of 11) MIR|SINE|MIR 64591 NM_001366022 200424 Hs.208546 NM_001287491 ENSG00000187605 TET3 hCG_40738 tet methylcytosine dioxygenase 3 protein-coding 137.667-78 chr5 11170153 11170389 + 0.666667 NA intron (NM_001288715, intron 10 of 20) intron (NM_001288715, intron 10 of 20) -409037 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 145.667-73 chr4 65275274 65275623 + 0.666667 NA Intergenic Intergenic -270948 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 142.833-59 chr5 67687470 67687781 + 0.666667 NA Intergenic Intergenic -40836 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 137.333-75 chr5 77305783 77306082 + 0.666667 NA intron (NM_001349749, intron 2 of 22) intron (NM_001349749, intron 2 of 22) 95252 NM_001029851 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 168.333-64 chr9 120229897 120230286 + 0.666667 NA Intergenic MER20B|DNA|hAT-Charlie 14959 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 128.167-74 chr6 65023221 65023502 + 0.666667 NA intron (NM_001292009, intron 13 of 43) intron (NM_001292009, intron 13 of 43) -278057 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 164.5-59 chr8 111685708 111686004 + 0.666667 NA Intergenic Intergenic 309217 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 117.5-56 chr5 41558507 41558797 + 0.666667 NA Intergenic Intergenic -48051 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 245.5-11 chr21 28627349 28628158 + 0.666667 NA Intergenic MER51A|LTR|ERV1 88435 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 301.333-10 chr7 51717762 51718274 + 0.666667 NA Intergenic Intergenic -324762 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 155-43 chr20 2002841 2003128 + 0.666667 NA intron (NR_134520, intron 3 of 3) intron (NR_134520, intron 3 of 3) -8699 NM_001190899 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 113.667-89 chr4 20497343 20497640 + 0.666667 NA intron (NM_001289135, intron 9 of 35) intron (NM_001289135, intron 9 of 35) -30784 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 169.667-67 chr7 30720177 30720508 + 0.666667 NA Intergenic Intergenic -20239 NM_001202475 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 152.833-29 chr2 49809868 49810316 + 0.666667 NA Intergenic Intergenic 164111 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 192.667-50 chr7 39221517 39222100 + 0.666667 NA intron (NM_001370959, intron 4 of 9) L1ME3Cz|LINE|L1 107326 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 169-23 chr2 17840912 17841337 + 0.666667 NA Intergenic Intergenic 24664 NM_001105569 343930 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 251.5-7 chr15 57724727 57725285 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger 18292 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 144-7 chr10 113002328 113002755 + 0.666667 NA intron (NM_001367943, intron 4 of 14) (TG)n|Simple_repeat|Simple_repeat -42814 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 189.667-35 chr3 194947029 194947362 + 0.666667 NA Intergenic Intergenic -147393 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 124.667-47 chr17 58622568 58622824 + 0.666667 NA intron (NM_031272, intron 4 of 31) intron (NM_031272, intron 4 of 31) 69359 NM_198393 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 117.833-84 chr9 38331244 38331511 + 0.666667 NA Intergenic MER68|LTR|ERVL -61325 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 117.667-93 chr4 140392542 140392758 + 0.666667 NA exon (NM_004362, exon 12 of 15) exon (NM_004362, exon 12 of 15) 19140 NM_001153484 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 156.667-63 chr4 39194662 39195001 + 0.666667 NA intron (NM_025132, intron 5 of 36) intron (NM_025132, intron 5 of 36) 12302 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 141.333-73 chr5 14645156 14645435 + 0.666667 NA Intergenic Charlie1b|DNA|hAT-Charlie 7087 NR_132981 106635684 NR_132981 SNORD141B - small nucleolar RNA, C/D box 141B snoRNA 150.667-37 chr15 51755111 51755459 + 0.666667 NA intron (NM_001142885, intron 1 of 8) intron (NM_001142885, intron 1 of 8) 3688 NM_014548 29767 Hs.513734 NM_014548 ENSG00000128872 TMOD2 N-TMOD|NTMOD tropomodulin 2 protein-coding 200.167-21 chr18 2188496 2188811 + 0.666667 NA Intergenic Intergenic 382852 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 207.667-36 chr4 108825942 108826395 + 0.666667 NA intron (NM_198721, intron 32 of 36) intron (NM_198721, intron 32 of 36) -63115 NM_001331033 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 119.5-83 chr5 121323323 121323611 + 0.666667 NA intron (NR_104999, intron 1 of 2) L1MEg|LINE|L1 917 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 123.833-56 chr6 169302586 169302869 + 0.666667 NA Intergenic L1PB4|LINE|L1 -48613 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 144.167-55 chr4 81582791 81583163 + 0.666667 NA Intergenic Intergenic -111070 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 193-16 chr14 71306840 71307260 + 0.666667 NA Intergenic Intergenic -13426 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 268-13 chr20 32845747 32846357 + 0.666667 NA intron (NM_012325, intron 5 of 6) intron (NM_012325, intron 5 of 6) -12871 NM_001143967 388795 NM_001143967 ENSG00000215529 EFCAB8 - EF-hand calcium binding domain 8 protein-coding 212.5-14 chr2 66327067 66327642 + 0.666667 NA Intergenic Intergenic 30974 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 174.833-41 chr5 132206466 132206816 + 0.666667 NA intron (NM_001365681, intron 7 of 13) L1M5|LINE|L1 11277 NR_106888 102465498 NR_106888 ENSG00000283678 MIR6830 hsa-mir-6830 microRNA 6830 ncRNA 210.667-46 chr5 108350172 108350844 + 0.5 NA intron (NM_001163315, intron 3 of 8) HAL1|LINE|L1 31590 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 128.833-62 chr4 25199697 25200056 + 0.5 NA Intergenic Intergenic -34157 NM_018323 55300 Hs.191701 NM_018323 ENSG00000038210 PI4K2B PI4KIIB|PIK42B phosphatidylinositol 4-kinase type 2 beta protein-coding 137.667-51 chr2 64862241 64862553 + 0.5 NA intron (NR_110224, intron 1 of 4) MLT1H|LTR|ERVL-MaLR 1234 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 225.5-24 chr18 58703968 58704581 + 0.5 NA intron (NM_006785, intron 4 of 16) L1ME2|LINE|L1 -32401 NM_001289967 101927322 Hs.644875 NM_001289967 LOC101927322 - uncharacterized LOC101927322 protein-coding 146.167-51 chr5 10036766 10037162 + 0.5 NA Intergenic L2c|LINE|L2 -133140 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 198.667-44 chr4 149442253 149442801 + 0.5 NA intron (NM_001363507, intron 12 of 13) MLT1-int|LTR|ERVL-MaLR 288232 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 132.167-72 chr8 134477022 134477536 + 0.5 NA TTS (NM_001289394) TTS (NM_001289394) -120792 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 189.833-13 chr19 29998508 29999063 + 0.5 NA intron (NM_001252641, intron 4 of 10) L1MB2|LINE|L1 56546 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 135-57 chr3 44036423 44036789 + 0.5 NA Intergenic MIRb|SINE|MIR -77606 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 141-70 chr5 12018602 12019182 + 0.5 NA Intergenic Intergenic -114446 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 174-49 chr5 103131103 103131582 + 0.5 NA intron (NM_001345878, intron 2 of 28) MER2|DNA|TcMar-Tigger 11041 NM_001276277 23262 Hs.212046 NM_015216 ENSG00000145725 PPIP5K2 CFAP160|DFNB100|HISPPD1|IP7K2|VIP2 diphosphoinositol pentakisphosphate kinase 2 protein-coding 127.167-18 chr11 18876666 18876954 + 0.5 NA Intergenic L1ME4b|LINE|L1 58192 NM_147199 259249 Hs.711459 NM_147199 ENSG00000170255 MRGPRX1 GPCR|MGRG2|MRGX1|SNSR4 MAS related GPR family member X1 protein-coding 198.667-15 chr12 22578786 22579503 + 0.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -34598 NM_014802 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 127.333-39 chr15 96566052 96566389 + 0.5 NA Intergenic Intergenic 215434 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 133.667-4 chr1 57875598 57876011 + 0.5 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) 15223 NR_104364 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 188-18 chr11 111135207 111135665 + 0.5 NA Intergenic MER5B|DNA|hAT-Charlie -38118 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 126.667-87 chr7 6367469 6367851 + 0.5 NA Intergenic Intergenic -6867 NM_006908 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|MRD48|Rac-1|TC-25|p21-Rac1 Rac family small GTPase 1 protein-coding 140.333-91 chr8 133383039 133383364 + 0.5 NA Intergenic MER58B|DNA|hAT-Charlie -85897 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 116-26 chr14 79890690 79891093 + 0.5 NA Intergenic MER21-int|LTR|ERVL -320528 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 132.167-46 chr3 66837675 66838149 + 0.5 NA Intergenic Intergenic -99576 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 146.5-93 chr8 134485622 134486089 + 0.5 NA intron (NM_001174158, intron 13 of 13) intron (NM_001174158, intron 13 of 13) -112216 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 149.333-37 chr14 63044093 63044474 + 0.5 NA intron (NM_139318, intron 1 of 10) intron (NM_139318, intron 1 of 10) 1175 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 181.833-48 chr7 33121984 33122556 + 0.5 NA Intergenic L1MA2|LINE|L1 -7015 NM_001348036 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 133-99 chr8 137357191 137357704 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 56141 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 172-8 chr11 30625860 30626423 + 0.5 NA Intergenic Intergenic -39788 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 173.5-55 chr8 83263077 83263460 + 0.5 NA Intergenic L1MC4|LINE|L1 -140490 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 161.833-32 chr4 117132887 117133480 + 0.5 NA Intergenic L1MC2|LINE|L1 -47607 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 183.167-27 chr2 186060189 186060691 + 0.5 NA intron (NR_110218, intron 3 of 5) intron (NR_110218, intron 3 of 5) 25877 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 121.333-6 chr1 95503813 95504143 + 0.5 NA Intergenic Intergenic -6138 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 190.833-14 chr14 66351040 66351542 + 0.5 NA Intergenic L1MB1|LINE|L1 -135080 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 155.833-24 chr18 66472964 66473532 + 0.5 NA Intergenic Intergenic 130842 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 179.333-39 chr3 109679070 109679678 + 0.5 NA Intergenic Intergenic 76546 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 139.333-23 chr11 79021795 79022302 + 0.5 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 380061 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 113.833-55 chr3 80279699 80280022 + 0.5 NA Intergenic L1ME1|LINE|L1 -485037 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 129.167-59 chr5 51719685 51720047 + 0.5 NA Intergenic Intergenic -288165 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 143.5-33 chr18 22490461 22490920 + 0.5 NA Intergenic Intergenic -72775 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 153.167-2 chr1 70490800 70491195 + 0.5 NA Intergenic L1M1|LINE|L1 79729 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 134.5-31 chr14 71279270 71279584 + 0.5 NA Intergenic AluSz|SINE|Alu -41049 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 118.167-60 chr7 56116756 56117025 + 0.5 NA promoter-TSS (NM_001145712) promoter-TSS (NM_001145712) -473 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 133.833-38 chr2 36005786 36006314 + 0.5 NA Intergenic Intergenic 349520 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 161.333-18 chr12 124991554 124991949 + 0.5 NA Intergenic AluJo|SINE|Alu -1894 NM_080626 140707 Hs.596464 NM_080626 ENSG00000184992 BRI3BP BNAS1|HCCR-1|HCCR-2|HCCRBP-1|HCCRBP-3|KG19 BRI3 binding protein protein-coding 133-61 chr4 20472280 20472617 + 0.5 NA intron (NM_001289135, intron 5 of 35) intron (NM_001289135, intron 5 of 35) -55827 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 187.833 chr1 59993592 59994099 + 0.5 NA intron (NM_152377, intron 11 of 11) AluSq|SINE|Alu -67047 NR_134982 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 132.667-100 chr8 144229287 144229738 + 0.5 NA intron (NM_001288814, intron 13 of 41) AluJo|SINE|Alu 33225 NR_107057 102465906 NR_107057 ENSG00000284054 MIR7112 MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2 microRNA 7112 ncRNA 155-20 chr12 104174537 104174898 + 0.5 NA Intergenic Intergenic -36507 NM_006166 4801 Hs.84928 NM_006166 ENSG00000120837 NFYB CBF-A|CBF-B|HAP3|NF-YB nuclear transcription factor Y subunit beta protein-coding 118.667-32 chr14 62253862 62254317 + 0.5 NA Intergenic Intergenic -114116 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 165.833-29 chr18 5053259 5053821 + 0.5 NA Intergenic Intergenic -27642 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 114.667-13 chr11 63988084 63988336 + 0.5 NA intron (NR_003089, intron 1 of 5) MIR3|SINE|MIR 2357 NM_017670 55611 Hs.473788 NM_017670 ENSG00000167770 OTUB1 HSPC263|OTB1|OTU1 OTU deubiquitinase, ubiquitin aldehyde binding 1 protein-coding 203.667-32 chr6 42596337 42597073 + 0.5 NA intron (NM_015255, intron 4 of 46) L1MB5|LINE|L1 32676 NM_001184801 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 120.167-13 chr10 115580669 115581027 + 0.5 NA intron (NM_207303, intron 26 of 28) L1MA9|LINE|L1 487483 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 224.5-14 chr20 16819409 16819928 + 0.5 NA Intergenic Intergenic 71315 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 136-60 chr4 160465056 160465577 + 0.5 NA Intergenic Intergenic -687532 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 138.167-68 chr6 54335353 54335890 + 0.5 NA intron (NM_014464, intron 4 of 10) intron (NM_014464, intron 4 of 10) 27180 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 146.167-56 chr5 123742947 123743293 + 0.5 NA Intergenic AluSc|SINE|Alu 197703 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 130.833-47 chr4 55332070 55332431 + 0.5 NA Intergenic L1ME3|LINE|L1 -13992 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 124.167-3 chr1 59821997 59822347 + 0.5 NA intron (NM_015888, intron 2 of 21) intron (NM_015888, intron 2 of 21) 7223 NM_015888 51361 Hs.378836 NM_015888 ENSG00000134709 HOOK1 HK1 hook microtubule tethering protein 1 protein-coding 157.333-83 chrX 94872152 94872547 + 0.5 NA Intergenic L1M4|LINE|L1 190877 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 142.167-77 chr8 47529568 47530085 + 0.5 NA intron (NM_001352958, intron 10 of 21) L1MC2|LINE|L1 -124262 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 122.667-39 chr18 2853651 2854097 + 0.5 NA intron (NM_032048, intron 2 of 7) intron (NM_032048, intron 2 of 7) 6868 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 132.833-32 chr2 73942093 73942528 + 0.5 NA intron (NM_080918, intron 2 of 4) intron (NM_080918, intron 2 of 4) 15430 NR_134896 1716 Hs.469022 NM_001929 ENSG00000114956 DGUOK MTDPS3|NCPH|PEOB4|dGK deoxyguanosine kinase protein-coding 203.667-26 chr3 83682215 83682827 + 0.5 NA Intergenic Intergenic 1187054 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 125.333-14 chr10 11437513 11437831 + 0.5 NA Intergenic Intergenic -92998 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 117.5-4 chr1 203893652 203894162 + 0.5 NA Intergenic L1MEc|LINE|L1 32060 NM_001328637 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 115.667-22 chr12 12160513 12160996 + 0.5 NA intron (NM_002336, intron 10 of 22).2 MIR3|SINE|MIR 48802 NR_036262 100422885 NR_036262 ENSG00000283498 MIR1244-2 - microRNA 1244-2 ncRNA 140.833-21 chr15 76703275 76703654 + 0.5 NA intron (NR_148227, intron 18 of 32) intron (NR_148227, intron 18 of 32) 116817 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 169.167-15 chr14 62883619 62884274 + 0.5 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 161512 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 132.833-64 chr8 79598178 79598665 + 0.5 NA Intergenic Intergenic -12696 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 159.333-42 chr2 187012779 187013388 + 0.5 NA Intergenic Intergenic -163913 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 173.333-27 chr18 77852696 77853217 + 0.5 NA Intergenic Intergenic 140771 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 122.5-75 chr5 151284702 151285090 + 0.5 NA intron (NM_181774, intron 6 of 9) L1MB4|LINE|L1 18870 NM_001145017 285641 Hs.720893 NM_181774 ENSG00000186334 SLC36A3 PAT3|TRAMD2|tramdorin2 solute carrier family 36 member 3 protein-coding 134.5-55 chr4 40814877 40815291 + 0.5 NA 3' UTR (NM_001166054, exon 7 of 7) 3' UTR (NM_001166054, exon 7 of 7) 42071 NM_001166052 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 179.667-40 chr5 26182648 26183206 + 0.5 NA Intergenic Intergenic 855659 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 152.667-20 chr12 11877229 11877784 + 0.5 NA intron (NM_001987, intron 5 of 7) intron (NM_001987, intron 5 of 7) -172355 NM_001370268 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 122.833-35 chr16 13321858 13322189 + 0.5 NA Intergenic Intergenic 420425 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 125.5-44 chr2 210737303 210737888 + 0.5 NA Intergenic AluJr|SINE|Alu 120024 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 187.333-21 chr15 91005891 91006411 + 0.5 NA intron (NM_001289148, intron 10 of 21) intron (NM_001289148, intron 10 of 21) -11616 NM_003981 9055 Hs.366401 NM_003981 ENSG00000198901 PRC1 ASE1 protein regulator of cytokinesis 1 protein-coding 113.5-55 chr2 240162074 240162357 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -21557 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 142.833-26 chr16 74859225 74859776 + 0.5 NA Intergenic AluJo|SINE|Alu -84680 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 130-37 chr15 23776864 23777202 + 0.5 NA Intergenic L1PA16|LINE|L1 -89728 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 131.667-114 chr6 127212253 127212694 + 0.5 NA Intergenic L2|LINE|L2 -54209 NM_001242851 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 127.667-55 chr3 47932832 47933252 + 0.5 NA intron (NM_002375, intron 3 of 18) AluJo|SINE|Alu 83487 NR_031595 100302232 NR_031595 ENSG00000221585 MIR1226 MIRN1226|hsa-mir-1226|mir-1226 microRNA 1226 ncRNA 125.333-126 chr8 136910130 136910655 + 0.5 NA Intergenic HERVK9-int|LTR|ERVK 379594 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 152.833-7 chr10 16110254 16110594 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -249891 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 167.333-51 chr4 86367777 86368521 + 0.5 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) 2718 NM_001318068 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 137.5-90 chr7 94576691 94577179 + 0.5 NA Intergenic L1M4|LINE|L1 67126 NM_001363426 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 188.167-31 chr3 156843734 156844243 + 0.5 NA intron (NM_001004316, intron 2 of 12) intron (NM_001004316, intron 2 of 12) 17635 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 166-73 chr8 134782660 134783049 + 0.5 NA Intergenic Intergenic 17753 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 122.167-48 chr4 54219403 54219899 + 0.5 NA Intergenic Intergenic -9642 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 154-14 chr11 69256933 69257523 + 0.5 NA Intergenic Intergenic -36927 NM_138768 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 262-14 chr3 21004006 21004761 + 0.5 NA Intergenic L1M5|LINE|L1 -401343 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 154.5-41 chr2 231990126 231990510 + 0.5 NA intron (NR_046477, intron 1 of 18) intron (NR_046477, intron 1 of 18) 28605 NR_046477 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 134-38 chr14 37467003 37467376 + 0.5 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 128060 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 157.667-78 chrX 87895117 87895769 + 0.5 NA Intergenic Intergenic 377641 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 209-40 chr7 88891858 88892543 + 0.5 NA intron (NM_181646, intron 1 of 3) L1MEd|LINE|L1 -96463 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 120.5-68 chr5 11522142 11522409 + 0.5 NA intron (NM_001288715, intron 2 of 20) MIRc|SINE|MIR 66642 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 197-38 chr4 179097205 179097673 + 0.5 NA Intergenic L1MCc|LINE|L1 -1189503 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 193.333-12 chr11 66706511 66706997 + 0.5 NA intron (NM_006946, intron 12 of 36) AluSz|SINE|Alu 14645 NM_006946 6712 Hs.26915 NM_006946 ENSG00000173898 SPTBN2 GTRAP41|SCA5|SCAR14 spectrin beta, non-erythrocytic 2 protein-coding 146-63 chr7 41611004 41611474 + 0.5 NA Intergenic MLT2D|LTR|ERVL -82680 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 161.833-40 chr6 77001628 77002186 + 0.5 NA Intergenic L1ME2|LINE|L1 -408284 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 120.5 chr1 73841741 73842381 + 0.5 NA Intergenic L1MA9|LINE|L1 167382 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 121.5-52 chr2 50295453 50295832 + 0.5 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 52112 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 117.5-28 chr2 154331126 154331572 + 0.5 NA intron (NM_052917, intron 9 of 12) AluJr|SINE|Alu 126089 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 140.333-65 chr5 37329923 37330370 + 0.5 NA intron (NM_001278312, intron 14 of 33) intron (NM_001278312, intron 14 of 33) 40960 NM_004298 9631 Hs.547696 NM_004298 ENSG00000113569 NUP155 ATFB15|N155 nucleoporin 155 protein-coding 127.833-71 chr7 32064458 32064829 + 0.5 NA intron (NM_001191059, intron 2 of 18) intron (NM_001191059, intron 2 of 18) 5764 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 138.5-67 chr6 141463634 141464024 + 0.5 NA Intergenic MIR|SINE|MIR 624970 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 166.167-41 chr4 150300961 150301373 + 0.5 NA intron (NM_001199282, intron 53 of 56) intron (NM_001199282, intron 53 of 56) 222722 NM_001040261 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 133.5-8 chr1 203510725 203511076 + 0.5 NA Intergenic Intergenic 16747 NM_014359 26254 Hs.632468 NM_014359 ENSG00000188770 OPTC OPT opticin protein-coding 139.5-6 chr1 195756365 195756972 + 0.5 NA Intergenic AluJr|SINE|Alu 332047 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 148.667-9 chr10 31171137 31171610 + 0.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -16510 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 113.833-43 chr2 176120141 176120457 + 0.5 NA TTS (NM_002148) TTS (NM_002148) -2420 NM_014213 3235 Hs.236646 NM_014213 ENSG00000128709 HOXD9 HOX4|HOX4C|Hox-4.3|Hox-5.2 homeobox D9 protein-coding 144.333-54 chr20 52006687 52007246 + 0.5 NA Intergenic MER96B|DNA|hAT-Tip100 98518 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 149.167-36 chr21 31527455 31528004 + 0.5 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 31358 NM_001353690 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 115.833-17 chr13 96020366 96020873 + 0.5 NA intron (NM_020121, intron 4 of 38) intron (NM_020121, intron 4 of 38) 32782 NM_020121 55757 Hs.193226 NM_020121 ENSG00000102595 UGGT2 HUGT2|UGCGL2|UGT2 UDP-glucose glycoprotein glucosyltransferase 2 protein-coding 145-39 chr18 33628152 33628466 + 0.5 NA intron (NM_030632, intron 2 of 11) intron (NM_030632, intron 2 of 11) 50090 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 142.833-4 chr10 93666819 93667167 + 0.5 NA TTS (NR_144635) TTS (NR_144635) 35579 NR_144635 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 118.833-18 chr13 36296033 36296468 + 0.5 NA intron (NM_001144981, intron 1 of 7) AluSx3|SINE|Alu 1564 NM_001144981 728591 Hs.656745 NM_001144981 ENSG00000242715 CCDC169 C13orf38 coiled-coil domain containing 169 protein-coding 155.833-43 chr4 2666207 2666634 + 0.5 NA intron (NM_001256668, intron 10 of 19) L1M4|LINE|L1 40988 NM_001256668 8603 Hs.652364 NM_003704 ENSG00000125386 FAM193A C4orf8|RES4-22 family with sequence similarity 193 member A protein-coding 130.333-39 chr16 82277855 82278161 + 0.5 NA Intergenic MIR|SINE|MIR -107784 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 175.333-16 chr14 54164874 54165334 + 0.5 NA Intergenic Intergenic -208213 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 145.5-45 chr3 24736198 24736759 + 0.5 NA Intergenic Intergenic -92845 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 118-32 chr14 59240385 59240743 + 0.5 NA intron (NM_001270520, intron 1 of 24) MLT1K|LTR|ERVL-MaLR -22877 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 150.667-44 chr18 49143829 49144320 + 0.5 NA intron (NM_001353210, intron 14 of 16) L1MC5a|LINE|L1 -94306 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 114-56 chr2 123116717 123117067 + 0.5 NA Intergenic L1PA15|LINE|L1 -43411 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 171.167-17 chr12 65177414 65177860 + 0.5 NA intron (NM_001167614, intron 1 of 12) intron (NM_001167614, intron 1 of 12) 8054 NM_014319 23592 Hs.744150 NM_014319 ENSG00000174106 LEMD3 MAN1 LEM domain containing 3 protein-coding 189.667-30 chr2 184529423 184530084 + 0.5 NA Intergenic MER52-int|LTR|ERV1 -68776 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 133.333-66 chr21 26961372 26961783 + 0.5 NA intron (NM_007038, intron 1 of 7) intron (NM_007038, intron 1 of 7) 5511 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 115.333-100 chr7 55822057 55822340 + 0.5 NA intron (NM_207366, intron 6 of 9) L1M3|LINE|L1 40554 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 151.333-77 chr6 56950340 56950947 + 0.5 NA intron (NM_001144769, intron 2 of 96) intron (NM_001144769, intron 2 of 96) 4187 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 148.167-19 chr12 51386700 51387287 + 0.5 NA intron (NM_007210, intron 2 of 11) intron (NM_007210, intron 2 of 11) -4324 NM_001267615 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 168.667-41 chr2 181796382 181796943 + 0.5 NA Intergenic Intergenic -95068 NM_006751 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 159.333-10 chr10 41807184 41807665 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 560621 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 146.833-35 chr20 59266899 59267343 + 0.5 NA Intergenic L1MB4|LINE|L1 -33490 NM_207032 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 140.5-73 chr7 91708571 91708954 + 0.5 NA Intergenic L1MA4A|LINE|L1 171940 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 190.333-21 chr17 9801577 9802223 + 0.5 NA TTS (NM_001310219) TTS (NM_001310219) -10308 NM_001105571 201140 Hs.61684 NM_001105571 ENSG00000184544 DHRS7C SDR32C2 dehydrogenase/reductase 7C protein-coding 142.167-12 chr10 74251132 74251466 + 0.5 NA intron (NM_001369124, intron 3 of 9) intron (NM_001369124, intron 3 of 9) 74536 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 156.333-76 chr5 127238374 127238710 + 0.5 NA Intergenic MIR|SINE|MIR -52222 NM_001308119 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 118.833-9 chr11 18325386 18325933 + 0.5 NA intron (NM_005316, intron 1 of 14) intron (NM_005316, intron 1 of 14) 3092 NM_005316 2965 Hs.577202 NM_005316 ENSG00000110768 GTF2H1 BTF2|P62|TFB1|TFIIH general transcription factor IIH subunit 1 protein-coding 152.167-41 chr3 67579748 67580335 + 0.5 NA intron (NM_001177599, intron 2 of 10) intron (NM_001177599, intron 2 of 10) 74573 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 113.5-63 chr3 120521343 120521784 + 0.5 NA Intergenic Intergenic -70571 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 169.5-45 chr3 64122884 64123457 + 0.5 NA intron (NM_001370528, intron 7 of 7) L1M5|LINE|L1 19700 NR_046701 100874242 Hs.668874 NR_046701 PRICKLE2-AS2 - PRICKLE2 antisense RNA 2 ncRNA 128-96 chrX 51777114 51777539 + 0.5 NA Intergenic MER4B-int|LTR|ERV1 -25750 NM_001005332 9500 Hs.5258 NM_006986 ENSG00000179222 MAGED1 DLXIN-1|NRAGE MAGE family member D1 protein-coding 142.667-85 chr5 156135604 156136075 + 0.5 NA Intergenic Intergenic -190918 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 122.333-54 chr2 143313175 143313434 + 0.5 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 183885 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 131.667-127 chr8 127116789 127117172 + 0.5 NA Intergenic Intergenic -34759 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 117.667-116 chr7 44395419 44395872 + 0.5 NA intron (NM_015332, intron 4 of 5) L1MB5|LINE|L1 -70014 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 126.667-15 chr11 83323000 83323400 + 0.5 NA Intergenic L1MA4A|LINE|L1 -36793 NM_001286119 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 164.167-22 chr15 68300889 68301328 + 0.5 NA 3' UTR (NM_001004439, exon 30 of 30) 3' UTR (NM_001004439, exon 30 of 30) 23363 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 155.833-28 chr2 82058292 82058747 + 0.5 NA Intergenic L1MA8|LINE|L1 -591573 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 168-59 chr5 127032636 127033091 + 0.5 NA Intergenic Intergenic -2305 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 150.5-38 chr2 27569459 27569830 + 0.5 NA Intergenic Intergenic -6878 NM_032266 84226 Hs.131021 NM_032266 ENSG00000221843 C2orf16 - chromosome 2 open reading frame 16 protein-coding 129.5-87 chr8 106648537 106648907 + 0.5 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) -9086 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 120.167-69 chr6 63898384 63898695 + 0.5 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 91703 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 119-6 chr1 115498016 115498387 + 0.5 NA Intergenic MER77B|LTR|ERVL -143769 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 182.833-31 chr20 55227456 55227931 + 0.5 NA Intergenic L1M4a1|LINE|L1 -195350 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 210.333-10 chr14 45223123 45223676 + 0.5 NA intron (NM_018353, intron 11 of 16) AluSg|SINE|Alu 29803 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 198.833-15 chr20 7115336 7115799 + 0.5 NA Intergenic Intergenic 138635 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 133.167-51 chr5 89537128 89537484 + 0.5 NA Intergenic Intergenic 479414 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 155.167-42 chr6 133375684 133376193 + 0.5 NA intron (NM_172103, intron 2 of 18) intron (NM_172103, intron 2 of 18) 134439 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 140.5-61 chr5 108497358 108497861 + 0.5 NA Intergenic Intergenic -115511 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 113.5-71 chr5 7949033 7949343 + 0.5 NA Intergenic Intergenic 80040 NR_157171 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 155-75 chr8 101179045 101179626 + 0.5 NA Intergenic L2c|LINE|L2 26338 NM_016096 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 157-5 chr1 105116335 105116780 + 0.5 NA Intergenic L1MEf|LINE|L1 502378 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 140.5-78 chr8 116881003 116881335 + 0.5 NA Intergenic Intergenic -6303 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|MGS|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 135-95 chr9 130485484 130485859 + 0.5 NA intron (NM_054012, intron 11 of 14) intron (NM_054012, intron 11 of 14) 40710 NM_054012 445 Hs.160786 NM_000050 ENSG00000130707 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 144-52 chr4 52728026 52728342 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 14935 NR_003016 677810 Hs.635034 NR_003016 ENSG00000212588 SNORA26 HBI-6 small nucleolar RNA, H/ACA box 26 snoRNA 133.667-94 chr8 76779924 76780543 + 0.5 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -96958 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 162.833-16 chr16 25344251 25344664 + 0.5 NA Intergenic Intergenic -86612 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 131.667-116 chr7 10603970 10604359 + 0.5 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -98512 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 158.5-35 chr2 35139151 35139565 + 0.5 NA Intergenic L1PA13|LINE|L1 -332047 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 150.833-55 chr8 142607652 142608021 + 0.5 NA Intergenic MER77|LTR|ERVL 6643 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 172-51 chr4 84089276 84089769 + 0.5 NA intron (NR_125909, intron 7 of 8) Charlie8|DNA|hAT-Charlie 209647 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 117.667-15 chr10 51363878 51364243 + 0.5 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 64487 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 120.167-28 chr16 72863239 72863589 + 0.5 NA intron (NM_001164766, intron 3 of 8) AluJo|SINE|Alu 184714 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 153.5-20 chr14 67023629 67024103 + 0.5 NA intron (NM_001024218, intron 9 of 21) intron (NM_001024218, intron 9 of 21) -165574 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 168-81 chr9 73163396 73164011 + 0.5 NA intron (NM_000700, intron 8 of 12) intron (NM_000700, intron 8 of 12) 11838 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 135.333-17 chr11 130627813 130628083 + 0.5 NA Intergenic L1MB7|LINE|L1 -38787 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 149.833-54 chr7 104191240 104191798 + 0.5 NA intron (NM_181747, intron 5 of 8) intron (NM_181747, intron 5 of 8) 16494 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 144.667-37 chr13 104412172 104412685 + 0.5 NA Intergenic Intergenic 987228 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 144.167-71 chr8 51123718 51124086 + 0.5 NA Intergenic L2a|LINE|L2 685543 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 162.333 chr1 107209625 107210143 + 0.5 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 61815 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 145.667-75 chr4 97651251 97651626 + 0.5 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 284512 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 128.333-71 chr2 200133414 200133737 + 0.5 NA Intergenic Intergenic -172304 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 137-43 chr17 66901510 66901843 + 0.5 NA Intergenic Intergenic -63031 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 124.833-76 chr5 152516762 152517238 + 0.5 NA Intergenic L1MC4|LINE|L1 -111721 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 131.833-17 chr14 60251033 60251400 + 0.5 NA intron (NM_177951, intron 2 of 3) intron (NM_177951, intron 2 of 3) 1995 NM_177951 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 151.333-5 chr1 239298548 239298906 + 0.5 NA Intergenic Intergenic -87841 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 126.667-62 chr4 33759725 33760126 + 0.5 NA Intergenic L1MD|LINE|L1 279968 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 129.667-109 chr9 101609955 101610420 + 0.5 NA intron (NM_133445, intron 6 of 8) intron (NM_133445, intron 6 of 8) -15218 NM_147180 5535 Hs.151167 NM_147180 ENSG00000188386 PPP3R2 PPP3RL protein phosphatase 3 regulatory subunit B, beta protein-coding 131.167-15 chr12 876578 876962 + 0.5 NA intron (NM_014823, intron 9 of 25) L1ME4b|LINE|L1 56306 NM_001297420 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 127.833-15 chr12 40435588 40436164 + 0.5 NA intron (NM_173600, intron 25 of 173) AluSc8|SINE|Alu 42482 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 121.833-76 chr9 77205510 77205931 + 0.5 NA intron (NM_001018038, intron 4 of 68) AluSx1|SINE|Alu -27803 NR_026668 100286938 Hs.662256 NR_026668 ENSG00000232998 VPS13A-AS1 - VPS13A antisense RNA 1 ncRNA 147.167-32 chr2 149397897 149398284 + 0.5 NA intron (NM_194317, intron 1 of 4) L1MD|LINE|L1 67503 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 133.333-85 chr3 156891321 156891726 + 0.5 NA intron (NM_001004316, intron 3 of 12) intron (NM_001004316, intron 3 of 12) 65170 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 228.333-26 chr5 40197064 40197641 + 0.5 NA Intergenic L1M5|LINE|L1 145061 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 156.333-22 chr12 60656164 60656690 + 0.5 NA Intergenic Intergenic 967057 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 133-15 chr10 105465577 105465982 + 0.5 NA Intergenic Intergenic 354554 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 169.667-37 chr2 41819323 41819755 + 0.5 NA Intergenic L1MD1|LINE|L1 -58016 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 136.833-59 chr5 155795421 155796039 + 0.5 NA Intergenic L1MEg|LINE|L1 -531027 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 148.333-84 chr5 155841114 155841608 + 0.5 NA Intergenic Intergenic -485396 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 190.333-25 chr18 8154259 8154722 + 0.5 NA intron (NM_002845, intron 14 of 30) MamSINE1|SINE|tRNA-RTE 212544 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 115.167-95 chr6 115405408 115405736 + 0.5 NA Intergenic L1M8|LINE|L1 238263 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 131.667-78 chr3 60129625 60129948 + 0.5 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -48877 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 180.834-2 chr1 101676624 101677614 + 0.5 NA Intergenic Intergenic 169961 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 157.5-72 chr9 87769043 87769406 + 0.5 NA Intergenic L1PA16|LINE|L1 -3691 NR_027917 392360 Hs.690450 NM_001023564 ENSG00000188029 CTSL3P CTSL3|HCTSL-s cathepsin L family member 3, pseudogene pseudo 136.167-22 chr15 78389614 78390040 + 0.5 NA Intergenic Intergenic -47604 NM_001354994 3658 Hs.436031 NM_004136 ENSG00000136381 IREB2 ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA iron responsive element binding protein 2 protein-coding 164.833-40 chr5 35507381 35507875 + 0.5 NA Intergenic L1PA13|LINE|L1 -110235 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 120.833-70 chr8 110175512 110175890 + 0.5 NA Intergenic MER33|DNA|hAT-Charlie -199930 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 128.667-73 chr3 19937212 19937779 + 0.5 NA intron (NM_001330688, intron 1 of 14) intron (NM_001330688, intron 1 of 14) -3278 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 167-5 chr10 14424406 14425105 + 0.5 NA Intergenic Intergenic -11821 NR_031668 100302116 NR_031668 ENSG00000221371 MIR1265 MIRN1265|hsa-mir-1265 microRNA 1265 ncRNA 140.5-81 chr9 25871951 25872287 + 0.5 NA Intergenic Intergenic 92063 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 124.833-10 chr10 119602928 119603358 + 0.5 NA Intergenic Intergenic -6114 NM_001323969 7073 Hs.501203 NM_003252 ENSG00000151923 TIAL1 TCBP|TIAR TIA1 cytotoxic granule associated RNA binding protein like 1 protein-coding 131.833-29 chr18 14037060 14037555 + 0.5 NA Intergenic Intergenic 95128 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 150.333-33 chr13 19723482 19724134 + 0.5 NA intron (NM_001354908, intron 6 of 8) intron (NM_001354908, intron 6 of 8) 59137 NR_003272 55269 Hs.213198 NM_001042414 ENSG00000121390 PSPC1 PSP1 paraspeckle component 1 protein-coding 125-13 chr10 80426664 80426980 + 0.5 NA intron (NM_001243782, intron 4 of 5) intron (NM_001243782, intron 4 of 5) 12989 NM_001243782 84293 Hs.500333 NM_032333 ENSG00000122378 PRXL2A Adrx|C10orf58|FAM213A|PAMM peroxiredoxin like 2A protein-coding 124.5-70 chr7 85296280 85296630 + 0.5 NA Intergenic L1MB8|LINE|L1 -124667 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 121.667-13 chr10 73451001 73451344 + 0.5 NA intron (NM_001142353, intron 10 of 13) L1M2|LINE|L1 -17611 NM_001024593 118490 Hs.631823 NM_001024593 ENSG00000166343 MSS51 ZMYND17 MSS51 mitochondrial translational activator protein-coding 134-24 chr11 99833892 99834345 + 0.5 NA intron (NM_001243270, intron 3 of 23) MER20B|DNA|hAT-Charlie 277973 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 135.833-13 chr13 33849916 33850313 + 0.5 NA intron (NM_181558, intron 8 of 8) intron (NM_181558, intron 8 of 8) 31965 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 160.167 chr1 61398587 61399128 + 0.5 NA intron (NM_001134673, intron 7 of 10) intron (NM_001134673, intron 7 of 10) -145339 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 158.333-25 chr14 35358734 35359412 + 0.5 NA Intergenic AluJb|SINE|Alu 45681 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA EDAID2|IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 175-60 chr8 105734383 105734913 + 0.5 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 325855 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 123.5-68 chr5 169760663 169761010 + 0.5 NA intron (NR_156756, intron 24 of 52) L2a|LINE|L2 123561 NM_004946 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 153.667-19 chr12 54619349 54619843 + 0.5 NA Intergenic L1M7|LINE|L1 -9134 NR_003039 644076 Hs.483519 NR_003039 ENSG00000257780 GLYCAM1 - glycosylation dependent cell adhesion molecule 1 (pseudogene) pseudo 115.5-95 chr7 100663095 100663409 + 0.5 NA intron (NR_133946, intron 2 of 2) L2b|LINE|L2 6691 NR_133946 105375429 Hs.489345 NR_133946 LOC105375429 - uncharacterized LOC105375429 ncRNA 156.333-67 chr3 181747878 181748381 + 0.5 NA Intergenic AluJo|SINE|Alu 36204 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 121-29 chr16 46404987 46405357 + 0.5 NA Intergenic Intergenic 163925 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 172.833-51 chr7 106393650 106394171 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -108927 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 193.167-30 chr7 5331145 5331742 + 0.5 NA intron (NM_001080495, intron 19 of 29) Charlie4a|DNA|hAT-Charlie 48500 NM_001300847 222962 Hs.4302 NM_153247 ENSG00000164638 SLC29A4 ENT4|PMAT solute carrier family 29 member 4 protein-coding 197.667-39 chr21 30839449 30840081 + 0.5 NA Intergenic Intergenic -10006 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 113.5-14 chr10 60417402 60417818 + 0.5 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -27735 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 123.833-49 chr5 87190290 87190721 + 0.5 NA intron (NR_105018, intron 2 of 3) intron (NR_105018, intron 2 of 3) 48696 NR_130914 55338 Hs.677194 NM_018382 LINC01949 - long intergenic non-protein coding RNA 1949 ncRNA 159-59 chr5 62758814 62759333 + 0.5 NA Intergenic Intergenic 180254 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 147.833-41 chr22 41325560 41326040 + 0.5 NA exon (NM_017590, exon 4 of 23) exon (NM_017590, exon 4 of 23) -23431 NM_001317930 5905 Hs.183800 NM_002883 ENSG00000100401 RANGAP1 Fug1|RANGAP|SD Ran GTPase activating protein 1 protein-coding 195.667 chr1 48574940 48575352 + 0.5 NA intron (NM_001323575, intron 11 of 12) MIR3|SINE|MIR -102938 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 177.667-18 chr13 21534860 21535345 + 0.5 NA intron (NM_152726, intron 4 of 11) intron (NM_152726, intron 4 of 11) 69068 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 116.167-35 chr2 54421467 54421787 + 0.5 NA Intergenic Intergenic -34700 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 135.333-16 chr11 102156733 102157065 + 0.5 NA intron (NM_001130145, intron 2 of 8) intron (NM_001130145, intron 2 of 8) 44451 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 141.167-80 chr9 104639707 104640205 + 0.5 NA Intergenic L1MA4|LINE|L1 -21752 NM_001001956 286362 Hs.553682 NM_001001956 ENSG00000136839 OR13C9 OR37L|OR9-13 olfactory receptor family 13 subfamily C member 9 protein-coding 197.333-30 chr20 40249582 40250239 + 0.5 NA Intergenic MIRb|SINE|MIR 245449 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 116-10 chr10 61745743 61746112 + 0.5 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 82966 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 126.5-93 chrX 100131695 100132090 + 0.5 NA Intergenic Tigger17a|DNA|TcMar-Tigger 278381 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 130.5-61 chr4 127332388 127332806 + 0.5 NA Intergenic Intergenic -300360 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 164.5-5 chr10 12617744 12618244 + 0.5 NA intron (NM_001351032, intron 4 of 11) intron (NM_001351032, intron 4 of 11) 35203 NR_039701 100616320 NR_039701 ENSG00000283699 MIR4481 - microRNA 4481 ncRNA 117-117 chr8 41270077 41270495 + 0.5 NA TTS (NR_049801) TTS (NR_049801) 857 NR_049801 100847068 NR_049801 ENSG00000263372 MIR548AO - microRNA 548ao ncRNA 137-104 chrX 134319825 134320315 + 0.5 NA Intergenic L1MA8|LINE|L1 -53242 NM_001015877 84295 Hs.356501 NM_032335 ENSG00000156531 PHF6 BFLS|BORJ|CENP-31 PHD finger protein 6 protein-coding 132.5-103 chr9 29109520 29109870 + 0.5 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 102604 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 125.833-32 chr18 1562073 1562359 + 0.5 NA Intergenic HERVL40-int|LTR|ERVL -202587 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 127.5-37 chr2 122835090 122835519 + 0.5 NA Intergenic L1M7|LINE|L1 238177 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 129.833-66 chr7 95182117 95182454 + 0.5 NA intron (NM_017650, intron 5 of 15) AluJo|SINE|Alu 142247 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 127.5-65 chr7 33177970 33178494 + 0.5 NA intron (NM_198428, intron 5 of 22) MER91A|DNA|hAT-Tip100 48668 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 142.167-39 chr2 117562605 117563269 + 0.5 NA Intergenic Intergenic -251754 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 185.167-2 chr10 81302039 81302446 + 0.5 NA Intergenic L1P4|LINE|L1 -572952 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 149.167-24 chr15 75899320 75899789 + 0.5 NA 3' UTR (NM_173469, exon 13 of 13) 3' UTR (NM_173469, exon 13 of 13) -4305 NM_012170 26263 Hs.591115 NM_012170 ENSG00000167196 FBXO22 FBX22|FISTC1 F-box protein 22 protein-coding 134.833-18 chr15 71727874 71728203 + 0.5 NA intron (NM_001286429, intron 2 of 11) MER102b|DNA|hAT-Charlie -36499 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 166.167-23 chr18 744372 744833 + 0.5 NA intron (NM_005433, intron 6 of 11) AluSz|SINE|Alu -31938 NR_148707 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 FUCD|RTS|TYMSAS enolase superfamily member 1 protein-coding 138.333-73 chr3 105563890 105564255 + 0.5 NA intron (NM_001243280, intron 13 of 14) L1ME2|LINE|L1 197163 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 114.333-126 chr9 33421650 33422063 + 0.5 NA Intergenic AluSz|SINE|Alu -19174 NM_001318158 364 Hs.455323 NM_001170 ENSG00000165269 AQP7 AQP7L|AQPap|GLYCQTL aquaporin 7 protein-coding 169.667-71 chr8 77074675 77075276 + 0.5 NA Intergenic Intergenic -73931 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 125.333-110 chr7 9146334 9146705 + 0.5 NA Intergenic Intergenic -487751 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 203-9 chr12 75133378 75134043 + 0.5 NA intron (NM_001260499, intron 2 of 3) intron (NM_001260499, intron 2 of 3) 76038 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 115.667-44 chr19 48024566 48025019 + 0.5 NA intron (NM_022142, intron 6 of 6) intron (NM_022142, intron 6 of 6) 19287 NM_019855 56344 Hs.117694 NM_016367 ENSG00000105507 CABP5 CABP3 calcium binding protein 5 protein-coding 134.667-113 chr8 134852082 134852423 + 0.5 NA intron (NR_125427, intron 1 of 2) intron (NR_125427, intron 1 of 2) 2317 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 170.833-30 chr3 161379892 161380295 + 0.5 NA Intergenic Intergenic -7143 NM_001320679 165679 Hs.369104 NM_145035 ENSG00000196542 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase small subunit B protein-coding 147.667-81 chr9 82606108 82606541 + 0.5 NA Intergenic MIR3|SINE|MIR 456818 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 187.667-46 chr7 24476541 24477035 + 0.5 NA Intergenic Intergenic -96664 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 130-36 chr14 72422223 72422658 + 0.5 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -94380 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 238.333-24 chr4 66323103 66323779 + 0.5 NA Intergenic Intergenic 46617 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 213.667-46 chrUn_KI270411v1 992 1802 + 0.5 NA NA ALR/Alpha|Satellite|centr NA NA 121.833-57 chr5 21114334 21114696 + 0.5 NA Intergenic MER4-int|LTR|ERV1 -344965 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 115.667-45 chr19 50974312 50974703 + 0.5 NA Intergenic Intergenic -4916 NM_002774 5653 Hs.79361 NM_002774 ENSG00000167755 KLK6 Bssp|Klk7|PRSS18|PRSS9|SP59|hK6 kallikrein related peptidase 6 protein-coding 124.167-59 chr3 148787456 148787976 + 0.5 NA Intergenic L1MEd|LINE|L1 -40095 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 178.333-40 chr4 176970596 176971041 + 0.5 NA Intergenic HERVL40-int|LTR|ERVL 95116 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 152.833-12 chr11 131445885 131446411 + 0.5 NA intron (NM_001352003, intron 1 of 8) intron (NM_001352003, intron 1 of 8) 75533 NM_001352006 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 183.5-11 chr14 28578536 28579083 + 0.5 NA Intergenic L1PA15|LINE|L1 186510 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 187.333-44 chr22 25021013 25021597 + 0.5 NA Intergenic AluJb|SINE|Alu -6669 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 130.667-65 chr4 41995368 41995745 + 0.5 NA intron (NM_006345, intron 1 of 17) L2a|LINE|L2 5026 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 129.667-94 chr7 46093288 46093585 + 0.5 NA Intergenic L1M4|LINE|L1 -172164 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 128.5-23 chr15 58282377 58282789 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 144202 NM_001320635 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 123.833-21 chr15 62802499 62802985 + 0.5 NA intron (NM_015059, intron 47 of 55) L1MA2|LINE|L1 -21215 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 119.833-61 chr3 191937340 191937715 + 0.5 NA Intergenic L1ME1|LINE|L1 -301103 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 116.833-32 chr20 48675571 48675902 + 0.5 NA intron (NM_020820, intron 14 of 39) L1MB3|LINE|L1 152263 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 121.833-67 chr6 6163878 6164266 + 0.5 NA intron (NM_000129, intron 13 of 14) L1PA13|LINE|L1 -5262 NR_049863 100847034 NR_049863 ENSG00000283616 MIR5683 - microRNA 5683 ncRNA 144.333-7 chr1 152722164 152722552 + 0.5 NA Intergenic LTR31|LTR|ERV1 2836 NM_001024679 100129271 Hs.601077 NM_001024679 ENSG00000198854 C1orf68 LEP7|XP32 chromosome 1 open reading frame 68 protein-coding 115.167-3 chr1 43015119 43015445 + 0.5 NA Intergenic MIRc|SINE|MIR 56233 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 118.5-83 chr5 105865557 105865977 + 0.5 NA Intergenic L1PA14|LINE|L1 766293 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 166.667-23 chr2 100729159 100729876 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -90622 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 167.167-6 chr1 145771090 145771652 + 0.5 NA intron (NM_014455, intron 4 of 8) MSTD|LTR|ERVL-MaLR 51872 NR_103845 11126 Hs.488237 NM_007053 ENSG00000117281 CD160 BY55|NK1|NK28 CD160 molecule protein-coding 146-11 chr11 124082778 124083345 + 0.5 NA Intergenic Intergenic -32343 NM_014622 4013 Hs.152944 NM_014622 ENSG00000110002 VWA5A BCSC-1|BCSC1|LOH11CR2A von Willebrand factor A domain containing 5A protein-coding 121.167-43 chr2 133670667 133670932 + 0.5 NA Intergenic Intergenic -102336 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 150.333-72 chr4 31785142 31785601 + 0.5 NA Intergenic Intergenic -212008 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 124.5-46 chr3 95091174 95091455 + 0.5 NA Intergenic Intergenic 153051 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 130.833-35 chr20 4770171 4770530 + 0.5 NA Intergenic Intergenic -29682 NR_024267 149830 Hs.126516 NM_177549 ENSG00000180259 PRNT M8 prion locus lncRNA, testis expressed ncRNA 131.5-81 chr8 24482079 24482445 + 0.5 NA exon (NM_003817, exon 9 of 22) exon (NM_003817, exon 9 of 22) 32606 NR_125809 101929315 Hs.125562 NR_125809 ENSG00000253643 LOC101929315 - uncharacterized LOC101929315 ncRNA 116.5-40 chr2 133182191 133182605 + 0.5 NA intron (NM_207481, intron 5 of 17) L1MD1|LINE|L1 -83797 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 128.333-16 chr10 75083772 75084194 + 0.5 NA Intergenic Intergenic 15503 NM_001363514 51207 Hs.178170 NM_016364 ENSG00000079393 DUSP13 BEDP|DUSP13A|DUSP13B|MDSP|SKRP4|TMDP dual specificity phosphatase 13 protein-coding 186.833-25 chr2 67651122 67651664 + 0.5 NA Intergenic Intergenic 174169 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 120.5-12 chr10 69987218 69987620 + 0.5 NA Intergenic L1M5|LINE|L1 -65427 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 116.667-42 chr16 66554281 66554661 + 0.5 NA intron (NM_001202509, intron 1 of 2) L2a|LINE|L2 1895 NM_001204098 100529251 Hs.698621 NM_001202509 ENSG00000254788 CKLF-CMTM1 - CKLF-CMTM1 readthrough protein-coding 169-63 chr9 90238669 90239110 + 0.5 NA Intergenic L3|LINE|CR1 194600 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 136.167-18 chr12 126850366 126850869 + 0.5 NA Intergenic Intergenic 24073 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 138.333-89 chr5 55958971 55959440 + 0.5 NA intron (NR_157112, intron 8 of 17) intron (NR_157112, intron 8 of 17) 35758 NR_157112 3572 Hs.532082 NM_002184 ENSG00000134352 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 181.833-5 chr1 222410007 222410569 + 0.5 NA Intergenic L1PA7|LINE|L1 137816 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 165.333-72 chr9 31479707 31480152 + 0.5 NA Intergenic Intergenic -98439 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 185.833-37 chr9 25631008 25631454 + 0.5 NA Intergenic MIR|SINE|MIR 47627 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 178.333-33 chr3 28254640 28255080 + 0.5 NA intron (NM_001331189, intron 2 of 4) intron (NM_001331189, intron 2 of 4) 13241 NM_001331189 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 137.5-13 chr10 36460611 36461017 + 0.5 NA Intergenic AluSx3|SINE|Alu -665043 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 157.667-52 chr4 42893022 42893622 + 0.5 NA promoter-TSS (NM_001080476) promoter-TSS (NM_001080476) 56 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 151.667-30 chr18 13602949 13603353 + 0.5 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -7963 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 141.833-44 chr7 86787499 86788002 + 0.5 NA intron (NM_001363522, intron 3 of 4) intron (NM_001363522, intron 3 of 4) 143836 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 143.333-98 chr9 109030874 109031160 + 0.5 NA intron (NM_032012, intron 17 of 17) intron (NM_032012, intron 17 of 17) 15281 NR_029506 407036 NR_029506 ENSG00000207698 MIR32 MIRN32|hsa-mir-32|miR-32|miRNA32 microRNA 32 ncRNA 168.5-72 chr9 88326189 88326688 + 0.5 NA Intergenic L1ME3G|LINE|L1 -62006 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 122.5-105 chrX 23056090 23056473 + 0.5 NA intron (NR_073010, intron 3 of 11) Tigger1|DNA|TcMar-Tigger 56321 NM_182699 168400 Hs.434416 NM_182699 ENSG00000184735 DDX53 CAGE|CT26 DEAD-box helicase 53 protein-coding 114.5-88 chr8 11152748 11153010 + 0.5 NA intron (NR_138154, intron 1 of 2) intron (NR_138154, intron 1 of 2) 48487 NR_138152 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 138.5-6 chr1 97402341 97402753 + 0.5 NA intron (NM_000110, intron 14 of 22) L1MC1|LINE|L1 306624 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 124.833-49 chr2 201065346 201065750 + 0.5 NA intron (NM_001321626, intron 1 of 12) MIR|SINE|MIR 6123 NM_001321621 285172 Hs.24701 NM_173822 ENSG00000155744 FAM126B HYCC2 family with sequence similarity 126 member B protein-coding 120.833-64 chr7 65329096 65329630 + 0.5 NA Intergenic L1MB2|LINE|L1 -44436 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 197.833-6 chr11 88016517 88016958 + 0.5 NA Intergenic Intergenic 158706 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 115.333-71 chr3 152262709 152263145 + 0.5 NA non-coding (NR_027037, exon 2 of 2) non-coding (NR_027037, exon 2 of 2) -6002 NM_207292 4154 Hs.201858 NM_021038 ENSG00000152601 MBNL1 EXP|MBNL muscleblind like splicing regulator 1 protein-coding 141-41 chr2 52957175 52957471 + 0.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR -254708 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 119.167-20 chr13 97554368 97554716 + 0.5 NA Intergenic Intergenic 120373 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 217.667-10 chr14 51143691 51144232 + 0.5 NA Intergenic Intergenic -48257 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 139.333-82 chr5 138406895 138407497 + 0.5 NA intron (NM_016604, intron 11 of 23) AluSx|SINE|Alu -31861 NR_073448 51308 Hs.416090 NM_016606 ENSG00000132563 REEP2 C5orf19|SGC32445|SPG72|Yip2d receptor accessory protein 2 protein-coding 113.333-43 chr16 21100967 21101430 + 0.5 NA intron (NM_001347886, intron 16 of 61) MER47A|DNA|TcMar-Tigger 49648 NM_001347886 55567 Hs.526500 NM_017539 ENSG00000158486 DNAH3 DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3 dynein axonemal heavy chain 3 protein-coding 171.167-43 chr4 176734668 176735188 + 0.5 NA intron (NM_005429, intron 1 of 6) intron (NM_005429, intron 1 of 6) 57994 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 149.333-97 chr8 104335605 104336124 + 0.5 NA Intergenic L1MC1|LINE|L1 -3932 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 130-80 chr5 20542883 20543374 + 0.5 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 32585 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 192.667-46 chr6 54924036 54924694 + 0.5 NA intron (NM_001010872, intron 2 of 4) L2a|LINE|L2 77594 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 151.5-45 chr3 26985100 26985439 + 0.5 NA Intergenic Intergenic 231254 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 145-86 chr7 117560555 117560966 + 0.5 NA non-coding (NR_149084, exon 2 of 3) non-coding (NR_149084, exon 2 of 3) 3916 NR_149084 111082987 Hs.583149 NR_149084 ENSG00000232661 CFTR-AS1 BGas CFTR antisense RNA 1 ncRNA 152.833-56 chr5 92773495 92773921 + 0.5 NA Intergenic Intergenic 797635 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 139.167-15 chr12 54552776 54553163 + 0.5 NA intron (NM_001288769, intron 1 of 14) intron (NM_001288769, intron 1 of 14) 2889 NM_001288769 5153 Hs.530871 NM_000924 ENSG00000123360 PDE1B HEL-S-79p|PDE1B1|PDES1B phosphodiesterase 1B protein-coding 140.333-34 chr2 63646029 63646420 + 0.5 NA Intergenic L1MA2|LINE|L1 57073 NM_001199111 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 180.667-36 chr2 109410721 109411357 + 0.5 NA intron (NM_001099289, intron 4 of 9) intron (NM_001099289, intron 4 of 9) -97414 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 156.5-42 chr18 46581743 46582235 + 0.5 NA intron (NM_144612, intron 12 of 39) L1MB7|LINE|L1 -22677 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 126.5-85 chr8 93257986 93258356 + 0.5 NA Intergenic Intergenic -91321 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 157 chr1 33026795 33027241 + 0.5 NA intron (NR_134976, intron 1 of 5) AluSx|SINE|Alu 9865 NM_001625 204 Hs.470907 NM_001625 ENSG00000004455 AK2 ADK2 adenylate kinase 2 protein-coding 163.5-45 chr22 35508319 35508793 + 0.5 NA Intergenic FLAM_C|SINE|Alu -31938 NM_001366725 23551 Hs.474711 NM_014310 ENSG00000100302 RASD2 Rhes|TEM2 RASD family member 2 protein-coding 152.5-52 chr5 94119473 94120065 + 0.5 NA Intergenic L2|LINE|L2 -8070 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 124.833-17 chr12 33007209 33007625 + 0.5 NA Intergenic Intergenic -110571 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 185-21 chr17 45267136 45267646 + 0.5 NA intron (NR_110324, intron 2 of 2) intron (NR_110324, intron 2 of 2) -5297 NM_152343 124783 Hs.412719 NM_152343 ENSG00000184361 SPATA32 AEP2|C17orf46|TEX34|VAD1.2 spermatogenesis associated 32 protein-coding 145.167-33 chr2 199671230 199671631 + 0.5 NA Intergenic L2c|LINE|L2 63362 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 144.667-51 chr2 54257001 54257506 + 0.5 NA intron (NM_138448, intron 3 of 3) L1M5|LINE|L1 -1024 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 216.333-16 chr17 63034376 63035031 + 0.5 NA intron (NM_025185, intron 2 of 25) Tigger1|DNA|TcMar-Tigger 68468 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 114.5-73 chr5 67808253 67808636 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie 15231 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 129.333-21 chr12 23117042 23117463 + 0.5 NA Intergenic Intergenic -58384 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 128.833-25 chr13 66768763 66769267 + 0.5 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -56154 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 122.5-86 chr6 161922588 161922912 + 0.5 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 451773 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 119.333-39 chr18 2755954 2756246 + 0.5 NA intron (NM_015295, intron 34 of 47) L1ME3B|LINE|L1 -90906 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 129.833-32 chr18 4673682 4674013 + 0.5 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -218540 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 158.667-72 chr6 26630223 26630685 + 0.5 NA Intergenic AluSp|SINE|Alu 29292 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 152.333-70 chr9 36741388 36741945 + 0.5 NA Intergenic Intergenic 81933 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 149.333-57 chr2 194870380 194870795 + 0.5 NA Intergenic MIR|SINE|MIR 139992 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 199.833-7 chr12 16588498 16588976 + 0.5 NA intron (NR_045014, intron 2 of 3) intron (NR_045014, intron 2 of 3) 16642 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 133.833-16 chr11 75944689 75945027 + 0.5 NA intron (NM_003369, intron 6 of 14) L3|LINE|CR1 129648 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 113.5-81 chr7 51564116 51564600 + 0.5 NA Intergenic LTR34|LTR|ERV1 -171102 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 173.667-66 chr8 89775016 89775675 + 0.5 NA intron (NM_003821, intron 6 of 10) AluJb|SINE|Alu 17529 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 133.5-59 chr5 110445387 110445957 + 0.5 NA intron (NM_001039763, intron 12 of 13) MLT1F2|LTR|ERVL-MaLR 68243 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 143.167-20 chr15 45790695 45791048 + 0.5 NA intron (NR_135680, intron 1 of 4) L2b|LINE|L2 85676 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 139.667-72 chr5 9321641 9322183 + 0.5 NA intron (NM_003966, intron 4 of 22) intron (NM_003966, intron 4 of 22) -189421 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 127.5-41 chr3 4522752 4523073 + 0.5 NA intron (NM_001168272, intron 4 of 60) MER5B|DNA|hAT-Charlie 29564 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 119.5-94 chr7 22249564 22250040 + 0.5 NA intron (NM_012294, intron 7 of 25) MER5B|DNA|hAT-Charlie -54992 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 178.667-59 chr6 117571404 117571855 + 0.5 NA intron (NM_001017408, intron 4 of 7) L2|LINE|L2 30882 NM_020399 57120 Hs.191539 NM_020399 ENSG00000047932 GOPC CAL|FIG|GOPC1|PIST|dJ94G16.2 golgi associated PDZ and coiled-coil motif containing protein-coding 158.167-26 chr2 150143341 150143809 + 0.5 NA Intergenic Intergenic 113432 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 121.5-61 chr20 13516915 13517409 + 0.5 NA intron (NR_136631, intron 10 of 13) intron (NR_136631, intron 10 of 13) 121770 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 146.333-8 chr10 43742737 43743258 + 0.5 NA Intergenic L2a|LINE|L2 35828 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 126.167-63 chr4 39414214 39414615 + 0.5 NA intron (NM_175737, intron 1 of 4) Charlie21a|DNA|hAT-Charlie 2504 NR_049857 100847065 NR_049857 ENSG00000264621 MIR5591 - microRNA 5591 ncRNA 122-73 chr6 13550942 13551255 + 0.5 NA Intergenic HAL1|LINE|L1 -23431 NM_001193267 23408 Hs.567431 NM_012241 ENSG00000124523 SIRT5 SIR2L5 sirtuin 5 protein-coding 150.333-13 chr10 64600699 64601351 + 0.5 NA Intergenic Intergenic -224503 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 122-61 chr4 64421638 64422080 + 0.5 NA Intergenic Intergenic -12399 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 117.333-99 chr7 20701721 20702039 + 0.5 NA intron (NM_178559, intron 10 of 18) intron (NM_178559, intron 10 of 18) 54550 NM_001163993 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 134.5-7 chr1 118555990 118556495 + 0.5 NA Intergenic Intergenic -371014 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 129.333-85 chr6 158542648 158543187 + 0.5 NA intron (NM_020823, intron 1 of 16) AluSc8|SINE|Alu 6481 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 148.5-72 chr8 137241728 137242069 + 0.5 NA Intergenic AluSc8|SINE|Alu 171690 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 137.167-12 chr11 130354644 130355186 + 0.5 NA intron (NR_148980, intron 1 of 6) L1MB4|LINE|L1 39922 NR_148980 646383 Hs.155288 NM_001039787 ENSG00000175773 ZBTB44-DT - ZBTB44 divergent transcript ncRNA 181-11 chr11 10365619 10366163 + 0.5 NA intron (NR_103765, intron 2 of 3) L1M5|LINE|L1 57578 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 191.333-37 chr7 32602563 32603031 + 0.5 NA intron (NR_036680, intron 12 of 16) MLT1H1|LTR|ERVL-MaLR 107308 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 149.667-80 chr9 87359395 87359957 + 0.5 NA Intergenic L1MA3|LINE|L1 -137552 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 137.333-14 chr11 72113852 72114237 + 0.5 NA Intergenic L2a|LINE|L2 -1268 NM_001278488 25906 Hs.38044 NM_014042 ENSG00000110200 ANAPC15 APC15|C11orf51|HSPC020 anaphase promoting complex subunit 15 protein-coding 145.333-73 chr6 72023016 72023419 + 0.5 NA intron (NM_001350411, intron 2 of 3) intron (NM_001350411, intron 2 of 3) 136514 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 132.333-39 chr14 91195365 91195811 + 0.5 NA intron (NM_001102368, intron 9 of 13) MIR|SINE|MIR 49116 NM_001177676 8111 Hs.8882 NM_003485 ENSG00000119714 GPR68 AI2A6|GPR12A|OGR1 G protein-coupled receptor 68 protein-coding 113.667-6 chr1 155500557 155500984 + 0.5 NA intron (NM_018489, intron 2 of 27) AluSz6|SINE|Alu -61272 NR_147964 645676 Hs.568693 NR_027023 ENSG00000235919 ASH1L-AS1 - ASH1L antisense RNA 1 ncRNA 125.833-99 chrX 46767736 46768276 + 0.5 NA Intergenic LTR33A|LTR|ERVL -8888 NM_032591 84679 Hs.91389 NM_032591 ENSG00000065923 SLC9A7 MRX108|NHE-7|NHE7|SLC9A6 solute carrier family 9 member A7 protein-coding 123.667-104 chr7 124413727 124414142 + 0.5 NA Intergenic Intergenic -61838 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 131.5-12 chr11 36769363 36769725 + 0.5 NA Intergenic Intergenic -171265 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 114.5 chr1 33318153 33318458 + 0.5 NA intron (NM_001080438, intron 1 of 4) intron (NM_001080438, intron 1 of 4) 2793 NM_001080438 127550 NM_001080438 ENSG00000184389 A3GALT2 A3GALT2P|IGB3S|IGBS3S alpha 1,3-galactosyltransferase 2 protein-coding 153-58 chr9 21756746 21757135 + 0.5 NA Intergenic MER33|DNA|hAT-Charlie -45696 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 162.167-8 chr10 108777310 108777654 + 0.5 NA Intergenic L1PA11|LINE|L1 -708189 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 120.667-66 chr2 199584257 199584587 + 0.5 NA Intergenic Intergenic -23646 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 173.5-41 chr4 58091408 58092007 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 444621 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 134.333-71 chr20 49012678 49013084 + 0.5 NA intron (NM_006420, intron 28 of 38) MIR|SINE|MIR 33175 NR_110624 102723483 Hs.209000 NR_110624 ENSG00000227431 CSE1L-AS1 - CSE1L antisense RNA 1 ncRNA 175-31 chr2 134547813 134548508 + 0.5 NA intron (NM_030923, intron 4 of 7) MER33|DNA|hAT-Charlie 170840 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 161.333-42 chr2 147661644 147662145 + 0.5 NA Intergenic MER5A1|DNA|hAT-Charlie -182623 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 131.167-41 chr2 88000177 88000554 + 0.5 NA Intergenic Intergenic -14575 NM_001024457 400966 Hs.728970 NM_001024457 ENSG00000187627 RGPD1 RGP1|RGPD2|RanBP2L2 RANBP2 like and GRIP domain containing 1 protein-coding 125.833-88 chr8 80334372 80334717 + 0.5 NA Intergenic MamTip3|DNA|hAT-Tip100 93155 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 181.333-39 chr3 131472682 131473286 + 0.5 NA intron (NM_007208, intron 6 of 9) L1MA6|LINE|L1 6249 NR_002985 677836 Hs.735762 NR_002985 SNORA58 ACA58|SNORA58B small nucleolar RNA, H/ACA box 58 snoRNA 184.5-29 chr3 22205023 22205519 + 0.5 NA Intergenic L1MA3|LINE|L1 248132 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 167.667-22 chr13 69010868 69011359 + 0.5 NA Intergenic Intergenic -125788 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 278.333-7 chr15 60547144 60548142 + 0.5 NA intron (NM_134261, intron 2 of 10) MARNA|DNA|TcMar-Mariner 44883 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 113.5-18 chr11 57758193 57758480 + 0.5 NA intron (NR_037646, intron 2 of 20) intron (NR_037646, intron 2 of 20) -3466 NM_001085460 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 142.167-11 chr10 58918645 58919208 + 0.5 NA Intergenic Intergenic -80592 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 114.167-78 chr5 23388800 23389090 + 0.5 NA Intergenic Intergenic -118664 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 141.667-95 chr6 76040095 76040604 + 0.5 NA intron (NM_001282368, intron 1 of 15) intron (NM_001282368, intron 1 of 15) 32313 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 123.5-51 chr2 232635445 232635982 + 0.5 NA intron (NM_025202, intron 1 of 3) AluSx|SINE|Alu 2109 NM_001308395 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 134.333-74 chr3 37827980 37828459 + 0.5 NA intron (NR_110532, intron 3 of 5) L1MEd|LINE|L1 33561 NR_110532 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 171.333-65 chr8 122984156 122984533 + 0.5 NA Intergenic Intergenic 41428 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 119.333-20 chr12 2513350 2513844 + 0.5 NA intron (NM_199460, intron 9 of 49).2 intron (NM_199460, intron 9 of 49).2 158623 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 119.333-93 chr6 41233442 41233827 + 0.5 NA intron (NM_198153, intron 4 of 5) L1MEh|LINE|L1 5285 NM_198153 285852 Hs.434181 NM_198153 ENSG00000188056 TREML4 TLT-4|TLT4 triggering receptor expressed on myeloid cells like 4 protein-coding 113.167-6 chr10 11983373 11983898 + 0.5 NA intron (NM_080599, intron 8 of 21) AluY|SINE|Alu 59174 NM_015542 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense mediated mRNA decay protein-coding 150.333-57 chr2 112619202 112619618 + 0.5 NA Intergenic Intergenic 24770 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 126.5-51 chr20 52455812 52456183 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -164841 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 131.333-108 chr9 73523193 73523826 + 0.5 NA Intergenic L1MB7|LINE|L1 371644 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 150.667-100 chrX 46013732 46014232 + 0.5 NA Intergenic L1M5|LINE|L1 -162492 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 126.833-46 chr3 109882441 109882853 + 0.5 NA Intergenic MIR|SINE|MIR 279819 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 114.5-2 chr1 77913259 77913587 + 0.5 NA intron (NM_001172309, intron 1 of 11) AluSx1|SINE|Alu -23884 NR_103535 374987 Hs.632414 NM_199343 ENSG00000235927 NEXN-AS1 C1orf118 NEXN antisense RNA 1 ncRNA 190.667-24 chr2 190665032 190665729 + 0.5 NA intron (NM_001321314, intron 1 of 6) intron (NM_001321314, intron 1 of 6) 6222 NM_001321315 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 161.167-29 chr2 51847301 51847864 + 0.5 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -523066 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 120.667-117 chr8 108614031 108614367 + 0.5 NA intron (NR_136411, intron 2 of 3) intron (NR_136411, intron 2 of 3) 170575 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 164.5-25 chr16 66803717 66804268 + 0.5 NA intron (NM_001018159, intron 20 of 20) L2a|LINE|L2 -2372 NM_001136505 283847 Hs.376505 NM_173616 ENSG00000249961 TERB1 CCDC79 telomere repeat binding bouquet formation protein 1 protein-coding 121.333-52 chr2 116312094 116312411 + 0.5 NA Intergenic Intergenic 968437 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 139.667-86 chr7 64772308 64772670 + 0.5 NA Intergenic AluSc8|SINE|Alu -21939 NM_001367574 7697 Hs.184080 NM_006524 ENSG00000197008 ZNF138 pHZ-32 zinc finger protein 138 protein-coding 191.833-15 chr20 10691029 10691561 + 0.5 NA Intergenic Intergenic -17296 NM_000214 182 Hs.224012 NM_000214 ENSG00000101384 JAG1 AGS|AGS1|AHD|AWS|CD339|DCHE|HJ1|JAGL1 jagged canonical Notch ligand 1 protein-coding 151.667-88 chr8 126336101 126336533 + 0.5 NA Intergenic L1PB2|LINE|L1 10822 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 113.833-90 chr8 122895947 122896207 + 0.5 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 114422 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 120-105 chr8 86437255 86437682 + 0.5 NA intron (NM_007013, intron 16 of 24) intron (NM_007013, intron 16 of 24) 71218 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 161.167-57 chr8 112491332 112491747 + 0.5 NA intron (NM_001363185, intron 29 of 66) AluSz6|SINE|Alu -151954 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 159.333-69 chr7 53183400 53183921 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 148027 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 128.833-18 chr10 76361655 76361941 + 0.5 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -526246 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 135.667-8 chr1 210743717 210744088 + 0.5 NA intron (NM_002238, intron 10 of 10) LTR105_Mam|LTR|ERVL 389472 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 177.167-36 chr5 40757636 40758299 + 0.5 NA Intergenic MLT1F|LTR|ERVL-MaLR -2006 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 137.667-48 chr2 15540961 15541489 + 0.5 NA intron (NR_052013, intron 6 of 50) L2c|LINE|L2 20109 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 149.5-39 chr21 30433453 30433846 + 0.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 3395 NM_181600 284827 Hs.553677 NM_181600 ENSG00000186971 KRTAP13-4 KAP13.4 keratin associated protein 13-4 protein-coding 115.667-77 chr3 153442588 153442819 + 0.5 NA intron (NR_146713, intron 5 of 6) L1M5|LINE|L1 -41792 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 179.5-32 chr7 47272796 47273365 + 0.5 NA Intergenic L1MDa|LINE|L1 191723 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 150.833-41 chr5 87880816 87881414 + 0.5 NA Intergenic Intergenic 219073 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 153.833-64 chr8 123999954 124000360 + 0.5 NA intron (NM_001039112, intron 12 of 40) L1M1|LINE|L1 40625 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 133.167-29 chr2 12334699 12335042 + 0.5 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 135740 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 116-63 chr3 157792761 157793146 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 249609 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 154.333-78 chrX 122168866 122169469 + 0.5 NA Intergenic L1PB2|LINE|L1 798195 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 127.5-55 chr5 67921162 67921655 + 0.5 NA Intergenic Intergenic 128195 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 142.833-22 chr15 96914272 96914679 + 0.5 NA Intergenic L2b|LINE|L2 131040 NR_158223 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 147.833-8 chr10 92561335 92561795 + 0.5 NA intron (NM_001322795, intron 1 of 25) AluY|SINE|Alu 11941 NM_001322796 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 134.667-90 chr5 154691889 154692224 + 0.5 NA intron (NM_001367715, intron 1 of 17) AluSx|SINE|Alu 6280 NR_031638 100302284 NR_031638 ENSG00000221552 MIR1303 MIRN1303|hsa-mir-1303 microRNA 1303 ncRNA 177.333-69 chr9 72709804 72710318 + 0.5 NA intron (NM_138691, intron 8 of 23) L1PB1|LINE|L1 164048 NR_121181 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 113.5-83 chr7 71743722 71744151 + 0.5 NA Intergenic L1PA16|LINE|L1 -436166 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 167.833-14 chr14 32169116 32169635 + 0.5 NA Intergenic Intergenic -32670 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 190.167-43 chr7 69553393 69553991 + 0.5 NA Intergenic Intergenic 43932 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 121-64 chr4 87145218 87145779 + 0.5 NA Intergenic Intergenic 74770 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 184.667-24 chr17 28489529 28489962 + 0.5 NA intron (NM_001346683, intron 3 of 12) MER5A|DNA|hAT-Charlie 16101 NM_001346684 9058 Hs.102307 NM_003984 ENSG00000007216 SLC13A2 NADC1|NaCT|NaDC-1|SDCT1 solute carrier family 13 member 2 protein-coding 243.667 chr1 11025411 11026152 + 0.5 NA TTS (NM_007375) TTS (NM_007375) 13159 NM_007375 23435 Hs.300624 NM_007375 ENSG00000120948 TARDBP ALS10|TDP-43 TAR DNA binding protein protein-coding 211.833-2 chr1 95321837 95322455 + 0.5 NA Intergenic Intergenic -3883 NR_135588 100996630 Hs.662270 NR_135588 ENSG00000228504 LINC01760 - long intergenic non-protein coding RNA 1760 ncRNA 126.167 chr1 53890152 53890598 + 0.5 NA promoter-TSS (NR_036640) promoter-TSS (NR_036640) -578 NM_018982 54432 Hs.11923 NM_018982 ENSG00000058799 YIPF1 DJ167A19.1|FinGER1 Yip1 domain family member 1 protein-coding 153.167-28 chr2 170096822 170097320 + 0.5 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -81076 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 157.333-82 chrX 66643080 66643716 + 0.5 NA Intergenic L2a|LINE|L2 -4100 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 128.167-57 chr3 187076667 187076975 + 0.5 NA 3' UTR (NM_003032, exon 7 of 7) 3' UTR (NM_003032, exon 7 of 7) 38103 NM_001353916 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 207.167 chr1 25442046 25442855 + 0.5 NA intron (NM_018202, intron 1 of 10) intron (NM_018202, intron 1 of 10) 11553 NM_018202 55219 Hs.189782 NM_018202 ENSG00000204178 MACO1 MACOILIN|TMEM57 macoilin 1 protein-coding 183.833-43 chr8 48808545 48809065 + 0.5 NA Intergenic L1MDa|LINE|L1 -73494 NM_001142857 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 195.333-47 chr5 104858569 104858984 + 0.5 NA Intergenic GA-rich|Low_complexity|Low_complexity -240698 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 143.333-84 chr7 111832836 111833213 + 0.5 NA intron (NM_001363540, intron 26 of 52) intron (NM_001363540, intron 26 of 52) 24519 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 176.167-21 chr2 114389238 114389692 + 0.5 NA Intergenic Intergenic -53176 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 116.667-65 chr21 30882282 30882796 + 0.5 NA promoter-TSS (NM_175858) promoter-TSS (NM_175858) -959 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 128.333-103 chr5 163363368 163363749 + 0.5 NA Intergenic Intergenic -74013 NM_001364023 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 142.5-24 chr14 71629619 71630155 + 0.5 NA intron (NM_001354286, intron 8 of 24) L4_C_Mam|LINE|RTE-X 43589 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 138.833-16 chr12 118513548 118513881 + 0.5 NA Intergenic Intergenic 137159 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 149.5-41 chr22 47055999 47056473 + 0.5 NA intron (NM_001284305, intron 11 of 12) intron (NM_001284305, intron 11 of 12) -140194 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 173.833-11 chr10 118468665 118469039 + 0.5 NA Intergenic L2c|LINE|L2 111744 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 115.667-85 chr4 73656235 73656629 + 0.5 NA Intergenic L1ME1|LINE|L1 -35801 NM_201431 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 116.667-58 chr2 107798376 107798841 + 0.5 NA intron (NR_126370, intron 2 of 4) intron (NR_126370, intron 2 of 4) 28161 NR_024439 729121 Hs.386155 NR_024439 ENSG00000230651 RGPD4-AS1 - RGPD4 antisense RNA 1 (head to head) ncRNA 113.833-27 chr17 58119233 58119633 + 0.5 NA Intergenic Intergenic -35721 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 144-70 chr7 93455001 93455458 + 0.5 NA intron (NM_001164738, intron 7 of 12) intron (NM_001164738, intron 7 of 12) 27626 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 192.333-13 chr16 56950663 56951306 + 0.5 NA Intergenic L2a|LINE|L2 -10966 NM_001286085 1071 Hs.89538 NM_000078 ENSG00000087237 CETP BPIFF|HDLCQ10 cholesteryl ester transfer protein protein-coding 123.333-106 chr8 78401761 78402276 + 0.5 NA Intergenic Intergenic -114322 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 223.167-7 chr5 43306256 43306757 + 0.5 NA intron (NM_002130, intron 1 of 9) Tigger4a|DNA|TcMar-Tigger 6675 NM_001364188 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 183.833-37 chr7 40003366 40004056 + 0.5 NA intron (NM_003718, intron 5 of 13) L2a|LINE|L2 53351 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 129.833-40 chr22 34899218 34899837 + 0.5 NA intron (NR_138042, intron 2 of 4) intron (NR_138042, intron 2 of 4) 98389 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 114.333-58 chr2 7457941 7458344 + 0.5 NA Intergenic L1ME4c|LINE|L1 36881 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 118.833-31 chr17 79655513 79655821 + 0.5 NA Intergenic MER46C|DNA|TcMar-Tigger -44616 NM_001350451 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 114.167-48 chr2 134958119 134958597 + 0.5 NA non-coding (NR_037649, exon 11 of 11) non-coding (NR_037649, exon 11 of 11) 39536 NM_058241 905 Hs.744115 NM_001241 ENSG00000082258 CCNT2 CYCT2 cyclin T2 protein-coding 132.667-55 chr2 214577650 214577962 + 0.5 NA non-coding (NR_159945, exon 5 of 5) non-coding (NR_159945, exon 5 of 5) 67624 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 143.167-27 chr2 13886974 13887428 + 0.5 NA Intergenic L1MA3|LINE|L1 513757 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 227.5-28 chr5 150491749 150492283 + 0.5 NA Intergenic Intergenic -5763 NM_001301063 3340 Hs.222055 NM_001543 ENSG00000070614 NDST1 HSST|MRT46|NST1 N-deacetylase and N-sulfotransferase 1 protein-coding 164.167-27 chr19 27572809 27573407 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -220323 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 120.5-83 chr8 56292609 56292962 + 0.5 NA Intergenic L1MCb|LINE|L1 27991 NM_138969 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 173.333-13 chr11 114593327 114594084 + 0.5 NA intron (NM_017678, intron 2 of 5) L1MA3|LINE|L1 2081 NM_001077639 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 154.333-28 chr16 6881653 6882068 + 0.5 NA intron (NM_001142334, intron 1 of 13) MIRb|SINE|MIR 108051 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 145.5-43 chr22 34412745 34413346 + 0.5 NA Intergenic L1MA9|LINE|L1 -490157 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 120.5-6 chr1 212895539 212895797 + 0.5 NA 3' UTR (NM_014053, exon 10 of 10) 3' UTR (NM_014053, exon 10 of 10) 37393 NM_014053 28982 Hs.7055 NM_014053 ENSG00000162769 FLVCR1 AXPC1|FLVCR|MFSD7B|PCA|PCARP|SLC49A1 feline leukemia virus subgroup C cellular receptor 1 protein-coding 115.333-101 chr7 67677419 67677892 + 0.5 NA Intergenic AluSx|SINE|Alu 341679 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 114.667-56 chr2 121395444 121395927 + 0.5 NA intron (NM_015282, intron 29 of 38) intron (NM_015282, intron 29 of 38) -110483 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 156.333-15 chr11 27193699 27194088 + 0.5 NA intron (NR_125767, intron 2 of 4) intron (NR_125767, intron 2 of 4) 24875 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 126.333-10 chr10 24186131 24186534 + 0.5 NA intron (NM_001098500, intron 2 of 18) L1M7|LINE|L1 -22459 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 183-39 chr4 23992354 23993006 + 0.5 NA intron (NM_001330752, intron 2 of 13) intron (NM_001330752, intron 2 of 13) -102633 NM_013261 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 136.333-90 chr7 46812774 46813337 + 0.5 NA Intergenic Intergenic -115933 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 194.333-35 chr6 133735997 133736611 + 0.5 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -84843 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 164.167-4 chr10 2502458 2502819 + 0.5 NA Intergenic Intergenic -1176 NR_136146 105376351 Hs.343482 NR_136146 LINC02645 - long intergenic non-protein coding RNA 2645 ncRNA 142-15 chr10 43428413 43428952 + 0.5 NA Intergenic AluSz|SINE|Alu -8166 NM_001355446 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 130.167-50 chr3 130416069 130416476 + 0.5 NA intron (NM_001278298, intron 23 of 40) intron (NM_001278298, intron 23 of 40) 70756 NM_153264 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 122.167-50 chr4 62111617 62112071 + 0.5 NA intron (NR_110595, intron 6 of 7) L1MEd|LINE|L1 49921 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 154-53 chr3 112375101 112375535 + 0.5 NA Intergenic L2|LINE|L2 42162 NM_001365851 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 145.833-36 chr18 77799391 77799800 + 0.5 NA Intergenic L1MDa|LINE|L1 194132 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 175-11 chr10 75215353 75215904 + 0.5 NA intron (NM_001184783, intron 6 of 11) AluY|SINE|Alu 5474 NM_001324088 7417 Hs.355927 NM_003375 ENSG00000165637 VDAC2 POR voltage dependent anion channel 2 protein-coding 131.833-63 chr7 16651837 16652239 + 0.5 NA intron (NM_001362718, intron 1 of 10) intron (NM_001362718, intron 1 of 10) 5857 NM_014038 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 153.5-27 chr18 3158586 3159021 + 0.5 NA intron (NM_019856, intron 10 of 36) AluJb|SINE|Alu 61165 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 196.5-8 chr11 10201341 10201830 + 0.5 NA intron (NM_030962, intron 1 of 39) intron (NM_030962, intron 1 of 39) 92622 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 152.333-74 chrUn_GL000216v2 55940 56423 + 0.5 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 154.167 chr1 31437988 31438309 + 0.5 NA Intergenic AluSg|SINE|Alu 24335 NM_018565 347735 Hs.270655 NM_018565 ENSG00000168528 SERINC2 FKSG84|PRO0899|TDE2|TDE2L serine incorporator 2 protein-coding 119.167-94 chr8 62613361 62613817 + 0.5 NA intron (NM_001304533, intron 3 of 6) L1MA1|LINE|L1 -364272 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 170.5-53 chr5 35422214 35422673 + 0.5 NA Intergenic L1MA9|LINE|L1 -191956 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 146.5-35 chr16 69904738 69905086 + 0.5 NA intron (NM_001270453, intron 5 of 20) MER57D|LTR|ERV1 -20127 NM_199424 11060 Hs.408458 NM_007014 ENSG00000198373 WWP2 AIP2|WWp2-like WW domain containing E3 ubiquitin protein ligase 2 protein-coding 152.333-18 chr14 69549375 69549690 + 0.5 NA Intergenic Intergenic 25339 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 168.5-23 chr17 35253358 35253880 + 0.5 NA intron (NM_144975, intron 1 of 4) AluJo|SINE|Alu 10547 NM_144975 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 178-26 chr20 40607209 40607629 + 0.5 NA Intergenic LTR85a|LTR|Gypsy? 81817 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 187.5-28 chr3 80661310 80661905 + 0.5 NA Intergenic L1PB2|LINE|L1 -103290 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 148.667-31 chr19 12704614 12704957 + 0.5 NA intron (NM_013433, intron 17 of 24) AluSx1|SINE|Alu -1114 NR_132756 106633804 NR_132756 SNORD135 ZL2 small nucleolar RNA, C/D box 135 snoRNA 183.667-63 chr5 52175659 52176439 + 0.5 NA Intergenic Intergenic 168018 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 128 chr1 22842533 22843015 + 0.5 NA intron (NM_004442, intron 3 of 15) L2b|LINE|L2 20452 NR_036214 100422914 NR_036214 ENSG00000264014 MIR4253 - microRNA 4253 ncRNA 172.833-23 chr17 57408568 57409105 + 0.5 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 114761 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 126-40 chr2 31007146 31007535 + 0.5 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 122300 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 155.667-44 chr20 41122657 41123038 + 0.5 NA intron (NM_003286, intron 20 of 20) MIR|SINE|MIR -14696 NM_002660 5335 Hs.268177 NM_002660 ENSG00000124181 PLCG1 NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1 phospholipase C gamma 1 protein-coding 122.833-21 chr13 105129236 105129640 + 0.5 NA Intergenic Intergenic -336429 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 142-66 chr3 187620810 187621283 + 0.5 NA Intergenic MIRc|SINE|MIR 49348 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 132.5-71 chr5 19895791 19896235 + 0.5 NA intron (NM_001349562, intron 2 of 13) MLT1D|LTR|ERVL-MaLR -9741 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 170.167-18 chr13 95226757 95227245 + 0.5 NA intron (NM_001301830, intron 3 of 19) MER5B|DNA|hAT-Charlie 16657 NR_145733 109616987 NR_145733 SNORD13G - small nucleolar RNA, C/D box 13G snoRNA 157-36 chr18 8382187 8382610 + 0.5 NA intron (NM_002845, intron 27 of 30) intron (NM_002845, intron 27 of 30) -15364 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 209.667-20 chr17 75129560 75130220 + 0.5 NA TTS (NM_014595) TTS (NM_014595) 1852 NR_045513 30833 Hs.67201 NM_014595 ENSG00000125458 NT5C DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 5', 3'-nucleotidase, cytosolic protein-coding 149.333-102 chr9 29680948 29681267 + 0.5 NA Intergenic MSTB|LTR|ERVL-MaLR -467506 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 133-80 chr6 65144292 65144796 + 0.5 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -156874 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 207.667-12 chr14 35546838 35547451 + 0.5 NA intron (NM_194301, intron 39 of 39) intron (NM_194301, intron 39 of 39) 12980 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 120.667 chr1 33015911 33016388 + 0.5 NA intron (NR_134976, intron 3 of 5) MER2|DNA|TcMar-Tigger 20734 NM_001625 204 Hs.470907 NM_001625 ENSG00000004455 AK2 ADK2 adenylate kinase 2 protein-coding 147-22 chr15 99396422 99397101 + 0.5 NA Intergenic Intergenic 139236 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 117.833-75 chr7 48825543 48825865 + 0.5 NA Intergenic (AGAG)n|Simple_repeat|Simple_repeat -98843 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 135-78 chr5 62697986 62698453 + 0.5 NA Intergenic L1M5|LINE|L1 119400 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 127.333-56 chr2 172511922 172512396 + 0.5 NA Intergenic AluSx1|SINE|Alu -43214 NR_103731 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 126.667-2 chr1 70696674 70697136 + 0.5 NA Intergenic Intergenic -9548 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 133.167-49 chr5 39878857 39879355 + 0.5 NA Intergenic Intergenic -173185 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 125.5-6 chr10 49703444 49703822 + 0.5 NA intron (NM_182554, intron 2 of 2) intron (NM_182554, intron 2 of 2) 23982 NM_182554 282966 Hs.131287 NM_182554 ENSG00000178645 C10orf53 - chromosome 10 open reading frame 53 protein-coding 205.333-4 chr1 100852208 100852954 + 0.5 NA Intergenic Intergenic 42261 NM_001033025 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 155.333-75 chr4 95543585 95543997 + 0.5 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 5182 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 136.167-47 chr21 27301572 27302006 + 0.5 NA Intergenic LTR109A2|LTR|ERV1 -334701 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 181.167-37 chr9 72842763 72843276 + 0.5 NA Intergenic Intergenic 31090 NR_121181 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 197-50 chr8 86419991 86420441 + 0.5 NA intron (NM_007013, intron 9 of 24) HAL1|LINE|L1 77669 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 162.333-35 chr2 149634267 149634858 + 0.5 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -46787 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 177-28 chr18 13019370 13019969 + 0.5 NA intron (NM_032142, intron 9 of 44) intron (NM_032142, intron 9 of 44) 28307 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 164.167-7 chr10 86428633 86429309 + 0.5 NA Intergenic L1ME2|LINE|L1 -62176 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 122.333-53 chr2 141621484 141622020 + 0.5 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 509949 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 232.833-12 chr20 16183741 16184437 + 0.5 NA Intergenic Intergenic -198207 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 131.667-11 chr10 43350870 43351222 + 0.5 NA Intergenic CpG -20590 NM_173160 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 237-13 chr3 8658237 8658766 + 0.5 NA Intergenic Intergenic -6417 NM_015931 51066 Hs.736935 NM_015931 ENSG00000125046 SSUH2 C3orf32|SSU-2|fls485 ssu-2 homolog protein-coding 199.167-42 chr8 51554657 51555133 + 0.5 NA intron (NM_144651, intron 4 of 22) MSTD-int|LTR|ERVL-MaLR 254550 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 138.167-46 chr2 228959166 228959646 + 0.5 NA Intergenic Intergenic 272686 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 193.333-44 chr5 36417136 36417540 + 0.5 NA Intergenic L2a|LINE|L2 -115436 NM_001323276 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 142-51 chr2 191883194 191883550 + 0.5 NA Intergenic AluJb|SINE|Alu -36284 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 219.167-26 chr8 133717684 133718221 + 0.5 NA Intergenic Intergenic -33886 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 151.167-16 chr14 41455542 41456072 + 0.5 NA Intergenic Intergenic -151049 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 127.167-86 chr8 52629549 52630042 + 0.5 NA intron (NM_001083617, intron 21 of 23) MER4B|LTR|ERV1 -64365 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 126-59 chr3 12224063 12224567 + 0.5 NA Intergenic LTR16|LTR|ERVL -63170 NM_001354666 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 158.167-22 chr2 55289044 55289658 + 0.5 NA 3' UTR (NM_018084, exon 32 of 32) 3' UTR (NM_018084, exon 32 of 32) 7032 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 211.833 chr1 37156779 37157637 + 0.5 NA Intergenic Intergenic -4355 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 238.333-3 chr1 213210541 213211182 + 0.5 NA intron (NM_001349662, intron 9 of 15) intron (NM_001349662, intron 9 of 15) 159620 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 134.833-26 chr2 52963270 52963706 + 0.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -260873 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 194.667-52 chr5 37909407 37909928 + 0.5 NA Intergenic Intergenic -38824 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 124.667-126 chr8 137278146 137278583 + 0.5 NA Intergenic MIRb|SINE|MIR 135224 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 119.5-16 chr10 52438540 52438855 + 0.5 NA Intergenic Intergenic 16575 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 121.833-68 chr6 49260714 49261067 + 0.5 NA Intergenic Intergenic 202363 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 139.833-13 chr11 60453423 60453795 + 0.5 NA Intergenic Intergenic -2200 NM_021950 931 Hs.712553 NM_021950 ENSG00000156738 MS4A1 B1|Bp35|CD20|CVID5|LEU-16|MS4A2|S7 membrane spanning 4-domains A1 protein-coding 119.5-55 chr20 19846954 19847355 + 0.5 NA Intergenic Intergenic -39367 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 186.667-29 chr18 47362146 47362664 + 0.5 NA intron (NR_147192, intron 1 of 2) L1MA5|LINE|L1 -18091 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 196-26 chr17 2871502 2872039 + 0.5 NA intron (NM_001330058, intron 2 of 24) L1ME4b|LINE|L1 75332 NM_001100398 23108 Hs.499659 NM_015085 ENSG00000132359 RAP1GAP2 GARNL4|RAP1GA3 RAP1 GTPase activating protein 2 protein-coding 119.5-25 chr12 33252084 33252577 + 0.5 NA Intergenic Intergenic 187489 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 116.5-91 chr8 81079030 81079405 + 0.5 NA intron (NM_018440, intron 1 of 8) intron (NM_018440, intron 1 of 8) 32851 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 146.5-48 chr2 182566162 182566485 + 0.5 NA Intergenic Intergenic -43478 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 170-38 chr2 103317428 103317789 + 0.5 NA Intergenic AluSg|SINE|Alu -333179 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 158.333-61 chr5 171699558 171700074 + 0.5 NA Intergenic Intergenic -86056 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 126.167-44 chr2 106638015 106638409 + 0.5 NA Intergenic Intergenic 150848 NM_001368307 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 147.667-76 chr8 142717348 142717731 + 0.5 NA intron (NR_038925, intron 1 of 2) L1MEg|LINE|L1 9434 NR_038925 100288181 Hs.716823 NR_038925 ENSG00000253741 LNCOC1 Lnc-OC1 lncRNA associated with ovarian cancer 1 ncRNA 131.167-36 chr18 7341987 7342309 + 0.5 NA Intergenic Intergenic 111044 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 124-83 chr6 90798050 90798544 + 0.5 NA Intergenic MER30|DNA|hAT-Charlie -211225 NM_145331 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 153.667-47 chr21 21235461 21235888 + 0.5 NA intron (NM_001352592, intron 2 of 18) intron (NM_001352592, intron 2 of 18) 88512 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 178.667-74 chr9 31422702 31423229 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR -41475 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 142.333-59 chr2 149387191 149387494 + 0.5 NA intron (NM_194317, intron 1 of 4) intron (NM_194317, intron 1 of 4) 56755 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 236.833-8 chr2 120790641 120791223 + 0.5 NA intron (NM_001371271, intron 1 of 13) intron (NM_001371271, intron 1 of 13) -1349 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 129.833-24 chr15 96955059 96955672 + 0.5 NA Intergenic Intergenic 171930 NR_158223 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 156.333-56 chr20 55977966 55978408 + 0.5 NA Intergenic Intergenic 27332 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 188.167-5 chr10 15633416 15634190 + 0.5 NA intron (NM_001291494, intron 12 of 28) intron (NM_001291494, intron 12 of 28) 86119 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 178-28 chr21 28608103 28608913 + 0.5 NA Intergenic L1PBa|LINE|L1 69190 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 164.333-19 chr13 20164987 20165420 + 0.5 NA Intergenic Intergenic -4151 NM_021954 2700 Hs.130313 NM_021954 ENSG00000121743 GJA3 CTRCT14|CX46|CZP3 gap junction protein alpha 3 protein-coding 156.333-45 chr2 6244633 6245260 + 0.5 NA Intergenic MER1A|DNA|hAT-Charlie 130476 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 154.333-50 chr3 110693113 110693494 + 0.5 NA Intergenic Intergenic 376656 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 120.167-11 chr10 72762418 72762739 + 0.5 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) 41549 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 120.667-5 chr1 64648716 64649265 + 0.5 NA intron (NM_020925, intron 9 of 26) intron (NM_020925, intron 9 of 26) 69143 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 144.333-20 chr11 120317923 120318460 + 0.5 NA intron (NM_001244682, intron 12 of 12) L1MB7|LINE|L1 -7108 NM_001198674 219902 Hs.643516 NM_174926 ENSG00000181264 TLCD5 TMEM136 TLC domain containing 5 protein-coding 151.5-42 chr20 13414583 13414968 + 0.5 NA intron (NM_017714, intron 13 of 13) intron (NM_017714, intron 13 of 13) -175088 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 120.167-29 chr17 69890605 69890977 + 0.5 NA intron (NR_109971, intron 5 of 5) intron (NR_109971, intron 5 of 5) -70916 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 146.667-37 chr15 62496715 62497149 + 0.5 NA Intergenic Intergenic 148249 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 130.167-32 chr2 146506231 146506635 + 0.5 NA Intergenic Intergenic -80624 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 146-70 chr8 80287165 80287656 + 0.5 NA Intergenic AluSz|SINE|Alu 46021 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 115-11 chr10 33092252 33092637 + 0.5 NA intron (NR_160030, intron 1 of 2) intron (NR_160030, intron 1 of 2) 24363 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 148.5-65 chr7 31839071 31839638 + 0.5 NA intron (NM_001191059, intron 10 of 18) (TA)n|Simple_repeat|Simple_repeat 152139 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 143.5-57 chr3 112280878 112281388 + 0.5 NA intron (NM_001320531, intron 2 of 27).2 intron (NM_001320531, intron 2 of 27).2 13083 NM_183061 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 150.167-28 chr2 34877612 34878150 + 0.5 NA Intergenic L1MB7|LINE|L1 200324 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 118.334 chr1 200686678 200687313 + 0.5 NA intron (NR_110787, intron 1 of 2) L1MB7|LINE|L1 -16997 NM_001349803 83479 Hs.497332 NM_031306 ENSG00000118197 DDX59 OFD5|ZNHIT5 DEAD-box helicase 59 protein-coding 172.334-7 chr8 90822379 90823152 + 0.5 NA intron (NM_022351, intron 2 of 12) intron (NM_022351, intron 2 of 12) 30990 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 115.5-71 chr4 40677704 40678126 + 0.5 NA Intergenic AluJb|SINE|Alu -47321 NM_001371114 179.5-34 chr7 79838770 79839404 + 0.5 NA Intergenic Intergenic -295744 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 133.5-40 chr3 46457331 46457753 + 0.5 NA intron (NM_001321122, intron 5 of 19) L1ME4a|LINE|L1 6112 NM_001199149 4057 Hs.529517 NM_002343 ENSG00000012223 LTF GIG12|HEL110|HLF2|LF lactotransferrin protein-coding 114.5-17 chr11 81003188 81003628 + 0.5 NA Intergenic L1ME3G|LINE|L1 -240605 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 172.5-34 chr3 51974817 51975256 + 0.5 NA promoter-TSS (NM_032750) promoter-TSS (NM_032750) -28 NM_015407 25864 Hs.534400 NM_015407 ENSG00000248487 ABHD14A DORZ1 abhydrolase domain containing 14A protein-coding 162.667-85 chr8 115567044 115567740 + 0.5 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 100621 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 155.167-14 chr14 74020943 74021441 + 0.5 NA intron (NM_025057, intron 1 of 11) intron (NM_025057, intron 1 of 11) 1843 NM_025057 80127 Hs.644621 NM_025057 ENSG00000119636 BBOF1 C14orf45|CCDC176 basal body orientation factor 1 protein-coding 142.667-90 chr6 147473587 147474127 + 0.5 NA Intergenic L1PB2|LINE|L1 -34833 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 160.5-53 chr7 22769531 22770141 + 0.5 NA Intergenic Intergenic -42216 NR_131935 541472 Hs.512234 NR_131935 ENSG00000179428 LOC541472 - uncharacterized LOC541472 ncRNA 124.833-45 chr2 122444253 122444578 + 0.5 NA Intergenic L1MA8|LINE|L1 629066 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 117-15 chr10 63670792 63671253 + 0.5 NA Intergenic Intergenic -149132 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 119.833-53 chr22 20818215 20818727 + 0.5 NA intron (NM_058004, intron 7 of 54) intron (NM_058004, intron 7 of 54) 40340 NM_058004 5297 Hs.529438 NM_002650 ENSG00000241973 PI4KA PI4K-ALPHA|PIK4CA|PMGYCHA|pi4K230 phosphatidylinositol 4-kinase alpha protein-coding 144.833-59 chr5 40913743 40914168 + 0.5 NA intron (NM_000587, intron 1 of 17) AluSc8|SINE|Alu 4458 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 121-9 chr10 92090548 92090956 + 0.5 NA intron (NM_001178137, intron 8 of 9) intron (NM_001178137, intron 8 of 9) 152527 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 169.667-61 chr5 150028724 150029305 + 0.5 NA intron (NM_014983, intron 9 of 19) L1ME4a|LINE|L1 28275 NM_014983 22993 Hs.719189 NM_014983 ENSG00000113716 HMGXB3 HMGX3|SMF HMG-box containing 3 protein-coding 152.5-68 chr8 81774834 81775246 + 0.5 NA Intergenic Intergenic 42592 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 196.333-50 chr7 4529963 4530472 + 0.5 NA Intergenic L1MB4|LINE|L1 -152078 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 115-80 chr7 133629688 133630134 + 0.5 NA intron (NM_021807, intron 9 of 17) intron (NM_021807, intron 9 of 17) 194977 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 134.834-4 chr3 122229136 122229750 + 0.5 NA intron (NM_001178065, intron 1 of 6) L3b|LINE|CR1 45116 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 205.5-22 chr2 184307563 184308068 + 0.5 NA Intergenic L1PA15|LINE|L1 -71160 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 131.5-71 chr6 60648766 60649223 + 0.5 NA Intergenic Intergenic -925136 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 134.333-7 chr1 189296484 189296856 + 0.5 NA Intergenic L2|LINE|L2 1179340 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 190.833-36 chr6 51860618 51861102 + 0.5 NA intron (NM_138694, intron 48 of 66) AluSq|SINE|Alu 226753 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 136.333-60 chr3 45685460 45685776 + 0.5 NA 3' UTR (NM_014240, exon 8 of 8) 3' UTR (NM_014240, exon 8 of 8) 3264 NR_033947 644714 Hs.712889 NR_033947 LIMD1-AS1 - LIMD1 antisense RNA 1 ncRNA 165.167-59 chr8 106860525 106861096 + 0.5 NA Intergenic AluSz|SINE|Alu -90566 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 206.167-27 chr8 101413033 101413748 + 0.5 NA Intergenic Intergenic 44497 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 118.333-67 chr3 274124 274469 + 0.5 NA intron (NM_001253387, intron 2 of 26) intron (NM_001253387, intron 2 of 26) -45387 NM_001253388 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 176.167-9 chr11 21125488 21126043 + 0.5 NA intron (NM_201551, intron 13 of 18) intron (NM_201551, intron 13 of 18) 456179 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 156-65 chr5 42906655 42907290 + 0.5 NA Intergenic Intergenic 86361 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 133.833-19 chr11 83682689 83683062 + 0.5 NA promoter-TSS (NM_001142702) promoter-TSS (NM_001142702) -450 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 132-16 chr11 58491669 58492049 + 0.5 NA Intergenic Intergenic 16246 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 125.667-25 chr12 118349459 118350006 + 0.5 NA intron (NM_001346490, intron 1 of 21) L1MB7|LINE|L1 9973 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 114.667-55 chr2 115685870 115686323 + 0.5 NA intron (NM_001321912, intron 6 of 25) Tigger17a|DNA|TcMar-Tigger 342281 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 113.5-56 chr20 3189134 3189586 + 0.5 NA TTS (NM_023935) TTS (NM_023935) 15322 NM_023935 65992 Hs.471975 NM_023935 ENSG00000198171 DDRGK1 C20orf116|SEMDSH|UFBP1|dJ1187M17.3 DDRGK domain containing 1 protein-coding 146-42 chr20 19344041 19344370 + 0.5 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -59609 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 120.333-56 chr2 150066824 150067335 + 0.5 NA Intergenic L1MB7|LINE|L1 189928 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 161.5-54 chr8 123734983 123735500 + 0.5 NA intron (NM_004306, intron 1 of 10) Charlie29a|DNA|hAT-Charlie 2152 NM_004306 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 142.167-67 chr6 25107010 25107321 + 0.5 NA TTS (NR_027626) TTS (NR_027626) 30658 NR_002174 8418 Hs.484918 NR_002174 ENSG00000168405 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 160.333-48 chr4 124193430 124193981 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 364729 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 164.5-56 chr7 82871669 82872097 + 0.5 NA intron (NM_033026, intron 10 of 24) L1ME3Cz|LINE|L1 291001 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 193.667-53 chr8 62773875 62774420 + 0.5 NA intron (NM_001304533, intron 4 of 6) L1MA3|LINE|L1 -203714 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 127.833-65 chr6 25011327 25011779 + 0.5 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) 30735 NM_001286446 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 201.167-23 chr5 77532411 77533098 + 0.5 NA Intergenic L1ME3B|LINE|L1 -40438 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 152.167 chr1 18472210 18472693 + 0.5 NA Intergenic (AATTAGT)n|Simple_repeat|Simple_repeat -8479 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 169.833-37 chr8 66304216 66304837 + 0.5 NA Intergenic Intergenic 112412 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 142.167-46 chr20 8873283 8873694 + 0.5 NA intron (NM_182734, intron 32 of 32) (TTTTA)n|Simple_repeat|Simple_repeat 42303 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 125.167-25 chr14 52722884 52723397 + 0.5 NA intron (NM_002806, intron 12 of 13) L2a|LINE|L2 -7026 NM_145251 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 137.167-21 chr15 91675583 91676021 + 0.5 NA Intergenic L1MEc|LINE|L1 -177906 NM_013272 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 141.667-33 chr16 29654510 29654934 + 0.5 NA Intergenic Intergenic -8228 NM_001030288 6693 Hs.632188 NM_003123 ENSG00000197471 SPN CD43|GALGP|GPL115|LSN sialophorin protein-coding 139.833-77 chr8 133067426 133067901 + 0.5 NA intron (NM_001045557, intron 1 of 7) AluSx1|SINE|Alu -7309 NM_006748 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 129.5-43 chr2 54054551 54054847 + 0.5 NA intron (NM_001320586, intron 3 of 6) intron (NM_001320586, intron 3 of 6) -60916 NM_001320590 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 175.667-12 chr10 119570823 119571351 + 0.5 NA Intergenic AluSz6|SINE|Alu 25942 NR_136662 7073 Hs.501203 NM_003252 ENSG00000151923 TIAL1 TCBP|TIAR TIA1 cytotoxic granule associated RNA binding protein like 1 protein-coding 154-63 chr4 79379262 79379757 + 0.5 NA Intergenic L1MA4A|LINE|L1 28719 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 125.167-78 chr8 118996653 118996944 + 0.5 NA intron (NM_001324095, intron 1 of 7) MSTB|LTR|ERVL-MaLR 44535 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 122.333-35 chr14 84915205 84915540 + 0.5 NA Intergenic MER31-int|LTR|ERV1 -356560 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 128.333-57 chr2 52934990 52935401 + 0.5 NA Intergenic Intergenic -232580 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 125.167-91 chr9 135208497 135208828 + 0.5 NA Intergenic Intergenic 27053 NR_046107 401557 Hs.640138 NR_046107 LOC401557 - uncharacterized LOC401557 ncRNA 164.667-55 chr5 40783397 40784038 + 0.5 NA intron (NM_001355028, intron 1 of 9) AluSx3|SINE|Alu 14460 NM_001355029 5562 Hs.43322 NM_006251 ENSG00000132356 PRKAA1 AMPK|AMPKa1 protein kinase AMP-activated catalytic subunit alpha 1 protein-coding 126-35 chr16 48064743 48065146 + 0.5 NA Intergenic Intergenic 81826 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 127.167-91 chr8 125991428 125991833 + 0.5 NA Intergenic HERVP71A-int|LTR|ERV1 -40433 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 120.667-120 chr9 25654815 25655360 + 0.5 NA Intergenic Intergenic 23771 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 218.667-40 chr7 52701150 52701692 + 0.5 NA Intergenic Intergenic -334212 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 137.833-14 chr14 74074610 74075112 + 0.5 NA intron (NM_001278593, intron 2 of 11) intron (NM_001278593, intron 2 of 11) 9592 NM_001278593 4329 Hs.293970 NM_005589 ENSG00000119711 ALDH6A1 MMSADHA|MMSDH aldehyde dehydrogenase 6 family member A1 protein-coding 227-9 chr16 72365259 72366198 + 0.5 NA intron (NR_126330, intron 8 of 13) intron (NR_126330, intron 8 of 13) -193278 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 142-75 chr5 60825525 60825900 + 0.5 NA intron (NM_024930, intron 1 of 8) intron (NM_024930, intron 1 of 8) 18557 NM_001297618 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 121.167-86 chr8 62437622 62438198 + 0.5 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 189056 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 119.5-82 chr5 93275475 93275774 + 0.5 NA Intergenic Intergenic 295719 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 133.667-77 chr6 13805506 13805842 + 0.5 NA intron (NM_001031713, intron 2 of 8) intron (NM_001031713, intron 2 of 8) 8886 NM_001031713 63933 Hs.214043 NM_022102 ENSG00000050393 MCUR1 C6orf79|CCDC90A|FMP32 mitochondrial calcium uniporter regulator 1 protein-coding 131.5-9 chr11 12286468 12286967 + 0.5 NA promoter-TSS (NM_032867) promoter-TSS (NM_032867) -183 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 173.667-52 chr5 2723478 2723972 + 0.5 NA Intergenic AluSz|SINE|Alu 11134 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 140.667-86 chr8 90979816 90980205 + 0.5 NA intron (NM_001363275, intron 2 of 5) intron (NM_001363275, intron 2 of 5) 5067 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 174.833-10 chr14 20739400 20739876 + 0.5 NA Intergenic L1MC|LINE|L1 -6249 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 145-67 chr5 67844082 67844695 + 0.5 NA Intergenic (ATAA)n|Simple_repeat|Simple_repeat 51175 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 139.833-21 chr13 33406233 33406647 + 0.5 NA intron (NM_001243476, intron 5 of 17) Tigger17a|DNA|TcMar-Tigger -71174 NR_146541 105370154 NR_146541 LINC02344 - long intergenic non-protein coding RNA 2344 ncRNA 130.333-32 chr14 47545236 47545673 + 0.5 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 129500 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 148.833-6 chr10 100272257 100272585 + 0.5 NA TTS (NM_001001342) TTS (NM_001001342) -4783 NM_001303406 55280 Hs.215502 NM_018294 ENSG00000095485 CWF19L1 C19L1|SCAR17|hDrn1 CWF19 like cell cycle control factor 1 protein-coding 153-20 chr15 64637480 64637871 + 0.5 NA intron (NM_015042, intron 2 of 8) L1ME3A|LINE|L1 65606 NM_001301302 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 141.333-65 chr4 36241453 36242017 + 0.5 NA intron (NR_146894, intron 1 of 32) MamTip1|DNA|hAT-Tip100 2204 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 128.333-102 chr5 136461140 136461488 + 0.5 NA Intergenic Intergenic -95838 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 126.333-35 chr14 87700070 87700468 + 0.5 NA Intergenic Intergenic -44975 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 189.833-18 chr2 116765520 116766026 + 0.5 NA Intergenic Intergenic -1048918 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 151.167-49 chr6 48466783 48467116 + 0.5 NA Intergenic L1MA3|LINE|L1 -398260 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 130-104 chr9 30129827 30130178 + 0.5 NA Intergenic Intergenic 278452 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 198.833-20 chr4 60051776 60052270 + 0.5 NA Intergenic Intergenic -870596 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 126-68 chr4 116295020 116295470 + 0.5 NA Intergenic Intergenic -4480 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 122.833-85 chr8 108328428 108328805 + 0.5 NA Intergenic Intergenic -79899 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 198-5 chr1 77986091 77986556 + 0.5 NA intron (NM_001317099, intron 1 of 3) intron (NM_001317099, intron 1 of 3) 6139 NM_001317099 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding 175.5-34 chr3 8086098 8086655 + 0.5 NA Intergenic Intergenic -70069 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 182.333-59 chr6 92107077 92107493 + 0.5 NA Intergenic L1PA16|LINE|L1 -416857 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 134-7 chr1 89514107 89514472 + 0.5 NA Intergenic Intergenic -10540 NM_001134476 23507 Hs.482017 NM_015350 ENSG00000197147 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 VRAC subunit B protein-coding 126.833-68 chr8 105644820 105645338 + 0.5 NA intron (NM_001362837, intron 5 of 7) L2a|LINE|L2 325536 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 173.667-71 chr9 24044933 24045376 + 0.5 NA Intergenic Intergenic -194553 NM_001351456 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 166-66 chr7 118168822 118169264 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -15121 NM_016200 51691 Hs.655046 NM_016200 ENSG00000128534 LSM8 NAA38 LSM8 homolog, U6 small nuclear RNA associated protein-coding 138.5-64 chr6 99713768 99714131 + 0.5 NA Intergenic MIRb|SINE|MIR 107175 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 130.5-75 chr8 109051586 109052025 + 0.5 NA Intergenic MER91C|DNA|hAT-Tip100 -34823 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 151-18 chr14 32217625 32218046 + 0.5 NA Intergenic L1MEi|LINE|L1 -14566 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 140.333-92 chr8 136998294 136998926 + 0.5 NA Intergenic L1MD2|LINE|L1 414978 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 156.833-65 chrX 49610586 49611024 + 0.5 NA Intergenic MER77|LTR|ERVL 11792 NM_001040663 2543 Hs.278606 NM_001468 ENSG00000205777 GAGE1 CT4.1|CT4.4|GAGE-1|GAGE-4|GAGE4 G antigen 1 protein-coding 143.667-77 chr4 39059330 39059824 + 0.5 NA intron (NM_001171654, intron 1 of 10) AluSz|SINE|Alu -2655 NM_015990 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 121.5-38 chr15 26708238 26708572 + 0.5 NA intron (NM_001278631, intron 3 of 9) intron (NM_001278631, intron 3 of 9) 8360 NM_001191320 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 144.833-49 chr3 105957861 105958283 + 0.5 NA Intergenic Intergenic -88671 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 165.5-62 chr8 109488501 109489026 + 0.5 NA intron (NM_177531, intron 59 of 77) (TGA)n|Simple_repeat|Simple_repeat -50937 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 184.167-52 chrX 41273799 41274456 + 0.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR -1612 NR_135616 105373185 Hs.546119 NR_135616 ENSG00000223714 LINC02601 - long intergenic non-protein coding RNA 2601 ncRNA 149.5-49 chr4 104022197 104022568 + 0.5 NA Intergenic MER89|LTR|ERV1 -302397 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 122.167-78 chr9 137762673 137762932 + 0.5 NA exon (NM_024757, exon 10 of 27) exon (NM_024757, exon 10 of 27) 25604 NR_147508 651337 Hs.603195 NR_147508 ENSG00000255585 LOC651337 - uncharacterized LOC651337 ncRNA 123.833-69 chr8 125930764 125931194 + 0.5 NA intron (NR_038447, intron 3 of 3) MLT1G3|LTR|ERVL-MaLR 20218 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 181.5-3 chr10 29321063 29321594 + 0.5 NA Intergenic LTR85a|LTR|Gypsy? 32258 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 183.833-12 chr14 67335200 67335903 + 0.5 NA 3' UTR (NM_022474, exon 15 of 15) 3' UTR (NM_022474, exon 15 of 15) 24253 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 137-36 chr15 51834872 51835274 + 0.5 NA intron (NM_014547, intron 1 of 9) Tigger19b|DNA|TcMar-Tigger 5420 NM_014547 29766 Hs.4998 NM_014547 ENSG00000138594 TMOD3 UTMOD tropomodulin 3 protein-coding 129.833-18 chr13 74002816 74003231 + 0.5 NA intron (NM_007249, intron 1 of 7) MIRb|SINE|MIR 130906 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 174.667-55 chr5 133097723 133098300 + 0.5 NA intron (NM_002154, intron 15 of 18) L1PB3|LINE|L1 45998 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 116.833-41 chr4 47607788 47608344 + 0.5 NA intron (NM_006587, intron 19 of 21) AluSq2|SINE|Alu -44603 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 173.167-25 chr3 63284220 63284698 + 0.5 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) 6151 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 126.667-21 chr14 78488130 78488494 + 0.5 NA intron (NM_004796, intron 1 of 16) MLT1B|LTR|ERVL-MaLR 84593 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 127.5-26 chr15 91496460 91496726 + 0.5 NA Intergenic Intergenic 33254 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 155.833-3 chr1 110229549 110229957 + 0.5 NA intron (NM_001039574, intron 3 of 3) intron (NM_001039574, intron 3 of 3) 19439 NR_036437 3749 Hs.153521 NM_004978 ENSG00000116396 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel subfamily C member 4 protein-coding 211.667-31 chr4 90550600 90551281 + 0.5 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 315909 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 132.167-57 chr5 155270520 155270896 + 0.5 NA Intergenic Intergenic 256953 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 149.833-60 chr8 112448029 112448632 + 0.5 NA intron (NM_052900, intron 31 of 68) MLT1B|LTR|ERVL-MaLR -195163 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 189.167-36 chr4 159429033 159429717 + 0.5 NA Intergenic Intergenic 161566 NM_001351727 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 134.5-60 chr5 81911454 81912027 + 0.5 NA Intergenic Intergenic -60283 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 144.5-68 chr4 93962361 93962697 + 0.5 NA Intergenic FLAM_C|SINE|Alu 133776 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 131.5-22 chr12 50236709 50237212 + 0.5 NA intron (NM_016357, intron 2 of 10) L1ME4b|LINE|L1 -2748 NR_031625 100302220 NR_031625 ENSG00000221604 MIR1293 MIRN1293|hsa-mir-1293|mir-1293 microRNA 1293 ncRNA 130.833-4 chr1 159517196 159517535 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 18642 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 120.5-16 chr10 124634497 124634911 + 0.5 NA intron (NM_014661, intron 4 of 4) THE1C|LTR|ERVL-MaLR -69324 NR_120630 101927944 Hs.437448 NR_120630 FAM53B-AS1 - FAM53B antisense RNA 1 ncRNA 114.5-45 chr19 28854601 28854923 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -110369 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 132-67 chr5 19938584 19938997 + 0.5 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 49410 NM_004934 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 121.333-15 chr11 44352043 44352326 + 0.5 NA Intergenic L2b|LINE|L2 -42045 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 172.167-38 chr4 173072765 173073184 + 0.5 NA Intergenic MSTC|LTR|ERVL-MaLR -95837 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 137.667-37 chr16 31467035 31467465 + 0.5 NA TTS (NM_001105247) TTS (NM_001105247) -4902 NM_001042454 7041 Hs.513530 NM_015927 ENSG00000140682 TGFB1I1 ARA55|HIC-5|HIC5|TSC-5 transforming growth factor beta 1 induced transcript 1 protein-coding 142.667-65 chr22 47361569 47361964 + 0.5 NA intron (NR_144462, intron 1 of 3) L1MC2|LINE|L1 16195 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 124.5-19 chr13 70598656 70599090 + 0.5 NA Intergenic Intergenic -416268 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 120.333-63 chr2 227089604 227090120 + 0.5 NA intron (NM_000092, intron 21 of 47) intron (NM_000092, intron 21 of 47) 74697 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 125.333-75 chr3 1266185 1266600 + 0.5 NA intron (NM_001289080, intron 4 of 22) intron (NM_001289080, intron 4 of 22) 173368 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 206.333-18 chr2 96778867 96779352 + 0.5 NA intron (NM_020184, intron 1 of 6) AluY|SINE|Alu 18207 NM_020184 26504 Hs.175043 NM_020184 ENSG00000158158 CNNM4 ACDP4 cyclin and CBS domain divalent metal cation transport mediator 4 protein-coding 141.833-25 chr4 26632530 26633062 + 0.5 NA intron (NM_018317, intron 4 of 20) Tigger2|DNA|TcMar-Tigger 48712 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 156.833-16 chr12 41442751 41443263 + 0.5 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 5268 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 180.333-32 chr2 51208963 51209384 + 0.5 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 176572 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 117.5-71 chr8 33010491 33010739 + 0.5 NA Intergenic AluSx|SINE|Alu 288780 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 190.833-8 chr11 109472482 109473118 + 0.5 NA Intergenic L1MCa|LINE|L1 50610 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 118.333-58 chr2 178360225 178360741 + 0.5 NA intron (NM_001201480, intron 13 of 25) L1MA9|LINE|L1 40241 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 114.333-115 chr8 29550136 29550566 + 0.5 NA Intergenic HAL1|LINE|L1 197758 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 125.167-79 chr8 119231267 119231766 + 0.5 NA intron (NR_149114, intron 3 of 5) L1MA8|LINE|L1 15341 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 142.667-18 chr11 103649813 103650198 + 0.5 NA Intergenic Intergenic -199901 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 145.167-25 chr15 64548048 64548550 + 0.5 NA intron (NM_015042, intron 1 of 8) Charlie17|DNA|hAT-Charlie 48879 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 147.833-46 chr3 133604109 133604467 + 0.5 NA intron (NM_001363889, intron 27 of 27) AluSz|SINE|Alu 29854 NM_001134423 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 239-3 chr10 21821350 21822069 + 0.5 NA intron (NM_022365, intron 8 of 11) intron (NM_022365, intron 8 of 11) 182021 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 119.667-30 chr18 10718136 10718497 + 0.5 NA intron (NM_022068, intron 33 of 51) intron (NM_022068, intron 33 of 51) 41333 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 118-17 chr10 82566266 82566720 + 0.5 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -333573 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 134.333-102 chr8 112056590 112056865 + 0.5 NA Intergenic L1PA15|LINE|L1 -586766 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 140-62 chr4 150339798 150340177 + 0.5 NA intron (NM_001367550, intron 48 of 56) THE1C|LTR|ERVL-MaLR -239102 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 169.667-31 chr17 61988496 61989033 + 0.5 NA intron (NM_005121, intron 11 of 29) L1MA8|LINE|L1 -60782 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 231.667-5 chr11 59352969 59353595 + 0.5 NA Intergenic L1M2a|LINE|L1 -11177 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 174.5-40 chr6 61822696 61823077 + 0.5 NA intron (NM_001350622, intron 6 of 9) L2b|LINE|L2 248756 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 137.667-59 chr2 177820270 177820678 + 0.5 NA intron (NM_001077197, intron 7 of 20) intron (NM_001077197, intron 7 of 20) 68282 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 138.833-24 chr15 72225443 72225742 + 0.5 NA intron (NM_001206798, intron 1 of 10) L1ME3Cz|LINE|L1 4319 NM_001206799 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase M1/2 protein-coding 145.667-43 chr17 75425729 75426296 + 0.5 NA Intergenic AluSg|SINE|Alu 19943 NR_037449 100500841 NR_037449 ENSG00000264511 MIR3678 mir-3678 microRNA 3678 ncRNA 190.167-49 chr8 133138292 133138875 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -35981 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 177.667-38 chr2 110683173 110683674 + 0.5 NA Intergenic Intergenic -5316 NM_001278617 699 Hs.469649 NM_004336 ENSG00000169679 BUB1 BUB1A|BUB1L|hBUB1 BUB1 mitotic checkpoint serine/threonine kinase protein-coding 130.667-79 chr5 149380898 149381473 + 0.5 NA intron (NM_001317987, intron 1 of 2) intron (NM_001317987, intron 1 of 2) -1893 NM_014443 27190 Hs.156979 NM_014443 ENSG00000127743 IL17B IL-17B|IL-20|NIRF|ZCYTO7 interleukin 17B protein-coding 149.167-66 chr9 82688013 82688389 + 0.5 NA Intergenic Intergenic 374941 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 177.667-56 chr5 65933320 65933854 + 0.5 NA intron (NM_001253697, intron 1 of 25) intron (NM_001253697, intron 1 of 25) 7012 NM_001253697 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 133.667-42 chr17 59849062 59849495 + 0.5 NA Intergenic Intergenic 8012 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 125.5-74 chr7 39624322 39624780 + 0.5 NA intron (NM_005402, intron 1 of 4) intron (NM_005402, intron 1 of 4) 979 NM_005402 5898 Hs.6906 NM_005402 ENSG00000006451 RALA RAL RAS like proto-oncogene A protein-coding 147.833-42 chr3 20952703 20953238 + 0.5 NA Intergenic L1MEc|LINE|L1 -452756 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 115.833-53 chr4 129003715 129004193 + 0.5 NA intron (NM_144643, intron 5 of 20) intron (NM_144643, intron 5 of 20) 89585 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 116-28 chr15 42000709 42001129 + 0.5 NA intron (NM_001206670, intron 7 of 19) intron (NM_001206670, intron 7 of 19) 28156 NR_120334 101928388 Hs.738043 NR_120334 ENSG00000246740 PLA2G4E-AS1 - PLA2G4E antisense RNA 1 ncRNA 122.167-30 chr18 8314917 8315195 + 0.5 NA intron (NM_002845, intron 19 of 30) intron (NM_002845, intron 19 of 30) 51978 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 134.167-36 chr2 30424038 30424320 + 0.5 NA Intergenic AluY|SINE|Alu -23067 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 119.833-11 chr1 187787898 187788200 + 0.5 NA Intergenic Intergenic 344421 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 134.167-24 chr14 52141731 52142073 + 0.5 NA Intergenic AluY|SINE|Alu -72843 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 114.333-7 chr1 114867599 114867887 + 0.5 NA intron (NM_001282542, intron 8 of 30) L1MC1|LINE|L1 12880 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 142-49 chr2 161675117 161675470 + 0.5 NA intron (NM_001354451, intron 1 of 25) intron (NM_001354451, intron 1 of 25) 50877 NM_001354445 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 119.333-23 chr12 123789896 123790194 + 0.5 NA exon (NM_207437, exon 11 of 78) exon (NM_207437, exon 11 of 78) 27550 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 117.833-12 chr11 35450165 35450620 + 0.5 NA intron (NM_001001991, intron 6 of 10) intron (NM_001001991, intron 6 of 10) -30334 NM_001252652 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 113.167-54 chr3 157303024 157303301 + 0.5 NA intron (NM_001167911, intron 10 of 12) intron (NM_001167911, intron 10 of 12) -133688 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 144.333-34 chr15 90333123 90333454 + 0.5 NA Intergenic MLT1O|LTR|ERVL-MaLR 16159 NR_028287 23766 Hs.592014 NR_028287 GABARAPL3 ATG8D GABA type A receptor associated protein like 3 pseudogene pseudo 220.333-14 chr2 13436941 13437744 + 0.5 NA Intergenic Intergenic -430329 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 135.667-63 chr2 238664513 238664855 + 0.5 NA Intergenic LTR78|LTR|ERV1 -109185 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 119.333-45 chr2 10585814 10586239 + 0.5 NA intron (NR_048552, intron 18 of 19) L1MB8|LINE|L1 103949 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 199.833-26 chr6 115455116 115455600 + 0.5 NA Intergenic Intergenic 188477 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 137.833-42 chr5 156524182 156524676 + 0.5 NA intron (NM_001128209, intron 3 of 7) intron (NM_001128209, intron 3 of 7) 197265 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 165-6 chr10 4318218 4319063 + 0.5 NA Intergenic Intergenic -65606 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 140.5-45 chr3 49401628 49401964 + 0.5 NA intron (NM_001664, intron 1 of 4) Tigger4a|DNA|TcMar-Tigger 10180 NM_001664 387 Hs.247077 NM_001664 ENSG00000067560 RHOA ARH12|ARHA|RHO12|RHOH12 ras homolog family member A protein-coding 117.167-45 chr2 120715423 120715760 + 0.5 NA Intergenic L2a|LINE|L2 -20277 NM_001371271 186-4 chr1 232706211 232706599 + 0.5 NA Intergenic Intergenic -11666 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 137.333-46 chr2 13331975 13332442 + 0.5 NA Intergenic MIRc|SINE|MIR -325195 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 135.833-14 chr13 50654468 50654993 + 0.5 NA Intergenic Intergenic -127281 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 158.333-80 chrX 73666055 73666489 + 0.5 NA intron (NM_001300884, intron 3 of 4) L1PA11|LINE|L1 103124 NM_001039840 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 128.333-41 chr15 80864708 80865122 + 0.5 NA intron (NM_018689, intron 1 of 28) MER5A|DNA|hAT-Charlie -22842 NR_030393 693132 NR_030393 ENSG00000208003 MIR549A MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a microRNA 549a ncRNA 133.5-75 chr7 90487246 90487747 + 0.5 NA intron (NM_001365443, intron 3 of 6) intron (NM_001365443, intron 3 of 6) 17857 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 116.833-63 chr8 26817177 26817561 + 0.5 NA intron (NM_001322504, intron 1 of 1) L1ME1|LINE|L1 48286 NM_033302 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 117.5-14 chr13 33819592 33820227 + 0.5 NA intron (NM_002915, intron 1 of 8) intron (NM_002915, intron 1 of 8) 1760 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 204.167-16 chr2 222675440 222675929 + 0.5 NA intron (NM_058165, intron 1 of 5) AluY|SINE|Alu 4026 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 139.667-58 chr2 177874086 177874523 + 0.5 NA intron (NM_001077197, intron 6 of 20) MIRb|SINE|MIR 14452 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 165.167-57 chr8 81580260 81580952 + 0.5 NA Intergenic Intergenic -49216 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 186-43 chr5 41874670 41875081 + 0.5 NA Intergenic MER57C2|LTR|ERV1 -4450 NR_157114 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 171.167-11 chr10 81863626 81864347 + 0.5 NA Intergenic Intergenic -11208 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 242.833-6 chr3 187603437 187604092 + 0.5 NA Intergenic Intergenic 66630 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 125.833-75 chr6 2707618 2708148 + 0.5 NA intron (NM_001012418, intron 2 of 12) intron (NM_001012418, intron 2 of 12) 43039 NM_001012418 340156 Hs.127830 NM_001012418 ENSG00000145949 MYLK4 SgK085 myosin light chain kinase family member 4 protein-coding 123.833-70 chr8 127627992 127628351 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 105796 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 162.5-9 chr11 8488335 8488901 + 0.5 NA intron (NM_001352388, intron 1 of 14) L1M4|LINE|L1 105358 NM_001352397 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 175-54 chr6 83913832 83914315 + 0.5 NA intron (NM_016230, intron 4 of 15) intron (NM_016230, intron 4 of 15) 54384 NM_016230 51167 Hs.5741 NM_016230 ENSG00000065615 CYB5R4 NCB5OR|cb5/cb5R|dJ676J13.1 cytochrome b5 reductase 4 protein-coding 180.5-31 chr2 160348937 160349445 + 0.5 NA intron (NM_002897, intron 2 of 13) MER117|DNA|hAT-Charlie 58691 NR_039946 100616364 NR_039946 ENSG00000283734 MIR4785 mir-4785 microRNA 4785 ncRNA 135.833 chr10 29897972 29898307 + 0.5 NA Intergenic LTR78|LTR|ERV1 -161203 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 136.833-79 chr8 129019932 129020249 + 0.5 NA Intergenic L2c|LINE|L2 -54089 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 131.667-67 chr20 44113657 44114094 + 0.5 NA intron (NM_020433, intron 5 of 5) L2c|LINE|L2 73313 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 136.167-81 chr9 92564979 92565261 + 0.5 NA intron (NM_001286969, intron 4 of 6) L1MB3|LINE|L1 -29028 NM_001197295 1842 Hs.117060 NM_001393 ENSG00000106823 ECM2 - extracellular matrix protein 2 protein-coding 150.833-4 chr12 20565648 20566294 + 0.5 NA intron (NM_000921, intron 2 of 15) intron (NM_000921, intron 2 of 15) -5893 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 158-21 chr15 75210997 75211579 + 0.5 NA 3' UTR (NM_015492, exon 3 of 3) 3' UTR (NM_015492, exon 3 of 3) 9406 NM_015492 56905 Hs.17936 NM_015492 ENSG00000167173 C15orf39 - chromosome 15 open reading frame 39 protein-coding 149-49 chr20 46326873 46327296 + 0.5 NA Intergenic Intergenic -18586 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 122.167-72 chr8 125242193 125242647 + 0.5 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 150560 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 117.167-89 chr7 112249093 112249511 + 0.5 NA intron (NM_021994, intron 1 of 11) intron (NM_021994, intron 1 of 11) 42607 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 139.833-50 chr21 21574125 21574665 + 0.5 NA Intergenic Intergenic 162924 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 129.167-52 chr4 19229582 19229853 + 0.5 NA Intergenic AluSq2|SINE|Alu -1022188 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 200.5-31 chr3 81411406 81411973 + 0.5 NA Intergenic Intergenic 349956 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 146.5-33 chr15 96794571 96795052 + 0.5 NA Intergenic Intergenic 11376 NR_158223 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 124.167-60 chr3 174284720 174285245 + 0.5 NA 3' UTR (NM_001365935, exon 6 of 6) 3' UTR (NM_001365935, exon 6 of 6) -364186 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 124.667-108 chr6 25651467 25651805 + 0.5 NA promoter-TSS (NM_006998) promoter-TSS (NM_006998) -579 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 126.5-38 chr18 13300924 13301278 + 0.5 NA intron (NM_181482, intron 2 of 5) intron (NM_181482, intron 2 of 5) 22996 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 120.167-43 chr2 215557043 215557347 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 103488 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 122.833-57 chr3 61454773 61455021 + 0.5 NA Intergenic Intergenic -106674 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 140.667-78 chr7 44769196 44769562 + 0.5 NA 3' UTR (NM_031449, exon 19 of 19) 3' UTR (NM_031449, exon 19 of 19) 13191 NM_174929 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 116.333-69 chr4 76126651 76126980 + 0.5 NA intron (NM_017426, intron 8 of 11) L1M5|LINE|L1 21582 NM_017426 53371 Hs.430435 NM_017426 ENSG00000138750 NUP54 - nucleoporin 54 protein-coding 124-19 chr11 33500400 33500743 + 0.5 NA intron (NM_012194, intron 1 of 20) L1MA4|LINE|L1 124463 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 128.333-80 chr3 89299767 89300148 + 0.5 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 192336 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 141 chr1 41070198 41070871 + 0.5 NA intron (NM_001172218, intron 11 of 15) intron (NM_001172218, intron 11 of 15) -48779 NM_001168247 200172 Hs.194609 NM_144990 ENSG00000171790 SLFNL1 - schlafen like 1 protein-coding 161.667-66 chr5 35442886 35443397 + 0.5 NA Intergenic L1ME1|LINE|L1 -174722 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 131.5-23 chr13 75309720 75310059 + 0.5 NA intron (NM_001286658, intron 13 of 19) intron (NM_001286658, intron 13 of 19) 69301 NR_132375 106144536 Hs.591226 NR_132375 LINC01078 - long intergenic non-protein coding RNA 1078 ncRNA 128.667-110 chr9 69724877 69725307 + 0.5 NA intron (NM_001099666, intron 5 of 7) intron (NM_001099666, intron 5 of 7) 34919 NM_001099666 375743 Hs.744192 NM_001099666 ENSG00000188647 PTAR1 - protein prenyltransferase alpha subunit repeat containing 1 protein-coding 177-55 chr5 124020685 124021273 + 0.5 NA Intergenic L1MEg|LINE|L1 417541 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 142-46 chr2 96658446 96658841 + 0.5 NA intron (NM_001293083, intron 9 of 52) L1ME1|LINE|L1 15879 NM_001293083 90342 Hs.534025 NM_001077400 ENSG00000249715 FER1L5 - fer-1 like family member 5 protein-coding 120-29 chr13 59102944 59103392 + 0.5 NA Intergenic Intergenic -870051 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 179-30 chr2 235803911 235804555 + 0.5 NA intron (NM_001037131, intron 8 of 17) L1ME3C|LINE|L1 -286312 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 174-3 chr1 66818139 66818745 + 0.5 NA intron (NM_024763, intron 16 of 16) intron (NM_024763, intron 16 of 16) -17183 NM_005478 10022 Hs.251380 NM_005478 ENSG00000172410 INSL5 PRO182|UNQ156 insulin like 5 protein-coding 128.167-33 chr16 48213558 48213987 + 0.5 NA intron (NM_001370497, intron 9 of 29) MIRc|SINE|MIR 18499 NM_033151 85320 Hs.652267 NM_032583 ENSG00000121270 ABCC11 EWWD|MRP8|WW ATP binding cassette subfamily C member 11 protein-coding 149.833-32 chr4 86608376 86608744 + 0.5 NA intron (NM_080685, intron 1 of 47) MIR|SINE|MIR 14245 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 138.667-108 chr8 126605255 126605876 + 0.5 NA Intergenic Intergenic -47087 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 126.833-12 chr10 67031157 67031583 + 0.5 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 19104 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 200-37 chr2 100374768 100375513 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity 42528 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 153.833-28 chr17 61253504 61253929 + 0.5 NA intron (NM_001330413, intron 23 of 25) MamGypsy2-I|LTR|Gypsy 113988 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 165.167-14 chr14 64330265 64330831 + 0.5 NA intron (NM_001291712, intron 2 of 13) MLT2D|LTR|ERVL 8002 NM_001291723 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 139-10 chr13 20560442 20560847 + 0.5 NA Intergenic L2|LINE|L2 -6513 NM_001353578 8100 Hs.187376 NM_006531 ENSG00000032742 IFT88 D13S1056E|DAF19|TG737|TTC10|hTg737 intraflagellar transport 88 protein-coding 222.833-18 chr4 109710155 109710832 + 0.5 NA 3' UTR (NM_030821, exon 4 of 4) 3' UTR (NM_030821, exon 4 of 4) -7048 NM_032992 839 Hs.654616 NM_001226 ENSG00000138794 CASP6 MCH2 caspase 6 protein-coding 133.833-62 chr5 74433743 74434155 + 0.5 NA intron (NR_126354, intron 2 of 2) intron (NR_126354, intron 2 of 2) 103027 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 116.333-92 chr6 50100386 50100843 + 0.5 NA Intergenic Intergenic -50685 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 117.333-88 chr5 86978279 86978646 + 0.5 NA Intergenic Intergenic 136492 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 153.833-62 chr8 109439189 109439701 + 0.5 NA intron (NM_177531, intron 32 of 77) L2c|LINE|L2 76984 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 120.667-89 chr4 89934389 89934783 + 0.5 NA intron (NM_001371403, intron 6 of 8) intron (NM_001371403, intron 6 of 8) 39732 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 144.167-46 chr20 5550229 5550630 + 0.5 NA intron (NM_019593, intron 19 of 19) HAL1|LINE|L1 -40427 NR_109860 101929207 Hs.516871 NR_109860 ENSG00000225640 LINC01729 - long intergenic non-protein coding RNA 1729 ncRNA 127.167-45 chr2 22512168 22512614 + 0.5 NA Intergenic MIRc|SINE|MIR -24088 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 122.333-94 chr5 137113600 137114019 + 0.5 NA intron (NM_004598, intron 4 of 10) intron (NM_004598, intron 4 of 10) -14388 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 130-31 chr14 21931388 21931836 + 0.5 NA Intergenic L1MB3|LINE|L1 -260595 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 153.167-35 chr3 118109104 118109562 + 0.5 NA Intergenic AluJb|SINE|Alu -418408 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 144.833-13 chr11 116003340 116003813 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -243376 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 151.833-52 chr7 30742238 30742819 + 0.5 NA Intergenic Intergenic -9607 NM_001199219 11185 Hs.632629 NM_006774 ENSG00000241644 INMT TEMT indolethylamine N-methyltransferase protein-coding 123.833-5 chr1 200148171 200148708 + 0.5 NA intron (NM_205860, intron 7 of 7) intron (NM_205860, intron 7 of 7) 105614 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 183.833-33 chr5 29964081 29964598 + 0.5 NA Intergenic L1M1|LINE|L1 83779 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 129-24 chr12 3546971 3547422 + 0.5 NA intron (NM_019854, intron 2 of 9) L1ME2|LINE|L1 -54377 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 128.167-60 chr4 72331166 72331500 + 0.5 NA intron (NM_014243, intron 5 of 21) intron (NM_014243, intron 5 of 21) 237888 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 125.833-10 chr10 72623890 72624142 + 0.5 NA intron (NM_006077, intron 1 of 11) Tigger12|DNA|TcMar-Tigger 2063 NM_001195518 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 136.833-40 chr3 44725176 44725590 + 0.5 NA Intergenic L2c|LINE|L2 -4223 NM_145044 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 121.5-94 chr7 4120220 4120688 + 0.5 NA intron (NM_152744, intron 25 of 44) L1MEd|LINE|L1 -9231 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 163.5-66 chr6 154499738 154500242 + 0.5 NA intron (NM_001368117, intron 1 of 12) intron (NM_001368117, intron 1 of 12) 10256 NM_001368116 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 114.667-78 chr3 95153245 95153617 + 0.5 NA Intergenic Intergenic 215168 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 191.833-11 chr17 51274320 51275041 + 0.5 NA intron (NM_016001, intron 5 of 13) AluSp|SINE|Alu 14134 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18 small subunit processome component protein-coding 114.333-83 chr22 28105647 28106072 + 0.5 NA intron (NM_001145418, intron 7 of 22) intron (NM_001145418, intron 7 of 22) -185247 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 127.833-52 chr3 54852395 54852763 + 0.5 NA intron (NM_018398, intron 17 of 37) intron (NM_018398, intron 17 of 37) 48676 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 129.333-63 chr3 135918572 135918880 + 0.5 NA Intergenic L2a|LINE|L2 -47002 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 123.833-73 chr9 33201030 33201574 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 33443 NR_108108 101929639 Hs.545818 NR_108108 ENSG00000233554 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 133.667-50 chr2 71972018 71972477 + 0.5 NA Intergenic MER21C|LTR|ERVL 175615 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 146.667-25 chr12 122649375 122649796 + 0.5 NA Intergenic AluSp|SINE|Alu 46414 NR_162094 113218484 NR_162094 MIR9902-1 - microRNA 9902-1 ncRNA 184.667 chr1 97206753 97207207 + 0.5 NA intron (NM_000110, intron 19 of 22) intron (NM_000110, intron 19 of 22) 111057 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 180.833-17 chr17 39010689 39011473 + 0.5 NA Intergenic L1MA3|LINE|L1 16029 NR_135645 105371766 Hs.311469 NR_135645 ENSG00000266013 LINC02079 - long intergenic non-protein coding RNA 2079 ncRNA 164-35 chr2 162745161 162745656 + 0.5 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -23528 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 145-65 chr5 23457144 23457557 + 0.5 NA Intergenic Intergenic -50259 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 130.333-41 chr18 4705400 4705964 + 0.5 NA Intergenic FLAM_A|SINE|Alu -250375 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 169.333-18 chr12 43443552 43443969 + 0.5 NA intron (NM_025003, intron 16 of 38) intron (NM_025003, intron 16 of 38) 108443 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 147-60 chr4 77901577 77902005 + 0.5 NA intron (NM_020236, intron 6 of 8) L1M4a2|LINE|L1 38961 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 158.833-42 chr3 173657843 173658345 + 0.5 NA intron (NM_001365928, intron 3 of 6) intron (NM_001365928, intron 3 of 6) 73660 NM_001365933 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 143.5-18 chr13 79041930 79042334 + 0.5 NA Intergenic Intergenic -202082 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 196.667-22 chr18 65103645 65104074 + 0.5 NA Intergenic Intergenic -646393 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 129.5-52 chr20 84919 85321 + 0.5 NA Intergenic L1MA2|LINE|L1 -2552 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 123.333-22 chr10 133411234 133411579 + 0.5 NA intron (NM_138384, intron 9 of 10) L1MA4|LINE|L1 13211 NM_001012508 503542 Hs.64968 NM_001012508 ENSG00000203772 SPRN SHADOO|SHO|bA108K14.1 shadow of prion protein protein-coding 157.333-30 chr18 22485470 22486122 + 0.5 NA Intergenic Intergenic -67881 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 134-105 chr8 117947595 117948074 + 0.5 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -26921 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 183.667-6 chr1 78359197 78359780 + 0.5 NA intron (NR_027310, intron 4 of 5) THE1B|LTR|ERVL-MaLR 129889 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 170.5-8 chr10 12696758 12697207 + 0.5 NA intron (NM_001351032, intron 5 of 11) intron (NM_001351032, intron 5 of 11) 28371 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 186.833-4 chr10 50271439 50271931 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -23075 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 118.667-37 chr16 57320718 57321303 + 0.5 NA Intergenic AluSq2|SINE|Alu -36338 NM_015993 51090 Hs.632215 NM_015993 ENSG00000102934 PLLP PMLP|TM4SF11 plasmolipin protein-coding 166-61 chr7 18939671 18940155 + 0.5 NA intron (NM_058176, intron 22 of 22) intron (NM_058176, intron 22 of 22) 177723 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 222-16 chr15 88158008 88158560 + 0.5 NA intron (NM_001007156, intron 5 of 15) intron (NM_001007156, intron 5 of 15) 47690 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 183.833-26 chr2 138337571 138338309 + 0.5 NA Intergenic Intergenic -163830 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 139.833-7 chr10 97639700 97640067 + 0.5 NA promoter-TSS (NM_018425) promoter-TSS (NM_018425) -803 NM_018425 55361 Hs.25300 NM_018425 ENSG00000155252 PI4K2A PI4KII|PIK42A phosphatidylinositol 4-kinase type 2 alpha protein-coding 120.5-35 chr15 68223376 68223700 + 0.5 NA intron (NM_017882, intron 1 of 6) intron (NM_017882, intron 1 of 6) 6190 NM_017882 54982 Hs.584921 NM_017882 ENSG00000128973 CLN6 CLN4A|HsT18960|nclf CLN6 transmembrane ER protein protein-coding 138.167-71 chr7 40912378 40912824 + 0.5 NA Intergenic Intergenic 67338 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 161.833-25 chr2 238711993 238712651 + 0.5 NA Intergenic MSTB1|LTR|ERVL-MaLR 135585 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 241.667-22 chr3 70623985 70624544 + 0.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR -311626 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 165.167-61 chr8 134237064 134237538 + 0.5 NA Intergenic L1MD2|LINE|L1 350805 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 168.667-44 chr2 224723124 224723587 + 0.5 NA Intergenic Intergenic -137958 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 158.833-58 chr7 39094729 39095234 + 0.5 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -81414 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 135.333-87 chr8 116646603 116646946 + 0.5 NA intron (NM_003756, intron 6 of 7) intron (NM_003756, intron 6 of 7) -5326 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 130.833-33 chr2 134513777 134514288 + 0.5 NA intron (NM_030923, intron 4 of 7) MLT1G3|LTR|ERVL-MaLR 204968 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 166.833-47 chr8 140766711 140767122 + 0.5 NA intron (NM_001352718, intron 14 of 32) MIRb|SINE|MIR -34263 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 153.5-55 chr5 81235906 81236544 + 0.5 NA intron (NM_001099736, intron 1 of 9) intron (NM_001099736, intron 1 of 9) 2903 NM_001099735 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 151.5-56 chr4 89313725 89314078 + 0.5 NA Intergenic L1MB8|LINE|L1 -6101 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 123.5-59 chr4 114567855 114568319 + 0.5 NA Intergenic Intergenic -30315 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 191-30 chr2 46626822 46627389 + 0.5 NA 3' UTR (NM_014171, exon 5 of 5) 3' UTR (NM_014171, exon 5 of 5) 9890 NM_014171 9419 Hs.133998 NM_014171 ENSG00000119878 CRIPT HSPC139|SSMDF CXXC repeat containing interactor of PDZ3 domain protein-coding 134.833-9 chr11 73731562 73731913 + 0.5 NA intron (NM_198896, intron 1 of 7) intron (NM_198896, intron 1 of 7) 28356 NM_001243719 5870 Hs.503222 NM_002869 ENSG00000175582 RAB6A RAB6 RAB6A, member RAS oncogene family protein-coding 127.5-27 chr17 38876379 38876937 + 0.5 NA intron (NR_073384, intron 1 of 7) AluSz|SINE|Alu 6600 NR_073384 3927 Hs.741156 NM_006148 ENSG00000002834 LASP1 Lasp-1|MLN50 LIM and SH3 protein 1 protein-coding 118.167-15 chr13 82644641 82645159 + 0.5 NA Intergenic Intergenic 1237493 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 166.167-45 chr5 67109321 67109848 + 0.5 NA intron (NM_001297651, intron 7 of 25) intron (NM_001297651, intron 7 of 25) 87215 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 117.667-42 chr14 56100324 56100634 + 0.5 NA Intergenic Intergenic -17932 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 145-80 chr7 32003052 32003496 + 0.5 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 67133 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 222.167 chr1 167038158 167038796 + 0.5 NA Intergenic L1MA4A|LINE|L1 49197 NM_032858 84944 Hs.651245 NM_032858 ENSG00000143194 MAEL CT128|SPATA35 maelstrom spermatogenic transposon silencer protein-coding 116-37 chr17 59436502 59436803 + 0.5 NA intron (NR_110813, intron 2 of 2) AluJb|SINE|Alu 70569 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 138.333-11 chr1 168340262 168340791 + 0.5 NA Intergenic MER31-int|LTR|ERV1 -34998 NR_030284 693142 NR_030284 ENSG00000207974 MIR557 MIRN557|hsa-mir-557 microRNA 557 ncRNA 196.167-17 chr18 60941024 60941834 + 0.5 NA Intergenic Intergenic -392001 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 148.833-63 chr8 132525635 132526133 + 0.5 NA Intergenic LTR65|LTR|ERV1 35595 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 120.667-40 chr14 95162908 95163229 + 0.5 NA intron (NR_015415, intron 3 of 3) LTR36|LTR|ERV1 -5058 NM_001291628 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 119-7 chr1 117875254 117875778 + 0.5 NA intron (NM_017686, intron 13 of 13) MSTB1-int|LTR|ERVL-MaLR 54105 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 113.833-65 chr4 117839440 117839684 + 0.5 NA intron (NR_147154, intron 1 of 1) L2|LINE|L2 5161 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 145.167-43 chr3 17009863 17010252 + 0.5 NA exon (NM_001144382, exon 2 of 6).2 exon (NM_001144382, exon 2 of 6).2 76861 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 218.167 chr1 178434467 178435403 + 0.5 NA intron (NM_004841, intron 3 of 15) intron (NM_004841, intron 3 of 15) -78174 NM_001170723 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 119.167-75 chr5 44653433 44653711 + 0.5 NA Intergenic L1ME1|LINE|L1 -143290 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 153.833-54 chr6 45145746 45146194 + 0.5 NA intron (NM_001350325, intron 2 of 10) L1PB2|LINE|L1 51800 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 119.5-17 chr10 73835371 73835870 + 0.5 NA intron (NM_001367518, intron 13 of 20) intron (NM_001367518, intron 13 of 20) -23800 NR_160745 8509 Hs.654758 NM_003635 ENSG00000166507 NDST2 HSST2|N-HSST 2|NST2 N-deacetylase and N-sulfotransferase 2 protein-coding 119.167-59 chr3 4126428 4126729 + 0.5 NA Intergenic Intergenic -176726 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 131-63 chr6 120250019 120250472 + 0.5 NA Intergenic L2|LINE|L2 235066 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 127.333-11 chr10 17876915 17877249 + 0.5 NA intron (NM_002438, intron 17 of 29) (TA)n|Simple_repeat|Simple_repeat 31975 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 145.833-20 chr12 3825184 3825576 + 0.5 NA intron (NM_020367, intron 4 of 7) intron (NM_020367, intron 4 of 7) 48019 NM_001286522 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 145.333-57 chr4 66035476 66035914 + 0.5 NA Intergenic Intergenic -241129 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 130.167-64 chr6 12246903 12247251 + 0.5 NA Intergenic Intergenic -43284 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 119-34 chr15 64655494 64655851 + 0.5 NA intron (NM_015042, intron 2 of 8) AluSq2|SINE|Alu 47609 NM_001301302 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 156.833-25 chr2 4687490 4687992 + 0.5 NA Intergenic Intergenic -31519 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 213.833-29 chr5 23995623 23996165 + 0.5 NA intron (NR_131245, intron 4 of 4) Charlie17a|DNA|hAT-Charlie 44546 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 225.333-23 chr5 118815829 118816607 + 0.5 NA Intergenic L1MA4|LINE|L1 -158368 NR_036263 100422872 NR_036263 ENSG00000283429 MIR1244-3 - microRNA 1244-3 ncRNA 155.667-26 chr14_GL000225v1_random 122663 123184 + 0.5 NA NA BSR/Beta|Satellite|Satellite NA NA 128.833-51 chr21 31760079 31760455 + 0.5 NA Intergenic AluSz|SINE|Alu -28149 NM_001145444 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 128.167-87 chr8 127634688 127635106 + 0.5 NA Intergenic L2b|LINE|L2 99070 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 126.333-51 chr18 54378730 54379063 + 0.5 NA non-coding (NR_110234, exon 6 of 6) non-coding (NR_110234, exon 6 of 6) 20979 NR_110234 162681 Hs.208701 NM_173529 ENSG00000166845 C18orf54 LAS2 chromosome 18 open reading frame 54 protein-coding 159.667-26 chr12 58630109 58630541 + 0.5 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 38623 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 134-34 chr13 113356447 113356807 + 0.5 NA intron (NR_046541, intron 2 of 2) intron (NR_046541, intron 2 of 2) 4954 NR_046541 100874068 Hs.661837 NR_046541 GRTP1-AS1 - GRTP1 antisense RNA 1 ncRNA 137.5-42 chr2 16308867 16309377 + 0.5 NA Intergenic Intergenic 258695 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 162.167-21 chr2 61145699 61146334 + 0.5 NA intron (NM_001316317, intron 1 of 2) L1MC4a|LINE|L1 900 NM_001367070 339804 Hs.140617 NM_001143959 ENSG00000237651 C2orf74 - chromosome 2 open reading frame 74 protein-coding 120.5-14 chr10 91492330 91492722 + 0.5 NA intron (NM_182765, intron 13 of 20) intron (NM_182765, intron 13 of 20) 82241 NR_145526 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 159.167-50 chr4 95876171 95876735 + 0.5 NA Intergenic L1PA5|LINE|L1 36360 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 113.667-65 chr2 79674702 79674971 + 0.5 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -25477 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 179.167-33 chr3 187530471 187530994 + 0.5 NA Intergenic Intergenic 83686 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 170.167-52 chr7 120259764 120260190 + 0.5 NA Intergenic Intergenic -13198 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 144.167-72 chr8 83483655 83484305 + 0.5 NA Intergenic Intergenic 80222 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 120.833-19 chr17 46991594 46991904 + 0.5 NA Intergenic MER58A|DNA|hAT-Charlie -12496 NM_203400 388394 Hs.367999 NM_203400 ENSG00000179673 RPRML - reprimo like protein-coding 131.833-33 chr2 122463599 122463979 + 0.5 NA Intergenic L2a|LINE|L2 609692 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 151.333-61 chr3 3861033 3861408 + 0.5 NA Intergenic Intergenic -60345 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 158.833-40 chr3 108819640 108820042 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -2945 NM_001317747 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 140.167-40 chr21 26522841 26523348 + 0.5 NA intron (NR_135515, intron 2 of 3) intron (NR_135515, intron 2 of 3) 50192 NM_001320768 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 183.5-24 chr17 52636817 52637274 + 0.5 NA Intergenic L1PREC2|LINE|L1 -225076 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 120-101 chr7 87120416 87120815 + 0.5 NA Intergenic Intergenic 31702 NR_136252 101927420 Hs.633960 NR_136252 ENSG00000224046 LOC101927420 - uncharacterized LOC101927420 ncRNA 196-57 chr7 30774841 30775538 + 0.5 NA intron (NM_032222, intron 1 of 17) MER21B|LTR|ERVL 3772 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 149-47 chr2 228025183 228025658 + 0.5 NA exon (NM_001142644, exon 5 of 12) exon (NM_001142644, exon 5 of 12) 153789 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 115.167-88 chr5 153696860 153697090 + 0.5 NA intron (NM_000827, intron 8 of 15) intron (NM_000827, intron 8 of 15) 202012 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 123-26 chr15 89916725 89917211 + 0.5 NA Intergenic Arthur1|DNA|hAT-Tip100 -4016 NM_001199058 100526783 NM_001199058 ENSG00000250021 ARPIN-AP3S2 ARPIN|C15orf38|C15orf38-AP3S2 ARPIN-AP3S2 readthrough protein-coding 167.333-19 chr11 108455617 108456136 + 0.5 NA intron (NR_147053, intron 3 of 12) AluSz6|SINE|Alu 11653 NM_001351110 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 145.5-52 chr4 54901772 54902128 + 0.5 NA Intergenic L3|LINE|CR1 223645 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 204.667-33 chr3 147087564 147088343 + 0.5 NA Intergenic L1ME4c|LINE|L1 166030 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 139.167 chr1 26236550 26236906 + 0.5 NA intron (NM_022778, intron 1 of 13) MER4B|LTR|ERV1 2528 NM_001281517 64793 Hs.63795 NM_022778 ENSG00000130695 CEP85 CCDC21 centrosomal protein 85 protein-coding 172.5-7 chr1 176670202 176670564 + 0.5 NA intron (NM_021936, intron 3 of 4) intron (NM_021936, intron 3 of 4) 207208 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 166.167-32 chr3 159059188 159059755 + 0.5 NA Intergenic L2a|LINE|L2 -9781 NM_001197100 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 154.667-24 chr14 68309856 68310389 + 0.5 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 318665 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 146.167-54 chr5 64201319 64201923 + 0.5 NA intron (NM_001113561, intron 2 of 7) intron (NM_001113561, intron 2 of 7) 35778 NM_001323292 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 182.667-20 chr14 67282976 67283481 + 0.5 NA intron (NM_001256550, intron 3 of 14) intron (NM_001256550, intron 3 of 14) 41793 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 178.5-44 chr2 88661240 88661766 + 0.5 NA Intergenic Intergenic -30170 NM_144563 22934 Hs.469264 NM_144563 ENSG00000153574 RPIA RPI|RPIAD ribose 5-phosphate isomerase A protein-coding 132.5-11 chr11 75030214 75030686 + 0.5 NA Intergenic Intergenic 41517 NM_001367867 10825 Hs.191074 NM_006656 ENSG00000162139 NEU3 SIAL3 neuraminidase 3 protein-coding 119.333-30 chr15 67580204 67580577 + 0.5 NA intron (NM_001206804, intron 3 of 21) intron (NM_001206804, intron 3 of 21) 31296 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 173.667-73 chr9 122882800 122883285 + 0.5 NA intron (NM_001100588, intron 5 of 20) intron (NM_001100588, intron 5 of 20) -2723 NR_003071 692206 Hs.693253 NR_003071 ENSG00000212447 SNORD90 HBII-295 small nucleolar RNA, C/D box 90 snoRNA 162.833-35 chr4 173133265 173133768 + 0.5 NA intron (NR_134242, intron 6 of 6) intron (NR_134242, intron 6 of 6) -35295 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 141.333-58 chr20 56418445 56418988 + 0.5 NA intron (NM_001164116, intron 2 of 6) intron (NM_001164116, intron 2 of 6) 6456 NM_020356 57091 Hs.473144 NM_020356 ENSG00000087589 CASS4 C20orf32|CAS4|HEFL|HEPL Cas scaffold protein family member 4 protein-coding 147-59 chr4 71524304 71524644 + 0.5 NA intron (NM_003759, intron 13 of 22) intron (NM_003759, intron 13 of 22) 185421 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 167.167-26 chr14 65308065 65308455 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR 26923 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 128.167-79 chr7 94358535 94359018 + 0.5 NA Intergenic L1PA16|LINE|L1 33416 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 142.5-43 chr2 176972063 176972461 + 0.5 NA Intergenic Intergenic 240149 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 183.333-13 chr11 80048320 80048893 + 0.5 NA Intergenic Intergenic -607576 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 134.833-3 chr1 150888020 150888378 + 0.5 NA intron (NR_148929, intron 1 of 1) Arthur1C|DNA|hAT-Tip100 946 NR_148929 100996521 Hs.208452 NR_148929 CTXND2 - cortexin domain containing 2 ncRNA 113.667-131 chr8 137120288 137120763 + 0.5 NA Intergenic Intergenic 293063 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 201.167-17 chr21 30245508 30246143 + 0.5 NA Intergenic FRAM|SINE|Alu -29728 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 154.667-69 chr8 32319695 32320132 + 0.5 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -120833 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 119.667-76 chr5 33366167 33366613 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -74306 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 127.333-16 chr11 18295199 18295545 + 0.5 NA intron (NM_181507, intron 13 of 22) intron (NM_181507, intron 13 of 22) 26768 NM_007216 11234 Hs.437599 NM_007216 ENSG00000110756 HPS5 AIBP63|BLOC2S2 HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 protein-coding 148.167-87 chr9 27812875 27813282 + 0.5 NA Intergenic L1MD1|LINE|L1 -239212 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 138.5-74 chr7 54476322 54476643 + 0.5 NA Intergenic Intergenic -65843 NM_001301009 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 115.167-25 chr11 82020670 82021215 + 0.5 NA intron (NR_120571, intron 5 of 7) intron (NR_120571, intron 5 of 7) -130106 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 122.333-55 chr2 158839799 158840290 + 0.5 NA Intergenic Intergenic 44727 NM_001017920 92196 Hs.59761 NM_001017920 ENSG00000163331 DAPL1 - death associated protein like 1 protein-coding 156.333-27 chr13 106571261 106571834 + 0.5 NA Intergenic Intergenic -3410 NM_018011 55082 Hs.508644 NM_018011 ENSG00000134884 ARGLU1 - arginine and glutamate rich 1 protein-coding 157.5-48 chr4 128592930 128593442 + 0.5 NA Intergenic L2c|LINE|L2 165170 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 160.667-21 chr12 18111103 18111652 + 0.5 NA Intergenic Intergenic -21184 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 134.667-16 chr10 115702720 115703206 + 0.5 NA intron (NM_207303, intron 26 of 28) L1PA16|LINE|L1 491826 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 114.667-22 chr12 69587945 69588456 + 0.5 NA exon (NM_001198842, exon 6 of 16) exon (NM_001198842, exon 6 of 16) 2311 NM_001198842 10576 Hs.189772 NM_006431 ENSG00000166226 CCT2 99D8.1|CCT-beta|CCTB|HEL-S-100n|PRO1633|TCP-1-beta chaperonin containing TCP1 subunit 2 protein-coding 171.833-28 chr3 42101444 42102016 + 0.5 NA intron (NM_001349247, intron 1 of 16) MER58A|DNA|hAT-Charlie 10373 NM_001042646 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 160.5-55 chr7 78270494 78270862 + 0.5 NA intron (NM_001301128, intron 9 of 20) L1PA7|LINE|L1 -76564 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 134.833-42 chr4 52696787 52697130 + 0.5 NA Intergenic AluSx|SINE|Alu -15436 NR_145130 57291 Hs.744077 NR_024031 ENSG00000226950 DANCR AGU2|ANCR|KIAA0114|SNHG13|lncRNA-ANCR differentiation antagonizing non-protein coding RNA ncRNA 121.5-87 chr5 179922078 179922540 + 0.5 NA Intergenic L1ME1|LINE|L1 -14412 NM_015043 23061 Hs.155829 NM_015043 ENSG00000197226 TBC1D9B GRAMD9B TBC1 domain family member 9B protein-coding 139.167-64 chr7 80421288 80421876 + 0.5 NA Intergenic AluSz|SINE|Alu -47143 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 132.167-4 chr1 63108067 63108514 + 0.5 NA Intergenic Intergenic -95819 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 152.333-39 chr22 28489229 28489824 + 0.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 29657 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 197.167-35 chr3 78826412 78827100 + 0.5 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 192703 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 171.5-20 chr15 40880979 40881411 + 0.5 NA Intergenic AluJb|SINE|Alu -6961 NM_133639 171177 Hs.447901 NM_133639 ENSG00000104140 RHOV ARHV|CHP|WRCH2 ras homolog family member V protein-coding 181.833-4 chr1 184321843 184322619 + 0.5 NA Intergenic L1ME4a|LINE|L1 -64798 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 178-60 chr7 113966077 113966692 + 0.5 NA Intergenic L2c|LINE|L2 -47375 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 133.5-60 chr5 112926701 112927081 + 0.5 NA Intergenic FRAM|SINE|Alu -4664 NM_005669 7905 Hs.429608 NM_005669 ENSG00000129625 REEP5 C5orf18|D5S346|DP1|TB2|YOP1|Yip2e receptor accessory protein 5 protein-coding 134.667-84 chr5 45003275 45003836 + 0.5 NA Intergenic Intergenic 194608 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 160.833-34 chr3 196318959 196319442 + 0.5 NA promoter-TSS (NM_001351628) promoter-TSS (NM_001351628) 868 NR_121665 100874214 Hs.672105 NR_046724 ENSG00000235897 TM4SF19-AS1 - TM4SF19 antisense RNA 1 ncRNA 120.833-44 chr3 62247767 62248171 + 0.5 NA intron (NM_002841, intron 15 of 29) intron (NM_002841, intron 15 of 29) 70978 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 189.5-14 chr14 46482525 46483032 + 0.5 NA intron (NR_102700, intron 1 of 1) intron (NR_102700, intron 1 of 1) 11419 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 121-91 chr8 117878410 117878792 + 0.5 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 42312 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 127-5 chr10 35798332 35798880 + 0.5 NA non-coding (NR_110138, exon 3 of 3) non-coding (NR_110138, exon 3 of 3) 20304 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 122-88 chr8 129950973 129951330 + 0.5 NA intron (NM_001353256, intron 2 of 13) AluSx1|SINE|Alu -11340 NM_001353299 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 201-6 chr1 217444484 217445067 + 0.5 NA intron (NM_018040, intron 9 of 9) intron (NM_018040, intron 9 of 9) 186315 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 322-3 chr12 41376134 41376889 + 0.5 NA intron (NM_001164595, intron 3 of 9) L1MA9|LINE|L1 -61228 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 117.333-52 chr2 215004292 215004704 + 0.5 NA intron (NR_103740, intron 20 of 54) intron (NR_103740, intron 20 of 54) 27588 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 118.333-76 chr3 117500232 117500478 + 0.5 NA Intergenic Intergenic 190570 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 155-36 chr2 104768762 104769191 + 0.5 NA Intergenic Intergenic -11257 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 119-20 chr11 104625361 104625767 + 0.5 NA Intergenic Intergenic -16262 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 133.333-115 chr7 84319967 84320345 + 0.5 NA Intergenic Intergenic -125367 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 142.167-78 chr8 112428958 112429437 + 0.5 NA intron (NM_052900, intron 31 of 68) L1MA8|LINE|L1 -214296 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 189.833-3 chr10 11216861 11217308 + 0.5 NA intron (NM_001326339, intron 2 of 11) intron (NM_001326339, intron 2 of 11) 52054 NM_001025076 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 143.333-23 chr15 57650681 57651132 + 0.5 NA intron (NR_104367, intron 11 of 15) intron (NR_104367, intron 11 of 15) -55615 NM_001018102 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 197.5-34 chr3 70940672 70941162 + 0.5 NA Intergenic L1ME1|LINE|L1 124007 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 124.333-49 chr2 170269242 170269571 + 0.5 NA intron (NM_001083615, intron 7 of 33) intron (NM_001083615, intron 7 of 33) 81537 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 126.667-33 chr19 27394616 27394917 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -398665 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 168.833-39 chr4 46316206 46316758 + 0.5 NA intron (NM_001286827, intron 3 of 9) MER58A|DNA|hAT-Charlie 72897 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 140.5-13 chr11 59936298 59936700 + 0.5 NA Intergenic Intergenic -6380 NR_130719 255649 Hs.722773 NR_130719 OOSP1 - oocyte secreted protein 1 pseudo 127.833-69 chr7 23445258 23445900 + 0.5 NA intron (NM_006547, intron 2 of 14) intron (NM_006547, intron 2 of 14) 24912 NM_006547 10643 Hs.700696 NM_006547 ENSG00000136231 IGF2BP3 CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3 insulin like growth factor 2 mRNA binding protein 3 protein-coding 120.667-9 chr1 158486294 158486739 + 0.5 NA Intergenic Intergenic 6638 NM_001004472 343406 Hs.451913 NM_001004472 ENSG00000198965 OR10R2 OR1-8|OR10R2Q olfactory receptor family 10 subfamily R member 2 protein-coding 135.667-75 chr3 188126869 188127234 + 0.5 NA Intergenic MIR3|SINE|MIR -26847 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 165.167-56 chr8 77037820 77038236 + 0.5 NA Intergenic AluJb|SINE|Alu -36984 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 145.833-19 chr11 133022107 133022574 + 0.5 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -78572 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 182.333-41 chr22 48731297 48731826 + 0.5 NA intron (NM_001082967, intron 3 of 3) Tigger1|DNA|TcMar-Tigger -48734 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 152.667-77 chr7 17136319 17136683 + 0.5 NA Intergenic L1MC3|LINE|L1 -162151 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 137.167-72 chr8 135564752 135565138 + 0.5 NA intron (NM_006558, intron 5 of 8) LTR38A1|LTR|ERV1 107489 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 168.833-9 chr11 115036127 115036755 + 0.5 NA Intergenic HAL1|LINE|L1 -297136 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 169.5-30 chr2 58445403 58445871 + 0.5 NA Intergenic Intergenic -75116 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 115.5-14 chr10 48594326 48594820 + 0.5 NA intron (NM_001347738, intron 2 of 10) LTR16A2|LTR|ERVL 10500 NM_001256024 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 149.167-16 chr14 20110130 20110683 + 0.5 NA Intergenic Intergenic -7062 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 125.167-85 chr8 132994529 132994879 + 0.5 NA intron (NM_003235, intron 35 of 47) intron (NM_003235, intron 35 of 47) 51877 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 133.167-36 chr20 54940691 54941131 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 465318 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 124.167-56 chr21 27279530 27280019 + 0.5 NA Intergenic L1MC4a|LINE|L1 -312686 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 197.167-29 chr2 150860430 150861071 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR 231853 NR_110245 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 138.333-103 chr8 73788747 73789108 + 0.5 NA non-coding (NR_073120, exon 6 of 6) non-coding (NR_073120, exon 6 of 6) -41219 NM_001164384 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 170.333-21 chr13 67406142 67406620 + 0.5 NA Intergenic LTR39|LTR|ERV1 33994 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 116.5-57 chr3 178768555 178769086 + 0.5 NA intron (NR_126560, intron 2 of 7) intron (NR_126560, intron 2 of 7) 91585 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 156.167-29 chr17 44698853 44699370 + 0.5 NA Intergenic AluSx|SINE|Alu -9314 NM_001099225 124808 Hs.579115 NM_144609 ENSG00000180329 CCDC43 - coiled-coil domain containing 43 protein-coding 133.5-25 chr15 85770872 85771174 + 0.5 NA promoter-TSS (NR_031682) promoter-TSS (NR_031682) -445 NR_031682 100302121 NR_031682 ENSG00000221634 MIR1276 MIRN1276|hsa-mir-1276|mir-1276 microRNA 1276 ncRNA 121.833-46 chr3 84373856 84374374 + 0.5 NA Intergenic L1MB5|LINE|L1 495460 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 136.667-85 chr5 147673886 147674245 + 0.5 NA intron (NM_001270934, intron 1 of 20) L2|LINE|L2 108663 NM_001282282 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 149.5-24 chr16 7969402 7969780 + 0.5 NA Intergenic L2a|LINE|L2 620247 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 130.333-22 chr12 6862181 6862744 + 0.5 NA intron (NM_001098536, intron 13 of 19) intron (NM_001098536, intron 13 of 19) -4958 NM_001159287 7167 Hs.524219 NM_000365 ENSG00000111669 TPI1 HEL-S-49|TIM|TPI|TPID triosephosphate isomerase 1 protein-coding 115.167-53 chr2 57119209 57119589 + 0.5 NA Intergenic Intergenic -788252 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 115.833-69 chr6 124750210 124750597 + 0.5 NA intron (NM_001040214, intron 4 of 6) L2c|LINE|L2 -212142 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 197.833-5 chr11 46420976 46421689 + 0.5 NA intron (NM_001267782, intron 16 of 19) intron (NM_001267782, intron 16 of 19) -29664 NM_001366692 1132 Hs.248100 NM_000741 ENSG00000180720 CHRM4 HM4|M4R cholinergic receptor muscarinic 4 protein-coding 132.167-20 chr14 80263625 80263958 + 0.5 NA intron (NR_038355, intron 2 of 8) (AC)n|Simple_repeat|Simple_repeat -32734 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 189-20 chr2 211602712 211603386 + 0.5 NA intron (NM_001042599, intron 19 of 26) AluSc|SINE|Alu 823311 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 218.167-26 chr7 18587557 18588192 + 0.5 NA intron (NM_058176, intron 2 of 22) intron (NM_058176, intron 2 of 22) 78604 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 120.5-88 chr8 124717956 124718264 + 0.5 NA intron (NM_001282971, intron 1 of 14) intron (NM_001282971, intron 1 of 14) 10363 NM_001363299 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 131.333-54 chr2 141862550 141863057 + 0.5 NA intron (NM_018557, intron 1 of 90) Charlie29a|DNA|hAT-Charlie 268898 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 125.167-87 chr9 34227134 34227490 + 0.5 NA intron (NM_001171202, intron 2 of 5) (TTTA)n|Simple_repeat|Simple_repeat 48269 NM_016525 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 218.333-13 chr13 31951851 31952346 + 0.5 NA intron (NR_027062, intron 2 of 3) intron (NR_027062, intron 2 of 3) 79541 NR_103839 100507099 Hs.536364 NR_103839 FRY-AS1 - FRY antisense RNA 1 ncRNA 154-64 chr4 94368575 94369008 + 0.5 NA Intergenic MIR|SINE|MIR -25955 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 207.5-23 chr20 51803768 51804326 + 0.5 NA Intergenic Intergenic -1526 NM_001318031 57167 Hs.517113 NM_020436 ENSG00000101115 SALL4 DRRS|HSAL4|ZNF797 spalt like transcription factor 4 protein-coding 210.5-51 chr9 31720405 31721138 + 0.5 NA Intergenic Intergenic -339281 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 129-100 chr8 132920706 132921175 + 0.5 NA intron (NM_003235, intron 21 of 47) MLT1A|LTR|ERVL-MaLR 53982 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 122.833-58 chr3 81756880 81757182 + 0.5 NA intron (NM_000158, intron 1 of 15) intron (NM_000158, intron 1 of 15) 4614 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 116-7 chr1 217305800 217306306 + 0.5 NA Intergenic MLT2B3|LTR|ERVL -168351 NM_001243511 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 141.667-2 chr1 99359506 99359803 + 0.5 NA Intergenic Intergenic 95362 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 152.167-53 chr4 115036501 115036940 + 0.5 NA intron (NM_022569, intron 2 of 13) intron (NM_022569, intron 2 of 13) 76900 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 168.167-60 chr9 83721503 83722099 + 0.5 NA Intergenic HERVL40-int|LTR|ERVL 13470 NR_135840 105376114 Hs.9589 NR_135839 ENSG00000254473 LOC105376114 - uncharacterized LOC105376114 ncRNA 118.333-104 chr7 32105044 32105507 + 0.5 NA intron (NM_001322059, intron 3 of 17) HAL1|LINE|L1 -33839 NM_001322056 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 156.167-9 chr10 114977804 114978153 + 0.5 NA TTS (NM_139169) TTS (NM_139169) -16679 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 182.667-53 chr7 16804599 16805380 + 0.5 NA promoter-TSS (NM_006408) promoter-TSS (NM_006408) 10 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 159.167-27 chr18 5930910 5931373 + 0.5 NA Intergenic Intergenic -35187 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 138-103 chr8 36804182 36804644 + 0.5 NA intron (NM_001031836, intron 3 of 26) intron (NM_001031836, intron 3 of 26) 20039 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 150-34 chr2 18684608 18685034 + 0.5 NA Intergenic Intergenic -95241 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 158.167-34 chr3 25179220 25179637 + 0.5 NA intron (NM_001290216, intron 4 of 10) intron (NM_001290216, intron 4 of 10) -161374 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 155.833-63 chr6 90195666 90196105 + 0.5 NA intron (NM_021813, intron 4 of 8) intron (NM_021813, intron 4 of 8) 100958 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 116.5-10 chr10 123575119 123575535 + 0.5 NA Intergenic Intergenic -91028 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 206.333-17 chr2 88843709 88844132 + 0.5 NA Intergenic Intergenic 31550 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 148.667-19 chr13 49388731 49389221 + 0.5 NA intron (NM_001079670, intron 3 of 10) intron (NM_001079670, intron 3 of 10) 12566 NM_030925 81617 Hs.87159 NM_030925 ENSG00000102547 CAB39L MO25-BETA|MO2L|bA103J18.3 calcium binding protein 39 like protein-coding 151-46 chr3 60519156 60519569 + 0.5 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 98508 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 171.833-3 chr1 112816448 112816870 + 0.5 NA Intergenic AluSx|SINE|Alu 33984 NR_103746 100996702 Hs.632431 NR_103746 ENSG00000215866 LINC01356 - long intergenic non-protein coding RNA 1356 ncRNA 115.667-87 chr4 100145281 100145697 + 0.5 NA Intergenic MSTD-int|LTR|ERVL-MaLR -44544 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 129.667-101 chr8 52202406 52202814 + 0.5 NA intron (NM_001352863, intron 9 of 27) L2c|LINE|L2 8248 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 130.333-94 chr8 128306539 128306843 + 0.5 NA Intergenic Intergenic 156575 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 123-70 chr4 104300075 104300384 + 0.5 NA Intergenic L1MC3|LINE|L1 -190736 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 141.833-46 chr8 79426881 79427248 + 0.5 NA Intergenic L2|LINE|L2 94876 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 127.833-31 chr17 60554376 60554807 + 0.5 NA Intergenic AluJb|SINE|Alu -9955 NR_126009 388406 Hs.368309 NR_126009 ENSG00000267772 LINC01999 - long intergenic non-protein coding RNA 1999 ncRNA 155-17 chr12 26543347 26543880 + 0.5 NA intron (NM_002223, intron 37 of 56) AluSx1|SINE|Alu 289581 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 117.167-54 chr20 55561461 55561885 + 0.5 NA Intergenic L1PA16|LINE|L1 -134476 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 187.167-43 chr8 87468515 87469125 + 0.5 NA Intergenic L1ME2|LINE|L1 405195 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 131.333-44 chr2 13831659 13832069 + 0.5 NA Intergenic L1PA11|LINE|L1 569094 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 151.167-41 chr5 94112975 94113641 + 0.5 NA Intergenic Intergenic -1609 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 161.667-41 chr2 72878013 72878456 + 0.5 NA Intergenic Intergenic -9174 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase protein-coding 124-10 chr1 235757561 235757918 + 0.5 NA intron (NM_000081, intron 23 of 52) MER3|DNA|hAT-Charlie 95321 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 149.833-43 chr5 149416326 149416702 + 0.5 NA intron (NR_105060, intron 1 of 4) MIRc|SINE|MIR 9669 NR_105059 728264 Hs.519666 NR_027180 CARMN CARMEN|MIR143HG cardiac mesoderm enhancer-associated non-coding RNA ncRNA 190-40 chr3 117993528 117994071 + 0.5 NA Intergenic Intergenic -302874 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 141-34 chr17 58982274 58982696 + 0.5 NA TTS (NM_001320989) TTS (NM_001320989) 124395 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 151.833-29 chr2 139514154 139514546 + 0.5 NA Intergenic Intergenic 617026 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 118.333-21 chr12 32699823 32700183 + 0.5 NA intron (NM_001330380, intron 1 of 18) L1ME3G|LINE|L1 20702 NM_012062 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 114-57 chr2 136058425 136058744 + 0.5 NA Intergenic Intergenic 57651 NM_001008540 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 170.333-65 chr6 150464390 150464840 + 0.5 NA Intergenic Intergenic 95603 NR_134655 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 134-4 chr1 64346715 64347059 + 0.5 NA Intergenic AluJb|SINE|Alu -123242 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 125-3 chr1 81026558 81026965 + 0.5 NA Intergenic L2c|LINE|L2 -279431 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 161.5-40 chr6 38084488 38084990 + 0.5 NA intron (NM_021943, intron 4 of 5) intron (NM_021943, intron 4 of 5) 265012 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 115.667-123 chr9 97329899 97330367 + 0.5 NA intron (NM_001348010, intron 17 of 20) intron (NM_001348010, intron 17 of 20) 22474 NM_020893 100499483 Hs.435629 NM_020893 ENSG00000197816 CCDC180 C9orf174 coiled-coil domain containing 180 protein-coding 130.333 chr1 29524040 29524493 + 0.5 NA Intergenic Intergenic -174152 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 158.167-54 chr9 116697049 116697502 + 0.5 NA intron (NM_001099679, intron 1 of 1) MIR|SINE|MIR 9970 NM_001099679 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|LGMDR8|TATIP tripartite motif containing 32 protein-coding 162.167-53 chr8 113362026 113362573 + 0.5 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) 14853 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 190.5-31 chr2 80303192 80303999 + 0.5 NA exon (NM_178839, exon 2 of 2) exon (NM_178839, exon 2 of 2) 1157 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 131.667-55 chr2 48595224 48595560 + 0.5 NA 3' UTR (NM_001198595, exon 5 of 5) 3' UTR (NM_001198595, exon 5 of 5) 14805 NM_001198594 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 116-60 chr3 59279588 59280001 + 0.5 NA Intergenic Intergenic -229762 NM_001351533 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 152.667-11 chr10 112441412 112441933 + 0.5 NA intron (NM_001363544, intron 4 of 11) intron (NM_001363544, intron 4 of 11) 5242 NM_022494 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 135.167-67 chr3 131605207 131605749 + 0.5 NA intron (NM_130808, intron 7 of 15) intron (NM_130808, intron 7 of 15) -102507 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 113.667-83 chr3 98336201 98336648 + 0.5 NA Intergenic Intergenic -17430 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 143.667-46 chr16 51916958 51917492 + 0.5 NA Intergenic Intergenic 154706 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 138.333-63 chr2 119679569 119680098 + 0.5 NA intron (NM_001105198, intron 1 of 1) intron (NM_001105198, intron 1 of 1) 632 NM_001105199 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 124-55 chr2 132716839 132717268 + 0.5 NA intron (NM_207481, intron 17 of 17) intron (NM_207481, intron 17 of 17) -45527 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 114.5-84 chr7 38142080 38142388 + 0.5 NA Intergenic Intergenic -36011 NM_001363347 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 150.833-45 chr6 36868796 36869316 + 0.5 NA intron (NM_016059, intron 2 of 3) AluJb|SINE|Alu -2788 NM_001286636 221477 Hs.433381 NM_152734 ENSG00000198663 C6orf89 BRAP|PS1TP5TP1 chromosome 6 open reading frame 89 protein-coding 141.167-48 chr21 20343610 20343928 + 0.5 NA Intergenic Intergenic -85084 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 113.833-62 chr4 41064595 41064921 + 0.5 NA intron (NM_001330658, intron 3 of 15) intron (NM_001330658, intron 3 of 15) 149784 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 149-61 chr4 38285660 38286060 + 0.5 NA Intergenic (TTAAAA)n|Simple_repeat|Simple_repeat -81054 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 124.667-36 chr14 72234912 72235435 + 0.5 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -281647 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 171.5-31 chr2 69054785 69055339 + 0.5 NA intron (NM_032208, intron 3 of 17) MIR|SINE|MIR 41918 NM_053034 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 135.833-7 chr11 96481174 96481552 + 0.5 NA intron (NR_047481, intron 1 of 4) intron (NR_047481, intron 1 of 4) 25514 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 127.667-30 chr16 9132588 9132917 + 0.5 NA Intergenic AluSz|SINE|Alu 41108 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 137.667-73 chr4 23287582 23287970 + 0.5 NA Intergenic Tigger2|DNA|TcMar-Tigger 573687 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 146.167-3 chr1 78040513 78041049 + 0.5 NA Intergenic Intergenic -4189 NM_001304725 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 138-92 chr6 120381678 120382112 + 0.5 NA Intergenic Intergenic 366716 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 141-24 chr14 49589992 49590512 + 0.5 NA intron (NM_001351375, intron 1 of 2) AluSx4|SINE|Alu 3672 NR_002715 6029 NR_002715 ENSG00000276168 RN7SL1 7L1a|7SL|RN7SL|RNSRP1 RNA component of signal recognition particle 7SL1 scRNA 153-47 chr6 163780531 163780907 + 0.5 NA Intergenic Intergenic -109235 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 141-20 chr12 128171248 128171696 + 0.5 NA Intergenic MER74B|LTR|ERVL 53255 NR_104648 101927694 Hs.524849 NR_104648 ENSG00000256659 LINC02368 - long intergenic non-protein coding RNA 2368 ncRNA 126.667-12 chr10 28129328 28129787 + 0.5 NA intron (NR_134518, intron 5 of 16) AluSg7|SINE|Alu -56179 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 150.833-57 chr9 24334169 24334729 + 0.5 NA Intergenic Intergenic 211227 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 119.333-42 chr18 63793353 63793699 + 0.5 NA intron (NM_001040147, intron 4 of 7) intron (NM_001040147, intron 4 of 7) 15749 NM_001261830 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 176.167-47 chr8 117552503 117553042 + 0.5 NA Intergenic AluSc|SINE|Alu 32059 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 115.667-17 chr11 34220724 34221246 + 0.5 NA intron (NM_145804, intron 1 of 16) AluSx4|SINE|Alu 115356 NM_001144030 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|Kre33|NET43 N-acetyltransferase 10 protein-coding 153.667-12 chr11 19502694 19503201 + 0.5 NA non-coding (NR_049725, exon 3 of 3) non-coding (NR_049725, exon 3 of 3) 4282 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 160.667-63 chr4 86800789 86801394 + 0.5 NA intron (NM_080685, intron 42 of 47) intron (NM_080685, intron 42 of 47) 48293 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 182.333-14 chr12 7407092 7407571 + 0.5 NA intron (NM_001297650, intron 4 of 19) intron (NM_001297650, intron 4 of 19) 36854 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 126.167-14 chr10 103954986 103955329 + 0.5 NA Intergenic Intergenic -11983 NM_001304743 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 165-5 chr1 244127031 244127667 + 0.5 NA Intergenic Intergenic 74144 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 152.667-37 chr17 31249247 31249853 + 0.5 NA intron (NM_000267, intron 30 of 56) intron (NM_000267, intron 30 of 56) 47689 NM_002544 4974 Hs.113874 NM_002544 ENSG00000126861 OMG OMGP oligodendrocyte myelin glycoprotein protein-coding 125.833-41 chr2 79038782 79039418 + 0.5 NA Intergenic Intergenic 13398 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 165.667-21 chr14 43249706 43250195 + 0.5 NA Intergenic L1MEc|LINE|L1 1257333 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 145-66 chr5 67445612 67446072 + 0.5 NA Intergenic L1M2a|LINE|L1 200947 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 142.333-31 chr14 46985957 46986379 + 0.5 NA intron (NM_001113498, intron 8 of 16) MamGypsy2-I|LTR|Gypsy -334387 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 148-53 chr3 114189623 114190068 + 0.5 NA intron (NM_001282563, intron 1 of 7) AmnSINE1|SINE|5S-Deu-L2 9562 NM_001282563 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 148-75 chr6 152389306 152389765 + 0.5 NA intron (NM_182961, intron 53 of 145) intron (NM_182961, intron 53 of 145) 9005 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 131.333-103 chr8 127718966 127719313 + 0.5 NA intron (NR_117102, intron 1 of 3) intron (NR_117102, intron 1 of 3) 14828 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 117.667-53 chr17 62969617 62969992 + 0.5 NA intron (NM_025185, intron 1 of 25) intron (NM_025185, intron 1 of 25) 3569 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 122.5-79 chr6 38100392 38100698 + 0.5 NA intron (NM_021943, intron 4 of 5) intron (NM_021943, intron 4 of 5) 280818 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 124.667-92 chr5 36415911 36416502 + 0.5 NA Intergenic MIR3|SINE|MIR -114304 NM_001323276 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 120.5-71 chr5 57981554 57982091 + 0.5 NA Intergenic LTR85a|LTR|Gypsy? -82660 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 157.167-13 chr10 30419113 30419542 + 0.5 NA Intergenic Intergenic -14694 NM_001244134 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 131.333-4 chr1 91471867 91472237 + 0.5 NA Intergenic Intergenic -28795 NM_001134419 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 120.667-30 chr12 108283133 108283506 + 0.5 NA Intergenic AluSz6|SINE|Alu 37343 NM_001142345 1240 Hs.197143 NM_004072 ENSG00000174600 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemerin chemokine-like receptor 1 protein-coding 205-31 chr4 73841776 73842196 + 0.5 NA Intergenic AluY|SINE|Alu 5308 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 138.833-8 chr10 9526717 9527149 + 0.5 NA Intergenic Intergenic -231340 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 203.5-3 chr1 145723110 145723779 + 0.5 NA intron (NM_007053, intron 1 of 5) intron (NM_007053, intron 1 of 5) 3945 NR_103845 11126 Hs.488237 NM_007053 ENSG00000117281 CD160 BY55|NK1|NK28 CD160 molecule protein-coding 145.333-79 chr7 15713437 15713815 + 0.5 NA Intergenic L1MC1|LINE|L1 25248 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 165.167-2 chr1 147621320 147622035 + 0.5 NA intron (NM_004326, intron 8 of 9) intron (NM_004326, intron 8 of 9) 48847 NR_136633 51205 Hs.562154 NM_016361 ENSG00000162836 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 198.5 chr1 47650850 47651499 + 0.5 NA Intergenic Intergenic -213857 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 139.167-38 chr2 77943294 77943872 + 0.5 NA intron (NR_110288, intron 1 of 3) MLT1D-int|LTR|ERVL-MaLR 11443 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 150.833-2 chr11 26764285 26764638 + 0.5 NA Intergenic MER41-int|LTR|ERV1 -42401 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 134.333-68 chr2 222524775 222525134 + 0.5 NA exon (NM_001320834, exon 4 of 5) exon (NM_001320834, exon 4 of 5) 100411 NM_152386 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 140.667-92 chr9 76895942 76896278 + 0.5 NA intron (NM_001308048, intron 1 of 17) intron (NM_001308048, intron 1 of 17) 9977 NM_001308048 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 118.667-108 chr7 40222209 40222556 + 0.5 NA intron (NM_024728, intron 6 of 14) LTR78|LTR|ERV1 87406 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 187.333-55 chr3 164490349 164490930 + 0.5 NA Intergenic MIR|SINE|MIR -319083 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 113.333-25 chr11 130809032 130809356 + 0.5 NA Intergenic Intergenic 52916 NR_125383 100507431 Hs.375101 NR_125383 LINC02551 - long intergenic non-protein coding RNA 2551 ncRNA 187.5-43 chr5 128309181 128309725 + 0.5 NA intron (NM_001999, intron 40 of 64) intron (NM_001999, intron 40 of 64) 225687 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 127.5-54 chr5 16168814 16169204 + 0.5 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 10782 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 129.167-18 chr12 1290104 1290513 + 0.5 NA intron (NR_027948, intron 15 of 19) intron (NR_027948, intron 15 of 19) -210183 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 118.667-85 chr4 47453002 47453403 + 0.5 NA exon (NM_017845, exon 4 of 5) exon (NM_017845, exon 4 of 5) 10500 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 179-16 chr16 87064033 87064508 + 0.5 NA TTS (NR_126008) TTS (NR_126008) 6486 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 127.667-103 chr9 91315969 91316384 + 0.5 NA intron (NM_001306190, intron 3 of 8) intron (NM_001306190, intron 3 of 8) 45748 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 218.667-23 chr21 31884445 31885125 + 0.5 NA intron (NM_014586, intron 1 of 10) AluSx|SINE|Alu 11765 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 140.333-21 chr14 20004601 20004993 + 0.5 NA Intergenic Intergenic 2735 NR_145508 390432 NM_001348271 ENSG00000196383 OR4Q2 OR4Q2P olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene) protein-coding 124.5-31 chr2 269083 269578 + 0.5 NA intron (NM_007099, intron 1 of 5) intron (NM_007099, intron 1 of 5) 4383 NM_004300 52 Hs.558296 NM_004300 ENSG00000143727 ACP1 HAAP|LMW-PTP|LMWPTP acid phosphatase 1 protein-coding 159.5-39 chr4 68228810 68229227 + 0.5 NA intron (NM_182502, intron 8 of 9) intron (NM_182502, intron 8 of 9) -10938 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 147.333-52 chr22 45473602 45474003 + 0.5 NA Intergenic L1MEg2|LINE|L1 -29081 NM_006487 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 157.5-8 chr11 23388375 23388770 + 0.5 NA Intergenic L1MC1|LINE|L1 30618 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 125.333-63 chr2 42640015 42640397 + 0.5 NA exon (NM_020744, exon 5 of 14) exon (NM_020744, exon 5 of 14) 71574 NM_001330444 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 166.667-20 chr2 10578620 10579075 + 0.5 NA intron (NR_048552, intron 18 of 19) intron (NR_048552, intron 18 of 19) 111128 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 203.5-23 chr2 239711176 239711953 + 0.5 NA Intergenic Intergenic -51296 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 122.833-40 chr18 22130688 22130992 + 0.5 NA Intergenic L2b|LINE|L2 38128 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 119.333-13 chr10 75974498 75974908 + 0.5 NA intron (NR_131178, intron 3 of 7) MIR|SINE|MIR 191942 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 169-46 chr5 88695794 88696470 + 0.5 NA intron (NR_146284, intron 1 of 3) MIRb|SINE|MIR -5091 NR_152232 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 229.167-2 chr10 11700162 11700768 + 0.5 NA Intergenic Intergenic -41917 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 151.667-58 chr3 111837056 111837510 + 0.5 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) -21897 NM_145753 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 132.5-101 chr8 124988006 124988451 + 0.5 NA Intergenic ERVL-int|LTR|ERVL 9970 NR_134457 105375744 Hs.575534 NR_134457 ENSG00000253513 LOC105375744 - uncharacterized LOC105375744 ncRNA 150-5 chr10 43795008 43795348 + 0.5 NA Intergenic MIRb|SINE|MIR -4761 NR_002726 10151 Hs.632956 NR_002726 HNRNPA3P1 D10S102|FBRNP|HNRPA3|HNRPA3P1 heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 pseudo 113.167-24 chr17 27803313 27803707 + 0.5 NA Intergenic MER34A1|LTR|ERV1 -2981 NM_000625 4843 Hs.709191 NM_000625 ENSG00000007171 NOS2 HEP-NOS|INOS|NOS|NOS2A nitric oxide synthase 2 protein-coding 190.333-38 chr20 32880190 32880971 + 0.5 NA intron (NM_001143967, intron 5 of 26) intron (NM_001143967, intron 5 of 26) 21657 NM_001143967 388795 NM_001143967 ENSG00000215529 EFCAB8 - EF-hand calcium binding domain 8 protein-coding 179.333-46 chr5 127337071 127337594 + 0.5 NA intron (NM_001308121, intron 2 of 13) LTR24|LTR|ERV1 46536 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 113.5-92 chr9 28627447 28627881 + 0.5 NA intron (NM_152570, intron 2 of 6) L1ME2|LINE|L1 91641 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 232.667-9 chr14 83765277 83765848 + 0.5 NA Intergenic MER61E|LTR|ERV1 1122930 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 143.333-11 chr11 79480011 79480363 + 0.5 NA Intergenic Intergenic -39157 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 183.833-25 chr2 128214961 128215481 + 0.5 NA Intergenic Intergenic 103647 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 137-41 chr17 48165583 48166004 + 0.5 NA intron (NM_003726, intron 10 of 12) intron (NM_003726, intron 10 of 12) -9282 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 131.667-16 chr10 110259828 110260271 + 0.5 NA intron (NM_005962, intron 3 of 5) intron (NM_005962, intron 3 of 5) 34053 NM_005962 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 131.5-14 chr11 43040343 43040885 + 0.5 NA Intergenic THE1A-int|LTR|ERVL-MaLR 228755 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 130.833-9 chr10 76655923 76656340 + 0.5 NA Intergenic L1PA16|LINE|L1 -231913 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 151-83 chr9 30500242 30500699 + 0.5 NA Intergenic Intergenic -92016 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 167.333-36 chr2 133918025 133918493 + 0.5 NA Intergenic Intergenic -201676 NM_001371457 136-67 chr5 56389490 56389859 + 0.5 NA Intergenic L1PA14|LINE|L1 92095 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 133.167-37 chr21 18103997 18104348 + 0.5 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -140661 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 114.833-73 chr8 118875886 118876320 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 75782 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 126-54 chr20 43286721 43287221 + 0.5 NA Intergenic L1M7|LINE|L1 -97065 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 123.333-60 chr2 187104891 187105281 + 0.5 NA Intergenic Intergenic -255916 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 123.167-62 chr3 109373110 109373606 + 0.5 NA Intergenic L1ME4b|LINE|L1 -35786 NM_018189 55211 Hs.317659 NM_018189 ENSG00000121570 DPPA4 2410091M23Rik developmental pluripotency associated 4 protein-coding 168-8 chr11 16625657 16626220 + 0.5 NA intron (NM_001367872, intron 2 of 16) MER21C|LTR|ERVL 112539 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 236.5-26 chr6 36608645 36609317 + 0.5 NA Intergenic Intergenic 13531 NR_037491 100500885 NR_037491 ENSG00000263894 MIR3925 - microRNA 3925 ncRNA 136-85 chr9 5371098 5371498 + 0.5 NA intron (NM_018465, intron 3 of 5) intron (NM_018465, intron 3 of 5) -31422 NM_006911 6013 Hs.368996 NM_006911 ENSG00000107018 RLN1 H1|H1RLX|RLXH1|bA12D24.3.1|bA12D24.3.2 relaxin 1 protein-coding 141-65 chr4 59576138 59576634 + 0.5 NA Intergenic Intergenic 562813 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 156.667-29 chr13 95111062 95111466 + 0.5 NA intron (NM_001105515, intron 20 of 20) intron (NM_001105515, intron 20 of 20) -99080 NR_145733 109616987 NR_145733 SNORD13G - small nucleolar RNA, C/D box 13G snoRNA 131.167-37 chr18 58357144 58357461 + 0.5 NA intron (NM_001144965, intron 19 of 30) intron (NM_001144965, intron 19 of 30) -93772 NR_029667 406906 NR_029667 ENSG00000284440 MIR122 MIR122A|MIRN122|MIRN122A|hsa-mir-122|miRNA122|miRNA122A|mir-122 microRNA 122 ncRNA 136.833-35 chr20 57302086 57302464 + 0.5 NA Intergenic AluSx1|SINE|Alu 19316 NR_036219 100422883 NR_036219 ENSG00000266666 MIR4325 - microRNA 4325 ncRNA 173.333-34 chr20 41216776 41217249 + 0.5 NA intron (NM_015035, intron 2 of 3) L1ME4b|LINE|L1 47989 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 190.333-37 chr20 8168712 8169241 + 0.5 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 36710 NM_182734 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 190.5-57 chr9 88308298 88308734 + 0.5 NA Intergenic MER74B|LTR|ERVL -79928 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 132.5-28 chr14 59057384 59057884 + 0.5 NA Intergenic Intergenic -131033 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 144.167-74 chr8 111478848 111479415 + 0.5 NA Intergenic LTR43|LTR|ERV1 102492 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 214.5-7 chr12 57083250 57083823 + 0.5 NA Intergenic MER46C|DNA|TcMar-Tigger -4745 NM_015257 23306 Hs.591040 NM_015257 ENSG00000166881 NEMP1 TMEM194|TMEM194A nuclear envelope integral membrane protein 1 protein-coding 131.667-33 chr14 50903505 50903883 + 0.5 NA intron (NM_001206673, intron 11 of 12) intron (NM_001206673, intron 11 of 12) 31534 NM_181533 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 132.667-24 chr12 99492340 99492786 + 0.5 NA intron (NM_152788, intron 10 of 25) L1PREC2|LINE|L1 -155190 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 141.667-41 chr18 42245262 42245761 + 0.5 NA intron (NR_046454, intron 3 of 6) L1MC4a|LINE|L1 58843 NR_046174 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 175.833-28 chr22 23649287 23649836 + 0.5 NA intron (NR_024448, intron 11 of 11) intron (NR_024448, intron 11 of 11) -17240 NM_016449 51233 Hs.517466 NM_016449 ENSG00000189269 DRICH1 C22orf43|KB-208E9.1 aspartate rich 1 protein-coding 165-64 chr9 34054828 34055242 + 0.5 NA Intergenic AluY|SINE|Alu -5836 NM_001370059 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 150.5-32 chr16 78807957 78808588 + 0.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 708618 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 164.167-52 chr5 97116451 97117167 + 0.5 NA intron (NM_153234, intron 2 of 5) intron (NM_153234, intron 2 of 5) 25802 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 155.5-45 chr5 22854100 22854760 + 0.5 NA Intergenic Intergenic -1086 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 128.833-46 chr2 119662240 119662648 + 0.5 NA Intergenic Intergenic -16723 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 168.833-7 chr10 103324845 103325311 + 0.5 NA intron (NM_001011663, intron 8 of 9) AluSx|SINE|Alu 26062 NM_032154 84108 Hs.335808 NM_032154 ENSG00000156374 PCGF6 MBLR|RNF134 polycomb group ring finger 6 protein-coding 119-51 chr2 42243250 42243681 + 0.5 NA intron (NM_001145076, intron 1 of 21) intron (NM_001145076, intron 1 of 21) -73234 NR_110584 102723824 Hs.639826 NR_110584 LOC102723824 - uncharacterized LOC102723824 ncRNA 132.5-51 chr2 170800851 170801191 + 0.5 NA Intergenic Intergenic -15669 NM_013445 2571 Hs.420036 NM_000817 ENSG00000128683 GAD1 CPSQ1|GAD|SCP glutamate decarboxylase 1 protein-coding 163.833-39 chr3 21209530 21210102 + 0.5 NA Intergenic Intergenic -195910 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 114.833-12 chr11 43361296 43361745 + 0.5 NA intron (NM_001307943, intron 1 of 19) MER47A|DNA|TcMar-Tigger 2600 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 128.167-26 chr14 70492550 70492874 + 0.5 NA Intergenic AluSz6|SINE|Alu -8956 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 145.167-54 chr4 76418847 76419328 + 0.5 NA Intergenic Intergenic -11782 NM_001042784 339965 Hs.529680 NM_178555 ENSG00000163749 CCDC158 - coiled-coil domain containing 158 protein-coding 164.5-42 chr4 764441 764837 + 0.5 NA intron (NM_001317836, intron 10 of 11) intron (NM_001317836, intron 10 of 11) 17209 NR_036512 100129917 Hs.731755 NR_036511 ENSG00000249592 LOC100129917 - uncharacterized LOC100129917 ncRNA 114.333-53 chr17 65057923 65058246 + 0.5 NA Intergenic Intergenic -1344 NM_006572 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 138.667-28 chr14 43178822 43179313 + 0.5 NA Intergenic Intergenic 1328216 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 161.167-49 chr6 72488838 72489296 + 0.5 NA Intergenic Intergenic 122321 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 120.833-72 chr8 126701204 126701527 + 0.5 NA Intergenic L1PA16|LINE|L1 -142887 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 123.333-62 chr2 190536173 190536564 + 0.5 NA Intergenic L1MCc|LINE|L1 -1646 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 156.5-28 chr13 49034782 49035318 + 0.5 NA intron (NM_001079673, intron 2 of 25) intron (NM_001079673, intron 2 of 25) 58388 NR_103528 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 196.167-28 chr5 13892062 13892532 + 0.5 NA intron (NM_001369, intron 16 of 78) MLT1D|LTR|ERVL-MaLR 52183 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 118.833-63 chr5 36165800 36166162 + 0.5 NA intron (NM_032637, intron 3 of 9) intron (NM_032637, intron 3 of 9) 13870 NM_032637 6502 Hs.23348 NM_005983 ENSG00000145604 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase associated protein 2 protein-coding 170.667-48 chr4 74062263 74062739 + 0.5 NA Intergenic Intergenic -7102 NR_026769 10895 Hs.3134 NM_006692 ENSG00000248848 PPBPP2 PPBPL2|SPBPBP pro-platelet basic protein pseudogene 2 pseudo 138.167-17 chr12 102525413 102526014 + 0.5 NA Intergenic MER103C|DNA|hAT-Charlie -45150 NM_000618 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 117-108 chr7 18023256 18023555 + 0.5 NA Intergenic L1M5|LINE|L1 4441 NM_175886 221823 Hs.169284 NM_175886 ENSG00000229937 PRPS1L1 PRPS1|PRPS3|PRPSL|PRS-III phosphoribosyl pyrophosphate synthetase 1 like 1 protein-coding 177-46 chr3 177645855 177646317 + 0.5 NA intron (NR_047568, intron 3 of 3) L2b|LINE|L2 -170779 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 140.333-49 chr3 113416739 113417101 + 0.5 NA intron (NM_001164496, intron 5 of 34) MER5A|DNA|hAT-Charlie 12922 NR_046728 100874029 Hs.599665 NR_046728 ENSG00000243849 CFAP44-AS1 WDR52-AS1 CFAP44 antisense RNA 1 ncRNA 142.167-48 chr20 16769114 16769460 + 0.5 NA Intergenic MSTA1|LTR|ERVL-MaLR 20934 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 113.5-84 chr7 88171638 88171936 + 0.5 NA intron (NM_001324421, intron 26 of 28) intron (NM_001324421, intron 26 of 28) -44873 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 131.667-60 chr2 121785345 121785622 + 0.5 NA Intergenic FLAM_C|SINE|Alu 29832 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 208.167-15 chr2 213549652 213550132 + 0.5 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -208175 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 184.167-51 chrX 13356658 13357199 + 0.5 NA Intergenic Intergenic 21687 NR_045260 100133123 Hs.449499 NR_045260 ENSG00000226985 LINC01203 - long intergenic non-protein coding RNA 1203 ncRNA 129.167-30 chr16 75921535 75922013 + 0.5 NA Intergenic Intergenic -195284 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 172.333-70 chr7 46968471 46969058 + 0.5 NA Intergenic L1M5|LINE|L1 -271642 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 146.167-57 chr5 136407023 136407699 + 0.5 NA Intergenic Intergenic -41885 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 122.333-111 chr8 88378558 88379005 + 0.5 NA Intergenic Intergenic -51298 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 157.167 chr1 23865202 23865706 + 0.5 NA intron (NM_000147, intron 2 of 7) intron (NM_000147, intron 2 of 7) 2915 NM_000147 2517 Hs.370858 NM_000147 ENSG00000179163 FUCA1 FUCA alpha-L-fucosidase 1 protein-coding 123.333-86 chr5 45372227 45372567 + 0.5 NA intron (NM_021072, intron 4 of 7) (TA)n|Simple_repeat|Simple_repeat 323983 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 120.167-7 chr1 226082303 226082755 + 0.5 NA Intergenic AluSx|SINE|Alu -1046 NR_146920 105373113 Hs.149726 NR_146920 LINC01703 lncPARP1 long intergenic non-protein coding RNA 1703 ncRNA 129-41 chr2 63728265 63728575 + 0.5 NA Intergenic MER96|DNA|hAT-Tip100 -112544 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 207.333-17 chr14 51968694 51969458 + 0.5 NA 3' UTR (NM_053064, exon 4 of 4) 3' UTR (NM_053064, exon 4 of 4) -20470 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 123.833-42 chr3 107379664 107380096 + 0.5 NA TTS (NR_126332) TTS (NR_126332) 2279 NR_126332 101929579 Hs.552750 NR_126332 LOC101929579 - uncharacterized LOC101929579 ncRNA 164.333-12 chr11 23337198 23337876 + 0.5 NA Intergenic Intergenic 81653 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 144.333-79 chr7 30345102 30345643 + 0.5 NA intron (NM_147128, intron 2 of 4) intron (NM_147128, intron 2 of 4) -24678 NR_002186 222161 Hs.112423 NR_002186 DKFZP586I1420 - uncharacterized protein DKFZp586I1420 pseudo 133.5-64 chr6 43176653 43177013 + 0.5 NA intron (NM_001292001, intron 4 of 6) intron (NM_001292001, intron 4 of 6) 4437 NM_001292001 6722 Hs.520140 NM_003131 ENSG00000112658 SRF MCM1 serum response factor protein-coding 122.167-36 chr2 103435203 103435534 + 0.5 NA Intergenic Intergenic -450939 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 182.667-33 chr2 137778930 137779335 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 148800 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 172.833-7 chr11 77670065 77670444 + 0.5 NA intron (NM_016578, intron 15 of 15) L2a|LINE|L2 -32448 NM_001311199 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 175.833-48 chr9 86355287 86355722 + 0.5 NA Intergenic MIR|SINE|MIR -1094 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 162.167-2 chr1 98923484 98924070 + 0.5 NA intron (NM_001037317, intron 3 of 5) intron (NM_001037317, intron 3 of 5) -80499 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 130.667-69 chr4 120831934 120832407 + 0.5 NA intron (NM_001300824, intron 3 of 13) THE1C|LTR|ERVL-MaLR 90696 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 125.667-22 chr11 133635264 133635726 + 0.5 NA Intergenic Intergenic -102994 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 116.167-52 chr4 20906367 20906676 + 0.5 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -23811 NM_025221 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 126.333-84 chr5 19489571 19490054 + 0.5 NA intron (NM_001349559, intron 11 of 12) intron (NM_001349559, intron 11 of 12) 396460 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 270.5-7 chr15 80393230 80394033 + 0.5 NA Intergenic (TAGATA)n|Simple_repeat|Simple_repeat -10751 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 145.667-35 chr15 33906893 33907481 + 0.5 NA intron (NM_020371, intron 2 of 5) intron (NM_020371, intron 2 of 5) -61310 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 141.833-42 chr7 50433056 50433682 + 0.5 NA Intergenic L1M6|LINE|L1 16981 NM_001287494 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 142.333-9 chr1 182028322 182028611 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 33246 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 193.167-23 chr2 154778136 154778683 + 0.5 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 79714 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 136.5-26 chr12 87741566 87741910 + 0.5 NA Intergenic Intergenic -27074 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 114.333-72 chr2 171299258 171299560 + 0.5 NA Intergenic MIR|SINE|MIR -68116 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 260.833-8 chr18 4278969 4279876 + 0.5 NA intron (NR_036489, intron 2 of 2) intron (NR_036489, intron 2 of 2) 14820 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 123.834 chr1 85377375 85377987 + 0.5 NA intron (NM_001134445, intron 2 of 6) intron (NM_001134445, intron 2 of 6) 26825 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 132.167-11 chr10 112718708 112719073 + 0.5 NA intron (NM_001365713, intron 8 of 8) intron (NM_001365713, intron 8 of 8) 84720 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 181.167-9 chr16 85013343 85013997 + 0.5 NA Intergenic MER34A1|LTR|ERV1 -2135 NM_017740 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 197.333-3 chr10 17385367 17386069 + 0.5 NA intron (NM_001345961, intron 3 of 8) LTR7|LTR|ERV1 -1218 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 119-41 chr16 82191895 82192293 + 0.5 NA Intergenic Intergenic -21870 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 145.5-40 chr20 12417203 12417867 + 0.5 NA Intergenic Intergenic 499642 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 122.667-89 chr6 62500913 62501281 + 0.5 NA Intergenic Intergenic -214870 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 134.167-82 chr8 92769575 92769907 + 0.5 NA intron (NR_046114, intron 1 of 2) HERVL-int|LTR|ERVL 16319 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 118-91 chr5 25106952 25107236 + 0.5 NA Intergenic Intergenic 83562 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 161.333-40 chr2 62572165 62572666 + 0.5 NA Intergenic Intergenic -66220 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 186.667-81 chr8 144907537 144907989 + 0.5 NA Intergenic L1ME1|LINE|L1 -5586 NM_001363099 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 216.333-41 chr6 38031001 38031627 + 0.5 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 211587 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 165 chr1 47779849 47780310 + 0.5 NA intron (NM_001194986, intron 4 of 6) intron (NM_001194986, intron 4 of 6) 217306 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 193.5-15 chr14 64587259 64587734 + 0.5 NA intron (NM_172365, intron 10 of 11) AluSx|SINE|Alu 37535 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 131.167-73 chr7 74474682 74475035 + 0.5 NA intron (NM_016328, intron 1 of 26) AluJr|SINE|Alu 20952 NM_016328 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 122.833-81 chr7 35460467 35460799 + 0.5 NA Intergenic Intergenic 146778 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 166.333-72 chr7 40452005 40452631 + 0.5 NA intron (NM_024728, intron 10 of 14) intron (NM_024728, intron 10 of 14) 317342 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 153.167-5 chr10 58423567 58423925 + 0.5 NA Intergenic L1PA5|LINE|L1 38336 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 168.833-42 chr4 113699326 113699718 + 0.5 NA intron (NM_001321585, intron 2 of 19) intron (NM_001321585, intron 2 of 19) 62216 NM_001321591 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 124.167-34 chr16 81601657 81601977 + 0.5 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) -9531 NR_106759 102465251 NR_106759 ENSG00000275109 MIR6504 hsa-mir-6504 microRNA 6504 ncRNA 141.167-39 chr2 66379430 66379919 + 0.5 NA Intergenic L1ME3G|LINE|L1 -3632 NR_130931 729348 Hs.723595 NR_130931 ENSG00000232164 LINC01873 - long intergenic non-protein coding RNA 1873 ncRNA 119-11 chr10 10517775 10518087 + 0.5 NA intron (NM_001326317, intron 1 of 14) intron (NM_001326317, intron 1 of 14) 55381 NM_001326319 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 136.5-44 chr19 29579337 29579873 + 0.5 NA Intergenic Intergenic -26678 NM_006627 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 125-74 chr6 53250686 53251215 + 0.5 NA Intergenic Intergenic -26043 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 117.167-71 chr4 84104223 84104507 + 0.5 NA intron (NR_125909, intron 7 of 8) AluJb|SINE|Alu 194804 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 125.833-55 chr21 34931070 34931640 + 0.5 NA intron (NM_001754, intron 2 of 8) (TA)n|Simple_repeat|Simple_repeat -42656 NM_001122607 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 226.333-10 chr14 63008467 63009043 + 0.5 NA intron (NM_139318, intron 2 of 10) intron (NM_139318, intron 2 of 10) 36703 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 147.167-40 chr22 20487973 20488525 + 0.5 NA intron (NM_032775, intron 2 of 6) intron (NM_032775, intron 2 of 6) 7546 NR_033825 84861 Hs.517419 NM_032775 ENSG00000099910 KLHL22 KELCHL kelch like family member 22 protein-coding 144.5-9 chr10 57461784 57462279 + 0.5 NA Intergenic Intergenic -157472 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 133-98 chr8 115740560 115740920 + 0.5 NA Intergenic Intergenic -71765 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 134.167-86 chr9 30132682 30133039 + 0.5 NA Intergenic Intergenic 275594 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 152-53 chr8 132411479 132412033 + 0.5 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 35506 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 131.667-39 chr15 51536472 51536781 + 0.5 NA exon (NM_015263, exon 12 of 43) exon (NM_015263, exon 12 of 43) 86145 NM_001174117 23312 Hs.511386 NM_015263 ENSG00000104093 DMXL2 DFNA71|PEPNS|RC3 Dmx like 2 protein-coding 127.5-63 chr6 131582528 131582966 + 0.5 NA intron (NR_160934, intron 4 of 6) intron (NR_160934, intron 4 of 6) 9521 NM_000045 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 120.333-111 chr7 30239948 30240501 + 0.5 NA Intergenic AluSz|SINE|Alu -44373 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 113.333-69 chr22 44502588 44502973 + 0.5 NA Intergenic L1MEi|LINE|L1 -4547 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 197.167-20 chr18 13960672 13961240 + 0.5 NA Intergenic Intergenic -45249 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 166.333-27 chr16 76924209 76924686 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie 55511 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 125.167-49 chr21 30192968 30193278 + 0.5 NA Intergenic L2a|LINE|L2 18660 NR_038855 266919 Hs.561028 NR_038855 ENSG00000227342 LINC00307 D21S2091E|NCRNA00307 long intergenic non-protein coding RNA 307 ncRNA 133-82 chr6 141859822 141860148 + 0.5 NA Intergenic Intergenic 228814 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 158.5-27 chr17 62665295 62665847 + 0.5 NA intron (NM_006039, intron 2 of 29) intron (NM_006039, intron 2 of 29) 37901 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 139.167-6 chr1 231334460 231334946 + 0.5 NA 3' UTR (NM_175876, exon 1 of 1) 3' UTR (NM_175876, exon 1 of 1) 3149 NM_175876 149371 Hs.356198 NM_175876 ENSG00000116903 EXOC8 EXO84|Exo84p|SEC84 exocyst complex component 8 protein-coding 134-17 chr10 69906813 69907207 + 0.5 NA intron (NM_080801, intron 16 of 38) AluSc|SINE|Alu 105104 NM_001368897 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 132.833-68 chr8 141148860 141149274 + 0.5 NA intron (NM_001362798, intron 5 of 21) AluSp|SINE|Alu 20478 NR_148197 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 118.333-85 chr4 98926164 98926673 + 0.5 NA intron (NM_001331017, intron 1 of 7) AluSp|SINE|Alu 2715 NM_001130678 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 163.167-29 chr4 58108208 58108693 + 0.5 NA Intergenic Intergenic 427878 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 200.833-18 chr2 134084437 134085200 + 0.5 NA Intergenic Intergenic -35117 NM_001371457 152.333-76 chrX 81449665 81450063 + 0.5 NA Intergenic Intergenic 247762 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 119.833 chr1 23813705 23814064 + 0.5 NA intron (NM_000191, intron 5 of 8) AluJo|SINE|Alu 11545 NM_000191 3155 Hs.533444 NM_000191 ENSG00000117305 HMGCL HL 3-hydroxy-3-methylglutaryl-CoA lyase protein-coding 119.333-69 chr4 31752794 31753247 + 0.5 NA Intergenic Intergenic -244359 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 121.5-97 chr7 33876212 33876591 + 0.5 NA Intergenic Intergenic -28514 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 141.833-30 chr4 81626500 81626938 + 0.5 NA Intergenic (ATATATT)n|Simple_repeat|Simple_repeat -154812 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 125.5-38 chr2 26379331 26379839 + 0.5 NA intron (NR_137633, intron 6 of 9) intron (NR_137633, intron 6 of 9) -22335 NM_145038 92749 Hs.393714 NM_145038 ENSG00000157856 DRC1 C2orf39|CCDC164|CILD21 dynein regulatory complex subunit 1 protein-coding 182.667-41 chr3 70767088 70767606 + 0.5 NA Intergenic Intergenic 297577 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 127-29 chr14 42980891 42981496 + 0.5 NA Intergenic Intergenic 1374337 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 147-16 chr12 78983286 78983829 + 0.5 NA intron (NM_001291901, intron 2 of 9) intron (NM_001291901, intron 2 of 9) -62135 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 141.667-107 chr8 15754354 15754755 + 0.5 NA intron (NM_178234, intron 9 of 9) intron (NM_178234, intron 9 of 9) 214291 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 134.833-69 chr8 135856301 135856662 + 0.5 NA Intergenic L1ME3A|LINE|L1 399025 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 140-25 chr14 78333819 78334513 + 0.5 NA intron (NR_073547, intron 4 of 20) L2a|LINE|L2 -69553 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 170-63 chr6 134093430 134093822 + 0.5 NA Intergenic L1M6|LINE|L1 24054 NR_037938 387065 Hs.571061 NR_037938 HMGA1P7 HMGA1L7 high mobility group AT-hook 1 pseudogene 7 pseudo 117.167-99 chrX 49288566 49288853 + 0.5 NA TTS (NM_033215) TTS (NM_033215) -14937 NM_001098413 102724473 NM_001098413 ENSG00000215274 GAGE10 GAGE-10 G antigen 10 protein-coding 164-38 chr20 48318476 48318824 + 0.5 NA Intergenic AluSc|SINE|Alu -41261 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 120.667-83 chr3 155404801 155405102 + 0.5 NA Intergenic Intergenic -80852 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 117.167-56 chr22 21860338 21860649 + 0.5 NA intron (NM_002745, intron 1 of 8) intron (NM_002745, intron 1 of 8) 7187 NM_138957 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 205-10 chr16 63190491 63191119 + 0.5 NA Intergenic Intergenic -1154367 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 122-89 chr8 130263538 130263915 + 0.5 NA intron (NM_001362925, intron 3 of 29) MIR|SINE|MIR 32807 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 116.833-28 chr2 175273637 175274043 + 0.5 NA Intergenic UCON107|DNA|hAT-Tag1 -92130 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 184.667-34 chr3 125159179 125159731 + 0.5 NA intron (NM_001195483, intron 4 of 12) HAL1|LINE|L1 -7903 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 182.667-10 chr11 44126933 44127652 + 0.5 NA intron (NM_207122, intron 6 of 13) MER58A|DNA|hAT-Charlie 31095 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 179.167-24 chr2 24387865 24388451 + 0.5 NA Intergenic LTR8A|LTR|ERV1 -27622 NM_001348181 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 131.5-8 chr11 8637126 8637705 + 0.5 NA intron (NM_014818, intron 10 of 19) intron (NM_014818, intron 10 of 19) 21421 NM_014818 9866 Hs.130836 NM_014818 ENSG00000166436 TRIM66 C11orf29|TIF1D|TIF1DELTA tripartite motif containing 66 protein-coding 122.167-55 chr5 38259652 38260060 + 0.5 NA intron (NM_152403, intron 1 of 21) intron (NM_152403, intron 1 of 21) 1297 NM_001205301 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 235.833-14 chr3 162585708 162586300 + 0.5 NA Intergenic Intergenic 717297 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 133.333-76 chr3 79756452 79756957 + 0.5 NA intron (NM_002941, intron 1 of 30) L1MB4|LINE|L1 11294 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 120.333-6 chr1 74826513 74826802 + 0.5 NA Intergenic HAL1b|LINE|L1 -93249 NM_001134759 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 153.667-16 chr11 108160377 108160805 + 0.5 NA intron (NM_001321307, intron 17 of 17) intron (NM_001321307, intron 17 of 17) 39024 NM_000019 38 Hs.232375 NM_000019 ENSG00000075239 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 226.167-31 chr8 119422811 119423406 + 0.5 NA exon (NM_002514, exon 5 of 5) exon (NM_002514, exon 5 of 5) 6662 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 160.667-22 chr12 51117330 51117717 + 0.5 NA intron (NM_005653, intron 3 of 14) intron (NM_005653, intron 3 of 14) -33927 NM_030809 81566 Hs.524425 NM_030809 ENSG00000110925 CSRNP2 C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12 cysteine and serine rich nuclear protein 2 protein-coding 129.667-99 chr7 115238272 115238618 + 0.5 NA Intergenic Intergenic -7090 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 141.333-57 chr20 53795830 53796355 + 0.5 NA Intergenic L1MB4|LINE|L1 79617 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 129.333-38 chr17 16183545 16183839 + 0.5 NA intron (NM_001190440, intron 2 of 44) L1MA9|LINE|L1 10947 NM_001190438 9611 Hs.462323 NM_006311 ENSG00000141027 NCOR1 N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR nuclear receptor corepressor 1 protein-coding 140.333-78 chr7 32328827 32329390 + 0.5 NA intron (NM_001322059, intron 1 of 17) AluJb|SINE|Alu -29780 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 114.333-10 chr1 189235602 189235947 + 0.5 NA Intergenic L1PBa|LINE|L1 1240236 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 134.5 chr1 27078120 27078453 + 0.5 NA Intergenic AluSp|SINE|Alu -65436 NM_052943 115572 Hs.632378 NM_052943 ENSG00000158246 TENT5B FAM46B terminal nucleotidyltransferase 5B protein-coding 176-48 chr8 89652924 89653560 + 0.5 NA Intergenic L1M2c|LINE|L1 104469 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 135.5-7 chr10 4244257 4244730 + 0.5 NA promoter-TSS (NR_108040) promoter-TSS (NR_108040) -581 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 120.167-6 chr1 218627474 218627792 + 0.5 NA intron (NR_031644, intron 3 of 6) L1MC5|LINE|L1 117538 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 150-30 chr18 65192673 65193073 + 0.5 NA Intergenic Intergenic -557379 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 144.5-52 chr22 29824946 29825296 + 0.5 NA exon (NM_001369923, exon 5 of 21) exon (NM_001369923, exon 5 of 21) 13153 NM_001369924 84164 Hs.731754 NM_032204 ENSG00000100325 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 165.167-28 chr20 59601426 59602068 + 0.5 NA intron (NM_001199505, intron 1 of 12) intron (NM_001199505, intron 1 of 12) -2793 NM_080672 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 191.167-36 chr8 113927867 113928437 + 0.5 NA Intergenic Intergenic -491213 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 213.667-35 chr6 40446598 40447410 + 0.5 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 68667 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 115.5-74 chr4 52694348 52694734 + 0.5 NA Intergenic L1PA15|LINE|L1 -17853 NR_145130 57291 Hs.744077 NR_024031 ENSG00000226950 DANCR AGU2|ANCR|KIAA0114|SNHG13|lncRNA-ANCR differentiation antagonizing non-protein coding RNA ncRNA 147.333-16 chr11 128837005 128837456 + 0.5 NA TTS (NM_153767) TTS (NM_153767) 5239 NM_000220 3758 Hs.527830 NM_000220 ENSG00000151704 KCNJ1 KIR1.1|ROMK|ROMK1 potassium voltage-gated channel subfamily J member 1 protein-coding 121.5-112 chr9 30158022 30158360 + 0.5 NA Intergenic Intergenic 250263 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 115-63 chr5 99292233 99292724 + 0.5 NA Intergenic Intergenic -241512 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 168.333-38 chr3 121372688 121373140 + 0.5 NA intron (NM_001348343, intron 21 of 27) intron (NM_001348343, intron 21 of 27) 173074 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 115.667-109 chr6 145332580 145333011 + 0.5 NA Intergenic L1MD|LINE|L1 354082 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 120.167-8 chr1 242124220 242124740 + 0.5 NA exon (NM_001195811, exon 6 of 10) exon (NM_001195811, exon 6 of 10) -125382 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 169.667-36 chr2 41732925 41733386 + 0.5 NA Intergenic Intergenic -144400 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 136.833-83 chr9 95598122 95598621 + 0.5 NA Intergenic Intergenic -81314 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 146.167-70 chr7 84816511 84817051 + 0.5 NA Intergenic Intergenic 284305 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 219-3 chr11 20988019 20988560 + 0.5 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 318703 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 174-52 chr6 88248249 88248924 + 0.5 NA Intergenic Intergenic -81237 NM_001370546 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 120.333-68 chr21 46438983 46439382 + 0.5 NA intron (NM_001315529, intron 41 of 46) intron (NM_001315529, intron 41 of 46) -19709 NM_015151 23181 Hs.189585 NM_015151 ENSG00000160305 DIP2A C21orf106|DIP2 disco interacting protein 2 homolog A protein-coding 130.833-49 chr4 56348762 56349216 + 0.5 NA TTS (NM_001286672) TTS (NM_001286672) 38502 NM_181806 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 137.833-43 chr5 159167534 159167873 + 0.5 NA intron (NM_001199383, intron 8 of 10) intron (NM_001199383, intron 8 of 10) 39945 NM_001199382 153830 Hs.349306 NM_144726 ENSG00000145860 RNF145 - ring finger protein 145 protein-coding 114.333-56 chr18 75946309 75946750 + 0.5 NA Intergenic Intergenic -176469 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 176.167-28 chr3 52964567 52965247 + 0.5 NA intron (NM_016329, intron 2 of 20) intron (NM_016329, intron 2 of 20) -67359 NM_198563 375346 Hs.744189 NM_198563 ENSG00000213533 STIMATE TMEM110 STIM activating enhancer protein-coding 142.5-35 chr2 6030766 6031212 + 0.5 NA Intergenic L2a|LINE|L2 49011 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 155.5-27 chr19 27851078 27851482 + 0.5 NA intron (NR_146734, intron 1 of 7) intron (NR_146734, intron 1 of 7) -57340 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 195.333-16 chr18 61124087 61124613 + 0.5 NA Intergenic Intergenic -209080 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 179.833-17 chr18 13593559 13594043 + 0.5 NA intron (NM_181482, intron 4 of 5) AluJb|SINE|Alu -17313 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 166.833-24 chr2 65690031 65690633 + 0.5 NA Intergenic L1ME3G|LINE|L1 -257733 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 127.833-74 chr7 135792881 135793174 + 0.5 NA Intergenic Intergenic -44214 NM_001369697 389558 Hs.55200 NM_205855 ENSG00000189320 FAM180A UNQ1940 family with sequence similarity 180 member A protein-coding 134.833-19 chr16 12836239 12836602 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -32533 NM_001099455 55313 Hs.460002 NM_018340 ENSG00000103381 CPPED1 CSTP1 calcineurin like phosphoesterase domain containing 1 protein-coding 138.667-53 chr20 49121103 49121613 + 0.5 NA intron (NM_004602, intron 8 of 13) AluSx1|SINE|Alu 67012 NM_017454 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 141.167-82 chrX 67025103 67025500 + 0.5 NA Intergenic Intergenic -386003 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 161.167-32 chr2 75432182 75432711 + 0.5 NA Intergenic Intergenic -91622 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 187-13 chr15 72116684 72117342 + 0.5 NA 5' UTR (NM_001172109, exon 1 of 3) 5' UTR (NM_001172109, exon 1 of 3) 108 NM_001172110 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 129.167-76 chr7 69384615 69384961 + 0.5 NA Intergenic Intergenic 212836 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 122.833-33 chr15 96116712 96117058 + 0.5 NA intron (NR_158193, intron 4 of 7) intron (NR_158193, intron 4 of 7) 10956 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 166-59 chr7 4001378 4001732 + 0.5 NA intron (NM_152744, intron 14 of 44) intron (NM_152744, intron 14 of 44) -128130 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 141.333-61 chr3 152340798 152341194 + 0.5 NA promoter-TSS (NR_132656) promoter-TSS (NR_132656) -6 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 134.667-10 chr10 54722113 54722451 + 0.5 NA intron (NM_001354404, intron 4 of 34) L1PB4|LINE|L1 78949 NM_001142770 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 116.167-30 chr17 63718924 63719394 + 0.5 NA intron (NM_153335, intron 2 of 8) intron (NM_153335, intron 2 of 8) 18821 NR_046273 729683 Hs.534931 NR_046273 LOC729683 - uncharacterized LOC729683 ncRNA 115.667-39 chr16 20800435 20800992 + 0.5 NA intron (NM_080663, intron 5 of 10) intron (NM_080663, intron 5 of 10) 5759 NM_080663 112479 Hs.248437 NM_080663 ENSG00000196678 ERI2 EXOD1|ZGRF5 ERI1 exoribonuclease family member 2 protein-coding 156.833-67 chrX 152362602 152363047 + 0.5 NA intron (NM_000808, intron 2 of 9) L2|LINE|L2 29475 NR_029521 406897 NR_029521 ENSG00000207957 MIR105-1 MIRN105-1|mir-105-1 microRNA 105-1 ncRNA 119.833-17 chr10 48219999 48220421 + 0.5 NA intron (NM_001018071, intron 12 of 28) L1PB1|LINE|L1 31547 NM_001318191 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 130.5-32 chr17 21291977 21292489 + 0.5 NA intron (NM_002756, intron 1 of 11) intron (NM_002756, intron 1 of 11) 4197 NM_002756 5606 Hs.514012 NM_002756 ENSG00000034152 MAP2K3 MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 mitogen-activated protein kinase kinase 3 protein-coding 194-29 chr2 11778054 11778699 + 0.5 NA intron (NM_001349203, intron 6 of 20) intron (NM_001349203, intron 6 of 20) 10932 NR_036071 100422862 NR_036071 ENSG00000265056 MIR548S - microRNA 548s ncRNA 174.833-35 chr4 72559774 72560159 + 0.5 NA intron (NM_014243, intron 2 of 21) L1PA10|LINE|L1 9255 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 141.667-112 chr8 135132228 135132762 + 0.5 NA Intergenic Intergenic -101636 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 157.5-62 chr7 27462171 27462543 + 0.5 NA Intergenic Intergenic -153617 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 143.667-90 chr5 98855963 98856540 + 0.5 NA non-coding (NR_157078, exon 37 of 37) non-coding (NR_157078, exon 37 of 37) 70283 NM_001270 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 116.667-7 chr1 200314659 200314997 + 0.5 NA Intergenic Intergenic 58964 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 185.167-33 chr4 111775029 111775516 + 0.5 NA Intergenic Intergenic -370182 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 138-76 chr4 58279763 58280147 + 0.5 NA Intergenic Intergenic 256373 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 118-102 chr6 39157623 39157963 + 0.5 NA Intergenic Intergenic -42607 NM_018322 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 154-43 chr2 160211930 160212290 + 0.5 NA Intergenic Intergenic -11797 NM_001282354 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 165-16 chr12 103120877 103121410 + 0.5 NA Intergenic Intergenic -30699 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 181.833-17 chr15 66759155 66759669 + 0.5 NA intron (NR_027654, intron 4 of 4) L1PB3|LINE|L1 57176 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 143-23 chr14 85725770 85726131 + 0.5 NA Intergenic Intergenic 192601 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 126.333-3 chr1 111792757 111793066 + 0.5 NA intron (NM_172198, intron 2 of 6) (TA)n|Simple_repeat|Simple_repeat 37010 NM_007204 11218 Hs.591405 NM_007204 ENSG00000064703 DDX20 DP103|GEMIN3 DEAD-box helicase 20 protein-coding 113.833-74 chr5 141548947 141549257 + 0.5 NA intron (NM_005219, intron 17 of 27) L1MC4|LINE|L1 -9209 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 182.667-32 chr2 114711722 114712199 + 0.5 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 121588 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 119.333-63 chr22 24571590 24571856 + 0.5 NA intron (NM_001278656, intron 3 of 3) AluSx|SINE|Alu -12027 NM_013430 2678 Hs.595809 NM_005265 ENSG00000100031 GGT1 CD224|D22S672|D22S732|GGT|GGT 1|GGTD|GTG gamma-glutamyltransferase 1 protein-coding 133.5-22 chr14 42642737 42643293 + 0.5 NA Intergenic L1MB3|LINE|L1 1036159 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 166.333-53 chr3 194909103 194909708 + 0.5 NA Intergenic Intergenic -140696 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 192-52 chr8 85514130 85514573 + 0.5 NA Intergenic Tigger9a|DNA|TcMar-Tigger -49436 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 178.333-25 chr2 141654274 141654678 + 0.5 NA intron (NM_018557, intron 2 of 90) MLT1K|LTR|ERVL-MaLR 477225 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 188.333-36 chr3 88113769 88114346 + 0.5 NA intron (NM_001350135, intron 3 of 6) L2a|LINE|L2 35809 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 151.667-22 chr14 35631021 35631389 + 0.5 NA intron (NM_014990, intron 32 of 40) MIRb|SINE|MIR 97041 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 115.333-47 chr2 8415911 8416165 + 0.5 NA Intergenic Intergenic -87619 NR_034135 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 132.833-71 chr9 131330029 131330457 + 0.5 NA Intergenic AluJb|SINE|Alu 40520 NM_032728 84814 Hs.134292 NM_032728 ENSG00000160539 PLPP7 C9orf67|NET39|PPAPDC3 phospholipid phosphatase 7 (inactive) protein-coding 114.833-40 chr20 51020661 51021196 + 0.5 NA intron (NM_002237, intron 1 of 2) intron (NM_002237, intron 1 of 2) 2179 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 142-42 chr2 38497974 38498323 + 0.5 NA intron (NR_110259, intron 1 of 4) intron (NR_110259, intron 1 of 4) 17592 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 177.5-10 chr1 199238032 199238463 + 0.5 NA intron (NR_147896, intron 3 of 3) L1MB4|LINE|L1 89649 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 127.667-33 chr18 1881446 1881769 + 0.5 NA Intergenic Intergenic -521978 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 146.5-37 chr17 71109771 71110333 + 0.5 NA intron (NR_104152, intron 3 of 3) intron (NR_104152, intron 3 of 3) 92127 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 125.667-13 chr10 44779861 44780247 + 0.5 NA Intergenic Intergenic -131262 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 188.667-2 chr1 164992656 164993476 + 0.5 NA Intergenic Intergenic -218425 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 171.167-57 chr8 91975845 91976233 + 0.5 NA intron (NM_004349, intron 8 of 10) intron (NM_004349, intron 8 of 10) 41641 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 146.667-38 chr15 97029961 97030506 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL 246798 NR_158223 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 168.167-7 chr10 55631231 55631614 + 0.5 NA Intergenic CpG -3480 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 132.5-100 chr8 124934554 124935114 + 0.5 NA Intergenic MER11B|LTR|ERVK -7174 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 113.333-44 chr16 61290804 61291084 + 0.5 NA Intergenic Intergenic -235178 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 173-51 chr7 8022301 8022696 + 0.5 NA exon (NM_138426, exon 3 of 8) exon (NM_138426, exon 3 of 8) 53702 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 121.333-71 chr3 183797541 183797784 + 0.5 NA intron (NM_001351369, intron 21 of 30) AluSx|SINE|Alu 12789 NR_046727 100874113 NR_046727 YEATS2-AS1 - YEATS2 antisense RNA 1 ncRNA 132.5-18 chr12 57122381 57122758 + 0.5 NA Intergenic L1M3c|LINE|L1 -5914 NM_002332 4035 Hs.162757 NM_002332 ENSG00000123384 LRP1 A2MR|APOER|APR|CD91|IGFBP-3R|IGFBP3R|IGFBP3R1|KPA|LRP|LRP1A|TGFBR5 LDL receptor related protein 1 protein-coding 140.667-11 chr10 99662820 99663419 + 0.5 NA intron (NM_001349962, intron 4 of 13) L1MEc|LINE|L1 3490 NM_001349963 57089 Hs.28326 NM_020354 ENSG00000198018 ENTPD7 LALP1 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding 191-16 chr16 83388332 83388963 + 0.5 NA intron (NM_001220489, intron 5 of 12) MER102c|DNA|hAT-Charlie -119699 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 189.667-17 chr14 52779201 52779716 + 0.5 NA intron (NM_198066, intron 5 of 5) AluJr|SINE|Alu 12149 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 117.333-43 chr2 3942131 3942478 + 0.5 NA Intergenic Intergenic 31728 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 117.667-60 chr2 44903537 44903878 + 0.5 NA Intergenic Intergenic 35181 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 171.5-10 chr12 15957800 15958312 + 0.5 NA intron (NM_015954, intron 2 of 8) intron (NM_015954, intron 2 of 8) 46724 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 155-67 chr5 148402844 148403323 + 0.5 NA intron (NM_001271723, intron 5 of 20) intron (NM_001271723, intron 5 of 20) 19125 NM_205836 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 132.667-21 chr12 46434865 46435238 + 0.5 NA intron (NR_125381, intron 2 of 2) L1ME4a|LINE|L1 50944 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 139.667-5 chr1 98986116 98986649 + 0.5 NA intron (NM_001037317, intron 1 of 5) MER31-int|LTR|ERV1 -17894 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 143.5-8 chr11 23606606 23607053 + 0.5 NA Intergenic L1M4b|LINE|L1 -187639 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 142.667-80 chr5 41855081 41855402 + 0.5 NA intron (NR_157114, intron 3 of 15) L1ME3A|LINE|L1 -11584 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 133-59 chr3 111548565 111548977 + 0.5 NA intron (NM_001318889, intron 2 of 7) intron (NM_001318889, intron 2 of 7) 6574 NM_001318889 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 142-26 chr12 31383394 31383865 + 0.5 NA 3' UTR (NM_001308339, exon 23 of 23) 3' UTR (NM_001308339, exon 23 of 23) -14328 NR_146469 101929027 Hs.266041 NR_146469 ENSG00000256232 LINC02387 - long intergenic non-protein coding RNA 2387 ncRNA 144.167-31 chr17 68448856 68449277 + 0.5 NA intron (NM_001320772, intron 2 of 11) intron (NM_001320772, intron 2 of 11) 8430 NM_017983 55062 Hs.463964 NM_017983 ENSG00000070540 WIPI1 ATG18|ATG18A|WIPI49 WD repeat domain, phosphoinositide interacting 1 protein-coding 132.5-10 chr10 120050521 120050936 + 0.5 NA Intergenic L1M5|LINE|L1 92215 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 148.833-13 chr12 88763416 88763815 + 0.5 NA Intergenic Intergenic -183142 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 134-42 chr14 58146096 58146458 + 0.5 NA intron (NM_001320173, intron 1 of 4) intron (NM_001320173, intron 1 of 4) 5936 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 209.833-26 chr8 53274363 53274993 + 0.5 NA Intergenic Intergenic -22981 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 131.833-66 chr7 132953716 132954252 + 0.5 NA intron (NM_001317177, intron 4 of 8) L2b|LINE|L2 80931 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 136.667-38 chr2 35267277 35267687 + 0.5 NA Intergenic L1MA6|LINE|L1 -203923 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 234.5-35 chrX 144478989 144479703 + 0.5 NA Intergenic Intergenic 595275 NM_001012989 389898 Hs.585177 NM_001012989 ENSG00000276380 UBE2NL Li174 ubiquitin conjugating enzyme E2 N like (gene/pseudogene) protein-coding 137-67 chr3 33916749 33917246 + 0.5 NA Intergenic Intergenic 118367 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 158.333-18 chr12 14128179 14128653 + 0.5 NA Intergenic MSTB1|LTR|ERVL-MaLR -148060 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 125.333-58 chr17 62999661 63000120 + 0.5 NA intron (NM_025185, intron 1 of 25) L1PA15|LINE|L1 33655 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 164-25 chr17 69305686 69306282 + 0.5 NA intron (NM_018672, intron 5 of 37) intron (NM_018672, intron 5 of 37) 9649 NM_018672 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 151-85 chr9 111780792 111781207 + 0.5 NA non-coding (NR_109816, exon 4 of 27) non-coding (NR_109816, exon 4 of 27) 2494 NM_173521 158401 Hs.428209 NM_173521 ENSG00000165181 SHOC1 C9orf84|ZIP2|ZIP2H shortage in chiasmata 1 protein-coding 168.667-58 chr3 114846837 114847423 + 0.5 NA intron (NM_001348805, intron 4 of 10) MARNA|DNA|TcMar-Mariner -25903 NR_126422 104413890 Hs.612732 NR_126422 ENSG00000239946 ZBTB20-AS3 - ZBTB20 antisense RNA 3 ncRNA 160-69 chr8 59250417 59250912 + 0.5 NA Intergenic L1MA4A|LINE|L1 131454 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 136.833-9 chr11 48710488 48710830 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 221866 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 134.667-60 chr22 25094292 25094895 + 0.5 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) 18099 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 128-24 chr13 26042530 26042935 + 0.5 NA Intergenic Intergenic 8328 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 163-50 chr5 168733462 168733952 + 0.5 NA intron (NM_003062, intron 20 of 35) L1PA8|LINE|L1 26780 NR_130737 101927969 Hs.661903 NR_130737 LOC101927969 - uncharacterized LOC101927969 ncRNA 155-71 chr7 16921222 16921818 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity -39537 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 142.833-46 chr3 154680737 154681246 + 0.5 NA Intergenic L3|LINE|CR1 -250801 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 186.667-67 chr5 28069303 28069820 + 0.5 NA Intergenic Intergenic 218104 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 151.167-53 chr8 75482724 75483170 + 0.5 NA intron (NM_001330561, intron 1 of 11) intron (NM_001330561, intron 1 of 11) -57021 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 142-77 chr5 108948878 108949390 + 0.5 NA intron (NR_146155, intron 11 of 19) intron (NR_146155, intron 11 of 19) 24528 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 139.833-71 chr7 77639442 77639741 + 0.5 NA 3' UTR (NM_002835, exon 18 of 18) 3' UTR (NM_002835, exon 18 of 18) 56674 NR_134251 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 119.833-79 chr7 78055323 78055691 + 0.5 NA intron (NM_001301128, intron 20 of 20) intron (NM_001301128, intron 20 of 20) 215377 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 136.167-42 chr2 148103420 148103914 + 0.5 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -82063 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 225.5-19 chr14 69503093 69503590 + 0.5 NA intron (NM_001161498, intron 6 of 12) intron (NM_001161498, intron 6 of 12) 18613 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 187.167-33 chr5 146606744 146607157 + 0.5 NA intron (NM_181678, intron 8 of 10) intron (NM_181678, intron 8 of 10) -90837 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 138.333-90 chr5 151081989 151082497 + 0.5 NA intron (NM_001252390, intron 1 of 17) intron (NM_001252390, intron 1 of 17) -1159 NM_001252385 10318 Hs.355141 NM_006058 ENSG00000145901 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 156.333-87 chr8 75227219 75227806 + 0.5 NA intron (NR_103849, intron 1 of 1) intron (NR_103849, intron 1 of 1) 50969 NR_103850 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 130.833-8 chr10 72631684 72632121 + 0.5 NA Intergenic AluSc|SINE|Alu -5711 NM_001363513 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 139.833-83 chr9 91743817 91744405 + 0.5 NA intron (NM_001318204, intron 4 of 7) L2a|LINE|L2 -107766 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 125.833-26 chr15 92885996 92886482 + 0.5 NA non-coding (NR_037600, exon 3 of 5) non-coding (NR_037600, exon 3 of 5) 2943 NR_037602 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA 147.667-51 chr4 46691015 46691370 + 0.5 NA Intergenic L1ME3G|LINE|L1 218053 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 129-81 chr6 36892594 36893099 + 0.5 NA intron (NM_152734, intron 1 of 7) intron (NM_152734, intron 1 of 7) 6894 NM_001286635 221477 Hs.433381 NM_152734 ENSG00000198663 C6orf89 BRAP|PS1TP5TP1 chromosome 6 open reading frame 89 protein-coding 121.833-19 chr15 96980746 96981068 + 0.5 NA Intergenic Intergenic 197472 NR_158223 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 128.667-56 chr17 70587662 70588097 + 0.5 NA Intergenic Intergenic 418344 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 125.167-72 chr7 18994860 18995381 + 0.5 NA intron (NM_001321868, intron 25 of 25) MIRc|SINE|MIR 122516 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 138.833-73 chr6 25688869 25689194 + 0.5 NA intron (NM_006998, intron 7 of 10) intron (NM_006998, intron 7 of 10) 36816 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 138.667-112 chr9 36717117 36717484 + 0.5 NA Intergenic MIRb|SINE|MIR 106299 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 145.667-53 chr20 18000706 18001207 + 0.5 NA Intergenic L2|LINE|L2 31938 NM_001310338 92667 Hs.320823 NM_052865 ENSG00000125871 MGME1 C20orf72|DDK1|MTDPS11|bA504H3.4 mitochondrial genome maintenance exonuclease 1 protein-coding 170.167-2 chr1 240614543 240615198 + 0.5 NA Intergenic Intergenic -2715 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 152.833-23 chr18 1942668 1943031 + 0.5 NA Intergenic MSTB-int|LTR|ERVL-MaLR -583220 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 135.167-56 chr2 223004565 223004977 + 0.5 NA Intergenic Intergenic -47159 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 147.833-11 chr11 44067860 44068239 + 0.5 NA intron (NM_032592, intron 2 of 14) intron (NM_032592, intron 2 of 14) 1779 NM_032592 84680 Hs.126706 NM_032592 ENSG00000110455 ACCS ACS|PHACS 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) protein-coding 156.833-59 chr8 122813765 122814310 + 0.5 NA intron (NM_001362797, intron 1 of 4) MIRc|SINE|MIR 32382 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 223.667-17 chr2 149291136 149291988 + 0.5 NA Intergenic Intergenic -38423 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 125.667-61 chr2 103407939 103408452 + 0.5 NA Intergenic Intergenic -423766 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 121.333-56 chr20 24106986 24107306 + 0.5 NA Intergenic Intergenic -92621 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 133.333-49 chr2 26732933 26733226 + 0.5 NA 3' UTR (NM_002246, exon 2 of 2) 3' UTR (NM_002246, exon 2 of 2) -31205 NM_017877 54978 Hs.1594 NM_017877 ENSG00000213699 SLC35F6 ANT2BP|C2orf18|TANGO9 solute carrier family 35 member F6 protein-coding 156.167-58 chr7 82241923 82242313 + 0.5 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 201659 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 155.667-66 chr5 156013741 156014266 + 0.5 NA Intergenic Intergenic -312754 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 170.833-2 chr1 180538837 180539433 + 0.5 NA Intergenic L2a|LINE|L2 -19839 NR_125716 148756 NR_125716 ENSG00000236719 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 160.667-69 chr5 152110005 152110619 + 0.5 NA intron (NR_109876, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 151414 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 162-31 chr18 67061755 67062254 + 0.5 NA Intergenic Intergenic -19580 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 116.333-56 chr21 26614600 26614995 + 0.5 NA Intergenic Intergenic -41511 NR_135472 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 145.167-15 chr11 80142852 80143306 + 0.5 NA Intergenic L2c|LINE|L2 619724 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 135-43 chr2 184127952 184128453 + 0.5 NA Intergenic Intergenic -250773 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 114.333-25 chr12 43236951 43237239 + 0.5 NA Intergenic MIRb|SINE|MIR 81780 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 125.167-53 chr3 36762067 36762366 + 0.5 NA Intergenic MER91A|DNA|hAT-Tip100 -22355 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 127.333-76 chr3 42135450 42135762 + 0.5 NA intron (NM_001349247, intron 2 of 16) intron (NM_001349247, intron 2 of 16) -13629 NM_001265610 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 119.667-3 chr1 162538498 162539040 + 0.5 NA Intergenic Intergenic -22671 NM_001324117 6675 Hs.492859 NM_003115 ENSG00000117143 UAP1 AGX|AGX1|AGX2|SPAG2 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding 115.833-33 chr2 49595192 49595450 + 0.5 NA Intergenic AluSx3|SINE|Alu 378882 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 145.667-29 chr14 56247757 56248205 + 0.5 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 129570 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 256-18 chr7 25126253 25126950 + 0.5 NA Intergenic L1M1|LINE|L1 -1240 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 115.333-80 chr5 15960065 15960360 + 0.5 NA Intergenic Intergenic 25030 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 118-121 chr8 131451615 131452032 + 0.5 NA Intergenic L1PA7|LINE|L1 -410914 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 129.167-65 chr5 146783692 146784113 + 0.5 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 94883 NR_073526 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 118-90 chr5 11467679 11467995 + 0.5 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 121080 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 129.167-54 chr4 94966302 94966659 + 0.5 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -29752 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 143.333-56 chr3 51991318 51991730 + 0.5 NA Intergenic LTR12C|LTR|ERV1 4371 NM_000992 6159 Hs.425125 NM_000992 ENSG00000162244 RPL29 HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370 ribosomal protein L29 protein-coding 169.167-39 chr7 45220982 45221702 + 0.5 NA Intergenic Intergenic 63551 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 177.833-34 chr5 50783560 50783978 + 0.5 NA intron (NM_024615, intron 9 of 25) intron (NM_024615, intron 9 of 25) 116355 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 139.667-4 chr1 89443570 89444101 + 0.5 NA Intergenic AluSq4|SINE|Alu 36156 NR_003133 400759 Hs.661968 NR_003133 ENSG00000225492 GBP1P1 - guanylate binding protein 1 pseudogene 1 pseudo 161.5-46 chr7 33986000 33986458 + 0.5 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 80690 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 189 chr1 160627013 160627508 + 0.5 NA intron (NM_001330754, intron 3 of 7) MIRb|SINE|MIR 19784 NR_104401 6504 Hs.523660 NM_003037 ENSG00000117090 SLAMF1 CD150|CDw150|SLAM signaling lymphocytic activation molecule family member 1 protein-coding 144.833-43 chr22 39714633 39714987 + 0.5 NA Intergenic Intergenic 144057 NM_001003406 8911 Hs.125116 NM_021096 ENSG00000100346 CACNA1I Cav3.3|ca(v)3.3 calcium voltage-gated channel subunit alpha1 I protein-coding 128.833-73 chr5 101388644 101389136 + 0.5 NA Intergenic Intergenic -485608 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 150.667-70 chr4 53445283 53445603 + 0.5 NA intron (NM_001134938, intron 12 of 14) MER34B|LTR|ERV1 -54634 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 124.833-56 chr22 38215932 38216358 + 0.5 NA 3' UTR (NM_012323, exon 3 of 3) 3' UTR (NM_012323, exon 3 of 3) 8575 NR_132774 106635525 NR_132774 SNORA92 - small nucleolar RNA, H/ACA box 92 snoRNA 209.833-23 chr6 69071304 69072033 + 0.5 NA intron (NM_001704, intron 16 of 31) intron (NM_001704, intron 16 of 31) 436386 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 131.5-49 chr3 62078258 62078677 + 0.5 NA intron (NM_002841, intron 5 of 29) intron (NM_002841, intron 5 of 29) 240480 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 128.667-46 chr15 74551051 74551669 + 0.5 NA intron (NM_001307939, intron 2 of 8) intron (NM_001307939, intron 2 of 8) 10140 NM_006465 10620 Hs.647642 NM_006465 ENSG00000179361 ARID3B BDP|DRIL2 AT-rich interaction domain 3B protein-coding 153.833-51 chr5 61695660 61696049 + 0.5 NA intron (NR_109910, intron 3 of 7) L1MD2|LINE|L1 2578 NR_109910 101928651 Hs.662309 NR_109910 ENSG00000248529 LOC101928651 - uncharacterized LOC101928651 ncRNA 114.667-28 chr14 49423394 49423735 + 0.5 NA Intergenic Intergenic 162816 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 120.833-77 chr9 72401198 72401694 + 0.5 NA Intergenic Intergenic -36238 NM_001102420 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 130.167-65 chr6 52886646 52887015 + 0.5 NA Intergenic Intergenic 22868 NM_001363542 2940 Hs.102484 NM_000847 ENSG00000174156 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 173.167-11 chr12 81332925 81333551 + 0.5 NA intron (NM_001282536, intron 18 of 29) L3|LINE|CR1 36131 NM_001220479 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 150.833-34 chr4 98313663 98313964 + 0.5 NA intron (NM_021159, intron 2 of 14) AluJb|SINE|Alu 52429 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 114.5-35 chr15 70239910 70240429 + 0.5 NA Intergenic Intergenic -142252 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 159.667-49 chr2 65098740 65099184 + 0.5 NA intron (NM_015543, intron 2 of 3) AluSz6|SINE|Alu 31144 NM_004161 5861 Hs.310645 NM_004161 ENSG00000138069 RAB1A RAB1|YPT1 RAB1A, member RAS oncogene family protein-coding 144.333-41 chr17 76599508 76599972 + 0.5 NA Intergenic AluSq2|SINE|Alu -13880 NM_006456 10610 Hs.592105 NM_006456 ENSG00000070731 ST6GALNAC2 SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 protein-coding 193.5-4 chr10 43679582 43680066 + 0.5 NA Intergenic Intergenic -30943 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 156-44 chr2 180141592 180141995 + 0.5 NA Intergenic L2c|LINE|L2 -134496 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 129.167-45 chr20 12572115 12572594 + 0.5 NA Intergenic Intergenic 364609 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 147-81 chr7 66930111 66930858 + 0.5 NA intron (NM_017994, intron 1 of 6) L2a|LINE|L2 9259 NM_017994 55069 Hs.488478 NM_017994 ENSG00000106609 TMEM248 C7orf42 transmembrane protein 248 protein-coding 166.667-66 chr8 122883978 122884781 + 0.5 NA intron (NM_001362797, intron 3 of 4) Tigger9b|DNA|TcMar-Tigger 102724 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 167-22 chr13 37814468 37814838 + 0.5 NA intron (NM_003306, intron 1 of 10) L1MB7|LINE|L1 55772 NM_001354799 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 127.167-80 chr6 164637228 164637740 + 0.5 NA Intergenic L1M5|LINE|L1 184579 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 170.833-50 chr9 32481122 32481702 + 0.5 NA exon (NM_014314, exon 11 of 18) exon (NM_014314, exon 11 of 18) 44784 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIG1|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 122.333-2 chr1 52168493 52168866 + 0.5 NA intron (NM_007324, intron 1 of 17) AluJo|SINE|Alu 26585 NM_004799 9372 Hs.532345 NM_004799 ENSG00000157077 ZFYVE9 MADHIP|NSP|PPP1R173|SARA|SMADIP zinc finger FYVE-type containing 9 protein-coding 173.667-13 chr12 81169786 81170263 + 0.5 NA intron (NM_024560, intron 7 of 15) intron (NM_024560, intron 7 of 15) 11636 NR_039848 100616133 NR_039848 ENSG00000265227 MIR4699 - microRNA 4699 ncRNA 217.833-26 chr8 102456083 102456962 + 0.5 NA Intergenic Charlie24|DNA|hAT-Charlie -43822 NM_015902 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 164.167-18 chr14 45666369 45666948 + 0.5 NA Intergenic L1MA4|LINE|L1 48944 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 164.833-23 chr2 99992772 99993391 + 0.5 NA intron (NM_001025108, intron 6 of 23) MLT1J|LTR|ERVL-MaLR 112502 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 141.167-40 chr2 74809997 74810586 + 0.5 NA Intergenic L2c|LINE|L2 -22364 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 150.333-23 chr11 79120496 79121039 + 0.5 NA intron (NM_001098816, intron 4 of 33) intron (NM_001098816, intron 4 of 33) 281342 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 115.833-11 chr12 3127737 3128023 + 0.5 NA intron (NM_006675, intron 2 of 8) FLAM_A|SINE|Alu 50501 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 200.667-23 chr14 67293635 67294667 + 0.5 NA intron (NM_001256550, intron 4 of 14) intron (NM_001256550, intron 4 of 14) 52716 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 145.167-47 chr3 90360903 90361294 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 1253477 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 191.5-46 chr6 104735508 104736264 + 0.5 NA intron (NR_146792, intron 23 of 24) L1ME4a|LINE|L1 123660 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 143-25 chr15 79628155 79628567 + 0.5 NA Intergenic HERVL40-int|LTR|ERVL 195845 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 131.667-70 chr21 21072596 21072963 + 0.5 NA intron (NM_001352595, intron 1 of 14) Tigger20a|DNA|TcMar-Tigger 74370 NM_001352592 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 129.667-95 chr7 51793963 51794485 + 0.5 NA Intergenic L1MC2|LINE|L1 -400968 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 137.667-39 chr17 859261 859676 + 0.5 NA intron (NM_022463, intron 1 of 7) intron (NM_022463, intron 1 of 7) 4643 NM_001205319 64359 Hs.527989 NM_022463 ENSG00000167693 NXN NRX|TRG-4 nucleoredoxin protein-coding 152.5-55 chr5 124577984 124578350 + 0.5 NA Intergenic AluSz|SINE|Alu -139647 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 132-97 chr9 13980383 13980726 + 0.5 NA Intergenic Intergenic 52583 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 160-6 chr1 176657253 176657811 + 0.5 NA intron (NM_021936, intron 3 of 4) L2b|LINE|L2 194357 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 196.167-34 chr7 14255023 14255629 + 0.5 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -263901 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 143.5-91 chr8 141655294 141655707 + 0.5 NA Intergenic L1MDa|LINE|L1 130813 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 172.833-28 chr20 51810793 51811226 + 0.5 NA Intergenic Intergenic -8488 NM_001318031 57167 Hs.517113 NM_020436 ENSG00000101115 SALL4 DRRS|HSAL4|ZNF797 spalt like transcription factor 4 protein-coding 133-55 chr22 41173568 41173954 + 0.5 NA exon (NM_001362843, exon 28 of 30) exon (NM_001362843, exon 28 of 30) 23740 NR_110514 101927279 Hs.517517 NR_110514 EP300-AS1 - EP300 antisense RNA 1 ncRNA 121.5-57 chr2 155738303 155738568 + 0.5 NA Intergenic L2b|LINE|L2 516496 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 141.667-63 chr3 45094611 45094932 + 0.5 NA intron (NM_022842, intron 5 of 8) intron (NM_022842, intron 5 of 8) 51607 NM_022842 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 134-53 chr18 7072327 7072770 + 0.5 NA intron (NM_005559, intron 3 of 62) intron (NM_005559, intron 3 of 62) 45249 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 199.667-22 chr18 37056403 37056903 + 0.5 NA intron (NM_001353920, intron 7 of 10) intron (NM_001353920, intron 7 of 10) -132839 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 139.333-40 chr15 93117100 93117419 + 0.5 NA Intergenic L1MB3|LINE|L1 -28048 NM_020211 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule BMP co-receptor a protein-coding 162.5-68 chr6 166342917 166343369 + 0.5 NA promoter-TSS (NM_145169) promoter-TSS (NM_145169) 512 NR_040022 100289495 NR_040022 LOC100289495 - uncharacterized LOC100289495 ncRNA 149.5-36 chr2 229230123 229230760 + 0.5 NA intron (NM_001330158, intron 1 of 3) intron (NM_001330158, intron 1 of 3) 1651 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 148.167-84 chr8 119014346 119014740 + 0.5 NA intron (NM_001324095, intron 1 of 7) L1MC1|LINE|L1 -52704 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 147.333-83 chr7 44345496 44346053 + 0.5 NA Intergenic L1ME3A|LINE|L1 -20143 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 135.667-103 chr7 68476143 68476567 + 0.5 NA Intergenic Intergenic 456102 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 152.833-60 chr6 81161412 81161987 + 0.5 NA Intergenic Intergenic 590982 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 140-33 chr18 7547208 7547543 + 0.5 NA Intergenic L3|LINE|CR1 -19941 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 143.667-81 chr4 71533311 71533691 + 0.5 NA intron (NM_003759, intron 14 of 22) intron (NM_003759, intron 14 of 22) 194448 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 127.167-78 chr6 129999324 129999705 + 0.5 NA Intergenic Intergenic -18855 NM_032438 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 175-16 chr11 40257681 40258324 + 0.5 NA intron (NM_001258419, intron 4 of 6) intron (NM_001258419, intron 4 of 6) 35128 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 113.667-23 chr11 68769262 68769511 + 0.5 NA intron (NM_001031847, intron 14 of 18) AluJb|SINE|Alu -17866 NM_004923 9633 Hs.145932 NM_004923 ENSG00000132749 TESMIN CXCDC2|MTL5|MTLT testis expressed metallothionein like protein protein-coding 133-71 chr4 140877513 140877846 + 0.5 NA intron (NM_020724, intron 6 of 6) L2c|LINE|L2 -121294 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 164.5-30 chr2 43756609 43757210 + 0.5 NA intron (NM_172069, intron 25 of 29) AluSz|SINE|Alu -17130 NM_001348913 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 122.667-93 chr8 79298768 79299099 + 0.5 NA Intergenic Intergenic -33255 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 115-55 chr3 186113324 186113680 + 0.5 NA Intergenic MIR|SINE|MIR -4413 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 169.333-13 chr11 59739388 59739861 + 0.5 NA Intergenic L1PB|LINE|L1 -9188 NR_045005 81343 Hs.741974 NR_045005 ENSG00000255538 OR10V2P - olfactory receptor family 10 subfamily V member 2 pseudogene pseudo 150.5-8 chr10 78631342 78631680 + 0.5 NA Intergenic Intergenic 364169 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 131.667-18 chr10 117841773 117842073 + 0.5 NA Intergenic Intergenic -204898 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 133.333-17 chr10 108321563 108321949 + 0.5 NA Intergenic Intergenic -252463 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 136.833-46 chr4 48672063 48672670 + 0.5 NA intron (NM_015030, intron 3 of 63) intron (NM_015030, intron 3 of 63) 107933 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 177.5-17 chr11 117063382 117063839 + 0.5 NA intron (NM_001366687, intron 1 of 4) AluSx1|SINE|Alu 34818 NM_001281749 23387 Hs.167451 NM_025164 ENSG00000160584 SIK3 L19|QSK|SEMDK|SIK-3 SIK family kinase 3 protein-coding 176.167-8 chr10 114147311 114147780 + 0.5 NA intron (NM_001321829, intron 5 of 16) L2c|LINE|L2 26634 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 141.333-94 chr7 75860880 75861283 + 0.5 NA Intergenic AluSx4|SINE|Alu -17911 NM_001346188 57414 Hs.488827 NM_020684 ENSG00000005486 RHBDD2 NPD007|RHBDL7 rhomboid domain containing 2 protein-coding 115.5-4 chr1 78937917 78938366 + 0.5 NA exon (NM_022159, exon 5 of 15) exon (NM_022159, exon 5 of 15) 68589 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 201.333-6 chr10 24683943 24684361 + 0.5 NA intron (NM_001367447, intron 2 of 24) AluSz6|SINE|Alu 38596 NM_001367454 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 138.667-103 chr8 67687065 67687457 + 0.5 NA intron (NM_020361, intron 1 of 10) MER81|DNA|hAT-Blackjack 59099 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 125.333-62 chr2 22872992 22873405 + 0.5 NA Intergenic L2c|LINE|L2 336719 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 132-56 chr3 162297341 162297766 + 0.5 NA Intergenic Intergenic 800745 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 120.667-58 chr2 81996282 81996853 + 0.5 NA Intergenic Intergenic -529621 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 157.5-38 chr20 22851574 22852028 + 0.5 NA Intergenic L1MA9|LINE|L1 -166457 NR_146527 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 114.833-13 chr12 37629985 37630274 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -686645 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 163.167-18 chr16 80605342 80605814 + 0.5 NA intron (NM_152342, intron 6 of 6) intron (NM_152342, intron 6 of 6) -32770 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 122-24 chr16 53325232 53325615 + 0.5 NA 3' UTR (NM_025134, exon 39 of 39) 3' UTR (NM_025134, exon 39 of 39) 45789 NM_001347693 643802 Hs.451336 NM_001207030 LOC643802 - u3 small nucleolar ribonucleoprotein protein MPP10-like protein-coding 170.167-32 chr20 13067817 13068253 + 0.5 NA intron (NM_001349945, intron 3 of 12) intron (NM_001349945, intron 3 of 12) 59063 NM_018327 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 113.667-123 chr8 65821015 65821303 + 0.5 NA intron (NM_001242318, intron 1 of 12) intron (NM_001242318, intron 1 of 12) 20905 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 137-25 chr12 97156205 97156644 + 0.5 NA Intergenic Intergenic 248958 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 145.333-42 chr20 33033663 33033995 + 0.5 NA intron (NM_174897, intron 2 of 14) MER20|DNA|hAT-Charlie 2181 NM_174897 128859 Hs.375090 NM_174897 ENSG00000167104 BPIFB6 BPIL3|LPLUNC6 BPI fold containing family B member 6 protein-coding 148.5-51 chr3 103710926 103711557 + 0.5 NA Intergenic L1PA3|LINE|L1 -187125 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 178.5-7 chr10 10253149 10253591 + 0.5 NA Intergenic Intergenic 194648 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 135.5-27 chr13 101226511 101226919 + 0.5 NA intron (NM_001350749, intron 13 of 43) MER76|LTR|ERVL 189793 NM_001350751 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 113.833-82 chr7 4692570 4692966 + 0.5 NA intron (NM_001037165, intron 1 of 8) AluJr|SINE|Alu 10473 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 171.167-61 chr8 126979931 126980529 + 0.5 NA Intergenic L1MA8|LINE|L1 -32924 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 119.667-70 chr4 63331905 63332282 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 1077357 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 139-33 chr2 226118422 226118941 + 0.5 NA Intergenic Intergenic -24113 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 127.333-68 chr21 45681234 45681540 + 0.5 NA intron (NM_001348238, intron 2 of 16) L1MDa|LINE|L1 12513 NM_001348241 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 144.833-17 chr12 14544335 14544732 + 0.5 NA intron (NM_024829, intron 2 of 10) L1MEi|LINE|L1 -23199 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 204.333-59 chr8 134025846 134026543 + 0.5 NA Intergenic L2a|LINE|L2 139698 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 118-66 chr20 35061439 35061821 + 0.5 NA intron (NM_199368, intron 3 of 18) L1MB8|LINE|L1 31177 NM_015638 26133 Hs.168073 NM_015638 ENSG00000100991 TRPC4AP C20orf188|PPP1R158|TRRP4AP|TRUSS transient receptor potential cation channel subfamily C member 4 associated protein protein-coding 147.5-75 chr6 68469828 68470349 + 0.5 NA Intergenic LTR84a|LTR|ERVL -140189 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 143.5-69 chr6 53833585 53833927 + 0.5 NA intron (NM_018214, intron 1 of 13) intron (NM_018214, intron 1 of 13) 38751 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 132-68 chr5 34906457 34906830 + 0.5 NA non-coding (NR_026591, exon 5 of 5) non-coding (NR_026591, exon 5 of 5) 8861 NR_026591 5810 Hs.38114 NM_002853 ENSG00000113456 RAD1 HRAD1|REC1 RAD1 checkpoint DNA exonuclease protein-coding 156-8 chr10 34301011 34301397 + 0.5 NA intron (NM_001184790, intron 18 of 22) intron (NM_001184790, intron 18 of 22) 514092 NM_001184789 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 177.167-42 chr6 36707811 36708479 + 0.5 NA intron (NM_001257357, intron 2 of 13) AluJb|SINE|Alu 10319 NM_001257357 401258 Hs.485258 NM_207498 ENSG00000255587 RAB44 RASD3|RASL13|dJ431A14.3 RAB44, member RAS oncogene family protein-coding 197.167-40 chr4 98523080 98523766 + 0.5 NA intron (NM_005723, intron 1 of 7) intron (NM_005723, intron 1 of 7) 135188 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 152.5-11 chr14 48504729 48505281 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -709991 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 117.5-18 chr14 82131283 82131572 + 0.5 NA Intergenic Intergenic -388289 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 119.833-15 chr10 28631969 28632208 + 0.5 NA Intergenic MIRb|SINE|MIR -45433 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 186.167-41 chr8 77971318 77972008 + 0.5 NA Intergenic MIRc|SINE|MIR 520966 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 128.5-41 chr2 150204853 150205292 + 0.5 NA Intergenic Intergenic 51935 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 114-77 chr5 44480839 44481202 + 0.5 NA Intergenic Intergenic 29262 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 169.667-39 chr2 67601657 67602030 + 0.5 NA Intergenic Intergenic 204510 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 140.833-17 chr14 72293289 72293895 + 0.5 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -223228 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 199-28 chr5 128709550 128710077 + 0.5 NA Intergenic Intergenic -171568 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 194.5-3 chr10 117446778 117447521 + 0.5 NA Intergenic Intergenic -71709 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 155.5-46 chr5 29649080 29649418 + 0.5 NA Intergenic Zaphod3|DNA|hAT-Tip100 -231311 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 153.167 chr1 44340232 44340608 + 0.5 NA intron (NM_001301699, intron 1 of 7) intron (NM_001301699, intron 1 of 7) 14837 NM_001301698 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 124-2 chr1 45142743 45143166 + 0.5 NA intron (NM_020883, intron 1 of 13) AluSx3|SINE|Alu 63651 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 120.667-52 chr18 989061 989329 + 0.5 NA Intergenic L1PA5|LINE|L1 -61202 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 125.667-102 chr6 42486798 42487326 + 0.5 NA Intergenic Intergenic -34838 NM_033502 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 113.167-52 chr3 114095792 114096292 + 0.5 NA Intergenic MIR3|SINE|MIR 39305 NM_001256835 79691 Hs.477162 NM_024638 ENSG00000151576 QTRT2 QTRTD1 queuine tRNA-ribosyltransferase accessory subunit 2 protein-coding 174.167-28 chr3 169386610 169387216 + 0.5 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) -60954 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 131-31 chr2 40397342 40397837 + 0.5 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 32715 NM_021097 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 210.167-11 chr16 51819533 51820042 + 0.5 NA Intergenic Intergenic 57268 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 227.333-23 chr21 27682641 27683176 + 0.5 NA Intergenic Intergenic -39471 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 123.833-59 chr7 32131134 32131568 + 0.5 NA intron (NM_001322059, intron 3 of 17) L2b|LINE|L2 -59915 NM_001322056 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 215.667-12 chr11 104079088 104079889 + 0.5 NA intron (NM_025208, intron 1 of 6) AluSx3|SINE|Alu 42848 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 126.167-17 chr11 43470529 43470951 + 0.5 NA intron (NM_018259, intron 21 of 23) MER5A|DNA|hAT-Charlie -88916 NR_031577 100313777 NR_031577 ENSG00000211568 MIR670 hsa-mir-670 microRNA 670 ncRNA 116.833-40 chr4 46301501 46301883 + 0.5 NA intron (NM_001114175, intron 7 of 8) L2c|LINE|L2 87687 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 119.333-112 chr8 119390522 119390799 + 0.5 NA Intergenic L3|LINE|CR1 -25786 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 139.333-45 chr17 26800788 26801198 + 0.5 NA Intergenic Intergenic 288248 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 130.5-72 chr7 117286767 117287184 + 0.5 NA intron (NM_003391, intron 4 of 4) intron (NM_003391, intron 4 of 4) 36083 NM_003391 7472 Hs.567356 NM_003391 ENSG00000105989 WNT2 INT1L1|IRP Wnt family member 2 protein-coding 152.333-31 chr2 56275524 56275910 + 0.5 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -89947 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 136.667-67 chr3 178724110 178724470 + 0.5 NA intron (NM_001278911, intron 1 of 4) L1PA17|LINE|L1 136115 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 116.333-83 chr5 61635239 61635597 + 0.5 NA Intergenic Intergenic -2342 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 116-42 chr2 14365037 14365536 + 0.5 NA intron (NR_103814, intron 1 of 3) intron (NR_103814, intron 1 of 3) 35672 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 116-29 chr15 70418655 70418914 + 0.5 NA Intergenic Intergenic 87144 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 131.333-43 chr19 45339385 45339953 + 0.5 NA Intergenic AluSx1|SINE|Alu -1081 NM_177417 147700 Hs.298079 NM_145275 ENSG00000104892 KLC3 KLC2|KLC2L|KLCt|KNS2B kinesin light chain 3 protein-coding 224.333-34 chr8 60663301 60663950 + 0.5 NA Intergenic AluSx|SINE|Alu -15115 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 148.333-13 chr10 71513463 71514071 + 0.5 NA intron (NM_052836, intron 6 of 12) MIR3|SINE|MIR -1847 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 150.667-77 chr5 116163278 116163799 + 0.5 NA intron (NM_001308080, intron 5 of 6) AluSq2|SINE|Alu 78076 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 120.667-49 chr16 63258602 63258992 + 0.5 NA Intergenic L1PA15|LINE|L1 -1222359 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 132.167-16 chr12 128097342 128097752 + 0.5 NA intron (NR_104647, intron 3 of 4) L1MA7|LINE|L1 20594 NR_104647 100996679 Hs.539127 NR_104647 ENSG00000256551 LINC02369 - long intergenic non-protein coding RNA 2369 ncRNA 146.667-91 chr8 79358649 79359190 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 26731 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 166 chr1 42127805 42128354 + 0.5 NA Intergenic Intergenic -25331 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 116.667-30 chr14 32295330 32295721 + 0.5 NA Intergenic Intergenic -33773 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 144.333-87 chr8 77991821 77992391 + 0.5 NA Intergenic Intergenic -524234 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 131.833-38 chr2 176794794 176795187 + 0.5 NA Intergenic Intergenic 157236 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 128.167-49 chr3 39722373 39722718 + 0.5 NA Intergenic Intergenic -86369 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 121-77 chr6 144350622 144350880 + 0.5 NA intron (NM_007124, intron 1 of 73) intron (NM_007124, intron 1 of 73) -54904 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 152.333-26 chr18 40214684 40215108 + 0.5 NA Intergenic (AATTTA)n|Simple_repeat|Simple_repeat 148610 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 114.833-42 chr3 6041338 6041700 + 0.5 NA Intergenic Intergenic 763930 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 136.333-74 chr5 40457876 40458384 + 0.5 NA Intergenic MSTD|LTR|ERVL-MaLR -221785 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 126.5-50 chr20 12827444 12827898 + 0.5 NA Intergenic Intergenic 109292 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 149.167-56 chr7 4135936 4136388 + 0.5 NA intron (NM_001079653, intron 2 of 19) intron (NM_001079653, intron 2 of 19) -1325 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 134.333-93 chr5 164936673 164937208 + 0.5 NA Intergenic L2a|LINE|L2 466661 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 142.333-36 chr15 92786564 92786881 + 0.5 NA Intergenic L1MEd|LINE|L1 -8762 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 132.333-57 chr2 107349170 107349503 + 0.5 NA intron (NR_049853, intron 1 of 3) intron (NR_049853, intron 1 of 3) 189 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 130.833-40 chr22 25837954 25838347 + 0.5 NA intron (NM_001318245, intron 17 of 43) intron (NM_001318245, intron 17 of 43) 95962 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 178.667-76 chr9 92418502 92419210 + 0.5 NA intron (NM_005014, intron 1 of 2) intron (NM_005014, intron 1 of 2) 5698 NM_005014 4958 Hs.94070 NM_005014 ENSG00000127083 OMD OSAD|SLRR2C osteomodulin protein-coding 160.167-58 chr7 43625839 43626270 + 0.5 NA 3' UTR (NM_004760, exon 7 of 7) 3' UTR (NM_004760, exon 7 of 7) 42946 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 131.667-80 chr3 90137333 90137698 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 1029894 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 157.667-28 chr18 1226821 1227414 + 0.5 NA Intergenic Intergenic 132512 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 166.833-3 chr1 218590512 218590954 + 0.5 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 80638 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 166.167-30 chr21 30185266 30185653 + 0.5 NA Intergenic L1MEd|LINE|L1 -18654 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 158.333-21 chr12 101007100 101007607 + 0.5 NA intron (NM_001286616, intron 7 of 26) AluSz|SINE|Alu 105707 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 154.5-7 chr10 63998475 63998919 + 0.5 NA Intergenic L1PA13|LINE|L1 -476807 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 153.833-13 chr11 67240208 67240569 + 0.5 NA intron (NM_001256405, intron 1 of 9) intron (NM_001256405, intron 1 of 9) 374 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 152.5-75 chrX 43560517 43561051 + 0.5 NA Intergenic Intergenic -94123 NM_000240 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 132-28 chr14 74013419 74013838 + 0.5 NA intron (NM_001321986, intron 2 of 16) intron (NM_001321986, intron 2 of 16) 5660 NM_001330189 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 119-86 chr6 141905523 141905961 + 0.5 NA Intergenic Intergenic 183057 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 179-21 chr2 40969438 40969992 + 0.5 NA Intergenic L3|LINE|CR1 -457280 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 151.667-37 chr2 41485753 41486379 + 0.5 NA Intergenic L1ME1|LINE|L1 -391489 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 149.5-22 chr14 42629020 42629436 + 0.5 NA Intergenic MER89|LTR|ERV1 1022372 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 211.333-8 chr10 16471320 16471759 + 0.5 NA intron (NM_030664, intron 2 of 5) L1ME4a|LINE|L1 34596 NM_001261837 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 141.667-39 chr18 7027243 7027780 + 0.5 NA intron (NM_005559, intron 16 of 62) intron (NM_005559, intron 16 of 62) 72834 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 164.333-73 chr6 97788644 97789225 + 0.5 NA Intergenic Intergenic -235597 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 213.667-28 chr4 74036092 74036589 + 0.5 NA TTS (NM_002090) TTS (NM_002090) 2349 NM_002090 2921 Hs.89690 NM_002090 ENSG00000163734 CXCL3 CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3 C-X-C motif chemokine ligand 3 protein-coding 138.667-110 chr8 137607030 137607490 + 0.5 NA Intergenic L2c|LINE|L2 -193672 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 168.667-14 chr13 83609893 83610306 + 0.5 NA Intergenic Intergenic 272294 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 159.333-15 chr10 99024249 99024795 + 0.5 NA intron (NM_021828, intron 3 of 11) L1MA1|LINE|L1 -99954 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 126.667-83 chr6 113061217 113061573 + 0.5 NA Intergenic MLT1A|LTR|ERVL-MaLR 372052 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 127.833-79 chr9 35919149 35919493 + 0.5 NA Intergenic Intergenic 9831 NM_001348107 158376 Hs.302677 NM_001348107 ENSG00000235387 SPAAR LINC00961|SPAR small regulatory polypeptide of amino acid response protein-coding 149-26 chr14 54439935 54440358 + 0.5 NA intron (NM_005776, intron 1 of 4) intron (NM_005776, intron 1 of 4) 1228 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 140.5-51 chr4 58526638 58527085 + 0.5 NA intron (NR_133943, intron 2 of 2) MLT2D|LTR|ERVL 9467 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 207.333-52 chr8 33115709 33116232 + 0.5 NA Intergenic AluJb|SINE|Alu 357176 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 145.5-4 chr10 69570956 69571335 + 0.5 NA TTS (NM_020999) TTS (NM_020999) 2277 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 132-84 chr6 100805413 100806014 + 0.5 NA intron (NM_006828, intron 5 of 41) intron (NM_006828, intron 5 of 41) 75616 NM_006828 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 169.5-46 chr3 163385206 163385614 + 0.5 NA Intergenic (TTTTG)n|Simple_repeat|Simple_repeat -82109 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 148-6 chr1 121504771 121505412 + 0.5 NA Intergenic L1PA14|LINE|L1 -14021 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 156.833-39 chr4 52948854 52949231 + 0.5 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 86725 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 137.333-66 chr3 150089769 150090182 + 0.5 NA Intergenic Intergenic -6468 NR_136187 105374313 Hs.151216 NR_136187 LOC105374313 - uncharacterized LOC105374313 ncRNA 127.333-70 chr22 22870018 22870551 + 0.5 NA Intergenic Intergenic -15983 NR_049835 100847006 NR_049835 ENSG00000264824 MIR5571 - microRNA 5571 ncRNA 181.167-24 chr6 102460114 102460631 + 0.5 NA Intergenic L1PA8|LINE|L1 1061387 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 132.5-9 chr10 86811139 86811562 + 0.5 NA intron (NM_004329, intron 1 of 12) L1MB7|LINE|L1 54711 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 138.833-61 chr4 73420767 73421105 + 0.5 NA intron (NM_000477, intron 14 of 14) intron (NM_000477, intron 14 of 14) -15285 NM_001354717 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 128.333-24 chr11 116471138 116471479 + 0.5 NA Intergenic Intergenic -168114 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 172.833-15 chr14 77527612 77528266 + 0.5 NA intron (NM_004863, intron 9 of 11) intron (NM_004863, intron 9 of 11) -29123 NM_182509 145501 Hs.29742 NM_182509 ENSG00000100593 ISM2 TAIL1|THSD3 isthmin 2 protein-coding 124.167-46 chr2 76277188 76277574 + 0.5 NA Intergenic Intergenic -566466 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 130.5-33 chr17 28050668 28051141 + 0.5 NA intron (NM_016231, intron 1 of 10) AluJb|SINE|Alu 8227 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 141.167-57 chr5 28327031 28327381 + 0.5 NA Intergenic AluSx1|SINE|Alu -39541 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 164.833-11 chr11 114476036 114476459 + 0.5 NA Intergenic Intergenic 36780 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 136.333-67 chr4 60847613 60847974 + 0.5 NA Intergenic Intergenic -74826 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 127.333-114 chr8 89495069 89495362 + 0.5 NA Intergenic Intergenic 262496 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 154.5-18 chr12 62546995 62547455 + 0.5 NA intron (NM_001278469, intron 22 of 35) intron (NM_001278469, intron 22 of 35) 56209 NR_121682 283416 Hs.375881 NM_175895 ENSG00000221949 LINC01465 C12orf61 long intergenic non-protein coding RNA 1465 ncRNA 134.333-17 chr10 118441917 118442431 + 0.5 NA Intergenic Intergenic 85066 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 143.833-2 chr1 224360617 224360987 + 0.5 NA intron (NM_001277198, intron 2 of 4) intron (NM_001277198, intron 2 of 4) 3923 NR_102347 29097 Hs.445890 NM_014184 ENSG00000143771 CNIH4 CNIH-4|CNIH2|HSPC163 cornichon family AMPA receptor auxiliary protein 4 protein-coding 126.667-28 chr16 84156905 84157286 + 0.5 NA intron (NM_178452, intron 5 of 11) L1MC5|LINE|L1 -1945 NM_001318756 123872 Hs.310164 NM_178452 ENSG00000154099 DNAAF1 CILD13|LRRC50|ODA7|swt dynein axonemal assembly factor 1 protein-coding 168.167-41 chr4 40067876 40068327 + 0.5 NA intron (NM_001318359, intron 1 of 18) L1MB2|LINE|L1 -10902 NR_027277 344967 Hs.534633 NR_027277 ENSG00000205794 LOC344967 - acyl-CoA thioesterase 7 pseudogene pseudo 126.667-59 chr3 105895507 105895865 + 0.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -26285 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 159.333-34 chr2 43299494 43300105 + 0.5 NA intron (NM_001083953, intron 31 of 37) AluSq|SINE|Alu 72588 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 137.5-10 chr10 6823808 6824222 + 0.5 NA intron (NR_038291, intron 2 of 4) intron (NR_038291, intron 2 of 4) 44417 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 129.333-108 chr9 30262376 30262926 + 0.5 NA Intergenic L1MA3|LINE|L1 145803 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 130-86 chr5 130306310 130306617 + 0.5 NA Intergenic L1MA6|LINE|L1 401998 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 137.5-51 chr21 43577328 43577856 + 0.5 NA intron (NM_007031, intron 8 of 8) intron (NM_007031, intron 8 of 8) 12410 NM_017445 54145 NM_017445 ENSG00000234289 H2BFS H2B/s H2B histone family member S protein-coding 146.5-27 chr14 52292883 52293349 + 0.5 NA Intergenic L1ME3A|LINE|L1 -21196 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 141.5-38 chr18 347641 348100 + 0.5 NA intron (NM_130386, intron 4 of 9) intron (NM_130386, intron 4 of 9) -79823 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 151.667-53 chr21 21760709 21761115 + 0.5 NA intron (NR_109958, intron 2 of 4) intron (NR_109958, intron 2 of 4) 13927 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 135-77 chr5 62609810 62610344 + 0.5 NA intron (NM_016338, intron 29 of 29) intron (NM_016338, intron 29 of 29) 31258 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 145.667-85 chr5 160042880 160043197 + 0.5 NA intron (NM_003314, intron 4 of 7) intron (NM_003314, intron 4 of 7) 33899 NM_003314 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 150-43 chr2 165518680 165519043 + 0.5 NA intron (NM_001172173, intron 3 of 6) L2c|LINE|L2 49163 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 148-84 chr9 97683682 97684271 + 0.5 NA intron (NR_027302, intron 5 of 6) intron (NR_027302, intron 5 of 6) 13433 NR_149094 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 128.5 chr1 40912030 40912490 + 0.5 NA Intergenic Intergenic -49897 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 142.667-32 chr14 70412055 70412403 + 0.5 NA intron (NM_001202549, intron 1 of 4) intron (NM_001202549, intron 1 of 4) 4861 NM_001202548 100529257 Hs.443661 NM_001202547 ENSG00000258644 SYNJ2BP-COX16 - SYNJ2BP-COX16 readthrough protein-coding 170.833-33 chr4 47593638 47594121 + 0.5 NA TTS (NM_001278585) TTS (NM_001278585) -58790 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 241.167-9 chr3 38226631 38227185 + 0.5 NA intron (NM_005109, intron 8 of 17) L1MD3|LINE|L1 -38904 NM_004256 9390 Hs.225941 NM_004256 ENSG00000172940 SLC22A13 OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3 solute carrier family 22 member 13 protein-coding 114-105 chr9 27733676 27734076 + 0.5 NA Intergenic MER74A|LTR|ERVL -160010 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 175.333-66 chr8 124052717 124053438 + 0.5 NA intron (NM_001039112, intron 22 of 40) MIRc|SINE|MIR -12295 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 136-11 chr10 62685976 62686347 + 0.5 NA Intergenic MIRb|SINE|MIR -118559 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 168-79 chr8 136362929 136363446 + 0.5 NA Intergenic LTR40A1|LTR|ERVL -167611 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 141.5-61 chr3 126076567 126077056 + 0.5 NA intron (NM_001008486, intron 1 of 10) L1ME3B|LINE|L1 7480 NM_001008485 54946 Hs.573007 NM_017836 ENSG00000114544 SLC41A3 SLC41A1-L2 solute carrier family 41 member 3 protein-coding 123.333-117 chr9 87996338 87996905 + 0.5 NA Intergenic L1MB7|LINE|L1 -21841 NM_178432 23552 Hs.522274 NM_012119 ENSG00000156345 CDK20 CCRK|CDCH|P42|PNQALRE cyclin dependent kinase 20 protein-coding 120.5-48 chr19 9814068 9814458 + 0.5 NA intron (NM_001316939, intron 2 of 3) AluSc|SINE|Alu 4816 NM_001316941 54850 Hs.12439 NM_017703 ENSG00000127452 FBXL12 Fbl12 F-box and leucine rich repeat protein 12 protein-coding 117.667-71 chr20 16186830 16187134 + 0.5 NA Intergenic Intergenic -201100 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 115-77 chr7 78434383 78434748 + 0.5 NA intron (NM_001301128, intron 6 of 20) intron (NM_001301128, intron 6 of 20) 87323 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 115.833-65 chr6 79919498 79919904 + 0.5 NA intron (NM_022726, intron 4 of 5) intron (NM_022726, intron 4 of 5) 27852 NM_022726 6785 Hs.101915 NM_022726 ENSG00000118402 ELOVL4 ADMD|CT118|ISQMR|SCA34|STGD2|STGD3 ELOVL fatty acid elongase 4 protein-coding 149.667-57 chr4 41002915 41003288 + 0.5 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -145909 NM_001166053 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 154.167-44 chr3 82294224 82294576 + 0.5 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 308258 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 171-63 chr8 84837131 84837809 + 0.5 NA intron (NM_001287244, intron 3 of 7) intron (NM_001287244, intron 3 of 7) 131543 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 141.5-34 chr17 2262306 2262621 + 0.5 NA intron (NM_017575, intron 8 of 18) intron (NM_017575, intron 8 of 18) 3722 NM_001256827 23293 Hs.448342 NM_017575 ENSG00000070366 SMG6 C17orf31|EST1A|SMG-6|hSMG5/7a SMG6 nonsense mediated mRNA decay factor protein-coding 146.667-16 chr11 72890972 72891363 + 0.5 NA intron (NM_014824, intron 10 of 19) AluJb|SINE|Alu 76756 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 115.167-61 chr2 222724322 222724770 + 0.5 NA Intergenic MER66D|LTR|ERV1 52888 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 129.5-23 chr14 60091234 60091559 + 0.5 NA promoter-TSS (NM_022495) promoter-TSS (NM_022495) -515 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 158.5-44 chr2 165071178 165071788 + 0.5 NA Intergenic MER72|LTR|ERV1 -115958 NM_173512 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 176.333-45 chr4 105722285 105722733 + 0.5 NA intron (NM_001370181, intron 3 of 11) intron (NM_001370181, intron 3 of 11) 11696 NM_001031720 79807 Hs.161429 NM_024751 ENSG00000138780 GSTCD - glutathione S-transferase C-terminal domain containing protein-coding 125.333-103 chr6 55518930 55519249 + 0.5 NA intron (NM_001287746, intron 4 of 9) intron (NM_001287746, intron 4 of 9) 60125 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 193.5-57 chr9 28249610 28250302 + 0.5 NA intron (NM_152570, intron 5 of 6) UCON132b|DNA|hAT-Tip100 469349 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 151.5-13 chr10 67605225 67605605 + 0.5 NA intron (NM_001127384, intron 3 of 17) L1MA9|LINE|L1 60245 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 113.667-31 chr12 13344685 13345003 + 0.5 NA Intergenic L1MEd|LINE|L1 31901 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 224.167-21 chr5 151662410 151663120 + 0.5 NA 3' UTR (NM_003118, exon 10 of 10) 3' UTR (NM_003118, exon 10 of 10) -14180 NR_109873 101927096 Hs.571023 NR_109873 ENSG00000249035 CLMAT3 CTB-113P19.1|SPARC-AS1 colorectal liver metastasis associated transcript 3 ncRNA 154.167-52 chr4 185551213 185551622 + 0.5 NA Intergenic Intergenic -15859 NM_014476 27295 Hs.701364 NM_014476 ENSG00000154553 PDLIM3 ALP PDZ and LIM domain 3 protein-coding 132.333-11 chr10 53064430 53064784 + 0.5 NA Intergenic Intergenic -292907 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 185-30 chr20 9786554 9787114 + 0.5 NA intron (NM_177990, intron 1 of 9) intron (NM_177990, intron 1 of 9) 52242 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 142.5-68 chr7 82090440 82090970 + 0.5 NA intron (NM_000722, intron 6 of 38) intron (NM_000722, intron 6 of 38) 81528 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 132-31 chr15 79772287 79772643 + 0.5 NA Intergenic Intergenic 124532 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 206.333-22 chr3 169994418 169995108 + 0.5 NA 3' UTR (NM_003262, exon 8 of 8) 3' UTR (NM_003262, exon 8 of 8) 27956 NM_003262 7095 Hs.744859 NM_003262 ENSG00000008952 SEC62 Dtrp1|HTP1|TLOC1|TP-1 SEC62 homolog, preprotein translocation factor protein-coding 127.667-68 chr4 99714139 99714568 + 0.5 NA Intergenic Intergenic -59674 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 125.667-113 chr7 43178530 43178944 + 0.5 NA intron (NM_015052, intron 2 of 29) MIRc|SINE|MIR 27842 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 145.333-85 chr8 37078686 37079363 + 0.5 NA Intergenic Intergenic 294650 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 142.667-102 chrX 7394541 7394866 + 0.5 NA Intergenic Intergenic 142230 NM_001320754 412 Hs.522578 NM_000351 ENSG00000101846 STS ARSC|ARSC1|ASC|ES|SSDD|XLI steroid sulfatase protein-coding 126-70 chr5 8945955 8946273 + 0.5 NA Intergenic Intergenic 106382 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 142.167-51 chr20 51276255 51276744 + 0.5 NA Intergenic Intergenic 176478 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 175.167-8 chr1 210171192 210171731 + 0.5 NA TTS (NM_001146264) TTS (NM_001146264) -61335 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 137.333-34 chr16 50518530 50518861 + 0.5 NA Intergenic MIRb|SINE|MIR -29701 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 131.833-50 chr4 60878591 60878925 + 0.5 NA Intergenic Intergenic -43861 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 121.833-27 chr19 29791098 29791514 + 0.5 NA Intergenic Intergenic -20685 NM_001322261 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 127.333-79 chr3 67498368 67498715 + 0.5 NA intron (NM_001177599, intron 7 of 10) intron (NM_001177599, intron 7 of 10) 156073 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 130.5-12 chr11 34617856 34618167 + 0.5 NA Intergenic Intergenic -3082 NM_001206615 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 160.833-2 chr1 29891844 29892284 + 0.5 NA Intergenic L2a|LINE|L2 145548 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 136.5-91 chr8 80847821 80848164 + 0.5 NA intron (NM_001033723, intron 1 of 8) L1MD2|LINE|L1 26476 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 158.333-6 chr10 15120577 15121038 + 0.5 NA intron (NM_001308295, intron 9 of 12) intron (NM_001308295, intron 9 of 12) 23452 NM_006414 10557 Hs.94986 NM_006414 ENSG00000152464 RPP38 - ribonuclease P/MRP subunit p38 protein-coding 146.833-17 chr14 81846940 81847419 + 0.5 NA Intergenic HERVL-int|LTR|ERVL -104041 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 119.667-12 chr11 24772205 24772529 + 0.5 NA intron (NM_001252010, intron 5 of 9) Tigger15a|DNA|TcMar-Tigger 275314 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 138.5-85 chr8 130370396 130370965 + 0.5 NA intron (NM_001247996, intron 2 of 30) L1MB7|LINE|L1 72980 NM_001362924 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 121.833-39 chr20 31064378 31064660 + 0.5 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -193145 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 143.667-43 chr15 80384681 80385225 + 0.5 NA Intergenic MIRb|SINE|MIR -19429 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 136.333-77 chr5 114016524 114017039 + 0.5 NA Intergenic MER5B|DNA|hAT-Charlie -345289 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 209-9 chr10 54495307 54496012 + 0.5 NA intron (NR_134503, intron 1 of 5) intron (NR_134503, intron 1 of 5) 9429 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 126.667-72 chr4 159858724 159859237 + 0.5 NA Intergenic Intergenic -81196 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 133-85 chr6 169523908 169524199 + 0.5 NA intron (NR_146875, intron 19 of 20) L1MA4|LINE|L1 177976 NM_182552 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 134.167-53 chr22 37000994 37001300 + 0.5 NA intron (NM_178552, intron 3 of 5) MER117|DNA|hAT-Charlie 6704 NM_178552 339669 Hs.124502 NM_178552 ENSG00000185264 TEX33 C22orf33|EAN57|cE81G9.2 testis expressed 33 protein-coding 154-67 chr6 137479806 137480379 + 0.5 NA Intergenic MIRb|SINE|MIR 14302 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 138.167-72 chr7 50590656 50591044 + 0.5 NA 3' UTR (NM_001350814, exon 19 of 19) 3' UTR (NM_001350814, exon 19 of 19) -25445 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 225.167-16 chr2 226340554 226341462 + 0.5 NA Intergenic Ricksha_0|DNA|MULE-MuDR 198214 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 192.333-16 chr18 1219229 1219943 + 0.5 NA Intergenic Intergenic 140043 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 114.167-18 chr11 100062845 100063260 + 0.5 NA intron (NM_001243270, intron 9 of 23) intron (NM_001243270, intron 9 of 23) 506907 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 136.833-66 chr7 2905842 2906311 + 0.5 NA TTS (NM_032415) TTS (NM_032415) -61768 NM_007353 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 201.667-54 chr9 86222432 86223183 + 0.5 NA intron (NM_001276367, intron 4 of 4) intron (NM_001276367, intron 4 of 4) 33226 NM_001276368 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 115.667-76 chr3 114041736 114042227 + 0.5 NA intron (NR_148531, intron 2 of 14) intron (NR_148531, intron 2 of 14) 14545 NM_020817 57577 Hs.477159 NM_020817 ENSG00000163617 CCDC191 KIAA1407 coiled-coil domain containing 191 protein-coding 131.333-73 chr4 40397729 40398068 + 0.5 NA Intergenic AluJb|SINE|Alu 62565 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 124.667-28 chr12 117631193 117631585 + 0.5 NA intron (NM_173598, intron 5 of 19) intron (NM_173598, intron 5 of 19) -269587 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 117.667-112 chr6 71865373 71865830 + 0.5 NA Intergenic L1MC3|LINE|L1 -21102 NM_014989 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 199.167-7 chr11 26797493 26798037 + 0.5 NA Intergenic Intergenic -75705 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 134.833-25 chr2 38124525 38124827 + 0.5 NA Intergenic Intergenic -6429 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 139.5-8 chr1 238293816 238294185 + 0.5 NA Intergenic Intergenic 192017 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 130.333-44 chr19 29331675 29332076 + 0.5 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -118724 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 158.833-34 chr22 28444200 28444658 + 0.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -15440 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 128.667-74 chr3 51183285 51183643 + 0.5 NA intron (NM_004947, intron 12 of 52) intron (NM_004947, intron 12 of 52) -201827 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 113.833-81 chr6 161157742 161158219 + 0.5 NA intron (NM_020133, intron 3 of 8) MIRb|SINE|MIR 4002 NR_024277 79992 Hs.664873 NM_024929 ENSG00000279355 AGPAT4-IT1 C6orf59|NCRNA00241 AGPAT4 intronic transcript 1 ncRNA 142.333-93 chr7 99195046 99195340 + 0.5 NA exon (NM_001145715, exon 4 of 10) exon (NM_001145715, exon 4 of 10) 12296 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 IPOA8 karyopherin subunit alpha 7 protein-coding 237.833-5 chr2 32128640 32129185 + 0.5 NA intron (NM_001363875, intron 8 of 15) MLT1C|LTR|ERVL-MaLR -36929 NM_001193514 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 116-91 chr7 88246056 88246459 + 0.5 NA Intergenic L1MA6|LINE|L1 -19264 NM_001256892 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 116.333-48 chr2 17778203 17778732 + 0.5 NA intron (NM_182625, intron 12 of 13) (AT)n|Simple_repeat|Simple_repeat 24329 NM_001130009 348654 Hs.467793 NM_182625 ENSG00000178295 GEN1 Gen GEN1 Holliday junction 5' flap endonuclease protein-coding 138-65 chr21 29148905 29149330 + 0.5 NA intron (NM_001286624, intron 1 of 3) intron (NM_001286624, intron 1 of 3) 3540 NM_001286624 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 171.667-21 chr14 44787491 44788027 + 0.5 NA intron (NR_146457, intron 2 of 4) L2a|LINE|L2 11367 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 194.333-33 chr5 157903927 157904440 + 0.5 NA Intergenic AluSq2|SINE|Alu -45038 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 164-27 chr2 21181642 21182075 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 57872 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 115.833-9 chr10 110284020 110284406 + 0.5 NA intron (NM_001008541, intron 4 of 4) intron (NM_001008541, intron 4 of 4) 20707 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 138.667-105 chr8 81178675 81179164 + 0.5 NA Intergenic Intergenic -66851 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 164.167-45 chr3 105013824 105014281 + 0.5 NA Intergenic Intergenic -352661 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 208.833-30 chr7 9811160 9811805 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR 177212 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 128.833-75 chr5 140649807 140650165 + 0.5 NA intron (NM_006083, intron 2 of 19) L1ME3G|LINE|L1 2142 NR_037428 100500820 NR_037428 ENSG00000284325 MIR3655 - microRNA 3655 ncRNA 124.833-39 chr2 70729750 70730141 + 0.5 NA intron (NM_017482, intron 1 of 12) intron (NM_017482, intron 1 of 12) 37770 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 134.667-63 chr22 50139338 50139735 + 0.5 NA intron (NM_018995, intron 15 of 26) FLAM_A|SINE|Alu -7519 NM_001164106 54456 Hs.62880 NM_018995 ENSG00000073146 MOV10L1 CHAMP|DJ402G11.8 Mov10 like RISC complex RNA helicase 1 protein-coding 120.833-22 chr18 13727192 13727607 + 0.5 NA promoter-TSS (NM_001098801) promoter-TSS (NM_001098801) 726 NM_001308263 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 119.5-41 chr17 61001299 61001613 + 0.5 NA intron (NM_001330413, intron 15 of 25) intron (NM_001330413, intron 15 of 25) 323605 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 130-98 chr7 95914673 95915081 + 0.5 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 142371 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 142.167-33 chr18 59596027 59596403 + 0.5 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 101208 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 181.167-23 chr6 52149100 52149494 + 0.5 NA TTS (NR_029903) TTS (NR_029903) 374 NR_029903 442890 NR_029903 ENSG00000199080 MIR133B MIRN133B|miRNA133B|mir-133b microRNA 133b ncRNA 121-19 chr12 18077242 18077592 + 0.5 NA Intergenic Intergenic 12776 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 157.333-42 chr2 209882912 209883302 + 0.5 NA intron (NM_032504, intron 25 of 63) intron (NM_032504, intron 25 of 63) 111114 NM_032504 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 222-10 chr12 55569189 55569863 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -4889 NM_001258285 121129 Hs.742584 NM_001258285 ENSG00000179615 OR2AP1 OR2AP1P olfactory receptor family 2 subfamily AP member 1 protein-coding 162.5-50 chr3 178607317 178607963 + 0.5 NA intron (NM_001278911, intron 1 of 4) (GT)n|Simple_repeat|Simple_repeat 48790 NM_005832 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 127.333-31 chr13 87261270 87261792 + 0.5 NA Intergenic L1MEd|LINE|L1 349611 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 148.333-77 chr4 163911896 163912427 + 0.5 NA intron (NM_001166373, intron 2 of 7) MLT1J|LTR|ERVL-MaLR 285550 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 136.333-93 chr8 48660353 48660702 + 0.5 NA intron (NR_105002, intron 2 of 3) L1MC3|LINE|L1 40124 NR_105004 101929217 Hs.547790 NR_105004 ENSG00000253455 LOC101929217 - uncharacterized LOC101929217 ncRNA 197.167-49 chr5 147678033 147678762 + 0.5 NA intron (NM_001270934, intron 1 of 20) L1MA8|LINE|L1 104331 NM_001282282 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 128.333-81 chr3 108336528 108337113 + 0.5 NA intron (NM_001370244, intron 2 of 9) intron (NM_001370244, intron 2 of 9) 25035 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 150.5-86 chr9 88168283 88168610 + 0.5 NA Intergenic AluSz|SINE|Alu -29965 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 139.667-54 chr2 113026875 113027440 + 0.5 NA TTS (NM_173178) TTS (NM_173178) 21698 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 156-66 chr5 46221571 46222237 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -525524 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 125.333-29 chr11 107392405 107392712 + 0.5 NA intron (NM_152434, intron 11 of 17) intron (NM_152434, intron 11 of 17) 65288 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 155.667-29 chr17 77339307 77339794 + 0.5 NA intron (NM_006640, intron 1 of 10) AluSx|SINE|Alu 20035 NM_006640 10801 Hs.440932 NM_006640 ENSG00000184640 SEPTIN9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1 septin 9 protein-coding 191.833-10 chr17 47665106 47665550 + 0.5 NA intron (NM_002265, intron 9 of 21) intron (NM_002265, intron 9 of 21) 14263 NM_001276453 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 177.333-28 chr18 48118665 48119053 + 0.5 NA intron (NM_001371291, intron 4 of 6) intron (NM_001371291, intron 4 of 6) 18289 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 124.5-56 chr5 19266864 19267456 + 0.5 NA Intergenic Intergenic 619112 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 135.667-96 chr6 53268757 53269354 + 0.5 NA 3' UTR (NM_021814, exon 8 of 8) 3' UTR (NM_021814, exon 8 of 8) -7938 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 136-48 chr3 33295244 33295776 + 0.5 NA intron (NM_012157, intron 1 of 14) L1MB7|LINE|L1 18068 NR_146131 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 122-62 chr4 65859464 65859984 + 0.5 NA Intergenic LTR78|LTR|ERV1 -189229 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 220.5-35 chr8 68998302 68999106 + 0.5 NA intron (NR_039986, intron 2 of 4) AluSx1|SINE|Alu 105486 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 135.333-22 chr14 90835207 90835628 + 0.5 NA Intergenic AluY|SINE|Alu -18987 NM_001010854 145567 Hs.655697 NM_001010854 ENSG00000165914 TTC7B TTC7L1|c14_5685 tetratricopeptide repeat domain 7B protein-coding 161.333-28 chr15 62801865 62802252 + 0.5 NA intron (NM_015059, intron 47 of 55) L1MA2|LINE|L1 -21899 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 117.333-15 chr10 126832860 126833190 + 0.5 NA Intergenic Intergenic -72384 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 136.5-30 chr14 26587714 26588103 + 0.5 NA intron (NM_001366391, intron 2 of 5) intron (NM_001366391, intron 2 of 5) 8189 NM_001366396 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 180.667-57 chr5 13839214 13839684 + 0.5 NA exon (NM_001369, exon 35 of 79) exon (NM_001369, exon 35 of 79) 105031 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 121.333-93 chr6 56139708 56139989 + 0.5 NA intron (NM_030820, intron 12 of 29) intron (NM_030820, intron 12 of 29) -48186 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 149.667-62 chr5 910088 910773 + 0.5 NA intron (NM_004237, intron 9 of 12) intron (NM_004237, intron 9 of 12) 17546 NM_004237 9319 Hs.436187 NM_004237 ENSG00000071539 TRIP13 16E1BP|MVA3 thyroid hormone receptor interactor 13 protein-coding 129-63 chr4 43852193 43852665 + 0.5 NA Intergenic Intergenic -164432 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 114.333-59 chr2 7925473 7925933 + 0.5 NA intron (NR_015405, intron 2 of 2) MLT1I|LTR|ERVL-MaLR -26048 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 128.333-10 chr1 192650373 192650713 + 0.5 NA intron (NM_144766, intron 4 of 5) CR1_Mam|LINE|CR1 14396 NM_144766 6003 Hs.497220 NM_002927 ENSG00000127074 RGS13 - regulator of G protein signaling 13 protein-coding 122.833-15 chr11 105814374 105814730 + 0.5 NA intron (NR_046356, intron 3 of 16) MIRb|SINE|MIR 203846 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 143.833-32 chr4 149517552 149517913 + 0.5 NA intron (NM_001363507, intron 12 of 13) MLT2A2|LTR|ERVL 298111 NM_001363509 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 148.667-87 chr9 127134833 127135222 + 0.5 NA intron (NM_001190729, intron 8 of 17) intron (NM_001190729, intron 8 of 17) -12392 NM_012098 23452 Hs.653262 NM_012098 ENSG00000136859 ANGPTL2 ARP2|HARP angiopoietin like 2 protein-coding 217-24 chr4 53767650 53768290 + 0.5 NA Intergenic Intergenic 72069 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 133.5-84 chr9 3531866 3532199 + 0.5 NA Intergenic Intergenic -6031 NM_134428 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 141.333-75 chr5 79892397 79892996 + 0.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR -43883 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 161.667-91 chr9 14212908 14213373 + 0.5 NA intron (NR_161383, intron 1 of 7) intron (NR_161383, intron 1 of 7) -32336 NR_161385 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 124.167-67 chr4 149859707 149860058 + 0.5 NA Intergenic L1MA4|LINE|L1 -44039 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 139.167-56 chr3 76226583 76227149 + 0.5 NA Intergenic Intergenic -441317 NM_001290210 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 122.833-12 chr10 101173703 101174233 + 0.5 NA Intergenic L1MEh|LINE|L1 -2354 NR_120620 101927396 Hs.551648 NR_120620 ENSG00000237579 LINC01514 - long intergenic non-protein coding RNA 1514 ncRNA 146.333-56 chr2 198056030 198056447 + 0.5 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 251645 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 139.167-69 chr8 132133855 132134149 + 0.5 NA intron (NM_001204824, intron 13 of 14) MamRep1527|LTR|LTR -28737 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 151.833-32 chr2 211252559 211253164 + 0.5 NA Intergenic Intergenic 635290 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 115.333-98 chr7 22242093 22242507 + 0.5 NA intron (NM_012294, intron 7 of 25) intron (NM_012294, intron 7 of 25) -47490 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 134.5-69 chr7 66642214 66642726 + 0.5 NA 3' UTR (NM_153033, exon 4 of 4) 3' UTR (NM_153033, exon 4 of 4) -12049 NR_110037 100996437 Hs.667408 NR_110037 LOC100996437 - uncharacterized LOC100996437 ncRNA 156.833-2 chr1 176758040 176758526 + 0.5 NA intron (NM_020318, intron 14 of 22) intron (NM_020318, intron 14 of 22) 271162 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 191.167-4 chr12 65606228 65606752 + 0.5 NA intron (NR_146529, intron 2 of 2) intron (NR_146529, intron 2 of 2) 3621 NR_146529 105369807 NR_146529 ENSG00000256268 LINC02454 - long intergenic non-protein coding RNA 2454 ncRNA 134.5-5 chr1 74419816 74420161 + 0.5 NA intron (NM_015978, intron 17 of 24) intron (NM_015978, intron 17 of 24) 63452 NM_001364665 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 208.667-18 chr14 79217493 79218317 + 0.5 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) 17923 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 161.167-64 chrX 70992862 70993285 + 0.5 NA Intergenic AluSx1|SINE|Alu -61977 NM_001048164 84889 Hs.175220 NM_032803 ENSG00000165349 SLC7A3 ATRC3|CAT-3|CAT3 solute carrier family 7 member 3 protein-coding 123.667-49 chr2 49898269 49898607 + 0.5 NA Intergenic Intergenic 75765 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 134.667-65 chr3 106027587 106028074 + 0.5 NA Intergenic L1MEi|LINE|L1 -158429 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 157-30 chr16 56431789 56432216 + 0.5 NA 3' UTR (NM_007006, exon 7 of 7) 3' UTR (NM_007006, exon 7 of 7) -6457 NM_001323512 267 Hs.295137 NM_001144 ENSG00000159461 AMFR GP78|RNF45 autocrine motility factor receptor protein-coding 162-48 chr4 16748417 16748893 + 0.5 NA intron (NM_001304435, intron 2 of 7) intron (NM_001304435, intron 2 of 7) 149990 NM_001290 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 136.5-53 chr2 166885990 166886512 + 0.5 NA Intergenic Intergenic -2236 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 127.333-100 chr6 139859725 139860224 + 0.5 NA non-coding (NR_038399, exon 3 of 3) non-coding (NR_038399, exon 3 of 3) 5124 NR_138542 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 139.833-25 chr15 53611815 53612123 + 0.5 NA intron (NM_182758, intron 16 of 19) intron (NM_182758, intron 16 of 19) -70866 NM_001277176 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 131.167-68 chr6 1135192 1135733 + 0.5 NA Intergenic L1MA5|LINE|L1 -34130 NR_027115 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 122.5-100 chr8 87560438 87560708 + 0.5 NA Intergenic Intergenic 313442 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 119.167-49 chr2 229320781 229321299 + 0.5 NA Intergenic L2b|LINE|L2 -49753 NM_001100818 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 118.667-78 chr3 88280673 88280947 + 0.5 NA Intergenic Intergenic -57646 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 140.333-10 chr10 69424792 69425144 + 0.5 NA Intergenic Intergenic -8050 NM_001057 6865 Hs.88372 NM_001057 ENSG00000075073 TACR2 NK2R|NKNAR|SKR|TAC2R tachykinin receptor 2 protein-coding 154.333-72 chr7 79758436 79759149 + 0.5 NA Intergenic L1PA8|LINE|L1 304832 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 184-60 chr7 131304131 131304688 + 0.5 NA intron (NM_001145354, intron 2 of 18) intron (NM_001145354, intron 2 of 18) 23370 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 187.833-28 chr6 46782244 46782791 + 0.5 NA Intergenic L2|LINE|L2 -10872 NM_005588 4224 Hs.179704 NM_005588 ENSG00000112818 MEP1A PPHA meprin A subunit alpha protein-coding 160.167-18 chr15_GL383555v2_alt 196203 196701 + 0.5 NA intron (NM_032445, intron 4 of 19) MIRb|SINE|MIR 64401 NR_036196 100422905 NR_036196 ENSG00000263512 MIR4311 - microRNA 4311 ncRNA 133-41 chr2 20844933 20845476 + 0.5 NA Intergenic Intergenic -22074 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 167.833-41 chr4 42854834 42855426 + 0.5 NA Intergenic Intergenic -38136 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 148.833-11 chr12 39174565 39175091 + 0.5 NA Intergenic Intergenic 268292 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 115.667-90 chr4 109615753 109616058 + 0.5 NA intron (NM_017918, intron 1 of 7) 7SK|RNA|RNA 55659 NM_017918 55013 Hs.234149 NM_017918 ENSG00000005059 MCUB CCDC109B mitochondrial calcium uniporter dominant negative beta subunit protein-coding 126.167-61 chr4 20756225 20756635 + 0.5 NA intron (NM_025221, intron 3 of 7) L2c|LINE|L2 55972 NM_001317849 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 parkin coregulated like protein-coding 140.5-55 chr4 111358801 111359299 + 0.5 NA Intergenic (TTCCTT)n|Simple_repeat|Simple_repeat -498403 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 119.667-41 chr2 72076450 72076733 + 0.5 NA Intergenic AluSp|SINE|Alu 71271 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 123.667-10 chr10 26133830 26134176 + 0.5 NA intron (NM_017433, intron 20 of 34) intron (NM_017433, intron 20 of 34) -82304 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 122.5-84 chr6 144052375 144052855 + 0.5 NA intron (NM_001289040, intron 1 of 5) intron (NM_001289040, intron 1 of 5) 2647 NM_001317159 5325 Hs.743225 NM_002656 ENSG00000118495 PLAGL1 LOT1|ZAC|ZAC1 PLAG1 like zinc finger 1 protein-coding 121.333-37 chr17 71487665 71488043 + 0.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -285675 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 135.167-11 chr10 32689380 32689873 + 0.5 NA intron (NM_001321115, intron 24 of 43) MER76-int|LTR|ERVL 211846 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 137.333-101 chr8 125837304 125837715 + 0.5 NA Intergenic Intergenic 113688 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 219.333-39 chr7 127705401 127705869 + 0.5 NA intron (NM_014390, intron 8 of 23) (AGATGT)n|Simple_repeat|Simple_repeat 53441 NM_014390 27044 Hs.122523 NM_014390 ENSG00000197157 SND1 TDRD11|Tudor-SN|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 136-28 chr17 56340432 56340860 + 0.5 NA intron (NM_001370326, intron 4 of 20) L1PA13|LINE|L1 187171 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 148.833-26 chr18 1914823 1915265 + 0.5 NA Intergenic L1P4|LINE|L1 -555415 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 125.833-22 chr15 26386142 26386626 + 0.5 NA Intergenic L1ME1|LINE|L1 242706 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 137.167-73 chr8 139251609 139251999 + 0.5 NA Intergenic MIR|SINE|MIR -337763 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 118-97 chr5 132764620 132765157 + 0.5 NA intron (NM_001098811, intron 2 of 9) intron (NM_001098811, intron 2 of 9) 12351 NM_001300798 23176 Hs.522057 NM_015146 ENSG00000164402 SEPTIN8 SEP2|SEPT8 septin 8 protein-coding 129-44 chr2 160043561 160043912 + 0.5 NA intron (NM_001007267, intron 2 of 26) intron (NM_001007267, intron 2 of 26) 18879 NM_001007267 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 157-11 chr10 49654660 49655017 + 0.5 NA intron (NM_001142929, intron 11 of 14) intron (NM_001142929, intron 11 of 14) -24813 NM_001042427 282966 Hs.131287 NM_182554 ENSG00000178645 C10orf53 - chromosome 10 open reading frame 53 protein-coding 149.333-28 chr14 36854333 36854774 + 0.5 NA intron (NM_001171170, intron 2 of 10) MIR|SINE|MIR 97838 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 131.5-60 chr4 130237271 130237688 + 0.5 NA Intergenic Intergenic -138882 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 123.333-54 chr2 120194712 120195140 + 0.5 NA Intergenic L1M4c|LINE|L1 28474 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 115.167-112 chr8 136589434 136589847 + 0.5 NA intron (NR_147196, intron 2 of 5) (AGGAG)n|Simple_repeat|Simple_repeat 58842 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 135.667-84 chr5 35132051 35132401 + 0.5 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) -14104 NM_001204317 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 168.667-55 chr3 71531295 71531897 + 0.5 NA intron (NR_146142, intron 2 of 19) intron (NR_146142, intron 2 of 19) 10493 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 197.834-4 chr2 170781929 170782877 + 0.5 NA intron (NM_001290030, intron 6 of 9) intron (NM_001290030, intron 6 of 9) -1388 NM_001289947 285141 Hs.443729 NM_001289947 ENSG00000204334 ERICH2 - glutamate rich 2 protein-coding 158.5 chr1 31457540 31458184 + 0.5 NA Intergenic HERVIP10F-int|LTR|ERV1 -42223 NR_034112 149086 Hs.729905 NR_034112 ENSG00000260386 LDC1P LINC01225 leucine decarboxylase 1, pseudogene pseudo 138.333-36 chr14 88755872 88756482 + 0.5 NA intron (NM_183387, intron 1 of 42) L2|LINE|L2 36776 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 135.667-61 chr2 190828580 190829103 + 0.5 NA Intergenic L1M5|LINE|L1 -51980 NM_014905 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 138.833-21 chr14 52509009 52509322 + 0.5 NA intron (NM_001160047, intron 9 of 20) intron (NM_001160047, intron 9 of 20) 43340 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 130-47 chr2 30379831 30380432 + 0.5 NA Intergenic AluJr|SINE|Alu 33485 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 120.167-50 chr21 30345359 30345793 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 3030 NM_181624 337963 Hs.553688 NM_181624 ENSG00000186980 KRTAP23-1 KAP23.1 keratin associated protein 23-1 protein-coding 151-70 chr7 96046584 96047006 + 0.5 NA intron (NM_004411, intron 14 of 16) L2|LINE|L2 172961 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 123.667-72 chr3 150605586 150606005 + 0.5 NA intron (NM_016275, intron 1 of 5) intron (NM_016275, intron 1 of 5) 2474 NM_016275 51714 Hs.369052 NM_016275 ENSG00000198843 SELENOT SELT selenoprotein T protein-coding 220.167-6 chr11 92753248 92754088 + 0.5 NA intron (NM_001008781, intron 3 of 24) L1MA8|LINE|L1 161960 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 114.333-114 chr7 146414133 146414447 + 0.5 NA Intergenic MER102c|DNA|hAT-Charlie -359981 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 128.167-86 chr8 126221430 126221936 + 0.5 NA Intergenic MER41-int|LTR|ERV1 -103812 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 163.833-59 chr8 135010018 135010599 + 0.5 NA Intergenic MIR|SINE|MIR 160373 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 155.833-40 chr3 95939498 95940185 + 0.5 NA Intergenic Intergenic -256648 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 125.833-78 chr6 156385618 156386070 + 0.5 NA Intergenic Intergenic 7094 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 127.833-58 chr5 38680438 38680985 + 0.5 NA Intergenic MARNA|DNA|TcMar-Mariner 39562 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 201.333-27 chr4 30983246 30983767 + 0.5 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -187638 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 131.333-81 chr4 76673916 76674327 + 0.5 NA intron (NM_020859, intron 2 of 10) AluJr4|SINE|Alu 98570 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 223.5-21 chr4 79306563 79307063 + 0.5 NA intron (NR_038342, intron 5 of 5) intron (NR_038342, intron 5 of 5) 19248 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 115.167-28 chr12 117892146 117892475 + 0.5 NA intron (NM_173598, intron 1 of 19) AluSq|SINE|Alu 76680 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 186.333-53 chr7 130830466 130830966 + 0.5 NA Intergenic L1MC4|LINE|L1 46094 NR_029503 407021 NR_029503 ENSG00000284032 MIR29A MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a microRNA 29a ncRNA 122-15 chr11 114345815 114346237 + 0.5 NA Intergenic Intergenic 34013 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 122.5-34 chr14 101284179 101284662 + 0.5 NA Intergenic L1MEh|LINE|L1 123502 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 186-48 chr6 129660228 129660721 + 0.5 NA intron (NM_033515, intron 1 of 14) L2c|LINE|L2 49703 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 186.667-32 chr2 24028221 24028606 + 0.5 NA TTS (NM_001142319) TTS (NM_001142319) 18328 NM_001346880 388931 Hs.407482 NM_001080473 ENSG00000205639 MFSD2B - major facilitator superfamily domain containing 2B protein-coding 122.5-21 chr12 23931902 23932253 + 0.5 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) 17593 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 123.333-96 chr6 121498071 121498480 + 0.5 NA Intergenic Intergenic 62629 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 146.333-75 chr4 138377413 138377953 + 0.5 NA intron (NR_051987, intron 2 of 2) L1MA3|LINE|L1 67972 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 117-3 chr1 67532941 67533308 + 0.5 NA Intergenic AluSz6|SINE|Alu -102722 NM_015640 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 140.167-23 chr15 72156534 72157063 + 0.5 NA Intergenic Intergenic 38395 NM_145204 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 143.333-15 chr12 89300614 89300992 + 0.5 NA Intergenic L1ME3B|LINE|L1 51698 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 136.667-79 chr5 21034086 21034498 + 0.5 NA Intergenic L1MC3|LINE|L1 -418757 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 147-68 chr5 39802079 39802775 + 0.5 NA Intergenic Intergenic -249864 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 119.167-40 chr2 41849100 41849462 + 0.5 NA Intergenic Intergenic -28274 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 138-110 chr8 128542941 128543451 + 0.5 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 21483 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 122.167-40 chr21 31549062 31549513 + 0.5 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 9800 NM_001353690 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 133.167-7 chr10 15652643 15653292 + 0.5 NA intron (NM_001291494, intron 10 of 28) intron (NM_001291494, intron 10 of 28) 66955 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 185-54 chr8 133059294 133059749 + 0.5 NA intron (NM_001282965, intron 1 of 6) intron (NM_001282965, intron 1 of 6) 833 NM_006748 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 124.833-9 chr10 115686605 115686946 + 0.5 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 508014 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 118.333-29 chr13 108264008 108264465 + 0.5 NA Intergenic Intergenic -5393 NM_006573 10673 Hs.525157 NM_006573 ENSG00000102524 TNFSF13B BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 TNF superfamily member 13b protein-coding 142.167-73 chr7 33536888 33537253 + 0.5 NA intron (NM_001362679, intron 21 of 21) MIR3|SINE|MIR -367845 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 154.333-64 chr6 46319984 46320505 + 0.5 NA intron (NR_125838, intron 2 of 3) intron (NR_125838, intron 2 of 3) 5648 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 125-90 chr7 153178215 153178687 + 0.5 NA Intergenic Intergenic 233783 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 130.5-31 chr16 74833550 74833837 + 0.5 NA Intergenic Intergenic -58873 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 128.333-45 chr16 26426943 26427418 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 401943 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 180.333-30 chr2 32360837 32361307 + 0.5 NA intron (NM_016252, intron 1 of 73) AluSz|SINE|Alu 4044 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 133.833-56 chr4 115238731 115239155 + 0.5 NA Intergenic Intergenic -125323 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 225-2 chr1 186820767 186821266 + 0.5 NA Intergenic MamGypLTR1b|LTR|Gypsy -7884 NM_024420 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 144.833-29 chr18 56684646 56685007 + 0.5 NA intron (NM_015285, intron 5 of 27) MER103C|DNA|hAT-Charlie 33441 NM_015285 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 144.5-58 chr3 97752861 97753347 + 0.5 NA 3' UTR (NM_001080448, exon 18 of 18) 3' UTR (NM_001080448, exon 18 of 18) -11417 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 136.167-20 chr13 110393732 110394183 + 0.5 NA intron (NM_001846, intron 4 of 47) intron (NM_001846, intron 4 of 47) 52999 NR_107040 102465872 NR_107040 ENSG00000276765 MIR8073 hsa-mir-8073 microRNA 8073 ncRNA 161.167-17 chr14 49228755 49229420 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie 357293 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 193.5-40 chr4 107454261 107454704 + 0.5 NA Intergenic Intergenic 265752 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 155.833-16 chr13 91393135 91393569 + 0.5 NA Intergenic Intergenic -5269 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 139.833-40 chr2 65312682 65313066 + 0.5 NA 3' UTR (NM_181784, exon 6 of 6) 3' UTR (NM_181784, exon 6 of 6) 53904 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 128.5-20 chr14 21538878 21539194 + 0.5 NA Intergenic Intergenic -1820 NR_111966 6297 Hs.416358 NM_005407 ENSG00000165821 SALL2 COLB|HSAL2|Sal-2|ZNF795|p150(Sal2) spalt like transcription factor 2 protein-coding 129.167-21 chr14 45277568 45277960 + 0.5 NA Intergenic Intergenic -24562 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 157.667-25 chr14 80873804 80874247 + 0.5 NA intron (NM_152446, intron 8 of 24) THE1B|LTR|ERVL-MaLR 67713 NR_157142 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 190-19 chr16 17668332 17668739 + 0.5 NA Intergenic Intergenic -197575 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 122.5-104 chr9 94135774 94136069 + 0.5 NA Intergenic L1ME1|LINE|L1 -40036 NR_029476 406881 NR_029476 ENSG00000199165 MIRLET7A1 LET7A1|MIRNLET7A1|let-7a-1 microRNA let-7a-1 ncRNA 134.667-77 chr4 180677670 180678081 + 0.5 NA Intergenic Intergenic 481274 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 136.333-78 chr5 115685002 115685420 + 0.5 NA Intergenic Intergenic -12559 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 126.167-35 chr17 71062606 71063145 + 0.5 NA Intergenic Intergenic 139304 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 118.667-25 chr12 13122017 13122376 + 0.5 NA Intergenic Intergenic -18529 NM_001367364 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 152.5-48 chr4 86682873 86683328 + 0.5 NA intron (NM_080685, intron 3 of 47) (ATATTT)n|Simple_repeat|Simple_repeat 88785 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 127.667-70 chr5 21233398 21233817 + 0.5 NA Intergenic L1MC2|LINE|L1 -225873 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 125.167-41 chr2 126880071 126880393 + 0.5 NA Intergenic Intergenic -18658 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 157-4 chr1 101055830 101056432 + 0.5 NA intron (NR_109849, intron 1 of 4) L2|LINE|L2 30285 NR_109849 102606465 Hs.593669 NR_109849 LOC102606465 - uncharacterized LOC102606465 ncRNA 130.833-36 chr20 12551967 12552434 + 0.5 NA Intergenic Intergenic 384763 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 122.333 chr1 38282313 38282825 + 0.5 NA Intergenic Intergenic -67802 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 137-3 chr1 101024606 101024980 + 0.5 NA intron (NM_001077394, intron 2 of 7) intron (NM_001077394, intron 2 of 7) 991 NM_015958 51611 Hs.440776 NM_015958 ENSG00000117543 DPH5 AD-018|CGI-30|HSPC143|NPD015 diphthamide biosynthesis 5 protein-coding 141.5-33 chr16 2481362 2481886 + 0.5 NA intron (NM_020705, intron 1 of 6) intron (NM_020705, intron 1 of 6) 6497 NM_020705 57465 Hs.353087 NM_020705 ENSG00000162065 TBC1D24 DFNA65|DFNB86|DOORS|EIEE16|FIME|TLDC6 TBC1 domain family member 24 protein-coding 138.333-104 chr8 80849505 80850155 + 0.5 NA intron (NM_001033723, intron 1 of 8) intron (NM_001033723, intron 1 of 8) 24638 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 136.167-15 chr11 56638976 56639404 + 0.5 NA Intergenic L2|LINE|L2 3249 NM_001002925 338675 Hs.449692 NM_001002925 ENSG00000172464 OR5AP2 OR9J1 olfactory receptor family 5 subfamily AP member 2 protein-coding 249.667-37 chr5 94255997 94256810 + 0.5 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -144704 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 123.5-23 chr13 46207036 46207337 + 0.5 NA Intergenic Intergenic -4742 NM_001282460 220416 Hs.267765 NM_001024609 ENSG00000173988 LRRC63 - leucine rich repeat containing 63 protein-coding 121.333-108 chr8 109107238 109107773 + 0.5 NA intron (NM_003301, intron 2 of 2) MIR|SINE|MIR 20877 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 173.5-21 chr15 90697141 90697525 + 0.5 NA intron (NR_120372, intron 2 of 3) LTR33|LTR|ERVL 19807 NR_120372 101926895 Hs.564760 NR_120372 ENSG00000259736 CRTC3-AS1 - CRTC3 antisense RNA 1 ncRNA 143.167-38 chr2 105173255 105173781 + 0.5 NA Intergenic THE1A|LTR|ERVL-MaLR 29405 NR_136172 105373984 Hs.570237 NR_136172 ENSG00000226508 LINC01918 - long intergenic non-protein coding RNA 1918 ncRNA 175.833-18 chr18 52385013 52385491 + 0.5 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 45055 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 124.333-4 chr1 181629342 181629856 + 0.5 NA intron (NM_001205293, intron 6 of 47) L1ME3G|LINE|L1 146082 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 116-44 chr2 30189057 30189378 + 0.5 NA Intergenic L2b|LINE|L2 1783 NR_145719 109616960 NR_145719 ENSG00000207187 SNORA10B - small nucleolar RNA, H/ACA box 10B snoRNA 129.833-76 chr9 135510511 135511088 + 0.5 NA Intergenic L1MB7|LINE|L1 -4352 NR_121579 101928525 Hs.713076 NR_121579 ENSG00000226706 LOC101928525 - uncharacterized LOC101928525 ncRNA 165.333-16 chr12 77167607 77168129 + 0.5 NA Intergenic Intergenic -102299 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 138.667-115 chr9 84021372 84021698 + 0.5 NA Intergenic AluSz6|SINE|Alu 40730 NM_001358293 80010 Hs.726327 NM_024945 ENSG00000178966 RMI1 BLAP75|C9orf76|FAAP75 RecQ mediated genome instability 1 protein-coding 188-62 chr7 105339302 105339818 + 0.5 NA intron (NM_001350746, intron 2 of 14) intron (NM_001350746, intron 2 of 14) -40781 NM_001278273 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 134.667-23 chr14 27212185 27212698 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 303799 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 135.167-6 chr1 97722922 97723213 + 0.5 NA intron (NM_000110, intron 4 of 22) L1MEg|LINE|L1 -73854 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 173.5-24 chr17 29992474 29992921 + 0.5 NA intron (NR_026738, intron 4 of 15) L1MA7|LINE|L1 51063 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 114.833-64 chr7 51703024 51703316 + 0.5 NA Intergenic L1ME2|LINE|L1 -309914 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 130.5-69 chr6 18110631 18111099 + 0.5 NA Intergenic AluSq2|SINE|Alu 11812 NM_198586 378884 Hs.348351 NM_198586 ENSG00000187566 NHLRC1 EPM2A|EPM2B|MALIN|bA204B7.2 NHL repeat containing E3 ubiquitin protein ligase 1 protein-coding 174-48 chr5 43921261 43921643 + 0.5 NA Intergenic L1M1|LINE|L1 -318222 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 150.333-78 chr4 112235316 112235740 + 0.5 NA intron (NM_018569, intron 1 of 9) MIR|SINE|MIR 3741 NR_136622 55435 Hs.435991 NM_018569 ENSG00000138660 AP1AR 2C18|C4orf16|GBAR|PRO0971|gamma-BAR adaptor related protein complex 1 associated regulatory protein protein-coding 114.333-15 chr10 81667741 81668029 + 0.5 NA Intergenic Intergenic -207309 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 147.333-11 chr10 89571771 89572120 + 0.5 NA Intergenic AluJr|SINE|Alu 20882 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 139.167-31 chr17 32785370 32785760 + 0.5 NA intron (NM_015194, intron 1 of 21) L2|LINE|L2 91559 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 172.667-75 chr8 54088435 54088920 + 0.5 NA intron (NM_001279356, intron 2 of 7) L1MB7|LINE|L1 12877 NM_001279360 10434 Hs.744046 NM_006330 ENSG00000120992 LYPLA1 APT-1|APT1|LPL-I|LPL1|hAPT1 lysophospholipase 1 protein-coding 147-30 chr2 25228430 25228994 + 0.5 NA non-coding (NR_135490, exon 24 of 24) non-coding (NR_135490, exon 24 of 24) 23419 NM_001320893 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 148.333-92 chr7 81943104 81943497 + 0.5 NA Intergenic MSTB|LTR|ERVL-MaLR -65877 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 204.167-8 chr10 126022716 126023247 + 0.5 NA intron (NM_003474, intron 21 of 22) intron (NM_003474, intron 21 of 22) -49708 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 128-32 chr15 58622280 58622659 + 0.5 NA intron (NM_001320570, intron 9 of 14) L1MC5a|LINE|L1 71138 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 137-70 chr4 27020166 27020723 + 0.5 NA intron (NM_001169118, intron 12 of 12) intron (NM_001169118, intron 12 of 12) 159603 NM_020860 57620 Hs.744950 NM_020860 ENSG00000109689 STIM2 - stromal interaction molecule 2 protein-coding 173.833-2 chr1 98180100 98180487 + 0.5 NA Intergenic Intergenic -30418 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 131.667-22 chr11 97205010 97205391 + 0.5 NA Intergenic Intergenic 696775 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 140.667-7 chr1 218997421 218998032 + 0.5 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) -79215 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 120.833-71 chr8 111025260 111025585 + 0.5 NA intron (NR_125417, intron 1 of 5) intron (NR_125417, intron 1 of 5) 2011 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 132.5-13 chr11 95811656 95811932 + 0.5 NA intron (NM_014679, intron 2 of 10) intron (NM_014679, intron 2 of 10) 21296 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 171.667-48 chr21 29586288 29586695 + 0.5 NA intron (NM_000830, intron 12 of 16) intron (NM_000830, intron 12 of 16) -9549 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 149.167-37 chr22 33217765 33218157 + 0.5 NA Intergenic AluSx1|SINE|Alu 109432 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 126.167-89 chr8 89661579 89662133 + 0.5 NA Intergenic Intergenic 95855 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 132.333-61 chr20 34175607 34176060 + 0.5 NA Intergenic AluSc|SINE|Alu -63590 NM_001316364 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 190.167-9 chr13 113934973 113935682 + 0.5 NA Intergenic Intergenic -6336 NR_047495 100861555 Hs.353773 NR_047495 ENSG00000260910 LINC00565 - long intergenic non-protein coding RNA 565 ncRNA 117.333-78 chr4 41866657 41866901 + 0.5 NA Intergenic Intergenic 15832 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 117.833-42 chr2 37047541 37047920 + 0.5 NA intron (NM_019024, intron 18 of 35) Tigger10|DNA|TcMar-Tigger 36642 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 114.667-108 chr6 128632475 128633002 + 0.5 NA Intergenic Intergenic -112139 NM_001291981 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 121.833-51 chr4 99119501 99120065 + 0.5 NA intron (NR_037884, intron 1 of 9) AluJr|SINE|Alu 24515 NM_000670 127 Hs.1219 NM_000670 ENSG00000198099 ADH4 ADH-2|HEL-S-4 alcohol dehydrogenase 4 (class II), pi polypeptide protein-coding 153.333-50 chr3 42360700 42361109 + 0.5 NA Intergenic L1MC5|LINE|L1 49706 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 200-34 chr2 39324941 39325752 + 0.5 NA intron (NM_003618, intron 12 of 33) intron (NM_003618, intron 12 of 33) -81363 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 139.667-19 chr12 11597211 11597605 + 0.5 NA Intergenic Intergenic 49378 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 155.667-35 chr2 15296363 15296786 + 0.5 NA intron (NR_052013, intron 40 of 50) intron (NR_052013, intron 40 of 50) 264760 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 186.833-30 chr4 45689129 45689560 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 434710 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 115.667-116 chr8 60564606 60565117 + 0.5 NA intron (NM_002865, intron 2 of 7) L2a|LINE|L2 47874 NM_002865 5862 Hs.369017 NM_002865 ENSG00000104388 RAB2A LHX|RAB2 RAB2A, member RAS oncogene family protein-coding 123.167 chr1 28010286 28010786 + 0.5 NA intron (NM_001282562, intron 9 of 16) AluJo|SINE|Alu 51074 NM_018053 55113 Hs.55024 NM_018053 ENSG00000158156 XKR8 XRG8|hXkr8 XK related 8 protein-coding 133.333-40 chr15 100836416 100836953 + 0.5 NA Intergenic Intergenic -13068 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 204-33 chr5 168084025 168084485 + 0.5 NA intron (NM_001368145, intron 6 of 26) L1PA16|LINE|L1 -81590 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 189-3 chr11 35213350 35213764 + 0.5 NA intron (NM_001001389, intron 13 of 16) AluSx1|SINE|Alu 50607 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 168.667-49 chr22 21105410 21105788 + 0.5 NA intron (NR_037566, intron 1 of 5) L1M3|LINE|L1 2583 NR_037566 400892 Hs.745077 NM_207474 BCRP2 BCR-2|BCR2|BCRL2 BCR pseudogene 2 pseudo 126.833-16 chr10 99150602 99150929 + 0.5 NA intron (NM_021828, intron 2 of 11) L1M4a1|LINE|L1 85110 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 115-20 chr12 12636304 12636858 + 0.5 NA intron (NM_001310, intron 2 of 3) AluY|SINE|Alu 24705 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 192.667-17 chr14 51562706 51563302 + 0.5 NA intron (NR_047477, intron 2 of 3) MLT1G3|LTR|ERVL-MaLR 36948 NR_047477 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 177.833-24 chr3 15916633 15917146 + 0.5 NA Intergenic L1MC5|LINE|L1 43118 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 123.167-77 chr4 127445010 127445374 + 0.5 NA Intergenic Intergenic -187765 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 171-40 chr4 67361675 67362412 + 0.5 NA Intergenic L1M4b|LINE|L1 59957 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 129.667-3 chr1 90815363 90815755 + 0.5 NA intron (NR_135038, intron 1 of 2) intron (NR_135038, intron 1 of 2) 20602 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 120.833-30 chr2 67949937 67950279 + 0.5 NA Intergenic HAL1|LINE|L1 112896 NM_001190265 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 127.667-5 chr1 174574843 174575303 + 0.5 NA intron (NM_001366446, intron 13 of 25) AluSp|SINE|Alu -125466 NM_001366450 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 150.5-84 chr8 137185082 137185434 + 0.5 NA Intergenic Intergenic 228330 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 116.833-48 chr5 32915158 32915528 + 0.5 NA Intergenic MER50|LTR|ERV1 -32100 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 155-45 chr21 22584339 22584966 + 0.5 NA Intergenic Intergenic 486035 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 141-91 chr9 12233213 12233702 + 0.5 NA Intergenic Intergenic -459928 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 147.167-64 chr8 143363217 143363641 + 0.5 NA Intergenic AluJo|SINE|Alu -3452 NM_001258447 116447 Hs.528574 NM_052963 ENSG00000184428 TOP1MT - DNA topoisomerase I mitochondrial protein-coding 213.833-20 chr21 32358050 32358796 + 0.5 NA intron (NM_014825, intron 14 of 38) intron (NM_014825, intron 14 of 38) 18899 NR_002996 677846 Hs.712293 NR_002996 ENSG00000200792 SNORA80A ACA67|SNORA80 small nucleolar RNA, H/ACA box 80A snoRNA 151.5-6 chr1 173412719 173413317 + 0.5 NA intron (NR_037845, intron 2 of 2) intron (NR_037845, intron 2 of 2) 48344 NR_125960 101928673 Hs.674889 NR_125960 ENSG00000203739 LOC101928673 - uncharacterized LOC101928673 ncRNA 113.333-78 chr4 20887913 20888377 + 0.5 NA intron (NM_147182, intron 2 of 8) L1MEf|LINE|L1 -5435 NM_025221 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 114.5-24 chr12 49051172 49051529 + 0.5 NA exon (NM_003482, exon 10 of 54) exon (NM_003482, exon 10 of 54) 3974 NM_003482 8085 Hs.731384 NM_003482 ENSG00000167548 KMT2D AAD10|ALR|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21 lysine methyltransferase 2D protein-coding 173-49 chr6 39862045 39862420 + 0.5 NA intron (NM_015345, intron 3 of 24) intron (NM_015345, intron 3 of 24) 35148 NR_125831 100505635 Hs.668513 NR_125831 ENSG00000235033 LOC100505635 - uncharacterized LOC100505635 ncRNA 140.167-66 chr6 152742080 152742530 + 0.5 NA Intergenic L2c|LINE|L2 -8492 NM_194435 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 117-75 chr4 33338687 33339100 + 0.5 NA Intergenic L1PB4|LINE|L1 701000 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 177.333-27 chr18 13008222 13008831 + 0.5 NA exon (NM_032142, exon 4 of 45) exon (NM_032142, exon 4 of 45) 17164 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 126-99 chr9 27121586 27121915 + 0.5 NA intron (NM_001290078, intron 1 of 20) MER113|DNA|hAT-Charlie 12609 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 155.667-8 chr1 200551199 200551633 + 0.5 NA TTS (NM_001305792) TTS (NM_001305792) 67422 NM_001305792 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MCPH20|MKS12 kinesin family member 14 protein-coding 136.167-14 chr11 40675724 40676094 + 0.5 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -382779 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 129.667-89 chr6 53225939 53226435 + 0.5 NA Intergenic AluSz|SINE|Alu -50806 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 150-60 chr4 67669640 67670098 + 0.5 NA intron (NM_018227, intron 8 of 32) intron (NM_018227, intron 8 of 32) 31286 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 116-64 chr3 160862972 160863390 + 0.5 NA intron (NM_001317911, intron 1 of 3) intron (NM_001317911, intron 1 of 3) -7417 NR_134243 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 146.667-27 chr13 43896159 43896681 + 0.5 NA Intergenic Intergenic 16516 NM_001350642 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 125.167-56 chr3 112531584 112532141 + 0.5 NA TTS (NM_022488) TTS (NM_022488) -29458 NM_001348906 55032 Hs.237480 NM_017945 ENSG00000138459 SLC35A5 - solute carrier family 35 member A5 protein-coding 116.333-2 chr1 48406469 48407018 + 0.5 NA intron (NM_019073, intron 5 of 12) MIR|SINE|MIR 65461 NM_019073 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 121.333-41 chr19 46906537 46906819 + 0.5 NA intron (NM_004491, intron 1 of 6) intron (NM_004491, intron 1 of 6) 45681 NM_004491 2909 Hs.509447 NM_004491 ENSG00000160007 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 152.833-3 chr1 105795024 105795622 + 0.5 NA Intergenic Intergenic -176388 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 169.667-42 chr2 224874605 224874960 + 0.5 NA intron (NM_001290263, intron 8 of 55) intron (NM_001290263, intron 8 of 55) 72267 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 213.333-25 chr21 37412277 37412950 + 0.5 NA intron (NM_101395, intron 2 of 12) intron (NM_101395, intron 2 of 12) -6292 NM_130436 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 130.833-54 chr5 3266007 3266338 + 0.5 NA Intergenic MER5B|DNA|hAT-Charlie 88337 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 113.167-74 chr7 78782378 78782826 + 0.5 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -226386 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 227.833-15 chr4 151241539 151242332 + 0.5 NA Intergenic AluJb|SINE|Alu -14026 NM_001243349 152503 Hs.744983 NM_001009555 ENSG00000109686 SH3D19 EBP|EVE1|Eve-1|Kryn|SH3P19 SH3 domain containing 19 protein-coding 118.167-55 chr5 90388686 90389021 + 0.5 NA Intergenic Intergenic 20933 NM_004365 1070 Hs.591767 NM_004365 ENSG00000153140 CETN3 CDC31|CEN3 centrin 3 protein-coding 128.333-35 chr14 57458876 57459257 + 0.5 NA Intergenic Intergenic 34791 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 153.833-45 chr4 39433006 39433494 + 0.5 NA intron (NM_175737, intron 1 of 4) MIRb|SINE|MIR 21340 NR_049857 100847065 NR_049857 ENSG00000264621 MIR5591 - microRNA 5591 ncRNA 129.167-70 chr6 140105765 140106220 + 0.5 NA Intergenic L1MCa|LINE|L1 -99260 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 131.333-90 chr6 9078221 9078661 + 0.5 NA Intergenic L1M7|LINE|L1 426232 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 169.833-7 chr10 76394403 76395202 + 0.5 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -493242 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 116.167-55 chr4 163444647 163445115 + 0.5 NA Intergenic L1M5|LINE|L1 28873 NM_032136 84076 Hs.303923 NM_032136 ENSG00000151005 TKTL2 - transketolase like 2 protein-coding 151.833-6 chr10 56813779 56814103 + 0.5 NA Intergenic Intergenic -452668 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 113.5-44 chr18 73736971 73737315 + 0.5 NA Intergenic L1MD2|LINE|L1 410691 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 222.167-11 chr13 65640271 65640806 + 0.5 NA Intergenic LTR40b|LTR|ERVL -225509 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 151-76 chr8 63402177 63402651 + 0.5 NA Intergenic Intergenic -63435 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 203.333-12 chr16 9950840 9951500 + 0.5 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 230897 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 225.5-18 chr14 45181006 45181698 + 0.5 NA intron (NM_001308133, intron 13 of 21) intron (NM_001308133, intron 13 of 21) 45413 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 138.667-4 chr1 189135429 189135863 + 0.5 NA Intergenic Intergenic 1340364 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 175.333-10 chr12 57315693 57316320 + 0.5 NA intron (NM_001351217, intron 1 of 21) AluSz6|SINE|Alu 25768 NM_001330122 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 203.167-29 chr3 185555932 185556384 + 0.5 NA Intergenic Intergenic -3570 NM_139248 200879 Hs.68864 NM_139248 ENSG00000163898 LIPH AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1 lipase H protein-coding 122-80 chr6 155315704 155316169 + 0.5 NA Intergenic Intergenic -1452 NM_001350501 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 139.5-22 chr19 48043867 48044340 + 0.5 NA promoter-TSS (NM_019855) promoter-TSS (NM_019855) -24 NM_019855 56344 Hs.117694 NM_016367 ENSG00000105507 CABP5 CABP3 calcium binding protein 5 protein-coding 129.833-64 chr7 3874325 3874602 + 0.5 NA intron (NM_152744, intron 5 of 44) L1MCa|LINE|L1 -255222 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 158.667-18 chr11 111043681 111044180 + 0.5 NA Intergenic Intergenic 53388 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 132.333-20 chr11 68042439 68042918 + 0.5 NA promoter-TSS (NM_006053) promoter-TSS (NM_006053) -302 NM_006053 10312 Hs.495985 NM_006019 ENSG00000110719 TCIRG1 ATP6N1C|ATP6V0A3|Atp6i|OC-116kDa|OC116|OPTB1|Stv1|TIRC7|Vph1|a3 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 protein-coding 172.5-48 chr5 19345539 19346159 + 0.5 NA Intergenic Intergenic 540423 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 119.5-20 chr11 74220000 74220334 + 0.5 NA intron (NM_001271593, intron 3 of 13) intron (NM_001271593, intron 3 of 13) 48878 NM_001271593 51400 Hs.503251 NM_016147 ENSG00000214517 PPME1 ABDH19|PME-1 protein phosphatase methylesterase 1 protein-coding 143.667-85 chr5 10766914 10767411 + 0.5 NA Intergenic Intergenic -5928 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 113.5-82 chr7 54300150 54300517 + 0.5 NA Intergenic Intergenic -30364 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 126.333-48 chr17 69911286 69911635 + 0.5 NA Intergenic Intergenic -50247 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 142.5-47 chr3 13179054 13179462 + 0.5 NA Intergenic L1MCa|LINE|L1 -105829 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 122.334-3 chr2 12347318 12347970 + 0.5 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 148514 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 154.167-50 chr4 122161133 122161749 + 0.5 NA Intergenic AluJb|SINE|Alu -9162 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 118.667-121 chr9 74914392 74914827 + 0.5 NA Intergenic L1MA4|LINE|L1 -26688 NM_017662 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 121.167-71 chr5 135645648 135646079 + 0.5 NA intron (NM_001349335, intron 3 of 10) intron (NM_001349335, intron 3 of 10) 8072 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 158.833-51 chr5 29992837 29993282 + 0.5 NA Intergenic Intergenic 112499 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 126.833-36 chr19 45493710 45494001 + 0.5 NA promoter-TSS (NM_206901) promoter-TSS (NM_206901) -602 NM_206901 6253 Hs.47517 NM_005619 ENSG00000125744 RTN2 NSP2|NSPL1|NSPLI|SPG12 reticulon 2 protein-coding 150-59 chr4 57665050 57665471 + 0.5 NA Intergenic LTR78|LTR|ERV1 239388 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 118.167-35 chr2 191331055 191331347 + 0.5 NA intron (NM_012223, intron 4 of 28) intron (NM_012223, intron 4 of 28) 85797 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 118.833-10 chr11 19570109 19570531 + 0.5 NA intron (NM_001111018, intron 1 of 37) MIRb|SINE|MIR -4990 NR_039706 100616118 NR_039706 ENSG00000265210 MIR4486 - microRNA 4486 ncRNA 204.333-37 chr4 24221314 24221925 + 0.5 NA intron (NR_148982, intron 1 of 13) intron (NR_148982, intron 1 of 13) 251286 NR_148981 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 165.167-9 chr12 22822026 22822540 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL 197112 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 146.5-64 chr4 104779037 104779587 + 0.5 NA Intergenic L1MA6|LINE|L1 -284418 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 122.333-71 chr3 111659190 111659565 + 0.5 NA intron (NR_134917, intron 14 of 14) L1PA16|LINE|L1 -15299 NM_001185106 257068 Hs.477114 NM_153268 ENSG00000240891 PLCXD2 - phosphatidylinositol specific phospholipase C X domain containing 2 protein-coding 163.833-7 chr10 5505318 5505764 + 0.5 NA Intergenic Intergenic -5971 NM_017422 51806 Hs.180142 NM_017422 ENSG00000178372 CALML5 CLSP calmodulin like 5 protein-coding 178.333-53 chr9 36411237 36411735 + 0.5 NA Intergenic L1MB3|LINE|L1 -10288 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 135.667-35 chr14 61285817 61286155 + 0.5 NA Intergenic Intergenic -4648 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 134.833-55 chr6 4115070 4115400 + 0.5 NA TTS (NM_001166010) TTS (NM_001166010) 20233 NM_001166010 10455 Hs.15250 NM_006117 ENSG00000198721 ECI2 ACBD2|DRS-1|DRS1|HCA88|PECI|dJ1013A10.3 enoyl-CoA delta isomerase 2 protein-coding 125.5-47 chr22 27684097 27684619 + 0.5 NA Intergenic AluSx|SINE|Alu 117398 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 169.5-67 chr7 39610628 39611015 + 0.5 NA 3' UTR (NM_001282446, exon 3 of 3) 3' UTR (NM_001282446, exon 3 of 3) -12751 NM_005402 5898 Hs.6906 NM_005402 ENSG00000006451 RALA RAL RAS like proto-oncogene A protein-coding 195.333-5 chr10 72779885 72780355 + 0.5 NA intron (NR_073062, intron 3 of 9) L1MB7|LINE|L1 59091 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 117.667-76 chr3 72532502 72532939 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -86097 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 176.333-43 chr3 189663924 189664349 + 0.5 NA intron (NM_003722, intron 1 of 13) intron (NM_003722, intron 1 of 13) 32747 NM_001114978 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 117-12 chr10 5319840 5320188 + 0.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger -44952 NM_053049 114131 Hs.511775 NM_053049 ENSG00000178473 UCN3 SCP|SPC|UCNIII urocortin 3 protein-coding 130.333-88 chr7 69292107 69292566 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 305288 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 145.333-62 chr5 83648715 83649117 + 0.5 NA intron (NM_001884, intron 3 of 4) intron (NM_001884, intron 3 of 4) 71939 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 136.167-29 chr17 75209871 75210231 + 0.5 NA intron (NM_001303276, intron 2 of 17) intron (NM_001303276, intron 2 of 17) 4372 NM_024844 79902 Hs.362817 NM_024844 ENSG00000125450 NUP85 FROUNT|NPHS17|Nup75 nucleoporin 85 protein-coding 119-52 chr2 73277456 73277991 + 0.5 NA 5' UTR (NM_001080410, exon 3 of 17) 5' UTR (NM_001080410, exon 3 of 17) 6755 NM_001080410 150726 Hs.23158 NM_001080410 ENSG00000163013 FBXO41 FBX41 F-box protein 41 protein-coding 120.5-43 chr17 67242287 67242555 + 0.5 NA intron (NM_001330447, intron 2 of 32) AluSq2|SINE|Alu -2355 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 115-36 chr2 24082260 24082672 + 0.5 NA intron (NM_147184, intron 3 of 5) intron (NM_147184, intron 3 of 5) 1865 NM_001206802 9540 Hs.50649 NM_004881 ENSG00000115129 TP53I3 PIG3 tumor protein p53 inducible protein 3 protein-coding 150.167-43 chr3 148545380 148545682 + 0.5 NA Intergenic L1M4b|LINE|L1 -152340 NM_000685 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 169.5-21 chr15 23569527 23570042 + 0.5 NA Intergenic Intergenic 4110 NM_005664 7681 Hs.72964 NM_005664 ENSG00000179455 MKRN3 CPPB2|D15S9|RNF63|ZFP127|ZNF127 makorin ring finger protein 3 protein-coding 127.333-84 chr4 32546805 32547285 + 0.5 NA Intergenic Intergenic 196007 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 127.167-26 chr12 57359614 57359953 + 0.5 NA intron (NM_001351217, intron 1 of 21) L1ME1|LINE|L1 -17327 NM_001351214 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 178.167-37 chr5 18055605 18056454 + 0.5 NA Intergenic Intergenic 248755 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 140-36 chr2 46017600 46018055 + 0.5 NA intron (NM_005400, intron 10 of 14) MIR3|SINE|MIR -279580 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 120.167-72 chr6 169541836 169542130 + 0.5 NA intron (NR_146875, intron 19 of 20) intron (NR_146875, intron 19 of 20) 160046 NM_182552 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 118.5-43 chr17 66826629 66827140 + 0.5 NA Intergenic L1MB5|LINE|L1 -8233 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 119.167-57 chr21 25251483 25251782 + 0.5 NA Intergenic Intergenic 180069 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 163.667-34 chr2 32955330 32955824 + 0.5 NA intron (NM_206943, intron 2 of 33) intron (NM_206943, intron 2 of 33) 8624 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 132-58 chr3 197708793 197709129 + 0.5 NA intron (NM_001346873, intron 2 of 21) Tigger13a|DNA|TcMar-Tigger 27943 NM_014687 9711 Hs.478868 NM_014687 ENSG00000145016 RUBCN KIAA0226|RUBICON|SCAR15 rubicon autophagy regulator protein-coding 171.167-48 chr5 55164740 55165098 + 0.5 NA non-coding (NR_131337, exon 4 of 4) non-coding (NR_131337, exon 4 of 4) 4748 NM_001306198 493869 Hs.289044 NM_001008397 ENSG00000164294 GPX8 EPLA847|GPx-8|GSHPx-8|UNQ847 glutathione peroxidase 8 (putative) protein-coding 137.167-35 chr2 118127069 118127583 + 0.5 NA Intergenic Intergenic 38776 NM_001321332 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 161.667-35 chr17 58592516 58593043 + 0.5 NA intron (NM_031272, intron 15 of 31) AluSx|SINE|Alu -48451 NM_001368772 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 214.667-42 chr9 8444248 8444695 + 0.5 NA intron (NM_001171025, intron 16 of 28) intron (NM_001171025, intron 16 of 28) 289475 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 115.167-85 chr5 65441686 65442154 + 0.5 NA intron (NR_135689, intron 7 of 25) L1MEc|LINE|L1 40000 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 128.5-72 chr7 23488383 23488941 + 0.5 NA Intergenic AluSx|SINE|Alu -1726 NR_026676 256355 Hs.367935 NR_026676 ENSG00000232818 RPS2P32 RPS2_14_794 ribosomal protein S2 pseudogene 32 pseudo 161-55 chr5 171710825 171711449 + 0.5 NA Intergenic Intergenic -74735 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 158.167-45 chr6 133293503 133294031 + 0.5 NA intron (NM_172103, intron 2 of 18) AluJb|SINE|Alu 52268 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 163-45 chr4 167249024 167249495 + 0.5 NA Intergenic MIR3|SINE|MIR -14669 NM_001251967 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 174.333-26 chr19 29771905 29772486 + 0.5 NA Intergenic Intergenic -39796 NM_001322261 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 132.5-33 chr15 58971506 58971962 + 0.5 NA Intergenic AluJb|SINE|Alu -15929 NM_017610 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 143.667-8 chr1 119393624 119394002 + 0.5 NA exon (NM_016527, exon 8 of 8) exon (NM_016527, exon 8 of 8) -21118 NM_001166120 3284 Hs.654399 NM_000198 ENSG00000203859 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 120.667-19 chr11 66500057 66500510 + 0.5 NA intron (NM_130443, intron 16 of 17) AluSx1|SINE|Alu -10352 NM_024649 582 Hs.502915 NM_024649 ENSG00000174483 BBS1 BBS2L2 Bardet-Biedl syndrome 1 protein-coding 170.5-50 chr4 26203084 26203780 + 0.5 NA Intergenic L2a|LINE|L2 -116278 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 129.833-78 chrX 67593993 67594487 + 0.5 NA intron (NM_001011645, intron 2 of 8) AluJo|SINE|Alu 49617 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 140.5-41 chr20 21250988 21251384 + 0.5 NA Intergenic Intergenic -32897 NR_109956 101929591 Hs.656066 NR_109956 ENSG00000232712 KIZ-AS1 - KIZ antisense RNA 1 ncRNA 114.5-38 chr16 53141303 53141558 + 0.5 NA intron (NM_001352127, intron 1 of 38) intron (NM_001352127, intron 1 of 38) 10418 NM_001352127 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 113.833-9 chr11 4704403 4704811 + 0.5 NA Intergenic Intergenic -6754 NM_030774 81285 Hs.501758 NM_030774 ENSG00000167332 OR51E2 HPRAJ|OR51E3P|OR52A2|PSGR olfactory receptor family 51 subfamily E member 2 protein-coding 141.167-43 chr2 138292130 138292712 + 0.5 NA Intergenic Intergenic 190537 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 147.333-23 chr14 40013037 40013411 + 0.5 NA Intergenic Intergenic -580724 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 118.667-119 chr9 29320445 29320737 + 0.5 NA Intergenic MIR3|SINE|MIR -106990 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 145.5-65 chr5 106240700 106241201 + 0.5 NA Intergenic Intergenic 770064 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 129.667-80 chr5 33995266 33995785 + 0.5 NA intron (NR_037951, intron 8 of 8) MER44C|DNA|TcMar-Tigger -10832 NM_001012509 51151 Hs.278962 NM_016180 ENSG00000164175 SLC45A2 1A1|AIM1|MATP|OCA4|SHEP5 solute carrier family 45 member 2 protein-coding 120-51 chr2 33774606 33775112 + 0.5 NA intron (NR_126403, intron 1 of 5) L1M6|LINE|L1 -46642 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 115.167-74 chr4 76164054 76164473 + 0.5 NA intron (NM_001204255, intron 7 of 8) AluJb|SINE|Alu -15748 NR_103781 53371 Hs.430435 NM_017426 ENSG00000138750 NUP54 - nucleoporin 54 protein-coding 113.833-32 chr18 58024196 58024642 + 0.5 NA Intergenic Intergenic -19807 NM_001243960 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 138.667-5 chr1 223875240 223875677 + 0.5 NA Intergenic AluSx|SINE|Alu -29486 NM_005426 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 140.167-71 chr8 107270591 107271208 + 0.5 NA intron (NM_001199859, intron 7 of 8) intron (NM_001199859, intron 7 of 8) 65616 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 166.333-37 chr2 89807010 89807606 + 0.5 NA Intergenic Intergenic -169401 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 151.333-41 chr19 27870760 27871260 + 0.5 NA intron (NR_146734, intron 1 of 7) L1MC1|LINE|L1 -77070 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 115.833-40 chr20 14302177 14302615 + 0.5 NA intron (NM_001351663, intron 3 of 17) MLT1E2|LTR|ERVL-MaLR 35216 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 127.333-95 chr5 172542133 172542387 + 0.5 NA Intergenic MIR|SINE|MIR 16754 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 152.833-2 chr1 83001963 83002336 + 0.5 NA intron (NR_147074, intron 5 of 10) intron (NR_147074, intron 5 of 10) -15941 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 141.167-22 chr13 61969797 61970288 + 0.5 NA Intergenic MER115|DNA|hAT-Tip100 59506 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 133.667-56 chr20 9627446 9627915 + 0.5 NA intron (NM_020341, intron 4 of 10) AluSx1|SINE|Alu -112682 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 172.667-49 chr3 1021588 1022046 + 0.5 NA Intergenic MIR3|SINE|MIR -71207 NM_001349361 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 139.167-55 chr3 24766883 24767392 + 0.5 NA Intergenic Intergenic -62186 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 115.333-19 chr12 51476951 51477302 + 0.5 NA intron (NM_001039960, intron 16 of 24) AluSp|SINE|Alu 52009 NM_001258403 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 148-34 chr16 9995809 9996222 + 0.5 NA intron (NM_001134408, intron 2 of 13) GA-rich|Low_complexity|Low_complexity 186052 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 180.167-36 chr3 160991499 160991887 + 0.5 NA intron (NM_001317912, intron 3 of 4) intron (NM_001317912, intron 3 of 4) 113039 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 161-27 chr2 9282759 9283090 + 0.5 NA intron (NM_003887, intron 2 of 27) intron (NM_003887, intron 2 of 27) 76112 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 144.667-50 chr2 36171200 36171704 + 0.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR 184118 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 122.833-14 chr11 33883483 33883913 + 0.5 NA intron (NM_005574, intron 1 of 5) MIRb|SINE|MIR 8378 NM_005574 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 LMO-2|RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 131.167-58 chr4 155674026 155674513 + 0.5 NA intron (NM_000856, intron 3 of 10) AluSg7|SINE|Alu 6607 NM_001130684 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 155.167-15 chr15 55322254 55322615 + 0.5 NA intron (NM_004855, intron 3 of 11) intron (NM_004855, intron 3 of 11) 3212 NM_004855 9488 Hs.612814 NM_004855 ENSG00000069943 PIGB GPI-MT-III|PIG-B phosphatidylinositol glycan anchor biosynthesis class B protein-coding 161.333-58 chr5 38829041 38829574 + 0.5 NA intron (NR_109951, intron 1 of 3) intron (NR_109951, intron 1 of 3) 16522 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 120.667-116 chr8 90469379 90469938 + 0.5 NA Intergenic Intergenic 136405 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 189.167-40 chr5 141468070 141468542 + 0.5 NA intron (NM_003735, intron 1 of 3) AluSq2|SINE|Alu -7660 NM_002588 5098 Hs.368160 NM_002588 ENSG00000240184 PCDHGC3 PC43|PCDH-GAMMA-C3|PCDH2 protocadherin gamma subfamily C, 3 protein-coding 121.667-10 chr10 68429059 68429532 + 0.5 NA intron (NM_001080449, intron 14 of 20) AluSp|SINE|Alu -22001 NM_001042417 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 145.833-25 chr15 34659456 34659819 + 0.5 NA Intergenic L2|LINE|L2 -3873 NR_146869 105370762 Hs.569462 NR_146869 ENSG00000261304 LINC02252 - long intergenic non-protein coding RNA 2252 ncRNA 127.167-84 chr8 18958173 18958666 + 0.5 NA intron (NM_015310, intron 1 of 15) intron (NM_015310, intron 1 of 15) 55284 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 148.167-85 chr8 133072838 133073274 + 0.5 NA intron (NM_001045557, intron 1 of 7) MIRb|SINE|MIR -12702 NM_006748 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 142-87 chr7 49072014 49072361 + 0.5 NA Intergenic Intergenic 147640 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 128.333-32 chr14 26257283 26257724 + 0.5 NA Intergenic L2a|LINE|L2 295927 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 144.333-38 chr17 50349886 50350612 + 0.5 NA intron (NR_110010, intron 1 of 9) MIRb|SINE|MIR 4123 NM_022167 64132 Hs.463416 NM_022167 ENSG00000015532 XYLT2 PXYLT2|SOS|XT-II|XT2|xylT-II xylosyltransferase 2 protein-coding 272.833-12 chr9 69140322 69141246 + 0.5 NA intron (NM_001369871, intron 1 of 24) intron (NM_001369871, intron 1 of 24) 17769 NM_001369871 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 212.333-18 chr2 42607303 42607854 + 0.5 NA intron (NM_001330443, intron 3 of 16) AluJb|SINE|Alu 38946 NM_001330444 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 200-49 chr3 107341994 107342550 + 0.5 NA Intergenic MER51B|LTR|ERV1 -35167 NM_032600 84692 Hs.164799 NM_032600 ENSG00000138483 CCDC54 NYD-SP17|SP17 coiled-coil domain containing 54 protein-coding 208-17 chr18 58774331 58774865 + 0.5 NA Intergenic Intergenic -39282 NR_146904 105372147 Hs.210837 NR_146904 ENSG00000267593 LINC01926 - long intergenic non-protein coding RNA 1926 ncRNA 205.833-13 chr16 63165117 63165571 + 0.5 NA Intergenic Intergenic -1128906 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 119.333-22 chr12 13891203 13891726 + 0.5 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 88892 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 138.5-34 chr18 11465977 11466547 + 0.5 NA TTS (NR_146901) TTS (NR_146901) 11784 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 153.5-35 chr2 164798856 164799420 + 0.5 NA intron (NM_001365670, intron 2 of 13) L1ME1|LINE|L1 -41611 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 125.333-24 chr10 116154427 116154933 + 0.5 NA intron (NM_145793, intron 3 of 8) L1ME3A|LINE|L1 40109 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 168.5-61 chr6 137297660 137298268 + 0.5 NA Intergenic Intergenic -78534 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 154-92 chrX 46508124 46508734 + 0.5 NA intron (NM_001190417, intron 5 of 5) L1ME3Cz|LINE|L1 36992 NM_001146291 641339 Hs.636105 NM_001039891 ENSG00000251192 ZNF674 MRX92|ZNF673B zinc finger protein 674 protein-coding 140-49 chr3 41322284 41322640 + 0.5 NA intron (NR_136342, intron 33 of 34) MER50|LTR|ERV1 122957 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 113.667-13 chr10 19377622 19377879 + 0.5 NA intron (NM_001142308, intron 26 of 39) intron (NM_001142308, intron 26 of 39) 328949 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 119-90 chr7 19352919 19353290 + 0.5 NA Intergenic L1MC5a|LINE|L1 -207683 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 119.167-28 chr17 7986175 7986603 + 0.5 NA Intergenic AluSx1|SINE|Alu -16281 NM_000180 3000 Hs.592109 NM_000180 ENSG00000132518 GUCY2D CACD1|CORD5|CORD6|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC guanylate cyclase 2D, retinal protein-coding 136-54 chr4 41683469 41683789 + 0.5 NA intron (NM_001330786, intron 18 of 22) intron (NM_001330786, intron 18 of 22) 65341 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 146.333-82 chr5 88749337 88749687 + 0.5 NA intron (NM_001131005, intron 6 of 10) intron (NM_001131005, intron 6 of 10) 35999 NM_001364356 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 129.5-11 chr10 61490352 61490776 + 0.5 NA intron (NR_120643, intron 5 of 5) intron (NR_120643, intron 5 of 5) 10523 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 153.667-25 chr14 99918592 99919057 + 0.5 NA intron (NM_004434, intron 16 of 21) AluJr4|SINE|Alu -52598 NM_001330221 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 152.833-64 chr7 8420970 8421496 + 0.5 NA Intergenic Intergenic -12376 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 146.5-75 chr6 69617769 69618222 + 0.5 NA Intergenic LTR71B|LTR|ERV1 178471 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 170.333-50 chr3 134908709 134909238 + 0.5 NA intron (NM_004441, intron 1 of 15) L3|LINE|CR1 113713 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 126.5-89 chr9 72414107 72414426 + 0.5 NA Intergenic AluSg|SINE|Alu -49058 NM_001102420 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 192.667-51 chr7 42948355 42948860 + 0.5 NA Intergenic ERV24B_Prim-int|LTR|ERV1 16231 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 171.667-45 chr20 49216784 49217251 + 0.5 NA intron (NM_001319135, intron 1 of 14) LTR50|LTR|ERVL -2278 NM_017895 55661 Hs.65234 NM_017895 ENSG00000124228 DDX27 DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1 DEAD-box helicase 27 protein-coding 116.333-62 chr3 82438487 82438828 + 0.5 NA intron (NR_147146, intron 4 of 8) L1MC4|LINE|L1 452515 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 124.833-53 chr21 30220416 30220946 + 0.5 NA Intergenic Intergenic -4584 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 119.5-33 chr14 103460464 103460788 + 0.5 NA intron (NM_001128920, intron 6 of 15) intron (NM_001128920, intron 6 of 15) 62204 NM_001823 1152 Hs.173724 NM_001823 ENSG00000166165 CKB B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29 creatine kinase B protein-coding 185.667-46 chr6 69550039 69550594 + 0.5 NA Intergenic L1M5|LINE|L1 246150 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 115.333-11 chr10 32468792 32469171 + 0.5 NA intron (NR_109827, intron 6 of 8) intron (NR_109827, intron 6 of 8) 22841 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 156.333-72 chr4 147335372 147335787 + 0.5 NA Intergenic Intergenic 9138 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 138.167-56 chr3 197272506 197273128 + 0.5 NA intron (NM_001366216, intron 4 of 23) L1ME3A|LINE|L1 21131 NR_039960 100616216 NR_039960 ENSG00000265850 MIR4797 - microRNA 4797 ncRNA 142.833-40 chr2 112089992 112090519 + 0.5 NA intron (NM_001329914, intron 10 of 18) intron (NM_001329914, intron 10 of 18) 34986 NM_032824 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 124-4 chr1 88803889 88804271 + 0.5 NA intron (NM_001320707, intron 8 of 20) intron (NM_001320707, intron 8 of 20) 87487 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 178.333-44 chr7 8090377 8091067 + 0.5 NA Intergenic MER58A|DNA|hAT-Charlie 121926 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 125.333-88 chr4 81484291 81484730 + 0.5 NA Intergenic Intergenic -12603 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 232.167-2 chr1 151617997 151618814 + 0.5 NA intron (NM_030918, intron 1 of 11) intron (NM_030918, intron 1 of 11) 6355 NM_030918 81609 Hs.192326 NM_030918 ENSG00000143376 SNX27 MRT1|MY014 sorting nexin 27 protein-coding 129.833-16 chr13 32019546 32020016 + 0.5 NA Intergenic Intergenic 11858 NR_103839 100507099 Hs.536364 NR_103839 FRY-AS1 - FRY antisense RNA 1 ncRNA 133.333-42 chr16 79552938 79553420 + 0.5 NA Intergenic Intergenic 47558 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 153.5-28 chr18 37423448 37423970 + 0.5 NA intron (NM_001353724, intron 2 of 12) intron (NM_001353724, intron 2 of 12) 42795 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA 142.833-45 chr3 113036986 113037288 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -17466 NM_001319109 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 116.333-82 chr5 58501240 58501651 + 0.5 NA Intergenic Intergenic 10010 NM_001304428 202309 Hs.547697 NM_152687 ENSG00000175857 GAPT C5orf29 GRB2 binding adaptor protein, transmembrane protein-coding 113.333-37 chr14 36649288 36649684 + 0.5 NA Intergenic Intergenic -8082 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 115-83 chr8 82847719 82848009 + 0.5 NA Intergenic Intergenic -64240 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 133.333-128 chr9 96567967 96568448 + 0.5 NA intron (NR_147239, intron 1 of 14) intron (NR_147239, intron 1 of 14) -1231 NM_001351570 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 140.833-26 chr18 11583365 11583754 + 0.5 NA Intergenic Intergenic -25999 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 192.667-55 chr8 103594041 103594733 + 0.5 NA intron (NM_001348497, intron 1 of 22) Tigger17a|DNA|TcMar-Tigger -92477 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 138.667-57 chr3 58994623 58995020 + 0.5 NA intron (NR_147235, intron 4 of 6) A-rich|Low_complexity|Low_complexity 55204 NM_001351532 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 126.333-82 chr4 107148859 107149366 + 0.5 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -112799 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 300 chr1 143263361 143264187 + 0.5 NA Intergenic Intergenic 158818 NR_027354 645166 Hs.744183 NR_027354 LSP1P5 - LSP1 pseudogene 5 pseudo 130.833-76 chrX 39101205 39101647 + 0.5 NA Intergenic L1PA13|LINE|L1 225936 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 138.333-111 chr8 126299943 126300273 + 0.5 NA Intergenic Intergenic -25387 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 202.167-18 chr2 99158455 99158913 + 0.5 NA intron (NM_145198, intron 3 of 3) intron (NM_145198, intron 3 of 3) 3610 NM_001204830 51601 Hs.719172 NM_015929 ENSG00000144182 LIPT1 LIPT1D lipoyltransferase 1 protein-coding 131.5 chr1 45048267 45048658 + 0.5 NA intron (NM_020883, intron 5 of 13) L2a|LINE|L2 36208 NR_158184 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 167-17 chr11 81028275 81028776 + 0.5 NA Intergenic Intergenic -265722 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 125.5-70 chr6 106778512 106778982 + 0.5 NA intron (NR_147986, intron 1 of 3) L1PA16|LINE|L1 -5378 NR_030314 693172 NR_030314 ENSG00000207577 MIR587 MIRN587|hsa-mir-587 microRNA 587 ncRNA 224.333-30 chr7 41145636 41146444 + 0.5 NA Intergenic Intergenic 44436 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 181-38 chr2 210745119 210745514 + 0.5 NA Intergenic Intergenic 127745 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 134.667-62 chr22 34180821 34181125 + 0.5 NA Intergenic LTR67B|LTR|ERVL -258085 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 115.167-6 chr1 91980108 91980419 + 0.5 NA intron (NM_001726, intron 8 of 18) AluJo|SINE|Alu 28111 NM_001726 676 Hs.482520 NM_001726 ENSG00000137948 BRDT BRD6|CT9|SPGF21 bromodomain testis associated protein-coding 119.667-53 chr2 190000147 190000514 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 62399 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 181.667-39 chr3 142344282 142344806 + 0.5 NA intron (NM_019001, intron 33 of 41) L1MB7|LINE|L1 103493 NM_019001 54464 Hs.435103 NM_019001 ENSG00000114127 XRN1 SEP1 5'-3' exoribonuclease 1 protein-coding 164.167-65 chr8 133999780 134000249 + 0.5 NA Intergenic L2c|LINE|L2 113518 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 122.5-25 chr12 128772512 128773024 + 0.5 NA Intergenic FLAM_C|SINE|Alu 51190 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 134.333-48 chr17 67882314 67882695 + 0.5 NA intron (NM_004459, intron 5 of 29) L1MC5a|LINE|L1 57001 NM_182641 2186 Hs.444200 NM_004459 ENSG00000171634 BPTF FAC1|FALZ|NEDDFL|NURF301 bromodomain PHD finger transcription factor protein-coding 181.333-21 chr17 17068333 17069047 + 0.5 NA intron (NM_201274, intron 1 of 23) AluSg|SINE|Alu 25930 NM_201274 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 125.833-12 chr11 22038891 22039415 + 0.5 NA Intergenic AluSz6|SINE|Alu -153932 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 132.5-69 chr5 13015284 13015718 + 0.5 NA intron (NR_147005, intron 2 of 4) AluSg|SINE|Alu 17385 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 126-55 chr20 56078276 56078533 + 0.5 NA Intergenic Intergenic -72885 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 130.167-71 chr7 48936426 48936848 + 0.5 NA Intergenic Intergenic 12090 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 147-56 chr4 15382355 15382729 + 0.5 NA intron (NM_001135171, intron 1 of 2) MIRc|SINE|MIR 7991 NM_001135171 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 145.167-9 chr10 64313302 64313749 + 0.5 NA Intergenic Intergenic -512003 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 116.333-85 chr5 116694115 116694431 + 0.5 NA Intergenic Intergenic 67936 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 134.5-29 chr14 59126426 59126795 + 0.5 NA Intergenic AluSx|SINE|Alu -62057 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 114.833-56 chr5 162047145 162047525 + 0.5 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -20307 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 165-33 chr3 23788671 23789060 + 0.5 NA Intergenic AluJb|SINE|Alu -17090 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 145.333-49 chr3 80950720 80951160 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -42928 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 121.333-13 chr11 24147304 24147592 + 0.5 NA Intergenic L1PA14|LINE|L1 -349605 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 120.667-39 chr14 88236825 88237200 + 0.5 NA intron (NM_138317, intron 3 of 6) Tigger1|DNA|TcMar-Tigger 33899 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 200.667-46 chr5 135945654 135946339 + 0.5 NA TTS (NM_002302) TTS (NM_002302) 8987 NM_002302 3950 Hs.512580 NM_002302 ENSG00000145826 LECT2 chm-II|chm2 leukocyte cell derived chemotaxin 2 protein-coding 123.5-3 chr1 76954434 76954873 + 0.5 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) 87173 NM_001320273 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 168.333-6 chr11 72156312 72156901 + 0.5 NA Intergenic MER20B|DNA|hAT-Charlie 20881 NM_001318045 2352 Hs.352 NM_000804 ENSG00000110203 FOLR3 FR-G|FR-gamma|FRgamma|gamma-hFR folate receptor gamma protein-coding 140-84 chr9 34141671 34142064 + 0.5 NA Intergenic Intergenic -15169 NM_015397 25853 Hs.493750 NM_015397 ENSG00000198876 DCAF12 CT102|KIAA1892|TCC52|WDR40A DDB1 and CUL4 associated factor 12 protein-coding 145.833-60 chr4 65850311 65850704 + 0.5 NA Intergenic Intergenic -180012 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 123.333-26 chr11 77028985 77029290 + 0.5 NA Intergenic AluSg|SINE|Alu -5261 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 156.833-54 chr7 82902489 82902979 + 0.5 NA exon (NM_014510, exon 9 of 20) exon (NM_014510, exon 9 of 20) 260150 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 135-12 chr10 81231137 81231642 + 0.5 NA Intergenic Tigger4|DNA|TcMar-Tigger 581592 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 187-36 chr5 126384087 126384668 + 0.5 NA intron (NM_001146319, intron 1 of 13) intron (NM_001146319, intron 1 of 13) 24257 NM_001146319 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 147-89 chr9 31180839 31181289 + 0.5 NA Intergenic L1PA5|LINE|L1 200426 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 150-22 chr14 63861398 63861865 + 0.5 NA intron (NM_015180, intron 1 of 114) AluJb|SINE|Alu 8627 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 142-21 chr11 26051995 26052316 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR -136968 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 132.5-79 chr5 146708924 146709210 + 0.5 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 169718 NR_073526 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 118.333-112 chr8 29521833 29522127 + 0.5 NA Intergenic Intergenic -171296 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 137-39 chr16 52206295 52206715 + 0.5 NA Intergenic AluJo|SINE|Alu -52059 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 114.667-74 chr3 33493507 33493834 + 0.5 NA Intergenic Intergenic -53265 NM_001128161 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 127.167-93 chr8 137449066 137449417 + 0.5 NA Intergenic L2c|LINE|L2 -35653 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 138-21 chr12 1750778 1751103 + 0.5 NA intron (NM_024551, intron 1 of 7).2 L1M5|LINE|L1 59870 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 122.5-77 chr5 174660004 174660478 + 0.5 NA Intergenic Intergenic -64341 NM_001363626 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 154.5-55 chr5 23942202 23942600 + 0.5 NA Intergenic THE1A-int|LTR|ERVL-MaLR -8947 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 134-41 chr14 50269810 50270367 + 0.5 NA intron (NM_024884, intron 6 of 9) intron (NM_024884, intron 6 of 9) 29858 NR_039726 100616261 NR_039726 ENSG00000264712 MIR4504 - microRNA 4504 ncRNA 145.833-13 chr10 113732034 113732497 + 0.5 NA Intergenic AluSx1|SINE|Alu -19417 NM_001193435 79949 Hs.228320 NM_024889 ENSG00000148735 PLEKHS1 C10orf81|HEL185 pleckstrin homology domain containing S1 protein-coding 125.833-56 chr3 40201022 40201374 + 0.5 NA intron (NM_001284424, intron 10 of 15) L4_A_Mam|LINE|RTE-X 101187 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 116.333-3 chr1 65878867 65879326 + 0.5 NA intron (NM_002600, intron 1 of 16) LTR33A_|LTR|ERVL -34149 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 128-39 chr18 58160453 58161017 + 0.5 NA intron (NM_001144965, intron 1 of 30) intron (NM_001144965, intron 1 of 30) 11415 NM_001144971 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 129.667-88 chr5 178587529 178587851 + 0.5 NA intron (NM_173465, intron 1 of 28) intron (NM_173465, intron 1 of 28) 2703 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 140-46 chr21 21645735 21646270 + 0.5 NA Intergenic Intergenic 91317 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 166.667-30 chr21 28398184 28398587 + 0.5 NA Intergenic Intergenic -140933 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 151.5-8 chr1 193523682 193524130 + 0.5 NA Intergenic Intergenic 219161 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 138.5-40 chr2 36911694 36912068 + 0.5 NA intron (NM_003162, intron 3 of 17) L2c|LINE|L2 54655 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 115.167-4 chr1 44061634 44062057 + 0.5 NA Intergenic AluSx1|SINE|Alu -30383 NM_001328626 6536 Hs.442590 NM_006934 ENSG00000196517 SLC6A9 GCENSG|GLYT1 solute carrier family 6 member 9 protein-coding 144.833-38 chr20 18431158 18431532 + 0.5 NA intron (NM_001367611, intron 9 of 20) intron (NM_001367611, intron 9 of 20) 35685 NM_001367613 55184 Hs.472225 NM_018152 ENSG00000089091 DZANK1 ANKRD64|C20orf12|C20orf84 double zinc ribbon and ankyrin repeat domains 1 protein-coding 163.667-59 chr4 166182609 166183120 + 0.5 NA Intergenic Intergenic 309627 NM_001204760 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 144.833-68 chr7 79868482 79869115 + 0.5 NA Intergenic Intergenic -266033 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 130.167-2 chr1 116223403 116223768 + 0.5 NA Intergenic FLAM_C|SINE|Alu 111830 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 180.167-25 chr2 160684595 160685222 + 0.5 NA Intergenic Intergenic -191101 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 117.833-35 chr17 27563492 27563978 + 0.5 NA intron (NM_014238, intron 3 of 20) L2a|LINE|L2 -67453 NR_024043 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 161.167-37 chr20 12720098 12720569 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 216630 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 245.833-9 chr2 109030456 109031256 + 0.5 NA Intergenic FLAM_A|SINE|Alu -41636 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 134.167-42 chr2 52190822 52191371 + 0.5 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -179552 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 139.5-65 chr7 4901503 4901940 + 0.5 NA intron (NR_072989, intron 8 of 8) intron (NR_072989, intron 8 of 8) -18005 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 123.167-68 chr4 31321931 31322273 + 0.5 NA Intergenic L2a|LINE|L2 150958 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 190.667-30 chr3 33766715 33767428 + 0.5 NA Intergenic L1MA1|LINE|L1 -31500 NM_001162429 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 148.667-49 chr3 186107532 186107890 + 0.5 NA intron (NM_004454, intron 1 of 12) CpG 1378 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 121.667 chr1 9567360 9567657 + 0.5 NA intron (NM_032315, intron 3 of 6) intron (NM_032315, intron 3 of 6) -21403 NM_001010866 199953 Hs.632365 NM_001010866 ENSG00000188807 TMEM201 Ima1|NET5|SAMP1 transmembrane protein 201 protein-coding 125.5-31 chr17 62714069 62714387 + 0.5 NA intron (NM_001288780, intron 9 of 10) intron (NM_001288780, intron 9 of 10) 8022 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 158.833-12 chr11 98465561 98465921 + 0.5 NA Intergenic L1MCa|LINE|L1 -555208 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 129.167-40 chr2 115860928 115861510 + 0.5 NA Intergenic L1M4|LINE|L1 517404 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 120.667-72 chr21 42894696 42895098 + 0.5 NA intron (NM_001001503, intron 1 of 2) L2a|LINE|L2 1588 NM_021075 4731 Hs.473937 NM_021075 ENSG00000160194 NDUFV3 CI-10k|CI-9KD NADH:ubiquinone oxidoreductase subunit V3 protein-coding 129-37 chr19 52128238 52128643 + 0.5 NA intron (NM_178523, intron 2 of 3) intron (NM_178523, intron 2 of 3) 11498 NR_135823 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 181.667-62 chr7 46273662 46274189 + 0.5 NA Intergenic MIRc|SINE|MIR -352653 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 123.167-102 chrX 26974885 26975331 + 0.5 NA Intergenic L1ME3A|LINE|L1 416771 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 114-72 chr4 16135868 16136185 + 0.5 NA Intergenic MER77|LTR|ERVL -52003 NM_006017 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 117-22 chr11 82036733 82037051 + 0.5 NA intron (NR_120571, intron 5 of 7) intron (NR_120571, intron 5 of 7) -146056 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 115.5-43 chr16 8654083 8654559 + 0.5 NA Intergenic Intergenic -20296 NM_020686 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 129-97 chr8 107440562 107440870 + 0.5 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 57202 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 181-65 chr9 29744710 29745330 + 0.5 NA Intergenic Intergenic -531419 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 115.5-23 chr11 43777692 43778095 + 0.5 NA intron (NM_016142, intron 3 of 10) L1PA3|LINE|L1 97155 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 120-16 chr10 110992407 110992735 + 0.5 NA intron (NM_007373, intron 3 of 8) intron (NM_007373, intron 3 of 8) 3645 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 131.833-6 chr10 43057468 43057818 + 0.5 NA Intergenic Intergenic -19384 NM_020630 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 182.333-22 chr16 73044103 73044626 + 0.5 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 3764 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 118.5-59 chr20 32156107 32156644 + 0.5 NA intron (NM_001363731, intron 13 of 17) L1ME4a|LINE|L1 33985 NR_002781 128854 Hs.647447 NR_002781 ENSG00000235217 TSPY26P TSPYL3|bA392M18.1 testis specific protein Y-linked 26, pseudogene pseudo 164.833-53 chr9 81458954 81459547 + 0.5 NA Intergenic Intergenic 230285 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 180.167-41 chr4 66556489 66556949 + 0.5 NA Intergenic MER48|LTR|ERV1 279895 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 119-61 chr21 15630531 15630834 + 0.5 NA Intergenic L1MB3|LINE|L1 -99252 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 192.833-24 chr3 18405148 18405638 + 0.5 NA intron (NM_001131010, intron 5 of 10) intron (NM_001131010, intron 5 of 10) 19946 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 152.333-75 chrX 23305206 23305833 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -12373 NR_073010 100873065 Hs.628459 NR_046436 PTCHD1-AS DDX53-AS1|PTCHD1AS1|PTCHD1AS2 PTCHD1 antisense RNA (head to head) ncRNA 152.167-14 chr11 82978573 82978929 + 0.5 NA 3' UTR (NM_001286060, exon 5 of 5) 3' UTR (NM_001286060, exon 5 of 5) 55523 NM_001286059 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 136.5-10 chr10 6097086 6097369 + 0.5 NA intron (NM_032905, intron 2 of 11) intron (NM_032905, intron 2 of 11) 7881 NM_001145547 84991 Hs.498548 NM_032905 ENSG00000134453 RBM17 SPF45 RNA binding motif protein 17 protein-coding 239.167-6 chr11 108140520 108141217 + 0.5 NA intron (NM_000019, intron 7 of 11) MLT1K|LTR|ERVL-MaLR 19301 NM_000019 38 Hs.232375 NM_000019 ENSG00000075239 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 135.667-3 chr1 81681502 81681831 + 0.5 NA intron (NM_001366008, intron 3 of 26) intron (NM_001366008, intron 3 of 26) -18104 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 144.5-32 chr15 68232512 68232967 + 0.5 NA Intergenic LTR16E2|LTR|ERVL -3011 NM_017882 54982 Hs.584921 NM_017882 ENSG00000128973 CLN6 CLN4A|HsT18960|nclf CLN6 transmembrane ER protein protein-coding 192-6 chr10 31405466 31406092 + 0.5 NA intron (NM_001323646, intron 4 of 11) L1PA7|LINE|L1 -6024 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 144-25 chr17 77187701 77188184 + 0.5 NA intron (NM_001144001, intron 1 of 14) AluJb|SINE|Alu 2729 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 125-51 chr21 43762272 43762559 + 0.5 NA TTS (NM_001331030) TTS (NM_001331030) 13960 NM_000100 1476 Hs.695 NM_000100 ENSG00000160213 CSTB CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD cystatin B protein-coding 119.5-81 chr5 83616162 83616528 + 0.5 NA Intergenic Intergenic -54031 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 119.667-15 chr12 13576397 13576731 + 0.5 NA intron (NM_000834, intron 9 of 12) (TTTTCTT)n|Simple_repeat|Simple_repeat -199819 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 127.333-75 chr3 25118064 25118426 + 0.5 NA intron (NM_001290216, intron 3 of 10) L4_A_Mam|LINE|RTE-X -222557 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 122-10 chr10 104227344 104227816 + 0.5 NA intron (NM_025145, intron 2 of 37) L1ME4a|LINE|L1 4797 NM_025145 80217 Hs.288927 NM_025145 ENSG00000197748 CFAP43 C10orf79|SPGF19|WDR96|bA373N18.2 cilia and flagella associated protein 43 protein-coding 115.333-57 chr2 194509144 194509679 + 0.5 NA Intergenic Intergenic 165142 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 120.667-36 chr14 32177133 32177604 + 0.5 NA Intergenic L1PB4|LINE|L1 -24677 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 125.5-17 chr12 43821178 43821532 + 0.5 NA Intergenic AluJb|SINE|Alu -14506 NM_001286211 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 116-20 chr13 31664218 31664516 + 0.5 NA Intergenic Intergenic -75159 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 144-46 chr3 37054832 37055167 + 0.5 NA intron (NM_006309, intron 26 of 27) intron (NM_006309, intron 26 of 27) 61649 NM_001354627 4292 Hs.195364 NM_000249 ENSG00000076242 MLH1 COCA2|FCC2|HNPCC|HNPCC2|hMLH1 mutL homolog 1 protein-coding 174.333-66 chr8 89268601 89269164 + 0.5 NA Intergenic MLT2F|LTR|ERVL 488829 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 116.5-36 chr2 56689803 56690120 + 0.5 NA Intergenic Intergenic -504191 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 156.167-63 chr9 7831662 7832099 + 0.5 NA Intergenic HERVL40-int|LTR|ERVL -32102 NM_001318059 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 131.333-23 chr13 76316826 76317201 + 0.5 NA Intergenic Intergenic -381881 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 187.333-38 chr2 171458560 171459097 + 0.5 NA intron (NM_001164821, intron 8 of 11) intron (NM_001164821, intron 8 of 11) -24025 NM_024770 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 183.833-41 chr7 104338991 104339680 + 0.5 NA intron (NM_199000, intron 1 of 2) MIRb|SINE|MIR 10679 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 167.667-16 chr11 63816721 63817256 + 0.5 NA intron (NM_138471, intron 1 of 5) AluJo|SINE|Alu 3532 NM_138471 144097 Hs.502793 NM_138471 ENSG00000168005 SPINDOC C11orf84|SPIN-DOC spindlin interactor and repressor of chromatin binding protein-coding 160.833-37 chr4 102633771 102634092 + 0.5 NA intron (NM_005908, intron 16 of 16) intron (NM_005908, intron 16 of 16) 127037 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 155-18 chr12 80891848 80892187 + 0.5 NA intron (NM_004664, intron 1 of 5) L2c|LINE|L2 43816 NR_030349 693203 NR_030349 ENSG00000208022 MIR618 MIRN618|hsa-mir-618|mir-618 microRNA 618 ncRNA 136.167-49 chr3 17478255 17478718 + 0.5 NA intron (NM_014744, intron 3 of 21) L1M4|LINE|L1 221534 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 194.5-8 chr14 57474081 57474782 + 0.5 NA intron (NM_018168, intron 5 of 5) intron (NM_018168, intron 5 of 5) 19426 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 156-63 chr5 4791142 4791639 + 0.5 NA Intergenic L1MC2|LINE|L1 17909 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 130.667-50 chr3 83626723 83627253 + 0.5 NA Intergenic Intergenic 1242587 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 130.333-57 chr22 36411633 36411967 + 0.5 NA Intergenic MIRc|SINE|MIR -23733 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 136.167-78 chr8 109077734 109078092 + 0.5 NA Intergenic Intergenic -8715 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 121.333-30 chr14 77821232 77821524 + 0.5 NA intron (NR_158988, intron 2 of 10) intron (NR_158988, intron 2 of 10) 21269 NR_158988 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 153.333-79 chr7 52768123 52768524 + 0.5 NA Intergenic L1ME1|LINE|L1 -267310 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 117.5-76 chr9 18497068 18497400 + 0.5 NA intron (NM_052866, intron 1 of 12) intron (NM_052866, intron 1 of 12) 23081 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 157.167-41 chr3 49603469 49603871 + 0.5 NA intron (NM_003458, intron 1 of 11) intron (NM_003458, intron 1 of 11) 49193 NM_003458 8927 Hs.194684 NM_003458 ENSG00000164061 BSN ZNF231 bassoon presynaptic cytomatrix protein protein-coding 163.667-68 chr8 28844018 28844530 + 0.5 NA intron (NR_026826, intron 2 of 14) AluJb|SINE|Alu 45641 NM_001172562 55756 Hs.162397 NM_018250 ENSG00000104299 INTS9 CPSF2L|INT9|RC74 integrator complex subunit 9 protein-coding 138.667-95 chr7 64762346 64762833 + 0.5 NA Intergenic Intergenic -31839 NM_001367574 7697 Hs.184080 NM_006524 ENSG00000197008 ZNF138 pHZ-32 zinc finger protein 138 protein-coding 120.167-24 chr15 88419531 88419869 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 47688 NM_022163 26589 Hs.534261 NM_022163 ENSG00000259494 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 226.833-2 chr10 14014366 14014944 + 0.5 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) -6105 NM_001318336 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 173.167-48 chr8 65265197 65265727 + 0.5 NA Intergenic AluJb|SINE|Alu -85122 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 205.333-5 chr1 163516694 163517183 + 0.5 NA Intergenic AluSx|SINE|Alu -93747 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 208.667-27 chr22 27629233 27629998 + 0.5 NA Intergenic MER53|DNA|hAT 172141 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 115.833-34 chr2 103034996 103035298 + 0.5 NA Intergenic L1MA9|LINE|L1 -50718 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 176-19 chr2 201084624 201085309 + 0.5 NA intron (NM_002491, intron 2 of 2) MIRb|SINE|MIR 12965 NM_001257102 4709 Hs.109760 NM_002491 ENSG00000119013 NDUFB3 B12|CI-B12|MC1DN25 NADH:ubiquinone oxidoreductase subunit B3 protein-coding 137.333-90 chr7 15668917 15669335 + 0.5 NA intron (NR_134258, intron 1 of 3) intron (NR_134258, intron 1 of 3) 1179 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 182.833-55 chr7 129391592 129392076 + 0.5 NA intron (NM_001130720, intron 4 of 16) intron (NM_001130720, intron 4 of 16) 15996 NM_001130722 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 162.333-39 chr20 13855687 13856312 + 0.5 NA intron (NM_001363752, intron 15 of 16) intron (NM_001363752, intron 15 of 16) 70971 NM_001039375 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 124-39 chr15 78271238 78271674 + 0.5 NA intron (NM_018602, intron 3 of 7) intron (NM_018602, intron 3 of 7) 5238 NM_001130183 55466 Hs.513053 NM_018602 ENSG00000140403 DNAJA4 MST104|MSTP104|PRO1472 DnaJ heat shock protein family (Hsp40) member A4 protein-coding 161-81 chrX 41679748 41680170 + 0.5 NA intron (NM_003688, intron 5 of 26) AluSz|SINE|Alu -9014 NM_001097579 2857 Hs.495989 NM_005300 ENSG00000171659 GPR34 LYPSR1 G protein-coupled receptor 34 protein-coding 126.333-87 chr5 63624268 63624747 + 0.5 NA Intergenic Intergenic 337785 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 203.5-37 chr7 18448537 18449204 + 0.5 NA intron (NM_001321896, intron 1 of 12) Tigger18a|DNA|TcMar-Tigger -46840 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 113.833-71 chr5 98263561 98263995 + 0.5 NA Intergenic Tigger3c|DNA|TcMar-Tigger -102539 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 177.5-36 chr2 16213514 16213882 + 0.5 NA Intergenic AluSz6|SINE|Alu 163271 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 153-37 chr3 125327984 125328383 + 0.5 NA intron (NM_001348426, intron 1 of 7) intron (NM_001348426, intron 1 of 7) 29097 NM_001348433 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 125-85 chr7 75845074 75845543 + 0.5 NA Intergenic Intergenic -21936 NM_001371193 145.167-81 chrUn_KI270746v1 26156 26660 + 0.5 NA NA Intergenic NA NA 272.333-14 chr2 159508785 159509699 + 0.5 NA intron (NM_001329858, intron 2 of 36) intron (NM_001329858, intron 2 of 36) -106052 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 147.833-7 chr10 37829587 37830093 + 0.5 NA non-coding (NR_147991, exon 5 of 5) non-coding (NR_147991, exon 5 of 5) 27770 NR_148000 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 138.667-86 chr6 64246437 64246948 + 0.5 NA intron (NM_001292009, intron 30 of 43) intron (NM_001292009, intron 30 of 43) 439856 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 124.5-26 chr15 57761140 57761593 + 0.5 NA Intergenic Intergenic 54652 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 127.833-55 chr4 89005020 89005349 + 0.5 NA intron (NM_014883, intron 3 of 23) L1PA14|LINE|L1 52001 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 161.833-42 chr9 31560791 31561250 + 0.5 NA Intergenic L1PB1|LINE|L1 -179530 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 178.333-45 chr7 38913135 38913644 + 0.5 NA Intergenic MER89|LTR|ERV1 -4189 NM_080631 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 143.5-39 chr2 61961509 61961894 + 0.5 NA intron (NM_152516, intron 1 of 2) HAL1|LINE|L1 56059 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 150.834-4 chr5 161114706 161115466 + 0.5 NA Intergenic Intergenic -176460 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 159.667-2 chr1 41454637 41455033 + 0.5 NA Intergenic MIRc|SINE|MIR 29848 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 118.333-117 chr8 130164681 130165074 + 0.5 NA intron (NM_001362925, intron 11 of 29) intron (NM_001362925, intron 11 of 29) -80109 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 144.333-37 chr17 42741294 42741853 + 0.5 NA intron (NM_001991, intron 1 of 20) intron (NM_001991, intron 1 of 20) 3467 NM_001321082 2145 Hs.194669 NM_001991 ENSG00000108799 EZH1 KMT6B enhancer of zeste 1 polycomb repressive complex 2 subunit protein-coding 156.5-61 chr4 106044745 106045357 + 0.5 NA 3' UTR (NM_001163435, exon 26 of 26) 3' UTR (NM_001163435, exon 26 of 26) -22573 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 136.833-26 chr15 80062729 80063093 + 0.5 NA intron (NM_001242914, intron 1 of 6) intron (NM_001242914, intron 1 of 6) 2751 NM_001242914 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 187.667-40 chr5 36869279 36869810 + 0.5 NA Intergenic LTR8|LTR|ERV1 7150 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 145.5-71 chr7 49438532 49438864 + 0.5 NA Intergenic (CATAC)n|Simple_repeat|Simple_repeat -334940 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 126.833-23 chr11 106158784 106159145 + 0.5 NA Intergenic Intergenic -26848 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 163.667-16 chr12 9369359 9369868 + 0.5 NA intron (NR_120479, intron 1 of 3) intron (NR_120479, intron 1 of 3) 2149 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 120.667-112 chr8 3091236 3091577 + 0.5 NA intron (NM_033225, intron 48 of 69) intron (NM_033225, intron 48 of 69) -362955 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 201.667-8 chr11 112456062 112456580 + 0.5 NA Intergenic L1MEi|LINE|L1 -25911 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 130.5-35 chr17 63001484 63001904 + 0.5 NA intron (NM_025185, intron 1 of 25) AluSz|SINE|Alu 35459 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 126.5-75 chr5 103516691 103517085 + 0.5 NA Intergenic Intergenic 25097 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 122-91 chr8 134584028 134584392 + 0.5 NA intron (NM_020863, intron 9 of 15) intron (NM_020863, intron 9 of 15) -13861 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 171.167-4 chr1 164397429 164397866 + 0.5 NA Intergenic L1MB7|LINE|L1 -161713 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 154.333-23 chr14 73872382 73872814 + 0.5 NA intron (NM_001371328, intron 3 of 8) L1MB8|LINE|L1 -14261 NR_040251 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 126.333-12 chr10 45626964 45627386 + 0.5 NA intron (NM_174890, intron 6 of 9) intron (NM_174890, intron 6 of 9) -32269 NM_145021 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 150.833-21 chr2 36190585 36190905 + 0.5 NA Intergenic L1MB7|LINE|L1 164825 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 113.667-35 chr12 59350544 59350986 + 0.5 NA Intergenic Intergenic -245264 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 148-15 chr10 66668647 66669133 + 0.5 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -257146 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 144.667-59 chr20 35273752 35274146 + 0.5 NA intron (NM_001355008, intron 1 of 14) intron (NM_001355008, intron 1 of 14) 4173 NM_001355003 101410538 Hs.356273 NM_001355003 ENSG00000126005 MMP24OS MMP24-AS1 MMP24 opposite strand protein-coding 151-40 chr21 27343568 27343997 + 0.5 NA Intergenic Intergenic -376694 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 118.5-63 chr22 26727200 26727620 + 0.5 NA intron (NR_110543, intron 2 of 5) MSTB|LTR|ERVL-MaLR 54567 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 135.833-11 chr12 90556075 90556433 + 0.5 NA Intergenic L1MC|LINE|L1 262936 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 159.5-10 chr11 34990181 34990551 + 0.5 NA intron (NM_003477, intron 9 of 10) intron (NM_003477, intron 9 of 10) 48529 NR_039836 100616437 NR_039836 ENSG00000251862 MIR1343 - microRNA 1343 ncRNA 116.167-43 chr22 49976491 49976947 + 0.5 NA Intergenic L1MB7|LINE|L1 13853 NR_106879 102465493 NR_106879 ENSG00000276753 MIR6821 hsa-mir-6821 microRNA 6821 ncRNA 144.833-44 chr3 20713575 20714136 + 0.5 NA Intergenic Intergenic 371387 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 128.833-77 chr5 173347297 173347644 + 0.5 NA promoter-TSS (NR_107023) promoter-TSS (NR_107023) 15 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 173.333-61 chr6 120951684 120952059 + 0.5 NA Intergenic Intergenic 382609 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 140-78 chr8 78201243 78201721 + 0.5 NA Intergenic Intergenic -314858 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 142.833-6 chr11 20413084 20413541 + 0.5 NA intron (NM_005788, intron 9 of 15) intron (NM_005788, intron 9 of 15) 25596 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 134.333-47 chr17 53913091 53913475 + 0.5 NA Intergenic Intergenic 90356 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 214.333-43 chr7 108232610 108233140 + 0.5 NA intron (NM_001371137, intron 5 of 25) intron (NM_001371137, intron 5 of 25) 10510 NM_001371181 184.167-37 chr4 162593538 162594012 + 0.5 NA Intergenic Intergenic -429741 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 148.833-15 chr12 116638993 116639471 + 0.5 NA Intergenic Intergenic 79851 NM_001085481 643246 Hs.356061 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 116.5-71 chr5 154335822 154336143 + 0.5 NA intron (NM_198321, intron 4 of 11) L1MC1|LINE|L1 -11124 NR_031626 100302181 NR_031626 ENSG00000221430 MIR1294 MIRN1294|hsa-mir-1294|mir-1294 microRNA 1294 ncRNA 188.167-2 chr1 25612423 25613080 + 0.5 NA Intergenic AluSx|SINE|Alu -4717 NM_001289010 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 154.167-60 chr7 131800885 131801382 + 0.5 NA Intergenic Intergenic -109087 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 128.5-67 chr6 72781439 72781913 + 0.5 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 151181 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 151.5-36 chr2 62562708 62563255 + 0.5 NA Intergenic Intergenic -56786 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 147.333-96 chr9 29259914 29260209 + 0.5 NA Intergenic Intergenic -46460 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 188.5-50 chr7 44164965 44165615 + 0.5 NA intron (NM_001354800, intron 1 of 10) AluSx1|SINE|Alu -6008 NM_033508 2645 Hs.1270 NM_000162 ENSG00000106633 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase protein-coding 171.5-34 chr2 104018988 104019523 + 0.5 NA Intergenic Intergenic 389077 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 128.667-71 chr20 53992799 53993125 + 0.5 NA intron (NM_001366298, intron 6 of 12) intron (NM_001366298, intron 6 of 12) 66058 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 123.167-97 chr8 122146095 122146537 + 0.5 NA Intergenic Intergenic 422328 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 140.667-22 chr13 49324906 49325288 + 0.5 NA intron (NM_001079670, intron 10 of 10) intron (NM_001079670, intron 10 of 10) 76445 NM_030925 81617 Hs.87159 NM_030925 ENSG00000102547 CAB39L MO25-BETA|MO2L|bA103J18.3 calcium binding protein 39 like protein-coding 147.5-57 chr3 1788642 1789094 + 0.5 NA Intergenic Intergenic -309935 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 227.5-11 chr15 54651949 54652425 + 0.5 NA Intergenic L1M1|LINE|L1 -404560 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 119.167-54 chr20 54968719 54969062 + 0.5 NA Intergenic MER97c|DNA|hAT-Tip100 -454153 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 121.667-49 chr18 70994198 70994659 + 0.5 NA Intergenic Intergenic -343474 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 183.667-17 chr10 91217773 91218301 + 0.5 NA intron (NM_001257101, intron 1 of 9) AluSq2|SINE|Alu -2114 NM_001256549 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 127.333-3 chr1 75571361 75571808 + 0.5 NA intron (NM_152697, intron 1 of 23) MER47A|DNA|TcMar-Tigger 39530 NM_152697 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 128.167-9 chr11 13350360 13350704 + 0.5 NA intron (NM_001351816, intron 3 of 19) L1M5|LINE|L1 72805 NM_001351819 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 205.833 chr1 68165869 68166665 + 0.5 NA intron (NM_001193334, intron 1 of 10) intron (NM_001193334, intron 1 of 10) 17343 NR_031664 100302279 NR_031664 ENSG00000221203 MIR1262 MIRN1262|hsa-mir-1262|mir-1262 microRNA 1262 ncRNA 128.167-35 chr17 67606050 67606438 + 0.5 NA intron (NM_181671, intron 5 of 9) intron (NM_181671, intron 5 of 9) -111589 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 120.333-105 chr6 149110121 149110460 + 0.5 NA Intergenic MER20B|DNA|hAT-Charlie -77629 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 229-19 chr2 39744256 39744961 + 0.5 NA intron (NM_001321474, intron 7 of 8) intron (NM_001321474, intron 7 of 8) 34650 NM_025264 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 117-35 chr15 93598259 93598746 + 0.5 NA Intergenic L1MEh|LINE|L1 -258058 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 168.333-36 chr3 31443390 31444073 + 0.5 NA Intergenic Intergenic -89194 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 140.333-9 chr10 30085644 30086197 + 0.5 NA intron (NM_001350022, intron 1 of 4) intron (NM_001350022, intron 1 of 4) -26334 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 181.833-3 chr1 171611087 171611582 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -8429 NM_001368164 110806290 NM_001368164 MYOCOS - myocilin opposite strand protein-coding 179.5-3 chr10 105830567 105831325 + 0.5 NA Intergenic Intergenic -10613 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 159.833-38 chr4 175203152 175203715 + 0.5 NA Intergenic Intergenic 285075 NM_001130705 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 123.667-31 chr13 63993403 63993726 + 0.5 NA intron (NR_145420, intron 4 of 5) intron (NR_145420, intron 4 of 5) 82447 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 171.5-35 chr2 110178637 110179095 + 0.5 NA intron (NM_207181, intron 3 of 19) MIRb|SINE|MIR 26147 NM_001128179 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 182.333-63 chr7 43619824 43620270 + 0.5 NA intron (NM_004760, intron 4 of 6) intron (NM_004760, intron 4 of 6) 36939 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 151.5-23 chr14 60338525 60338901 + 0.5 NA Intergenic MIR|SINE|MIR 15517 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 138.167-7 chr10 70157948 70158332 + 0.5 NA intron (NM_020150, intron 4 of 6) MER102c|DNA|hAT-Charlie -11400 NR_073582 219743 Hs.533655 NM_173555 ENSG00000156521 TYSND1 NET41 trypsin domain containing 1 protein-coding 138.167-77 chr9 29062061 29062603 + 0.5 NA intron (NM_001354574, intron 1 of 5) L1MB3|LINE|L1 149967 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 136.333-75 chr5 85628522 85629095 + 0.5 NA Intergenic L1ME1|LINE|L1 -653636 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 139.667-92 chr8 111858042 111858609 + 0.5 NA Intergenic L1MA6|LINE|L1 481686 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 223.667-28 chr7 16765372 16765964 + 0.5 NA intron (NM_014399, intron 1 of 5) intron (NM_014399, intron 1 of 5) 11913 NM_014399 27075 Hs.364544 NM_014399 ENSG00000106537 TSPAN13 NET-6|NET6|TM4SF13 tetraspanin 13 protein-coding 139.5-12 chr11 100644466 100644885 + 0.5 NA Intergenic L2c|LINE|L2 -42613 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 248.5-14 chr5 6984471 6985268 + 0.5 NA Intergenic L2a|LINE|L2 -156948 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 176.5-57 chr5 146541417 146541989 + 0.5 NA Intergenic MIRb|SINE|MIR -25590 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 131.833-48 chr3 127331414 127331840 + 0.5 NA intron (NR_110147, intron 3 of 4) L1MA8|LINE|L1 -43581 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 133-90 chr7 43354505 43354862 + 0.5 NA intron (NM_001287059, intron 4 of 27) L1MA4|LINE|L1 167859 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 143-34 chr2 19935589 19935965 + 0.5 NA intron (NM_001006657, intron 21 of 27) intron (NM_001006657, intron 21 of 27) -33794 NM_001008237 130502 Hs.591547 NM_001008237 ENSG00000183891 TTC32 - tetratricopeptide repeat domain 32 protein-coding 178.167-32 chr3 56828534 56829099 + 0.5 NA intron (NM_001128615, intron 4 of 12) intron (NM_001128615, intron 4 of 12) -26867 NM_019555 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 197-54 chr8 138231032 138231699 + 0.5 NA intron (NM_015912, intron 7 of 19) L2b|LINE|L2 -147820 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 146.333-38 chr17 78671983 78672452 + 0.5 NA Intergenic L1MB7|LINE|L1 -40160 NR_110848 101928710 Hs.464224 NR_110848 ENSG00000267123 SCAT1 LINC02081|XLOC_012582 S-phase cancer associated transcript 1 ncRNA 137.667-96 chr8 129420414 129420877 + 0.5 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 63497 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 197.333-22 chr16 60266302 60267147 + 0.5 NA Intergenic L1MD3|LINE|L1 93069 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 149.167-26 chr16 69842280 69842660 + 0.5 NA intron (NM_001270453, intron 3 of 20) L1PA17|LINE|L1 3733 NM_001270453 11060 Hs.408458 NM_007014 ENSG00000198373 WWP2 AIP2|WWp2-like WW domain containing E3 ubiquitin protein ligase 2 protein-coding 133-95 chr8 90854022 90854531 + 0.5 NA intron (NM_022351, intron 3 of 12) LOR1-int|LTR|ERV1 62501 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 187.833-18 chr15 93497356 93497818 + 0.5 NA Intergenic Intergenic 291521 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 175.167-7 chr1 191907944 191908314 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR -250333 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 206.167-26 chr8 88603165 88603795 + 0.5 NA Intergenic Intergenic -275997 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 140.667-24 chr14 52853726 52854365 + 0.5 NA Intergenic AluSx1|SINE|Alu -62438 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 114.167-10 chr10 122736061 122736415 + 0.5 NA Intergenic Intergenic -20456 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 139.667-6 chr1 115817181 115817533 + 0.5 NA Intergenic Intergenic 23346 NM_001111061 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 143.667-24 chr11 114418975 114419524 + 0.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR 18583 NM_001286048 10179 Hs.7527 NM_016090 ENSG00000076053 RBM7 - RNA binding motif protein 7 protein-coding 188.167-4 chr10 11565225 11565793 + 0.5 NA non-coding (NR_125732, exon 3 of 3) non-coding (NR_125732, exon 3 of 3) -33229 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 148.833-55 chr7 35726652 35727004 + 0.5 NA Intergenic Intergenic 10391 NR_108082 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 146-31 chr18 72016375 72016805 + 0.5 NA Intergenic Intergenic -234364 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 163.667-41 chr2 168205763 168206204 + 0.5 NA intron (NM_013233, intron 1 of 17) intron (NM_013233, intron 1 of 17) 41612 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 157-74 chr7 31800661 31801145 + 0.5 NA intron (NM_001322057, intron 17 of 17) L1M5|LINE|L1 113688 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 113.167-65 chr6 65116073 65116381 + 0.5 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -185191 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 170.167-45 chr5 15220284 15220636 + 0.5 NA intron (NR_109944, intron 2 of 2) intron (NR_109944, intron 2 of 2) 46100 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 138.167-35 chr18 55770798 55771371 + 0.5 NA Intergenic Intergenic 9337 NR_145453 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 162.333-58 chr5 52492570 52493101 + 0.5 NA Intergenic Intergenic -295081 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 153.833-20 chr14 46852291 46852777 + 0.5 NA intron (NM_001113498, intron 15 of 16) L1MEc|LINE|L1 -200753 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 143.333-22 chr15 54263625 54264005 + 0.5 NA intron (NM_001329919, intron 7 of 31) intron (NM_001329919, intron 7 of 31) 251167 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 129.5-75 chr6 43335276 43335575 + 0.5 NA TTS (NM_014345) TTS (NM_014345) -26599 NM_206922 401262 Hs.653165 NM_206922 ENSG00000146215 CRIP3 CRP-3|TLP|TLP-A|h6LIMo cysteine rich protein 3 protein-coding 128.667-53 chr17 60753790 60754210 + 0.5 NA intron (NM_001330413, intron 6 of 25) intron (NM_001330413, intron 6 of 25) 76149 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 154.167-55 chr5 90725928 90726438 + 0.5 NA intron (NR_003149, intron 48 of 89) L2a|LINE|L2 167386 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 117-95 chr6 7935855 7936394 + 0.5 NA intron (NR_037616, intron 4 of 12) intron (NR_037616, intron 4 of 12) -25336 NM_030810 81567 Hs.150837 NM_022085 ENSG00000239264 TXNDC5 ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364 thioredoxin domain containing 5 protein-coding 121-20 chr12 32572818 32573269 + 0.5 NA intron (NM_001370297, intron 2 of 14) intron (NM_001370297, intron 2 of 14) 38750 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 170.167-19 chr14 65656350 65656916 + 0.5 NA intron (NM_004480, intron 5 of 9) L1MA3|LINE|L1 185531 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 184.833-12 chr2 64084060 64084706 + 0.5 NA Intergenic MamSINE1|SINE|tRNA-RTE 60037 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 170.5-63 chr7 13213056 13213860 + 0.5 NA Intergenic Intergenic 525825 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 144.167-24 chr15 42336878 42337380 + 0.5 NA intron (NM_198141, intron 15 of 23) L1PREC2|LINE|L1 -22371 NM_024344 825 Hs.143261 NM_000070 ENSG00000092529 CAPN3 CANP3|CANPL3|LGMD2|LGMD2A|LGMDD4|LGMDR1|nCL-1|p94 calpain 3 protein-coding 126-15 chr10 99543233 99543600 + 0.5 NA Intergenic AluSz|SINE|Alu 10474 NM_145285 159296 Hs.243272 NM_145285 ENSG00000119919 NKX2-3 CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3 NK2 homeobox 3 protein-coding 133.667-105 chr9 136036136 136036592 + 0.5 NA intron (NM_144653, intron 2 of 5) L1MEf|LINE|L1 58925 NM_144653 138151 Hs.112895 NM_144653 ENSG00000148411 NACC2 BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB NACC family member 2 protein-coding 148-57 chr4 35355397 35355856 + 0.5 NA Intergenic Intergenic 888313 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 157.333 chr1 42323090 42323591 + 0.5 NA intron (NM_001198851, intron 2 of 14) intron (NM_001198851, intron 2 of 14) 11615 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 131.167-54 chr3 121423443 121423997 + 0.5 NA non-coding (NR_145516, exon 29 of 29) non-coding (NR_145516, exon 29 of 29) 122268 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 130.333-5 chr1 109186547 109186913 + 0.5 NA 5' UTR (NM_001284353, exon 1 of 15) 5' UTR (NM_001284353, exon 1 of 15) 181 NM_001284353 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 135.667-72 chr3 100834743 100835213 + 0.5 NA intron (NM_001349330, intron 23 of 61) intron (NM_001349330, intron 23 of 61) 125436 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 145.667-81 chr5 29474483 29474880 + 0.5 NA Intergenic MIR|SINE|MIR -78705 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 128.833-81 chr6 145327598 145328038 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 359059 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 114-74 chr4 101190074 101190524 + 0.5 NA intron (NM_001130691, intron 2 of 12) intron (NM_001130691, intron 2 of 12) 50573 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 147.5-88 chr9 31701314 31701651 + 0.5 NA Intergenic LTR53B|LTR|ERVL -319992 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 123-60 chr22 32489389 32489769 + 0.5 NA intron (NM_001257990, intron 5 of 8) MIRb|SINE|MIR 14342 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 161.833-24 chr2 236551853 236552176 + 0.5 NA Intergenic Intergenic -17811 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 184.5-22 chr19 52577027 52577506 + 0.5 NA intron (NM_018260, intron 3 of 3) AluSz|SINE|Alu 6602 NM_001172655 55762 Hs.235167 NM_018260 ENSG00000167562 ZNF701 - zinc finger protein 701 protein-coding 129.167-75 chr7 31615278 31615643 + 0.5 NA intron (NM_194300, intron 8 of 12) intron (NM_194300, intron 8 of 12) 62458 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 126-58 chr22 33104542 33104901 + 0.5 NA Intergenic Intergenic -3808 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 189.667-36 chr4 33288057 33288514 + 0.5 NA Intergenic L1M5|LINE|L1 751608 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 116.333-59 chr3 24392288 24392607 + 0.5 NA intron (NM_001354709, intron 1 of 10) L1MA4|LINE|L1 -101640 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 126.167-3 chr1 70279916 70280458 + 0.5 NA intron (NM_030816, intron 9 of 12) intron (NM_030816, intron 9 of 12) 58807 NM_001350616 9295 Hs.479693 NM_004768 ENSG00000116754 SRSF11 NET2|SFRS11|dJ677H15.2|p54 serine and arginine rich splicing factor 11 protein-coding 261.5-13 chr2 127878163 127878900 + 0.5 NA intron (NM_001199140, intron 2 of 7) intron (NM_001199140, intron 2 of 7) 6329 NM_031445 83607 Hs.546449 NM_031445 ENSG00000144233 AMMECR1L - AMMECR1 like protein-coding 117.5-39 chr3 88310139 88310459 + 0.5 NA Intergenic Intergenic -28157 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 131.667-53 chr2 36072308 36072777 + 0.5 NA Intergenic UCON71_Crp|Unknown|Unknown 283028 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 127-54 chr2 182585541 182585940 + 0.5 NA Intergenic Intergenic -62895 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 145.5-15 chr12 120405532 120406090 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -32302 NM_004373 1337 Hs.369624 NM_004373 ENSG00000111775 COX6A1 CMTRID|COX6A|COX6AL cytochrome c oxidase subunit 6A1 protein-coding 188.5-12 chr11 114803713 114804245 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 125452 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 118.333-38 chr15 59153178 59153499 + 0.5 NA intron (NM_004998, intron 26 of 27) intron (NM_004998, intron 26 of 27) 17924 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 113.5-3 chr1 105164342 105164810 + 0.5 NA Intergenic Intergenic 454359 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 142.667-103 chrX 72411895 72412251 + 0.5 NA intron (NR_051952, intron 8 of 9) intron (NR_051952, intron 8 of 9) -104916 NM_001144886 4435 Hs.40403 NM_004143 ENSG00000125931 CITED1 MSG1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 protein-coding 188.167-8 chr12 16214409 16214824 + 0.5 NA intron (NM_001170798, intron 7 of 8) MER77B|LTR|ERVL 63069 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 241.5 chr1 99724119 99724871 + 0.5 NA intron (NM_001013660, intron 9 of 16) intron (NM_001013660, intron 9 of 16) -11542 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 124.833-47 chr2 165119757 165120048 + 0.5 NA intron (NM_006922, intron 18 of 27) intron (NM_006922, intron 18 of 27) 84148 NM_006922 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 132.333-81 chr5 8793902 8794412 + 0.5 NA Intergenic Intergenic -45575 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 143.333-79 chr6 163381606 163382023 + 0.5 NA Intergenic Intergenic 32136 NR_037593 100526820 Hs.644159 NR_037593 ENSG00000270419 CAHM LINC00468 colon adenocarcinoma hypermethylated ncRNA 124.167-37 chr18 11357428 11357789 + 0.5 NA Intergenic L1MA9|LINE|L1 -96870 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 127.167-38 chr15 101421938 101422504 + 0.5 NA intron (NM_138325, intron 6 of 13) L1MEf|LINE|L1 67486 NM_138322 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 129.167-7 chr10 31543089 31543603 + 0.5 NA Intergenic MER21B|LTR|ERVL -143591 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 140-45 chr21 18613946 18614295 + 0.5 NA intron (NR_109925, intron 2 of 3) MIRb|SINE|MIR 72044 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 122.5-23 chr12 64952798 64953140 + 0.5 NA intron (NR_146276, intron 3 of 3) L2a|LINE|L2 39322 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 171.167-8 chr10 33403700 33404250 + 0.5 NA Intergenic L3b|LINE|CR1 -69070 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 178.5-9 chr10 59257962 59258452 + 0.5 NA intron (NM_001347845, intron 9 of 12) AluJr|SINE|Alu 80740 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 187.667-7 chr11 10304467 10304877 + 0.5 NA promoter-TSS (NM_001124) promoter-TSS (NM_001124) -401 NM_001124 133 Hs.441047 NM_001124 ENSG00000148926 ADM AM|PAMP adrenomedullin protein-coding 116.167-19 chr11 14463837 14464275 + 0.5 NA intron (NM_016451, intron 18 of 21) L2b|LINE|L2 35802 NM_016451 1315 Hs.339278 NM_016451 ENSG00000129083 COPB1 COPB coatomer protein complex subunit beta 1 protein-coding 208-30 chr4 56197549 56198258 + 0.5 NA intron (NM_020722, intron 2 of 10) AluY|SINE|Alu 27708 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 192.5-15 chr15 67491222 67491878 + 0.5 NA intron (NM_001031715, intron 19 of 20) intron (NM_001031715, intron 19 of 20) 29423 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 151-28 chr16 6553645 6553992 + 0.5 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -219991 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 126.833-41 chr21 44006355 44006736 + 0.5 NA Intergenic Intergenic -5764 NM_003274 7109 Hs.126221 NM_003274 ENSG00000160218 TRAPPC10 EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30 trafficking protein particle complex 10 protein-coding 125-24 chr12 93556597 93557018 + 0.5 NA Intergenic L1ME1|LINE|L1 -13162 NM_003877 8835 Hs.485572 NM_003877 ENSG00000120833 SOCS2 CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2 suppressor of cytokine signaling 2 protein-coding 206.333-5 chr11 98828342 98829058 + 0.5 NA Intergenic AluSc|SINE|Alu -192249 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 158.5-56 chr3 164530737 164531145 + 0.5 NA Intergenic L1MEd|LINE|L1 300539 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 117.5-15 chr13 47497517 47497797 + 0.5 NA Intergenic Intergenic 434965 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 148-89 chrX 140468781 140469264 + 0.5 NA Intergenic AluSx1|SINE|Alu 36038 NM_005634 6658 Hs.157429 NM_005634 ENSG00000134595 SOX3 GHDX|MRGH|PHP|PHPX|SOXB SRY-box transcription factor 3 protein-coding 204.667 chr1 69914154 69914689 + 0.5 NA intron (NM_001370785, intron 7 of 26) intron (NM_001370785, intron 7 of 26) -4901 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 124.833-91 chr9 121510977 121511434 + 0.5 NA Intergenic Intergenic -11178 NR_003191 2681 Hs.97469 NR_003191 ENSG00000204136 GGTA1P GGTA|GGTA1|GLYT2|a1/3GTP glycoprotein alpha-galactosyltransferase 1, pseudogene pseudo 160.167-5 chr10 46025437 46026200 + 0.5 NA intron (NM_001145263, intron 1 of 9) L2c|LINE|L2 -2360 NM_005437 8031 Hs.643658 NM_005437 ENSG00000266412 NCOA4 ARA70|ELE1|PTC3|RFG nuclear receptor coactivator 4 protein-coding 118.833-57 chr3 185176391 185176885 + 0.5 NA intron (NR_038990, intron 1 of 6) intron (NR_038990, intron 1 of 6) 13737 NR_038990 339926 Hs.567848 NR_038990 ENSG00000223358 EHHADH-AS1 - EHHADH antisense RNA 1 ncRNA 158.833-41 chr3 122512377 122512860 + 0.5 NA intron (NR_026698, intron 1 of 14) AluSx3|SINE|Alu 2321 NM_002264 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 139.667-49 chr2 29955157 29955487 + 0.5 NA Intergenic Intergenic -33736 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 114.5-46 chr2 31421826 31422214 + 0.5 NA Intergenic L2b|LINE|L2 -7278 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 177.167-4 chr11 22512414 22512878 + 0.5 NA Intergenic Intergenic -20627 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 129.667-76 chr4 48191371 48191757 + 0.5 NA intron (NM_003215, intron 2 of 17) intron (NM_003215, intron 2 of 17) -57314 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 166.667-8 chr10 93682049 93682698 + 0.5 NA intron (NM_145246, intron 10 of 13) intron (NM_145246, intron 10 of 13) 20199 NR_144635 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 157-22 chr14 28682541 28682974 + 0.5 NA Intergenic L1PA15|LINE|L1 82562 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 124.333-69 chr4 46033760 46034075 + 0.5 NA Intergenic Intergenic 90137 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 122.5-41 chr17 59766766 59767316 + 0.5 NA intron (NM_001329400, intron 4 of 9) intron (NM_001329400, intron 4 of 9) 59387 NM_001329394 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 151.333-14 chr11 11436887 11437283 + 0.5 NA intron (NM_001363464, intron 2 of 9) (CTGCCCT)n|Simple_repeat|Simple_repeat -83835 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 127.333-44 chr17 70580638 70580994 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR 411281 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 231.667-10 chr13 92450922 92451753 + 0.5 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -38826 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 134.167-3 chr1 172781803 172782320 + 0.5 NA Intergenic L1MA2|LINE|L1 122958 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 174-11 chr11 75575560 75576124 + 0.5 NA Intergenic MIR|SINE|MIR -7354 NR_145823 105369391 Hs.689687 NR_145823 ENSG00000255326 LOC105369391 - uncharacterized LOC105369391 ncRNA 125.167-23 chr14 46137996 46138318 + 0.5 NA intron (NR_102702, intron 1 of 3) Tigger17a|DNA|TcMar-Tigger 73998 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 151.833-3 chr1 199108260 199108659 + 0.5 NA Intergenic L1MB1|LINE|L1 -40139 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 179-9 chr13 30984431 30985059 + 0.5 NA Intergenic L1ME1|LINE|L1 52089 NR_148425 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 127.167-88 chr8 68555891 68556233 + 0.5 NA intron (NR_146186, intron 7 of 12) intron (NR_146186, intron 7 of 12) -224571 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 121-15 chr11 38312506 38312804 + 0.5 NA Intergenic Intergenic 333701 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 146.667-60 chr22 25444647 25445146 + 0.5 NA Intergenic AluSq|SINE|Alu -3191 NR_033734 1416 Hs.571835 NR_033733 ENSG00000100058 CRYBB2P1 CRYB2B crystallin beta B2 pseudogene 1 pseudo 113.5-36 chr14 68332700 68332974 + 0.5 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 295950 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 186.167-23 chr2 142127134 142127633 + 0.5 NA intron (NM_018557, intron 1 of 90) (ATCC)n|Simple_repeat|Simple_repeat 4318 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 115-61 chr5 10251566 10251863 + 0.5 NA intron (NM_001306156, intron 1 of 10) intron (NM_001306156, intron 1 of 10) 1177 NM_001306155 22948 Hs.1600 NM_012073 ENSG00000150753 CCT5 CCT-epsilon|CCTE|HEL-S-69|PNAS-102|TCP-1-epsilon chaperonin containing TCP1 subunit 5 protein-coding 141.333-68 chr4 53771682 53772006 + 0.5 NA Intergenic Intergenic 75943 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 169-25 chr2 80299566 80300036 + 0.5 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 4951 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 148.833-56 chr7 85120981 85121311 + 0.5 NA intron (NM_152754, intron 1 of 16) intron (NM_152754, intron 1 of 16) 785 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 113.333-5 chr1 62555160 62555523 + 0.5 NA intron (NM_001367561, intron 21 of 49) intron (NM_001367561, intron 21 of 49) -42179 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 134.167-46 chr2 105920379 105920868 + 0.5 NA Intergenic Intergenic 68776 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 150.167-65 chr8 46890993 46891391 + 0.5 NA Intergenic BSR/Beta|Satellite|Satellite 50306 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 165-26 chr2 131053347 131053711 + 0.5 NA intron (NM_001321746, intron 5 of 6) L1MB3|LINE|L1 39633 NM_001321748 130074 Hs.534679 NM_001009993 ENSG00000152102 FAM168B MANI family with sequence similarity 168 member B protein-coding 128.167-68 chr5 101817751 101818065 + 0.5 NA Intergenic LTR52|LTR|ERVL 478376 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 227-11 chr18 42097048 42097717 + 0.5 NA Intergenic L1MB8|LINE|L1 -89286 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 133.167-64 chr7 100346437 100346836 + 0.5 NA intron (NR_036569, intron 4 of 17) intron (NR_036569, intron 4 of 17) -5682 NR_103728 101752334 Hs.521075 NR_103728 PVRIG2P - poliovirus receptor related immunoglobulin domain containing 2, pseudogene pseudo 138.333-99 chr7 53071469 53071848 + 0.5 NA Intergenic (TTCT)n|Simple_repeat|Simple_repeat 36025 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 139-78 chr8 75335560 75336135 + 0.5 NA Intergenic Intergenic -56958 NR_103849 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 195.667-35 chr5 132860138 132860601 + 0.5 NA TTS (NM_001288826) TTS (NM_001288826) 4992 NM_005260 2661 Hs.25022 NM_005260 ENSG00000164404 GDF9 POF14 growth differentiation factor 9 protein-coding 122-71 chr5 134929455 134929912 + 0.5 NA intron (NM_032151, intron 2 of 3) intron (NM_032151, intron 2 of 3) 24563 NM_032151 84105 Hs.710014 NM_032151 ENSG00000132570 PCBD2 DCOH2|DCOHM|PHS2 pterin-4 alpha-carbinolamine dehydratase 2 protein-coding 143.167-48 chr3 114335680 114336318 + 0.5 NA non-coding (NR_121662, exon 7 of 7) non-coding (NR_121662, exon 7 of 7) -15812 NR_038993 100131117 Hs.122417 NR_038993 ENSG00000241560 ZBTB20-AS1 - ZBTB20 antisense RNA 1 ncRNA 179.333-23 chr17 80975004 80975475 + 0.5 NA Intergenic AluJo|SINE|Alu -4026 NR_148968 400627 Hs.591201 NR_148968 ENSG00000261924 LOC400627 - uncharacterized LOC400627 ncRNA 163.167-25 chr2 235934765 235935217 + 0.5 NA intron (NM_001037131, intron 12 of 17) intron (NM_001037131, intron 12 of 17) 233395 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 128.333-20 chr10 126008505 126009016 + 0.5 NA intron (NM_001363549, intron 8 of 10) intron (NM_001363549, intron 8 of 10) -35487 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 194.833-11 chr2 183578718 183579206 + 0.5 NA Intergenic Intergenic 454519 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 128.833-34 chr17 51043561 51043957 + 0.5 NA intron (NM_001130527, intron 4 of 29) intron (NM_001130527, intron 4 of 29) 3119 NM_001251971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 130.5-29 chr16 62148273 62148554 + 0.5 NA Intergenic MIR|SINE|MIR -111975 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 158.5-52 chr3 77468123 77468559 + 0.5 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 370329 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 140-48 chr3 33230214 33230590 + 0.5 NA Intergenic LTR85a|LTR|Gypsy? -11592 NM_015551 26032 Hs.196647 NM_015551 ENSG00000173705 SUSD5 - sushi domain containing 5 protein-coding 149.667-40 chr2 68690515 68690976 + 0.5 NA Intergenic Intergenic -44066 NM_001364819 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 137.5-66 chr4 34468105 34468457 + 0.5 NA Intergenic Intergenic -198534 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 184.333-66 chr8 102255449 102256012 + 0.5 NA intron (NM_001282873, intron 58 of 58) intron (NM_001282873, intron 58 of 58) 16279 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 135.833-27 chr18 13436354 13436823 + 0.5 NA intron (NM_181482, intron 3 of 5) intron (NM_181482, intron 3 of 5) -9054 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 117.167-12 chr11 68090964 68091276 + 0.5 NA intron (NM_001277, intron 2 of 11) intron (NM_001277, intron 2 of 11) 30268 NM_001277 1119 Hs.77221 NM_001277 ENSG00000110721 CHKA CHK|CK|CKI|EK choline kinase alpha protein-coding 123.167-95 chr8 85501070 85501341 + 0.5 NA Intergenic Intergenic -36290 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 119.667-94 chr8 34675589 34675964 + 0.5 NA Intergenic Intergenic -108145 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 183.333-48 chr5 120594040 120594524 + 0.5 NA intron (NM_001308088, intron 1 of 3) L1PREC2|LINE|L1 62818 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 116.167-50 chr3 128282471 128283029 + 0.5 NA intron (NM_021937, intron 4 of 6) intron (NM_021937, intron 4 of 6) -128836 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 119.667-79 chr5 64993436 64993983 + 0.5 NA intron (NM_005869, intron 13 of 13) intron (NM_005869, intron 13 of 13) 224779 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 226.167-27 chr8 5883594 5884141 + 0.5 NA Intergenic L1PA5|LINE|L1 522681 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 172.5-66 chrX 97534713 97535191 + 0.5 NA intron (NR_125391, intron 1 of 2) L1MC3|LINE|L1 29583 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 202-36 chr5 109120109 109120819 + 0.5 NA intron (NR_146155, intron 17 of 19) L1M1|LINE|L1 195858 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 136.5-45 chr19 55865911 55866324 + 0.5 NA intron (NM_134444, intron 5 of 9) AluSc|SINE|Alu -29355 NM_145007 204801 Hs.375039 NM_145007 ENSG00000179873 NLRP11 CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7 NLR family pyrin domain containing 11 protein-coding 170-51 chr3 97668995 97669629 + 0.5 NA intron (NM_001080448, intron 14 of 17) intron (NM_001080448, intron 14 of 17) -95209 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 133.667-14 chr10 72107607 72108035 + 0.5 NA intron (NM_001369103, intron 8 of 9) LTR24C|LTR|ERV1 -18789 NM_001134434 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 222.833-5 chr15 33438921 33439555 + 0.5 NA intron (NM_001243996, intron 1 of 102) L1ME3G|LINE|L1 128271 NM_001036 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 143.167-56 chr4 58143793 58144355 + 0.5 NA Intergenic Intergenic 392254 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 205.833-14 chr18 52903481 52904117 + 0.5 NA intron (NM_005215, intron 2 of 28) intron (NM_005215, intron 2 of 28) -333302 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 134.333-54 chr2 41764448 41764895 + 0.5 NA Intergenic L2-3_Crp|LINE|L2 -112884 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 164.5-28 chr2 9293987 9294446 + 0.5 NA intron (NM_003887, intron 2 of 27) AluSx|SINE|Alu 87404 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 132.667-45 chr2 17252425 17252997 + 0.5 NA Intergenic AluSq2|SINE|Alu 265729 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 160.833-39 chr5 142834189 142834858 + 0.5 NA intron (NM_001349547, intron 1 of 21) MLT1H|LTR|ERVL-MaLR 34387 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 130.333-87 chr7 52534773 52535068 + 0.5 NA Intergenic Intergenic -500713 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 116.333-77 chr5 17721726 17722112 + 0.5 NA Intergenic Intergenic -66281 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 136.833-22 chr14 61675154 61675678 + 0.5 NA Intergenic LTR16|LTR|ERVL -20097 NM_001530 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 149.333-62 chr22 43856761 43857141 + 0.5 NA intron (NM_014351, intron 1 of 6) L1MCc|LINE|L1 5562 NM_014351 25830 Hs.189810 NM_014351 ENSG00000130540 SULT4A1 BR-STL-1|BRSTL1|DJ388M5.3|NST|SULTX3|hBR-STL-1 sulfotransferase family 4A member 1 protein-coding 151.667-60 chr4 44576496 44577025 + 0.5 NA Intergenic AluSq4|SINE|Alu 74881 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 194-4 chr10 35907949 35908506 + 0.5 NA Intergenic Intergenic 129925 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 136.5-59 chr20 11284423 11284784 + 0.5 NA Intergenic Intergenic -11220 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 124.333-104 chr8 122690711 122690983 + 0.5 NA intron (NR_126348, intron 2 of 3) intron (NR_126348, intron 2 of 3) 3259 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 123-72 chr5 9563131 9563438 + 0.5 NA Intergenic Intergenic 14457 NR_003689 100113384 NR_003689 SNORD123 - small nucleolar RNA, C/D box 123 snoRNA 140-15 chr11 115054456 115054978 + 0.5 NA Intergenic Intergenic -278860 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 133.333-123 chr8 127459971 127460415 + 0.5 NA intron (NR_024393, intron 4 of 4) intron (NR_024393, intron 4 of 4) 21946 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 185.333-43 chr3 187633267 187633751 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR 36885 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 154.833-11 chr10 83513450 83513916 + 0.5 NA Intergenic Tigger4|DNA|TcMar-Tigger 163406 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 149-59 chr4 24710809 24711164 + 0.5 NA Intergenic L1MD2|LINE|L1 -84587 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3 protein-coding 123.5-61 chr5 22034002 22034414 + 0.5 NA intron (NM_004061, intron 5 of 14) AluSz6|SINE|Alu -108144 NR_003921 5369 Hs.247975 NM_031887 ENSG00000168967 PMCHL1 - pro-melanin concentrating hormone like 1 (pseudogene) pseudo 133.667-57 chr20 46550482 46550861 + 0.5 NA promoter-TSS (NM_080721) promoter-TSS (NM_080721) -17 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 117-42 chr17 61771609 61772158 + 0.5 NA intron (NM_032043, intron 14 of 19) AluSx1|SINE|Alu 91676 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 156.167-64 chr9 70699732 70700182 + 0.5 NA intron (NM_001366143, intron 8 of 25) intron (NM_001366143, intron 8 of 25) 110127 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 147-41 chr2 164487058 164487514 + 0.5 NA Intergenic L2c|LINE|L2 81209 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 122.167-21 chr14 54666914 54667347 + 0.5 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) -87703 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 222.5-14 chr20 45698115 45699048 + 0.5 NA intron (NM_172006, intron 2 of 3) L1MB5|LINE|L1 -3457 NM_172005 164237 Hs.406733 NM_172005 ENSG00000168634 WFDC13 C20orf138|WAP13|dJ601O1.3 WAP four-disulfide core domain 13 protein-coding 145.167-20 chr12 61460084 61460479 + 0.5 NA Intergenic Intergenic 732558 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 168.5-46 chr5 5760019 5760489 + 0.5 NA Intergenic Intergenic 337577 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 119.333-7 chr1 191459271 191459638 + 0.5 NA Intergenic Intergenic -230956 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 117-116 chr7 127802568 127802944 + 0.5 NA intron (NM_014390, intron 10 of 23) L2a|LINE|L2 150562 NM_014390 27044 Hs.122523 NM_014390 ENSG00000197157 SND1 TDRD11|Tudor-SN|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 124.667-105 chr5 164167339 164167767 + 0.5 NA Intergenic Intergenic 299849 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 150.5-55 chr4 82653350 82653796 + 0.5 NA intron (NM_001037582, intron 3 of 4) intron (NM_001037582, intron 3 of 4) -32136 NR_024088 439934 Hs.457189 NM_001033661 ENSG00000231782 LINC00575 C4orf11 long intergenic non-protein coding RNA 575 ncRNA 159.667-25 chr12 56049380 56049961 + 0.5 NA Intergenic AluSg7|SINE|Alu 7752 NM_001029 6231 Hs.447562 NM_001029 ENSG00000197728 RPS26 DBA10|S26|eS26 ribosomal protein S26 protein-coding 116.167-32 chr19 37421284 37421679 + 0.5 NA intron (NM_001330482, intron 4 of 4) Tigger1|DNA|TcMar-Tigger 45963 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 113.167-7 chr10 22344116 22344583 + 0.5 NA Intergenic Intergenic -1096 NM_001253855 9576 Hs.655170 NM_012443 ENSG00000077327 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 115-72 chr6 51242664 51242936 + 0.5 NA Intergenic L1PB1|LINE|L1 -379070 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 142.833-60 chr5 98949194 98949511 + 0.5 NA intron (NR_151718, intron 1 of 3) ERV3-16A3_LTR|LTR|ERVL -19638 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 152.5-54 chr5 120456256 120456700 + 0.5 NA Intergenic Intergenic -7800 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 138.333-5 chr1 71910690 71911032 + 0.5 NA intron (NM_173808, intron 2 of 6) AluJb|SINE|Alu -73849 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 122.333-19 chr11 75916259 75916649 + 0.5 NA intron (NM_003369, intron 6 of 14) intron (NM_003369, intron 6 of 14) 101244 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 113.667-28 chr11 98197360 98197615 + 0.5 NA Intergenic Intergenic -823462 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 157.333-47 chr3 4704737 4705215 + 0.5 NA intron (NM_001168272, intron 35 of 60) intron (NM_001168272, intron 35 of 60) 46614 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 130-102 chr9 27389147 27389667 + 0.5 NA intron (NM_024761, intron 2 of 3) L2a|LINE|L2 -92257 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 161-22 chr17 47599003 47599510 + 0.5 NA intron (NM_001330257, intron 14 of 23) intron (NM_001330257, intron 14 of 23) -50663 NM_002265 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 189.833-17 chr2 116550874 116551519 + 0.5 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 1207381 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 152.833-40 chr21 35077359 35077732 + 0.5 NA Intergenic Intergenic -28247 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 114.5-19 chr11 115466633 115467143 + 0.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 37527 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 182.167-38 chr8 100993813 100994361 + 0.5 NA Intergenic MIR3|SINE|MIR -40705 NM_003406 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 121.5-118 chr9 103880116 103880516 + 0.5 NA Intergenic Intergenic -119393 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 165.333-66 chr7 93615171 93615750 + 0.5 NA Intergenic MIRc|SINE|MIR -40730 NM_001164737 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 187.167-39 chr7 88577824 88578332 + 0.5 NA Intergenic Intergenic -181622 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 169.833-11 chr11 81650118 81650647 + 0.5 NA Intergenic L1MC4|LINE|L1 240454 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 124.667-16 chr10 101449250 101449592 + 0.5 NA intron (NM_001256856, intron 2 of 13) intron (NM_001256856, intron 2 of 13) 95256 NM_033637 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 117.667-51 chr17 52398779 52399243 + 0.5 NA intron (NR_146898, intron 1 of 3) intron (NR_146898, intron 1 of 3) 8489 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 116.667-79 chr3 164041297 164041625 + 0.5 NA Intergenic Intergenic 130095 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 208.5-46 chr8 41216696 41217194 + 0.5 NA Intergenic AluJr|SINE|Alu 54198 NR_049801 100847068 NR_049801 ENSG00000263372 MIR548AO - microRNA 548ao ncRNA 138.833-70 chr5 94727331 94727783 + 0.5 NA intron (NM_001297777, intron 16 of 19) intron (NM_001297777, intron 16 of 19) 108888 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 193.833-30 chr5 159358489 159359120 + 0.5 NA intron (NR_037889, intron 4 of 4) MLT1K|LTR|ERVL-MaLR 27286 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 153.833-66 chr8 126466637 126467056 + 0.5 NA Intergenic Intergenic 91632 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 114.333-22 chr11 96162591 96163008 + 0.5 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -178639 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 115.667-43 chr19 12662300 12662735 + 0.5 NA intron (NM_001173498, intron 6 of 23) AluSg4|SINE|Alu 4225 NM_000528 4125 Hs.356769 NM_000528 ENSG00000104774 MAN2B1 LAMAN|MANB mannosidase alpha class 2B member 1 protein-coding 133.667-67 chr4 113306320 113306855 + 0.5 NA intron (NM_001354275, intron 24 of 43) intron (NM_001354275, intron 24 of 43) 13748 NM_001354280 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 128.5-79 chr8 33404468 33404806 + 0.5 NA intron (NM_032664, intron 3 of 4) MLT1L|LTR|ERVL-MaLR 68509 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 198-19 chr14 89133461 89133979 + 0.5 NA Intergenic Intergenic 283513 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 134.667-30 chr14 71383952 71384276 + 0.5 NA intron (NM_001354285, intron 2 of 24) L2c|LINE|L2 -14223 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 131.667-38 chr14 87340442 87340831 + 0.5 NA Intergenic Intergenic 314658 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 120.667-8 chr1 117902704 117903086 + 0.5 NA intron (NM_001135589, intron 6 of 12) L1MB7|LINE|L1 26726 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 130.5-45 chr2 84777942 84778385 + 0.5 NA intron (NM_001370, intron 64 of 76) intron (NM_001370, intron 64 of 76) 102921 NM_001307978 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 166.167-14 chr14 80837476 80837942 + 0.5 NA intron (NM_152446, intron 11 of 24) AluSc|SINE|Alu 104029 NR_157142 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 118.167-21 chr15 47625004 47625435 + 0.5 NA intron (NM_001198999, intron 4 of 19) intron (NM_001198999, intron 4 of 19) -92286 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 119.833-56 chr3 2243005 2243456 + 0.5 NA intron (NM_001206955, intron 1 of 23) L2c|LINE|L2 4401 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 127.167-21 chr11 79385421 79385786 + 0.5 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 16506 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 214.333-13 chr12 88913472 88914221 + 0.5 NA Intergenic L1MA4A|LINE|L1 105846 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 151.167-42 chr5 99978497 99978996 + 0.5 NA Intergenic MLT1F|LTR|ERVL-MaLR 409508 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 120.667-97 chr6 47758247 47758534 + 0.5 NA Intergenic Intergenic -23649 NM_181744 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 124.833 chr1 55798608 55798939 + 0.5 NA Intergenic L1MB3|LINE|L1 146190 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 160-17 chr11 78076123 78076665 + 0.5 NA intron (NM_001204054, intron 1 of 2) AluSx|SINE|Alu 3468 NM_001204054 4718 Hs.407860 NM_004549 ENSG00000151366 NDUFC2 B14.5b|CI-B14.5b|HLC-1|NADHDH2 NADH:ubiquinone oxidoreductase subunit C2 protein-coding 117.333-34 chr14 65401235 65401663 + 0.5 NA Intergenic MLT1M|LTR|ERVL-MaLR -9143 NM_004480 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 129-108 chrX 137336147 137336476 + 0.5 NA Intergenic MIRc|SINE|MIR -229816 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 131.333-29 chr14 53815928 53816379 + 0.5 NA Intergenic L1PA7|LINE|L1 132331 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 118.833-47 chr20 37846906 37847373 + 0.5 NA intron (NM_001281495, intron 14 of 16) intron (NM_001281495, intron 14 of 16) -55988 NM_080607 128434 Hs.517029 NM_080607 ENSG00000132821 VSTM2L C20orf102|dJ1118M15.2 V-set and transmembrane domain containing 2 like protein-coding 168.833 chr1 52678413 52679155 + 0.5 NA Intergenic Intergenic 19563 NM_023077 65260 Hs.349905 NM_023077 ENSG00000162377 COA7 C1orf163|RESA1|SCAN3|SELRC1 cytochrome c oxidase assembly factor 7 (putative) protein-coding 195.5-44 chrX 105007946 105008478 + 0.5 NA intron (NM_017416, intron 2 of 10) MSTD|LTR|ERVL-MaLR 212481 NM_031274 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 131-34 chr20 40294221 40294564 + 0.5 NA Intergenic Intergenic 289931 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 157.833-6 chr1 244437070 244437490 + 0.5 NA intron (NM_001365073, intron 2 of 12) MER112|DNA|hAT-Charlie 14629 NM_001126 159 Hs.498313 NM_001126 ENSG00000035687 ADSS ADEH|ADSS 2|ADSS2 adenylosuccinate synthase protein-coding 114.5-69 chr4 59539372 59539668 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 525947 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 133.667-60 chr3 13841831 13842354 + 0.5 NA intron (NM_004625, intron 3 of 3) L2a|LINE|L2 37979 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 118.5-61 chr21 24934511 24934933 + 0.5 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 94172 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 173.667-4 chr1 208955146 208955692 + 0.5 NA Intergenic Intergenic -17035 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 208.167-11 chr2 38001728 38002285 + 0.5 NA intron (NM_001170793, intron 7 of 9) intron (NM_001170793, intron 7 of 9) 34335 NR_102712 101410544 Hs.591566 NR_102712 RMDN2-AS1 - RMDN2 antisense RNA 1 ncRNA 149.5-46 chr3 74473733 74474177 + 0.5 NA intron (NM_020872, intron 3 of 21) L2a|LINE|L2 47185 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 157.667 chr1 14334935 14335341 + 0.5 NA Intergenic MSTB|LTR|ERVL-MaLR 84835 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 164.333-82 chr8 78662816 78663277 + 0.5 NA Intergenic Intergenic -3043 NM_016010 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 114.333-20 chr11 56606505 56606845 + 0.5 NA Intergenic HERVL-int|LTR|ERVL 6827 NM_001004740 390168 Hs.553751 NM_001004740 ENSG00000255012 OR5M1 OR11-208|OST050 olfactory receptor family 5 subfamily M member 1 protein-coding 171.833-32 chr3 111782374 111783045 + 0.5 NA intron (NM_001185106, intron 4 of 4) L2b|LINE|L2 50213 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 152.667-85 chr8 116927902 116928263 + 0.5 NA Intergenic MER57B2|LTR|ERV1 -10125 NM_001025357 441376 Hs.437551 NM_001025357 ENSG00000205002 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 179.833-37 chr9 102788126 102788621 + 0.5 NA Intergenic Intergenic -206960 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 119.334-6 chr8 75232222 75232817 + 0.5 NA intron (NR_103849, intron 1 of 1) L1MC1|LINE|L1 45962 NR_103850 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 124.167-87 chr8 47106429 47106947 + 0.5 NA Intergenic L1M5|LINE|L1 -82619 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 144.167-64 chr5 144092043 144092570 + 0.5 NA Intergenic MIR|SINE|MIR 78353 NM_030799 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 129.833-63 chr7 3052483 3052907 + 0.5 NA Intergenic HSMAR2|DNA|TcMar-Mariner -8828 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 118.167-37 chr2 210210599 210211049 + 0.5 NA intron (NM_001608, intron 4 of 10) AluJo|SINE|Alu 14623 NM_001608 33 Hs.471277 NM_001608 ENSG00000115361 ACADL ACAD4|LCAD acyl-CoA dehydrogenase long chain protein-coding 124.5-5 chr1 209299284 209299610 + 0.5 NA Intergenic Intergenic -26009 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 128.333-112 chr7 21819965 21820401 + 0.5 NA intron (NM_001277115, intron 65 of 81) L2c|LINE|L2 125716 NM_001127370 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 114.5-13 chr10 104286158 104286389 + 0.5 NA intron (NM_001191014, intron 3 of 4) L1MB7|LINE|L1 11107 NM_001191015 119391 Hs.107384 NM_183239 ENSG00000065621 GSTO2 GSTO 2-2|bA127L20.1 glutathione S-transferase omega 2 protein-coding 138.167-66 chr5 153361576 153362133 + 0.5 NA Intergenic Intergenic -128670 NM_001258019 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 123.333-44 chr16 48818484 48818898 + 0.5 NA Intergenic Intergenic -208511 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 145.667-95 chr7 95263810 95264144 + 0.5 NA intron (NM_017650, intron 11 of 15) MIR|SINE|MIR 60555 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 196.333-24 chr20 55502665 55503224 + 0.5 NA Intergenic Intergenic -75747 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 200.5-13 chr15 62619180 62619772 + 0.5 NA Intergenic Intergenic 25705 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 138.333-34 chr14 83371615 83371995 + 0.5 NA Intergenic Intergenic 729173 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 155.667-45 chr20 44652548 44652947 + 0.5 NA promoter-TSS (NM_001322050) promoter-TSS (NM_001322050) -989 NR_136160 100 Hs.654536 NM_000022 ENSG00000196839 ADA - adenosine deaminase protein-coding 115.333-88 chr5 162104819 162105190 + 0.5 NA intron (NM_198904, intron 6 of 9) intron (NM_198904, intron 6 of 9) 37362 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 130.333-24 chr12 20544461 20544874 + 0.5 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) -27197 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 114.167-80 chr5 67658084 67658343 + 0.5 NA Intergenic L1M6|LINE|L1 -11424 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 184.5-38 chr5 16920346 16920766 + 0.5 NA intron (NM_012334, intron 1 of 40) L1MD2|LINE|L1 15732 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 181.833-19 chr17 32880060 32880587 + 0.5 NA Intergenic AluSg|SINE|Alu -3199 NM_015194 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 135.5-47 chr2 189160262 189160722 + 0.5 NA intron (NM_000393, intron 1 of 53) L2c|LINE|L2 19269 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 202.667-57 chrX 101648845 101649374 + 0.5 NA Intergenic AluSz|SINE|Alu 10741 NM_177949 9823 Hs.48924 NM_014782 ENSG00000184867 ARMCX2 ALEX2|GASP9 armadillo repeat containing X-linked 2 protein-coding 163.667-46 chr22 32516770 32517364 + 0.5 NA intron (NM_133633, intron 11 of 11) MLT1H|LTR|ERVL-MaLR 41830 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 124.333-3 chr1 117146284 117146592 + 0.5 NA intron (NM_024626, intron 5 of 5) intron (NM_024626, intron 5 of 5) -24689 NM_025188 80263 Hs.301526 NM_025188 ENSG00000134253 TRIM45 RNF99 tripartite motif containing 45 protein-coding 184.5-56 chr9 116298836 116299374 + 0.5 NA intron (NM_002581, intron 9 of 21) intron (NM_002581, intron 9 of 21) 101501 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 146.667-78 chr6 83195308 83195703 + 0.5 NA intron (NM_001322339, intron 3 of 3) intron (NM_001322339, intron 3 of 3) -1605 NM_001199917 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 137.5-15 chr10 82085841 82086375 + 0.5 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 146812 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 145.167-27 chr17 53041364 53041778 + 0.5 NA Intergenic L1PB4|LINE|L1 56066 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 221.833-9 chr18 61556305 61556886 + 0.5 NA TTS (NM_031891) TTS (NM_031891) -191581 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 118-68 chr21 31164530 31164921 + 0.5 NA intron (NM_001353690, intron 16 of 27) intron (NM_001353690, intron 16 of 27) -3785 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 180.667-33 chr2 63750206 63750670 + 0.5 NA Intergenic Intergenic -90526 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 115.167-60 chr2 122779693 122779948 + 0.5 NA Intergenic Intergenic 293661 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 168.167-37 chr3 25190042 25190812 + 0.5 NA intron (NM_001290216, intron 4 of 10) Charlie9|DNA|hAT-Charlie -150375 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 170.5-70 chr8 132614835 132615480 + 0.5 NA intron (NR_135913, intron 6 of 10) intron (NR_135913, intron 6 of 10) -53678 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 162.333-68 chr7 7377305 7377717 + 0.5 NA intron (NM_001037763, intron 30 of 34) intron (NM_001037763, intron 30 of 34) 122357 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 162.5-6 chr10 70572911 70573361 + 0.5 NA Intergenic MIRb|SINE|MIR 29605 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 163-30 chr2 40744634 40745014 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -232389 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 120.333-4 chr1 41794033 41794422 + 0.5 NA intron (NM_024503, intron 1 of 8) THE1B|LTR|ERVL-MaLR 124695 NM_024503 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 117-130 chrX 115380080 115380486 + 0.5 NA Intergenic MIRb|SINE|MIR 90568 NM_001318840 51213 Hs.242183 NM_016383 ENSG00000102021 LUZP4 CT-28|CT-8|CT28|HOM-TES-85 leucine zipper protein 4 protein-coding 147.667-4 chr1 75276000 75276470 + 0.5 NA intron (NM_001320283, intron 3 of 21) intron (NM_001320283, intron 3 of 21) 141847 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 126.333-38 chr15 89111370 89111893 + 0.5 NA intron (NM_007011, intron 5 of 14) MLT1J|LTR|ERVL-MaLR 23175 NM_007011 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 151-9 chr11 39377940 39378507 + 0.5 NA Intergenic Intergenic 729365 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 177-63 chr6 117716296 117716763 + 0.5 NA Intergenic L1MA8|LINE|L1 41060 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 147.167-42 chr3 77726951 77727407 + 0.5 NA Intergenic Intergenic 321784 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 150.667-89 chr8 5244149 5244734 + 0.5 NA Intergenic AluSp|SINE|Alu -249527 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 157.5-26 chr17 64317804 64318424 + 0.5 NA Intergenic Intergenic -54854 NM_001288732 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 150.667-92 chr8 86179531 86179914 + 0.5 NA Intergenic AluSx1|SINE|Alu 50659 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 127.5-50 chr4 16904986 16905506 + 0.5 NA Intergenic Intergenic -6437 NM_001304435 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 131.333-58 chr2 222434502 222434909 + 0.5 NA intron (NM_152386, intron 1 of 4) intron (NM_152386, intron 1 of 4) 10162 NM_152386 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 118.833-42 chr2 165109299 165109655 + 0.5 NA intron (NM_006922, intron 21 of 27) L2a|LINE|L2 94573 NM_006922 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 115.833-19 chr14 53552233 53552579 + 0.5 NA Intergenic L2b|LINE|L2 396078 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 151.333-18 chr11 43642757 43643212 + 0.5 NA Intergenic Intergenic -37754 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 139.333-97 chrX 69632169 69632514 + 0.5 NA intron (NM_001005609, intron 1 of 7) L2c|LINE|L2 16228 NM_001005610 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 125.333-13 chr1 244438734 244439195 + 0.5 NA intron (NM_001365073, intron 1 of 12) L1MA3|LINE|L1 12945 NM_001126 159 Hs.498313 NM_001126 ENSG00000035687 ADSS ADEH|ADSS 2|ADSS2 adenylosuccinate synthase protein-coding 149.833-41 chr5 66079344 66079838 + 0.5 NA 3' UTR (NM_001253698, exon 24 of 24) 3' UTR (NM_001253698, exon 24 of 24) -64709 NM_001323534 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 126.667-22 chr15 44149835 44150175 + 0.5 NA intron (NM_001286490, intron 1 of 15) L1M4c|LINE|L1 44441 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 137.833-48 chr7 8367148 8367523 + 0.5 NA Intergenic L2a|LINE|L2 -66274 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 172.5-57 chr8 28152982 28153418 + 0.5 NA intron (NM_018091, intron 10 of 14) intron (NM_018091, intron 10 of 14) 60061 NM_001284220 55140 Hs.491336 NM_018091 ENSG00000134014 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 119.5-9 chr1 175733623 175734175 + 0.5 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 9696 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 136.667-87 chr6 41053897 41054240 + 0.5 NA intron (NM_006789, intron 1 of 2) intron (NM_006789, intron 1 of 2) 867 NM_006789 10930 Hs.555915 NM_006789 ENSG00000124701 APOBEC2 ARCD1|ARP1 apolipoprotein B mRNA editing enzyme catalytic subunit 2 protein-coding 185-38 chr4 168927706 168928323 + 0.5 NA 3' UTR (NM_001367569, exon 11 of 11) 3' UTR (NM_001367569, exon 11 of 11) 82241 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 162.167-34 chr3 116241724 116242241 + 0.5 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -118042 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 142.5-8 chr10 25237320 25237785 + 0.5 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -61276 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 164.5-53 chr7 10207424 10207808 + 0.5 NA Intergenic L2a|LINE|L2 -495060 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 161.333-61 chr5 69211859 69212181 + 0.5 NA Intergenic Intergenic -5740 NM_033281 92259 Hs.631971 NM_033281 ENSG00000134056 MRPS36 DC47|MRP-S36 mitochondrial ribosomal protein S36 protein-coding 144.333-53 chr20 47157463 47157878 + 0.5 NA intron (NM_172110, intron 10 of 13) L1M5|LINE|L1 -9297 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 114.167-72 chr4 93276587 93276900 + 0.5 NA intron (NM_001286838, intron 7 of 14) L1MB7|LINE|L1 -552010 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 151.833-40 chr4 46686223 46686619 + 0.5 NA Intergenic Intergenic 222824 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 126.5-14 chr12 17014773 17015311 + 0.5 NA Intergenic L1PBb|LINE|L1 26295 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 117.833-52 chr3 110364848 110365233 + 0.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 704919 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 126.5-84 chr8 89007863 89008225 + 0.5 NA Intergenic MamRTE1|LINE|RTE-BovB -680561 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 151.333-15 chr11 24527336 24527719 + 0.5 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 30474 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 136.833-69 chr7 89631446 89631784 + 0.5 NA Intergenic L1ME1|LINE|L1 -487785 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 135-41 chr2 107639387 107639734 + 0.5 NA Intergenic L1MB1|LINE|L1 110141 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 130.333-70 chr4 164228086 164228521 + 0.5 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) -30592 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 136.667-60 chr3 46744913 46745373 + 0.5 NA promoter-TSS (NR_160553) promoter-TSS (NR_160553) -388 NR_160553 377047 Hs.667712 NM_199183 ENSG00000188086 PRSS45P PRSS45|TESPL|TESSP5 serine protease 45, pseudogene pseudo 130-14 chr10 48208157 48208491 + 0.5 NA intron (NM_001018071, intron 13 of 28) MamTip1|DNA|hAT-Tip100 -33181 NM_001042512 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 120-31 chr14 26447329 26447731 + 0.5 NA 3' UTR (NM_001366394, exon 4 of 4) 3' UTR (NM_001366394, exon 4 of 4) 105900 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 169.833-2 chr1 169076438 169076947 + 0.5 NA intron (NR_104091, intron 1 of 4) intron (NR_104091, intron 1 of 4) 10313 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 116.833-20 chr17 20176347 20176825 + 0.5 NA intron (NM_001033554, intron 1 of 5) MLT1D|LTR|ERVL-MaLR 20514 NM_001243438 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 129.167-90 chr9 117892836 117893325 + 0.5 NA Intergenic MIRc|SINE|MIR 188677 NM_138557 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 133-66 chr4 114373079 114373735 + 0.5 NA Intergenic Intergenic -224995 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 145.5-61 chr5 27800797 27801143 + 0.5 NA Intergenic L1PA13|LINE|L1 328678 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 153.667-5 chr1 50497313 50497714 + 0.5 NA intron (NM_007051, intron 15 of 18) L1MB4|LINE|L1 -74070 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 168.5-60 chr6 110239046 110239517 + 0.5 NA Intergenic L2c|LINE|L2 58854 NM_015891 51362 Hs.428147 NM_015891 ENSG00000168438 CDC40 EHB3|PRP17|PRPF17 cell division cycle 40 protein-coding 150.5-5 chr1 222072605 222072991 + 0.5 NA Intergenic Intergenic -94278 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 113.333-56 chr2 188069623 188069939 + 0.5 NA intron (NR_126396, intron 2 of 2) L1PA15|LINE|L1 217910 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 135.667-21 chr10 110995232 110995676 + 0.5 NA intron (NM_007373, intron 3 of 8) intron (NM_007373, intron 3 of 8) 6528 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 135.833-30 chr2 1050161 1050468 + 0.5 NA intron (NM_018968, intron 1 of 16) L1M5|LINE|L1 -98922 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 132.167-10 chr10 67223620 67223994 + 0.5 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 179603 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 134-94 chr6 41928142 41928534 + 0.5 NA intron (NM_004053, intron 2 of 6) intron (NM_004053, intron 2 of 6) 6839 NM_004053 705 Hs.106880 NM_004053 ENSG00000112578 BYSL BYSTIN|Enp1 bystin like protein-coding 113.5-96 chrX 81626372 81626718 + 0.5 NA Intergenic Intergenic 424443 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 130-20 chr11 32201881 32202378 + 0.5 NA Intergenic Intergenic -58217 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 183.333-17 chr13 48224929 48225295 + 0.5 NA Intergenic Intergenic -8094 NM_021999 9445 Hs.643683 NM_021999 ENSG00000136156 ITM2B ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2 integral membrane protein 2B protein-coding 140-6 chr1 237209139 237209426 + 0.5 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 167098 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 175.667-52 chr4 130827974 130828446 + 0.5 NA Intergenic Intergenic 451849 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 144.167 chr1 44932237 44932628 + 0.5 NA intron (NM_001166588, intron 4 of 9) (AAAC)n|Simple_repeat|Simple_repeat 54163 NM_020365 8891 Hs.533549 NM_020365 ENSG00000070785 EIF2B3 EIF-2B|EIF2Bgamma eukaryotic translation initiation factor 2B subunit gamma protein-coding 134.833-43 chr4 54699399 54699954 + 0.5 NA exon (NM_001093772, exon 4 of 21) exon (NM_001093772, exon 4 of 21) 41748 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 118.833-38 chr2 88737538 88737831 + 0.5 NA intron (NM_144563, intron 7 of 8) intron (NM_144563, intron 7 of 8) -28218 NR_015424 645784 Hs.105323 NR_015424 ENSG00000230006 ANKRD36BP2 - ankyrin repeat domain 36B pseudogene 2 pseudo 254.333 chr1 89197217 89197895 + 0.5 NA intron (NM_052941, intron 1 of 10) intron (NM_052941, intron 1 of 10) 1386 NM_052941 115361 Hs.409925 NM_052941 ENSG00000162654 GBP4 Mpa2 guanylate binding protein 4 protein-coding 124.833-22 chr14 70616554 70616934 + 0.5 NA intron (NR_110071, intron 2 of 2) intron (NR_110071, intron 2 of 2) -16054 NM_001284211 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 120.667-111 chr7 133440777 133441044 + 0.5 NA intron (NM_021807, intron 7 of 17) MER41A|LTR|ERV1 150029 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 123.333-84 chr4 169280512 169280820 + 0.5 NA Intergenic AluSz|SINE|Alu -9710 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 113.167-50 chr3 47626841 47627285 + 0.5 NA intron (NM_003074, intron 24 of 27) MLT1H1|LTR|ERVL-MaLR 34631 NR_145791 109623484 NR_145791 SNORD146 - small nucleolar RNA, C/D box 146 snoRNA 122-54 chr3 114574234 114574790 + 0.5 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) 49694 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 163-48 chr5 86226814 86227398 + 0.5 NA Intergenic Intergenic -55338 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 135-34 chr2 12178884 12179274 + 0.5 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) -20051 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 150-33 chr2 975476 975879 + 0.5 NA intron (NM_018968, intron 1 of 16) intron (NM_018968, intron 1 of 16) -24285 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 164.333-43 chr3 87819158 87819663 + 0.5 NA intron (NM_001322208, intron 1 of 2) intron (NM_001322208, intron 1 of 2) 26704 NM_001322209 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 172-48 chr4 53079302 53079879 + 0.5 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 217273 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 130.667-61 chr4 31257932 31258375 + 0.5 NA Intergenic Intergenic 87009 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 152.5-31 chr20 17962643 17963005 + 0.5 NA non-coding (NR_003045, exon 1 of 1) non-coding (NR_003045, exon 1 of 1) 122 NR_003045 692086 Hs.680747 NR_003045 ENSG00000212232 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 160.5-13 chr15 38103300 38103722 + 0.5 NA Intergenic Intergenic -30521 NR_147199 107984773 Hs.285193 NR_147199 ENSG00000236914 LINC01852 - long intergenic non-protein coding RNA 1852 ncRNA 152.833-30 chr2 68782885 68783394 + 0.5 NA intron (NM_001166277, intron 3 of 9) MIR|SINE|MIR 8229 NM_001166276 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 193.333-36 chr20 60452591 60453159 + 0.5 NA Intergenic Intergenic 20101 NR_109903 101928048 Hs.572803 NR_109903 LOC101928048 - uncharacterized LOC101928048 ncRNA 126.833-14 chr10 96627957 96628427 + 0.5 NA intron (NM_152309, intron 9 of 16) UCON132b|DNA|hAT-Tip100 -41180 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 116.5-20 chr14 66381860 66382155 + 0.5 NA Intergenic Intergenic -104364 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 127.667-7 chr10 14842949 14843368 + 0.5 NA intron (NR_103464, intron 4 of 4) intron (NR_103464, intron 4 of 4) 4852 NR_103464 51182 Hs.534169 NM_016299 ENSG00000187522 HSPA14 HSP70-4|HSP70L1 heat shock protein family A (Hsp70) member 14 protein-coding 180.5-21 chr17 61257975 61258431 + 0.5 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 109501 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 118.833-46 chr20 32432141 32432397 + 0.5 NA intron (NM_015338, intron 9 of 11) MER68|LTR|ERVL 51221 NM_001351680 140688 Hs.516978 NM_080616 ENSG00000197183 NOL4L C20orf112|C20orf113 nucleolar protein 4 like protein-coding 120 chr1 69931634 69931952 + 0.5 NA intron (NM_001370785, intron 8 of 26) MIRb|SINE|MIR 12471 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 202.833-28 chr7 80010584 80011281 + 0.5 NA Intergenic L1M2|LINE|L1 -123899 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 117.667-38 chr12 128106741 128107053 + 0.5 NA intron (NR_104647, intron 3 of 4) intron (NR_104647, intron 3 of 4) 11244 NR_104647 100996679 Hs.539127 NR_104647 ENSG00000256551 LINC02369 - long intergenic non-protein coding RNA 2369 ncRNA 120.833-54 chr4 163540366 163540914 + 0.5 NA intron (NM_017923, intron 3 of 3) MIRc|SINE|MIR 45950 NM_018352 55319 Hs.267446 NM_018352 ENSG00000198498 TMA16 C4orf43 translation machinery associated 16 homolog protein-coding 131.333-72 chr3 192240349 192240808 + 0.5 NA intron (NR_046596, intron 1 of 4) L2c|LINE|L2 1948 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 123.167-37 chr17 30800978 30801430 + 0.5 NA intron (NR_073118, intron 1 of 6) AluJr|SINE|Alu 23488 NM_015986 51379 Hs.649372 NM_015986 ENSG00000176390 CRLF3 CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2 cytokine receptor like factor 3 protein-coding 169.5-72 chr8 78368688 78369345 + 0.5 NA Intergenic L2c|LINE|L2 -147324 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 225.5-27 chr2 37482074 37482734 + 0.5 NA Intergenic MER52A|LTR|ERV1 137774 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 160.667-5 chr1 104560431 104561023 + 0.5 NA Intergenic HERVL-int|LTR|ERVL 487704 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 134.833-66 chr8 121112073 121112525 + 0.5 NA Intergenic Intergenic -300253 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 154-61 chr4 66588374 66588854 + 0.5 NA Intergenic Intergenic 311790 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 125.5-78 chr8 51676424 51676719 + 0.5 NA intron (NM_144651, intron 1 of 22) AluSz|SINE|Alu 132874 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 145.333-70 chr6 7494433 7494898 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -47006 NM_004415 1832 Hs.519873 NM_004415 ENSG00000096696 DSP DCWHKTA|DP desmoplakin protein-coding 138.833-20 chr14 21892939 21893417 + 0.5 NA Intergenic Intergenic -222161 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 167.333-16 chr11 27124982 27125376 + 0.5 NA intron (NM_003986, intron 7 of 8) MIR3|SINE|MIR 84364 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 169-42 chr4 80714359 80714822 + 0.5 NA intron (NM_001206997, intron 4 of 6) MamRep605|LTR?|LTR? -316118 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 229 chr1 115915656 115916252 + 0.5 NA Intergenic AluSg|SINE|Alu -3422 NR_125969 101928995 Hs.559119 NR_125969 ENSG00000228127 LINC01649 - long intergenic non-protein coding RNA 1649 ncRNA 142.333-17 chr10 120086476 120086835 + 0.5 NA Intergenic Intergenic 128142 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 133-50 chr2 221637810 221638127 + 0.5 NA Intergenic L2c|LINE|L2 -63766 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 143.667-78 chr4 42160972 42161360 + 0.5 NA Intergenic Intergenic -8511 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 149.167-6 chr10 86528020 86528518 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -6477 NM_015045 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 209.833-7 chr12 52005835 52006336 + 0.5 NA promoter-TSS (NM_181711) promoter-TSS (NM_181711) -861 NM_181711 160622 Hs.407202 NM_181711 ENSG00000161835 GRASP TAMALIN general receptor for phosphoinositides 1 associated scaffold protein protein-coding 135.667-59 chr2 171514800 171515151 + 0.5 NA Intergenic Intergenic -7258 NM_001256909 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 133.5-10 chr10 11750233 11750760 + 0.5 NA intron (NM_024693, intron 3 of 4) intron (NM_024693, intron 3 of 4) 8114 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 163.333-65 chr5 54923723 54924073 + 0.5 NA Intergenic L1PA7|LINE|L1 61695 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 152.833-46 chr3 123743554 123744080 + 0.5 NA intron (NM_001321309, intron 4 of 32) intron (NM_001321309, intron 4 of 32) 54173 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 119.833-65 chr4 103040673 103040954 + 0.5 NA intron (NM_001370207, intron 9 of 10) intron (NM_001370207, intron 9 of 10) -21108 NM_001100874 150159 Hs.666728 NM_139173 ENSG00000164037 SLC9B1 NHA1|NHEDC1 solute carrier family 9 member B1 protein-coding 137.667-75 chr4 64459858 64460350 + 0.5 NA Intergenic Intergenic -50644 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 124-75 chr5 112071798 112072309 + 0.5 NA Intergenic L2a|LINE|L2 -88473 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 135.667-62 chr2 214882942 214883414 + 0.5 NA intron (NR_110292, intron 2 of 3) intron (NR_110292, intron 2 of 3) 36231 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 123.833-31 chr2 81204446 81204912 + 0.5 NA Intergenic MIR|SINE|MIR 262267 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 146.333-40 chr18 3565175 3565602 + 0.5 NA intron (NM_001242762, intron 6 of 9) AluSx1|SINE|Alu -28726 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 151.167-58 chrX 53994583 53994959 + 0.5 NA intron (NM_001184898, intron 12 of 21) intron (NM_001184898, intron 12 of 21) 48376 NM_001184898 23133 Hs.133352 NM_015107 ENSG00000172943 PHF8 JHDM1F|KDM7B|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 114.667-104 chr5 133196777 133197155 + 0.5 NA 3' UTR (NM_015082, exon 16 of 16) 3' UTR (NM_015082, exon 16 of 16) 144953 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 177-31 chr2 9521707 9522369 + 0.5 NA intron (NM_003183, intron 7 of 18) LTR79|LTR|ERVL 33792 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 136.5-81 chr6 55867400 55867839 + 0.5 NA intron (NM_001329754, intron 1 of 5) MER45A|DNA|hAT-Tip100 7971 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 115.5-5 chr1 102710294 102710569 + 0.5 NA Intergenic Intergenic 398065 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 147.667-58 chr5 127347833 127348268 + 0.5 NA intron (NM_001308121, intron 4 of 13) intron (NM_001308121, intron 4 of 13) 57254 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 137-56 chr2 103413737 103414193 + 0.5 NA Intergenic Intergenic -429536 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 138.333-38 chr15 60007436 60007951 + 0.5 NA TTS (NM_012182) TTS (NM_012182) 3382 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 115.5-65 chr3 83195873 83196189 + 0.5 NA Intergenic Intergenic 1209889 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 135.167-19 chr11 118479340 118479763 + 0.5 NA intron (NM_005933, intron 5 of 35) intron (NM_005933, intron 5 of 35) 43059 NM_005933 4297 Hs.258855 NM_005933 ENSG00000118058 KMT2A ALL-1|CXXC7|HRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS lysine methyltransferase 2A protein-coding 181.5-49 chr5 98609291 98609739 + 0.5 NA Intergenic L1PA8|LINE|L1 -159117 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 148.667-38 chr2 144769451 144769907 + 0.5 NA intron (NR_033870, intron 2 of 4) intron (NR_033870, intron 2 of 4) 101712 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 129.5-85 chr8 87757564 87757992 + 0.5 NA Intergenic L2a|LINE|L2 116237 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 154.167-53 chr5 17225069 17225608 + 0.5 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 7707 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 114.333-122 chr8 120140263 120140621 + 0.5 NA intron (NM_021110, intron 1 of 47) L2a|LINE|L2 15340 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 179.667-60 chrX 16793867 16794401 + 0.5 NA intron (NM_001168683, intron 1 of 7) MIRb|SINE|MIR 7668 NM_018360 55787 Hs.555961 NM_018360 ENSG00000086712 TXLNG CXorf15|ELRG|FIAT|LSR5|TXLNGX taxilin gamma protein-coding 162.333-33 chr2 116432048 116432478 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR 1088448 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 151.167-54 chr8 87213810 87214350 + 0.5 NA intron (NM_173538, intron 5 of 10) THE1B-int|LTR|ERVL-MaLR 347665 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 125.5-88 chr9 128044894 128045298 + 0.5 NA Intergenic AluJb|SINE|Alu 22224 NM_197956 203245 Hs.373606 NM_197956 ENSG00000171169 NAIF1 C9orf90|bA379C10.2 nuclear apoptosis inducing factor 1 protein-coding 148-26 chr13 32842255 32842757 + 0.5 NA intron (NR_047020, intron 4 of 4) intron (NR_047020, intron 4 of 4) 69146 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 198.333-26 chr20 34884849 34885390 + 0.5 NA intron (NM_001076552, intron 2 of 18) AluJb|SINE|Alu 8507 NM_018677 55902 Hs.517034 NM_018677 ENSG00000131069 ACSS2 ACAS2|ACECS|ACS|ACSA|dJ1161H23.1 acyl-CoA synthetase short chain family member 2 protein-coding 124.833-65 chr4 35121949 35122372 + 0.5 NA Intergenic Intergenic -852413 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 139.833-70 chr7 45479205 45479730 + 0.5 NA Intergenic L1MC3|LINE|L1 -94673 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 160.334-2 chr14 88821839 88822610 + 0.5 NA Intergenic Intergenic -1929 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 118-107 chr6 56712073 56712358 + 0.5 NA intron (NM_001144770, intron 3 of 94) intron (NM_001144770, intron 3 of 94) -69326 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 171.167-20 chr16 67189070 67189461 + 0.5 NA intron (NM_178516, intron 2 of 13) (TTAT)n|Simple_repeat|Simple_repeat 871 NM_178516 283849 Hs.647356 NM_178516 ENSG00000179044 EXOC3L1 EXOC3L exocyst complex component 3 like 1 protein-coding 142.167-89 chr9 136734753 136735274 + 0.5 NA Intergenic Intergenic -6829 NR_003672 84973 Hs.495480 NR_003672 ENSG00000233016 SNHG7 NCRNA00061 small nucleolar RNA host gene 7 ncRNA 118.333-9 chr10 8321942 8322265 + 0.5 NA Intergenic LFSINE_Vert|SINE|tRNA -53798 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 137.667-7 chr1 211755126 211755527 + 0.5 NA intron (NM_014873, intron 6 of 7) AluSc8|SINE|Alu -74311 NR_135818 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 188.833-32 chr5 125008350 125008783 + 0.5 NA Intergenic MIRb|SINE|MIR -28265 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 151.167-33 chr22 34599674 34600254 + 0.5 NA Intergenic Intergenic 397952 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 135.667-6 chr1 184921314 184921647 + 0.5 NA intron (NM_052966, intron 1 of 13) L1ME4a|LINE|L1 53028 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 127-73 chr4 16285720 16286029 + 0.5 NA Intergenic Intergenic 59211 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 133.833-63 chr5 74593484 74593857 + 0.5 NA Intergenic AluSx3|SINE|Alu -46353 NM_001292004 3074 Hs.69293 NM_000521 ENSG00000049860 HEXB ENC-1AS|HEL-248|HEL-S-111 hexosaminidase subunit beta protein-coding 135-84 chr6 132005954 132006342 + 0.5 NA Intergenic AluSz|SINE|Alu -54776 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 119.333-101 chr7 77350541 77350856 + 0.5 NA intron (NR_146937, intron 18 of 31) AluSx1|SINE|Alu -64500 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 172.333-61 chr4 139448741 139449202 + 0.5 NA Intergenic Intergenic 5070 NR_159963 107984036 Hs.605782 NR_159963 LOC107984036 - uncharacterized LOC107984036 ncRNA 135.833-74 chr9 32201788 32202116 + 0.5 NA Intergenic Intergenic -182651 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 126.5-26 chr14 63039682 63040181 + 0.5 NA intron (NM_139318, intron 1 of 10) intron (NM_139318, intron 1 of 10) 5527 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 126.333-2 chr1 42536545 42536947 + 0.5 NA intron (NM_001355227, intron 8 of 18) MLT1A|LTR|ERVL-MaLR 3726 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 153.833-12 chr10 119706309 119706853 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR -19466 NM_001243195 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 201.667-33 chr5 94552044 94552540 + 0.5 NA intron (NM_001145678, intron 2 of 20) L1M2|LINE|L1 66312 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 136.833-8 chr11 12194919 12195265 + 0.5 NA intron (NR_144420, intron 3 of 27) AluJr|SINE|Alu 31409 NR_106739 102466906 NR_106739 ENSG00000275373 MIR6124 hsa-mir-6124 microRNA 6124 ncRNA 152.5-42 chr3 149994790 149995139 + 0.5 NA Intergenic L1PB4|LINE|L1 -11598 NM_001079809 653659 Hs.652908 NM_001079809 TMEM183B C1ORF37DUP|C1orf37-DUP transmembrane protein 183B protein-coding 123.333-118 chr9 133213419 133213883 + 0.5 NA Intergenic L1MD2|LINE|L1 -4401 NM_001288987 29989 Hs.449629 NM_014581 ENSG00000171102 OBP2B LCN14|OBPIIb odorant binding protein 2B protein-coding 193.167-12 chr11 19300291 19300983 + 0.5 NA Intergenic Intergenic -50087 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 115.167 chr1 29991798 29992241 + 0.5 NA Intergenic Intergenic 45593 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 118.333-88 chr4 172501855 172502384 + 0.5 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 186798 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 148.167-41 chr2 160819272 160819694 + 0.5 NA Intergenic L1MC1|LINE|L1 -317472 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 127.833-18 chr13 35917196 35917549 + 0.5 NA intron (NM_001330071, intron 4 of 16) intron (NM_001330071, intron 4 of 16) -61511 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 183.333-25 chr2 14321357 14321750 + 0.5 NA intron (NR_103814, intron 1 of 3) intron (NR_103814, intron 1 of 3) 79405 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 139.333-16 chr10 100323187 100323614 + 0.5 NA intron (NM_016112, intron 2 of 15) AluSx|SINE|Alu 6828 NM_001253837 9033 Hs.159241 NM_016112 ENSG00000107593 PKD2L1 PCL|PKD2L|PKDL|TRPP3 polycystin 2 like 1, transient receptor potential cation channel protein-coding 142.833-19 chr15 72078863 72079387 + 0.5 NA intron (NM_006901, intron 1 of 41) L1MC2|LINE|L1 -35133 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 126.833-30 chr14 49163355 49163651 + 0.5 NA Intergenic Intergenic 422877 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 217.167-13 chr5 7433576 7434472 + 0.5 NA intron (NM_020546, intron 2 of 24) L1ME3Cz|LINE|L1 37886 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 177.667-53 chr4 66416453 66416941 + 0.5 NA Intergenic Intergenic 139873 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 175.333-31 chr22 20866491 20867065 + 0.5 NA intron (NM_004782, intron 1 of 4) intron (NM_004782, intron 1 of 4) 7771 NM_004782 9342 Hs.108002 NM_004782 ENSG00000099940 SNAP29 CEDNIK|SNAP-29 synaptosome associated protein 29 protein-coding 130.833-30 chr2 64370713 64371098 + 0.5 NA Intergenic L1ME2|LINE|L1 -30057 NR_106995 102465833 NR_106995 ENSG00000264297 MIR4433B hsa-mir-4433b microRNA 4433b ncRNA 126-48 chr2 202345246 202345552 + 0.5 NA Intergenic AluJr|SINE|Alu -30928 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 113.333-34 chr13 70307525 70307911 + 0.5 NA Intergenic L2a|LINE|L2 -199225 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 199.833-18 chr2 209518409 209519005 + 0.5 NA intron (NM_001039538, intron 2 of 14) intron (NM_001039538, intron 2 of 14) -60629 NM_001363913 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 184.667-31 chr22 28320767 28321276 + 0.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -138848 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 191-37 chr21 15638206 15638618 + 0.5 NA Intergenic Intergenic -91522 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 174.5-39 chr6 41679663 41680277 + 0.5 NA Intergenic Intergenic 41502 NM_001300805 4188 Hs.520119 NM_005586 ENSG00000112559 MDFI I-MF|I-mfa MyoD family inhibitor protein-coding 253-22 chr6 83182750 83183541 + 0.5 NA intron (NR_159812, intron 4 of 14) intron (NR_159812, intron 4 of 14) 10120 NM_001367286 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 155.333-72 chr4 60190191 60190592 + 0.5 NA Intergenic L1PA14|LINE|L1 -732228 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 133-92 chr8 50719606 50719938 + 0.5 NA intron (NM_001287814, intron 16 of 16) intron (NM_001287814, intron 16 of 16) 555641 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 162-38 chr2 224989071 224989499 + 0.5 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) -6858 NM_001363762 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 155.833-13 chr12 3584230 3584601 + 0.5 NA intron (NM_019854, intron 8 of 9) intron (NM_019854, intron 8 of 9) -91596 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 122-74 chr6 24582386 24582894 + 0.5 NA intron (NM_001350405, intron 4 of 19) intron (NM_001350405, intron 4 of 19) 587 NM_001252328 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 AAVR|DYLX2|DYX2|NMIG KIAA0319 protein-coding 180-19 chr19 28208681 28209241 + 0.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -397727 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 167.667-18 chr12 13931339 13931750 + 0.5 NA intron (NM_000834, intron 1 of 12) L2a|LINE|L2 48812 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 127.333-33 chr14 43435303 43435729 + 0.5 NA Intergenic MLT1A|LTR|ERVL-MaLR 1071767 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 151.167-36 chr4 26687871 26688184 + 0.5 NA intron (NM_001292054, intron 9 of 17) intron (NM_001292054, intron 9 of 17) 103943 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 178-53 chr6 166350435 166350967 + 0.5 NA non-coding (NR_040022, exon 2 of 2) non-coding (NR_040022, exon 2 of 2) 8070 NR_040022 100289495 NR_040022 LOC100289495 - uncharacterized LOC100289495 ncRNA 122.5-96 chr8 72910930 72911262 + 0.5 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -97768 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 155.167-39 chr5 89584441 89584883 + 0.5 NA Intergenic Intergenic 432058 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 134.833-33 chr21 30392572 30392978 + 0.5 NA Intergenic Charlie8|DNA|hAT-Charlie -3256 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 167-9 chr10 82880667 82881282 + 0.5 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -648054 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 164.833-25 chr2 163484396 163484827 + 0.5 NA Intergenic Intergenic 251397 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 153.5-40 chr20 44817864 44818312 + 0.5 NA Intergenic (GACAGA)n|Simple_repeat|Simple_repeat -7542 NM_182970 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 160-39 chr17 55887819 55888233 + 0.5 NA Intergenic Intergenic 136921 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 128.833-17 chr10 69848729 69849158 + 0.5 NA intron (NM_001368898, intron 3 of 33) intron (NM_001368898, intron 3 of 33) 47037 NM_001368897 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 118.667-69 chr20 17446358 17446653 + 0.5 NA intron (NM_002594, intron 8 of 11) MLT1I|LTR|ERVL-MaLR 84874 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 162.333-34 chr2 143452301 143453021 + 0.5 NA intron (NM_018460, intron 8 of 13) (T)n|Simple_repeat|Simple_repeat 323242 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 134-2 chr1 24126819 24127329 + 0.5 NA intron (NM_021258, intron 5 of 6) AluSz|SINE|Alu -14939 NM_152372 127294 Hs.523413 NM_152372 ENSG00000142661 MYOM3 - myomesin 3 protein-coding 125.167-34 chr2 4676885 4677156 + 0.5 NA Intergenic AluSq2|SINE|Alu -20798 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 136.167-8 chr1 179156199 179156578 + 0.5 NA intron (NM_007314, intron 1 of 11) intron (NM_007314, intron 1 of 11) -13312 NM_001136000 27 Hs.159472 NM_005158 ENSG00000143322 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding 206.833-30 chr9 11552541 11553035 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 939582 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 120.833-20 chr17 61363732 61364245 + 0.5 NA intron (NR_136397, intron 1 of 2) intron (NR_136397, intron 1 of 2) 3716 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 131.5-7 chr10 99630167 99630558 + 0.5 NA Intergenic AluSz|SINE|Alu -9923 NM_031212 81894 Hs.403790 NM_031212 ENSG00000155287 SLC25A28 MFRN2|MRS3/4|MRS4L|NPD016 solute carrier family 25 member 28 protein-coding 161.167-14 chr13 108707760 108708180 + 0.5 NA intron (NM_015011, intron 2 of 34) MER106A|DNA|hAT-Charlie 78359 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 190.333-26 chr18 8892234 8892638 + 0.5 NA Intergenic L1ME4b|LINE|L1 175055 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 132-32 chr15 80126738 80127257 + 0.5 NA intron (NM_001242918, intron 4 of 4) AluJb|SINE|Alu -26002 NM_000137 2184 Hs.73875 NM_000137 ENSG00000103876 FAH - fumarylacetoacetate hydrolase protein-coding 164.833-9 chr10 105369590 105370117 + 0.5 NA Intergenic L1ME5|LINE|L1 450480 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 134.833-40 chr3 188354953 188355624 + 0.5 NA intron (NM_001167671, intron 2 of 10) AluSg4|SINE|Alu 129883 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 127-77 chr4 59029978 59030360 + 0.5 NA intron (NR_133942, intron 1 of 1) L1MC5a|LINE|L1 16596 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 135.333-12 chr10 86862946 86863310 + 0.5 NA intron (NM_004329, intron 2 of 12) AluSx1|SINE|Alu -92631 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 129.167-60 chr5 67099867 67100345 + 0.5 NA intron (NM_001297651, intron 4 of 25) intron (NM_001297651, intron 4 of 25) 95451 NM_001297651 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 126.833-21 chr11 31200050 31200476 + 0.5 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) 169476 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 120.667-80 chr3 141159703 141160037 + 0.5 NA Intergenic L1PA14|LINE|L1 -71955 NM_001037172 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 120-44 chr18 5256753 5257004 + 0.5 NA Intergenic Intergenic 18778 NR_015389 339290 Hs.643553 NR_015389 ENSG00000263753 LINC00667 - long intergenic non-protein coding RNA 667 ncRNA 177.833-42 chr6 135229859 135230449 + 0.5 NA Intergenic Intergenic -9006 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 160.167-8 chr10 122833239 122833650 + 0.5 NA intron (NR_037912, intron 7 of 7) intron (NR_037912, intron 7 of 7) 12413 NM_022034 50624 Hs.647182 NM_022034 ENSG00000138161 CUZD1 ERG-1|ERG1|ITMAP1|UO-44 CUB and zona pellucida like domains 1 protein-coding 129.5-27 chr16 79750617 79751037 + 0.5 NA intron (NR_104663, intron 4 of 5) intron (NR_104663, intron 4 of 5) -19644 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 146-54 chr4 92583034 92583541 + 0.5 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 278888 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 171.667-41 chr2 149216857 149217292 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie 98900 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 139.667-98 chr9 93278908 93279388 + 0.5 NA intron (NM_001282394, intron 19 of 29) L1ME1|LINE|L1 67155 NM_001368813 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 173.833-4 chr1 154492154 154492703 + 0.5 NA intron (NR_135169, intron 2 of 5) intron (NR_135169, intron 2 of 5) -9791 NM_001098475 126668 Hs.387671 NM_182499 ENSG00000163239 TDRD10 - tudor domain containing 10 protein-coding 254-28 chr7 30852049 30852818 + 0.5 NA intron (NR_037598, intron 13 of 19) intron (NR_037598, intron 13 of 19) -59261 NM_198098 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 125 chr1 31848490 31848988 + 0.5 NA Intergenic Intergenic -32688 NM_001281988 90853 Hs.62604 NM_144569 ENSG00000134668 SPOCD1 PPP1R146 SPOC domain containing 1 protein-coding 117.5 chr1 43070441 43070833 + 0.5 NA Intergenic Intergenic -77267 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 147.167-2 chr1 51131343 51131637 + 0.5 NA intron (NM_001136508, intron 3 of 4) intron (NM_001136508, intron 3 of 4) 29262 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 123.167-35 chr16 67062122 67062505 + 0.5 NA intron (NM_001368708, intron 3 of 4) AluSq2|SINE|Alu 33164 NM_001368708 865 Hs.460988 NM_001755 ENSG00000067955 CBFB PEBP2B core-binding factor subunit beta protein-coding 124.5-77 chr8 110701852 110702233 + 0.5 NA Intergenic Intergenic 325391 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 117-113 chr7 69595653 69596078 + 0.5 NA non-coding (NR_108105, exon 2 of 2) non-coding (NR_108105, exon 2 of 2) 1759 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 116-68 chr4 125373812 125374343 + 0.5 NA intron (NM_001291303, intron 1 of 16) MIR3|SINE|MIR 57665 NM_024582 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 133.333-130 chrX 87386538 87386945 + 0.5 NA Intergenic Intergenic -131061 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 129-53 chr3 18946475 18946937 + 0.5 NA Intergenic Intergenic -201804 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 243.333-5 chr12 57468707 57469503 + 0.5 NA intron (NM_005269, intron 10 of 11) MIR|SINE|MIR 8762 NM_001319852 64333 Hs.437126 NM_032496 ENSG00000123329 ARHGAP9 10C|RGL1 Rho GTPase activating protein 9 protein-coding 113.833-3 chr1 40125663 40125959 + 0.5 NA Intergenic FLAM_C|SINE|Alu -28341 NM_000310 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 158.5-64 chr5 29575776 29576326 + 0.5 NA Intergenic L1M4a1|LINE|L1 -180075 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 126.167-51 chr22 29621864 29622239 + 0.5 NA intron (NM_181831, intron 1 of 14) intron (NM_181831, intron 1 of 14) 18418 NM_181825 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 140-82 chr8 109226589 109226951 + 0.5 NA Intergenic MSTB|LTR|ERVL-MaLR 103163 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 133.167-60 chr7 16057346 16057698 + 0.5 NA Intergenic L1ME1|LINE|L1 -152964 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 167.167-2 chr1 79480839 79481275 + 0.5 NA Intergenic L1PA15|LINE|L1 -474327 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 130.333-59 chr3 44259910 44260436 + 0.5 NA intron (NM_001145030, intron 4 of 19) THE1D|LTR|ERVL-MaLR 18287 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 115.667-21 chr12 8660370 8660673 + 0.5 NA intron (NM_001297710, intron 2 of 7) intron (NM_001297710, intron 2 of 7) 2305 NR_123734 8076 Hs.512842 NM_003480 ENSG00000197614 MFAP5 AAT9|MAGP-2|MAGP2|MFAP-5|MP25 microfibril associated protein 5 protein-coding 200.5-49 chr9 118655761 118656343 + 0.5 NA Intergenic L2b|LINE|L2 -23619 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 256.5-9 chr16 49186785 49187514 + 0.5 NA Intergenic Intergenic 94689 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 127.167-62 chr3 172300625 172301122 + 0.5 NA intron (NM_001135095, intron 9 of 25) intron (NM_001135095, intron 9 of 25) 147583 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 129.833-17 chr13 53168515 53168893 + 0.5 NA Intergenic Intergenic -16804 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 126.333-92 chr6 102678816 102679170 + 0.5 NA Intergenic Intergenic 1280008 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 151-48 chr3 139726911 139727591 + 0.5 NA Intergenic Intergenic -49201 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 137.5-55 chr3 14405986 14406284 + 0.5 NA intron (NR_103507, intron 1 of 13) intron (NR_103507, intron 1 of 13) 3529 NR_103507 6533 Hs.529488 NM_003043 ENSG00000131389 SLC6A6 TAUT solute carrier family 6 member 6 protein-coding 166.833-10 chr11 28307391 28307736 + 0.5 NA intron (NM_001113528, intron 6 of 6) intron (NM_001113528, intron 6 of 6) 169985 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 136.333-13 chr10 112583320 112583802 + 0.5 NA intron (NM_001365712, intron 6 of 8) intron (NM_001365712, intron 6 of 8) -50609 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 151-19 chr14 33879434 33879945 + 0.5 NA Intergenic L1MB2|LINE|L1 71385 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 116.833-67 chr9 123612018 123612434 + 0.5 NA intron (NM_001352968, intron 9 of 18) intron (NM_001352968, intron 9 of 18) -126604 NR_106972 102465688 NR_106972 ENSG00000274932 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 175.833-46 chr8 136177092 136177614 + 0.5 NA Intergenic Intergenic -353445 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 229.833-19 chr6 39498820 39499330 + 0.5 NA intron (NM_001289021, intron 12 of 21) L2b|LINE|L2 -67685 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 204.167-33 chr8 136520258 136520843 + 0.5 NA Intergenic L1MB5|LINE|L1 -10248 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 136.667-27 chr15 73099777 73100263 + 0.5 NA intron (NM_002499, intron 1 of 28) L2c|LINE|L2 47536 NM_001172624 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 169.167-18 chr15 46467337 46467930 + 0.5 NA Intergenic Intergenic -716456 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 166.167-64 chr8 125136146 125136559 + 0.5 NA intron (NM_001349486, intron 3 of 7) intron (NM_001349486, intron 3 of 7) 44492 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 146.667-54 chr2 162410512 162410951 + 0.5 NA intron (NM_033272, intron 9 of 15) L1PA16|LINE|L1 66363 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 140.833-67 chrX 87402148 87402564 + 0.5 NA Intergenic Intergenic -115446 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 146.833-67 chr9 90843975 90844439 + 0.5 NA exon (NM_003177, exon 2 of 14) exon (NM_003177, exon 2 of 14) 16787 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 135.833-45 chr3 4225440 4225844 + 0.5 NA Intergenic Intergenic -77662 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 142.5-44 chr2 195082456 195082861 + 0.5 NA Intergenic Intergenic 352063 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 170.667-83 chrX 76477207 76477642 + 0.5 NA Intergenic L1MA2|LINE|L1 49714 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 129.167-20 chr12 110900001 110900500 + 0.5 NA intron (NM_152591, intron 10 of 11) L1MC|LINE|L1 20350 NM_000432 4633 Hs.75535 NM_000432 ENSG00000111245 MYL2 CMH10|MLC-2s/v|MLC2 myosin light chain 2 protein-coding 137.5-58 chr3 71640826 71641256 + 0.5 NA Intergenic MIR|SINE|MIR -57052 NM_032682 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 118.667-4 chr1 71489285 71489700 + 0.5 NA intron (NM_173808, intron 6 of 6) MIRb|SINE|MIR 347520 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 199.167-30 chr4 160035075 160035787 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -257647 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 124.833-41 chr2 99382329 99382806 + 0.5 NA intron (NM_015904, intron 13 of 23) intron (NM_015904, intron 13 of 23) 45178 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 149.333-33 chr14 51702575 51703017 + 0.5 NA intron (NM_001042481, intron 6 of 14) L2a|LINE|L2 -14487 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 175.667-75 chr8 131343727 131344442 + 0.5 NA Intergenic Intergenic -303175 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 123.333-15 chr10 26956699 26957058 + 0.5 NA Intergenic Intergenic -14877 NR_026795 387644 Hs.529965 NR_026795 ENSG00000283709 FAM238C C10orf51|LINC00202|LINC00202-1|NCRNA00202|bB27G4.1 family with sequence similarity 238 member C ncRNA 183.667-73 chr7 26171604 26172254 + 0.5 NA intron (NM_004289, intron 1 of 3) L2a|LINE|L2 19731 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 200-66 chr8 127522446 127523268 + 0.5 NA Intergenic L1ME3D|LINE|L1 -40718 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 150.833-38 chr5 15728566 15729062 + 0.5 NA intron (NM_001278317, intron 2 of 3) MIRc|SINE|MIR -113812 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 143.167-58 chr4 100069463 100070078 + 0.5 NA Intergenic LTR33C|LTR|ERVL 119276 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 171.667-47 chr21 29194417 29194875 + 0.5 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 1152 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 178.167-10 chr14 20055695 20056271 + 0.5 NA Intergenic Intergenic -4062 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 133.833-21 chr11 113072188 113072550 + 0.5 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -108909 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 137.833-46 chr6 69698087 69698441 + 0.5 NA intron (NM_001367272, intron 13 of 15) intron (NM_001367272, intron 13 of 15) 98202 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 117.833-8 chr10 121105481 121105794 + 0.5 NA Intergenic Intergenic 254275 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 144.167-40 chr2 163509211 163509626 + 0.5 NA Intergenic Intergenic 226590 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 117-19 chr11 76470581 76470886 + 0.5 NA intron (NM_001300942, intron 8 of 21) L2a|LINE|L2 25708 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 199.833-20 chr4 165122925 165123727 + 0.5 NA Intergenic AluJb|SINE|Alu -10466 NM_001100389 201931 Hs.704511 NM_152681 ENSG00000170088 TMEM192 - transmembrane protein 192 protein-coding 145.333-65 chr5 119407346 119407769 + 0.5 NA Intergenic AluSx3|SINE|Alu -44940 NM_001199292 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 132.5-16 chr12 27933404 27933812 + 0.5 NA Intergenic Intergenic 36368 NM_198966 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 136.167-52 chr3 104057888 104058255 + 0.5 NA Intergenic L1ME3G|LINE|L1 -533955 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 170.333-37 chr2 35103642 35104024 + 0.5 NA Intergenic Intergenic -367572 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 114.833-41 chr22 25558795 25559229 + 0.5 NA Intergenic Intergenic -5663 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 167.667-3 chr1 66053096 66053566 + 0.5 NA intron (NM_001037340, intron 1 of 14) MIR|SINE|MIR -2613 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 117.667-29 chr11 75192143 75192450 + 0.5 NA intron (NM_007256, intron 8 of 13) L2a|LINE|L2 32464 NM_001145211 11309 Hs.7884 NM_007256 ENSG00000137491 SLCO2B1 OATP-B|OATP2B1|OATPB|SLC21A9 solute carrier organic anion transporter family member 2B1 protein-coding 151.167-52 chr8 27528935 27529513 + 0.5 NA intron (NM_001979, intron 12 of 18) intron (NM_001979, intron 12 of 18) 38081 NM_001256484 2053 Hs.212088 NM_001979 ENSG00000120915 EPHX2 ABHD20|CEH|SEH epoxide hydrolase 2 protein-coding 190.333-57 chr8 73540497 73541077 + 0.5 NA intron (NM_001164382, intron 11 of 13) L1M4a1|LINE|L1 120713 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 278.333-11 chr3 171445529 171446268 + 0.5 NA intron (NM_001161563, intron 1 of 31) intron (NM_001161563, intron 1 of 31) 14507 NM_001161560 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 170.5-12 chr10 101365875 101366426 + 0.5 NA intron (NM_003939, intron 1 of 13) intron (NM_003939, intron 1 of 13) 11985 NM_033637 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 193.167-10 chr10 106525331 106525717 + 0.5 NA Intergenic Intergenic 385359 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 133-73 chr5 105748894 105749470 + 0.5 NA Intergenic L1PREC2|LINE|L1 649708 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 168.167-55 chr7 140851488 140851869 + 0.5 NA intron (NR_148928, intron 1 of 17) L1ME3G|LINE|L1 73251 NR_148928 673 Hs.324250 NM_004333 ENSG00000157764 BRAF B-RAF1|B-raf|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 131.833-68 chr8 101979438 101979755 + 0.5 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -4836 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 154.667-68 chr7 81108070 81108458 + 0.5 NA Intergenic MIRb|SINE|MIR -185875 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 181.667-32 chr20 8485065 8485530 + 0.5 NA intron (NM_182734, intron 3 of 32) L4_B_Mam|LINE|RTE-X 236593 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 175.167-19 chr14 60349874 60350445 + 0.5 NA Intergenic Intergenic 26963 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 127-57 chr20 47380615 47381042 + 0.5 NA Intergenic Intergenic -23939 NM_001281773 23613 Hs.446240 NM_012408 ENSG00000101040 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger MYND-type containing 8 protein-coding 120-88 chr5 25148990 25149281 + 0.5 NA intron (NR_147006, intron 3 of 4) L1MA4|LINE|L1 41521 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 114.833-61 chr6 65461139 65461434 + 0.5 NA intron (NM_198283, intron 4 of 9) LTR55|LTR|ERVL? 118518 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 168.667-4 chr1 183452270 183452789 + 0.5 NA Intergenic L1M5|LINE|L1 19453 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 123.667-13 chr10 72394703 72395070 + 0.5 NA intron (NM_001195519, intron 5 of 6) intron (NM_001195519, intron 5 of 6) -39967 NR_157570 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 134.833-57 chr7 3917428 3917768 + 0.5 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -212087 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 152.833-9 chr10 59178706 59179256 + 0.5 NA intron (NM_001143774, intron 1 of 4) intron (NM_001143774, intron 1 of 4) 1514 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 131.833-74 chr9 111452838 111453112 + 0.5 NA intron (NM_001363756, intron 1 of 48) AluJb|SINE|Alu 30587 NM_001364930 23392 Hs.368255 NM_001080398 ENSG00000136813 ECPAS ECM29|KIAA0368 Ecm29 proteasome adaptor and scaffold protein-coding 117.167 chr1 38388070 38388492 + 0.5 NA Intergenic L1ME1|LINE|L1 -86915 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 127.667-90 chr7 117334013 117334468 + 0.5 NA Intergenic L1MEd|LINE|L1 -11182 NR_024047 7472 Hs.567356 NM_003391 ENSG00000105989 WNT2 INT1L1|IRP Wnt family member 2 protein-coding 178.833-12 chr14 74490727 74491257 + 0.5 NA intron (NM_001363688, intron 1 of 3) MIR|SINE|MIR 2520 NM_006432 10577 Hs.433222 NM_006432 ENSG00000119655 NPC2 EDDM1|HE1 NPC intracellular cholesterol transporter 2 protein-coding 124-79 chr6 10186755 10187074 + 0.5 NA Intergenic MER104|DNA|TcMar-Tc2 -217588 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 121.333-25 chr14 24949064 24949405 + 0.5 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 99766 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 116.5-21 chr14 73411763 73412198 + 0.5 NA intron (NM_001005743, intron 1 of 12) AluJr|SINE|Alu 46600 NM_001005745 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 210-19 chr2 120413254 120413775 + 0.5 NA Intergenic L1MA5A|LINE|L1 52835 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 117-57 chr2 201543008 201543350 + 0.5 NA intron (NM_001168221, intron 11 of 15) L1MB1|LINE|L1 75999 NM_152525 151254 Hs.335788 NM_152525 ENSG00000155754 C2CD6 ALS2CR11 C2 calcium dependent domain containing 6 protein-coding 159.833-46 chr7 129413137 129413730 + 0.5 NA intron (NM_001130720, intron 11 of 16) AluY|SINE|Alu -20999 NM_020704 57464 Hs.489988 NM_020704 ENSG00000128578 STRIP2 FAM40B|FAR11B striatin interacting protein 2 protein-coding 142.5-40 chr2 102607619 102608013 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR -11737 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 148.333-28 chr13 64356573 64356943 + 0.5 NA Intergenic Intergenic -280747 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 164.833-7 chr10 69135206 69135650 + 0.5 NA intron (NM_001318944, intron 3 of 9) intron (NM_001318944, intron 3 of 9) 11250 NM_001318945 9559 Hs.499925 NM_004896 ENSG00000122958 VPS26A HB58|Hbeta58|PEP8A|VPS26 VPS26, retromer complex component A protein-coding 144.333-32 chr14 83091224 83091591 + 0.5 NA Intergenic Intergenic 448775 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 133.5-5 chr1 183545384 183545737 + 0.5 NA intron (NM_001331007, intron 17 of 23) intron (NM_001331007, intron 17 of 23) 45044 NM_001190789 4688 Hs.587558 NM_000433 ENSG00000116701 NCF2 NCF-2|NOXA2|P67-PHOX|P67PHOX neutrophil cytosolic factor 2 protein-coding 170.333-33 chr17 62369667 62370340 + 0.5 NA promoter-TSS (NM_001144933) promoter-TSS (NM_001144933) -215 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 140.333-50 chr3 118641171 118641564 + 0.5 NA promoter-TSS (NR_135573) promoter-TSS (NR_135573) -401 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 165.833-2 chr1 44286621 44287357 + 0.5 NA intron (NM_001301698, intron 5 of 7) intron (NM_001301698, intron 5 of 7) -34430 NR_132966 106635545 NR_132966 SNORA110 - small nucleolar RNA, H/ACA box 110 snoRNA 209.333-13 chr2 16286658 16287441 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 236622 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 139-48 chr4 65422974 65423360 + 0.5 NA intron (NM_001281767, intron 5 of 16) L1MC3|LINE|L1 246321 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 128-16 chr10 96212394 96212659 + 0.5 NA intron (NM_001114094, intron 7 of 15) MIR|SINE|MIR 58990 NR_047683 29760 Hs.665244 NM_013314 ENSG00000095585 BLNK AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca B cell linker protein-coding 121.833-24 chr17 82373527 82373887 + 0.5 NA promoter-TSS (NM_018949) promoter-TSS (NM_018949) -570 NM_018949 2837 Hs.192720 NM_018949 ENSG00000181408 UTS2R GPR14|UR-2-R|UTR|UTR2 urotensin 2 receptor protein-coding 124.5-83 chr9 108449405 108449840 + 0.5 NA Intergenic Intergenic 406364 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 135.667-33 chr14 55463189 55463580 + 0.5 NA Intergenic HAL1|LINE|L1 -22839 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 116-58 chr21 46101204 46101671 + 0.5 NA intron (NM_058174, intron 1 of 27) L1MB3|LINE|L1 3318 NM_058175 1292 Hs.420269 NM_001849 ENSG00000142173 COL6A2 BTHLM1|PP3610|UCMD1 collagen type VI alpha 2 chain protein-coding 139.667-44 chr18 51088481 51088849 + 0.5 NA Intergenic L1MD1|LINE|L1 58452 NM_005359 4089 Hs.75862 NM_005359 ENSG00000141646 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding 118-110 chr6 170548764 170549109 + 0.5 NA intron (NM_002793, intron 2 of 5) intron (NM_002793, intron 2 of 5) 4371 NM_002793 5689 Hs.352768 NM_002793 ENSG00000008018 PSMB1 HC5|PMSB1|PSC5 proteasome subunit beta 1 protein-coding 114.667-21 chr12 46916275 46916701 + 0.5 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -90491 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 121-30 chr16 60547306 60547693 + 0.5 NA Intergenic MIRb|SINE|MIR -187706 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 141.5-11 chr11 24864047 24864521 + 0.5 NA intron (NM_001252010, intron 5 of 9) intron (NM_001252010, intron 5 of 9) 367231 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 120.667-87 chr4 36330930 36331227 + 0.5 NA intron (NM_001170700, intron 8 of 9) intron (NM_001170700, intron 8 of 9) 49462 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 149.667-14 chr11 86737439 86737977 + 0.5 NA Intergenic Intergenic -53363 NM_001293180 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 serine protease 23 protein-coding 134.333-70 chr2 233811775 233812069 + 0.5 NA exon (NM_001367507, exon 24 of 42) exon (NM_001367507, exon 24 of 42) 36198 NM_001367507 339766 Hs.361778 NM_001287395 ENSG00000185038 MROH2A HEATR7B1 maestro heat like repeat family member 2A protein-coding 134.333-81 chr4 30888600 30888994 + 0.5 NA intron (NM_032457, intron 1 of 2) L1MC5|LINE|L1 168428 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 156-90 chr8 124954672 124955067 + 0.5 NA Intergenic Intergenic 12861 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 240.334-5 chr19 29786305 29787186 + 0.5 NA Intergenic AluSx3|SINE|Alu -25246 NM_001322261 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 181.333-30 chr2 133609869 133610356 + 0.5 NA Intergenic Intergenic -41649 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 164.333-37 chr2 239630445 239631153 + 0.5 NA Intergenic Intergenic -132061 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 148.667-46 chr3 39521746 39522175 + 0.5 NA intron (NR_003090, intron 4 of 5) intron (NR_003090, intron 4 of 5) 19894 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 188.333-16 chr14 40969020 40969503 + 0.5 NA intron (NR_109758, intron 2 of 3) intron (NR_109758, intron 2 of 3) 14550 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 118-59 chr2 181048797 181049116 + 0.5 NA intron (NM_001278555, intron 3 of 5) intron (NM_001278555, intron 3 of 5) 67832 NM_001278554 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 128.333 chr1 30273039 30273490 + 0.5 NA Intergenic Intergenic -235652 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 124.5-65 chr6 94551376 94551719 + 0.5 NA Intergenic Intergenic 833244 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 131.167-4 chr1 107540164 107540479 + 0.5 NA Intergenic L1M5|LINE|L1 148178 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 172.5-30 chr2 126289091 126289671 + 0.5 NA Intergenic L1MCa|LINE|L1 -171396 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 131.333-18 chr11 57081045 57081621 + 0.5 NA Intergenic Intergenic 43799 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 141-27 chr14 66740209 66740766 + 0.5 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 233080 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 141.667-36 chr17 33824756 33825212 + 0.5 NA intron (NM_001094, intron 1 of 9) MIR|SINE|MIR -291224 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 120.667-32 chr12 118531673 118532152 + 0.5 NA Intergenic Intergenic 155357 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 115.833-37 chr2 167314623 167314970 + 0.5 NA Intergenic Intergenic 127424 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 144.5-54 chr22 40784891 40785313 + 0.5 NA intron (NR_104235, intron 5 of 10) AluSx|SINE|Alu 28856 NR_039923 100616283 NR_039923 ENSG00000266594 MIR4766 mir-4766 microRNA 4766 ncRNA 145.667-57 chr21 20607585 20607953 + 0.5 NA Intergenic L1MA1|LINE|L1 195339 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 121.833-9 chr11 42555972 42556522 + 0.5 NA Intergenic Intergenic -302557 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 143.333-39 chr2 178138757 178139212 + 0.5 NA Intergenic L1M6|LINE|L1 26547 NM_152945 129831 Hs.377257 NM_152945 ENSG00000155636 RBM45 DRB1|RB-1 RNA binding motif protein 45 protein-coding 114.333-12 chr10 62611006 62611289 + 0.5 NA intron (NM_199452, intron 1 of 6) intron (NM_199452, intron 1 of 6) 90699 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 190-6 chr10 29978206 29978665 + 0.5 NA Intergenic AluSz|SINE|Alu 81151 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 135-81 chr5 178000759 178001128 + 0.5 NA Intergenic MIR|SINE|MIR -4701 NM_006261 5626 Hs.158301 NM_006261 ENSG00000175325 PROP1 CPHD2|PROP-1 PROP paired-like homeobox 1 protein-coding 134.167-52 chr22 34771078 34771550 + 0.5 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 226602 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 161.667-29 chr13 94204684 94205058 + 0.5 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) -16880 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 139.167-73 chr9 75831685 75832177 + 0.5 NA Intergenic Charlie2a|DNA|hAT-Charlie -58713 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 121.167-74 chr6 64397708 64398295 + 0.5 NA intron (NM_001292009, intron 28 of 43) L1M5|LINE|L1 591165 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 116-19 chr12 67206012 67206340 + 0.5 NA Intergenic L1MEi|LINE|L1 -63182 NM_001329675 55832 Hs.546407 NM_018448 ENSG00000111530 CAND1 TIP120|TIP120A cullin associated and neddylation dissociated 1 protein-coding 117.5-61 chr5 156009931 156010407 + 0.5 NA Intergenic Intergenic -316588 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 113.333 chr1 30501542 30501903 + 0.5 NA Intergenic L1MEc|LINE|L1 -217050 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 114.167-84 chr6 41866883 41867200 + 0.5 NA intron (NM_001286554, intron 1 of 5) intron (NM_001286554, intron 1 of 5) 4596 NM_001286554 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 139.333-2 chr1 92515070 92515451 + 0.5 NA intron (NM_001350198, intron 19 of 19) LTR79|LTR|ERVL -28335 NM_005263 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 118-81 chr4 43976869 43977250 + 0.5 NA Intergenic Intergenic -39802 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 184.333-50 chr5 155965491 155966113 + 0.5 NA Intergenic LTR3|LTR|ERVK -360955 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 130.5-19 chr14 49927581 49928005 + 0.5 NA Intergenic Intergenic 34711 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 118.167-44 chr3 89177869 89178225 + 0.5 NA intron (NM_182644, intron 2 of 6) intron (NM_182644, intron 2 of 6) 70426 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 141.833-37 chr6 47035118 47035524 + 0.5 NA intron (NM_153840, intron 1 of 14) intron (NM_153840, intron 1 of 14) 7011 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 123.667-25 chr12 14158289 14158651 + 0.5 NA Intergenic AluSc|SINE|Alu -178114 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 156.333-61 chr3 23572406 23572859 + 0.5 NA intron (NM_001370225, intron 5 of 5) L1PA17|LINE|L1 -233323 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 142.167-86 chr9 27063816 27064316 + 0.5 NA 3' UTR (NM_001349928, exon 20 of 20) 3' UTR (NM_001349928, exon 20 of 20) -45075 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 171.5-59 chr7 109032822 109033241 + 0.5 NA Intergenic Intergenic -148444 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 123.167-66 chr4 30365480 30365938 + 0.5 NA Intergenic Intergenic -354660 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 188.5-18 chr14 84357226 84357913 + 0.5 NA Intergenic L1MA3|LINE|L1 -914363 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 141.5-72 chr5 43480200 43480555 + 0.5 NA intron (NM_022483, intron 1 of 2) AluJr|SINE|Alu 3488 NM_022483 64417 Hs.732093 NM_022483 ENSG00000151881 TMEM267 C5orf28 transmembrane protein 267 protein-coding 122.833-83 chr8 62627029 62627352 + 0.5 NA intron (NM_001304533, intron 3 of 6) MIRb|SINE|MIR -350671 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 148-28 chr14 70593753 70594128 + 0.5 NA intron (NM_005466, intron 3 of 7) intron (NM_005466, intron 3 of 7) 6750 NM_005466 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 172.167-33 chr3 67689578 67690111 + 0.5 NA intron (NR_109992, intron 3 of 6) intron (NR_109992, intron 3 of 6) 35147 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 153.167-25 chr2 74767053 74767592 + 0.5 NA Intergenic Intergenic -65333 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 115-62 chr5 91207686 91208021 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 106549 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 214.833-16 chr2 145527692 145528284 + 0.5 NA Intergenic Intergenic 860021 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 122.333-61 chr20 51471678 51471944 + 0.5 NA intron (NM_012340, intron 5 of 10) intron (NM_012340, intron 5 of 10) -18834 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 113.833-41 chr2 149230317 149230617 + 0.5 NA Intergenic Intergenic -99518 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 113.5-60 chr22 26396946 26397343 + 0.5 NA Intergenic L1PB4|LINE|L1 -32116 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 175.5-9 chr10 74494321 74494884 + 0.5 NA intron (NM_001369124, intron 6 of 9) intron (NM_001369124, intron 6 of 9) 34722 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 126.833 chr1 43304327 43304618 + 0.5 NA intron (NM_001253357, intron 1 of 22) L2|LINE|L2 3490 NM_001253357 7075 Hs.78824 NM_005424 ENSG00000066056 TIE1 JTK14|TIE tyrosine kinase with immunoglobulin like and EGF like domains 1 protein-coding 114.667-113 chr6 164508424 164508811 + 0.5 NA Intergenic Intergenic 313446 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 143.667-57 chr2 75422745 75423144 + 0.5 NA Intergenic Intergenic -101124 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 193-14 chr12 112203083 112203608 + 0.5 NA intron (NM_001109662, intron 54 of 75) intron (NM_001109662, intron 54 of 75) -40024 NR_106921 102465519 NR_106921 ENSG00000283793 MIR6861 hsa-mir-6861 microRNA 6861 ncRNA 158.667-92 chr8 141100133 141100765 + 0.5 NA Intergenic MIRb|SINE|MIR -28140 NM_001352890 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 126.167-25 chr14 70394300 70394776 + 0.5 NA intron (NM_001202549, intron 1 of 4) intron (NM_001202549, intron 1 of 4) 22552 NM_001202548 100529257 Hs.443661 NM_001202547 ENSG00000258644 SYNJ2BP-COX16 - SYNJ2BP-COX16 readthrough protein-coding 129.167-22 chr14 48599953 48600212 + 0.5 NA Intergenic Intergenic -805068 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 184.333-7 chr12 120246152 120246645 + 0.5 NA intron (NM_002859, intron 1 of 10) AluSz|SINE|Alu 3765 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 118-82 chr4 56580549 56580835 + 0.5 NA intron (NM_001256475, intron 5 of 8) L1MB7|LINE|L1 50086 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 137-18 chr11 78632646 78633204 + 0.5 NA Intergenic L1M2|LINE|L1 -58061 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 122.167-43 chr3 22251626 22252054 + 0.5 NA Intergenic MIRb|SINE|MIR 294701 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 158.333-26 chr14 47415868 47416264 + 0.5 NA intron (NM_001113498, intron 1 of 16) MLT1A0-int|LTR|ERVL-MaLR -72820 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 143.333-38 chr2 177595159 177595492 + 0.5 NA Intergenic Intergenic 23417 NM_152275 92104 Hs.128384 NM_152275 ENSG00000197557 TTC30A IFT70A|TTC30B tetratricopeptide repeat domain 30A protein-coding 180.5-27 chr2 35275942 35276430 + 0.5 NA Intergenic L1M5|LINE|L1 -195219 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 199.667-26 chr2 106636967 106637645 + 0.5 NA Intergenic LTR82A|LTR|ERVL 149942 NM_001368307 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 161.333-34 chr19 46117186 46117634 + 0.5 NA Intergenic Intergenic 7278 NM_207393 388555 Hs.365496 NM_207393 ENSG00000188624 IGFL3 UNQ483 IGF like family member 3 protein-coding 133.833-71 chr7 11431003 11431328 + 0.5 NA intron (NM_015204, intron 13 of 26) intron (NM_015204, intron 13 of 26) 401033 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 125.5-66 chr5 140827124 140827375 + 0.5 NA promoter-TSS (NM_018909) promoter-TSS (NM_018909) -711 NM_031848 56142 Hs.199343 NM_018909 ENSG00000081842 PCDHA6 CNR2|CNRN2|CNRS2|CRNR2|PCDH-ALPHA6 protocadherin alpha 6 protein-coding 178.167-11 chr14 57511558 57512160 + 0.5 NA Intergenic Intergenic -18002 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 141.333-37 chr15 81455888 81456332 + 0.5 NA Intergenic L1PB4|LINE|L1 -81897 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 173-48 chr6 36655251 36655727 + 0.5 NA Intergenic Intergenic 19637 NR_109836 101154753 Hs.741557 NR_109836 ENSG00000281450 PANDAR PANDA promoter of CDKN1A antisense DNA damage activated RNA ncRNA 185.667-12 chr12 114077530 114078007 + 0.5 NA Intergenic Intergenic -111443 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 135.333-29 chr17 15349001 15349546 + 0.5 NA Intergenic Intergenic -7676 NM_031898 64518 Hs.414648 NM_031898 ENSG00000125409 TEKT3 - tektin 3 protein-coding 126-78 chr5 118264614 118265028 + 0.5 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -17753 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 148.667-68 chr6 98856852 98857333 + 0.5 NA Intergenic Intergenic 22518 NM_005604 5454 Hs.182505 NM_005604 ENSG00000184486 POU3F2 BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7 POU class 3 homeobox 2 protein-coding 118-74 chr22 30334168 30334604 + 0.5 NA 3' UTR (NM_005877, exon 16 of 16) 3' UTR (NM_005877, exon 16 of 16) -7445 NM_001204240 83874 Hs.655273 NM_031937 ENSG00000099992 TBC1D10A EPI64|TBC1D10|dJ130H16.1|dJ130H16.2 TBC1 domain family member 10A protein-coding 149.333 chr1 59459824 59460221 + 0.5 NA intron (NM_001350794, intron 6 of 14) intron (NM_001350794, intron 6 of 14) -55608 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 222-26 chr3 89332454 89333115 + 0.5 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 225163 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 165.5-55 chr6 104463420 104464010 + 0.5 NA Intergenic Intergenic 395831 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 175.5-23 chr2 69749747 69750133 + 0.5 NA intron (NM_001320700, intron 1 of 12) AluSz|SINE|Alu 7806 NM_001320702 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 129-74 chr5 109496155 109496664 + 0.5 NA Intergenic Intergenic -86435 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 134-44 chr15 90572448 90572937 + 0.5 NA intron (NM_001042574, intron 2 of 14) AluSx|SINE|Alu 42769 NM_001042574 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 192.333-7 chr14 69517119 69517932 + 0.5 NA intron (NM_001161498, intron 6 of 12) intron (NM_001161498, intron 6 of 12) 32797 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 149.167-43 chr4 114513543 114513965 + 0.5 NA Intergenic AluJr|SINE|Alu -84648 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 155-68 chr6 71943300 71943767 + 0.5 NA intron (NM_001350412, intron 1 of 2) intron (NM_001350412, intron 1 of 2) 56830 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 117.333-60 chr21 14362620 14362945 + 0.5 NA Intergenic Intergenic 20364 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 118.333-92 chr5 61000905 61001255 + 0.5 NA intron (NM_174889, intron 1 of 3) intron (NM_174889, intron 1 of 3) 55875 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 181.167-13 chr2 70295759 70296230 + 0.5 NA TTS (NM_001329752) TTS (NM_001329752) -2223 NM_001317165 6637 Hs.465167 NM_003096 ENSG00000143977 SNRPG SMG|Sm-G small nuclear ribonucleoprotein polypeptide G protein-coding 120.333-84 chr4 42260448 42260843 + 0.5 NA Intergenic Intergenic -107990 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 149.667-41 chr2 70486422 70486939 + 0.5 NA intron (NM_003236, intron 2 of 5) AluJo|SINE|Alu -5040 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 127.667-9 chr10 32103163 32103599 + 0.5 NA Intergenic MSTB2|LTR|ERVL-MaLR -46956 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 183-34 chr20 41741544 41742076 + 0.5 NA Intergenic L1PA16|LINE|L1 -123433 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 146.167-22 chr16 17602179 17602492 + 0.5 NA Intergenic Intergenic -131375 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 124.667-14 chr10 71820706 71821259 + 0.5 NA intron (NM_001042465, intron 9 of 14) MER3|DNA|hAT-Charlie 9099 NM_001171935 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 135.167-27 chr14 58071779 58072362 + 0.5 NA intron (NM_001001872, intron 5 of 7) L2a|LINE|L2 80143 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 143.5-65 chr5 101421958 101422315 + 0.5 NA Intergenic L1MC3|LINE|L1 -518854 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 124.833-34 chr2 22264381 22264860 + 0.5 NA Intergenic L1MEc|LINE|L1 -271859 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 122.833-51 chr20 61199962 61200528 + 0.5 NA Intergenic L1MEc|LINE|L1 -52016 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 136.667-88 chr6 104830479 104830954 + 0.5 NA intron (NR_146792, intron 6 of 24) intron (NR_146792, intron 6 of 24) 28830 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 172.167-24 chr18 77406998 77407370 + 0.5 NA Intergenic L2a|LINE|L2 157336 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 173-34 chr22 48009568 48010210 + 0.5 NA Intergenic L1MC3|LINE|L1 -264475 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 150.667-17 chr11 56919120 56919581 + 0.5 NA Intergenic L1PA7|LINE|L1 -69564 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 118.333-30 chr14 21128150 21128543 + 0.5 NA Intergenic L1MA8|LINE|L1 -23642 NM_001102454 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 122.667-101 chr9 105697841 105698234 + 0.5 NA intron (NM_018112, intron 1 of 5) intron (NM_018112, intron 1 of 5) 3496 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 197.333-8 chr12 15327040 15327837 + 0.5 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 4930 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 172.333-68 chr7 7516309 7516671 + 0.5 NA intron (NM_001037763, intron 7 of 34) intron (NM_001037763, intron 7 of 34) 19383 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 113.667-70 chr2 144430637 144431162 + 0.5 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -88715 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 161.667-18 chr10 55668586 55669321 + 0.5 NA Intergenic Tigger17a|DNA|TcMar-Tigger -41011 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 167-51 chr5 165518182 165518563 + 0.5 NA Intergenic L1M4|LINE|L1 1048093 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 115-5 chr1 209500412 209500679 + 0.5 NA Intergenic L1M2a|LINE|L1 68412 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 168.833-20 chr16 86617767 86618466 + 0.5 NA Intergenic Intergenic 39607 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 153-30 chr2 126912598 126913111 + 0.5 NA Intergenic Intergenic 13964 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 122.833-7 chr1 236239962 236240324 + 0.5 NA intron (NM_019891, intron 6 of 15) AluSx|SINE|Alu 41815 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 180.167-34 chr3 84969295 84969951 + 0.5 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 10634 NM_001167674 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 133.333-94 chr4 163640360 163640722 + 0.5 NA intron (NM_001166373, intron 4 of 7) L4_A_Mam|LINE|RTE-X -27007 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 138.5-10 chr10 19563836 19564139 + 0.5 NA intron (NM_001142308, intron 32 of 39) MSTB|LTR|ERVL-MaLR 164563 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 133.333-113 chr7 38578109 38578517 + 0.5 NA intron (NM_001635, intron 1 of 20) intron (NM_001635, intron 1 of 20) 53060 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 117-131 chrX 144701291 144701632 + 0.5 NA Intergenic Intergenic -546042 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 164-53 chr5 46404323 46404827 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -708195 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 180.167-20 chr16 49291386 49291985 + 0.5 NA Intergenic Intergenic -9847 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 160.333-49 chr5 4428368 4428995 + 0.5 NA Intergenic L1M4a2|LINE|L1 -344800 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 147-61 chr4 104413868 104414394 + 0.5 NA Intergenic Intergenic -76834 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 140-24 chr14 65578962 65579329 + 0.5 NA intron (NM_178156, intron 2 of 9) intron (NM_178156, intron 2 of 9) 108043 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 172.333-19 chr12 79331329 79331784 + 0.5 NA intron (NM_001291901, intron 7 of 9) intron (NM_001291901, intron 7 of 9) -87701 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 116.667-15 chr10 97283640 97284094 + 0.5 NA intron (NM_032900, intron 1 of 11) intron (NM_032900, intron 1 of 11) 8770 NM_032900 84986 Hs.80305 NM_032900 ENSG00000213390 ARHGAP19 - Rho GTPase activating protein 19 protein-coding 130.167-31 chr2 141961558 141962026 + 0.5 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 169909 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 144.333-83 chr7 134152546 134152955 + 0.5 NA intron (NM_001365700, intron 5 of 15) L1ME3F|LINE|L1 25410 NM_144648 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 134.333-90 chr5 68899214 68899533 + 0.5 NA Intergenic Intergenic 130554 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 142.5-22 chr14 62211541 62212022 + 0.5 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -71808 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 133.167-70 chr8 129791434 129791751 + 0.5 NA Intergenic L1MA3|LINE|L1 -4968 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 126.5-69 chr4 120342939 120343437 + 0.5 NA Intergenic Intergenic -276340 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 171-21 chr2 66498746 66499328 + 0.5 NA intron (NM_002398, intron 7 of 12) intron (NM_002398, intron 7 of 12) -58707 NR_046625 100873998 Hs.734698 NR_046625 ENSG00000230749 MEIS1-AS2 MEIS1-AS1 MEIS1 antisense RNA 2 ncRNA 127.833-37 chr2 42534435 42534857 + 0.5 NA intron (NM_001282755, intron 2 of 17) MLT1J|LTR|ERVL-MaLR -33399 NM_001282756 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 122.5-36 chr15 71684754 71685087 + 0.5 NA intron (NM_001286429, intron 2 of 11) L1M5|LINE|L1 6619 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 213-18 chr2 46729319 46729982 + 0.5 NA intron (NM_144949, intron 1 of 1) Tigger3b|DNA|TcMar-Tigger 30355 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 183.667-16 chr10 81249928 81250653 + 0.5 NA Intergenic Intergenic 600493 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 118.667-56 chr2 10387196 10387469 + 0.5 NA intron (NM_001258359, intron 1 of 4) intron (NM_001258359, intron 1 of 4) 18568 NM_001258359 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 151.667-65 chr5 33430735 33431272 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -9693 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 133.833-13 chr11 7121006 7121489 + 0.5 NA Intergenic L1MC4|LINE|L1 32249 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 118.833-54 chr3 82636237 82636620 + 0.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger 650286 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 118.833-64 chr5 104913034 104913434 + 0.5 NA Intergenic Intergenic -186240 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 117.667-127 chr8 137850649 137851169 + 0.5 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 232636 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 153.167-47 chr6 36974136 36974442 + 0.5 NA intron (NR_130739, intron 7 of 11) AluJr|SINE|Alu 12262 NM_001271641 23787 Hs.485262 NM_014341 ENSG00000137409 MTCH1 CGI-64|PIG60|PSAP|SLC25A49 mitochondrial carrier 1 protein-coding 135-22 chr13 84397877 84398233 + 0.5 NA intron (NR_046871, intron 3 of 6) L1PA12|LINE|L1 257453 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 168.167-25 chr17 72729758 72730402 + 0.5 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -89608 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 113.5-4 chr1 110761283 110761647 + 0.5 NA Intergenic L2b|LINE|L2 -86525 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 148.5-32 chr17 72093642 72094028 + 0.5 NA TTS (NR_110827) TTS (NR_110827) 21502 NR_110827 101928205 Hs.620808 NR_110827 ENSG00000226101 LINC02097 - long intergenic non-protein coding RNA 2097 ncRNA 136.833-67 chr7 43193020 43193488 + 0.5 NA intron (NM_015052, intron 2 of 29) MER41B|LTR|ERV1 42359 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 147.5-79 chr8 46083142 46083778 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 534183 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 120.333-54 chr2 64819638 64819883 + 0.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR 43871 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 156.667-40 chr17 26884785 26885350 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 204174 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 129.167-24 chr14 63484872 63485219 + 0.5 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 23193 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 228.5-20 chr3 88070481 88071344 + 0.5 NA intron (NM_001366093, intron 1 of 7) L1ME4a|LINE|L1 11657 NM_001350134 55279 Hs.591650 NM_018293 ENSG00000175105 ZNF654 - zinc finger protein 654 protein-coding 184.333-24 chr2 17387061 17387664 + 0.5 NA Intergenic Intergenic 131078 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 207.667-26 chr20 48820387 48820941 + 0.5 NA intron (NM_020820, intron 1 of 39) MER20|DNA|hAT-Charlie 7335 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 125.5-2 chr1 80565535 80565859 + 0.5 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) 29942 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 145.833-78 chr8 120270686 120271109 + 0.5 NA intron (NM_021110, intron 26 of 47) L1PA15|LINE|L1 145795 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 141.5-5 chr1 205548812 205549262 + 0.5 NA Intergenic L1ME4a|LINE|L1 -19977 NM_181644 148808 Hs.567714 NM_181644 ENSG00000174514 MFSD4A MFSD4|UNQ3064 major facilitator superfamily domain containing 4A protein-coding 130.333-86 chr7 51529131 51529644 + 0.5 NA Intergenic MER31A|LTR|ERV1 -136131 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 115.5-51 chr2 62968072 62968436 + 0.5 NA intron (NM_001354215, intron 15 of 24) intron (NM_001354215, intron 15 of 24) 79457 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 197.667-5 chr1 78234702 78235270 + 0.5 NA intron (NR_027310, intron 1 of 5) intron (NR_027310, intron 1 of 5) 5387 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 185.833-35 chr8 131402806 131403386 + 0.5 NA Intergenic L2|LINE|L2 -362187 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 163.333-25 chr14 68155689 68156158 + 0.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 332331 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 160.167-41 chr3 28088663 28089150 + 0.5 NA Intergenic Intergenic -152713 NR_138585 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 236.5-5 chr1 220445392 220445998 + 0.5 NA Intergenic L1MB4|LINE|L1 -82441 NM_018650 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 116-47 chr2 73865421 73865718 + 0.5 NA 3' UTR (NM_001353969, exon 11 of 11) 3' UTR (NM_001353969, exon 11 of 11) -27439 NM_001199893 72 Hs.516105 NM_001615 ENSG00000163017 ACTG2 ACT|ACTA3|ACTE|ACTL3|ACTSG|VSCM actin gamma 2, smooth muscle protein-coding 148.333-10 chr1 236540984 236541571 + 0.5 NA intron (NM_201543, intron 6 of 10) Tigger3a|DNA|TcMar-Tigger -16769 NR_034040 100287902 Hs.677376 NR_034040 ENSG00000223776 LGALS8-AS1 - LGALS8 antisense RNA 1 ncRNA 133.667-29 chr14 73310520 73311004 + 0.5 NA intron (NM_001005745, intron 5 of 10) MIRc|SINE|MIR -64761 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 171-35 chr3 120509586 120510135 + 0.5 NA Intergenic MER50-int|LTR|ERV1 -58868 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 143-67 chr5 108087853 108088302 + 0.5 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 294021 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 133.833-64 chr5 89370307 89370646 + 0.5 NA intron (NR_136219, intron 7 of 9) L1MA6|LINE|L1 -466371 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 192.667-27 chr2 206603945 206604355 + 0.5 NA intron (NM_003812, intron 24 of 25) AluSx4|SINE|Alu -40077 NM_001102659 200726 NM_001102659 ENSG00000235118 FAM237A - family with sequence similarity 237 member A protein-coding 140-20 chr13 81037083 81037386 + 0.5 NA intron (NR_125770, intron 2 of 3) L1MA2|LINE|L1 18843 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 131.5-64 chr5 44973923 44974283 + 0.5 NA Intergenic Intergenic 165156 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 136.667-111 chr8 145044642 145045237 + 0.5 NA Intergenic L1MCa|LINE|L1 -7528 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 130.5-49 chr21 16500315 16500642 + 0.5 NA intron (NR_136546, intron 2 of 2) intron (NR_136546, intron 2 of 2) -35094 NR_136547 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 150.5-46 chr21 28987682 28988137 + 0.5 NA intron (NM_015565, intron 1 of 29) AluSx3|SINE|Alu 4968 NM_015565 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 122.5-27 chr13 103905316 103905655 + 0.5 NA Intergenic L1ME3A|LINE|L1 480285 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 119.333-10 chr10 21141761 21142252 + 0.5 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -31984 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 123-55 chr20 34650793 34651105 + 0.5 NA intron (NM_080476, intron 2 of 11) AluSx|SINE|Alu 26336 NM_080476 128869 Hs.253319 NM_080476 ENSG00000101464 PIGU CDC91L1|GAB1 phosphatidylinositol glycan anchor biosynthesis class U protein-coding 194.833-2 chr1 221849701 221850250 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -9309 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 170.5-56 chr5 41200939 41201361 + 0.5 NA intron (NM_000065, intron 3 of 17) Tigger4b|DNA|TcMar-Tigger 12382 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 126-46 chr2 187478652 187479036 + 0.5 NA intron (NM_001318941, intron 7 of 7) intron (NM_001318941, intron 7 of 7) -30592 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 125.833-7 chr10 16075780 16076097 + 0.5 NA Intergenic Intergenic -215405 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 119.167-48 chr2 209001827 209002271 + 0.5 NA Intergenic L1MC5a|LINE|L1 -421998 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 152.5-62 chr7 90877007 90877471 + 0.5 NA intron (NM_012395, intron 5 of 13) intron (NM_012395, intron 5 of 13) 167423 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 142.333-54 chr2 81679684 81680327 + 0.5 NA Intergenic Intergenic -213059 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 125.167-11 chr10 60032689 60033092 + 0.5 NA intron (NM_001204403, intron 43 of 43) intron (NM_001204403, intron 43 of 43) -71977 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 120-39 chr15 71480364 71480728 + 0.5 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -66690 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 137.5-19 chr11 15279413 15279821 + 0.5 NA Intergenic Intergenic 130515 NM_001278315 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 171.5-55 chr6 88120610 88121213 + 0.5 NA Intergenic Intergenic 24426 NM_033181 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 182-45 chr5 147331423 147331966 + 0.5 NA intron (NM_001112724, intron 5 of 12) MLT1C|LTR|ERVL-MaLR 96668 NM_001287740 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 130.667-11 chr11 42185044 42185374 + 0.5 NA Intergenic MIRb|SINE|MIR 68481 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 184.833-37 chr8 115630301 115630920 + 0.5 NA intron (NM_014112, intron 1 of 6) intron (NM_014112, intron 1 of 6) 37403 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 139.167-17 chr13 60429169 60429655 + 0.5 NA intron (NM_001146070, intron 1 of 13) intron (NM_001146070, intron 1 of 13) 32192 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 117.167-87 chr7 96246568 96246968 + 0.5 NA intron (NM_001160210, intron 3 of 17) intron (NM_001160210, intron 3 of 17) -27012 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 113.833-42 chr2 165894171 165894689 + 0.5 NA intron (NM_024753, intron 22 of 28) intron (NM_024753, intron 22 of 28) -22489 NR_045375 100506124 Hs.709870 NR_045375 LOC100506124 - uncharacterized LOC100506124 ncRNA 150.333-20 chr11 40824318 40824668 + 0.5 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -531363 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 162-40 chr20 11527237 11527755 + 0.5 NA Intergenic AluSq2|SINE|Alu -254113 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 119.167-88 chr7 8646047 8646356 + 0.5 NA intron (NM_152745, intron 2 of 2) L1ME3E|LINE|L1 212592 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 146.167-47 chr4 124645049 124645537 + 0.5 NA Intergenic Intergenic 67439 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 172.167-11 chr12 44930912 44931371 + 0.5 NA Intergenic Intergenic -17213 NM_001145110 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 181.667-41 chr3 173642065 173642778 + 0.5 NA intron (NM_001365928, intron 3 of 6) L1ME1|LINE|L1 57987 NM_001365933 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 113.667-5 chr1 155355091 155355401 + 0.5 NA intron (NM_018489, intron 15 of 27) AluSx1|SINE|Alu -8801 NR_030282 693140 NR_030282 ENSG00000283701 MIR555 MIRN555|hsa-mir-555 microRNA 555 ncRNA 140.667-55 chr3 101565085 101565524 + 0.5 NA exon (NM_017819, exon 2 of 2) exon (NM_017819, exon 2 of 2) 3436 NM_017819 54931 Hs.594839 NM_017819 ENSG00000174173 TRMT10C COXPD30|HNYA|MRPP1|RG9MTD1 tRNA methyltransferase 10C, mitochondrial RNase P subunit protein-coding 171.167-33 chr21 26041681 26042341 + 0.5 NA intron (NM_001136131, intron 5 of 15) intron (NM_001136131, intron 5 of 15) 98379 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 137-91 chr7 140134748 140135210 + 0.5 NA intron (NM_030647, intron 2 of 19) intron (NM_030647, intron 2 of 19) 42004 NM_030647 80853 Hs.308710 NM_030647 ENSG00000006459 KDM7A JHDM1D lysine demethylase 7A protein-coding 260.833-4 chr11 29158778 29159408 + 0.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR -435320 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 156.667-32 chr14 65264544 65265134 + 0.5 NA Intergenic AluSg7|SINE|Alu -42492 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 138.667-65 chr4 57786176 57786550 + 0.5 NA Intergenic Intergenic 360491 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 134.333-72 chr21 22801964 22802433 + 0.5 NA Intergenic L1ME3A|LINE|L1 -277086 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 144.667-2 chr1 76409179 76409688 + 0.5 NA intron (NM_001349111, intron 3 of 5) intron (NM_001349111, intron 3 of 5) 334687 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 153.167-3 chr1 102021459 102021955 + 0.5 NA Intergenic L1MEf|LINE|L1 -24473 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 132.833-40 chr20 32328688 32329142 + 0.5 NA intron (NM_004798, intron 7 of 8) (TTAAA)n|Simple_repeat|Simple_repeat -29429 NM_001164603 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 133.333-95 chr4 164820587 164820950 + 0.5 NA Intergenic Intergenic -56410 NM_001297550 100506013 Hs.105196 NM_001297550 ENSG00000248329 APELA ELA|Ende|tdl apelin receptor early endogenous ligand protein-coding 134.167-77 chr8 32526708 32527188 + 0.5 NA intron (NM_013962, intron 1 of 4) L2a|LINE|L2 -21262 NM_001160005 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 150-39 chr2 106086590 106087044 + 0.5 NA Intergenic L1MDa|LINE|L1 21129 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 162-8 chr1 207329002 207329499 + 0.5 NA intron (NM_001114752, intron 5 of 10) MER115|DNA|hAT-Tip100 7572 NM_001300904 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 138.333-14 chr10 12010711 12011049 + 0.5 NA intron (NM_080599, intron 4 of 21) L1MEc|LINE|L1 31929 NM_015542 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense mediated mRNA decay protein-coding 129.5-44 chr2 76911063 76911450 + 0.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -74709 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 135.667-97 chr6 55519358 55519709 + 0.5 NA intron (NM_001287746, intron 4 of 9) intron (NM_001287746, intron 4 of 9) 59681 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 152.5-36 chr3 72104718 72105388 + 0.5 NA Intergenic LTR82A|LTR|ERVL -4598 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 155.333-78 chr4 129739504 129739903 + 0.5 NA intron (NR_110753, intron 3 of 4) intron (NR_110753, intron 3 of 4) 31775 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 149.167-13 chr12 53406150 53406784 + 0.5 NA intron (NM_003109, intron 3 of 5) intron (NM_003109, intron 3 of 5) -17388 NM_001164690 269 Hs.659889 NM_020547 ENSG00000135409 AMHR2 AMHR|MISR2|MISRII|MRII anti-Mullerian hormone receptor type 2 protein-coding 116.667-111 chr9 26902282 26902625 + 0.5 NA TTS (NM_001031689) TTS (NM_001031689) -9625 NM_001167575 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 157.833 chr1 31233633 31234185 + 0.5 NA intron (NM_024522, intron 1 of 6) MIRc|SINE|MIR 5978 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C sodium/potassium transporting ATPase interacting 1 protein-coding 138.667-25 chr13 77742186 77742558 + 0.5 NA intron (NM_144595, intron 1 of 5) intron (NM_144595, intron 1 of 5) 1153 NM_001242870 122060 Hs.349955 NM_144595 ENSG00000139737 SLAIN1 C13orf32 SLAIN motif family member 1 protein-coding 140.5-8 chr10 78007598 78007882 + 0.5 NA exon (NM_007055, exon 15 of 31) exon (NM_007055, exon 15 of 31) 21775 NM_007055 11128 Hs.436896 NM_007055 ENSG00000148606 POLR3A ADDH|HLD7|RPC1|RPC155|WDRTS|hRPC155 RNA polymerase III subunit A protein-coding 270.167-14 chr7 86144373 86145000 + 0.5 NA Intergenic Intergenic -499223 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 147.333-30 chr15 71486249 71486672 + 0.5 NA intron (NM_024817, intron 6 of 16) MIRb|SINE|MIR -60776 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 182.167 chr1 14585239 14585745 + 0.5 NA Intergenic Intergenic -13193 NM_001370230 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 118.167-34 chr2 169323861 169324238 + 0.5 NA intron (NM_004525, intron 1 of 78) intron (NM_004525, intron 1 of 78) 38485 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 147.167-56 chr7 74679607 74679973 + 0.5 NA intron (NM_001163636, intron 1 of 33) intron (NM_001163636, intron 1 of 33) 22072 NM_001518 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 142.167-32 chr18 8186125 8186609 + 0.5 NA intron (NM_002845, intron 14 of 30) intron (NM_002845, intron 14 of 30) 180667 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 169.333-52 chr4 40233815 40234456 + 0.5 NA intron (NM_001278360, intron 2 of 3) MamTip3|DNA|hAT-Tip100 37104 NM_004310 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 118.833-17 chr12 131969752 131970112 + 0.5 NA intron (NM_015409, intron 2 of 52) AluSx|SINE|Alu 19990 NM_015409 57634 Hs.723478 NM_015409 ENSG00000183495 EP400 CAGH32|P400|TNRC12 E1A binding protein p400 protein-coding 155.5-60 chr8 123287227 123287722 + 0.5 NA Intergenic Intergenic -11933 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 166.333-45 chr2 218443513 218444146 + 0.5 NA intron (NM_007127, intron 19 of 19) AluSx|SINE|Alu 24706 NM_007127 7429 Hs.654595 NM_007127 ENSG00000127831 VIL1 D2S1471|VIL villin 1 protein-coding 141.333-66 chr4 41496352 41496664 + 0.5 NA intron (NM_001289122, intron 2 of 25) intron (NM_001289122, intron 2 of 25) -41649 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 117.667-36 chr12 122509554 122509976 + 0.5 NA intron (NR_036434, intron 8 of 10) intron (NR_036434, intron 8 of 10) -8833 NM_001350935 55596 Hs.37706 NM_017612 ENSG00000033030 ZCCHC8 - zinc finger CCHC-type containing 8 protein-coding 114.334-2 chr8 129435241 129435824 + 0.5 NA intron (NR_130920, intron 1 of 3) MLT1D-int|LTR|ERVL-MaLR 48610 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 170.667-27 chr17 40794637 40795019 + 0.5 NA intron (NM_181535, intron 5 of 7) intron (NM_181535, intron 5 of 7) 5131 NM_181535 162605 Hs.59736 NM_181535 ENSG00000173908 KRT28 K25IRS4|KRT25D keratin 28 protein-coding 138.5-22 chr14 28396553 28396909 + 0.5 NA Intergenic L1M4|LINE|L1 368588 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 118.667-57 chr2 14161558 14162074 + 0.5 NA Intergenic Intergenic 239142 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 252.167 chr1 170717860 170718624 + 0.5 NA intron (NM_022716, intron 1 of 3) intron (NM_022716, intron 1 of 3) 54111 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 123-42 chr2 53638021 53638541 + 0.5 NA Intergenic AluSx1|SINE|Alu -129502 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 128.333-43 chr15 97062792 97063149 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 279535 NR_158223 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 125.667-91 chr5 7005428 7005899 + 0.5 NA Intergenic Intergenic -177742 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 149.333-50 chr2 83697313 83697652 + 0.5 NA Intergenic Intergenic 174668 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 126.167-31 chr17 48952211 48952691 + 0.5 NA Intergenic AluJo|SINE|Alu -7609 NR_133679 11267 Hs.127249 NM_007241 ENSG00000159210 SNF8 Dot3|EAP30|VPS22 SNF8 subunit of ESCRT-II protein-coding 183.667-65 chr5 181262936 181263746 + 0.5 NA intron (NR_102762, intron 1 of 2) AluJo|SINE|Alu 2129 NR_102761 100507602 Hs.126768 NR_102759 ENSG00000248275 TRIM52-AS1 - TRIM52 antisense RNA 1 (head to head) ncRNA 185.833-28 chr5 4614517 4615040 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -158703 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 207.833-31 chr6 36446462 36447010 + 0.5 NA intron (NR_104481, intron 1 of 3) intron (NR_104481, intron 1 of 3) 3736 NM_001286579 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 117.5-10 chr11 118685827 118686129 + 0.5 NA Intergenic AluSx|SINE|Alu -6328 NM_007180 11181 Hs.129712 NM_007180 ENSG00000118094 TREH TRE|TREA|TREHD trehalase protein-coding 147.667-30 chr18 79895894 79896251 + 0.5 NA intron (NM_012283, intron 1 of 1) AluSx|SINE|Alu 32404 NM_012283 26251 Hs.247905 NM_012283 ENSG00000178342 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding 124.5-51 chr4 80966174 80966605 + 0.5 NA Intergenic L1MC4|LINE|L1 -64319 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 135.5-38 chr18 2619262 2619710 + 0.5 NA Intergenic MER5A1|DNA|hAT-Charlie 35909 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox 3 pseudogene 2 pseudo 117.833-36 chr17 62637518 62637802 + 0.5 NA intron (NM_006039, intron 1 of 29) intron (NM_006039, intron 1 of 29) 9990 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 144.667-16 chr10 85929048 85929502 + 0.5 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 335513 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 146.167-66 chr7 38146970 38147546 + 0.5 NA Intergenic L1M1|LINE|L1 -30987 NM_001363347 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 130.667-78 chr5 127057376 127057742 + 0.5 NA intron (NM_001164479, intron 3 of 4) Tigger17a|DNA|TcMar-Tigger 15933 NM_001164479 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 147.5-56 chr20 63996677 63996997 + 0.5 NA intron (NM_012469, intron 6 of 20) AluJr|SINE|Alu 15705 NM_012469 24148 Hs.31334 NM_012469 ENSG00000101161 PRPF6 ANT-1|ANT1|C20orf14|Prp6|RP60|SNRNP102|TOM|U5-102K|hPrp6 pre-mRNA processing factor 6 protein-coding 123.667-56 chr2 167465934 167466202 + 0.5 NA Intergenic Intergenic 278696 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 148.667-58 chr5 11091253 11091689 + 0.5 NA intron (NM_001364128, intron 12 of 19) L1MEc|LINE|L1 -330237 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 138.667-88 chr6 159406336 159406721 + 0.5 NA Intergenic Intergenic 22997 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 175.833-30 chr22 34805832 34806402 + 0.5 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 191799 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 114.167-96 chr8 118439263 118439666 + 0.5 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -181537 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 138.167-70 chr7 13364851 13365326 + 0.5 NA Intergenic L1ME3A|LINE|L1 621426 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 236-15 chr3 29819490 29820371 + 0.5 NA intron (NM_001003792, intron 6 of 13) AluSz6|SINE|Alu 114226 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 141.167-9 chr10 63543481 63543825 + 0.5 NA intron (NM_001001330, intron 1 of 7) intron (NM_001001330, intron 1 of 7) -21763 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 126.833-37 chr19 52686170 52686465 + 0.5 NA intron (NM_001348019, intron 1 of 6) intron (NM_001348019, intron 1 of 6) 4264 NM_001277949 55769 Hs.467210 NM_018300 ENSG00000167766 ZNF83 HPF1|ZNF816B zinc finger protein 83 protein-coding 132.167-28 chr17 53907436 53907842 + 0.5 NA Intergenic Intergenic 84712 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 127.667-6 chr1 244165960 244166241 + 0.5 NA Intergenic L2a|LINE|L2 112895 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 114-23 chr11 17171463 17171986 + 0.5 NA intron (NM_002645, intron 1 of 32) L1ME2z|LINE|L1 36262 NM_001321380 5286 Hs.175343 NM_002645 ENSG00000011405 PIK3C2A CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 119.667-23 chr15 67925157 67925463 + 0.5 NA Intergenic Intergenic -85265 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 155.333-32 chr14 87360856 87361348 + 0.5 NA Intergenic Intergenic 294192 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 127.333 chr1 56209074 56209668 + 0.5 NA Intergenic L1MA9|LINE|L1 -205592 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 157.333-40 chr2 151206905 151207572 + 0.5 NA Intergenic Intergenic 54625 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 157.5-33 chr2 110158627 110159043 + 0.5 NA intron (NM_207181, intron 11 of 19) L1M5|LINE|L1 -42269 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 144.5-46 chr2 102223674 102224047 + 0.5 NA intron (NM_001351447, intron 6 of 9) intron (NM_001351447, intron 6 of 9) 36546 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 151.167-22 chr17 69686361 69686845 + 0.5 NA intron (NR_109972, intron 3 of 4) L1PA15|LINE|L1 92616 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 144.5-48 chr2 127777588 127778037 + 0.5 NA intron (NM_001006622, intron 1 of 5) AluJo|SINE|Alu 33359 NM_018383 55339 Hs.554831 NM_018383 ENSG00000136709 WDR33 NET14|WDC146 WD repeat domain 33 protein-coding 130-69 chr3 87568931 87569571 + 0.5 NA Intergenic Intergenic -223455 NM_001322208 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 155.667-89 chrX 94450278 94450716 + 0.5 NA Intergenic Intergenic 612729 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 138-86 chr5 94995122 94995583 + 0.5 NA intron (NM_001297777, intron 2 of 19) intron (NM_001297777, intron 2 of 19) 86514 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 132.833-29 chr2 21572130 21572469 + 0.5 NA Intergenic L2a|LINE|L2 138353 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 233.5-3 chr1 212500249 212500817 + 0.5 NA Intergenic Intergenic -45161 NR_125985 101929565 NR_125985 ENSG00000228067 LINC01740 - long intergenic non-protein coding RNA 1740 ncRNA 188.333-50 chr6 6388436 6388937 + 0.5 NA intron (NR_026970, intron 4 of 7) intron (NR_026970, intron 4 of 7) -67995 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 213.333-6 chr10 67124582 67125123 + 0.5 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 112586 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 221.167-22 chr6 40675330 40676038 + 0.5 NA Intergenic Intergenic -88320 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 163.5-24 chr16 26912752 26913402 + 0.5 NA Intergenic Intergenic -153850 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 206-35 chr7 53891317 53891935 + 0.5 NA Intergenic L2|LINE|L2 -79695 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 156.167-15 chr11 113690307 113690874 + 0.5 NA intron (NM_001288752, intron 8 of 10) intron (NM_001288752, intron 8 of 10) 15718 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 157.833-16 chr12 45503207 45503609 + 0.5 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 210718 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 129-87 chr6 68886348 68886769 + 0.5 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 251276 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 129.833-10 chr10 118161225 118161785 + 0.5 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -114564 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 161.667-10 chr1 190782436 190783037 + 0.5 NA intron (NR_033922, intron 2 of 4) L1PA16|LINE|L1 157846 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 187.833-19 chr17 43786528 43787104 + 0.5 NA 3' UTR (NM_001353400, exon 5 of 5) 3' UTR (NM_001353400, exon 5 of 5) 6381 NM_001353400 284067 Hs.252707 NM_001136483 ENSG00000231256 CFAP97D1 C17orf105 CFAP97 domain containing 1 protein-coding 159-38 chr2 8275889 8276476 + 0.5 NA intron (NR_152741, intron 8 of 9) THE1B|LTR|ERVL-MaLR 52237 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 136-73 chr6 120160320 120160707 + 0.5 NA Intergenic Intergenic 145334 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 114.333-45 chr16 57950687 57951065 + 0.5 NA intron (NM_001297, intron 12 of 32) intron (NM_001297, intron 12 of 32) 20252 NM_001297 1258 Hs.147062 NM_001297 ENSG00000070729 CNGB1 CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45 cyclic nucleotide gated channel beta 1 protein-coding 131.333-52 chr2 137456777 137457249 + 0.5 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 470919 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 191.333-3 chr11 14082885 14083420 + 0.5 NA intron (NM_006108, intron 5 of 15) Charlie1|DNA|hAT-Charlie 120429 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 170-68 chr7 27826910 27827408 + 0.5 NA intron (NM_001362794, intron 15 of 16) AluSz|SINE|Alu 87064 NM_001079864 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 186.167-12 chr12 29369756 29370291 + 0.5 NA intron (NM_016570, intron 3 of 13) intron (NM_016570, intron 3 of 13) 11149 NM_016570 51290 Hs.339453 NM_016570 ENSG00000087502 ERGIC2 CDA14|Erv41|PTX1|cd002 ERGIC and golgi 2 protein-coding 179.333-47 chr6 15537398 15537897 + 0.5 NA intron (NR_036448, intron 8 of 9) THE1D|LTR|ERVL-MaLR 125381 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 142.333-18 chr11 20567576 20567929 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -31648 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 123.667-21 chr11 126291697 126291975 + 0.5 NA intron (NM_001039661, intron 4 of 5) intron (NM_001039661, intron 4 of 5) 8749 NM_001039661 114609 Hs.537126 NM_052887 ENSG00000150455 TIRAP BACTS1|Mal|MyD88-2|wyatt TIR domain containing adaptor protein protein-coding 155.333-62 chr3 45713748 45714369 + 0.5 NA exon (NM_014016, exon 7 of 20) exon (NM_014016, exon 7 of 20) 24662 NM_001319072 22908 Hs.156509 NM_014016 ENSG00000211456 SACM1L SAC1 SAC1 like phosphatidylinositide phosphatase protein-coding 128.667-96 chr5 114655218 114655725 + 0.5 NA intron (NR_130785, intron 3 of 12) intron (NR_130785, intron 3 of 12) 79430 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 133.333-23 chr11 47027646 47028237 + 0.5 NA intron (NR_103472, intron 2 of 7) AluY|SINE|Alu 91180 NR_103472 79096 Hs.368296 NM_024113 ENSG00000149179 C11orf49 - chromosome 11 open reading frame 49 protein-coding 160.167-42 chr3 51824611 51825043 + 0.5 NA Intergenic HAL1|LINE|L1 -2056 NM_001085479 401067 Hs.729443 NM_001085479 ENSG00000229972 IQCF3 - IQ motif containing F3 protein-coding 119.833-90 chr8 140253348 140253652 + 0.5 NA intron (NM_001160372, intron 15 of 22) AluSz|SINE|Alu -152965 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 131.167-77 chr7 108550793 108551067 + 0.5 NA Intergenic HAL1|LINE|L1 18523 NM_182529 168451 Hs.707689 NM_182529 ENSG00000177683 THAP5 - THAP domain containing 5 protein-coding 122.167-32 chr19 28301974 28302536 + 0.5 NA Intergenic Intergenic -304433 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 163.5-68 chr7 38200729 38201288 + 0.5 NA intron (NM_001363344, intron 2 of 8) intron (NM_001363344, intron 2 of 8) 22763 NM_001363340 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 138.5-52 chr3 151981996 151982372 + 0.5 NA Intergenic L1MB3|LINE|L1 -54009 NR_110202 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 140.167-28 chr18 1654076 1654455 + 0.5 NA Intergenic Intergenic -294636 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 173-2 chr1 11681707 11682129 + 0.5 NA promoter-TSS (NM_006341) promoter-TSS (NM_006341) -770 NM_006341 10459 Hs.19400 NM_006341 ENSG00000116670 MAD2L2 FANCV|MAD2B|POLZ2|REV7 mitotic arrest deficient 2 like 2 protein-coding 124.333-77 chr5 38201622 38202032 + 0.5 NA Intergenic LTR33A|LTR|ERVL 53347 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 124.333-79 chr5 40739643 40739905 + 0.5 NA intron (NM_012382, intron 2 of 4) MSTA|LTR|ERVL-MaLR 16187 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 154.833-5 chr1 177006619 177007177 + 0.5 NA intron (NM_207108, intron 8 of 21) intron (NM_207108, intron 8 of 21) 22547 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 143-24 chr15 67364978 67365479 + 0.5 NA intron (NM_001031715, intron 8 of 20) AluJb|SINE|Alu -110030 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 171.333-59 chr5 158959260 158959782 + 0.5 NA intron (NM_182708, intron 5 of 14) AluSx|SINE|Alu 138435 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 117-98 chr6 65145291 65145718 + 0.5 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -155914 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 135.833-23 chr17 49012248 49012750 + 0.5 NA intron (NM_001160423, intron 2 of 12) intron (NM_001160423, intron 2 of 12) 15114 NM_001160423 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 129-77 chr5 126642105 126642390 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 10542 NM_207408 389320 Hs.177983 NM_207408 ENSG00000196900 TEX43 C5orf48|Tseg7 testis expressed 43 protein-coding 135.833-50 chr3 134117692 134118025 + 0.5 NA Intergenic L1PB4|LINE|L1 -60210 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 119-33 chr15 25015241 25015539 + 0.5 NA intron (NR_146177, intron 20 of 147) intron (NR_146177, intron 20 of 147) -16483 NR_146168 100506965 Hs.592473 NR_146168 PWAR6 HBT8|PAR-6 Prader Willi/Angelman region RNA 6 ncRNA 221-16 chr19 46130166 46130736 + 0.5 NA Intergenic Intergenic -5763 NM_207393 388555 Hs.365496 NM_207393 ENSG00000188624 IGFL3 UNQ483 IGF like family member 3 protein-coding 122.833-70 chr5 19050087 19050443 + 0.5 NA Intergenic Intergenic 836007 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 145.167-48 chr3 96797050 96797434 + 0.5 NA Intergenic Intergenic -17352 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 194.333-50 chr9 137505650 137506283 + 0.5 NA intron (NM_001098537, intron 13 of 34) intron (NM_001098537, intron 13 of 34) 44436 NM_152286 375775 Hs.294147 NM_152286 ENSG00000130653 PNPLA7 C9orf111|NTE-R1|NTEL1 patatin like phospholipase domain containing 7 protein-coding 116-5 chr1 177631717 177632202 + 0.5 NA Intergenic Intergenic -68565 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 147.5-42 chr2 22916285 22916664 + 0.5 NA Intergenic Intergenic 379995 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 171.5-25 chr17 67597891 67598445 + 0.5 NA intron (NM_181671, intron 5 of 9) AluSc5|SINE|Alu -119665 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 136.667-6 chr1 163782410 163782906 + 0.5 NA Intergenic L1MB8|LINE|L1 -359467 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 143.667-13 chr1 182989947 182990264 + 0.5 NA Intergenic Intergenic -33315 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 124.5-22 chr14 72169931 72170259 + 0.5 NA intron (NM_001370288, intron 2 of 16) MLT1J2|LTR|ERVL-MaLR 236568 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 231-29 chr8 83740255 83740817 + 0.5 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 336778 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 146.167-9 chr11 112355460 112355755 + 0.5 NA intron (NR_126004, intron 2 of 3) intron (NR_126004, intron 2 of 3) 84858 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 180.667-50 chr3 140157323 140157862 + 0.5 NA intron (NM_022131, intron 1 of 16) L1PA16|LINE|L1 222407 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 178-73 chrX 50871241 50871690 + 0.5 NA Intergenic MIRb|SINE|MIR -39270 NM_005448 9210 Hs.532692 NM_005448 ENSG00000130385 BMP15 GDF9B|ODG2|POF4 bone morphogenetic protein 15 protein-coding 190.167-27 chr2 184626377 184626821 + 0.5 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 28070 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 136.667-117 chrM 12929 13307 + 0.5 NA Intergenic Intergenic -5604 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 260.833-6 chr12 6372170 6372884 + 0.5 NA intron (NM_001038, intron 2 of 12) intron (NM_001038, intron 2 of 12) -2633 NM_001270987 4055 Hs.1116 NM_002342 ENSG00000111321 LTBR D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3 lymphotoxin beta receptor protein-coding 141.167-29 chr15 78969820 78970102 + 0.5 NA intron (NM_001145648, intron 26 of 26) intron (NM_001145648, intron 26 of 26) -8928 NR_148998 100129540 Hs.459035 NR_148998 ENSG00000177699 LOC100129540 - uncharacterized LOC100129540 ncRNA 179-35 chr3 77095350 77095862 + 0.5 NA intron (NM_001290039, intron 1 of 26) intron (NM_001290039, intron 1 of 26) -2406 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 161.333-8 chr10 108415388 108415749 + 0.5 NA Intergenic Intergenic -346275 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 158.833-16 chr12 38454708 38455319 + 0.5 NA Intergenic Intergenic 138239 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 191-18 chr17 69109423 69109930 + 0.5 NA intron (NM_080284, intron 17 of 38) MER44C|DNA|TcMar-Tigger -10044 NR_039750 100616316 NR_039750 ENSG00000283385 MIR4524A MIR4524|hsa-mir-4524a|mir-4524a microRNA 4524a ncRNA 156.5-12 chr10 58629089 58629695 + 0.5 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -85623 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 152.167-57 chr4 179841355 179841775 + 0.5 NA Intergenic L2c|LINE|L2 1317584 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 155.667-15 chr10 64213588 64214015 + 0.5 NA Intergenic Intergenic -611727 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 159.667-69 chr5 45165304 45165740 + 0.5 NA Intergenic Intergenic 356575 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 141.833-39 chr6 74045638 74045955 + 0.5 NA Intergenic AluY|SINE|Alu -23655 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 122.5-26 chr13 32114501 32114860 + 0.5 NA intron (NM_023037, intron 3 of 60) intron (NM_023037, intron 3 of 60) 82906 NM_023037 10129 Hs.507669 NM_023037 ENSG00000073910 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 FRY microtubule binding protein protein-coding 143.167-29 chr2 34269723 34270037 + 0.5 NA intron (NR_126403, intron 4 of 5) L1M5|LINE|L1 202654 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 116.167-66 chr6 67700083 67700579 + 0.5 NA Intergenic Intergenic -355020 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 164.667-66 chr6 129454890 129455514 + 0.5 NA intron (NM_000426, intron 47 of 64) FAM|SINE|Alu 254975 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 136.333-24 chr12 92134386 92134869 + 0.5 NA intron (NR_132341, intron 1 of 4) intron (NR_132341, intron 1 of 4) 7086 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 163.167-47 chr8 107026073 107026708 + 0.5 NA Intergenic Intergenic -256146 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 121.5-40 chr15 42358373 42358749 + 0.5 NA promoter-TSS (NM_173087) promoter-TSS (NM_173087) -939 NM_024344 825 Hs.143261 NM_000070 ENSG00000092529 CAPN3 CANP3|CANPL3|LGMD2|LGMD2A|LGMDD4|LGMDR1|nCL-1|p94 calpain 3 protein-coding 152.333-42 chr3 46146134 46146672 + 0.5 NA Intergenic Intergenic 61910 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 157-17 chr11 94817710 94818109 + 0.5 NA intron (NM_130847, intron 3 of 12) MER4-int|LTR|ERV1 49553 NM_001301007 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 141-95 chr9 134833383 134834006 + 0.5 NA intron (NM_001278074, intron 64 of 65) intron (NM_001278074, intron 64 of 65) 15675 NR_039691 100616333 NR_039691 ENSG00000264744 MIR3689C - microRNA 3689c ncRNA 156.333-35 chr16 7494485 7494797 + 0.5 NA intron (NM_145893, intron 1 of 13) MIRb|SINE|MIR 161796 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 152.5-12 chr14 56634403 56634804 + 0.5 NA intron (NM_017799, intron 13 of 15) AluSq2|SINE|Alu 54805 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 126.167-28 chr16 62578798 62579231 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR -542576 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 134-89 chr5 121009558 121010094 + 0.5 NA Intergenic Intergenic -312724 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 134-35 chr14 32759703 32760016 + 0.5 NA intron (NM_004274, intron 11 of 13) MSTA|LTR|ERVL-MaLR -179020 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 116.667-55 chr2 72169338 72169654 + 0.5 NA Intergenic MER46C|DNA|TcMar-Tigger -21634 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 137.5-29 chr14 55853817 55854187 + 0.5 NA Intergenic AluJb|SINE|Alu -57328 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 161.667-16 chr10 17559552 17560143 + 0.5 NA Intergenic AluSz|SINE|Alu 57527 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 149.167-39 chr3 4986350 4986780 + 0.5 NA Intergenic Intergenic -6604 NR_125915 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 155-64 chr5 53621045 53621524 + 0.5 NA intron (NR_134474, intron 3 of 5) L1ME4a|LINE|L1 60645 NR_134473 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 143.667-51 chr18 41237868 41238273 + 0.5 NA Intergenic L1PA8A|LINE|L1 282607 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 138.5-35 chr18 11598682 11599093 + 0.5 NA Intergenic MER4B|LTR|ERV1 -10671 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 187-33 chr5 25436416 25436920 + 0.5 NA Intergenic L1MC1|LINE|L1 245715 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 131.5-19 chr12 39047031 39047414 + 0.5 NA Intergenic HAL1ME|LINE|L1 -141631 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 133.333-57 chr2 76514928 76515417 + 0.5 NA Intergenic Intergenic -470793 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 143.667-76 chr4 24364562 24364980 + 0.5 NA intron (NM_001330752, intron 1 of 13) intron (NM_001330752, intron 1 of 13) 108134 NR_148981 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 151.167-46 chr6 11991894 11992501 + 0.5 NA intron (NR_125853, intron 1 of 2) intron (NR_125853, intron 1 of 2) 9047 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 186.5-54 chr5 59550093 59550774 + 0.5 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 36065 NM_001349242 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 165-21 chr15 75229135 75229540 + 0.5 NA exon (NM_001321990, exon 2 of 5) exon (NM_001321990, exon 2 of 5) 353 NM_001321990 105376731 NM_001321990 LOC105376731 - taste receptor cell protein 1-like protein-coding 124.167-52 chr20 14064331 14064687 + 0.5 NA intron (NM_001351663, intron 2 of 17) L2|LINE|L2 68993 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 167.5-42 chr3 108974919 108975260 + 0.5 NA intron (NM_014429, intron 24 of 27) intron (NM_014429, intron 24 of 27) -21210 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 159.833-21 chr14 74624997 74625577 + 0.5 NA Intergenic AluSp|SINE|Alu -13050 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 163.667-5 chr1 158280907 158281299 + 0.5 NA Intergenic L1PA7|LINE|L1 -8820 NM_001765 911 Hs.132448 NM_001765 ENSG00000158481 CD1C BDCA1|CD1|CD1A|R7 CD1c molecule protein-coding 156.5-71 chr5 115242486 115243057 + 0.5 NA intron (NM_005023, intron 2 of 8) AluSx|SINE|Alu 20106 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 130.167-8 chr10 120090915 120091240 + 0.5 NA Intergenic MER58B|DNA|hAT-Charlie 132564 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 113.833-52 chr3 20248014 20248446 + 0.5 NA Intergenic L1PA16|LINE|L1 -61997 NM_001012411 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 113.167-58 chr4 114321387 114321692 + 0.5 NA Intergenic Intergenic -276863 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 116.5-54 chr3 98636007 98636338 + 0.5 NA Intergenic LTR45C|LTR|ERV1 -42561 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 176.667-18 chr11 112028473 112029121 + 0.5 NA exon (NM_001931, exon 4 of 14) exon (NM_001931, exon 4 of 14) 3983 NM_001931 1737 Hs.335551 NM_001931 ENSG00000150768 DLAT DLTA|E2|PDC-E2|PDCE2 dihydrolipoamide S-acetyltransferase protein-coding 161.333-24 chr14 78361415 78361881 + 0.5 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -42071 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 136.333-7 chr10 14612924 14613479 + 0.5 NA intron (NM_001282695, intron 2 of 5) AluSz|SINE|Alu -8800 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 169.167-9 chr13 24801345 24801718 + 0.5 NA intron (NM_031277, intron 13 of 35) AluJb|SINE|Alu 37362 NM_031277 56163 Hs.97464 NM_031277 ENSG00000132972 RNF17 Mmip-2|SPATA23|TDRD4 ring finger protein 17 protein-coding 123.333-41 chr15 61559227 61559689 + 0.5 NA Intergenic Intergenic -170460 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 116.833-58 chr7 11109289 11109577 + 0.5 NA non-coding (NR_033435, exon 16 of 16) non-coding (NR_033435, exon 16 of 16) 135561 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 213.833 chr1 78176543 78177195 + 0.5 NA Intergenic LTR79|LTR|ERVL -52730 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 179.833-25 chr4 99758944 99759364 + 0.5 NA Intergenic Intergenic -57673 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 135.333-33 chr18 596315 596821 + 0.5 NA promoter-TSS (NM_014410) promoter-TSS (NM_014410) -430 NM_014410 27098 Hs.732341 NM_014410 ENSG00000079101 CLUL1 RA337M clusterin like 1 protein-coding 134.667-68 chr4 33746538 33746940 + 0.5 NA Intergenic Intergenic 293154 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 169.167-12 chr14 45874925 45875361 + 0.5 NA Intergenic LTR64|LTR|ERV1 -159541 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 151.5-7 chr1 189783402 189784039 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie 692290 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 129.5-18 chr12 10503677 10503989 + 0.5 NA Intergenic L1M3|LINE|L1 -2060 NM_001357734 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 145.5-36 chr2 85073201 85073672 + 0.5 NA Intergenic L1MB5|LINE|L1 -6089 NR_146453 100996478 Hs.434398 NR_146453 ENSG00000260840 LINC01964 - long intergenic non-protein coding RNA 1964 ncRNA 134.5-26 chr13 100405527 100405839 + 0.5 NA intron (NR_148027, intron 20 of 23) MER61-int|LTR|ERV1 75332 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 153.5-79 chr8 129273945 129274311 + 0.5 NA Intergenic L2c|LINE|L2 -32888 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 161.5-8 chr11 94357874 94358621 + 0.5 NA Intergenic Intergenic 43172 NM_001330345 10888 Hs.272385 NM_016540 ENSG00000123901 GPR83 GIR|GPR72 G protein-coupled receptor 83 protein-coding 116.333-6 chr1 78696095 78696504 + 0.5 NA Intergenic L1PA12|LINE|L1 46468 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 137-47 chr19 28193252 28193703 + 0.5 NA Intergenic LTR16C|LTR|ERVL -399537 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 128.833-21 chr11 75080006 75080342 + 0.5 NA Intergenic Intergenic 16716 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 114.333-125 chr8 129626506 129626996 + 0.5 NA intron (NR_130917, intron 1 of 3) L1ME4b|LINE|L1 -51733 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 116.667-78 chr3 117858484 117859056 + 0.5 NA Intergenic Intergenic -167845 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 197.5-51 chr8 21944066 21944575 + 0.5 NA intron (NM_015024, intron 1 of 27) AluSx|SINE|Alu 24658 NR_156173 23039 Hs.172685 NM_015024 ENSG00000130227 XPO7 EXP7|RANBP16 exportin 7 protein-coding 205-33 chr5 2324445 2324881 + 0.5 NA Intergenic Intergenic -12462 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 210.5-38 chr5 20897060 20897598 + 0.5 NA intron (NR_149120, intron 6 of 11) intron (NR_149120, intron 6 of 11) -281794 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 125.167-16 chr11 72965728 72966087 + 0.5 NA intron (NM_014824, intron 8 of 19) L1ME3D|LINE|L1 151496 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 133-7 chr1 213999468 213999944 + 0.5 NA intron (NM_001270616, intron 2 of 4) intron (NM_001270616, intron 2 of 4) 11173 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 121.833-59 chr5 41101485 41101825 + 0.5 NA Intergenic L1M5|LINE|L1 -30313 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 133.667-80 chr6 62231672 62232119 + 0.5 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 54330 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 129.167-39 chr2 115624433 115624871 + 0.5 NA intron (NM_001321912, intron 6 of 25) MIRb|SINE|MIR 280837 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 140.833-27 chr2 60399753 60400070 + 0.5 NA Intergenic Intergenic -8536 NR_132992 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 168.167-16 chr14 47539396 47539924 + 0.5 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 135294 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 148-63 chr5 11540788 11541232 + 0.5 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 47907 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 155.667-85 chr8 134104706 134105227 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 218470 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 128.333-99 chr5 112281549 112282042 + 0.5 NA intron (NM_001347887, intron 2 of 23) hAT-N1_Mam|DNA|hAT-Tip100? 53512 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 125.833-91 chr8 116751797 116752115 + 0.5 NA intron (NM_003756, intron 1 of 7) MIR|SINE|MIR 3867 NM_003756 8667 Hs.492599 NM_003756 ENSG00000147677 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3 subunit H protein-coding 170-80 chr8 110653831 110654211 + 0.5 NA Intergenic Intergenic 373412 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 183.167-47 chr5 83767804 83768363 + 0.5 NA Intergenic HERV35I-int|LTR|ERV1 -47228 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 187-42 chr7 16062658 16063113 + 0.5 NA Intergenic Intergenic -147601 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 118.333-35 chr15 23704813 23705239 + 0.5 NA Intergenic L1ME1|LINE|L1 -17721 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 246.5-7 chr11 40643415 40644126 + 0.5 NA intron (NM_020929, intron 2 of 4) L1MDa|LINE|L1 -350640 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 151.667-94 chr9 74384228 74384814 + 0.5 NA TTS (NR_121182) TTS (NR_121182) 12990 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 169.833-33 chr7 9414420 9414936 + 0.5 NA Intergenic Intergenic -219592 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 172.167-49 chr9 89239297 89239723 + 0.5 NA Intergenic MIR|SINE|MIR -60692 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 195.5-10 chr11 84901611 84902295 + 0.5 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 21468 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 227.667-22 chr5 13383849 13384421 + 0.5 NA Intergenic L1PA16|LINE|L1 -351249 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 143.667-112 chr9 93546287 93546769 + 0.5 NA intron (NM_001286722, intron 11 of 17) intron (NM_001286722, intron 11 of 17) -30056 NM_005392 5253 Hs.211441 NM_005392 ENSG00000197724 PHF2 CENP-35|GRC5|JHDM1E|KDM7C PHD finger protein 2 protein-coding 209.167-31 chr6 50230418 50230986 + 0.5 NA Intergenic AluY|SINE|Alu -180773 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 138.5-39 chr2 27838443 27838781 + 0.5 NA intron (NM_022128, intron 5 of 7) intron (NM_022128, intron 5 of 7) -50097 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 139.833-31 chr17 67685247 67685722 + 0.5 NA intron (NM_012417, intron 8 of 8) intron (NM_012417, intron 8 of 8) -32349 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 151.833-56 chr8 52627157 52627699 + 0.5 NA intron (NM_001083617, intron 22 of 23) intron (NM_001083617, intron 22 of 23) -61998 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 126.167-87 chr8 52967503 52967953 + 0.5 NA Intergenic Intergenic 27820 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 114.333-60 chr2 12978202 12978546 + 0.5 NA intron (NR_038434, intron 5 of 5) MLT1J2|LTR|ERVL-MaLR 28639 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 146-47 chr22 48873488 48873958 + 0.5 NA intron (NR_038944, intron 1 of 6) L1M5|LINE|L1 6953 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 114.5-26 chr12 59199105 59199426 + 0.5 NA Intergenic Intergenic -278727 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 163.5-59 chr5 44837440 44837855 + 0.5 NA Intergenic Intergenic 28700 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 122.167-61 chr6 124245560 124245913 + 0.5 NA intron (NM_001300737, intron 2 of 7) MIR|SINE|MIR -37269 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 135.333-73 chr7 7387744 7388077 + 0.5 NA intron (NM_001037763, intron 27 of 34) intron (NM_001037763, intron 27 of 34) 132756 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 145.167-64 chr6 119909335 119909848 + 0.5 NA Intergenic Intergenic -105588 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 170.167 chr1 180367000 180367610 + 0.5 NA intron (NM_032360, intron 6 of 7) intron (NM_032360, intron 6 of 7) 71085 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 159.833-13 chr10 68725183 68725595 + 0.5 NA intron (NR_104262, intron 2 of 23) AluSx|SINE|Alu 4150 NM_001282960 55749 Hs.49853 NM_018237 ENSG00000060339 CCAR1 - cell division cycle and apoptosis regulator 1 protein-coding 119.333-46 chr2 11221908 11222211 + 0.5 NA intron (NM_001321643, intron 8 of 32) intron (NM_001321643, intron 8 of 32) 66592 NM_001282711 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 127-14 chr11 37071833 37072164 + 0.5 NA Intergenic Intergenic -473719 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 146.667-17 chr11 77385483 77386001 + 0.5 NA intron (NM_001128620, intron 2 of 15) AluSx1|SINE|Alu -84076 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 187.167-14 chr18 57791833 57792541 + 0.5 NA intron (NM_005603, intron 1 of 27) Tigger8|DNA|TcMar-Tigger 11128 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 120.667-98 chr6 54167437 54167956 + 0.5 NA intron (NM_001281746, intron 8 of 11) L1MEg|LINE|L1 56253 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 145.667-64 chr3 107232436 107232875 + 0.5 NA intron (NR_028303, intron 1 of 3) intron (NR_028303, intron 1 of 3) 7983 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 215.333-55 chrX 96848591 96849156 + 0.5 NA intron (NM_007309, intron 4 of 26) intron (NM_007309, intron 4 of 26) -35035 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 190-46 chr4 54264164 54264784 + 0.5 NA intron (NM_001347829, intron 4 of 22) L2a|LINE|L2 30514 NM_001347830 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 150.333-3 chr1 56511801 56512228 + 0.5 NA exon (NM_003713, exon 5 of 6) exon (NM_003713, exon 5 of 6) 67549 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 123.833-12 chr11 104818331 104818785 + 0.5 NA Intergenic L1MEc|LINE|L1 80112 NR_034061 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 141.333-51 chr2 119945628 119946152 + 0.5 NA intron (NM_002830, intron 16 of 26) L1MB7|LINE|L1 -67187 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 142.667-50 chr2 117168535 117169014 + 0.5 NA Intergenic MER11B|LTR|ERVK -645917 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 138.667-19 chr12 5689321 5689711 + 0.5 NA intron (NM_001278596, intron 15 of 25) intron (NM_001278596, intron 15 of 25) 195384 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 169.333-38 chr2 111134117 111134620 + 0.5 NA intron (NM_138625, intron 3 of 4) L1MD2|LINE|L1 13454 NM_001204108 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 122.167-51 chr4 62251975 62252336 + 0.5 NA Intergenic Intergenic -90390 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 126.833-11 chr10 55832906 55833372 + 0.5 NA Intergenic L1PA16|LINE|L1 -205197 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 183.667-25 chr14 58964766 58965492 + 0.5 NA intron (NR_110547, intron 4 of 5) MER58A|DNA|hAT-Charlie 136841 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 205.5-34 chr4 148827665 148828227 + 0.5 NA Intergenic Intergenic 114432 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 116.333-15 chr10 57226788 57227157 + 0.5 NA Intergenic L1MA4|LINE|L1 77587 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 184.167-22 chr15 58711640 58712085 + 0.5 NA intron (NM_001320570, intron 2 of 14) intron (NM_001320570, intron 2 of 14) -18255 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 218.5-17 chr2 24167417 24168117 + 0.5 NA intron (NM_001145710, intron 10 of 10) LTR78|LTR|ERV1 -7286 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 191.333-23 chr22 32648551 32649006 + 0.5 NA intron (NM_003490, intron 6 of 13) MIRb|SINE|MIR -152038 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 155.333-77 chr4 125880719 125881191 + 0.5 NA Intergenic L1M4c|LINE|L1 373696 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 124.333-62 chr3 78531908 78532354 + 0.5 NA Intergenic Intergenic -483168 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 198.5-18 chr17 71222161 71222703 + 0.5 NA Intergenic Intergenic -20253 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 152.667-21 chr12 47277755 47278272 + 0.5 NA Intergenic Intergenic 29386 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 211-21 chr2 41307047 41307510 + 0.5 NA Intergenic Intergenic -570277 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 365.5-2 chr10 17111222 17112654 + 0.5 NA intron (NM_001081, intron 8 of 66) intron (NM_001081, intron 8 of 66) 17879 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 178-69 chr8 122150081 122150513 + 0.5 NA Intergenic Intergenic 418347 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 253.667-8 chr2 63940838 63941379 + 0.5 NA intron (NM_001005739, intron 11 of 22) intron (NM_001005739, intron 11 of 22) 78320 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 121.5-25 chr11 133070568 133070884 + 0.5 NA intron (NM_001012393, intron 1 of 7) Tigger19a|DNA|TcMar-Tigger -126958 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 135.167-35 chr15 100199290 100199657 + 0.5 NA intron (NM_139057, intron 7 of 21) intron (NM_139057, intron 7 of 21) 142502 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 193.667-48 chr7 48958141 48958900 + 0.5 NA Intergenic LTR41C|LTR|ERVL 33973 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 119.667-59 chr3 38420121 38420458 + 0.5 NA intron (NR_146068, intron 15 of 16) L1MB4|LINE|L1 -33601 NM_001106 93 Hs.174273 NM_001106 ENSG00000114739 ACVR2B ACTRIIB|ActR-IIB|HTX4 activin A receptor type 2B protein-coding 163.5-38 chr20 45184857 45185269 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 10161 NM_002638 5266 Hs.112341 NM_002638 ENSG00000124102 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3 protein-coding 136.5-8 chr1 115682844 115683292 + 0.5 NA intron (NM_001172411, intron 5 of 7) intron (NM_001172411, intron 5 of 7) 40439 NM_001172412 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 138.5-90 chrX 70141564 70141895 + 0.5 NA intron (NM_001370194, intron 2 of 3) MIRc|SINE|MIR 7794 NM_001370194 3476 Hs.496267 NM_001551 ENSG00000089289 IGBP1 ALPHA-4|IBP1 immunoglobulin binding protein 1 protein-coding 141.5-26 chr13 20908691 20909119 + 0.5 NA Intergenic MIRc|SINE|MIR -6131 NM_022459 64328 Hs.507452 NM_022459 ENSG00000132953 XPO4 exp4 exportin 4 protein-coding 119.333-117 chr8 138684312 138684869 + 0.5 NA intron (NM_152888, intron 38 of 64) intron (NM_152888, intron 38 of 64) -186860 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 146.833 chr1 17131432 17131868 + 0.5 NA Intergenic MSTB-int|LTR|ERVL-MaLR -12199 NM_007365 11240 Hs.33455 NM_007365 ENSG00000117115 PADI2 PAD-H19|PAD2|PDI2 peptidyl arginine deiminase 2 protein-coding 115.333-103 chr7 143179941 143180252 + 0.5 NA intron (NM_001130026, intron 8 of 10) L1MD3|LINE|L1 -3323 NM_176881 259285 Hs.553660 NM_176881 ENSG00000236398 TAS2R39 T2R39|T2R57 taste 2 receptor member 39 protein-coding 174.333-52 chr6 23139618 23140074 + 0.5 NA Intergenic Intergenic -421922 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 166.667-52 chr6 134674791 134675219 + 0.5 NA Intergenic L1MA9|LINE|L1 -135000 NR_125856 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 140-64 chr4 181424310 181424676 + 0.5 NA Intergenic ORSL-2b|DNA|hAT-Tip100 -159464 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 124.833-62 chr3 165467490 165467802 + 0.5 NA intron (NR_125764, intron 3 of 5) intron (NR_125764, intron 3 of 5) 260686 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 172.167-18 chr15 71071281 71071744 + 0.5 NA Intergenic L1M5|LINE|L1 -69937 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 119.333-58 chr20 8744721 8745116 + 0.5 NA intron (NM_182734, intron 23 of 32) intron (NM_182734, intron 23 of 32) -86267 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 129-50 chr22 30425387 30425852 + 0.5 NA promoter-TSS (NM_016498) promoter-TSS (NM_016498) -149 NM_001003704 51537 Hs.713636 NM_016498 ENSG00000242114 MTFP1 HSPC242|MTP18 mitochondrial fission process 1 protein-coding 143-66 chr5 85898534 85898955 + 0.5 NA Intergenic L1M1|LINE|L1 -383700 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 124.5-59 chr5 38454521 38455061 + 0.5 NA intron (NM_182801, intron 3 of 5) intron (NM_182801, intron 3 of 5) 9245 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 207.5-24 chr21 26881784 26882349 + 0.5 NA Intergenic Intergenic -36657 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 212.833-26 chr8 136312854 136313317 + 0.5 NA Intergenic MER45A|DNA|hAT-Tip100 -217713 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 122-78 chr6 126176434 126176772 + 0.5 NA Intergenic Intergenic -163186 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 254.667-19 chr20 8514769 8515650 + 0.5 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 266505 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 120.5-93 chrX 33709598 33710084 + 0.5 NA Intergenic Intergenic -370453 NM_000109 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 116.333-64 chr3 182667452 182667728 + 0.5 NA Intergenic L1ME4a|LINE|L1 -125914 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 123.833-46 chr5 53111932 53112284 + 0.5 NA intron (NR_104654, intron 1 of 1) intron (NR_104654, intron 1 of 1) 2266 NR_104654 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 198.833-23 chr5 85974314 85975125 + 0.5 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -307725 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 137.167-76 chrX 44249479 44249956 + 0.5 NA intron (NM_025184, intron 5 of 14) intron (NM_025184, intron 5 of 14) 93955 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 144.667-20 chr11 57033800 57034256 + 0.5 NA Intergenic Intergenic -3506 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 155.333-29 chr14 67645385 67645937 + 0.5 NA exon (NM_001172, exon 4 of 8) exon (NM_001172, exon 4 of 8) 25741 NM_001172 384 Hs.226007 NM_001172 ENSG00000081181 ARG2 - arginase 2 protein-coding 131.5-85 chr8 110057400 110057747 + 0.5 NA Intergenic Intergenic -81802 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 130.667-29 chr15 38556483 38557030 + 0.5 NA intron (NM_001306086, intron 2 of 14) MER3|DNA|hAT-Charlie 8058 NM_001306086 10125 Hs.591127 NM_005739 ENSG00000172575 RASGRP1 CALDAG-GEFI|CALDAG-GEFII|RASGRP RAS guanyl releasing protein 1 protein-coding 151.5-21 chr14 52197189 52197729 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR -70239 NM_000953 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 142.833-2 chr10 44792355 44792841 + 0.5 NA Intergenic Intergenic -118718 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 227.333-15 chr17 72273235 72274120 + 0.5 NA Intergenic Intergenic -69134 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 170.667-19 chr14 68263866 68264269 + 0.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 364720 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 194.333-30 chr4 152958704 152959383 + 0.5 NA intron (NM_001371116, intron 4 of 11) intron (NM_001371116, intron 4 of 11) 16060 NM_033393 85462 Hs.132629 NM_033393 ENSG00000137460 FHDC1 - FH2 domain containing 1 protein-coding 195.167-25 chr4 61289135 61289597 + 0.5 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 87194 NM_001371342 149.167-11 chr11 108062112 108062480 + 0.5 NA intron (NM_003478, intron 7 of 18) L1M5|LINE|L1 53398 NM_003478 8065 Hs.440320 NM_003478 ENSG00000166266 CUL5 CUL-5|VACM-1|VACM1 cullin 5 protein-coding 122-17 chr13 108526442 108526759 + 0.5 NA Intergenic Intergenic -69305 NM_015011 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 141.667-77 chr4 60769592 60770022 + 0.5 NA Intergenic L1MA3|LINE|L1 -152812 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 134.833-16 chr14 92162135 92162492 + 0.5 NA 3' UTR (NM_017437, exon 16 of 16) 3' UTR (NM_017437, exon 16 of 16) 40344 NM_001322272 53981 Hs.657632 NM_017437 ENSG00000165934 CPSF2 CPSF100 cleavage and polyadenylation specific factor 2 protein-coding 236.833-19 chr8 119983899 119984435 + 0.5 NA intron (NM_022783, intron 4 of 8) intron (NM_022783, intron 4 of 8) 110445 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 154.667-25 chr14 71361407 71361880 + 0.5 NA intron (NM_001354285, intron 2 of 24) intron (NM_001354285, intron 2 of 24) -36694 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 119-39 chr16 64780739 64781075 + 0.5 NA Intergenic Intergenic 341156 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 140.667-85 chr8 86723227 86723629 + 0.5 NA intron (NM_019098, intron 3 of 17) MamGypsy2-I|LTR|Gypsy 20247 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 200.667-5 chr1 172466125 172466656 + 0.5 NA intron (NM_139240, intron 6 of 6) intron (NM_139240, intron 6 of 6) 13497 NM_001300760 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 175.833 chr1 109799033 109799517 + 0.5 NA Intergenic AluSx1|SINE|Alu -35352 NM_139053 79574 Hs.485352 NM_024526 ENSG00000198758 EPS8L3 EPS8R3 EPS8 like 3 protein-coding 118.667-79 chr3 95855677 95856142 + 0.5 NA Intergenic L1M5|LINE|L1 -172716 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 144.667-39 chr14 65829941 65830446 + 0.5 NA Intergenic LTR48B|LTR|ERV1 359091 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 124-30 chr13 110151344 110151797 + 0.5 NA intron (NM_001845, intron 51 of 51) intron (NM_001845, intron 51 of 51) 29868 NR_148221 105370361 Hs.134728 NR_148221 LOC105370361 - uncharacterized LOC105370361 ncRNA 128-47 chr2 69923572 69923918 + 0.5 NA intron (NM_001202513, intron 3 of 5) intron (NM_001202513, intron 3 of 5) 8636 NM_002357 4084 Hs.468908 NM_002357 ENSG00000059728 MXD1 BHLHC58|MAD|MAD1 MAX dimerization protein 1 protein-coding 120.167-71 chr6 115748311 115748719 + 0.5 NA Intergenic Intergenic -104680 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 195.333-30 chr21 28846573 28847167 + 0.5 NA Intergenic L1PA15|LINE|L1 38497 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 137.5-27 chr13 72286781 72287276 + 0.5 NA Intergenic Intergenic -419824 NM_001366712 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 233.5-4 chr10 41845590 41846347 + 0.5 NA Intergenic Intergenic 522077 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 213.333-12 chr14 38063467 38064324 + 0.5 NA Intergenic L1ME4b|LINE|L1 -144009 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 142.833 chr1 184264194 184264692 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -122586 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 131.833-8 chr11 42260975 42261478 + 0.5 NA Intergenic Intergenic -7536 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 123.333-3 chr1 61400164 61400527 + 0.5 NA intron (NM_001134673, intron 7 of 10) intron (NM_001134673, intron 7 of 10) -146827 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 146-50 chr3 67572162 67572632 + 0.5 NA intron (NM_001177599, intron 2 of 10) intron (NM_001177599, intron 2 of 10) 82217 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 165.667-15 chr11 76901739 76902238 + 0.5 NA intron (NM_001300953, intron 1 of 9) Tigger2|DNA|TcMar-Tigger 41070 NM_018367 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 200.5-41 chr7 11260511 11261036 + 0.5 NA Intergenic Intergenic 286901 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 137.5-62 chr3 150739199 150739530 + 0.5 NA promoter-TSS (NR_121657) promoter-TSS (NR_121657) -379 NR_121657 101928105 NR_121657 LOC101928105 - uncharacterized LOC101928105 ncRNA 139.833-68 chr6 88541278 88541787 + 0.5 NA Intergenic Intergenic -2163 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 113.333-64 chr20 62227205 62227712 + 0.5 NA promoter-TSS (NR_160555) promoter-TSS (NR_160555) -785 NR_160555 105369209 Hs.711994 NR_160555 LOC105369209 - uncharacterized LOC105369209 ncRNA 132.333-49 chr2 20896700 20897081 + 0.5 NA Intergenic AluY|SINE|Alu -73760 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 158.5-65 chr5 108175972 108176440 + 0.5 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 205892 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 273-18 chr8 125691685 125692561 + 0.5 NA Intergenic MER113A|DNA|hAT-Charlie 259074 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 209-3 chr1 110920180 110920967 + 0.5 NA Intergenic L1MC1|LINE|L1 43349 NM_018372 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 119.333-48 chr2 23081830 23082106 + 0.5 NA Intergenic L1M4b|LINE|L1 -303211 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 150.333-46 chr17 64484347 64484768 + 0.5 NA intron (NM_007215, intron 5 of 7) L2a|LINE|L2 12497 NM_007215 11232 Hs.437009 NM_007215 ENSG00000256525 POLG2 HP55|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB DNA polymerase gamma 2, accessory subunit protein-coding 186.833-40 chr7 2873361 2873821 + 0.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR -29283 NM_007353 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 160.667-71 chr5 164263069 164263500 + 0.5 NA Intergenic Intergenic 204118 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 134.5-56 chr4 44579798 44580176 + 0.5 NA Intergenic Intergenic 71654 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 121.5-29 chr12 69034708 69035146 + 0.5 NA Intergenic Intergenic -71687 NM_001874 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 148.833-2 chr1 182553247 182553783 + 0.5 NA exon (NM_001137669, exon 19 of 22) exon (NM_001137669, exon 19 of 22) 35741 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 127.833 chr1 24758435 24758952 + 0.5 NA intron (NM_013943, intron 1 of 5) AluSx|SINE|Alu 13246 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 171.5-51 chr5 105268914 105269418 + 0.5 NA Intergenic Intergenic 169692 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 136.5-17 chr11 18487327 18487881 + 0.5 NA intron (NM_006292, intron 7 of 9) FLAM_C|SINE|Alu 31748 NM_144972 160287 Hs.668877 NM_144972 ENSG00000166800 LDHAL6A LDH6A lactate dehydrogenase A like 6A protein-coding 150.167-39 chr22 43461918 43462289 + 0.5 NA intron (NM_001362786, intron 3 of 6) intron (NM_001362786, intron 3 of 6) 45551 NM_001362786 758 Hs.159538 NM_001044370 ENSG00000186732 MPPED1 239AB|C22orf1|FAM1A metallophosphoesterase domain containing 1 protein-coding 115.167-42 chr16 35388813 35389283 + 0.5 NA intron (NR_027080, intron 6 of 6) MER5B|DNA|hAT-Charlie 25517 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 191.667-51 chr6 108362758 108363199 + 0.5 NA intron (NR_136553, intron 2 of 8) intron (NR_136553, intron 2 of 8) 67924 NM_145315 246269 Hs.259666 NM_145315 ENSG00000135537 AFG1L AFG1|LACE1|c222389 AFG1 like ATPase protein-coding 162.667-42 chr2 102891900 102892540 + 0.5 NA intron (NR_135562, intron 2 of 3) intron (NR_135562, intron 2 of 3) 3502 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 166.333-69 chr6 113009661 113010044 + 0.5 NA Intergenic Intergenic 423595 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 209-15 chr12 18515244 18515979 + 0.5 NA intron (NM_001288774, intron 24 of 32) L1M1|LINE|L1 221898 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 144.5-17 chr11 112486405 112486843 + 0.5 NA intron (NR_120559, intron 2 of 2) L1MC4|LINE|L1 2279 NR_120560 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 170.833-20 chr2 142872039 142872532 + 0.5 NA Intergenic AluY|SINE|Alu -5379 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 179.333-30 chr2 104110379 104110914 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 297686 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 154-7 chr10 43192360 43192797 + 0.5 NA Intergenic Intergenic 37161 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 118.333-107 chr7 109665755 109666045 + 0.5 NA Intergenic Intergenic 294313 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 120.5-19 chr11 96369633 96369938 + 0.5 NA intron (NM_024725, intron 7 of 9) Tigger1|DNA|TcMar-Tigger 20031 NM_001363594 79780 Hs.525088 NM_014148 ENSG00000149231 CCDC82 HSPC048 coiled-coil domain containing 82 protein-coding 122-33 chr19 42039713 42040076 + 0.5 NA intron (NM_002088, intron 11 of 18) AluJo|SINE|Alu 25911 NM_002088 2901 Hs.367799 NM_002088 ENSG00000105737 GRIK5 EAA2|GRIK2|GluK5|KA2 glutamate ionotropic receptor kainate type subunit 5 protein-coding 162.833-17 chr18 63796077 63796607 + 0.5 NA exon (NM_001261831, exon 4 of 7) exon (NM_001261831, exon 4 of 7) 18565 NM_001261830 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 126.167-5 chr1 159748312 159748770 + 0.5 NA Intergenic Intergenic -32421 NM_001319659 54935 Hs.425801 NM_017823 ENSG00000158716 DUSP23 DUSP25|LDP-3|LDP3|MOSP|VHZ dual specificity phosphatase 23 protein-coding 114.833-55 chr5 152385079 152385577 + 0.5 NA Intergenic MIRc|SINE|MIR 19951 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 155.833-58 chr5 100433017 100433462 + 0.5 NA Intergenic Intergenic -44985 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 135-11 chr10 31648317 31648751 + 0.5 NA Intergenic Intergenic -248779 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 123.333-92 chr6 14241960 14242307 + 0.5 NA Intergenic Intergenic 43321 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 196.833-4 chr1 156361144 156361846 + 0.5 NA Intergenic Tigger3|DNA|TcMar-Tigger -7716 NR_146764 57127 Hs.131835 NM_020407 ENSG00000132677 RHBG SLC42A2 Rh family B glycoprotein (gene/pseudogene) protein-coding 125.167-66 chr6 44412002 44412380 + 0.5 NA intron (NM_001253, intron 8 of 15) intron (NM_001253, intron 8 of 15) -23450 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 125.333-30 chr11 113551588 113552062 + 0.5 NA Intergenic Intergenic -76427 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 133.667-16 chr10 96665608 96666049 + 0.5 NA intron (NM_152309, intron 2 of 16) Charlie29a|DNA|hAT-Charlie 54686 NM_152309 118788 Hs.310456 NM_152309 ENSG00000155629 PIK3AP1 BCAP phosphoinositide-3-kinase adaptor protein 1 protein-coding 117.333-83 chr4 156910585 156911010 + 0.5 NA intron (NR_036641, intron 1 of 6) L1MD2|LINE|L1 61002 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 171.833-10 chr11 19106478 19107113 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -10350 NM_001001483 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 131.833-31 chr2 50655235 50655617 + 0.5 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 40836 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 113.833-26 chr16 2393708 2394123 + 0.5 NA intron (NR_003574, intron 8 of 16) L1ME2|LINE|L1 -35532 NM_001761 899 Hs.1973 NM_001761 ENSG00000162063 CCNF FBX1|FBXO1 cyclin F protein-coding 126.5-22 chr14 32880594 32880886 + 0.5 NA Intergenic L1MA2|LINE|L1 -58139 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 133.5-72 chr7 27425593 27425880 + 0.5 NA Intergenic Intergenic -178507 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 147.5-14 chr10 90350922 90351430 + 0.5 NA Intergenic L2c|LINE|L2 189629 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 118.833-60 chr4 32454454 32454758 + 0.5 NA Intergenic MSTD|LTR|ERVL-MaLR 103568 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 280.167 chr14 104264898 104265507 + 0.5 NA intron (NR_146612, intron 1 of 2) intron (NR_146612, intron 1 of 2) 41618 NR_146611 145195 Hs.534297 NR_146611 ENSG00000258913 LINC02691 C14orf144 long intergenic non-protein coding RNA 2691 ncRNA 139.5-37 chr22 32672739 32673117 + 0.5 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -127888 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 120-46 chr18 76670946 76671388 + 0.5 NA Intergenic Intergenic -18862 NR_122073 400661 Hs.514963 NR_122073 ENSG00000276397 LINC01879 - long intergenic non-protein coding RNA 1879 ncRNA 158.5-62 chr5 22439686 22440294 + 0.5 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -226140 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 137.5-7 chr1 158261251 158261681 + 0.5 NA Intergenic LOR1a|LTR|ERV1 7042 NM_001763 909 Hs.1309 NM_001763 ENSG00000158477 CD1A CD1|FCB6|HTA1|R4|T6 CD1a molecule protein-coding 154-54 chr3 114126337 114126745 + 0.5 NA Intergenic L2c|LINE|L2 52235 NM_001290809 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 120.667-13 chr10 80459275 80459582 + 0.5 NA promoter-TSS (NM_001351269) promoter-TSS (NM_001351269) 43 NM_001351269 81619 Hs.308615 NM_030927 ENSG00000108219 TSPAN14 DC-TM4F2|TM4SF14|tspan-14 tetraspanin 14 protein-coding 232.5-6 chr14 40652897 40653525 + 0.5 NA Intergenic AluJo|SINE|Alu -301500 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 115.833-82 chr8 124943183 124943481 + 0.5 NA non-coding (NR_027321, exon 2 of 4) non-coding (NR_027321, exon 2 of 4) 1324 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 158.833-37 chr3 12621155 12621747 + 0.5 NA intron (NR_148942, intron 1 of 16) intron (NR_148942, intron 1 of 16) 42057 NM_001354690 5894 Hs.159130 NM_002880 ENSG00000132155 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 197.5-19 chr14 44453948 44454394 + 0.5 NA Intergenic Intergenic 53112 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 131.167-53 chr3 110748275 110748787 + 0.5 NA Intergenic Intergenic 321428 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 125.667-47 chr18 5190030 5190341 + 0.5 NA intron (NM_001330553, intron 1 of 1) MSTD|LTR|ERVL-MaLR 7072 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 173.667-24 chr18 23297253 23297933 + 0.5 NA non-coding (NR_134875, exon 14 of 14) non-coding (NR_134875, exon 14 of 14) 140368 NM_032933 85019 Hs.137562 NM_032933 ENSG00000134490 TMEM241 C18orf45|hVVT transmembrane protein 241 protein-coding 149.333-40 chr14 92146814 92147329 + 0.5 NA intron (NM_001322272, intron 9 of 15) L2a|LINE|L2 25102 NM_001322272 53981 Hs.657632 NM_017437 ENSG00000165934 CPSF2 CPSF100 cleavage and polyadenylation specific factor 2 protein-coding 140-23 chr14 55572431 55572865 + 0.5 NA Intergenic Intergenic 7444 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 122.667-52 chr20 40013383 40013743 + 0.5 NA Intergenic Intergenic 9102 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 159.167-8 chr10 75031856 75032324 + 0.5 NA 3' UTR (NM_012330, exon 18 of 18) 3' UTR (NM_012330, exon 18 of 18) 10357 NR_145812 109623471 NR_145812 SNORD172 - small nucleolar RNA, C/D box 172 snoRNA 141.833-40 chr6 74457852 74458431 + 0.5 NA intron (NR_110856, intron 2 of 3) AluSg7|SINE|Alu 388690 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 145.833-63 chr5 42161082 42161478 + 0.5 NA intron (NR_104636, intron 1 of 3) L1ME2z|LINE|L1 14065 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 120.833-78 chr9 133649069 133649480 + 0.5 NA intron (NM_000787, intron 6 of 11) L1ME3G|LINE|L1 8134 NR_102735 138948 Hs.223858 NR_002783 ENSG00000225756 DBH-AS1 NCRNA00118 DBH antisense RNA 1 ncRNA 156-28 chr14 55668305 55668680 + 0.5 NA intron (NR_073129, intron 35 of 45) L1MC5|LINE|L1 88285 NM_001271014 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 132.333 chr1 10156976 10157402 + 0.5 NA intron (NM_006048, intron 20 of 26) AluSz6|SINE|Alu -53381 NM_183416 23095 Hs.97858 NM_015074 ENSG00000054523 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 201.5-21 chr2 229769980 229770523 + 0.5 NA intron (NM_001348330, intron 39 of 41) AluJo|SINE|Alu -55696 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 159.167-5 chr10 36032857 36033346 + 0.5 NA Intergenic Intergenic 254799 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 136.5-38 chr16 14072945 14073530 + 0.5 NA intron (NM_001365419, intron 1 of 4) MER20B|DNA|hAT-Charlie 1918 NM_001365412 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 120.167-45 chr20 14577195 14577479 + 0.5 NA intron (NR_104193, intron 1 of 4) intron (NR_104193, intron 1 of 4) 22953 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 150.167-32 chr2 150008294 150008736 + 0.5 NA Intergenic Intergenic -149324 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 155.833-30 chr2 154907093 154907404 + 0.5 NA Intergenic L1PA15-16|LINE|L1 208553 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 173.833-39 chr4 30346233 30346620 + 0.5 NA Intergenic Intergenic -373943 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 121.667-47 chr18 62331395 62331873 + 0.5 NA intron (NM_001270949, intron 1 of 8) intron (NM_001270949, intron 1 of 8) 6324 NM_001270951 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 125.333-124 chr8 129650123 129650503 + 0.5 NA intron (NR_130917, intron 1 of 3) MIR|SINE|MIR 29926 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 142.5-56 chr4 95607574 95607936 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR -58782 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 118.333-61 chr2 187523140 187523698 + 0.5 NA intron (NM_001318941, intron 1 of 7) L1MC3|LINE|L1 31016 NM_006287 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 141.5-2 chr1 118212594 118212908 + 0.5 NA Intergenic L1MA3|LINE|L1 -27523 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 123.833-18 chr14 61686598 61686931 + 0.5 NA intron (NR_047116, intron 1 of 1) L1MC2|LINE|L1 -8749 NM_001530 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 158.5-31 chr18 54717481 54717860 + 0.5 NA Intergenic Intergenic -110807 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 134.667-54 chr20 53446792 53447317 + 0.5 NA intron (NM_173485, intron 2 of 2) LTR78B|LTR|ERV1 -105716 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 137.5-23 chr12 55125408 55125836 + 0.5 NA Intergenic LTR12_|LTR|ERV1 -4147 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 160.167-46 chr3 116173158 116173598 + 0.5 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -186646 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 137.833-56 chr8 142239969 142240266 + 0.5 NA intron (NM_001366901, intron 12 of 13) L1MEd|LINE|L1 41761 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 130.5-10 chr10 68436704 68437042 + 0.5 NA intron (NM_001080449, intron 10 of 20) L1MB8|LINE|L1 -29579 NM_001042417 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 132-17 chr11 67553810 67554426 + 0.5 NA Intergenic AluSg|SINE|Alu -29477 NM_000852 2950 Hs.523836 NM_000852 ENSG00000084207 GSTP1 DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI glutathione S-transferase pi 1 protein-coding 190.5-50 chr8 80871319 80871868 + 0.5 NA intron (NM_001033723, intron 1 of 8) L2a|LINE|L2 2875 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 123.167-92 chr7 107194640 107194978 + 0.5 NA intron (NM_001244262, intron 8 of 10) intron (NM_001244262, intron 8 of 10) 25806 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 139.667-22 chr12 43658277 43658794 + 0.5 NA Intergenic MIR|SINE|MIR 100255 NM_001098614 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 223.667-3 chr10 72566411 72566914 + 0.5 NA exon (NM_001363513, exon 2 of 13) exon (NM_001363513, exon 2 of 13) -42676 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 279.833-3 chr14 73944560 73945230 + 0.5 NA intron (NM_152445, intron 2 of 8) intron (NM_152445, intron 2 of 8) -5039 NM_182480 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 133.5-9 chr10 11414776 11415252 + 0.5 NA Intergenic Intergenic -70340 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 131-30 chr2 27122861 27123161 + 0.5 NA promoter-TSS (NM_032604) promoter-TSS (NM_032604) -804 NM_032604 84696 Hs.375791 NM_032604 ENSG00000143994 ABHD1 LABH1 abhydrolase domain containing 1 protein-coding 175.5 chr1 10089133 10089696 + 0.5 NA intron (NM_006048, intron 2 of 26) AluJo|SINE|Alu 56456 NM_006048 10277 Hs.593974 NM_006048 ENSG00000130939 UBE4B E4|HDNB1|UBOX3|UFD2|UFD2A ubiquitination factor E4B protein-coding 135.167-9 chr1 166378192 166378792 + 0.5 NA Intergenic MER5A1|DNA|hAT-Charlie 111547 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 117.833-13 chr11 47711250 47711591 + 0.5 NA intron (NM_024783, intron 3 of 18).2 LTR48|LTR|ERV1 3949 NM_024783 79841 Hs.147377 NM_024783 ENSG00000165923 AGBL2 CCP2 ATP/GTP binding protein like 2 protein-coding 121.833-81 chrX 82212711 82213131 + 0.5 NA Intergenic (TATTT)n|Simple_repeat|Simple_repeat 1010819 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 146.833-4 chr10 21295656 21296069 + 0.5 NA Intergenic Intergenic 77088 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 172.333-56 chr4 44528169 44528745 + 0.5 NA Intergenic L1M1|LINE|L1 -79648 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 116.167-74 chr7 96198485 96198799 + 0.5 NA intron (NM_001160210, intron 5 of 17) MIRb|SINE|MIR 21114 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 143.333-66 chr5 17201074 17201525 + 0.5 NA intron (NR_027253, intron 1 of 2) AluSx1|SINE|Alu -15524 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 148.5-13 chr11 98352322 98352934 + 0.5 NA Intergenic MER52A|LTR|ERV1 -668321 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 125-43 chr2 132575915 132576284 + 0.5 NA intron (NM_001508, intron 1 of 1) MLT1A0|LTR|ERVL-MaLR 94106 NM_001321234 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 123.833-26 chr19 29721075 29721439 + 0.5 NA Intergenic MamRep1879|DNA|hAT-Tip100? -5468 NM_001256047 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 139.5-18 chr15 61547196 61547476 + 0.5 NA Intergenic L2c|LINE|L2 -182582 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 227.167-30 chr8 26489738 26490233 + 0.5 NA Intergenic AluSz|SINE|Alu 23887 NM_007257 10687 Hs.591838 NM_007257 ENSG00000240694 PNMA2 MA2|MM2|RGAG2 PNMA family member 2 protein-coding 128-21 chr12 38408978 38409458 + 0.5 NA Intergenic Intergenic 92444 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 159.333-53 chr4 61228147 61228741 + 0.5 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 26272 NM_001371342 171.667-17 chr12 42819670 42820413 + 0.5 NA Intergenic Intergenic 127825 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 132.5-60 chr3 132680024 132680483 + 0.5 NA TTS (NM_153240) TTS (NM_153240) 19556 NM_001321238 79876 Hs.170737 NM_024818 ENSG00000081307 UBA5 EIEE44|SCAR24|THIFP1|UBE1DC1 ubiquitin like modifier activating enzyme 5 protein-coding 142-19 chr10 112076439 112077036 + 0.5 NA Intergenic MLT2A2|LTR|ERVL 107028 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 140.333-29 chr18 57120522 57120860 + 0.5 NA Intergenic L1MC2|LINE|L1 -26396 NM_001257964 284257 Hs.127882 NM_001257964 ENSG00000228075 BOD1L2 BOD1P|FAM44C biorientation of chromosomes in cell division 1 like 2 protein-coding 172.833-38 chr4 86027845 86028374 + 0.5 NA intron (NM_001363657, intron 13 of 13) intron (NM_001363657, intron 13 of 13) -91697 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 172.333-49 chr3 23966810 23967407 + 0.5 NA intron (NM_005126, intron 6 of 7) AluSq2|SINE|Alu 20987 NM_001145425 9975 Hs.37288 NM_005126 ENSG00000174738 NR1D2 BD73|EAR-1R|REVERBB|REVERBbeta|RVR nuclear receptor subfamily 1 group D member 2 protein-coding 133.333-91 chr4 156911536 156911869 + 0.5 NA intron (NR_036641, intron 1 of 6) MIR|SINE|MIR 60097 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 157.5-27 chr17 71522477 71522957 + 0.5 NA Intergenic L1PA16|LINE|L1 -320538 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 149.333-35 chr14 59465927 59466493 + 0.5 NA promoter-TSS (NM_022571) promoter-TSS (NM_022571) -830 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 205.667-16 chr13 106937193 106937771 + 0.5 NA Intergenic Intergenic 283602 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 162.5-17 chr12 61497303 61497740 + 0.5 NA Intergenic Intergenic 695318 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 115.833-52 chr4 54203202 54203524 + 0.5 NA Intergenic Intergenic -25930 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 160.5-59 chr8 53261647 53262182 + 0.5 NA Intergenic L1M8|LINE|L1 -10217 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 127.333-89 chr5 26956790 26957229 + 0.5 NA intron (NM_016279, intron 2 of 11) intron (NM_016279, intron 2 of 11) 81577 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 146.667-47 chr2 15959872 15960259 + 0.5 NA Intergenic Intergenic -17632 NR_161163 10408 Hs.651453 NR_110230 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand ncRNA 122.333-80 chr4 34188838 34189353 + 0.5 NA intron (NR_147184, intron 2 of 3) MSTA|LTR|ERVL-MaLR 80652 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 126.167-90 chr8 117175319 117175645 + 0.5 NA 3' UTR (NM_001172813, exon 11 of 11) 3' UTR (NM_001172813, exon 11 of 11) 40487 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 386-5 chr5 129638765 129639786 + 0.5 NA intron (NM_133638, intron 10 of 22) intron (NM_133638, intron 10 of 22) -108819 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 146.833-23 chr16 59592706 59593263 + 0.5 NA Intergenic Intergenic 162207 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 119.5-66 chr3 108564116 108564450 + 0.5 NA intron (NM_020890, intron 12 of 20) MIRb|SINE|MIR 25155 NM_020890 57650 Hs.591308 NM_020890 ENSG00000163507 CIP2A KIAA1524|p90 cell proliferation regulating inhibitor of protein phosphatase 2A protein-coding 122.5-12 chr10 35066684 35067100 + 0.5 NA intron (NM_003591, intron 2 of 20) intron (NM_003591, intron 2 of 20) 7391 NM_001324376 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 174.167-26 chr3 118997347 118998011 + 0.5 NA intron (NM_001353319, intron 1 of 7) intron (NM_001353319, intron 1 of 7) 37167 NM_001353325 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 152.833-37 chr2 198034691 198035208 + 0.5 NA intron (NM_006226, intron 1 of 5) L1MC4|LINE|L1 230356 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 122.667-34 chr17 35175363 35175773 + 0.5 NA intron (NM_001033576, intron 14 of 19) L2b|LINE|L2 18825 NM_152462 146861 Hs.514814 NM_152462 ENSG00000164729 SLC35G3 AMAC1|TMEM21A solute carrier family 35 member G3 protein-coding 123.5-70 chr6 49081095 49081494 + 0.5 NA Intergenic L1M1|LINE|L1 381959 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 200.667-43 chr5 27063053 27063732 + 0.5 NA Intergenic AluY|SINE|Alu -24806 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 114.333-31 chr12 91335479 91335966 + 0.5 NA Intergenic Intergenic -152905 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 123.667-36 chr15 56184689 56185067 + 0.5 NA intron (NM_001370561, intron 4 of 11) L2a|LINE|L2 5054 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 117.167-62 chr3 79234186 79234528 + 0.5 NA intron (NM_002941, intron 2 of 30) L1PA16|LINE|L1 -177370 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 132.333-113 chr9 35665703 35666156 + 0.5 NA promoter-TSS (NM_032818) promoter-TSS (NM_032818) -734 NM_032818 84904 Hs.534579 NM_032818 ENSG00000137135 ARHGEF39 C9orf100 Rho guanine nucleotide exchange factor 39 protein-coding 135.167-90 chr8 79910535 79910954 + 0.5 NA Intergenic AluJo|SINE|Alu -39007 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 120.667-61 chr2 112637492 112637868 + 0.5 NA Intergenic Intergenic 6500 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 133.667-34 chr15 56240514 56240847 + 0.5 NA intron (NM_001370561, intron 4 of 11) intron (NM_001370561, intron 4 of 11) 3199 NM_001368073 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 215.667-42 chr5 78033358 78033880 + 0.5 NA intron (NM_003664, intron 24 of 26) intron (NM_003664, intron 24 of 26) 75372 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 116.667-14 chr10 81116134 81116525 + 0.5 NA Intergenic L2b|LINE|L2 466532 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 134-25 chr11 108902945 108903276 + 0.5 NA intron (NM_004398, intron 16 of 17) L1MB7|LINE|L1 238041 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 118.833-73 chr9 12027714 12028141 + 0.5 NA Intergenic L1MD2|LINE|L1 -665458 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 191.5-43 chr5 166626104 166626704 + 0.5 NA Intergenic L2c|LINE|L2 299966 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 177.167-41 chr6 21370377 21370847 + 0.5 NA Intergenic Intergenic 141280 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 120.333-60 chr2 177116143 177116489 + 0.5 NA Intergenic L1ME3D|LINE|L1 96095 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 189.5-33 chr20 48840885 48841416 + 0.5 NA Intergenic AluJr4|SINE|Alu -13151 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 116.667-13 chr10 53254358 53254717 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR -482837 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 137.5-43 chr2 24017392 24017835 + 0.5 NA intron (NM_001346880, intron 6 of 13) intron (NM_001346880, intron 6 of 13) 7528 NM_001346880 388931 Hs.407482 NM_001080473 ENSG00000205639 MFSD2B - major facilitator superfamily domain containing 2B protein-coding 123.667-87 chr5 79707710 79708281 + 0.5 NA intron (NM_153610, intron 1 of 12) MLT1A0|LTR|ERVL-MaLR 18159 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 114.167-82 chr5 151161200 151161544 + 0.5 NA Intergenic MER83|LTR|ERV1 -3593 NM_001155 309 Hs.412117 NM_001155 ENSG00000197043 ANXA6 ANX6|CBP68|CPB-II|p68|p70 annexin A6 protein-coding 123.667-120 chr9 70837820 70838204 + 0.5 NA intron (NM_001366143, intron 5 of 25) MIRb|SINE|MIR -27928 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 137.167-52 chr5 107333837 107334237 + 0.5 NA Intergenic Intergenic -323023 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 143.833-36 chr5 27238804 27239270 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -200451 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 158-41 chr5 87629026 87629380 + 0.5 NA Intergenic Intergenic -32839 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 200.667-25 chr15 48225016 48225568 + 0.5 NA intron (NM_001184832, intron 4 of 26) intron (NM_001184832, intron 4 of 26) 18990 NM_001184832 6557 Hs.123116 NM_000338 ENSG00000074803 SLC12A1 BSC1|NKCC2 solute carrier family 12 member 1 protein-coding 138.667-50 chr2 236555067 236555464 + 0.5 NA Intergenic Intergenic -14560 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 134.333-59 chr2 80086253 80086778 + 0.5 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 218237 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 117.833-62 chr5 25616768 25617176 + 0.5 NA Intergenic Intergenic 426019 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 128.667-90 chr5 6231888 6232209 + 0.5 NA Intergenic MER2|DNA|TcMar-Tigger 105244 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 199-33 chr7 80035065 80035782 + 0.5 NA Intergenic Intergenic -99408 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 149.167-20 chr14 67550511 67550859 + 0.5 NA intron (NM_020715, intron 2 of 28) MER102b|DNA|hAT-Charlie -16835 NM_001348546 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 121.667-98 chr8 73898192 73898588 + 0.5 NA Intergenic Intergenic 19408 NR_147034 101926947 Hs.521636 NR_147034 LINC01617 C8orf23|NCRNA00249|XLOC_006844 long intergenic non-protein coding RNA 1617 ncRNA 171.333-43 chr22 42658048 42658525 + 0.5 NA Intergenic AluSg|SINE|Alu -8894 NM_000398 1727 Hs.561064 NM_000398 ENSG00000100243 CYB5R3 B5R|DIA1 cytochrome b5 reductase 3 protein-coding 186-61 chrX 41284622 41285162 + 0.5 NA Intergenic Intergenic 9153 NR_135616 105373185 Hs.546119 NR_135616 ENSG00000223714 LINC02601 - long intergenic non-protein coding RNA 2601 ncRNA 166.333-23 chr14 87485108 87485790 + 0.5 NA Intergenic Intergenic 169845 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 142.833-74 chr8 64459366 64459732 + 0.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 80400 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 134.333-30 chr12 117673565 117674018 + 0.5 NA intron (NM_173598, intron 4 of 19) intron (NM_173598, intron 4 of 19) 295199 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 121-44 chr2 31650271 31650620 + 0.5 NA Intergenic Intergenic -69507 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 156.333-23 chr12 61324984 61325363 + 0.5 NA Intergenic THE1A|LTR|ERVL-MaLR 867666 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 114.5-61 chr22 19876534 19876772 + 0.5 NA 3' UTR (NM_001352300, exon 17 of 17) 3' UTR (NM_001352300, exon 17 of 17) -21779 NM_053004 54584 Hs.105642 NM_053004 ENSG00000185838 GNB1L DGCRK3|FKSG1|GY2|WDR14|WDVCF G protein subunit beta 1 like protein-coding 139.167-70 chr9 22355699 22356320 + 0.5 NA Intergenic Intergenic -90815 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 175.167-17 chr12 5558933 5559387 + 0.5 NA Intergenic Intergenic 65028 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 115.167-69 chr3 72665911 72666322 + 0.5 NA Intergenic Intergenic -1867 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 132.167-68 chr8 78957017 78957302 + 0.5 NA Intergenic L1PA5|LINE|L1 119630 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 124.333-92 chr7 16475801 16476136 + 0.5 NA Intergenic L2|LINE|L2 -10230 NM_015464 25928 Hs.648106 NM_015464 ENSG00000171243 SOSTDC1 CDA019|DAND7|ECTODIN|USAG1 sclerostin domain containing 1 protein-coding 138.333-42 chr15 94315738 94316252 + 0.5 NA intron (NM_018349, intron 3 of 21) intron (NM_018349, intron 3 of 21) 17794 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 163-4 chr1 169269832 169270313 + 0.5 NA intron (NR_104229, intron 7 of 12) intron (NR_104229, intron 7 of 12) 97725 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 176.334 chr1 197435830 197436586 + 0.5 NA intron (NM_001193640, intron 7 of 9) Tigger2a|DNA|TcMar-Tigger 167956 NM_201253 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 116.167-13 chr1 244306122 244306509 + 0.5 NA Intergenic MER50-int|LTR|ERV1 -46320 NM_001276348 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 236-21 chr4 91007808 91008625 + 0.5 NA intron (NM_001145065, intron 9 of 10) L1M2a|LINE|L1 773185 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 114.833-25 chr17 62967066 62967374 + 0.5 NA intron (NM_025185, intron 1 of 25) intron (NM_025185, intron 1 of 25) 985 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 130.333-46 chr2 7279387 7279670 + 0.5 NA Intergenic Intergenic -141733 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 135.167-15 chr11 26321555 26321840 + 0.5 NA intron (NM_001313726, intron 2 of 27) L1MEj|LINE|L1 -10433 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 113.5-32 chr12 101823012 101823444 + 0.5 NA intron (NM_024312, intron 1 of 20) intron (NM_024312, intron 1 of 20) 7731 NM_024312 79158 Hs.46850 NM_024312 ENSG00000111670 GNPTAB GNPTA|ICD N-acetylglucosamine-1-phosphate transferase subunits alpha and beta protein-coding 128.5-3 chr1 68527448 68527784 + 0.5 NA intron (NR_110671, intron 1 of 2) intron (NR_110671, intron 1 of 2) -30534 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 164.333-54 chr5 5368690 5369175 + 0.5 NA Intergenic MSTD|LTR|ERVL-MaLR -53745 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 132.167-69 chr8 79572713 79573053 + 0.5 NA Intergenic Intergenic -38234 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 277.667-16 chr8 73557065 73557996 + 0.5 NA intron (NM_001164384, intron 10 of 10) intron (NM_001164384, intron 10 of 10) 137456 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 158.833-2 chr1 103821546 103822082 + 0.5 NA Intergenic L1MA2|LINE|L1 71973 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 161-28 chr2 52684986 52685599 + 0.5 NA Intergenic L1MA4A|LINE|L1 17323 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 183.833-18 chr18 4346160 4346589 + 0.5 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 81772 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 204.833-12 chr14 25867959 25868377 + 0.5 NA Intergenic L1MD2|LINE|L1 685262 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 137-5 chr1 197095987 197096347 + 0.5 NA intron (NM_001206846, intron 17 of 26) intron (NM_001206846, intron 17 of 26) -28900 NM_001994 2165 Hs.435782 NM_001994 ENSG00000143278 F13B FXIIIB coagulation factor XIII B chain protein-coding 128.667-106 chr7 103447781 103448176 + 0.5 NA intron (NR_110141, intron 2 of 3) intron (NR_110141, intron 2 of 3) -1771 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 276.833-8 chr7 92847133 92847736 + 0.5 NA intron (NR_110088, intron 1 of 1) L2a|LINE|L2 -10807 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 182.833-50 chr6 81923802 81924324 + 0.5 NA intron (NR_149135, intron 3 of 3) L1MD1|LINE|L1 9417 NR_149136 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 154.5-27 chr17 58504029 58504474 + 0.5 NA intron (NM_004687, intron 13 of 18) intron (NM_004687, intron 13 of 18) 13629 NM_004687 9110 Hs.514373 NM_004687 ENSG00000108389 MTMR4 FYVE-DSP2|ZFYVE11 myotubularin related protein 4 protein-coding 148.333-100 chr8 51651209 51651638 + 0.5 NA intron (NM_144651, intron 2 of 22) intron (NM_144651, intron 2 of 22) 158022 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 149.333-92 chr8 54742154 54742539 + 0.5 NA Intergenic Intergenic 126250 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 117.333-94 chr6 53754831 53755251 + 0.5 NA Intergenic Intergenic -39964 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 116.5-7 chr10 45070721 45071198 + 0.5 NA Intergenic Intergenic 70036 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 171.833-2 chr1 108822322 108822843 + 0.5 NA intron (NM_152763, intron 13 of 15) intron (NM_152763, intron 13 of 15) 34512 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 164.667 chr1 21750711 21751147 + 0.5 NA intron (NM_001350167, intron 6 of 26) intron (NM_001350167, intron 6 of 26) 32220 NM_001350168 84196 Hs.467524 NM_032236 ENSG00000090686 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 128-5 chr1 207813315 207813813 + 0.5 NA intron (NR_135299, intron 4 of 5) intron (NR_135299, intron 4 of 5) -4815 NR_026817 148696 Hs.125511 NM_001039568 LOC148696 - uncharacterized LOC148696 ncRNA 125.167-74 chr8 73521464 73521844 + 0.5 NA intron (NM_001164383, intron 8 of 9) Tigger5b|DNA|TcMar-Tigger 101580 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 184.667-33 chr3 57665121 57665730 + 0.5 NA intron (NM_152678, intron 4 of 19) MIRb|SINE|MIR 27652 NM_152678 201627 Hs.91085 NM_152678 ENSG00000174839 DENND6A AFI1A|FAM116A DENN domain containing 6A protein-coding 139.333-24 chr11 133685098 133685700 + 0.5 NA Intergenic L1ME3G|LINE|L1 124977 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 149.5-59 chr7 1363661 1364262 + 0.5 NA Intergenic L1MB3|LINE|L1 95509 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 143-38 chr2 63152710 63153293 + 0.5 NA intron (NR_148704, intron 17 of 18) intron (NR_148704, intron 17 of 18) -33459 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 137.5-37 chr16 3838370 3838705 + 0.5 NA intron (NM_004380, intron 2 of 30) intron (NM_004380, intron 2 of 30) 41583 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 178-8 chr11 19093958 19094540 + 0.5 NA Intergenic Intergenic -22896 NM_001001483 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 157.167-52 chr5 154730191 154730610 + 0.5 NA intron (NM_001367717, intron 1 of 18) L1ME3A|LINE|L1 17557 NM_015315 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 137.333-35 chr16 62694259 62694597 + 0.5 NA Intergenic Intergenic -657990 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 164.167-70 chrY 11305086 11305590 + 0.5 NA Intergenic BSR/Beta|Satellite|Satellite 1116252 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 118.167-53 chr5 25439684 25440081 + 0.5 NA Intergenic Intergenic 248929 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 180.667-78 chr9 88050701 88051393 + 0.5 NA Intergenic Intergenic 26853 NR_135137 102724156 Hs.633031 NR_135137 LOC102724156 - uncharacterized LOC102724156 ncRNA 142.167-27 chr16 13868845 13869210 + 0.5 NA Intergenic L1MC1|LINE|L1 -51130 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 147.333-61 chr4 10102172 10102614 + 0.5 NA intron (NM_017491, intron 3 of 14) MSTD|LTR|ERVL-MaLR 14406 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 187.167-24 chr3 83612224 83612763 + 0.5 NA Intergenic Intergenic 1257082 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 137.5-76 chr4 110829710 110830314 + 0.5 NA Intergenic Intergenic 30635 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 119.5-108 chr9 113847417 113847757 + 0.5 NA Intergenic L1MC|LINE|L1 -28695 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 128.167-48 chr3 26235110 26235571 + 0.5 NA Intergenic Intergenic -361645 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 154.167-28 chr17 69792492 69792925 + 0.5 NA intron (NR_109972, intron 3 of 4) AluSz|SINE|Alu -168999 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 180.167-28 chr2 205309497 205309897 + 0.5 NA intron (NM_205863, intron 18 of 21) intron (NM_205863, intron 18 of 21) -372803 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 146.5-62 chr4 86147145 86147627 + 0.5 NA intron (NR_110879, intron 3 of 3) intron (NR_110879, intron 3 of 3) 27580 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 148.667-37 chr2 112587472 112587955 + 0.5 NA intron (NR_163920, intron 3 of 3) LTR83|LTR|ERVL 2859 NM_001304354 84269 Hs.375707 NM_032309 ENSG00000125611 CHCHD5 C2orf9|CHTM1|MIC14|MIX14 coiled-coil-helix-coiled-coil-helix domain containing 5 protein-coding 206.833-7 chr17 63409913 63410404 + 0.5 NA intron (NM_025185, intron 20 of 25) L1MA8|LINE|L1 30109 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 125-57 chr3 180698713 180699183 + 0.5 NA Intergenic Intergenic -19459 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 134.5-25 chr12 103880830 103881276 + 0.5 NA intron (NR_027249, intron 9 of 15) intron (NR_027249, intron 9 of 15) -39819 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 154.167-41 chr3 11084873 11085304 + 0.5 NA Intergenic LTR16E1|LTR|ERVL -52150 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 145.167-11 chr10 104429002 104429522 + 0.5 NA intron (NM_001008723, intron 15 of 17) intron (NM_001008723, intron 15 of 17) 51013 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 124.833-24 chr15 68123933 68124275 + 0.5 NA intron (NM_016166, intron 2 of 13) intron (NM_016166, intron 2 of 13) 69528 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 116.5-26 chr17 52092834 52093370 + 0.5 NA intron (NM_001082533, intron 2 of 9) MER6B|DNA|TcMar-Tigger 65612 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 119.5-69 chr4 56329220 56329662 + 0.5 NA 3' UTR (NM_020722, exon 11 of 11) 3' UTR (NM_020722, exon 11 of 11) 58050 NM_181806 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 133.667-46 chr19 56377675 56378006 + 0.5 NA non-coding (NR_003127, exon 7 of 7) non-coding (NR_003127, exon 7 of 7) -9457 NM_001322072 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 148.833-57 chr7 88990273 88990613 + 0.5 NA intron (NM_181646, intron 1 of 3) MIRc|SINE|MIR -194706 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 190.167-40 chr6 162915868 162916275 + 0.5 NA intron (NM_001080379, intron 2 of 4) L1ME2|LINE|L1 138090 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 152.5-29 chr2 179212470 179212912 + 0.5 NA intron (NM_178123, intron 1 of 17) L1PA6|LINE|L1 52141 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 129.5-13 chr10 114938412 114939031 + 0.5 NA intron (NM_139169, intron 1 of 7) intron (NM_139169, intron 1 of 7) 526 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 145-28 chr14 73716187 73716556 + 0.5 NA 3' UTR (NM_194278, exon 12 of 12) 3' UTR (NM_194278, exon 12 of 12) -1987 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 PNMA family member 1 protein-coding 121.667-101 chr8 86491571 86491911 + 0.5 NA intron (NM_001286719, intron 2 of 8) intron (NM_001286719, intron 2 of 8) 16945 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 136.167-7 chr1 166048046 166048374 + 0.5 NA Intergenic Intergenic 106588 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 121.833-37 chr2 236869143 236869437 + 0.5 NA Intergenic Intergenic 186877 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 168.833-37 chr3 194894672 194895304 + 0.5 NA Intergenic HAL1|LINE|L1 -126279 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 149.167-60 chr7 112416582 112416930 + 0.5 NA Intergenic L1MC5a|LINE|L1 -6388 NM_001197080 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 159.5-19 chr16 85037271 85037790 + 0.5 NA intron (NM_001286566, intron 1 of 11) intron (NM_001286566, intron 1 of 11) 9779 NM_014732 9764 Hs.301658 NM_014732 ENSG00000135709 KIAA0513 - KIAA0513 protein-coding 177.333-38 chr2 194248443 194249050 + 0.5 NA Intergenic Intergenic -95523 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 159.833-19 chr14 45529308 45529971 + 0.5 NA Intergenic L1PA16|LINE|L1 185963 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 119.167-45 chr2 119829302 119829576 + 0.5 NA intron (NM_002830, intron 2 of 26) L1MB4|LINE|L1 69517 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 197-9 chr11 57829630 57830137 + 0.5 NA Intergenic Intergenic 68081 NM_001206884 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 225.167-18 chr21 18334298 18335149 + 0.5 NA intron (NM_002772, intron 13 of 24) MIRc|SINE|MIR 69062 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 167-3 chr1 169949583 169950239 + 0.5 NA intron (NM_014970, intron 19 of 19) intron (NM_014970, intron 19 of 19) -55952 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 140-68 chr5 127998540 127998951 + 0.5 NA intron (NR_152803, intron 1 of 1) MLT1F2|LTR|ERVL-MaLR 84430 NR_152800 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 134.667-21 chr12 16486266 16486794 + 0.5 NA Intergenic L1ME3G|LINE|L1 118849 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 157.5-5 chr10 30779855 30780281 + 0.5 NA Intergenic L2a|LINE|L2 56849 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 130.333-62 chr3 90129167 90129646 + 0.5 NA Intergenic LTR50|LTR|ERVL 1021785 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 173.667-67 chr8 101116950 101117583 + 0.5 NA Intergenic Intergenic 65212 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 141.667-35 chr17 28171389 28171955 + 0.5 NA intron (NM_016231, intron 6 of 10) intron (NM_016231, intron 6 of 10) -54891 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 188.333-32 chr2 77216092 77216714 + 0.5 NA intron (NR_146416, intron 1 of 1) AluY|SINE|Alu 230438 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 134.833-44 chr4 72970695 72971155 + 0.5 NA Intergenic Intergenic 98791 NM_001297732 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 117.167-14 chr11 101487044 101487326 + 0.5 NA intron (NM_004621, intron 4 of 12) intron (NM_004621, intron 4 of 12) 32720 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 130.167-77 chr8 127486075 127486565 + 0.5 NA Intergenic L1ME1|LINE|L1 -4181 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 127-98 chr8 124787581 124788212 + 0.5 NA Intergenic Intergenic -34089 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 161.167 chr1 42585872 42586336 + 0.5 NA intron (NM_001080850, intron 9 of 16) intron (NM_001080850, intron 9 of 16) 53084 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 136.667-80 chr5 64765893 64766284 + 0.5 NA intron (NM_173829, intron 1 of 4) L2b|LINE|L2 2603 NM_173829 285672 Hs.69504 NM_173829 ENSG00000153006 SREK1IP1 P18SRP|SFRS12IP1 SREK1 interacting protein 1 protein-coding 220.833-13 chr3 179353947 179354625 + 0.5 NA intron (NM_033540, intron 3 of 17) L2c|LINE|L2 6577 NM_033540 55669 Hs.478383 NM_017927 ENSG00000171109 MFN1 hfzo1|hfzo2 mitofusin 1 protein-coding 116.667-20 chr11 84929357 84929838 + 0.5 NA intron (NM_001351274, intron 5 of 26) MER20B|DNA|hAT-Charlie -6176 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 132.833-7 chr10 4730007 4730444 + 0.5 NA Intergenic Intergenic -52155 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 124.167-89 chr8 116982868 116983206 + 0.5 NA intron (NM_001172811, intron 2 of 9) intron (NM_001172811, intron 2 of 9) 32062 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 140.833-11 chr11 21946498 21946865 + 0.5 NA Intergenic Intergenic -246404 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 142.167-4 chr1 154810118 154810461 + 0.5 NA intron (NM_170782, intron 2 of 7) intron (NM_170782, intron 2 of 7) 49587 NM_170782 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 166.667-43 chr5 76166094 76166702 + 0.5 NA intron (NM_014979, intron 2 of 12) intron (NM_014979, intron 2 of 12) 83015 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 150.5-21 chr13 61383147 61383661 + 0.5 NA Intergenic L2|LINE|L2 32118 NM_022843 64881 Hs.391781 NM_022843 ENSG00000280165 PCDH20 PCDH13 protocadherin 20 protein-coding 151.667-69 chr5 135793553 135794056 + 0.5 NA intron (NM_001349335, intron 3 of 10) SATR2|Satellite|Satellite 9271 NR_049867 100847082 NR_049867 ENSG00000265924 MIR5692C1 - microRNA 5692c-1 ncRNA 114.167-24 chr12 70084050 70084509 + 0.5 NA Intergenic L1ME2|LINE|L1 -158751 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 117.5-24 chr2 30473908 30474290 + 0.5 NA intron (NM_182551, intron 2 of 6) LTR37A|LTR|ERV1 26853 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 119.5-7 chr1 116825437 116825709 + 0.5 NA Intergenic Intergenic 71143 NM_001328609 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 176.667-70 chr7 17348667 17349071 + 0.5 NA Intergenic L1PA7|LINE|L1 -26048 NR_110014 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 162.667-16 chr13 44009670 44010101 + 0.5 NA Intergenic Intergenic -12450 NR_026955 121838 Hs.201441 NR_026955 LINC00284 NCRNA00284 long intergenic non-protein coding RNA 284 ncRNA 176 chr1 51230174 51230774 + 0.5 NA intron (NR_147076, intron 1 of 1) LTR17|LTR|ERV1 4622 NR_147076 105378716 NR_147076 ENSG00000203356 LINC01562 - long intergenic non-protein coding RNA 1562 ncRNA 131.5-89 chr9 92449924 92450297 + 0.5 NA intron (NM_001286969, intron 4 of 6) L1PA3|LINE|L1 -25556 NM_005014 4958 Hs.94070 NM_005014 ENSG00000127083 OMD OSAD|SLRR2C osteomodulin protein-coding 142.333-63 chr20 54262659 54263010 + 0.5 NA Intergenic Intergenic 54747 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 162-17 chr12 43415027 43415468 + 0.5 NA intron (NM_025003, intron 28 of 38) L1ME3A|LINE|L1 136956 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 117-88 chr5 54319341 54319635 + 0.5 NA Intergenic MIR|SINE|MIR -1456 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 148.5-63 chr6 168145956 168146653 + 0.5 NA Intergenic L1MA2|LINE|L1 -64747 NR_110312 79981 Hs.266746 NM_024919 ENSG00000153303 FRMD1 bA164L23.1 FERM domain containing 1 protein-coding 127.167-31 chr14 58351910 58352293 + 0.5 NA intron (NM_002892, intron 16 of 23) intron (NM_002892, intron 16 of 23) -43829 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 162.167-29 chr22 40071542 40072064 + 0.5 NA intron (NM_001024843, intron 1 of 23) intron (NM_001024843, intron 1 of 23) 26986 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 174.667-47 chr4 188049442 188049842 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 53871 NM_001304358 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 152 chr1 16617142 16617646 + 0.5 NA TTS (NR_026752) TTS (NR_026752) -3789 NM_017940 55672 Hs.467587 NM_017940 ENSG00000219481 NBPF1 AB13|AB14|AB23|AD2|NBG|NBPF NBPF member 1 protein-coding 136.667-98 chr7 119166293 119166725 + 0.5 NA Intergenic L1MA4A|LINE|L1 740866 NR_131963 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 191-19 chr18 5449915 5450366 + 0.5 NA intron (NM_001281535, intron 5 of 21) L1MC2|LINE|L1 90416 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 121-32 chr16 76082310 76082622 + 0.5 NA Intergenic Intergenic -194935 NM_001322179 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 155.833-20 chr15 38652541 38652962 + 0.5 NA Intergenic Intergenic -43847 NR_160786 153-43 chr4 100899740 100900383 + 0.5 NA Intergenic Charlie7|DNA|hAT-Charlie -224948 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 147.167-39 chr20 55699351 55699897 + 0.5 NA Intergenic Intergenic -272427 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 115.833-49 chr3 126267786 126268128 + 0.5 NA Intergenic MIR|SINE|MIR -86771 NM_001270364 10840 Hs.434435 NM_012190 ENSG00000144908 ALDH1L1 10-FTHFDH|10-fTHF|FDH|FTHFD aldehyde dehydrogenase 1 family member L1 protein-coding 140.667-44 chr2 143736269 143736584 + 0.5 NA intron (NM_018460, intron 13 of 13) intron (NM_018460, intron 13 of 13) -200641 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 136.5-29 chr13 104907011 104907497 + 0.5 NA Intergenic L1ME5|LINE|L1 -558613 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 140.667-9 chr10 50434959 50435430 + 0.5 NA intron (NM_147156, intron 5 of 10) MIRb|SINE|MIR -186584 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 146.5-52 chr22 50092326 50092742 + 0.5 NA intron (NM_018995, intron 2 of 26) AluJb|SINE|Alu 2278 NM_001164105 54456 Hs.62880 NM_018995 ENSG00000073146 MOV10L1 CHAMP|DJ402G11.8 Mov10 like RISC complex RNA helicase 1 protein-coding 115.667-104 chr6 38753905 38754350 + 0.5 NA intron (NM_001371, intron 8 of 91) intron (NM_001371, intron 8 of 91) 38816 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 138-27 chr12 115125801 115126158 + 0.5 NA Intergenic LTR33|LTR|ERVL -441804 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 154.5-36 chr2 64694609 64695019 + 0.5 NA Intergenic L1MEf|LINE|L1 -40901 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 229.167-8 chr11 55226548 55227429 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -35167 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 135.833-40 chr20 31997158 31997670 + 0.5 NA exon (NM_001011718, exon 3 of 3) exon (NM_001011718, exon 3 of 3) -13024 NM_080625 140706 Hs.382151 NM_080625 ENSG00000101331 CCM2L C20orf160|dJ310O13.5 CCM2 like scaffold protein protein-coding 122.5-33 chr14 71919500 71919827 + 0.5 NA Intergenic LTR82B|LTR|ERVL -12508 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 147.667-35 chr20 41049331 41049864 + 0.5 NA intron (NM_003286, intron 2 of 20) intron (NM_003286, intron 2 of 20) 20775 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 163.167-14 chr15 94303159 94303700 + 0.5 NA intron (NM_018349, intron 1 of 21) MLT2A1|LTR|ERVL 5228 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 203.167-4 chr10 55576775 55577287 + 0.5 NA intron (NM_001354404, intron 2 of 34) AluSx4|SINE|Alu -22011 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 128.167-50 chr3 42454025 42454382 + 0.5 NA Intergenic Intergenic -35096 NM_001251882 7433 Hs.348500 NM_004624 ENSG00000114812 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 121.833-41 chr22 29834212 29834501 + 0.5 NA intron (NM_001369921, intron 2 of 21) L2b|LINE|L2 3918 NM_001369924 84164 Hs.731754 NM_032204 ENSG00000100325 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 114.833-71 chr8 76026691 76027115 + 0.5 NA Intergenic Intergenic -379751 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 130.5-2 chr1 79291859 79292207 + 0.5 NA Intergenic Intergenic -285303 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 115.333-37 chr15 92000523 92001114 + 0.5 NA intron (NR_135775, intron 2 of 10) intron (NR_135775, intron 2 of 10) 146514 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 192.667-28 chr20 2626538 2627169 + 0.5 NA intron (NM_080751, intron 17 of 19) LTR3B|LTR|ERVK -25779 NR_145428 10528 Hs.376064 NM_006392 ENSG00000101361 NOP56 NOL5A|SCA36 NOP56 ribonucleoprotein protein-coding 146.5-41 chr2 15078340 15078810 + 0.5 NA Intergenic Intergenic 445858 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 119.167-29 chr17 47898256 47898512 + 0.5 NA TTS (NR_103856) TTS (NR_103856) 2148 NM_003110 6668 Hs.514276 NM_003110 ENSG00000167182 SP2 - Sp2 transcription factor protein-coding 132.333-24 chr12 14575936 14576564 + 0.5 NA intron (NR_120465, intron 2 of 5) L1M6|LINE|L1 -8367 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 116.5-39 chr2 109372435 109372963 + 0.5 NA intron (NM_001099289, intron 3 of 9) MIR|SINE|MIR -59074 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 136.833-13 chr11 100723355 100723707 + 0.5 NA intron (NM_001367945, intron 1 of 25) L1MC2|LINE|L1 -35576 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 155.5-47 chr5 33376310 33376926 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -64078 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 148.5-8 chr10 66054517 66054887 + 0.5 NA intron (NM_001127384, intron 15 of 17) L1MA5|LINE|L1 483277 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 155-48 chr3 19647369 19647915 + 0.5 NA Intergenic Intergenic 286575 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 121.167-39 chr2 48583171 48583462 + 0.5 NA intron (NM_172311, intron 2 of 10) AluJb|SINE|Alu 2729 NM_001198594 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 114-67 chr3 84952574 84952907 + 0.5 NA Intergenic MER3|DNA|hAT-Charlie -6249 NM_001167675 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 169.667-7 chr10 62040071 62040470 + 0.5 NA intron (NM_032199, intron 4 of 9) intron (NM_032199, intron 4 of 9) -9087 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 165.167-16 chr15 37486068 37486549 + 0.5 NA Intergenic Intergenic -384997 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 152-34 chr3 61969748 61970253 + 0.5 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 348947 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 196.667-13 chr14 35068127 35068569 + 0.5 NA intron (NM_001079519, intron 4 of 6) intron (NM_001079519, intron 4 of 6) -12733 NR_110415 101927178 Hs.617139 NR_110415 ENSG00000151327 LOC101927178 - uncharacterized LOC101927178 ncRNA 177-8 chr10 66352024 66352597 + 0.5 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -573726 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 121.333-53 chr2 136512540 136513089 + 0.5 NA Intergenic L1MA8|LINE|L1 -252731 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 201.333 chr1 49703184 49703715 + 0.5 NA intron (NM_001323575, intron 2 of 12) L1ME1|LINE|L1 -231364 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 156-78 chr6 138672020 138672386 + 0.5 NA Intergenic Intergenic -19465 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 140.833-22 chr16 60203145 60203604 + 0.5 NA Intergenic Intergenic 156419 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 114-75 chr4 110955455 110955825 + 0.5 NA Intergenic Intergenic -94993 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 120.5-3 chr1 170975281 170975587 + 0.5 NA intron (NM_001163629, intron 8 of 21) L1PB4|LINE|L1 39900 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 201.5-27 chr3 187856839 187857496 + 0.5 NA Intergenic OldhAT1|DNA|hAT-Ac -111699 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 157-27 chr14 67992067 67992501 + 0.5 NA intron (NM_133509, intron 7 of 10) L3|LINE|CR1 168692 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 145-3 chr1 40713958 40714559 + 0.5 NA intron (NM_001142590, intron 3 of 14) intron (NM_001142590, intron 3 of 14) 4892 NM_001308115 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y subunit gamma protein-coding 129.667-30 chr14 32525842 32526334 + 0.5 NA intron (NM_004274, intron 2 of 13) AluJb|SINE|Alu 196790 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 117.167-37 chr2 30216045 30216415 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -15304 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - LBH regulator of WNT signaling pathway protein-coding 122.833-37 chr17 26962307 26962667 + 0.5 NA Intergenic CpG 126754 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 145.833-61 chr4 127814498 127815038 + 0.5 NA intron (NM_001317383, intron 11 of 17) AluSg|SINE|Alu 31245 NM_001317382 22824 Hs.135554 NM_014278 ENSG00000164070 HSPA4L APG-1|HSPH3|Osp94 heat shock protein family A (Hsp70) member 4 like protein-coding 141.167-12 chr10 71960322 71960791 + 0.5 NA Intergenic HERVK14-int|LTR|ERVK -3839 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 209.5-9 chr13 19248500 19249302 + 0.5 NA Intergenic Intergenic 66868 NR_126054 101928697 Hs.742697 NR_126054 LOC101928697 - uncharacterized LOC101928697 ncRNA 117.667-35 chr12 77919681 77920022 + 0.5 NA intron (NM_001024383, intron 1 of 39) intron (NM_001024383, intron 1 of 39) 88957 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 127.167-25 chr12 57240645 57241044 + 0.5 NA promoter-TSS (NM_020142) promoter-TSS (NM_020142) -152 NM_020142 56901 Hs.75069 NM_020142 ENSG00000185633 NDUFA4L2 NUOMS NDUFA4 mitochondrial complex associated like 2 protein-coding 142.667-86 chr6 34187461 34188070 + 0.5 NA Intergenic L1MEd|LINE|L1 -32143 NM_001256809 2914 Hs.429018 NM_000841 ENSG00000124493 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate metabotropic receptor 4 protein-coding 128.667-63 chr2 46883451 46883741 + 0.5 NA Intergenic AluJb|SINE|Alu 32210 NM_001171509 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 152-50 chr8 102292602 102293094 + 0.5 NA intron (NM_001282873, intron 34 of 58) intron (NM_001282873, intron 34 of 58) 53397 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 143.333-33 chr2 52685869 52686353 + 0.5 NA Intergenic L1PB3|LINE|L1 16504 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 130.167-63 chr5 165978040 165978484 + 0.5 NA Intergenic LTR103_Mam|LTR|ERV1? 948108 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 135.833-8 chr11 111236168 111236666 + 0.5 NA Intergenic L1MC5a|LINE|L1 -9308 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 118.667-65 chr2 196072471 196072953 + 0.5 NA Intergenic L2c|LINE|L2 -3875 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 142.5-57 chr4 183022028 183022486 + 0.5 NA Intergenic AluSx1|SINE|Alu -15408 NR_003612 403315 Hs.652187 NR_003612 ENSG00000230219 FAM92A1P2 FAM92A3 family with sequence similarity 92, member A3 pseudo 171.667-58 chr4 60475542 60476111 + 0.5 NA Intergenic Intergenic -446793 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 146.833-60 chr7 92106087 92106591 + 0.5 NA intron (NM_147185, intron 47 of 49) MIR|SINE|MIR 28138 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 131.5-68 chr6 17788905 17789224 + 0.5 NA intron (NM_001105567, intron 25 of 36) intron (NM_001105567, intron 25 of 36) 82021 NR_134618 105374952 Hs.718703 NR_134616 ENSG00000272269 LOC105374952 - uncharacterized LOC105374952 ncRNA 149.833-49 chr7 26855577 26856011 + 0.5 NA intron (NM_003930, intron 1 of 12) intron (NM_003930, intron 1 of 12) 1929 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 187.5-27 chr21 10737511 10738101 + 0.5 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 216292 NM_199259 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 174.333-58 chr7 17094000 17094508 + 0.5 NA Intergenic Intergenic -204398 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 167-38 chr22 41171962 41172527 + 0.5 NA intron (NM_001429, intron 27 of 30) intron (NM_001429, intron 27 of 30) 25257 NR_110514 101927279 Hs.517517 NR_110514 EP300-AS1 - EP300 antisense RNA 1 ncRNA 166.833-50 chrX 68364579 68365066 + 0.5 NA intron (NM_002547, intron 2 of 24) MER3|DNA|hAT-Charlie 68673 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 225.5-8 chr10 96325454 96325999 + 0.5 NA intron (NM_004088, intron 6 of 10) intron (NM_004088, intron 6 of 10) 21292 NM_001017520 1791 Hs.534206 NM_004088 ENSG00000107447 DNTT TDT DNA nucleotidylexotransferase protein-coding 154.667-9 chr10 60462442 60462829 + 0.5 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -72760 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 116.5-30 chr18 438701 439131 + 0.5 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 61785 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 182-22 chr17 44948526 44949223 + 0.5 NA Intergenic Intergenic -1101 NM_001264573 146909 Hs.135094 NM_001080443 ENSG00000186185 KIF18B - kinesin family member 18B protein-coding 156.5-19 chr11 70434845 70435230 + 0.5 NA exon (NM_138565, exon 17 of 17) exon (NM_138565, exon 17 of 17) 36508 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 127.333-108 chr7 88599607 88599926 + 0.5 NA Intergenic Intergenic -159934 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 143-68 chr5 117835836 117836227 + 0.5 NA intron (NR_104997, intron 1 of 2) L2a|LINE|L2 105670 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 156.167-25 chr14 63712982 63713589 + 0.5 NA intron (NM_030791, intron 1 of 2).2 L2|LINE|L2 14780 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 156.333-81 chr7 1943575 1944241 + 0.5 NA intron (NM_001013837, intron 16 of 18) L1MB7|LINE|L1 -3337 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 119.333-35 chr17 49764420 49764751 + 0.5 NA promoter-TSS (NM_030802) promoter-TSS (NM_030802) -454 NM_030802 81558 Hs.514308 NM_030802 ENSG00000121104 FAM117A - family with sequence similarity 117 member A protein-coding 149.833-15 chr2 27462267 27462720 + 0.5 NA intron (NM_015662, intron 20 of 47) intron (NM_015662, intron 20 of 47) 20112 NM_001321325 200634 Hs.59509 NM_173853 ENSG00000157992 KRTCAP3 KCP3 keratinocyte associated protein 3 protein-coding 116.667-70 chr22 46604143 46604376 + 0.5 NA intron (NM_001366660, intron 1 of 17) L1MC|LINE|L1 -16127 NM_015124 23151 Hs.475150 NM_015124 ENSG00000075240 GRAMD4 DIP GRAM domain containing 4 protein-coding 136.333-73 chr5 30159280 30159638 + 0.5 NA Intergenic Charlie8|DNA|hAT-Charlie 278899 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 117.333-40 chr19 43723281 43723598 + 0.5 NA Intergenic AluSq|SINE|Alu 7363 NM_019612 56269 Hs.515444 NM_019612 ENSG00000124449 IRGC CINEMA|IFGGE|IRGC1|Iigp5|R30953_1 immunity related GTPase cinema protein-coding 115.333-40 chr16 64074916 64075421 + 0.5 NA Intergenic Intergenic 1046895 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 119.833-57 chr3 47635860 47636147 + 0.5 NA intron (NM_003074, intron 23 of 27) intron (NM_003074, intron 23 of 27) 25691 NR_145791 109623484 NR_145791 SNORD146 - small nucleolar RNA, C/D box 146 snoRNA 221-32 chr8 17887680 17888343 + 0.5 NA intron (NM_004467, intron 1 of 7) intron (NM_004467, intron 1 of 7) 7393 NM_201553 2267 Hs.491143 NM_004467 ENSG00000104760 FGL1 HFREP1|HP-041|HPS|LFIRE-1|LFIRE1 fibrinogen like 1 protein-coding 162.667-19 chr13 88560077 88560660 + 0.5 NA Intergenic Intergenic 19539 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 197.167-52 chr6 132278393 132278938 + 0.5 NA Intergenic Intergenic 122810 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 181.333-43 chr4 133471774 133472269 + 0.5 NA Intergenic Intergenic 322727 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 146.333-53 chr2 135742926 135743228 + 0.5 NA promoter-TSS (NR_163478) promoter-TSS (NR_163478) -433 NR_163478 107985946 Hs.591242 NM_001365239 LOC107985946 - uncharacterized LOC107985946 ncRNA 139.333-96 chrX 47346307 47346632 + 0.5 NA Intergenic MER74A|LTR|ERVL -24131 NM_003446 7712 Hs.89897 NM_003446 ENSG00000147117 ZNF157 HZF22 zinc finger protein 157 protein-coding 135.167 chr1 31328001 31328420 + 0.5 NA intron (NM_001282571, intron 3 of 6) Tigger7|DNA|TcMar-Tigger 31228 NM_001282572 51538 Hs.524094 NM_016505 ENSG00000121766 ZCCHC17 HSPC251|PS1D|pNO40 zinc finger CCHC-type containing 17 protein-coding 149.333-4 chr1 84635009 84635527 + 0.5 NA promoter-TSS (NR_027379) promoter-TSS (NR_027379) -248 NR_027379 439927 Hs.407054 NM_001033660 ENSG00000180869 LINC01555 C1orf180 long intergenic non-protein coding RNA 1555 ncRNA 120.833-32 chr2 77784262 77784601 + 0.5 NA intron (NR_110288, intron 3 of 3) L1M5|LINE|L1 -131503 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 113.333-72 chr3 22751886 22752211 + 0.5 NA Intergenic L1MC3|LINE|L1 450530 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 141.5-86 chr8 129610628 129611069 + 0.5 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) -35830 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 159.667-98 chr8 138984136 138984705 + 0.5 NA Intergenic L1ME3|LINE|L1 -70379 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 115.5-53 chr2 150526004 150526366 + 0.5 NA Intergenic MER4B|LTR|ERV1 -38490 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 173-23 chr18 13416170 13416816 + 0.5 NA intron (NM_181482, intron 3 of 5) intron (NM_181482, intron 3 of 5) 11041 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 136.333-33 chr15 97770726 97771247 + 0.5 NA intron (NR_024172, intron 1 of 2) L1ME2|LINE|L1 103443 NR_024173 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 154.667-28 chr15 64427345 64427693 + 0.5 NA intron (NM_001321924, intron 11 of 12) AluSz|SINE|Alu 39683 NM_016213 9325 Hs.500340 NM_016213 ENSG00000103671 TRIP4 ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5 thyroid hormone receptor interactor 4 protein-coding 143-12 chr10 105796568 105797011 + 0.5 NA intron (NR_120625, intron 3 of 3) intron (NR_120625, intron 3 of 3) 23544 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 141-6 chr10 27070765 27071061 + 0.5 NA intron (NM_014915, intron 9 of 33) AluSx3|SINE|Alu 29585 NM_001256053 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 128.667-44 chr15 56866279 56866634 + 0.5 NA Intergenic AluSx3|SINE|Alu -51634 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 201.5-36 chr7 109225768 109226260 + 0.5 NA Intergenic L1ME1|LINE|L1 -341427 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 168.5-18 chr14 70146606 70147277 + 0.5 NA intron (NM_033262, intron 2 of 7) Tigger17a|DNA|TcMar-Tigger -40167 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 127.333-25 chr12 52990148 52990403 + 0.5 NA Intergenic Intergenic -16181 NM_001417 1975 Hs.648394 NM_001417 ENSG00000063046 EIF4B EIF-4B|PRO1843 eukaryotic translation initiation factor 4B protein-coding 118.167-48 chr4 76389373 76389663 + 0.5 NA intron (NM_001042784, intron 3 of 23) L1MA2|LINE|L1 17787 NM_001042784 339965 Hs.529680 NM_178555 ENSG00000163749 CCDC158 - coiled-coil domain containing 158 protein-coding 121.667-38 chr17 64248695 64249144 + 0.5 NA intron (NM_018469, intron 1 of 11) AluSz|SINE|Alu 14341 NM_018469 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 151.5-15 chr10 90614783 90615197 + 0.5 NA Intergenic MER5B|DNA|hAT-Charlie -74185 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 177.833-11 chr15 62450892 62451494 + 0.5 NA Intergenic Intergenic 108164 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 132.5-48 chr2 117818509 117818836 + 0.5 NA intron (NM_006773, intron 2 of 13) (GTTT)n|Simple_repeat|Simple_repeat 3981 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 118.167-43 chr3 54756307 54756744 + 0.5 NA intron (NM_018398, intron 12 of 37) intron (NM_018398, intron 12 of 37) -116668 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 156-57 chr4 47768704 47769228 + 0.5 NA intron (NM_001278585, intron 2 of 19) L1MA8|LINE|L1 -62379 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 154.167-33 chr2 180628968 180629456 + 0.5 NA Intergenic L2b|LINE|L2 -62892 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 114.667-109 chr6 134166368 134166736 + 0.5 NA Intergenic Intergenic 8314 NM_001291995 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 193.334-5 chr7 33918216 33919110 + 0.5 NA intron (NM_133468, intron 3 of 15) intron (NM_133468, intron 3 of 15) 13124 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 114.333-8 chr1 166584861 166585157 + 0.5 NA Intergenic Intergenic -18907 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 175.5-37 chr3 60646445 60646894 + 0.5 NA intron (NM_001320900, intron 5 of 9) intron (NM_001320900, intron 5 of 9) -28799 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 128.667-6 chr1 102648110 102648449 + 0.5 NA Intergenic Intergenic 460217 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 154-28 chr15 98909606 98910247 + 0.5 NA intron (NM_000875, intron 6 of 20) intron (NM_000875, intron 6 of 20) 95730 NM_001102612 145814 Hs.592021 NM_001102612 ENSG00000183571 PGPEP1L - pyroglutamyl-peptidase I like protein-coding 300.167-5 chr3 155672464 155673443 + 0.5 NA intron (NM_001349252, intron 2 of 24) L2b|LINE|L2 3390 NM_001349250 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 156.667-72 chr5 133676950 133677398 + 0.5 NA Intergenic Intergenic -64633 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 119.5-8 chr1 169612819 169613278 + 0.5 NA exon (NM_003005, exon 5 of 17) exon (NM_003005, exon 5 of 17) 17076 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 117.333-14 chr10 32543740 32544102 + 0.5 NA intron (NR_109826, intron 12 of 16) intron (NR_109826, intron 12 of 16) 97781 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 124.834-3 chr2 88370810 88371405 + 0.5 NA Intergenic MER2|DNA|TcMar-Tigger 81586 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 134.333-75 chr3 55756422 55756952 + 0.5 NA intron (NR_132749, intron 13 of 17) intron (NR_132749, intron 13 of 17) 95907 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 116.333-90 chr6 21626901 21627229 + 0.5 NA Intergenic Intergenic 33314 NM_003107 6659 Hs.643910 NM_003107 ENSG00000124766 SOX4 EVI16 SRY-box transcription factor 4 protein-coding 148.5-46 chr3 51219501 51220021 + 0.5 NA intron (NM_004947, intron 14 of 52) intron (NM_004947, intron 14 of 52) -165530 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 123.667-110 chr8 108019080 108019389 + 0.5 NA intron (NM_178565, intron 2 of 5) AluSz6|SINE|Alu 62705 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 133.833-8 chr10 51324181 51324538 + 0.5 NA intron (NM_001098512, intron 2 of 17) L1MA4|LINE|L1 24786 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 142.333-87 chr6 62836253 62836853 + 0.5 NA Intergenic SATR1|Satellite|Satellite 483424 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 147-74 chr6 33504569 33504866 + 0.5 NA Intergenic L1MEd|LINE|L1 50141 NM_152735 221504 Hs.591805 NM_152735 ENSG00000213588 ZBTB9 ZNF919 zinc finger and BTB domain containing 9 protein-coding 215.333-24 chr2 74177384 74178075 + 0.5 NA intron (NM_001317112, intron 1 of 4) intron (NM_001317112, intron 1 of 4) 585 NM_001317111 55233 Hs.602092 NM_018221 ENSG00000114978 MOB1A C2orf6|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B MOB kinase activator 1A protein-coding 143-17 chr12 26653050 26653561 + 0.5 NA intron (NM_002223, intron 21 of 56) AluSc5|SINE|Alu 179889 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 137-92 chr8 56480353 56480870 + 0.5 NA intron (NR_125813, intron 1 of 3) L1M5|LINE|L1 -33970 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 190.5-53 chr8 142066383 142066885 + 0.5 NA Intergenic Intergenic -109705 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 142.667-66 chr3 3951530 3951964 + 0.5 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -150872 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 148.333-91 chr7 43665101 43665514 + 0.5 NA intron (NM_001371308, intron 1 of 7) intron (NM_001371308, intron 1 of 7) 64216 NM_001371309 152.167-50 chr4 91418609 91418978 + 0.5 NA intron (NM_001145065, intron 10 of 10) L1MA9|LINE|L1 858509 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 122.333-32 chr14 43164380 43164754 + 0.5 NA Intergenic Intergenic 1342716 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 120.333-114 chr8 46766143 46766678 + 0.5 NA Intergenic Intergenic -74476 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 116.333-50 chr2 30419437 30419920 + 0.5 NA Intergenic AluJr|SINE|Alu -27568 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 154.333-41 chr2 115070318 115070893 + 0.5 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 6032 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 141.167-78 chr9 85185444 85185870 + 0.5 NA Intergenic MLT1F1|LTR|ERVL-MaLR 479756 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 120.333-50 chr18 31260882 31261198 + 0.5 NA Intergenic HAL1|LINE|L1 -57120 NM_001942 1828 Hs.2633 NM_001942 ENSG00000134760 DSG1 CDHF4|DG1|DSG|EPKHE|EPKHIA|PPKS1|SPPK1 desmoglein 1 protein-coding 115.167-11 chr1 151813735 151814014 + 0.5 NA intron (NM_005060, intron 6 of 10) intron (NM_005060, intron 6 of 10) -8432 NM_001004432 339398 Hs.591477 NM_001004432 ENSG00000213171 LINGO4 DAAT9248|LRRN6D|PRO34002 leucine rich repeat and Ig domain containing 4 protein-coding 127.667-27 chr14 71345266 71345827 + 0.5 NA intron (NM_001354285, intron 2 of 24) intron (NM_001354285, intron 2 of 24) 25070 NM_001284245 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 145.167-78 chr8 139525671 139526101 + 0.5 NA Intergenic Intergenic 177237 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 143-80 chr8 117143999 117144533 + 0.5 NA intron (NM_173851, intron 1 of 7) intron (NM_173851, intron 1 of 7) 9271 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 167.667-19 chr12 21758782 21759157 + 0.5 NA Intergenic Intergenic 15737 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 146.833-24 chr16 74064032 74064619 + 0.5 NA Intergenic Intergenic 151196 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 272.834-2 chr22 24451875 24452887 + 0.5 NA intron (NR_028483, intron 4 of 7) L1ME3Cz|LINE|L1 20262 NM_001278497 135 Hs.197029 NM_000675 ENSG00000128271 ADORA2A A2aR|ADORA2|RDC8 adenosine A2a receptor protein-coding 119.833-30 chr15 91616225 91616653 + 0.5 NA Intergenic AluY|SINE|Alu 153100 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 125.667-93 chr5 10865410 10865852 + 0.5 NA Intergenic AluSq2|SINE|Alu -104397 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 159.5-43 chr5 149651795 149652380 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 70589 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 130.167-28 chr2 24252154 24252508 + 0.5 NA intron (NM_001348182, intron 24 of 38) intron (NM_001348182, intron 24 of 38) 77278 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 117.667-89 chr4 58325091 58325449 + 0.5 NA Intergenic Intergenic 211058 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 124-40 chr16 66504785 66505185 + 0.5 NA Intergenic L1MC4a|LINE|L1 -28583 NR_109960 101927726 Hs.739193 NR_109960 ENSG00000261656 BEAN1-AS1 CTD-2258A20.5 BEAN1 antisense RNA 1 ncRNA 129.667-50 chr2 105628795 105629136 + 0.5 NA Intergenic Intergenic -18406 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 165.667-43 chr3 23829738 23830534 + 0.5 NA intron (NM_003341, intron 3 of 5) intron (NM_003341, intron 3 of 5) 19682 NM_001202476 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 173-60 chr9 132309744 132310299 + 0.5 NA intron (NM_001351527, intron 11 of 25) intron (NM_001351527, intron 11 of 25) 44835 NM_001351527 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 217-29 chr5 36262668 36263449 + 0.5 NA intron (NM_001323279, intron 5 of 12) Charlie21a|DNA|hAT-Charlie -20779 NM_153013 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 162.5-49 chr3 88910517 88911083 + 0.5 NA Intergenic L2c|LINE|L2 -196821 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 158.333 chr1 41603912 41604384 + 0.5 NA intron (NM_024503, intron 3 of 8) L1ME3|LINE|L1 -119465 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 163.333-20 chr13 85753354 85753945 + 0.5 NA Intergenic Intergenic 45770 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 115.667-113 chr7 107965670 107966015 + 0.5 NA intron (NM_002291, intron 13 of 33) AluSz|SINE|Alu 37319 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 168.667-65 chr5 121983097 121983627 + 0.5 NA intron (NM_152546, intron 3 of 7) intron (NM_152546, intron 3 of 7) 21387 NM_152546 153443 Hs.107622 NM_152546 ENSG00000151304 SRFBP1 BUD22|P49|Rlb1|STRAP|p49/STRAP serum response factor binding protein 1 protein-coding 158.167-6 chr12 61918093 61918610 + 0.5 NA intron (NM_178539, intron 1 of 4) L1MA3|LINE|L1 274488 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 117.667-133 chrX 42854735 42855071 + 0.5 NA Intergenic Intergenic -76740 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 172.667-18 chr12 1227168 1227805 + 0.5 NA intron (NR_027948, intron 12 of 19) L1MA9|LINE|L1 199738 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 165.5-6 chr10 79476684 79477165 + 0.5 NA Intergenic L1MC3|LINE|L1 -31300 NM_153367 219654 Hs.523080 NM_153367 ENSG00000165424 ZCCHC24 C10orf56|Z3CXXC8 zinc finger CCHC-type containing 24 protein-coding 151.333-68 chr4 71977537 71978131 + 0.5 NA Intergenic Intergenic -53970 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 122.333-98 chr6 141502710 141503052 + 0.5 NA Intergenic Intergenic 585918 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 127.5-48 chr3 186286736 186287102 + 0.5 NA intron (NM_001346, intron 6 of 24) AluSq|SINE|Alu 75315 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 156.167-48 chr5 61213885 61214275 + 0.5 NA intron (NR_109908, intron 3 of 3) intron (NR_109908, intron 3 of 3) 50849 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 141.667-46 chr2 51173506 51174121 + 0.5 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 141212 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 163.333-26 chr14 70693329 70693804 + 0.5 NA Intergenic Intergenic -5132 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 127.667-43 chr2 105322021 105322522 + 0.5 NA intron (NR_137328, intron 1 of 12) Tigger3b|DNA|TcMar-Tigger 7385 NR_137328 9392 Hs.446350 NM_004257 ENSG00000135966 TGFBRAP1 TRAP-1|TRAP1|VPS3 transforming growth factor beta receptor associated protein 1 protein-coding 116.833-43 chr4 98047454 98047786 + 0.5 NA intron (NM_174952, intron 5 of 10) L1M3de|LINE|L1 95856 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 146.833-66 chr9 34968891 34969357 + 0.5 NA intron (NM_015297, intron 1 of 7) L2c|LINE|L2 10839 NR_136308 23349 Hs.7989 NM_015297 ENSG00000122733 PHF24 - PHD finger protein 24 protein-coding 170.5-24 chr18 41469827 41470410 + 0.5 NA Intergenic Intergenic 50559 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 147.333-88 chr8 71718132 71718558 + 0.5 NA Intergenic Charlie16a|DNA|hAT-Charlie -124778 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 127.5-32 chr2 27588746 27589096 + 0.5 NA intron (NM_001271286, intron 2 of 12) L1ME1|LINE|L1 5879 NM_032434 84450 Hs.529178 NM_032434 ENSG00000243943 ZNF512 - zinc finger protein 512 protein-coding 129-59 chr3 157934525 157934896 + 0.5 NA Intergenic L1MC4|LINE|L1 171453 NM_006884 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 137.167-7 chr1 246844970 246845346 + 0.5 NA intron (NM_015446, intron 33 of 35) intron (NM_015446, intron 33 of 35) 55541 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 129.333-59 chr3 30737612 30738041 + 0.5 NA intron (NM_207359, intron 14 of 14) intron (NM_207359, intron 14 of 14) 131225 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 114.833-30 chr18 74698730 74699194 + 0.5 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 67999 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 172.5-59 chr8 106770921 106771433 + 0.5 NA promoter-TSS (NM_139166) promoter-TSS (NM_139166) -933 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 197-10 chr12 15363548 15364115 + 0.5 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 41323 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 113.333-76 chr3 188015061 188015598 + 0.5 NA Intergenic L1MD1|LINE|L1 -38922 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 159.167-36 chr21 34046198 34046877 + 0.5 NA Intergenic L1MEj|LINE|L1 -27041 NM_032476 64968 Hs.302742 NM_032476 ENSG00000243927 MRPS6 C21orf101|MRP-S6|RPMS6|S6mt mitochondrial ribosomal protein S6 protein-coding 132.5-93 chr7 131407863 131408378 + 0.5 NA intron (NM_001321316, intron 6 of 17) MIR|SINE|MIR 80244 NM_013255 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 116-21 chr13 87908622 87909075 + 0.5 NA Intergenic Intergenic -98328 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 122.833-11 chr10 72255624 72255880 + 0.5 NA Intergenic AluSx|SINE|Alu -18172 NM_019058 54541 Hs.744875 NM_019058 ENSG00000168209 DDIT4 Dig2|REDD-1|REDD1 DNA damage inducible transcript 4 protein-coding 132.333-37 chr14 51368415 51368917 + 0.5 NA Intergenic Intergenic 28469 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 141.5-75 chr5 156547584 156547946 + 0.5 NA intron (NM_001128209, intron 3 of 7) intron (NM_001128209, intron 3 of 7) 220601 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 175.5-4 chr1 116383448 116383888 + 0.5 NA intron (NM_001160234, intron 1 of 22) intron (NM_001160234, intron 1 of 22) 298 NM_001160234 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 185.5-4 chr1 163333645 163334252 + 0.5 NA intron (NM_145697, intron 5 of 13) L1PB4|LINE|L1 11994 NM_145697 83540 Hs.651950 NM_031423 ENSG00000143228 NUF2 CDCA1|CT106|NUF2R NUF2 component of NDC80 kinetochore complex protein-coding 129.5-10 chr1 210855763 210856163 + 0.5 NA intron (NM_002238, intron 7 of 10) intron (NM_002238, intron 7 of 10) 277411 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 139.833-65 chr5 138939953 138940300 + 0.5 NA Intergenic AluSx3|SINE|Alu 64726 NM_001323988 1495 Hs.445981 NM_001903 ENSG00000044115 CTNNA1 CAP102|MDPT2 catenin alpha 1 protein-coding 126.833-67 chr8 88154858 88155434 + 0.5 NA intron (NM_005941, intron 4 of 9) intron (NM_005941, intron 4 of 9) 172337 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 119.833-34 chr18 14098748 14099274 + 0.5 NA TTS (NM_145287) TTS (NM_145287) 33424 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 138.5-54 chr4 32350141 32350581 + 0.5 NA promoter-TSS (NR_134672) promoter-TSS (NR_134672) -677 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 172.667-20 chr14 19959948 19960325 + 0.5 NA Intergenic AluYb8|SINE|Alu -15383 NM_001005486 81127 Hs.554583 NM_001005486 ENSG00000169488 OR4K15 OR14-20|OR4K15Q olfactory receptor family 4 subfamily K member 15 protein-coding 126.167-8 chr1 210093178 210093524 + 0.5 NA intron (NM_153262, intron 4 of 7) intron (NM_153262, intron 4 of 7) -139445 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 173.833-25 chr19 40415413 40416111 + 0.5 NA Intergenic L2b|LINE|L2 -2398 NM_181882 57716 Hs.205457 NM_020956 ENSG00000105227 PRX CMT4F periaxin protein-coding 116.333-79 chr5 40963090 40963333 + 0.5 NA intron (NM_000587, intron 13 of 17) MER5B|DNA|hAT-Charlie 53714 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 113.833-15 chr12 106450875 106451353 + 0.5 NA intron (NM_001160708, intron 19 of 27) L1ME1|LINE|L1 93032 NM_001160708 55703 Hs.62696 NM_018082 ENSG00000013503 POLR3B C128|HLD8|INMAP|RPC2 RNA polymerase III subunit B protein-coding 169-55 chr7 46872634 46873098 + 0.5 NA Intergenic L1ME3A|LINE|L1 -175744 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 121-40 chr17 69105482 69106021 + 0.5 NA intron (NM_080284, intron 19 of 38) intron (NM_080284, intron 19 of 38) -6119 NR_039750 100616316 NR_039750 ENSG00000283385 MIR4524A MIR4524|hsa-mir-4524a|mir-4524a microRNA 4524a ncRNA 184.5-36 chr4 78464587 78465188 + 0.5 NA intron (NM_025074, intron 49 of 73) intron (NM_025074, intron 49 of 73) -86883 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 148.833-46 chr4 118968188 118968782 + 0.5 NA intron (NM_001128934, intron 1 of 4) intron (NM_001128934, intron 1 of 4) 79631 NM_001128933 171024 Hs.655519 NM_133477 ENSG00000172403 SYNPO2 - synaptopodin 2 protein-coding 118.5-49 chr2 14260026 14260407 + 0.5 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 140742 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 117.833-23 chr13 18211752 18212205 + 0.5 NA intron (NR_027278, intron 1 of 7) HSATI|Satellite|Satellite 16681 NR_027278 26080 Hs.448583 NR_027278 ENSG00000279516 FAM230C LINC00281|NCRNA00281 family with sequence similarity 230 member C ncRNA 139.167-32 chr17 58348865 58349314 + 0.5 NA intron (NR_073470, intron 2 of 4) L1MB3|LINE|L1 3112 NR_073470 6827 Hs.439481 NM_003168 ENSG00000213246 SUPT4H1 SPT4|SPT4H|SUPT4H|Supt4a SPT4 homolog, DSIF elongation factor subunit protein-coding 137.167-17 chr14 23433292 23433754 + 0.5 NA intron (NM_000257, intron 3 of 39) intron (NM_000257, intron 3 of 39) 2137 NM_000257 4625 Hs.719946 NM_000257 ENSG00000092054 MYH7 CMD1S|CMH1|MPD1|MYHCB|SPMD|SPMM myosin heavy chain 7 protein-coding 131-61 chr6 50784979 50785319 + 0.5 NA Intergenic AluJr|SINE|Alu -33722 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 191.5-4 chr1 217931997 217932762 + 0.5 NA Intergenic Intergenic 39479 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 160.833-14 chr11 69479329 69479792 + 0.5 NA Intergenic Intergenic -6001 NR_120542 101928292 Hs.736219 NR_120542 LINC01488 BRCAT8 long intergenic non-protein coding RNA 1488 ncRNA 217.667-34 chr5 95080389 95080985 + 0.5 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) 1179 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 148.167-80 chr8 43252549 43252951 + 0.5 NA Intergenic Intergenic -39692 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 117.333-87 chr5 78887706 78887999 + 0.5 NA intron (NM_198709, intron 5 of 7) intron (NM_198709, intron 5 of 7) 97458 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 167.667-51 chr2 221643630 221644126 + 0.5 NA Intergenic Intergenic -69676 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 152.333-8 chr10 111367895 111368291 + 0.5 NA Intergenic Intergenic 253802 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 136.167-25 chr16 54783845 54784325 + 0.5 NA Intergenic Intergenic 64148 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 137.333-17 chr11 112654136 112654590 + 0.5 NA Intergenic LTR16A|LTR|ERVL -98561 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 150.667-14 chr10 97517349 97517956 + 0.5 NA intron (NM_024954, intron 1 of 2) intron (NM_024954, intron 1 of 2) 18728 NM_024954 80019 Hs.500724 NM_024954 ENSG00000165886 UBTD1 - ubiquitin domain containing 1 protein-coding 128.833-13 chr1 237827972 237828397 + 0.5 NA intron (NM_001035, intron 101 of 104) intron (NM_001035, intron 101 of 104) -33991 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 187.167-16 chr2 73568255 73568987 + 0.5 NA intron (NM_015120, intron 15 of 22) intron (NM_015120, intron 15 of 22) 73801 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 142.167-3 chr1 110235889 110236236 + 0.5 NA 3' UTR (NM_004978, exon 4 of 4) 3' UTR (NM_004978, exon 4 of 4) 25748 NR_036437 3749 Hs.153521 NM_004978 ENSG00000116396 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel subfamily C member 4 protein-coding 141.333-17 chr11 115553923 115554286 + 0.5 NA Intergenic AluSx1|SINE|Alu -49689 NM_001301043 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 117.667-90 chr4 60596797 60597135 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -325653 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 142.167-69 chr6 60687488 60688014 + 0.5 NA Intergenic Intergenic -886379 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 196.833-22 chr7 112007711 112008393 + 0.5 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 198347 NM_014705 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 189-18 chr2 187450578 187451019 + 0.5 NA Intergenic Intergenic -2546 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 165.5-36 chr20 2454238 2454716 + 0.5 NA Intergenic AluSz|SINE|Alu 8570 NR_003684 100113378 NR_003684 SNORD119 - small nucleolar RNA, C/D box 119 snoRNA 120.667-122 chrX 137627382 137627709 + 0.5 NA Intergenic Intergenic 61418 NM_001330661 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 150.333-42 chr15 63932341 63932961 + 0.5 NA non-coding (NR_120344, exon 3 of 4) non-coding (NR_120344, exon 3 of 4) 4377 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 123.833-37 chr3 20236158 20236492 + 0.5 NA Intergenic AluSp|SINE|Alu -50092 NM_001012411 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 164.334-6 chr2 173468024 173468773 + 0.5 NA Intergenic L1MA8|LINE|L1 113526 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 124.667-15 chr10 78241107 78241556 + 0.5 NA Intergenic L1MC4|LINE|L1 -7294 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 164.5-36 chr2 138121757 138122331 + 0.5 NA Intergenic Intergenic 20160 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 119.333-122 chr9 102608842 102609231 + 0.5 NA intron (NR_103830, intron 3 of 4) intron (NR_103830, intron 3 of 4) 89399 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 124.667-49 chr17 70194228 70194736 + 0.5 NA Intergenic Intergenic 24947 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 160.167-6 chr10 67123424 67123959 + 0.5 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 111425 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 138.333-72 chr3 63221275 63221616 + 0.5 NA Intergenic Intergenic -56863 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 147.5-5 chr1 158358107 158358434 + 0.5 NA TTS (NM_001042584) TTS (NM_001042584) 4376 NM_001185107 913 Hs.249217 NM_030893 ENSG00000158488 CD1E CD1A|R2 CD1e molecule protein-coding 170.667-81 chr8 137349050 137349618 + 0.5 NA Intergenic L1PA14|LINE|L1 64254 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 156.333-48 chr2 167795248 167795665 + 0.5 NA Intergenic Intergenic -23216 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 162.167-22 chr2 112568072 112568517 + 0.5 NA intron (NM_019014, intron 11 of 14) intron (NM_019014, intron 11 of 14) -16153 NM_001304353 84269 Hs.375707 NM_032309 ENSG00000125611 CHCHD5 C2orf9|CHTM1|MIC14|MIX14 coiled-coil-helix-coiled-coil-helix domain containing 5 protein-coding 149.833-57 chr8 98988724 98989358 + 0.5 NA Intergenic Intergenic -24225 NM_017890 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 134.833-32 chr2 222570461 222570959 + 0.5 NA non-coding (NR_130154, exon 18 of 18) non-coding (NR_130154, exon 18 of 18) 85382 NR_130154 10056 Hs.471452 NM_005687 ENSG00000116120 FARSB FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC phenylalanyl-tRNA synthetase subunit beta protein-coding 115.833-61 chr5 104564584 104564966 + 0.5 NA Intergenic Intergenic -534699 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 165.333-69 chr8 13401800 13402244 + 0.5 NA intron (NM_024767, intron 2 of 4) intron (NM_024767, intron 2 of 4) 112829 NM_182643 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 155.167-7 chr10 118785246 118785654 + 0.5 NA Intergenic AluJo|SINE|Alu -30480 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 174.333-42 chr4 169418554 169419200 + 0.5 NA intron (NM_001199400, intron 28 of 32) L1MEc|LINE|L1 -147921 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 124.167-68 chr4 163918139 163918468 + 0.5 NA intron (NM_001166373, intron 2 of 7) L1MC|LINE|L1 279408 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 168.333-60 chr8 133186527 133186954 + 0.5 NA Intergenic Intergenic -4299 NR_037944 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 121-24 chr14 45212246 45212561 + 0.5 NA intron (NM_018353, intron 13 of 16) MER50|LTR|ERV1 40799 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 124.5-80 chr9 15901666 15902174 + 0.5 NA intron (NM_001355547, intron 23 of 24) Charlie7|DNA|hAT-Charlie 337942 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 199.833-2 chr10 50874152 50874730 + 0.5 NA intron (NM_001198818, intron 1 of 13) intron (NM_001198818, intron 1 of 13) 11186 NM_001370131 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 138.5-45 chr2 212728364 212728676 + 0.5 NA Intergenic L1M5|LINE|L1 -66811 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 150.833-54 chr8 139751074 139751743 + 0.5 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -48285 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 143.833-43 chr6 153423968 153424366 + 0.5 NA Intergenic Intergenic -292885 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 130-57 chr2 173330522 173330960 + 0.5 NA Intergenic L1MD1|LINE|L1 -24131 NM_031942 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 133-96 chr8 101272359 101272770 + 0.5 NA Intergenic L2c|LINE|L2 -66500 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 122.167-47 chr3 119732507 119732913 + 0.5 NA intron (NM_033364, intron 9 of 17) L1M|LINE|L1 29688 NM_001320317 89876 Hs.341906 NM_033364 ENSG00000183833 MAATS1 AAT1|AAT1alpha|C3orf15|CFAP91|CaM-IP2|SPATA26 MYCBP associated and testis expressed 1 protein-coding 202.334 chr13 53022240 53023105 + 0.5 NA Intergenic Intergenic -6141 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 148.167-34 chr2 24618270 24618650 + 0.5 NA intron (NM_001362950, intron 3 of 23) intron (NM_001362950, intron 3 of 23) 33983 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 180.333-9 chr10 28153430 28153913 + 0.5 NA intron (NR_134518, intron 2 of 16) intron (NR_134518, intron 2 of 16) -80293 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 123.667-41 chr17 63596276 63596688 + 0.5 NA Intergenic Intergenic -4413 NM_016360 51204 Hs.174134 NM_016360 ENSG00000136463 TACO1 CCDC44 translational activator of cytochrome c oxidase I protein-coding 119.167-23 chr14 87938051 87938631 + 0.5 NA intron (NM_000153, intron 16 of 16) L2a|LINE|L2 54841 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 132.333-60 chr2 200937923 200938224 + 0.5 NA intron (NR_033915, intron 7 of 16) intron (NR_033915, intron 7 of 16) 25587 NR_033915 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 114-109 chr9 110261057 110261528 + 0.5 NA Intergenic MER50B|LTR|ERV1 -4785 NM_003329 7295 Hs.435136 NM_003329 ENSG00000136810 TXN TRDX|TRX|TRX1 thioredoxin protein-coding 193.833-33 chr6 80861454 80861927 + 0.5 NA Intergenic Intergenic 755019 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 116-27 chr15 36904526 36905008 + 0.5 NA intron (NR_051953, intron 8 of 11) intron (NR_051953, intron 8 of 11) -18234 NR_024264 145845 Hs.302693 NM_001101327 LOC145845 - uncharacterized LOC145845 ncRNA 125.333-89 chr4 113314348 113314669 + 0.5 NA intron (NM_001354272, intron 26 of 45) intron (NM_001354272, intron 26 of 45) 21669 NM_001354280 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 181.833-29 chr2 184508236 184508686 + 0.5 NA Intergenic L1MB2|LINE|L1 -90068 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 222-30 chr5 109716828 109717704 + 0.5 NA intron (NM_002372, intron 3 of 21) intron (NM_002372, intron 3 of 21) 27900 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 128.167-85 chr8 100187467 100187937 + 0.5 NA intron (NM_003114, intron 8 of 18) intron (NM_003114, intron 8 of 18) 29367 NM_003114 6674 Hs.591866 NM_003114 ENSG00000104450 SPAG1 CILD28|CT140|HEL-S-268|HSD-3.8|SP75|TPIS sperm associated antigen 1 protein-coding 127.667-41 chr2 72497771 72498250 + 0.5 NA intron (NR_135774, intron 13 of 19) intron (NR_135774, intron 13 of 19) 328023 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 132.5-84 chr6 129944544 129944911 + 0.5 NA Intergenic Intergenic -73642 NM_032438 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 174.333-19 chr15 60500331 60500896 + 0.5 NA intron (NM_134260, intron 10 of 11) X7B_LINE|LINE|CR1 21435 NR_120339 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 114.333-106 chr6 21958969 21959417 + 0.5 NA intron (NR_015410, intron 5 of 11) L3|LINE|CR1 188000 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 165.833-12 chr11 3232191 3232737 + 0.5 NA promoter-TSS (NM_001039165) promoter-TSS (NM_001039165) -47 NM_001039165 116534 Hs.745512 NM_001039165 ENSG00000184350 MRGPRE GPR167|MGRF|MRGE MAS related GPR family member E protein-coding 231.333-5 chr1 194488157 194488724 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 1183695 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 146.833-27 chr2 40734488 40734884 + 0.5 NA Intergenic Intergenic -222251 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 139.5-52 chr5 56921485 56922014 + 0.5 NA 3' UTR (NM_001297599, exon 13 of 13) 3' UTR (NM_001297599, exon 13 of 13) 11687 NM_001323018 133383 Hs.85950 NM_153706 ENSG00000155542 SETD9 C5orf35 SET domain containing 9 protein-coding 142.667-52 chr2 148597550 148597928 + 0.5 NA Intergenic AluSx3|SINE|Alu -47012 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 199-17 chr3 134476806 134477262 + 0.5 NA TTS (NM_001242374) TTS (NM_001242374) -8690 NM_001353110 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 131.5-35 chr2 104058344 104058707 + 0.5 NA Intergenic L1MB4|LINE|L1 349807 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 137.5-14 chr10 38001794 38002199 + 0.5 NA Intergenic L1PA17|LINE|L1 -8654 NM_001278173 7581 Hs.435774 NM_006954 ENSG00000189180 ZNF33A KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK zinc finger protein 33A protein-coding 136-40 chr2 219437989 219438475 + 0.5 NA intron (NM_005876, intron 1 of 40) MIR|SINE|MIR 3389 NM_005876 10290 Hs.21639 NM_005876 ENSG00000072195 SPEG APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta striated muscle enriched protein kinase protein-coding 220.833-10 chr22 49912458 49913029 + 0.5 NA intron (NM_024105, intron 3 of 9) AluJr|SINE|Alu 5695 NM_024105 79087 Hs.526711 NM_024105 ENSG00000182858 ALG12 CDG1G|ECM39|PP14673|hALG12 ALG12 alpha-1,6-mannosyltransferase protein-coding 155.833-4 chr1 112562568 112562930 + 0.5 NA intron (NM_017744, intron 11 of 14) L2c|LINE|L2 53784 NM_024494 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 198.5-23 chr2 58927834 58928266 + 0.5 NA intron (NR_033873, intron 6 of 13) Tigger15a|DNA|TcMar-Tigger -289658 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 121.333-55 chr20 11357931 11358257 + 0.5 NA Intergenic Intergenic -84711 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 159.667-57 chr3 5690610 5691082 + 0.5 NA Intergenic Intergenic -440591 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 130.167-51 chr3 142080787 142081171 + 0.5 NA intron (NM_001178138, intron 3 of 13) L1MA3|LINE|L1 -52353 NM_006286 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 168.333-27 chr2 53912990 53913438 + 0.5 NA intron (NM_014614, intron 20 of 46) intron (NM_014614, intron 20 of 46) -53181 NM_001164165 100302652 Hs.40763 NM_001164165 ENSG00000270898 GPR75-ASB3 ASB-3|ASB3 GPR75-ASB3 readthrough protein-coding 122-57 chr3 186950018 186950405 + 0.5 NA intron (NM_173216, intron 1 of 7) intron (NM_173216, intron 1 of 7) 19685 NM_173216 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 127.167-14 chr10 41887111 41887725 + 0.5 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 480627 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 146.667-51 chr2 66592102 66592686 + 0.5 NA intron (NR_110156, intron 1 of 5) AluYm1|SINE|Alu 18364 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 146-60 chr6 50140164 50140612 + 0.5 NA Intergenic Intergenic -90459 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 123.5-13 chr10 76489358 76489679 + 0.5 NA intron (NM_001305581, intron 6 of 6) L1M1|LINE|L1 -398526 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 117.167-47 chr2 125071961 125072325 + 0.5 NA Intergenic L1M2|LINE|L1 1045842 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 135.333-64 chr5 79106918 79107204 + 0.5 NA Intergenic MIRb|SINE|MIR -4748 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 151.667-24 chr15 39246511 39247026 + 0.5 NA Intergenic Intergenic -3901 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 155.5-2 chr1 84499943 84500611 + 0.5 NA intron (NM_005274, intron 3 of 3) intron (NM_005274, intron 3 of 3) -6109 NM_001310156 100505741 Hs.584956 NM_022354 ENSG00000122432 SPATA1 SP-2|SPAP1 spermatogenesis associated 1 protein-coding 182.667-54 chr7 63984945 63985507 + 0.5 NA Intergenic L1M1|LINE|L1 -13580 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 153.167-50 chr6 91906019 91906570 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -215866 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 137.833-47 chr7 2076156 2076531 + 0.5 NA intron (NM_001013837, intron 11 of 18) MLT1A0|LTR|ERVL-MaLR 12709 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 119.833-88 chr8 130192706 130192955 + 0.5 NA intron (NM_001362925, intron 5 of 29) L2a|LINE|L2 103703 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 113.5-72 chr5 27270817 27271183 + 0.5 NA Intergenic L1ME4b|LINE|L1 -201292 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 145.167-76 chr8 104512107 104512432 + 0.5 NA intron (NM_001135703, intron 1 of 5) AluSc|SINE|Alu -27804 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 122.833-82 chr7 52940516 52940819 + 0.5 NA Intergenic Intergenic -94966 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 119.167-5 chr1 108653296 108653707 + 0.5 NA intron (NM_001102592, intron 5 of 7) L1MA5|LINE|L1 7592 NM_001102592 113802 Hs.7962 NM_144584 ENSG00000162639 HENMT1 C1orf59|HEN1 HEN methyltransferase 1 protein-coding 166.167-25 chr2 121868618 121869328 + 0.5 NA Intergenic Intergenic 113322 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 175-12 chr10 83481959 83482675 + 0.5 NA Intergenic L1MB2|LINE|L1 194772 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 186.167-35 chr5 146119854 146120396 + 0.5 NA intron (NM_016460, intron 30 of 30) MIRc|SINE|MIR -14548 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 146-49 chr3 42330184 42330703 + 0.5 NA Intergenic L1M5|LINE|L1 -64258 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 134.667-85 chr5 88860709 88861253 + 0.5 NA intron (NM_001131005, intron 2 of 10) intron (NM_001131005, intron 2 of 10) 22203 NM_001364347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 153.5-74 chr8 59076033 59076499 + 0.5 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 42881 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 139.667-17 chr11 93093365 93093748 + 0.5 NA Intergenic Intergenic 103870 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 145.667-40 chr16 62941045 62941520 + 0.5 NA Intergenic Intergenic -904844 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 158.167-12 chr15 82941297 82941667 + 0.5 NA intron (NM_004839, intron 1 of 8) intron (NM_004839, intron 1 of 8) 11238 NM_199330 9455 Hs.578443 NM_004839 ENSG00000103942 HOMER2 ACPD|CPD|DFNA68|HOMER-2|VESL-2 homer scaffold protein 2 protein-coding 134.833-53 chr5 105550427 105550785 + 0.5 NA Intergenic Intergenic 451132 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 119.333-47 chr2 16319501 16319804 + 0.5 NA Intergenic Intergenic 269225 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 133.667-45 chr18 3113864 3114381 + 0.5 NA intron (NM_019856, intron 20 of 36) intron (NM_019856, intron 20 of 36) -102175 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 140.667-32 chr15 57630908 57631524 + 0.5 NA intron (NM_001018100, intron 6 of 12) L2a|LINE|L2 39312 NM_152451 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 141.833-5 chr10 43999513 43999947 + 0.5 NA Intergenic Intergenic 87328 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 163.5-49 chr3 187454258 187454840 + 0.5 NA Intergenic Intergenic 7503 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 128.167-88 chr8 129351691 129352181 + 0.5 NA non-coding (NR_130919, exon 4 of 4) non-coding (NR_130919, exon 4 of 4) -110696 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 136-55 chr4 43987145 43987539 + 0.5 NA Intergenic Intergenic -29519 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 124-85 chr7 5463009 5463402 + 0.5 NA intron (NM_001363441, intron 4 of 4) L1M4|LINE|L1 32712 NR_030318 693174 NR_030318 ENSG00000207973 MIR589 MIRN589|hsa-mir-589|mir-589 microRNA 589 ncRNA 145.167-16 chr12 4215883 4216238 + 0.5 NA Intergenic Intergenic -57702 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 123.5-19 chr12 29018297 29018666 + 0.5 NA Intergenic Intergenic -130797 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 115.167-84 chr5 58534769 58535153 + 0.5 NA Intergenic Intergenic -4852 NR_039639 100616339 NR_039639 ENSG00000265699 MIR548AE2 - microRNA 548ae-2 ncRNA 180.333-15 chr12 24250271 24250823 + 0.5 NA intron (NM_001261414, intron 4 of 16) intron (NM_001261414, intron 4 of 16) 27276 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 131.667-5 chr1 103551710 103552263 + 0.5 NA intron (NM_017619, intron 14 of 14) intron (NM_017619, intron 14 of 14) -2658 NM_020978 280 Hs.484588 NM_020978 ENSG00000240038 AMY2B AMY2|AMY3|HXA amylase alpha 2B (pancreatic) protein-coding 139.667-13 chr10 43246945 43247279 + 0.5 NA intron (NM_145313, intron 1 of 12) L1MB7|LINE|L1 -17373 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 165.667-11 chr10 56884551 56885229 + 0.5 NA Intergenic Intergenic 419669 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 205.667-57 chr8 78017937 78018794 + 0.5 NA Intergenic Intergenic -497975 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 186-19 chr18 54771763 54772147 + 0.5 NA Intergenic Intergenic -56522 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 148.333 chr1 20008226 20008573 + 0.5 NA Intergenic MER66B|LTR|ERV1 -27965 NM_001161728 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 140.333-54 chr4 64624952 64625424 + 0.5 NA Intergenic LTR22A|LTR|ERVK -215728 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 173.667-39 chr3 147007177 147007668 + 0.5 NA Intergenic L1M1|LINE|L1 85499 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 141.667-76 chr4 55069013 55069476 + 0.5 NA Intergenic Intergenic 56351 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 121.5-5 chr1 161821072 161821485 + 0.5 NA intron (NM_007348, intron 9 of 15) L2c|LINE|L2 54958 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 180.167-52 chr7 41081292 41081806 + 0.5 NA Intergenic Intergenic -20055 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 160-60 chr5 17781504 17781887 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -25579 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 146.833-39 chr3 66554211 66554737 + 0.5 NA Intergenic L1ME3A|LINE|L1 -54053 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 127.333-97 chr6 93543555 93543963 + 0.5 NA Intergenic Intergenic -124177 NM_001288630 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 115.833-2 chr1 93805217 93805611 + 0.5 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -30031 NR_148965 723788 Hs.659312 NR_148965 ENSG00000137936 MIG7 - mig-7 ncRNA 191.5-7 chr10 108755388 108756089 + 0.5 NA Intergenic Intergenic -686445 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 133.333-118 chr8 81565342 81565682 + 0.5 NA Intergenic L1MA3|LINE|L1 -34122 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 123.333-94 chr6 75698670 75699115 + 0.5 NA intron (NM_001100409, intron 17 of 22) AluSz|SINE|Alu -50347 NM_001368138 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 117.167-2 chr1 39854015 39854557 + 0.5 NA intron (NM_017646, intron 2 of 10) intron (NM_017646, intron 2 of 10) 29218 NM_017646 54802 Hs.356554 NM_017646 ENSG00000043514 TRIT1 COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1 tRNA isopentenyltransferase 1 protein-coding 125.167-63 chr5 33682156 33682511 + 0.5 NA intron (NM_001324512, intron 5 of 21) L2a|LINE|L2 209657 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 128.833-47 chr2 157775490 157775923 + 0.5 NA intron (NM_001111067, intron 5 of 10) intron (NM_001111067, intron 5 of 10) 62924 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 143.667-7 chr1 110814767 110815087 + 0.5 NA Intergenic Intergenic -56272 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 136-71 chr5 119084009 119084299 + 0.5 NA intron (NM_001290321, intron 1 of 43) AluSz|SINE|Alu 13067 NM_001290321 1657 Hs.181042 NM_005509 ENSG00000172869 DMXL1 - Dmx like 1 protein-coding 132.833-63 chr8 38462595 38463127 + 0.5 NA intron (NM_001174067, intron 1 of 18) AluSx|SINE|Alu 4863 NM_001174066 2260 Hs.264887 NM_015850 ENSG00000077782 FGFR1 BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 176.667-45 chr21 44071040 44071675 + 0.5 NA intron (NM_003274, intron 7 of 22) intron (NM_003274, intron 7 of 22) -2967 NM_001351709 7109 Hs.126221 NM_003274 ENSG00000160218 TRAPPC10 EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30 trafficking protein particle complex 10 protein-coding 139.167-53 chr3 4099585 4100053 + 0.5 NA Intergenic L1MA6|LINE|L1 -203485 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 113.5-78 chr6 148539235 148539658 + 0.5 NA intron (NM_001346506, intron 17 of 20) L1PB3|LINE|L1 30295 NM_001346509 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 119.5-5 chr1 98959138 98959646 + 0.5 NA intron (NM_001037317, intron 1 of 5) MLT1O|LTR|ERVL-MaLR -44884 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 181.5-37 chr3 29273450 29274166 + 0.5 NA intron (NR_109804, intron 2 of 2) MLT2D|LTR|ERVL 7131 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 164.667-37 chr2 104270917 104271588 + 0.5 NA Intergenic L1MC|LINE|L1 137080 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 128.667-70 chr20 40768992 40769376 + 0.5 NA Intergenic Intergenic -54561 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 158-42 chr5 121136061 121136789 + 0.5 NA Intergenic Intergenic -186125 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 162.667-24 chr16 64124265 64124764 + 0.5 NA Intergenic Intergenic 997549 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 156.667-87 chr9 33057571 33057934 + 0.5 NA intron (NM_018225, intron 6 of 11) intron (NM_018225, intron 6 of 11) 18922 NM_018225 55234 Hs.655351 NM_018225 ENSG00000122692 SMU1 BWD|SMU-1|fSAP57 SMU1 DNA replication regulator and spliceosomal factor protein-coding 117 chr1 42828818 42829270 + 0.5 NA intron (NM_001017922, intron 2 of 11) intron (NM_001017922, intron 2 of 11) 3466 NM_018538 114625 Hs.439437 NM_018538 ENSG00000164010 ERMAP BTN5|PRO2801|RD|SC erythroblast membrane associated protein (Scianna blood group) protein-coding 127.167-3 chr1 80067697 80068010 + 0.5 NA Intergenic Intergenic -467902 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 130.333-40 chr18 2643484 2643763 + 0.5 NA Intergenic L2a|LINE|L2 11772 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox 3 pseudogene 2 pseudo 143.5-9 chr11 26813223 26813789 + 0.5 NA Intergenic Intergenic -91446 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 191-14 chr15 64342074 64342789 + 0.5 NA intron (NM_001329606, intron 1 of 11) intron (NM_001329606, intron 1 of 11) 13742 NM_001329606 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 183-57 chr8 120711957 120712555 + 0.5 NA intron (NM_021021, intron 1 of 6) AluY|SINE|Alu -48997 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 159.5 chr1 93875269 93875759 + 0.5 NA intron (NM_014597, intron 3 of 6) intron (NM_014597, intron 3 of 6) 3692 NM_014597 30836 Hs.85769 NM_014597 ENSG00000067334 DNTTIP2 ERBP|FCF2|HSU15552|LPTS-RP2|TdIF2 deoxynucleotidyltransferase terminal interacting protein 2 protein-coding 175.167-49 chr8 123037466 123037894 + 0.5 NA intron (NM_024295, intron 1 of 7) intron (NM_024295, intron 1 of 7) 4622 NM_024295 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 228.167-16 chr3 164312027 164312861 + 0.5 NA Intergenic L1PBa|LINE|L1 -140888 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 167.333-9 chr10 57129889 57130303 + 0.5 NA Intergenic Intergenic 174463 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 214.333-21 chr16 24329587 24330387 + 0.5 NA intron (NM_006539, intron 1 of 3) AluSz|SINE|Alu 74434 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 128.5-75 chr7 79018284 79018611 + 0.5 NA intron (NM_001301128, intron 1 of 20) L1PA15|LINE|L1 9459 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 153.833-15 chr11 95574997 95575447 + 0.5 NA Intergenic MIRb|SINE|MIR 214560 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 119.667-11 chr10 104596516 104597063 + 0.5 NA Intergenic Intergenic -44501 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 143.667-30 chr12 59113091 59113523 + 0.5 NA Intergenic Intergenic -192769 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 136.833-23 chr14 82555315 82555759 + 0.5 NA Intergenic L1ME1|LINE|L1 -87095 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 154-26 chr15 34964961 34965355 + 0.5 NA intron (NM_014691, intron 1 of 34) intron (NM_014691, intron 1 of 34) 4584 NM_014691 9716 Hs.510958 NM_014691 ENSG00000021776 AQR IBP160|fSAP164 aquarius intron-binding spliceosomal factor protein-coding 125-60 chr4 35694090 35694410 + 0.5 NA Intergenic MIR|SINE|MIR 549689 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 114-91 chr7 36242612 36243188 + 0.5 NA intron (NM_030636, intron 3 of 7) AluSx1|SINE|Alu 89646 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 139-59 chr6 38177740 38178095 + 0.5 NA intron (NM_052893, intron 11 of 11) intron (NM_052893, intron 11 of 11) -303679 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 128.833-85 chr8 129169821 129170103 + 0.5 NA Intergenic LTR1D1|LTR|ERV1 71278 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 138-2 chr1 80933290 80933629 + 0.5 NA Intergenic Intergenic 292172 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 130.167-7 chr10 107538625 107539206 + 0.5 NA Intergenic L1MA6|LINE|L1 -374209 NM_001206569 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 126-19 chr11 82746989 82747275 + 0.5 NA Intergenic L1MA2|LINE|L1 -13268 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 148.833-10 chr11 101337053 101337547 + 0.5 NA Intergenic Intergenic 182605 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 137.833-24 chr20 44977125 44977646 + 0.5 NA intron (NM_001352385, intron 2 of 11) intron (NM_001352385, intron 2 of 11) 10873 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 175.667-67 chr8 46358158 46358630 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 259249 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 167.333-61 chr6 118858949 118859503 + 0.5 NA intron (NM_017696, intron 6 of 11) L1MD|LINE|L1 -34926 NM_014034 25842 Hs.292316 NM_014034 ENSG00000111875 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 197.833-34 chr8 22188040 22188470 + 0.5 NA intron (NR_033404, intron 8 of 15) AluJb|SINE|Alu 22883 NM_001199 649 Hs.1274 NM_001199 ENSG00000168487 BMP1 OI13|PCOLC|PCP|PCP2|TLD bone morphogenetic protein 1 protein-coding 147.833-31 chr19 51208814 51209452 + 0.5 NA Intergenic AluSx3|SINE|Alu -2124 NR_107041 102465873 NR_107041 ENSG00000278617 MIR8074 hsa-mir-8074 microRNA 8074 ncRNA 149.167-57 chr7 5748102 5748517 + 0.5 NA intron (NM_207111, intron 3 of 16) LTR51|LTR|ERV1 33354 NM_207116 54476 Hs.487458 NM_019011 ENSG00000011275 RNF216 CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN ring finger protein 216 protein-coding 135-69 chr4 44467216 44467714 + 0.5 NA Intergenic L1MA2|LINE|L1 -18656 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 161.5-33 chr4 87504610 87505222 + 0.5 NA 5' UTR (NM_001128310, exon 2 of 12) 5' UTR (NM_001128310, exon 2 of 12) 24587 NM_001291976 8404 Hs.62886 NM_004684 ENSG00000152583 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC like 1 protein-coding 175.667-17 chr14 26068750 26069357 + 0.5 NA Intergenic Intergenic 484377 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 123.833-78 chr9 93638459 93638899 + 0.5 NA intron (NM_005392, intron 3 of 21) L1MB8|LINE|L1 43838 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 135.667-58 chr2 168179500 168179884 + 0.5 NA intron (NM_013233, intron 2 of 17) intron (NM_013233, intron 2 of 17) 67903 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 113.667-25 chr11 83586627 83587230 + 0.5 NA intron (NM_001142699, intron 19 of 27) intron (NM_001142699, intron 19 of 27) 95497 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 121.667-46 chr18 62175791 62176061 + 0.5 NA intron (NM_176787, intron 1 of 30) intron (NM_176787, intron 1 of 30) 11130 NM_176787 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 140.667-94 chr9 107430401 107430754 + 0.5 NA intron (NR_121581, intron 5 of 7) AluSx1|SINE|Alu 36008 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 PRCAT37 long intergenic non-protein coding RNA 1509 ncRNA 114.833-52 chr5 17913599 17913924 + 0.5 NA intron (NR_134286, intron 5 of 7) intron (NR_134286, intron 5 of 7) 106487 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 151.667-42 chr2 115631886 115632594 + 0.5 NA intron (NM_001321912, intron 6 of 25) L1PA5|LINE|L1 288425 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 157.833-40 chr2 135842282 135842618 + 0.5 NA intron (NM_005915, intron 16 of 16) intron (NM_005915, intron 16 of 16) -5266 NM_002299 3938 Hs.551506 NM_002299 ENSG00000115850 LCT LAC|LPH|LPH1 lactase protein-coding 163.333-19 chr13 44014392 44015119 + 0.5 NA Intergenic Intergenic -7580 NR_026955 121838 Hs.201441 NR_026955 LINC00284 NCRNA00284 long intergenic non-protein coding RNA 284 ncRNA 163.833-26 chr17 19353649 19354129 + 0.5 NA intron (NM_001243473, intron 3 of 5) AluSp|SINE|Alu 8834 NM_001321214 27077 Hs.309467 NM_015681 ENSG00000108641 B9D1 B9|EPPB9|JBTS27|MKS9|MKSR-1|MKSR1 B9 domain containing 1 protein-coding 154.333-4 chr1 205618568 205619079 + 0.5 NA TTS (NM_021795) TTS (NM_021795) 14049 NM_021795 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ETS transcription factor ELK4 protein-coding 127.167-52 chr3 24123615 24123967 + 0.5 NA intron (NM_001354708, intron 9 of 9) LTR85b|LTR|Gypsy? -20544 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 157.333-31 chr19 34624741 34625266 + 0.5 NA intron (NR_027620, intron 1 of 3) LTR25-int|LTR|ERV1 -20870 NR_045208 100130342 Hs.679909 NR_045208 SCGB2B3P C2B|SCGB4A3P secretoglobin family 2B member 3, pseudogene pseudo 191-29 chr2 44748842 44749234 + 0.5 NA intron (NM_024766, intron 8 of 10) intron (NM_024766, intron 8 of 10) 189850 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 138-118 chrX 85538308 85538746 + 0.5 NA Intergenic Intergenic -158862 NM_001307940 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 181.167-15 chr21 27545775 27546524 + 0.5 NA Intergenic L1M5|LINE|L1 -176230 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 209-5 chr1 219308393 219308918 + 0.5 NA Intergenic THE1A-int|LTR|ERVL-MaLR 133686 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 121.833-47 chr3 150358280 150358732 + 0.5 NA Intergenic Intergenic -34759 NR_110187 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 148.333-14 chr10 118314252 118314569 + 0.5 NA intron (NM_022063, intron 7 of 8) intron (NM_022063, intron 7 of 8) 27914 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 166.5-59 chr8 24521610 24522128 + 0.5 NA intron (NR_125808, intron 1 of 5) intron (NR_125808, intron 1 of 5) -7001 NR_125809 101929315 Hs.125562 NR_125809 ENSG00000253643 LOC101929315 - uncharacterized LOC101929315 ncRNA 137.167-18 chr14 51164885 51165405 + 0.5 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -69441 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 130.5-50 chr3 101984337 101984626 + 0.5 NA intron (NR_026934, intron 2 of 3) intron (NR_026934, intron 2 of 3) 43622 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 163.667-13 chr11 82792921 82793462 + 0.5 NA Intergenic LTR81C|LTR|Gypsy -59327 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 137.333 chr1 9679737 9680292 + 0.5 NA TTS (NR_126368) TTS (NR_126368) 7560 NR_126368 101929074 Hs.661762 NR_126366 ENSG00000231789 PIK3CD-AS2 - PIK3CD antisense RNA 2 ncRNA 154.5-13 chr12 5255075 5255480 + 0.5 NA Intergenic L1MA9|LINE|L1 -12126 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 126.333-67 chr20 22843381 22843760 + 0.5 NA Intergenic Intergenic -158226 NR_146527 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 190.333-51 chr7 24829798 24830261 + 0.5 NA intron (NR_104111, intron 15 of 21) MIR|SINE|MIR 62592 NM_145322 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 123.667-85 chr5 62991002 62991313 + 0.5 NA Intergenic L1MC1|LINE|L1 412338 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 119.5-87 chr6 45633168 45633672 + 0.5 NA Intergenic Intergenic 211145 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 124.333-80 chr5 54613564 54614073 + 0.5 NA Intergenic AluSp|SINE|Alu 89506 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 192.833-23 chr22 27807895 27808628 + 0.5 NA Intergenic Intergenic -6505 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 141.167-14 chr10 109763750 109764069 + 0.5 NA Intergenic LTR16A|LTR|ERVL 159337 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 187.5-9 chr12 13703629 13704421 + 0.5 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 276331 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 151.667-8 chr10 32212244 32212786 + 0.5 NA Intergenic Intergenic 134643 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 129.833-3 chr1 119755052 119755397 + 0.5 NA intron (NM_005518, intron 6 of 9) AluJo|SINE|Alu 13708 NM_001166107 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 169.5-59 chr6 43146738 43147431 + 0.5 NA intron (NM_152882, intron 16 of 18) intron (NM_152882, intron 16 of 18) -24185 NM_003131 6722 Hs.520140 NM_003131 ENSG00000112658 SRF MCM1 serum response factor protein-coding 141-84 chr8 59329361 59329885 + 0.5 NA Intergenic L1MB5|LINE|L1 210413 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 156.333-62 chr3 30703274 30703712 + 0.5 NA Intergenic LTR8B|LTR|ERV1 96892 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 119.667-22 chr14 89106822 89107161 + 0.5 NA Intergenic AluSc|SINE|Alu 282340 NM_001366535 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 121.833-64 chr5 151755053 151755641 + 0.5 NA intron (NM_004045, intron 1 of 3) MIRb|SINE|MIR 3284 NM_004045 475 Hs.125213 NM_004045 ENSG00000177556 ATOX1 ATX1|HAH1 antioxidant 1 copper chaperone protein-coding 164.5-61 chr8 123933960 123934515 + 0.5 NA intron (NM_001039112, intron 1 of 40) L1MC4|LINE|L1 82250 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 150.167-53 chr5 116845869 116846211 + 0.5 NA Intergenic L2a|LINE|L2 -83831 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 134.167-30 chr16 69574270 69574604 + 0.5 NA intron (NM_138714, intron 2 of 15) intron (NM_138714, intron 2 of 15) 8471 NM_001113178 10725 Hs.371987 NM_006599 ENSG00000102908 NFAT5 NF-AT5|NFATL1|NFATZ|OREBP|TONEBP nuclear factor of activated T cells 5 protein-coding 126.333-104 chr7 113627804 113628317 + 0.5 NA Intergenic Intergenic 290949 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 143.333-12 chr11 99074673 99074982 + 0.5 NA intron (NM_001243270, intron 1 of 23) L2c|LINE|L2 53878 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 172.667-31 chr17 50945633 50946110 + 0.5 NA Intergenic AluSx4|SINE|Alu -77893 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 127.167-4 chr1 95325232 95325552 + 0.5 NA Intergenic Intergenic -7129 NR_135588 100996630 Hs.662270 NR_135588 ENSG00000228504 LINC01760 - long intergenic non-protein coding RNA 1760 ncRNA 169.667-21 chr14 54636172 54636745 + 0.5 NA intron (NM_015589, intron 1 of 11) L2a|LINE|L2 68846 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 132.167-8 chr10 52942655 52943205 + 0.5 NA Intergenic AluSx1|SINE|Alu -171230 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 141.833-11 chr12 89652262 89652725 + 0.5 NA intron (NM_001001323, intron 2 of 21) intron (NM_001001323, intron 2 of 21) 56345 NM_001366532 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 115.333-90 chr6 16634492 16634873 + 0.5 NA intron (NM_000332, intron 4 of 8) L1MB7|LINE|L1 125502 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 238.833-7 chr3 23320908 23321540 + 0.5 NA intron (NM_001370225, intron 3 of 5) MLT1C|LTR|ERVL-MaLR 117897 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 121.667-87 chr7 11647557 11648113 + 0.5 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 184363 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 185.334-7 chrX 108063967 108064672 + 0.5 NA intron (NM_001170553, intron 3 of 7) intron (NM_001170553, intron 3 of 7) 19254 NM_182607 340547 Hs.177164 NM_182607 ENSG00000101842 VSIG1 1700062D20Rik|GPA34|dJ889N15.1 V-set and immunoglobulin domain containing 1 protein-coding 170.333-47 chr3 75054534 75055003 + 0.5 NA Intergenic MER20|DNA|hAT-Charlie -159708 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 116.167-61 chr5 34506358 34506764 + 0.5 NA Intergenic MER113A|DNA|hAT-Charlie -149767 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 166-76 chr9 73075267 73075879 + 0.5 NA Intergenic Intergenic -76292 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 122.334-6 chr5 37617696 37618305 + 0.5 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 216822 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 135.167-3 chr1 52299139 52299543 + 0.5 NA intron (NM_007324, intron 11 of 17) L1M2|LINE|L1 66864 NM_032449 200014 Hs.591451 NM_032449 ENSG00000154222 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 114-110 chrX 78427808 78428256 + 0.5 NA Intergenic Intergenic -100341 NM_001282186 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 136.833-21 chr14 52619111 52619478 + 0.5 NA intron (NR_148417, intron 4 of 7) intron (NR_148417, intron 4 of 7) 66458 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 117.167-28 chr16 58881373 58881639 + 0.5 NA Intergenic Intergenic -147190 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 130.167-68 chr6 105469126 105469386 + 0.5 NA Intergenic Intergenic -66174 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 113.333-13 chr1 237940801 237941089 + 0.5 NA Intergenic Intergenic -50023 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 129.167-66 chr5 166067808 166068199 + 0.5 NA Intergenic Intergenic 858367 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 126-17 chr11 32276229 32276538 + 0.5 NA Intergenic Intergenic 124017 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 128.167-37 chr18 42415765 42416179 + 0.5 NA intron (NR_046174, intron 4 of 9) intron (NR_046174, intron 4 of 9) 229304 NR_046174 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 124-26 chr12 110511236 110511532 + 0.5 NA intron (NM_001286536, intron 4 of 8) L1MA4A|LINE|L1 9053 NM_001286536 144715 Hs.97794 NM_152442 ENSG00000151164 RAD9B - RAD9 checkpoint clamp component B protein-coding 134-68 chr20 48419821 48420156 + 0.5 NA Intergenic AluJo|SINE|Alu 60077 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 205.667-47 chr5 33700249 33701089 + 0.5 NA intron (NM_001324512, intron 3 of 21) L1MD2|LINE|L1 191321 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 149.167-63 chr8 82165997 82166567 + 0.5 NA Intergenic Intergenic -323996 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 150.333-91 chr7 20846580 20847046 + 0.5 NA intron (NR_126381, intron 1 of 5) MER58B|DNA|hAT-Charlie 11382 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 194.334-3 chr2 85805310 85806207 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -9372 NR_038888 284950 Hs.570227 NR_038888 LOC284950 - uncharacterized LOC284950 ncRNA 211.167-18 chr21 26917675 26918605 + 0.5 NA 3' UTR (NM_007038, exon 8 of 8) 3' UTR (NM_007038, exon 8 of 8) -35821 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 151.167-25 chr2 11898559 11898884 + 0.5 NA Intergenic Intergenic -61735 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 143.5-70 chr6 57420944 57421331 + 0.5 NA intron (NM_000947, intron 7 of 13) L2|LINE|L2 31005 NR_036097 100422884 NR_036097 ENSG00000212017 MIR548U - microRNA 548u ncRNA 133.833-37 chr2 34203460 34203738 + 0.5 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 136373 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 136.5-92 chr8 86867063 86867497 + 0.5 NA intron (NM_173538, intron 1 of 10) intron (NM_173538, intron 1 of 10) 865 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 177.667-59 chr5 131530317 131530787 + 0.5 NA intron (NM_016340, intron 6 of 27) intron (NM_016340, intron 6 of 27) 104677 NM_001164386 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 199.333-11 chr15 63372508 63373111 + 0.5 NA intron (NR_135511, intron 2 of 9) intron (NR_135511, intron 2 of 9) 9037 NM_001218 771 Hs.210995 NM_001218 ENSG00000074410 CA12 CA-XII|CAXII|HsT18816|T18816 carbonic anhydrase 12 protein-coding 240.5-3 chr13 77292565 77293146 + 0.5 NA intron (NM_015057, intron 2 of 82) AluSx1|SINE|Alu 34239 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|PHR1|Phr MYC binding protein 2 protein-coding 178.667-66 chr7 108049995 108050645 + 0.5 NA intron (NM_001318046, intron 26 of 33) MIR|SINE|MIR -47159 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 135-89 chr7 95762638 95763089 + 0.5 NA Intergenic L1PB3|LINE|L1 -9643 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 174.333-5 chr10 32280391 32280783 + 0.5 NA intron (NM_001272004, intron 10 of 13) AluSg7|SINE|Alu 66571 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 123-59 chr22 31296450 31296754 + 0.5 NA Intergenic Intergenic -4068 NM_001135911 113791 Hs.26670 NM_052880 ENSG00000100100 PIK3IP1 HGFL|TrIP|hHGFL(S) phosphoinositide-3-kinase interacting protein 1 protein-coding 115.667-51 chr2 97832693 97833108 + 0.5 NA intron (NM_015348, intron 11 of 40) intron (NM_015348, intron 11 of 40) 98494 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 133.167-58 chr7 4767601 4768008 + 0.5 NA 3' UTR (NM_001037165, exon 9 of 9) 3' UTR (NM_001037165, exon 9 of 9) -7819 NM_014855 9907 Hs.558440 NM_014855 ENSG00000242802 AP5Z1 KIAA0415|SPG48|zeta adaptor related protein complex 5 subunit zeta 1 protein-coding 119.167-53 chr20 52632322 52632766 + 0.5 NA intron (NR_110038, intron 2 of 2) intron (NR_110038, intron 2 of 2) 11706 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 116.667-87 chr4 124326745 124327044 + 0.5 NA Intergenic AluSq|SINE|Alu 231540 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 155.167-53 chr9 131886689 131887040 + 0.5 NA intron (NM_001253881, intron 4 of 6) intron (NM_001253881, intron 4 of 6) -146920 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 138.167-3 chr1 103123980 103124378 + 0.5 NA Intergenic Charlie7|DNA|hAT-Charlie -15657 NR_134980 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 188.5-39 chr3 36116785 36117293 + 0.5 NA Intergenic L1MA3|LINE|L1 -263448 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 197.833-18 chr2 141958952 141959722 + 0.5 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 172364 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 124-101 chr8 128201842 128202118 + 0.5 NA Intergenic Intergenic 51864 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 139.5-27 chr2 66812738 66813176 + 0.5 NA Intergenic L1ME2z|LINE|L1 -91479 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 128.833-66 chr4 94464522 94464966 + 0.5 NA intron (NM_001256428, intron 2 of 11) intron (NM_001256428, intron 2 of 11) 12802 NM_006457 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 118.667-93 chr5 65062544 65062923 + 0.5 NA Intergenic Intergenic 293803 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 116.833-18 chr16 30717516 30717786 + 0.5 NA intron (NM_006662, intron 18 of 33) AluSc|SINE|Alu 7114 NR_002966 677813 Hs.689718 NR_002966 ENSG00000206755 SNORA30 ACA30|SNORA30A small nucleolar RNA, H/ACA box 30 snoRNA 148.333-22 chr12 9329992 9330434 + 0.5 NA Intergenic L1ME3A|LINE|L1 -37251 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 141.333-84 chr6 100292986 100293487 + 0.5 NA Intergenic Intergenic 170439 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 119-66 chr3 127831255 127831534 + 0.5 NA Intergenic MIRb|SINE|MIR -8144 NM_001003794 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 115-68 chr5 150351890 150352321 + 0.5 NA Intergenic AluSx|SINE|Alu -5534 NM_001135243 6949 Hs.519672 NM_000356 ENSG00000070814 TCOF1 MFD1|TCS|TCS1|treacle treacle ribosome biogenesis factor 1 protein-coding 249.667-44 chr8 65614998 65615986 + 0.5 NA intron (NM_018120, intron 3 of 6) AluSx1|SINE|Alu 18685 NM_018120 55156 Hs.269542 NM_018120 ENSG00000104442 ARMC1 Arcp armadillo repeat containing 1 protein-coding 130.5-5 chr1 196433499 196433808 + 0.5 NA intron (NM_001287820, intron 8 of 26) intron (NM_001287820, intron 8 of 26) 148828 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 211.167-9 chr14 57580984 57581837 + 0.5 NA non-coding (NR_159373, exon 7 of 11) non-coding (NR_159373, exon 7 of 11) -87553 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 115.333-62 chr20 52013101 52013387 + 0.5 NA Intergenic L2a|LINE|L2 92240 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 113.167-3 chr1 230724414 230724785 + 0.5 NA Intergenic AluJb|SINE|Alu -10477 NM_000029 183 Hs.19383 NM_000029 ENSG00000135744 AGT ANHU|SERPINA8|hFLT1 angiotensinogen protein-coding 119.833-82 chr8 60888465 60888852 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 79090 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 220.667-20 chr22 28523858 28524604 + 0.5 NA intron (NM_001145418, intron 2 of 22) AluY|SINE|Alu 64362 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 124-98 chr8 118297770 118298099 + 0.5 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -186115 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 113.833-92 chr9 36367840 36368174 + 0.5 NA intron (NM_194328, intron 4 of 11) AluSx1|SINE|Alu 32262 NM_022781 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 129.833-20 chr14 65887595 65887937 + 0.5 NA Intergenic LTR37-int|LTR|ERV1 416664 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 173.667-68 chr8 118713000 118713545 + 0.5 NA intron (NR_038210, intron 3 of 4) intron (NR_038210, intron 3 of 4) -91309 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 114.833-79 chrX 152659002 152659322 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 21267 NM_018558 55879 Hs.283081 NM_018558 ENSG00000268089 GABRQ THETA gamma-aminobutyric acid type A receptor theta subunit protein-coding 163.667-57 chr4 96558525 96558982 + 0.5 NA intron (NR_147149, intron 2 of 3) intron (NR_147149, intron 2 of 3) 248050 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 123.167-2 chr1 96038569 96038922 + 0.5 NA Intergenic Intergenic 46677 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 120.333-25 chr11 50752550 50752940 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 343598 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 117.167-24 chr14 90738590 90738957 + 0.5 NA intron (NM_001320421, intron 4 of 20) L1M5|LINE|L1 41440 NR_135190 105370622 Hs.662373 NR_135190 ENSG00000258716 LOC105370622 - uncharacterized LOC105370622 ncRNA 165.333-48 chr5 101518752 101519193 + 0.5 NA Intergenic Intergenic -615690 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 166.5-28 chr17 66084561 66084987 + 0.5 NA intron (NM_001302891, intron 6 of 24) L1MA3|LINE|L1 107118 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 130.5-24 chr15 65200170 65200589 + 0.5 NA intron (NM_003613, intron 8 of 8) intron (NM_003613, intron 8 of 8) 11094 NM_003613 8483 Hs.442180 NM_003613 ENSG00000138615 CILP CILP-1|HsT18872 cartilage intermediate layer protein protein-coding 120.333-11 chr1 160239339 160239830 + 0.5 NA non-coding (NR_028106, exon 4 of 4) non-coding (NR_028106, exon 4 of 4) -22165 NR_147618 100287049 Hs.657648 NR_147618 ENSG00000228606 LOC100287049 - uncharacterized LOC100287049 ncRNA 127.833-53 chr3 117590987 117591296 + 0.5 NA Intergenic L1MC3|LINE|L1 99784 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 128.833-68 chr5 26754253 26754626 + 0.5 NA Intergenic L1PA16|LINE|L1 284147 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 117.5-52 chr4 68134213 68134574 + 0.5 NA Intergenic L1MA4A|LINE|L1 -4524 NM_207407 389208 Hs.677557 NM_207407 ENSG00000198092 TMPRSS11F - transmembrane serine protease 11F protein-coding 204.667-38 chr5 79729930 79730513 + 0.5 NA exon (NM_153610, exon 2 of 13) exon (NM_153610, exon 2 of 13) 40385 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 126.333-62 chr2 167291498 167291807 + 0.5 NA Intergenic Intergenic 104280 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 123-30 chr16 54161411 54161788 + 0.5 NA Intergenic Intergenic 109280 NR_126340 100996338 Hs.232014 NR_126340 LINC02169 - long intergenic non-protein coding RNA 2169 ncRNA 123.333-78 chr3 173939295 173939747 + 0.5 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -18725 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 143.833-38 chr5 72441451 72442063 + 0.5 NA 3' UTR (NM_152625, exon 5 of 5) 3' UTR (NM_152625, exon 5 of 5) 65653 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 166.667-7 chr10 31518147 31518556 + 0.5 NA intron (NM_001323638, intron 10 of 12) CR1-3_Croc|LINE|CR1 -118596 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 116.5-63 chr4 136814990 136815408 + 0.5 NA intron (NR_149105, intron 3 of 3) intron (NR_149105, intron 3 of 3) -378557 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 113.333-53 chr2 124440856 124441201 + 0.5 NA intron (NM_130773, intron 5 of 23) intron (NM_130773, intron 5 of 23) 415741 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 158-47 chr7 35335508 35336185 + 0.5 NA intron (NR_038864, intron 1 of 2) L1MB3|LINE|L1 21991 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 157.167-53 chr6 45458501 45459036 + 0.5 NA intron (NM_001015051, intron 5 of 7) intron (NM_001015051, intron 5 of 7) 36493 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 213.333-16 chr17 32122413 32123130 + 0.5 NA Intergenic Arthur1B|DNA|hAT-Tip100 -19683 NM_001288754 55288 Hs.655325 NM_018307 ENSG00000126858 RHOT1 ARHT1|MIRO-1|MIRO1 ras homolog family member T1 protein-coding 120-43 chr18 3538876 3539216 + 0.5 NA intron (NM_001242762, intron 6 of 9) intron (NM_001242762, intron 6 of 9) -55068 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 116.5-23 chr15 100815593 100815947 + 0.5 NA Intergenic L1MD|LINE|L1 -33982 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 113.667-33 chr12 21833354 21833906 + 0.5 NA intron (NM_005691, intron 28 of 37) L2a|LINE|L2 -58924 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 148.333-26 chr12 65860094 65860437 + 0.5 NA intron (NR_158984, intron 2 of 2) MER47A|DNA|TcMar-Tigger 21313 NR_120478 100129940 Hs.685856 NR_120478 ENSG00000197301 HMGA2-AS1 - HMGA2 antisense RNA 1 ncRNA 138.5-25 chr14 39061068 39061785 + 0.5 NA intron (NM_006364, intron 13 of 19) intron (NM_006364, intron 13 of 19) -41714 NR_146545 105370458 NR_146545 ENSG00000258651 SEC23A-AS1 - SEC23A antisense RNA 1 ncRNA 143.5-58 chr3 114979898 114980444 + 0.5 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) -79546 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 119-15 chr10 70873663 70874041 + 0.5 NA intron (NM_003901, intron 12 of 14) intron (NM_003901, intron 12 of 14) 14029 NM_001289797 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 138.833-81 chr7 53523779 53524324 + 0.5 NA Intergenic L1M3|LINE|L1 287880 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 131.833-56 chr5 126398719 126399090 + 0.5 NA intron (NM_001146319, intron 1 of 13) L1M3c|LINE|L1 -24242 NM_001146321 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 125.167-7 chr1 242864475 242864857 + 0.5 NA Intergenic HERVL-int|LTR|ERVL 237078 NR_029401 731275 Hs.722350 NR_029401 ENSG00000214837 LINC01347 - long intergenic non-protein coding RNA 1347 ncRNA 161-41 chr3 94420872 94421310 + 0.5 NA Intergenic L1PA15|LINE|L1 358030 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 141-56 chr22 44107395 44108011 + 0.5 NA intron (NM_001243386, intron 3 of 11) MER21C|LTR|ERVL 38586 NM_001243385 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 127.167-48 chr2 83286588 83286974 + 0.5 NA Intergenic Intergenic -236033 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 131.5-72 chr6 85078509 85078802 + 0.5 NA Intergenic Intergenic 311531 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 146-45 chr21 28668386 28668885 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 129317 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 213.333-44 chr8 49125292 49125995 + 0.5 NA Intergenic LTR16B1|LTR|ERVL 53299 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 181.5 chr1 24470820 24471421 + 0.5 NA non-coding (NR_136506, exon 11 of 11) non-coding (NR_136506, exon 11 of 11) -31224 NM_001251979 11123 Hs.656799 NM_013441 ENSG00000117602 RCAN3 DSCR1L2|MCIP3|RCN3|hRCN3 RCAN family member 3 protein-coding 120.833-14 chr15 26332715 26332996 + 0.5 NA Intergenic L1PB4|LINE|L1 217042 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 121.333-84 chr5 58001320 58001804 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -102400 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 182.833-52 chr6 94598493 94598997 + 0.5 NA Intergenic Intergenic 880442 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 165.167-65 chr9 122312306 122312731 + 0.5 NA intron (NM_199177, intron 5 of 5) intron (NM_199177, intron 5 of 5) 47636 NM_001346347 92399 Hs.368011 NM_138777 ENSG00000148187 MRRF MRFF|MTRRF|RRF mitochondrial ribosome recycling factor protein-coding 159.167-64 chr8 28904978 28905671 + 0.5 NA intron (NM_024567, intron 2 of 10) (CA)n|Simple_repeat|Simple_repeat 14010 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 141.333-97 chr8 133007284 133007723 + 0.5 NA intron (NM_003235, intron 35 of 47) intron (NM_003235, intron 35 of 47) 39078 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 249.5 chr1 73116873 73117529 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -188969 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 192.5-57 chr8 122450691 122451132 + 0.5 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 117733 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 163.333-42 chr2 98136868 98137239 + 0.5 NA intron (NR_144297, intron 7 of 18) L1MB3|LINE|L1 -12480 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 135.5-16 chr11 15631436 15631836 + 0.5 NA Intergenic Intergenic -12249 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 155.167-43 chr6 164722724 164723076 + 0.5 NA Intergenic L1M4|LINE|L1 99163 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 138.833-78 chr6 145549040 145549517 + 0.5 NA Intergenic Intergenic 137599 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 157-26 chr14 63430988 63431382 + 0.5 NA intron (NR_104104, intron 2 of 12) AluSc|SINE|Alu 77053 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 122-43 chr2 234742199 234742688 + 0.5 NA Intergenic HAL1|LINE|L1 59775 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 183.667-48 chr3 21970053 21970655 + 0.5 NA intron (NR_046876, intron 2 of 3) L1MA3|LINE|L1 13215 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 131.167-28 chr14 73848907 73849239 + 0.5 NA Intergenic AluJb|SINE|Alu -2758 NM_001371327 127-33 chr14 74690066 74690647 + 0.5 NA intron (NM_001039479, intron 2 of 19) intron (NM_001039479, intron 2 of 19) 22724 NM_001039479 9870 Hs.497417 NM_014821 ENSG00000119682 AREL1 FIEL1|KIAA0317 apoptosis resistant E3 ubiquitin protein ligase 1 protein-coding 130.5-52 chr3 124380355 124380896 + 0.5 NA intron (NM_001024660, intron 10 of 59) intron (NM_001024660, intron 10 of 59) 6293 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 218.833-15 chr19 18248531 18249024 + 0.5 NA promoter-TSS (NM_000923) promoter-TSS (NM_000923) -577 NM_000923 5143 Hs.132584 NM_000923 ENSG00000105650 PDE4C DPDE1|PDE21 phosphodiesterase 4C protein-coding 126.5-52 chr20 56812283 56812623 + 0.5 NA Intergenic Intergenic 183147 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 135.167-73 chr5 18141331 18141668 + 0.5 NA Intergenic MIR3|SINE|MIR 334225 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 170.5-32 chr2 148741044 148741520 + 0.5 NA intron (NM_015630, intron 2 of 13) MIR|SINE|MIR 96531 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 114.5-98 chr9 6768912 6769173 + 0.5 NA intron (NR_148680, intron 1 of 21) AluSx1|SINE|Alu 11692 NM_001354000 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 118.5-15 chr1 242026654 242027039 + 0.5 NA Intergenic AluJb|SINE|Alu -27748 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 141.667-75 chr4 46616399 46616846 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -226494 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 133.333-112 chr7 36042551 36042879 + 0.5 NA Intergenic Intergenic -52595 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 133-8 chr1 235405340 235405669 + 0.5 NA intron (NM_001287801, intron 3 of 17).2 AluSx|SINE|Alu 38077 NM_003193 6905 Hs.744998 NM_003193 ENSG00000284770 TBCE HRD|KCS|KCS1|PEAMO|pac2 tubulin folding cofactor E protein-coding 185.833-15 chr16 80288309 80288847 + 0.5 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -252156 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 139.333-6 chr10 22304063 22304402 + 0.5 NA Intergenic L1ME1|LINE|L1 -12151 NM_001204062 100532731 Hs.380403 NM_001204062 ENSG00000269897 COMMD3-BMI1 BMI1|PCGF4|RNF51 COMMD3-BMI1 readthrough protein-coding 120.5-21 chr11 110019207 110019533 + 0.5 NA Intergenic Intergenic -74022 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 195.5-4 chr1 236671051 236671656 + 0.5 NA Intergenic Intergenic -15101 NM_001278344 88 Hs.498178 NM_001103 ENSG00000077522 ACTN2 CMD1AA|CMH23 actinin alpha 2 protein-coding 132.333-32 chr12 77037200 77037573 + 0.5 NA intron (NM_203394, intron 7 of 12) AluJb|SINE|Alu 28183 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 130-2 chr1 37258763 37259107 + 0.5 NA Intergenic Intergenic 97372 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 127.5-28 chr17 44900762 44901318 + 0.5 NA exon (NM_001258399, exon 2 of 4) exon (NM_001258399, exon 2 of 4) 1311 NM_001258395 388389 Hs.743398 NM_213607 ENSG00000167131 CCDC103 CILD17|PR46b|SMH coiled-coil domain containing 103 protein-coding 171.167-36 chr3 173023015 173023659 + 0.5 NA intron (NM_031955, intron 3 of 10) L1MD|LINE|L1 117898 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 120.167 chr1 51192877 51193281 + 0.5 NA Intergenic L1MA4|LINE|L1 42017 NR_147076 105378716 NR_147076 ENSG00000203356 LINC01562 - long intergenic non-protein coding RNA 1562 ncRNA 134.833-37 chr3 120955877 120956314 + 0.5 NA intron (NR_145517, intron 3 of 8) L1MD1|LINE|L1 47418 NM_001348343 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5 like protein-coding 188.5-52 chr8 70035917 70036542 + 0.5 NA Intergenic AluSx1|SINE|Alu 35023 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 137.333-50 chr2 98941953 98942261 + 0.5 NA Intergenic Intergenic -5882 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 119.333-43 chr18 78923664 78923961 + 0.5 NA Intergenic Charlie2b|DNA|hAT-Charlie -56463 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 227.333-21 chr2 169079982 169080846 + 0.5 NA promoter-TSS (NM_001142271) promoter-TSS (NM_001142271) -693 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 162.5-76 chr9 28447227 28447824 + 0.5 NA intron (NM_152570, intron 3 of 6) MLT1A0|LTR|ERVL-MaLR 271780 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 133.5-26 chr15 91295198 91295615 + 0.5 NA 3' UTR (NM_001323031, exon 13 of 13) 3' UTR (NM_001323031, exon 13 of 13) -167933 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 166.333-32 chr2 33262646 33263292 + 0.5 NA intron (NM_206943, intron 14 of 33) intron (NM_206943, intron 14 of 33) 128372 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 188.333-9 chr11 76457511 76458063 + 0.5 NA intron (NM_001300942, intron 5 of 21) intron (NM_001300942, intron 5 of 21) 12762 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 115.667-102 chr6 20948450 20948803 + 0.5 NA intron (NM_017774, intron 9 of 15) intron (NM_017774, intron 9 of 15) 414169 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 130.167-30 chr2 73811349 73811944 + 0.5 NA intron (NM_001353344, intron 1 of 2) intron (NM_001353344, intron 1 of 2) 2907 NM_001353344 388960 Hs.456833 NM_001080474 ENSG00000187833 C2orf78 COG5373|hCG1989538 chromosome 2 open reading frame 78 protein-coding 145.167-13 chr11 7207064 7207453 + 0.5 NA Intergenic Intergenic -27508 NR_031683 100313774 NR_031683 ENSG00000221703 MIR302E MIRN302E microRNA 302e ncRNA 153-24 chr18 68275555 68275954 + 0.5 NA Intergenic MER89-int|LTR|ERV1 439354 NM_001350517 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 123-83 chr7 50638553 50639016 + 0.5 NA intron (NM_001350816, intron 6 of 17) L1PB4|LINE|L1 66517 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 158.333-42 chr2 108250584 108251110 + 0.5 NA intron (NM_001008743, intron 2 of 7) L1ME1|LINE|L1 10879 NM_001320878 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 140.5-66 chr6 37375261 37375596 + 0.5 NA intron (NR_046399, intron 5 of 7) MER102b|DNA|hAT-Charlie 21445 NM_183078 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 162.167-5 chr10 33940823 33941210 + 0.5 NA Intergenic AluJr|SINE|Alu -168336 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 144.833-46 chr3 49323705 49324266 + 0.5 NA intron (NM_001251877, intron 6 of 6) intron (NM_001251877, intron 6 of 6) 16068 NM_001251877 7375 Hs.77500 NM_003363 ENSG00000114316 USP4 UNP|Unph ubiquitin specific peptidase 4 protein-coding 216.667-36 chr5 26869980 26870756 + 0.5 NA Intergenic Intergenic 168218 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 142-95 chr8 145046344 145046834 + 0.5 NA Intergenic AluY|SINE|Alu -5878 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 126.167-41 chr2 96598718 96599245 + 0.5 NA TTS (NM_001349256) TTS (NM_001349256) 39010 NR_047658 55683 Hs.516341 NM_017991 ENSG00000114982 KANSL3 KIAA1310|NSL3|Rcd1 KAT8 regulatory NSL complex subunit 3 protein-coding 142.833-55 chr5 27622873 27623439 + 0.5 NA Intergenic Intergenic 150864 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 163.667-49 chr3 27765567 27766125 + 0.5 NA Intergenic AluJb|SINE|Alu -31742 NR_146630 105377007 NR_146630 LINC01980 - long intergenic non-protein coding RNA 1980 ncRNA 115.167-108 chr8 124701421 124701948 + 0.5 NA intron (NM_001282971, intron 2 of 14) intron (NM_001282971, intron 2 of 14) 26789 NM_001363299 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 146.833-62 chr8 4714243 4714578 + 0.5 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 280504 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 176.167 chr1 50881017 50881442 + 0.5 NA intron (NM_007051, intron 1 of 18) MER5B|DNA|hAT-Charlie 79038 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 175.833-40 chr7 86307946 86308526 + 0.5 NA Intergenic L1M2|LINE|L1 -335673 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 118.5-95 chr8 137309751 137310057 + 0.5 NA Intergenic MIR|SINE|MIR 103684 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 188-15 chr11 60359459 60360078 + 0.5 NA Intergenic Intergenic -18717 NM_206938 58475 Hs.530735 NM_021201 ENSG00000166927 MS4A7 4SPAN2|CD20L4|CFFM4|MS4A8 membrane spanning 4-domains A7 protein-coding 120.333-61 chr2 221277174 221277648 + 0.5 NA Intergenic Intergenic 294893 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 141.167-4 chr1 171195056 171195470 + 0.5 NA intron (NR_160266, intron 2 of 8) intron (NR_160266, intron 2 of 8) 9963 NM_001301347 2327 Hs.144912 NM_001460 ENSG00000094963 FMO2 FMO1B1 flavin containing dimethylaniline monoxygenase 2 protein-coding 122-66 chr5 43362627 43362966 + 0.5 NA Intergenic Intergenic 34341 NM_001301875 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 115.167-68 chr3 39137826 39138334 + 0.5 NA promoter-TSS (NR_106880) promoter-TSS (NR_106880) -126 NR_106880 102466743 NR_106880 ENSG00000284158 MIR6822 hsa-mir-6822 microRNA 6822 ncRNA 117.5-47 chr4 30565219 30565715 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR -154902 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 124.167-39 chr18 77172629 77172987 + 0.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -40025 NM_001025101 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 164.167-23 chr15 74570013 74570392 + 0.5 NA intron (NM_001307939, intron 2 of 8) intron (NM_001307939, intron 2 of 8) 28982 NM_006465 10620 Hs.647642 NM_006465 ENSG00000179361 ARID3B BDP|DRIL2 AT-rich interaction domain 3B protein-coding 123.5-21 chr12 67135672 67136102 + 0.5 NA Intergenic L1PA2|LINE|L1 -39603 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 124.833-3 chr1 107920632 107920954 + 0.5 NA intron (NM_006113, intron 1 of 26) intron (NM_006113, intron 1 of 26) 23570 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 123.833-58 chr7 6428598 6429034 + 0.5 NA intron (NM_001142936, intron 4 of 12) AluSz6|SINE|Alu 19138 NM_139179 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 138-97 chr7 9804894 9805304 + 0.5 NA Intergenic L1MC1|LINE|L1 170829 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 158.667-78 chr6 81356157 81356560 + 0.5 NA Intergenic Intergenic 396323 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 121.667-25 chr14 62117802 62118251 + 0.5 NA intron (NR_015358, intron 1 of 3) intron (NR_015358, intron 1 of 3) 669 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 115-13 chr10 61528857 61529224 + 0.5 NA Intergenic Intergenic 48999 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 172.833-9 chr12 19145776 19146230 + 0.5 NA intron (NM_019012, intron 3 of 25) intron (NM_019012, intron 3 of 25) 16270 NM_001256470 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 144.667-6 chr1 174201028 174201415 + 0.5 NA intron (NM_001366445, intron 1 of 13) AluJr|SINE|Alu 41701 NM_001366446 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 131-17 chr13 37674408 37674915 + 0.5 NA intron (NM_001354806, intron 3 of 9) intron (NM_001354806, intron 3 of 9) -75817 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 115.333-105 chr8 91684250 91684653 + 0.5 NA Intergenic L1MA9|LINE|L1 333229 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 114.833-43 chr3 77254634 77255120 + 0.5 NA intron (NM_001290039, intron 2 of 26) MIRc|SINE|MIR 156865 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 175.333-29 chr2 227317701 227318286 + 0.5 NA intron (NR_102371, intron 1 of 13) L1PA16|LINE|L1 7171 NR_102371 654841 Hs.659982 NR_102371 ENSG00000236432 LOC654841 - uncharacterized LOC654841 ncRNA 156.333-3 chr1 54329305 54329752 + 0.5 NA intron (NM_001009955, intron 4 of 16) intron (NM_001009955, intron 4 of 16) 76866 NM_001009955 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 189.167-46 chr9 32527742 32528485 + 0.5 NA Intergenic AluSx1|SINE|Alu -1917 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIG1|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 210.667-27 chr20 40375469 40375997 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 313503 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 222.834-4 chr20 55964498 55965384 + 0.5 NA Intergenic Chap1_Mam|DNA|hAT-Charlie 40578 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 160.667-30 chr17 49587436 49587897 + 0.5 NA Intergenic Intergenic 11795 NM_007225 11248 Hs.55069 NM_007225 ENSG00000182575 NXPH3 NPH3 neurexophilin 3 protein-coding 122.333-85 chr4 100803729 100804058 + 0.5 NA Intergenic Intergenic -128780 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 152.333-63 chr7 143197928 143198490 + 0.5 NA intron (NM_001130026, intron 8 of 10) L1MA10|LINE|L1 14790 NM_176881 259285 Hs.553660 NM_176881 ENSG00000236398 TAS2R39 T2R39|T2R57 taste 2 receptor member 39 protein-coding 173.5-19 chr15 56688133 56688966 + 0.5 NA intron (NM_001002843, intron 8 of 20) intron (NM_001002843, intron 8 of 20) 45537 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 120.5-52 chr2 172878461 172879002 + 0.5 NA intron (NM_001282899, intron 1 of 27) intron (NM_001282899, intron 1 of 27) 18693 NM_001282900 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 152.333-3 chr1 182532322 182532871 + 0.5 NA intron (NM_001366934, intron 14 of 22) MIRb|SINE|MIR 56660 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 120.833-21 chr17 76702326 76702860 + 0.5 NA intron (NM_198530, intron 1 of 3) AluSx1|SINE|Alu 7004 NR_130926 439921 Hs.250723 NM_198530 ENSG00000182534 MXRA7 - matrix remodeling associated 7 protein-coding 135.667-85 chr5 38746200 38746519 + 0.5 NA intron (NR_109951, intron 2 of 3) intron (NR_109951, intron 2 of 3) -26086 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 114.5-39 chr16 78597304 78597610 + 0.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 497803 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 187.167-50 chrX 65547919 65548706 + 0.5 NA Intergenic AluSc|SINE|Alu 4109 NR_033742 83957 Hs.652967 NR_033742 ENSG00000227942 FRMD8P1 - FERM domain containing 8 pseudogene 1 pseudo 122.5-92 chr7 87575440 87575827 + 0.5 NA intron (NM_001348944, intron 6 of 29) intron (NM_001348944, intron 6 of 29) 25251 NM_001348946 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 166-17 chr12 27542428 27543082 + 0.5 NA intron (NM_003622, intron 1 of 29) intron (NM_003622, intron 1 of 29) 18549 NM_001198916 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 131.333-48 chr2 76464755 76465126 + 0.5 NA Intergenic Intergenic -521025 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 114-28 chr11 126334065 126334634 + 0.5 NA intron (NM_014026, intron 3 of 5) (ATTT)n|Simple_repeat|Simple_repeat 21238 NR_033839 399972 Hs.585206 NR_033839 GSEC DCPS-AS1|ST3GAL4-AS1 G-quadruplex forming sequence containing lncRNA ncRNA 122.333-75 chr3 174575690 174576163 + 0.5 NA Intergenic AluSp|SINE|Alu -283408 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 182-55 chr9 28142482 28143105 + 0.5 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -568927 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 140.333-86 chr8 102606756 102607432 + 0.5 NA Intergenic Intergenic 46870 NR_103759 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 117.833-15 chr12 2088041 2088517 + 0.5 NA intron (NM_199460, intron 1 of 49).2 intron (NM_199460, intron 1 of 49).2 34994 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 122-31 chr18 32389155 32389572 + 0.5 NA intron (NM_001242409, intron 2 of 5) MIR|SINE|MIR 81519 NM_022751 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 132.667-17 chr11 83179029 83179409 + 0.5 NA intron (NM_001346413, intron 11 of 15) HAL1|LINE|L1 8265 NR_133914 106736475 Hs.595343 NR_133914 PCF11-AS1 - PCF11 antisense RNA 1 ncRNA 122.667-90 chr6 65168362 65168702 + 0.5 NA intron (NM_001292009, intron 12 of 43) MLT1A0|LTR|ERVL-MaLR -132886 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 188.333-40 chr3 188908246 188908777 + 0.5 NA Intergenic Intergenic 39128 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 123.667-76 chr4 33058214 33058646 + 0.5 NA Intergenic Intergenic 707392 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 130.333-36 chr15 68693400 68693775 + 0.5 NA intron (NM_006091, intron 2 of 11) intron (NM_006091, intron 2 of 11) 52084 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 138-60 chr2 171715174 171715564 + 0.5 NA exon (NM_001271785, exon 7 of 18) exon (NM_001271785, exon 7 of 18) 27614 NM_001271789 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 200-53 chr5 14979182 14979656 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -107641 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 149.333-101 chr9 28643983 28644395 + 0.5 NA intron (NM_152570, intron 2 of 6) L1MA2|LINE|L1 75116 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 185.167-34 chr5 20478946 20479538 + 0.5 NA intron (NM_001349558, intron 1 of 15) L1MA3|LINE|L1 96471 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 164.333-53 chr4 113866275 113866675 + 0.5 NA Intergenic Intergenic -104548 NM_172127 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 132.667-61 chr3 83957359 83957811 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 911990 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 136.833-60 chr5 156826015 156826315 + 0.5 NA Intergenic Intergenic -24130 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 137.5-73 chr4 88178639 88179083 + 0.5 NA intron (NM_001257386, intron 1 of 15) L1MA4|LINE|L1 -19538 NM_001348989 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 114.833-19 chr15 26271954 26272400 + 0.5 NA Intergenic Intergenic 156364 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 201-41 chr6 72514510 72515027 + 0.5 NA Intergenic L1MD2|LINE|L1 -107075 NM_001160132 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 116.333-19 chr10 104520188 104520463 + 0.5 NA Intergenic L1MA2|LINE|L1 -40050 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 113.167-23 chr16 82320208 82320475 + 0.5 NA Intergenic L1M2|LINE|L1 -150117 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 176.167-32 chr4 45408427 45408843 + 0.5 NA Intergenic Intergenic -682001 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 114.333-68 chr2 76593172 76593540 + 0.5 NA Intergenic Intergenic -392609 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 156.5-92 chrX 70970865 70971302 + 0.5 NA Intergenic HAL1M8|LINE|L1 -39987 NM_001048164 84889 Hs.175220 NM_032803 ENSG00000165349 SLC7A3 ATRC3|CAT-3|CAT3 solute carrier family 7 member 3 protein-coding 115.667-117 chr8 85290047 85290452 + 0.5 NA Intergenic Intergenic 44791 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 187-15 chr15 93193885 93194378 + 0.5 NA Intergenic L1ME3G|LINE|L1 -11935 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 113.833-5 chr1 97066058 97066564 + 0.5 NA Intergenic L1MB8|LINE|L1 -29612 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 121.167-27 chr15 62089892 62090206 + 0.5 NA Intergenic (CTTT)n|Simple_repeat|Simple_repeat 23072 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 146.333-30 chr14 48676574 48676985 + 0.5 NA Intergenic L1PA16|LINE|L1 -881765 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 139.333-25 chr12 51359961 51360477 + 0.5 NA intron (NM_007210, intron 7 of 11) intron (NM_007210, intron 7 of 11) -13540 NM_001971 1990 Hs.348395 NM_001971 ENSG00000139610 CELA1 ELA1 chymotrypsin like elastase 1 protein-coding 151.167-5 chr10 34186478 34186942 + 0.5 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -414030 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 143.333-59 chr3 108916436 108916842 + 0.5 NA intron (NM_001363884, intron 2 of 3) intron (NM_001363884, intron 2 of 3) 37207 NM_001363884 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 175-7 chr1 244849783 244850279 + 0.5 NA TTS (NM_004501) TTS (NM_004501) 4186 NR_132782 106635532 NR_132782 SNORA100 - small nucleolar RNA, H/ACA box 100 snoRNA 123.667-84 chr5 15611649 15612059 + 0.5 NA intron (NR_109945, intron 1 of 2) AluJr|SINE|Alu 3148 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 148.5-64 chr7 3506491 3506828 + 0.5 NA intron (NM_152744, intron 1 of 44) L1MEf|LINE|L1 205407 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 132.667-76 chr5 18311850 18312412 + 0.5 NA Intergenic Intergenic 504857 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 129.833-46 chr3 162260120 162260538 + 0.5 NA Intergenic Intergenic 763521 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 213-14 chr2 15604530 15605157 + 0.5 NA intron (NM_004939, intron 10 of 25) L2a|LINE|L2 12975 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 119-95 chr8 60196844 60197311 + 0.5 NA intron (NR_135821, intron 9 of 9) L1M5|LINE|L1 84323 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 155.167-5 chr1 191251465 191251852 + 0.5 NA Intergenic L1MA4|LINE|L1 -23160 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 129.833-42 chr22 41168733 41169159 + 0.5 NA intron (NM_001429, intron 25 of 30) intron (NM_001429, intron 25 of 30) 28555 NR_110514 101927279 Hs.517517 NR_110514 EP300-AS1 - EP300 antisense RNA 1 ncRNA 159-57 chr4 100178027 100178381 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -11829 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 113.833-56 chr3 95835537 95835982 + 0.5 NA Intergenic PRIMA4_LTR|LTR|ERV1 -152566 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 217.333-46 chr9 106976357 106976889 + 0.5 NA non-coding (NR_126029, exon 5 of 5) non-coding (NR_126029, exon 5 of 5) 113457 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 120.667-74 chr22 37895493 37895851 + 0.5 NA Intergenic AluJr4|SINE|Alu -10625 NM_033386 85377 Hs.517610 NM_033386 ENSG00000100139 MICALL1 MICAL-L1|MIRAB13 MICAL like 1 protein-coding 145.167-66 chr6 166366264 166366585 + 0.5 NA intron (NM_001270879, intron 3 of 4) intron (NM_001270879, intron 3 of 4) 16516 NM_016098 51660 Hs.172755 NM_016098 ENSG00000060762 MPC1 BRP44L|CGI-129|MPYCD|SLC54A1 mitochondrial pyruvate carrier 1 protein-coding 138.5-38 chr2 15801956 15802313 + 0.5 NA Intergenic Intergenic 111352 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 162.833-23 chr2 147093659 147094069 + 0.5 NA Intergenic Intergenic 506807 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 172.333-9 chr10 29871464 29872015 + 0.5 NA Intergenic Intergenic -134803 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 145-84 chr7 86183076 86183396 + 0.5 NA Intergenic L1MC4|LINE|L1 -460673 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 123-85 chr8 118347065 118347399 + 0.5 NA intron (NM_001363274, intron 4 of 4) MER68|LTR|ERVL -235413 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 127.333-40 chr16 26566674 26567256 + 0.5 NA Intergenic Intergenic -499962 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 148.5-10 chr10 89154360 89154845 + 0.5 NA Intergenic MIR|SINE|MIR 52715 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 124.833-33 chr2 22167883 22168231 + 0.5 NA Intergenic L1PBa|LINE|L1 -368422 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 139.5-34 chr20 59683894 59684260 + 0.5 NA intron (NM_001199506, intron 1 of 12) intron (NM_001199506, intron 1 of 12) 7416 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 148.333-46 chr2 108778113 108778487 + 0.5 NA intron (NM_006267, intron 25 of 28) intron (NM_006267, intron 25 of 28) -8450 NM_001351544 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 154-30 chr17 8178442 8178864 + 0.5 NA Intergenic FLAM_C|SINE|Alu -2273 NM_032354 84314 Hs.513933 NM_032354 ENSG00000179029 TMEM107 GRVS638|JBTS29|MKS13|PRO1268 transmembrane protein 107 protein-coding 114.167-27 chr13 34034853 34035212 + 0.5 NA Intergenic L1MEc|LINE|L1 216883 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 128.833-19 chr11 37660354 37660711 + 0.5 NA Intergenic MLT2B1|LTR|ERVL -278069 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 121.833-14 chr12 50691726 50692018 + 0.5 NA intron (NM_173602, intron 13 of 37) AluSx|SINE|Alu -72229 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 115.167-45 chr16 75982497 75982752 + 0.5 NA Intergenic Intergenic -256134 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 174.833-13 chr15 72140518 72141128 + 0.5 NA 3' UTR (NM_001172109, exon 3 of 3) 3' UTR (NM_001172109, exon 3 of 3) 22420 NM_145204 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 128.833-39 chr18 22965269 22965645 + 0.5 NA intron (NM_002894, intron 4 of 18) HAL1|LINE|L1 31581 NM_203292 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 151.833-43 chr4 144299082 144299671 + 0.5 NA Intergenic MIR|SINE|MIR -158658 NM_002099 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 119.167-74 chr5 18957636 18957962 + 0.5 NA Intergenic MIRb|SINE|MIR 928473 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 129.333-81 chr6 132886606 132887059 + 0.5 NA Intergenic Intergenic 69613 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 136.833-63 chr6 63719660 63720192 + 0.5 NA TTS (NM_001142800) TTS (NM_001142800) 73400 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 182.833-24 chr18 74478451 74479111 + 0.5 NA Intergenic Intergenic -17582 NM_001370249 55748 Hs.149185 NM_018235 ENSG00000133313 CNDP2 CN2|CPGL|HEL-S-13|HsT2298|PEPA carnosine dipeptidase 2 protein-coding 123-51 chr2 187828617 187828957 + 0.5 NA Intergenic L1PB4|LINE|L1 -274282 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 176.167-39 chr6 120253470 120254074 + 0.5 NA Intergenic Intergenic 238593 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 174.5-20 chr18 57230554 57231241 + 0.5 NA Intergenic Intergenic -59703 NR_149129 105372138 Hs.574448 NR_149129 ENSG00000267726 LINC02565 - long intergenic non-protein coding RNA 2565 ncRNA 189.333-34 chr3 69302116 69302885 + 0.5 NA intron (NM_015123, intron 3 of 22) L1ME4b|LINE|L1 83588 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 126.667-16 chr11 112951340 112951792 + 0.5 NA Intergenic Intergenic -9854 NM_181351 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 131.333-104 chr8 134239960 134240315 + 0.5 NA Intergenic L2c|LINE|L2 353641 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 127.833-77 chr8 86014145 86014532 + 0.5 NA Intergenic Intergenic 55330 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 130-92 chr6 156439489 156439768 + 0.5 NA Intergenic Intergenic 60878 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 138.167-53 chr3 111276712 111277106 + 0.5 NA Intergenic Intergenic 205093 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 122.667-58 chr22 34716982 34717453 + 0.5 NA Intergenic L1PREC2|LINE|L1 280699 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 162.833-5 chr10 29327429 29327835 + 0.5 NA Intergenic Intergenic 38562 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 171.333-47 chr4 36208737 36209446 + 0.5 NA intron (NR_146894, intron 6 of 32) intron (NR_146894, intron 6 of 32) 34848 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 153.333-25 chr17 15408828 15409374 + 0.5 NA Intergenic Intergenic 58520 NM_001204477 284040 Hs.164595 NM_173622 ENSG00000239704 CDRT4 - CMT1A duplicated region transcript 4 protein-coding 113.167-72 chr7 36526930 36527208 + 0.5 NA intron (NM_001177507, intron 18 of 19) intron (NM_001177507, intron 18 of 19) 73051 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 136.167-57 chr4 39854972 39855404 + 0.5 NA intron (NM_001100399, intron 26 of 32) intron (NM_001100399, intron 26 of 32) 122723 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 152.5-3 chr1 169896385 169896868 + 0.5 NA Intergenic MER54A|LTR|ERVL -2667 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 122-50 chr3 96803322 96803693 + 0.5 NA Intergenic AluSx3|SINE|Alu -11087 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 180.333-11 chr10 61051882 61052393 + 0.5 NA Intergenic Intergenic 35862 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 131.5-52 chr3 142930799 142931156 + 0.5 NA intron (NR_038455, intron 1 of 4) intron (NR_038455, intron 1 of 4) 4302 NR_038455 100507389 Hs.38715 NR_038455 ENSG00000243818 LOC100507389 - uncharacterized LOC100507389 ncRNA 121.333-69 chr3 157363568 157363896 + 0.5 NA exon (NM_001167911, exon 9 of 13) exon (NM_001167911, exon 9 of 13) -73118 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 181.5-11 chr11 46197798 46198511 + 0.5 NA Intergenic Intergenic 26199 NR_120565 101928894 Hs.552679 NR_120565 ENSG00000255314 LOC101928894 - uncharacterized LOC101928894 ncRNA 120.333-96 chr5 117539064 117539323 + 0.5 NA intron (NR_046089, intron 3 of 5) AluJo|SINE|Alu 123681 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 129-3 chr1 56620800 56621196 + 0.5 NA Intergenic Intergenic -24316 NM_006252 5563 Hs.437039 NM_006252 ENSG00000162409 PRKAA2 AMPK|AMPK2|AMPKa2|PRKAA protein kinase AMP-activated catalytic subunit alpha 2 protein-coding 119-91 chr7 47137078 47137430 + 0.5 NA Intergenic L1MEc|LINE|L1 327549 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 190.5-39 chr4 41498127 41498524 + 0.5 NA intron (NM_001289122, intron 2 of 25) intron (NM_001289122, intron 2 of 25) -39832 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 131.833-58 chr6 11436683 11437004 + 0.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR -54495 NM_001142393 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 138.833-37 chr2 129771370 129771799 + 0.5 NA Intergenic L1MEg|LINE|L1 105907 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 132.333-17 chr10 105454901 105455298 + 0.5 NA Intergenic L1M5|LINE|L1 365234 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 132.833 chr1 39487335 39487829 + 0.5 NA TTS (NM_012090) TTS (NM_012090) -4054 NM_181809 353500 Hs.472497 NM_181809 ENSG00000183682 BMP8A - bone morphogenetic protein 8a protein-coding 153.5-68 chr7 47839346 47839773 + 0.5 NA exon (NM_138295, exon 36 of 57) exon (NM_138295, exon 36 of 57) 44268 NR_161269 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 159.5-32 chr22 23138013 23138493 + 0.5 NA intron (NM_014433, intron 3 of 6) intron (NM_014433, intron 3 of 6) 3737 NM_014433 27156 Hs.526920 NM_014433 ENSG00000100218 RSPH14 RTDR1 radial spoke head 14 homolog protein-coding 174.667-65 chr8 89034551 89035013 + 0.5 NA Intergenic Intergenic -707299 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 173.167-13 chr14 42878693 42879109 + 0.5 NA Intergenic Intergenic 1272045 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 128-9 chr10 35923827 35924312 + 0.5 NA Intergenic Intergenic 145767 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 166.833-46 chr8 131929529 131929951 + 0.5 NA intron (NM_001323557, intron 1 of 22) intron (NM_001323557, intron 1 of 22) 12967 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 118.833-35 chr2 46432944 46433346 + 0.5 NA intron (NR_103805, intron 1 of 3) MLT1K|LTR|ERVL-MaLR 3955 NR_103805 101805491 Hs.304781 NR_103805 ENSG00000187600 LINC02583 - long intergenic non-protein coding RNA 2583 ncRNA 157.333-52 chr4 63399833 63400330 + 0.5 NA Intergenic Intergenic 1009369 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 200.167-25 chr2 59881285 59881893 + 0.5 NA Intergenic Intergenic 501447 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 125.5-51 chr3 120839210 120839547 + 0.5 NA Intergenic L1ME3A|LINE|L1 -3021 NR_135570 101926983 Hs.553055 NR_135570 ENSG00000243593 LINC02049 - long intergenic non-protein coding RNA 2049 ncRNA 213-13 chr19 37776024 37776833 + 0.5 NA intron (NM_001172690, intron 1 of 4) L1PB1|LINE|L1 3162 NM_001172691 126231 Hs.531262 NM_152360 ENSG00000189144 ZNF573 - zinc finger protein 573 protein-coding 159-3 chr1 78946130 78946597 + 0.5 NA exon (NM_022159, exon 3 of 15) exon (NM_022159, exon 3 of 15) 60367 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 155.667-46 chr20 48799887 48800425 + 0.5 NA intron (NM_020820, intron 1 of 39) MIR|SINE|MIR 27843 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 132.833-50 chr4 105241124 105241432 + 0.5 NA 3' UTR (NM_017628, exon 3 of 3) 3' UTR (NM_017628, exon 3 of 3) 94593 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 172-57 chr5 169613548 169614147 + 0.5 NA Intergenic L1PB1|LINE|L1 -23428 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 162.5-58 chr5 31593741 31594363 + 0.5 NA Intergenic AluSg|SINE|Alu -45079 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 129.333-94 chr8 13945006 13945362 + 0.5 NA Intergenic Intergenic 315494 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 209.333-44 chr5 160790632 160791167 + 0.5 NA intron (NM_001366652, intron 1 of 24) MLT1E2|LTR|ERVL-MaLR 61312 NM_001366652 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 211.333-20 chr17 49497971 49498802 + 0.5 NA intron (NM_002507, intron 1 of 5) intron (NM_002507, intron 1 of 5) 3093 NM_002507 4804 Hs.415768 NM_002507 ENSG00000064300 NGFR CD271|Gp80-LNGFR|TNFRSF16|p75(NTR)|p75NTR nerve growth factor receptor protein-coding 134-71 chr3 35882919 35883313 + 0.5 NA Intergenic Intergenic 138640 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 146.5-55 chr3 88995531 88995927 + 0.5 NA Intergenic Intergenic -111892 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 188.833-14 chr14 50480787 50481255 + 0.5 NA intron (NM_198794, intron 6 of 31) intron (NM_198794, intron 6 of 31) 51548 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 114.667-14 chr11 68497360 68497672 + 0.5 NA intron (NM_001352362, intron 2 of 24) AluJb|SINE|Alu 36764 NM_001352369 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 200.333-41 chr9 29125989 29126787 + 0.5 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 85911 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 148.667-53 chr4 77933183 77933580 + 0.5 NA intron (NM_020236, intron 7 of 8) L1MD2|LINE|L1 70551 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 123.333-109 chr8 106157039 106157504 + 0.5 NA Intergenic Intergenic -96768 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 132-29 chr14 87267180 87267747 + 0.5 NA Intergenic L3|LINE|CR1 361685 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 159.833-32 chr3 89294940 89295491 + 0.5 NA intron (NM_182644, intron 3 of 6) Tigger1|DNA|TcMar-Tigger 187594 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 145.333-60 chr5 29706709 29707128 + 0.5 NA Intergenic MLT2C1|LTR|ERVL -173642 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 130.833-19 chr14 82904774 82905227 + 0.5 NA Intergenic (TCTTTA)n|Simple_repeat|Simple_repeat 262368 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 115-30 chr15 76033608 76034137 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -21448 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 150.833-27 chr22 35261001 35261500 + 0.5 NA intron (NM_001362972, intron 1 of 9) AluSg4|SINE|Alu 3757 NM_001362972 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 138.667-20 chr12 24998712 24999025 + 0.5 NA intron (NM_001321724, intron 1 of 17) intron (NM_001321724, intron 1 of 17) 1293 NM_001321724 645177 Hs.569157 NM_001321724 LOC645177 - uncharacterized LOC645177 protein-coding 167-6 chr10 57104556 57104904 + 0.5 NA Intergenic MIR|SINE|MIR 199829 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 120-100 chr7 43349157 43349488 + 0.5 NA intron (NM_001287059, intron 4 of 27) AluSp|SINE|Alu 173220 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 136.667-16 chr12 43465101 43465429 + 0.5 NA intron (NM_025003, intron 9 of 38) MIRb|SINE|MIR 86938 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 127.667-39 chr2 58399678 58400120 + 0.5 NA Intergenic L1MC3|LINE|L1 -120854 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 113.167-4 chr1 235611447 235611775 + 0.5 NA intron (NM_001098721, intron 1 of 3) intron (NM_001098721, intron 1 of 3) 38173 NM_001098722 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 136.833-52 chr4 148245592 148246091 + 0.5 NA intron (NM_000901, intron 3 of 8) intron (NM_000901, intron 3 of 8) 196573 NM_001166104 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 114.833-28 chr17 79956703 79956976 + 0.5 NA intron (NM_019020, intron 3 of 11) intron (NM_019020, intron 3 of 11) -5986 NM_001271844 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 131.667-3 chr1 73945434 73945860 + 0.5 NA Intergenic Intergenic 252529 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 123.333-115 chr8 132304366 132304776 + 0.5 NA intron (NM_004519, intron 1 of 14) MER3|DNA|hAT-Charlie 142691 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 204.833-22 chr5 24167473 24168213 + 0.5 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 216495 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 167.5-62 chr8 91947412 91947803 + 0.5 NA Intergenic Intergenic 70073 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 141.5-10 chr10 100852113 100852555 + 0.5 NA Intergenic Intergenic -60629 NM_018121 55719 Hs.447458 NM_018121 ENSG00000119906 SLF2 C10orf6|FAM178A SMC5-SMC6 complex localization factor 2 protein-coding 137.667-71 chr3 169737558 169738063 + 0.5 NA Intergenic L1MA1|LINE|L1 27250 NR_001566 7012 Hs.436182 NR_001566 ENSG00000277925 TERC DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR telomerase RNA component ncRNA 143.667-104 chr8 110039062 110039395 + 0.5 NA Intergenic L1ME5|LINE|L1 -63457 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 122.833-34 chr15 98657219 98657523 + 0.5 NA intron (NM_000875, intron 1 of 20) intron (NM_000875, intron 1 of 20) -6150 NR_126453 104472848 Hs.349049 NR_126453 IRAIN IGF1R-AS IGF1R antisense imprinted non-protein coding RNA ncRNA 131.167-47 chr22 27738675 27739037 + 0.5 NA Intergenic L1MB7|LINE|L1 62900 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 177.667-31 chr18 62415023 62415506 + 0.5 NA Intergenic Intergenic 89954 NM_001270951 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 115-28 chr14 68145022 68145321 + 0.5 NA intron (NM_133509, intron 7 of 10) MIR3|SINE|MIR 321579 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 167-31 chr2 32929709 32930128 + 0.5 NA TTS (NR_027098) TTS (NR_027098) 2791 NR_027097 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 128.5-74 chr7 52642665 52642999 + 0.5 NA Intergenic Intergenic -392801 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 115.667-10 chr1 232400192 232400673 + 0.5 NA intron (NM_020808, intron 20 of 20) L2|LINE|L2 115176 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 133.167-41 chr3 121261669 121262089 + 0.5 NA intron (NM_001348343, intron 18 of 27) MLT1A0|LTR|ERVL-MaLR 212239 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 135.833-57 chr5 39493853 39494467 + 0.5 NA Intergenic Intergenic -26271 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 115.667-2 chr1 57571092 57571524 + 0.5 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -146387 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 156.833-60 chr8 124798864 124799250 + 0.5 NA Intergenic Intergenic -22928 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 119.667-104 chr9 35848019 35848389 + 0.5 NA TTS (NM_001363621) TTS (NM_001363621) 18976 NM_001363625 51754 Hs.9187 NM_016446 ENSG00000137103 TMEM8B C9orf127|FP588|LINC00950|NAG-5|NAG5|NGX6 transmembrane protein 8B protein-coding 195.333-60 chr8 121138029 121138830 + 0.5 NA Intergenic THE1A-int|LTR|ERVL-MaLR -326383 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 198-36 chr20 38923140 38923842 + 0.5 NA TTS (NM_001172735) TTS (NM_001172735) -2926 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83 member D protein-coding 115.667-73 chr3 59548929 59549488 + 0.5 NA Intergenic Intergenic 109289 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 209.667-6 chr10 57942209 57942852 + 0.5 NA Intergenic HAL1|LINE|L1 325364 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 242.167-15 chr3 190870382 190870974 + 0.5 NA Intergenic Intergenic -7252 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 159-29 chr17 53173732 53174149 + 0.5 NA Intergenic Intergenic 188435 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 133.167-63 chr7 73622350 73622871 + 0.5 NA intron (NM_032951, intron 1 of 16) AluJo|SINE|Alu 1912 NM_032951 51085 Hs.647055 NM_032951 ENSG00000009950 MLXIPL CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14 MLX interacting protein like protein-coding 162.667-46 chr20 59595938 59596579 + 0.5 NA intron (NM_001199505, intron 1 of 12) AluSz|SINE|Alu -8282 NM_080672 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 141.333-59 chr21 17873294 17873883 + 0.5 NA intron (NR_024354, intron 1 of 2) L1M5|LINE|L1 12020 NR_024354 54075 Hs.404306 NR_024354 CHODL-AS1 C21orf39|NCRNA00157 CHODL antisense RNA 1 ncRNA 128.167-24 chr14 48633854 48634245 + 0.5 NA Intergenic Intergenic -839035 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 125.833-57 chr3 84038974 84039300 + 0.5 NA Intergenic LTR16A1|LTR|ERVL 830438 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 258.833-6 chr13 105675665 105676614 + 0.5 NA Intergenic LTR37-int|LTR|ERV1 -30691 NR_120418 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 184.333-34 chr20 55539671 55540226 + 0.5 NA Intergenic Intergenic -112751 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 131.333-55 chr2 145263882 145264228 + 0.5 NA Intergenic Intergenic 596088 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 122.333-114 chr8 121757361 121757812 + 0.5 NA Intergenic Intergenic -116146 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 143.833-26 chr3 15773115 15773822 + 0.5 NA intron (NM_001349280, intron 2 of 26) AluSx|SINE|Alu -16921 NM_001195099 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 137.167-22 chr16 62640255 62640583 + 0.5 NA Intergenic Intergenic -603981 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 146.5-85 chr8 55026563 55026965 + 0.5 NA Intergenic MIR|SINE|MIR -75264 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 185.5-31 chr4 67159782 67160593 + 0.5 NA Intergenic Intergenic 261813 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 117.333-42 chr2 3728066 3728419 + 0.5 NA intron (NM_001365580, intron 3 of 9) intron (NM_001365580, intron 3 of 9) 21400 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 128.333-36 chr14 64553516 64553997 + 0.5 NA intron (NM_172365, intron 3 of 11) L1ME3|LINE|L1 3795 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 166.167-37 chr4 65163719 65164290 + 0.5 NA Intergenic Intergenic -159504 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 135.667-53 chr2 78392844 78393170 + 0.5 NA Intergenic L1P3|LINE|L1 -102276 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 131.333-37 chr17 69104021 69104446 + 0.5 NA intron (NM_080284, intron 20 of 38) intron (NM_080284, intron 20 of 38) -4601 NR_039750 100616316 NR_039750 ENSG00000283385 MIR4524A MIR4524|hsa-mir-4524a|mir-4524a microRNA 4524a ncRNA 124.5-73 chr8 28989682 28990098 + 0.5 NA intron (NM_001324384, intron 4 of 10) L1ME1|LINE|L1 98576 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 124.667-74 chr3 27405142 27405515 + 0.5 NA intron (NR_135542, intron 11 of 23) Tigger4a|DNA|TcMar-Tigger -35868 NM_152534 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 113.833-17 chr14 47118077 47118394 + 0.5 NA intron (NM_001113498, intron 5 of 16) intron (NM_001113498, intron 5 of 16) 225011 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 189.833-30 chr9 131745873 131746589 + 0.5 NA Intergenic AluSx|SINE|Alu -6287 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 136-83 chr8 136114202 136114583 + 0.5 NA Intergenic Intergenic -416406 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 140.833-44 chr3 133281925 133282369 + 0.5 NA intron (NM_001282865, intron 2 of 3) AluYm1|SINE|Alu -25026 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 135.333-91 chr8 128127417 128127763 + 0.5 NA Intergenic MIR1_Amn|SINE|MIR -22526 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 128.333-14 chr10 14166690 14167065 + 0.5 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 92593 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 148.333-74 chr4 66628610 66629125 + 0.5 NA Intergenic Intergenic 352043 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 120.167-51 chr22 28329417 28329733 + 0.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -130294 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 162.167-28 chr22 27456786 27457196 + 0.5 NA Intergenic L2c|LINE|L2 146340 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 124-51 chr2 121605400 121605800 + 0.5 NA intron (NM_015282, intron 2 of 38) intron (NM_015282, intron 2 of 38) 43862 NM_015282 23332 Hs.469840 NM_015282 ENSG00000074054 CLASP1 MAST1 cytoplasmic linker associated protein 1 protein-coding 115.833-56 chr5 45037446 45037689 + 0.5 NA Intergenic Intergenic 228620 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 127.333-18 chr11 45992364 45992699 + 0.5 NA intron (NR_147890, intron 5 of 18) AluY|SINE|Alu 69875 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 114-7 chr1 119326189 119326627 + 0.5 NA Intergenic Intergenic -1844 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 117.667-48 chr16 63688277 63688701 + 0.5 NA Intergenic L1M2|LINE|L1 1433574 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 150.333-25 chr11 132193505 132194042 + 0.5 NA intron (NM_016522, intron 2 of 6) L1PA16|LINE|L1 -90529 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 152.667 chr1 28853201 28853564 + 0.5 NA intron (NM_000911, intron 1 of 2) intron (NM_000911, intron 1 of 2) -33709 NM_001166005 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 133.333-99 chr5 124161662 124162146 + 0.5 NA intron (NR_125774, intron 4 of 5) MIR|SINE|MIR 276616 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 121.833-45 chr3 78118425 78118922 + 0.5 NA Intergenic Intergenic -69710 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 154.667-17 chr12 111526534 111527024 + 0.5 NA intron (NR_132311, intron 5 of 23) intron (NR_132311, intron 5 of 23) 72536 NM_002973 6311 Hs.76253 NM_002973 ENSG00000204842 ATXN2 ATX2|SCA2|TNRC13 ataxin 2 protein-coding 191.667-15 chr12 123955100 123955817 + 0.5 NA intron (NM_001304958, intron 1 of 5) intron (NM_001304958, intron 1 of 5) 16601 NM_001304959 80212 Hs.114111 NM_025140 ENSG00000119242 CCDC92 - coiled-coil domain containing 92 protein-coding 138.667-7 chr10 9728629 9729000 + 0.5 NA Intergenic L1PA15|LINE|L1 -329908 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 173.667-56 chr6 23015834 23016425 + 0.5 NA Intergenic Intergenic -298205 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 121.5-82 chr5 40584857 40585397 + 0.5 NA Intergenic MIR|SINE|MIR -94788 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 172.5-33 chr3 22339472 22339928 + 0.5 NA Intergenic Intergenic 382561 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 130.833-62 chr6 87723572 87724111 + 0.5 NA Intergenic Intergenic -21608 NM_018064 55122 Hs.485915 NM_018064 ENSG00000135334 AKIRIN2 C6orf166|FBI1|dJ486L4.2 akirin 2 protein-coding 139.833-47 chr2 226874422 226874859 + 0.5 NA intron (NM_001349069, intron 5 of 8) MLT1D|LTR|ERVL-MaLR 38586 NM_001167608 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 140.333-24 chr14 85792813 85793342 + 0.5 NA Intergenic Intergenic -141601 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 122.5-61 chr3 97110690 97110943 + 0.5 NA intron (NM_001080448, intron 3 of 17) AluSz|SINE|Alu 296222 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 168-16 chr14 42326048 42326412 + 0.5 NA Intergenic L1PA13|LINE|L1 719374 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 136-26 chr17 16950986 16951375 + 0.5 NA intron (NM_012452, intron 2 of 4) MIR|SINE|MIR -18004 NR_147084 96597 NR_147084 TBC1D27P TBC1D27 TBC1 domain family member 27, pseudogene pseudo 159.167-72 chr9 97716073 97716511 + 0.5 NA intron (NR_147055, intron 8 of 10) AluJo|SINE|Alu -18883 NR_149091 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 274.667-2 chr10 51234417 51235221 + 0.5 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -64754 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 150.833-56 chr9 18550923 18551381 + 0.5 NA intron (NM_052866, intron 3 of 12) L1MEd|LINE|L1 -22154 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 148.667-24 chr16 10775927 10776613 + 0.5 NA intron (NM_001318873, intron 2 of 7) AluSx1|SINE|Alu 32401 NM_001323597 4682 Hs.81469 NM_002484 ENSG00000103274 NUBP1 CIAO5|NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 141-26 chr14 65618100 65618612 + 0.5 NA intron (NM_004480, intron 4 of 9) (TTG)n|Simple_repeat|Simple_repeat 147254 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 125-16 chr10 115895741 115896070 + 0.5 NA intron (NM_207303, intron 28 of 28) L2c|LINE|L2 298884 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 129.333-101 chr8 89717259 89717756 + 0.5 NA non-coding (NR_125822, exon 5 of 5) non-coding (NR_125822, exon 5 of 5) 40204 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 141-72 chr5 67729038 67729421 + 0.5 NA Intergenic L1MEc|LINE|L1 -63984 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 118.833-8 chr10 91765965 91766483 + 0.5 NA Intergenic Intergenic 31972 NR_108070 100507633 Hs.291528 NR_108070 ENSG00000228701 TNKS2-AS1 - TNKS2 antisense RNA 1 (head to head) ncRNA 142.5-58 chr5 37014583 37015017 + 0.5 NA intron (NM_015384, intron 22 of 45) intron (NM_015384, intron 22 of 45) 138031 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 228.833-10 chr2 56880440 56881156 + 0.5 NA Intergenic Intergenic -695028 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 135.5-71 chr7 52663505 52663894 + 0.5 NA Intergenic Intergenic -371934 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 148.667-67 chr6 48577153 48577820 + 0.5 NA Intergenic Intergenic -508797 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 115.667-7 chr1 99866570 99866908 + 0.5 NA intron (NM_000028, intron 5 of 33) intron (NM_000028, intron 5 of 33) 15764 NM_000646 178 Hs.904 NM_000028 ENSG00000162688 AGL GDE amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase protein-coding 149.333-31 chr14 50274461 50274791 + 0.5 NA intron (NM_024884, intron 6 of 9) L1MA9|LINE|L1 25320 NR_039726 100616261 NR_039726 ENSG00000264712 MIR4504 - microRNA 4504 ncRNA 136.5-69 chr4 144388299 144388834 + 0.5 NA Intergenic L2a|LINE|L2 -247848 NM_002099 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 216.167-27 chr6 67518176 67518944 + 0.5 NA Intergenic Intergenic -536791 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 141.333-93 chr7 65369064 65369384 + 0.5 NA Intergenic MER57A-int|LTR|ERV1 -4575 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 168-9 chr12 12194977 12195378 + 0.5 NA intron (NM_002336, intron 3 of 22).2 L1MA5A|LINE|L1 71867 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 178.833-41 chr9 30896690 30897168 + 0.5 NA Intergenic Intergenic 484561 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 125.667-106 chr6 90953398 90953874 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -366564 NM_145331 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 150.167-57 chr6 72280642 72281160 + 0.5 NA intron (NM_001350435, intron 15 of 23) intron (NM_001350435, intron 15 of 23) 63960 NM_001350470 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 165-12 chr11 46116146 46116518 + 0.5 NA intron (NR_147890, intron 1 of 18) intron (NR_147890, intron 1 of 18) 4487 NM_001352028 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 142.833-31 chr17 69268439 69268768 + 0.5 NA intron (NM_018672, intron 21 of 37) LTR105_Mam|LTR|ERVL -23788 NM_080282 10349 Hs.25377 NM_080282 ENSG00000154263 ABCA10 EST698739 ATP binding cassette subfamily A member 10 protein-coding 192.667-52 chr7 96413144 96413777 + 0.5 NA Intergenic Intergenic 90063 NM_001201451 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 166.333-15 chr11 45973471 45973944 + 0.5 NA intron (NR_147890, intron 6 of 18) intron (NR_147890, intron 6 of 18) 51051 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 147.833-37 chr2 118941772 118942289 + 0.5 NA promoter-TSS (NM_006770) promoter-TSS (NM_006770) -139 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 132.5-75 chr5 75691793 75692155 + 0.5 NA intron (NM_152408, intron 6 of 10) intron (NM_152408, intron 6 of 10) 20481 NM_152408 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 148.833-17 chr14 41031934 41032292 + 0.5 NA intron (NR_109758, intron 3 of 3) L1PA17|LINE|L1 77402 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 147.5-21 chr12 19178369 19178985 + 0.5 NA intron (NM_019012, intron 3 of 25) intron (NM_019012, intron 3 of 25) -26648 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 185 chr1 64144987 64145564 + 0.5 NA intron (NM_005012, intron 7 of 8) intron (NM_005012, intron 7 of 8) -31484 NR_110665 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 145.667-90 chr6 102740681 102741394 + 0.5 NA Intergenic Intergenic 1342052 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 122.667-23 chr14 51259746 51260112 + 0.5 NA Intergenic L1MA7|LINE|L1 19682 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 127-71 chr4 2167655 2168098 + 0.5 NA intron (NM_181808, intron 13 of 25) AluSq2|SINE|Alu 74245 NM_181808 353497 Hs.368454 NM_181808 ENSG00000130997 POLN POL4P DNA polymerase nu protein-coding 224.167-24 chr6 9292124 9292793 + 0.5 NA Intergenic Intergenic 640249 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 124.167-70 chr5 24625876 24626285 + 0.5 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 18898 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 122.5-50 chr2 112129616 112129996 + 0.5 NA Intergenic AluYh3a3|SINE|Alu -8579 NM_153214 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 136.833-28 chr17 33587307 33587780 + 0.5 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -53783 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 191.167-5 chr12 69583307 69583756 + 0.5 NA Intergenic Intergenic -1192 NR_037476 100500868 NR_037476 ENSG00000283677 MIR3913-2 mir-3913-2 microRNA 3913-2 ncRNA 118.333-66 chr22 28203250 28203527 + 0.5 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -256481 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 117.833-66 chr6 41930555 41931035 + 0.5 NA intron (NM_004053, intron 4 of 6) intron (NM_004053, intron 4 of 6) 9296 NM_004053 705 Hs.106880 NM_004053 ENSG00000112578 BYSL BYSTIN|Enp1 bystin like protein-coding 166-60 chr7 7387138 7387632 + 0.5 NA intron (NM_001037763, intron 27 of 34) L1MC4|LINE|L1 132231 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 130.5-57 chr4 38328122 38328648 + 0.5 NA Intergenic Intergenic -38529 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 115.5-41 chr15 82733069 82733439 + 0.5 NA intron (NR_036446, intron 2 of 2) MER41B|LTR|ERV1 6526 NR_036446 283693 Hs.560399 NR_036446 ACTG1P17 - actin gamma 1 pseudogene 17 pseudo 150.5-43 chr2 102094358 102094785 + 0.5 NA intron (NM_001320978, intron 1 of 11) intron (NM_001320978, intron 1 of 11) -10033 NM_001320980 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 146.667-99 chrX 14857557 14857923 + 0.5 NA intron (NM_001018113, intron 5 of 9) intron (NM_001018113, intron 5 of 9) 15329 NM_001324162 2187 Hs.554740 NM_152633 ENSG00000181544 FANCB FA2|FAAP90|FAAP95|FAB|FACB FA complementation group B protein-coding 125.167-6 chr1 221443350 221443877 + 0.5 NA Intergenic Intergenic -107317 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 180.167-18 chr15 88117998 88118512 + 0.5 NA intron (NM_001007156, intron 13 of 15) intron (NM_001007156, intron 13 of 15) 87719 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 124-18 chr11 29016497 29016813 + 0.5 NA Intergenic L1PA7|LINE|L1 -539107 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 128.5-88 chr9 124712453 124712842 + 0.5 NA intron (NM_033334, intron 2 of 9) intron (NM_033334, intron 2 of 9) 18937 NR_029782 406956 NR_029782 ENSG00000207737 MIR181B2 MIRN181B2|mir-181b-2 microRNA 181b-2 ncRNA 127.667-51 chr20 35523784 35524088 + 0.5 NA intron (NR_026933, intron 5 of 10) intron (NR_026933, intron 5 of 10) 5716 NR_026933 140873 Hs.158680 NM_080828 ENSG00000125975 C20orf173 dJ477O4.4 chromosome 20 open reading frame 173 protein-coding 115.333-67 chr3 5983219 5983509 + 0.5 NA Intergenic Intergenic -733109 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 165-61 chr8 107775137 107775583 + 0.5 NA Intergenic Intergenic -277442 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 140.667-61 chr4 36425214 36425586 + 0.5 NA TTS (NR_031701) TTS (NR_031701) 1028 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 151.5-32 chr18 72113283 72113954 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -331392 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 114.333-63 chr2 29259635 29260135 + 0.5 NA intron (NM_004304, intron 11 of 28) HAL1M8|LINE|L1 -35985 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 138-108 chr8 111290464 111290832 + 0.5 NA Intergenic HAL1M8|LINE|L1 -54445 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 126.833-73 chr9 91047322 91047755 + 0.5 NA Intergenic MIR|SINE|MIR 27594 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 114-17 chr10 76022517 76023012 + 0.5 NA intron (NR_131178, intron 3 of 7) L2c|LINE|L2 240003 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 138.833-82 chr7 56070311 56070689 + 0.5 NA intron (NM_001042468, intron 2 of 8) AluJb|SINE|Alu 6214 NM_001042468 25870 Hs.279696 NM_015411 ENSG00000129103 SUMF2 pFGE sulfatase modifying factor 2 protein-coding 115.167-26 chr12 15992804 15993179 + 0.5 NA intron (NM_015954, intron 6 of 8) intron (NM_015954, intron 6 of 8) 81659 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 127.667-31 chr16 59682039 59682339 + 0.5 NA Intergenic L2a|LINE|L2 73002 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 114.667-103 chr5 100802788 100803305 + 0.5 NA Intergenic Intergenic 13519 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 121.333-119 chr9 124691523 124691765 + 0.5 NA promoter-TSS (NR_029611) promoter-TSS (NR_029611) -798 NR_029611 406954 NR_029611 ENSG00000207595 MIR181A2 MIRN181A|MIRN181A2|hsa-mir-181a-2|mir-181a-2 microRNA 181a-2 ncRNA 122.667-36 chr17 61034232 61034795 + 0.5 NA intron (NM_001330413, intron 17 of 25) intron (NM_001330413, intron 17 of 25) 333191 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 135.167-89 chr8 72403341 72403997 + 0.5 NA Intergenic Intergenic -133556 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 129.5-20 chr12 33399433 33399929 + 0.5 NA intron (NM_198992, intron 3 of 6) intron (NM_198992, intron 3 of 6) 40138 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 135-10 chr10 17611800 17612093 + 0.5 NA intron (NM_014241, intron 1 of 6) AluY|SINE|Alu 5428 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 114.333-119 chr8 91231122 91231567 + 0.5 NA intron (NM_001282357, intron 2 of 18) intron (NM_001282357, intron 2 of 18) -17975 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 148-32 chr15 59976179 59976610 + 0.5 NA Intergenic Intergenic -27917 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 197.167-18 chr17 39005489 39006171 + 0.5 NA Intergenic AluSx|SINE|Alu 21280 NR_135645 105371766 Hs.311469 NR_135645 ENSG00000266013 LINC02079 - long intergenic non-protein coding RNA 2079 ncRNA 179-47 chr6 63682201 63682814 + 0.5 NA intron (NM_001370350, intron 3 of 14) HAL1|LINE|L1 35981 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 215.667-11 chr11 60432956 60433794 + 0.5 NA intron (NM_023945, intron 3 of 4) intron (NM_023945, intron 3 of 4) 3803 NM_023945 64232 Hs.178066 NM_023945 ENSG00000166930 MS4A5 CD20-L2|CD20L2|TETM4 membrane spanning 4-domains A5 protein-coding 121.167-18 chr12 10696867 10697147 + 0.5 NA Intergenic Intergenic -22955 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 199.167-24 chr3 86916591 86917103 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR 74302 NM_001320494 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 154-59 chr4 35070819 35071235 + 0.5 NA Intergenic L1MC1|LINE|L1 -801280 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 180.5-14 chr12 17517596 17518121 + 0.5 NA Intergenic Intergenic 71220 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 142.667-41 chr2 11003429 11003847 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 91704 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 139.167-23 chr15 47272053 47272522 + 0.5 NA intron (NM_001198999, intron 1 of 19) LTR37A|LTR|ERV1 88198 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 146.333-79 chr5 40503866 40504287 + 0.5 NA Intergenic Intergenic -175839 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 116.667-90 chr5 144486492 144486903 + 0.5 NA Intergenic Intergenic 281306 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 147 chr1 9941130 9941613 + 0.5 NA intron (NM_001316974, intron 2 of 7) AluSx1|SINE|Alu -1552 NM_001297778 64802 Hs.633762 NM_022787 ENSG00000173614 NMNAT1 LCA9|NMNAT|PNAT1 nicotinamide nucleotide adenylyltransferase 1 protein-coding 128.833-60 chr3 162205210 162205563 + 0.5 NA Intergenic Intergenic 708578 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 147.833-68 chr8 126603791 126604323 + 0.5 NA Intergenic Charlie7|DNA|hAT-Charlie -45579 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 128.5-61 chr5 101539880 101540304 + 0.5 NA Intergenic L1PA15|LINE|L1 -636810 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 124.333-75 chr5 26426498 26426884 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 611895 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 123.833-54 chr6 123503500 123503799 + 0.5 NA 3' UTR (NM_001256021, exon 8 of 8) 3' UTR (NM_001256021, exon 8 of 8) 64045 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 178.5-70 chr8 87035829 87036250 + 0.5 NA intron (NM_173538, intron 4 of 10) MLT1J|LTR|ERVL-MaLR 169624 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 154.833-62 chr8 142778355 142778805 + 0.5 NA promoter-TSS (NM_177457) promoter-TSS (NM_177457) -708 NM_023946 111188157 NM_023946 ENSG00000284505 LYNX1-SLURP2 - LYNX1-SLURP2 readthrough protein-coding 158-24 chr2 117015381 117016016 + 0.5 NA Intergenic L1MB8|LINE|L1 -798993 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 138.333-8 chr1 157392651 157392971 + 0.5 NA Intergenic AluSz6|SINE|Alu 159704 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 159.333-73 chr9 127356202 127356699 + 0.5 NA intron (NR_104591, intron 20 of 26) intron (NR_104591, intron 20 of 26) -40688 NM_001271711 29988 Hs.179522 NM_014580 ENSG00000136856 SLC2A8 GLUT8|GLUTX1 solute carrier family 2 member 8 protein-coding 116.667-19 chr11 37564711 37565235 + 0.5 NA Intergenic L1MB7|LINE|L1 -373628 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 145.833-48 chr3 73897485 73897880 + 0.5 NA Intergenic Intergenic 88438 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 168.833-47 chr5 88239521 88239858 + 0.5 NA intron (NM_001349403, intron 1 of 10) intron (NM_001349403, intron 1 of 10) 29156 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 155.167-16 chr15 64413740 64414271 + 0.5 NA intron (NR_135855, intron 7 of 11) intron (NR_135855, intron 7 of 11) 26169 NM_016213 9325 Hs.500340 NM_016213 ENSG00000103671 TRIP4 ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5 thyroid hormone receptor interactor 4 protein-coding 139.833 chr1 69854198 69854626 + 0.5 NA intron (NM_001370785, intron 7 of 26) AluJr4|SINE|Alu -64910 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 201.5-39 chr9 34443618 34444288 + 0.5 NA intron (NM_001184942, intron 1 of 5) intron (NM_001184942, intron 1 of 5) 14617 NM_001184942 203259 Hs.493771 NM_147202 ENSG00000164970 FAM219A C9orf25 family with sequence similarity 219 member A protein-coding 144-73 chr8 52328753 52329117 + 0.5 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) -74443 NM_001352842 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 180.667-77 chr8 139118358 139118890 + 0.5 NA Intergenic Intergenic -204583 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 183.5-5 chr10 62496972 62497450 + 0.5 NA intron (NM_199451, intron 4 of 7) MIRb|SINE|MIR -23237 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 216-24 chr4 41245057 41245546 + 0.5 NA intron (NR_102709, intron 1 of 2) intron (NR_102709, intron 1 of 2) 11426 NR_102709 101410542 Hs.518731 NR_102709 ENSG00000251173 UCHL1-AS1 - UCHL1 antisense RNA 1 (head to head) ncRNA 142.833-65 chr6 35740750 35741082 + 0.5 NA intron (NM_145028, intron 3 of 5) AluJb|SINE|Alu 3884 NM_001286574 221481 Hs.533066 NM_145028 ENSG00000157343 ARMC12 C6orf81 armadillo repeat containing 12 protein-coding 207-39 chr4 79725308 79726065 + 0.5 NA Intergenic Intergenic -101785 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 163.833-18 chr14 20453702 20454267 + 0.5 NA intron (NM_017807, intron 1 of 10) AluSx|SINE|Alu 828 NM_017807 55644 Hs.525196 NM_017807 ENSG00000092094 OSGEP GAMOS3|GCPL1|KAE1|OSGEP1|PRSMG1|TCS3 O-sialoglycoprotein endopeptidase protein-coding 130.167-78 chr9 32999276 32999610 + 0.5 NA intron (NM_001369005, intron 1 of 8) intron (NM_001369005, intron 1 of 8) 2133 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 172.833-42 chr5 18198977 18199504 + 0.5 NA Intergenic MER4A1|LTR|ERV1 391966 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 138.333-6 chr1 89223304 89223723 + 0.5 NA Intergenic L1PA14|LINE|L1 -24571 NM_052941 115361 Hs.409925 NM_052941 ENSG00000162654 GBP4 Mpa2 guanylate binding protein 4 protein-coding 154-8 chr10 44009708 44010235 + 0.5 NA Intergenic Intergenic 97569 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 119.5-51 chr2 158918879 158919171 + 0.5 NA Intergenic LTR31|LTR|ERV1 -49609 NM_001350062 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 128.5-81 chr8 83916645 83916938 + 0.5 NA Intergenic Intergenic -265996 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 169.833-38 chr8 86623445 86623913 + 0.5 NA intron (NM_019098, intron 13 of 17) MLT1A1|LTR|ERVL-MaLR 109244 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 155.833-42 chr3 175149856 175150350 + 0.5 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) -34861 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 130.5-51 chr3 108759838 108760222 + 0.5 NA Intergenic L2a|LINE|L2 -2747 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 159.167-53 chr5 24143235 24143686 + 0.5 NA intron (NR_131245, intron 4 of 4) L3|LINE|CR1 192112 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 147.5-86 chr8 140258105 140258670 + 0.5 NA intron (NM_001160372, intron 15 of 22) intron (NM_001160372, intron 15 of 22) -157852 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 128.833-49 chr2 221995286 221995614 + 0.5 NA Intergenic L1MB8|LINE|L1 -302697 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 137.333-94 chr7 82600937 82601362 + 0.5 NA Intergenic Intergenic -157193 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 162.833-32 chr4 53245954 53246438 + 0.5 NA intron (NM_152540, intron 4 of 8) L1PREC2|LINE|L1 119865 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 172-49 chr4 71605526 71605933 + 0.5 NA Intergenic L1MC4a|LINE|L1 178350 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 128.833-33 chr16 82345440 82345807 + 0.5 NA Intergenic Intergenic -175399 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 133.667-27 chr14 70602991 70603293 + 0.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -2452 NM_001284211 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 115-70 chr6 39520301 39520762 + 0.5 NA intron (NM_001289021, intron 12 of 21) MamRTE1|LINE|RTE-BovB -89141 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 185.833 chr1 41008327 41008896 + 0.5 NA intron (NR_125440, intron 14 of 17) intron (NR_125440, intron 14 of 17) -5979 NR_037868 100507178 Hs.660056 NR_037868 ENSG00000281207 SLFNL1-AS1 - SLFNL1 antisense RNA 1 ncRNA 131.833-3 chr1 217186309 217186645 + 0.5 NA Intergenic L1ME3G|LINE|L1 -48775 NM_001243511 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 144.167-29 chr17 57274821 57275282 + 0.5 NA intron (NM_001322250, intron 5 of 13) intron (NM_001322250, intron 5 of 13) 18032 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 134.333-67 chr2 204976978 204977402 + 0.5 NA intron (NM_205863, intron 3 of 21) intron (NM_205863, intron 3 of 21) 431715 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 142.833-57 chr5 34016397 34016859 + 0.5 NA intron (NR_037951, intron 6 of 8) MER65D|LTR|ERV1 -8578 NM_014324 23600 Hs.508343 NM_014324 ENSG00000242110 AMACR AMACRD|CBAS4|P504S|RACE|RM alpha-methylacyl-CoA racemase protein-coding 153.167-38 chr4 97370732 97371358 + 0.5 NA intron (NR_102713, intron 1 of 5) MER77B|LTR|ERVL 4119 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 172.667-61 chr4 70024739 70025311 + 0.5 NA Intergenic L2|LINE|L2 -3434 NM_000200 3347 Hs.654442 NM_000200 ENSG00000205649 HTN3 HIS2|HTN2|HTN5|PB histatin 3 protein-coding 120.667-93 chr5 24847761 24848016 + 0.5 NA Intergenic Tigger2|DNA|TcMar-Tigger -7305 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 161-26 chr2 5675138 5675544 + 0.5 NA intron (NR_110580, intron 2 of 4) AluJo|SINE|Alu 15777 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 137-83 chr6 57126688 57127051 + 0.5 NA intron (NM_015555, intron 4 of 13) intron (NM_015555, intron 4 of 13) 36681 NM_001031623 26036 Hs.485628 NM_015555 ENSG00000112200 ZNF451 COASTER|dJ417I1.1 zinc finger protein 451 protein-coding 133.667-54 chr2 153178923 153179352 + 0.5 NA Intergenic L1MA7|LINE|L1 299625 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 113.833-60 chr4 33348573 33348924 + 0.5 NA Intergenic Intergenic 691145 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 118.833-16 chr12 123573648 123574222 + 0.5 NA Intergenic L2c|LINE|L2 10392 NR_110049 101927415 Hs.636524 NR_110049 TMED2-DT - TMED2 divergent transcript ncRNA 141.167-31 chr17 59501638 59502021 + 0.5 NA intron (NR_110813, intron 2 of 2) intron (NR_110813, intron 2 of 2) 25028 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 133.833-47 chr3 115879446 115879875 + 0.5 NA intron (NM_001318915, intron 3 of 8) intron (NM_001318915, intron 3 of 8) 25466 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 185.5-39 chr5 149323773 149324254 + 0.5 NA intron (NM_152406, intron 15 of 18) Charlie15a|DNA|hAT-Charlie -21486 NM_152407 134266 Hs.511816 NM_152407 ENSG00000164284 GRPEL2 Mt-GrpE#2 GrpE like 2, mitochondrial protein-coding 198.333-14 chr15 98845881 98846640 + 0.5 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 61834 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 187.333-54 chr3 122230153 122230811 + 0.5 NA intron (NM_001178065, intron 1 of 6) intron (NM_001178065, intron 1 of 6) 46155 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 130.167-69 chr7 2763404 2763767 + 0.5 NA promoter-TSS (NM_001282440) promoter-TSS (NM_001282440) -445 NM_001282440 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 153.167-64 chr9 120617859 120618195 + 0.5 NA intron (NM_001080497, intron 3 of 5) L2|LINE|L2 -37857 NM_001272039 55755 Hs.269560 NM_018249 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 188-27 chr2 9172078 9172748 + 0.5 NA Intergenic L1ME1|LINE|L1 -34352 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 131-33 chr2 181612276 181612775 + 0.5 NA intron (NR_027690, intron 1 of 11) L1ME2|LINE|L1 44580 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 125-25 chr12 128524441 128524980 + 0.5 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 230618 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 155.833-22 chr17 31690083 31690630 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 114945 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 194.833-23 chr5 81483195 81483756 + 0.5 NA intron (NM_001256733, intron 5 of 15) intron (NM_001256733, intron 5 of 15) -89341 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 115.167-97 chr7 11201782 11202127 + 0.5 NA Intergenic Intergenic 228082 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 114.333-108 chr6 76656533 76656793 + 0.5 NA Intergenic AluSx3|SINE|Alu -63040 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 129.167-89 chr9 13122557 13122934 + 0.5 NA intron (NM_003829, intron 36 of 45) AluSx1|SINE|Alu -150112 NR_132976 106635615 NR_132976 SNORD137 - small nucleolar RNA, C/D box 137 snoRNA 145-15 chr10 108491364 108491839 + 0.5 NA Intergenic Intergenic -422308 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 149.5-45 chr3 59582681 59583252 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR 75531 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 157.333-14 chr12 26856430 26856828 + 0.5 NA Intergenic L2|LINE|L2 -23435 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 124.667-5 chr1 156831732 156832276 + 0.5 NA intron (NM_001007792, intron 1 of 16) intron (NM_001007792, intron 1 of 16) -15156 NM_003975 9047 Hs.103527 NM_003975 ENSG00000027869 SH2D2A F2771|SCAP|TSAD|VRAP SH2 domain containing 2A protein-coding 122.333-118 chr9 31108125 31108528 + 0.5 NA Intergenic Intergenic 273164 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 119.333-88 chr5 133297220 133297497 + 0.5 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 130348 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 161.333-4 chr10 42090914 42091435 + 0.5 NA Intergenic Intergenic 276871 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 138.667-24 chr13 18914073 18914528 + 0.5 NA intron (NR_104118, intron 5 of 5) L1PB1|LINE|L1 8861 NR_104118 100652856 Hs.549878 NR_104118 LINC00408 - long intergenic non-protein coding RNA 408 ncRNA 223.167-6 chr4 43126011 43126533 + 0.5 NA Intergenic Intergenic 233006 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 133-70 chr4 128717756 128718242 + 0.5 NA Intergenic AluSx|SINE|Alu -91701 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 211.333-19 chr17 21218703 21219359 + 0.5 NA Intergenic L1ME4b|LINE|L1 -4436 NM_003876 8834 Hs.592945 NM_003876 ENSG00000178307 TMEM11 C17orf35|PM1|PMI transmembrane protein 11 protein-coding 123.333-104 chr7 86053561 86053956 + 0.5 NA Intergenic L1PA15-16|LINE|L1 -590151 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 128.833-63 chr4 48123850 48124224 + 0.5 NA intron (NM_003328, intron 1 of 14) intron (NM_003328, intron 1 of 14) 10213 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 123.667-121 chr9 74504493 74504910 + 0.5 NA intron (NM_006914, intron 1 of 9) intron (NM_006914, intron 1 of 9) -6148 NR_125791 103752585 Hs.635501 NR_125791 RORB-AS1 - RORB antisense RNA 1 ncRNA 145.667-54 chr20 20775448 20775859 + 0.5 NA Intergenic AluSq2|SINE|Alu -63009 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 127.667-76 chr5 152712573 152712845 + 0.5 NA intron (NR_109877, intron 3 of 4) intron (NR_109877, intron 3 of 4) 259640 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 114.5-48 chr2 51187443 51187712 + 0.5 NA intron (NR_135237, intron 2 of 10) MER39|LTR|ERV1 154976 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 116.167-37 chr2 170147975 170148480 + 0.5 NA Intergenic MER58A|DNA|hAT-Charlie -29920 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 310.333-2 chr14 52192746 52193829 + 0.5 NA Intergenic Intergenic -74411 NM_000953 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 122.333-16 chr10 108370856 108371243 + 0.5 NA Intergenic L1PA16|LINE|L1 -301756 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 121.5-98 chr7 38451315 38451728 + 0.5 NA intron (NM_001635, intron 11 of 20) intron (NM_001635, intron 11 of 20) 109944 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 160.833-15 chr11 81428052 81428687 + 0.5 NA Intergenic LOR1b|LTR|ERV1 462467 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 185-33 chr22 40942538 40943001 + 0.5 NA Intergenic MER2|DNA|TcMar-Tigger -8609 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 121.167-72 chr6 37555882 37556328 + 0.5 NA promoter-TSS (NR_039669) promoter-TSS (NR_039669) -683 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 145.833-58 chr4 58500165 58500767 + 0.5 NA Intergenic Intergenic 35862 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 122-87 chr8 121548014 121548335 + 0.5 NA Intergenic L2c|LINE|L2 -91172 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 285.833-10 chr8 77522153 77523162 + 0.5 NA Intergenic Intergenic 71960 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 148-36 chr17 68953002 68953461 + 0.5 NA intron (NM_001288985, intron 1 of 39) intron (NM_001288985, intron 1 of 39) 2161 NM_007168 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 131.833-67 chr8 15104270 15104874 + 0.5 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 133859 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 134.667-47 chr2 16086012 16086462 + 0.5 NA TTS (NR_126559) TTS (NR_126559) 35810 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 116.333-31 chr12 26814599 26814909 + 0.5 NA intron (NM_002223, intron 1 of 56) intron (NM_002223, intron 1 of 56) 18440 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 121.333-81 chr5 25896835 25897247 + 0.5 NA Intergenic Intergenic 706088 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 205.333-6 chr10 17732780 17733517 + 0.5 NA Intergenic MER31B|LTR|ERV1 -19053 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 142-98 chrX 127545536 127546041 + 0.5 NA Intergenic Intergenic 506615 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 115.167-99 chr7 52419974 52420248 + 0.5 NA Intergenic Intergenic -615522 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 152.833-68 chr8 18287572 18288062 + 0.5 NA Intergenic Intergenic 66149 NM_001160174 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 233.5-16 chr4 64100345 64101096 + 0.5 NA Intergenic Intergenic 308730 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 210-23 chr3 37701540 37702161 + 0.5 NA intron (NM_002207, intron 18 of 27) intron (NM_002207, intron 18 of 27) 159930 NR_110532 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 147.833-28 chr18 55775494 55775912 + 0.5 NA non-coding (NR_145453, exon 2 of 2) non-coding (NR_145453, exon 2 of 2) 4718 NR_145453 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 141-54 chr21 17326552 17327054 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -112087 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 122.833-23 chr14 43394203 43394517 + 0.5 NA Intergenic Intergenic 1112923 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 172.833-2 chr1 63484168 63484838 + 0.5 NA intron (NM_001347145, intron 3 of 7) L1MEd|LINE|L1 38770 NM_014288 23421 Hs.166539 NM_014288 ENSG00000142856 ITGB3BP CENP-R|CENPR|HSU37139|NRIF3|TAP20 integrin subunit beta 3 binding protein protein-coding 156.833-47 chr5 121453897 121454479 + 0.5 NA Intergenic LTR16A|LTR|ERVL 131638 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 124.167-9 chr10 81980712 81981272 + 0.5 NA intron (NR_163253, intron 2 of 10) MLT1B|LTR|ERVL-MaLR 103305 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 150.167-7 chr11 60300185 60300827 + 0.5 NA intron (NM_024021, intron 4 of 7) AluY|SINE|Alu 19840 NM_001243266 51338 Hs.325960 NM_024021 ENSG00000110079 MS4A4A 4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 membrane spanning 4-domains A4A protein-coding 124.167-66 chr4 141425412 141425737 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -92957 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 162.5-22 chr15 92029207 92029562 + 0.5 NA intron (NR_135775, intron 2 of 10) intron (NR_135775, intron 2 of 10) 175080 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 196.167-15 chr15 67727902 67728522 + 0.5 NA intron (NM_001206804, intron 17 of 21) intron (NM_001206804, intron 17 of 21) -97297 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 148.333-8 chr1 180246171 180246545 + 0.5 NA intron (NM_033343, intron 1 of 5) intron (NM_033343, intron 1 of 5) 16094 NM_033343 89884 Hs.658487 NM_033343 ENSG00000121454 LHX4 CPHD4 LIM homeobox 4 protein-coding 299.167-8 chr5 111617128 111617941 + 0.5 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -104937 NM_001308057 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 214.167-15 chr21 34588073 34588726 + 0.5 NA intron (NM_004414, intron 1 of 3) L1ME3A|LINE|L1 25444 NM_001285389 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 188.667-62 chr7 107754761 107755282 + 0.5 NA intron (NR_024199, intron 5 of 6) AluJr4|SINE|Alu -10440 NR_144537 101927974 Hs.432792 NR_144536 ENSG00000241764 LOC101927974 - uncharacterized LOC101927974 ncRNA 120.667-48 chr16 12126586 12126904 + 0.5 NA intron (NM_032167, intron 12 of 20) intron (NM_032167, intron 12 of 20) 150011 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 145-60 chr4 25551322 25551671 + 0.5 NA intron (NR_134641, intron 2 of 3) intron (NR_134641, intron 2 of 3) 17850 NR_134641 101929161 Hs.125638 NR_134641 LOC101929161 - uncharacterized LOC101929161 ncRNA 123.5-72 chr6 87913501 87913961 + 0.5 NA Intergenic Intergenic 128871 NR_110869 101928911 Hs.571178 NR_110869 LOC101928911 - uncharacterized LOC101928911 ncRNA 141.167-5 chr1 186232973 186233399 + 0.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -63087 NM_001127708 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 129.333-112 chr9 138036937 138037250 + 0.5 NA intron (NM_001243812, intron 20 of 45) L1MC5a|LINE|L1 7978 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 189.167-20 chr17 65147394 65147872 + 0.5 NA intron (NM_003835, intron 1 of 18) AluSz|SINE|Alu 10263 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 129.667-17 chr12 12976271 12976756 + 0.5 NA intron (NM_015987, intron 3 of 3) intron (NM_015987, intron 3 of 3) -3324 NR_038920 100506314 Hs.127718 NR_038920 ENSG00000247498 GPRC5D-AS1 - GPRC5D and HEBP1 antisense RNA 1 ncRNA 154-12 chr10 90147096 90147531 + 0.5 NA Intergenic Intergenic -189940 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 150.667-64 chr3 81679269 81679630 + 0.5 NA intron (NM_000158, intron 2 of 15) MER105|DNA|hAT-Charlie 82196 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 123.667-115 chr8 121260584 121261003 + 0.5 NA Intergenic Intergenic -378553 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 121.833-4 chr1 184618953 184619265 + 0.5 NA intron (NM_030806, intron 5 of 5) intron (NM_030806, intron 5 of 5) 135749 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 164.333-22 chr14 25816293 25816765 + 0.5 NA Intergenic Intergenic 736901 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 121-31 chr16 71645054 71645457 + 0.5 NA 3' UTR (NM_001289003, exon 18 of 18) 3' UTR (NM_001289003, exon 18 of 18) 19071 NM_052858 91862 Hs.513706 NM_052858 ENSG00000140832 MARVELD3 MARVD3|MRVLDC3 MARVEL domain containing 3 protein-coding 141.167-16 chr11 95112149 95112511 + 0.5 NA intron (NM_015036, intron 1 of 1) intron (NM_015036, intron 1 of 1) 22484 NM_015036 23052 Hs.167115 NM_015036 ENSG00000149218 ENDOD1 - endonuclease domain containing 1 protein-coding 128.833-10 chr1 188082675 188083100 + 0.5 NA Intergenic Intergenic 639259 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 141.333-39 chr16 73474409 73474718 + 0.5 NA Intergenic (GAGGTG)n|Simple_repeat|Simple_repeat 87758 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 120.833-45 chr3 78182670 78182984 + 0.5 NA Intergenic Intergenic -133864 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 121.333-54 chr2 222096871 222097182 + 0.5 NA Intergenic Intergenic -201121 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 122.667-22 chr14 20752918 20753301 + 0.5 NA Intergenic MER41-int|LTR|ERV1 7222 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 124.5-13 chr11 39858445 39858819 + 0.5 NA Intergenic Intergenic 434498 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 150.667-23 chr12 76820015 76820327 + 0.5 NA intron (NM_015336, intron 7 of 16) Charlie4z|DNA|hAT-Charlie 55913 NM_001359626 23390 Hs.4014 NM_015336 ENSG00000186908 ZDHHC17 DHHC-17|HIP14|HIP3|HSPC294|HYPH zinc finger DHHC-type containing 17 protein-coding 121-101 chrX 138861322 138861643 + 0.5 NA intron (NM_001139500, intron 2 of 6) intron (NM_001139500, intron 2 of 6) 6073 NM_001139502 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 131-35 chr20 60601210 60601503 + 0.5 NA Intergenic Intergenic 36794 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 178.333 chr1 111597990 111598753 + 0.5 NA TTS (NR_034126) TTS (NR_034126) 9947 NR_034126 100129269 Hs.689728 NR_034126 LINC01160 - long intergenic non-protein coding RNA 1160 ncRNA 161.167-4 chr1 116393459 116393865 + 0.5 NA exon (NM_000701, exon 12 of 23) exon (NM_000701, exon 12 of 23) 10292 NM_001160234 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 158.667-9 chr10 66745982 66746501 + 0.5 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -179795 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 113.5-59 chr22 19706682 19707126 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -7599 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 159.5-2 chr1 151807029 151807476 + 0.5 NA 3' UTR (NM_001001523, exon 10 of 10) 3' UTR (NM_001001523, exon 10 of 10) -1810 NM_001004432 339398 Hs.591477 NM_001004432 ENSG00000213171 LINGO4 DAAT9248|LRRN6D|PRO34002 leucine rich repeat and Ig domain containing 4 protein-coding 156-96 chr9 134302248 134302655 + 0.5 NA Intergenic L1ME4a|LINE|L1 -7054 NR_146518 105376310 Hs.573484 NR_146518 ENSG00000223729 LINC02247 - long intergenic non-protein coding RNA 2247 ncRNA 164.667-15 chr11 101597979 101598585 + 0.5 NA Intergenic L1M5|LINE|L1 -14275 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 133.5-14 chr10 102014761 102015146 + 0.5 NA intron (NM_024541, intron 8 of 25) intron (NM_024541, intron 8 of 25) 41220 NM_024541 79591 Hs.16004 NM_024541 ENSG00000120029 ARMH3 C10orf76 armadillo like helical domain containing 3 protein-coding 160.5-40 chr4 100252371 100252843 + 0.5 NA Intergenic AluJo|SINE|Alu -62139 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 184.333-8 chr13 47840834 47841572 + 0.5 NA Intergenic Intergenic 91419 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 134.5-46 chr2 97662886 97663328 + 0.5 NA intron (NM_005735, intron 1 of 10) intron (NM_005735, intron 1 of 10) 937 NM_005735 10120 Hs.98791 NM_005735 ENSG00000115073 ACTR1B ARP1B|CTRN2|PC3 actin related protein 1B protein-coding 143.833-16 chr19 43839719 43840061 + 0.5 NA intron (NM_181845, intron 6 of 6) L1M4|LINE|L1 12569 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 141.5-79 chr6 98423079 98423479 + 0.5 NA Intergenic Intergenic 398748 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 140.333-69 chr5 100237155 100237582 + 0.5 NA Intergenic L1PREC2|LINE|L1 150886 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 153.333-46 chr22 23723177 23723587 + 0.5 NA Intergenic AluSz|SINE|Alu -5959 NR_024448 91316 Hs.148656 NR_024448 ENSG00000228315 GUSBP11 - GUSB pseudogene 11 pseudo 230-20 chr21 18457695 18458597 + 0.5 NA Intergenic Intergenic -54361 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 156.333-50 chr2 214438646 214439336 + 0.5 NA intron (NM_001080500, intron 3 of 3) intron (NM_001080500, intron 3 of 3) 27937 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 125.333-65 chr2 99059241 99059663 + 0.5 NA intron (NR_146001, intron 15 of 18) AluSx1|SINE|Alu 81728 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 152.167-55 chr4 147474427 147474927 + 0.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -6240 NM_001166055 1909 Hs.183713 NM_001957 ENSG00000151617 EDNRA ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR endothelin receptor type A protein-coding 123-24 chr15 67722112 67722429 + 0.5 NA intron (NM_002757, intron 16 of 20) intron (NM_002757, intron 16 of 20) -103239 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 113.167-32 chr18 58425025 58425451 + 0.5 NA Intergenic Intergenic -25836 NR_029667 406906 NR_029667 ENSG00000284440 MIR122 MIR122A|MIRN122|MIRN122A|hsa-mir-122|miRNA122|miRNA122A|mir-122 microRNA 122 ncRNA 164-52 chr5 10308322 10308771 + 0.5 NA promoter-TSS (NM_138809) promoter-TSS (NM_138809) -644 NM_138809 134147 Hs.192586 NM_138809 ENSG00000164237 CMBL JS-1 carboxymethylenebutenolidase homolog protein-coding 117.833-10 chr11 8502232 8502528 + 0.5 NA intron (NM_001352388, intron 1 of 14) L1PA15|LINE|L1 91596 NM_001352397 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 174.833-12 chr14 75655489 75656012 + 0.5 NA intron (NM_007176, intron 2 of 4) MER5B|DNA|hAT-Charlie 5126 NM_007176 11161 Hs.15106 NM_007176 ENSG00000133935 ERG28 C14orf1|NET51 ergosterol biosynthesis 28 homolog protein-coding 119.333-79 chr5 19421742 19422137 + 0.5 NA Intergenic LTR38B|LTR|ERV1 464333 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 115.167-19 chr10 78644282 78644580 + 0.5 NA Intergenic Intergenic 377089 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 157.833-58 chr6 61959155 61959579 + 0.5 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 326858 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 121.667-77 chr4 161231401 161231743 + 0.5 NA Intergenic L1MC3|LINE|L1 -791161 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 170.333-49 chr3 100519941 100520670 + 0.5 NA intron (NM_001363876, intron 2 of 6) intron (NM_001363876, intron 2 of 6) 27686 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 125-91 chr8 15776576 15776869 + 0.5 NA Intergenic Intergenic 236459 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 179-6 chr12 9692788 9693517 + 0.5 NA intron (NM_001004419, intron 5 of 5) MIRc|SINE|MIR 23439 NM_001197319 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 118.5-70 chr4 23869453 23870016 + 0.5 NA intron (NM_001330752, intron 3 of 13) intron (NM_001330752, intron 3 of 13) 11558 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 126.5-90 chr9 98765929 98766359 + 0.5 NA intron (NM_173551, intron 11 of 14) intron (NM_173551, intron 11 of 14) 30411 NM_173551 203286 Hs.406890 NM_173551 ENSG00000165138 ANKS6 ANKRD14|NPHP16|PKDR1|SAMD6 ankyrin repeat and sterile alpha motif domain containing 6 protein-coding 215-22 chr3 29941364 29942035 + 0.5 NA intron (NM_001177711, intron 11 of 13) intron (NM_001177711, intron 11 of 13) -7543 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 153.833-27 chr16 56331902 56332350 + 0.5 NA intron (NM_138736, intron 4 of 7) L2a|LINE|L2 86606 NR_037499 100500891 NR_037499 ENSG00000265281 MIR3935 - microRNA 3935 ncRNA 142.5-46 chr22 33374122 33374715 + 0.5 NA intron (NM_133642, intron 9 of 14) MER101-int|LTR|ERV1 62251 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 186.5-28 chr15 62130825 62131231 + 0.5 NA Intergenic L1MCa|LINE|L1 34257 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 125-81 chr7 1557738 1558176 + 0.5 NA Intergenic Intergenic -1752 NM_001097620 202915 Hs.592174 NM_152689 ENSG00000164855 TMEM184A SDMG1 transmembrane protein 184A protein-coding 144.167-42 chr2 192205284 192205721 + 0.5 NA Intergenic MIRc|SINE|MIR -10569 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 236.5-17 chr2 179599876 179600760 + 0.5 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) -14412 NR_104234 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 212-21 chr20 46353653 46354123 + 0.5 NA intron (NM_173073, intron 7 of 9) intron (NM_173073, intron 7 of 9) 10537 NM_173073 51006 Hs.593344 NM_015945 ENSG00000080189 SLC35C2 BA394O2.1|C20orf5|CGI-15|OVCOV1 solute carrier family 35 member C2 protein-coding 120.667-62 chr2 137324422 137324724 + 0.5 NA intron (NM_001316349, intron 12 of 27) intron (NM_001316349, intron 12 of 27) 559028 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 161.333-43 chr2 172177634 172178196 + 0.5 NA Intergenic Intergenic 74909 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 129.667-72 chr3 189472521 189472863 + 0.5 NA Intergenic Intergenic -124054 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 233.333-7 chr14 53747067 53747657 + 0.5 NA Intergenic Intergenic 201122 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 125.333-53 chr15 84648264 84648839 + 0.5 NA non-coding (NR_130944, exon 3 of 7) non-coding (NR_130944, exon 3 of 7) 5695 NR_130944 84942 Hs.745027 NM_032856 ENSG00000177082 WDR73 GAMOS|GAMOS1|HSPC264 WD repeat domain 73 protein-coding 167.333-44 chr3 79859160 79859899 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -91531 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 157.5-70 chr9 4025751 4026188 + 0.5 NA intron (NM_001042413, intron 4 of 10) intron (NM_001042413, intron 4 of 10) 126214 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 160.333-61 chr8 19476197 19476693 + 0.5 NA intron (NM_001130518, intron 4 of 9) AluSq2|SINE|Alu 126100 NM_001354494 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 127.667-56 chr3 51039577 51040072 + 0.5 NA intron (NM_004947, intron 5 of 52) intron (NM_004947, intron 5 of 52) -345467 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 156.333-25 chr12 98653745 98654121 + 0.5 NA intron (NM_001160, intron 4 of 25) intron (NM_001160, intron 4 of 25) 8633 NM_181868 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 155-38 chr2 120815239 120815696 + 0.5 NA intron (NM_005270, intron 2 of 13) intron (NM_005270, intron 2 of 13) 23186 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 115.333-60 chr20 10981630 10981950 + 0.5 NA Intergenic Intergenic -44754 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 118.833-50 chr22 26818057 26818473 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -41946 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 133.5-86 chr9 85692006 85692365 + 0.5 NA intron (NM_015239, intron 3 of 25) intron (NM_015239, intron 3 of 25) 49844 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 193.5-54 chr8 131523087 131523858 + 0.5 NA Intergenic L1MA8|LINE|L1 -380621 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 115.333-29 chr14 49030051 49030460 + 0.5 NA Intergenic L1ME2|LINE|L1 556125 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 124.333-7 chr10 5229194 5229743 + 0.5 NA Intergenic Intergenic 32631 NM_001818 1109 Hs.567245 NM_001818 ENSG00000198610 AKR1C4 3-alpha-HSD|C11|CDR|CHDR|DD-4|DD4|HAKRA aldo-keto reductase family 1 member C4 protein-coding 130-58 chr2 191577536 191577821 + 0.5 NA Intergenic LTR82B|LTR|ERVL -100394 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 242.5-4 chr12 75016590 75017518 + 0.5 NA Intergenic MER61-int|LTR|ERV1 192694 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 173.833-47 chr5 84301263 84301787 + 0.5 NA intron (NM_001278642, intron 1 of 9) intron (NM_001278642, intron 1 of 9) 83342 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 200.167-44 chr8 127494186 127494796 + 0.5 NA Intergenic Intergenic -12352 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 130-75 chr4 46879179 46879501 + 0.5 NA intron (NM_130902, intron 1 of 2) AluJb|SINE|Alu 29905 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 163.667-56 chr4 67030091 67030511 + 0.5 NA Intergenic Intergenic 391699 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 158.333-10 chr10 74633035 74633479 + 0.5 NA intron (NM_001369124, intron 8 of 9) L1ME4b|LINE|L1 -103933 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 148.5-2 chr1 114174570 114174978 + 0.5 NA Intergenic Intergenic -20905 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 140.667-77 chr7 42214950 42215299 + 0.5 NA intron (NM_000168, intron 2 of 14) intron (NM_000168, intron 2 of 14) 22085 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 122.833-54 chr22 22815845 22816214 + 0.5 NA Intergenic Intergenic -6747 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 145.833-23 chr15 23649446 23649957 + 0.5 NA Intergenic Tigger7|DNA|TcMar-Tigger -1834 NM_019066 54551 Hs.141496 NM_019066 ENSG00000254585 MAGEL2 NDNL1|PWLS|SHFYNG|nM15 MAGE family member L2 protein-coding 161.5-21 chr19 46712376 46712998 + 0.5 NA intron (NM_016457, intron 2 of 17) intron (NM_016457, intron 2 of 17) 1633 NM_001079882 25865 Hs.466987 NM_016457 ENSG00000105287 PRKD2 HSPC187|PKD2|nPKC-D2 protein kinase D2 protein-coding 165.167-30 chr22 48271291 48271780 + 0.5 NA Intergenic MER117|DNA|hAT-Charlie -2829 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 179.667-50 chr7 26036645 26037206 + 0.5 NA Intergenic AluY|SINE|Alu -86939 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 165.167-23 chr2 108983096 108983795 + 0.5 NA intron (NM_022336, intron 1 of 11) intron (NM_022336, intron 1 of 11) 5775 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 120.5-63 chr3 147033897 147034266 + 0.5 NA Intergenic L1MCa|LINE|L1 112158 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 208.834 chr1 224185518 224186384 + 0.5 NA intron (NM_001321542, intron 1 of 2) AluJr4|SINE|Alu 2271 NM_001321542 8560 Hs.299878 NM_003676 ENSG00000143753 DEGS1 DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD delta 4-desaturase, sphingolipid 1 protein-coding 146.167-62 chr6 45148431 45148932 + 0.5 NA intron (NM_001350325, intron 2 of 10) Tigger9b|DNA|TcMar-Tigger 49089 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 206.5-20 chr4 33934031 33934668 + 0.5 NA intron (NR_125902, intron 4 of 4) LTR37B|LTR|ERV1 105544 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 179-46 chr5 123663235 123663661 + 0.5 NA Intergenic Intergenic 118031 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 129.333-9 chr10 57867893 57868410 + 0.5 NA Intergenic Intergenic 399743 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 184.167-49 chr9 37757479 37758003 + 0.5 NA intron (NR_104612, intron 1 of 8) intron (NR_104612, intron 1 of 8) 3936 NM_144964 158234 Hs.655614 NM_144964 ENSG00000165275 TRMT10B RG9MTD3|bA3J10.9 tRNA methyltransferase 10B protein-coding 130.167-56 chr5 46274828 46275183 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -578625 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 127.667-62 chr3 166757226 166757670 + 0.5 NA Intergenic L1MB7|LINE|L1 -141235 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 146.667-32 chr14 64874260 64874799 + 0.5 NA intron (NM_001355436, intron 1 of 35) intron (NM_001355436, intron 1 of 35) 5378 NM_001355437 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 158.333-60 chr5 97643527 97643884 + 0.5 NA intron (NR_105028, intron 2 of 3) L1PA16|LINE|L1 139009 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 143.167-36 chr2 73821885 73822194 + 0.5 NA Intergenic L2a|LINE|L2 -6872 NM_201647 10617 Hs.469018 NM_006463 ENSG00000124356 STAMBP AMSH|MICCAP STAM binding protein protein-coding 237.333-15 chr2 39799014 39799646 + 0.5 NA Intergenic MER1B|DNA|hAT-Charlie -20054 NM_001321475 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 192.333-52 chr8 109823171 109823852 + 0.5 NA Intergenic L1MA2|LINE|L1 -131720 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 126.5-44 chr2 117114989 117115473 + 0.5 NA Intergenic Intergenic -699460 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 136.167-26 chr16 62312845 62313303 + 0.5 NA Intergenic Intergenic -276636 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 144.667-22 chr11 66195690 66196305 + 0.5 NA intron (NM_018026, intron 2 of 23) Charlie1a|DNA|hAT-Charlie -61297 NM_001134775 64837 Hs.280792 NM_022822 ENSG00000174996 KLC2 - kinesin light chain 2 protein-coding 118-96 chr5 132053921 132054221 + 0.5 NA Intergenic Intergenic -6584 NM_000588 3562 Hs.694 NM_000588 ENSG00000164399 IL3 IL-3|MCGF|MULTI-CSF interleukin 3 protein-coding 214.5-10 chr15 76934733 76935393 + 0.5 NA intron (NM_001271837, intron 2 of 7) AluSx3|SINE|Alu 3314 NM_002902 5955 Hs.79088 NM_002902 ENSG00000117906 RCN2 E6BP|ERC-55|ERC55|TCBP49 reticulocalbin 2 protein-coding 134.833-12 chr12 13884807 13885161 + 0.5 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 95372 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 170-57 chr5 74961728 74962220 + 0.5 NA Intergenic L1MA3|LINE|L1 90584 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 144.833-76 chr9 90806128 90806591 + 0.5 NA intron (NM_001174168, intron 1 of 12) intron (NM_001174168, intron 1 of 12) 4540 NM_001135052 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 147.667-25 chr16 35356599 35356958 + 0.5 NA Intergenic L1M4c|LINE|L1 -6638 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 120-21 chr12 1024152 1024583 + 0.5 NA intron (NR_027948, intron 1 of 19) AluJb|SINE|Alu -3381 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 159-48 chr21 35260583 35261124 + 0.5 NA Intergenic L1MEf|LINE|L1 -211555 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 156-52 chr3 72826925 72827244 + 0.5 NA intron (NM_018130, intron 5 of 10) L2b|LINE|L2 21361 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 133-35 chr17 28993036 28993477 + 0.5 NA intron (NM_001290202, intron 1 of 16) intron (NM_001290202, intron 1 of 16) 12777 NM_178860 124925 Hs.21837 NM_178860 ENSG00000063015 SEZ6 BSRPC seizure related 6 homolog protein-coding 148.333-25 chr12 59239089 59239596 + 0.5 NA Intergenic Intergenic -318804 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 116.333-45 chr18 37550981 37551404 + 0.5 NA intron (NM_001353701, intron 1 of 1) intron (NM_001353701, intron 1 of 1) 14606 NM_001353718 56853 Hs.435976 NM_020180 ENSG00000101489 CELF4 BRUNOL4|CELF-4 CUGBP Elav-like family member 4 protein-coding 137.667-26 chr14 48274327 48274737 + 0.5 NA Intergenic L1M4b|LINE|L1 -479518 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 164.5-57 chr7 113025239 113025688 + 0.5 NA Intergenic L1MA1|LINE|L1 -29820 NR_110162 101928036 Hs.120006 NR_110162 ENSG00000234520 HRAT17 - heart tissue-associated transcript 17 ncRNA 188.333-39 chr3 163448859 163449383 + 0.5 NA Intergenic L1PA15|LINE|L1 -145820 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 161-17 chr14 63736647 63737238 + 0.5 NA Intergenic MIR3|SINE|MIR -8877 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 165.833-22 chr15 71699836 71700283 + 0.5 NA intron (NM_001286429, intron 2 of 11) L1ME3G|LINE|L1 -8520 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 115.833-48 chr3 122557525 122558015 + 0.5 NA intron (NM_001146105, intron 3 of 10) ERV3-16A3_LTR|LTR|ERVL 6530 NM_001146105 83666 Hs.518200 NM_031458 ENSG00000138496 PARP9 ARTD9|BAL|BAL1|MGC:7868 poly(ADP-ribose) polymerase family member 9 protein-coding 146.333-14 chr10 130909279 130909759 + 0.5 NA Intergenic L1MB8|LINE|L1 53149 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 152-55 chr9 613101 613488 + 0.5 NA intron (NM_001256877, intron 2 of 12) intron (NM_001256877, intron 2 of 12) -73473 NM_001354335 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 114.167-65 chr3 59426019 59426288 + 0.5 NA Intergenic Intergenic 232344 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 142.167-9 chr10 30280836 30281259 + 0.5 NA Intergenic MER4D|LTR|ERV1 68291 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 136.333-96 chr8 79438348 79438702 + 0.5 NA Intergenic Intergenic 106337 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 119.167-15 chr12 52716735 52717151 + 0.5 NA Intergenic MIRb|SINE|MIR -13419 NM_175078 374454 Hs.334989 NM_175078 ENSG00000189182 KRT77 K1B|KRT1B keratin 77 protein-coding 117.833-56 chr4 53985255 53985708 + 0.5 NA TTS (NR_027153) TTS (NR_027153) 1801 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 115.667-46 chr2 28899335 28899651 + 0.5 NA intron (NM_015131, intron 1 of 17) L2b|LINE|L2 4826 NM_015131 23160 Hs.622982 NM_015131 ENSG00000163811 WDR43 NET12|UTP5 WD repeat domain 43 protein-coding 133.667-33 chr14 86795317 86795792 + 0.5 NA Intergenic Intergenic -110224 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 127.167-9 chr1 225074587 225074961 + 0.5 NA intron (NM_001367479, intron 17 of 85) L1PA12|LINE|L1 145099 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 156.5-24 chr12 26467226 26467700 + 0.5 NA intron (NM_002223, intron 45 of 56) intron (NM_002223, intron 45 of 56) 271890 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 169-7 chr10 104557903 104558321 + 0.5 NA Intergenic Intergenic -77837 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 217.5-38 chr5 27102993 27103846 + 0.5 NA Intergenic Intergenic -64833 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 147.5-89 chr9 86237150 86237590 + 0.5 NA intron (NM_001276367, intron 1 of 4) L1MCa|LINE|L1 18663 NM_001276368 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 250.667-3 chr18 7587426 7588018 + 0.5 NA intron (NM_002845, intron 1 of 30) Charlie2a|DNA|hAT-Charlie 20406 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 117.667-9 chr10 15466532 15466819 + 0.5 NA Intergenic Intergenic -95386 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 153.667-86 chr9 132092551 132093022 + 0.5 NA Intergenic Intergenic -12919 NM_001253881 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 199.5-28 chr4 69579054 69579570 + 0.5 NA Intergenic L4_B_Mam|LINE|RTE-X -53298 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 162-42 chr21 26496501 26496941 + 0.5 NA intron (NM_052954, intron 2 of 3) intron (NM_052954, intron 2 of 3) 76565 NM_001320768 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 136.5-4 chr1 71460361 71460882 + 0.5 NA intron (NM_173808, intron 6 of 6) MIRb|SINE|MIR 376391 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 127-20 chr12 12950108 12950392 + 0.5 NA exon (NM_018654, exon 1 of 3) exon (NM_018654, exon 1 of 3) 134 NM_018654 55507 Hs.644599 NM_018654 ENSG00000111291 GPRC5D - G protein-coupled receptor class C group 5 member D protein-coding 145.167-36 chr2 231116078 231116634 + 0.5 NA intron (NM_000867, intron 2 of 3) intron (NM_000867, intron 2 of 3) 8686 NM_001320758 3357 Hs.421649 NM_000867 ENSG00000135914 HTR2B 5-HT(2B)|5-HT-2B|5-HT2B 5-hydroxytryptamine receptor 2B protein-coding 139.833-53 chr22 30453053 30453435 + 0.5 NA Intergenic Intergenic 18803 NM_001257378 266629 Hs.505601 NM_174975 ENSG00000100012 SEC14L3 TAP2 SEC14 like lipid binding 3 protein-coding 118.667-120 chr9 32699137 32699713 + 0.5 NA Intergenic LTR78|LTR|ERV1 -63756 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 121.833-72 chr7 104272417 104272712 + 0.5 NA Intergenic Intergenic -56092 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 205.833-26 chr5 137278941 137279478 + 0.5 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 151012 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 130.667-33 chr17 30000928 30001371 + 0.5 NA intron (NR_026738, intron 7 of 15) MER74B|LTR|ERVL 59515 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 133.333-111 chr7 35993397 35993824 + 0.5 NA Intergenic AluSz|SINE|Alu -101700 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 161.333-68 chr7 9531735 9532139 + 0.5 NA Intergenic AluJo|SINE|Alu -102333 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 129.833-59 chr6 35678038 35678437 + 0.5 NA intron (NM_001145775, intron 2 of 11) intron (NM_001145775, intron 2 of 11) 10678 NM_001145776 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 176.167-13 chr15 86849589 86850177 + 0.5 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -82997 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 170.5-22 chr16 78152523 78153239 + 0.5 NA intron (NM_001291997, intron 3 of 7) intron (NM_001291997, intron 3 of 7) 53227 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 155.5-53 chr7 27480907 27481285 + 0.5 NA Intergenic MER47B|DNA|TcMar-Tigger -134878 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 114.667-41 chr18 8696625 8696880 + 0.5 NA intron (NR_120598, intron 1 of 1) intron (NR_120598, intron 1 of 1) 10869 NR_120598 100287082 Hs.439434 NR_120598 ENSG00000265962 GACAT2 MTCL1-AS1|MTCL1AS1 gastric cancer associated transcript 2 ncRNA 154.333-19 chr12 116520799 116521244 + 0.5 NA Intergenic Intergenic -12401 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 124.167-51 chr2 220195815 220196150 + 0.5 NA Intergenic Intergenic -289417 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 125-68 chr5 160827206 160827700 + 0.5 NA intron (NM_001366652, intron 1 of 24) L1PA16|LINE|L1 24758 NM_001366652 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 132.833-18 chr12 57233936 57234442 + 0.5 NA TTS (NM_020142) TTS (NM_020142) 3823 NR_048562 6472 Hs.741179 NM_005412 ENSG00000182199 SHMT2 GLYA|HEL-S-51e|SHMT serine hydroxymethyltransferase 2 protein-coding 148.333-2 chr1 48882530 48882985 + 0.5 NA intron (NM_001323575, intron 5 of 12) L1MA7|LINE|L1 -105788 NM_001349795 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 270.5-13 chr8 91485699 91486546 + 0.5 NA Intergenic L1MEf|LINE|L1 236803 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 156.833-52 chr6 143467652 143468071 + 0.5 NA intron (NM_003630, intron 3 of 11) L1MC5|LINE|L1 17056 NM_003630 8504 Hs.7277 NM_003630 ENSG00000034693 PEX3 PBD10A|PBD10B|TRG18 peroxisomal biogenesis factor 3 protein-coding 149.167-5 chr10 30277885 30278247 + 0.5 NA Intergenic L1PA8|LINE|L1 66214 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 159.833-37 chr4 107588235 107588635 + 0.5 NA Intergenic MER61-int|LTR|ERV1 131799 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 129.667-27 chr13 52159506 52159957 + 0.5 NA promoter-TSS (NM_152720) promoter-TSS (NM_152720) 130 NR_027415 4752 Hs.409989 NM_002498 ENSG00000136098 NEK3 HSPK36 NIMA related kinase 3 protein-coding 156.667-24 chr11 115454183 115454871 + 0.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 49888 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 157.833-2 chr1 93454109 93454494 + 0.5 NA intron (NM_001024948, intron 1 of 13) intron (NM_001024948, intron 1 of 13) 6170 NM_001164473 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 161.167-50 chr6 125204794 125205136 + 0.5 NA intron (NM_001318907, intron 1 of 4) L2c|LINE|L2 1254 NM_001318907 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 118.333-10 chr10 64818603 64818919 + 0.5 NA Intergenic Intergenic -6767 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 201.5-18 chr2 97689043 97689818 + 0.5 NA intron (NR_038386, intron 6 of 9) intron (NR_038386, intron 6 of 9) 19687 NR_038386 728537 Hs.469369 NM_001351368 ENSG00000228486 C2orf92 LINC01125 chromosome 2 open reading frame 92 protein-coding 113.833-66 chr4 165120956 165121247 + 0.5 NA Intergenic AluSz6|SINE|Alu -8241 NM_001100389 201931 Hs.704511 NM_152681 ENSG00000170088 TMEM192 - transmembrane protein 192 protein-coding 139.333-27 chr12 80106416 80106890 + 0.5 NA intron (NM_001368062, intron 1 of 62) intron (NM_001368062, intron 1 of 62) 7116 NM_001368062 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 117.833-4 chr10 57610680 57611284 + 0.5 NA Intergenic L1MC4|LINE|L1 -306423 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 202.167-26 chr4 75869547 75870094 + 0.5 NA intron (NM_006239, intron 13 of 16) AluJb|SINE|Alu 32632 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 167.833-13 chr13 111210168 111210609 + 0.5 NA intron (NM_001330597, intron 4 of 18) intron (NM_001330597, intron 4 of 18) 7328 NM_001320853 8874 Hs.508738 NM_003899 ENSG00000102606 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor 7 protein-coding 137.833-22 chr2 170308238 170308578 + 0.5 NA intron (NM_001083615, intron 7 of 33) intron (NM_001083615, intron 7 of 33) 42535 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 170.5-51 chr4 51913090 51913505 + 0.5 NA exon (NM_001287757, exon 11 of 12) exon (NM_001287757, exon 11 of 12) 69718 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 125-66 chr5 79375018 79375283 + 0.5 NA 3' UTR (NM_001277077, exon 6 of 6) 3' UTR (NM_001277077, exon 6 of 6) 138686 NM_001277078 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 116.167-65 chr5 165621081 165621473 + 0.5 NA Intergenic L2c|LINE|L2 1150998 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 181.667-57 chr6 118654159 118654616 + 0.5 NA intron (NM_001178035, intron 1 of 13) intron (NM_001178035, intron 1 of 13) -2796 NM_206921 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 120.5-38 chr15 92098180 92098698 + 0.5 NA intron (NR_135775, intron 3 of 10) intron (NR_135775, intron 3 of 10) 244135 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 114-95 chr7 101200996 101201375 + 0.5 NA promoter-TSS (NM_001287147) promoter-TSS (NM_001287147) -149 NM_178176 346606 Hs.512217 NM_178176 ENSG00000106384 MOGAT3 DC7|DGAT2L2|MGAT3 monoacylglycerol O-acyltransferase 3 protein-coding 138.167-62 chr5 89876047 89876497 + 0.5 NA Intergenic Intergenic 140448 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 162.5-63 chr6 45891541 45891935 + 0.5 NA Intergenic L1ME4b|LINE|L1 45859 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 155.333-73 chr4 85099859 85100392 + 0.5 NA Intergenic MIR|SINE|MIR 132641 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 180.167-4 chr1 213857073 213857540 + 0.5 NA intron (NR_037850, intron 4 of 5) intron (NR_037850, intron 4 of 5) -67443 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 124.667-101 chr5 124651673 124651938 + 0.5 NA intron (NM_020747, intron 2 of 8) CpG 93307 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 113.167-19 chr14 75420856 75421250 + 0.5 NA Intergenic Intergenic -6671 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 123.5-4 chr1 89276518 89276846 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -3822 NM_001134486 115362 Hs.513726 NM_052942 ENSG00000154451 GBP5 GBP-5 guanylate binding protein 5 protein-coding 164-49 chr4 182329426 182329905 + 0.5 NA intron (NM_001080477, intron 2 of 27) intron (NM_001080477, intron 2 of 27) 86263 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 125.167-48 chr20 36663922 36664356 + 0.5 NA intron (NM_032013, intron 12 of 15) L1M5|LINE|L1 -17943 NM_032214 84174 Hs.713578 NM_032214 ENSG00000101082 SLA2 C20orf156|MARS|SLAP-2|SLAP2 Src like adaptor 2 protein-coding 157.5-2 chr1 152050561 152051003 + 0.5 NA Intergenic Intergenic -13778 NM_005620 6282 Hs.417004 NM_005620 ENSG00000163191 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 137.333-23 chr13 111888009 111888339 + 0.5 NA Intergenic L1M4a2|LINE|L1 -5204 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 130.333-80 chr6 62999738 63000217 + 0.5 NA Intergenic Intergenic 320000 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 133.333-16 chr10 107087767 107088327 + 0.5 NA intron (NM_001206569, intron 1 of 25) AluY|SINE|Alu 76659 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 165.5-49 chr6 14515703 14516210 + 0.5 NA Intergenic Intergenic -230502 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 139-25 chr2 15526152 15526485 + 0.5 NA intron (NR_052013, intron 9 of 50) intron (NR_052013, intron 9 of 50) 35016 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 188.667-55 chr6 56473889 56474528 + 0.5 NA intron (NM_001144770, intron 84 of 94) AluSx|SINE|Alu -80080 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 211.5-35 chr8 123475474 123476117 + 0.5 NA Intergenic Intergenic 56348 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 155.333-13 chr10 54029241 54029621 + 0.5 NA intron (NM_001354411, intron 19 of 34) intron (NM_001354411, intron 19 of 34) -456799 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 168.5 chr1 18822856 18823313 + 0.5 NA Intergenic Intergenic 36577 NM_152232 80834 Hs.553548 NM_152232 ENSG00000179002 TAS1R2 GPR71|T1R2|TR2 taste 1 receptor member 2 protein-coding 204.167-9 chr12 16257918 16258825 + 0.5 NA intron (NM_001170798, intron 2 of 8) intron (NM_001170798, intron 2 of 8) 19314 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 219.667-2 chr1 233262313 233262900 + 0.5 NA intron (NM_014801, intron 2 of 33) intron (NM_014801, intron 2 of 33) 33119 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 125.5-28 chr17 29759708 29760228 + 0.5 NA intron (NM_033389, intron 2 of 14) intron (NM_033389, intron 2 of 14) 1464 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 133.833-81 chr9 91409577 91409968 + 0.5 NA exon (NM_001290000, exon 2 of 2) exon (NM_001290000, exon 2 of 2) 14060 NM_005384 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 180-45 chr5 169464868 169465327 + 0.5 NA Intergenic AluSz|SINE|Alu -118676 NM_001329639 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 116.167-34 chr2 54332941 54333268 + 0.5 NA intron (NM_001369403, intron 1 of 3) intron (NM_001369403, intron 1 of 3) 2220 NM_001369401 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 145-54 chr22 27541395 27541861 + 0.5 NA Intergenic MIRb|SINE|MIR 230977 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 180.833-30 chr3 111602397 111602900 + 0.5 NA intron (NM_001318889, intron 7 of 7) intron (NM_001318889, intron 7 of 7) -7302 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 163.333-7 chr1 248249873 248250612 + 0.5 NA Intergenic Intergenic 11313 NM_017504 26245 Hs.381309 NM_017504 ENSG00000171180 OR2M4 HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100 olfactory receptor family 2 subfamily M member 4 protein-coding 114-21 chr10 121928720 121929043 + 0.5 NA promoter-TSS (NM_001288736) promoter-TSS (NM_001288736) -80 NM_001288736 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 139.333-13 chr10 90573313 90573882 + 0.5 NA Intergenic L1MA5|LINE|L1 -32792 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 140.5-50 chr4 48854416 48854851 + 0.5 NA intron (NR_146806, intron 1 of 1) intron (NR_146806, intron 1 of 1) 5570 NR_146806 100861517 Hs.661065 NR_146806 ENSG00000248256 OCIAD1-AS1 - OCIAD1 antisense RNA 1 ncRNA 137.333-27 chr14 72024282 72024700 + 0.5 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 90964 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 245.833-8 chr2 100070676 100071266 + 0.5 NA intron (NM_001025108, intron 2 of 23) intron (NM_001025108, intron 2 of 23) 34612 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 219.333-37 chr7 33650626 33651305 + 0.5 NA Intergenic Intergenic -253950 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 164.833-39 chr5 7178620 7179369 + 0.5 NA Intergenic Intergenic 90360 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 133.167-42 chr3 167339802 167340161 + 0.5 NA intron (NM_001199202, intron 9 of 20) Tigger9a|DNA|TcMar-Tigger 40302 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 114.167-103 chrX 50727576 50727951 + 0.5 NA intron (NR_027121, intron 1 of 9) THE1D|LTR|ERVL-MaLR 86281 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 174-53 chr6 130274591 130275080 + 0.5 NA intron (NM_001258275, intron 2 of 13) intron (NM_001258275, intron 2 of 13) -51884 NM_001017373 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 124.5-38 chr20 41121311 41121675 + 0.5 NA intron (NM_003286, intron 18 of 20) intron (NM_003286, intron 18 of 20) -16050 NM_002660 5335 Hs.268177 NM_002660 ENSG00000124181 PLCG1 NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1 phospholipase C gamma 1 protein-coding 119-10 chr1 231440981 231441268 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity -16080 NM_022051 54583 Hs.444450 NM_022051 ENSG00000135766 EGLN1 C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia inducible factor 1 protein-coding 152.667-84 chr8 104612384 104612934 + 0.5 NA Intergenic L1PA15|LINE|L1 -23635 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 192.5-46 chr7 6560208 6560934 + 0.5 NA Intergenic AluSx1|SINE|Alu -9135 NM_001145118 392862 Hs.512174 NM_001145118 ENSG00000215045 GRID2IP DELPHILIN Grid2 interacting protein protein-coding 163-41 chr3 97469113 97469683 + 0.5 NA intron (NM_173655, intron 5 of 12) intron (NM_173655, intron 5 of 12) 29791 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 157.667-30 chr19 28697294 28697658 + 0.5 NA intron (NR_110759, intron 5 of 9) L1MD1|LINE|L1 30218 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 137.5-11 chr10 28702883 28703328 + 0.5 NA Intergenic Intergenic 25584 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 135.333-66 chr6 28156695 28157023 + 0.5 NA 3' UTR (NM_001278119, exon 7 of 7) 3' UTR (NM_001278119, exon 7 of 7) -4902 NR_103448 651302 Hs.172143 NM_001145129 ENSG00000226314 ZNF192P1 ZNF389|ZNF389P|dJ265C24.4 zinc finger protein 192 pseudogene 1 pseudo 117-16 chr10 84505612 84506070 + 0.5 NA intron (NM_001351290, intron 10 of 11) intron (NM_001351290, intron 10 of 11) 80672 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 118-19 chr10 98491261 98491634 + 0.5 NA intron (NM_021828, intron 9 of 11) intron (NM_021828, intron 9 of 11) -44484 NM_182639 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 140.5-7 chr1 217888677 217889243 + 0.5 NA Intergenic Intergenic -3940 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 185.667-6 chr10 100076304 100076937 + 0.5 NA intron (NM_001308, intron 1 of 8) intron (NM_001308, intron 1 of 8) 5249 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 114.167-44 chr2 66012046 66012611 + 0.5 NA Intergenic Intergenic 346000 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 135.333-41 chr2 77287136 77287665 + 0.5 NA intron (NR_146416, intron 1 of 1) (AT)n|Simple_repeat|Simple_repeat 234976 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 114.833-3 chr1 63066831 63067256 + 0.5 NA Intergenic AluSg|SINE|Alu -54572 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 147.333-6 chr1 209247230 209247524 + 0.5 NA Intergenic Intergenic -78079 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 199.667-13 chr12 3627192 3628008 + 0.5 NA intron (NM_001144958, intron 16 of 19) intron (NM_001144958, intron 16 of 19) 125509 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 167.333-63 chr7 29177437 29178019 + 0.5 NA intron (NM_001371256, intron 3 of 16) intron (NM_001371256, intron 3 of 16) 12329 NM_001371262 171.333-31 chr2 51427598 51428216 + 0.5 NA intron (NR_135237, intron 4 of 10) Arthur1|DNA|hAT-Tip100 395306 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 181.167-12 chr2 63671856 63672270 + 0.5 NA Intergenic L4_B_Mam|LINE|RTE-X 82912 NM_001199111 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 179-5 chr12 2293566 2294141 + 0.5 NA intron (NM_199460, intron 3 of 49).2 L2a|LINE|L2 24077 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 140.833-55 chr6 159586113 159586535 + 0.5 NA Intergenic L1MC1|LINE|L1 106917 NM_001024465 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 147.5-74 chr6 37424672 37425202 + 0.5 NA Intergenic L1M4c|LINE|L1 -8284 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 177.833-26 chr3 77256440 77256975 + 0.5 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 158695 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 167.167-17 chr11 12797902 12798399 + 0.5 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 123729 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 131.5-48 chr3 54863064 54863441 + 0.5 NA intron (NM_018398, intron 17 of 37) intron (NM_018398, intron 17 of 37) 38003 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 134-52 chr17 82512783 82513146 + 0.5 NA Intergenic AluSq2|SINE|Alu -6768 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1|nGTBP forkhead box K2 protein-coding 200.167-27 chr2 79847859 79848395 + 0.5 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 18456 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 131.333-13 chr10 124202383 124202772 + 0.5 NA Intergenic Intergenic -108979 NM_001270764 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 137-95 chr8 115235894 115236411 + 0.5 NA Intergenic Intergenic 431861 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 117.667-130 chr9 28618657 28619176 + 0.5 NA intron (NM_152570, intron 2 of 6) MIRb|SINE|MIR 100389 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 201-33 chr5 26506890 26507512 + 0.5 NA Intergenic AluSz|SINE|Alu 531385 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 147.667-46 chr3 124677032 124677353 + 0.5 NA intron (NM_007064, intron 16 of 26) intron (NM_007064, intron 16 of 26) -53174 NR_033434 7372 Hs.2057 NM_000373 ENSG00000114491 UMPS OPRT uridine monophosphate synthetase protein-coding 149.5-43 chr3 23321893 23322400 + 0.5 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 118819 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 114.5-97 chr8 130816910 130817369 + 0.5 NA intron (NM_001115, intron 13 of 17) L1MC5|LINE|L1 223770 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 124-24 chr12 42280205 42280599 + 0.5 NA Intergenic Intergenic -42034 NR_135139 10138 Hs.649195 NM_005748 ENSG00000015153 YAF2 - YY1 associated factor 2 protein-coding 155.167-44 chr7 51774708 51775133 + 0.5 NA Intergenic MIR|SINE|MIR -381664 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 180.167-16 chr14 49845919 49846338 + 0.5 NA intron (NM_001301732, intron 4 of 31) intron (NM_001301732, intron 4 of 31) 6660 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 122.667-60 chr3 2004800 2005231 + 0.5 NA Intergenic L2c|LINE|L2 -93788 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 141.167-32 chr17 79950564 79950891 + 0.5 NA intron (NM_019020, intron 5 of 11) intron (NM_019020, intron 5 of 11) 126 NM_001271846 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 125.333-94 chr5 95956167 95956524 + 0.5 NA intron (NM_012081, intron 1 of 11) intron (NM_012081, intron 1 of 11) 5506 NM_012081 22936 Hs.192221 NM_012081 ENSG00000118985 ELL2 MRCCAT1 elongation factor for RNA polymerase II 2 protein-coding 142.667-93 chr7 55487745 55488189 + 0.5 NA intron (NM_001321243, intron 4 of 5) intron (NM_001321243, intron 4 of 5) 38913 NM_001321251 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 185.5-40 chr5 157610442 157610834 + 0.5 NA Intergenic AluSx1|SINE|Alu -34863 NM_033274 8728 Hs.483944 NM_023038 ENSG00000135074 ADAM19 FKSG34|MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 123.833-14 chr12 18733303 18733802 + 0.5 NA intron (NM_001330774, intron 3 of 14) L1MA10|LINE|L1 3957 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 229.667-29 chr5 171241500 171242473 + 0.5 NA intron (NM_022897, intron 23 of 27) intron (NM_022897, intron 23 of 27) -67262 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 118.333-14 chr11 27604523 27604808 + 0.5 NA intron (NR_033314, intron 3 of 6) MLT1A0|LTR|ERVL-MaLR 29962 NR_102708 101410541 Hs.471439 NR_102708 ENSG00000254934 LINC00678 - long intergenic non-protein coding RNA 678 ncRNA 155.167-22 chr2 23205130 23205554 + 0.5 NA Intergenic Intergenic -179837 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 198.667-39 chr4 78941683 78942217 + 0.5 NA Intergenic Intergenic -2512 NR_146464 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 125.5-57 chr4 2118391 2118780 + 0.5 NA intron (NM_181808, intron 19 of 25) MLT1I-int|LTR|ERVL-MaLR 59258 NM_178557 339983 Hs.318529 NM_178557 ENSG00000185818 NAT8L CML3|NACED|NAT8-LIKE N-acetyltransferase 8 like protein-coding 203-43 chr7 30784812 30785550 + 0.5 NA intron (NR_037598, intron 5 of 19) intron (NR_037598, intron 5 of 19) 13764 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 160.167-4 chr10 31184889 31185412 + 0.5 NA Intergenic Charlie7|DNA|hAT-Charlie -2733 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 143.167-31 chr2 44899558 44900024 + 0.5 NA Intergenic Intergenic 39097 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 123.5-22 chr12 71004053 71004431 + 0.5 NA Intergenic Intergenic -83504 NM_002849 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 211-8 chr10 101437328 101437805 + 0.5 NA intron (NM_001256856, intron 2 of 13) intron (NM_001256856, intron 2 of 13) 83401 NM_033637 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 180.167-42 chr4 106786657 106787184 + 0.5 NA Intergenic L1M4|LINE|L1 249393 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 141.667-28 chr14 68191528 68192147 + 0.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 368245 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 148.333-37 chr16 84151735 84152131 + 0.5 NA intron (NM_178452, intron 3 of 11) intron (NM_178452, intron 3 of 11) 6625 NM_178452 123872 Hs.310164 NM_178452 ENSG00000154099 DNAAF1 CILD13|LRRC50|ODA7|swt dynein axonemal assembly factor 1 protein-coding 129.167-51 chr3 129027372 129027868 + 0.5 NA intron (NM_024768, intron 2 of 7) intron (NM_024768, intron 2 of 7) -23618 NM_001348521 57501 Hs.518247 NM_020741 ENSG00000114656 KIAA1257 - KIAA1257 protein-coding 131.5-62 chr5 16118245 16118802 + 0.5 NA intron (NM_001102562, intron 2 of 3) L2b|LINE|L2 61268 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 155.833-38 chr22_KI270736v1_random 171319 171651 + 0.5 NA NA Intergenic NA NA 125.833-73 chr5 115234444 115234936 + 0.5 NA intron (NM_005023, intron 5 of 8) L1MC4a|LINE|L1 28187 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 165.167-19 chr18 4997416 4997752 + 0.5 NA Intergenic AluY|SINE|Alu -83598 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 115.667-107 chr6 83768582 83769010 + 0.5 NA Intergenic L2c|LINE|L2 59354 NR_136251 105377879 Hs.736886 NR_136251 LOC105377879 - uncharacterized LOC105377879 ncRNA 162.833-46 chr7 55482891 55483396 + 0.5 NA intron (NM_001321243, intron 4 of 5) intron (NM_001321243, intron 4 of 5) 43737 NM_001321251 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 147.5-36 chr17 67777285 67777758 + 0.5 NA Intergenic FLAM_C|SINE|Alu 36851 NR_003706 100124536 Hs.693446 NR_003706 ENSG00000200394 SNORA38B - small nucleolar RNA, H/ACA box 38B snoRNA 133-43 chr2 39566896 39567289 + 0.5 NA intron (NR_037875, intron 5 of 5) MIR|SINE|MIR -98406 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 192.5-43 chr5 89279572 89280003 + 0.5 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -375682 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 164.167-63 chr8 115464994 115465569 + 0.5 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 202732 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 243.333-14 chr20 54063017 54063784 + 0.5 NA intron (NM_001366297, intron 1 of 8) intron (NM_001366297, intron 1 of 8) -4380 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 193.833-34 chr6 137785936 137786471 + 0.5 NA Intergenic L1MEc|LINE|L1 -47166 NR_121619 100507406 Hs.556703 NR_121618 ENSG00000234956 LINC02539 - long intergenic non-protein coding RNA 2539 ncRNA 162.833-11 chr11 92880066 92880479 + 0.5 NA intron (NM_001008781, intron 21 of 24) intron (NM_001008781, intron 21 of 24) 35356 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 152.833-5 chr1 166123054 166123512 + 0.5 NA intron (NR_163271, intron 1 of 2) intron (NR_163271, intron 1 of 2) 31515 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 148.833-52 chr5 109613527 109614053 + 0.5 NA Intergenic Intergenic -75576 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 160.333-25 chr2 31918758 31919237 + 0.5 NA intron (NR_126032, intron 4 of 6) intron (NR_126032, intron 4 of 6) 91667 NM_001137602 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 169-45 chr5 57402350 57403184 + 0.5 NA Intergenic Intergenic 80044 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 127.833-35 chr2 25802474 25802830 + 0.5 NA intron (NM_001369346, intron 2 of 10) MER21C|LTR|ERVL -7961 NM_001369347 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 116.5-89 chr8 10481516 10481906 + 0.5 NA intron (NR_120604, intron 4 of 4) intron (NR_120604, intron 4 of 4) 7146 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 131.667-17 chr10 116995264 116995620 + 0.5 NA intron (NM_001258300, intron 2 of 17) MER34B-int|LTR|ERV1 9745 NM_001127211 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 141.833-31 chr4 169017981 169018284 + 0.5 NA Intergenic Intergenic -7877 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 157.167-27 chr15 70153955 70154325 + 0.5 NA Intergenic Intergenic -56223 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 139.333-67 chr4 62033715 62034244 + 0.5 NA intron (NM_001371343, intron 21 of 23) intron (NM_001371343, intron 21 of 23) 127786 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 161.167-30 chr2 53699191 53699772 + 0.5 NA intron (NM_001201965, intron 7 of 8) intron (NM_001201965, intron 7 of 8) -68302 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 170-59 chr5 98932737 98933246 + 0.5 NA intron (NR_151718, intron 1 of 3) intron (NR_151718, intron 1 of 3) -3277 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 171.5-21 chr15 96424658 96425139 + 0.5 NA Intergenic L1MA2|LINE|L1 91133 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 137.5-28 chr14 44726927 44727245 + 0.5 NA Intergenic MSTB1|LTR|ERVL-MaLR 72040 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 170.833-51 chrX 5184714 5185175 + 0.5 NA Intergenic Intergenic -551372 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 134.667-101 chr7 82908868 82909356 + 0.5 NA intron (NM_033026, intron 7 of 24) intron (NM_033026, intron 7 of 24) 253772 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 185.333-8 chr11 30464822 30465468 + 0.5 NA intron (NM_001584, intron 3 of 5) intron (NM_001584, intron 3 of 5) 115348 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 204-16 chr2 28627521 28628326 + 0.5 NA intron (NR_138141, intron 29 of 35) intron (NR_138141, intron 29 of 35) 61566 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 182-17 chr15 74662084 74662603 + 0.5 NA intron (NM_001142443, intron 6 of 9) L2c|LINE|L2 33681 NM_001142443 80153 Hs.96852 NM_025083 ENSG00000179151 EDC3 LSM16|MRT50|YJDC|YJEFN2|hYjeF_N2-15q23 enhancer of mRNA decapping 3 protein-coding 119-104 chr9 128540874 128541213 + 0.5 NA intron (NM_001003722, intron 15 of 15) intron (NM_001003722, intron 15 of 15) -11544 NM_001130438 6709 Hs.372331 NM_003127 ENSG00000197694 SPTAN1 EIEE5|NEAS|SPTA2 spectrin alpha, non-erythrocytic 1 protein-coding 139.333-77 chr5 81668943 81669311 + 0.5 NA intron (NM_012446, intron 1 of 16) intron (NM_012446, intron 1 of 16) 82126 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 142.333-40 chr17 44881592 44881978 + 0.5 NA intron (NM_001142605, intron 5 of 26) intron (NM_001142605, intron 5 of 26) 17583 NM_001258353 9343 Hs.151787 NM_004247 ENSG00000108883 EFTUD2 MFDGA|MFDM|SNRNP116|Snrp116|Snu114|U5-116KD elongation factor Tu GTP binding domain containing 2 protein-coding 114.5-59 chr20 30978245 30978573 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -279255 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 150.833 chr10 103341961 103342351 + 0.5 NA intron (NM_032154, intron 3 of 6) AluSz|SINE|Alu 8984 NM_032154 84108 Hs.335808 NM_032154 ENSG00000156374 PCGF6 MBLR|RNF134 polycomb group ring finger 6 protein-coding 128.833 chr1 34974602 34975100 + 0.5 NA TTS (NR_037869) TTS (NR_037869) 3855 NR_037869 653160 Hs.533986 NR_037869 ENSG00000241014 LOC653160 - uncharacterized LOC653160 ncRNA 151.5-77 chr9 91993247 91993679 + 0.5 NA Intergenic AluSx1|SINE|Alu -43235 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 116.333-53 chr2 169076801 169077153 + 0.5 NA intron (NM_001142270, intron 2 of 5) Tigger2|DNA|TcMar-Tigger -4130 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 188.667-48 chr5 102541724 102542287 + 0.5 NA Intergenic MIRc|SINE|MIR -39363 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 125.5-20 chr14 38861408 38861824 + 0.5 NA intron (NR_039982, intron 2 of 4) L1PA8|LINE|L1 -20980 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 148-7 chr1 167193755 167194119 + 0.5 NA intron (NR_110811, intron 2 of 3) L1MEc|LINE|L1 1868 NR_110811 101928484 Hs.568496 NR_110811 LINC01363 RBSG4 long intergenic non-protein coding RNA 1363 ncRNA 124.5-74 chr8 68781160 68781659 + 0.5 NA intron (NR_146187, intron 11 of 13) intron (NR_146187, intron 11 of 13) 322781 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 145.667-83 chr5 36856923 36857284 + 0.5 NA Intergenic Intergenic 19591 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 189.667-21 chr14 89844534 89845021 + 0.5 NA intron (NM_001284269, intron 5 of 5) intron (NM_001284269, intron 5 of 5) 109759 NM_001284269 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 182.667-62 chr9 28557929 28558486 + 0.5 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 161098 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 159.333-70 chr7 113080599 113081224 + 0.5 NA 3' UTR (NM_018970, exon 3 of 3) 3' UTR (NM_018970, exon 3 of 3) 5427 NM_001146266 54329 Hs.152009 NM_018970 ENSG00000164604 GPR85 SREB|SREB2 G protein-coupled receptor 85 protein-coding 162.167-30 chr3 27010307 27010711 + 0.5 NA Intergenic Intergenic 206014 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 121.833-33 chr2 106043110 106043416 + 0.5 NA Intergenic Intergenic -22425 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 126.5-55 chr22 37164701 37165104 + 0.5 NA intron (NM_001346222, intron 1 of 9) intron (NM_001346222, intron 1 of 9) 10154 NM_001346223 3560 Hs.474787 NM_000878 ENSG00000100385 IL2RB CD122|IL15RB|P70-75 interleukin 2 receptor subunit beta protein-coding 118.5-17 chr11 28092139 28092599 + 0.5 NA intron (NM_031217, intron 3 of 16) intron (NM_031217, intron 3 of 16) 15787 NM_031217 81930 Hs.301052 NM_031217 ENSG00000121621 KIF18A MS-KIF18A|PPP1R99 kinesin family member 18A protein-coding 119.5-101 chr8 37757842 37758220 + 0.5 NA 3' UTR (NM_001362878, exon 12 of 12) 3' UTR (NM_001362878, exon 12 of 12) -4515 NM_001349349 11212 Hs.304792 NM_007198 ENSG00000147471 PLPBP EPVB6D|PROSC pyridoxal phosphate binding protein protein-coding 180-56 chr8 84636322 84636789 + 0.5 NA intron (NM_001354308, intron 3 of 9) CR1-3_Croc|LINE|CR1 -69372 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 166-75 chr9 12280549 12281208 + 0.5 NA Intergenic MER1B|DNA|hAT-Charlie -412507 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 120.333-52 chr2 2541193 2541466 + 0.5 NA Intergenic Intergenic -210054 NM_001303052 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 173.167-6 chr11 4373259 4373751 + 0.5 NA Intergenic Intergenic -5119 NM_001005161 143496 Hs.447463 NM_001005161 ENSG00000221996 OR52B4 OR11-3 olfactory receptor family 52 subfamily B member 4 (gene/pseudogene) protein-coding 212.667-44 chr7 51307242 51307956 + 0.5 NA intron (NM_015198, intron 1 of 12) intron (NM_015198, intron 1 of 12) 9210 NM_001287438 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 118.167-4 chr1 219549416 219549976 + 0.5 NA intron (NR_135822, intron 1 of 3) intron (NR_135822, intron 1 of 3) 7628 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 123.667-45 chr19 14308768 14309182 + 0.5 NA intron (NR_134908, intron 3 of 3) AluSz|SINE|Alu -24768 NR_134916 101928845 Hs.531617 NR_134916 ENSG00000267147 LINC01842 - long intergenic non-protein coding RNA 1842 ncRNA 155.5-5 chr10 73149565 73150037 + 0.5 NA intron (NM_001135753, intron 6 of 12) L1ME4b|LINE|L1 18207 NM_007265 11319 Hs.631822 NM_007265 ENSG00000122882 ECD GCR2|HSGT1|SGT1 ecdysoneless cell cycle regulator protein-coding 116-2 chr1 36296457 36296896 + 0.5 NA exon (NM_005119, exon 9 of 12) exon (NM_005119, exon 9 of 12) -9692 NM_001162530 79729 Hs.524496 NM_024676 ENSG00000214193 SH3D21 C1orf113 SH3 domain containing 21 protein-coding 238-20 chr3 194980898 194981604 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -113337 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 119.5-93 chr7 13904353 13904793 + 0.5 NA intron (NM_001370555, intron 11 of 12) intron (NM_001370555, intron 11 of 12) 81941 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 164.667-12 chr11 12038558 12039037 + 0.5 NA intron (NR_135109, intron 1 of 1) L1PA15|LINE|L1 7922 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 144.5-94 chr9 95922534 95922923 + 0.5 NA intron (NM_020207, intron 8 of 18) intron (NM_020207, intron 8 of 18) 46720 NM_001010895 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 151.167-8 chr10 116941769 116942167 + 0.5 NA intron (NM_001127211, intron 8 of 16) intron (NM_001127211, intron 8 of 16) 63219 NM_001127211 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 154.333-31 chr17 66150895 66151356 + 0.5 NA intron (NM_001353129, intron 4 of 26) L1MB2|LINE|L1 40767 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 235.667-2 chr10 69037920 69038846 + 0.5 NA Intergenic AluJo|SINE|Alu -49220 NM_001321053 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 196.833-25 chr8 134951842 134952462 + 0.5 NA Intergenic L1ME1|LINE|L1 102217 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 126.167-95 chr9 82255452 82255909 + 0.5 NA Intergenic Intergenic 266908 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 119.5-52 chr2 226985436 226985910 + 0.5 NA intron (NM_001349069, intron 8 of 8) intron (NM_001349069, intron 8 of 8) 149619 NM_001167608 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 123.5-37 chr18 10261403 10261731 + 0.5 NA Intergenic Intergenic 152803 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 121.167-34 chr18 2712836 2713178 + 0.5 NA intron (NM_015295, intron 17 of 47) intron (NM_015295, intron 17 of 47) 57120 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 128.167-59 chr4 56246494 56246914 + 0.5 NA intron (NM_020722, intron 2 of 10) intron (NM_020722, intron 2 of 10) 76509 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 214-5 chr10 106250638 106251118 + 0.5 NA Intergenic Intergenic 110713 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 123.833-45 chr5 36664689 36665197 + 0.5 NA intron (NM_004172, intron 3 of 9) intron (NM_004172, intron 3 of 9) 58337 NM_001166695 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 132.167-5 chr1 162133022 162133542 + 0.5 NA intron (NM_014697, intron 1 of 9) intron (NM_014697, intron 1 of 9) -23825 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 120.5-8 chr10 17245732 17246053 + 0.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -15907 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 235.333-29 chr9 101806390 101806931 + 0.5 NA Intergenic THE1A|LTR|ERVL-MaLR -68080 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 228.667-32 chr5 114677874 114678413 + 0.5 NA intron (NR_130785, intron 1 of 12) intron (NR_130785, intron 1 of 12) 95270 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 181.5-44 chr5 20326282 20326847 + 0.5 NA intron (NR_146519, intron 1 of 1) AluYm1|SINE|Alu 21013 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 183.833-15 chr16 8456191 8456597 + 0.5 NA Intergenic L1M2|LINE|L1 133444 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 232.833-21 chr8 81627518 81628459 + 0.5 NA intron (NR_146081, intron 1 of 7) intron (NR_146081, intron 1 of 7) 3289 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 173.333-41 chr3 34747676 34748159 + 0.5 NA Intergenic Intergenic 646106 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 157.833-36 chr2 38487141 38487712 + 0.5 NA intron (NR_110259, intron 2 of 4) AluSx1|SINE|Alu 28314 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 179.333-7 chr10 82977986 82978478 + 0.5 NA intron (NR_163253, intron 9 of 10) intron (NR_163253, intron 9 of 10) 698857 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 172.167-10 chr11 132621654 132622094 + 0.5 NA intron (NM_002545, intron 2 of 6) intron (NM_002545, intron 2 of 6) 321763 NM_001319106 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 117.833-33 chr16 87614029 87614333 + 0.5 NA intron (NM_020655, intron 1 of 4) intron (NM_020655, intron 1 of 4) 11673 NM_020655 57338 Hs.592068 NM_020655 ENSG00000154118 JPH3 CAGL237|HDL2|JP-3|JP3|TNRC22 junctophilin 3 protein-coding 220.5-15 chr2 79022296 79022786 + 0.5 NA Intergenic Intergenic -3161 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 158.833-9 chr10 91858703 91859276 + 0.5 NA intron (NM_025235, intron 24 of 26) AluSx|SINE|Alu 50497 NM_152429 143282 Hs.466120 NM_152429 ENSG00000174721 FGFBP3 C10orf13|FGF-BP3 fibroblast growth factor binding protein 3 protein-coding 192 chr1 66091628 66092159 + 0.5 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -41175 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 142-81 chr6 146560272 146560694 + 0.5 NA Intergenic L1M2|LINE|L1 16650 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 129.167-12 chr10 117115589 117116078 + 0.5 NA intron (NM_001258300, intron 1 of 17) MIRb|SINE|MIR 10753 NM_001258300 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 165.333-64 chr7 84223438 84223880 + 0.5 NA Intergenic Intergenic -28870 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 124.667-43 chr15 86244252 86244633 + 0.5 NA intron (NM_152336, intron 6 of 24) intron (NM_152336, intron 6 of 24) 72526 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 200.833-32 chr7 15039150 15039913 + 0.5 NA Intergenic Intergenic -64673 NM_001350722 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 157.167-23 chr14 47834250 47834874 + 0.5 NA Intergenic Intergenic -39548 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 129.833-21 chr14 73422088 73422502 + 0.5 NA intron (NM_001005743, intron 1 of 12) MER20B|DNA|hAT-Charlie 36285 NM_001005745 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 114-64 chr21 31655611 31656108 + 0.5 NA Intergenic Intergenic -3763 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 152-59 chrX 41206908 41207499 + 0.5 NA intron (NM_001039591, intron 32 of 44) AluSx1|SINE|Alu -68536 NR_135616 105373185 Hs.546119 NR_135616 ENSG00000223714 LINC02601 - long intergenic non-protein coding RNA 2601 ncRNA 123.667-63 chr20 55510624 55510986 + 0.5 NA Intergenic Intergenic -83608 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 120-28 chr13 29549176 29549619 + 0.5 NA intron (NM_003045, intron 2 of 12) intron (NM_003045, intron 2 of 12) 46291 NM_003045 6541 Hs.14846 NM_003045 ENSG00000139514 SLC7A1 ATRC1|CAT-1|ERR|HCAT1|REC1L solute carrier family 7 member 1 protein-coding 114.333-110 chr6 125640108 125640513 + 0.5 NA Intergenic Intergenic -34043 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 124.833-36 chr2 32818354 32818684 + 0.5 NA intron (NM_017735, intron 19 of 19) MER5B|DNA|hAT-Charlie -6914 NR_027098 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 135.5-36 chr17 60901113 60901602 + 0.5 NA intron (NM_001330413, intron 10 of 25) intron (NM_001330413, intron 10 of 25) 223506 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 129.5-45 chr2 117631006 117631446 + 0.5 NA Intergenic Intergenic -183465 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 150-48 chr21 38338630 38338971 + 0.5 NA intron (NR_110545, intron 1 of 5) ERV3-16A3_I-int|LTR|ERVL 7276 NR_110545 102724678 Hs.635675 NR_110545 LINC01423 - long intergenic non-protein coding RNA 1423 ncRNA 120.167-38 chr2 148303288 148303585 + 0.5 NA intron (NM_018328, intron 4 of 14) intron (NM_018328, intron 4 of 14) -281832 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 185.667-51 chr7 31810996 31811400 + 0.5 NA intron (NM_001191059, intron 16 of 18) THE1B|LTR|ERVL-MaLR 123983 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 128.167-89 chr8 136881821 136882207 + 0.5 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 351216 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 167-18 chr12 16979732 16980338 + 0.5 NA Intergenic L1M4c|LINE|L1 -8712 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 131.667-86 chr4 30727183 30727526 + 0.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 6985 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 167.167-53 chr6 141355206 141355753 + 0.5 NA Intergenic Intergenic 671665 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 200.167-36 chr4 67854510 67855331 + 0.5 NA intron (NM_004262, intron 2 of 9) L1MA4A|LINE|L1 29082 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 148.833-33 chr2 99833667 99834118 + 0.5 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) 271691 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 140.667-96 chrX 66030505 66031136 + 0.5 NA intron (NM_001184831, intron 2 of 5) intron (NM_001184831, intron 2 of 5) 9260 NM_001184831 11326 Hs.8904 NM_007268 ENSG00000155659 VSIG4 CRIg|Z39IG V-set and immunoglobulin domain containing 4 protein-coding 138.5-42 chr2 123903790 123904201 + 0.5 NA Intergenic MER20B|DNA|hAT-Charlie 121179 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 125.667-90 chr4 114461655 114461971 + 0.5 NA Intergenic AluJo|SINE|Alu -136589 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 137.333-44 chr19 45950790 45951174 + 0.5 NA intron (NM_002516, intron 3 of 3) MIR|SINE|MIR 22883 NM_002516 4858 Hs.375439 NM_002516 ENSG00000104967 NOVA2 ANOVA|NOVA3 NOVA alternative splicing regulator 2 protein-coding 152.167-23 chr18 7930168 7930574 + 0.5 NA intron (NM_002845, intron 5 of 30) intron (NM_002845, intron 5 of 30) 363055 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 192-14 chr14 51972833 51973291 + 0.5 NA Intergenic Intergenic -16484 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 174.167-36 chr6 155910908 155911433 + 0.5 NA Intergenic Intergenic -35627 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 187.833-2 chr1 75213510 75213916 + 0.5 NA exon (NM_001320285, exon 24 of 26) exon (NM_001320285, exon 24 of 26) 79325 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 123.833-62 chr7 126923500 126923970 + 0.5 NA intron (NM_001371085, intron 3 of 10) intron (NM_001371085, intron 3 of 10) 134449 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 162-58 chr5 102595093 102595661 + 0.5 NA intron (NR_047462, intron 1 of 1) MER5C|DNA|hAT-Charlie 14009 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 135.667-106 chr8 121308611 121309164 + 0.5 NA Intergenic L1ME3G|LINE|L1 -330459 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 131.167-7 chr1 216308834 216309290 + 0.5 NA intron (NM_206933, intron 9 of 71) intron (NM_206933, intron 9 of 71) 114334 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 203.5-10 chr11 118801565 118802340 + 0.5 NA Intergenic Intergenic -10788 NM_004397 1656 Hs.408461 NM_004397 ENSG00000110367 DDX6 HLR2|P54|RCK DEAD-box helicase 6 protein-coding 193.5-42 chr4 176701462 176701974 + 0.5 NA intron (NM_005429, intron 4 of 6) intron (NM_005429, intron 4 of 6) 91204 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 133.5-74 chr7 83539943 83540296 + 0.5 NA intron (NM_012431, intron 1 of 16) AluSx1|SINE|Alu 101312 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 161.5-13 chr16 11988250 11988833 + 0.5 NA intron (NM_032167, intron 1 of 20) AluJr|SINE|Alu 11807 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 113.667-36 chr12 79839379 79839788 + 0.5 NA intron (NM_001244990, intron 4 of 24) THE1C|LTR|ERVL-MaLR 74328 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 117.667-102 chr5 77187143 77187422 + 0.5 NA intron (NM_001349752, intron 1 of 21) Kanga1c|DNA|TcMar-Tc2 6978 NM_001349752 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 117-94 chr5 173787791 173788109 + 0.5 NA intron (NR_108028, intron 2 of 3) MIRb|SINE|MIR 2992 NR_108028 101928154 Hs.366725 NR_108028 LINC01485 - long intergenic non-protein coding RNA 1485 ncRNA 170.167-28 chr2 58146607 58146984 + 0.5 NA intron (NM_001130482, intron 12 of 12) intron (NM_001130482, intron 12 of 12) 94585 NR_156742 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 132.667-62 chr3 84863208 84863803 + 0.5 NA intron (NR_033860, intron 4 of 20) MER67C|LTR|ERV1 6070 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 134-49 chr17 35565120 35565534 + 0.5 NA Intergenic AluSz6|SINE|Alu -2787 NR_135479 105371743 NR_135479 SNHG30 LINC02001 small nucleolar RNA host gene 30 ncRNA 177.333-68 chr8 125035254 125035668 + 0.5 NA intron (NM_014846, intron 26 of 28) intron (NM_014846, intron 26 of 28) 36956 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 157.5-9 chr11 60059448 60059988 + 0.5 NA intron (NM_001031666, intron 1 of 4) L1PREC2|LINE|L1 3053 NM_006138 932 Hs.99960 NM_006138 ENSG00000149516 MS4A3 CD20L|HTM4 membrane spanning 4-domains A3 protein-coding 124.167-91 chr8 130678178 130678496 + 0.5 NA Intergenic Intergenic -234663 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 190.333-24 chr18 5146805 5147313 + 0.5 NA intron (NM_001330553, intron 1 of 1) intron (NM_001330553, intron 1 of 1) 50198 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 121.833-65 chr5 157332014 157332290 + 0.5 NA intron (NM_001037333, intron 20 of 30) intron (NM_001037333, intron 20 of 30) 13525 NM_001001343 408263 Hs.437066 NM_001001343 ENSG00000172568 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 152-5 chr1 171816109 171816432 + 0.5 NA Intergenic L2c|LINE|L2 -25228 NM_001350206 26052 Hs.654775 NM_015569 ENSG00000197959 DNM3 Dyna III dynamin 3 protein-coding 130.5-47 chr2 191847658 191848047 + 0.5 NA promoter-TSS (NM_004657) promoter-TSS (NM_004657) -764 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 156-58 chr4 53001963 53002395 + 0.5 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 139862 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 122.333-36 chr14 86242599 86243094 + 0.5 NA Intergenic L1MC2|LINE|L1 308168 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 138.5-15 chr11 40346753 40347342 + 0.5 NA intron (NM_020929, intron 2 of 4) Tigger1|DNA|TcMar-Tigger -53917 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 180.667-66 chr7 22423161 22423921 + 0.5 NA intron (NM_207342, intron 4 of 4) L1MB8|LINE|L1 -66387 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 118.667-47 chr18 32457962 32458279 + 0.5 NA intron (NM_001242409, intron 1 of 5) intron (NM_001242409, intron 1 of 5) 12762 NM_022751 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 122.833-36 chr16 59711103 59711509 + 0.5 NA Intergenic MIRb|SINE|MIR 43885 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 140.5-16 chr12 33161335 33161859 + 0.5 NA Intergenic Intergenic -264751 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 174.833-48 chr7 100072667 100073331 + 0.5 NA intron (NM_001371218, intron 5 of 5) intron (NM_001371218, intron 5 of 5) 8724 NM_001362776 7551 Hs.435302 NM_017715 ENSG00000166526 ZNF3 A8-51|HF.12|KOX25|PP838|Zfp113 zinc finger protein 3 protein-coding 118.833-74 chr9 33928704 33929257 + 0.5 NA intron (NR_163243, intron 15 of 24) intron (NR_163243, intron 15 of 24) 5384 NM_001282530 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 133.167-61 chr7 48039000 48039302 + 0.5 NA intron (NM_001100159, intron 2 of 8) MER4D1|LTR|ERV1 3608 NM_001267866 136288 Hs.258357 NM_001100159 ENSG00000164746 C7orf57 - chromosome 7 open reading frame 57 protein-coding 133.5-53 chr5 21774773 21775216 + 0.5 NA intron (NM_004061, intron 11 of 14) MER5A|DNA|hAT-Charlie -109460 NR_132787 106635539 NR_132787 SNORA105A - small nucleolar RNA, H/ACA box 105A snoRNA 174.833-52 chr9 87352821 87353199 + 0.5 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -144218 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 144.833-72 chr8 89639211 89639540 + 0.5 NA Intergenic Intergenic 118336 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 123-87 chr8 136355050 136355471 + 0.5 NA Intergenic MIRb|SINE|MIR -175538 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 120.5-27 chr13 48607763 48608165 + 0.5 NA Intergenic L1MA3|LINE|L1 -27063 NR_051983 100129597 Hs.175225 NR_051983 ENSG00000233610 LINC00462 - long intergenic non-protein coding RNA 462 ncRNA 118.167-16 chr13 86971060 86971562 + 0.5 NA Intergenic Intergenic 59391 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 183.167-48 chr5 90275136 90275575 + 0.5 NA intron (NR_120601, intron 1 of 5) intron (NR_120601, intron 1 of 5) 14716 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 186.667-53 chr3 98560426 98561229 + 0.5 NA Intergenic MLT1F|LTR|ERVL-MaLR 28849 NM_005290 2838 Hs.162987 NM_005290 ENSG00000154165 GPR15 BOB G protein-coupled receptor 15 protein-coding 159.667-6 chr1 114922986 114923478 + 0.5 NA intron (NM_001282542, intron 20 of 30) L1M5|LINE|L1 68369 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 168.833-45 chr5 34411789 34412234 + 0.5 NA Intergenic MER4C|LTR|ERV1 -167287 NR_146599 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 132.167-64 chr7 77764178 77764476 + 0.5 NA intron (NM_198467, intron 3 of 7) intron (NM_198467, intron 3 of 7) 34107 NM_032936 85025 Hs.19025 NM_032936 ENSG00000135211 TMEM60 C7orf35|DC32 transmembrane protein 60 protein-coding 174.333-44 chr5 26808015 26808485 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 230336 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 183.5-3 chr1 157891215 157891729 + 0.5 NA Intergenic L1ME3G|LINE|L1 -34495 NR_135760 105371458 Hs.591494 NR_135760 ENSG00000236957 LOC105371458 - uncharacterized LOC105371458 ncRNA 188.5-14 chr12 61855153 61855648 + 0.5 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 337439 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 147.333-80 chr7 20725412 20725955 + 0.5 NA intron (NM_178559, intron 12 of 18) intron (NM_178559, intron 12 of 18) 61203 NM_198956 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 149.667-77 chr8 131197743 131198115 + 0.5 NA Intergenic Intergenic -157020 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 139.833-46 chr2 212809336 212809812 + 0.5 NA intron (NR_131941, intron 1 of 4) MER1B|DNA|hAT-Charlie 14243 NR_131942 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 116.333-86 chr5 124100228 124100513 + 0.5 NA intron (NR_125774, intron 4 of 5) AluSp|SINE|Alu 338150 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 140.167-52 chr5 41227339 41227817 + 0.5 NA intron (NM_001115131, intron 1 of 17) L1MA8|LINE|L1 -14046 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 125.333-21 chr10 93392535 93392961 + 0.5 NA intron (NM_133337, intron 16 of 52) intron (NM_133337, intron 16 of 52) 89586 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 147.333-36 chr19 28688265 28688578 + 0.5 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 39273 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 176.333-9 chr10 51868797 51869279 + 0.5 NA intron (NM_001098512, intron 4 of 17) intron (NM_001098512, intron 4 of 17) -169443 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 125-83 chr7 37915038 37915477 + 0.5 NA intron (NM_003014, intron 1 of 5) intron (NM_003014, intron 1 of 5) 1560 NM_003014 6424 Hs.658169 NM_003014 ENSG00000106483 SFRP4 FRP-4|FRPHE|FRZB-2|PYL|sFRP-4 secreted frizzled related protein 4 protein-coding 138.833-35 chr2 72254918 72255313 + 0.5 NA intron (NR_135773, intron 19 of 21) MLT1D-int|LTR|ERVL-MaLR -107253 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 144-19 chr14 69827317 69827688 + 0.5 NA Intergenic MLT2A1|LTR|ERVL 15742 NR_149012 100506358 NR_149012 LOC100506358 - uncharacterized LOC100506358 ncRNA 131.5-90 chr9 134083620 134084099 + 0.5 NA Intergenic AluJo|SINE|Alu -15833 NM_007371 8019 Hs.522472 NM_007371 ENSG00000169925 BRD3 ORFX|RING3L bromodomain containing 3 protein-coding 146.833-32 chr2 222713538 222713933 + 0.5 NA Intergenic Intergenic 42077 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 122.667-20 chr12 96036170 96036547 + 0.5 NA promoter-TSS (NM_000895) promoter-TSS (NM_000895) -697 NR_132659 4048 Hs.524648 NM_000895 ENSG00000111144 LTA4H - leukotriene A4 hydrolase protein-coding 115.667-49 chr2 45089659 45090089 + 0.5 NA Intergenic Intergenic -80422 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 143.167-6 chr1 168935410 168935798 + 0.5 NA intron (NR_104091, intron 3 of 4) L1PB1|LINE|L1 148663 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 125.333-73 chr21 33899739 33900194 + 0.5 NA TTS (NM_003024) TTS (NM_003024) 15838 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5PO ATP5O|ATPO|HMC08D05|OSCP ATP synthase peripheral stalk subunit OSCP protein-coding 156.833-63 chr9 74859320 74859960 + 0.5 NA intron (NM_017662, intron 1 of 38) AluSx1|SINE|Alu 27707 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 118.667-52 chr19 48211037 48211402 + 0.5 NA non-coding (NR_033679, exon 10 of 10) non-coding (NR_033679, exon 10 of 10) 29844 NR_033679 22900 Hs.68846 NM_014959 ENSG00000105483 CARD8 CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN caspase recruitment domain family member 8 protein-coding 145.833-24 chr15 23989330 23989721 + 0.5 NA intron (NR_126392, intron 3 of 5) MER83B-int|LTR|ERV1 14378 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 154.5-23 chr14 57641924 57642414 + 0.5 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -148312 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 137.167-42 chr3 11660982 11661499 + 0.5 NA intron (NM_014667, intron 2 of 5) L1M7|LINE|L1 -17325 NM_001128219 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 118.667-104 chr7 10847220 10847613 + 0.5 NA Intergenic Intergenic -67472 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 144.5-11 chr10 75156408 75156742 + 0.5 NA intron (NM_001174156, intron 2 of 5) L1MC4|LINE|L1 44919 NM_144660 142891 Hs.744986 NM_144660 ENSG00000156671 SAMD8 HEL-177|SMSr sterile alpha motif domain containing 8 protein-coding 142.167-20 chr13 38191523 38191912 + 0.5 NA Intergenic AluSz|SINE|Alu -48485 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 152.5-53 chr5 106253940 106254316 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR 756886 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 127.833-30 chr17 44715207 44715679 + 0.5 NA intron (NM_145663, intron 2 of 13) AluSq2|SINE|Alu 6778 NR_036623 80174 Hs.369998 NM_025104 ENSG00000161692 DBF4B ASKL1|CHIFB|DRF1|ZDBF1B DBF4 zinc finger B protein-coding 171.667-63 chr5 41631507 41632153 + 0.5 NA Intergenic L1ME1|LINE|L1 -121229 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 196.5-17 chr18 66659385 66659803 + 0.5 NA Intergenic MER20|DNA|hAT-Charlie -55504 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 171-28 chr2 182015825 182016247 + 0.5 NA intron (NM_001261425, intron 2 of 5) L1MA3|LINE|L1 30183 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 147.333-15 chr11 113373061 113373632 + 0.5 NA TTS (NR_147891) TTS (NR_147891) -14433 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 129.333-43 chr2 25415691 25416140 + 0.5 NA intron (NM_001351389, intron 15 of 15) MER21C|LTR|ERVL -73325 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 147.5-85 chr8 140212685 140213192 + 0.5 NA intron (NM_001160372, intron 17 of 22) AluSc|SINE|Alu -112403 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 128.667-100 chr6 54367526 54368013 + 0.5 NA intron (NM_014464, intron 9 of 10) MLT1A0|LTR|ERVL-MaLR 59328 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 161-51 chr5 60991152 60991668 + 0.5 NA intron (NM_174889, intron 1 of 3) L1MA1|LINE|L1 46205 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 174.833-51 chr8 136603509 136603945 + 0.5 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 72929 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 140.667-25 chr14 54196653 54197100 + 0.5 NA Intergenic Intergenic -199992 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 136.167-30 chr18 5412493 5412842 + 0.5 NA intron (NM_001281535, intron 14 of 21) MIRb|SINE|MIR -115614 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 156.833-32 chr22 23237534 23238214 + 0.5 NA intron (NM_004327, intron 1 of 22) intron (NM_004327, intron 1 of 22) -24893 NR_033408 26226 Hs.729589 NR_033408 ENSG00000230701 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 117.833-53 chr3 118184374 118184786 + 0.5 NA Intergenic L1PA16|LINE|L1 -457188 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 142.667-95 chr7 90280246 90280576 + 0.5 NA intron (NM_001039706, intron 12 of 22) AluJb|SINE|Alu 35237 NM_001039706 79846 Hs.521014 NM_024788 ENSG00000105792 CFAP69 C7orf63|FAP69|SPGF24 cilia and flagella associated protein 69 protein-coding 125.833-42 chr2 79545340 79545714 + 0.5 NA intron (NM_001282598, intron 1 of 17) MLT1J|LTR|ERVL-MaLR 22344 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 166.833-23 chr2 44610002 44610342 + 0.5 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 248225 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 134.333-38 chr15 27813538 27813905 + 0.5 NA intron (NM_001300984, intron 22 of 22) intron (NM_001300984, intron 22 of 22) 285594 NM_000275 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 125.5-72 chr6 154377969 154378349 + 0.5 NA Intergenic Intergenic -21393 NM_001130700 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 146.667-83 chr7 16295132 16295731 + 0.5 NA intron (NR_160656, intron 3 of 7) intron (NR_160656, intron 3 of 7) 84945 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 181.333-48 chr5 161337405 161337953 + 0.5 NA intron (NM_000813, intron 6 of 9) intron (NM_000813, intron 6 of 9) 210445 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 188.667-3 chr1 179892474 179892976 + 0.5 NA intron (NM_001267578, intron 3 of 9) AluY|SINE|Alu 10683 NM_001267578 26092 Hs.496459 NM_015602 ENSG00000143337 TOR1AIP1 LAP1|LAP1B|LGMD2Y torsin 1A interacting protein 1 protein-coding 173.5-59 chr9 35902861 35903333 + 0.5 NA Intergenic L1M6B|LINE|L1 -3105 NM_001039792 646962 Hs.208081 NM_001039792 ENSG00000196196 HRCT1 LGLL338|PRO537|UNQ338 histidine rich carboxyl terminus 1 protein-coding 159-60 chr5 78084871 78085326 + 0.5 NA intron (NM_003664, intron 22 of 26) L1ME4c|LINE|L1 126851 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 134.667-37 chr16 80306097 80306491 + 0.5 NA intron (NR_120307, intron 2 of 5) MER4D|LTR|ERV1 -234440 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 153-11 chr10 69419756 69420189 + 0.5 NA Intergenic Intergenic -3054 NM_001057 6865 Hs.88372 NM_001057 ENSG00000075073 TACR2 NK2R|NKNAR|SKR|TAC2R tachykinin receptor 2 protein-coding 214.667 chr1 12441367 12441956 + 0.5 NA intron (NM_015378, intron 65 of 69) intron (NM_015378, intron 65 of 69) -65585 NR_003025 677885 Hs.658450 NR_003025 ENSG00000239149 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 119.167-43 chr2 56528138 56528542 + 0.5 NA Intergenic Intergenic -342570 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 115.667-79 chr4 39893695 39894012 + 0.5 NA intron (NM_001100399, intron 16 of 32) MIRc|SINE|MIR 84058 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 144.167-22 chr14 56266258 56266879 + 0.5 NA intron (NM_021255, intron 2 of 5) L1ME4b|LINE|L1 148157 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 140.167-26 chr16 63687513 63687933 + 0.5 NA Intergenic L1M2|LINE|L1 1434340 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 172.5-11 chr11 10183256 10183893 + 0.5 NA intron (NM_030962, intron 2 of 39) L1M5|LINE|L1 110633 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 146.167-8 chr10 30573381 30573693 + 0.5 NA Intergenic AluSp|SINE|Alu 56216 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 128-10 chr10 37953138 37953643 + 0.5 NA intron (NR_138064, intron 6 of 6) intron (NR_138064, intron 6 of 6) 22590 NR_138069 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 195.167-31 chr5 103793039 103793849 + 0.5 NA Intergenic MER54A|LTR|ERVL -230655 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 152.333-9 chr11 22604214 22604666 + 0.5 NA Intergenic Intergenic 21401 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF FA complementation group F protein-coding 127.333-28 chr12 85988033 85988405 + 0.5 NA intron (NM_001351284, intron 4 of 5) intron (NM_001351284, intron 4 of 5) 113924 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 125.167-50 chr3 4845086 4845368 + 0.5 NA intron (NM_001168272, intron 60 of 60) intron (NM_001168272, intron 60 of 60) 61274 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 157.333-80 chrX 40498055 40498369 + 0.5 NA Intergenic Intergenic -82758 NM_005765 10159 Hs.495960 NM_005765 ENSG00000182220 ATP6AP2 APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS ATPase H+ transporting accessory protein 2 protein-coding 125-4 chr1 100409495 100409886 + 0.5 NA intron (NM_001319212, intron 4 of 13) THE1B-int|LTR|ERVL-MaLR 57184 NM_003672 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|DFNB32|DFNB35|cdc14|hCDC14 cell division cycle 14A protein-coding 123-78 chr6 99331920 99332261 + 0.5 NA intron (NM_001346533, intron 3 of 5) intron (NM_001346533, intron 3 of 5) 17584 NM_032511 84553 Hs.573245 NM_032511 ENSG00000146267 FAXC C6orf168|dJ273F20 failed axon connections homolog, metaxin like GST domain containing protein-coding 129.833-22 chr14 80178209 80178639 + 0.5 NA Intergenic L2a|LINE|L2 -32995 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 170-22 chr15 68465230 68465611 + 0.5 NA Intergenic L2b|LINE|L2 -33257 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 124.333-11 chr10 57047901 57048338 + 0.5 NA Intergenic Intergenic 256440 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 187-25 chr22 25057314 25058062 + 0.5 NA intron (NM_001145206, intron 4 of 10) AluJo|SINE|Alu 29714 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 117.833-55 chr4 52646752 52647029 + 0.5 NA intron (NM_001286767, intron 1 of 8) L1ME4b|LINE|L1 9649 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 148.333-104 chr8 82175153 82175531 + 0.5 NA Intergenic L2c|LINE|L2 -333056 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 144.5-55 chr3 21458953 21459399 + 0.5 NA intron (NM_024697, intron 4 of 7) intron (NM_024697, intron 4 of 7) 53450 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 139.833-14 chr11 94501466 94501832 + 0.5 NA Intergenic Intergenic 7665 NM_017704 54851 Hs.29052 NM_017704 ENSG00000168876 ANKRD49 FGIF|GBIF ankyrin repeat domain 49 protein-coding 127.333-115 chr8 95524013 95524331 + 0.5 NA intron (NR_038207, intron 2 of 2) intron (NR_038207, intron 2 of 2) -254971 NM_001363260 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 137.333-8 chr1 216117395 216117867 + 0.5 NA intron (NM_206933, intron 21 of 71) intron (NM_206933, intron 21 of 71) 45166 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 140.833-46 chr4 71479132 71479564 + 0.5 NA intron (NM_003759, intron 11 of 22) intron (NM_003759, intron 11 of 22) 140295 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 144.5-34 chr16 22403084 22403491 + 0.5 NA intron (NR_136333, intron 3 of 3) intron (NR_136333, intron 3 of 3) 17518 NR_136333 105371130 Hs.639607 NR_136333 MFSD13B - major facilitator superfamily domain containing 13B (pseudogene) pseudo 149.167-34 chr21 29245769 29246155 + 0.5 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 52468 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 115.167-116 chr9 106252190 106252702 + 0.5 NA Intergenic Intergenic -348482 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 161.167-19 chr14 63212014 63212527 + 0.5 NA intron (NM_020663, intron 1 of 4) MLT1J2|LTR|ERVL-MaLR 7827 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 145.5-75 chr8 77755059 77755443 + 0.5 NA Intergenic L1ME1|LINE|L1 304554 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 136.5-23 chr12 47192885 47193181 + 0.5 NA intron (NM_001281429, intron 2 of 2) L2c|LINE|L2 5221 NR_039847 100616486 NR_039847 ENSG00000263838 MIR4698 - microRNA 4698 ncRNA 134.5-57 chr4 55021060 55021379 + 0.5 NA Intergenic Intergenic 104376 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 193-41 chr7 93500534 93501150 + 0.5 NA intron (NM_001164737, intron 2 of 15) intron (NM_001164737, intron 2 of 15) -16823 NR_030164 574442 NR_030164 ENSG00000207656 MIR489 MIRN489|hsa-mir-489|mir-489 microRNA 489 ncRNA 145.833-62 chr4 174764118 174764745 + 0.5 NA intron (NM_006529, intron 3 of 9) intron (NM_006529, intron 3 of 9) 64816 NM_006529 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 135.167-61 chr21 27573647 27573949 + 0.5 NA Intergenic (AGATAG)n|Simple_repeat|Simple_repeat -148581 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 173.5-43 chr5 24208906 24209385 + 0.5 NA Intergenic Intergenic 257797 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 128.167-4 chr10 21532590 21532949 + 0.5 NA promoter-TSS (NM_001324296) promoter-TSS (NM_001324296) -580 NM_001324296 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 128.667-28 chr11 105795765 105796196 + 0.5 NA intron (NR_046356, intron 3 of 16) intron (NR_046356, intron 3 of 16) 185274 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 138.833-51 chr21 29913895 29914287 + 0.5 NA intron (NM_000830, intron 1 of 16) MER20|DNA|hAT-Charlie 25905 NM_001320621 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 127.333-113 chr8 86050127 86050530 + 0.5 NA intron (NM_033126, intron 2 of 2) LTR56|LTR|ERV1 19340 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 135.5-59 chr4 62404606 62404970 + 0.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR -243023 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 124.667-119 chr8 40165367 40165669 + 0.5 NA Intergenic Intergenic 12036 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 132.167-32 chr2 9874355 9874824 + 0.5 NA intron (NM_001318977, intron 6 of 13) L2a|LINE|L2 31115 NM_005680 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 145.333-31 chr15 76441663 76442036 + 0.5 NA intron (NR_148227, intron 25 of 32) L2a|LINE|L2 105076 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 138.667-11 chr10 66942843 66943330 + 0.5 NA intron (NM_178011, intron 2 of 2) intron (NM_178011, intron 2 of 2) 17050 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 142.5-76 chrX 48651088 48651640 + 0.5 NA Intergenic Intergenic -32433 NM_000377 7454 Hs.2157 NM_000377 ENSG00000015285 WAS IMD2|SCNX|THC|THC1|WASP|WASPA WASP actin nucleation promoting factor protein-coding 135.833-44 chr22 34959452 34959982 + 0.5 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 38199 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 163.333-63 chr5 43551063 43551622 + 0.5 NA intron (NM_006451, intron 2 of 10) L1M5|LINE|L1 5735 NM_006451 10605 Hs.482038 NM_006451 ENSG00000172239 PAIP1 - poly(A) binding protein interacting protein 1 protein-coding 186.167-14 chr12 95207737 95208169 + 0.5 NA intron (NM_018351, intron 2 of 20) intron (NM_018351, intron 2 of 20) 9514 NM_018351 55785 Hs.506381 NM_018351 ENSG00000180263 FGD6 ZFYVE24 FYVE, RhoGEF and PH domain containing 6 protein-coding 129.833 chr1 48329128 48329496 + 0.5 NA intron (NM_001286238, intron 11 of 12) L1M5|LINE|L1 106596 NM_001135181 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 120.333-31 chr12 9035479 9035884 + 0.5 NA Intergenic L1PA15|LINE|L1 29389 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 116.667-32 chr14 40565747 40566198 + 0.5 NA Intergenic L1MA2|LINE|L1 -388739 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 116.833-29 chr2 190159219 190159697 + 0.5 NA intron (NM_001042520, intron 1 of 1) intron (NM_001042520, intron 1 of 1) 9212 NM_001042520 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 157.333-6 chr1 227657858 227658367 + 0.5 NA 3' UTR (NM_001367910, exon 5 of 5) 3' UTR (NM_001367910, exon 5 of 5) 39595 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 171.667-82 chr7 92614790 92615362 + 0.5 NA 3' UTR (NM_001145306, exon 8 of 8) 3' UTR (NM_001145306, exon 8 of 8) -24686 NR_109929 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 141.833-13 chr14 85203051 85203448 + 0.5 NA Intergenic Intergenic -68683 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 114-2 chr1 49582475 49582800 + 0.5 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -110552 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 169.667-43 chr2 237572690 237573145 + 0.5 NA Intergenic Intergenic 6343 NM_015893 51052 Hs.247710 NM_015893 ENSG00000071677 PRLH PRH|PRRP prolactin releasing hormone protein-coding 145.833-27 chr16 2806629 2807103 + 0.5 NA Intergenic LTR47A2|LTR|ERVL -10334 NR_145775 109616997 NR_145775 ENSG00000221719 SNORA3C - small nucleolar RNA, H/ACA box 3C snoRNA 118.333-32 chr14 68459851 68460286 + 0.5 NA intron (NM_133509, intron 9 of 10) intron (NM_133509, intron 9 of 10) 168719 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 121.5-55 chr2 127055103 127055484 + 0.5 NA intron (NM_139344, intron 11 of 17) intron (NM_139344, intron 11 of 17) 26772 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 139.833-62 chr5 63668375 63668764 + 0.5 NA Intergenic L1PA16|LINE|L1 293723 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 119.167-97 chr8 122973705 122974034 + 0.5 NA 3' UTR (NM_014943, exon 4 of 4) 3' UTR (NM_014943, exon 4 of 4) 51903 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 169.5-20 chr14 50711941 50712492 + 0.5 NA Intergenic AluSx1|SINE|Alu -43910 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 139.5-49 chr4 123848250 123848676 + 0.5 NA intron (NR_027105, intron 4 of 5) intron (NR_027105, intron 4 of 5) 74199 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 142.167-75 chr7 135629812 135630284 + 0.5 NA intron (NM_015135, intron 34 of 42) intron (NM_015135, intron 34 of 42) -32466 NM_001130929 647087 Hs.200022 NM_001130929 ENSG00000243317 STMP1 C7orf73|PL-5283 short transmembrane mitochondrial protein 1 protein-coding 123.167-86 chr6 143626467 143626880 + 0.5 NA intron (NM_014721, intron 1 of 12) intron (NM_014721, intron 1 of 12) 18493 NM_001100166 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 141.167-42 chr2 99964270 99964629 + 0.5 NA intron (NM_001025108, intron 6 of 23) L1MDa|LINE|L1 141134 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 151-42 chr21 34340726 34341180 + 0.5 NA Intergenic AluSx1|SINE|Alu -23071 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 150.5-19 chr12 29745643 29746159 + 0.5 NA intron (NM_001367875, intron 5 of 19) intron (NM_001367875, intron 5 of 19) 38041 NM_001193451 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 164.333-2 chr1 162114192 162114802 + 0.5 NA intron (NM_014697, intron 1 of 9) MLT2C1|LTR|ERVL -42610 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 120-56 chr2 79845800 79846303 + 0.5 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 20532 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 135-55 chr22 25854241 25854564 + 0.5 NA intron (NM_001318245, intron 21 of 43) MIR3|SINE|MIR 112214 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 116.5-50 chr3 51310377 51310787 + 0.5 NA intron (NM_004947, intron 28 of 52) intron (NM_004947, intron 28 of 52) -74709 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 117.167-15 chr12 48522612 48523144 + 0.5 NA Intergenic Intergenic -2754 NM_001005203 341568 Hs.524373 NM_001005203 ENSG00000284723 OR8S1 - olfactory receptor family 8 subfamily S member 1 protein-coding 117.667-7 chr1 215948602 215948968 + 0.5 NA intron (NM_206933, intron 37 of 71) intron (NM_206933, intron 37 of 71) -123680 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 120.833-2 chr1 177705705 177706222 + 0.5 NA intron (NR_110722, intron 2 of 3) intron (NR_110722, intron 2 of 3) 5439 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 116.167-45 chr3 15068226 15068692 + 0.5 NA Intergenic AluJb|SINE|Alu -3144 NR_135246 64432 Hs.657764 NM_022497 ENSG00000131368 MRPS25 MRP-S25|RPMS25 mitochondrial ribosomal protein S25 protein-coding 124.833-81 chr7 6585469 6585898 + 0.5 NA intron (NM_001371296, intron 7 of 7) AluSx|SINE|Alu -4338 NM_001303039 79034 Hs.487511 NM_024067 ENSG00000146576 C7orf26 - chromosome 7 open reading frame 26 protein-coding 192.167-14 chr17 15980942 15981419 + 0.5 NA intron (NM_001042697, intron 3 of 4) intron (NM_001042697, intron 3 of 4) 18524 NM_001042697 125150 Hs.593985 NM_001042697 ENSG00000214941 ZSWIM7 SWS1 zinc finger SWIM-type containing 7 protein-coding 157-77 chr7 141256553 141257012 + 0.5 NA intron (NM_001195278, intron 2 of 3) L2a|LINE|L2 182718 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 145.167-41 chr21 37217897 37218240 + 0.5 NA intron (NR_026719, intron 2 of 2) intron (NR_026719, intron 2 of 2) 9565 NR_026719 257203 Hs.505159 NM_148675 ENSG00000230366 DSCR9 NCRNA00038 Down syndrome critical region 9 ncRNA 161.167-51 chr7 10569556 10569979 + 0.5 NA intron (NR_147499, intron 1 of 2) MIRb|SINE|MIR -132909 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 142.667-27 chr14 19919152 19919536 + 0.5 NA Intergenic Intergenic -1263 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 121.667-36 chr17 57980111 57980642 + 0.5 NA intron (NM_001330393, intron 5 of 6) intron (NM_001330393, intron 5 of 6) 7878 NM_001330393 7716 Hs.463569 NM_007146 ENSG00000136451 VEZF1 DB1|ZNF161 vascular endothelial zinc finger 1 protein-coding 144-63 chr5 168129538 168129889 + 0.5 NA intron (NM_001368145, intron 11 of 26) intron (NM_001368145, intron 11 of 26) -36132 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 135.833-48 chr3 88144862 88145437 + 0.5 NA TTS (NM_001350134) TTS (NM_001350134) 4717 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 122.833-80 chr7 24753225 24753695 + 0.5 NA intron (NM_004403, intron 1 of 9) L1ME4b|LINE|L1 4004 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 127.667-102 chr9 36457069 36457545 + 0.5 NA Intergenic Intergenic -56109 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 165.5-22 chr14 51051230 51051783 + 0.5 NA intron (NM_015163, intron 1 of 9) intron (NM_015163, intron 1 of 9) 44198 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 128.667-42 chr14 78642657 78643097 + 0.5 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 239158 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 125.833-83 chr7 113354321 113354891 + 0.5 NA Intergenic Intergenic -236024 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 118-16 chr10 79225141 79225479 + 0.5 NA intron (NM_020338, intron 7 of 24) MER113|DNA|hAT-Charlie -122159 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 116.333-26 chr11 123902552 123903058 + 0.5 NA Intergenic MER33|DNA|hAT-Charlie -3627 NM_001005197 338662 Hs.449688 NM_001005197 ENSG00000181518 OR8D4 OR11-275 olfactory receptor family 8 subfamily D member 4 protein-coding 145.333-47 chr3 12354202 12354735 + 0.5 NA intron (NM_015869, intron 1 of 6) AluY|SINE|Alu 2966 NM_015869 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 171.667-32 chr15 94466398 94466825 + 0.5 NA intron (NM_018349, intron 19 of 21) intron (NM_018349, intron 19 of 21) 110681 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 117.333-86 chr5 43015287 43015549 + 0.5 NA TTS (NR_034085) TTS (NR_034085) 3393 NR_034085 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 223.5-7 chr14 53030735 53031223 + 0.5 NA Intergenic L1ME4b|LINE|L1 -79882 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 182.333-55 chr5 54104348 54104949 + 0.5 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -153049 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 144.833-4 chr1 87772167 87772666 + 0.5 NA Intergenic L1M5|LINE|L1 -400761 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 180.5-20 chr17 39050988 39051362 + 0.5 NA intron (NR_033753, intron 4 of 4) intron (NR_033753, intron 4 of 4) -5844 NR_036551 100131347 Hs.676510 NR_036551 ENSG00000263818 RDM1P5 - RDM1 pseudogene 5 pseudo 167.333-70 chr9 74038206 74038761 + 0.5 NA Intergenic Intergenic -333048 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 143.167-65 chr5 24461958 24462338 + 0.5 NA Intergenic Intergenic 182830 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 113.5-66 chr3 192947155 192947582 + 0.5 NA Intergenic Intergenic -29512 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 134.167-35 chr2 27161148 27161466 + 0.5 NA Intergenic FLAM_A|SINE|Alu 12303 NM_175769 150921 Hs.591583 NM_175769 ENSG00000163792 TCF23 OUT|TCF-23|bHLHa24 transcription factor 23 protein-coding 119.667-85 chr5 151937623 151938117 + 0.5 NA Intergenic Intergenic -13019 NM_001146040 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 150-17 chr13 82918757 82919131 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 963449 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 154.5-28 chr18 5086848 5087177 + 0.5 NA intron (NR_146900, intron 2 of 3) HERV9N-int|LTR|ERV1 5830 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 160.833-3 chr1 33355817 33356249 + 0.5 NA intron (NM_198040, intron 6 of 13) L2c|LINE|L2 5681 NR_125978 101929464 Hs.568627 NR_125978 ENSG00000233246 LOC101929464 - uncharacterized LOC101929464 ncRNA 166.5-52 chr5 113140308 113140817 + 0.5 NA intron (NM_001085377, intron 5 of 18) ERVL-E-int|LTR|ERVL 154376 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 117.5-54 chr5 33068078 33068450 + 0.5 NA Intergenic AluSx|SINE|Alu 120821 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 144.833-14 chr11 127218701 127219123 + 0.5 NA Intergenic L2a|LINE|L2 -52158 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 193.833-40 chr8 130937724 130938371 + 0.5 NA intron (NM_001115, intron 4 of 17) intron (NM_001115, intron 4 of 17) 102862 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 129.167-83 chr8 116322345 116322913 + 0.5 NA intron (NR_046215, intron 1 of 13) MER20|DNA|hAT-Charlie 2430 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 132-45 chr2 186120043 186120445 + 0.5 NA Intergenic L1ME1|LINE|L1 -33927 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 175.167-34 chr3 94254213 94254670 + 0.5 NA Intergenic Intergenic 191380 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 169.833-29 chr6 27887731 27888344 + 0.5 NA Intergenic MER41E|LTR|ERV1 2755 NM_003535 8356 Hs.484990 NM_003535 ENSG00000197153 HIST1H3J H3/j|H3FJ histone cluster 1 H3 family member j protein-coding 156.333-5 chr1 62092582 62093147 + 0.5 NA intron (NM_001350145, intron 33 of 43) AluSx|SINE|Alu -14008 NR_036059 100422946 NR_036059 ENSG00000283690 MIR3116-2 - microRNA 3116-2 ncRNA 159.167-32 chr20 36735191 36735618 + 0.5 NA intron (NM_032013, intron 1 of 15) Tigger4a|DNA|TcMar-Tigger 10686 NM_022477 57446 Hs.437338 NM_022477 ENSG00000101079 NDRG3 - NDRG family member 3 protein-coding 153.5-3 chr1 87368910 87369315 + 0.5 NA intron (NR_038324, intron 1 of 3) intron (NR_038324, intron 1 of 3) 2543 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 143.333-68 chr5 76204585 76205191 + 0.5 NA intron (NM_014979, intron 3 of 12) intron (NM_014979, intron 3 of 12) 121505 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 212.833-25 chr8 135579352 135579788 + 0.5 NA intron (NM_006558, intron 5 of 8) AluSz|SINE|Alu 122114 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 121.333-48 chr2 60511354 60511704 + 0.5 NA intron (NM_138559, intron 2 of 4) intron (NM_138559, intron 2 of 4) 41969 NM_001363864 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 114.667-3 chr1 71840858 71841243 + 0.5 NA intron (NM_173808, intron 2 of 6) MLT2D|LTR|ERVL -4038 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 117.5-22 chr18 71922553 71922853 + 0.5 NA Intergenic L1PA14|LINE|L1 -140477 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 224.167-30 chr9 23156308 23156914 + 0.5 NA Intergenic Intergenic 510411 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 162.667-36 chr2 13602835 13603381 + 0.5 NA Intergenic Intergenic -596095 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 165.167-22 chr2 62573416 62573868 + 0.5 NA Intergenic MER44D|DNA|TcMar-Tigger -67447 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 139.5-63 chr6 162730763 162731215 + 0.5 NA intron (NM_001080379, intron 1 of 4) intron (NM_001080379, intron 1 of 4) 3019 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 123.167-60 chr3 31608285 31608703 + 0.5 NA intron (NM_178862, intron 5 of 15) intron (NM_178862, intron 5 of 15) 75569 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 137.667-101 chrX 97294094 97294461 + 0.5 NA intron (NM_007309, intron 23 of 26) intron (NM_007309, intron 23 of 26) 270258 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 201.167-20 chr5 2530042 2530696 + 0.5 NA Intergenic Intergenic -182222 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 114-3 chr1 55173496 55174061 + 0.5 NA intron (NM_015306, intron 3 of 67) intron (NM_015306, intron 3 of 67) 41586 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 145-38 chr18 1153835 1154276 + 0.5 NA Intergenic L1MA2|LINE|L1 205574 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 153.833-19 chr13 52094589 52095133 + 0.5 NA intron (NM_199289, intron 12 of 21) intron (NM_199289, intron 12 of 21) -34034 NR_110306 101929657 Hs.637461 NR_110306 ENSG00000273523 LOC101929657 - uncharacterized LOC101929657 ncRNA 124.667-50 chr17_GL000205v2_random 19344 19901 + 0.5 NA Intergenic CER|Satellite|Satellite 38344 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 182.5-43 chr8 124057428 124057941 + 0.5 NA intron (NM_001039112, intron 22 of 40) L1MEg|LINE|L1 -16902 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 141.167-76 chr8 137705819 137706190 + 0.5 NA Intergenic Intergenic -292416 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 126-37 chr18 56508258 56508678 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR 130124 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 137-101 chr9 99859005 99859566 + 0.5 NA intron (NM_006981, intron 7 of 7) intron (NM_006981, intron 7 of 7) 37400 NM_173199 8013 Hs.279522 NM_006981 ENSG00000119508 NR4A3 CHN|CSMF|MINOR|NOR1|TEC nuclear receptor subfamily 4 group A member 3 protein-coding 129.667-96 chr7 53205643 53206213 + 0.5 NA Intergenic Intergenic 170295 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 121.833-22 chr16 78635123 78635370 + 0.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 535592 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 132.333-96 chr7 83368610 83368976 + 0.5 NA intron (NM_001178129, intron 16 of 16) intron (NM_001178129, intron 16 of 16) -205909 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 165.833-54 chr7 30782086 30782559 + 0.5 NA intron (NR_037598, intron 5 of 19) MLT2C1|LTR|ERVL 10905 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 164-82 chr9 131884968 131885619 + 0.5 NA intron (NM_001253881, intron 4 of 6) MIRb|SINE|MIR -145349 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 139.667-67 chr3 145935337 145935804 + 0.5 NA Intergenic MER21B|LTR|ERVL 133615 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 166-22 chr14 46026695 46027138 + 0.5 NA Intergenic Intergenic -37243 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 116-18 chr12 34514029 34514386 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 491711 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 125.5-90 chrX 66322093 66322509 + 0.5 NA Intergenic L1MA2|LINE|L1 154551 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 193-17 chr16 71866339 71866923 + 0.5 NA intron (NM_001201554, intron 3 of 6) intron (NM_001201554, intron 3 of 6) 13845 NM_001318239 55565 Hs.744055 NM_017530 ENSG00000102984 ZNF821 - zinc finger protein 821 protein-coding 152.833-41 chr21 45193656 45194056 + 0.5 NA intron (NR_027674, intron 8 of 11) L1ME1|LINE|L1 -40484 NR_135279 114042 Hs.375832 NR_135279 ENSG00000182586 LINC00334 C21orf89|NCRNA00334 long intergenic non-protein coding RNA 334 ncRNA 132.167-61 chr6 164352051 164352407 + 0.5 NA Intergenic L1M5|LINE|L1 469834 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 158.833-54 chr5 125544108 125544762 + 0.5 NA intron (NR_109887, intron 3 of 3) L1MD1|LINE|L1 51174 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 185.333-39 chr3 21737799 21738223 + 0.5 NA intron (NM_024697, intron 1 of 7) intron (NM_024697, intron 1 of 7) 13199 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 170.167-55 chr8 121967023 121967436 + 0.5 NA Intergenic (TGTTT)n|Simple_repeat|Simple_repeat -325789 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 120.5-86 chr8 88889594 88890065 + 0.5 NA Intergenic L2c|LINE|L2 -562346 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 187.667-19 chr14 59575018 59575737 + 0.5 NA intron (NM_001164399, intron 1 of 19) intron (NM_001164399, intron 1 of 19) 1435 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 118.833 chr1 66762111 66762518 + 0.5 NA intron (NM_152665, intron 2 of 4) L1MA5A|LINE|L1 9855 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 149-71 chr7 106280490 106281075 + 0.5 NA intron (NM_005746, intron 1 of 10) AluSc8|SINE|Alu 4201 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 216.333-35 chr5 79528564 79529263 + 0.5 NA Intergenic Intergenic -14779 NM_004272 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 136.167-71 chr7 77924601 77925156 + 0.5 NA TTS (NM_001127360) TTS (NM_001127360) 84748 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 116-87 chr7 49744481 49744826 + 0.5 NA Intergenic L1MCc|LINE|L1 -28985 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 129.333-71 chr5 45687838 45688350 + 0.5 NA intron (NM_021072, intron 1 of 7) intron (NM_021072, intron 1 of 7) 8286 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 142.833-8 chr11 61658288 61658616 + 0.5 NA Intergenic AluSx|SINE|Alu -21939 NM_006133 747 Hs.241564 NM_006133 ENSG00000134780 DAGLA C11orf11|DAGL(ALPHA)|DAGLALPHA|NSDDR diacylglycerol lipase alpha protein-coding 130.167-41 chr21 28367067 28367458 + 0.5 NA Intergenic L1MA3|LINE|L1 -138595 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 126-51 chr20 8794382 8794901 + 0.5 NA intron (NM_015192, intron 31 of 31) intron (NM_015192, intron 31 of 31) -36544 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 168.833-29 chr20 22083962 22084410 + 0.5 NA Intergenic Intergenic 30096 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 124.167-94 chr9 14021428 14021812 + 0.5 NA Intergenic Intergenic 93649 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 143.167-35 chr2 65283785 65284140 + 0.5 NA Intergenic AluSz|SINE|Alu 56267 NM_001005386 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 147.333-51 chr22 40967705 40968213 + 0.5 NA intron (NM_014248, intron 4 of 4) intron (NM_014248, intron 4 of 4) 16581 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 197.5-29 chr2 170721865 170722564 + 0.5 NA intron (NR_110185, intron 5 of 5) intron (NR_110185, intron 5 of 5) 6877 NM_001003845 389058 Hs.368802 NM_001003845 ENSG00000204335 SP5 - Sp5 transcription factor protein-coding 173.833-13 chr11 39718176 39718746 + 0.5 NA Intergenic AluSc8|SINE|Alu 574669 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 135.667-54 chr2 81833222 81833777 + 0.5 NA Intergenic L1MA7|LINE|L1 -366553 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 157.5-67 chr8 62497692 62498043 + 0.5 NA intron (NM_001304533, intron 1 of 6) Penelope1_Vert|LINE|Penelope 249013 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 128.333-5 chr1 161304119 161304571 + 0.5 NA TTS (NM_000530) TTS (NM_000530) 5623 NM_000530 4359 Hs.591486 NM_000530 ENSG00000158887 MPZ CHM|CHN2|CMT1|CMT1B|CMT2I|CMT2J|CMT4E|CMTDI3|CMTDID|DSS|HMSNIB|MPP|P0 myelin protein zero protein-coding 163.833-43 chr4 101169263 101169875 + 0.5 NA intron (NM_001130691, intron 2 of 12) intron (NM_001130691, intron 2 of 12) 71303 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 163.833-30 chr2 97709738 97710148 + 0.5 NA Intergenic Intergenic -3625 NM_001079 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 128.167-42 chr20 9764973 9765341 + 0.5 NA intron (NM_177990, intron 1 of 9) MLT1I|LTR|ERVL-MaLR 73919 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 146.5-73 chr6 43791228 43791624 + 0.5 NA Intergenic Intergenic 19458 NM_001287044 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 154-89 chr9 27821915 27822245 + 0.5 NA Intergenic Intergenic -248214 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 143.5-94 chr9 109338929 109339482 + 0.5 NA Intergenic Intergenic -18241 NM_018424 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 117.667-126 chr8 137335993 137336267 + 0.5 NA Intergenic Intergenic 77458 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 177.667-43 chr2 221487417 221487950 + 0.5 NA intron (NM_001363748, intron 4 of 17) MADE1|DNA|TcMar-Mariner 84621 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 123.333-65 chr20 39622217 39622543 + 0.5 NA Intergenic AluSz6|SINE|Alu -382081 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 141-82 chr7 112817600 112818097 + 0.5 NA Intergenic AluSz|SINE|Alu -27425 NR_109840 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 173.833-15 chr11 135005922 135006461 + 0.5 NA Intergenic Intergenic 20839 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 129-107 chrX 37864472 37864838 + 0.5 NA Intergenic L2b|LINE|L2 -17084 NM_006520 6990 Hs.446392 NM_006520 ENSG00000165169 DYNLT3 RP3|TCTE1L|TCTEX1L dynein light chain Tctex-type 3 protein-coding 144.333-15 chr10 61454223 61454571 + 0.5 NA intron (NR_120643, intron 1 of 5) MER113|DNA|hAT-Charlie -1016 NR_134507 219623 Hs.623955 NM_178505 ENSG00000196932 TMEM26 - transmembrane protein 26 protein-coding 167.167-51 chr6 26071178 26071808 + 0.5 NA Intergenic LTR1A2|LTR|ERV1 -15022 NM_005319 3006 Hs.7644 NM_005319 ENSG00000187837 HIST1H1C H1.2|H1C|H1F2|H1s-1 histone cluster 1 H1 family member c protein-coding 162.5-56 chr5 19909479 19909922 + 0.5 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) -23428 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 140-44 chr21 18227954 18228301 + 0.5 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -16706 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 180.333-55 chr7 95004621 95005172 + 0.5 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 94998 NM_001166162 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 121.5-90 chr6 65059697 65059999 + 0.5 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -241570 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 157.167-17 chr10 124833415 124833957 + 0.5 NA intron (NM_032182, intron 8 of 8) L1ME4a|LINE|L1 31867 NM_032182 23172 Hs.280695 NM_032182 ENSG00000165660 ABRAXAS2 ABRO1|FAM175B|KIAA0157 abraxas 2, BRISC complex subunit protein-coding 119.5-105 chr9 25768736 25769150 + 0.5 NA Intergenic L1PA8|LINE|L1 -11113 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 135.167-28 chr14 73181086 73181576 + 0.5 NA intron (NM_000021, intron 5 of 11) AluSp|SINE|Alu 44824 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 163.5-27 chr17 27316792 27317506 + 0.5 NA Intergenic Intergenic 23035 NM_001348350 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 227.333-33 chr5 38530089 38530586 + 0.5 NA intron (NM_001127671, intron 2 of 19) intron (NM_001127671, intron 2 of 19) 26309 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 123.667-7 chr1 160482514 160482872 + 0.5 NA Intergenic LTR84b|LTR|ERVL 40562 NM_001184715 114836 Hs.492348 NM_052931 ENSG00000162739 SLAMF6 CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000 SLAM family member 6 protein-coding 121.5-63 chr20 31780240 31780631 + 0.5 NA intron (NM_012112, intron 10 of 17) intron (NM_012112, intron 10 of 17) -38940 NM_033118 85366 Hs.86092 NM_033118 ENSG00000101306 MYLK2 KMLC|MLCK|MLCK2|skMLCK myosin light chain kinase 2 protein-coding 121.667-76 chr4 155640641 155641099 + 0.5 NA Intergenic L1MC3|LINE|L1 -25840 NM_001130687 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 192.5-26 chr2 216577053 216577513 + 0.5 NA Intergenic (TTCC)n|Simple_repeat|Simple_repeat 29655 NR_110392 101928232 Hs.694592 NR_110392 LINC01280 - long intergenic non-protein coding RNA 1280 ncRNA 174.333-77 chr9 77073710 77074058 + 0.5 NA Intergenic Intergenic 54229 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 127.5-23 chr14 63931640 63932004 + 0.5 NA intron (NM_015180, intron 2 of 114) intron (NM_015180, intron 2 of 114) 78818 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 133-45 chr2 72726501 72726929 + 0.5 NA intron (NR_135774, intron 5 of 19) L1MEc|LINE|L1 99318 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 123.5-46 chr2 69285842 69286214 + 0.5 NA Intergenic L1ME3F|LINE|L1 101199 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 114.167-45 chr2 77949609 77949893 + 0.5 NA intron (NR_110288, intron 1 of 3) MER57B1|LTR|ERV1 5275 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 244.167-2 chr10 107114317 107115216 + 0.5 NA intron (NM_001206569, intron 1 of 25) L1MA6|LINE|L1 49940 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 249.5-10 chr2 48148049 48148827 + 0.5 NA Intergenic Intergenic -166244 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 140.5-33 chr18 8374921 8375339 + 0.5 NA intron (NM_002845, intron 22 of 30) intron (NM_002845, intron 22 of 30) -8096 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 136.167-41 chr2 132636402 132636845 + 0.5 NA intron (NM_001508, intron 1 of 1) MIR3|SINE|MIR 33582 NM_001321234 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 160.5-9 chr12 17174891 17175392 + 0.5 NA Intergenic L1MEf|LINE|L1 186394 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 155.833-35 chr20 17154814 17155298 + 0.5 NA Intergenic Intergenic -71051 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 174.5-16 chr16 48040669 48041086 + 0.5 NA Intergenic AluSx|SINE|Alu 75188 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 120-95 chr6 39889175 39889474 + 0.5 NA intron (NR_125831, intron 3 of 3) L1ME3|LINE|L1 8056 NR_125831 100505635 Hs.668513 NR_125831 ENSG00000235033 LOC100505635 - uncharacterized LOC100505635 ncRNA 202.5-17 chr22 26944466 26944983 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 41432 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 121.167-52 chr3 3174495 3174892 + 0.5 NA intron (NM_001173482, intron 2 of 10) intron (NM_001173482, intron 2 of 10) 5024 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 149.833-50 chr7 34478511 34478977 + 0.5 NA intron (NR_033665, intron 2 of 3) AluJr|SINE|Alu -179474 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 122.5-15 chr10 128920140 128920462 + 0.5 NA Intergenic Intergenic 7468 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 175.5-52 chr5 136665383 136665921 + 0.5 NA Intergenic Intergenic -300176 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 131.667-79 chr3 86119948 86120415 + 0.5 NA Intergenic MLT2B4|LTR|ERVL -292131 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 172.667-42 chr2 188924535 188925094 + 0.5 NA Intergenic L1M3b|LINE|L1 -49559 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 148.5-36 chr2 51029365 51029707 + 0.5 NA intron (NM_001330093, intron 1 of 22) intron (NM_001330093, intron 1 of 22) 2596 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 122-3 chr1 95106204 95106760 + 0.5 NA intron (NM_001199679, intron 1 of 6) AluSz|SINE|Alu -10873 NM_152487 148534 Hs.483512 NM_152487 ENSG00000152078 TLCD4 TMEM56 TLC domain containing 4 protein-coding 123.833-27 chr2 45176183 45176471 + 0.5 NA intron (NR_033831, intron 4 of 5) intron (NR_033831, intron 4 of 5) 78614 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 171.167-28 chr2 182009514 182010088 + 0.5 NA intron (NM_001261425, intron 2 of 5) L1MA3|LINE|L1 23948 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 178.333-6 chr10 54812782 54813449 + 0.5 NA intron (NM_001354404, intron 4 of 34) L2b|LINE|L2 -11824 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 212-18 chr2 59309449 59309919 + 0.5 NA Intergenic L1MEf|LINE|L1 91976 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 121.667-22 chr14 25491060 25491431 + 0.5 NA Intergenic Intergenic -440948 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 131.667-103 chr5 104236916 104237275 + 0.5 NA Intergenic L2|LINE|L2 -674306 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 175.167 chr1 68332722 68333352 + 0.5 NA Intergenic MIR3|SINE|MIR -100491 NM_001002292 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 129.167-68 chr6 48459921 48460195 + 0.5 NA Intergenic Intergenic -391369 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 117-11 chr1 235942928 235943351 + 0.5 NA Intergenic Intergenic -59426 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 135.333-13 chr11 5207535 5207896 + 0.5 NA Intergenic Intergenic -7015 NM_001004760 283111 Hs.553670 NM_001004760 ENSG00000176742 OR51V1 OR11-36|OR51A12 olfactory receptor family 51 subfamily V member 1 protein-coding 122.167-64 chr7 30618839 30619296 + 0.5 NA intron (NM_002047, intron 10 of 16) intron (NM_002047, intron 10 of 16) 24189 NM_002047 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 121.5-51 chr18 76661396 76661715 + 0.5 NA Intergenic Plat_L3|LINE|CR1 -22544 NR_110784 101927651 Hs.569848 NR_110784 LINC01927 - long intergenic non-protein coding RNA 1927 ncRNA 147.5-22 chr12 25873320 25873708 + 0.5 NA TTS (NR_036188) TTS (NR_036188) 565 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 117.833-79 chr8 36591197 36591626 + 0.5 NA Intergenic Intergenic -192963 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 116-43 chr2 17473458 17473786 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity 44818 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 134.167-78 chr8 33402134 33402536 + 0.5 NA intron (NM_032664, intron 3 of 4) intron (NM_032664, intron 3 of 4) 70811 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 171.5-52 chr5 122044232 122044680 + 0.5 NA Intergenic L1PA15|LINE|L1 32718 NM_001317073 4015 Hs.102267 NM_002317 ENSG00000113083 LOX AAT10 lysyl oxidase protein-coding 136.667-30 chr16 53124351 53124920 + 0.5 NA intron (NM_025134, intron 1 of 38) AluSx|SINE|Alu -6377 NM_001352127 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 193.833-38 chr7 103327187 103327846 + 0.5 NA intron (NM_001362668, intron 4 of 17) intron (NM_001362668, intron 4 of 17) 17251 NM_014377 27000 Hs.558476 NM_014377 ENSG00000105821 DNAJC2 MPHOSPH11|MPP11|ZRF1|ZUO1 DnaJ heat shock protein family (Hsp40) member C2 protein-coding 126.333-17 chr11 44053462 44053853 + 0.5 NA intron (NM_001031854, intron 8 of 13) AluSx1|SINE|Alu 5676 NM_001031854 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 148.667-3 chr1 107715609 107716019 + 0.5 NA intron (NM_006113, intron 15 of 26) intron (NM_006113, intron 15 of 26) -27315 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 255-19 chr5 43502111 43502796 + 0.5 NA exon (NM_198566, exon 6 of 13) exon (NM_198566, exon 6 of 13) 12695 NM_198566 375444 Hs.661641 NM_198566 ENSG00000172244 C5orf34 - chromosome 5 open reading frame 34 protein-coding 129.167-73 chr7 20817003 20817305 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity -10144 NR_026673 222901 Hs.722187 NR_026673 ENSG00000219451 RPL23P8 RPL23_4_790 ribosomal protein L23 pseudogene 8 pseudo 226.833-9 chr16 51899715 51900319 + 0.5 NA Intergenic MIRb|SINE|MIR 137498 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 155.333-90 chr8 61100602 61101011 + 0.5 NA Intergenic L1MB8|LINE|L1 -133058 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 182.667-44 chr4 107975393 107976121 + 0.5 NA Intergenic L1M3|LINE|L1 -13957 NM_001184705 3033 Hs.438289 NM_005327 ENSG00000138796 HADH HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD hydroxyacyl-CoA dehydrogenase protein-coding 122.333-121 chr9 99579145 99579451 + 0.5 NA Intergenic Intergenic -204041 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 144-78 chr8 142721446 142721793 + 0.5 NA intron (NR_038925, intron 1 of 2) PABL_B-int|LTR|ERV1 5354 NR_038925 100288181 Hs.716823 NR_038925 ENSG00000253741 LNCOC1 Lnc-OC1 lncRNA associated with ovarian cancer 1 ncRNA 167.333-65 chr8 89842886 89843464 + 0.5 NA Intergenic Intergenic -58693 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 140.667-43 chr2 131431365 131431902 + 0.5 NA Intergenic Intergenic 13261 NR_002826 401010 Hs.452369 NR_002826 NOC2LP2 - NOC2 like nucleolar associated transcriptional repressor pseudogene 2 pseudo 114.667-90 chr4 26601590 26601967 + 0.5 NA intron (NM_001292054, intron 1 of 17) intron (NM_001292054, intron 1 of 17) 17694 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 207.833-20 chr2 120269520 120270117 + 0.5 NA intron (NM_002881, intron 1 of 4) intron (NM_002881, intron 1 of 4) 16966 NM_001369400 5899 Hs.469820 NM_002881 ENSG00000144118 RALB - RAS like proto-oncogene B protein-coding 185-15 chr14 45344000 45344466 + 0.5 NA Intergenic MIR3|SINE|MIR -91031 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 149-6 chr1 66083997 66084448 + 0.5 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -33504 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 124.5-48 chr3 134008369 134008716 + 0.5 NA intron (NM_005630, intron 1 of 13) intron (NM_005630, intron 1 of 13) 21383 NM_005630 6578 Hs.518270 NM_005630 ENSG00000174640 SLCO2A1 MATR1|OATP2A1|PGT|PHOAR2|SLC21A2 solute carrier organic anion transporter family member 2A1 protein-coding 154.833-6 chr1 179326218 179326633 + 0.5 NA intron (NM_001252512, intron 2 of 14) intron (NM_001252512, intron 2 of 14) 32628 NR_045530 6646 Hs.445588 NM_003101 ENSG00000057252 SOAT1 ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT sterol O-acyltransferase 1 protein-coding 131-53 chr5 39599656 39600180 + 0.5 NA Intergenic Intergenic 79487 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 139.667-65 chr3 112428954 112429457 + 0.5 NA Intergenic MSTD-int|LTR|ERVL-MaLR 70267 NM_181780 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 172.667 chr1 80631769 80632215 + 0.5 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) -9295 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 118.5-87 chr6 162103527 162103925 + 0.5 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -623406 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 128.167-56 chr3 146983817 146984333 + 0.5 NA Intergenic Intergenic 62152 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 125.667-109 chr6 162714896 162715300 + 0.5 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -12034 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 140.833-57 chr7 86083684 86084193 + 0.5 NA Intergenic Intergenic -559971 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 197.833-3 chr1 197347139 197347889 + 0.5 NA intron (NM_001257966, intron 4 of 9) intron (NM_001257966, intron 4 of 9) 79262 NM_201253 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 198.5-13 chr16 49663030 49663650 + 0.5 NA intron (NM_001271620, intron 3 of 7) intron (NM_001271620, intron 3 of 7) 984 NM_001330533 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 165.167-52 chr7 136389645 136390235 + 0.5 NA Intergenic L1ME4a|LINE|L1 -412581 NM_145808 136319 Hs.602015 NM_145808 ENSG00000105887 MTPN GCDP|V-1 myotrophin protein-coding 122-8 chr10 50868577 50868858 + 0.5 NA intron (NM_001198818, intron 1 of 13) intron (NM_001198818, intron 1 of 13) 16910 NM_001370131 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 122.833-78 chr7 5740578 5741060 + 0.5 NA intron (NM_207111, intron 4 of 16) intron (NM_207111, intron 4 of 16) -28909 NR_106934 102466203 NR_106934 ENSG00000283419 MIR6874 hsa-mir-6874 microRNA 6874 ncRNA 171.167-22 chr19 29575213 29575609 + 0.5 NA Intergenic Intergenic -30872 NM_006627 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 113.833-11 chr11 78814543 78815013 + 0.5 NA intron (NM_001098816, intron 12 of 33) intron (NM_001098816, intron 12 of 33) -239914 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 183.833-13 chr14 69448382 69448921 + 0.5 NA intron (NM_001252148, intron 3 of 5) L1MC4|LINE|L1 -36077 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 132.667-90 chr8 37020315 37020697 + 0.5 NA Intergenic Intergenic 236132 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 125.333-22 chr10 98836417 98836852 + 0.5 NA intron (NM_021828, intron 3 of 11) MLT2C1|LTR|ERVL 87934 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 273.833-5 chr19 29097312 29098120 + 0.5 NA Intergenic Intergenic 95161 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 172.833-45 chr5 65872078 65872594 + 0.5 NA Intergenic Intergenic -54218 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 143.167-2 chr1 36037396 36037913 + 0.5 NA intron (NM_177422, intron 12 of 16) intron (NM_177422, intron 12 of 16) -46440 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 125.333 chr1 7115804 7116219 + 0.5 NA intron (NM_001349608, intron 3 of 21) MLT2B4|LTR|ERVL 273743 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 155.5-35 chr3 71746546 71747060 + 0.5 NA intron (NM_173359, intron 1 of 7) L1MB7|LINE|L1 6788 NM_001282886 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 114.667-52 chr2 72627156 72627448 + 0.5 NA intron (NR_135774, intron 6 of 19) intron (NR_135774, intron 6 of 19) 198731 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 115.833-15 chr12 121291284 121291735 + 0.5 NA intron (NM_172215, intron 1 of 15) L1MB5|LINE|L1 5200 NM_001270485 10645 Hs.297343 NM_006549 ENSG00000110931 CAMKK2 CAMKK|CAMKKB calcium/calmodulin dependent protein kinase kinase 2 protein-coding 165.167-60 chr8 128964229 128964584 + 0.5 NA intron (NR_145483, intron 2 of 3) intron (NR_145483, intron 2 of 3) 1595 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 142-3 chr1 63017557 63017958 + 0.5 NA Intergenic Intergenic -5286 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 134.333-80 chr4 14883187 14883524 + 0.5 NA intron (NR_126435, intron 1 of 6) L3|LINE|CR1 4814 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 148.667-71 chr7 29368873 29369334 + 0.5 NA intron (NM_001293072, intron 3 of 12) intron (NM_001293072, intron 3 of 12) -110609 NM_001293079 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 128-19 chr11 131284166 131284470 + 0.5 NA Intergenic Intergenic -86297 NM_001352003 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 150.333-56 chr2 66798684 66799266 + 0.5 NA Intergenic Intergenic -95748 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 118-94 chr5 59103083 59103574 + 0.5 NA intron (NM_001364603, intron 5 of 15) intron (NM_001364603, intron 5 of 15) -63852 NM_001197222 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 135-2 chr1 51977974 51978417 + 0.5 NA intron (NM_002867, intron 1 of 4) L2c|LINE|L2 12505 NM_002867 5865 Hs.123072 NM_002867 ENSG00000169213 RAB3B - RAB3B, member RAS oncogene family protein-coding 128-82 chr7 3834051 3834630 + 0.5 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -295345 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 131.333-3 chr1 86711753 86712130 + 0.5 NA intron (NM_001206653, intron 1 of 7) intron (NM_001206653, intron 1 of 7) 7365 NM_001206652 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 201.5-22 chr20 264928 265350 + 0.5 NA Intergenic AluSx1|SINE|Alu 7415 NM_207469 400830 Hs.516819 NM_207469 ENSG00000186458 DEFB132 BD-32|DEFB-32|DEFB32|HEL-75|KFLL827|UNQ827 defensin beta 132 protein-coding 138.5-46 chr21 32317593 32318088 + 0.5 NA exon (NM_014825, exon 37 of 39) exon (NM_014825, exon 37 of 39) 26027 NM_206898 56246 Hs.584940 NM_178817 ENSG00000170262 MRAP B27|C21orf61|FALP|FGD2|GCCD2 melanocortin 2 receptor accessory protein protein-coding 170.5-25 chr19 27781122 27781685 + 0.5 NA Intergenic AluJo|SINE|Alu -12028 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 137.333-112 chr9 102024245 102024604 + 0.5 NA Intergenic L1PA11|LINE|L1 -285844 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 189.167-13 chr12 13875805 13876523 + 0.5 NA intron (NM_000834, intron 1 of 12) MIRb|SINE|MIR 104192 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 147-87 chr8 118092254 118092698 + 0.5 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 19343 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 201.167-12 chr2 46968256 46968762 + 0.5 NA intron (NM_001288951, intron 3 of 20) intron (NM_001288951, intron 3 of 20) -26654 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 138-8 chr1 225717988 225718419 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -59610 NM_003133 6726 Hs.511425 NM_003133 ENSG00000143742 SRP9 ALURBP signal recognition particle 9 protein-coding 217.5-10 chr14 65456909 65457522 + 0.5 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) -13887 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 143.667-82 chr4 133446508 133446869 + 0.5 NA Intergenic L1ME2z|LINE|L1 297394 NM_020815 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 125.333-79 chr3 99612444 99612867 + 0.5 NA Intergenic HAL1|LINE|L1 -25939 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 123-50 chr2 180818932 180819244 + 0.5 NA intron (NR_104324, intron 3 of 4) AluSp|SINE|Alu 126984 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 144.5-56 chr3 61106844 61107256 + 0.5 NA intron (NR_148922, intron 2 of 3) L1MA8|LINE|L1 144402 NM_001320900 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 125.833-25 chr15 70528219 70528640 + 0.5 NA Intergenic Intergenic -22501 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 198-18 chr14 83717345 83717958 + 0.5 NA Intergenic Intergenic 1075019 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 119.667-14 chr11 93575171 93575590 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -31989 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 175.333-34 chr22 47981544 47982138 + 0.5 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -292523 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 143.333-16 chr12 116444267 116444598 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -16114 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 153.833-61 chr8 102221204 102221678 + 0.5 NA intron (NM_001172477, intron 5 of 8) intron (NM_001172477, intron 5 of 8) 17390 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 115.833-3 chr1 170751934 170752203 + 0.5 NA Intergenic LTR86C|LTR|ERVL 87937 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 174.833-34 chr4 45942734 45943262 + 0.5 NA Intergenic MER67C|LTR|ERV1 181056 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 139.167-59 chr6 42878944 42879427 + 0.5 NA promoter-TSS (NR_134562) promoter-TSS (NR_134562) -431 NR_134562 285855 Hs.520133 NM_198486 ENSG00000146223 RPL7L1 dJ475N16.4 ribosomal protein L7 like 1 protein-coding 165.167-50 chr6 130084214 130084706 + 0.5 NA intron (NM_001007102, intron 14 of 21) intron (NM_001007102, intron 14 of 21) 64816 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 139.333-80 chr5 136977310 136977640 + 0.5 NA 3' UTR (NM_004598, exon 11 of 11) 3' UTR (NM_004598, exon 11 of 11) -150722 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 144.667-3 chr1 114394327 114394671 + 0.5 NA 3' UTR (NM_033020, exon 19 of 19) 3' UTR (NM_033020, exon 19 of 19) 116704 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 120.833-13 chr15 25387362 25387742 + 0.5 NA intron (NM_001354546, intron 1 of 9) L1MC1|LINE|L1 50677 NM_001354505 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 143.833-34 chr4 171238778 171239158 + 0.5 NA Intergenic Intergenic 52784 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 201.167-26 chr5 130084638 130085222 + 0.5 NA intron (NM_175856, intron 2 of 2) MER4D1|LTR|ERV1 180465 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 197-47 chr7 114543272 114543929 + 0.5 NA intron (NR_033767, intron 4 of 17) intron (NR_033767, intron 4 of 17) -109745 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 128.833-83 chr7 80154626 80154962 + 0.5 NA intron (NM_001256414, intron 1 of 7) intron (NM_001256414, intron 1 of 7) 19010 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 126.333 chr1 32622279 32622604 + 0.5 NA intron (NM_001366266, intron 4 of 4) L1PA15|LINE|L1 28109 NM_001366278 339487 Hs.655921 NM_178547 ENSG00000176261 ZBTB8OS ARCH|ARCH2 zinc finger and BTB domain containing 8 opposite strand protein-coding 127.333-54 chr2 120482407 120482842 + 0.5 NA Intergenic Intergenic -16275 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 123.5-53 chr21 29979571 29980033 + 0.5 NA Intergenic Intergenic -39750 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 114.5-58 chr20 17480270 17480576 + 0.5 NA intron (NM_002594, intron 11 of 11) AluY|SINE|Alu 50956 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 120-113 chr9 29060454 29060966 + 0.5 NA intron (NM_001354574, intron 1 of 5) L1MEf|LINE|L1 151589 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 134-9 chr1 115576851 115577222 + 0.5 NA Intergenic Intergenic -64934 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 117-21 chr11 80886821 80887198 + 0.5 NA Intergenic Intergenic -124206 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 113.833-53 chr3 24837267 24837539 + 0.5 NA intron (NM_001290216, intron 1 of 10) intron (NM_001290216, intron 1 of 10) 8080 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 229.167-31 chr6 66518565 66519354 + 0.5 NA Intergenic Intergenic 731080 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 132.5-94 chr7 159076849 159077140 + 0.5 NA intron (NR_130758, intron 4 of 12) MER31-int|LTR|ERV1 20210 NM_001308259 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 119.667-21 chr14 48962928 48963231 + 0.5 NA Intergenic Intergenic 623301 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 213.5-38 chr9 30180611 30181363 + 0.5 NA Intergenic (TAATAA)n|Simple_repeat|Simple_repeat 227467 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 115.333-48 chr2 21766664 21766992 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -56176 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 113.833-36 chr2 12676564 12677029 + 0.5 NA Intergenic Intergenic -40076 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 118-30 chr13 97361072 97361451 + 0.5 NA intron (NM_207304, intron 6 of 6) intron (NM_207304, intron 6 of 6) -72908 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 129.833-74 chr8 104454072 104454418 + 0.5 NA intron (NM_001385, intron 1 of 9) AluSq2|SINE|Alu 12810 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 121-17 chr11 130550320 130550636 + 0.5 NA Intergenic Intergenic 101504 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 170.833-43 chr6 75690395 75690794 + 0.5 NA intron (NM_001100409, intron 15 of 22) L1MB2|LINE|L1 -58645 NM_001368138 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 126.333-71 chr22 31244624 31244952 + 0.5 NA intron (NM_005569, intron 2 of 15) MIRb|SINE|MIR -3596 NM_001031801 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 188.167-15 chr18 59510942 59511359 + 0.5 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) -151885 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 125.333-71 chr21 16942664 16943039 + 0.5 NA Intergenic L1MA4|LINE|L1 352614 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 181.5-46 chr5 39956362 39956841 + 0.5 NA Intergenic Intergenic -95690 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 174.833-49 chr8 92246285 92246979 + 0.5 NA Intergenic Intergenic -143247 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 115.667-99 chr5 79254778 79255187 + 0.5 NA intron (NM_152405, intron 1 of 10) L1M1|LINE|L1 18851 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 178.5-15 chr11 46140860 46141363 + 0.5 NA Intergenic L1ME4a|LINE|L1 -20126 NM_001352031 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 211.333-26 chr2 41323072 41323712 + 0.5 NA Intergenic L1ME2z|LINE|L1 -554163 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 120.667-119 chr8 142817148 142817561 + 0.5 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -17447 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 119.833-69 chr5 35438847 35439249 + 0.5 NA Intergenic LTR8B|LTR|ERV1 -178815 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 133.833-52 chr4 20503569 20503948 + 0.5 NA intron (NM_001289135, intron 9 of 35) intron (NM_001289135, intron 9 of 35) -24517 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 136.5-14 chr10 76503240 76503596 + 0.5 NA intron (NM_001305581, intron 6 of 6) L1PA16|LINE|L1 -384626 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 155.667-22 chr11 134239001 134239623 + 0.5 NA intron (NM_052875, intron 2 of 5) L2c|LINE|L2 14040 NM_014174 29087 Hs.13645 NM_014174 ENSG00000151500 THYN1 HSPC144|MDS012|MY105|THY28|THY28KD thymocyte nuclear protein 1 protein-coding 114.5-20 chr11 119587152 119587473 + 0.5 NA Intergenic AluJr|SINE|Alu 141888 NM_203285 5818 Hs.334846 NM_002855 ENSG00000110400 NECTIN1 CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1 nectin cell adhesion molecule 1 protein-coding 116-25 chr14 65657059 65657376 + 0.5 NA intron (NM_004480, intron 5 of 9) L1MA3|LINE|L1 186115 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 114.167-46 chr2 81880187 81880578 + 0.5 NA Intergenic Intergenic -413436 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 139.5-16 chr12 44187384 44187878 + 0.5 NA intron (NM_001286213, intron 3 of 6) intron (NM_001286213, intron 3 of 6) 351550 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 116.667-44 chr16 78221907 78222181 + 0.5 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 122390 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 141.333-71 chr4 177923158 177923606 + 0.5 NA intron (NR_028342, intron 2 of 5) ERVL-B4-int|LTR|ERVL -15446 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 174.5-11 chr14 56638765 56639176 + 0.5 NA intron (NM_017799, intron 15 of 15) intron (NM_017799, intron 15 of 15) 59172 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 177.5-34 chr19 27917720 27918116 + 0.5 NA intron (NR_146735, intron 4 of 7) intron (NR_146735, intron 4 of 7) -123978 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 123.5-80 chr7 135274654 135274982 + 0.5 NA Intergenic Intergenic 42839 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 125.833-87 chr8 79319735 79320160 + 0.5 NA Intergenic Intergenic -12241 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 119.333-9 chr1 233150218 233150619 + 0.5 NA intron (NM_014801, intron 19 of 33) intron (NM_014801, intron 19 of 33) 145307 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 158.667-3 chr1 114490614 114491329 + 0.5 NA intron (NM_015906, intron 1 of 19) L1MB8|LINE|L1 20232 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 135.333-74 chr7 8796299 8796691 + 0.5 NA Intergenic L1ME4c|LINE|L1 362886 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 158.667-59 chr3 88685909 88686328 + 0.5 NA Intergenic Intergenic 347662 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 164.333-58 chr5 78276072 78276643 + 0.5 NA intron (NM_003664, intron 1 of 26) AluJr|SINE|Alu 18341 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 113.833-21 chr14 88462403 88462721 + 0.5 NA Intergenic Intergenic 76905 NM_018418 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 165.667-63 chr6 155963470 155963915 + 0.5 NA Intergenic Intergenic 16895 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 174.667-40 chr3 16427540 16427968 + 0.5 NA intron (NM_015150, intron 3 of 9) intron (NM_015150, intron 3 of 9) 85945 NM_015150 23180 Hs.98910 NM_015150 ENSG00000131378 RFTN1 MIG2|PIB10|PIG9|RAFTLIN raftlin, lipid raft linker 1 protein-coding 214.833-19 chr5 138765478 138766236 + 0.5 NA intron (NM_001323982, intron 2 of 18) AluSc|SINE|Alu -11933 NR_134244 105379194 Hs.445981 NR_134244 ENSG00000253404 LOC105379194 - uncharacterized LOC105379194 ncRNA 125.833-31 chr18 427371 427924 + 0.5 NA intron (NM_130386, intron 2 of 9) L2c|LINE|L2 73054 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 148.333-17 chr11 81046958 81047482 + 0.5 NA Intergenic MIRb|SINE|MIR -284417 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 136.333-8 chr10 17085086 17085398 + 0.5 NA intron (NM_001081, intron 16 of 66) intron (NM_001081, intron 16 of 66) 44575 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 118-24 chr12 46605800 46606283 + 0.5 NA intron (NR_125377, intron 3 of 3) intron (NR_125377, intron 3 of 3) 219956 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 150.167-9 chr11 121402958 121403534 + 0.5 NA Intergenic LTR33A|LTR|ERVL -49068 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 120.167-85 chrX 45411732 45412209 + 0.5 NA Intergenic L1MA1|LINE|L1 -93418 NR_104645 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 129.5-19 chr12 16188856 16189400 + 0.5 NA 3' UTR (NM_001170798, exon 9 of 9) 3' UTR (NM_001170798, exon 9 of 9) 88557 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 214.833-11 chr16 22390195 22390693 + 0.5 NA intron (NR_136333, intron 1 of 3) AluSx1|SINE|Alu 4675 NR_136333 105371130 Hs.639607 NR_136333 MFSD13B - major facilitator superfamily domain containing 13B (pseudogene) pseudo 123.5-66 chr5 134068562 134068928 + 0.5 NA Intergenic L1MEd|LINE|L1 -45936 NM_001346425 6932 Hs.573153 NM_003202 ENSG00000081059 TCF7 TCF-1 transcription factor 7 protein-coding 122.5-87 chr7 11612902 11613185 + 0.5 NA intron (NM_015204, intron 2 of 26) ERVL-E-int|LTR|ERVL 219155 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 114.333-96 chr4 89908933 89909445 + 0.5 NA intron (NM_001371403, intron 2 of 8) intron (NM_001371403, intron 2 of 8) 14335 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 129-61 chr3 178920777 178921158 + 0.5 NA Intergenic L1PB4|LINE|L1 -60562 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 164.667-21 chr12 55499546 55499963 + 0.5 NA Intergenic Intergenic 7376 NM_001005519 403284 Hs.626886 NM_001005519 ENSG00000205327 OR6C68 - olfactory receptor family 6 subfamily C member 68 protein-coding 225.5-3 chr1 216348960 216349734 + 0.5 NA intron (NM_206933, intron 4 of 71) MER41B|LTR|ERV1 74049 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 145.5-67 chr5 121088340 121088744 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR -234008 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 130.5-23 chr14 78426046 78426430 + 0.5 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 22519 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 139.167-2 chr1 45261717 45262213 + 0.5 NA Intergenic Intergenic -41945 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 135.167-68 chr3 191374647 191375001 + 0.5 NA intron (NM_174908, intron 5 of 10) intron (NM_174908, intron 5 of 10) -44288 NM_198152 257313 Hs.518492 NM_198152 ENSG00000188958 UTS2B U2B|URP|UTS2D urotensin 2B protein-coding 119.5-39 chr17 54139762 54140102 + 0.5 NA Intergenic L1MC4|LINE|L1 317005 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 115.333-59 chr20 8637521 8637759 + 0.5 NA intron (NM_182734, intron 4 of 32) intron (NM_182734, intron 4 of 32) -193545 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 184.333-29 chr2 103859547 103860207 + 0.5 NA Intergenic Intergenic 548455 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 151.667-35 chr2 18424258 18424800 + 0.5 NA Intergenic Intergenic 136124 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 125.5-24 chr14 80746576 80747158 + 0.5 NA intron (NM_152446, intron 18 of 24) L1MB7|LINE|L1 194871 NR_157142 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 135-86 chr6 137328712 137329102 + 0.5 NA Intergenic Intergenic -109477 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 140.667-65 chr5 12338012 12338461 + 0.5 NA Intergenic Intergenic -236621 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 119.5-31 chr14 56210298 56210577 + 0.5 NA intron (NM_021255, intron 2 of 5) HAL1|LINE|L1 92026 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 113.5-47 chr2 60800992 60801308 + 0.5 NA 3' UTR (NM_022894, exon 22 of 22) 3' UTR (NM_022894, exon 22 of 22) 44882 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 147-84 chr8 86473095 86473600 + 0.5 NA 3' UTR (NM_016033, exon 10 of 10) 3' UTR (NM_016033, exon 10 of 10) 35339 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 130.333-21 chr12 4047836 4048267 + 0.5 NA Intergenic AluSc8|SINE|Alu -174603 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 157.167-34 chr2 215582069 215582423 + 0.5 NA Intergenic L1MC5a|LINE|L1 128539 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 164 chr1 70332389 70332826 + 0.5 NA intron (NM_030816, intron 2 of 12) AluSz6|SINE|Alu 22115 NM_030816 81573 Hs.744989 NM_030816 ENSG00000118454 ANKRD13C dJ677H15.3 ankyrin repeat domain 13C protein-coding 161.333-79 chrX 69349336 69349803 + 0.5 NA Intergenic Intergenic -155666 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 214.333 chr1 21167260 21167810 + 0.5 NA intron (NM_001198803, intron 1 of 12) AluSx1|SINE|Alu 504 NM_001198803 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 120.667-54 chr2 35421234 35421610 + 0.5 NA Intergenic Intergenic -49983 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 148.167-29 chr17 40758858 40759354 + 0.5 NA Intergenic L1MA8|LINE|L1 -3775 NM_181534 147183 Hs.55412 NM_181534 ENSG00000204897 KRT25 ARWH3|KRT24IRS1|KRT25A keratin 25 protein-coding 200.167-24 chr2 57675568 57676271 + 0.5 NA Intergenic Intergenic -231732 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 113.833-18 chr14 59501506 59501868 + 0.5 NA intron (NM_016475, intron 6 of 6) intron (NM_016475, intron 6 of 6) 17170 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 113.5-46 chr2 39064032 39064498 + 0.5 NA intron (NM_005633, intron 2 of 22) L1MA8|LINE|L1 56198 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 155-63 chr5 35869697 35870320 + 0.5 NA intron (NR_120485, intron 3 of 5) intron (NR_120485, intron 3 of 5) 13117 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 133.833-80 chr9 90836739 90837059 + 0.5 NA intron (NM_001174167, intron 1 of 13) Tigger2b_Pri|DNA|TcMar-Tigger 9479 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 156.5-31 chr14 49436902 49437509 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 149175 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 157.167-11 chr1 247321015 247321371 + 0.5 NA intron (NM_001329733, intron 6 of 9) L1MB2|LINE|L1 10674 NM_032752 84838 Hs.168677 NM_032752 ENSG00000162714 ZNF496 NIZP1|ZFP496|ZKSCAN17|ZSCAN49 zinc finger protein 496 protein-coding 124.167-61 chr4 52749616 52750022 + 0.5 NA intron (NM_001242690, intron 2 of 2) MER34-int|LTR|ERV1 1606 NM_001242690 100288413 Hs.363087 NM_024534 ENSG00000226887 ERVMER34-1 HEMO|envMER34 endogenous retrovirus group MER34 member 1, envelope protein-coding 140.333-35 chr2 73144123 73144440 + 0.5 NA Intergenic Intergenic -31333 NM_015470 26056 Hs.24557 NM_015470 ENSG00000135631 RAB11FIP5 GAF1|RIP11|pp75 RAB11 family interacting protein 5 protein-coding 198.833-26 chr7 83870365 83870993 + 0.5 NA Intergenic Intergenic -221540 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 120.833-42 chr3 26939348 26939756 + 0.5 NA Intergenic L1ME1|LINE|L1 244995 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 149.667-31 chr17 59052082 59052565 + 0.5 NA intron (NR_148346, intron 13 of 23) intron (NR_148346, intron 13 of 23) 54557 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 161.5-39 chr5 168783343 168783809 + 0.5 NA intron (NM_003062, intron 12 of 35) intron (NM_003062, intron 12 of 35) -15321 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 114.667-116 chr7 8248941 8249469 + 0.5 NA intron (NM_001350826, intron 1 of 14) intron (NM_001350826, intron 1 of 14) 12847 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 166.333-4 chr1 180013077 180013807 + 0.5 NA intron (NM_014810, intron 9 of 37) intron (NM_014810, intron 9 of 37) 58632 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 192.833-25 chr3 44282681 44283165 + 0.5 NA intron (NM_001145030, intron 9 of 19) L3|LINE|CR1 41037 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 157.667-47 chr3 47094527 47095047 + 0.5 NA intron (NR_146158, intron 9 of 21) intron (NR_146158, intron 9 of 21) 69190 NM_014159 29072 Hs.517941 NM_012271 ENSG00000181555 SETD2 HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|SET2|p231HBP SET domain containing 2, histone lysine methyltransferase protein-coding 125.333-7 chr1 162674945 162675451 + 0.5 NA intron (NM_006182, intron 2 of 17) intron (NM_006182, intron 2 of 17) 42734 NM_006182 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 141.333-16 chr11 81721580 81721910 + 0.5 NA Intergenic L1MA3|LINE|L1 169091 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 144.333-95 chr9 74700210 74700632 + 0.5 NA Intergenic Intergenic 84887 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 129.833-51 chr5 10560071 10560422 + 0.5 NA Intergenic Intergenic -3824 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 115.167-44 chr16 68326845 68327162 + 0.5 NA intron (NR_147058, intron 5 of 18) intron (NR_147058, intron 5 of 18) 15889 NM_001290018 54496 Hs.640229 NM_019023 ENSG00000132600 PRMT7 SBIDDS protein arginine methyltransferase 7 protein-coding 161.667-30 chr14 24347964 24348357 + 0.5 NA Intergenic AluSz|SINE|Alu -8169 NM_006871 11035 Hs.268551 NM_006871 ENSG00000129465 RIPK3 RIP3 receptor interacting serine/threonine kinase 3 protein-coding 141.5-35 chr17 60523367 60523703 + 0.5 NA intron (NM_006380, intron 1 of 12) intron (NM_006380, intron 1 of 12) 2705 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 120.5-79 chr7 7522955 7523333 + 0.5 NA intron (NM_001037763, intron 4 of 34) Kanga1|DNA|TcMar-Tc2 12729 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 147.167-8 chr1 209782543 209782916 + 0.5 NA TTS (NM_025228) TTS (NM_025228) 1830 NM_152485 148304 Hs.497642 NM_152485 ENSG00000162757 C1orf74 URLC4 chromosome 1 open reading frame 74 protein-coding 132.5-92 chr7 107239118 107239430 + 0.5 NA intron (NM_181733, intron 16 of 20) L1MA7|LINE|L1 70271 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 114.5-66 chr3 71245279 71245757 + 0.5 NA promoter-TSS (NM_001244814) promoter-TSS (NM_001244814) -441 NM_001244814 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 124.167-35 chr17 54584425 54584933 + 0.5 NA Intergenic L1PREC2|LINE|L1 -316012 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 118.333-65 chr21 31595433 31595841 + 0.5 NA Intergenic AluSx|SINE|Alu 36404 NM_001321023 150051 Hs.708976 NM_001321023 LOC150051 - uncharacterized LOC150051 protein-coding 124.167-10 chr10 87511978 87512290 + 0.5 NA intron (NM_001178117, intron 2 of 2) intron (NM_001178117, intron 2 of 2) 4301 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 119-82 chr5 153141486 153141810 + 0.5 NA Intergenic AluJb|SINE|Alu -169299 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 130-100 chr8 111528396 111528939 + 0.5 NA Intergenic MSTB|LTR|ERVL-MaLR 152028 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 120-22 chr12 13915676 13916150 + 0.5 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 64443 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 113.667-12 chr10 6027847 6028218 + 0.5 NA intron (NM_000417, intron 1 of 7) L1MEc|LINE|L1 34335 NM_001308243 3559 Hs.231367 NM_000417 ENSG00000134460 IL2RA CD25|IDDM10|IL2R|IMD41|TCGFR|p55 interleukin 2 receptor subunit alpha protein-coding 134.667-91 chr6 15687997 15688340 + 0.5 NA Intergenic AluYc|SINE|Alu -25110 NM_001271668 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 181.833-38 chr4 173379559 173380048 + 0.5 NA Intergenic L1MB5|LINE|L1 8849 NM_003864 8819 Hs.591715 NM_003864 ENSG00000164105 SAP30 - Sin3A associated protein 30 protein-coding 179.833-7 chr10 61587098 61587540 + 0.5 NA Intergenic Intergenic -75610 NM_001366905 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 119.667-77 chr5 46168910 46169225 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -472687 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 154.667-48 chr3 148650835 148651248 + 0.5 NA Intergenic Intergenic -46830 NM_000685 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 127.833-57 chr5 16783569 16783847 + 0.5 NA intron (NM_012334, intron 4 of 40) intron (NM_012334, intron 4 of 40) 152580 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 178-23 chr19 28267899 28268336 + 0.5 NA Intergenic L1MEc|LINE|L1 -338571 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 132.333-110 chr8 127479425 127479812 + 0.5 NA intron (NR_024393, intron 3 of 4) intron (NR_024393, intron 3 of 4) 2521 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 159.333 chr1 23989625 23990281 + 0.5 NA Intergenic L1PB1|LINE|L1 -9490 NR_034035 10772 Hs.3530 NM_006625 ENSG00000188529 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine and arginine rich splicing factor 10 protein-coding 130.333-13 chr10 91144058 91144529 + 0.5 NA Intergenic Intergenic 8787 NR_002779 119369 Hs.441287 NR_002779 NUDT9P1 C10orf98|bA56M3.1 nudix hydrolase 9 pseudogene 1 pseudo 123.167-22 chr12 50990456 50990758 + 0.5 NA intron (NR_033422, intron 15 of 17) AluJo|SINE|Alu 18608 NM_001174130 4891 Hs.505545 NM_000617 ENSG00000110911 SLC11A2 AHMIO1|DCT1|DMT1|NRAMP2 solute carrier family 11 member 2 protein-coding 126.333-64 chr2 221619754 221620006 + 0.5 NA Intergenic Intergenic -45678 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 123.333-120 chrX 93502412 93502954 + 0.5 NA Intergenic L1PREC2|LINE|L1 170895 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 119-79 chr4 181126216 181126569 + 0.5 NA intron (NR_033918, intron 2 of 2) intron (NR_033918, intron 2 of 2) 32757 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 148.5-15 chr11 127063974 127064403 + 0.5 NA Intergenic Intergenic -2814 NR_120578 101929473 Hs.737523 NR_120578 ENSG00000255087 LOC101929473 - uncharacterized LOC101929473 ncRNA 135.833-25 chr17 63604610 63605074 + 0.5 NA intron (NM_016360, intron 2 of 4) AluSz|SINE|Alu 3947 NM_016360 51204 Hs.174134 NM_016360 ENSG00000136463 TACO1 CCDC44 translational activator of cytochrome c oxidase I protein-coding 140.167-67 chr7 28206923 28207308 + 0.5 NA intron (NR_034097, intron 2 of 3) L1MEg|LINE|L1 -26320 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 125.833-9 chr10 59458461 59458798 + 0.5 NA Intergenic L1MB8|LINE|L1 -95448 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 152.667-5 chr1 114101851 114102222 + 0.5 NA intron (NM_001366223, intron 4 of 7) intron (NM_001366223, intron 4 of 7) 50404 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 143.333-71 chr5 106406223 106406586 + 0.5 NA Intergenic Intergenic 604610 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 125.667-41 chr16 61515971 61516448 + 0.5 NA Intergenic Intergenic -460443 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 168.5-20 chr16 14129669 14130205 + 0.5 NA intron (NM_001365418, intron 3 of 5) AluSz6|SINE|Alu -56749 NM_001365415 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 138.667-70 chr4 99613703 99614179 + 0.5 NA intron (NM_001300785, intron 15 of 17) intron (NM_001300785, intron 15 of 17) 40738 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 151.5-54 chr4 53571552 53571974 + 0.5 NA intron (NM_001126328, intron 2 of 10) AluJr|SINE|Alu -13494 NM_032622 84708 Hs.518760 NM_032622 ENSG00000072201 LNX1 LNX|MPDZ|PDZRN2 ligand of numb-protein X 1 protein-coding 205.333-27 chr2 156642209 156642620 + 0.5 NA Intergenic L1MA6|LINE|L1 206035 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 116.833-62 chr7 114967054 114967463 + 0.5 NA intron (NM_001166345, intron 3 of 4) MLT1L|LTR|ERVL-MaLR 45104 NM_001166345 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 162.167-16 chr14 73414192 73414558 + 0.5 NA intron (NM_001005743, intron 1 of 12) intron (NM_001005743, intron 1 of 12) 44205 NM_001005745 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 141.167-71 chr7 145165902 145166490 + 0.5 NA Intergenic Intergenic -330143 NM_001042482 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 134-10 chr1 200494599 200495194 + 0.5 NA Intergenic Intergenic -84860 NM_012482 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 118.333-8 chr1 171038340 171038811 + 0.5 NA intron (NM_001163629, intron 20 of 21) intron (NM_001163629, intron 20 of 21) -52330 NM_001319173 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 149.167-46 chr4 172900443 172900792 + 0.5 NA intron (NM_001034845, intron 8 of 12) intron (NM_001034845, intron 8 of 12) -173739 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 119-17 chr10 94643115 94643519 + 0.5 NA Intergenic AluJo|SINE|Alu -40412 NM_000772 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 172.667-10 chr10 67712056 67712555 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -16110 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 127.167-89 chr8 120539011 120539575 + 0.5 NA intron (NM_021021, intron 6 of 6) MIRc|SINE|MIR 93874 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 178.667-9 chr11 112953628 112954173 + 0.5 NA Intergenic Intergenic -7520 NM_181351 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 136.833-20 chr14 41412140 41412544 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -194514 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 114.833-44 chr3 96518591 96519062 + 0.5 NA Intergenic L1MA1|LINE|L1 158862 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 173.167-41 chr6 56803930 56804435 + 0.5 NA intron (NM_001144770, intron 2 of 94) intron (NM_001144770, intron 2 of 94) 39483 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 118.833-33 chr19 53687521 53687841 + 0.5 NA promoter-TSS (NR_031573) promoter-TSS (NR_031573) -800 NR_031573 100302265 NR_031573 ENSG00000221421 MIR1283-1 MIRN1283-1|hsa-mir-1283-1|mir-1283-1 microRNA 1283-1 ncRNA 165-44 chr5 34733646 34734123 + 0.5 NA intron (NM_001145525, intron 4 of 19) intron (NM_001145525, intron 4 of 19) 46325 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 141.667-5 chr1 164079602 164079906 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL -479606 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 114.167-95 chr8 117431914 117432422 + 0.5 NA Intergenic Intergenic -88545 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 142.5-4 chr1 183239387 183239690 + 0.5 NA exon (NM_018891, exon 20 of 22) exon (NM_018891, exon 20 of 22) 53274 NM_018891 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 120.333-113 chr8 37412305 37412644 + 0.5 NA intron (NR_121620, intron 6 of 6) intron (NR_121620, intron 6 of 6) 81439 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 140.167-44 chr3 110279278 110279823 + 0.5 NA Intergenic L1MEg|LINE|L1 676722 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 114.333-62 chr2 25075341 25075655 + 0.5 NA intron (NM_001319099, intron 1 of 22) intron (NM_001319099, intron 1 of 22) 33035 NM_001319099 22979 Hs.4892 NM_014971 ENSG00000084710 EFR3B KIAA0953 EFR3 homolog B protein-coding 276.833-7 chr6 75257372 75258129 + 0.5 NA intron (NM_001143958, intron 5 of 5) intron (NM_001143958, intron 5 of 5) -7452 NM_001366292 1347 Hs.70312 NM_001865 ENSG00000112695 COX7A2 COX7AL|COX7AL1|COXVIIAL|COXVIIa-L|VIIAL cytochrome c oxidase subunit 7A2 protein-coding 130.833-17 chr14 70071633 70071971 + 0.5 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) 8415 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 172.667-56 chr3 165105094 165105544 + 0.5 NA Intergenic L1M5|LINE|L1 -26823 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 163.333-78 chr8 119050305 119050979 + 0.5 NA intron (NM_001324095, intron 3 of 7) intron (NM_001324095, intron 3 of 7) -16605 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 131-25 chr17 70889985 70890573 + 0.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 311900 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 126.667-64 chr4 41979393 41979731 + 0.5 NA Intergenic Intergenic -2194 NM_001029955 285429 Hs.213307 NM_001029955 ENSG00000182308 DCAF4L1 WDR21B DDB1 and CUL4 associated factor 4 like 1 protein-coding 162.667-12 chr12 16062016 16062462 + 0.5 NA Intergenic MIR|SINE|MIR 150907 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 123-75 chr5 56599887 56600191 + 0.5 NA intron (NR_161255, intron 1 of 5) intron (NR_161255, intron 1 of 5) 6217 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 156.667-43 chr18 3870689 3871260 + 0.5 NA intron (NM_001242761, intron 4 of 11) intron (NM_001242761, intron 4 of 11) 3328 NM_001242764 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 153.667-26 chr15 52980280 52980798 + 0.5 NA Intergenic Intergenic -135826 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 188.167-33 chr4 44834686 44835258 + 0.5 NA Intergenic (ATATACAA)n|Simple_repeat|Simple_repeat -108338 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 134-108 chr8 133086506 133086784 + 0.5 NA intron (NM_001045556, intron 1 of 8) L1ME3G|LINE|L1 15957 NM_001045556 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 136.333-100 chr8 129289347 129289740 + 0.5 NA Intergenic MER2|DNA|TcMar-Tigger -48303 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 186.167-29 chr3 193161350 193162040 + 0.5 NA Intergenic Intergenic -79527 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 161.5-48 chr8 3522728 3523310 + 0.5 NA intron (NM_033225, intron 10 of 69) (AC)n|Simple_repeat|Simple_repeat -794568 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 166.5-53 chr6 61939221 61939671 + 0.5 NA intron (NR_146874, intron 4 of 13) L2a|LINE|L2 346779 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 118-65 chr2 235209282 235209733 + 0.5 NA Intergenic MER63C|DNA|hAT-Blackjack 181772 NM_001371306 172.167-35 chr3 144499846 144500366 + 0.5 NA Intergenic Intergenic 527025 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 165.333-23 chr15 26901987 26902355 + 0.5 NA intron (NM_001165037, intron 6 of 10) L1MD3|LINE|L1 35045 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 159.167-73 chr9 130292622 130293103 + 0.5 NA intron (NM_001291815, intron 4 of 97) L1MC5a|LINE|L1 27102 NM_001291815 256158 Hs.32194 NM_144655 ENSG00000148357 HMCN2 - hemicentin 2 protein-coding 129.167-2 chr1 67085398 67085838 + 0.5 NA Intergenic Intergenic -31470 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 140.167-53 chr5 41339143 41339532 + 0.5 NA intron (NM_001005473, intron 2 of 2) intron (NM_001005473, intron 2 of 2) -77868 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 145.833-40 chr2 39865688 39866052 + 0.5 NA Intergenic Intergenic -51764 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 115.833-60 chr5 99323741 99324008 + 0.5 NA Intergenic L1PA10|LINE|L1 -210116 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 142.167-23 chr14 25280088 25280460 + 0.5 NA Intergenic AluJr|SINE|Alu -229977 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 198.667-4 chr1 211340338 211340814 + 0.5 NA intron (NM_001319207, intron 1 of 10) LTR14B|LTR|ERVK -5788 NM_145759 7188 Hs.523930 NM_004619 ENSG00000082512 TRAF5 MGC:39780|RNF84 TNF receptor associated factor 5 protein-coding 115.5-50 chr2 13209160 13209524 + 0.5 NA Intergenic L1MC4|LINE|L1 -202329 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 243.667-28 chr5 35414042 35414738 + 0.5 NA Intergenic Intergenic -183903 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 133.333-89 chr4 74732293 74732631 + 0.5 NA Intergenic Intergenic 62061 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 145.167-58 chr5 159952739 159953164 + 0.5 NA intron (NM_000679, intron 1 of 1) intron (NM_000679, intron 1 of 1) 36469 NM_000679 147 Hs.368632 NM_000679 ENSG00000170214 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 164.167-44 chr3 87122756 87123214 + 0.5 NA intron (NR_104153, intron 1 of 2) intron (NR_104153, intron 1 of 2) 33705 NR_047469 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 113.833-44 chr2 185268328 185268595 + 0.5 NA Intergenic Intergenic -101389 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 120.5-55 chr2 208090001 208090445 + 0.5 NA Intergenic Intergenic -28906 NR_038437 100507443 Hs.570295 NR_038437 LOC100507443 - uncharacterized LOC100507443 ncRNA 117.833-19 chr12 45860305 45860717 + 0.5 NA intron (NM_152641, intron 15 of 20) intron (NM_152641, intron 15 of 20) 130063 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 202.5-4 chr12 88358197 88358773 + 0.5 NA Intergenic Intergenic 216178 NM_001366580 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 182-44 chr5 121359264 121359872 + 0.5 NA Intergenic Intergenic 37018 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 115.167-72 chr3 185098970 185099361 + 0.5 NA intron (NM_001025266, intron 1 of 1) L1PA13|LINE|L1 53895 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 127.667-14 chr11 11236231 11236561 + 0.5 NA Intergenic Intergenic 116854 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 261.833-10 chr2 37402405 37403190 + 0.5 NA Intergenic LTR37B|LTR|ERV1 58167 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 171.167-42 chr4 158642061 158642740 + 0.5 NA intron (NR_045581, intron 14 of 17) L1MA5A|LINE|L1 29487 NM_001008393 201725 Hs.380920 NM_001008393 ENSG00000205208 C4orf46 RCDG1 chromosome 4 open reading frame 46 protein-coding 186.333-19 chr14 38795515 38796073 + 0.5 NA intron (NR_039982, intron 4 of 4) intron (NR_039982, intron 4 of 4) -86802 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 145.833-2 chr1 68244163 68244455 + 0.5 NA Intergenic Intergenic -11763 NM_001002292 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 135.667-86 chr5 43418862 43419412 + 0.5 NA Intergenic AluSx|SINE|Alu -6746 NM_001301873 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 158.5-43 chr2 143686602 143687213 + 0.5 NA intron (NM_018460, intron 12 of 13) intron (NM_018460, intron 12 of 13) -250160 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 166.333-65 chr6 39899973 39900418 + 0.5 NA exon (NM_001201427, exon 23 of 25) exon (NM_001201427, exon 23 of 25) -2815 NR_125831 100505635 Hs.668513 NR_125831 ENSG00000235033 LOC100505635 - uncharacterized LOC100505635 ncRNA 114.667-80 chr3 97754566 97755146 + 0.5 NA 3' UTR (NM_001080448, exon 18 of 18) 3' UTR (NM_001080448, exon 18 of 18) -9665 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 147.333-41 chr2 102511206 102511564 + 0.5 NA intron (NM_001011552, intron 6 of 11) intron (NM_001011552, intron 6 of 11) 38159 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 115.667-64 chr20 20936302 20936809 + 0.5 NA Intergenic L1ME3A|LINE|L1 169803 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 127-43 chr18 74329284 74329635 + 0.5 NA intron (NM_001174123, intron 6 of 13) intron (NM_001174123, intron 6 of 13) 13620 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 120.167-79 chr8 99151033 99151463 + 0.5 NA intron (NM_017890, intron 14 of 61) L1MC1|LINE|L1 137982 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 142.167-79 chr8 113541656 113542135 + 0.5 NA Intergenic Intergenic -104956 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 129.167-47 chr3 29750601 29750927 + 0.5 NA intron (NM_001003792, intron 5 of 13) LTR49-int|LTR|ERV1 183392 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 133.333-8 chr1 234777913 234778292 + 0.5 NA Intergenic MIR|SINE|MIR -18046 NR_148962 100130249 Hs.617350 NR_148962 ENSG00000279261 PP2672 - uncharacterized LOC100130249 ncRNA 137.333-19 chr12 17422743 17423088 + 0.5 NA Intergenic L1MCa|LINE|L1 166163 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 145.5-85 chr8 120703194 120703500 + 0.5 NA intron (NM_021021, intron 1 of 6) AluSz|SINE|Alu -57906 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 166.333-18 chr13 49423348 49423742 + 0.5 NA intron (NM_001287337, intron 3 of 11) AluJr|SINE|Alu -9794 NM_001287338 81617 Hs.87159 NM_030925 ENSG00000102547 CAB39L MO25-BETA|MO2L|bA103J18.3 calcium binding protein 39 like protein-coding 130.333-60 chr3 72562030 72562367 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 102051 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 211.833-22 chr4 115530098 115530817 + 0.5 NA Intergenic Intergenic -416837 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 123.667-62 chr20 49813132 49813456 + 0.5 NA intron (NR_048539, intron 1 of 13) intron (NR_048539, intron 1 of 13) 466 NM_015266 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 150.167-23 chr16 79332272 79332661 + 0.5 NA Intergenic AluSz|SINE|Alu 268271 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 165-42 chr5 17070832 17071298 + 0.5 NA Intergenic L1ME3D|LINE|L1 84927 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 115-29 chr15 70605601 70606072 + 0.5 NA Intergenic Intergenic -9711 NR_126481 104548972 NR_126481 ENSG00000281264 SALRNA3 SAL-RNA3|XLOC_025918 senescence associated long non-coding RNA 3 ncRNA 165-32 chr22 21854805 21855402 + 0.5 NA intron (NM_002745, intron 1 of 8) intron (NM_002745, intron 1 of 8) 12577 NM_138957 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 175.833-36 chr5 72688841 72689376 + 0.5 NA Intergenic (GATATA)n|Simple_repeat|Simple_repeat -28439 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 138.333-113 chr8 136505836 136506191 + 0.5 NA Intergenic Intergenic -24785 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 122-2 chr1 63595720 63596129 + 0.5 NA intron (NM_001172819, intron 1 of 10) L2c|LINE|L2 2115 NM_001172819 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 121-47 chr2 75415446 75415759 + 0.5 NA Intergenic LTR16E2|LTR|ERVL -108466 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 144.833-79 chrX 129070192 129070579 + 0.5 NA Intergenic L1MC1|LINE|L1 453105 NM_001282874 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 166.833-32 chr5 77089431 77089933 + 0.5 NA intron (NR_024398, intron 2 of 3) intron (NR_024398, intron 2 of 3) -2397 NM_001329564 84327 Hs.584988 NM_032367 ENSG00000132846 ZBED3 - zinc finger BED-type containing 3 protein-coding 128.5-12 chr10 90619677 90619987 + 0.5 NA Intergenic Intergenic -79027 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 127.167-19 chr11 27605323 27605691 + 0.5 NA intron (NR_033314, intron 3 of 6) intron (NR_033314, intron 3 of 6) 29120 NR_102708 101410541 Hs.471439 NR_102708 ENSG00000254934 LINC00678 - long intergenic non-protein coding RNA 678 ncRNA 145-14 chr10 104177179 104177548 + 0.5 NA intron (NM_025145, intron 19 of 37) LTR33|LTR|ERVL 41520 NR_030340 693194 NR_030340 ENSG00000208033 MIR609 MIRN609|hsa-mir-609 microRNA 609 ncRNA 121.833-8 chr10 105014561 105015055 + 0.5 NA intron (NM_014978, intron 4 of 26) MLT1A0|LTR|ERVL-MaLR -348592 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 153.5-44 chr22 28247314 28247879 + 0.5 NA intron (NM_001145418, intron 5 of 22) L2c|LINE|L2 -212273 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 123-19 chr13 94777178 94777724 + 0.5 NA intron (NR_110754, intron 2 of 4) intron (NR_110754, intron 2 of 4) 16510 NR_110754 101927284 Hs.551673 NR_110754 LOC101927284 - uncharacterized LOC101927284 ncRNA 132.333-83 chr5 11813671 11814043 + 0.5 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 90589 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 205.833-25 chr3 193850087 193850712 + 0.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR -6390 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 226-10 chr2 114485865 114486390 + 0.5 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 24550 NM_001321905 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 127.833-38 chr2 67559314 67559717 + 0.5 NA Intergenic Intergenic 162182 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 124.167-13 chr11 10608978 10609289 + 0.5 NA intron (NM_001100163, intron 11 of 20) intron (NM_001100163, intron 11 of 20) -40468 NM_006691 10894 Hs.655332 NM_006691 ENSG00000133800 LYVE1 CRSBP-1|HAR|LYVE-1|XLKD1 lymphatic vessel endothelial hyaluronan receptor 1 protein-coding 200.833-23 chr22 28149919 28150416 + 0.5 NA intron (NM_001145418, intron 6 of 22) L1ME3A|LINE|L1 -229555 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 118.333-16 chr11 35820044 35820337 + 0.5 NA Intergenic Intergenic -123791 NM_001304263 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 143.667-92 chr5 159635309 159635796 + 0.5 NA Intergenic L1M4b|LINE|L1 -169276 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 114.667-133 chr9 32035957 32036243 + 0.5 NA Intergenic L1MEf|LINE|L1 -348503 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 121.667-89 chr7 84660905 84661232 + 0.5 NA Intergenic L1MB8|LINE|L1 128592 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 169.833-14 chr12 45758960 45759459 + 0.5 NA intron (NM_152641, intron 3 of 20) intron (NM_152641, intron 3 of 20) 29500 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 137.667-57 chr2 108410486 108411090 + 0.5 NA Intergenic Intergenic 32834 NM_006588 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 167.167-9 chr10 33277844 33278464 + 0.5 NA intron (NM_001244973, intron 2 of 16) intron (NM_001244973, intron 2 of 16) 56513 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 172.167-22 chr17 58808619 58809014 + 0.5 NA intron (NM_014906, intron 1 of 6) L1MB7|LINE|L1 52947 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 128.5-63 chr5 119899019 119899404 + 0.5 NA Intergenic L1M4a1|LINE|L1 269652 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 123.833-66 chr8 80507228 80507652 + 0.5 NA intron (NM_001105539, intron 2 of 5) AluY|SINE|Alu 21214 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 145.167-4 chr1 102795361 102795813 + 0.5 NA Intergenic L1MC4|LINE|L1 312909 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 142-52 chr2 216157418 216157851 + 0.5 NA intron (NM_021141, intron 14 of 20) intron (NM_021141, intron 14 of 20) 48286 NM_021141 7520 Hs.388739 NM_021141 ENSG00000079246 XRCC5 KARP-1|KARP1|KU80|KUB2|Ku86|NFIV X-ray repair cross complementing 5 protein-coding 121.333-99 chr6 167902397 167902719 + 0.5 NA intron (NM_001207008, intron 11 of 31) MER44A|DNA|TcMar-Tigger 74381 NM_001129895 100128124 Hs.448059 NM_001129895 HGC6.3 - uncharacterized LOC100128124 protein-coding 142.667-64 chr22 27201482 27201929 + 0.5 NA Intergenic LTR37A|LTR|ERV1 14189 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 114.167-64 chr3 30292200 30292635 + 0.5 NA Intergenic Intergenic -226451 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 137.333-116 chrX 100747548 100748005 + 0.5 NA Intergenic L1MA10|LINE|L1 -15655 NM_001370166 94121 Hs.592224 NM_080737 ENSG00000102362 SYTL4 SLP4 synaptotagmin like 4 protein-coding 118.833-22 chr14 55871034 55871373 + 0.5 NA Intergenic L1ME4a|LINE|L1 -74529 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 169.333-44 chr22 30638656 30639145 + 0.5 NA intron (NM_001318371, intron 1 of 2) AluSz6|SINE|Alu 3085 NM_001318370 339665 Hs.660384 NM_001001479 ENSG00000100036 SLC35E4 - solute carrier family 35 member E4 protein-coding 116.5-72 chr5 158388330 158388758 + 0.5 NA intron (NR_109888, intron 1 of 6) intron (NR_109888, intron 1 of 6) 21229 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 165.5-4 chr1 228549883 228550321 + 0.5 NA Intergenic HSAT4|Satellite|centr -37814 NM_001287262 100129094 Hs.730208 NM_001287262 BTNL10 BTN4|BUTR1 butyrophilin like 10 protein-coding 244.5-23 chr5 180465850 180466447 + 0.5 NA Intergenic Intergenic -28231 NM_001370473 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 113.167-55 chr4 32756794 32757252 + 0.5 NA Intergenic L1PB3|LINE|L1 405985 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 230.667-33 chr8 125021688 125022390 + 0.5 NA 3' UTR (NM_003129, exon 11 of 11) 3' UTR (NM_003129, exon 11 of 11) 23534 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 169.833-6 chr10 17905977 17906390 + 0.5 NA intron (NM_002438, intron 26 of 29) intron (NM_002438, intron 26 of 29) -45656 NM_152725 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 185.333-40 chr3 134424104 134424526 + 0.5 NA Intergenic Intergenic -13512 NR_039951 100616281 NR_039951 ENSG00000284561 MIR4788 - microRNA 4788 ncRNA 169.167-4 chr10 25948464 25948840 + 0.5 NA intron (NM_001368265, intron 2 of 7) intron (NM_001368265, intron 2 of 7) 14423 NM_001368265 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 141.833-48 chr8 112912277 112912842 + 0.5 NA intron (NM_001363185, intron 8 of 66) L1MA8|LINE|L1 269066 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 228.167-8 chr16 73590769 73591529 + 0.5 NA Intergenic AluSx3|SINE|Alu 204344 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 122.333-97 chr6 139228555 139229028 + 0.5 NA Intergenic Intergenic 63207 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 142.167-7 chr1 241296945 241297362 + 0.5 NA intron (NM_001282778, intron 2 of 16) L2a|LINE|L2 58673 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 124.167-29 chr15 66547383 66547779 + 0.5 NA non-coding (NR_103739, exon 9 of 9) non-coding (NR_103739, exon 9 of 9) 17916 NM_207338 197021 Hs.680983 NM_207338 ENSG00000188501 LCTL KLG|KLPH lactase like protein-coding 118.167-7 chr10 47376300 47376831 + 0.5 NA intron (NM_001346932, intron 2 of 3) intron (NM_001346932, intron 2 of 3) 7728 NM_001346932 118738 Hs.27788 NM_153034 ENSG00000265763 ZNF488 - zinc finger protein 488 protein-coding 143.667-61 chr2 151618095 151618582 + 0.5 NA exon (NM_004543, exon 70 of 149) exon (NM_004543, exon 70 of 149) 116138 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 135.167-29 chr14 79244197 79244548 + 0.5 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -35008 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 183.833-5 chr10 122933132 122933700 + 0.5 NA intron (NM_024942, intron 5 of 5) AluSx1|SINE|Alu 20811 NM_024942 80007 Hs.501286 NM_024942 ENSG00000119965 C10orf88 - chromosome 10 open reading frame 88 protein-coding 134-69 chr3 3189076 3189581 + 0.5 NA Intergenic Intergenic -9611 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 167.5-32 chr2 72106425 72106985 + 0.5 NA Intergenic MER20|DNA|hAT-Charlie 41157 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 154.5-29 chr18 21058731 21059270 + 0.5 NA intron (NM_005406, intron 2 of 32) intron (NM_005406, intron 2 of 32) 52813 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 161-49 chr5 14491648 14492321 + 0.5 NA intron (NM_007118, intron 48 of 56) intron (NM_007118, intron 48 of 56) 28001 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 125-56 chr3 125513499 125513987 + 0.5 NA intron (NM_003794, intron 1 of 13) intron (NM_003794, intron 1 of 13) 6459 NM_003794 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 116.333-9 chr1 147463284 147463702 + 0.5 NA intron (NR_038423, intron 3 of 3) L1PA14|LINE|L1 54382 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 133.333-71 chr3 4482904 4483226 + 0.5 NA Intergenic AluSx1|SINE|Alu 10098 NR_108075 100996539 Hs.190365 NR_108075 ITPR1-DT ITPR1-AS1 ITPR1 divergent transcript ncRNA 138.833-69 chr5 86378394 86378893 + 0.5 NA Intergenic Intergenic 96199 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 168.5-56 chr5 148249708 148250075 + 0.5 NA Intergenic Intergenic 11366 NM_001363511 105378220 Hs.534838 NM_001363511 ENSG00000248109 MARCOL - MARCO like protein-coding 122-70 chr5 120453211 120453541 + 0.5 NA Intergenic Intergenic -10902 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 128-57 chr20 20861149 20861448 + 0.5 NA Intergenic Intergenic -148654 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 188.5-32 chr2 124676905 124677564 + 0.5 NA intron (NM_130773, intron 13 of 23) LTR12|LTR|ERV1 651947 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 178.167-30 chr20 54960730 54961228 + 0.5 NA Intergenic Intergenic -462064 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 122.667-104 chrX 63632880 63633314 + 0.5 NA Intergenic HERVL-int|LTR|ERVL 38405 NR_138419 100874355 Hs.671524 NR_138419 ENSG00000231729 ARHGEF9-IT1 - ARHGEF9 intronic transcript 1 ncRNA 122.833-26 chr14 64195870 64196446 + 0.5 NA intron (NM_015180, intron 99 of 114) intron (NM_015180, intron 99 of 114) -17986 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 116-17 chr12 33396637 33396974 + 0.5 NA intron (NM_198992, intron 3 of 6) AluSc|SINE|Alu 43014 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 252.667-18 chr4 62283062 62283625 + 0.5 NA Intergenic AluJr|SINE|Alu -121578 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 149.333-83 chr6 136777547 136777903 + 0.5 NA intron (NM_005923, intron 1 of 29) intron (NM_005923, intron 1 of 29) -6322 NR_134635 101928429 Hs.672896 NR_134635 LOC101928429 - uncharacterized LOC101928429 ncRNA 145.333-98 chr8 142086006 142086347 + 0.5 NA Intergenic MER58A|DNA|hAT-Charlie -90163 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 131.167-64 chr5 76978607 76978961 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 25739 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 130.167-60 chr5 147789228 147789600 + 0.5 NA Intergenic MIRb|SINE|MIR -6686 NM_014790 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 136.167-17 chr12 2408306 2408783 + 0.5 NA intron (NM_199460, intron 3 of 49).2 L1MDa|LINE|L1 138768 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 128-78 chr6 18262314 18262813 + 0.5 NA intron (NM_003472, intron 2 of 10) intron (NM_003472, intron 2 of 10) 1967 NM_001134709 7913 Hs.484813 NM_003472 ENSG00000124795 DEK D6S231E DEK proto-oncogene protein-coding 137.5-50 chr21 33693633 33694174 + 0.5 NA intron (NM_001001132, intron 1 of 29) intron (NM_001001132, intron 1 of 29) 51402 NM_001331011 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 152.167-32 chr2 129141192 129141804 + 0.5 NA Intergenic L1M4c|LINE|L1 132393 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 122-96 chrX 40746216 40746609 + 0.5 NA Intergenic LTR16B2|LTR|ERVL -10870 NM_004229 9282 Hs.407604 NM_004229 ENSG00000180182 MED14 CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170 mediator complex subunit 14 protein-coding 207.333-4 chr1 117166440 117167135 + 0.5 NA intron (NR_045603, intron 2 of 5) intron (NR_045603, intron 2 of 5) 37049 NM_001253849 79679 Hs.546434 NM_024626 ENSG00000134258 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 117.667-84 chr4 1842592 1842869 + 0.5 NA intron (NM_012318, intron 2 of 13) intron (NM_012318, intron 2 of 13) 13426 NM_012318 3954 Hs.120165 NM_012318 ENSG00000168924 LETM1 SLC55A1 leucine zipper and EF-hand containing transmembrane protein 1 protein-coding 132.667-82 chr6 85634375 85634778 + 0.5 NA intron (NM_001159676, intron 5 of 10) intron (NM_001159676, intron 5 of 10) 6875 NM_001159675 10492 Hs.571177 NM_006372 ENSG00000135316 SYNCRIP GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q synaptotagmin binding cytoplasmic RNA interacting protein protein-coding 127.5-35 chr2 50298357 50298669 + 0.5 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 49241 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 123.667-82 chr4 182878943 182879544 + 0.5 NA Intergenic Intergenic 38010 NM_001351743 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 120.333-128 chrX 102093013 102093349 + 0.5 NA Intergenic L1M5|LINE|L1 -32498 NM_080390 140597 Hs.401835 NM_080390 ENSG00000184905 TCEAL2 MY0876G05|WEX1|my048 transcription elongation factor A like 2 protein-coding 180.833-11 chr12 32203895 32204411 + 0.5 NA intron (NR_148725, intron 1 of 9) AluJb|SINE|Alu 97306 NR_148725 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 124.167-31 chr16 7499462 7499838 + 0.5 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 166805 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 113.667-11 chr1 238658960 238659251 + 0.5 NA Intergenic MER4D|LTR|ERV1 -173088 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 152-13 chr10 101479869 101480339 + 0.5 NA intron (NM_001256856, intron 3 of 13) intron (NM_001256856, intron 3 of 13) 108153 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 149.5-71 chr9 37760143 37760526 + 0.5 NA intron (NR_104612, intron 1 of 8) intron (NR_104612, intron 1 of 8) 6529 NM_144964 158234 Hs.655614 NM_144964 ENSG00000165275 TRMT10B RG9MTD3|bA3J10.9 tRNA methyltransferase 10B protein-coding 120.833-38 chr20 11956039 11956392 + 0.5 NA Intergenic LTR16A2|LTR|ERVL 38322 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 159.5-42 chr5 39030226 39030670 + 0.5 NA intron (NM_001285439, intron 2 of 38) intron (NM_001285439, intron 2 of 38) 43951 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 188.5-27 chr2 34336863 34337371 + 0.5 NA Intergenic L1ME2|LINE|L1 269891 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 157.333-54 chr4 148279043 148279448 + 0.5 NA intron (NM_000901, intron 2 of 8) intron (NM_000901, intron 2 of 8) 163169 NM_001166104 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 187.833-16 chr14 74442424 74443091 + 0.5 NA Intergenic L2c|LINE|L2 -16547 NM_001105579 646658 Hs.12400 NM_001105579 ENSG00000183379 SYNDIG1L CAPUCIN|DSPC1|IFITMD4|TMEM90A synapse differentiation inducing 1 like protein-coding 134.333-3 chr1 109463890 109464273 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -2465 NM_001040709 284612 Hs.528366 NM_001006603 ENSG00000143028 SYPL2 MG29 synaptophysin like 2 protein-coding 133.833-31 chr15 98928014 98928535 + 0.5 NA intron (NM_001291858, intron 13 of 20) intron (NM_001291858, intron 13 of 20) 77382 NM_001102612 145814 Hs.592021 NM_001102612 ENSG00000183571 PGPEP1L - pyroglutamyl-peptidase I like protein-coding 127.667-3 chr1 72631821 72632185 + 0.5 NA Intergenic Intergenic -349464 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 220.5-6 chr10 60413754 60414381 + 0.5 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -24192 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 115.167-80 chr5 13160788 13161137 + 0.5 NA Intergenic L1MC|LINE|L1 -128076 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 145.5-82 chr8 88782706 88783235 + 0.5 NA Intergenic L1MEc|LINE|L1 -455487 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 174.833-18 chr18 21305826 21306299 + 0.5 NA intron (NM_001142966, intron 1 of 32) L2a|LINE|L2 63820 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 127.5-30 chr18 22164087 22164462 + 0.5 NA Intergenic Intergenic 4694 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 134.833-48 chr5 9581732 9582080 + 0.5 NA Intergenic Intergenic 33079 NR_003689 100113384 NR_003689 SNORD123 - small nucleolar RNA, C/D box 123 snoRNA 123.5-35 chr17 63281747 63282099 + 0.5 NA intron (NM_025185, intron 8 of 25) MLT1C|LTR|ERVL-MaLR 158344 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 134.667-97 chr7 23464434 23464807 + 0.5 NA intron (NM_006547, intron 2 of 14) AluSx|SINE|Alu 5871 NM_006547 10643 Hs.700696 NM_006547 ENSG00000136231 IGF2BP3 CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3 insulin like growth factor 2 mRNA binding protein 3 protein-coding 123.833-36 chr3 17680853 17681319 + 0.5 NA intron (NM_001134381, intron 1 of 23) intron (NM_001134381, intron 1 of 23) 18934 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 132.5-89 chr7 22976593 22976986 + 0.5 NA exon (NM_001363466, exon 6 of 12) exon (NM_001363466, exon 6 of 12) 37341 NM_032581 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 152.833-61 chr6 92097578 92098005 + 0.5 NA Intergenic Intergenic -407363 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 203.333-37 chr4 160522798 160523470 + 0.5 NA Intergenic Intergenic -745350 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 123.833-2 chr1 107187055 107187374 + 0.5 NA intron (NM_001113226, intron 1 of 6) L2a|LINE|L2 39145 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 122.667-4 chr1 176685526 176685859 + 0.5 NA intron (NM_021936, intron 4 of 4) intron (NM_021936, intron 4 of 4) 222517 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 168.167-57 chr8 113788267 113788819 + 0.5 NA Intergenic Intergenic -351604 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 179-29 chr2 159999747 160000620 + 0.5 NA intron (NM_001007267, intron 11 of 26) intron (NM_001007267, intron 11 of 26) 62432 NM_001007267 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 130.833-73 chr8 105484345 105484827 + 0.5 NA intron (NM_001362837, intron 3 of 7) MIR|SINE|MIR 165043 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 257.333-3 chr13 39335754 39336314 + 0.5 NA Intergenic Intergenic 267159 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 151.333-4 chr1 228657446 228657824 + 0.5 NA intron (NR_037962, intron 1 of 2) L1M4c|LINE|L1 -11477 NR_023374 100169763 NR_023374 ENSG00000199270 RNA5S12 RN5S12 RNA, 5S ribosomal 12 rRNA 135.5-18 chr11 59798918 59799306 + 0.5 NA intron (NM_004177, intron 10 of 10) AluJr|SINE|Alu 11666 NM_017840 54948 Hs.530734 NM_017840 ENSG00000166902 MRPL16 L16mt|MRP-L16|PNAS-111 mitochondrial ribosomal protein L16 protein-coding 140.167-59 chr6 22052364 22052729 + 0.5 NA intron (NR_015410, intron 7 of 11) MIR|SINE|MIR 94647 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 178.5-38 chr18 9488792 9489484 + 0.5 NA intron (NM_006788, intron 1 of 9) intron (NM_006788, intron 1 of 9) 13625 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 178.167-6 chr10 90049177 90049820 + 0.5 NA Intergenic AluJb|SINE|Alu -92125 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 127-53 chr2 167112791 167113291 + 0.5 NA intron (NM_152381, intron 2 of 10) L1PA15|LINE|L1 27914 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 149.667-42 chr2 85199741 85200181 + 0.5 NA intron (NM_031283, intron 3 of 11) L1MB7|LINE|L1 13552 NR_046797 100874334 Hs.693125 NR_046797 ENSG00000231134 TCF7L1-IT1 - TCF7L1 intronic transcript 1 ncRNA 115-35 chr19 28386351 28386679 + 0.5 NA Intergenic Intergenic -220173 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 113.667-24 chr11 73482390 73482732 + 0.5 NA intron (NM_001286051, intron 1 of 5) intron (NM_001286051, intron 1 of 5) 105893 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 135.833-5 chr11 48090959 48091351 + 0.5 NA intron (NM_001098503, intron 1 of 8) intron (NM_001098503, intron 1 of 8) -5627 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 138-87 chr5 102696841 102697339 + 0.5 NA Intergenic L2c|LINE|L2 -25626 NR_103753 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 159.167-26 chr17 57355876 57356240 + 0.5 NA intron (NM_001322250, intron 5 of 13) AluSx1|SINE|Alu 99039 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 115.5-15 chr10 57310179 57310443 + 0.5 NA Intergenic HERV16-int|LTR|ERVL -5752 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 137.5-38 chr17 70127560 70127884 + 0.5 NA intron (NM_001291622, intron 4 of 5) intron (NM_001291622, intron 4 of 5) 22877 NM_170742 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 168.167-53 chr7 95482280 95482925 + 0.5 NA Intergenic LTR81B|LTR|Gypsy -3299 NM_145872 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 134.167-51 chr22 22009787 22010099 + 0.5 NA intron (NR_135291, intron 4 of 6) MER92C|LTR|ERV1 -27156 NM_001349852 8940 Hs.436401 NM_003935 ENSG00000100038 TOP3B TOP3B1 DNA topoisomerase III beta protein-coding 182-15 chr14 58951806 58952404 + 0.5 NA intron (NR_110547, intron 4 of 5) L1MEc|LINE|L1 123817 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 125.833-86 chr7 158220420 158220764 + 0.5 NA intron (NM_001308267, intron 2 of 21) L1PA16|LINE|L1 312221 NR_030325 693180 NR_030325 ENSG00000207637 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 120.167-47 chr20 15765892 15766296 + 0.5 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 157220 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 118.5-92 chr8 91668367 91668648 + 0.5 NA Intergenic Intergenic 349173 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 128.5-13 chr10 94035288 94035676 + 0.5 NA intron (NM_001288989, intron 2 of 32) intron (NM_001288989, intron 2 of 32) 41551 NM_001288989 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 115.833-63 chr6 63289398 63289844 + 0.5 NA intron (NM_001143940, intron 2 of 4) A-rich|Low_complexity|Low_complexity 30356 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 145.667-78 chr4 160891951 160892316 + 0.5 NA Intergenic L1MA3|LINE|L1 -1114349 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 168-73 chr7 36641409 36641814 + 0.5 NA intron (NM_001177507, intron 3 of 19) intron (NM_001177507, intron 3 of 19) -41491 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 143.333-72 chr5 112086728 112087110 + 0.5 NA Intergenic Intergenic -73607 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 124-11 chr10 27128024 27128377 + 0.5 NA intron (NM_139312, intron 9 of 19) intron (NM_139312, intron 9 of 19) 26184 NM_139312 10730 Hs.74647 NM_014263 ENSG00000136758 YME1L1 FTSH|MEG4|OPA11|PAMP|YME1L YME1 like 1 ATPase protein-coding 117.5-73 chr8 107849192 107849578 + 0.5 NA Intergenic Intergenic 232554 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 118.833-62 chr5 19806155 19806449 + 0.5 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 79970 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 114-79 chr5 76478191 76478449 + 0.5 NA intron (NM_006633, intron 2 of 35) AluSx|SINE|Alu -69089 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 144.667-91 chr7 114094478 114095130 + 0.5 NA intron (NR_033766, intron 1 of 19) AluJr4|SINE|Alu 8477 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 161.667-59 chr4 4329128 4329672 + 0.5 NA Intergenic AluSx|SINE|Alu 39149 NM_145291 166793 Hs.419997 NM_145291 ENSG00000168826 ZBTB49 ZNF509 zinc finger and BTB domain containing 49 protein-coding 149.833-63 chr9 36951520 36951965 + 0.5 NA intron (NR_104000, intron 6 of 9) L1MEd|LINE|L1 -58211 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 167.667-39 chr2 2520778 2521556 + 0.5 NA Intergenic MIRb|SINE|MIR -189892 NM_001303052 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 145.333-52 chr3 124711042 124711372 + 0.5 NA intron (NM_007064, intron 24 of 26) AluJo|SINE|Alu -19159 NR_033434 7372 Hs.2057 NM_000373 ENSG00000114491 UMPS OPRT uridine monophosphate synthetase protein-coding 114.167-56 chr20 14249497 14249803 + 0.5 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 87962 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 123.333-24 chr11 43124190 43124561 + 0.5 NA Intergenic MIRb|SINE|MIR 144994 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 113.667-29 chr12 6043559 6043807 + 0.5 NA intron (NM_000552, intron 18 of 51) intron (NM_000552, intron 18 of 51) -3500 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 190.5-46 chr6 92014994 92015665 + 0.5 NA Intergenic AluYb8|SINE|Alu -324901 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 162.167-37 chr4 147853598 147854171 + 0.5 NA intron (NM_024605, intron 4 of 22) intron (NM_024605, intron 4 of 22) 71289 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 143.5-10 chr11 43995012 43995354 + 0.5 NA Intergenic Intergenic 52546 NM_001145033 387763 Hs.530443 NM_001145033 ENSG00000187479 C11orf96 AG2 chromosome 11 open reading frame 96 protein-coding 229.667-9 chr13 60045188 60046069 + 0.5 NA intron (NM_001258367, intron 2 of 25) L1ME4c|LINE|L1 32325 NR_051993 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 144.667-36 chr13 78274613 78274952 + 0.5 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) 219927 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 127.833-82 chrX 77990139 77990661 + 0.5 NA intron (NM_001282224, intron 4 of 21) L1ME4a|LINE|L1 -20762 NM_001029891 441531 Hs.632822 NM_001029891 ENSG00000226784 PGAM4 PGAM-B|PGAM1|PGAM3|dJ1000K24.1 phosphoglycerate mutase family member 4 protein-coding 117.167-9 chr10 67907875 67908296 + 0.5 NA exon (NM_001314049, exon 4 of 7) exon (NM_001314049, exon 4 of 7) 16683 NM_001314049 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 160-7 chr1 186894138 186894502 + 0.5 NA intron (NM_001311193, intron 5 of 15) intron (NM_001311193, intron 5 of 15) 65371 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 122.667-85 chr5 71924266 71924539 + 0.5 NA Intergenic Intergenic -183073 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 173-7 chr10 18916522 18917249 + 0.5 NA Intergenic AluJr|SINE|Alu -131916 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 115.667-11 chr1 237807149 237807444 + 0.5 NA intron (NM_001035, intron 99 of 104) intron (NM_001035, intron 99 of 104) -54879 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 155.667-59 chr4 156264251 156264704 + 0.5 NA Intergenic Intergenic -310611 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 151.667-89 chr8 127237713 127238247 + 0.5 NA Intergenic Intergenic -6657 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 131.667-102 chr5 76997858 76998197 + 0.5 NA Intergenic Intergenic -32377 NM_018046 55109 Hs.634849 NM_018046 ENSG00000164252 AGGF1 GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q angiogenic factor with G-patch and FHA domains 1 protein-coding 161.833-31 chr4 85867284 85867867 + 0.5 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) 39638 NM_001287805 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 167.167-11 chr10 67273766 67274355 + 0.5 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 129350 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 199.167-38 chr6 136672258 136672722 + 0.5 NA intron (NM_005923, intron 7 of 29) L1MEg|LINE|L1 43376 NR_125858 101928461 Hs.666518 NR_125858 LOC101928461 - uncharacterized LOC101928461 ncRNA 162.833-36 chr5 3729830 3730246 + 0.5 NA Intergenic Intergenic 134206 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 119.833-23 chr11 121947253 121947583 + 0.5 NA Intergenic Intergenic 152426 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 185.167-13 chr14 42865041 42865581 + 0.5 NA Intergenic L1M5|LINE|L1 1258455 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 135.5-21 chr11 129890386 129890829 + 0.5 NA intron (NM_001143835, intron 3 of 26) L1ME3Cz|LINE|L1 2402 NM_006165 4798 Hs.530539 NM_006165 ENSG00000170322 NFRKB INO80G nuclear factor related to kappaB binding protein protein-coding 150.833-36 chr5 12773795 12774330 + 0.5 NA intron (NR_033383, intron 3 of 3) L1MD1|LINE|L1 106203 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 131.167-52 chr3 104106419 104106874 + 0.5 NA Intergenic L1P4|LINE|L1 -582530 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 153.333-35 chr2 18466268 18466633 + 0.5 NA Intergenic L2c|LINE|L2 94203 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 255 chr1 106608153 106609099 + 0.5 NA Intergenic Intergenic -209613 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 154-80 chr8 91244704 91245209 + 0.5 NA intron (NM_001282357, intron 2 of 18) intron (NM_001282357, intron 2 of 18) -4363 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 135.5-17 chr11 26099193 26099587 + 0.5 NA Intergenic Intergenic -89733 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 143.833-41 chr5 127692818 127693207 + 0.5 NA Intergenic Intergenic -10377 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 128.833-55 chr3 76904961 76905273 + 0.5 NA Intergenic Intergenic -134982 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 194.5-39 chr6 154089422 154090094 + 0.5 NA promoter-TSS (NM_001285528) promoter-TSS (NM_001285528) -4 NM_001285528 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 136.5-41 chr17 82104336 82104703 + 0.5 NA intron (NM_001367828, intron 16 of 16) intron (NM_001367828, intron 16 of 16) -6283 NM_004104 2194 Hs.83190 NM_004104 ENSG00000169710 FASN FAS|OA-519|SDR27X1 fatty acid synthase protein-coding 179.333-52 chr7 11528346 11528813 + 0.5 NA intron (NM_015204, intron 6 of 26) intron (NM_015204, intron 6 of 26) 303619 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 128.667-68 chr2 228245447 228245964 + 0.5 NA Intergenic LTR33|LTR|ERVL -64018 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 142.833-25 chr16 69461649 69462258 + 0.5 NA intron (NM_030579, intron 4 of 4) MIR|SINE|MIR 37358 NM_030579 80777 Hs.461131 NM_030579 ENSG00000103018 CYB5B CYB5-M|CYPB5M|OMB5 cytochrome b5 type B protein-coding 148.167-83 chr8 116304975 116305453 + 0.5 NA intron (NR_046215, intron 1 of 13) intron (NR_046215, intron 1 of 13) 19845 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 192.833-16 chr14 82535786 82536311 + 0.5 NA Intergenic Intergenic -106584 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 165.667-73 chr8 120454074 120454603 + 0.5 NA intron (NM_022045, intron 5 of 21) intron (NM_022045, intron 5 of 21) 8919 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 120-64 chr20 37948651 37948951 + 0.5 NA Intergenic L1MB8|LINE|L1 45674 NM_080607 128434 Hs.517029 NM_080607 ENSG00000132821 VSTM2L C20orf102|dJ1118M15.2 V-set and transmembrane domain containing 2 like protein-coding 135.5-26 chr13 99942487 99942859 + 0.5 NA intron (NR_120421, intron 1 of 4) intron (NR_120421, intron 1 of 4) 14492 NR_120421 101927437 Hs.619936 NR_120421 LOC101927437 - uncharacterized LOC101927437 ncRNA 121.167-70 chr5 99994264 99994559 + 0.5 NA Intergenic Intergenic 393843 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 128.333-51 chr18 6521376 6521857 + 0.5 NA intron (NR_120518, intron 2 of 5) L1MB2|LINE|L1 10200 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 131.333-10 chr10 60670492 60670955 + 0.5 NA intron (NM_001204403, intron 1 of 43) MLT1J|LTR|ERVL-MaLR 62805 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 219.5-45 chr8 134052002 134052726 + 0.5 NA Intergenic Intergenic 165868 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 114.667-120 chr7 114012784 114013269 + 0.5 NA Intergenic Intergenic -73301 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 117.667-110 chr6 64428403 64428892 + 0.5 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 621811 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 193.833-15 chr14 68605239 68605635 + 0.5 NA intron (NM_001321809, intron 11 of 11) LTR10E|LTR|ERV1 23350 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 141-42 chr2 77883623 77884293 + 0.5 NA intron (NR_110288, intron 1 of 3) MIR|SINE|MIR -31976 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 184.333-31 chr20 6977845 6978285 + 0.5 NA Intergenic Intergenic 210379 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 185.167-17 chr17 32416190 32416873 + 0.5 NA Intergenic L1M5|LINE|L1 -27979 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 137.333-98 chr8 100080057 100080450 + 0.5 NA exon (NM_001286692, exon 4 of 28) exon (NM_001286692, exon 4 of 28) 25373 NM_001286693 26166 Hs.120021 NM_015668 ENSG00000132554 RGS22 CT145|PRTD-NY2 regulator of G protein signaling 22 protein-coding 124.833-6 chr10 4852209 4852673 + 0.5 NA Intergenic Intergenic 26234 NM_001040177 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 224.167-28 chr7 123439989 123440784 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 92562 NR_104244 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 161.167-52 chr7 17686095 17686681 + 0.5 NA Intergenic Intergenic -127479 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 225.5-11 chr11 77989592 77990353 + 0.5 NA intron (NM_033547, intron 2 of 22) AluSz|SINE|Alu 4696 NM_033547 92105 Hs.533723 NM_033547 ENSG00000149262 INTS4 INT4|MST093 integrator complex subunit 4 protein-coding 133.833-11 chr10 67312190 67312542 + 0.5 NA intron (NM_001127384, intron 5 of 17) AluSg|SINE|Alu 91044 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 126.167-2 chr1 63576631 63577195 + 0.5 NA Intergenic AluSx4|SINE|Alu -16498 NM_002633 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 160-75 chr9 135049142 135049621 + 0.5 NA Intergenic Intergenic -26124 NM_014279 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 245.667-29 chr5 112983547 112984266 + 0.5 NA intron (NR_038352, intron 1 of 8) HAL1|LINE|L1 7108 NM_152624 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 131.167-55 chr3 178841483 178841774 + 0.5 NA intron (NM_181361, intron 4 of 4) THE1D|LTR|ERVL-MaLR 18777 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 165.167-48 chr6 102116301 102116888 + 0.5 NA Intergenic L1M3|LINE|L1 717609 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 154-46 chr20 18792931 18793416 + 0.5 NA promoter-TSS (NR_026885) promoter-TSS (NR_026885) 809 NR_026884 29075 Hs.584899 NM_014162 LINC00652 HSPC072 long intergenic non-protein coding RNA 652 ncRNA 180.167-13 chr13 21538303 21538807 + 0.5 NA intron (NM_152726, intron 4 of 11) AluJo|SINE|Alu 65615 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 156.833-36 chr3 60352722 60353199 + 0.5 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 264910 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 213-28 chr7 35634374 35634991 + 0.5 NA intron (NM_022373, intron 7 of 8) intron (NM_022373, intron 7 of 8) 60453 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 131.833-72 chr8 131461832 131462243 + 0.5 NA Intergenic MSTB|LTR|ERVL-MaLR -421128 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 144.5-53 chr22 37531257 37531772 + 0.5 NA Intergenic L1MB7|LINE|L1 -12099 NM_014550 29775 Hs.57973 NM_014550 ENSG00000100065 CARD10 BIMP1|CARMA3 caspase recruitment domain family member 10 protein-coding 114.167-99 chr9 9202055 9202432 + 0.5 NA intron (NM_002839, intron 9 of 45) intron (NM_002839, intron 9 of 45) 344225 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 173.5-22 chr16 66541296 66541786 + 0.5 NA intron (NM_001172644, intron 2 of 8) AluJr|SINE|Alu 8581 NM_001272050 7084 Hs.512619 NM_004614 ENSG00000166548 TK2 MTDPS2|MTTK|PEOB3|SCA31 thymidine kinase 2 protein-coding 129.333-106 chr8 129990028 129990444 + 0.5 NA intron (NM_001353245, intron 1 of 13) intron (NM_001353245, intron 1 of 13) 18217 NR_049826 100847051 NR_049826 ENSG00000264653 MIR5194 mir-5194 microRNA 5194 ncRNA 166.667-38 chr4 88985453 88985826 + 0.5 NA intron (NM_014883, intron 4 of 23) L1MC5a|LINE|L1 71546 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 145-92 chr8 108491505 108492079 + 0.5 NA Intergenic AluJr|SINE|Alu 48168 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 168.667-37 chr2 163443136 163443644 + 0.5 NA Intergenic Intergenic 292618 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 190.667-17 chr17 29476232 29476731 + 0.5 NA intron (NM_025142, intron 4 of 17) MIR|SINE|MIR 85556 NM_025142 57551 Hs.597434 NM_020791 ENSG00000160551 TAOK1 KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1 TAO kinase 1 protein-coding 163.667-70 chr8 124532145 124532631 + 0.5 NA intron (NM_001317889, intron 1 of 12) AluSz|SINE|Alu 6697 NM_032026 83940 Hs.170568 NM_032026 ENSG00000147687 TATDN1 CDA11 TatD DNase domain containing 1 protein-coding 139.667-78 chr5 118910329 118910727 + 0.5 NA intron (NM_001308081, intron 4 of 5) MLT1A0-int|LTR|ERVL-MaLR -64058 NR_036263 100422872 NR_036263 ENSG00000283429 MIR1244-3 - microRNA 1244-3 ncRNA 122.833-87 chr8 119483331 119483763 + 0.5 NA Intergenic Intergenic 67101 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 120.167-15 chr12 83711690 83712087 + 0.5 NA Intergenic Intergenic 1024733 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 120.667-31 chr12 114472077 114472442 + 0.5 NA Intergenic Intergenic -63817 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 118-6 chr1 105054530 105054911 + 0.5 NA Intergenic Intergenic 564215 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 164.333-30 chr2 80647397 80648147 + 0.5 NA exon (NM_001282597, exon 19 of 19) exon (NM_001282597, exon 19 of 19) 334393 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 156.5-68 chr5 42444052 42444568 + 0.5 NA intron (NM_001242401, intron 1 of 10) intron (NM_001242401, intron 1 of 10) 19329 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 132.334-8 chr7 87695794 87696471 + 0.5 NA intron (NM_138290, intron 3 of 11) intron (NM_138290, intron 3 of 11) 17191 NM_001348944 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 135.667-32 chr14 29817434 29817768 + 0.5 NA intron (NM_001330069, intron 1 of 18) MIR|SINE|MIR 109495 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 156-70 chr5 85175399 85175976 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR -790807 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 136.5-5 chr1 73479622 73480040 + 0.5 NA Intergenic Intergenic 173661 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 148.333-71 chr3 153299425 153299904 + 0.5 NA Intergenic L2|LINE|L2 137438 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 119.333-37 chr17 71523546 71524069 + 0.5 NA Intergenic AluSz6|SINE|Alu -321628 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 127.333-77 chr3 61323109 61323570 + 0.5 NA Intergenic Intergenic -71878 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 119.167-24 chr15 60043566 60043954 + 0.5 NA Intergenic Intergenic 39449 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 142.667-25 chr12 126692429 126692814 + 0.5 NA Intergenic Intergenic -2303 NR_110034 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 114-104 chr9 27119819 27120229 + 0.5 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 10883 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 152.833-31 chr2 77003920 77004502 + 0.5 NA intron (NR_110284, intron 3 of 3) THE1B-int|LTR|ERVL-MaLR 18246 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 163.5-9 chr10 45483645 45484180 + 0.5 NA intron (NM_001282866, intron 3 of 7) L1MA4A|LINE|L1 -30791 NR_120674 102724323 Hs.559151 NR_120674 ENSG00000231964 LOC102724323 - uncharacterized LOC102724323 ncRNA 153.833-60 chr8 80698549 80699036 + 0.5 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 175676 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 166.667-17 chr15 67467014 67467665 + 0.5 NA intron (NR_040051, intron 2 of 5) intron (NR_040051, intron 2 of 5) 53634 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 114.5-31 chr13 95821337 95821823 + 0.5 NA intron (NM_020121, intron 38 of 38) L1PB2|LINE|L1 144441 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 151.333-98 chr9 101392298 101392913 + 0.5 NA intron (NM_019051, intron 1 of 1) L1M2|LINE|L1 6013 NM_019051 54534 Hs.288224 NM_019051 ENSG00000136897 MRPL50 MRP-L50 mitochondrial ribosomal protein L50 protein-coding 163.5-60 chr5 67376298 67376722 + 0.5 NA Intergenic LTR16B2|LTR|ERVL -179711 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 143.5-28 chr16 53508400 53508849 + 0.5 NA Intergenic AluSg|SINE|Alu -5320 NM_001308325 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 131.5-63 chr5 42838325 42838684 + 0.5 NA Intergenic Intergenic -26428 NM_001093726 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 158.167-16 chr17 59367803 59368318 + 0.5 NA intron (NM_001005404, intron 2 of 4) L2c|LINE|L2 1977 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 127.333-50 chr2 72209275 72209529 + 0.5 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -61540 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 126.667-84 chr6 114744642 114744955 + 0.5 NA Intergenic Intergenic -681921 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 122.167-74 chr8 130564724 130565106 + 0.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -121241 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 118.667-91 chr5 29943674 29944235 + 0.5 NA Intergenic MamRTE1|LINE|RTE-BovB 63394 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 140.167-72 chr8 129059886 129060216 + 0.5 NA Intergenic Intergenic -94050 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 130-90 chr6 142830253 142830814 + 0.5 NA intron (NM_006734, intron 2 of 9) intron (NM_006734, intron 2 of 9) 114643 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 146.667-11 chr1 224261061 224261628 + 0.5 NA intron (NM_002533, intron 18 of 22) intron (NM_002533, intron 18 of 22) -4234 NR_031574 100313769 NR_031574 ENSG00000221406 MIR320B2 MIR320B-2|MIRN320B2|mir-320b-2 microRNA 320b-2 ncRNA 129.5-30 chr17 52098562 52098856 + 0.5 NA intron (NM_001082533, intron 2 of 9) intron (NM_001082533, intron 2 of 9) 60005 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 144.5-24 chr13 73573178 73573690 + 0.5 NA intron (NR_047009, intron 1 of 2) intron (NR_047009, intron 1 of 2) 9190 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 127.167-8 chr1 218828157 218828616 + 0.5 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) 90125 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 120.833-41 chr3 6116437 6116727 + 0.5 NA Intergenic Tigger2a|DNA|TcMar-Tigger 688867 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 116.5-95 chr8 137375291 137375559 + 0.5 NA Intergenic AluSq2|SINE|Alu 38163 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 181.667-66 chr8 76536362 76536918 + 0.5 NA Intergenic Intergenic 129986 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 114.333-4 chr1 67508742 67509161 + 0.5 NA Intergenic Intergenic -78549 NM_015640 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 114-46 chr14 87829233 87829653 + 0.5 NA Intergenic L1MD1|LINE|L1 163739 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 197-21 chr18 69296663 69297280 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -103917 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 157.333-35 chr2 44973337 44973767 + 0.5 NA Intergenic Intergenic -31674 NR_103786 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 215.667-49 chr7 109266268 109266980 + 0.5 NA Intergenic ERV24_Prim-int|LTR|ERV1 -382037 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 193.833-7 chr10 11608137 11608631 + 0.5 NA intron (NM_014688, intron 1 of 14) intron (NM_014688, intron 1 of 14) -2917 NR_160647 107984208 Hs.590986 NR_160647 LOC107984208 - uncharacterized LOC107984208 ncRNA 128.833-53 chr22 32214669 32215024 + 0.5 NA intron (NR_149072, intron 2 of 3) L1ME3G|LINE|L1 9731 NR_149072 110806273 Hs.382171 NR_149072 ENSG00000242082 SLC5A4-AS1 - SLC5A4 antisense RNA 1 ncRNA 123.333-40 chr15 51204406 51204887 + 0.5 NA intron (NR_146310, intron 1 of 2) intron (NR_146310, intron 1 of 2) -37544 NR_039863 100616369 NR_039863 ENSG00000266593 MIR4713 - microRNA 4713 ncRNA 130.833-37 chr20 57462939 57463452 + 0.5 NA Intergenic Intergenic 61672 NR_072975 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 187.333-51 chr3 52966259 52966958 + 0.5 NA intron (NM_016329, intron 2 of 20) AluY|SINE|Alu -69060 NM_198563 375346 Hs.744189 NM_198563 ENSG00000213533 STIMATE TMEM110 STIM activating enhancer protein-coding 137-28 chr13 21680896 21681186 + 0.5 NA intron (NM_002010, intron 1 of 2) intron (NM_002010, intron 1 of 2) 9968 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 116-67 chr4 109210817 109211168 + 0.5 NA intron (NM_198721, intron 3 of 36) L1PA15|LINE|L1 91666 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 165.333-35 chr21 30923922 30924420 + 0.5 NA Intergenic Intergenic -42591 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 130.5-79 chr9 35430818 35431175 + 0.5 NA intron (NR_003582, intron 2 of 10) AluJo|SINE|Alu 24241 NR_003581 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 159-56 chr4 91512628 91513031 + 0.5 NA intron (NM_001145065, intron 10 of 10) L1PA16|LINE|L1 764473 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 183.167-37 chr4 35965294 35965704 + 0.5 NA Intergenic Intergenic 278440 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 189.5-24 chr17 70738467 70739035 + 0.5 NA Intergenic AluY|SINE|Alu 463428 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 195.167-41 chr8 112410582 112411042 + 0.5 NA intron (NM_052900, intron 31 of 68) intron (NM_052900, intron 31 of 68) -232681 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 119-46 chr18 2387379 2387774 + 0.5 NA Intergenic L1ME1|LINE|L1 183929 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 165.333-40 chr4 27672999 27673510 + 0.5 NA Intergenic Intergenic 455775 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 169.667-57 chr5 42407656 42408183 + 0.5 NA Intergenic Intergenic -15520 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 125-20 chr11 46642361 46642948 + 0.5 NA intron (NM_001346351, intron 3 of 17) intron (NM_001346351, intron 3 of 17) 25378 NM_001205120 9776 Hs.127403 NM_014741 ENSG00000175224 ATG13 KIAA0652|PARATARG8 autophagy related 13 protein-coding 123-11 chr11 30640391 30640686 + 0.5 NA Intergenic MER41-int|LTR|ERV1 -54185 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 201.333-5 chr10 15637895 15638360 + 0.5 NA intron (NM_001291494, intron 12 of 28) intron (NM_001291494, intron 12 of 28) 81795 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 135.5-48 chr2 189230643 189231204 + 0.5 NA Intergenic L1MB1|LINE|L1 -51162 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 142.667-96 chr7 98456115 98456487 + 0.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -55211 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 167.333-53 chr4 149775294 149775696 + 0.5 NA intron (NM_001363507, intron 2 of 13) intron (NM_001363507, intron 2 of 13) 40348 NM_001363509 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 224.833-10 chr2 156845868 156846919 + 0.5 NA Intergenic Intergenic 410014 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 136.667-91 chr6 153744681 153745170 + 0.5 NA Intergenic Intergenic -265571 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 124.167-42 chr2 8932374 8932788 + 0.5 NA intron (NR_135605, intron 1 of 11) intron (NR_135605, intron 1 of 11) 71103 NR_135604 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 170-66 chr6 167506774 167507336 + 0.5 NA Intergenic Intergenic -34265 NR_134591 105378127 Hs.58456 NR_134591 LOC105378127 - uncharacterized LOC105378127 ncRNA 129.167-77 chr7 115554365 115554999 + 0.5 NA Intergenic Intergenic 26759 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 122.833-28 chr14 79727455 79727743 + 0.5 NA intron (NR_073547, intron 18 of 20) intron (NR_073547, intron 18 of 20) 448219 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 146.5-42 chr2 53244081 53244673 + 0.5 NA Intergenic Intergenic -523406 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 197.167-38 chr3 132071312 132071987 + 0.5 NA Intergenic Intergenic -32043 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 153.833-71 chrX 80628357 80628955 + 0.5 NA Intergenic L1MA6|LINE|L1 181221 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 124-27 chr12 129009803 129010077 + 0.5 NA Intergenic Intergenic -99750 NR_104172 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 115.5-86 chr6 37445750 37446088 + 0.5 NA intron (NM_015050, intron 3 of 23) intron (NM_015050, intron 3 of 23) 12698 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 124.5-50 chr4 53338183 53338745 + 0.5 NA intron (NM_152540, intron 2 of 8) L1MDa|LINE|L1 27597 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 125.167-17 chr11 126140555 126140936 + 0.5 NA Intergenic Intergenic 70905 NM_001363516 84881 Hs.150458 NM_032795 ENSG00000165526 RPUSD4 - RNA pseudouridine synthase D4 protein-coding 174.667-51 chr5 78764729 78765418 + 0.5 NA Intergenic Tigger18a|DNA|TcMar-Tigger -116301 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 137.5-87 chr6 152243955 152244495 + 0.5 NA intron (NM_182961, intron 106 of 145) intron (NM_182961, intron 106 of 145) -58847 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 148-22 chr12 88675493 88676065 + 0.5 NA Intergenic Intergenic -95306 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 130.167-75 chr8 71328528 71328934 + 0.5 NA intron (NM_001370336, intron 5 of 17) L2c|LINE|L2 27975 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 120.667-4 chr1 44990021 44990337 + 0.5 NA Intergenic Intergenic -3457 NM_001166588 8891 Hs.533549 NM_020365 ENSG00000070785 EIF2B3 EIF-2B|EIF2Bgamma eukaryotic translation initiation factor 2B subunit gamma protein-coding 119.833-78 chr6 156866118 156866636 + 0.5 NA intron (NM_017519, intron 2 of 18) HAL1|LINE|L1 -86646 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 237.667-2 chr1 143253672 143254551 + 0.5 NA Intergenic (TGATTCCATTC)n|Simple_repeat|Simple_repeat 168481 NR_027354 645166 Hs.744183 NR_027354 LSP1P5 - LSP1 pseudogene 5 pseudo 143.167-46 chr3 97201853 97202434 + 0.5 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -237464 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 121-50 chr2 147460783 147461198 + 0.5 NA Intergenic Intergenic -383527 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 148.167-17 chr12 24338048 24338465 + 0.5 NA intron (NM_152989, intron 3 of 17) intron (NM_152989, intron 3 of 17) 114985 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 124.167-64 chr4 107855997 107856308 + 0.5 NA intron (NM_001136258, intron 1 of 6) intron (NM_001136258, intron 1 of 6) 31587 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 130.833-3 chr1 104166619 104167066 + 0.5 NA Intergenic Intergenic 93819 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 158.5-75 chr7 17857637 17858316 + 0.5 NA intron (NM_001350862, intron 9 of 25) L1M1|LINE|L1 82518 NM_001350866 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 180-14 chr16 3971251 3971771 + 0.5 NA intron (NM_001116, intron 10 of 10) intron (NM_001116, intron 10 of 10) -21067 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 200.333-35 chr6 125736128 125736649 + 0.5 NA Intergenic Intergenic -13244 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 151.167-4 chr1 171346208 171346550 + 0.5 NA Intergenic Intergenic 7483 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - DNA topoisomerase I pseudogene 1 pseudo 128-6 chr1 225264427 225264768 + 0.5 NA intron (NM_001367479, intron 47 of 85) intron (NM_001367479, intron 47 of 85) 163441 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 150.333-95 chr7 53530218 53530729 + 0.5 NA Intergenic MER34A1|LTR|ERV1 281458 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 129.167-62 chr5 84245359 84245948 + 0.5 NA intron (NM_005711, intron 2 of 10) intron (NM_005711, intron 2 of 10) 139214 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 146.333-32 chr15 72541178 72541762 + 0.5 NA intron (NM_005744, intron 2 of 13) L1ME4a|LINE|L1 -45747 NR_030359 693215 NR_030359 ENSG00000283798 MIR630 MIRN630|hsa-mir-630 microRNA 630 ncRNA 123.667-94 chr6 55512637 55512944 + 0.5 NA non-coding (NR_109867, exon 4 of 4) non-coding (NR_109867, exon 4 of 4) 66424 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 122.333-60 chr20 37307434 37307710 + 0.5 NA intron (NM_022077, intron 3 of 3) AluSz|SINE|Alu 17917 NM_022077 63905 Hs.6126 NM_022077 ENSG00000101363 MANBAL - mannosidase beta like protein-coding 127-90 chr7 2482121 2482630 + 0.5 NA Intergenic Intergenic -5992 NM_001291784 402635 NM_001291784 GRIFIN - galectin-related inter-fiber protein protein-coding 158.667-45 chr2 114616294 114616810 + 0.5 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 154975 NM_001321905 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 124.667-69 chr21 27270922 27271372 + 0.5 NA Intergenic Intergenic -304059 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 187.833-14 chr14 44589882 44590412 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 82738 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 165.167-12 chr13 70093928 70094601 + 0.5 NA intron (NM_020866, intron 1 of 10) FRAM|SINE|Alu -12949 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 139.5-53 chr5 61524111 61524521 + 0.5 NA intron (NM_020928, intron 5 of 13) intron (NM_020928, intron 5 of 13) -113444 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 136.5-72 chr5 53729900 53730250 + 0.5 NA Intergenic L1MB2|LINE|L1 89607 NR_147167 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 138.667-90 chr7 17067871 17068352 + 0.5 NA Intergenic Intergenic -186128 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 118.833-21 chr14 42779161 42779523 + 0.5 NA Intergenic Intergenic 1172486 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 131.833-59 chr6 53907910 53908303 + 0.5 NA intron (NM_018214, intron 10 of 13) intron (NM_018214, intron 10 of 13) -21876 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 141.5-27 chr13 51023188 51023682 + 0.5 NA intron (NR_003923, intron 9 of 16) L1MB3|LINE|L1 42722 NR_003923 2974 Hs.411573 NM_004129 ENSG00000123201 GUCY1B2 GC-SB2 guanylate cyclase 1 soluble subunit beta 2 (pseudogene) pseudo 143.5-60 chr4 73777566 73778018 + 0.5 NA Intergenic Intergenic 37223 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 131.667-112 chr6 79575768 79576150 + 0.5 NA Intergenic L1MEd|LINE|L1 -38529 NM_001122769 167691 Hs.21945 NM_181714 ENSG00000135338 LCA5 C6orf152 lebercilin LCA5 protein-coding 164.667-40 chr2 230005033 230005578 + 0.5 NA intron (NM_174899, intron 3 of 3) AluJo|SINE|Alu 63619 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 184.167-46 chr8 117526826 117527390 + 0.5 NA intron (NM_001282986, intron 1 of 2) intron (NM_001282986, intron 1 of 2) 6395 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 188-6 chr10 7993248 7993640 + 0.5 NA intron (NM_031923, intron 4 of 6) AluJo|SINE|Alu 59047 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 122.333-49 chr2 49862819 49863172 + 0.5 NA Intergenic Intergenic 111208 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 135.833-70 chr8 114118863 114119172 + 0.5 NA Intergenic Charlie25|DNA|hAT-Charlie -682078 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 184-12 chr12 18403662 18404418 + 0.5 NA intron (NM_001288774, intron 16 of 32) intron (NM_001288774, intron 16 of 32) 142500 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 147-25 chr17 73506513 73506996 + 0.5 NA intron (NM_001144952, intron 2 of 44) intron (NM_001144952, intron 2 of 44) -6929 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 117.5-53 chr5 24691410 24691786 + 0.5 NA Intergenic Intergenic -46620 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 129.333-13 chr11 27204712 27205111 + 0.5 NA intron (NR_125767, intron 2 of 4) L1ME4a|LINE|L1 13857 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 153.167-49 chr6 70046786 70047205 + 0.5 NA intron (NM_001858, intron 14 of 50) intron (NM_001858, intron 14 of 50) 180439 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 180-47 chr6 46012680 46013419 + 0.5 NA intron (NM_001370649, intron 1 of 5) intron (NM_001370649, intron 1 of 5) 2811 NM_016929 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 128.333-76 chr21 30230495 30230868 + 0.5 NA Intergenic Intergenic -14584 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 124.167-58 chr3 72759213 72759631 + 0.5 NA intron (NM_018130, intron 10 of 10) AluSx1|SINE|Alu 89023 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 144.667-21 chr11 62793603 62793984 + 0.5 NA intron (NM_006362, intron 19 of 20) AluSg|SINE|Alu -1022 NR_106769 102465257 NR_106769 ENSG00000274066 MIR6514 hsa-mir-6514|mir-6514 microRNA 6514 ncRNA 124.167-40 chr19 29552850 29553322 + 0.5 NA intron (NM_001146339, intron 4 of 4) L1PA10|LINE|L1 26502 NM_001146339 342865 Hs.451618 NM_001146339 ENSG00000187135 VSTM2B - V-set and transmembrane domain containing 2B protein-coding 152-9 chr1 213320620 213321026 + 0.5 NA Intergenic Intergenic 269582 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 145.333-48 chr3 78890820 78891342 + 0.5 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 128378 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 146.5-24 chr13 89421604 89422094 + 0.5 NA Intergenic Intergenic 78660 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 137.5-70 chr4 52558714 52559200 + 0.5 NA Intergenic Intergenic 97582 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 184.833-20 chr22 41296204 41296773 + 0.5 NA intron (NM_001317930, intron 1 of 15) AluSx|SINE|Alu -5037 NM_017590 23264 Hs.592188 NM_017590 ENSG00000100403 ZC3H7B ROXAN1|RoXaN zinc finger CCCH-type containing 7B protein-coding 141.167-52 chr3 156693834 156694246 + 0.5 NA exon (NM_001184718, exon 3 of 6) exon (NM_001184718, exon 3 of 6) 17376 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 128.667-72 chr21 23804809 23805189 + 0.5 NA Intergenic L2b|LINE|L2 -420164 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 150.333-34 chr13 38147342 38147807 + 0.5 NA Intergenic Intergenic -4342 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 130.333-15 chr10 130885596 130886187 + 0.5 NA Intergenic Intergenic 76777 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 129-14 chr10 57687696 57688053 + 0.5 NA Intergenic L1PB4|LINE|L1 -383315 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 115.5-61 chr3 33091037 33091289 + 0.5 NA 3' UTR (NM_001136238, exon 2 of 2) 3' UTR (NM_001136238, exon 2 of 2) 5669 NM_001079811 2720 Hs.443031 NM_000404 ENSG00000170266 GLB1 EBP|ELNR1|MPS4B galactosidase beta 1 protein-coding 124.167 chr1 26927856 26928401 + 0.5 NA intron (NM_006600, intron 2 of 8) L1M5|LINE|L1 6385 NM_006600 10726 Hs.263812 NM_006600 ENSG00000090273 NUDC HNUDC|MNUDC|NPD011 nuclear distribution C, dynein complex regulator protein-coding 121.833-7 chr10 55884765 55885293 + 0.5 NA Intergenic L1PA15|LINE|L1 -257087 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 113.167-45 chr22 44082460 44082860 + 0.5 NA intron (NM_001243385, intron 1 of 12) intron (NM_001243385, intron 1 of 12) 13543 NM_001243385 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 125.667-56 chr2 43448642 43449059 + 0.5 NA intron (NM_001083953, intron 26 of 37) L1M4c|LINE|L1 147124 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 115.667-78 chr3 160295503 160295790 + 0.5 NA intron (NM_001190242, intron 11 of 18) L1MB1|LINE|L1 70010 NM_001168214 401097 Hs.729755 NM_001168214 ENSG00000180044 C3orf80 - chromosome 3 open reading frame 80 protein-coding 135-53 chr20 55082538 55082887 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -340331 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 118-41 chr15 68187977 68188232 + 0.5 NA 3' UTR (NM_001320687, exon 15 of 15) 3' UTR (NM_001320687, exon 15 of 15) 18006 NM_033429 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 129.333-31 chr14 64931825 64932340 + 0.5 NA intron (NM_001202559, intron 3 of 13) intron (NM_001202559, intron 3 of 13) 10663 NR_046320 2877 Hs.2704 NM_002083 ENSG00000176153 GPX2 GI-GPx|GPRP|GPRP-2|GPx-2|GPx-GI|GSHPX-GI|GSHPx-2 glutathione peroxidase 2 protein-coding 119-35 chr15 79188532 79188821 + 0.5 NA Intergenic MIR|SINE|MIR -21112 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 171.833-49 chr9 34383754 34384272 + 0.5 NA intron (NM_032596, intron 2 of 6) L2c|LINE|L2 -2424 NM_147168 84688 Hs.50334 NM_032596 ENSG00000164972 C9orf24 CBE1|NYD-SP22|SMRP1|bA573M23.4 chromosome 9 open reading frame 24 protein-coding 200.833-11 chr17 69969594 69970168 + 0.5 NA intron (NR_110875, intron 2 of 4) intron (NR_110875, intron 2 of 4) 8174 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 144.833-47 chr3 74927005 74927414 + 0.5 NA Intergenic Intergenic -287267 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 165.5-50 chr6 40369058 40369558 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR -9029 NR_160958 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 125-31 chr15 85658289 85658724 + 0.5 NA intron (NM_001270546, intron 4 of 28) intron (NM_001270546, intron 4 of 28) 38556 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 154.5-9 chr11 75892094 75892473 + 0.5 NA intron (NM_003369, intron 5 of 14) LTR79|LTR|ERVL 77073 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 225-41 chr9 113292201 113292904 + 0.5 NA non-coding (NR_136265, exon 14 of 14) non-coding (NR_136265, exon 14 of 14) 6313 NM_001371234 135-70 chr4 47625587 47626014 + 0.5 NA intron (NM_006587, intron 17 of 21) MIRb|SINE|MIR -26869 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 124.167-75 chr5 129713696 129714234 + 0.5 NA intron (NM_133638, intron 21 of 22) intron (NM_133638, intron 21 of 22) -34129 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 131.667 chr1 23924672 23925092 + 0.5 NA Intergenic MER31A|LTR|ERV1 -4188 NR_039615 100616492 NR_039615 ENSG00000264926 MIR378F mir-378f microRNA 378f ncRNA 147.667-28 chr18 7550394 7551082 + 0.5 NA Intergenic Intergenic -16578 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 118.333-24 chr12 60711999 60712254 + 0.5 NA Intergenic L1M3de|LINE|L1 1022756 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 152.167-39 chr22 39776425 39776881 + 0.5 NA intron (NM_152512, intron 5 of 6) intron (NM_152512, intron 5 of 6) 117107 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 132.833-52 chr4 160058277 160058800 + 0.5 NA Intergenic Intergenic -280754 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 160.167-64 chr9 130625489 130626111 + 0.5 NA promoter-TSS (NR_106915) promoter-TSS (NR_106915) -497 NR_106915 102465515 NR_106915 ENSG00000277713 MIR6856 hsa-mir-6856 microRNA 6856 ncRNA 122.667-64 chr3 67963108 67963663 + 0.5 NA Intergenic L1ME3F|LINE|L1 -28207 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 142.333-72 chr3 150972709 150973135 + 0.5 NA promoter-TSS (NM_001195794) promoter-TSS (NM_001195794) 77 NM_001195794 7401 Hs.745448 NM_052995 ENSG00000163646 CLRN1 RP61|USH3|USH3A clarin 1 protein-coding 115-60 chr4 182200276 182200761 + 0.5 NA Intergenic Intergenic 31225 NR_031640 100302270 NR_031640 ENSG00000221227 MIR1305 MIRN1305|hsa-mir-1305|mir-1305 microRNA 1305 ncRNA 121.5-113 chr9 35855945 35856285 + 0.5 NA 3' UTR (NM_001042590, exon 13 of 13) 3' UTR (NM_001042590, exon 13 of 13) 14286 NM_001004487 392309 Hs.527480 NM_001004487 ENSG00000168828 OR13J1 OR9-2 olfactory receptor family 13 subfamily J member 1 protein-coding 120.833-47 chr3 95816795 95817154 + 0.5 NA Intergenic MER4E1|LTR|ERV1 -133781 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 166.333-28 chr17 49291919 49292394 + 0.5 NA 3' UTR (NM_001145365, exon 6 of 6) 3' UTR (NM_001145365, exon 6 of 6) -3702 NR_106745 102465137 NR_106745 ENSG00000273500 MIR6129 hsa-mir-6129 microRNA 6129 ncRNA 119.334-5 chr7 41806195 41806782 + 0.5 NA Intergenic AluSz|SINE|Alu -103398 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 133.333-125 chr9 28832912 28833235 + 0.5 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 30633 NR_030597 100126310 NR_030597 ENSG00000215966 MIR876 MIRN876|hsa-mir-876|mir-876 microRNA 876 ncRNA 115-16 chr10 127805532 127806123 + 0.5 NA Intergenic L2c|LINE|L2 68642 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 140.833-51 chr6 116482787 116483333 + 0.5 NA Intergenic Intergenic 21685 NM_001276460 441168 Hs.381220 NM_001010919 ENSG00000188820 CALHM6 C6orf187|FAM26F|INAM|dJ93H18.5 calcium homeostasis modulator family member 6 protein-coding 114.167-59 chr21 16566836 16567218 + 0.5 NA intron (NR_136547, intron 2 of 2) intron (NR_136547, intron 2 of 2) -21571 NR_136548 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 129.5-22 chr14 54195928 54196255 + 0.5 NA Intergenic Intergenic -200777 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 114.167-54 chr2 236347250 236347646 + 0.5 NA intron (NR_073043, intron 15 of 19) L1PB1|LINE|L1 -83103 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 145.5-76 chr8 78857213 78857862 + 0.5 NA Intergenic Intergenic 20008 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 139.167-48 chr20 18709657 18710187 + 0.5 NA intron (NM_080820, intron 4 of 5) intron (NM_080820, intron 4 of 5) -11214 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 120.667-64 chr2 176064305 176064635 + 0.5 NA Intergenic Intergenic 19492 NM_001080458 344191 Hs.452341 NM_001080458 ENSG00000174279 EVX2 EVX-2 even-skipped homeobox 2 protein-coding 206-13 chr15 75435985 75436670 + 0.5 NA intron (NM_001145357, intron 1 of 20) AluJo|SINE|Alu 15363 NM_001145358 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 210-20 chr21 32280031 32280704 + 0.5 NA Intergenic MIRc|SINE|MIR -1318 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 140.667-51 chr22 29936238 29936707 + 0.5 NA intron (NM_153051, intron 1 of 18) intron (NM_153051, intron 1 of 18) 53298 NM_021090 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 128.333-86 chr3 194251682 194252152 + 0.5 NA intron (NR_125402, intron 2 of 3) intron (NR_125402, intron 2 of 3) -1764 NR_125403 100505920 Hs.436654 NR_125403 ENSG00000225742 LINC02036 - long intergenic non-protein coding RNA 2036 ncRNA 131-66 chr7 114083745 114084154 + 0.5 NA Intergenic Intergenic -2378 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 158.667-19 chr11 126465593 126466112 + 0.5 NA intron (NM_001301097, intron 5 of 15) intron (NM_001301097, intron 5 of 15) 59765 NM_001254759 6484 Hs.591947 NM_006278 ENSG00000110080 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 124.833-73 chr5 30235410 30235838 + 0.5 NA Intergenic MER57-int|LTR|ERV1 355064 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 128-45 chr2 51754770 51755182 + 0.5 NA intron (NR_135237, intron 5 of 10) LTR78|LTR|ERV1 -615672 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 160.833-10 chr10 94926571 94927001 + 0.5 NA Intergenic MER4-int|LTR|ERV1 -11872 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 113.5-90 chr8 131038353 131038650 + 0.5 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 2408 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 162.5-29 chr2 34975753 34976504 + 0.5 NA Intergenic Intergenic 298571 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 124.167-25 chr14 79804257 79804532 + 0.5 NA intron (NR_073547, intron 18 of 20) intron (NR_073547, intron 18 of 20) -407025 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 123-54 chr20 25204027 25204355 + 0.5 NA intron (NM_001322390, intron 2 of 14) intron (NM_001322390, intron 2 of 14) -7299 NR_109994 101926889 Hs.585997 NR_109994 LOC101926889 - uncharacterized LOC101926889 ncRNA 117-123 chr8 127449928 127450345 + 0.5 NA intron (NR_024393, intron 4 of 4) MLT1K|LTR|ERVL-MaLR 32003 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 146.667-66 chr4 79340049 79340546 + 0.5 NA Intergenic L1MA4A|LINE|L1 -14236 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 169.667-13 chr11 92721172 92722017 + 0.5 NA intron (NM_001008781, intron 3 of 24) intron (NM_001008781, intron 3 of 24) 194034 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 138.5-70 chr7 5720702 5721116 + 0.5 NA intron (NM_207111, intron 9 of 16) intron (NM_207111, intron 9 of 16) -8999 NR_106934 102466203 NR_106934 ENSG00000283419 MIR6874 hsa-mir-6874 microRNA 6874 ncRNA 185.667-24 chr17 51712361 51712800 + 0.5 NA intron (NM_001082533, intron 5 of 9) intron (NM_001082533, intron 5 of 9) 277153 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 132.333-47 chr18 50858610 50859000 + 0.5 NA Intergenic L1MB2|LINE|L1 -20313 NM_002396 4200 Hs.233119 NM_002396 ENSG00000082212 ME2 ODS1 malic enzyme 2 protein-coding 125.5-61 chr5 7740899 7741357 + 0.5 NA intron (NM_020546, intron 14 of 24) L1M5|LINE|L1 110005 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 130.167-76 chr8 103815533 103815998 + 0.5 NA intron (NM_001348495, intron 4 of 24) intron (NM_001348495, intron 4 of 24) -3455 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 160.667-11 chr1 205593741 205594438 + 0.5 NA intron (NM_181644, intron 7 of 9) intron (NM_181644, intron 7 of 9) -24784 NR_152721 284578 Hs.537020 NR_027086 MFSD4A-AS1 - MFSD4A antisense RNA 1 ncRNA 115.333-25 chr13 51069976 51070347 + 0.5 NA Intergenic Intergenic -4004 NR_003923 2974 Hs.411573 NM_004129 ENSG00000123201 GUCY1B2 GC-SB2 guanylate cyclase 1 soluble subunit beta 2 (pseudogene) pseudo 140.333-26 chr17 22691346 22691786 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 168455 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 118.5-84 chr5 145532549 145532923 + 0.5 NA Intergenic L1MA9|LINE|L1 302606 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 219.667-28 chr6 86628799 86629540 + 0.5 NA Intergenic Intergenic -308359 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 126.667-32 chr18 36276957 36277464 + 0.5 NA Intergenic L1MEd|LINE|L1 -20503 NM_001281740 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 228.5-4 chr10 77426533 77426990 + 0.5 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 75889 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 129.333-27 chr14 43734035 43734385 + 0.5 NA Intergenic Intergenic 773073 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 141.333-11 chr10 45498452 45499130 + 0.5 NA intron (NM_001282866, intron 2 of 7) L1MB2|LINE|L1 36580 NM_001282866 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 120.333-76 chr3 133143602 133143884 + 0.5 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 18922 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 158.167-9 chr14 32701005 32701406 + 0.5 NA intron (NM_004274, intron 9 of 13) L4_A_Mam|LINE|RTE-X -237674 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 184.167-33 chr3 148093683 148094279 + 0.5 NA Intergenic Intergenic 15822 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 147.333-13 chr11 84183028 84183521 + 0.5 NA intron (NM_001142700, intron 1 of 19) L1MC1|LINE|L1 90006 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 113.167-42 chr20 1437726 1438007 + 0.5 NA Intergenic Kanga1a|DNA|TcMar-Tc2 29826 NM_001206736 55968 Hs.12865 NM_016143 ENSG00000088833 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 cofactor protein-coding 129.333-93 chr8 13159236 13159617 + 0.5 NA intron (NM_001348082, intron 5 of 16) intron (NM_001348082, intron 5 of 16) -26137 NM_001348084 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 154.167-18 chr14 26101354 26101723 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 451892 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 201.167-30 chr7 20412723 20413227 + 0.5 NA 3' UTR (NM_002214, exon 14 of 14) 3' UTR (NM_002214, exon 14 of 14) -81213 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 143.667-34 chr13 66771946 66772357 + 0.5 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -53018 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 138.333-13 chr1 229660868 229661312 + 0.5 NA TTS (NM_001314021) TTS (NM_001314021) 34843 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 114.333-92 chr4 10111883 10112312 + 0.5 NA intron (NM_017491, intron 2 of 14) MER20|DNA|hAT-Charlie 4702 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 214.5-34 chr6 73079006 73079881 + 0.5 NA intron (NM_001160132, intron 5 of 13) intron (NM_001160132, intron 5 of 13) 64071 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 175-13 chr10 106533897 106534659 + 0.5 NA Intergenic MIR|SINE|MIR 394113 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 115.5-108 chr9 88681080 88681474 + 0.5 NA Intergenic Intergenic 64628 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 147.333-20 chr12 125418599 125418986 + 0.5 NA intron (NM_052907, intron 3 of 8) intron (NM_052907, intron 3 of 8) 92176 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 122.167 chr1 63155198 63155643 + 0.5 NA Intergenic Intergenic -142949 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 126.833-10 chr1 224372112 224372478 + 0.5 NA intron (NM_001277200, intron 4 of 4) intron (NM_001277200, intron 4 of 4) 15416 NR_102347 29097 Hs.445890 NM_014184 ENSG00000143771 CNIH4 CNIH-4|CNIH2|HSPC163 cornichon family AMPA receptor auxiliary protein 4 protein-coding 116.833-53 chr5 111849260 111849534 + 0.5 NA intron (NM_001142474, intron 2 of 3) L2c|LINE|L2 -63111 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 152.833-76 chrX 84677132 84677549 + 0.5 NA Intergenic L1MA6|LINE|L1 -174887 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 116.667-41 chr15 97615547 97616038 + 0.5 NA Intergenic Intergenic -55094 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 286.5-16 chr7 95464452 95465500 + 0.5 NA Intergenic Intergenic -20925 NM_145872 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 120.5-77 chr6 135406669 135407131 + 0.5 NA intron (NM_017651, intron 20 of 27) intron (NM_017651, intron 20 of 27) 90840 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 149.167-33 chr21 15465791 15466176 + 0.5 NA Intergenic Intergenic -263951 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 147.5-6 chr1 168254207 168254649 + 0.5 NA Intergenic AluSp|SINE|Alu -6998 NR_026844 84832 Hs.537067 NR_026844 ENSG00000214262 ANKRD36BP1 ANKRD26L1|ANKRD36BL1 ankyrin repeat domain 36B pseudogene 1 pseudo 126.5-91 chr9 108752854 108753192 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR 102963 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 122.667-68 chr3 122498461 122498855 + 0.5 NA intron (NR_026698, intron 1 of 14) L1MB8|LINE|L1 16281 NM_002264 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 115.167-24 chr11 75787722 75788143 + 0.5 NA intron (NM_032564, intron 2 of 7) intron (NM_032564, intron 2 of 7) 19154 NM_032564 84649 Hs.129798 NM_032564 ENSG00000062282 DGAT2 ARAT|GS1999FULL|HMFN1045 diacylglycerol O-acyltransferase 2 protein-coding 146.667-34 chr14 67457497 67458006 + 0.5 NA Intergenic Intergenic -15821 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 148.167-86 chr9 6084943 6085610 + 0.5 NA Intergenic HERVI-int|LTR|ERV1 -69652 NM_001243203 26953 Hs.167496 NM_012416 ENSG00000137040 RANBP6 - RAN binding protein 6 protein-coding 131.333-17 chr11 39544812 39545178 + 0.5 NA Intergenic Intergenic 748135 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 117.5-49 chr4 42992079 42992347 + 0.5 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 98947 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 192.5-27 chr2 235180778 235181346 + 0.5 NA Intergenic L1MB3|LINE|L1 153327 NM_001371306 141.333-21 chr12 45019747 45020049 + 0.5 NA intron (NM_001004329, intron 3 of 3) L1ME3A|LINE|L1 31201 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 137.5-99 chrX 95303959 95304407 + 0.5 NA Intergenic L1M4|LINE|L1 -240957 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 183.667-80 chr8 82570188 82570651 + 0.5 NA Intergenic Intergenic -341685 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 189.167-28 chr2 180447215 180447717 + 0.5 NA Intergenic LTR16A|LTR|ERVL -244638 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 136-12 chr10 120397682 120398009 + 0.5 NA Intergenic L1ME3A|LINE|L1 -42622 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 124-38 chr15 57556177 57556526 + 0.5 NA Intergenic Intergenic -35553 NR_104371 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 166.333-5 chr10 9347827 9348532 + 0.5 NA Intergenic L1MCa|LINE|L1 -52586 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 115.667-36 chr15 75475773 75476203 + 0.5 NA intron (NM_002833, intron 9 of 12) AluJb|SINE|Alu -20173 NM_001145357 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 129.333-23 chr13 44284005 44284357 + 0.5 NA Intergenic Intergenic -87981 NR_107046 102465876 NR_107046 ENSG00000276319 MIR8079 hsa-mir-8079 microRNA 8079 ncRNA 135.167-63 chr22 38633415 38633813 + 0.5 NA intron (NM_001013647, intron 6 of 16) AluSc|SINE|Alu 22778 NM_001291030 646851 Hs.542707 NM_001013647 ENSG00000184949 FAM227A - family with sequence similarity 227 member A protein-coding 159.833-3 chr1 62681748 62682357 + 0.5 NA intron (NM_001367561, intron 1 of 49) L2|LINE|L2 6316 NM_001272000 85440 Hs.744927 NM_033407 ENSG00000116641 DOCK7 EIEE23|ZIR2 dedicator of cytokinesis 7 protein-coding 148.167-45 chr20 5589719 5590058 + 0.5 NA intron (NM_019593, intron 4 of 19) intron (NM_019593, intron 4 of 19) 21118 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 129.333-110 chr9 102517974 102518464 + 0.5 NA Intergenic Intergenic -1418 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 125.167-4 chr1 181885744 181886170 + 0.5 NA Intergenic L1P2|LINE|L1 175755 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 120.333-77 chr3 137048388 137048706 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 90564 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 133.5-21 chr13 66150865 66151343 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -67146 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 239.833-13 chr2 35883042 35883786 + 0.5 NA Intergenic Intergenic 412009 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 143.667-38 chr14 59043743 59044070 + 0.5 NA Intergenic L1MEc|LINE|L1 -144761 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 180.333-36 chr20 33825589 33826055 + 0.5 NA intron (NM_176812, intron 1 of 4) intron (NM_176812, intron 1 of 4) 14474 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 138-54 chr2 95033607 95033940 + 0.5 NA intron (NM_022440, intron 1 of 1) AluJr|SINE|Alu 8065 NM_002371 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 147.5-31 chr14 81739110 81739608 + 0.5 NA intron (NR_146498, intron 2 of 2) intron (NR_146498, intron 2 of 2) 3779 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 125.667-118 chr8 86055102 86055591 + 0.5 NA intron (NM_033126, intron 2 of 2) intron (NM_033126, intron 2 of 2) 14322 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 125.833-74 chr5 180544302 180544604 + 0.5 NA intron (NM_001370474, intron 1 of 10) intron (NM_001370474, intron 1 of 10) 2799 NM_001370474 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 127.667-89 chr7 104069057 104069545 + 0.5 NA Intergenic L1MEh|LINE|L1 -79643 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 132-3 chr1 77723984 77724513 + 0.5 NA intron (NM_015017, intron 12 of 24) Charlie15a|DNA|hAT-Charlie 35604 NM_201626 23032 Hs.480597 NM_015017 ENSG00000077254 USP33 VDU1 ubiquitin specific peptidase 33 protein-coding 141-21 chr14 32607921 32608392 + 0.5 NA intron (NM_004274, intron 7 of 13) intron (NM_004274, intron 7 of 13) 278858 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 159.667-88 chr7 130567696 130568093 + 0.5 NA intron (NM_001290033, intron 9 of 19) L1PB2|LINE|L1 24441 NR_024086 53844 Hs.6421 NR_024086 COPG2IT1 CIT1|COPG2AS|DKFZP761N09121|NCRNA00170 COPG2 imprinted transcript 1 ncRNA 115.333-20 chr12 107067099 107067433 + 0.5 NA intron (NM_004075, intron 1 of 12) MER58C|DNA|hAT-Charlie 26283 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 DSPD|PHLL1 cryptochrome circadian regulator 1 protein-coding 135.667-55 chr2 99706645 99706977 + 0.5 NA intron (NM_001025108, intron 10 of 23) intron (NM_001025108, intron 10 of 23) -216794 NM_001321454 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 121.5-95 chr7 18550554 18551018 + 0.5 NA intron (NM_001204147, intron 1 of 9) L2a|LINE|L2 41516 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 132-52 chr3 86418125 86418432 + 0.5 NA Intergenic Intergenic -63665 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 126.333-13 chr10 68017411 68017709 + 0.5 NA intron (NM_001278185, intron 8 of 23) AluSx|SINE|Alu -6677 NR_131184 100009667 NR_131184 POU5F1P5 Oct4-pg5 POU class 5 homeobox 1 pseudogene 5 pseudo 126.167-66 chr4 78632650 78632987 + 0.5 NA Intergenic MER50|LTR|ERV1 -13176 NR_038307 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 126.667-19 chr14 50289383 50289684 + 0.5 NA intron (NM_024884, intron 4 of 9) LTR54|LTR|ERV1 10413 NR_039726 100616261 NR_039726 ENSG00000264712 MIR4504 - microRNA 4504 ncRNA 152.5-7 chr11 34050041 34050482 + 0.5 NA Intergenic L2a|LINE|L2 -1470 NM_005898 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 146-24 chr15 83801693 83802135 + 0.5 NA intron (NM_207517, intron 4 of 29) L1M6|LINE|L1 147791 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 145-37 chr17 79302809 79303159 + 0.5 NA intron (NM_001082575, intron 3 of 14) AluJb|SINE|Alu 213164 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 144.833-65 chr6 73086139 73086609 + 0.5 NA intron (NM_001160132, intron 5 of 13) intron (NM_001160132, intron 5 of 13) 57140 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 142.333-60 chr20 15232059 15232543 + 0.5 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 35461 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 116.167-28 chr17 59892184 59892549 + 0.5 NA promoter-TSS (NM_001272060) promoter-TSS (NM_001272060) 577 NM_016261 51174 Hs.463638 NM_016261 ENSG00000108423 TUBD1 TUBD tubulin delta 1 protein-coding 146.667-33 chr14 66865896 66866286 + 0.5 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) -323349 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 215-23 chr3 42619895 42620480 + 0.5 NA intron (NM_001349126, intron 6 of 18) intron (NM_001349126, intron 6 of 18) -19109 NM_001201572 9117 Hs.445892 NM_004206 ENSG00000093183 SEC22C SEC22L3 SEC22 homolog C, vesicle trafficking protein protein-coding 136.167-10 chr10 11302952 11303263 + 0.5 NA intron (NM_001025076, intron 9 of 13) L3|LINE|CR1 41567 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 128.333-48 chr17 63564856 63565282 + 0.5 NA intron (NR_073585, intron 1 of 7) FRAM|SINE|Alu 14592 NM_005828 10238 Hs.410596 NM_005828 ENSG00000136485 DCAF7 AN11|HAN11|SWAN-1|WDR68 DDB1 and CUL4 associated factor 7 protein-coding 144.833-12 chr11 16716834 16717475 + 0.5 NA intron (NM_001367872, intron 1 of 16) intron (NM_001367872, intron 1 of 16) 21323 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 183.833-47 chrX 9595594 9596259 + 0.5 NA intron (NM_001139468, intron 3 of 17) intron (NM_001139468, intron 3 of 17) 130868 NM_005647 6907 Hs.495656 NM_005647 ENSG00000101849 TBL1X EBI|SMAP55|TBL1 transducin beta like 1 X-linked protein-coding 122.5-58 chr22 44078374 44078690 + 0.5 NA intron (NM_001243385, intron 1 of 12) MLT1D|LTR|ERVL-MaLR 9415 NM_001243385 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 180.5-38 chr3 190482601 190483302 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR -31134 NR_157352 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 159.833-45 chr7 43694695 43695239 + 0.5 NA intron (NR_163914, intron 1 of 8) L2a|LINE|L2 34556 NM_001371309 154.833-35 chr2 187190025 187190461 + 0.5 NA Intergenic Intergenic 258009 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 237.833-8 chr22 37214825 37215680 + 0.5 NA Intergenic FLAM_C|SINE|Alu -2775 NM_001051 6753 Hs.225995 NM_001051 ENSG00000278195 SSTR3 SS-3-R|SS3-R|SS3R|SSR-28 somatostatin receptor 3 protein-coding 127-13 chr11 34908512 34908970 + 0.5 NA intron (NM_015957, intron 1 of 6) intron (NM_015957, intron 1 of 6) -7389 NM_001135024 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 117-31 chr14 45667369 45667709 + 0.5 NA Intergenic Intergenic 48063 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 136.833-25 chr15 71656121 71656448 + 0.5 NA intron (NM_001286429, intron 1 of 11) L1MC4a|LINE|L1 35255 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 160.333-11 chr11 100665344 100665855 + 0.5 NA Intergenic Intergenic -21689 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 184.333-27 chr2 64820470 64820859 + 0.5 NA Intergenic AluJr4|SINE|Alu 42967 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 162.5-66 chr6 153697336 153697691 + 0.5 NA Intergenic Intergenic -312983 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 206.833-18 chr3 162059848 162060391 + 0.5 NA Intergenic THE1D-int|LTR|ERVL-MaLR 563311 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 117.833-76 chr7 55340250 55340793 + 0.5 NA Intergenic AluSc8|SINE|Alu -24927 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 160.333-38 chr3 101357127 101357571 + 0.5 NA intron (NM_020654, intron 11 of 23) intron (NM_020654, intron 11 of 23) -36774 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 116.833-17 chr15 56618859 56619181 + 0.5 NA Intergenic L1MEc|LINE|L1 115066 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 118-15 chr10 59252169 59252511 + 0.5 NA intron (NM_001347852, intron 12 of 12) intron (NM_001347852, intron 12 of 12) 74873 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 187.167-31 chr5 55413407 55413983 + 0.5 NA intron (NM_015360, intron 23 of 26) intron (NM_015360, intron 23 of 26) 95231 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 160.333-18 chr15 33676011 33676618 + 0.5 NA intron (NM_001243996, intron 38 of 102) MLT1D|LTR|ERVL-MaLR -292183 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 177.833-49 chr8 124274610 124275146 + 0.5 NA Intergenic AluSx|SINE|Alu -27480 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 142.167-90 chrX 69305992 69306409 + 0.5 NA Intergenic MIRb|SINE|MIR 126643 NR_103715 100996279 NR_103715 ENSG00000215162 LINC00269 CXorf62|NCRNA00269 long intergenic non-protein coding RNA 269 ncRNA 117.667-119 chr8 17904500 17904887 + 0.5 NA Intergenic Intergenic -9155 NM_201552 2267 Hs.491143 NM_004467 ENSG00000104760 FGL1 HFREP1|HP-041|HPS|LFIRE-1|LFIRE1 fibrinogen like 1 protein-coding 125.667-114 chr7 84674523 84675199 + 0.5 NA Intergenic MLT2D|LTR|ERVL 142385 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 155.167-20 chr17 29664401 29664835 + 0.5 NA intron (NM_033389, intron 10 of 14) AluJb|SINE|Alu -43195 NM_032854 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 155.333-76 chr4 106676938 106677343 + 0.5 NA Intergenic Intergenic 243516 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 148.5-12 chr11 32753195 32753648 + 0.5 NA intron (NM_001008391, intron 2 of 17) AluJb|SINE|Alu 41237 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 132.667-60 chr3 31917173 31917763 + 0.5 NA intron (NM_001174060, intron 1 of 10) intron (NM_001174060, intron 1 of 10) -64282 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 145.333-54 chr3 183546512 183546906 + 0.5 NA intron (NM_130446, intron 1 of 6) intron (NM_130446, intron 1 of 6) -2026 NR_046687 100874019 NR_046687 ENSG00000242522 KLHL6-AS1 - KLHL6 antisense RNA 1 ncRNA 129.333-15 chr11 29277344 29277723 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -316880 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 140.834-2 chr2 208385919 208386549 + 0.5 NA intron (NM_001309516, intron 1 of 12) intron (NM_001309516, intron 1 of 12) -20596 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 118.833-69 chr8 106684631 106684944 + 0.5 NA intron (NM_181354, intron 4 of 13) intron (NM_181354, intron 4 of 13) 26979 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 137.333-113 chr9 112856926 112857273 + 0.5 NA intron (NM_001012994, intron 7 of 8) intron (NM_001012994, intron 7 of 8) 33777 NM_033051 57864 Hs.512668 NM_033051 ENSG00000119457 SLC46A2 Ly110|TSCOT solute carrier family 46 member 2 protein-coding 121.167-54 chr3 65127592 65127988 + 0.5 NA Intergenic Intergenic -439790 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 159-66 chr9 8670951 8671315 + 0.5 NA intron (NM_130392, intron 1 of 30) (AATAA)n|Simple_repeat|Simple_repeat 62813 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 131-26 chr18 44634515 44634916 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -45358 NM_001130110 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 131.667-44 chr15 101440834 101441117 + 0.5 NA intron (NM_138325, intron 2 of 13) intron (NM_138325, intron 2 of 13) 48732 NM_138322 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 126.5-53 chr21 35060816 35061487 + 0.5 NA Intergenic L1PA17|LINE|L1 -11853 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 121.333-50 chr2 88702945 88703256 + 0.5 NA intron (NM_144563, intron 3 of 8) THE1A-int|LTR|ERVL-MaLR 11427 NM_144563 22934 Hs.469264 NM_144563 ENSG00000153574 RPIA RPI|RPIAD ribose 5-phosphate isomerase A protein-coding 159.167-23 chr15 71140243 71140624 + 0.5 NA Intergenic MSTB1|LTR|ERVL-MaLR -1016 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 175.167-42 chr6 66598048 66598506 + 0.5 NA Intergenic Intergenic 810398 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 133.167-43 chr3 189692620 189692931 + 0.5 NA intron (NM_003722, intron 1 of 13) intron (NM_003722, intron 1 of 13) 61386 NM_001114978 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 193.833-21 chr18 11844874 11845544 + 0.5 NA intron (NM_001369387, intron 5 of 11) intron (NM_001369387, intron 5 of 11) -6204 NM_020412 57132 Hs.656244 NM_020412 ENSG00000255112 CHMP1B C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2 charged multivesicular body protein 1B protein-coding 114.167-70 chr4 76384941 76385255 + 0.5 NA intron (NM_001042784, intron 3 of 23) intron (NM_001042784, intron 3 of 23) 22207 NM_001042784 339965 Hs.529680 NM_178555 ENSG00000163749 CCDC158 - coiled-coil domain containing 158 protein-coding 160.333-63 chr8 109918600 109918967 + 0.5 NA Intergenic Intergenic 56988 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 126.834-6 chr8 65803078 65803682 + 0.5 NA intron (NM_001242318, intron 1 of 12) intron (NM_001242318, intron 1 of 12) -14323 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 139.5-29 chr2 109324196 109324559 + 0.5 NA intron (NM_001099289, intron 1 of 9) L1MB7|LINE|L1 -10752 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 191.833-19 chr3 89624979 89625586 + 0.5 NA Intergenic Intergenic 517661 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 191.5-33 chr3 112082557 112083077 + 0.5 NA Intergenic Intergenic -3518 NM_001171747 79669 Hs.434247 NM_024616 ENSG00000114529 C3orf52 TTMP chromosome 3 open reading frame 52 protein-coding 159.167-24 chr16 4087722 4088140 + 0.5 NA intron (NM_001116, intron 2 of 10) SVA_A|Retroposon|SVA 28511 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 156.667-47 chr18 30209946 30210327 + 0.5 NA Intergenic Intergenic -88774 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 185.5-50 chr8 78315794 78316317 + 0.5 NA Intergenic Intergenic -200285 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 127-50 chr2 103754678 103755291 + 0.5 NA Intergenic L1M4b|LINE|L1 653348 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 204.667-31 chr3 3108483 3109443 + 0.5 NA intron (NM_175725, intron 1 of 10) intron (NM_175725, intron 1 of 10) 1411 NM_001243099 3568 Hs.68876 NM_000564 ENSG00000091181 IL5RA CD125|CDw125|HSIL5R3|IL5R interleukin 5 receptor subunit alpha protein-coding 145-17 chr11 34519001 34519352 + 0.5 NA Intergenic MamSINE1|SINE|tRNA-RTE -5382 NM_001243080 2001 Hs.11713 NM_001422 ENSG00000135374 ELF5 ESE2 E74 like ETS transcription factor 5 protein-coding 184.833-31 chr7 14755988 14756391 + 0.5 NA intron (NM_001350722, intron 3 of 25) intron (NM_001350722, intron 3 of 25) 85261 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 115.167-110 chr8 135602498 135602847 + 0.5 NA intron (NM_006558, intron 6 of 8) intron (NM_006558, intron 6 of 8) 145216 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 149.667-82 chr9 96598589 96599128 + 0.5 NA intron (NR_147239, intron 1 of 14) L1ME4b|LINE|L1 20985 NM_033331 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 115.333-39 chr16 24595149 24595551 + 0.5 NA Intergenic L1MB7|LINE|L1 -14855 NM_001351850 27327 Hs.655057 NM_014494 ENSG00000090905 TNRC6A CAGH26|FAME6|GW1|GW182|TNRC6 trinucleotide repeat containing adaptor 6A protein-coding 200.167-6 chr10 16292478 16293050 + 0.5 NA Intergenic L1MA4A|LINE|L1 -144179 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 121.333-31 chr14 83410607 83411065 + 0.5 NA Intergenic L1MEg|LINE|L1 768204 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 146.167-74 chr8 111375031 111375560 + 0.5 NA Intergenic MER67D|LTR|ERV1 -1344 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 137.5-89 chr7 35285012 35285322 + 0.5 NA Intergenic Intergenic -28688 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 173.833-19 chr12 113383368 113383727 + 0.5 NA intron (NM_173542, intron 6 of 11) AluSq|SINE|Alu 20340 NM_006843 10993 Hs.439023 NM_006843 ENSG00000135094 SDS SDH serine dehydratase protein-coding 195.333-35 chr3 103917307 103917787 + 0.5 NA Intergenic Intergenic -393431 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 176.333-23 chr14 56508009 56508537 + 0.5 NA Intergenic Tigger3c|DNA|TcMar-Tigger -6058 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 133.167-71 chr9 86810713 86811173 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 136563 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 127.5-21 chr13 72541116 72541615 + 0.5 NA Intergenic Intergenic 186264 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 145.167-80 chr9 78962348 78962762 + 0.5 NA Intergenic Intergenic 183111 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 151.167-51 chr8 10309293 10309836 + 0.5 NA intron (NM_001199729, intron 5 of 6) intron (NM_001199729, intron 5 of 6) -165001 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 113.667-129 chr8 118181653 118182065 + 0.5 NA intron (NR_146234, intron 4 of 5) MIRb|SINE|MIR -70040 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 205.667-49 chr5 142147713 142148276 + 0.5 NA intron (NM_030571, intron 7 of 7) intron (NM_030571, intron 7 of 7) 39215 NM_030571 80762 Hs.9788 NM_030571 ENSG00000131507 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 172.167-16 chr14 77237441 77238157 + 0.5 NA intron (NM_020431, intron 9 of 23) intron (NM_020431, intron 9 of 23) -28419 NR_031661 100302236 NR_031661 ENSG00000221754 MIR1260A MIR1260|MIRN1260|hsa-mir-1260|hsa-mir-1260a|mir-1260a microRNA 1260a ncRNA 210.833 chr1 113598645 113599217 + 0.5 NA intron (NM_001142782, intron 6 of 20) L1PA3|LINE|L1 160224 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 141.5-91 chrX 41986164 41986513 + 0.5 NA Intergenic L1MA8|LINE|L1 -62784 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 115.5-107 chr9 81747776 81748081 + 0.5 NA intron (NR_109772, intron 1 of 3) intron (NR_109772, intron 1 of 3) 58215 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 136-86 chr9 31319812 31320377 + 0.5 NA Intergenic MER52A|LTR|ERV1 61396 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 163.5-52 chr4 91042583 91043088 + 0.5 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 807804 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 152.167-79 chr8 139193268 139193784 + 0.5 NA Intergenic L1MC5a|LINE|L1 -279485 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 121.167-20 chr12 63762102 63762609 + 0.5 NA Intergenic L1ME1|LINE|L1 -17554 NM_014254 10329 Hs.216386 NM_014254 ENSG00000118600 RXYLT1 HP10481|MDDGA10|TMEM5 ribitol xylosyltransferase 1 protein-coding 149.5-37 chr20 54606193 54606723 + 0.5 NA intron (NM_018431, intron 5 of 7) intron (NM_018431, intron 5 of 7) 130865 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 153.333-85 chr8 131851546 131851920 + 0.5 NA Intergenic L2a|LINE|L2 -52360 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 186-52 chr7 81483168 81483708 + 0.5 NA Intergenic L1M3b|LINE|L1 78381 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 183-13 chr17 55713398 55713871 + 0.5 NA Intergenic Intergenic 9230 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 163.333-73 chr7 79163685 79164250 + 0.5 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 154979 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 170.833-18 chr2 119864719 119865258 + 0.5 NA intron (NM_002830, intron 3 of 26) MIR3|SINE|MIR 105066 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 128.167-11 chr11 27616619 27616985 + 0.5 NA TTS (NR_102708) TTS (NR_102708) 17825 NR_102708 101410541 Hs.471439 NR_102708 ENSG00000254934 LINC00678 - long intergenic non-protein coding RNA 678 ncRNA 170.5-65 chr7 23386584 23387060 + 0.5 NA intron (NM_006547, intron 3 of 14) AluSx1|SINE|Alu -9624 NR_145734 109616981 NR_145734 ENSG00000212264 SNORD65C - small nucleolar RNA, C/D box 65C snoRNA 136.167-66 chr6 8545082 8545660 + 0.5 NA intron (NR_038980, intron 2 of 4) intron (NR_038980, intron 2 of 4) -106838 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 202.5-12 chr2 52778682 52779158 + 0.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR -76305 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 125-92 chr8 22985607 22986089 + 0.5 NA Intergenic Intergenic -1403 NM_001160036 23221 Hs.372688 NM_015178 ENSG00000008853 RHOBTB2 DBC2|EIEE64 Rho related BTB domain containing 2 protein-coding 157.333-43 chr2 225334913 225335573 + 0.5 NA Intergenic Intergenic -64467 NM_001371273 143-26 chr16 3413186 3413598 + 0.5 NA Intergenic Intergenic 12177 NM_001347869 7727 Hs.155204 NM_003450 ENSG00000103343 ZNF174 ZSCAN8 zinc finger protein 174 protein-coding 165.667-27 chr16 58211198 58211542 + 0.5 NA Intergenic Intergenic -13264 NM_001896 1459 Hs.82201 NM_001896 ENSG00000070770 CSNK2A2 CK2A2|CK2alpha'|CSNK2A1 casein kinase 2 alpha 2 protein-coding 113.167-73 chr7 38646479 38646831 + 0.5 NA Intergenic L2a|LINE|L2 -15088 NM_139316 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 175.5-32 chr22 46653175 46653838 + 0.5 NA intron (NM_015124, intron 3 of 18) intron (NM_015124, intron 3 of 18) 33120 NM_015124 23151 Hs.475150 NM_015124 ENSG00000075240 GRAMD4 DIP GRAM domain containing 4 protein-coding 156.5-27 chr12 59217331 59217746 + 0.5 NA Intergenic Intergenic -297000 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 126.5-48 chr2 152456437 152456776 + 0.5 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 121432 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 147.833-15 chr12 55063581 55063909 + 0.5 NA Intergenic Intergenic 43771 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 128.667-101 chr6 62097229 62097865 + 0.5 NA intron (NR_146874, intron 2 of 13) L1MA6|LINE|L1 188678 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 172-10 chr11 47669376 47669729 + 0.5 NA intron (NM_024783, intron 14 of 18).2 AluSq2|SINE|Alu -26898 NM_001317232 23788 Hs.269944 NM_014342 ENSG00000109919 MTCH2 HSPC032|MIMP|SLC25A50 mitochondrial carrier 2 protein-coding 154.833-13 chr11 125995030 125995664 + 0.5 NA intron (NM_016952, intron 12 of 19) intron (NM_016952, intron 12 of 19) 49291 NM_001365077 338667 Hs.730137 NM_001365077 VSIG10L2 - V-set and immunoglobulin domain containing 10 like 2 protein-coding 199.333-26 chr3 26276847 26277372 + 0.5 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -345697 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 144-40 chr2 187330268 187330885 + 0.5 NA Intergenic L1M5|LINE|L1 117676 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 137.333-54 chr2 168442780 168443246 + 0.5 NA Intergenic Intergenic -13259 NM_001256126 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 142.333-50 chr2 49657176 49657523 + 0.5 NA Intergenic Intergenic 316854 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 119.5-18 chr11 32992831 32993102 + 0.5 NA Intergenic FLAM_C|SINE|Alu -22912 NM_001077242 91614 Hs.280990 NM_139160 ENSG00000121690 DEPDC7 TR2|dJ85M6.4 DEP domain containing 7 protein-coding 157-60 chr4 73887723 73888162 + 0.5 NA Intergenic L1MEd|LINE|L1 18549 NR_046035 2919 Hs.789 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 C-X-C motif chemokine ligand 1 protein-coding 116.333-65 chr4 18250465 18250846 + 0.5 NA Intergenic L2a|LINE|L2 -228780 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 139-49 chr4 151150425 151151016 + 0.5 NA intron (NM_001009555, intron 9 of 20) intron (NM_001009555, intron 9 of 20) 24832 NM_001128924 152503 Hs.744983 NM_001009555 ENSG00000109686 SH3D19 EBP|EVE1|Eve-1|Kryn|SH3P19 SH3 domain containing 19 protein-coding 154-88 chr9 19929744 19930278 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -142992 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 141.5-68 chr4 179513569 179513979 + 0.5 NA Intergenic LTR51|LTR|ERV1 -1605838 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 133.333-31 chr13 58678654 58679070 + 0.5 NA Intergenic MIR|SINE|MIR -445745 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 208-16 chr17 13624097 13624713 + 0.5 NA Intergenic L2|LINE|L2 -22476 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 169.833-18 chr2 43808164 43808697 + 0.5 NA intron (NM_001348913, intron 12 of 13) intron (NM_001348913, intron 12 of 13) 30409 NM_022436 64240 Hs.132992 NM_022436 ENSG00000138075 ABCG5 STSL ATP binding cassette subfamily G member 5 protein-coding 142.833-52 chr4 76020863 76021383 + 0.5 NA TTS (NM_001565) TTS (NM_001565) 2374 NM_001565 3627 Hs.632586 NM_001565 ENSG00000169245 CXCL10 C7|IFI10|INP10|IP-10|SCYB10|crg-2|gIP-10|mob-1 C-X-C motif chemokine ligand 10 protein-coding 128.5-2 chr1 47780650 47781037 + 0.5 NA intron (NM_001194986, intron 4 of 6) MIRc|SINE|MIR 216542 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 145.833-70 chr5 175773789 175774271 + 0.5 NA Intergenic MIRb|SINE|MIR -22503 NM_006650 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 119.667-68 chr4 30935836 30936213 + 0.5 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) 215655 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 150.167-2 chr1 37836376 37836721 + 0.5 NA intron (NM_005955, intron 4 of 10) intron (NM_005955, intron 4 of 10) 23044 NM_005955 4520 Hs.471991 NM_005955 ENSG00000188786 MTF1 MTF-1|ZRF metal regulatory transcription factor 1 protein-coding 125.333-129 chr9 109890916 109891278 + 0.5 NA intron (NM_053016, intron 3 of 6) intron (NM_053016, intron 3 of 6) 110899 NM_053016 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 124.667-7 chr1 188372220 188372517 + 0.5 NA Intergenic Tigger2a|DNA|TcMar-Tigger 928740 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 142.167-38 chr2 43904826 43905417 + 0.5 NA intron (NM_133259, intron 31 of 37) intron (NM_133259, intron 31 of 37) 66150 NM_022437 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 165.667-34 chr2 38819314 38819760 + 0.5 NA intron (NM_001329963, intron 17 of 23) intron (NM_001329963, intron 17 of 23) 41327 NM_024775 79833 Hs.143818 NM_024775 ENSG00000152147 GEMIN6 - gem nuclear organelle associated protein 6 protein-coding 138.833-14 chr11 98267694 98268067 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR -753069 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 138.833-3 chr1 116468198 116468598 + 0.5 NA intron (NR_125973, intron 2 of 3) MER5A|DNA|hAT-Charlie 10428 NR_125973 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 139.5-3 chr1 103388210 103388594 + 0.5 NA Intergenic Intergenic 137109 NM_001347929 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 127.333-93 chr5 168492927 168493265 + 0.5 NA intron (NM_002887, intron 3 of 14) intron (NM_002887, intron 3 of 14) 6625 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 178.5-69 chr7 110863508 110864003 + 0.5 NA intron (NM_001350963, intron 5 of 5) MER47B|DNA|TcMar-Tigger -227251 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 173.167-52 chr8 124686639 124687221 + 0.5 NA intron (NM_001282971, intron 3 of 14) MIRb|SINE|MIR 41543 NM_001363299 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 137.667-85 chr6 124921767 124922406 + 0.5 NA intron (NR_026876, intron 5 of 6) THE1B|LTR|ERVL-MaLR -40459 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 165.167-41 chr5 73865000 73865417 + 0.5 NA intron (NM_001177693, intron 17 of 35) MER5A|DNA|hAT-Charlie 51662 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 150.833-39 chr5 58708091 58708632 + 0.5 NA intron (NM_138453, intron 2 of 4) MamSINE1|SINE|tRNA-RTE 125286 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 133.833-55 chr4 80338896 80339260 + 0.5 NA intron (NM_152770, intron 1 of 5) LTR33|LTR|ERVL 3358 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 137.5 chr1 59107460 59107786 + 0.5 NA Intergenic Intergenic 39184 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 262.833-2 chr10 21995973 21996813 + 0.5 NA intron (NM_022365, intron 1 of 11) intron (NM_022365, intron 1 of 11) 7337 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 130.167-74 chr8 49376103 49376415 + 0.5 NA Intergenic L1MB5|LINE|L1 135921 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 150.167-70 chr9 99856541 99856878 + 0.5 NA intron (NM_006981, intron 7 of 7) intron (NM_006981, intron 7 of 7) 34824 NM_173199 8013 Hs.279522 NM_006981 ENSG00000119508 NR4A3 CHN|CSMF|MINOR|NOR1|TEC nuclear receptor subfamily 4 group A member 3 protein-coding 182.667-45 chr4 148076733 148077343 + 0.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR 294443 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 231.833-21 chrX 78590913 78591801 + 0.5 NA Intergenic L1MA1|LINE|L1 67971 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 193.5-51 chr7 8813018 8813533 + 0.5 NA Intergenic Intergenic 379666 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 130.333-81 chr6 103279856 103280321 + 0.5 NA Intergenic Intergenic 1579458 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 123.333-71 chr3 18478142 18478670 + 0.5 NA intron (NR_125803, intron 4 of 6) intron (NR_125803, intron 4 of 6) -32814 NM_001322872 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 148.5-48 chr3 69850168 69850648 + 0.5 NA intron (NM_001354608, intron 2 of 10) MIR|SINE|MIR -15816 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 171.667-16 chr12 19285747 19286403 + 0.5 NA intron (NM_001256787, intron 9 of 25) Charlie1a|DNA|hAT-Charlie 80750 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 124-42 chr17 27502456 27502844 + 0.5 NA intron (NM_014238, intron 2 of 20) intron (NM_014238, intron 2 of 20) 30686 NM_014238 8844 Hs.133534 NM_014238 ENSG00000141068 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 119.167-2 chr1 85845333 85845764 + 0.5 NA intron (NM_152890, intron 39 of 59) L1ME4b|LINE|L1 -137115 NM_001170670 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 116.167-39 chr20 13812049 13812338 + 0.5 NA intron (NR_147978, intron 9 of 11) intron (NR_147978, intron 9 of 11) 27165 NM_001039375 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 118.833-61 chr4 162861250 162861802 + 0.5 NA Intergenic MER20|DNA|hAT-Charlie 232102 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 206.833-26 chr7 93818797 93819658 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR 71526 NM_001271004 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 123.333-32 chr12 63374066 63374385 + 0.5 NA Intergenic L1ME2|LINE|L1 -221415 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 173-52 chr7 22415323 22415722 + 0.5 NA Intergenic MSTB2|LTR|ERVL-MaLR -58368 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 153.5-8 chr10 61221660 61222140 + 0.5 NA Intergenic Intergenic 205625 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 156-75 chr5 163789570 163790068 + 0.5 NA Intergenic L1MA4|LINE|L1 284200 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 143.167-52 chr3 120057796 120058160 + 0.5 NA intron (NM_002093, intron 1 of 11) intron (NM_002093, intron 1 of 11) 26670 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 139-24 chr19 15000426 15000832 + 0.5 NA intron (NR_073589, intron 1 of 8) L1MA8|LINE|L1 10014 NR_073589 6511 Hs.515217 NM_005071 ENSG00000105143 SLC1A6 EAAT4 solute carrier family 1 member 6 protein-coding 119.167-17 chr12 105118986 105119313 + 0.5 NA intron (NM_001293640, intron 7 of 32) LTR50|LTR|ERVL 11418 NM_015275 23325 Hs.12144 NM_015275 ENSG00000136051 WASHC4 KIAA1033|MRT43|SWIP WASH complex subunit 4 protein-coding 162.667-33 chr18 1476153 1476544 + 0.5 NA Intergenic Intergenic -116719 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 127.833-33 chr17 70013044 70013402 + 0.5 NA Intergenic Intergenic -38048 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 133.167-9 chr10 50600559 50601040 + 0.5 NA intron (NM_147156, intron 1 of 10) L2a|LINE|L2 23157 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 125.667-104 chr6 63575139 63575437 + 0.5 NA intron (NM_003463, intron 1 of 5) intron (NM_003463, intron 1 of 5) 3276 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 138.333-86 chr5 12655639 12656027 + 0.5 NA intron (NR_033383, intron 2 of 3) L1MEc|LINE|L1 -12026 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 156.333-86 chr8 10418241 10418704 + 0.5 NA intron (NM_001199729, intron 6 of 6) intron (NM_001199729, intron 6 of 6) -56093 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 178.5-22 chr12 79161277 79161813 + 0.5 NA intron (NM_005639, intron 3 of 10) intron (NM_005639, intron 3 of 10) 115853 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 114.167-91 chr7 113727108 113727592 + 0.5 NA Intergenic Intergenic 191659 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 113.5-76 chr6 97661735 97662229 + 0.5 NA intron (NR_110757, intron 3 of 4) L2c|LINE|L2 356396 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 150.167-24 chr17 69867219 69867834 + 0.5 NA intron (NR_109972, intron 4 of 4) L2a|LINE|L2 -94181 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 129.167-72 chr6 149166053 149166329 + 0.5 NA Intergenic MIRb|SINE|MIR -51733 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 117.167-35 chr2 17577746 17578246 + 0.5 NA intron (NM_001366806, intron 1 of 3) MIRb|SINE|MIR 37300 NM_001366806 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 121.5-50 chr18 61771816 61772204 + 0.5 NA Intergenic MLT1F|LTR|ERVL-MaLR 23834 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 115.167-31 chr13 103245641 103246101 + 0.5 NA Intergenic Intergenic -179329 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 145.333-12 chr10 66234769 66235231 + 0.5 NA intron (NM_001127384, intron 13 of 17) MLT1F2|LTR|ERVL-MaLR 663575 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 144.167-2 chr1 62312695 62313272 + 0.5 NA intron (NM_181712, intron 1 of 9) intron (NM_181712, intron 1 of 9) 6451 NM_001320269 163782 Hs.283398 NM_181712 ENSG00000132854 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 147.167-57 chr7 87959735 87960139 + 0.5 NA intron (NM_001324421, intron 2 of 28) intron (NM_001324421, intron 2 of 28) 25686 NM_001324420 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 125.333-4 chr1 78059833 78060161 + 0.5 NA intron (NM_017655, intron 1 of 5) intron (NM_017655, intron 1 of 5) 14031 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 114.167-5 chr1 201834147 201834408 + 0.5 NA intron (NM_018085, intron 1 of 23) intron (NM_018085, intron 1 of 23) -4718 NR_046696 100873949 Hs.604842 NR_046696 ENSG00000231871 IPO9-AS1 - IPO9 antisense RNA 1 ncRNA 162.333-13 chr12 41050224 41050635 + 0.5 NA intron (NM_001843, intron 23 of 23) MSTA|LTR|ERVL-MaLR -137891 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 126.333-40 chr16 64225222 64225650 + 0.5 NA Intergenic LTR9|LTR|ERV1 896627 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 151.5-50 chr4 25122450 25122886 + 0.5 NA 3' UTR (NM_016955, exon 11 of 11) 3' UTR (NM_016955, exon 11 of 11) 37781 NM_016955 51091 Hs.253305 NM_016955 ENSG00000109618 SEPSECS LP|PCH2D|SLA|SLA/LP Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase protein-coding 126-95 chr8 83326889 83327383 + 0.5 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat -76622 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 123.833-28 chr2 46400010 46400353 + 0.5 NA Intergenic L1ME3A|LINE|L1 -6014 NR_146999 105374582 Hs.570163 NR_146999 ENSG00000228100 LINC01820 - long intergenic non-protein coding RNA 1820 ncRNA 156.833-5 chr1 200899399 200899851 + 0.5 NA intron (NM_001367290, intron 3 of 9) intron (NM_001367290, intron 3 of 9) 4725 NM_001142569 55765 Hs.518997 NM_018265 ENSG00000163362 INAVA C1orf106 innate immunity activator protein-coding 125.667-55 chr2 40845578 40845914 + 0.5 NA Intergenic L1MD1|LINE|L1 -333311 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 114-69 chr3 130644177 130644440 + 0.5 NA intron (NM_001102608, intron 30 of 35) MER3|DNA|hAT-Charlie 83974 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 137.167-55 chr6 23249982 23250520 + 0.5 NA Intergenic Intergenic -532327 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 178.5-66 chr6 119813405 119813905 + 0.5 NA intron (NR_134600, intron 2 of 3) L2a|LINE|L2 -201524 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 114.167-42 chr2 5839148 5839576 + 0.5 NA Intergenic AluYm1|SINE|Alu -26766 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 121.5-23 chr11 108421768 108422103 + 0.5 NA intron (NM_001351110, intron 2 of 8) L1MB4|LINE|L1 45594 NM_001351110 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 124-22 chr12 4751964 4752301 + 0.5 NA intron (NM_017417, intron 6 of 10) L1MA2|LINE|L1 31732 NM_017417 26290 Hs.511985 NM_017417 ENSG00000130035 GALNT8 GALNAC-T8 polypeptide N-acetylgalactosaminyltransferase 8 protein-coding 113.167-79 chr8 136862523 136862822 + 0.5 NA intron (NR_147196, intron 4 of 5) L1ME1|LINE|L1 331874 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 126.333-55 chr2 35756050 35756467 + 0.5 NA Intergenic L1MA1|LINE|L1 284853 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 141.833-32 chr4 181263154 181263580 + 0.5 NA intron (NR_149139, intron 1 of 1) intron (NR_149139, intron 1 of 1) 1662 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 200.5-26 chr21 30544223 30544741 + 0.5 NA Intergenic L1M1|LINE|L1 -2618 NM_001303120 337973 Hs.553695 NM_181612 ENSG00000186925 KRTAP19-6 KAP19.6 keratin associated protein 19-6 protein-coding 137.167-60 chr7 39343547 39343901 + 0.5 NA intron (NM_001370959, intron 5 of 9) MIR3|SINE|MIR -14590 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 150-55 chr3 169982824 169983363 + 0.5 NA intron (NM_003262, intron 4 of 7) intron (NM_003262, intron 4 of 7) 16286 NM_003262 7095 Hs.744859 NM_003262 ENSG00000008952 SEC62 Dtrp1|HTP1|TLOC1|TP-1 SEC62 homolog, preprotein translocation factor protein-coding 242.667-11 chr14 71534284 71535101 + 0.5 NA intron (NM_001354289, intron 5 of 23) intron (NM_001354289, intron 5 of 23) 46831 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 161.833-12 chr15 69480188 69480700 + 0.5 NA Intergenic L1MB7|LINE|L1 27626 NM_001003 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 209-25 chr2 193457862 193458411 + 0.5 NA Intergenic Intergenic 708291 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 130-46 chr18 41399481 41399842 + 0.5 NA Intergenic L1ME2|LINE|L1 121016 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 222.167-6 chr10 78627739 78628239 + 0.5 NA Intergenic L2b|LINE|L2 360647 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 149-73 chr8 87030098 87030484 + 0.5 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 163876 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 126.667-31 chr18 25886123 25886680 + 0.5 NA Intergenic L1M1|LINE|L1 204212 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 122.5-53 chr20 41020754 41021114 + 0.5 NA intron (NR_145524, intron 3 of 3) intron (NR_145524, intron 3 of 3) -7888 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 160.333-70 chrX 23713680 23714224 + 0.5 NA intron (NM_001037171, intron 8 of 15) AluJo|SINE|Alu 29324 NM_001033583 23597 Hs.298885 NM_001033583 ENSG00000123130 ACOT9 ACATE2|CGI-16|MT-ACT48|MTACT48 acyl-CoA thioesterase 9 protein-coding 167.167-40 chr20 51194899 51195403 + 0.5 NA Intergenic Intergenic -172044 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 129-29 chr12 124140156 124140631 + 0.5 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) -148771 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 147.5-18 chr11 96721006 96721477 + 0.5 NA Intergenic Tigger2|DNA|TcMar-Tigger 212816 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 163.167-35 chr5 98088747 98089123 + 0.5 NA intron (NR_146477, intron 4 of 4) intron (NR_146477, intron 4 of 4) 72304 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 135-29 chr17 42388250 42388736 + 0.5 NA promoter-TSS (NM_139276) promoter-TSS (NM_139276) 2 NM_139276 6774 Hs.463059 NM_003150 ENSG00000168610 STAT3 ADMIO|ADMIO1|APRF|HIES signal transducer and activator of transcription 3 protein-coding 218.667-2 chr1 104728070 104728665 + 0.5 NA Intergenic L1M4b|LINE|L1 655344 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 144.833-56 chr4 63264480 63264804 + 0.5 NA Intergenic L1MC3|LINE|L1 -1102877 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 149.5-25 chr16 64033589 64033945 + 0.5 NA Intergenic MER1A|DNA|hAT-Charlie 1088296 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 184.833-33 chr7 110279768 110280253 + 0.5 NA Intergenic Arthur1B|DNA|hAT-Tip100 -319797 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 162.333-55 chr4 154506830 154507291 + 0.5 NA Intergenic Intergenic -15261 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 135-47 chr2 198101114 198101429 + 0.5 NA intron (NM_006226, intron 3 of 5) intron (NM_006226, intron 3 of 5) 273826 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 231.667-28 chr7 49193702 49194555 + 0.5 NA Intergenic Intergenic 269581 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 151.5-71 chr8 77209304 77209698 + 0.5 NA Intergenic Intergenic -208457 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 131.333-51 chr2 134049397 134049754 + 0.5 NA Intergenic L1MC1|LINE|L1 -70360 NM_001371457 183-29 chr2 143078020 143078513 + 0.5 NA Intergenic Intergenic -51153 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 178.333-49 chr8 23941260 23941980 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -86814 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 136.5-39 chr16 27714486 27714866 + 0.5 NA intron (NM_015202, intron 13 of 27) L1MB7|LINE|L1 4353 NR_147898 100128079 Hs.610277 NR_147898 LOC100128079 - uncharacterized LOC100128079 ncRNA 169.167-40 chr7 110252351 110252794 + 0.5 NA Intergenic Intergenic -292359 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 116.167-12 chr1 200682588 200683094 + 0.5 NA intron (NR_110787, intron 1 of 2) L2c|LINE|L2 -12843 NM_001349803 83479 Hs.497332 NM_031306 ENSG00000118197 DDX59 OFD5|ZNHIT5 DEAD-box helicase 59 protein-coding 118-57 chr2 118223050 118223347 + 0.5 NA Intergenic Intergenic -36812 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 170.167-12 chr12 22104043 22104640 + 0.5 NA Intergenic Intergenic 58123 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 155.167-47 chr8 17986871 17987324 + 0.5 NA intron (NM_001352648, intron 27 of 39) intron (NM_001352648, intron 27 of 39) 64109 NM_001352632 5108 Hs.491148 NM_006197 ENSG00000078674 PCM1 PTC4|RET/PCM-1 pericentriolar material 1 protein-coding 122-63 chr4 70816794 70817072 + 0.5 NA 3' UTR (NM_002092, exon 10 of 10) 3' UTR (NM_002092, exon 10 of 10) 22570 NM_001098477 2926 Hs.309763 NM_002092 ENSG00000132463 GRSF1 - G-rich RNA sequence binding factor 1 protein-coding 186.667-11 chr12 4556570 4557051 + 0.5 NA intron (NM_006479, intron 8 of 8) L1ME4a|LINE|L1 -5398 NM_001371301 137.333-42 chr18 35311666 35312029 + 0.5 NA Intergenic L1MEg|LINE|L1 21575 NR_024565 10778 Hs.314246 NM_006629 ENSG00000257267 ZNF271P CT-ZFP48|HZF7|ZNF-EB|ZNF-dp|ZNF271|ZNFEB zinc finger protein 271, pseudogene pseudo 129.167-78 chr8 17827272 17827770 + 0.5 NA Intergenic L1ME2z|LINE|L1 -25942 NM_001363061 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 131.167-20 chr12 59128819 59129187 + 0.5 NA Intergenic MER101|LTR|ERV1 -208465 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 198.167-9 chr15 99410505 99411093 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 153274 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 135.667-118 chrX 116430588 116431141 + 0.5 NA Intergenic Intergenic -5742 NM_007231 11254 Hs.522109 NM_007231 ENSG00000268104 SLC6A14 BMIQ11 solute carrier family 6 member 14 protein-coding 201.167-31 chr7 97175252 97175888 + 0.5 NA intron (NM_020186, intron 1 of 1) AluJo|SINE|Alu 58977 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 141-92 chr9 71562600 71563021 + 0.5 NA Intergenic Intergenic -115839 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 135-38 chr2 85804836 85805270 + 0.5 NA Intergenic Intergenic -10077 NR_038888 284950 Hs.570227 NR_038888 LOC284950 - uncharacterized LOC284950 ncRNA 138.333-2 chr1 10897626 10897942 + 0.5 NA Intergenic Intergenic 68903 NM_001366227 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 161.167-35 chr2 192965621 192966279 + 0.5 NA Intergenic Intergenic 216105 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 131.833-52 chr4 91906404 91906886 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 370657 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 121.667-80 chr5 169063141 169063406 + 0.5 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 50046 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 205.833-17 chr2 105829753 105830210 + 0.5 NA intron (NM_003581, intron 2 of 4) intron (NM_003581, intron 2 of 4) -21866 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 148-48 chr22 39129451 39129775 + 0.5 NA Intergenic AluSx1|SINE|Alu 23067 NM_175709 23492 Hs.356416 NM_175709 ENSG00000100307 CBX7 - chromobox 7 protein-coding 116.833-12 chr11 77533324 77533627 + 0.5 NA Intergenic Intergenic -37614 NR_130930 646029 Hs.609654 NM_001039908 LOC646029 - uncharacterized LOC646029 ncRNA 141-77 chr6 71594353 71594774 + 0.5 NA Intergenic Intergenic 173536 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 122.833-68 chr5 10362877 10363291 + 0.5 NA intron (NM_001270661, intron 1 of 22) L1MB8|LINE|L1 9389 NM_001270660 10299 Hs.432862 NM_005885 ENSG00000145495 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane associated ring-CH-type finger 6 protein-coding 135.667-116 chr9 75857473 75857845 + 0.5 NA Intergenic MIR|SINE|MIR -32985 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 149.167-10 chr11 95826846 95827398 + 0.5 NA intron (NM_014679, intron 8 of 10) intron (NM_014679, intron 8 of 10) 36624 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 143.667-25 chr12 26011879 26012276 + 0.5 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) 38322 NM_001164747 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 141-32 chr16 63417586 63418079 + 0.5 NA Intergenic Intergenic -1381394 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 217.5-25 chr2 108440085 108440574 + 0.5 NA Intergenic LOR1-int|LTR|ERV1 -8877 NM_181453 9648 Hs.436505 NM_181453 ENSG00000135968 GCC2 GCC185|RANBP2L4|REN53 GRIP and coiled-coil domain containing 2 protein-coding 209.333-42 chr5 89579617 89580292 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie 436766 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 115.833-41 chr20 49690702 49691034 + 0.5 NA intron (NM_004776, intron 1 of 8) intron (NM_004776, intron 1 of 8) 23010 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 157.167-16 chr10 107102100 107102525 + 0.5 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 62394 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 141.333-88 chr7 16408643 16409221 + 0.5 NA intron (NM_001101426, intron 1 of 9) AluSx1|SINE|Alu 12606 NM_001101417 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 140.667-18 chr12 14673036 14673319 + 0.5 NA intron (NM_004963, intron 8 of 26) intron (NM_004963, intron 8 of 26) 23422 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 128.333-84 chr3 128884603 128885227 + 0.5 NA intron (NM_014049, intron 2 of 17) intron (NM_014049, intron 2 of 17) 5295 NM_014049 28976 Hs.567482 NM_014049 ENSG00000177646 ACAD9 MC1DN20|NPD002 acyl-CoA dehydrogenase family member 9 protein-coding 247.833-12 chr8 10544493 10545255 + 0.5 NA intron (NM_001197020, intron 4 of 4) L1M4b|LINE|L1 19342 NM_001197020 203074 Hs.591394 NM_198464 ENSG00000184647 PRSS55 CT153|T-SP1|TSP1|UNQ9391 serine protease 55 protein-coding 160-35 chr16 50542881 50543270 + 0.5 NA Intergenic Intergenic -5321 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 201.5-33 chr6 127283447 127284022 + 0.5 NA intron (NM_030963, intron 3 of 4) intron (NM_030963, intron 3 of 4) 16896 NM_001242850 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 189.833-21 chr3 52546835 52547225 + 0.5 NA 3' UTR (NM_001366075, exon 31 of 31) 3' UTR (NM_001366075, exon 31 of 31) 10425 NM_001124767 440957 Hs.660577 NM_001124767 ENSG00000168273 SMIM4 C3orf78 small integral membrane protein 4 protein-coding 169-2 chr1 92102537 92103040 + 0.5 NA intron (NM_183242, intron 3 of 8) intron (NM_183242, intron 3 of 8) 22443 NM_183242 284697 Hs.676102 NM_183242 ENSG00000189195 BTBD8 - BTB domain containing 8 protein-coding 117.833-37 chr17 66030630 66031114 + 0.5 NA intron (NM_001353129, intron 12 of 26) intron (NM_001353129, intron 12 of 26) 161020 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 114.667-89 chr3 178217749 178218036 + 0.5 NA Intergenic Intergenic -201309 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 241.667-18 chr2 224010151 224010939 + 0.5 NA intron (NM_006216, intron 1 of 8) intron (NM_006216, intron 1 of 8) 20933 NR_073116 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 175.667-47 chr4 66074906 66075377 + 0.5 NA Intergenic L1PA15|LINE|L1 -201683 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 115.833-79 chr8 104675402 104675756 + 0.5 NA Intergenic L1PA16|LINE|L1 -86555 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 146.833-9 chr11 45179420 45179881 + 0.5 NA intron (NM_001256695, intron 1 of 7) MLT1A|LTR|ERVL-MaLR 32307 NM_001256696 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 131.833-47 chr3 99554947 99555367 + 0.5 NA Intergenic L1PA16|LINE|L1 -83437 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 132.833-5 chr1 216619772 216620235 + 0.5 NA intron (NM_001243505, intron 3 of 6) intron (NM_001243505, intron 3 of 6) 103426 NM_001243518 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 166.167-44 chr5 65683147 65683554 + 0.5 NA intron (NM_019072, intron 6 of 10) Tigger17a|DNA|TcMar-Tigger 38759 NM_019072 54557 Hs.482301 NM_019072 ENSG00000197860 SGTB SGT2 small glutamine rich tetratricopeptide repeat containing beta protein-coding 120.833-17 chr16 51634706 51635233 + 0.5 NA Intergenic Intergenic -127550 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 193.5-2 chr1 52215722 52216215 + 0.5 NA intron (NM_007324, intron 1 of 17) intron (NM_007324, intron 1 of 17) 73874 NM_004799 9372 Hs.532345 NM_004799 ENSG00000157077 ZFYVE9 MADHIP|NSP|PPP1R173|SARA|SMADIP zinc finger FYVE-type containing 9 protein-coding 145.833-5 chr1 151758260 151758666 + 0.5 NA Intergenic Intergenic -4506 NM_001134939 51686 Hs.713789 NM_016178 ENSG00000143450 OAZ3 AZ3|OAZ-t|TISP15 ornithine decarboxylase antizyme 3 protein-coding 128.333-44 chr16 24022269 24022656 + 0.5 NA intron (NM_002738, intron 3 of 16) MER102c|DNA|hAT-Charlie -180654 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 149-17 chr11 78001415 78001891 + 0.5 NA Intergenic AluSq2|SINE|Alu -6985 NM_033547 92105 Hs.533723 NM_033547 ENSG00000149262 INTS4 INT4|MST093 integrator complex subunit 4 protein-coding 124.667-40 chr15 77520565 77520919 + 0.5 NA Intergenic AluSc5|SINE|Alu -4853 NR_135692 101929457 Hs.637111 NR_135692 ENSG00000259362 LOC101929457 - uncharacterized LOC101929457 ncRNA 118.5-30 chr14 65690060 65690499 + 0.5 NA intron (NR_038167, intron 7 of 8) L1MC2|LINE|L1 219177 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 117.167-48 chr2 169964357 169964755 + 0.5 NA intron (NM_172070, intron 24 of 38) intron (NM_172070, intron 24 of 38) 137048 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 160.833-13 chr11 68257046 68257634 + 0.5 NA Intergenic AluSq|SINE|Alu 14633 NM_022338 53838 Hs.303025 NM_022338 ENSG00000171067 C11orf24 DM4E3 chromosome 11 open reading frame 24 protein-coding 124.667-32 chr14 58662030 58662448 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 23402 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 116.5-84 chr7 66345150 66345601 + 0.5 NA intron (NM_003596, intron 3 of 5) AluSx1|SINE|Alu 55033 NR_026873 285908 Hs.50755 NM_181722 ENSG00000179406 LINC00174 NCRNA00174 long intergenic non-protein coding RNA 174 ncRNA 213.833-33 chr7 12233651 12234138 + 0.5 NA 3' UTR (NM_018374, exon 9 of 9) 3' UTR (NM_018374, exon 9 of 9) 22600 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 147.667-59 chr5 159990751 159991234 + 0.5 NA Intergenic L1ME1|LINE|L1 -18108 NM_001282500 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 129.833-2 chr1 77077584 77078116 + 0.5 NA Intergenic Intergenic 17707 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 123-34 chr17 67337007 67337451 + 0.5 NA TTS (NM_001316341) TTS (NM_001316341) 29348 NM_001316341 5718 Hs.4295 NM_002816 ENSG00000197170 PSMD12 Rpn5|STISS|p55 proteasome 26S subunit, non-ATPase 12 protein-coding 148.167-68 chr5 153761105 153761530 + 0.5 NA intron (NM_000827, intron 11 of 15) L1MA6|LINE|L1 137670 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 142.667-4 chr1 91545795 91546210 + 0.5 NA Intergenic Intergenic 44894 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 182.333-45 chr3 123620641 123621145 + 0.5 NA promoter-TSS (NM_053031) promoter-TSS (NM_053031) -345 NM_053031 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 155.5-9 chr12 2621624 2622129 + 0.5 NA intron (NM_001129840, intron 29 of 46) L2b|LINE|L2 50344 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 178.667-3 chr1 86121943 86122598 + 0.5 NA intron (NM_152890, intron 3 of 59) L2c|LINE|L2 34201 NM_001349955 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 116.333-37 chr13 73940198 73940531 + 0.5 NA intron (NM_007249, intron 3 of 7) MamRTE1|LINE|RTE-BovB 193565 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 183.833-45 chr8 140834659 140835333 + 0.5 NA intron (NM_001352746, intron 4 of 30) intron (NM_001352746, intron 4 of 30) -102343 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 134.167-13 chr10 114814306 114814734 + 0.5 NA Intergenic L2a|LINE|L2 -7260 NM_001135051 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 134.667-41 chr17 78284048 78284453 + 0.5 NA Intergenic Intergenic -5758 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LINC01993 - long intergenic non-protein coding RNA 1993 ncRNA 118.667-95 chr5 144360074 144360393 + 0.5 NA intron (NM_001370487, intron 2 of 2) L1PA7|LINE|L1 154842 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 211.667-10 chr12 41518570 41519037 + 0.5 NA intron (NM_001164595, intron 5 of 9) AluJr|SINE|Alu 81064 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 142-5 chr1 106101010 106101398 + 0.5 NA Intergenic Intergenic -72951 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 173.5-7 chr10 4364260 4364666 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -19783 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 121.333-100 chr7 19214944 19215282 + 0.5 NA Intergenic Intergenic -69692 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 122.833-48 chr20 746689 746975 + 0.5 NA Intergenic AluSz6|SINE|Alu 21668 NM_033409 113278 Hs.283865 NM_033409 ENSG00000101276 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 member 3 protein-coding 139.167-28 chr16 58251827 58252355 + 0.5 NA intron (NM_014157, intron 1 of 8) AluJr4|SINE|Alu 2155 NM_001142302 29070 Hs.11614 NM_014157 ENSG00000103021 CCDC113 HSPC065 coiled-coil domain containing 113 protein-coding 152-36 chr3 167708912 167709310 + 0.5 NA intron (NM_145859, intron 3 of 8) intron (NM_145859, intron 3 of 8) 25731 NM_145860 11235 Hs.478150 NM_007217 ENSG00000114209 PDCD10 CCM3|TFAR15 programmed cell death 10 protein-coding 166.667-40 chr4 136090165 136090821 + 0.5 NA Intergenic Intergenic -176813 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 159.333-67 chr5 115700563 115700942 + 0.5 NA Intergenic MLT1-int|LTR|ERVL-MaLR -28100 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 113.833-51 chr3 10995050 10995327 + 0.5 NA intron (NM_001348251, intron 1 of 15) intron (NM_001348251, intron 1 of 15) 2440 NM_003042 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 206.833-22 chr5 30326322 30326975 + 0.5 NA Intergenic Intergenic 446088 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 119.5-62 chr3 36361384 36361900 + 0.5 NA Intergenic L1MC3|LINE|L1 -18845 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 156.167-14 chr11 103851029 103851485 + 0.5 NA Intergenic Intergenic 1351 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 142.333-80 chr5 10077572 10077958 + 0.5 NA Intergenic MER20|DNA|hAT-Charlie 172123 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 115.5-30 chr12 133006950 133007323 + 0.5 NA exon (NM_001330513, exon 3 of 5) exon (NM_001330513, exon 3 of 5) 20769 NM_001330513 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 139.833-52 chr21 46531045 46531362 + 0.5 NA intron (NM_001146115, intron 8 of 19) intron (NM_001146115, intron 8 of 19) 68732 NR_046400 100862692 Hs.737163 NR_046400 ENSG00000223692 DIP2A-IT1 - DIP2A intronic transcript 1 ncRNA 181.833-46 chr6 138395566 138396112 + 0.5 NA Intergenic Intergenic -7692 NM_001326380 23593 Hs.486589 NM_014320 ENSG00000051620 HEBP2 C6ORF34B|C6orf34|PP23|SOUL heme binding protein 2 protein-coding 189.333-23 chr2 71109888 71110492 + 0.5 NA intron (NM_032601, intron 2 of 2) L3b|LINE|CR1 20039 NM_032601 84693 Hs.94949 NM_032601 ENSG00000124370 MCEE GLOD2 methylmalonyl-CoA epimerase protein-coding 114.667-32 chr14 70342916 70343349 + 0.5 NA intron (NM_001202548, intron 3 of 5) intron (NM_001202548, intron 3 of 5) 16551 NM_016468 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 129.833-19 chr14 42233863 42234228 + 0.5 NA Intergenic Intergenic 627189 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 169.167 chr1 158918687 158919246 + 0.5 NA Intergenic Intergenic -12586 NM_198930 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 153.333 chr1 119250272 119250905 + 0.5 NA intron (NR_125975, intron 4 of 6) L1ME3G|LINE|L1 -77664 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 155.667-67 chr5 159655294 159655847 + 0.5 NA Intergenic Intergenic -189294 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 169-43 chr4 114281090 114281514 + 0.5 NA Intergenic Intergenic -301655 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 115.5-16 chr10 60204145 60204624 + 0.5 NA intron (NM_001204403, intron 12 of 43) intron (NM_001204403, intron 12 of 43) -63368 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 143.833-17 chr2 75502261 75502712 + 0.5 NA intron (NM_032181, intron 3 of 3) intron (NM_032181, intron 3 of 3) -21582 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 123.167-14 chr10 110783758 110784174 + 0.5 NA intron (NM_001134363, intron 3 of 13) L1MB5|LINE|L1 86938 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 123-8 chr10 91470421 91470794 + 0.5 NA intron (NM_182765, intron 5 of 20) L1PA13|LINE|L1 60322 NR_145526 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 142.667-83 chr5 114009703 114010100 + 0.5 NA Intergenic Intergenic -352169 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 138.167-2 chr1 100258121 100258465 + 0.5 NA Intergenic L1MB7|LINE|L1 -7865 NM_003729 8634 Hs.484222 NM_003729 ENSG00000137996 RTCA RPC|RTC1|RTCD1 RNA 3'-terminal phosphate cyclase protein-coding 143.833-58 chr8 143300951 143301397 + 0.5 NA Intergenic L1MEh|LINE|L1 9757 NM_030895 79943 Hs.512740 NM_030895 ENSG00000185730 ZNF696 - zinc finger protein 696 protein-coding 182.333-15 chr13 95353818 95354222 + 0.5 NA Intergenic AluJo|SINE|Alu -52569 NM_001105515 10257 Hs.508423 NM_005845 ENSG00000125257 ABCC4 MOAT-B|MOATB|MRP4 ATP binding cassette subfamily C member 4 protein-coding 119.5-53 chr20 769181 769607 + 0.5 NA promoter-TSS (NM_033409) promoter-TSS (NM_033409) -894 NM_033409 113278 Hs.283865 NM_033409 ENSG00000101276 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 member 3 protein-coding 121.833-62 chr5 103949736 103950099 + 0.5 NA Intergenic Intergenic -387128 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 149.667-17 chr12 87335654 87336051 + 0.5 NA Intergenic Intergenic 5113 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 129.5-21 chr13 57003483 57003824 + 0.5 NA Intergenic Intergenic -137265 NM_001130404 729233 Hs.723090 NM_001130404 ENSG00000204918 PRR20B PRR20|PRR20A|PRR20C|PRR20D|PRR20E proline rich 20B protein-coding 147.667 chr1 30557626 30558232 + 0.5 NA Intergenic AluSq2|SINE|Alu -160843 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 201.333-22 chr2 215695554 215696219 + 0.5 NA intron (NR_037195, intron 5 of 9) intron (NR_037195, intron 5 of 9) -22157 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 182.167-24 chr2 112966876 112967578 + 0.5 NA Intergenic L1MC4a|LINE|L1 -10779 NM_001278568 56300 Hs.211238 NM_019618 ENSG00000136688 IL36G IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2 interleukin 36 gamma protein-coding 121.333-104 chr8 34748717 34749212 + 0.5 NA Intergenic AluSz6|SINE|Alu -34957 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 163.5-10 chr10 97842159 97842601 + 0.5 NA intron (NR_108035, intron 1 of 2) SVA_A|Retroposon|SVA 7418 NR_108035 100505561 Hs.351904 NR_108035 ENSG00000227356 LINC00866 - long intergenic non-protein coding RNA 866 ncRNA 135.333-56 chr4 61982561 61983046 + 0.5 NA intron (NM_001371343, intron 17 of 23) L4_A_Mam|LINE|RTE-X 178962 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 197.833-26 chr5 26760873 26761561 + 0.5 NA Intergenic L2|LINE|L2 277369 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 184.833-35 chr8 88552462 88553008 + 0.5 NA Intergenic Intergenic -225252 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 157-79 chr8 89209648 89210060 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 547857 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 115.5-39 chr15 67256489 67256913 + 0.5 NA intron (NM_001031715, intron 1 of 20) intron (NM_001031715, intron 1 of 20) -1503 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 123.167-101 chr9 80402812 80403152 + 0.5 NA Intergenic Intergenic 427959 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 146.333-37 chr17 75383191 75383657 + 0.5 NA intron (NM_002086, intron 2 of 5) intron (NM_002086, intron 2 of 5) 22254 NM_002086 2885 Hs.444356 NM_002086 ENSG00000177885 GRB2 ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2 growth factor receptor bound protein 2 protein-coding 185-42 chr5 135862558 135863283 + 0.5 NA intron (NM_145282, intron 4 of 4) intron (NM_145282, intron 4 of 4) 28244 NM_001349336 153328 Hs.412418 NM_145282 ENSG00000145832 SLC25A48 - solute carrier family 25 member 48 protein-coding 130.5-27 chr15 92802606 92803010 + 0.5 NA Intergenic AluSz|SINE|Alu 7324 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 154.333-51 chr3 115202331 115202712 + 0.5 NA Intergenic L2a|LINE|L2 -55233 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 178.833-38 chr8 137756762 137757367 + 0.5 NA Intergenic L1M1|LINE|L1 326481 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 118.167-39 chr20 62867631 62867934 + 0.5 NA Intergenic L1MEc|LINE|L1 -5960 NM_001301726 10732 Hs.126248 NM_006602 ENSG00000101190 TCFL5 CHA|E2BP-1|Figlb|SOSF1|bHLHe82 transcription factor like 5 protein-coding 119.167-35 chr18 9671880 9672206 + 0.5 NA Intergenic AluJb|SINE|Alu -36258 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 176.833-12 chr15 58046830 58047373 + 0.5 NA intron (NM_170696, intron 1 of 11) intron (NM_170696, intron 1 of 11) -18124 NR_147215 283665 Hs.638961 NR_147215 LOC283665 - uncharacterized LOC283665 ncRNA 119.333-74 chr4 128842243 128842560 + 0.5 NA intron (NM_001287442, intron 2 of 10) AluSx1|SINE|Alu 30557 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 183.333-33 chr2 188613019 188613459 + 0.5 NA Intergenic L1MA5|LINE|L1 176884 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 124.167-45 chr2 30414988 30415453 + 0.5 NA Intergenic L1MB7|LINE|L1 -32026 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 146.333-28 chr14 31037614 31038009 + 0.5 NA intron (NM_001254728, intron 1 of 5) AluJr|SINE|Alu 11168 NM_001254728 11154 Hs.293411 NM_007077 ENSG00000100478 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor related protein complex 4 subunit sigma 1 protein-coding 167.333-33 chr2 50560128 50560682 + 0.5 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 135857 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 114.167-61 chr22 47708416 47708768 + 0.5 NA intron (NR_122046, intron 7 of 8) L1ME5|LINE|L1 76918 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 139.333-19 chr11 6553704 6554021 + 0.5 NA intron (NM_144666, intron 24 of 42) L1ME2|LINE|L1 49754 NM_015324 23378 Hs.652255 NM_015324 ENSG00000132275 RRP8 KIAA0409|NML ribosomal RNA processing 8 protein-coding 152.5-44 chr3 171308698 171309256 + 0.5 NA intron (NM_001161563, intron 2 of 31) L1PA15|LINE|L1 151428 NM_001161560 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 149.5-23 chr14 51599194 51599589 + 0.5 NA intron (NR_047477, intron 1 of 3) L1PA16|LINE|L1 561 NR_047477 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 128.833-54 chr3 58449760 58450324 + 0.5 NA Intergenic L1MB3|LINE|L1 -16190 NM_001173468 5162 Hs.161357 NM_000925 ENSG00000168291 PDHB PDHBD|PDHE1-B|PDHE1B|PHE1B pyruvate dehydrogenase E1 beta subunit protein-coding 139.167-19 chr14 39907110 39907506 + 0.5 NA Intergenic Intergenic -474808 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 129.167-82 chr8 114389984 114390426 + 0.5 NA Intergenic L1M5|LINE|L1 -953266 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 129.333-79 chr6 97560778 97561201 + 0.5 NA intron (NR_110757, intron 1 of 4) L1PBa|LINE|L1 255403 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 152.167-67 chr7 78079837 78080299 + 0.5 NA intron (NM_001301128, intron 19 of 20) intron (NM_001301128, intron 19 of 20) 239938 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 259-26 chr8 135333480 135334658 + 0.5 NA Intergenic Intergenic 99938 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 143.667-88 chr5 67188338 67188813 + 0.5 NA intron (NM_005582, intron 1 of 2) intron (NM_005582, intron 1 of 2) 8224 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 118.5-40 chr17 60501558 60501880 + 0.5 NA intron (NM_006380, intron 1 of 12) intron (NM_006380, intron 1 of 12) 24521 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 169.333-16 chr12 12532556 12532943 + 0.5 NA intron (NM_030640, intron 1 of 6).2 AluSq2|SINE|Alu 30114 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 127.333-109 chr7 93095885 93096491 + 0.5 NA Intergenic LTR33|LTR|ERVL 21791 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 120.667-38 chr14 63807173 63807524 + 0.5 NA Intergenic AluJb|SINE|Alu -45617 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 145.333-11 chr10 43837791 43838259 + 0.5 NA Intergenic MSTD-int|LTR|ERVL-MaLR -7281 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 119.833-27 chr14 43078097 43078395 + 0.5 NA Intergenic Intergenic 1429037 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 173.167-34 chr5 23950094 23950530 + 0.5 NA Intergenic Intergenic -1036 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 116.667-25 chr12 96436187 96436496 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -35902 NM_001170464 5128 Hs.506415 NM_002595 ENSG00000059758 CDK17 PCTAIRE2|PCTK2 cyclin dependent kinase 17 protein-coding 129.167-36 chr18 66627479 66627799 + 0.5 NA Intergenic MER58A|DNA|hAT-Charlie -23549 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 138.333-95 chr6 136722695 136723076 + 0.5 NA intron (NM_005923, intron 1 of 29) AluJr|SINE|Alu -61162 NR_134635 101928429 Hs.672896 NR_134635 LOC101928429 - uncharacterized LOC101928429 ncRNA 209.667-28 chr4 65317383 65318153 + 0.5 NA Intergenic Intergenic -313268 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 170.167-14 chr12 88910070 88910564 + 0.5 NA Intergenic L1MA4A|LINE|L1 109375 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 153.333-59 chr4 32452622 32453107 + 0.5 NA Intergenic Intergenic 101826 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 149.167-50 chr5 155265823 155266179 + 0.5 NA Intergenic Intergenic 252246 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 117.333-101 chr7 71718726 71719031 + 0.5 NA Intergenic AluJr4|SINE|Alu -411108 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 154.167-63 chr9 27330806 27331533 + 0.5 NA intron (NM_024761, intron 3 of 3) intron (NM_024761, intron 3 of 3) -34019 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 198.167-7 chr15 23790836 23791393 + 0.5 NA Intergenic Intergenic -103809 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 168.5-31 chr2 189934387 189934871 + 0.5 NA Intergenic Intergenic 128100 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 136.5-9 chr1 162174446 162175034 + 0.5 NA intron (NM_014697, intron 2 of 9) L1MC3|LINE|L1 17633 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 155.667-51 chr3 196872534 196872981 + 0.5 NA intron (NM_152699, intron 1 of 9) MER3|DNA|hAT-Charlie 4837 NM_152699 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 186.5-66 chr8 121161568 121162171 + 0.5 NA Intergenic Intergenic -349823 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 139-35 chr20 19098149 19098492 + 0.5 NA Intergenic MLT1N2|LTR|ERVL-MaLR -114322 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 204.333-19 chr14 52485167 52485712 + 0.5 NA intron (NM_001160047, intron 12 of 20) Tigger3b|DNA|TcMar-Tigger 67066 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 200.667-24 chr15 38442796 38443265 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR -11097 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 133.333-46 chr18 26566283 26566710 + 0.5 NA intron (NM_001258222, intron 1 of 4) intron (NM_001258222, intron 1 of 4) -16682 NM_001258221 284252 Hs.526630 NM_198991 ENSG00000134504 KCTD1 C18orf5 potassium channel tetramerization domain containing 1 protein-coding 180.167-46 chr5 95512707 95513310 + 0.5 NA intron (NM_014639, intron 27 of 42) intron (NM_014639, intron 27 of 42) 41997 NM_014639 9652 Hs.482868 NM_014639 ENSG00000198677 TTC37 KIAA0372|Ski3|THES tetratricopeptide repeat domain 37 protein-coding 193-35 chr4 42589254 42589718 + 0.5 NA intron (NM_001105529, intron 7 of 35) intron (NM_001105529, intron 7 of 35) 67619 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 152.833-11 chr11 18827880 18828603 + 0.5 NA Intergenic L1PB1|LINE|L1 -35520 NM_001278236 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 127.5-18 chr12 26373354 26373813 + 0.5 NA intron (NM_002223, intron 55 of 56) intron (NM_002223, intron 55 of 56) 178010 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 172.667-71 chr6 156395216 156395797 + 0.5 NA Intergenic Intergenic 16756 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 147.833-6 chr10 20537508 20538028 + 0.5 NA Intergenic MER1A|DNA|hAT-Charlie -14202 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 130.5-46 chr2 138609132 138609688 + 0.5 NA Intergenic Intergenic 107640 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 139.333-78 chr5 82073153 82073625 + 0.5 NA intron (NM_031482, intron 3 of 7) intron (NM_031482, intron 3 of 7) 101366 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 133.833-6 chr10 32654481 32655047 + 0.5 NA intron (NM_001321115, intron 21 of 43) L1M4|LINE|L1 208624 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 148.167-65 chr5 123001150 123001805 + 0.5 NA intron (NM_014035, intron 5 of 6) intron (NM_014035, intron 5 of 6) 35248 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 203-26 chr22 28824565 28825065 + 0.5 NA Intergenic AluYj4|SINE|Alu -24243 NM_005080 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding 213.5-32 chr6 11288371 11288867 + 0.5 NA intron (NM_001142393, intron 2 of 7) MamRep605|LTR?|LTR? -55937 NM_001271033 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 136-87 chr9 73671386 73671872 + 0.5 NA Intergenic Intergenic 519764 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 163.833-15 chr12 17844363 17844857 + 0.5 NA Intergenic L1M3|LINE|L1 171311 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 141.5-30 chr14 29287290 29287606 + 0.5 NA Intergenic Intergenic -501661 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 161.333-76 chr8 127285142 127285616 + 0.5 NA intron (NR_117099, intron 1 of 3) AluSq2|SINE|Alu 40742 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 114.333-66 chr2 49996901 49997231 + 0.5 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -22863 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 234.5-27 chr6 38936899 38937739 + 0.5 NA intron (NR_038401, intron 1 of 4) L1PA7|LINE|L1 15788 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 131.833-77 chrX 115331806 115332167 + 0.5 NA Intergenic AluJb|SINE|Alu 42271 NM_001318840 51213 Hs.242183 NM_016383 ENSG00000102021 LUZP4 CT-28|CT-8|CT28|HOM-TES-85 leucine zipper protein 4 protein-coding 165.333-27 chr17 51359851 51360289 + 0.5 NA Intergenic Intergenic 23355 NR_122104 440446 Hs.626751 NR_122104 ENSG00000267452 LINC02072 - long intergenic non-protein coding RNA 2072 ncRNA 130.833-75 chr8 121392627 121392941 + 0.5 NA Intergenic Intergenic -246562 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 192.833-26 chr3 114611217 114611644 + 0.5 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) 12776 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 291-2 chr10 79315561 79316361 + 0.5 NA 3' UTR (NM_020338, exon 25 of 25) 3' UTR (NM_020338, exon 25 of 25) -31508 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 222.333-14 chr16 62263379 62264038 + 0.5 NA Intergenic Intergenic -227270 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 145-30 chr16 60548581 60548946 + 0.5 NA Intergenic Intergenic -188970 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 122-51 chr3 97521768 97522062 + 0.5 NA intron (NM_001080448, intron 10 of 17) intron (NM_001080448, intron 10 of 17) 82308 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 121.833-63 chr5 135298942 135299404 + 0.5 NA intron (NR_161235, intron 3 of 5) L1ME1|LINE|L1 -50996 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 117.833-28 chr14 59839789 59840084 + 0.5 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 30840 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 130.167-67 chr6 73626757 73627188 + 0.5 NA intron (NM_012434, intron 6 of 10) AluSx1|SINE|Alu 27020 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 192.333-27 chr21 20131471 20131875 + 0.5 NA Intergenic Intergenic 127012 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 208.833-15 chr16 78424265 78425054 + 0.5 NA intron (NM_001291997, intron 5 of 7) MER81|DNA|hAT-Blackjack 325005 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 136.833-18 chr13 108525385 108526011 + 0.5 NA Intergenic Intergenic -70207 NM_015011 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 168-3 chr1 113096588 113097034 + 0.5 NA intron (NM_014813, intron 8 of 17) intron (NM_014813, intron 8 of 17) 23613 NM_001312686 9860 Hs.448972 NM_014813 ENSG00000198799 LRIG2 LIG-2|LIG2|UFS2 leucine rich repeats and immunoglobulin like domains 2 protein-coding 152.667-56 chr3 70264772 70265240 + 0.5 NA intron (NM_001364676, intron 2 of 4) THE1B|LTR|ERVL-MaLR 47632 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 116 chr1 9112306 9112577 + 0.5 NA intron (NM_024980, intron 1 of 3) intron (NM_024980, intron 1 of 3) 16661 NM_024980 80045 Hs.632367 NM_024980 ENSG00000180758 GPR157 - G protein-coupled receptor 157 protein-coding 182.167-13 chr13 114246415 114246851 + 0.5 NA intron (NM_001330104, intron 9 of 16) intron (NM_001330104, intron 9 of 16) 2128 NR_049839 100847035 NR_049839 ENSG00000264539 MIR548AR - microRNA 548ar ncRNA 143-43 chr21 33039701 33040126 + 0.5 NA Intergenic Intergenic 13978 NM_005806 10215 Hs.176977 NM_005806 ENSG00000205927 OLIG2 BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19 oligodendrocyte transcription factor 2 protein-coding 120.167-37 chr2 124288551 124288915 + 0.5 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 263446 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 118.333-40 chr15 90939661 90940052 + 0.5 NA intron (NM_001323621, intron 5 of 19) intron (NM_001323621, intron 5 of 19) 4571 NM_018671 55898 Hs.389461 NM_017979 ENSG00000140553 UNC45A GC-UNC45|GCUNC-45|GCUNC45|IRO039700|SMAP-1|SMAP1|UNC-45A unc-45 myosin chaperone A protein-coding 123.333-27 chr11 106038977 106039288 + 0.5 NA Intergenic Intergenic -16845 NM_001318750 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 122-72 chr5 168605327 168605621 + 0.5 NA Intergenic MER45A|DNA|hAT-Tip100 -26106 NM_024594 79646 Hs.388400 NM_024594 ENSG00000120137 PANK3 - pantothenate kinase 3 protein-coding 127.167-90 chr8 123074520 123074855 + 0.5 NA intron (NM_001363149, intron 1 of 21) intron (NM_001363149, intron 1 of 21) 1438 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 114.167-81 chr5 113341404 113341902 + 0.5 NA intron (NM_001085377, intron 2 of 18) MLT1J2|LTR|ERVL-MaLR -46715 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 121.833-30 chr2 14657686 14657954 + 0.5 NA Intergenic L1MEf|LINE|L1 25103 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 128.5-37 chr2 77582182 77582536 + 0.5 NA Intergenic L1MA9|LINE|L1 -59926 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 125.833-34 chr18 63679840 63680181 + 0.5 NA Intergenic L1MEd|LINE|L1 -18117 NM_006919 6317 Hs.227948 NM_006919 ENSG00000057149 SERPINB3 HsT1196|SCC|SCCA-1|SCCA-PD|SCCA1|SSCA1|T4-A serpin family B member 3 protein-coding 147.167-52 chr5 135652522 135652924 + 0.5 NA intron (NR_027127, intron 1 of 2) ERVL-E-int|LTR|ERVL 1212 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 124.833-67 chr4 41485142 41485479 + 0.5 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) -52847 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 146.833-47 chr4 65175316 65175752 + 0.5 NA Intergenic L2a|LINE|L2 -171034 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 183-19 chr2 24574818 24575310 + 0.5 NA intron (NM_001362955, intron 3 of 23) L1MEc|LINE|L1 -9413 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 150.667-12 chr10 48921162 48921569 + 0.5 NA intron (NM_020945, intron 47 of 61) L1MEf|LINE|L1 -7130 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 176.833-9 chr14 46554561 46555037 + 0.5 NA Intergenic L1PA15-16|LINE|L1 83440 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 211.167-29 chr6 124437915 124438537 + 0.5 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 155221 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 169.667-60 chr5 122217211 122217598 + 0.5 NA Intergenic L1M4|LINE|L1 57228 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 135.333-2 chr1 11215139 11215443 + 0.5 NA intron (NM_004958, intron 20 of 57) intron (NM_004958, intron 20 of 57) 25936 NM_021146 10218 Hs.146559 NM_021146 ENSG00000171819 ANGPTL7 AngX|CDT6|dJ647M16.1 angiopoietin like 7 protein-coding 191-42 chr3 74257398 74257815 + 0.5 NA Intergenic Intergenic 263534 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 137.333-76 chr5 78434940 78435353 + 0.5 NA intron (NM_004866, intron 6 of 8) MER72B|LTR|ERV1 74529 NM_001290229 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 249.5-20 chr22 34798414 34798947 + 0.5 NA intron (NR_138042, intron 3 of 4) LTR16A1|LTR|ERVL 199236 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 113.167-11 chr10 106227834 106228192 + 0.5 NA Intergenic Intergenic 87848 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 126.667-47 chr20 46934615 46934965 + 0.5 NA intron (NM_172110, intron 1 of 13) L2b|LINE|L2 39947 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 148.333-62 chr3 62275049 62275488 + 0.5 NA intron (NM_002841, intron 23 of 29) intron (NM_002841, intron 23 of 29) 43679 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 136.5-6 chr1 85986678 85987129 + 0.5 NA intron (NM_152890, intron 20 of 59) intron (NM_152890, intron 20 of 59) 169568 NM_001349955 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 151.333-19 chr11 75010734 75011245 + 0.5 NA TTS (NM_001367864) TTS (NM_001367864) 22056 NM_001367867 10825 Hs.191074 NM_006656 ENSG00000162139 NEU3 SIAL3 neuraminidase 3 protein-coding 127.833-2 chr1 35774413 35774822 + 0.5 NA Intergenic Charlie22a|DNA|hAT-Charlie -4639 NM_001330490 63967 Hs.175613 NM_022111 ENSG00000092853 CLSPN - claspin protein-coding 119.5-3 chr1 12566882 12567177 + 0.5 NA TTS (NM_004753) TTS (NM_004753) 11994 NR_106788 102466722 NR_106788 ENSG00000276830 MIR6730 hsa-mir-6730 microRNA 6730 ncRNA 159.167-52 chr5 20169596 20170005 + 0.5 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -135751 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 167.833-5 chr11 99254286 99254661 + 0.5 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 233524 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 168.5-70 chr9 38706020 38706464 + 0.5 NA Intergenic Intergenic 85154 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 133.667-106 chrX 87207323 87207693 + 0.5 NA Intergenic L1MB3|LINE|L1 -310294 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 151.333-42 chr19 29540644 29541187 + 0.5 NA intron (NM_001146339, intron 4 of 4) L2c|LINE|L2 14331 NM_001146339 342865 Hs.451618 NM_001146339 ENSG00000187135 VSTM2B - V-set and transmembrane domain containing 2B protein-coding 144.667-19 chr10 106409772 106410269 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 269855 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 115.333-109 chr9 31557331 31557754 + 0.5 NA Intergenic MLT2B1|LTR|ERVL -176052 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 155.333-56 chr20 37948193 37948609 + 0.5 NA Intergenic AluSc5|SINE|Alu 45274 NM_080607 128434 Hs.517029 NM_080607 ENSG00000132821 VSTM2L C20orf102|dJ1118M15.2 V-set and transmembrane domain containing 2 like protein-coding 143.167-25 chr17 29150691 29151203 + 0.5 NA intron (NM_001346765, intron 2 of 42) intron (NM_001346765, intron 2 of 42) -10558 NM_001346768 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 126.167-52 chr3 40419778 40420066 + 0.5 NA intron (NM_001248, intron 7 of 10) intron (NM_001248, intron 7 of 10) 32738 NM_001291960 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 161.833-11 chr15 59694248 59694850 + 0.5 NA Intergenic AluSz6|SINE|Alu -5229 NM_001368057 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 134.167-76 chr7 159259349 159259617 + 0.5 NA Intergenic Intergenic -114526 NM_001304522 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 141.833-7 chr10 90269394 90270057 + 0.5 NA Intergenic MIR3|SINE|MIR 271080 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 153.5-5 chr1 221389242 221389880 + 0.5 NA Intergenic Intergenic -53265 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 172.167-45 chr7 106483507 106483925 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 177442 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 157.333-7 chr10 7486435 7486881 + 0.5 NA Intergenic L1PB4|LINE|L1 -75172 NM_001029880 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 135.833-3 chr10 59684957 59685443 + 0.5 NA intron (NM_194298, intron 1 of 5) L1ME4b|LINE|L1 24691 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 138.333-51 chr17 58277397 58277794 + 0.5 NA intron (NM_000250, intron 7 of 11) intron (NM_000250, intron 7 of 11) 3340 NM_000250 4353 Hs.458272 NM_000250 ENSG00000005381 MPO - myeloperoxidase protein-coding 131.667-45 chr16 26734927 26735475 + 0.5 NA Intergenic Intergenic -331726 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 126.667-107 chr8 127074730 127075019 + 0.5 NA intron (NR_119373, intron 3 of 3) L2b|LINE|L2 -5000 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 187.667-22 chr15 83915284 83915809 + 0.5 NA intron (NM_207517, intron 16 of 29) L1MB8|LINE|L1 -164641 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 130.667-74 chr5 66243271 66243593 + 0.5 NA Intergenic Intergenic -33986 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 177.833-31 chr4 148506975 148507376 + 0.5 NA Intergenic Intergenic -62477 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 190-57 chr6 72549354 72549766 + 0.5 NA Intergenic Intergenic -72283 NM_001160132 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 122.5-95 chr8 24997286 24997600 + 0.5 NA Intergenic Intergenic -40574 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 131.833-69 chr8 103023156 103023462 + 0.5 NA intron (NM_001695, intron 1 of 12) L2b|LINE|L2 2226 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 116.833-14 chr11 116727933 116728325 + 0.5 NA Intergenic Intergenic 44858 NM_032725 84811 Hs.437341 NM_032725 ENSG00000137656 BUD13 Cwc26|fSAP71 BUD13 homolog protein-coding 157.333-65 chr6 71296152 71296559 + 0.5 NA exon (NM_024576, exon 4 of 7) exon (NM_024576, exon 4 of 7) 7544 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 155.5-54 chr7 72360088 72360668 + 0.5 NA intron (NM_001363460, intron 1 of 5) intron (NM_001363460, intron 1 of 5) -22987 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 126.167-47 chr2 209317243 209317594 + 0.5 NA Intergenic Intergenic -106629 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 155-57 chr4 141856502 141856919 + 0.5 NA Intergenic Intergenic 220127 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 133.333-5 chr1 170933425 170933815 + 0.5 NA Intergenic L1M4a2|LINE|L1 -1851 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 204.333-18 chr14 44440741 44441457 + 0.5 NA Intergenic L1PA16|LINE|L1 66184 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 171-34 chr3 97428402 97428987 + 0.5 NA intron (NM_001080448, intron 6 of 17) LTR16B1|LTR|ERVL -10913 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 120.167-14 chr11 94952441 94952826 + 0.5 NA Intergenic Intergenic 20923 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 142.833-80 chrX 152418357 152418740 + 0.5 NA intron (NM_000808, intron 1 of 9) L1ME3A|LINE|L1 -24056 NR_029522 406898 NR_029522 ENSG00000207818 MIR105-2 MIRN105-2|mir-105-2 microRNA 105-2 ncRNA 165.833-15 chr13 32228422 32228851 + 0.5 NA exon (NM_023037, exon 40 of 61) exon (NM_023037, exon 40 of 61) 83318 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1 like protein-coding 203.333-8 chr14 51863005 51863757 + 0.5 NA intron (NM_001243774, intron 1 of 2) intron (NM_001243774, intron 1 of 2) 2769 NM_001243773 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 135.667-17 chr10 76785501 76786033 + 0.5 NA Intergenic MIR3|SINE|MIR -102277 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 146-58 chr5 85650824 85651347 + 0.5 NA Intergenic MER58B|DNA|hAT-Charlie -631359 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 199.833-13 chr17 53942353 53942999 + 0.5 NA Intergenic Intergenic 119749 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 123.833-55 chr6 133248312 133248652 + 0.5 NA intron (NM_172103, intron 1 of 18) intron (NM_172103, intron 1 of 18) 6983 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 121.167-51 chr22 28569323 28569605 + 0.5 NA intron (NM_001145418, intron 2 of 22) L1PA15|LINE|L1 109595 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 123-77 chr6 56865944 56866411 + 0.5 NA intron (NM_001144769, intron 3 of 96) AluSx|SINE|Alu -14261 NM_001144770 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 118.667-94 chr5 107351306 107351750 + 0.5 NA Intergenic L1MA3|LINE|L1 319409 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 158.833-65 chrX 100382772 100383183 + 0.5 NA intron (NM_020766, intron 2 of 4) intron (NM_020766, intron 2 of 4) 27296 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 120.833-8 chr10 89531278 89531792 + 0.5 NA intron (NM_213606, intron 2 of 7) Tigger13a|DNA|TcMar-Tigger 4059 NM_213606 387700 Hs.530338 NM_213606 ENSG00000152779 SLC16A12 CJMG|CRT2|CTRCT47|MCT12 solute carrier family 16 member 12 protein-coding 155.5 chr1 28092738 28093155 + 0.5 NA Intergenic L1MB2|LINE|L1 -4309 NM_001282562 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 142.667-47 chr2 68201776 68202157 + 0.5 NA intron (NM_000945, intron 2 of 5) HAL1ME|LINE|L1 44078 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 136.5-51 chr2 149881645 149882090 + 0.5 NA Intergenic Intergenic -22676 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 123.667-51 chr2 121128480 121129091 + 0.5 NA Intergenic Intergenic 156417 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 126.833-63 chr7 94132907 94133393 + 0.5 NA Intergenic Intergenic -128795 NR_133909 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 250.167-18 chr8 68359046 68359884 + 0.5 NA intron (NR_146187, intron 1 of 13) intron (NR_146187, intron 1 of 13) -27974 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 138.667-23 chr12 117235294 117235709 + 0.5 NA intron (NM_001204213, intron 19 of 27) intron (NM_001204213, intron 19 of 27) -45031 NM_015002 23014 Hs.740376 NM_015002 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 143.5-79 chr7 48158871 48159504 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -12271 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 129.333-83 chr6 147155320 147155649 + 0.5 NA intron (NR_034115, intron 3 of 10) intron (NR_034115, intron 3 of 10) -3441 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 129.667-104 chr8 86698817 86699270 + 0.5 NA intron (NM_019098, intron 3 of 17) intron (NM_019098, intron 3 of 17) 44632 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 206-38 chr9 103975042 103975561 + 0.5 NA Intergenic Intergenic -24408 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 120-13 chr10 63026250 63026727 + 0.5 NA Intergenic L1MEg|LINE|L1 -106759 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 176.333-8 chr10 25750841 25751274 + 0.5 NA Intergenic L2a|LINE|L2 99345 NR_108067 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 124-14 chr10 53452344 53452735 + 0.5 NA Intergenic Intergenic -680839 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 150.833-19 chr19 46380140 46380576 + 0.5 NA intron (NM_001204284, intron 4 of 11) L1ME2|LINE|L1 33206 NM_032040 83987 Hs.97876 NM_032040 ENSG00000169515 CCDC8 3M3|PPP1R20|p90 coiled-coil domain containing 8 protein-coding 142.333-52 chr2 69503010 69503351 + 0.5 NA intron (NM_014911, intron 16 of 21) intron (NM_014911, intron 16 of 21) 16991 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 160-45 chr2 190691416 190692038 + 0.5 NA 3' UTR (NM_005966, exon 10 of 10) 3' UTR (NM_005966, exon 10 of 10) 32569 NM_001321315 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 118.5-53 chr2 149044471 149044785 + 0.5 NA intron (NM_001317006, intron 1 of 4) L1MCa|LINE|L1 5929 NM_177964 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 188-4 chr1 207306727 207307512 + 0.5 NA Intergenic HAL1|LINE|L1 -14559 NM_001114752 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 157.833-65 chr7 123522243 123522821 + 0.5 NA intron (NR_104245, intron 1 of 11) MIRb|SINE|MIR 10416 NR_104244 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 149.833-39 chr5 36889287 36889673 + 0.5 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 12711 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 119.667-88 chr6 77166373 77166659 + 0.5 NA Intergenic L1PA15-16|LINE|L1 297506 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 177.5-75 chr7 47154217 47154785 + 0.5 NA Intergenic Intergenic 310302 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 120-59 chr2 149653519 149653827 + 0.5 NA intron (NR_110240, intron 1 of 2) L2a|LINE|L2 -65898 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 236-2 chr10 32749784 32750595 + 0.5 NA intron (NM_001321115, intron 29 of 43) L1ME3B|LINE|L1 151283 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 133-6 chr1 201851299 201851670 + 0.5 NA intron (NM_018085, intron 4 of 23) intron (NM_018085, intron 4 of 23) -11889 NR_106797 102466724 NR_106797 ENSG00000277681 MIR6739 hsa-mir-6739 microRNA 6739 ncRNA 180.833-22 chr2 183111554 183112211 + 0.5 NA Intergenic L1MD1|LINE|L1 -5608 NM_001287584 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 113.833-95 chrX 119186058 119186487 + 0.5 NA Intergenic Intergenic -35693 NM_020721 57481 Hs.97594 NM_020721 ENSG00000250423 KIAA1210 - KIAA1210 protein-coding 153.833-30 chr2 10988888 10989413 + 0.5 NA Intergenic Intergenic 77216 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 175.5-42 chr3 117706504 117707057 + 0.5 NA Intergenic Intergenic -15855 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 160.667-31 chr17 50873774 50874390 + 0.5 NA Intergenic L1ME4a|LINE|L1 -6104 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 150.5-42 chr2 86449143 86449559 + 0.5 NA intron (NM_018433, intron 2 of 25) intron (NM_018433, intron 2 of 25) 7890 NM_001146688 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 114.167-30 chr14 50367449 50367931 + 0.5 NA intron (NM_001282236, intron 2 of 8) intron (NM_001282236, intron 2 of 8) 29191 NM_001367065 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 150.167-27 chr19 56420593 56420977 + 0.5 NA intron (NM_001159860, intron 4 of 4) L1ME2|LINE|L1 16453 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 115.5-70 chr4 36058705 36059170 + 0.5 NA intron (NR_146893, intron 32 of 36) L2a|LINE|L2 185002 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 122.333-110 chr8 87736501 87736922 + 0.5 NA Intergenic L1MEd|LINE|L1 137304 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 126-93 chr8 31670004 31670433 + 0.5 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 30466 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 131.333-24 chr13 95442171 95442738 + 0.5 NA intron (NM_182848, intron 1 of 4) intron (NM_182848, intron 1 of 4) 8855 NM_001160100 9071 Hs.534377 NM_006984 ENSG00000134873 CLDN10 CPETRL3|HELIX|OSP-L|OSPL claudin 10 protein-coding 121.5-64 chr3 29005959 29006333 + 0.5 NA Intergenic Intergenic 274793 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 139.667-39 chr17 64485523 64485823 + 0.5 NA intron (NM_007215, intron 5 of 7) intron (NM_007215, intron 5 of 7) 11381 NM_007215 11232 Hs.437009 NM_007215 ENSG00000256525 POLG2 HP55|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB DNA polymerase gamma 2, accessory subunit protein-coding 127.5-29 chr17 80020418 80020789 + 0.5 NA intron (NM_019020, intron 1 of 11) AluSx1|SINE|Alu 15269 NM_019020 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 176.667-66 chr6 15351664 15352115 + 0.5 NA intron (NM_001267040, intron 1 of 17) intron (NM_001267040, intron 1 of 17) 103034 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 131.167-6 chr1 210249328 210249767 + 0.5 NA Intergenic Intergenic -15662 NR_024337 574036 Hs.446946 NR_024337 ENSG00000203706 SERTAD4-AS1 C1orf133 SERTAD4 antisense RNA 1 ncRNA 167.833-4 chr11 19411691 19412123 + 0.5 NA intron (NM_001111018, intron 1 of 37) MIRc|SINE|MIR 61183 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 126 chr1 26124862 26125331 + 0.5 NA 3' UTR (NM_001243532, exon 3 of 3) 3' UTR (NM_001243532, exon 3 of 3) 13272 NM_001243533 149420 Hs.468801 NM_152835 ENSG00000175087 PDIK1L CLIK1L|STK35L2 PDLIM1 interacting kinase 1 like protein-coding 156.333-33 chr15 70196735 70197120 + 0.5 NA Intergenic Intergenic -99010 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 155.833-53 chr5 52501919 52502385 + 0.5 NA Intergenic Intergenic -285764 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 153.167-17 chr14 47535665 47536177 + 0.5 NA intron (NM_001113498, intron 1 of 16) MLT1H|LTR|ERVL-MaLR 139033 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 122.5-20 chr12 13618151 13618493 + 0.5 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -241577 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 148.333-108 chr8 134421963 134422459 + 0.5 NA Intergenic Intergenic -175860 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 163.667-66 chr6 71402585 71403164 + 0.5 NA TTS (NR_029504) TTS (NR_029504) 747 NR_029504 407029 NR_029504 ENSG00000207827 MIR30A MIRN30A|mir-30a microRNA 30a ncRNA 157.5-29 chr19 29333520 29333878 + 0.5 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -120548 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 129.333-29 chr14 62557850 62558211 + 0.5 NA Intergenic MIRb|SINE|MIR -418057 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 187.833-15 chr14 64394709 64395262 + 0.5 NA intron (NM_005956, intron 1 of 27) intron (NM_005956, intron 1 of 27) 6632 NM_001364837 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 156.167-31 chr17 53228530 53229063 + 0.5 NA Intergenic Intergenic 243291 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 142.667-87 chr6 44398424 44398833 + 0.5 NA intron (NM_001253, intron 5 of 15) intron (NM_001253, intron 5 of 15) 10922 NM_001253 988 Hs.485471 NM_001253 ENSG00000096401 CDC5L CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 cell division cycle 5 like protein-coding 219.833-16 chr4 31150878 31151473 + 0.5 NA Intergenic Intergenic -19969 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 114.167-2 chr1 50657148 50657437 + 0.5 NA intron (NM_007051, intron 7 of 18) intron (NM_007051, intron 7 of 18) -233849 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 186-31 chr3 157044091 157044832 + 0.5 NA intron (NM_001004316, intron 12 of 12) L3|LINE|CR1 -37380 NR_135546 105374177 Hs.634263 NR_135546 ENSG00000241544 LINC02029 - long intergenic non-protein coding RNA 2029 ncRNA 176.167-4 chr10 29005624 29006131 + 0.5 NA Intergenic AluY|SINE|Alu 159469 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 119.667-36 chr19 15458930 15459275 + 0.5 NA intron (NM_001348028, intron 6 of 10) AluSx1|SINE|Alu 5442 NM_001348028 64926 Hs.136979 NM_022904 ENSG00000105122 RASAL3 - RAS protein activator like 3 protein-coding 140.667-57 chr3 132346967 132347318 + 0.5 NA intron (NM_001292037, intron 6 of 8) MIR3|SINE|MIR 29735 NM_001134194 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 114.5-95 chr8 91373887 91374177 + 0.5 NA intron (NM_134266, intron 15 of 18) L1PA17|LINE|L1 124713 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 142-4 chr1 94628979 94629452 + 0.5 NA intron (NR_160780, intron 4 of 5) intron (NR_160780, intron 4 of 5) 85513 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 113.333-57 chr2 191383895 191384440 + 0.5 NA intron (NM_012223, intron 15 of 28) intron (NM_012223, intron 15 of 28) 138763 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 195-30 chr3 97304347 97304860 + 0.5 NA intron (NM_001080448, intron 5 of 17) L1PA10|LINE|L1 -135004 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 152.167-37 chr20 44827675 44828278 + 0.5 NA Intergenic L1ME3G|LINE|L1 -17430 NM_182970 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 131.667-62 chr2 138059431 138059770 + 0.5 NA Intergenic L2c|LINE|L2 -42284 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 118.833-66 chr8 77118470 77118888 + 0.5 NA Intergenic MIR|SINE|MIR -117635 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 128.833-36 chr17 61824889 61825253 + 0.5 NA intron (NM_032043, intron 6 of 19) AluYf1|SINE|Alu 38488 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 129.5-8 chr1 166094545 166094855 + 0.5 NA intron (NR_163271, intron 1 of 2) intron (NR_163271, intron 1 of 2) 60098 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 160.167-10 chr12 32534478 32534911 + 0.5 NA intron (NM_001304480, intron 1 of 16) intron (NM_001304480, intron 1 of 16) 401 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 144.333-73 chr6 50329450 50329782 + 0.5 NA Intergenic Intergenic -279687 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 155.833-55 chr5 54437292 54437657 + 0.5 NA Intergenic Intergenic -18225 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 133-52 chr21 16861520 16861873 + 0.5 NA Intergenic Intergenic 271459 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 135.5-6 chr1 219847428 219847914 + 0.5 NA Intergenic L1PB2|LINE|L1 80980 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 125.167-37 chr2 98214471 98214784 + 0.5 NA intron (NR_144297, intron 13 of 18) L1ME4b|LINE|L1 65094 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 136-29 chr17 72342832 72343335 + 0.5 NA non-coding (NR_135222, exon 1 of 4) non-coding (NR_135222, exon 1 of 4) 272 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 138.333-70 chr3 35891812 35892185 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 147522 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 174-62 chr9 90670235 90670738 + 0.5 NA Intergenic Intergenic -27662 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 189.5-49 chr5 75569945 75570613 + 0.5 NA intron (NM_016218, intron 4 of 14) intron (NM_016218, intron 4 of 14) -41197 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 161.667-82 chr7 116303825 116304236 + 0.5 NA Intergenic Intergenic -17303 NR_130922 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 138.167-45 chr2 191603866 191604491 + 0.5 NA Intergenic Intergenic -73894 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 114.333-121 chr8 115329677 115329935 + 0.5 NA Intergenic LTR12C|LTR|ERV1 338207 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 147.833-72 chrX 25574352 25574914 + 0.5 NA Intergenic Intergenic -558668 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 151.833-13 chr11 116367957 116368423 + 0.5 NA Intergenic MIR|SINE|MIR -271232 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 129.5-56 chr21 27562239 27562811 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -159854 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 168.5-45 chr5 4934574 4934984 + 0.5 NA Intergenic Intergenic -99580 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 117.333-12 chr1 233533491 233533846 + 0.5 NA Intergenic Intergenic -80438 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 136.667-61 chr3 67476496 67476897 + 0.5 NA intron (NM_001177599, intron 9 of 10) MER1A|DNA|hAT-Charlie 177918 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 170.333-58 chr5 148469176 148469756 + 0.5 NA intron (NM_199453, intron 5 of 6) intron (NM_199453, intron 5 of 6) 85508 NM_205836 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 171.167-35 chr3 98674596 98674970 + 0.5 NA Intergenic L1PA12|LINE|L1 -57453 NM_001323359 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 128.667-79 chr4 34031210 34031687 + 0.5 NA intron (NR_125902, intron 1 of 4) LTR16|LTR|ERVL 8445 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 118-105 chr6 50870488 50871012 + 0.5 NA Intergenic Intergenic 51879 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 130.833-31 chr2 76826649 76827189 + 0.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -159046 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 187.5 chr1 69590404 69590831 + 0.5 NA intron (NM_001366842, intron 1 of 7) intron (NM_001366842, intron 1 of 7) 21276 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 127.667-57 chr3 95361891 95362219 + 0.5 NA Intergenic Intergenic 321138 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 114.5-68 chr3 197180154 197180610 + 0.5 NA intron (NM_001290983, intron 5 of 25) intron (NM_001290983, intron 5 of 25) 3490 NM_001366221 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 186.333-50 chr6 38396376 38396827 + 0.5 NA intron (NM_052893, intron 7 of 11) LTR16D1|LTR|ERVL -84995 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 144.667-65 chr3 117376896 117377500 + 0.5 NA Intergenic Intergenic 313727 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 135-80 chr5 171011790 171012308 + 0.5 NA intron (NM_022897, intron 14 of 27) intron (NM_022897, intron 14 of 27) 150031 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 159.667-60 chr3 89661909 89662361 + 0.5 NA Intergenic Intergenic 554514 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 125.833-44 chr2 99371954 99372415 + 0.5 NA intron (NM_015904, intron 9 of 23) intron (NM_015904, intron 9 of 23) 34795 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 116.833-51 chr5 74276955 74277511 + 0.5 NA Intergenic L2a|LINE|L2 31092 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 141.5-37 chr17 69511710 69512179 + 0.5 NA intron (NM_001330450, intron 2 of 11) AluSx3|SINE|Alu 9682 NM_001330450 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 120-30 chr13 90481617 90482106 + 0.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR -11427 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 145.333-32 chr15 77020268 77020644 + 0.5 NA intron (NR_135552, intron 3 of 11) intron (NR_135552, intron 3 of 11) 25330 NM_001321135 9051 Hs.129758 NM_003978 ENSG00000140368 PSTPIP1 CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP proline-serine-threonine phosphatase interacting protein 1 protein-coding 174.833-2 chr1 45911476 45912179 + 0.5 NA intron (NM_001324320, intron 4 of 29) MIR|SINE|MIR 47479 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 117.333-68 chr3 41655408 41655709 + 0.5 NA intron (NR_136342, intron 28 of 34) AluJb|SINE|Alu 306545 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 145.833-80 chr9 37588832 37589161 + 0.5 NA intron (NM_001001790, intron 1 of 1) intron (NM_001001790, intron 1 of 1) 3601 NM_001001790 401505 Hs.130774 NM_001001790 ENSG00000175768 TOMM5 C9orf105|Tom5|bA613M10.3 translocase of outer mitochondrial membrane 5 protein-coding 136.667-94 chr7 80298763 80299252 + 0.5 NA Intergenic Intergenic 75432 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 134-48 chr17 34004957 34005307 + 0.5 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 151674 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 138.167-58 chr4 139703837 139704235 + 0.5 NA exon (NM_001204366, exon 5 of 6) exon (NM_001204366, exon 5 of 6) 38217 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 149.333-19 chr11 133513171 133513524 + 0.5 NA intron (NM_001012393, intron 1 of 7) MamGypsy2-I|LTR|Gypsy 19154 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 154.167-61 chr8 61547146 61547547 + 0.5 NA intron (NM_004318, intron 21 of 24) intron (NM_004318, intron 21 of 24) 142465 NM_001164752 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 118.833-28 chr16 63785301 63785626 + 0.5 NA Intergenic MER66C|LTR|ERV1 1336600 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 119.333-111 chr8 102254628 102255023 + 0.5 NA intron (NM_001282873, intron 58 of 58) MIR3|SINE|MIR 15374 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 126-60 chr3 96028611 96028943 + 0.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger -331187 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 128.667-88 chr4 98225400 98225900 + 0.5 NA Intergenic AluJo|SINE|Alu -35734 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 150.667-73 chr4 187631379 187631846 + 0.5 NA intron (NR_110436, intron 2 of 2) L1M3e|LINE|L1 41029 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 122.5-4 chr1 69977620 69977949 + 0.5 NA intron (NM_001370785, intron 8 of 26) MLT1I|LTR|ERVL-MaLR 58462 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 138.333-45 chr16 80664500 80664853 + 0.5 NA intron (NM_152342, intron 2 of 6) intron (NM_152342, intron 2 of 6) -91868 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 143.667-110 chr9 80765227 80765626 + 0.5 NA Intergenic Intergenic 790403 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 210.333-45 chrX 70560120 70560856 + 0.5 NA intron (NM_001003811, intron 26 of 30) L1ME3|LINE|L1 -104494 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 137.833-11 chr12 80548334 80548742 + 0.5 NA intron (NM_001145026, intron 24 of 44) intron (NM_001145026, intron 24 of 44) 104303 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 261-5 chr10 60267916 60268567 + 0.5 NA intron (NM_001204403, intron 6 of 43) intron (NM_001204403, intron 6 of 43) 121634 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 137-87 chr7 34807408 34807776 + 0.5 NA intron (NM_207172, intron 3 of 8) L1M6|LINE|L1 26739 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 145.667-99 chr8 92506883 92507439 + 0.5 NA Intergenic Intergenic 148333 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 194.167-26 chr4 98815568 98816024 + 0.5 NA Intergenic MER41-int|LTR|ERV1 113337 NM_001130678 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 147.833-66 chr8 121650129 121650541 + 0.5 NA Intergenic Intergenic -8895 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 181.667-35 chr20 54831820 54832501 + 0.5 NA Intergenic Intergenic 356567 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 119.833-81 chr7 132281546 132281813 + 0.5 NA intron (NM_020911, intron 4 of 31) Charlie7|DNA|hAT-Charlie 20818 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 130.833-28 chr2 43158485 43158814 + 0.5 NA Intergenic Intergenic -56204 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 179.5-18 chr2 69277362 69277766 + 0.5 NA Intergenic HAL1|LINE|L1 109663 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 155.333-42 chr2 6566555 6567038 + 0.5 NA Intergenic MER58A|DNA|hAT-Charlie 66991 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 124.5-62 chr5 142799521 142799886 + 0.5 NA intron (NM_001349547, intron 1 of 21) MSTD|LTR|ERVL-MaLR 28476 NM_001349547 23092 Hs.654668 NM_015071 ENSG00000145819 ARHGAP26 GRAF|GRAF1|OPHN1L|OPHN1L1 Rho GTPase activating protein 26 protein-coding 152-27 chr19 28006425 28006782 + 0.5 NA intron (NR_146733, intron 4 of 6) intron (NR_146733, intron 4 of 6) -212663 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 148.167-32 chr17 60817808 60818158 + 0.5 NA intron (NM_001330413, intron 7 of 25) AluSz|SINE|Alu 140132 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 125.833-4 chr1 164401800 164402171 + 0.5 NA Intergenic L1MB7|LINE|L1 -157375 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 126.167-36 chr19 30397238 30397655 + 0.5 NA intron (NM_014717, intron 1 of 4) L1MD2|LINE|L1 25062 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 183.333-4 chr1 110633515 110633881 + 0.5 NA Intergenic Intergenic -2258 NM_001204269 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 131.333-63 chr20 62615478 62615853 + 0.5 NA Intergenic L1MB3|LINE|L1 -26838 NM_016354 28231 Hs.235782 NM_016354 ENSG00000101187 SLCO4A1 OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12 solute carrier organic anion transporter family member 4A1 protein-coding 123.833-53 chr6 114826398 114826803 + 0.5 NA Intergenic Intergenic -763723 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 142.667-30 chr14 44909933 44910514 + 0.5 NA intron (NR_110050, intron 1 of 2) intron (NR_110050, intron 1 of 2) 1694 NR_110050 101927418 Hs.144809 NR_110050 ENSG00000258949 LOC101927418 - uncharacterized LOC101927418 ncRNA 176.167-6 chr10 77151657 77152080 + 0.5 NA intron (NM_001271519, intron 5 of 28) intron (NM_001271519, intron 5 of 28) 11037 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 153.667-58 chr4 167067755 167068166 + 0.5 NA intron (NM_016950, intron 2 of 11) intron (NM_016950, intron 2 of 11) 166466 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 141.167-27 chr15 58111563 58112161 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -26307 NM_001320636 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 120.833-27 chr2 55438417 55438867 + 0.5 NA Intergenic MER52D|LTR|ERV1 -18786 NM_018084 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 145-91 chr8 103963523 103963972 + 0.5 NA intron (NR_145711, intron 12 of 21) L1MC1|LINE|L1 144527 NM_001348502 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 215.667-25 chr2 199126478 199127275 + 0.5 NA Intergenic Intergenic 331063 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 174.333-69 chr8 109184274 109184669 + 0.5 NA Intergenic Intergenic 97843 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 150.167-30 chr2 106804920 106805301 + 0.5 NA non-coding (NR_136313, exon 5 of 5) non-coding (NR_136313, exon 5 of 5) 80918 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 180.667-14 chr12 19295053 19295708 + 0.5 NA intron (NM_001143821, intron 14 of 27) intron (NM_001143821, intron 14 of 27) 90055 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 120-78 chr3 191825725 191826065 + 0.5 NA Intergenic L1PREC2|LINE|L1 364732 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 115.5-37 chr15 50071247 50071514 + 0.5 NA intron (NR_073597, intron 3 of 26) intron (NR_073597, intron 3 of 26) 41999 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 115.333-42 chr17 65939882 65940381 + 0.5 NA intron (NM_001353129, intron 18 of 26) L1MA7|LINE|L1 -113588 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 132.5-59 chr3 131660449 131660835 + 0.5 NA intron (NM_130808, intron 7 of 15) MIRb|SINE|MIR -157671 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 138.167-74 chr7 86369847 86370243 + 0.5 NA Intergenic L1MA8|LINE|L1 -273864 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 208.5-40 chr6 47138810 47139577 + 0.5 NA Intergenic L2b|LINE|L2 -96861 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 126.5-42 chr2 80167340 80167665 + 0.5 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 137250 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 123-10 chr11 18287272 18287569 + 0.5 NA intron (NM_181507, intron 18 of 22) intron (NM_181507, intron 18 of 22) 21156 NM_199161 6288 Hs.632144 NM_000331 ENSG00000173432 SAA1 PIG4|SAA|SAA2|TP53I4 serum amyloid A1 protein-coding 127.333-13 chr10 56869657 56870011 + 0.5 NA Intergenic L1ME3|LINE|L1 434725 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 142.167-80 chr8 116556993 116557540 + 0.5 NA Intergenic Intergenic -94834 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 144-6 chr10 75976041 75976438 + 0.5 NA intron (NR_131178, intron 3 of 7) L2a|LINE|L2 193478 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 124-21 chr11 69421469 69421956 + 0.5 NA Intergenic MER113|DNA|hAT-Charlie -3943 NM_001319657 102724265 Hs.448669 NM_001319657 LOC102724265 - uncharacterized LOC102724265 protein-coding 150.5-12 chr11 6358749 6359238 + 0.5 NA Intergenic AluSq2|SINE|Alu -31481 NR_027400 6609 Hs.498173 NM_000543 ENSG00000166311 SMPD1 ASM|ASMASE|NPD sphingomyelin phosphodiesterase 1 protein-coding 194.167-15 chr2 101321273 101322046 + 0.5 NA Intergenic AluSz6|SINE|Alu 12209 NR_049881 100847007 NR_049881 ENSG00000264857 MIR5696 - microRNA 5696 ncRNA 139.333-87 chr6 162306141 162306469 + 0.5 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -420827 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 160.667-36 chr19 35368168 35368531 + 0.5 NA Intergenic L1PA17|LINE|L1 -2746 NM_001348195 2866 NM_005305 ENSG00000126251 GPR42 FFAR1L|FFAR3L|GPR41L|GPR42P G protein-coupled receptor 42 (gene/pseudogene) protein-coding 119.167-10 chr10 83834746 83835282 + 0.5 NA Intergenic L1MEc|LINE|L1 -157925 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 149.833-36 chr5 14329730 14330291 + 0.5 NA intron (NM_007118, intron 9 of 56) MER8|DNA|TcMar-Tigger -133973 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 124-29 chr13 92874176 92874557 + 0.5 NA Intergenic MIRb|SINE|MIR -152752 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 114.167-100 chr9 75849852 75850260 + 0.5 NA Intergenic Intergenic -40588 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 152.333-15 chr14 33128379 33128815 + 0.5 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 189718 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 118.667-113 chr8 85442379 85442871 + 0.5 NA intron (NR_121630, intron 2 of 2) AluJb|SINE|Alu 3766 NM_005181 761 Hs.82129 NM_005181 ENSG00000164879 CA3 CAIII|Car3 carbonic anhydrase 3 protein-coding 148.333-52 chr2 197946272 197946675 + 0.5 NA intron (NM_006226, intron 1 of 5) L1M5|LINE|L1 141880 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 205-3 chr12 33027429 33028067 + 0.5 NA Intergenic MIR|SINE|MIR -130902 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 178.667-49 chr4 140059252 140059961 + 0.5 NA intron (NM_018717, intron 1 of 4) intron (NM_018717, intron 1 of 4) -68409 NR_147610 101927516 Hs.662570 NR_147610 LOC101927516 - uncharacterized LOC101927516 ncRNA 177.333-55 chr6 36314789 36315256 + 0.5 NA TTS (NM_001010903) TTS (NM_001010903) 21866 NM_001010903 389384 Hs.162104 NM_001010903 ENSG00000189325 BNIP5 C6orf222 BCL2 interacting protein 5 protein-coding 118.333-18 chr11 83767203 83767686 + 0.5 NA intron (NM_001142699, intron 18 of 27) L2a|LINE|L2 -85019 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 167.333-35 chr2 112166347 112166849 + 0.5 NA intron (NM_001128165, intron 3 of 6) intron (NM_001128165, intron 3 of 6) 28213 NM_001128165 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 119.333-78 chr5 12033407 12033789 + 0.5 NA Intergenic L1MEi|LINE|L1 -129152 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 154.333-32 chr18 2340296 2340937 + 0.5 NA Intergenic Intergenic 230889 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 186-34 chr4 41004647 41005255 + 0.5 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -147759 NM_001166053 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 132.333-97 chr7 90314022 90314305 + 0.5 NA Intergenic L1MC3|LINE|L1 -21060 NR_110085 101927446 Hs.734999 NR_110085 ENSG00000105793 LOC101927446 - uncharacterized LOC101927446 ncRNA 132.167-30 chr18 6693503 6694009 + 0.5 NA Intergenic Intergenic -35960 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 128.333-66 chr2 148486541 148486948 + 0.5 NA intron (NM_018328, intron 11 of 14) L1ME3G|LINE|L1 -158007 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 227.833-3 chr11 114812811 114813411 + 0.5 NA Intergenic Intergenic 134584 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 227 chr1 172136391 172137265 + 0.5 NA TTS (NR_038397) TTS (NR_038397) -1980 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 139-73 chr7 90866708 90867202 + 0.5 NA intron (NM_012395, intron 5 of 13) intron (NM_012395, intron 5 of 13) 157139 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 178.167-42 chr7 13318986 13319527 + 0.5 NA Intergenic Intergenic 631623 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 123.667-66 chr3 29347136 29347557 + 0.5 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 66034 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 177.667-58 chr5 109577293 109577933 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -111753 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 156.667-38 chr16 27195189 27195737 + 0.5 NA Intergenic Kanga1a|DNA|TcMar-Tc2 -8063 NM_024773 79831 Hs.145717 NM_024773 ENSG00000155666 KDM8 JMJD5 lysine demethylase 8 protein-coding 132-55 chr3 100862363 100863021 + 0.5 NA intron (NM_001349332, intron 11 of 35) intron (NM_001349332, intron 11 of 35) 130798 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 130.667-43 chr2 235382664 235382993 + 0.5 NA Intergenic MIRb|SINE|MIR -111215 NM_014914 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 246.167-33 chrX 72167052 72168152 + 0.5 NA Intergenic L1MD1|LINE|L1 -14074 NM_001170747 5303 Hs.655623 NM_006223 ENSG00000102309 PIN4 EPVH|PAR14|PAR17 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 protein-coding 139.833-45 chr2 204249244 204249665 + 0.5 NA Intergenic Intergenic -296021 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 165.333-51 chr5 144587896 144588437 + 0.5 NA Intergenic Charlie1a|DNA|hAT-Charlie 382775 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 216-28 chr5 127438912 127439498 + 0.5 NA intron (NM_001256545, intron 17 of 24) intron (NM_001256545, intron 17 of 24) -78435 NM_130809 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 129-69 chr5 36546348 36546945 + 0.5 NA Intergenic Intergenic -59709 NM_001289939 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 149.5-4 chr1 155866954 155867254 + 0.5 NA intron (NM_152280, intron 1 of 3) AluSz|SINE|Alu 7537 NM_152280 23208 Hs.32984 NM_152280 ENSG00000132718 SYT11 SYT12|sytXI synaptotagmin 11 protein-coding 122.167-37 chr2 107369468 107370088 + 0.5 NA Intergenic AluSg4|SINE|Alu -20253 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 148.333-42 chr2 77108723 77109339 + 0.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 123066 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 125.833-37 chr2 56935661 56936085 + 0.5 NA Intergenic Intergenic -750103 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 148.167-57 chr4 137951102 137951710 + 0.5 NA Intergenic MER4B|LTR|ERV1 -137608 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 140.333-8 chr10 29640785 29641261 + 0.5 NA intron (NM_001323599, intron 3 of 38) intron (NM_001323599, intron 3 of 38) -6052 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 152.667-87 chr8 138624371 138624955 + 0.5 NA intron (NM_152888, intron 51 of 64) intron (NM_152888, intron 51 of 64) -126933 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 128.167-5 chr10 80934605 80935015 + 0.5 NA Intergenic L1PA13|LINE|L1 285013 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 123.333-30 chr12 42525945 42526221 + 0.5 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) -42073 NM_001144882 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 172-62 chr6 111369401 111370015 + 0.5 NA intron (NM_001286431, intron 16 of 34) L1ME4c|LINE|L1 110369 NM_153369 91749 Hs.400572 NM_153369 ENSG00000173214 MFSD4B KIAA1919|NaGLT1 major facilitator superfamily domain containing 4B protein-coding 126-53 chr20 41901956 41902353 + 0.5 NA Intergenic Tigger13a|DNA|TcMar-Tigger -283777 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 190.333-15 chr13 99482852 99483432 + 0.5 NA Intergenic L1ME3A|LINE|L1 16164 NR_110731 102725509 Hs.648968 NR_110731 LINC01232 TCONS_00021520 long intergenic non-protein coding RNA 1232 ncRNA 130.833-25 chr18 36062903 36063274 + 0.5 NA intron (NM_001303411, intron 1 of 7) intron (NM_001303411, intron 1 of 7) 4471 NM_018170 55197 Hs.464912 NM_018170 ENSG00000141425 RPRD1A HsT3101|P15RS regulation of nuclear pre-mRNA domain containing 1A protein-coding 144-3 chr10 30271032 30271482 + 0.5 NA Intergenic AluSg|SINE|Alu 59405 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 118.333-97 chr5 153404451 153404848 + 0.5 NA Intergenic Intergenic -85875 NM_001258019 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 150.167-18 chr15 76157415 76158089 + 0.5 NA intron (NM_152335, intron 4 of 10) AluJb|SINE|Alu 23734 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 125.833-15 chr11 81665954 81666511 + 0.5 NA Intergenic Intergenic 224604 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 152.333-19 chr14 95721014 95721461 + 0.5 NA intron (NR_148060, intron 2 of 2) L1M1|LINE|L1 5754 NR_148060 107984703 Hs.633538 NR_148060 LOC107984703 - uncharacterized LOC107984703 ncRNA 153.667-14 chr11 22977337 22977756 + 0.5 NA Intergenic MER77B|LTR|ERVL -117072 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 177.333-23 chr15 86523424 86523959 + 0.5 NA intron (NM_152336, intron 19 of 24) intron (NM_152336, intron 19 of 24) -206723 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 126.5-36 chr18 492235 492497 + 0.5 NA intron (NM_130386, intron 1 of 9) intron (NM_130386, intron 1 of 9) 8335 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 129.167-74 chr7 25098912 25099428 + 0.5 NA Intergenic Intergenic 26191 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 161.333-75 chr7 139590856 139591463 + 0.5 NA intron (NM_001113239, intron 12 of 14) intron (NM_001113239, intron 12 of 14) 67474 NM_001353368 154790 Hs.57806 NM_001080511 ENSG00000236279 CLEC2L - C-type lectin domain family 2 member L protein-coding 144.167-9 chr10 21375352 21375881 + 0.5 NA Intergenic Intergenic -2666 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 139.667-11 chr1 232429425 232429895 + 0.5 NA intron (NM_020808, intron 14 of 20) intron (NM_020808, intron 14 of 20) 85948 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 157-19 chr12 60035196 60035858 + 0.5 NA Intergenic Intergenic 346157 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 125.167-13 chr11 12846677 12847207 + 0.5 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 142606 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 145.5-30 chr2 7256003 7256481 + 0.5 NA Intergenic L2c|LINE|L2 -165019 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 195.833-34 chr8 143197155 143197705 + 0.5 NA Intergenic Intergenic -15788 NM_001301772 338328 Hs.426410 NM_178172 ENSG00000277494 GPIHBP1 GPI-HBP1|HYPL1D glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 protein-coding 129.833-75 chr9 122520780 122521205 + 0.5 NA TTS (NM_001004452) TTS (NM_001004452) 1851 NM_001004452 26219 Hs.632679 NM_001004452 ENSG00000239590 OR1J4 HSHTPCRX01|HTPCRX01|OR9-21 olfactory receptor family 1 subfamily J member 4 protein-coding 138.833-53 chr3 51761651 51761990 + 0.5 NA Intergenic L1M4|LINE|L1 17417 NM_001368369 440956 Hs.444316 NM_001143833 ENSG00000214686 IQCF6 - IQ motif containing F6 protein-coding 129.333-10 chr10 62700703 62701038 + 0.5 NA Intergenic Intergenic -103850 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 122.167-8 chr10 116001041 116001379 + 0.5 NA Intergenic Intergenic 193579 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 124.333-94 chr7 66343570 66343887 + 0.5 NA intron (NM_003596, intron 3 of 5) L1MCb|LINE|L1 56680 NR_026873 285908 Hs.50755 NM_181722 ENSG00000179406 LINC00174 NCRNA00174 long intergenic non-protein coding RNA 174 ncRNA 150-75 chr6 148959144 148959653 + 0.5 NA intron (NR_038408, intron 1 of 2) intron (NR_038408, intron 1 of 2) 5286 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 157.5-14 chr13 82795053 82795498 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 1087118 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 157.833-29 chr16 86914445 86914970 + 0.5 NA Intergenic Intergenic -143077 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 136.167-62 chr4 165058125 165058481 + 0.5 NA Intergenic AluJb|SINE|Alu 26304 NM_152620 166655 Hs.368004 NM_152620 ENSG00000176979 TRIM60 RNF129|RNF33 tripartite motif containing 60 protein-coding 116.167-6 chr1 151665035 151665300 + 0.5 NA intron (NM_030918, intron 5 of 11) intron (NM_030918, intron 5 of 11) 51636 NM_001172648 11189 Hs.26047 NM_007185 ENSG00000159409 CELF3 BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4 CUGBP Elav-like family member 3 protein-coding 205.333-8 chr11 79624044 79624869 + 0.5 NA Intergenic Intergenic -183426 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 257.667-2 chr1 196532314 196533124 + 0.5 NA intron (NM_001287820, intron 1 of 26) MIR1_Amn|SINE|MIR 49762 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 158.5-80 chr7 94007972 94008336 + 0.5 NA Intergenic MER45B|DNA|hAT-Tip100 -3799 NR_133909 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 129.667-92 chr7 17923302 17923765 + 0.5 NA intron (NM_001350862, intron 1 of 25) intron (NM_001350862, intron 1 of 25) 16961 NM_001350866 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 146.333-69 chr3 180687221 180687667 + 0.5 NA Intergenic FLAM_A|SINE|Alu -7955 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 132.5-15 chr12 20851440 20851766 + 0.5 NA intron (NM_001349920, intron 1 of 13) L1M3|LINE|L1 29055 NM_001349920 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 125.167-68 chr6 122120986 122121332 + 0.5 NA Intergenic Intergenic -278392 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 235-11 chr14 50515849 50516529 + 0.5 NA intron (NM_198794, intron 2 of 31) L2c|LINE|L2 16380 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 122.5-73 chr5 95954950 95955422 + 0.5 NA intron (NM_012081, intron 1 of 11) intron (NM_012081, intron 1 of 11) 6665 NM_012081 22936 Hs.192221 NM_012081 ENSG00000118985 ELL2 MRCCAT1 elongation factor for RNA polymerase II 2 protein-coding 127-2 chr1 169554298 169554645 + 0.5 NA intron (NM_000130, intron 7 of 24) L1ME4b|LINE|L1 32060 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 175.667-55 chr5 162747034 162747543 + 0.5 NA Intergenic L1MA9|LINE|L1 679646 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 154.667-55 chr5 160182623 160183171 + 0.5 NA Intergenic AluSx1|SINE|Alu -4484 NM_001130958 2172 Hs.519719 NM_001445 ENSG00000170231 FABP6 I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP fatty acid binding protein 6 protein-coding 116-75 chr5 56796762 56797075 + 0.5 NA Intergenic MamTip3|DNA|hAT-Tip100 -18631 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 160.5-14 chr15 61526492 61527109 + 0.5 NA Intergenic Intergenic -203118 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 167.5-63 chr8 113315100 113315546 + 0.5 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) 61829 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 237.833-7 chr2 57672265 57672935 + 0.5 NA Intergenic Intergenic -235051 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 123.333-87 chr5 121872066 121872521 + 0.5 NA Intergenic Intergenic 20411 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 130.667-30 chr15 58695403 58695873 + 0.5 NA intron (NM_001320570, intron 2 of 14) intron (NM_001320570, intron 2 of 14) -2031 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 154-81 chr8 113722374 113722774 + 0.5 NA Intergenic L1ME1|LINE|L1 -285635 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 136.667-31 chr17 58444790 58445207 + 0.5 NA intron (NM_001080439, intron 5 of 5) L1MB2|LINE|L1 -27416 NM_017763 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 140.333-64 chr5 27553258 27553731 + 0.5 NA Intergenic Intergenic 81202 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 129.5-37 chr18 73987953 73988512 + 0.5 NA Intergenic AluY|SINE|Alu 159602 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 186.167-20 chr15 50009515 50009971 + 0.5 NA intron (NR_073597, intron 7 of 26) Tigger15a|DNA|TcMar-Tigger 103636 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 145.167-51 chr4 40335656 40336145 + 0.5 NA exon (NM_017581, exon 2 of 5) exon (NM_017581, exon 2 of 5) 567 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 115.333-17 chr12 11858880 11859247 + 0.5 NA intron (NM_001987, intron 4 of 7) intron (NM_001987, intron 4 of 7) -190798 NM_001370268 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 177.167-49 chrX 71462375 71463014 + 0.5 NA intron (NR_104387, intron 38 of 39) L1ME4a|LINE|L1 29755 NR_002226 27160 Hs.721806 NR_002226 ENSG00000243468 INGX ING1-like|ING2 inhibitor of growth family, X-linked (pseudogene) pseudo 129.333-25 chr14 41216200 41216644 + 0.5 NA Intergenic AluSq2|SINE|Alu 261711 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 158.5-48 chr22 27598343 27598891 + 0.5 NA Intergenic Intergenic 203139 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 127.5-51 chr4 35818058 35818362 + 0.5 NA Intergenic Intergenic 425729 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 119.667-33 chr18 22370888 22371189 + 0.5 NA Intergenic L3|LINE|CR1 46877 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 155.833-49 chr4 42209945 42210658 + 0.5 NA Intergenic Intergenic -57646 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 177-18 chr15 46140286 46140724 + 0.5 NA Intergenic L1MEj|LINE|L1 435310 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 131.167-40 chr2 66925014 66925485 + 0.5 NA intron (NR_110169, intron 1 of 4) intron (NR_110169, intron 1 of 4) -2759 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 170.667-26 chr16 86652932 86653502 + 0.5 NA Intergenic Intergenic 68742 NR_135181 101928614 Hs.399823 NR_135181 ENSG00000260026 LINC02189 - long intergenic non-protein coding RNA 2189 ncRNA 174.667-53 chr5 121896938 121897633 + 0.5 NA Intergenic Intergenic 45403 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 127.833-17 chr13 22874625 22874963 + 0.5 NA Intergenic LTR84a|LTR|ERVL 23387 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 138.833-9 chr10 23220348 23220671 + 0.5 NA intron (NM_001365862, intron 15 of 15) intron (NM_001365862, intron 15 of 15) 28197 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 120.333-126 chr9 129365962 129366453 + 0.5 NA Intergenic L1M6|LINE|L1 29284 NR_120685 100506119 Hs.624047 NR_120685 ENSG00000233901 LINC01503 - long intergenic non-protein coding RNA 1503 ncRNA 165.333-68 chr7 110943627 110944128 + 0.5 NA intron (NM_032549, intron 4 of 5) intron (NM_032549, intron 4 of 5) -147129 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 177.667-76 chrX 128481397 128481851 + 0.5 NA Intergenic HAL1b|LINE|L1 -429221 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 180.5-28 chr2 54795700 54796297 + 0.5 NA intron (NM_001039753, intron 1 of 40) intron (NM_001039753, intron 1 of 40) 70986 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 184.833-8 chr14 60801209 60801737 + 0.5 NA intron (NM_001177963, intron 3 of 6) L1MA7|LINE|L1 66712 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 144.5-20 chr12 56530416 56531016 + 0.5 NA intron (NM_002898, intron 1 of 13) intron (NM_002898, intron 1 of 13) 8896 NM_002898 5939 Hs.505729 NM_002898 ENSG00000076067 RBMS2 SCR3 RNA binding motif single stranded interacting protein 2 protein-coding 172.667-60 chr4 46498806 46499272 + 0.5 NA Intergenic Intergenic -108911 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 130.833-69 chr8 79527789 79528100 + 0.5 NA Intergenic Intergenic -83173 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 143.833-46 chr7 23059757 23060367 + 0.5 NA Intergenic Intergenic 45641 NR_046220 100775104 NR_046220 ENSG00000230658 KLHL7-DT KLHL7-AS1|PLATAK KLHL7 divergent transcript ncRNA 114.333-30 chr12 71612548 71612859 + 0.5 NA intron (NM_144982, intron 31 of 34) intron (NM_144982, intron 31 of 34) 51145 NM_144982 196441 Hs.245798 NM_144982 ENSG00000133858 ZFC3H1 CCDC131|CSRC2|PSRC2 zinc finger C3H1-type containing protein-coding 156-69 chr5 80099708 80100257 + 0.5 NA Intergenic Charlie4z|DNA|hAT-Charlie -16317 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 169.333-54 chr4 60222176 60222645 + 0.5 NA Intergenic Intergenic -700209 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 116.667-45 chr16 83438990 83439377 + 0.5 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -69163 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 153.667-29 chr16 51010830 51011242 + 0.5 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) -6722 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 122.667-71 chr3 147703771 147704076 + 0.5 NA Intergenic L1MB7|LINE|L1 282596 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 134.333-105 chr9 28522791 28523175 + 0.5 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 196322 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 149.667-78 chr9 30426593 30426962 + 0.5 NA Intergenic L1MA3|LINE|L1 -18323 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 130.167-80 chrX 17694339 17694966 + 0.5 NA intron (NM_001291868, intron 3 of 7) MIR|SINE|MIR -42797 NM_001037535 6322 Hs.109655 NM_006746 ENSG00000047634 SCML1 - Scm polycomb group protein like 1 protein-coding 147.167-24 chr16 88707446 88707900 + 0.5 NA intron (NM_001318513, intron 2 of 13) L2c|LINE|L2 1170 NM_001012759 348180 Hs.592074 NM_001012759 ENSG00000174177 CTU2 C16orf84|MFRG|NCS2|UPF0432 cytosolic thiouridylase subunit 2 protein-coding 117.333-29 chr14 42994501 42994933 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL 1387861 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 141.667-118 chr9 131860745 131861235 + 0.5 NA intron (NM_001253881, intron 6 of 6) intron (NM_001253881, intron 6 of 6) -121046 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 126.167-71 chr5 57436747 57437285 + 0.5 NA Intergenic Intergenic 45795 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 179.833-29 chr5 132974072 132974535 + 0.5 NA Intergenic Cheshire|DNA|hAT-Charlie -10669 NM_014423 27125 Hs.519313 NM_014423 ENSG00000072364 AFF4 AF5Q31|CHOPS|MCEF AF4/FMR2 family member 4 protein-coding 256.833-12 chr5 108663692 108664568 + 0.5 NA Intergenic MIR3|SINE|MIR 64131 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 153-55 chr8 122877441 122877918 + 0.5 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 96024 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 136.833-32 chr2 84423896 84424519 + 0.5 NA intron (NM_003849, intron 8 of 8) intron (NM_003849, intron 8 of 8) 35073 NM_003849 8802 Hs.270428 NM_003849 ENSG00000163541 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase alpha subunit protein-coding 145.667-69 chr4 35061477 35061854 + 0.5 NA Intergenic L1PA16|LINE|L1 -791918 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 139-55 chr5 144189538 144190044 + 0.5 NA intron (NM_020768, intron 2 of 3) intron (NM_020768, intron 2 of 3) -15600 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 187.333-14 chr11 84131308 84131881 + 0.5 NA intron (NM_001142699, intron 9 of 27) intron (NM_001142699, intron 9 of 27) 141686 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 134.5-76 chr9 27400240 27400583 + 0.5 NA intron (NM_024761, intron 2 of 3) L2c|LINE|L2 -103261 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 148.5-6 chr1 183322326 183322751 + 0.5 NA intron (NM_015039, intron 1 of 10) intron (NM_015039, intron 1 of 10) -17664 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 118.5-48 chr2 8832968 8833449 + 0.5 NA intron (NM_001348732, intron 1 of 28) L1MA4|LINE|L1 4405 NR_145964 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 116.167-72 chr7 55088488 55088882 + 0.5 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) -21154 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 165.667-9 chr1 242857990 242858437 + 0.5 NA Intergenic Intergenic 243531 NR_029401 731275 Hs.722350 NR_029401 ENSG00000214837 LINC01347 - long intergenic non-protein coding RNA 1347 ncRNA 121.667-54 chr2 119686768 119687128 + 0.5 NA intron (NR_148341, intron 3 of 16) intron (NR_148341, intron 3 of 16) 7747 NM_001105199 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 131.833-5 chr10 12665031 12665444 + 0.5 NA intron (NM_001351032, intron 4 of 11) intron (NM_001351032, intron 4 of 11) -12040 NR_039701 100616320 NR_039701 ENSG00000283699 MIR4481 - microRNA 4481 ncRNA 124.167-30 chr15 68938983 68939293 + 0.5 NA intron (NM_001184780, intron 1 of 15) intron (NM_001184780, intron 1 of 15) 8613 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 117.833-40 chr2 6560075 6560501 + 0.5 NA Intergenic L2a|LINE|L2 73499 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 162.333-36 chr2 188277888 188278334 + 0.5 NA intron (NR_126396, intron 1 of 2) intron (NR_126396, intron 1 of 2) 9580 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 125.167-89 chr9 82810540 82810919 + 0.5 NA Intergenic MIRb|SINE|MIR 252413 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 122.667-88 chr5 168008029 168008355 + 0.5 NA intron (NM_001080428, intron 3 of 24) intron (NM_001080428, intron 3 of 24) -157653 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 195.333-38 chr4 48127380 48128006 + 0.5 NA intron (NM_003328, intron 1 of 14) intron (NM_003328, intron 1 of 14) 6557 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 150.667-30 chr14 63728261 63728646 + 0.5 NA promoter-TSS (NM_030791).2 promoter-TSS (NM_030791).2 -388 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 159.333-74 chrX 42617603 42618063 + 0.5 NA Intergenic Intergenic 160330 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 122.167-80 chrX 67260438 67260762 + 0.5 NA Intergenic Intergenic -283421 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 124.167-17 chr12 25746780 25747080 + 0.5 NA Intergenic Intergenic -98352 NM_001145727 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 171-12 chr12 91095764 91096149 + 0.5 NA Intergenic AluSc|SINE|Alu 15538 NM_002345 4060 Hs.406475 NM_002345 ENSG00000139329 LUM LDC|SLRR2D lumican protein-coding 117.333-114 chr9 18050124 18050515 + 0.5 NA Intergenic Intergenic -423834 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 135.5-81 chr8 127654785 127655277 + 0.5 NA Intergenic AluSz6|SINE|Alu 78936 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 121.167-56 chr3 117739115 117739670 + 0.5 NA Intergenic Intergenic -48467 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 126.5-33 chr16 64842272 64842642 + 0.5 NA Intergenic Intergenic 279606 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 145.333-69 chr5 176455462 176456051 + 0.5 NA intron (NM_014613, intron 1 of 10) AluSx1|SINE|Alu 7371 NM_014613 23197 Hs.484242 NM_014613 ENSG00000113194 FAF2 ETEA|UBXD8|UBXN3B Fas associated factor family member 2 protein-coding 201.833-2 chr10 80493492 80493931 + 0.5 NA intron (NM_001128309, intron 2 of 5) L1MB3|LINE|L1 25448 NM_001351272 81619 Hs.308615 NM_030927 ENSG00000108219 TSPAN14 DC-TM4F2|TM4SF14|tspan-14 tetraspanin 14 protein-coding 121.333-75 chr4 108197420 108197765 + 0.5 NA Intergenic L1MD3|LINE|L1 25472 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 163.167-37 chr5 146132423 146132888 + 0.5 NA intron (NM_016460, intron 22 of 30) MIRb|SINE|MIR -27078 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 150.167-12 chr13 67032169 67032683 + 0.5 NA intron (NM_001318372, intron 2 of 4) AluJb|SINE|Alu 41540 NR_046637 100874087 Hs.606903 NR_046637 ENSG00000233840 PCDH9-AS4 - PCDH9 antisense RNA 4 ncRNA 127.833-13 chr12 10509287 10509593 + 0.5 NA intron (NM_001357731, intron 1 of 1) intron (NM_001357731, intron 1 of 1) 3547 NM_001357731 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 141.667-119 chrX 67538772 67539219 + 0.5 NA Intergenic L2c|LINE|L2 -5026 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 130.167-18 chr12 116771082 116771415 + 0.5 NA intron (NM_001109903, intron 6 of 11) AluJb|SINE|Alu 32933 NM_032814 84900 Hs.437195 NM_032814 ENSG00000135119 RNFT2 TMEM118 ring finger protein, transmembrane 2 protein-coding 131.667-19 chr11 44365651 44366050 + 0.5 NA Intergenic Intergenic -55711 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 123.5-33 chr17 60700154 60700500 + 0.5 NA intron (NM_001330413, intron 4 of 25) intron (NM_001330413, intron 4 of 25) 22476 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 135.167-2 chr1 38954183 38954551 + 0.5 NA Intergenic AluSp|SINE|Alu -12537 NM_017821 54933 Hs.524626 NM_017821 ENSG00000158315 RHBDL2 RRP2 rhomboid like 2 protein-coding 118-87 chr4 102861795 102862249 + 0.5 NA intron (NM_181890, intron 1 of 7) AluJr4|SINE|Alu 6871 NM_181893 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 120.333-108 chr7 7524761 7525135 + 0.5 NA intron (NM_001037763, intron 3 of 34) intron (NM_001037763, intron 3 of 34) 10925 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 140.333-73 chr6 62903705 62904126 + 0.5 NA Intergenic L1ME3A|LINE|L1 416062 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 127-24 chr13 80791480 80791945 + 0.5 NA Intergenic MLT2B4|LTR|ERVL -226679 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 174.5-30 chr4 48006843 48007478 + 0.5 NA intron (NM_000087, intron 2 of 10) MER4-int|LTR|ERV1 5785 NM_000087 1259 Hs.1323 NM_000087 ENSG00000198515 CNGA1 CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 cyclic nucleotide gated channel alpha 1 protein-coding 186.833-11 chr13 89071540 89072004 + 0.5 NA Intergenic LTR16A|LTR|ERVL -163519 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 171-10 chr12 6509457 6509978 + 0.5 NA promoter-TSS (NR_004387) promoter-TSS (NR_004387) -505 NR_004387 692148 NR_004387 ENSG00000239002 SCARNA10 U85 small Cajal body-specific RNA 10 ncRNA 115-64 chr5 121616134 121616401 + 0.5 NA Intergenic Intergenic -235615 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 159.667-82 chr7 7181467 7182144 + 0.5 NA promoter-TSS (NM_020156) promoter-TSS (NM_020156) -810 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 118.5-31 chr14 74481476 74481891 + 0.5 NA intron (NM_001363688, intron 3 of 3) intron (NM_001363688, intron 3 of 3) -1479 NR_039858 100616211 NR_039858 ENSG00000283944 MIR4709 mir-4709 microRNA 4709 ncRNA 124.5-8 chr10 73273810 73274174 + 0.5 NA intron (NM_001367801, intron 24 of 27) intron (NM_001367801, intron 24 of 27) 21251 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 159.833-7 chr1 119064827 119065242 + 0.5 NA intron (NM_015836, intron 2 of 5) L1ME3Cz|LINE|L1 17629 NR_126447 104472716 Hs.689536 NR_126447 WARS2-IT1 - WARS2 intronic transcript 1 ncRNA 126-20 chr11 124295454 124295772 + 0.5 NA Intergenic Intergenic 15153 NM_001002917 283159 Hs.504211 NM_001002917 ENSG00000196341 OR8D1 JCG9|OR8D3|OST004|PDJ9J14 olfactory receptor family 8 subfamily D member 1 protein-coding 137.667-14 chr10 118581881 118582326 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 13545 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 148-50 chr3 69717969 69718352 + 0.5 NA Intergenic Intergenic -21304 NM_001354605 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 131.667-118 chr7 24609757 24610229 + 0.5 NA intron (NM_001303037, intron 1 of 11) intron (NM_001303037, intron 1 of 11) 36541 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 136.667-115 chr9 100405996 100406421 + 0.5 NA Intergenic L1ME2|LINE|L1 -21005 NM_080655 91283 Hs.530272 NM_080655 ENSG00000066697 MSANTD3 C9orf30|L8 Myb/SANT DNA binding domain containing 3 protein-coding 141.167-74 chr8 119891622 119892163 + 0.5 NA intron (NM_001283012, intron 1 of 6) intron (NM_001283012, intron 1 of 6) 18170 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 179.833-9 chr13 113319506 113320006 + 0.5 NA intron (NM_005561, intron 5 of 8) intron (NM_005561, intron 5 of 8) 22517 NM_005561 3916 Hs.494419 NM_005561 ENSG00000185896 LAMP1 CD107a|LAMPA|LGP120 lysosomal associated membrane protein 1 protein-coding 224.667-23 chr3 120936287 120936889 + 0.5 NA intron (NR_145517, intron 2 of 8) L1MCa|LINE|L1 27911 NM_001348343 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5 like protein-coding 153.167-65 chrX 53700431 53700972 + 0.5 NA Intergenic Intergenic -13982 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 141.667-113 chr9 17128608 17128969 + 0.5 NA Intergenic Intergenic -6252 NM_001365029 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 122.833-71 chr5 38536980 38537324 + 0.5 NA intron (NM_002310, intron 1 of 19) intron (NM_002310, intron 1 of 19) 19494 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 169.667-38 chr2 55679207 55680082 + 0.5 NA intron (NM_033109, intron 8 of 27) intron (NM_033109, intron 8 of 27) 14200 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 150.667-8 chr1 166372941 166373355 + 0.5 NA Intergenic AluSc|SINE|Alu 116891 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 184.167-34 chr3 179365285 179365830 + 0.5 NA intron (NM_033540, intron 7 of 17) AluJb|SINE|Alu 17848 NM_033540 55669 Hs.478383 NM_017927 ENSG00000171109 MFN1 hfzo1|hfzo2 mitofusin 1 protein-coding 121.833-73 chr8 19799698 19800156 + 0.5 NA Intergenic Intergenic -17222 NR_148451 55174 Hs.512627 NM_018142 ENSG00000104613 INTS10 C8orf35|INT10 integrator complex subunit 10 protein-coding 118.5-56 chr2 210415003 210415395 + 0.5 NA intron (NR_110606, intron 1 of 4) L1PA15|LINE|L1 61506 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 158.167-27 chr2 161804362 161804971 + 0.5 NA intron (NM_001354443, intron 4 of 25) intron (NM_001354443, intron 4 of 25) 180250 NM_001354445 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 200.333-33 chr6 110872452 110872910 + 0.5 NA intron (NM_001287215, intron 1 of 8) intron (NM_001287215, intron 1 of 8) -2103 NM_001287216 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 145-4 chr1 49702379 49702865 + 0.5 NA intron (NM_001323575, intron 2 of 12) L1M4|LINE|L1 -230537 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 152.5-71 chr8 135800693 135801403 + 0.5 NA Intergenic L1ME3F|LINE|L1 343592 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 114-61 chr20 34717043 34717300 + 0.5 NA intron (NM_001242539, intron 11 of 11) AluSp|SINE|Alu 12452 NM_001329431 58476 Hs.516994 NM_021202 ENSG00000078804 TP53INP2 C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1 tumor protein p53 inducible nuclear protein 2 protein-coding 158.5-23 chr14 66429290 66429773 + 0.5 NA Intergenic AluJb|SINE|Alu -56840 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 117.833-26 chr14 45040249 45040738 + 0.5 NA intron (NR_131765, intron 11 of 19) L1M5|LINE|L1 -43623 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 170.167-22 chr15 83867084 83867550 + 0.5 NA intron (NM_207517, intron 8 of 29) intron (NM_207517, intron 8 of 29) -212870 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 136.667-24 chr15 58737248 58737589 + 0.5 NA intron (NM_001320570, intron 1 of 14) intron (NM_001320570, intron 1 of 14) 12289 NM_001320570 102 Hs.172028 NM_001110 ENSG00000137845 ADAM10 AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz ADAM metallopeptidase domain 10 protein-coding 125.667-67 chr20 45740177 45740618 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 18050 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 141.5-58 chr3 15508334 15508678 + 0.5 NA intron (NM_080539, intron 1 of 15) intron (NM_080539, intron 1 of 15) -9634 NM_080538 8292 Hs.146735 NM_005677 ENSG00000206561 COLQ CMS5|EAD collagen like tail subunit of asymmetric acetylcholinesterase protein-coding 150.5-36 chr18 56107543 56108105 + 0.5 NA intron (NR_040026, intron 3 of 8) intron (NR_040026, intron 3 of 8) 29712 NR_040025 100505474 Hs.662191 NR_040025 ENSG00000267712 LINC01539 - long intergenic non-protein coding RNA 1539 ncRNA 180.667-31 chr19 27624889 27625514 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -168230 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 205.333-35 chr22 28270624 28271408 + 0.5 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -188853 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 163.833-34 chr2 149103902 149104347 + 0.5 NA intron (NM_001317004, intron 1 of 6) L1ME1|LINE|L1 -14050 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 157.5-35 chr2 169838614 169839215 + 0.5 NA intron (NM_172070, intron 1 of 38) L1MA4|LINE|L1 11406 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 149.667-81 chr9 90122295 90122845 + 0.5 NA Intergenic L1M4c|LINE|L1 -81071 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 139.5-7 chr1 200830788 200831155 + 0.5 NA intron (NM_001297707, intron 5 of 17) intron (NM_001297707, intron 5 of 17) -42010 NM_005298 2848 Hs.534316 NM_005298 ENSG00000170128 GPR25 - G protein-coupled receptor 25 protein-coding 210.667-12 chr14 41897010 41897513 + 0.5 NA intron (NR_144388, intron 4 of 5) intron (NR_144388, intron 4 of 5) 290405 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 152.5-2 chr1 119142038 119142776 + 0.5 NA intron (NR_125975, intron 2 of 6) intron (NR_125975, intron 2 of 6) -1735 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 134.333-15 chr10 90514123 90514706 + 0.5 NA intron (NR_110657, intron 2 of 6) intron (NR_110657, intron 2 of 6) 26391 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 168.333-50 chr7 62972066 62972613 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 331717 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 136.667-11 chr10 62891279 62891648 + 0.5 NA Intergenic Intergenic -72296 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 117-127 chr9 71137363 71137694 + 0.5 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -15907 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 130.667-93 chr8 107957727 107958280 + 0.5 NA intron (NM_001282863, intron 4 of 4) intron (NM_001282863, intron 4 of 4) 123936 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 145-62 chr4 66299081 66299411 + 0.5 NA Intergenic Intergenic 22422 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 116.5-34 chr2 41506063 41506553 + 0.5 NA Intergenic Intergenic -371247 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 156.667-71 chr5 114944126 114944480 + 0.5 NA Intergenic MIR3|SINE|MIR -170890 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 145.333-30 chr15 49686264 49686752 + 0.5 NA Intergenic AluSz6|SINE|Alu 65460 NM_001144955 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 121-28 chr16 35404851 35405128 + 0.5 NA Intergenic Intergenic 41458 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 180.167-55 chr8 16344308 16344715 + 0.5 NA Intergenic Intergenic -151720 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 118.5-21 chr11 111732929 111733179 + 0.5 NA intron (NM_181699, intron 15 of 15) intron (NM_181699, intron 15 of 15) 33335 NM_181700 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 117.167-41 chr2 73708480 73708878 + 0.5 NA Intergenic Intergenic -7339 NR_132338 51471 Hs.278983 NM_016347 ENSG00000204872 NAT8B CML2|Hcml2|NAT8BP N-acetyltransferase 8B (putative, gene/pseudogene) protein-coding 134.167-32 chr18 896332 896725 + 0.5 NA Intergenic Intergenic -8343 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 173-50 chr6 100938221 100938921 + 0.5 NA Intergenic Intergenic -57199 NM_022091 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 169.5-24 chr15 69272380 69272907 + 0.5 NA TTS (NM_015554) TTS (NM_015554) -26269 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 152.833-47 chr3 143052777 143053109 + 0.5 NA intron (NM_001080415, intron 25 of 27) intron (NM_001080415, intron 25 of 27) 51373 NM_001320222 23350 Hs.596572 NM_001080415 ENSG00000163714 U2SURP SR140|fSAPa U2 snRNP associated SURP domain containing protein-coding 158-7 chr10 6776122 6776553 + 0.5 NA intron (NR_108074, intron 1 of 1) intron (NR_108074, intron 1 of 1) 2843 NR_108074 100652997 Hs.255086 NR_108074 ENSG00000281186 LINC00706 - long intergenic non-protein coding RNA 706 ncRNA 183.5-28 chr2 16613445 16614087 + 0.5 NA intron (NM_030797, intron 2 of 11) intron (NM_030797, intron 2 of 11) 52068 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 219.5-42 chr7 112399527 112400426 + 0.5 NA Intergenic Intergenic -23168 NM_001197080 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 136-91 chrX 42129996 42130565 + 0.5 NA Intergenic L2a|LINE|L2 -206726 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 114-97 chr8 79236544 79236863 + 0.5 NA Intergenic Intergenic -95485 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 163.833-24 chr16 5525799 5526200 + 0.5 NA Intergenic Intergenic 90251 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 117.167-11 chr11 12279359 12279697 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -7372 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 116.833-8 chr10 104540211 104540641 + 0.5 NA Intergenic Intergenic -60151 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 178.167-31 chr20 55470339 55471096 + 0.5 NA Intergenic Intergenic -43520 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 134.167-39 chr2 35681582 35682056 + 0.5 NA Intergenic Intergenic 210414 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 182.333-18 chr14 56146883 56147369 + 0.5 NA intron (NM_021255, intron 1 of 5) L1ME1|LINE|L1 28715 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 114-82 chr5 150146322 150146714 + 0.5 NA intron (NM_002609, intron 1 of 22) MIRb|SINE|MIR 9327 NR_149150 5159 Hs.509067 NM_002609 ENSG00000113721 PDGFRB CD140B|IBGC4|IMF1|JTK12|KOGS|PDGFR|PDGFR-1|PDGFR1|PENTT platelet derived growth factor receptor beta protein-coding 116.167-33 chr2 30633168 30633659 + 0.5 NA intron (NM_182551, intron 6 of 6) AluSc|SINE|Alu 174033 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 140.833-14 chr12 54628004 54628494 + 0.5 NA Intergenic MSTC-int|LTR|ERVL-MaLR 6646 NM_033277 90070 Hs.307096 NM_033277 ENSG00000135413 LACRT - lacritin protein-coding 138-117 chrX 79126190 79126581 + 0.5 NA Intergenic L1MB8|LINE|L1 -44587 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 130.5 chr1 71237168 71237566 + 0.5 NA non-coding (NR_046217, exon 4 of 4) non-coding (NR_046217, exon 4 of 4) 156043 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 148-72 chr6 62676715 62677179 + 0.5 NA Intergenic Intergenic -390720 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 169.5-12 chr11 103145983 103146763 + 0.5 NA intron (NM_001377, intron 18 of 88) intron (NM_001377, intron 18 of 88) 36947 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 186.333-38 chr22 28266020 28266663 + 0.5 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -193528 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 139.333-92 chr8 138571694 138572231 + 0.5 NA Intergenic L2c|LINE|L2 -74232 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 156.167-7 chr10 80828496 80828991 + 0.5 NA Intergenic Intergenic 178946 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 147.833-48 chr3 151456097 151456537 + 0.5 NA intron (NM_178822, intron 2 of 5) L4_A_Mam|LINE|RTE-X 2392 NM_178822 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 114-98 chr8 91073583 91073970 + 0.5 NA intron (NM_001286745, intron 2 of 7) intron (NM_001286745, intron 2 of 7) 3432 NM_016023 51633 Hs.30532 NM_016023 ENSG00000155100 OTUD6B CGI-77|DUBA-5|DUBA5|IDDFSDA OTU domain containing 6B protein-coding 181.5-30 chr2 134675906 134676500 + 0.5 NA intron (NM_030923, intron 2 of 7) MER63A|DNA|hAT-Blackjack 42797 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 194.5-16 chr2 68477604 68478375 + 0.5 NA intron (NM_173545, intron 1 of 9) THE1B|LTR|ERVL-MaLR 10404 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 160.833-36 chr4 37424501 37425034 + 0.5 NA intron (NM_001144990, intron 3 of 6) intron (NM_001144990, intron 3 of 6) -29158 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 202.833-8 chr14 60427685 60428519 + 0.5 NA Intergenic L1MA4A|LINE|L1 57961 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 142.5-2 chr1 76621026 76621420 + 0.5 NA intron (NR_146056, intron 4 of 5) intron (NR_146056, intron 4 of 5) 158044 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 208.833-5 chr10 126973942 126974737 + 0.5 NA intron (NM_001290223, intron 2 of 51) intron (NM_001290223, intron 2 of 51) 68930 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 169.333-77 chr9 97923412 97924007 + 0.5 NA Intergenic Intergenic -1139 NM_016481 51531 Hs.9196 NM_016481 ENSG00000136932 TRMO C9orf156|HSPC219|NAP1 tRNA methyltransferase O protein-coding 143.833-56 chr8 118415622 118416167 + 0.5 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -205107 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 116-66 chr4 70632583 70632975 + 0.5 NA intron (NM_031889, intron 5 of 8) intron (NM_031889, intron 5 of 8) 4035 NM_031889 10117 Hs.667018 NM_031889 ENSG00000132464 ENAM ADAI|AI1C|AIH2 enamelin protein-coding 134-29 chr12 62203982 62204285 + 0.5 NA Intergenic L1PA8A|LINE|L1 -11294 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 137-85 chr6 135724281 135724640 + 0.5 NA Intergenic Intergenic -127241 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 113.333-47 chr17 60040535 60040792 + 0.5 NA Intergenic AluJb|SINE|Alu 2442 NR_039890 100616210 NR_039890 ENSG00000264049 MIR4737 - microRNA 4737 ncRNA 148-21 chr11 133461478 133461969 + 0.5 NA intron (NM_001012393, intron 1 of 7) L1MB3|LINE|L1 70778 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 199.667-9 chr11 26462377 26462832 + 0.5 NA intron (NM_031418, intron 3 of 26) Helitron1Nb_Mam|RC|Helitron -11298 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 114-12 chr10 30506082 30506546 + 0.5 NA Intergenic AluJb|SINE|Alu 71668 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 214.5-26 chr4 34346326 34346958 + 0.5 NA Intergenic Intergenic -76895 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 163-39 chr3 72818257 72818640 + 0.5 NA intron (NM_018130, intron 6 of 10) intron (NM_018130, intron 6 of 10) 29997 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 137.5-95 chr8 82916933 82917361 + 0.5 NA intron (NR_134295, intron 2 of 3) intron (NR_134295, intron 2 of 3) 5043 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 130.167-4 chr1 216641158 216641653 + 0.5 NA intron (NM_001243505, intron 3 of 6) intron (NM_001243505, intron 3 of 6) 82024 NM_001243518 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 145-56 chr3 41661546 41662009 + 0.5 NA intron (NR_136342, intron 28 of 34) intron (NR_136342, intron 28 of 34) 300326 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 178.667-51 chr5 15667084 15667634 + 0.5 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -52357 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 147.5-69 chr4 85384895 85385542 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -89932 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 116.167-17 chr10 93181909 93182183 + 0.5 NA Intergenic MIRb|SINE|MIR 108153 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 134.833-46 chr4 98472325 98472750 + 0.5 NA exon (NM_005723, exon 8 of 8) exon (NM_005723, exon 8 of 8) 186074 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 192.167-44 chr8 106558110 106558570 + 0.5 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) -99468 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 119.833-48 chr2 226510929 226511447 + 0.5 NA Intergenic LTR16A|LTR|ERVL 147605 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 157.167-5 chr1 110981763 110982337 + 0.5 NA Intergenic Intergenic -18106 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 138.833-56 chr3 141041605 141041883 + 0.5 NA Intergenic L1MEc|LINE|L1 -9603 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 167.833-33 chr21 33569979 33570421 + 0.5 NA intron (NM_001291412, intron 7 of 10) intron (NM_001291412, intron 7 of 10) 18484 NM_017613 29980 Hs.436341 NM_017613 ENSG00000159147 DONSON B17|C21orf60|MIMIS|MISSLA downstream neighbor of SON protein-coding 113.333-114 chr9 97672935 97673186 + 0.5 NA 3' UTR (NM_001351506, exon 23 of 23) 3' UTR (NM_001351506, exon 23 of 23) 24349 NR_149094 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 197-16 chr14_GL000225v1_random 127327 127885 + 0.5 NA NA BSR/Beta|Satellite|Satellite NA NA 156-91 chr8 126833997 126834418 + 0.5 NA Intergenic Intergenic -178947 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 155.333-63 chr3 55659037 55659473 + 0.5 NA non-coding (NR_024615, exon 1 of 1) non-coding (NR_024615, exon 1 of 1) 214 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 169.667-26 chr15 67091401 67091942 + 0.5 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) 26069 NM_005902 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 113.833-33 chr19 36868906 36869144 + 0.5 NA intron (NM_001242476, intron 3 of 3) L1M4|LINE|L1 17374 NM_001242475 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 177.5-31 chr18 3926669 3927076 + 0.5 NA intron (NM_001242761, intron 3 of 11) L1MC4|LINE|L1 -35481 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 169-29 chr2 220560262 220561003 + 0.5 NA Intergenic LTR32|LTR|ERVL -654067 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 150.833-24 chr2 185601141 185601724 + 0.5 NA Intergenic L1MA4|LINE|L1 137287 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 182-13 chr14 52145633 52146207 + 0.5 NA Intergenic L1PA11|LINE|L1 -76861 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 129.167-63 chr5 109726129 109726478 + 0.5 NA intron (NM_002372, intron 3 of 21) intron (NM_002372, intron 3 of 21) 36937 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 160.167-61 chr8 6570392 6570897 + 0.5 NA intron (NM_024596, intron 12 of 13) intron (NM_024596, intron 12 of 13) -7399 NM_001118888 285 Hs.583870 NM_001147 ENSG00000091879 ANGPT2 AGPT2|ANG2 angiopoietin 2 protein-coding 210.5-32 chr3 152526534 152527058 + 0.5 NA Intergenic Intergenic -185806 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 115.167-103 chr8 73118701 73118997 + 0.5 NA Intergenic Intergenic -25677 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 142.833-24 chr16 48749560 48750033 + 0.5 NA Intergenic L1MA5A|LINE|L1 -139616 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 201.833-10 chr17 66787241 66787754 + 0.5 NA TTS (NR_030364) TTS (NR_030364) 425 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 201.833 chr10 7128376 7129010 + 0.5 NA Intergenic L1PBa|LINE|L1 58091 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 158.333-24 chr13 93128067 93128452 + 0.5 NA Intergenic Intergenic 82918 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 169.333-63 chr6 138867318 138867937 + 0.5 NA intron (NM_001077706, intron 12 of 21) AluSx1|SINE|Alu 71516 NM_001077706 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 162.833-7 chr11 46456327 46456909 + 0.5 NA intron (NM_001267782, intron 13 of 19) intron (NM_001267782, intron 13 of 19) -4729 NR_036117 100422827 NR_036117 ENSG00000265014 MIR3160-1 mir-3160-1 microRNA 3160-1 ncRNA 134.167-71 chr5 125705303 125705673 + 0.5 NA Intergenic L1M4|LINE|L1 212227 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 167.167-30 chr17 60852895 60853408 + 0.5 NA intron (NM_001330413, intron 7 of 25) L1MC1|LINE|L1 175300 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 157-10 chr10 20056752 20057277 + 0.5 NA intron (NM_032812, intron 3 of 13) intron (NM_032812, intron 3 of 13) 240582 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 136.167-72 chr7 107213441 107213792 + 0.5 NA intron (NM_181733, intron 18 of 20) L1MA7|LINE|L1 44613 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 177.167-30 chr3 139924566 139925007 + 0.5 NA Intergenic L1MEd|LINE|L1 -10399 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 173.5-9 chr10 9226500 9226947 + 0.5 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -48890 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 119.5-38 chr16 51817226 51817500 + 0.5 NA Intergenic L1PA15|LINE|L1 54844 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 150.5-45 chr21 18745802 18746289 + 0.5 NA intron (NR_109925, intron 1 of 3) (TA)n|Simple_repeat|Simple_repeat 13767 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 200-60 chr6 74615064 74615489 + 0.5 NA intron (NR_110856, intron 2 of 3) L2a|LINE|L2 513506 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 122.333-84 chr4 77450370 77450875 + 0.5 NA Intergenic Intergenic -61131 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 125.667-74 chr22 26567920 26568564 + 0.5 NA intron (NM_001362923, intron 1 of 7) L1ME3A|LINE|L1 -2901 NM_001008566 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 141.667-103 chr7 53929718 53930258 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -118057 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 183.167-44 chr5 45830556 45830991 + 0.5 NA Intergenic Intergenic -134393 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 126.5-59 chr3 68181707 68182220 + 0.5 NA intron (NM_001252216, intron 2 of 4) AluJb|SINE|Alu 177716 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 120-23 chr12 66331997 66332473 + 0.5 NA intron (NM_001370285, intron 12 of 12) intron (NM_001370285, intron 12 of 12) 29690 NR_135080 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 174.667-73 chr8 135900589 135900990 + 0.5 NA Intergenic Intergenic 443333 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 147.667-70 chr8 105000283 105000783 + 0.5 NA Intergenic L2|LINE|L2 -317905 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 183.667-18 chr10 108242164 108242596 + 0.5 NA Intergenic Intergenic -173087 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 122.5-99 chr8 83017873 83018392 + 0.5 NA Intergenic (TTTTTC)n|Simple_repeat|Simple_repeat 106028 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 133.667-71 chr5 13819060 13819548 + 0.5 NA intron (NM_001369, intron 41 of 78) intron (NM_001369, intron 41 of 78) 125176 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 162.833-2 chr1 95709399 95709915 + 0.5 NA Intergenic L2|LINE|L2 199541 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 117.167-79 chr5 94902616 94903017 + 0.5 NA intron (NM_001297777, intron 8 of 19) intron (NM_001297777, intron 8 of 19) 179050 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 127.833-48 chr20 50200777 50201193 + 0.5 NA Intergenic Intergenic -8916 NR_125739 101927559 Hs.442486 NR_125739 ENSG00000277449 CEBPB-AS1 - CEBPB antisense RNA 1 ncRNA 214.333-23 chr18 68947147 68947776 + 0.5 NA intron (NM_001093729, intron 8 of 9) MIR3|SINE|MIR 149381 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 128.167-40 chr2 75040842 75041296 + 0.5 NA Intergenic Intergenic -49743 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 141.5-85 chr8 126957597 126957944 + 0.5 NA Intergenic AluSx4|SINE|Alu -55384 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 120-20 chr11 116243134 116243518 + 0.5 NA Intergenic Charlie9|DNA|hAT-Charlie -396096 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 124-48 chr2 25766299 25766574 + 0.5 NA intron (NM_001369346, intron 6 of 10) HAL1|LINE|L1 28255 NM_001369347 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 168.167-15 chr14 38736251 38736728 + 0.5 NA Intergenic Intergenic -146107 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 140.833-32 chr2 122445899 122446215 + 0.5 NA Intergenic L1MA8|LINE|L1 627424 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 146.667-69 chr5 87653792 87654354 + 0.5 NA Intergenic Intergenic -7969 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 156.833-28 chr20 18725822 18726192 + 0.5 NA intron (NM_080820, intron 4 of 5) intron (NM_080820, intron 4 of 5) -27299 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 121.5-70 chr3 182978688 182979004 + 0.5 NA intron (NM_001308101, intron 1 of 6) intron (NM_001308101, intron 1 of 6) 1692 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 148.333-48 chr2 161668780 161669159 + 0.5 NA intron (NM_001354451, intron 1 of 25) intron (NM_001354451, intron 1 of 25) 44553 NM_001354445 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 151-86 chrUn_KI270587v1 1112 1516 + 0.5 NA NA ALR/Alpha|Satellite|centr NA NA 115-74 chr6 69994730 69995091 + 0.5 NA intron (NM_001858, intron 11 of 50) intron (NM_001858, intron 11 of 50) 128354 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 116.5-96 chr9 31536070 31536384 + 0.5 NA Intergenic Intergenic -154737 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 180.833-36 chr5 61099946 61100636 + 0.5 NA intron (NM_174889, intron 3 of 3) intron (NM_174889, intron 3 of 3) -62025 NR_109908 101928630 Hs.575209 NR_109908 SMIM15-AS1 CTC-436P18.1 SMIM15 antisense RNA 1 ncRNA 126.333-46 chr17 57632089 57632572 + 0.5 NA 3' UTR (NM_170721, exon 10 of 10) 3' UTR (NM_170721, exon 10 of 10) -23918 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 123.167-94 chr8 49300725 49300989 + 0.5 NA Intergenic Intergenic 211323 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 123.167-32 chr15 91656898 91657303 + 0.5 NA Intergenic Intergenic 193761 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 116.5-45 chr22 26919519 26919909 + 0.5 NA intron (NR_110540, intron 2 of 2) MLT1D|LTR|ERVL-MaLR 16422 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 270.5-9 chr22 38317842 38318755 + 0.5 NA promoter-TSS (NM_152221) promoter-TSS (NM_152221) -214 NM_001894 1454 Hs.474833 NM_001894 ENSG00000213923 CSNK1E CKIe|CKIepsilon|HCKIE casein kinase 1 epsilon protein-coding 140-31 chr16 85245290 85245878 + 0.5 NA Intergenic Intergenic -37374 NR_038859 197196 Hs.679002 NM_153238 ENSG00000179219 LINC00311 NCRNA00311|TMEM148 long intergenic non-protein coding RNA 311 ncRNA 145-19 chr11 72996041 72996454 + 0.5 NA intron (NM_014824, intron 5 of 19) MIRc|SINE|MIR 146071 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 139.667-56 chr2 149332087 149332481 + 0.5 NA intron (NM_194317, intron 1 of 4) intron (NM_194317, intron 1 of 4) 1697 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 128.167-44 chr21 20655224 20655714 + 0.5 NA Intergenic Intergenic 147639 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 173-9 chr10 52342506 52343040 + 0.5 NA Intergenic AluSq|SINE|Alu 28492 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 134.5-34 chr17 11542834 11543279 + 0.5 NA intron (NM_001173462, intron 3 of 4) Charlie15a|DNA|hAT-Charlie -55414 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 152.667-55 chr3 69328181 69328702 + 0.5 NA intron (NM_015123, intron 1 of 22) MER41B|LTR|ERV1 57647 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 122.333-104 chr8 17459740 17460160 + 0.5 NA Intergenic L1MD2|LINE|L1 -37138 NM_001370338 6542 Hs.448520 NM_003046 ENSG00000003989 SLC7A2 ATRC2|CAT2|HCAT2 solute carrier family 7 member 2 protein-coding 164.833-14 chr12 54750400 54750794 + 0.5 NA Intergenic Intergenic -102232 NM_053283 117159 Hs.350570 NM_053283 ENSG00000161634 DCD AIDD|DCD-1|DSEP|HCAP|PIF dermcidin protein-coding 122.333-31 chr14 39855272 39855573 + 0.5 NA Intergenic Intergenic -422922 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 161.833-29 chr3 27012444 27013084 + 0.5 NA Intergenic Intergenic 203759 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 187.5-20 chr18 13731109 13731681 + 0.5 NA intron (NM_003799, intron 2 of 11) AluSq2|SINE|Alu 4722 NM_001308263 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 155-82 chrX 53027391 53027936 + 0.5 NA Intergenic MER21-int|LTR|ERVL -21661 NM_018969 54328 Hs.193011 NM_018969 ENSG00000184194 GPR173 SREB3 G protein-coupled receptor 173 protein-coding 173.167-5 chr10 56260458 56260931 + 0.5 NA Intergenic Intergenic 100565 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 210.167-23 chr6 124280551 124281359 + 0.5 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -2050 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 115.333-68 chr3 39050701 39051103 + 0.5 NA intron (NM_001349253, intron 1 of 29) MER33|DNA|hAT-Charlie 1042 NM_001349253 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 157-16 chr11 65057020 65057517 + 0.5 NA intron (NM_005468, intron 4 of 17) MIRc|SINE|MIR 1285 NM_005468 10004 Hs.13967 NM_005468 ENSG00000168060 NAALADL1 I100|NAALADASEL N-acetylated alpha-linked acidic dipeptidase like 1 protein-coding 182-35 chr4 35954925 35955672 + 0.5 NA Intergenic L1PA15|LINE|L1 288641 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 132-93 chr8 58210119 58210603 + 0.5 NA Intergenic Intergenic 61740 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 137.167-63 chr7 92454508 92454976 + 0.5 NA intron (NM_021167, intron 4 of 4) intron (NM_021167, intron 4 of 4) 7260 NM_021167 57798 Hs.21145 NM_021167 ENSG00000157259 GATAD1 CMD2B|ODAG|RG083M05.2 GATA zinc finger domain containing 1 protein-coding 207-23 chr2 18456563 18457201 + 0.5 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 103771 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 133.833-78 chr8 131103535 131103939 + 0.5 NA Intergenic Intergenic -62828 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 119.5-91 chr6 99369998 99370283 + 0.5 NA intron (NM_017421, intron 6 of 6) MIR|SINE|MIR -20084 NM_001346530 84553 Hs.573245 NM_032511 ENSG00000146267 FAXC C6orf168|dJ273F20 failed axon connections homolog, metaxin like GST domain containing protein-coding 207-37 chr4 49710495 49711028 + 0.5 NA Intergenic SAR|Satellite|Satellite 724119 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 113.833-13 chr12 1880291 1880610 + 0.5 NA intron (NM_172364, intron 13 of 37).2 intron (NM_172364, intron 13 of 37).2 38202 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 114.333-40 chr14 67815237 67815560 + 0.5 NA intron (NM_015346, intron 2 of 41) L1MD2|LINE|L1 1192 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 145.167-29 chr18 74472545 74473082 + 0.5 NA Intergenic L2a|LINE|L2 -15545 NM_001044369 125704 Hs.371690 NM_001044369 ENSG00000187773 DIPK1C C18orf51|FAM69C divergent protein kinase domain 1C protein-coding 187.333-66 chr5 26823329 26823730 + 0.5 NA Intergenic Intergenic 215057 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 118.333-59 chr2 179642914 179643322 + 0.5 NA intron (NR_148056, intron 3 of 9) Charlie1a|DNA|hAT-Charlie 17076 NM_001352812 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 137.167-38 chr20 16988408 16988964 + 0.5 NA Intergenic AluSx|SINE|Alu -237421 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 196.667-5 chr10 20927593 20928234 + 0.5 NA intron (NM_001173484, intron 4 of 6) intron (NM_001173484, intron 4 of 6) -30311 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 145.833-69 chr5 165861677 165862143 + 0.5 NA Intergenic Intergenic 1064460 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 182-37 chr4 91270779 91271241 + 0.5 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 1006292 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 133.333-67 chr21 30403491 30403978 + 0.5 NA Intergenic Intergenic 7703 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 127.167-22 chr11 82051221 82051508 + 0.5 NA intron (NR_120571, intron 5 of 7) L1MA1|LINE|L1 -160528 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 158.667-79 chr6 136404532 136404941 + 0.5 NA intron (NM_001198611, intron 3 of 16) intron (NM_001198611, intron 3 of 16) 62139 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 169.833-35 chr7 108350428 108350908 + 0.5 NA intron (NM_001371131, intron 2 of 33) LTR16C|LTR|ERVL -22142 NM_001371178 113.5-20 chr11 59537122 59537421 + 0.5 NA Intergenic Intergenic 22358 NM_001004711 390199 Hs.553757 NM_001004711 ENSG00000172742 OR4D9 OR11-253 olfactory receptor family 4 subfamily D member 9 protein-coding 150.333-32 chr12 78713444 78713868 + 0.5 NA Intergenic Intergenic -150326 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 185.833-12 chr14 68122230 68122767 + 0.5 NA intron (NM_133509, intron 7 of 10) L1ME4b|LINE|L1 298906 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 118.5-36 chr15 85632004 85632477 + 0.5 NA intron (NM_001270546, intron 1 of 28) LTR40a|LTR|ERVL 12290 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 118.833-52 chr3 52563375 52563833 + 0.5 NA intron (NM_001366074, intron 26 of 30) intron (NM_001366074, intron 26 of 30) 26999 NM_001124767 440957 Hs.660577 NM_001124767 ENSG00000168273 SMIM4 C3orf78 small integral membrane protein 4 protein-coding 131.667-81 chr3 109788963 109789277 + 0.5 NA Intergenic Intergenic 186292 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 157.167-44 chr4 42083100 42083866 + 0.5 NA intron (NM_006345, intron 17 of 17) intron (NM_006345, intron 17 of 17) 69172 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 146.5-15 chr10 100317415 100317915 + 0.5 NA intron (NM_016112, intron 2 of 15) Charlie1|DNA|hAT-Charlie 12563 NM_001253837 9033 Hs.159241 NM_016112 ENSG00000107593 PKD2L1 PCL|PKD2L|PKDL|TRPP3 polycystin 2 like 1, transient receptor potential cation channel protein-coding 118.5-67 chr3 84337004 84337297 + 0.5 NA Intergenic L1MA3|LINE|L1 532425 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 149.333-86 chr6 159783839 159784309 + 0.5 NA intron (NM_001008897, intron 5 of 10) intron (NM_001008897, intron 5 of 10) 1659 NR_002965 677812 Hs.363137 NR_002965 ENSG00000206910 SNORA29 ACA29 small nucleolar RNA, H/ACA box 29 snoRNA 164.333-6 chr1 228261719 228262245 + 0.5 NA intron (NM_001271223, intron 17 of 115) L1M5|LINE|L1 -48318 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 OBSCN-AS1 C1orf145 OBSCN antisense RNA 1 ncRNA 130.833-27 chr2 12591684 12592004 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR -125028 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 125.667-17 chr11 27329681 27330126 + 0.5 NA Intergenic L1PA16|LINE|L1 33312 NM_030771 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 145-44 chr2 59916022 59916745 + 0.5 NA Intergenic AluJb|SINE|Alu 466653 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 157.333-72 chr8 84034078 84034719 + 0.5 NA Intergenic Intergenic -148389 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 123.167-49 chr2 56548191 56548627 + 0.5 NA Intergenic Intergenic -362639 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 126.833-6 chr1 153145522 153145913 + 0.5 NA Intergenic L2c|LINE|L2 -4224 NR_003062 6702 Hs.2421 NR_003062 SPRR2C - small proline rich protein 2C (pseudogene) pseudo 161-5 chr1 217706833 217707459 + 0.5 NA intron (NM_138796, intron 5 of 10) AluSx4|SINE|Alu 75802 NM_138796 128153 Hs.171130 NM_138796 ENSG00000162814 SPATA17 IQCH|MSRG-11|MSRG11 spermatogenesis associated 17 protein-coding 124.667 chr1 62206417 62206942 + 0.5 NA exon (NM_001164835, exon 4 of 5) exon (NM_001164835, exon 4 of 5) 11830 NM_019079 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 202.833-30 chr8 110523335 110524004 + 0.5 NA Intergenic L1MC3|LINE|L1 503764 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 120.5-80 chr7 16441725 16442132 + 0.5 NA Intergenic L1MC1|LINE|L1 -20390 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 171.667-10 chr10 103904629 103905223 + 0.5 NA intron (NM_024928, intron 4 of 9) intron (NM_024928, intron 4 of 9) 13258 NM_024928 79991 Hs.62314 NM_024928 ENSG00000107960 STN1 AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2 STN1 subunit of CST complex protein-coding 141.333-95 chr8 98566529 98566900 + 0.5 NA intron (NM_006281, intron 8 of 10) intron (NM_006281, intron 8 of 10) 139756 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 154-79 chr8 86285208 86285655 + 0.5 NA Intergenic AluJb|SINE|Alu -55050 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 194.167-43 chr9 106367673 106368460 + 0.5 NA Intergenic L1M4|LINE|L1 -232862 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 114.833-67 chr7 130794506 130794869 + 0.5 NA Intergenic MER51B|LTR|ERV1 -60654 NM_138693 136259 Hs.125240 NM_138693 ENSG00000266265 KLF14 BTEB5 Kruppel like factor 14 protein-coding 122.5-55 chr20 53216306 53216906 + 0.5 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 31323 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 156.833-62 chr9 37245459 37245995 + 0.5 NA intron (NM_001289120, intron 2 of 8) L2c|LINE|L2 125129 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 157.667-62 chr6 44860004 44860581 + 0.5 NA intron (NM_181356, intron 12 of 12) intron (NM_181356, intron 12 of 12) -308411 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 113.667-127 chr8 104992444 104992771 + 0.5 NA Intergenic Intergenic -325831 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 117.333-36 chr17 34868755 34869044 + 0.5 NA Intergenic HAL1ME|LINE|L1 92561 NM_006584 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 223-38 chrX 86100925 86101530 + 0.5 NA Intergenic Intergenic -47224 NM_053281 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 133.667-49 chr2 63989935 63990439 + 0.5 NA intron (NM_001005739, intron 1 of 22) HERVK11-int|LTR|ERVK 29241 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 144-54 chr4 59552100 59552521 + 0.5 NA Intergenic Intergenic 538737 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 139.833-49 chr20 20901566 20902146 + 0.5 NA Intergenic L2a|LINE|L2 -189212 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 181.833-44 chr5 112813898 112814393 + 0.5 NA intron (NM_001354906, intron 9 of 16) intron (NM_001354906, intron 9 of 16) -47043 NM_001204196 6728 Hs.637001 NM_003135 ENSG00000153037 SRP19 - signal recognition particle 19 protein-coding 147.833-34 chr2 33135817 33136407 + 0.5 NA intron (NM_206943, intron 5 of 33) intron (NM_206943, intron 5 of 33) 1515 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 147.5-24 chr12 85157781 85158202 + 0.5 NA intron (NM_001079910, intron 23 of 26) intron (NM_001079910, intron 23 of 26) 121640 NM_001079910 84125 Hs.402200 NM_032165 ENSG00000133640 LRRIQ1 - leucine rich repeats and IQ motif containing 1 protein-coding 193.333-21 chr16 59194157 59194712 + 0.5 NA Intergenic Intergenic -460118 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 124.667-110 chr6 124170709 124171060 + 0.5 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -112121 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 117.667-34 chr12 73996645 73997041 + 0.5 NA Intergenic Intergenic 295788 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 117-83 chr4 140405878 140406319 + 0.5 NA intron (NM_001130675, intron 5 of 15) intron (NM_001130675, intron 5 of 15) 21550 NM_004362 1047 Hs.86368 NM_004362 ENSG00000153132 CLGN - calmegin protein-coding 123.167-43 chr19 43927152 43927476 + 0.5 NA intron (NM_003425, intron 3 of 9) intron (NM_003425, intron 3 of 9) 7968 NM_003425 7596 Hs.381285 NM_003425 ENSG00000124459 ZNF45 KOX5|ZNF13 zinc finger protein 45 protein-coding 135.167-58 chr20 44365180 44365744 + 0.5 NA intron (NM_175914, intron 1 of 9) AluJr|SINE|Alu 9661 NM_175914 3172 Hs.116462 NM_000457 ENSG00000101076 HNF4A FRTS4|HNF4|HNF4a7|HNF4a8|HNF4a9|HNF4alpha|MODY|MODY1|NR2A1|NR2A21|TCF|TCF14 hepatocyte nuclear factor 4 alpha protein-coding 129.333-37 chr15 90077756 90078109 + 0.5 NA intron (NR_146321, intron 1 of 1) AluSp|SINE|Alu 4275 NR_146321 109729181 Hs.655249 NR_146321 ENSG00000259291 ZNF710-AS1 - ZNF710 antisense RNA 1 ncRNA 148.333-79 chr5 11397303 11397764 + 0.5 NA intron (NM_001288715, intron 4 of 20) intron (NM_001288715, intron 4 of 20) 191384 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 180.5-12 chr11 23091029 23091696 + 0.5 NA Intergenic Intergenic -230888 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 151.833-21 chr16 83449382 83449823 + 0.5 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -58744 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 203.667-9 chr12 79879544 79880025 + 0.5 NA intron (NM_001244990, intron 2 of 24) L1ME3|LINE|L1 34127 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 116.167-36 chr2 121856630 121856898 + 0.5 NA Intergenic LTR75_1|LTR|ERV1 101113 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 125.167-28 chr15 41739748 41740076 + 0.5 NA intron (NM_001164273, intron 13 of 23) intron (NM_001164273, intron 13 of 23) -34572 NR_049761 23005 Hs.513661 NM_014994 ENSG00000137802 MAPKBP1 JNKBP-1|JNKBP1|NPHP20 mitogen-activated protein kinase binding protein 1 protein-coding 197.833-22 chr3 111871741 111872214 + 0.5 NA intron (NM_001134439, intron 1 of 17) intron (NM_001134439, intron 1 of 17) 12150 NM_001134439 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 122.167-33 chr19 31651297 31651701 + 0.5 NA Intergenic AluJo|SINE|Alu 59218 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 123.667 chr1 5735666 5736047 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 126885 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 140.667-68 chr5 77733350 77733866 + 0.5 NA intron (NM_004607, intron 1 of 3) Tigger1|DNA|TcMar-Tigger 42731 NM_001297738 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 172.5-29 chr2 86578391 86578802 + 0.5 NA intron (NM_001198954, intron 3 of 7) L1MB7|LINE|L1 -15153 NM_001193517 51652 Hs.591582 NM_016079 ENSG00000115561 CHMP3 CGI-149|NEDF|VPS24 charged multivesicular body protein 3 protein-coding 114.667-71 chr3 12277219 12277605 + 0.5 NA Intergenic AluSx3|SINE|Alu -10073 NM_001354666 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 117.333-73 chr3 106292285 106292549 + 0.5 NA Intergenic Intergenic -423016 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 151-24 chr14 88027242 88027778 + 0.5 NA intron (NR_046094, intron 2 of 3) L2c|LINE|L2 -1198 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 147.5-51 chr2 214107719 214108193 + 0.5 NA intron (NR_047660, intron 12 of 14) intron (NR_047660, intron 12 of 14) -303098 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 151.667-54 chr21 25271747 25272439 + 0.5 NA Intergenic Intergenic 159608 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 137.833-28 chr4 60950741 60951185 + 0.5 NA Intergenic Intergenic 28344 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 113.667-52 chr17 74761513 74761892 + 0.5 NA intron (NM_004252, intron 1 of 5) MIR3|SINE|MIR 13074 NM_004252 9368 Hs.724482 NM_004252 ENSG00000109062 SLC9A3R1 EBP50|NHERF|NHERF-1|NHERF1|NPHLOP2 SLC9A3 regulator 1 protein-coding 161.833-43 chrX 73449302 73449639 + 0.5 NA intron (NM_005193, intron 1 of 2) intron (NM_005193, intron 1 of 2) 2216 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 131.833-37 chr2 168564016 168564413 + 0.5 NA intron (NM_001256126, intron 3 of 10) intron (NM_001256126, intron 3 of 10) -18729 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 114.167-89 chr7 92032325 92032580 + 0.5 NA intron (NM_147185, intron 16 of 49) AluSp|SINE|Alu 91577 NM_005751 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 125.667-30 chr14 45851359 45851834 + 0.5 NA Intergenic Intergenic -135994 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 200-18 chr14 51032307 51032994 + 0.5 NA intron (NM_015163, intron 1 of 9) LTR16|LTR|ERVL 63054 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 137.334-2 chr11 64317619 64318258 + 0.5 NA promoter-TSS (NM_001358516) promoter-TSS (NM_001358516) 146 NM_001286082 51504 Hs.333579 NM_016404 ENSG00000173113 TRMT112 HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112 tRNA methyltransferase subunit 11-2 protein-coding 150.333-43 chr15 64654239 64654938 + 0.5 NA intron (NM_015042, intron 2 of 8) intron (NM_015042, intron 2 of 8) 48693 NM_001301302 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 133.167-56 chr6 113520169 113520628 + 0.5 NA Intergenic L1ME1|LINE|L1 -86951 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 129-4 chr1 118056213 118056560 + 0.5 NA intron (NM_206996, intron 18 of 48) intron (NM_206996, intron 18 of 48) 126647 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 132-63 chr4 122938501 122938996 + 0.5 NA intron (NM_001317799, intron 8 of 10) AluSx3|SINE|Alu 15670 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 139.5-76 chr8 106783138 106783762 + 0.5 NA Intergenic L2|LINE|L2 -13206 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 116.167-56 chr4 176547139 176547455 + 0.5 NA Intergenic Intergenic 227331 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 117-33 chr15 80811239 80811504 + 0.5 NA intron (NM_018689, intron 1 of 28) intron (NM_018689, intron 1 of 28) 30702 NR_030393 693132 NR_030393 ENSG00000208003 MIR549A MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a microRNA 549a ncRNA 127.167-34 chr14 83257999 83258337 + 0.5 NA Intergenic Intergenic 615536 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 165.667-71 chr8 66141929 66142407 + 0.5 NA intron (NM_184087, intron 4 of 4) intron (NM_184087, intron 4 of 4) 15039 NM_033058 84675 Hs.85524 NM_033058 ENSG00000147573 TRIM55 MURF-2|RNF29|muRF2 tripartite motif containing 55 protein-coding 122.167-68 chr8 32248771 32249113 + 0.5 NA intron (NM_013962, intron 1 of 4) MER92-int|LTR|ERV1 -191804 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 168.5-35 chr22 28141512 28142111 + 0.5 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -221199 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 120.333-66 chr21 21784322 21784685 + 0.5 NA intron (NR_109958, intron 2 of 4) intron (NR_109958, intron 2 of 4) 37518 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 139.833-18 chr12 37614373 37614860 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -702158 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 116.5-41 chr2 169139513 169139917 + 0.5 NA intron (NM_004525, intron 72 of 78) intron (NM_004525, intron 72 of 78) 58608 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 132.167-43 chr20 50090592 50091028 + 0.5 NA intron (NM_022442, intron 2 of 3) L1MA9|LINE|L1 22340 NM_001282577 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 124.167-2 chr1 42185745 42186041 + 0.5 NA intron (NM_001198850, intron 11 of 12) intron (NM_001198850, intron 11 of 12) -21148 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 225.333-30 chr8 81942500 81943373 + 0.5 NA Intergenic AluY|SINE|Alu -100650 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 121.5-101 chr8 36953278 36953714 + 0.5 NA Intergenic L1MEg|LINE|L1 169122 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 120.5-74 chr5 179151468 179151777 + 0.5 NA intron (NM_021599, intron 10 of 10) intron (NM_021599, intron 10 of 10) 91249 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 140.833-34 chr2 135950671 135951011 + 0.5 NA intron (NM_001293312, intron 3 of 14) intron (NM_001293312, intron 3 of 14) -34335 NR_110199 101928243 Hs.602178 NR_110199 ENSG00000231890 DARS-AS1 - DARS antisense RNA 1 ncRNA 128.5-30 chr17 32356053 32356386 + 0.5 NA intron (NM_001032293, intron 2 of 10) intron (NM_001032293, intron 2 of 10) 6081 NM_001032293 7756 Hs.500775 NM_003457 ENSG00000010244 ZNF207 BuGZ|hBuGZ zinc finger protein 207 protein-coding 202.5-25 chr8 88659699 88660271 + 0.5 NA Intergenic Intergenic -332502 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 165-49 chr5 113998926 113999402 + 0.5 NA Intergenic L2a|LINE|L2 -362906 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 174-29 chr2 54971087 54971580 + 0.5 NA TTS (NM_153828) TTS (NM_153828) 38939 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 128.333-98 chr5 74848603 74849137 + 0.5 NA intron (NM_015566, intron 1 of 12) intron (NM_015566, intron 1 of 12) -17023 NR_134288 441086 Hs.653007 NR_134288 LOC441086 - uncharacterized LOC441086 ncRNA 196.667-44 chr5 33052611 33053464 + 0.5 NA Intergenic L1M2a|LINE|L1 105594 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 120.167-74 chr7 22392567 22392919 + 0.5 NA Intergenic Intergenic -35589 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 120-93 chr5 108597474 108597767 + 0.5 NA Intergenic Intergenic 130641 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 138-67 chr22 36997657 36997976 + 0.5 NA intron (NM_178552, intron 4 of 5) L2|LINE|L2 10035 NM_178552 339669 Hs.124502 NM_178552 ENSG00000185264 TEX33 C22orf33|EAN57|cE81G9.2 testis expressed 33 protein-coding 157-61 chr4 123249000 123249389 + 0.5 NA intron (NM_001345856, intron 14 of 15) L2c|LINE|L2 -147601 NM_199327 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 118.833-6 chr10 72676432 72676802 + 0.5 NA Intergenic Intergenic -15514 NR_073062 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 136.5-15 chr10 82855537 82855906 + 0.5 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -622801 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 116.167-23 chr14 33222187 33222632 + 0.5 NA intron (NM_173159, intron 3 of 11) MER39|LTR|ERV1 283530 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 130.833-32 chr2 107527991 107528320 + 0.5 NA Intergenic L1PA16|LINE|L1 -1264 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 140-4 chr1 194241370 194241800 + 0.5 NA Intergenic L1MC5a|LINE|L1 936840 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 225.833-16 chr5 133137460 133138025 + 0.5 NA Intergenic AluY|SINE|Alu 85729 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 130.167-6 chr10 34841110 34841482 + 0.5 NA Intergenic L1ME3D|LINE|L1 25528 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 118.667-39 chr17 30893703 30894027 + 0.5 NA exon (NM_024857, exon 21 of 23) exon (NM_024857, exon 21 of 23) 12373 NM_024683 79736 Hs.317340 NM_024683 ENSG00000172171 TEFM C17orf42 transcription elongation factor, mitochondrial protein-coding 163.333-11 chr10 66583947 66584293 + 0.5 NA intron (NM_001127384, intron 10 of 17) L1PB3|LINE|L1 -341916 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 131.667-9 chr1 212282816 212283227 + 0.5 NA intron (NR_125984, intron 1 of 3) MER5A|DNA|hAT-Charlie 2000 NR_125984 101929541 Hs.632493 NR_125982 ENSG00000226251 LINC02608 - long intergenic non-protein coding RNA 2608 ncRNA 194.667-3 chr1 103171299 103171831 + 0.5 NA Intergenic Intergenic -63043 NR_134980 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 124.833-63 chr3 183280709 183281019 + 0.5 NA intron (NM_015078, intron 14 of 29) AluSx|SINE|Alu 27611 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 119.333-96 chr6 162684963 162685303 + 0.5 NA intron (NM_004562, intron 1 of 11) MIRb|SINE|MIR -41999 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 145.833-6 chr1 216299614 216299973 + 0.5 NA intron (NM_206933, intron 9 of 71) intron (NM_206933, intron 9 of 71) 123603 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 126.167-11 chr10 15518021 15518362 + 0.5 NA intron (NM_001291494, intron 28 of 28) intron (NM_001291494, intron 28 of 28) -146902 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 148.167-23 chr15 69295926 69296422 + 0.5 NA Intergenic Intergenic -2738 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 137.5-79 chr5 40568472 40568845 + 0.5 NA Intergenic L1ME3A|LINE|L1 -111257 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 182.833-4 chr10 6293901 6294457 + 0.5 NA Intergenic Intergenic -32365 NR_040079 399715 NR_040079 ENSG00000215244 LINC02649 - long intergenic non-protein coding RNA 2649 ncRNA 135.667-20 chr10 106680654 106681131 + 0.5 NA intron (NM_001206569, intron 10 of 25) intron (NM_001206569, intron 10 of 25) 483814 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 155.667-88 chrX 94300349 94300756 + 0.5 NA Intergenic L1PB1|LINE|L1 626346 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 226.333-8 chr14 56742082 56742682 + 0.5 NA Intergenic Intergenic 63285 NM_172337 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 144-23 chr17 40774536 40774949 + 0.5 NA Intergenic Intergenic -2583 NM_181539 353288 Hs.592133 NM_181539 ENSG00000186393 KRT26 CK26|K25|K25IRS2|K26|KRT25B keratin 26 protein-coding 153.167-34 chr3 115196735 115197196 + 0.5 NA Intergenic L1P1|LINE|L1 -49677 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 135.5-40 chr18 22233922 22234210 + 0.5 NA Intergenic MIRc|SINE|MIR 64629 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 172-5 chr10 105408815 105409365 + 0.5 NA Intergenic Intergenic 411243 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 125.5-64 chr5 115794200 115794566 + 0.5 NA Intergenic Intergenic 22274 NR_136621 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 114.833-18 chr14 60534291 60534553 + 0.5 NA Intergenic Intergenic 25276 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 174-61 chr9 35393356 35393798 + 0.5 NA intron (NM_006377, intron 25 of 38) AluSz|SINE|Alu -13178 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 198.667-21 chr16 60602497 60602977 + 0.5 NA Intergenic L1ME3A|LINE|L1 -242944 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 135.167-16 chr11 80067914 80068231 + 0.5 NA Intergenic Intergenic -627042 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 129-7 chr1 198192448 198192809 + 0.5 NA intron (NM_133494, intron 1 of 9) L1P3|LINE|L1 35630 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 153.167-15 chr12 15447341 15447924 + 0.5 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) -98979 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 123.167-18 chr11 85961178 85961673 + 0.5 NA intron (NM_001008660, intron 19 of 19) intron (NM_001008660, intron 19 of 19) 106324 NM_001286159 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 160.833-50 chr9 109940608 109941088 + 0.5 NA intron (NM_147150, intron 6 of 9) L2|LINE|L2 -107750 NM_001004065 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 161.333-52 chr4 24310028 24310594 + 0.5 NA intron (NM_001330752, intron 1 of 13) L1MEa|LINE|L1 162594 NR_148981 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 144-49 chr3 108718589 108719221 + 0.5 NA Intergenic Intergenic 38378 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 125.667-107 chr6 102517430 102517863 + 0.5 NA Intergenic Intergenic 1118661 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 114-9 chr1 192015541 192016075 + 0.5 NA Intergenic Intergenic -142654 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 114-102 chr8 128223796 128224135 + 0.5 NA Intergenic Intergenic 73849 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 130-72 chr4 14934446 14934855 + 0.5 NA intron (NR_038857, intron 7 of 7) (TA)n|Simple_repeat|Simple_repeat -46481 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 226.333-23 chr3 2518215 2518668 + 0.5 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 279612 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 176.5-8 chr10 53363891 53364734 + 0.5 NA Intergenic MIRb|SINE|MIR -592612 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 160.333-64 chr9 6421830 6422264 + 0.5 NA intron (NM_152896, intron 2 of 15) L1ME3E|LINE|L1 8848 NM_152896 115426 Hs.493401 NM_152896 ENSG00000147854 UHRF2 NIRF|RNF107|TDRD23|URF2 ubiquitin like with PHD and ring finger domains 2 protein-coding 116-94 chr8 62510222 62510771 + 0.5 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 261642 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 158.5-66 chr5 125727774 125728400 + 0.5 NA Intergenic L2a|LINE|L2 234826 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 121.167-21 chr13 28843789 28844265 + 0.5 NA intron (NM_001366651, intron 2 of 14) MER125|DNA|DNA 23688 NM_001366650 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 144.5-12 chr10 96684809 96685198 + 0.5 NA intron (NM_152309, intron 2 of 16) intron (NM_152309, intron 2 of 16) 35511 NM_152309 118788 Hs.310456 NM_152309 ENSG00000155629 PIK3AP1 BCAP phosphoinositide-3-kinase adaptor protein 1 protein-coding 144.5-85 chr8 71838408 71838849 + 0.5 NA Intergenic Intergenic -4495 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 148.167-14 chr11 87672986 87673380 + 0.5 NA Intergenic L1PA10|LINE|L1 46228 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 117.167-69 chr4 39535448 39535769 + 0.5 NA intron (NR_047679, intron 2 of 4) THE1B|LTR|ERVL-MaLR 7769 NR_047679 100885776 Hs.640769 NR_047679 ENSG00000249348 UGDH-AS1 - UGDH antisense RNA 1 ncRNA 141-67 chr4 91279501 91279993 + 0.5 NA intron (NM_001145065, intron 10 of 10) L1MA4A|LINE|L1 997555 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 121.167-14 chr1 239242629 239243143 + 0.5 NA Intergenic Intergenic -143682 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 132.833-33 chr2 98071752 98072068 + 0.5 NA Intergenic LTR37A|LTR|ERV1 -15257 NR_144296 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 130.333-25 chr12 54625176 54625571 + 0.5 NA Intergenic L1M7|LINE|L1 9522 NM_033277 90070 Hs.307096 NM_033277 ENSG00000135413 LACRT - lacritin protein-coding 205.833-8 chr12 34483414 34484147 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 461284 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 122-47 chr3 24180055 24180535 + 0.5 NA intron (NR_121667, intron 3 of 3) intron (NR_121667, intron 3 of 3) 28971 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 118.5-52 chr2 106083061 106083341 + 0.5 NA Intergenic Intergenic 17513 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 161.5-32 chr3 156664317 156664806 + 0.5 NA Intergenic L2b|LINE|L2 -10029 NM_015508 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 180.833-24 chr20 48973594 48974330 + 0.5 NA intron (NM_006420, intron 12 of 38) intron (NM_006420, intron 12 of 38) 52251 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 128.333-91 chr5 13583020 13583484 + 0.5 NA Intergenic MER131|DNA?|DNA? 361228 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 171.667-29 chr15 42959564 42960150 + 0.5 NA intron (NM_174916, intron 43 of 46) intron (NM_174916, intron 43 of 46) -39079 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 168.167-17 chr14 55204669 55205078 + 0.5 NA Intergenic Intergenic -13288 NM_001146015 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 131.667-26 chr12 20235550 20236033 + 0.5 NA Intergenic Intergenic -107890 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 195.667-10 chr13 72626199 72626717 + 0.5 NA Intergenic L1PB1|LINE|L1 101171 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 125.833-16 chr11 112720913 112721265 + 0.5 NA Intergenic Intergenic -165287 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 173.167-44 chr7 85371769 85372243 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -49116 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 181.5-61 chr8 78929507 78930080 + 0.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 92264 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 113.833-38 chr2 80282035 80282554 + 0.5 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 22458 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 157-41 chr2 170217317 170218010 + 0.5 NA intron (NM_001083615, intron 6 of 33) MER91A|DNA|hAT-Tip100 39516 NM_001083615 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 122.5-6 chr1 207225019 207225577 + 0.5 NA Intergenic L1ME3B|LINE|L1 -96380 NM_001114752 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 149-72 chr7 126513003 126513476 + 0.5 NA intron (NM_001371085, intron 9 of 10) intron (NM_001371085, intron 9 of 10) 544945 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 143.167-37 chr2 88186661 88187040 + 0.5 NA TTS (NM_018271) TTS (NM_018271) 13711 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 147-18 chr14 51666111 51666697 + 0.5 NA intron (NM_001267046, intron 1 of 13) intron (NM_001267046, intron 1 of 13) 14494 NM_001267046 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 129.333-90 chr7 70867767 70868036 + 0.5 NA Intergenic L1MA3|LINE|L1 -264243 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 164-39 chr22 48272376 48273068 + 0.5 NA Intergenic Intergenic -1642 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 133-91 chr7 67668517 67668887 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 332726 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 149-32 chr18 1742495 1742854 + 0.5 NA Intergenic AluSc5|SINE|Alu -383045 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 119-49 chr2 940692 941007 + 0.5 NA Intergenic Intergenic -10000 NM_018968 54221 Hs.595069 NM_018968 ENSG00000172554 SNTG2 G2SYN|SYN5 syntrophin gamma 2 protein-coding 121.167-6 chr1 92035091 92035400 + 0.5 NA intron (NM_173567, intron 2 of 6) intron (NM_173567, intron 2 of 6) 5260 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 140.5-27 chr16 19777681 19778263 + 0.5 NA intron (NM_001305122, intron 7 of 8) AluSz|SINE|Alu -59745 NM_001348528 400506 Hs.585209 NM_001012991 ENSG00000103550 KNOP1 101F10.1|C16orf88|FAM191A|TSG118 lysine rich nucleolar protein 1 protein-coding 113.667-124 chr8 73677691 73678174 + 0.5 NA intron (NM_001164382, intron 3 of 13) intron (NM_001164382, intron 3 of 13) 68908 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 149.167-61 chr8 21376847 21377173 + 0.5 NA Intergenic L1ME2|LINE|L1 78771 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 127.5-11 chr10 25504079 25504670 + 0.5 NA intron (NM_020752, intron 5 of 10) intron (NM_020752, intron 5 of 10) -147338 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 159.833-43 chr7 8461004 8461574 + 0.5 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 27680 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 156.333-13 chr10 120687298 120687670 + 0.5 NA Intergenic Intergenic 89535 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 229.833-21 chr6 162453614 162454280 + 0.5 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -273185 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 136.5-80 chr6 25924059 25924466 + 0.5 NA intron (NM_001286123, intron 2 of 11) intron (NM_001286123, intron 2 of 11) 1617 NM_001286125 10246 Hs.591802 NM_005835 ENSG00000112337 SLC17A2 NPT3 solute carrier family 17 member 2 protein-coding 146.333-36 chr17 53947043 53947445 + 0.5 NA Intergenic Intergenic 124317 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 129.333-64 chr3 193218656 193218986 + 0.5 NA Intergenic Intergenic -22401 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 126.833-29 chr13 64049916 64050330 + 0.5 NA intron (NR_145420, intron 1 of 5) LTR49|LTR|ERV1 25888 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 116.667-98 chr6 165744451 165744932 + 0.5 NA Intergenic MER46C|DNA|TcMar-Tigger -82411 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 167-55 chr7 7735671 7736198 + 0.5 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -17327 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 118.333-91 chr5 44400789 44401123 + 0.5 NA intron (NR_108034, intron 2 of 2) MIR3|SINE|MIR -11536 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 134.167-74 chr7 30710905 30711527 + 0.5 NA Intergenic AluSp|SINE|Alu -11113 NM_001202475 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 134.667-76 chr4 143391466 143391931 + 0.5 NA intron (NM_207123, intron 1 of 10) intron (NM_207123, intron 1 of 10) 48238 NR_036091 100423017 NR_036091 ENSG00000265623 MIR3139 - microRNA 3139 ncRNA 149.167-42 chr3 191282565 191282915 + 0.5 NA intron (NM_198152, intron 4 of 8) intron (NM_198152, intron 4 of 8) -46654 NM_178335 152137 Hs.478682 NM_174908 ENSG00000152492 CCDC50 C3orf6|DFNA44|YMER coiled-coil domain containing 50 protein-coding 139.5-71 chr8 26094701 26095042 + 0.5 NA Intergenic Intergenic -49458 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 130.5-8 chr10 63911688 63912017 + 0.5 NA Intergenic MIR|SINE|MIR -389962 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 149.333-41 chr15 55985570 55986171 + 0.5 NA intron (NM_001329212, intron 1 of 28) L1MC4|LINE|L1 7742 NM_001329212 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 114.5-96 chr8 127068685 127069019 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -11022 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 157.833-59 chr6 71103887 71104437 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -147102 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 126-73 chr5 27949036 27949372 + 0.5 NA Intergenic Intergenic 338461 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 113.333-38 chr14 64623343 64623699 + 0.5 NA Intergenic Intergenic 73560 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 231.333-9 chr11 24595069 24595606 + 0.5 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 98284 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 172.333-58 chr4 71824202 71824717 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -18939 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 160.5-43 chr5 29648254 29648919 + 0.5 NA Intergenic L1PA16|LINE|L1 -231974 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 119.333-80 chr5 20396697 20397166 + 0.5 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 91380 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 119-76 chr4 121553283 121553561 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 143558 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 122.5-48 chr2 61135806 61136182 + 0.5 NA intron (NM_001330435, intron 21 of 21) intron (NM_001330435, intron 21 of 21) 8981 NR_036496 339803 Hs.252433 NR_036496 ENSG00000212978 LOC339803 - uncharacterized LOC339803 ncRNA 137.333-45 chr2 9510516 9511067 + 0.5 NA intron (NM_003183, intron 10 of 18) AluJr|SINE|Alu 35736 NM_001320858 285148 Hs.667226 NM_001039613 ENSG00000134330 IAH1 - isoamyl acetate hydrolyzing esterase 1 (putative) protein-coding 128.667-15 chr10 36233366 36233716 + 0.5 NA Intergenic MADE1|DNA|TcMar-Mariner 455239 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 196.5-13 chr13 108647061 108647671 + 0.5 NA intron (NM_001198950, intron 1 of 34) intron (NM_001198950, intron 1 of 34) 17755 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 147.667-37 chr20 57482797 57483238 + 0.5 NA Intergenic Intergenic 41850 NR_072975 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 115.334-6 chr7 82369652 82370252 + 0.5 NA intron (NM_000722, intron 1 of 38) L1M5|LINE|L1 73825 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 133.833-67 chr6 39486266 39486656 + 0.5 NA intron (NM_001289021, intron 12 of 21) MLT1H1|LTR|ERVL-MaLR -55071 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 138.167-52 chr3 78181849 78182125 + 0.5 NA Intergenic AluSx|SINE|Alu -133024 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 174.667-13 chr12 14444487 14444971 + 0.5 NA intron (NM_181352, intron 5 of 14) intron (NM_181352, intron 5 of 14) 59448 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 121.5-17 chr10 88670776 88671160 + 0.5 NA intron (NM_001198829, intron 6 of 10) intron (NM_001198829, intron 6 of 10) 6526 NM_001198830 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 130.833-66 chr7 43576130 43576423 + 0.5 NA Intergenic L1MEg|LINE|L1 -6832 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 113.333-41 chr15 74555032 74555374 + 0.5 NA intron (NM_001307939, intron 2 of 8) Tigger1|DNA|TcMar-Tigger 13983 NM_006465 10620 Hs.647642 NM_006465 ENSG00000179361 ARID3B BDP|DRIL2 AT-rich interaction domain 3B protein-coding 144.167-78 chr8 131192401 131192815 + 0.5 NA Intergenic L1MC3|LINE|L1 -151699 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 193.333-55 chr8 109640595 109641280 + 0.5 NA intron (NM_001099746, intron 1 of 5) intron (NM_001099746, intron 1 of 5) 2253 NM_001099756 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 119.167-30 chr17 57164084 57164433 + 0.5 NA Intergenic Intergenic 68769 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 132.833-56 chr7 5613580 5614138 + 0.5 NA Intergenic Intergenic 21043 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 220.833-20 chr5 105300157 105301054 + 0.5 NA Intergenic MER57B2|LTR|ERV1 201131 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 164.167-5 chr10 7004304 7004684 + 0.5 NA Intergenic L1PA8A|LINE|L1 182290 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 115.333-54 chr2 105155506 105155825 + 0.5 NA Intergenic Intergenic 11552 NR_136172 105373984 Hs.570237 NR_136172 ENSG00000226508 LINC01918 - long intergenic non-protein coding RNA 1918 ncRNA 114.167-3 chr1 181878519 181879045 + 0.5 NA Intergenic L1PA13|LINE|L1 182930 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 113.5-98 chrX 129617880 129618107 + 0.5 NA Intergenic Intergenic 36963 NM_017413 8862 Hs.303084 NM_017413 ENSG00000171388 APLN APEL|XNPEP2 apelin protein-coding 154.833-42 chr3 121434973 121435373 + 0.5 NA intron (NM_199420, intron 28 of 29) AluSz|SINE|Alu 110815 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 200.667-20 chr12 50214205 50214915 + 0.5 NA intron (NM_016357, intron 4 of 10) AluSg|SINE|Alu 8098 NM_001113547 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|LDLCQ8|SREBP3 LIM domain and actin binding 1 protein-coding 181-45 chr3 100783895 100784335 + 0.5 NA intron (NM_001349331, intron 32 of 42) intron (NM_001349331, intron 32 of 42) 74573 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 120.667-65 chr2 176806810 176807132 + 0.5 NA Intergenic Intergenic 169217 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 172.5 chr1 23046744 23047330 + 0.5 NA intron (NM_001009999, intron 3 of 20) intron (NM_001009999, intron 3 of 20) 2732 NR_036057 100422866 NR_036057 ENSG00000263793 MIR3115 mir-3115 microRNA 3115 ncRNA 138.167-31 chr17 56802963 56803298 + 0.5 NA intron (NM_001085430, intron 6 of 7) Charlie1|DNA|hAT-Charlie 30790 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 115.833-22 chr14 78031872 78032204 + 0.5 NA Intergenic Intergenic -138335 NM_001366426 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 114.833-7 chr1 191555129 191555498 + 0.5 NA Intergenic Intergenic -326815 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 165.667-75 chr8 127130426 127131026 + 0.5 NA Intergenic Intergenic -48505 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 157.5-30 chr2 13704212 13704881 + 0.5 NA Intergenic Intergenic 696412 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 126.167-55 chr3 126674475 126674807 + 0.5 NA Intergenic L1M5|LINE|L1 12560 NR_034158 255330 Hs.145435 NM_174935 ENSG00000198284 NUP210P1 C3orf46 nucleoporin 210 pseudogene 1 pseudo 167.667-60 chr3 97748986 97749684 + 0.5 NA 3' UTR (NM_001080448, exon 18 of 18) 3' UTR (NM_001080448, exon 18 of 18) -15186 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 151-4 chr1 95524004 95524537 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 14154 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 116.667-62 chr2 225302154 225302589 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -97339 NM_001371273 130-96 chr7 54982289 54982754 + 0.5 NA Intergenic Intergenic -36496 NM_001346897 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 113.833-8 chr10 16140967 16141321 + 0.5 NA Intergenic L1PREC2|LINE|L1 -280611 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 174.667-38 chr22 34842124 34842725 + 0.5 NA intron (NR_138042, intron 3 of 4) (TTA)n|Simple_repeat|Simple_repeat 155492 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 124.5-27 chr16 69436960 69437395 + 0.5 NA intron (NM_030579, intron 1 of 4) intron (NM_030579, intron 1 of 4) 12582 NM_030579 80777 Hs.461131 NM_030579 ENSG00000103018 CYB5B CYB5-M|CYPB5M|OMB5 cytochrome b5 type B protein-coding 113.167-22 chr16 70568243 70568658 + 0.5 NA exon (NM_012426, exon 22 of 26) exon (NM_012426, exon 22 of 26) -11445 NM_152456 146433 Hs.461214 NM_152456 ENSG00000157368 IL34 C16orf77|IL-34 interleukin 34 protein-coding 120.167-27 chr16 56488952 56489258 + 0.5 NA intron (NM_031885, intron 15 of 16) AluJb|SINE|Alu 30919 NM_031885 583 Hs.333738 NM_031885 ENSG00000125124 BBS2 BBS|RP74 Bardet-Biedl syndrome 2 protein-coding 113.5-5 chr1 170306552 170306992 + 0.5 NA Intergenic Intergenic -22564 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 120.833-40 chr22 30169482 30169918 + 0.5 NA intron (NM_001329457, intron 11 of 11) L2a|LINE|L2 -69494 NR_149070 110806283 NR_149070 ENSG00000232530 LIF-AS1 Lnc-LIF-AS LIF antisense RNA 1 ncRNA 148.667-80 chr8 114051606 114051980 + 0.5 NA Intergenic Intergenic -614854 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 142.167-36 chr2 30460743 30461161 + 0.5 NA intron (NM_182551, intron 2 of 6) MER21C|LTR|ERVL 13706 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 140.333-15 chr11 96281178 96281535 + 0.5 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -60082 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 137.167-9 chr10 98319066 98319425 + 0.5 NA Intergenic Charlie22a|DNA|hAT-Charlie -51051 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 147.167-11 chr10 62453079 62453495 + 0.5 NA intron (NM_199451, intron 3 of 7) L1PB4|LINE|L1 -67161 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 137.167-14 chr12 28855854 28856198 + 0.5 NA Intergenic Intergenic -293252 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 171.833-29 chr3 81153615 81154138 + 0.5 NA Intergenic L2|LINE|L2 160008 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 164.333-9 chr10 32966316 32966802 + 0.5 NA Intergenic L1MB2|LINE|L1 -8329 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 119.5-28 chr13 61652096 61652510 + 0.5 NA Intergenic L2|LINE|L2 -224357 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 160.5-11 chr14 42371996 42372368 + 0.5 NA Intergenic Intergenic 765326 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 156.167-49 chr5 116336296 116336654 + 0.5 NA Intergenic Intergenic 38095 NR_104675 101927190 Hs.639849 NR_104675 LOC101927190 - uncharacterized LOC101927190 ncRNA 182-33 chr3 94456825 94457256 + 0.5 NA Intergenic Intergenic 393979 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 116.833-45 chr4 138076121 138076521 + 0.5 NA intron (NR_037866, intron 7 of 10) intron (NR_037866, intron 7 of 10) -12693 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 154.167-14 chr12 9840516 9841123 + 0.5 NA intron (NM_001366534, intron 3 of 3) L1PA13|LINE|L1 13338 NR_159361 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 141-79 chr7 30566819 30567189 + 0.5 NA intron (NR_038889, intron 3 of 6) intron (NR_038889, intron 3 of 6) 10775 NR_038889 401320 Hs.561708 NR_038889 GARS-DT - GARS divergent transcript ncRNA 166.167-27 chr2 206817513 206818079 + 0.5 NA Intergenic L3b|LINE|CR1 -34488 NR_036077 100422993 NR_036077 ENSG00000283469 MIR3130-1 MIR3130-3|mir-3130-1 microRNA 3130-1 ncRNA 139.667-40 chr17 73890329 73890708 + 0.5 NA Intergenic Intergenic -61981 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 123.333-21 chr10 106505700 106506023 + 0.5 NA Intergenic Intergenic 365696 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 117-41 chr17 58381733 58382038 + 0.5 NA intron (NM_001305544, intron 2 of 9) intron (NM_001305544, intron 2 of 9) 20836 NM_001305545 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 127.5-45 chr3 100923690 100923988 + 0.5 NA intron (NM_001349332, intron 2 of 35) L1MC5a|LINE|L1 69651 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 150.5-67 chr5 118256612 118257148 + 0.5 NA intron (NR_104997, intron 2 of 2) L1MC5a|LINE|L1 -25694 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 178.833-36 chr8 128367353 128367945 + 0.5 NA Intergenic Intergenic 197030 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 127.667-53 chr21 32684494 32684799 + 0.5 NA intron (NM_203446, intron 9 of 32) intron (NM_203446, intron 9 of 32) 43275 NM_001160306 8867 Hs.473632 NM_003895 ENSG00000159082 SYNJ1 EIEE53|INPP5G|PARK20 synaptojanin 1 protein-coding 128.167-12 chr11 58780021 58780445 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -48259 NM_005838 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 180.667 chr1 8434496 8434866 + 0.5 NA non-coding (NR_125999, exon 4 of 4) non-coding (NR_125999, exon 4 of 4) 10036 NR_125999 102724552 Hs.568612 NR_125999 RERE-AS1 - RERE antisense RNA 1 ncRNA 115.667-69 chr21 24095652 24096003 + 0.5 NA Intergenic L2|LINE|L2 225550 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 173.5-11 chr10 104469051 104469546 + 0.5 NA Intergenic L1ME1|LINE|L1 10977 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 152.667-23 chr12 109248964 109249353 + 0.5 NA intron (NM_001093, intron 40 of 52) MER4C|LTR|ERV1 60126 NM_213596 121643 Hs.528316 NM_213596 ENSG00000139445 FOXN4 - forkhead box N4 protein-coding 131.667-95 chr5 15404870 15405504 + 0.5 NA Intergenic L1ME1|LINE|L1 -94993 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 131-42 chr3 194146847 194147170 + 0.5 NA Intergenic Intergenic 10860 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 144.167-27 chr16 75712143 75712624 + 0.5 NA Intergenic Intergenic -10922 NM_001351307 100033411 NM_001351307 ENSG00000282757 DUXB - double homeobox B protein-coding 162.5-32 chr2 100893131 100893791 + 0.5 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 73322 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 145-8 chr1 213351539 213351908 + 0.5 NA Intergenic Intergenic 300482 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 160-26 chr14 46562344 46562794 + 0.5 NA Intergenic L1ME1|LINE|L1 89212 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 125.667-14 chr10 66341492 66341870 + 0.5 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -584355 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 197.667-43 chr4 34507406 34507933 + 0.5 NA Intergenic Intergenic -237922 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 113.333-49 chr19 29176391 29176724 + 0.5 NA Intergenic L1MA2|LINE|L1 36594 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 120.167-57 chr3 83658796 83659342 + 0.5 NA Intergenic L1MC4|LINE|L1 1210506 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 117.5-79 chrX 53694363 53694649 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -7787 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 181.167-26 chr7 48834656 48835166 + 0.5 NA Intergenic Intergenic -89636 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 125.667-103 chr6 57177575 57177991 + 0.5 NA intron (NM_004282, intron 1 of 2) intron (NM_004282, intron 1 of 2) 5457 NM_004282 9532 Hs.745046 NM_004282 ENSG00000112208 BAG2 BAG-2|dJ417I1.2 BCL2 associated athanogene 2 protein-coding 125.667-65 chr2 190300488 190300999 + 0.5 NA intron (NM_198047, intron 2 of 12) L1PREC2|LINE|L1 19083 NM_014362 26275 Hs.656685 NM_014362 ENSG00000198130 HIBCH HIBYLCOAH 3-hydroxyisobutyryl-CoA hydrolase protein-coding 178.5 chr1 74836121 74836769 + 0.5 NA Intergenic MIR|SINE|MIR -103037 NM_001134759 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 136.833-56 chr5 76244698 76245012 + 0.5 NA intron (NM_014979, intron 4 of 12) MER3|DNA|hAT-Charlie -158430 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 156.833-17 chr12 111971266 111971624 + 0.5 NA intron (NM_001294314, intron 5 of 12) L1MEc|LINE|L1 41720 NM_001193531 89894 Hs.506815 NM_138341 ENSG00000198270 TMEM116 - transmembrane protein 116 protein-coding 115.167-12 chr1 185816867 185817343 + 0.5 NA intron (NM_031935, intron 1 of 106) L2b|LINE|L2 82714 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 124.333-68 chr3 167934244 167934765 + 0.5 NA Intergenic MLT2C2|LTR|ERVL 38556 NR_145443 646168 Hs.390443 NR_033843 ENSG00000244227 LRRC77P LINC01330 leucine rich repeat containing 77, pseudogene pseudo 124.167-38 chr18 75195598 75196047 + 0.5 NA 3' UTR (NM_175907, exon 2 of 2) 3' UTR (NM_175907, exon 2 of 2) 9691 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 114.833-76 chr9 104907530 104907910 + 0.5 NA intron (NM_005502, intron 1 of 49) intron (NM_005502, intron 1 of 49) 20435 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 145.667-26 chr13 94407940 94408298 + 0.5 NA TTS (NM_005708) TTS (NM_005708) 71563 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 133.5-69 chr7 7589912 7590403 + 0.5 NA intron (NR_163250, intron 8 of 11) intron (NR_163250, intron 8 of 11) 22131 NM_001370078 54468 Hs.520215 NM_019005 ENSG00000164654 MIOS MIO|Sea4|Yulink meiosis regulator for oocyte development protein-coding 158.833-35 chr22 44279620 44280163 + 0.5 NA intron (NM_001099294, intron 4 of 4) MER5A1|DNA|hAT-Charlie 33060 NM_001099294 85352 Hs.6829 NM_001099294 ENSG00000138944 SHISAL1 KIAA1644 shisa like 1 protein-coding 223.333 chr10 32247494 32248154 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR 99334 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 119.833-66 chr5 9379788 9380310 + 0.5 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -131284 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 203.833-6 chr14 43432971 43433651 + 0.5 NA Intergenic Tigger3|DNA|TcMar-Tigger 1073972 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 145.667-107 chrX 86946414 86946999 + 0.5 NA Intergenic Intergenic -571096 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 147.833-27 chr17 48308306 48308815 + 0.5 NA TTS (NR_131239) TTS (NR_131239) 14213 NR_131240 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 114.667-83 chr3 110530162 110530568 + 0.5 NA Intergenic Intergenic 539594 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 131.833-51 chr4 79507471 79507812 + 0.5 NA intron (NR_038826, intron 2 of 3) L1ME1|LINE|L1 15048 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 164.5-19 chr14 77178649 77179120 + 0.5 NA Intergenic Intergenic -2914 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 150.667-49 chr2 99347559 99347953 + 0.5 NA intron (NM_015904, intron 1 of 23) Charlie29a|DNA|hAT-Charlie 10367 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 191.833-5 chr12 31579072 31579645 + 0.5 NA intron (NM_001308339, intron 1 of 22) intron (NM_001308339, intron 1 of 22) -10565 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 127.5-33 chr2 28849817 28850158 + 0.5 NA 3' UTR (NM_017910, exon 7 of 7) 3' UTR (NM_017910, exon 7 of 7) 20322 NM_017910 55006 Hs.468026 NM_017910 ENSG00000171103 TRMT61B - tRNA methyltransferase 61B protein-coding 163.833-16 chr12 20145951 20146487 + 0.5 NA Intergenic L1PA10|LINE|L1 -18318 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 120.333-99 chr5 141990652 141990993 + 0.5 NA TTS (NM_004290) TTS (NM_004290) 21717 NM_183401 9604 Hs.483616 NM_004290 ENSG00000013561 RNF14 ARA54|HFB30|HRIHFB2038|TRIAD2 ring finger protein 14 protein-coding 184.5-49 chr7 72118363 72119051 + 0.5 NA intron (NM_001363460, intron 2 of 5) intron (NM_001363460, intron 2 of 5) 218684 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 204.5-2 chr1 24985608 24986167 + 0.5 NA Intergenic MIRb|SINE|MIR -20877 NM_001320672 864 Hs.170019 NM_004350 ENSG00000020633 RUNX3 AML2|CBFA3|PEBP2aC RUNX family transcription factor 3 protein-coding 128.667-43 chr15 46592648 46593066 + 0.5 NA Intergenic Intergenic -591232 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 121.167-92 chr9 69994205 69994831 + 0.5 NA Intergenic Intergenic -49063 NM_001347990 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 139-65 chr6 153046439 153046875 + 0.5 NA intron (NM_012419, intron 1 of 4) L1MEi|LINE|L1 -43842 NM_001301872 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 124.833-89 chr9 35234457 35234865 + 0.5 NA intron (NM_006377, intron 3 of 38) L2c|LINE|L2 72652 NM_001330653 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 159.167-67 chr8 85970213 85970759 + 0.5 NA Intergenic Intergenic 99182 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 116-8 chr10 44049973 44050232 + 0.5 NA Intergenic Intergenic 137700 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 164.833-17 chr14 50675444 50676024 + 0.5 NA Intergenic LTR32|LTR|ERVL -7428 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 125.333-16 chr10 27814239 27814612 + 0.5 NA intron (NM_018076, intron 19 of 19) L1M5|LINE|L1 -68606 NM_173576 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 204.333-7 chr10 73903630 73904086 + 0.5 NA Intergenic AluJr|SINE|Alu -7243 NM_001145031 5328 Hs.77274 NM_002658 ENSG00000122861 PLAU ATF|BDPLT5|QPD|UPA|URK|u-PA plasminogen activator, urokinase protein-coding 128-18 chr11 109595424 109595783 + 0.5 NA Intergenic Intergenic 173413 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 125.5-18 chr12 71068739 71069261 + 0.5 NA Intergenic Intergenic 88809 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 125.167-61 chr4 169817691 169818124 + 0.5 NA Intergenic Intergenic -59963 NM_017867 54969 Hs.406756 NM_017867 ENSG00000056050 HPF1 C4orf27 histone PARylation factor 1 protein-coding 120.333-69 chr22 25856047 25856526 + 0.5 NA intron (NM_001318245, intron 21 of 43) L1MB3|LINE|L1 114098 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 133.167-72 chr9 116265684 116266273 + 0.5 NA exon (NM_002581, exon 8 of 22) exon (NM_002581, exon 8 of 22) 112187 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 131.833-42 chr20 17220371 17220722 + 0.5 NA Intergenic L1M2|LINE|L1 -5561 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 114.333-116 chr8 37953394 37953758 + 0.5 NA Intergenic AluJr|SINE|Alu 13023 NM_000025 155 Hs.2549 NM_000025 ENSG00000188778 ADRB3 BETA3AR adrenoceptor beta 3 protein-coding 125.667-82 chr3 185383186 185383649 + 0.5 NA intron (NM_004721, intron 1 of 13) AluY|SINE|Alu 20281 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 144-2 chr10 13252819 13253257 + 0.5 NA Intergenic L1M5|LINE|L1 -18664 NM_145314 221044 Hs.112998 NM_145314 ENSG00000165623 UCMA C10orf49|GRP|GRP/UCMA upper zone of growth plate and cartilage matrix associated protein-coding 122.667-59 chr22 36130252 36130588 + 0.5 NA Intergenic Intergenic 30335 NM_014349 80833 Hs.474737 NM_014349 ENSG00000128284 APOL3 APOLIII|CG121|CG12_1|apoL-III apolipoprotein L3 protein-coding 169.333-55 chr4 67048053 67048502 + 0.5 NA Intergenic Intergenic 373723 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 122.833-75 chr6 82638999 82639375 + 0.5 NA Intergenic L1PB1|LINE|L1 274943 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 200.667-21 chr13 30988223 30988946 + 0.5 NA Intergenic Intergenic 55928 NR_148425 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 150.667-40 chr16 73768394 73768795 + 0.5 NA Intergenic Intergenic 381789 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 128.167-69 chr5 117278681 117279129 + 0.5 NA Intergenic L1MC4a|LINE|L1 -136607 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 144.833-2 chr1 26768723 26769329 + 0.5 NA intron (NM_139135, intron 11 of 19) A-rich|Low_complexity|Low_complexity -18937 NM_017837 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 179.5-5 chr12 95030528 95030975 + 0.5 NA 3' UTR (NM_001127362, exon 12 of 12) 3' UTR (NM_001127362, exon 12 of 12) -27038 NM_001258338 55967 Hs.506374 NM_018838 ENSG00000184752 NDUFA12 B17.2|DAP13|MC1DN23 NADH:ubiquinone oxidoreductase subunit A12 protein-coding 115.667-60 chr2 210724371 210724839 + 0.5 NA Intergenic LTR89|LTR|ERVL? 107034 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 132-83 chr6 66892679 66892968 + 0.5 NA Intergenic Intergenic 1104944 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 228.833-7 chr18 4985733 4986495 + 0.5 NA Intergenic Intergenic -95068 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 148.833-39 chr3 6231205 6231771 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR 573961 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 156.333-91 chr8 140041865 140042535 + 0.5 NA intron (NM_001160372, intron 17 of 22) L1MC4|LINE|L1 58335 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 156.333-54 chr20 45070983 45071431 + 0.5 NA intron (NM_001352385, intron 11 of 11) intron (NM_001352385, intron 11 of 11) 29920 NM_002251 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 175.167-43 chr6 146073731 146074218 + 0.5 NA intron (NM_001278065, intron 2 of 9) intron (NM_001278065, intron 2 of 9) 44776 NM_001278067 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 125.667-43 chr17 54748438 54748689 + 0.5 NA Intergenic L1MA3|LINE|L1 -152128 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 145.833-47 chr22 32810393 32810833 + 0.5 NA intron (NM_000362, intron 1 of 4) intron (NM_000362, intron 1 of 4) 9797 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 118-21 chr12 1141829 1142183 + 0.5 NA intron (NR_027948, intron 7 of 19) intron (NR_027948, intron 7 of 19) 114258 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 143.667-20 chr11 61369607 61369908 + 0.5 NA TTS (NM_001330281) TTS (NM_001330281) 7383 NR_028473 51524 Hs.406530 NM_016464 ENSG00000149483 TMEM138 HSPC196 transmembrane protein 138 protein-coding 126.333-109 chr8 124868776 124869180 + 0.5 NA Intergenic L1MB7|LINE|L1 -46920 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 125.833-96 chr8 134810523 134811007 + 0.5 NA Intergenic MIRc|SINE|MIR -5820 NR_029599 407033 NR_029599 ENSG00000199153 MIR30D MIRN30D|mir-30d microRNA 30d ncRNA 145.167-67 chr7 8724390 8724701 + 0.5 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 290936 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 141.5-7 chr10 31360589 31361086 + 0.5 NA TTS (NM_001368169) TTS (NM_001368169) 38918 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 131.167-11 chr10 95393927 95394372 + 0.5 NA intron (NM_001034955, intron 12 of 30) intron (NM_001034955, intron 12 of 30) 47031 NM_006434 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 134.667-81 chr5 24523220 24523540 + 0.5 NA intron (NM_001362460, intron 5 of 9) intron (NM_001362460, intron 5 of 9) 121598 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 123-65 chr3 36917560 36917931 + 0.5 NA intron (NM_001329998, intron 1 of 23) MER106B|DNA|hAT-Charlie 27309 NM_014831 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 139.667-24 chr14 46171741 46172229 + 0.5 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 107826 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 130.167-5 chr10 22058613 22059059 + 0.5 NA Intergenic Intergenic -55106 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 192.5-7 chr10 122358141 122358619 + 0.5 NA Intergenic L1MDa|LINE|L1 -16328 NM_001330178 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 121.5-48 chr18 8139408 8139856 + 0.5 NA intron (NM_002845, intron 13 of 30) L2a|LINE|L2 227402 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 186.833-43 chr7 10209847 10210342 + 0.5 NA Intergenic L2c|LINE|L2 -492582 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 192.5-22 chr18 78108258 78108728 + 0.5 NA Intergenic Intergenic -114766 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 121-97 chr9 22191538 22191861 + 0.5 NA Intergenic L1ME4a|LINE|L1 -182386 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 145.667-100 chr8 105241121 105241576 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -77090 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 115-26 chr14 46276846 46277235 + 0.5 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -194319 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 277-9 chr20 49492999 49493875 + 0.5 NA Intergenic AluSz|SINE|Alu -10769 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 151.333-46 chr2 104524135 104524625 + 0.5 NA Intergenic MIRc|SINE|MIR -13871 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 123.667-20 chr11 111675152 111675639 + 0.5 NA intron (NM_015191, intron 3 of 14) intron (NM_015191, intron 3 of 14) 72946 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 158.333-74 chr8 124647269 124647766 + 0.5 NA intron (NM_001282971, intron 3 of 14) L1MA9|LINE|L1 80956 NM_001363299 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 156-12 chr11 18536574 18536945 + 0.5 NA intron (NM_001040697, intron 9 of 11) intron (NM_001040697, intron 9 of 11) -9817 NM_006292 7251 Hs.523512 NM_006292 ENSG00000074319 TSG101 TSG10|VPS23 tumor susceptibility 101 protein-coding 147-83 chr8 77763900 77764415 + 0.5 NA Intergenic L1MA4A|LINE|L1 313460 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 135.5-35 chr15 76246174 76246511 + 0.5 NA intron (NM_000126, intron 9 of 11) MIR|SINE|MIR 13810 NR_028510 7302 Hs.684881 NR_002721 TYRO3P - TYRO3P protein tyrosine kinase pseudogene pseudo 124.167-24 chr14 51994459 51994916 + 0.5 NA intron (NM_016039, intron 3 of 7) intron (NM_016039, intron 3 of 7) 5141 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 211.5-31 chr7 6315596 6316179 + 0.5 NA Intergenic Intergenic 33080 NM_001037163 84792 Hs.696146 NM_001037163 ENSG00000286075 FAM220A ACPIN1|C7orf70|SIPAR family with sequence similarity 220 member A protein-coding 238.167-22 chr6 167786639 167787241 + 0.5 NA intron (NR_026773, intron 3 of 3) intron (NR_026773, intron 3 of 3) -8589 NR_149041 441179 Hs.192711 NR_149041 ENSG00000269155 LOC441179 - uncharacterized LOC441179 ncRNA 207.833-37 chr8 95246657 95247356 + 0.5 NA 3' UTR (NM_177965, exon 6 of 6) 3' UTR (NM_177965, exon 6 of 6) -21830 NR_038201 100616530 Hs.554328 NR_038201 ENSG00000253773 C8orf37-AS1 - C8orf37 antisense RNA 1 ncRNA 133.667-90 chr7 62727182 62727524 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 576703 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 165.833-18 chr14 58330225 58330600 + 0.5 NA intron (NM_002892, intron 11 of 23) intron (NM_002892, intron 11 of 23) 31857 NM_002892 5926 Hs.161000 NM_002892 ENSG00000032219 ARID4A RBBP-1|RBBP1|RBP-1|RBP1 AT-rich interaction domain 4A protein-coding 147.667-79 chr9 26092172 26092467 + 0.5 NA intron (NM_001004352, intron 1 of 6) HAL1M8|LINE|L1 25644 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 144.5-3 chr1 110564726 110565064 + 0.5 NA Intergenic Intergenic 41463 NM_004974 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 205-27 chr3 99176107 99176694 + 0.5 NA Intergenic MIRb|SINE|MIR -274705 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 150.5-27 chr14 79888683 79889078 + 0.5 NA Intergenic MIR|SINE|MIR -322539 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 139.833-8 chr10 108392016 108392510 + 0.5 NA Intergenic Intergenic -322970 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 128.833-6 chr1 100874683 100874980 + 0.5 NA intron (NM_001261442, intron 3 of 3) intron (NM_001261442, intron 3 of 3) 20011 NM_001033025 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 128.333-63 chr2 79764506 79764962 + 0.5 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 101849 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 176.667-68 chr6 156151939 156152448 + 0.5 NA Intergenic Intergenic 205396 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 153.833-50 chr5 44555420 44555754 + 0.5 NA Intergenic Intergenic -45305 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 141.667-110 chr8 125218392 125218901 + 0.5 NA intron (NM_001349486, intron 5 of 7) AluSx1|SINE|Alu 126786 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 127.333-62 chr20 45143003 45143591 + 0.5 NA Intergenic L1M1|LINE|L1 -18832 NM_080869 128488 Hs.352180 NM_080869 ENSG00000168703 WFDC12 C20orf122|SWAM2|WAP2|dJ211D12.4 WAP four-disulfide core domain 12 protein-coding 127-79 chr4 115278129 115278574 + 0.5 NA Intergenic L1MA10|LINE|L1 -164731 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 132.333-70 chr3 66471371 66471635 + 0.5 NA intron (NM_015541, intron 1 of 18) intron (NM_015541, intron 1 of 18) 28918 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 120.833-25 chr19 27869088 27869641 + 0.5 NA intron (NR_146734, intron 1 of 7) intron (NR_146734, intron 1 of 7) -75424 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 173-37 chr3 168911208 168911668 + 0.5 NA intron (NR_109989, intron 4 of 4) intron (NR_109989, intron 4 of 4) 9493 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 142.667-56 chr2 207860306 207860688 + 0.5 NA intron (NM_001080475, intron 7 of 7) intron (NM_001080475, intron 7 of 7) -90591 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 115.5-67 chr3 133238188 133238468 + 0.5 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) 18793 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 140.333-36 chr2 77730260 77730752 + 0.5 NA Intergenic Intergenic -185428 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 127.667-44 chr2 138597223 138597543 + 0.5 NA Intergenic Intergenic 95613 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 237 chr1 36446419 36447283 + 0.5 NA intron (NM_001330493, intron 1 of 10) MIR3|SINE|MIR 3600 NM_206837 127700 Hs.202207 NM_145047 ENSG00000116885 OSCP1 C1orf102|NOR1 organic solute carrier partner 1 protein-coding 137.333-103 chr8 130773865 130774158 + 0.5 NA Intergenic Intergenic 266898 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 152-2 chr1 27999526 27999931 + 0.5 NA intron (NR_104214, intron 12 of 16) intron (NR_104214, intron 12 of 16) 40266 NM_018053 55113 Hs.55024 NM_018053 ENSG00000158156 XKR8 XRG8|hXkr8 XK related 8 protein-coding 118.5-35 chr15 72944920 72945282 + 0.5 NA Intergenic L1M2|LINE|L1 -107362 NM_002499 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 255.333-14 chr3 72898787 72899622 + 0.5 NA intron (NM_001080393, intron 1 of 6) intron (NM_001080393, intron 1 of 6) 11158 NR_138564 727936 Hs.710275 NM_001080393 ENSG00000172986 GXYLT2 GLT8D4 glucoside xylosyltransferase 2 protein-coding 141.333-52 chr2 140877324 140877767 + 0.5 NA intron (NM_018557, intron 25 of 90) MER4A1|LTR|ERV1 -290860 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 120.5-49 chr2 7971787 7972293 + 0.5 NA intron (NR_015405, intron 1 of 2) intron (NR_015405, intron 1 of 2) 4774 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 122.167-29 chr17 71154321 71154762 + 0.5 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 47638 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 121.167-81 chr7 39907621 39908015 + 0.5 NA Intergenic L1MCa|LINE|L1 41601 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 125.333-107 chr6 134930486 134930995 + 0.5 NA intron (NM_001193480, intron 4 of 5) intron (NM_001193480, intron 4 of 5) 19361 NM_001193480 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 187.167-46 chr8 130922672 130923370 + 0.5 NA intron (NM_001115, intron 5 of 17) MIRb|SINE|MIR 117888 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 118.333-87 chr4 162088493 162088757 + 0.5 NA intron (NM_020116, intron 2 of 15) intron (NM_020116, intron 2 of 15) 65892 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 129.667-91 chr7 4411043 4411424 + 0.5 NA Intergenic MER3|DNA|hAT-Charlie -271062 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 135.333-85 chr8 110027462 110027978 + 0.5 NA Intergenic Intergenic -51949 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 142.333-19 chr11 22205352 22205752 + 0.5 NA intron (NM_001142649, intron 2 of 21) (AAAAT)n|Simple_repeat|Simple_repeat 12376 NM_213599 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 149.5-72 chrX 137544149 137544644 + 0.5 NA Intergenic Intergenic -21731 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 150.167-56 chr6 52623891 52624428 + 0.5 NA Intergenic AluSz|SINE|Alu -40242 NR_024405 730101 Hs.7921 NR_024403 ENSG00000216775 LOC730101 - uncharacterized LOC730101 ncRNA 113.667-81 chr3 96837346 96837777 + 0.5 NA intron (NM_001080448, intron 1 of 17) L2c|LINE|L2 22967 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 156.5-7 chr1 94029751 94030121 + 0.5 NA intron (NM_000350, intron 29 of 49) intron (NM_000350, intron 29 of 49) 91212 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 121-8 chr10 71203040 71203581 + 0.5 NA Intergenic Intergenic -9260 NM_170744 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 113.333-92 chr5 138238270 138238803 + 0.5 NA Intergenic AluSx|SINE|Alu -25213 NM_004661 8697 Hs.73625 NM_004661 ENSG00000094880 CDC23 ANAPC8|APC8|CUT23 cell division cycle 23 protein-coding 171.333-40 chr20 48574893 48575301 + 0.5 NA Intergenic MLT2B1|LTR|ERVL 215186 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 177.667-25 chr14 56511677 56512142 + 0.5 NA Intergenic Intergenic -2422 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 132.333-68 chr3 54204931 54205236 + 0.5 NA intron (NM_018398, intron 2 of 37) HAL1|LINE|L1 82531 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 136.333-101 chr8 136554101 136554442 + 0.5 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 23473 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 154.5-68 chr7 64493681 64494327 + 0.5 NA Intergenic L1ME3F|LINE|L1 60311 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 134.333-98 chr7 28280288 28280813 + 0.5 NA Intergenic Intergenic -18771 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 204.167-21 chr3 172046862 172047474 + 0.5 NA intron (NM_001135095, intron 1 of 25) intron (NM_001135095, intron 1 of 25) 6637 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 143.167-62 chr5 11399996 11400462 + 0.5 NA intron (NM_001288715, intron 4 of 20) intron (NM_001288715, intron 4 of 20) 188688 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 120.667-67 chr2 204551997 204552256 + 0.5 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 6651 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 143.5-30 chr17 76371135 76371468 + 0.5 NA Intergenic Intergenic -11903 NM_001355139 8877 Hs.68061 NM_021972 ENSG00000176170 SPHK1 SPHK sphingosine kinase 1 protein-coding 114.5-18 chr11 86882820 86883186 + 0.5 NA intron (NR_120592, intron 2 of 2) L1PA12|LINE|L1 -25049 NR_045004 8587 Hs.741959 NR_045004 ENSG00000255203 OR7E2P OR11-6|OR7E143P|OR7E51P|OR7E52P|OR7F2P|OST245|hg94 olfactory receptor family 7 subfamily E member 2 pseudogene pseudo 178.667-6 chr11 79203590 79204119 + 0.5 NA intron (NM_001098816, intron 3 of 33) L1MB8|LINE|L1 198255 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 151-32 chr18 32344640 32345110 + 0.5 NA intron (NM_001242409, intron 2 of 5) AluSx3|SINE|Alu 126007 NM_022751 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 138.667-42 chr19 29123337 29123866 + 0.5 NA Intergenic AluY|SINE|Alu 89550 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 113.333-39 chr14 69880303 69880692 + 0.5 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) 1081 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 178.5-63 chr6 41364096 41364648 + 0.5 NA Intergenic AluSz|SINE|Alu 28764 NM_001199509 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 174.5-14 chr15 34198664 34199264 + 0.5 NA intron (NM_024713, intron 1 of 9) MamRep605|LTR?|LTR? 11132 NM_024713 79768 Hs.633566 NM_024713 ENSG00000134152 KATNBL1 C15orf29 katanin regulatory subunit B1 like 1 protein-coding 209.667-31 chr5 43805048 43805505 + 0.5 NA Intergenic Intergenic -202046 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 141.833-15 chr15 61222022 61222345 + 0.5 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 7119 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 117.667-25 chr11 54844942 54845233 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 138255 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 147.333-53 chr3 35471749 35472118 + 0.5 NA Intergenic Intergenic -77910 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 120-25 chr12 119933058 119933403 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie -55910 NM_007174 11113 Hs.119594 NM_007174 ENSG00000122966 CIT CITK|CRIK|MCPH17|STK21 citron rho-interacting serine/threonine kinase protein-coding 144-15 chr12 62548073 62548615 + 0.5 NA intron (NM_001278469, intron 22 of 35) L2|LINE|L2 55090 NR_121682 283416 Hs.375881 NM_175895 ENSG00000221949 LINC01465 C12orf61 long intergenic non-protein coding RNA 1465 ncRNA 126-66 chr4 101604883 101605285 + 0.5 NA Intergenic Intergenic -185523 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 166-65 chr7 94425494 94426098 + 0.5 NA exon (NM_000089, exon 44 of 52) exon (NM_000089, exon 44 of 52) 31235 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 EDSARTH2|EDSCV|OI4 collagen type I alpha 2 chain protein-coding 176.333 chr1 13842555 13843034 + 0.5 NA Intergenic L1PA14|LINE|L1 93379 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 160.333-58 chr7 107718898 107719357 + 0.5 NA Intergenic Intergenic 24505 NR_144536 101927974 Hs.432792 NR_144536 ENSG00000241764 LOC101927974 - uncharacterized LOC101927974 ncRNA 131.333-27 chr13 112025856 112026230 + 0.5 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) -41106 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 113.833-88 chr8 100687221 100687733 + 0.5 NA Intergenic L1M5|LINE|L1 15547 NR_106992 102466854 NR_106992 ENSG00000284570 MIR7705 hsa-mir-7705 microRNA 7705 ncRNA 117.667-59 chr2 41105984 41106314 + 0.5 NA Intergenic L1M5|LINE|L1 -593714 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 137-93 chr8 80536023 80536391 + 0.5 NA Intergenic Intergenic 49981 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 159.667-45 chr19 57930960 57931574 + 0.5 NA intron (NM_001317028, intron 3 of 6) AluSq|SINE|Alu 4135 NM_001317030 147686 Hs.660728 NM_133460 ENSG00000196724 ZNF418 - zinc finger protein 418 protein-coding 114.167-67 chr3 104811794 104812311 + 0.5 NA Intergenic L1MA6|LINE|L1 -554661 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 133.333-44 chr17 64537387 64537776 + 0.5 NA intron (NM_138363, intron 19 of 19) intron (NM_138363, intron 19 of 19) 30604 NM_001316990 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 163.167-51 chrX 41262974 41263404 + 0.5 NA Intergenic MSTB1|LTR|ERVL-MaLR -12550 NR_135616 105373185 Hs.546119 NR_135616 ENSG00000223714 LINC02601 - long intergenic non-protein coding RNA 2601 ncRNA 128-67 chr4 77329325 77329744 + 0.5 NA Intergenic AluSz|SINE|Alu 172327 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 154.167-3 chr1 207226324 207226980 + 0.5 NA Intergenic L1ME3A|LINE|L1 -95026 NM_001114752 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 123.167-67 chr4 30423191 30423513 + 0.5 NA Intergenic MIRb|SINE|MIR -297017 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 127.167-61 chr3 135510176 135510546 + 0.5 NA Intergenic L1ME1|LINE|L1 -455367 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 191.667-13 chr12 22500804 22501427 + 0.5 NA intron (NM_001286176, intron 10 of 26) intron (NM_001286176, intron 10 of 26) 43082 NM_001286174 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 119.833-7 chr1 108885803 108886293 + 0.5 NA intron (NM_013296, intron 2 of 14) (TTTTA)n|Simple_repeat|Simple_repeat 9063 NM_013296 29899 Hs.584901 NM_013296 ENSG00000121957 GPSM2 CMCS|DFNB82|LGN|PINS G protein signaling modulator 2 protein-coding 200.167-45 chr8 131056855 131057460 + 0.5 NA Intergenic L2a|LINE|L2 -16248 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 149.167-15 chr12 120009826 120010432 + 0.5 NA intron (NR_147894, intron 3 of 8) Charlie15b|DNA|hAT-Charlie 20285 NM_207311 92558 Hs.369763 NM_207311 ENSG00000135127 BICDL1 BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1 BICD family like cargo adaptor 1 protein-coding 142.333-3 chr1 43210724 43211129 + 0.5 NA TTS (NM_001167965) TTS (NM_001167965) -38356 NM_001159936 10969 Hs.346868 NM_006824 ENSG00000117395 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 114.333-33 chr12 125681667 125682104 + 0.5 NA Intergenic L2a|LINE|L2 59433 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 116.833-2 chr1 166374706 166374962 + 0.5 NA Intergenic Intergenic 115205 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 163.333-71 chr7 15969044 15969445 + 0.5 NA Intergenic L2a|LINE|L2 -241242 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 199.333-8 chr13 106133328 106134196 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -242802 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 159-45 chr2 188867646 188868234 + 0.5 NA Intergenic L1PA8A|LINE|L1 -77817 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 156.167-42 chr3 46600229 46600820 + 0.5 NA Intergenic AluJb|SINE|Alu -12001 NM_001195442 100132146 Hs.679623 NM_001195442 ENSG00000283473 FAM240A - family with sequence similarity 240 member A protein-coding 118.5-7 chr1 96869397 96869707 + 0.5 NA Intergenic Intergenic 146914 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 114.667-87 chr3 150973315 150973801 + 0.5 NA promoter-TSS (NM_001195794) promoter-TSS (NM_001195794) -559 NM_001195794 7401 Hs.745448 NM_052995 ENSG00000163646 CLRN1 RP61|USH3|USH3A clarin 1 protein-coding 185.667-29 chr22 18031443 18031919 + 0.5 NA intron (NR_024417, intron 1 of 1) intron (NR_024417, intron 1 of 1) 2296 NR_024417 100192420 Hs.589947 NR_024417 ENSG00000235295 LINC01634 - long intergenic non-protein coding RNA 1634 ncRNA 128.667-10 chr1 208845487 208845928 + 0.5 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat 117019 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 153.5-70 chr7 69201940 69202489 + 0.5 NA Intergenic Intergenic 395410 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 140.167-55 chr5 46177791 46178255 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -481643 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 198.5-14 chr16 71352216 71352673 + 0.5 NA Intergenic Intergenic -6269 NM_007088 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 155.5-22 chr17 28077695 28078319 + 0.5 NA intron (NM_016231, intron 1 of 10) intron (NM_016231, intron 1 of 10) 35330 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 141.333-105 chrX 47532056 47532523 + 0.5 NA Intergenic AluJb|SINE|Alu -28811 NM_001256197 369 Hs.446641 NM_001654 ENSG00000078061 ARAF A-RAF|ARAF1|PKS2|RAFA1 A-Raf proto-oncogene, serine/threonine kinase protein-coding 132.5-26 chr14 47763127 47763549 + 0.5 NA Intergenic L1MEc|LINE|L1 -2234 NR_037503 100500919 NR_037503 ENSG00000263945 MIR548Y - microRNA 548y ncRNA 192.333-37 chr4 16532493 16533146 + 0.5 NA intron (NM_001304435, intron 5 of 7) intron (NM_001304435, intron 5 of 7) 306156 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 140.5-5 chr1 161368476 161368896 + 0.5 NA promoter-TSS (NM_001013625) promoter-TSS (NM_001013625) -803 NM_001013625 257177 Hs.534593 NM_001013625 ENSG00000188931 CFAP126 C1orf192|Flattop|Fltp cilia and flagella associated protein 126 protein-coding 114.333-5 chr1 101033314 101033670 + 0.5 NA intron (NR_109849, intron 1 of 4) intron (NR_109849, intron 1 of 4) 7646 NR_109849 102606465 Hs.593669 NR_109849 LOC102606465 - uncharacterized LOC102606465 ncRNA 148.167-47 chr20 42294798 42295186 + 0.5 NA intron (NM_133170, intron 12 of 31) L1MC4|LINE|L1 -390491 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 168-14 chr14 29562489 29563203 + 0.5 NA Intergenic L1ME1|LINE|L1 364250 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 183.5-50 chr5 78162242 78162758 + 0.5 NA intron (NM_003664, intron 13 of 26) intron (NM_003664, intron 13 of 26) 132198 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 134-13 chr10 12218555 12219059 + 0.5 NA intron (NM_006023, intron 6 of 12) intron (NM_006023, intron 6 of 12) 22619 NM_006023 8872 Hs.412842 NM_006023 ENSG00000151465 CDC123 C10orf7|D123 cell division cycle 123 protein-coding 195.333-29 chr20 25097698 25098472 + 0.5 NA Intergenic L1MC2|LINE|L1 -15706 NR_045951 30813 Hs.274264 NM_014588 ENSG00000100987 VSX1 CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX visual system homeobox 1 protein-coding 123.833-11 chr11 95855292 95855621 + 0.5 NA intron (NM_001243571, intron 10 of 17) AluJb|SINE|Alu 64958 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 144.167-68 chr7 72055141 72055651 + 0.5 NA intron (NM_001363460, intron 3 of 5) intron (NM_001363460, intron 3 of 5) 281995 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 173-25 chr18 45521064 45521555 + 0.5 NA intron (NM_001371319, intron 5 of 23) intron (NM_001371319, intron 5 of 23) -14273 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 121.833-3 chr1 115213624 115213867 + 0.5 NA Intergenic Intergenic -69289 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 171 chr1 38250436 38250953 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -35927 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 136.167-75 chr8 82930603 82930981 + 0.5 NA intron (NR_134295, intron 2 of 3) AluSx1|SINE|Alu 18688 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 186-20 chr19 36342909 36343369 + 0.5 NA intron (NM_001297619, intron 4 of 4) intron (NM_001297619, intron 4 of 4) -11421 NR_038278 100506930 Hs.595153 NR_038278 ENSG00000232677 LINC00665 - long intergenic non-protein coding RNA 665 ncRNA 120.667-70 chr20 35798519 35798982 + 0.5 NA intron (NM_016436, intron 1 of 17) AluSp|SINE|Alu 26735 NM_016436 51230 Hs.517044 NM_016436 ENSG00000025293 PHF20 C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP PHD finger protein 20 protein-coding 138.667-100 chr8 35155598 35156270 + 0.5 NA Intergenic L1MD3|LINE|L1 -79541 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 137.167-6 chr1 244230748 244231308 + 0.5 NA Intergenic Intergenic -121607 NM_001276348 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 121.333-85 chr5 143158270 143158692 + 0.5 NA intron (NM_001349547, intron 20 of 21) intron (NM_001349547, intron 20 of 21) -34019 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 114.5-93 chr8 88757514 88757892 + 0.5 NA Intergenic L1MA5A|LINE|L1 -430220 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 133.833-34 chr17 29495476 29495811 + 0.5 NA exon (NM_020791, exon 11 of 20) exon (NM_020791, exon 11 of 20) 71394 NM_198147 116236 Hs.106510 NM_198147 ENSG00000168792 ABHD15 - abhydrolase domain containing 15 protein-coding 141.833-28 chr4 76969893 76970189 + 0.5 NA intron (NM_018243, intron 1 of 9) intron (NM_018243, intron 1 of 9) 20289 NM_001306147 55752 Hs.128199 NM_018243 ENSG00000138758 SEPTIN11 SEPT11 septin 11 protein-coding 147.667-49 chr4 15933717 15934193 + 0.5 NA Intergenic Intergenic 4785 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 117.167-36 chr2 20365688 20366116 + 0.5 NA Intergenic L2a|LINE|L2 -13649 NM_001352925 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 126.333-65 chr20 994824 995261 + 0.5 NA intron (NM_001029871, intron 1 of 4) MIRc|SINE|MIR 7269 NM_001040007 343637 Hs.444980 NM_001029871 ENSG00000101282 RSPO4 C20orf182|CRISTIN4 R-spondin 4 protein-coding 159.167-12 chr11 15919313 15919673 + 0.5 NA Intergenic Intergenic 50128 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 137.167-23 chr17 13735669 13735983 + 0.5 NA Intergenic LTR33|LTR|ERVL -133897 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 138.167 chr1 96715639 96715992 + 0.5 NA Intergenic MER4B|LTR|ERV1 -5790 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 126-56 chr22 20849216 20849571 + 0.5 NA intron (NM_058004, intron 1 of 54) L1MB8|LINE|L1 9418 NM_058004 5297 Hs.529438 NM_002650 ENSG00000241973 PI4KA PI4K-ALPHA|PIK4CA|PMGYCHA|pi4K230 phosphatidylinositol 4-kinase alpha protein-coding 203.833-7 chr14 48780535 48781170 + 0.5 NA Intergenic MIRb|SINE|MIR 805528 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 171.833-42 chr6 71540282 71540741 + 0.5 NA Intergenic Intergenic 119484 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 127.5-59 chr6 49110522 49110820 + 0.5 NA Intergenic Intergenic 352582 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 132.167-41 chr20 36952493 36952807 + 0.5 NA promoter-TSS (NM_001363733) promoter-TSS (NM_001363733) -807 NM_015474 25939 Hs.580681 NM_015474 ENSG00000101347 SAMHD1 CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 protein-coding 135.667-27 chr12 14529934 14530427 + 0.5 NA intron (NM_024829, intron 6 of 10) MLT1F1|LTR|ERVL-MaLR -37552 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 115.333-24 chr13 50381253 50381710 + 0.5 NA intron (NR_109974, intron 2 of 6) MER57B2|LTR|ERV1 145968 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 240-4 chr10 119859225 119859833 + 0.5 NA intron (NM_024834, intron 2 of 15) intron (NM_024834, intron 2 of 15) 13354 NM_024834 79892 Hs.124246 NM_024834 ENSG00000197771 MCMBP C10orf119|MCM-BP minichromosome maintenance complex binding protein protein-coding 129.167-26 chr15 62343802 62344136 + 0.5 NA TTS (NR_106733) TTS (NR_106733) 940 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 146.167-71 chr7 95619003 95619603 + 0.5 NA Intergenic Intergenic -22787 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 241.5-25 chr8 78036440 78037331 + 0.5 NA Intergenic Intergenic -479455 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 126.667-56 chr3 52678991 52679522 + 0.5 NA intron (NM_001366074, intron 4 of 30) L2a|LINE|L2 6343 NM_001350074 55193 Hs.189920 NM_018165 ENSG00000163939 PBRM1 BAF180|PB1 polybromo 1 protein-coding 135.5-19 chr11 79508876 79509272 + 0.5 NA Intergenic Intergenic -68044 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 129.5-48 chr2 128992084 128992437 + 0.5 NA Intergenic L1MD1|LINE|L1 127660 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 126.167-68 chr5 28159554 28160116 + 0.5 NA Intergenic LTR33C|LTR|ERVL 127830 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 140-29 chr16 9607110 9607491 + 0.5 NA Intergenic Intergenic -151795 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 156.333-92 chr9 341068 341497 + 0.5 NA intron (NM_001193536, intron 13 of 46) intron (NM_001193536, intron 13 of 46) 68234 NM_001193536 81704 Hs.132599 NM_203447 ENSG00000107099 DOCK8 HEL-205|MRD2|ZIR8 dedicator of cytokinesis 8 protein-coding 133.5-7 chr1 201487213 201487543 + 0.5 NA intron (NM_001193570, intron 4 of 5) AluSg|SINE|Alu 9195 NM_001193572 1465 Hs.108080 NM_004078 ENSG00000159176 CSRP1 CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141|HEL-S-286 cysteine and glycine rich protein 1 protein-coding 158.667-2 chr1 81029166 81029589 + 0.5 NA Intergenic L2a|LINE|L2 -276815 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 151.333-96 chr9 37097920 37098311 + 0.5 NA Intergenic AluSg|SINE|Alu 18219 NR_036592 100506710 Hs.446271 NR_036592 ENSG00000281649 EBLN3P EBLN3 endogenous Bornavirus like nucleoprotein 3, pseudogene pseudo 160.833-26 chr2 209200447 209200785 + 0.5 NA Intergenic L2a|LINE|L2 -223431 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 118.667-103 chr6 141105723 141106127 + 0.5 NA Intergenic Intergenic 422111 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 207.833-36 chr8 27518382 27518868 + 0.5 NA intron (NM_001979, intron 9 of 18) intron (NM_001979, intron 9 of 18) 27482 NM_001256484 2053 Hs.212088 NM_001979 ENSG00000120915 EPHX2 ABHD20|CEH|SEH epoxide hydrolase 2 protein-coding 153.667-74 chr8 40863759 40864200 + 0.5 NA intron (NM_024645, intron 1 of 6) L2a|LINE|L2 33847 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 243.667-9 chr12 41193969 41194796 + 0.5 NA intron (NM_001164595, intron 3 of 9) AluJb|SINE|Alu 6062 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 190-60 chr8 126067750 126068221 + 0.5 NA Intergenic Intergenic -116788 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 137.5-81 chr5 105437662 105437994 + 0.5 NA Intergenic Intergenic 338354 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 164-77 chr8 124455953 124456614 + 0.5 NA Intergenic (TTGT)n|Simple_repeat|Simple_repeat 5463 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 137.167-70 chr8 118853471 118853870 + 0.5 NA Intergenic Intergenic 98215 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 174.5-5 chr10 54144730 54145266 + 0.5 NA intron (NM_001354411, intron 15 of 34) intron (NM_001354411, intron 15 of 34) -341232 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 132.167-42 chr20 43110587 43110898 + 0.5 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 79164 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 227.667-20 chr4 79750178 79750678 + 0.5 NA Intergenic L1MA8|LINE|L1 -77043 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 171.5-22 chr15 101321353 101321887 + 0.5 NA intron (NM_002570, intron 18 of 21) intron (NM_002570, intron 18 of 21) -12316 NR_045387 100507472 Hs.498494 NR_045387 LOC100507472 - uncharacterized LOC100507472 ncRNA 145.167-42 chr22 24322630 24323134 + 0.5 NA exon (NM_001254732, exon 4 of 15) exon (NM_001254732, exon 4 of 15) -19226 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 131.5-31 chr17 78001222 78001662 + 0.5 NA Intergenic L1ME3G|LINE|L1 -2795 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 119.833-73 chr5 148598379 148598665 + 0.5 NA intron (NM_001040172, intron 1 of 5) AluSx|SINE|Alu 38539 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 150.167-6 chr10 107139320 107139728 + 0.5 NA intron (NM_001206569, intron 1 of 25) GA-rich|Low_complexity|Low_complexity 25182 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 117-23 chr12 23014659 23014993 + 0.5 NA Intergenic LTR40b|LTR|ERVL -160810 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 127-36 chr15 60588264 60588656 + 0.5 NA intron (NM_134260, intron 1 of 11) (CATC)n|Simple_repeat|Simple_repeat 4066 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 135.167-34 chr15 67200341 67200938 + 0.5 NA TTS (NM_024666) TTS (NM_024666) 34484 NM_001145104 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 119.667-42 chr2 77549061 77549463 + 0.5 NA Intergenic Intergenic -26829 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 124.167-83 chr7 46283849 46284275 + 0.5 NA Intergenic Intergenic -362790 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 186-5 chr1 238533462 238534018 + 0.5 NA Intergenic Intergenic -47723 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 129.167-17 chr11 101545324 101545693 + 0.5 NA intron (NM_004621, intron 1 of 12) intron (NM_004621, intron 1 of 12) -25603 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 170-40 chr2 158607546 158607930 + 0.5 NA intron (NM_001005476, intron 4 of 20) intron (NM_001005476, intron 4 of 20) 127264 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 124.5-2 chr1 77832562 77833056 + 0.5 NA intron (NM_198549, intron 7 of 15) L2c|LINE|L2 53004 NM_001363584 374986 Hs.437755 NM_198549 ENSG00000180488 MIGA1 FAM73A mitoguardin 1 protein-coding 127.167-40 chr16 53997604 53997936 + 0.5 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) -41623 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 131.167-5 chr1 194731861 194732366 + 0.5 NA Intergenic Intergenic 1356602 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 121.167-85 chr8 29911289 29911733 + 0.5 NA Intergenic L1M2|LINE|L1 -10002 NR_024473 286135 Hs.376840 NR_024473 ENSG00000253279 LINC02209 FAM183CP long intergenic non-protein coding RNA 2209 ncRNA 169.333-68 chr7 137562195 137562743 + 0.5 NA intron (NM_001321710, intron 19 of 32) AluSq|SINE|Alu -218736 NM_002825 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 144-57 chr4 158270430 158270855 + 0.5 NA Intergenic L1ME4a|LINE|L1 60156 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 162.833-10 chr11 79016736 79017256 + 0.5 NA intron (NM_001098816, intron 6 of 33) MIRb|SINE|MIR 385113 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 130.333-6 chr1 150452583 150453006 + 0.5 NA intron (NM_015203, intron 7 of 10) AluSq|SINE|Alu -34625 NM_001271896 80222 Hs.288974 NM_025150 ENSG00000143374 TARS2 COXPD21|TARSL1|thrRS threonyl-tRNA synthetase 2, mitochondrial protein-coding 160.167-11 chr12 54740819 54741408 + 0.5 NA Intergenic L1PB1|LINE|L1 -92748 NM_053283 117159 Hs.350570 NM_053283 ENSG00000161634 DCD AIDD|DCD-1|DSEP|HCAP|PIF dermcidin protein-coding 116.5-51 chr3 81171384 81171735 + 0.5 NA Intergenic Intergenic 177691 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 120.667-6 chr1 107564966 107565511 + 0.5 NA Intergenic Intergenic 123261 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 231.833-3 chr14 46254978 46255649 + 0.5 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 191154 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 122.167-49 chr4 54478185 54478525 + 0.5 NA Intergenic Tigger13a|DNA|TcMar-Tigger 128776 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 118.833-19 chr13 50515227 50515643 + 0.5 NA intron (NR_109974, intron 5 of 6) L1MB2|LINE|L1 12014 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 166.333-9 chr10 55406085 55406448 + 0.5 NA intron (NM_001354404, intron 2 of 34) L2a|LINE|L2 -192776 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 155.333-58 chr21 15167460 15168089 + 0.5 NA Intergenic Intergenic -102774 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 147-34 chr2 55330862 55331397 + 0.5 NA intron (NM_001365480, intron 16 of 32) intron (NM_001365480, intron 16 of 32) 48810 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 162.167-45 chr6 37042223 37042595 + 0.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR 36754 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 177.667-65 chr6 141891184 141891674 + 0.5 NA Intergenic L1PA15|LINE|L1 197370 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 121.833-29 chr19 31717272 31717584 + 0.5 NA Intergenic Intergenic 125147 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 132.667-35 chr14 98979935 98980587 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 268648 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 133.167-65 chr8 3515137 3515624 + 0.5 NA intron (NM_033225, intron 10 of 69) intron (NM_033225, intron 10 of 69) -786929 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 135-49 chr2 224830785 224831133 + 0.5 NA intron (NM_001290263, intron 26 of 55) AluJb|SINE|Alu 116090 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 149-23 chr13 21739700 21740114 + 0.5 NA Intergenic Intergenic 68834 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 182.833-33 chr3 20750065 20750727 + 0.5 NA Intergenic Intergenic 407928 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 185.5-55 chr9 115972709 115973269 + 0.5 NA Intergenic Intergenic -47782 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 191.833-17 chr3 35953639 35954088 + 0.5 NA Intergenic L1PA15|LINE|L1 209387 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 188.833-21 chr2 148377650 148378195 + 0.5 NA intron (NM_018328, intron 5 of 14) intron (NM_018328, intron 5 of 14) -266829 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 152.833-42 chr3 13292358 13292713 + 0.5 NA Intergenic Intergenic 127787 NM_024923 23225 Hs.475525 NM_024923 ENSG00000132182 NUP210 GP210|POM210 nucleoporin 210 protein-coding 155.167-12 chr12 112264966 112265395 + 0.5 NA exon (NM_001109662, exon 16 of 76) exon (NM_001109662, exon 16 of 76) -101859 NR_106921 102465519 NR_106921 ENSG00000283793 MIR6861 hsa-mir-6861 microRNA 6861 ncRNA 146.167-31 chr2 28877606 28878081 + 0.5 NA Intergenic L2b|LINE|L2 -7534 NM_017910 55006 Hs.468026 NM_017910 ENSG00000171103 TRMT61B - tRNA methyltransferase 61B protein-coding 124.167-6 chr1 234430188 234430478 + 0.5 NA intron (NM_005646, intron 14 of 29) intron (NM_005646, intron 14 of 29) 48846 NM_005646 6894 Hs.498115 NM_005646 ENSG00000059588 TARBP1 TRM3|TRMT3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 139-37 chr3 15389922 15390265 + 0.5 NA Intergenic Intergenic 37451 NM_001330662 131965 Hs.149487 NM_152396 ENSG00000206562 METTL6 - methyltransferase like 6 protein-coding 166.833-19 chr18 7911130 7911758 + 0.5 NA intron (NM_002845, intron 4 of 30) L1MB8|LINE|L1 344128 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 136.833-33 chr2 88495434 88495858 + 0.5 NA Intergenic Charlie4z|DNA|hAT-Charlie -29003 NM_152670 200523 Hs.132104 NM_152670 ENSG00000172073 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 182.167-23 chr2 111654683 111655257 + 0.5 NA Intergenic Intergenic 116164 NR_039929 100616165 NR_039929 ENSG00000266063 MIR4771-2 - microRNA 4771-2 ncRNA 120.167-48 chr20 41089877 41090432 + 0.5 NA intron (NM_003286, intron 8 of 20) AluSz6|SINE|Alu -47389 NM_002660 5335 Hs.268177 NM_002660 ENSG00000124181 PLCG1 NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1 phospholipase C gamma 1 protein-coding 132.333-52 chr2 40945471 40945844 + 0.5 NA Intergenic L1MC4|LINE|L1 -433222 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 121-79 chr7 15985277 15985560 + 0.5 NA Intergenic Intergenic -225068 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 117.833-48 chr3 20823893 20824219 + 0.5 NA Intergenic Intergenic 481588 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 129.5 chr1 22099168 22099725 + 0.5 NA 3' UTR (NM_001791, exon 6 of 6) 3' UTR (NM_001791, exon 6 of 6) 43651 NM_030761 54361 Hs.25766 NM_030761 ENSG00000162552 WNT4 SERKAL|WNT-4 Wnt family member 4 protein-coding 204.167-11 chr15 71742791 71743411 + 0.5 NA intron (NM_001286429, intron 5 of 11) MamRep1527|LTR|LTR -51562 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 140.5-22 chr14 28004792 28005273 + 0.5 NA Intergenic L1P4a|LINE|L1 -331811 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 113.667-79 chr3 27220907 27221208 + 0.5 NA intron (NM_199347, intron 24 of 24) L1M4|LINE|L1 -4534 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 166.667-47 chr6 63628897 63629585 + 0.5 NA Intergenic AluSz6|SINE|Alu -6561 NM_001370348 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 190-55 chr6 36669881 36670470 + 0.5 NA Intergenic AluJb|SINE|Alu 4951 NR_109836 101154753 Hs.741557 NR_109836 ENSG00000281450 PANDAR PANDA promoter of CDKN1A antisense DNA damage activated RNA ncRNA 123.833-17 chr13 88863184 88863727 + 0.5 NA Intergenic Intergenic 236602 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 132-81 chr6 2982197 2982650 + 0.5 NA Intergenic MER31A|LTR|ERV1 -5544 NR_026856 401232 Hs.720158 NM_207495 LINC01011 - long intergenic non-protein coding RNA 1011 ncRNA 131.333-99 chr8 81059809 81060187 + 0.5 NA intron (NM_018440, intron 2 of 8) AluSz|SINE|Alu 52070 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 214.833 chr1 85152488 85153331 + 0.5 NA Intergenic Intergenic 19115 NR_039619 100616481 NR_039619 ENSG00000266110 MIR4423 mir-4423 microRNA 4423 ncRNA 146.833-64 chr8 98895410 98895774 + 0.5 NA intron (NM_001256312, intron 1 of 12) intron (NM_001256312, intron 1 of 12) 47018 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 114.667-33 chr15 53252615 53252984 + 0.5 NA Intergenic Intergenic 136434 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 220.333-4 chr10 94528430 94528900 + 0.5 NA intron (NM_015188, intron 11 of 12) AluSx1|SINE|Alu -17102 NM_001289067 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 148.333-80 chr5 17678432 17678890 + 0.5 NA Intergenic Intergenic -23023 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 150.167-22 chr16 78341618 78341994 + 0.5 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 242152 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 215.5-33 chr5 116918895 116919558 + 0.5 NA Intergenic Intergenic -157017 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 149.5-19 chr12 55021628 55022122 + 0.5 NA intron (NM_021191, intron 1 of 1) intron (NM_021191, intron 1 of 1) 1901 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 127-51 chr2 148575054 148575377 + 0.5 NA Intergenic L2|LINE|L2 -69536 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 142.833-47 chr3 187385645 187386233 + 0.5 NA Intergenic Intergenic 17554 NM_022147 64108 Hs.43388 NM_022147 ENSG00000136514 RTP4 IFRG28|Z3CXXC4 receptor transporter protein 4 protein-coding 181-8 chr10 76090625 76091234 + 0.5 NA intron (NM_001305581, intron 5 of 6) L1MB2|LINE|L1 308168 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 135.333 chr1 8297097 8297491 + 0.5 NA Intergenic Intergenic -20791 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5|IDDNPF solute carrier family 45 member 1 protein-coding 158.167-3 chr11 112276281 112276727 + 0.5 NA intron (NR_126004, intron 1 of 3) intron (NR_126004, intron 1 of 3) 5755 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 133.833-5 chr10 24398173 24398568 + 0.5 NA intron (NM_019590, intron 3 of 20) Tigger2a|DNA|TcMar-Tigger -51044 NM_001321681 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 147.833-18 chr13 60550071 60550489 + 0.5 NA intron (NM_030794, intron 12 of 13) intron (NM_030794, intron 12 of 13) -122675 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 116.333-73 chr4 150573891 150574203 + 0.5 NA intron (NM_001367550, intron 40 of 56) intron (NM_001367550, intron 40 of 56) -5042 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 131.333-57 chr2 195907584 195908050 + 0.5 NA intron (NM_018897, intron 25 of 64) intron (NM_018897, intron 25 of 64) 161020 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 150.5-22 chr14 34852700 34853128 + 0.5 NA intron (NM_013448, intron 3 of 26) intron (NM_013448, intron 3 of 26) -21277 NR_160776 112268124 Hs.509140 NR_160776 LOC112268124 - uncharacterized LOC112268124 ncRNA 258-4 chr3 130688490 130689383 + 0.5 NA intron (NM_014602, intron 14 of 19) intron (NM_014602, intron 14 of 19) 57893 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 127.167-82 chr7 52318532 52318861 + 0.5 NA Intergenic Intergenic -716937 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 147.5-13 chr10 47168995 47169553 + 0.5 NA Intergenic Tigger2a|DNA|TcMar-Tigger -130923 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 124.333-64 chr3 85628641 85629129 + 0.5 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) -97597 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 164.667-72 chr8 54819189 54819587 + 0.5 NA Intergenic L1M1|LINE|L1 203292 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 135.167-54 chr2 206475878 206476230 + 0.5 NA intron (NM_003812, intron 2 of 25) intron (NM_003812, intron 2 of 25) 32522 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 135.5-39 chr18 13877843 13878352 + 0.5 NA Intergenic Intergenic 37439 NM_000529 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 122.5-47 chr2 59514877 59515425 + 0.5 NA Intergenic Intergenic 297443 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 130-49 chr2 51341744 51342085 + 0.5 NA intron (NR_135237, intron 3 of 10) intron (NR_135237, intron 3 of 10) 309313 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 173.333-45 chr3 148200189 148200535 + 0.5 NA Intergenic Intergenic -80529 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 162.667-63 chr5 42701081 42701664 + 0.5 NA intron (NM_001242403, intron 6 of 9) Charlie1a|DNA|hAT-Charlie -55446 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 239.333-8 chr13 88862281 88863125 + 0.5 NA Intergenic Intergenic 235850 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 126.333-45 chr17 50795106 50795486 + 0.5 NA Intergenic AluJb|SINE|Alu 26646 NR_107026 102466918 NR_107026 ENSG00000278672 MIR8059 hsa-mir-8059 microRNA 8059 ncRNA 124.333-95 chr7 83404747 83405107 + 0.5 NA intron (NM_001178129, intron 9 of 16) intron (NM_001178129, intron 9 of 16) 236504 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 157-82 chr8 112659074 112659753 + 0.5 NA intron (NM_001363185, intron 15 of 66) intron (NM_001363185, intron 15 of 66) 15920 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 113.5-75 chr6 96129765 96130130 + 0.5 NA intron (NM_006581, intron 2 of 2) intron (NM_006581, intron 2 of 2) 113973 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 175.5-10 chr10 75424145 75424623 + 0.5 NA Intergenic Intergenic -7240 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 151-65 chr6 51416659 51417283 + 0.5 NA Intergenic Intergenic -204899 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 161.667-17 chr10 51249935 51250545 + 0.5 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -49333 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 126.333-58 chr2 54076361 54076697 + 0.5 NA intron (NM_001320587, intron 3 of 5) intron (NM_001320587, intron 3 of 5) -39086 NM_001320590 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 147.5-70 chr4 96460255 96460644 + 0.5 NA intron (NR_147149, intron 2 of 3) intron (NR_147149, intron 2 of 3) 149746 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 134.167-20 chr12 99332832 99333172 + 0.5 NA intron (NM_152788, intron 12 of 25) L2c|LINE|L2 -177912 NM_001352189 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 122.333-13 chr10 79154013 79154388 + 0.5 NA intron (NM_020338, intron 3 of 24) intron (NM_020338, intron 3 of 24) 85234 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 152.833-75 chrX 51189947 51190392 + 0.5 NA Intergenic HAL1b|LINE|L1 -18748 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 181.333-46 chr5 40303654 40304211 + 0.5 NA Intergenic Intergenic 251641 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 135.5-44 chr2 83529789 83530252 + 0.5 NA Intergenic Intergenic 7206 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 199.5-41 chr7 39431603 39432108 + 0.5 NA intron (NM_001370959, intron 6 of 9) intron (NM_001370959, intron 6 of 9) -25509 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 153-62 chr9 114994205 114994636 + 0.5 NA Intergenic L1ME5|LINE|L1 -63825 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A TNF superfamily member 8 protein-coding 113.833-47 chr2 209159758 209160186 + 0.5 NA Intergenic Intergenic -264075 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 122.833-20 chr13 65071798 65072230 + 0.5 NA Intergenic L1MC1|LINE|L1 -794033 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 189.333-19 chr17 70914898 70915460 + 0.5 NA Intergenic Intergenic 287000 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 148.167-81 chr8 69320164 69320542 + 0.5 NA Intergenic L1M6|LINE|L1 127891 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 122.333-67 chr22 21092263 21092733 + 0.5 NA Intergenic AluJb|SINE|Alu -10518 NR_037566 400892 Hs.745077 NM_207474 BCRP2 BCR-2|BCR2|BCRL2 BCR pseudogene 2 pseudo 114.667-111 chr6 152419966 152420299 + 0.5 NA intron (NM_182961, intron 39 of 145) LTR49-int|LTR|ERV1 39602 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 144-30 chr2 10781169 10781536 + 0.5 NA intron (NM_001039362, intron 12 of 13) AluSx1|SINE|Alu 31433 NM_005742 10130 Hs.212102 NM_005742 ENSG00000143870 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A member 6 protein-coding 168.167-27 chr18 14097773 14098281 + 0.5 NA intron (NR_033354, intron 1 of 5) intron (NR_033354, intron 1 of 5) 34408 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 162.667-7 chr10 23976067 23976572 + 0.5 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) -232472 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 128-63 chr3 52962234 52962588 + 0.5 NA intron (NM_016329, intron 2 of 20) L1MC5a|LINE|L1 -64863 NM_198563 375346 Hs.744189 NM_198563 ENSG00000213533 STIMATE TMEM110 STIM activating enhancer protein-coding 196-6 chr10 52630675 52631280 + 0.5 NA intron (NR_155748, intron 1 of 2) MLT1B|LTR|ERVL-MaLR 124427 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 122.167-65 chr7 37643861 37644418 + 0.5 NA Intergenic MER76|LTR|ERVL -39627 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 149.5-12 chr10 93626936 93627369 + 0.5 NA intron (NM_006204, intron 7 of 21) AluSx|SINE|Alu 14615 NM_006204 5146 Hs.658121 NM_006204 ENSG00000095464 PDE6C ACHM5|COD4|PDEA2 phosphodiesterase 6C protein-coding 177.167-3 chr10 72233451 72233991 + 0.5 NA non-coding (NR_038391, exon 3 of 3) non-coding (NR_038391, exon 3 of 3) -16587 NM_001369085 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 127-78 chr4 63354452 63354958 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 1054745 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 130.333-97 chr8 140970957 140971378 + 0.5 NA intron (NM_001352719, intron 1 of 32) Cheshire|DNA|hAT-Charlie 29837 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 132-75 chr5 124407737 124408135 + 0.5 NA intron (NR_125774, intron 3 of 5) intron (NR_125774, intron 3 of 5) 30584 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 148.833-38 chr21 22786721 22787131 + 0.5 NA Intergenic LTR40A1|LTR|ERVL -292358 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 150.667-3 chr1 76304554 76304882 + 0.5 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 229972 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 159.667-71 chr5 61072124 61072503 + 0.5 NA intron (NM_174889, intron 1 of 3) intron (NM_174889, intron 1 of 3) -90003 NR_109908 101928630 Hs.575209 NR_109908 SMIM15-AS1 CTC-436P18.1 SMIM15 antisense RNA 1 ncRNA 113.167-26 chr17 43455395 43455867 + 0.5 NA Intergenic MER44B|DNA|TcMar-Tigger 10825 NR_031751 100313779 NR_031751 ENSG00000284344 MIR2117 - microRNA 2117 ncRNA 132.5-64 chr4 37483337 37483717 + 0.5 NA intron (NM_001104629, intron 1 of 3) intron (NM_001104629, intron 1 of 3) 29602 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 145.167-21 chr12 91852607 91853023 + 0.5 NA Intergenic L1MB8|LINE|L1 288898 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 128.667-97 chr5 147615057 147615496 + 0.5 NA intron (NM_001282282, intron 18 of 20) intron (NM_001282282, intron 18 of 20) 55282 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 127-76 chr4 41040725 41041295 + 0.5 NA intron (NM_001330658, intron 3 of 15) AluY|SINE|Alu 173532 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 119-3 chr1 58495886 58496414 + 0.5 NA intron (NM_145243, intron 8 of 8) intron (NM_145243, intron 8 of 8) 50576 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 197.833-37 chr8 114797039 114797579 + 0.5 NA Intergenic MER9a3|LTR|ERVK 870704 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 115.167-86 chr5 85970413 85970807 + 0.5 NA Intergenic Intergenic -311834 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 117.167-76 chr5 35503088 35503474 + 0.5 NA Intergenic Intergenic -114582 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 117.167-75 chr5 21837700 21838140 + 0.5 NA intron (NM_004061, intron 8 of 14) intron (NM_004061, intron 8 of 14) -46534 NR_132787 106635539 NR_132787 SNORA105A - small nucleolar RNA, H/ACA box 105A snoRNA 126-79 chr6 1499465 1499890 + 0.5 NA Intergenic AluSx|SINE|Alu -105854 NR_125804 101927703 Hs.607964 NR_125804 FOXCUT LINC01379|TCONS_00011636 FOXC1 upstream transcript ncRNA 139-2 chr1 239445242 239445728 + 0.5 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 58917 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 127.333-86 chr4 174242949 174243503 + 0.5 NA intron (NM_012180, intron 3 of 5) intron (NM_012180, intron 3 of 5) -22828 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 134.833-13 chr12 55198713 55199099 + 0.5 NA Intergenic L1M3d|LINE|L1 -22119 NM_001005280 121364 Hs.554557 NM_001005280 ENSG00000179919 OR10A7 OR12-6 olfactory receptor family 10 subfamily A member 7 protein-coding 160.667-49 chr20 40634032 40634482 + 0.5 NA Intergenic Intergenic 54979 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 167-57 chr7 98987976 98988579 + 0.5 NA intron (NM_003496, intron 60 of 70) L1MB5|LINE|L1 -24888 NR_110102 101927550 Hs.636663 NR_110102 LOC101927550 - uncharacterized LOC101927550 ncRNA 142.333-92 chr7 11101689 11102095 + 0.5 NA intron (NR_033436, intron 15 of 16) intron (NR_033436, intron 15 of 16) 128020 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 196.333-18 chr2 37718177 37718728 + 0.5 NA Intergenic L2c|LINE|L2 -45917 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 126.833-74 chr9 111712454 111712829 + 0.5 NA intron (NM_173521, intron 16 of 25) L2c|LINE|L2 46895 NM_001080551 158401 Hs.428209 NM_173521 ENSG00000165181 SHOC1 C9orf84|ZIP2|ZIP2H shortage in chiasmata 1 protein-coding 159.333-27 chr14 74747842 74748300 + 0.5 NA Intergenic L1M3|LINE|L1 -15245 NM_019589 56252 Hs.531111 NM_019589 ENSG00000119596 YLPM1 C14orf170|PPP1R169|ZAP113|ZAP3 YLP motif containing 1 protein-coding 138.667-54 chr20 55529543 55529990 + 0.5 NA Intergenic Intergenic -102569 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 143.667-93 chr6 131925033 131925438 + 0.5 NA Intergenic Intergenic 26137 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 138.667-71 chr4 114028833 114029178 + 0.5 NA Intergenic L1ME3|LINE|L1 -49358 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 171.833-19 chr17 67218343 67218824 + 0.5 NA intron (NM_001330447, intron 4 of 32) intron (NM_001330447, intron 4 of 32) -26193 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 134.167-28 chr16 64337743 64338049 + 0.5 NA Intergenic Intergenic 784167 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 159.667-7 chr1 115698876 115699397 + 0.5 NA TTS (NM_138959) TTS (NM_138959) 56507 NM_001172412 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 147.833-17 chr13 21664302 21664820 + 0.5 NA Intergenic L1ME4b|LINE|L1 -6512 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 155.5-17 chr15 34248165 34248605 + 0.5 NA intron (NM_001042496, intron 13 of 25) L1ME3A|LINE|L1 23369 NR_147140 51234 Hs.250905 NM_016454 ENSG00000128463 EMC4 PIG17|TMEM85 ER membrane protein complex subunit 4 protein-coding 123.5-57 chr4 35822329 35822828 + 0.5 NA Intergenic MIRb|SINE|MIR 421361 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 193.667-13 chr14 48703135 48703758 + 0.5 NA Intergenic Intergenic 882934 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 205.833-21 chr3 32737880 32738291 + 0.5 NA intron (NM_015442, intron 13 of 18) L1M5|LINE|L1 42544 NM_001256742 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 144.667-71 chr4 92130207 92130579 + 0.5 NA Intergenic L1MA4A|LINE|L1 146909 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 129.667-45 chr2 37325219 37325560 + 0.5 NA Intergenic CpG -8305 NM_005813 23683 Hs.660757 NM_005813 ENSG00000115825 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 114.167-37 chr16 64005604 64005893 + 0.5 NA Intergenic L1M4b|LINE|L1 1116315 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 138.333-44 chr16 75593976 75594379 + 0.5 NA Intergenic MER74A|LTR|ERVL 27798 NM_007285 11345 Hs.461379 NM_007285 ENSG00000034713 GABARAPL2 ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2 GABA type A receptor associated protein like 2 protein-coding 174-17 chr13 41264643 41265036 + 0.5 NA intron (NM_001354073, intron 1 of 14) MIR|SINE|MIR -1263 NM_004294 9617 Hs.382176 NM_004294 ENSG00000120662 MTRF1 MRF1|MTTRF1|RF1 mitochondrial translation release factor 1 protein-coding 154.667-21 chr13 98216398 98216819 + 0.5 NA intron (NM_005766, intron 2 of 26) intron (NM_005766, intron 2 of 26) 8084 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 144.833-75 chr9 85974963 85975313 + 0.5 NA exon (NM_001321882, exon 8 of 23) exon (NM_001321882, exon 8 of 23) 33609 NM_001321882 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 124-32 chr14 33399805 33400241 + 0.5 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -308914 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 113.667-74 chr2 209543596 209543989 + 0.5 NA intron (NM_001039538, intron 2 of 14) intron (NM_001039538, intron 2 of 14) -35544 NM_001363913 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 137.5-69 chr4 44613152 44613456 + 0.5 NA Intergenic Intergenic 38337 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 129.333-3 chr1 157052492 157052901 + 0.5 NA Intergenic L1ME1|LINE|L1 -6954 NM_198236 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding 132.167-52 chr4 22938267 22938660 + 0.5 NA Intergenic L2a|LINE|L2 224374 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 116.5-75 chr6 88016732 88017032 + 0.5 NA Intergenic HERVL40-int|LTR|ERVL -30959 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 121.333-68 chr3 127622594 127623231 + 0.5 NA TTS (NM_004526) TTS (NM_004526) -6273 NM_015720 50512 Hs.591290 NM_015720 ENSG00000114631 PODXL2 EG|PODLX2 podocalyxin like 2 protein-coding 192.833-20 chr2 114502717 114503308 + 0.5 NA intron (NM_001321908, intron 2 of 25) (GTGTGT)n|Simple_repeat|Simple_repeat 41435 NM_001321905 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 160.167-44 chr3 90025168 90025628 + 0.5 NA Intergenic L2c|LINE|L2 917777 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 141.667-105 chr7 84106933 84107303 + 0.5 NA intron (NM_006080, intron 4 of 16) intron (NM_006080, intron 4 of 16) 87671 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 118-13 chr10 19149801 19150102 + 0.5 NA intron (NM_001142308, intron 11 of 39) L1ME1|LINE|L1 101150 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 124-62 chr20 51169120 51169519 + 0.5 NA Intergenic L1MEf|LINE|L1 -146212 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 156.5-62 chr4 133108716 133109135 + 0.5 NA intron (NR_125885, intron 7 of 8) intron (NR_125885, intron 7 of 8) 40191 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 147.333-3 chr1 104033594 104033986 + 0.5 NA Intergenic MIRc|SINE|MIR -39233 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 115.833 chr1 82602537 82602920 + 0.5 NA Intergenic LTR16|LTR|ERVL -300455 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 163-29 chr2 39774338 39774792 + 0.5 NA intron (NR_135664, intron 1 of 11) intron (NR_135664, intron 1 of 11) 4693 NM_025264 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 191.333-29 chr5 69064000 69064704 + 0.5 NA Intergenic AluSx3|SINE|Alu -29662 NM_024055 64924 Hs.631975 NM_022902 ENSG00000145740 SLC30A5 ZNT5|ZNTL1|ZTL1|ZnT-5 solute carrier family 30 member 5 protein-coding 148.167-21 chr14 54499724 54500237 + 0.5 NA Intergenic Intergenic -9926 NM_006568 10668 Hs.59106 NM_006568 ENSG00000100532 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 132.5-32 chr15 48098691 48099167 + 0.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -22061 NM_205850 283652 Hs.710240 NM_205850 ENSG00000188467 SLC24A5 JSX|NCKX5|OCA6|SHEP4 solute carrier family 24 member 5 protein-coding 116.5-56 chr3 120023271 120023669 + 0.5 NA intron (NM_002093, intron 1 of 11) intron (NM_002093, intron 1 of 11) 61178 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 157.5-58 chr5 159824609 159825324 + 0.5 NA intron (NR_109891, intron 2 of 2) MLT1G3|LTR|ERVL-MaLR 46418 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 118-122 chr9 91259501 91259928 + 0.5 NA intron (NM_001698, intron 6 of 9) L1MEc|LINE|L1 102210 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 125-7 chr1 200796424 200796855 + 0.5 NA intron (NM_001297707, intron 2 of 17) L1M4|LINE|L1 57067 NM_001297707 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 157-78 chr7 146614304 146614769 + 0.5 NA Intergenic Intergenic -159735 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 139.333-14 chr10 93573972 93574304 + 0.5 NA intron (NM_181745, intron 1 of 3) intron (NM_181745, intron 1 of 3) 7473 NM_181745 338557 Hs.661022 NM_181745 ENSG00000186188 FFAR4 BMIQ10|GPR120|GPR129|GT01|O3FAR1|PGR4 free fatty acid receptor 4 protein-coding 160.167-33 chr20 53921109 53921497 + 0.5 NA Intergenic Intergenic -45594 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 164.667-79 chrX 50799975 50800748 + 0.5 NA intron (NR_027121, intron 1 of 9) intron (NR_027121, intron 1 of 9) 13683 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 124.333-98 chr8 30247768 30248267 + 0.5 NA Intergenic Intergenic 91648 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 190.167-33 chr3 33738387 33738823 + 0.5 NA Intergenic Charlie25|DNA|hAT-Charlie -20351 NM_001365629 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 156-15 chr11 83226431 83227011 + 0.5 NA intron (NM_001300975, intron 6 of 10) AluJr4|SINE|Alu 33009 NM_001300976 338699 Hs.503438 NM_182603 ENSG00000137494 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 135-91 chr8 100370442 100370968 + 0.5 NA Intergenic MER103C|DNA|hAT-Charlie -12058 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 188.5-47 chr6 42749106 42749580 + 0.5 NA intron (NM_001318819, intron 1 of 13) L1MA4|LINE|L1 2356 NM_001318819 23506 Hs.658033 NM_015349 ENSG00000112624 BICRAL GLTSCR1L|KIAA0240 BRD4 interacting chromatin remodeling complex associated protein like protein-coding 113.5-77 chr6 147084868 147085360 + 0.5 NA intron (NR_034115, intron 4 of 10) AluSc8|SINE|Alu -73811 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 146.333-39 chr18 244735 245131 + 0.5 NA intron (NM_005131, intron 11 of 20) L1MEi|LINE|L1 23114 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 127.167-79 chr6 156680221 156680516 + 0.5 NA Intergenic Intergenic -97487 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 172.5-17 chr13 31444544 31444943 + 0.5 NA Intergenic L1MEi|LINE|L1 244768 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 163.333-49 chr3 96725974 96726604 + 0.5 NA Intergenic Intergenic -88305 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 122.833-27 chr14 76163300 76163595 + 0.5 NA intron (NM_001322028, intron 2 of 9) intron (NM_001322028, intron 2 of 9) 9093 NR_110314 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 182-54 chr8 11696657 11697154 + 0.5 NA intron (NM_001308094, intron 1 of 6) intron (NM_001308094, intron 1 of 6) -7297 NM_002052 2626 Hs.243987 NM_002052 ENSG00000136574 GATA4 ASD2|TACHD|TOF|VSD1 GATA binding protein 4 protein-coding 125.833-33 chr18 1730643 1731136 + 0.5 NA Intergenic L3|LINE|CR1 -371260 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 126.833-69 chr8 135245792 135246088 + 0.5 NA intron (NR_120396, intron 1 of 4) L1PB1|LINE|L1 11809 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 161.833-20 chr2 121865955 121866552 + 0.5 NA Intergenic Intergenic 110602 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 152-57 chr9 109582799 109583416 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -57681 NM_001037293 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 149-27 chr14 59214043 59214610 + 0.5 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) 25659 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 184.167-9 chr10 80634113 80634787 + 0.5 NA intron (NM_207372, intron 6 of 6) intron (NM_207372, intron 6 of 6) -15347 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 191-11 chr14 45632597 45633006 + 0.5 NA Intergenic MER57B2|LTR|ERV1 82801 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 183-27 chr2 122816427 122817036 + 0.5 NA Intergenic L1MA7|LINE|L1 256750 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 120.333-91 chr5 11544484 11544724 + 0.5 NA intron (NM_001288715, intron 2 of 20) L1ME1|LINE|L1 44313 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 150.667-75 chr5 41202676 41202989 + 0.5 NA intron (NM_000065, intron 2 of 17) MamRep434|DNA|TcMar-Tigger 10700 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 144.167-43 chr2 202823543 202823916 + 0.5 NA intron (NM_001288624, intron 2 of 3) intron (NM_001288624, intron 2 of 3) 5505 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 149.833-31 chr4 73935114 73935636 + 0.5 NA Intergenic L1ME3D|LINE|L1 46652 NM_002619 5196 Hs.81564 NM_002619 ENSG00000163737 PF4 CXCL4|PF-4|SCYB4 platelet factor 4 protein-coding 209.333-9 chr14 78207446 78207925 + 0.5 NA intron (NR_073547, intron 1 of 20) L2a|LINE|L2 37312 NR_073547 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 200.5-47 chr9 27044339 27044973 + 0.5 NA intron (NM_025103, intron 13 of 19) intron (NM_025103, intron 13 of 19) -38984 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 132-74 chr5 76269353 76269807 + 0.5 NA intron (NM_014979, intron 4 of 12) intron (NM_014979, intron 4 of 12) -133705 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 146.167-27 chr17 57232277 57232855 + 0.5 NA Intergenic Intergenic -23285 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 117-37 chr16 3223423 3223808 + 0.5 NA 3' UTR (NM_001145446, exon 5 of 5) 3' UTR (NM_001145446, exon 5 of 5) 8053 NR_002169 26184 Hs.651203 NR_002169 ENSG00000203581 OR1F2P OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91 olfactory receptor family 1 subfamily F member 2 pseudogene pseudo 125-69 chr6 16633170 16633544 + 0.5 NA intron (NM_000332, intron 4 of 8) intron (NM_000332, intron 4 of 8) 126827 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 125-80 chr6 138286650 138287028 + 0.5 NA exon (NM_020340, exon 16 of 34) exon (NM_020340, exon 16 of 34) -68349 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 184.5-3 chr10 28899446 28899996 + 0.5 NA Intergenic AluY|SINE|Alu 53313 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 146.333-99 chr9 77608265 77608697 + 0.5 NA intron (NM_004297, intron 1 of 6) intron (NM_004297, intron 1 of 6) 39841 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 138.833-74 chr6 27099899 27100243 + 0.5 NA Intergenic Intergenic 32725 NM_021058 8970 Hs.591807 NM_021058 ENSG00000124635 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1 H2B family member j protein-coding 124.667-3 chr1 99274652 99275151 + 0.5 NA intron (NM_014839, intron 1 of 6) intron (NM_014839, intron 1 of 6) 10609 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 170.5-42 chr3 1935770 1936181 + 0.5 NA Intergenic L1PA7|LINE|L1 -162828 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 148.5 chr1 28929501 28930064 + 0.5 NA intron (NM_001166006, intron 1 of 14) AluSp|SINE|Alu 15206 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 163-26 chr18 22643177 22643651 + 0.5 NA Intergenic Intergenic 143423 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 220.667-11 chr14 82297982 82298794 + 0.5 NA Intergenic Intergenic -344244 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 135-82 chr6 607425 607723 + 0.5 NA intron (NM_018303, intron 7 of 27) MER3|DNA|hAT-Charlie 49390 NM_148959 135458 Hs.669039 NM_148959 ENSG00000188996 HUS1B - HUS1 checkpoint clamp component B protein-coding 144.833-71 chr8 82602558 82602920 + 0.5 NA Intergenic L1M5|LINE|L1 -309365 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 119.5-65 chr3 105456393 105456663 + 0.5 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 89619 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 140-56 chr4 30454078 30454743 + 0.5 NA Intergenic Intergenic -265959 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 259-19 chr4 122636184 122636827 + 0.5 NA intron (NR_104126, intron 7 of 10) MIR|SINE|MIR -15439 NM_021803 59067 Hs.567559 NM_021803 ENSG00000138684 IL21 CVID11|IL-21|Za11 interleukin 21 protein-coding 123.167-81 chr5 75750480 75750816 + 0.5 NA Intergenic L1MD2|LINE|L1 -33211 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 157-57 chr3 101848346 101848750 + 0.5 NA promoter-TSS (NM_031419) promoter-TSS (NM_031419) -966 NM_031419 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 128.167-43 chr21 18168468 18168988 + 0.5 NA intron (NM_001204178, intron 2 of 5) L1M4|LINE|L1 -76105 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 255.833-13 chr4 62215457 62216133 + 0.5 NA Intergenic Intergenic -54030 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 120.833-37 chr2 210300572 210301128 + 0.5 NA intron (NM_079422, intron 2 of 6) intron (NM_079422, intron 2 of 6) 2765 NM_079422 4632 Hs.187338 NM_079420 ENSG00000168530 MYL1 MLC1F|MLC3F|MYOFTA myosin light chain 1 protein-coding 131.833-16 chr14 59960912 59961406 + 0.5 NA intron (NR_075071, intron 10 of 32) intron (NR_075071, intron 10 of 32) 41446 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 120.833-67 chr8 26170374 26170651 + 0.5 NA Intergenic AluSz6|SINE|Alu -120996 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 171.333-17 chr10 130450649 130451302 + 0.5 NA Intergenic Intergenic 314566 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 144.5-40 chr2 20232683 20233202 + 0.5 NA Intergenic Intergenic -7509 NM_001006946 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 145.667-9 chr1 215029217 215029596 + 0.5 NA intron (NM_001017424, intron 1 of 6) L1MC1|LINE|L1 23864 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 156.167-13 chr11 88550710 88551141 + 0.5 NA intron (NM_001143831, intron 7 of 8) MIR|SINE|MIR 46349 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 128.167-21 chr14 23246030 23246378 + 0.5 NA intron (NM_001370218, intron 5 of 15) AluSx3|SINE|Alu 8268 NM_001282322 100507650 NM_001282322 ENSG00000215277 RNF212B C14orf164 ring finger protein 212B protein-coding 153.5-49 chr4 89983722 89984156 + 0.5 NA Intergenic Intergenic 89085 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 122.5-97 chr8 77112770 77113214 + 0.5 NA Intergenic Intergenic -111948 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 134.5-73 chr8 117654111 117654554 + 0.5 NA Intergenic MIR|SINE|MIR 133619 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 139-30 chr2 133620139 133620476 + 0.5 NA Intergenic L1PB1|LINE|L1 -51844 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 201.667-51 chr9 13763702 13764343 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -163949 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 115.5-11 chr10 13553750 13554173 + 0.5 NA Intergenic L1M4a1|LINE|L1 -24947 NM_001369863 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 167-36 chr21 20017087 20017524 + 0.5 NA Intergenic L1MC4a|LINE|L1 -117550 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 184.667-36 chr4 36826779 36827362 + 0.5 NA Intergenic THE1-int|LTR|ERVL-MaLR -174709 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 135-31 chr18 9666809 9667397 + 0.5 NA Intergenic L1MC5a|LINE|L1 -41198 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 134.167-8 chr10 17479808 17480106 + 0.5 NA Intergenic Intergenic -25362 NR_144322 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 159.333-5 chr1 212882160 212882767 + 0.5 NA intron (NM_014053, intron 3 of 9) L1ME3C|LINE|L1 24188 NM_014053 28982 Hs.7055 NM_014053 ENSG00000162769 FLVCR1 AXPC1|FLVCR|MFSD7B|PCA|PCARP|SLC49A1 feline leukemia virus subgroup C cellular receptor 1 protein-coding 115.333-5 chr1 158045050 158045449 + 0.5 NA intron (NM_001286349, intron 1 of 12) intron (NM_001286349, intron 1 of 12) 19699 NR_145471 100505785 Hs.664656 NR_145471 KIRREL1-IT1 KIRREL-IT1 KIRREL1 intronic transcript 1 ncRNA 194.167-13 chr14 55738405 55738915 + 0.5 NA Intergenic AluY|SINE|Alu -27585 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 127.333-87 chr5 20292135 20292518 + 0.5 NA intron (NM_001349556, intron 1 of 13) intron (NM_001349556, intron 1 of 13) -13225 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 142-35 chr17 51059933 51060437 + 0.5 NA intron (NM_001130527, intron 2 of 29) MLT1B|LTR|ERVL-MaLR -13307 NM_001251971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 168.167-18 chr15 57272851 57273496 + 0.5 NA exon (NM_001322151, exon 19 of 21) exon (NM_001322151, exon 19 of 21) 5484 NR_145748 109616990 NR_145748 ENSG00000239035 SNORD13D - small nucleolar RNA, C/D box 13D snoRNA 201.5-28 chr4 97683750 97684220 + 0.5 NA intron (NM_174952, intron 10 of 10) L1MC2|LINE|L1 317059 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 174.833-16 chr18 4742500 4742930 + 0.5 NA Intergenic L1PB2|LINE|L1 -287408 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 128.667-40 chr14 56666116 56666449 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 86484 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 139-58 chr6 27394323 27394830 + 0.5 NA intron (NM_001076781, intron 1 of 2) MSTA-int|LTR|ERVL-MaLR 5858 NM_001322289 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 143.167-77 chr7 123610841 123611288 + 0.5 NA intron (NM_080928, intron 1 of 9) AluSg4|SINE|Alu 2041 NM_080928 142685 Hs.83916 NM_080928 ENSG00000146809 ASB15 - ankyrin repeat and SOCS box containing 15 protein-coding 193-40 chr6 80013380 80014067 + 0.5 NA intron (NM_003318, intron 9 of 21) intron (NM_003318, intron 9 of 21) 9074 NM_003318 7272 Hs.169840 NM_003318 ENSG00000112742 TTK CT96|ESK|MPH1|MPS1|MPS1L1|PYT TTK protein kinase protein-coding 135.333-9 chr10 44031271 44031703 + 0.5 NA Intergenic Intergenic 119085 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 147.667-64 chr6 103177694 103178131 + 0.5 NA Intergenic Intergenic 1681634 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 159.667-76 chr6 46173125 46173502 + 0.5 NA Intergenic Intergenic -2303 NM_001290073 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 130.667-95 chr8 116041644 116041982 + 0.5 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 283246 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 161.833-34 chr5 51887097 51887667 + 0.5 NA Intergenic Intergenic -120649 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 159.833-51 chr8 118755036 118755530 + 0.5 NA Intergenic MIRb|SINE|MIR -133320 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 128.333-69 chr2 173655504 173656036 + 0.5 NA Intergenic Intergenic 300898 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 166-32 chr2 9904897 9905257 + 0.5 NA intron (NM_001318977, intron 8 of 13) intron (NM_001318977, intron 8 of 13) -46616 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 193.667-29 chr2 121270674 121271176 + 0.5 NA intron (NM_014553, intron 2 of 14) AluSx1|SINE|Alu 14277 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 143.333-6 chr10 74341804 74342321 + 0.5 NA intron (NM_001369124, intron 4 of 9) L1MB7|LINE|L1 165299 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 163-33 chr2 151976335 151976877 + 0.5 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) -2628 NM_001330117 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 143-22 chr13 42262722 42263111 + 0.5 NA Intergenic Intergenic -9236 NM_016248 11215 Hs.105105 NM_016248 ENSG00000023516 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A-kinase anchoring protein 11 protein-coding 204.167-34 chr9 30039986 30040627 + 0.5 NA Intergenic Intergenic 368148 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 147.167-12 chr10 82597222 82597755 + 0.5 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -364568 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 137.5-16 chr10 102315899 102316231 + 0.5 NA intron (NM_001199378, intron 3 of 39) intron (NM_001199378, intron 3 of 39) 70533 NM_004193 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 169.333-30 chr18 2177320 2177813 + 0.5 NA Intergenic Intergenic 393939 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 182.5-20 chr2 53458568 53459167 + 0.5 NA Intergenic MSTB2|LTR|ERVL-MaLR -308916 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 120.5-11 chr10 43352641 43353033 + 0.5 NA Intergenic AluSx|SINE|Alu -18799 NM_173160 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 125.333-18 chr10 52618700 52619197 + 0.5 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 136456 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 117-20 chr11 76550392 76550669 + 0.5 NA 3' UTR (NM_001300943, exon 21 of 21) 3' UTR (NM_001300943, exon 21 of 21) 105505 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 133.833-9 chr10 52910746 52911236 + 0.5 NA Intergenic L1MB5|LINE|L1 -139291 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 119.833-37 chr19 8830303 8830798 + 0.5 NA intron (NM_144693, intron 2 of 9) intron (NM_144693, intron 2 of 9) 1754 NM_144693 148156 Hs.349444 NM_144693 ENSG00000167785 ZNF558 - zinc finger protein 558 protein-coding 133.167-47 chr4 139023921 139024446 + 0.5 NA intron (NM_012118, intron 1 of 2) AluJr|SINE|Alu 8402 NM_012118 25819 Hs.639842 NM_012118 ENSG00000151014 NOCT CCR4L|CCRN4L|Ccr4c|NOC nocturnin protein-coding 207.667-48 chr8 29668264 29668806 + 0.5 NA Intergenic MIR3|SINE|MIR 79574 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 120.333-118 chr8 104096465 104096922 + 0.5 NA intron (NM_001348498, intron 19 of 24) AluSc|SINE|Alu -126642 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 142.5-52 chr3 180580731 180581286 + 0.5 NA Intergenic Intergenic -21155 NM_001042601 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 177.667-16 chr12 64918514 64918947 + 0.5 NA intron (NR_033988, intron 2 of 2) intron (NR_033988, intron 2 of 2) 34956 NR_033988 400046 Hs.591032 NR_033988 ENSG00000255693 LINC02389 - long intergenic non-protein coding RNA 2389 ncRNA 118.667-24 chr11 82229609 82230101 + 0.5 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 174058 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 142.667-3 chr1 28791635 28792068 + 0.5 NA Intergenic AluSx1|SINE|Alu -20319 NM_000911 4985 Hs.372 NM_000911 ENSG00000116329 OPRD1 DOP|DOR|DOR1|OPRD opioid receptor delta 1 protein-coding 148.5-27 chr16 52400401 52400841 + 0.5 NA Intergenic L1M5|LINE|L1 142057 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 193.167-27 chr4 53270100 53270631 + 0.5 NA intron (NM_152540, intron 4 of 8) L1M5|LINE|L1 95696 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 137.333-88 chr6 103635023 103635541 + 0.5 NA Intergenic L1PBa|LINE|L1 1224264 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 150.667-26 chr13 72453198 72453833 + 0.5 NA Intergenic Intergenic 274114 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 145.667-12 chr10 88706021 88706412 + 0.5 NA Intergenic Intergenic -18328 NM_001080518 643414 Hs.632092 NM_001080518 ENSG00000204021 LIPK LIPL2|bA186O14.2 lipase family member K protein-coding 164.167-19 chr14 66841302 66842039 + 0.5 NA intron (NM_001024218, intron 4 of 21) L2a|LINE|L2 334263 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 159.5-26 chr2 213778947 213779477 + 0.5 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 21145 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 215-3 chr1 166887666 166888400 + 0.5 NA Intergenic Intergenic -11769 NM_053053 117143 Hs.435967 NM_053053 ENSG00000152382 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 116.167-84 chr9 25705925 25706468 + 0.5 NA Intergenic L1MC4a|LINE|L1 -27338 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 120.167-64 chr5 88176406 88176719 + 0.5 NA Intergenic AluJb|SINE|Alu 92283 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 231-21 chr4 62926525 62927340 + 0.5 NA Intergenic Intergenic -765167 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 135.5-55 chr3 78272151 78272517 + 0.5 NA Intergenic Intergenic -223371 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 125.5-87 chr9 122302719 122303090 + 0.5 NA intron (NM_199177, intron 5 of 5) L1MB8|LINE|L1 38022 NM_001346347 92399 Hs.368011 NM_138777 ENSG00000148187 MRRF MRFF|MTRRF|RRF mitochondrial ribosome recycling factor protein-coding 140.5-15 chr12 5231239 5231574 + 0.5 NA Intergenic Intergenic 11745 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 184.167-40 chr5 56263482 56263941 + 0.5 NA Intergenic Intergenic -30381 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 171-26 chr2 153956404 153957143 + 0.5 NA intron (NM_052917, intron 3 of 12) MER66-int|LTR|ERV1 12379 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 138.167-20 chr14 72754909 72755231 + 0.5 NA intron (NM_001280544, intron 2 of 9) intron (NM_001280544, intron 2 of 9) 137579 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 215.667-2 chr1 108552247 108552765 + 0.5 NA Intergenic Intergenic -7594 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 196.833-15 chr3 108011420 108011866 + 0.5 NA Intergenic Intergenic 79445 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 147.167-18 chr11 120507336 120507868 + 0.5 NA Intergenic Intergenic -4144 NM_014619 2900 Hs.538738 NM_014619 ENSG00000149403 GRIK4 EAA1|GRIK|GluK4|KA1 glutamate ionotropic receptor kainate type subunit 4 protein-coding 121.5-46 chr17 61858274 61858555 + 0.5 NA intron (NM_032043, intron 3 of 19) AluSp|SINE|Alu 5145 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 118.667-84 chr4 29027989 29028490 + 0.5 NA Intergenic Intergenic 31455 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 187-40 chr6 113509875 113510421 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR -76701 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 135.667-74 chr3 121370028 121370526 + 0.5 NA intron (NM_001348343, intron 21 of 27) AluSx1|SINE|Alu 175711 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 124.333-89 chr6 130964311 130964626 + 0.5 NA intron (NM_001135554, intron 1 of 14) MIRb|SINE|MIR 6015 NM_001350299 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 198.333-27 chr21 23906027 23906686 + 0.5 NA Intergenic Intergenic 415021 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 127.167-96 chr9 27541803 27542234 + 0.5 NA Intergenic Intergenic -12204 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 148.167-30 chr17 54617248 54617640 + 0.5 NA Intergenic AluJb|SINE|Alu -283247 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 140.333-27 chr17 78523916 78524364 + 0.5 NA intron (NM_173628, intron 25 of 80) AluSx|SINE|Alu 39230 NR_102401 100996295 Hs.615304 NR_102401 DNAH17-AS1 - DNAH17 antisense RNA 1 ncRNA 132.667-29 chr14 34083393 34083790 + 0.5 NA Intergenic Intergenic -132517 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 167.5-66 chr9 118327442 118327879 + 0.5 NA Intergenic Intergenic -352011 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 119-23 chr12 39773780 39774037 + 0.5 NA intron (NM_052885, intron 7 of 9) intron (NM_052885, intron 7 of 9) 147725 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 131.667-30 chr14 45823899 45824416 + 0.5 NA Intergenic SATR1|Satellite|Satellite -108555 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 132.833-23 chr15 93084903 93085333 + 0.5 NA intron (NM_020211, intron 1 of 3) intron (NM_020211, intron 1 of 3) 3405 NM_001166287 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule BMP co-receptor a protein-coding 189.667-16 chr14 48181946 48182390 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR -387154 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 187.333-58 chr4 32270181 32270780 + 0.5 NA Intergenic Intergenic -80558 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 138-46 chr18 52827000 52827457 + 0.5 NA intron (NM_005215, intron 2 of 28) intron (NM_005215, intron 2 of 28) -409873 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 168-10 chr12 15358396 15358989 + 0.5 NA intron (NM_030667, intron 1 of 26) MIR3|SINE|MIR 36184 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 196.333-9 chr14 77949501 77950101 + 0.5 NA Intergenic Intergenic 149692 NR_158988 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 127.5-60 chr6 56521223 56521514 + 0.5 NA intron (NM_001144770, intron 61 of 94) intron (NM_001144770, intron 61 of 94) 121521 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 191.5-2 chr1 76099982 76100540 + 0.5 NA intron (NM_001349108, intron 1 of 3) L1ME3B|LINE|L1 25515 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 142.333-71 chr3 121104385 121104889 + 0.5 NA intron (NR_145517, intron 5 of 8) L1PB|LINE|L1 54997 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 149.167-9 chr11 82490081 82490472 + 0.5 NA Intergenic L1PB2|LINE|L1 -86363 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 196.167-6 chr11 16823986 16824650 + 0.5 NA intron (NM_001329630, intron 10 of 26) AluJr|SINE|Alu 85671 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 124.333-33 chr14 72208163 72208722 + 0.5 NA intron (NM_001370288, intron 2 of 16) MLT1K|LTR|ERVL-MaLR 274915 NM_001370284 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 155-28 chr17 64160353 64160718 + 0.5 NA intron (NM_018469, intron 8 of 11) intron (NM_018469, intron 8 of 11) 14196 NR_002995 677842 Hs.405444 NR_002995 ENSG00000277887 SNORA50C ACA62|SNORA76|SNORA76C small nucleolar RNA, H/ACA box 50C snoRNA 225.333-9 chr14 66500104 66500602 + 0.5 NA Intergenic Intergenic -7054 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 121.5-114 chr9 38060996 38061283 + 0.5 NA intron (NM_003028, intron 1 of 5) AluJb|SINE|Alu 8088 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 122.5-57 chr21 43619602 43620056 + 0.5 NA intron (NM_007031, intron 6 of 8) L1M3f|LINE|L1 -9840 NR_106718 102464825 NR_106718 ENSG00000278433 MIR6070 hsa-mir-6070 microRNA 6070 ncRNA 182-42 chr5 111931502 111932010 + 0.5 NA intron (NR_046678, intron 1 of 3) intron (NR_046678, intron 1 of 3) 19248 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 187.833-29 chr6 108254943 108255534 + 0.5 NA intron (NM_001300929, intron 1 of 3) intron (NM_001300929, intron 1 of 3) 5802 NM_152827 8724 Hs.12102 NM_003795 ENSG00000112335 SNX3 Grd19|MCOPS8|SDP3 sorting nexin 3 protein-coding 157-35 chr17 65019419 65019779 + 0.5 NA intron (NM_006572, intron 2 of 3) L1MA2|LINE|L1 36175 NM_001282425 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 160.833-5 chr1 190849530 190850190 + 0.5 NA Intergenic Intergenic 224970 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 121.167-65 chr5 58188329 58188571 + 0.5 NA Intergenic Intergenic -66109 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 125.833-46 chr2 203519662 203519970 + 0.5 NA intron (NM_001329728, intron 1 of 15) intron (NM_001329728, intron 1 of 15) 15485 NM_213589 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 162.5-27 chr2 26425885 26426549 + 0.5 NA intron (NM_145038, intron 4 of 16) L1MB2|LINE|L1 24297 NM_145038 92749 Hs.393714 NM_145038 ENSG00000157856 DRC1 C2orf39|CCDC164|CILD21 dynein regulatory complex subunit 1 protein-coding 119.333-32 chr15 99640734 99641194 + 0.5 NA intron (NM_001365209, intron 3 of 10) L1ME3A|LINE|L1 7986 NM_001130928 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 136.5-78 chr5 155734894 155735220 + 0.5 NA Intergenic L2b|LINE|L2 -591700 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 135.667-15 chr10 56241783 56242148 + 0.5 NA Intergenic Intergenic 119294 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 116.333-42 chr17 34949611 34950068 + 0.5 NA intron (NM_006584, intron 5 of 13) L1MEd|LINE|L1 11621 NM_006584 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 175-41 chr3 173332443 173332890 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -63286 NM_001365924 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 178-40 chr4 76085018 76085512 + 0.5 NA intron (NM_001130017, intron 3 of 9) intron (NM_001130017, intron 3 of 9) 10570 NM_001179 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 131.5-37 chr2 157282928 157283246 + 0.5 NA intron (NM_001329868, intron 2 of 10) intron (NM_001329868, intron 2 of 10) 25382 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 126.833-25 chr12 24940441 24940929 + 0.5 NA intron (NM_001178091, intron 1 of 9) intron (NM_001178091, intron 1 of 9) 8416 NM_001178091 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 154.333-26 chr15 78874137 78874539 + 0.5 NA intron (NM_001265604, intron 1 of 11) intron (NM_001265604, intron 1 of 11) 1349 NM_001265605 10933 Hs.374503 NM_006791 ENSG00000185787 MORF4L1 Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 194.667-8 chr10 86269670 86270223 + 0.5 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) -5158 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 160.5-63 chrX 47033985 47034561 + 0.5 NA intron (NM_001077445, intron 7 of 10) L1ME3|LINE|L1 -44082 NM_001282849 9104 Hs.77854 NM_004683 ENSG00000130988 RGN GNL|HEL-S-41|RC|SMP30 regucalcin protein-coding 128.333-93 chr5 17278069 17278428 + 0.5 NA Intergenic Intergenic 60617 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 127.833-72 chr7 90288442 90288772 + 0.5 NA intron (NM_001039706, intron 15 of 22) Tigger3|DNA|TcMar-Tigger 43433 NM_001039706 79846 Hs.521014 NM_024788 ENSG00000105792 CFAP69 C7orf63|FAP69|SPGF24 cilia and flagella associated protein 69 protein-coding 119.167-25 chr15 61599265 61599675 + 0.5 NA Intergenic L4_B_Mam|LINE|RTE-X -130448 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 174.667-42 chr3 87700447 87700958 + 0.5 NA Intergenic Intergenic -92004 NM_001322208 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 144.333-2 chr1 39797072 39797504 + 0.5 NA Intergenic L1MB3|LINE|L1 8312 NR_135805 101929536 Hs.552820 NR_135805 ENSG00000261798 LOC101929536 - uncharacterized LOC101929536 ncRNA 139.667-60 chr3 35726525 35727056 + 0.5 NA intron (NM_016300, intron 14 of 19) intron (NM_016300, intron 14 of 19) -17686 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 142.5-19 chr13 21619153 21619632 + 0.5 NA Intergenic Intergenic -15222 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 138.667-45 chr2 79281674 79282099 + 0.5 NA Intergenic Intergenic -122133 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 141.167-26 chr15 56482361 56482886 + 0.5 NA Intergenic Intergenic -17486 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 135.5-70 chr7 20552468 20552821 + 0.5 NA Intergenic Intergenic -63023 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 126.167-16 chr11 35328862 35329205 + 0.5 NA intron (NM_001195728, intron 1 of 11) L1MC1|LINE|L1 90525 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 176.5-60 chr6 62560269 62560917 + 0.5 NA Intergenic LTR50|LTR|ERVL -274366 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 115.5-72 chr4 44319643 44319913 + 0.5 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 129031 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 158.5-40 chr2 105861009 105861462 + 0.5 NA intron (NM_001004722, intron 3 of 3) intron (NM_001004722, intron 3 of 3) 9388 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 143.833-51 chr8 59795461 59796007 + 0.5 NA Intergenic L1MA4|LINE|L1 485666 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 207.833-38 chr8 99431825 99432543 + 0.5 NA intron (NM_017890, intron 22 of 61) intron (NM_017890, intron 22 of 61) 104546 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 167.833-9 chr12 113910579 113910933 + 0.5 NA intron (NM_001146698, intron 21 of 24) intron (NM_001146698, intron 21 of 24) 55569 NM_001146699 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 116.167-27 chr17 39371704 39372182 + 0.5 NA intron (NM_001370209, intron 1 of 13) HAL1|LINE|L1 29683 NM_032875 84961 Hs.462946 NM_032875 ENSG00000108306 FBXL20 Fbl2|Fbl20 F-box and leucine rich repeat protein 20 protein-coding 130.667-86 chr6 155295508 155295922 + 0.5 NA intron (NR_146725, intron 4 of 8) MER2|DNA|TcMar-Tigger 18769 NM_016020 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 131-72 chr8 48003709 48004036 + 0.5 NA Intergenic Intergenic -4559 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 114.667-107 chr6 57164008 57164314 + 0.5 NA intron (NM_015555, intron 13 of 13) intron (NM_015555, intron 13 of 13) 8052 NR_110742 101927211 Hs.705718 NR_110742 ZNF451-AS1 - ZNF451 regulatory antisense RNA 1 ncRNA 120-70 chr3 60741893 60742419 + 0.5 NA intron (NR_148921, intron 4 of 4) MIRb|SINE|MIR -124286 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 119.5-60 chr3 18495105 18495468 + 0.5 NA intron (NR_125803, intron 4 of 6) intron (NR_125803, intron 4 of 6) -49694 NM_001322872 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 183.167-26 chr2 86407604 86408035 + 0.5 NA Intergenic AluJb|SINE|Alu -33552 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 118.5-34 chr15 59983622 59984181 + 0.5 NA Intergenic AluSz|SINE|Alu -20410 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 151.667-36 chr2 39506636 39507216 + 0.5 NA intron (NR_037875, intron 3 of 5) MamSINE1|SINE|tRNA-RTE 69510 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 124.667-11 chr10 28076265 28076701 + 0.5 NA intron (NR_134518, intron 11 of 16) intron (NR_134518, intron 11 of 16) -3105 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 136.667-89 chr6 110541514 110542012 + 0.5 NA Intergenic Intergenic -65150 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 150.333-79 chr4 135869987 135870505 + 0.5 NA intron (NR_103763, intron 1 of 2) L1M5|LINE|L1 17847 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 124.833-11 chr10 125418324 125418728 + 0.5 NA Intergenic L1ME4c|LINE|L1 -155845 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 141.667-13 chr11 20908208 20908589 + 0.5 NA intron (NM_201551, intron 5 of 18) L1PA8A|LINE|L1 238812 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 113.5-40 chr16 53042988 53043371 + 0.5 NA non-coding (NR_147075, exon 3 of 3) non-coding (NR_147075, exon 3 of 3) 9694 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 113.333-58 chr2 233989819 233990120 + 0.5 NA intron (NM_024080, intron 21 of 25) intron (NM_024080, intron 21 of 25) -60733 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 128.167-28 chr14 92238344 92238659 + 0.5 NA Intergenic Intergenic -84080 NM_153648 123041 Hs.385530 NM_153646 ENSG00000140090 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 member 4 protein-coding 194.333-46 chr9 36098240 36098762 + 0.5 NA intron (NM_021111, intron 10 of 20) L1ME2|LINE|L1 -38035 NR_104637 152007 Hs.493819 NM_022343 ENSG00000122694 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis related 2 protein-coding 115.5-26 chr12 21921058 21921407 + 0.5 NA intron (NM_005691, intron 3 of 37) L1MA2|LINE|L1 15462 NM_005691 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 147.5-77 chr7 91730027 91730456 + 0.5 NA Intergenic L4_B_Mam|LINE|RTE-X 150461 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 117-112 chr7 54421887 54422217 + 0.5 NA Intergenic Intergenic 91355 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 191.167-29 chr6 70522953 70523433 + 0.5 NA intron (NM_001331004, intron 13 of 20) L1ME2|LINE|L1 -43737 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 185.333-14 chr12 111275147 111275896 + 0.5 NA intron (NM_015267, intron 4 of 21) intron (NM_015267, intron 4 of 21) -28621 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 129-90 chr7 3370074 3370397 + 0.5 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 68983 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 159.833-48 chr8 42418661 42419233 + 0.5 NA intron (NM_006749, intron 10 of 10) AluY|SINE|Alu 27067 NM_005662 7419 Hs.699301 NM_005662 ENSG00000078668 VDAC3 HD-VDAC3|VDAC-3 voltage dependent anion channel 3 protein-coding 132.833-28 chr18 68179233 68179592 + 0.5 NA Intergenic Intergenic -364590 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 145.167-77 chr8 129206080 129206448 + 0.5 NA Intergenic Intergenic 34976 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 148.5-31 chr17 61240792 61241362 + 0.5 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 126627 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 176.833-16 chr2 113040837 113041313 + 0.5 NA intron (NM_173178, intron 1 of 4) AluJb|SINE|Alu 11792 NM_014438 27177 Hs.278909 NM_014438 ENSG00000136696 IL36B FIL1|FIL1-(ETA)|FIL1H|FILI-(ETA)|IL-1F8|IL-1H2|IL1-ETA|IL1F8|IL1H2 interleukin 36 beta protein-coding 122.5-13 chr10 63883046 63883352 + 0.5 NA Intergenic Intergenic -361309 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 275-9 chr4 91350355 91351217 + 0.5 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 926516 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 120.333-39 chr13 39641269 39641635 + 0.5 NA Intergenic AluJr|SINE|Alu -14175 NR_026745 57511 Hs.507805 NM_020751 ENSG00000133103 COG6 CDG2L|COD2|SHNS component of oligomeric golgi complex 6 protein-coding 133.833-58 chr4 181484718 181485102 + 0.5 NA Intergenic Intergenic -219881 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 114.333-43 chr15 57161938 57162307 + 0.5 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -57308 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 175.667-9 chr10 56939151 56939588 + 0.5 NA Intergenic Intergenic 365190 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 138.833-11 chr10 91123563 91124139 + 0.5 NA Intergenic Intergenic 29229 NR_002779 119369 Hs.441287 NR_002779 NUDT9P1 C10orf98|bA56M3.1 nudix hydrolase 9 pseudogene 1 pseudo 128.333-85 chr3 187295342 187295773 + 0.5 NA intron (NR_135551, intron 1 of 1) intron (NR_135551, intron 1 of 1) -3535 NM_001879 5648 Hs.89983 NM_001879 ENSG00000127241 MASP1 3MC1|CRARF|CRARF1|MAP1|MASP|MASP3|MAp44|PRSS5|RaRF mannan binding lectin serine peptidase 1 protein-coding 150.5-82 chr8 124993913 124994557 + 0.5 NA Intergenic AluJr|SINE|Alu 3963 NR_134457 105375744 Hs.575534 NR_134457 ENSG00000253513 LOC105375744 - uncharacterized LOC105375744 ncRNA 135.167-88 chr7 95517340 95517686 + 0.5 NA intron (NM_145872, intron 2 of 2) intron (NM_145872, intron 2 of 2) 31570 NM_016116 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 163-17 chr14 27275963 27276339 + 0.5 NA Intergenic L2a|LINE|L2 -336437 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 130-65 chr20 62607894 62608204 + 0.5 NA Intergenic Intergenic -34454 NM_016354 28231 Hs.235782 NM_016354 ENSG00000101187 SLCO4A1 OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12 solute carrier organic anion transporter family member 4A1 protein-coding 123-45 chr2 120094791 120095186 + 0.5 NA intron (NM_001330307, intron 14 of 16) L1M4|LINE|L1 81911 NM_001330307 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 126.667-82 chr6 66753982 66754307 + 0.5 NA Intergenic Intergenic 966265 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 128.333-54 chr19 28837038 28837665 + 0.5 NA Intergenic AluSg|SINE|Alu -109657 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 145-81 chr7 54076753 54077246 + 0.5 NA Intergenic Intergenic -253698 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 125.5-76 chr7 96919767 96920073 + 0.5 NA Intergenic L1M5|LINE|L1 -85633 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 121.5-67 chr3 81042492 81042894 + 0.5 NA intron (NR_132411, intron 1 of 1) intron (NR_132411, intron 1 of 1) 48825 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 163.833-38 chr20 38708865 38709415 + 0.5 NA Intergenic AluSq2|SINE|Alu -15346 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 175.5-45 chr3 177931940 177932512 + 0.5 NA Intergenic Intergenic 115361 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 151-25 chr15 48408542 48408907 + 0.5 NA 3' UTR (NM_000138, exon 66 of 66) 3' UTR (NM_000138, exon 66 of 66) 76527 NM_001948 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 161-9 chr10 108464140 108464483 + 0.5 NA Intergenic Intergenic -395018 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 198.667 chr1 49272148 49272842 + 0.5 NA intron (NR_136623, intron 2 of 12) LTR49-int|LTR|ERV1 15084 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 117-97 chr6 41112008 41112378 + 0.5 NA intron (NR_026938, intron 6 of 22) AluJo|SINE|Alu 11159 NR_026938 221442 Hs.374076 NM_001010871 ENSG00000161912 ADCY10P1 - ADCY10 pseudogene 1 pseudo 120.667-29 chr12 78643560 78644083 + 0.5 NA Intergenic Intergenic -220161 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 143-52 chr3 192698915 192699484 + 0.5 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 28342 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 135.667-45 chr18 13839076 13839574 + 0.5 NA Intergenic Intergenic 15176 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 170.167-40 chr3 79804384 79804761 + 0.5 NA Intergenic Intergenic -36574 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 126.333-72 chr22 40436383 40436653 + 0.5 NA intron (NM_020831, intron 4 of 14) intron (NM_020831, intron 4 of 14) 26922 NM_001282660 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 135.333-72 chr6 134607214 134607586 + 0.5 NA Intergenic Intergenic -67395 NR_125856 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 120.333-23 chr10 124246417 124246822 + 0.5 NA Intergenic AluSz|SINE|Alu -153021 NM_001270764 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 156.667-13 chr10 22058012 22058388 + 0.5 NA Intergenic Intergenic -54470 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 191.5-38 chr4 88979886 88980564 + 0.5 NA intron (NM_014883, intron 4 of 23) L1ME4a|LINE|L1 76960 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 156-43 chr2 125367708 125368166 + 0.5 NA Intergenic Intergenic 750048 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 144.667-102 chr9 81559201 81559625 + 0.5 NA Intergenic Intergenic 130122 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 122.833-5 chr1 68977958 68978418 + 0.5 NA Intergenic MER5B|DNA|hAT-Charlie -77710 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 150.167-59 chr6 81919633 81920188 + 0.5 NA intron (NR_149135, intron 3 of 3) MIR|SINE|MIR 13570 NR_149136 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 130-30 chr13 76099529 76099987 + 0.5 NA Intergenic Tigger17a|DNA|TcMar-Tigger -164626 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 206.5-18 chr3 117814141 117814950 + 0.5 NA Intergenic Intergenic -123620 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 156.5-56 chr22 44483092 44483501 + 0.5 NA Intergenic AluSq2|SINE|Alu 14937 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 190-42 chr3 133046271 133046743 + 0.5 NA intron (NM_001136469, intron 2 of 5) intron (NM_001136469, intron 2 of 5) 8219 NM_023943 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 172.667-12 chr10 72048386 72048843 + 0.5 NA Intergenic Intergenic 39937 NM_001244950 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 137-65 chr20 33537551 33537914 + 0.5 NA intron (NM_001032999, intron 1 of 10) L1ME1|LINE|L1 -24633 NM_001039709 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 149.667-76 chr8 111481989 111482454 + 0.5 NA Intergenic Intergenic 105582 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 127.5-22 chr14 60005061 60005520 + 0.5 NA intron (NR_075071, intron 21 of 32) MER5A|DNA|hAT-Charlie 85577 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 157.833-49 chr4 75312879 75313310 + 0.5 NA Intergenic L2|LINE|L2 -40982 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 141.333-67 chr4 46773551 46773999 + 0.5 NA intron (NM_130902, intron 2 of 2) Charlie8|DNA|hAT-Charlie 135470 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 137.833-19 chr2 40557686 40558188 + 0.5 NA Intergenic Intergenic -45502 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 188-66 chr8 129501457 129501937 + 0.5 NA intron (NR_130917, intron 1 of 3) MLT1A|LTR|ERVL-MaLR -17555 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 147.667-12 chr10 51570309 51570854 + 0.5 NA intron (NM_001098512, intron 3 of 17) Tigger2a|DNA|TcMar-Tigger 129014 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 174.333-41 chr4 160296675 160297336 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -519221 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 141.167-33 chr18 1683291 1683880 + 0.5 NA Intergenic L1MA7|LINE|L1 -323956 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 125.833-30 chr17 72087803 72088123 + 0.5 NA intron (NR_103738, intron 2 of 6) MLT2C1|LTR|ERVL 15630 NR_110827 101928205 Hs.620808 NR_110827 ENSG00000226101 LINC02097 - long intergenic non-protein coding RNA 2097 ncRNA 113.667-95 chr4 135485886 135486132 + 0.5 NA Intergenic L1MB7|LINE|L1 -362450 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 116.667-72 chr3 31407683 31408232 + 0.5 NA Intergenic Intergenic -124968 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 141.667-111 chr8 134217571 134217889 + 0.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 331234 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 172.333-12 chr10 79478355 79478961 + 0.5 NA Intergenic Intergenic 32324 NR_136625 729815 Hs.564060 NR_136624 ENSG00000235705 LOC729815 - uncharacterized LOC729815 ncRNA 216.333-29 chr3 26637784 26638655 + 0.5 NA intron (NM_001317810, intron 2 of 2) intron (NM_001317810, intron 2 of 2) 13552 NM_001317810 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 118-11 chr1 214355153 214355530 + 0.5 NA 3' UTR (NM_005401, exon 19 of 19) 3' UTR (NM_005401, exon 19 of 19) 74182 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 140.5-35 chr2 19399971 19400329 + 0.5 NA Intergenic L1MC|LINE|L1 -41527 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 150.667-52 chr2 153627342 153627779 + 0.5 NA Intergenic Intergenic -148798 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 146.667-24 chr12 102459455 102459816 + 0.5 NA intron (NM_000618, intron 2 of 3) intron (NM_000618, intron 2 of 3) 18915 NM_001111284 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 123.833-48 chr5 86116457 86116940 + 0.5 NA Intergenic Intergenic -165746 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 161.667-67 chr5 40852107 40852685 + 0.5 NA exon (NM_032587, exon 3 of 3) exon (NM_032587, exon 3 of 3) 11029 NM_032587 84674 Hs.200242 NM_032587 ENSG00000132357 CARD6 CINCIN1 caspase recruitment domain family member 6 protein-coding 120.167-25 chr16 23841729 23842165 + 0.5 NA intron (NM_002738, intron 2 of 16) AluSx|SINE|Alu 5964 NM_002738 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 169.667-73 chr8 106389677 106390161 + 0.5 NA intron (NM_018002, intron 2 of 15) AluSx1|SINE|Alu -58005 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 137.333-49 chr2 82521803 82522134 + 0.5 NA Intergenic Intergenic -334835 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 147.667-65 chr7 53119603 53120126 + 0.5 NA Intergenic Zaphod|DNA|hAT-Tip100 84231 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 138.5-16 chr11 84700920 84701276 + 0.5 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 19844 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 119.833-60 chr3 179276672 179276992 + 0.5 NA Intergenic Intergenic -9782 NM_171828 27094 Hs.591285 NM_014407 ENSG00000171121 KCNMB3 BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3 potassium calcium-activated channel subfamily M regulatory beta subunit 3 protein-coding 117-66 chr21 15565855 15566126 + 0.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -163944 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 173.667-33 chr20 53968457 53969090 + 0.5 NA intron (NM_001366295, intron 7 of 10) MER102c|DNA|hAT-Charlie 90247 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 151-27 chr15 80548421 80548909 + 0.5 NA intron (NM_014862, intron 8 of 18) L1MC4a|LINE|L1 14279 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 113.167-85 chrX 88144340 88144682 + 0.5 NA Intergenic Intergenic -602714 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 152.167-45 chr4 30900898 30901316 + 0.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 180738 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 157.333-73 chr8 111416944 111417301 + 0.5 NA intron (NR_146282, intron 2 of 3) MLT2B1|LTR|ERVL 40483 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 164.833-10 chr10 118663611 118664026 + 0.5 NA Intergenic Intergenic -68170 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 132.5-67 chr4 93961628 93962133 + 0.5 NA Intergenic MIR|SINE|MIR 133127 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 114.667-58 chr2 200574057 200574519 + 0.5 NA intron (NM_001160033, intron 7 of 8) intron (NM_001160033, intron 7 of 8) -11726 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 135.5-61 chr5 15749273 15749611 + 0.5 NA intron (NM_001278317, intron 2 of 3) AluY|SINE|Alu -134440 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 118.333-51 chr2 109729662 109729980 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR -62937 NM_032260 84220 Hs.469630 NM_005054 ENSG00000015568 RGPD5 BS-63|BS63|HEL161|RGP5 RANBP2 like and GRIP domain containing 5 protein-coding 130.167-43 chr21 37585348 37585853 + 0.5 NA Intergenic L1ME3A|LINE|L1 165301 NM_130438 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 154.667-3 chr1 151888939 151889494 + 0.5 NA exon (NM_053055, exon 3 of 6) exon (NM_053055, exon 3 of 6) 20295 NM_053055 117145 Hs.164070 NM_053055 ENSG00000159445 THEM4 CTMP thioesterase superfamily member 4 protein-coding 170.833-8 chr12 117520610 117521042 + 0.5 NA intron (NM_173598, intron 14 of 19) intron (NM_173598, intron 14 of 19) -159024 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 132.333-21 chr11 68247138 68247589 + 0.5 NA Intergenic MER30|DNA|hAT-Charlie 24610 NM_022338 53838 Hs.303025 NM_022338 ENSG00000171067 C11orf24 DM4E3 chromosome 11 open reading frame 24 protein-coding 117.833-3 chr1 235225269 235225599 + 0.5 NA intron (NR_135074, intron 11 of 24) intron (NR_135074, intron 11 of 24) -35318 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 131.333-98 chr8 67611705 67612148 + 0.5 NA intron (NM_020361, intron 2 of 10) LTR41C|LTR|ERVL 134434 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 141.667-68 chr3 153179071 153179455 + 0.5 NA Intergenic AluSx|SINE|Alu 17037 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 124-67 chr4 87824137 87824385 + 0.5 NA intron (NM_001184694, intron 1 of 3) intron (NM_001184694, intron 1 of 3) 2863 NM_001184694 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 121.667-78 chr5 90069765 90070079 + 0.5 NA Intergenic L1PA7|LINE|L1 -53202 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 142.167-52 chr21 23041276 23041660 + 0.5 NA Intergenic Intergenic -37816 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 159.333-72 chr9 114222962 114223387 + 0.5 NA intron (NM_032888, intron 14 of 60) intron (NM_032888, intron 14 of 60) 13740 NR_030255 619556 NR_030255 ENSG00000207726 MIR455 MIRN455|hsa-mir-455|mir-455 microRNA 455 ncRNA 159.667-15 chr10 29902060 29902696 + 0.5 NA Intergenic Intergenic 157208 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 180-33 chr3 162416985 162417510 + 0.5 NA Intergenic (ATAA)n|Simple_repeat|Simple_repeat 886054 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 118.167-52 chr4 103675065 103675495 + 0.5 NA intron (NM_001059, intron 1 of 4) intron (NM_001059, intron 1 of 4) 44705 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 151.667-11 chr10 98049634 98050065 + 0.5 NA Intergenic L1ME1|LINE|L1 -19021 NM_001206528 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 147.167-66 chrX 93950023 93950463 + 0.5 NA Intergenic MER4A1|LTR|ERV1 276037 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 204.833-16 chr2 228268769 228269178 + 0.5 NA Intergenic Intergenic -87286 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 115.167-64 chr21 25510183 25510723 + 0.5 NA Intergenic Intergenic -51692 NR_001458 114614 Hs.697120 NR_001458 ENSG00000234883 MIR155HG BIC|MIRHG2|NCRNA00172 MIR155 host gene ncRNA 152.5-61 chr7 79661665 79662085 + 0.5 NA Intergenic Intergenic 207915 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 121-3 chr1 98015968 98016289 + 0.5 NA intron (NR_046105, intron 3 of 4) Tigger12c|DNA|TcMar-Tigger 29223 NR_039604 100616452 NR_039604 ENSG00000284247 MIR2682 mir-2682 microRNA 2682 ncRNA 139.833-2 chr1 201757595 201757940 + 0.5 NA intron (NM_001167738, intron 1 of 26) intron (NM_001167738, intron 1 of 26) 17867 NM_001167738 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 149.833-10 chr17 56045636 56046023 + 0.5 NA Intergenic Intergenic -107646 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 174.833-23 chr2 150073436 150073827 + 0.5 NA Intergenic L1PA16|LINE|L1 183376 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 146.167-30 chr2 23053102 23053722 + 0.5 NA Intergenic Intergenic -331767 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 166.167-9 chr12 13062145 13062517 + 0.5 NA intron (NM_020853, intron 4 of 12) intron (NM_020853, intron 4 of 12) 17950 NM_020853 57613 Hs.132660 NM_020853 ENSG00000084444 FAM234B KIAA1467 family with sequence similarity 234 member B protein-coding 123.333-45 chr17 2887908 2888236 + 0.5 NA intron (NM_001330058, intron 2 of 24) intron (NM_001330058, intron 2 of 24) 77823 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 197-27 chr2 188950448 188950976 + 0.5 NA Intergenic MER77B|LTR|ERVL -23661 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 115.833-71 chr7 15812166 15812424 + 0.5 NA Intergenic Charlie2b|DNA|hAT-Charlie 123917 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 126.333-96 chr6 135466972 135467425 + 0.5 NA intron (NM_017651, intron 5 of 27) intron (NM_017651, intron 5 of 27) 30542 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 136.667-86 chr5 179827233 179827665 + 0.5 NA intron (NM_003900, intron 5 of 7).2 AluY|SINE|Alu 6544 NM_003900 8878 Hs.587290 NM_003900 ENSG00000161011 SQSTM1 A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B sequestosome 1 protein-coding 123.333-77 chr3 162306623 162306917 + 0.5 NA Intergenic L1M3e|LINE|L1 809962 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 147-92 chr9 105173241 105173662 + 0.5 NA Intergenic Intergenic -71154 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 115.667-118 chr8 125048057 125048399 + 0.5 NA intron (NM_014846, intron 19 of 28) intron (NM_014846, intron 19 of 28) 43564 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 196.167-32 chr7 13297020 13297706 + 0.5 NA Intergenic L2|LINE|L2 609730 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 193.167-36 chr8 36709285 36709783 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -74840 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 158.833-60 chr7 49481720 49482329 + 0.5 NA Intergenic L1PA16|LINE|L1 -291614 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 200.5-3 chr10 41736116 41736608 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 631683 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 174-12 chr11 84449177 84449653 + 0.5 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -132076 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 156.833-57 chr8 48769787 48770375 + 0.5 NA Intergenic Intergenic -34770 NM_001142857 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 190.667-46 chr5 63968184 63968885 + 0.5 NA Intergenic Intergenic -6242 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 125.667-92 chr5 10378984 10379328 + 0.5 NA intron (NM_001270660, intron 3 of 24) L1MC5|LINE|L1 -23208 NR_162106 113218502 NR_162106 MIR10397 - microRNA 10397 ncRNA 147.333-62 chr4 34338046 34338570 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -68561 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 163.5-31 chr2 4199345 4199966 + 0.5 NA Intergenic Intergenic 225494 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 143.833-18 chr2 113089211 113089751 + 0.5 NA Intergenic Intergenic 17163 NM_032556 84639 Hs.306974 NM_032556 ENSG00000136697 IL1F10 FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family member 10 protein-coding 126.167-58 chr3 154334039 154334487 + 0.5 NA TTS (NM_001038705) TTS (NM_001038705) -9766 NM_001114397 170506 Hs.446270 NM_020865 ENSG00000174953 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH-box helicase 36 protein-coding 115.167-13 chr1 202913329 202913616 + 0.5 NA intron (NM_001303109, intron 4 of 9) L2c|LINE|L2 13762 NM_001303109 59349 Hs.706793 NM_021633 ENSG00000117153 KLHL12 C3IP1|DKIR kelch like family member 12 protein-coding 136.667-110 chr8 135862009 135862524 + 0.5 NA Intergenic Intergenic 404810 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 144.667-10 chr1 198871297 198871592 + 0.5 NA intron (NR_040073, intron 2 of 2) L1PA5|LINE|L1 -12291 NR_029626 406995 NR_029626 ENSG00000207759 MIR181A1 MIR213|MIRN181A1|MIRN213|hsa-mir-181a-1|mir-181a-1|mir-213 microRNA 181a-1 ncRNA 127.333-57 chr2 198563151 198563618 + 0.5 NA Intergenic L1PA15|LINE|L1 -188287 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 179.667-43 chr5 156761632 156762263 + 0.5 NA 3' UTR (NM_000337, exon 9 of 9) 3' UTR (NM_000337, exon 9 of 9) -88348 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 149.833-66 chr9 93693132 93693536 + 0.5 NA Intergenic L1MD2|LINE|L1 98493 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 150.667-90 chr8 51054277 51054787 + 0.5 NA Intergenic Intergenic 754913 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 144.167-63 chr5 143142180 143142802 + 0.5 NA intron (NR_146198, intron 19 of 22) intron (NR_146198, intron 19 of 22) -50009 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 205.5-33 chr4 105873237 105873690 + 0.5 NA Intergenic Intergenic -22008 NM_001033047 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 161.333-41 chr2 119223337 119223702 + 0.5 NA promoter-TSS (NM_182915) promoter-TSS (NM_182915) -315 NM_018234 55240 Hs.647822 NM_018234 ENSG00000115107 STEAP3 AHMIO2|STMP3|TSAP6|dudlin-2|dudulin-2|pHyde STEAP3 metalloreductase protein-coding 141.167-70 chr7 140427373 140427938 + 0.5 NA 3' UTR (NM_001008749, exon 4 of 4) 3' UTR (NM_001008749, exon 4 of 4) 23597 NM_001008749 401409 Hs.583545 NM_001008749 ENSG00000146955 RAB19 RAB19B RAB19, member RAS oncogene family protein-coding 146.833-34 chr20 36658388 36658932 + 0.5 NA intron (NM_032013, intron 13 of 15) intron (NM_032013, intron 13 of 15) -12464 NM_032214 84174 Hs.713578 NM_032214 ENSG00000101082 SLA2 C20orf156|MARS|SLAP-2|SLAP2 Src like adaptor 2 protein-coding 115.5-57 chr20 59606206 59606662 + 0.5 NA intron (NM_080672, intron 1 of 12) intron (NM_080672, intron 1 of 12) 1894 NM_080672 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 126.5-79 chr7 79827040 79827492 + 0.5 NA Intergenic L1ME1|LINE|L1 -307565 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 142-12 chr10 25267482 25267979 + 0.5 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -91454 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 225.5-16 chr14 33161821 33162536 + 0.5 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 223299 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 205.5-17 chr18 39143804 39144472 + 0.5 NA Intergenic Intergenic 478037 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 152.333-48 chr4 158922820 158923242 + 0.5 NA intron (NM_152543, intron 3 of 4) L1MB7|LINE|L1 112198 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 123.5-29 chr14 73888355 73888931 + 0.5 NA intron (NR_040251, intron 1 of 11) L1MB8|LINE|L1 1784 NM_021188 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 185.833-29 chr5 25498335 25498791 + 0.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR 307610 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 116.833-27 chr2 53955013 53955423 + 0.5 NA intron (NM_014614, intron 1 of 46) intron (NM_014614, intron 1 of 46) 15775 NM_014614 23198 Hs.413801 NM_014614 ENSG00000068878 PSME4 PA200 proteasome activator subunit 4 protein-coding 195.333-56 chr8 31029440 31029894 + 0.5 NA intron (NM_001323312, intron 2 of 2) intron (NM_001323312, intron 2 of 2) 3134 NM_013357 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 136.833-71 chr7 100061899 100062473 + 0.5 NA intron (NM_145914, intron 3 of 3) intron (NM_145914, intron 3 of 3) 12392 NM_001362779 7589 Hs.632294 NM_145914 ENSG00000166529 ZSCAN21 NY-REN-21|ZNF38|Zipro1 zinc finger and SCAN domain containing 21 protein-coding 237.5-14 chr21 27510840 27511712 + 0.5 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -211103 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 134-74 chr3 158892907 158893215 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 91007 NM_022736 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 122.333-29 chr14 26933633 26934137 + 0.5 NA Intergenic Intergenic 25243 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 154.833-57 chr8 80025597 80025919 + 0.5 NA intron (NM_014018, intron 1 of 2) MIR|SINE|MIR 4501 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 125.5-14 chr12 25966197 25966598 + 0.5 NA intron (NM_001164748, intron 1 of 4) AluJr4|SINE|Alu -6955 NR_038228 100506451 Hs.560092 NR_038227 RASSF8-AS1 - RASSF8 antisense RNA 1 ncRNA 119.667-87 chr6 40550939 40551182 + 0.5 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 36304 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 121-59 chr3 38892264 38892749 + 0.5 NA intron (NM_014139, intron 15 of 25) L1M4b|LINE|L1 58055 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 123.833-79 chr9 123773502 123773883 + 0.5 NA intron (NM_001352965, intron 1 of 20) intron (NM_001352965, intron 1 of 20) 156434 NM_024820 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 143.333-61 chr4 39742962 39743347 + 0.5 NA intron (NM_005339, intron 2 of 6) intron (NM_005339, intron 2 of 6) 45018 NM_005339 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 131.833-25 chr17 32572263 32572602 + 0.5 NA intron (NM_015194, intron 21 of 21) L2a|LINE|L2 85439 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 136.167-54 chr3 187401627 187402184 + 0.5 NA Intergenic L1M5|LINE|L1 33520 NM_022147 64108 Hs.43388 NM_022147 ENSG00000136514 RTP4 IFRG28|Z3CXXC4 receptor transporter protein 4 protein-coding 119.167-16 chr12 68269976 68270510 + 0.5 NA Intergenic L2a|LINE|L2 -16639 NM_020525 50616 Hs.287369 NM_020525 ENSG00000127318 IL22 IL-21|IL-22|IL-D110|IL-TIF|ILTIF|TIFIL-23|TIFa|zcyto18 interleukin 22 protein-coding 150.333-73 chr4 34378360 34378758 + 0.5 NA Intergenic Intergenic -108812 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 122.667-9 chr10 74834909 74835262 + 0.5 NA intron (NM_001370142, intron 1 of 16) L2c|LINE|L2 8485 NM_012330 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 202.167-30 chr6 109666307 109667133 + 0.5 NA intron (NR_138057, intron 5 of 11) intron (NR_138057, intron 5 of 11) 24492 NM_145025 221264 Hs.205144 NM_145025 ENSG00000155085 AK9 AK 9|AKD1|AKD2|C6orf199|C6orf224|dJ70A9.1 adenylate kinase 9 protein-coding 224.333-17 chr2 60756268 60756907 + 0.5 NA intron (NM_022894, intron 1 of 21) CpG 319 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 129.5-72 chr5 173109503 173109992 + 0.5 NA intron (NM_153607, intron 5 of 8) intron (NM_153607, intron 5 of 8) -34784 NM_013979 662 Hs.145726 NM_001205 ENSG00000113734 BNIP1 NIP1|SEC20|TRG-8 BCL2 interacting protein 1 protein-coding 129.167-43 chr2 183614752 183615044 + 0.5 NA Intergenic Intergenic 490455 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 119.167-78 chr5 105403181 105403555 + 0.5 NA Intergenic Intergenic 303894 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 144.167-6 chr1 169415964 169416574 + 0.5 NA intron (NM_001300969, intron 4 of 5) L1P3b|LINE|L1 11205 NM_021179 57821 Hs.567557 NM_021179 ENSG00000117477 CCDC181 C1orf114 coiled-coil domain containing 181 protein-coding 210.833-4 chr10 83011575 83012268 + 0.5 NA Intergenic Intergenic 665168 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 164.5-32 chr2 55746035 55746401 + 0.5 NA Intergenic L1ME3B|LINE|L1 -52374 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 131.667-34 chr14 61205473 61205851 + 0.5 NA Intergenic LTR16E1|LTR|ERVL 75676 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 144.833-10 chr10 76835616 76836013 + 0.5 NA Intergenic AluY|SINE|Alu -52230 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 153.333-80 chr8 42951026 42951376 + 0.5 NA intron (NM_032410, intron 6 of 21) AluSx|SINE|Alu 54223 NM_032410 84376 Hs.162852 NM_032410 ENSG00000168172 HOOK3 HK3 hook microtubule tethering protein 3 protein-coding 140.833-13 chr11 79445353 79445671 + 0.5 NA Intergenic Intergenic -4482 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 114.333-35 chr14 34162049 34162446 + 0.5 NA Intergenic MIR|SINE|MIR -211173 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 169.667-45 chr20 11285136 11285681 + 0.5 NA Intergenic Intergenic -12025 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 145.333-2 chr1 67426516 67426877 + 0.5 NA intron (NM_001018068, intron 1 of 7) intron (NM_001018068, intron 1 of 7) 3706 NM_001018068 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 135.333-67 chr6 46928261 46928623 + 0.5 NA intron (NM_015234, intron 1 of 20) intron (NM_015234, intron 1 of 20) -6504 NM_001098518 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 117.5-29 chr2 156453202 156453722 + 0.5 NA intron (NM_000408, intron 1 of 16) L2b|LINE|L2 17083 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 151-15 chr12 94246045 94246536 + 0.5 NA intron (NM_005761, intron 12 of 30) intron (NM_005761, intron 12 of 30) -16231 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 162.5-36 chr2 201446486 201446862 + 0.5 NA intron (NM_015049, intron 1 of 15) MIR|SINE|MIR 4784 NM_015049 66008 Hs.152774 NM_015049 ENSG00000115993 TRAK2 ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98 trafficking kinesin protein 2 protein-coding 135.833-12 chr12 114453987 114454302 + 0.5 NA Intergenic AluJr|SINE|Alu -45702 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 120.333-30 chr12 5008794 5009089 + 0.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR -34938 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 143.5-32 chr18 8262384 8262738 + 0.5 NA intron (NM_002845, intron 17 of 30) intron (NM_002845, intron 17 of 30) 104473 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 130-81 chr5 28005486 28005817 + 0.5 NA Intergenic L1P1|LINE|L1 282014 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 226.833-3 chr10 31807650 31808168 + 0.5 NA intron (NM_001270696, intron 17 of 17) intron (NM_001270696, intron 17 of 17) 101017 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 148-38 chr19 18469007 18469409 + 0.5 NA intron (NM_006532, intron 2 of 11) intron (NM_006532, intron 2 of 11) -31075 NR_045573 51477 Hs.405873 NM_016368 ENSG00000105655 ISYNA1 INO1|INOS|IPS|IPS 1|IPS-1 inositol-3-phosphate synthase 1 protein-coding 132-79 chr5 174748054 174748545 + 0.5 NA Intergenic L1MC5|LINE|L1 -3435 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 168.333-4 chr10 44499362 44499840 + 0.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -114504 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 162.5-47 chr3 83113128 83113568 + 0.5 NA Intergenic Intergenic 1127206 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 121.833-17 chr14 52894369 52894707 + 0.5 NA intron (NM_006832, intron 3 of 14) L1ME1|LINE|L1 56512 NM_006832 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 144.5-77 chr5 137813862 137814174 + 0.5 NA Intergenic L1MA8|LINE|L1 12825 NR_002713 4888 Hs.643466 NR_002713 ENSG00000226306 NPY6R NPY1RL|NPY6RP|PP2|Y2B neuropeptide Y receptor Y6 (pseudogene) pseudo 114.667-128 chr8 117955791 117956130 + 0.5 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -35047 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 127.333-20 chr11 101581062 101581405 + 0.5 NA intron (NM_004621, intron 1 of 12) intron (NM_004621, intron 1 of 12) 2774 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 140.667-97 chrX 130269955 130270252 + 0.5 NA Intergenic AluSp|SINE|Alu -1204 NM_017666 55609 Hs.308418 NM_017666 ENSG00000056277 ZNF280C SUHW3|ZNF633|ZPET zinc finger protein 280C protein-coding 129.333-58 chr22 28397479 28398026 + 0.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -62117 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 137-53 chr2 37877350 37877800 + 0.5 NA Intergenic Intergenic -1712 NR_110012 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 134.333-79 chr3 186551085 186551395 + 0.5 NA exon (NM_018138, exon 7 of 8) exon (NM_018138, exon 7 of 8) -6860 NM_017541 1427 Hs.376209 NM_017541 ENSG00000213139 CRYGS CRYG8|CTRCT20 crystallin gamma S protein-coding 122-77 chr6 98564587 98565186 + 0.5 NA Intergenic AluY|SINE|Alu 266814 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 168.667-2 chr1 102010559 102010993 + 0.5 NA Intergenic MER39|LTR|ERV1 -13542 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 141.167-18 chr12 17252317 17252694 + 0.5 NA Intergenic Intergenic 263758 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 123.667-5 chr1 115147524 115147771 + 0.5 NA Intergenic L1PB4|LINE|L1 -58144 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 141.333 chr1 27179526 27180086 + 0.5 NA Intergenic MER51-int|LTR|ERV1 -24681 NM_003047 6548 Hs.469116 NM_003047 ENSG00000090020 SLC9A1 APNH|LIKNS|NHE-1|NHE1|PPP1R143 solute carrier family 9 member A1 protein-coding 127.167-6 chr1 171422848 171423198 + 0.5 NA Intergenic AluSq2|SINE|Alu -62507 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 127.667-77 chr6 7291244 7291643 + 0.5 NA intron (NR_120448, intron 6 of 6) intron (NR_120448, intron 6 of 6) 21756 NR_120448 6745 Hs.114033 NM_003144 ENSG00000124783 SSR1 TRAPA signal sequence receptor subunit 1 protein-coding 169.167-14 chr14 55948765 55949203 + 0.5 NA Intergenic L1ME4c|LINE|L1 -152310 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 117.833-60 chr4 155142680 155143048 + 0.5 NA Intergenic L2c|LINE|L2 -65772 NM_000910 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 181.667-33 chr20 34170648 34171055 + 0.5 NA Intergenic Intergenic -58608 NM_001316364 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 161.667-60 chr4 41870176 41870795 + 0.5 NA Intergenic Intergenic 12126 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 199.667-60 chr7 62753254 62753902 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 550478 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 123.5-54 chr3 68149014 68149367 + 0.5 NA intron (NM_001252216, intron 2 of 4) MIRb|SINE|MIR 144943 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 120.167-22 chr15 68300017 68300344 + 0.5 NA 3' UTR (NM_001004439, exon 30 of 30) 3' UTR (NM_001004439, exon 30 of 30) 22435 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 184.167-23 chr15 67251578 67252063 + 0.5 NA intron (NM_001271885, intron 1 of 9) intron (NM_001271885, intron 1 of 9) 2841 NM_024666 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 114.167-74 chr4 188988219 188988528 + 0.5 NA Intergenic Intergenic 211716 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 201.5-8 chr13 43591594 43592261 + 0.5 NA intron (NM_001347965, intron 1 of 15) intron (NM_001347965, intron 1 of 15) 37550 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 182.333-27 chr18 56031014 56031513 + 0.5 NA intron (NR_148972, intron 6 of 8) intron (NR_148972, intron 6 of 8) -11015 NR_146511 102724698 NR_146510 ENSG00000267057 LINC01905 - long intergenic non-protein coding RNA 1905 ncRNA 118.333-71 chr3 47042092 47042497 + 0.5 NA intron (NR_146158, intron 18 of 21) AluSx|SINE|Alu 30752 NR_024046 100129354 Hs.201522 NR_024046 NRADDP - neurotrophin receptor associated death domain, pseudogene pseudo 139.5-75 chr8 100966247 100966675 + 0.5 NA Intergenic AluSc|SINE|Alu -13079 NM_003406 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 139-42 chr3 113941506 113942093 + 0.5 NA intron (NM_001172105, intron 12 of 12) AluSx|SINE|Alu -6102 NM_001363952 254887 Hs.21902 NM_173570 ENSG00000184307 ZDHHC23 DHHC-23|NIDD zinc finger DHHC-type containing 23 protein-coding 200.167-13 chr12 120196590 120197374 + 0.5 NA intron (NM_001002, intron 7 of 7) intron (NM_001002, intron 7 of 7) -2267 NM_006836 10985 Hs.298716 NM_006836 ENSG00000089154 GCN1 GCN1L|GCN1L1|PRIC295 GCN1 activator of EIF2AK4 protein-coding 120.333-27 chr11 77389895 77390230 + 0.5 NA intron (NM_001128620, intron 2 of 15) intron (NM_001128620, intron 2 of 15) 84001 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 143.833-13 chr17 58266959 58267331 + 0.5 NA intron (NR_027647, intron 10 of 11) intron (NR_027647, intron 10 of 11) 13790 NM_000250 4353 Hs.458272 NM_000250 ENSG00000005381 MPO - myeloperoxidase protein-coding 126.333-73 chr3 24018313 24018687 + 0.5 NA Intergenic L1ME3G|LINE|L1 72379 NM_001145425 9975 Hs.37288 NM_005126 ENSG00000174738 NR1D2 BD73|EAR-1R|REVERBB|REVERBbeta|RVR nuclear receptor subfamily 1 group D member 2 protein-coding 142.833-62 chr5 132531358 132531798 + 0.5 NA Intergenic L1ME3D|LINE|L1 11944 NM_000879 3567 Hs.2247 NM_000879 ENSG00000113525 IL5 EDF|IL-5|TRF interleukin 5 protein-coding 226.834 chr18 2255132 2255964 + 0.5 NA Intergenic L1PB1|LINE|L1 315957 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 153.333-54 chr3 165443773 165444418 + 0.5 NA intron (NR_125764, intron 3 of 5) MIRb|SINE|MIR 237135 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 201.667-55 chr9 106111222 106111803 + 0.5 NA Intergenic Intergenic 416971 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 126.5-66 chr4 44662909 44663238 + 0.5 NA Intergenic Intergenic -11432 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 118.333-75 chr3 97207244 97207620 + 0.5 NA intron (NM_001080448, intron 3 of 17) L2c|LINE|L2 -232175 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 186.5-67 chr9 109045290 109045809 + 0.5 NA TTS (NR_029506) TTS (NR_029506) 749 NR_029506 407036 NR_029506 ENSG00000207698 MIR32 MIRN32|hsa-mir-32|miR-32|miRNA32 microRNA 32 ncRNA 146-32 chr2 13199779 13200270 + 0.5 NA Intergenic Intergenic -193011 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 255.333-28 chr8 124978274 124979183 + 0.5 NA 3' UTR (NM_152412, exon 3 of 3) 3' UTR (NM_152412, exon 3 of 3) 5433 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 192.167-45 chr9 4702032 4702465 + 0.5 NA intron (NM_017913, intron 6 of 6) intron (NM_017913, intron 6 of 6) 22679 NM_017913 55664 Hs.666439 NM_017913 ENSG00000106993 CDC37L1 CDC37B|HARC cell division cycle 37 like 1 protein-coding 172.167-17 chr15 69417122 69417717 + 0.5 NA non-coding (NR_160296, exon 3 of 23) non-coding (NR_160296, exon 3 of 23) -2390 NR_132969 145694 Hs.147229 NR_132969 ENSG00000259426 LOC145694 - uncharacterized LOC145694 ncRNA 150.5-88 chrX 98437970 98438385 + 0.5 NA Intergenic L1MA1|LINE|L1 -873642 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 140.167-75 chr9 99783673 99784281 + 0.5 NA intron (NR_109802, intron 2 of 6) LTR8|LTR|ERV1 35912 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 151.333-30 chr16 56756849 56757224 + 0.5 NA intron (NM_014669, intron 2 of 21) intron (NM_014669, intron 2 of 21) -24793 NM_001242795 9688 Hs.276878 NM_014669 ENSG00000102900 NUP93 NIC96 nucleoporin 93 protein-coding 148-67 chr5 97231237 97231744 + 0.5 NA Intergenic Intergenic -48243 NM_001159749 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 184.167-39 chr5 33153176 33153667 + 0.5 NA Intergenic Intergenic -76314 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 150.333-37 chr13 74025707 74026083 + 0.5 NA intron (NM_007249, intron 1 of 7) intron (NM_007249, intron 1 of 7) 108034 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 144.167-57 chr4 143315946 143316512 + 0.5 NA Intergenic Intergenic -20647 NM_002039 2549 Hs.80720 NM_002039 ENSG00000109458 GAB1 DFNB26 GRB2 associated binding protein 1 protein-coding 119.833-68 chr5 33511942 33512234 + 0.5 NA Intergenic MER89|LTR|ERV1 71312 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 114.833-33 chr2 74368129 74368482 + 0.5 NA intron (NM_004082, intron 16 of 31) intron (NM_004082, intron 16 of 31) 6430 NM_023019 1639 Hs.516111 NM_004082 ENSG00000204843 DCTN1 DAP-150|DP-150|P135 dynactin subunit 1 protein-coding 133-19 chr12 10534551 10534985 + 0.5 NA Intergenic L1M1|LINE|L1 -18611 NR_146455 101060038 NR_146455 LINC02446 - long intergenic non-protein coding RNA 2446 ncRNA 141.667-92 chr5 130511946 130512352 + 0.5 NA Intergenic MIRc|SINE|MIR 607684 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 133.167-3 chr1 89151072 89151489 + 0.5 NA intron (NM_207398, intron 5 of 10) L1MA9|LINE|L1 24723 NM_207398 388646 Hs.591450 NM_207398 ENSG00000213512 GBP7 GBP4L guanylate binding protein 7 protein-coding 145.167-75 chr8 95648231 95648575 + 0.5 NA intron (NR_038205, intron 2 of 2) intron (NR_038205, intron 2 of 2) 299945 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 132.5-36 chr16 68050410 68050889 + 0.5 NA intron (NM_017803, intron 4 of 16) intron (NM_017803, intron 4 of 16) -26782 NM_018380 55794 Hs.458313 NM_018380 ENSG00000182810 DDX28 MDDX28 DEAD-box helicase 28 protein-coding 131.667-93 chr4 93333412 93333859 + 0.5 NA intron (NM_001286838, intron 7 of 14) intron (NM_001286838, intron 7 of 14) -495118 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 118-52 chr2 56729877 56730185 + 0.5 NA Intergenic L2c|LINE|L2 -544261 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 137.167-45 chr4 43685545 43686009 + 0.5 NA Intergenic Intergenic -193234 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 206.167-22 chr5 157048116 157048921 + 0.5 NA intron (NM_001173393, intron 5 of 8) MIRb|SINE|MIR 9723 NM_012206 26762 Hs.129711 NM_012206 ENSG00000113249 HAVCR1 CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1 hepatitis A virus cellular receptor 1 protein-coding 159.833-28 chr2 106190992 106191395 + 0.5 NA intron (NM_025076, intron 1 of 14) intron (NM_025076, intron 1 of 14) 3146 NM_025076 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 136.667-25 chr15 60085862 60086135 + 0.5 NA Intergenic Intergenic 81687 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 170-35 chr19 9229230 9229737 + 0.5 NA Intergenic AluSx1|SINE|Alu -14612 NM_001005191 125958 Hs.446910 NM_001005191 ENSG00000174667 OR7D4 OR19-7|OR19-B|OR19B|OR7D4P|hg105 olfactory receptor family 7 subfamily D member 4 protein-coding 260.667-4 chr15 70675133 70675989 + 0.5 NA intron (NM_018003, intron 13 of 18) L1ME3|LINE|L1 26721 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 166.667-16 chr14 70977160 70977634 + 0.5 NA exon (NM_001308160, exon 6 of 34) exon (NM_001308160, exon 6 of 34) 69938 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 167.667-43 chr2 62686415 62686802 + 0.5 NA intron (NM_001142615, intron 1 of 22) intron (NM_001142615, intron 1 of 22) 12730 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 142.667-79 chr5 35702263 35702722 + 0.5 NA intron (NM_024867, intron 16 of 36) intron (NM_024867, intron 16 of 36) 84629 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 218.167-12 chr18 53199145 53199952 + 0.5 NA intron (NM_005215, intron 9 of 28) (ATAT)n|Simple_repeat|Simple_repeat -37553 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 164.833-15 chr13 78280176 78280763 + 0.5 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) 225614 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 134.5-2 chr1 36703649 36704040 + 0.5 NA Intergenic Intergenic -220530 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 122.667-27 chr14 69093694 69094016 + 0.5 NA intron (NM_003861, intron 5 of 8) intron (NM_003861, intron 5 of 8) 58744 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 135.167-36 chr16 7841112 7841553 + 0.5 NA Intergenic L1PREC2|LINE|L1 508487 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 196.333-40 chr5 103502356 103503106 + 0.5 NA Intergenic Intergenic 39254 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 132.833-41 chr20 56574690 56575106 + 0.5 NA Intergenic L2c|LINE|L2 -2665 NR_136537 105372682 Hs.517135 NR_136537 ENSG00000225657 LINC01716 - long intergenic non-protein coding RNA 1716 ncRNA 113.833-2 chr1 26802338 26802669 + 0.5 NA Intergenic AluJb|SINE|Alu 14315 NM_001202554 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 153.167-9 chr10 124629091 124629628 + 0.5 NA intron (NM_014661, intron 4 of 4) intron (NM_014661, intron 4 of 4) -74669 NR_120630 101927944 Hs.437448 NR_120630 FAM53B-AS1 - FAM53B antisense RNA 1 ncRNA 117.333-69 chr3 73188303 73188636 + 0.5 NA Intergenic Intergenic 126810 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 126-13 chr10 67214167 67214564 + 0.5 NA intron (NM_001127384, intron 6 of 17) L1ME3D|LINE|L1 189045 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 120.667-100 chr6 139139268 139139555 + 0.5 NA intron (NM_016217, intron 1 of 3) intron (NM_016217, intron 1 of 3) 4331 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 127.333-63 chr20 45289902 45290307 + 0.5 NA Intergenic Intergenic -16736 NM_014276 11317 Hs.248217 NM_014276 ENSG00000124232 RBPJL RBPL|RBPSUHL|SUHL recombination signal binding protein for immunoglobulin kappa J region like protein-coding 113.5-23 chr11 103307960 103308366 + 0.5 NA intron (NM_001377, intron 78 of 88) L1MB2|LINE|L1 198737 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 114.167-55 chr20 1825347 1825722 + 0.5 NA Intergenic Intergenic -45788 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 113.333-116 chrX 52002449 52002792 + 0.5 NA Intergenic Intergenic 60853 NR_102368 101340250 NR_102368 ENSG00000221705 SNORA11E - small nucleolar RNA, H/ACA box 11E snoRNA 173.167-39 chr6 44678227 44678889 + 0.5 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -126677 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 119.333-49 chr2 25794835 25795199 + 0.5 NA promoter-TSS (NM_001369347) promoter-TSS (NM_001369347) -326 NM_001369347 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 121.333-9 chr10 8249688 8250028 + 0.5 NA Intergenic Intergenic 18447 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 121-52 chr2 182846493 182846923 + 0.5 NA intron (NM_001463, intron 2 of 5) intron (NM_001463, intron 2 of 5) 19929 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 124.5 chr1 7328387 7328784 + 0.5 NA intron (NM_001349608, intron 4 of 21) L1MEd|LINE|L1 61169 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 115.667-72 chr3 51141925 51142256 + 0.5 NA intron (NM_004947, intron 9 of 52) intron (NM_004947, intron 9 of 52) -243201 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 123.833-6 chr1 246952325 246952757 + 0.5 NA intron (NR_037892, intron 5 of 5) AluJr|SINE|Alu -20593 NR_136586 25909 Hs.300887 NM_015446 ENSG00000153207 AHCTF1 ELYS|MST108|MSTP108|TMBS62 AT-hook containing transcription factor 1 protein-coding 115.667-38 chr16 2902938 2903230 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -8895 NM_020912 84256 Hs.655321 NM_020912 ENSG00000059122 FLYWCH1 - FLYWCH-type zinc finger 1 protein-coding 114.5-74 chr5 92489226 92489502 + 0.5 NA Intergenic MER5A1|DNA|hAT-Charlie 1081979 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 124-61 chr20 46926304 46926704 + 0.5 NA intron (NM_172110, intron 1 of 13) MLT2B1|LTR|ERVL 31661 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 124.833-48 chr2 192633054 192633365 + 0.5 NA Intergenic L1MA8|LINE|L1 -116636 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 133-68 chr4 121207247 121207663 + 0.5 NA intron (NM_001128843, intron 2 of 12) intron (NM_001128843, intron 2 of 12) 9172 NM_001128843 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 135.333-96 chrX 154817531 154818037 + 0.5 NA Intergenic MER4-int|LTR|ERV1 -12257 NM_001166462 4354 Hs.496984 NM_002436 ENSG00000130830 MPP1 AAG12|DXS552E|EMP55|MRG1|PEMP membrane palmitoylated protein 1 protein-coding 192.333-34 chr3 108606705 108607118 + 0.5 NA intron (NM_014648, intron 2 of 32) MER5B|DNA|hAT-Charlie 17189 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 143-69 chr5 136894663 136895110 + 0.5 NA Intergenic L1ME3B|LINE|L1 -233311 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 122.667-6 chr10 52018889 52019236 + 0.5 NA intron (NM_001098512, intron 5 of 17) MSTB1|LTR|ERVL-MaLR 295066 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 122-56 chr3 122176428 122176821 + 0.5 NA Intergenic L1PA11|LINE|L1 -7044 NM_000388 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 222.333-11 chr14 73156913 73157408 + 0.5 NA intron (NM_000021, intron 3 of 11) AluSq|SINE|Alu 20653 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 118.167-36 chr2 201172329 201172664 + 0.5 NA non-coding (NR_147249, exon 10 of 10) non-coding (NR_147249, exon 10 of 10) -10402 NM_032977 843 Hs.5353 NM_001230 ENSG00000003400 CASP10 ALPS2|FLICE2|MCH4 caspase 10 protein-coding 237.333-19 chr2 125211538 125212133 + 0.5 NA Intergenic Intergenic 906150 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 265.167-9 chr2 184658973 184659640 + 0.5 NA intron (NM_194250, intron 1 of 3) MER89|LTR|ERV1 60777 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 116.833-16 chr14 86551505 86551785 + 0.5 NA Intergenic L1MEd|LINE|L1 -354133 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 154-45 chr20 16883164 16883638 + 0.5 NA Intergenic L1ME4a|LINE|L1 135048 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 113.833-91 chr9 2637176 2637479 + 0.5 NA intron (NM_001018056, intron 2 of 17) intron (NM_001018056, intron 2 of 17) -14954 NR_015375 401491 Hs.416043 NR_015375 ENSG00000236404 VLDLR-AS1 linc-VLDLR|lincRNA-VLDLR VLDLR antisense RNA 1 ncRNA 130.167-25 chr18 40981727 40982150 + 0.5 NA Intergenic MER92-int|LTR|ERV1 538739 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 140.333-11 chr10 75369919 75370406 + 0.5 NA intron (NR_120651, intron 1 of 3) intron (NR_120651, intron 1 of 3) -31366 NR_024421 100131213 Hs.534598 NR_024421 ENSG00000237149 ZNF503-AS2 C10orf41|NCRNA00245 ZNF503 antisense RNA 2 ncRNA 235.5-30 chr5 95604508 95605242 + 0.5 NA 3' UTR (NM_198150, exon 8 of 8) 3' UTR (NM_198150, exon 8 of 8) -15212 NM_199243 285601 Hs.143315 NM_199243 ENSG00000178015 GPR150 PGR11 G protein-coupled receptor 150 protein-coding 117-92 chr5 113645815 113646269 + 0.5 NA Intergenic Intergenic 132348 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 124.833-42 chr2 112702349 112702738 + 0.5 NA Intergenic L1MC1|LINE|L1 -18943 NM_001350494 284958 Hs.589714 NM_001350494 ENSG00000144130 NT5DC4 - 5'-nucleotidase domain containing 4 protein-coding 199.667-29 chr2 160714393 160715091 + 0.5 NA Intergenic Intergenic -220935 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 159.833-11 chr10 31137342 31137770 + 0.5 NA Intergenic L1ME4b|LINE|L1 -50327 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 155-66 chr5 111811412 111811768 + 0.5 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -53372 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 126-83 chr6 113149947 113150244 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 283352 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 139.833-63 chr5 67247888 67248384 + 0.5 NA Intergenic Intergenic -51337 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 214-18 chr2 24440296 24441017 + 0.5 NA Intergenic AluJb|SINE|Alu -50598 NM_001362950 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 142.833-79 chrX 91096562 91097034 + 0.5 NA Intergenic Intergenic -338041 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 133.833-22 chr12 335320 335755 + 0.5 NA intron (NM_001042603, intron 10 of 27) intron (NM_001042603, intron 10 of 27) 53783 NM_001042603 5927 Hs.76272 NM_005056 ENSG00000073614 KDM5A RBBP-2|RBBP2|RBP2 lysine demethylase 5A protein-coding 167.5-34 chr2 97648221 97648762 + 0.5 NA TTS (NM_001862) TTS (NM_001862) 2429 NM_001862 1329 Hs.1342 NM_001862 ENSG00000135940 COX5B COXVB cytochrome c oxidase subunit 5B protein-coding 182.833-8 chr11 80173907 80174487 + 0.5 NA Intergenic Intergenic 588606 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 121.333-123 chrX 69760263 69760810 + 0.5 NA intron (NM_001005613, intron 2 of 2) intron (NM_001005613, intron 2 of 2) 144423 NM_001005610 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 128-88 chr7 145068854 145069169 + 0.5 NA Intergenic MER39|LTR|ERV1 -232958 NM_001042482 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 134.667-36 chr16 62223022 62223410 + 0.5 NA Intergenic Intergenic -186778 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 144-50 chr3 161572431 161572922 + 0.5 NA Intergenic Intergenic 75868 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 135.833-66 chr7 27083359 27083693 + 0.5 NA Intergenic L2a|LINE|L2 12474 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 125.667-3 chr1 42111772 42112113 + 0.5 NA Intergenic L2b|LINE|L2 -41468 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 170.167-20 chr14 65671249 65671776 + 0.5 NA intron (NR_038167, intron 7 of 8) MIR3|SINE|MIR 200410 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 181.833-53 chr8 130726286 130726798 + 0.5 NA Intergenic L1PB|LINE|L1 -282868 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 232.333-5 chr11 9687050 9687760 + 0.5 NA intron (NM_015055, intron 1 of 11) intron (NM_015055, intron 1 of 11) 23328 NM_001297714 23075 Hs.153026 NM_015055 ENSG00000133789 SWAP70 HSPC321|SWAP-70 switching B cell complex subunit SWAP70 protein-coding 216.333-18 chr18 2771525 2772245 + 0.5 NA intron (NM_015295, intron 40 of 47) intron (NM_015295, intron 40 of 47) -75121 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 137.833-8 chr10 120863755 120864266 + 0.5 NA intron (NM_018117, intron 5 of 28) (GTTTTAT)n|Simple_repeat|Simple_repeat 12648 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 116.667-88 chr5 60668986 60669433 + 0.5 NA intron (NM_001145208, intron 2 of 9) intron (NM_001145208, intron 2 of 9) 30957 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 158.667-39 chr19 16388788 16389330 + 0.5 NA intron (NM_021235, intron 19 of 22) AluSz|SINE|Alu 64233 NM_016270 10365 Hs.685136 NM_016270 ENSG00000127528 KLF2 LKLF Kruppel like factor 2 protein-coding 133-29 chr14 53595190 53595712 + 0.5 NA Intergenic L1MB7|LINE|L1 353033 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 114.5-3 chr1 96089486 96089902 + 0.5 NA Intergenic L2a|LINE|L2 97626 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 194-60 chr9 82383800 82384317 + 0.5 NA Intergenic Intergenic 395286 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 149.833-18 chr2 101159192 101159741 + 0.5 NA Intergenic Intergenic 7806 NR_135594 100506286 Hs.679790 NR_135594 ENSG00000272902 TBC1D8-AS1 - TBC1 domain family member 8 antisense RNA 1 ncRNA 131.5-11 chr11 33123643 33123994 + 0.5 NA intron (NM_001326, intron 3 of 20) L1ME4b|LINE|L1 37662 NM_001326 1479 Hs.44402 NM_001326 ENSG00000176102 CSTF3 CSTF-77 cleavage stimulation factor subunit 3 protein-coding 123-57 chr20 51636770 51637065 + 0.5 NA intron (NM_006045, intron 15 of 27) AluSz6|SINE|Alu -74078 NM_001258294 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 121-23 chr13 32197331 32197640 + 0.5 NA intron (NM_023037, intron 29 of 60) MIR|SINE|MIR 114469 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1 like protein-coding 133-13 chr10 82688418 82688848 + 0.5 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -455713 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 169-14 chr14 45759665 45760130 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -44295 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 204.167-28 chr5 87704819 87705470 + 0.5 NA Intergenic Intergenic 43102 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 143-32 chr17 67733518 67733903 + 0.5 NA intron (NM_001303272, intron 6 of 16) L1MB5|LINE|L1 -6960 NR_003706 100124536 Hs.693446 NR_003706 ENSG00000200394 SNORA38B - small nucleolar RNA, H/ACA box 38B snoRNA 141.667-99 chr6 151317083 151317459 + 0.5 NA intron (NM_005100, intron 3 of 4) intron (NM_005100, intron 3 of 4) -8260 NM_144497 9590 Hs.371240 NM_005100 ENSG00000131016 AKAP12 AKAP250|SSeCKS A-kinase anchoring protein 12 protein-coding 154.833-38 chr20 59928192 59928596 + 0.5 NA intron (NM_014258, intron 2 of 44) L1ME3Cz|LINE|L1 5243 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 185.5-13 chr12 116104176 116104761 + 0.5 NA intron (NM_015335, intron 3 of 30) intron (NM_015335, intron 3 of 30) 44186 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 161.5-6 chr11 37112872 37113483 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -514898 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 176.333-46 chr4 106211787 106212220 + 0.5 NA intron (NM_001290768, intron 21 of 26) intron (NM_001290768, intron 21 of 26) -103607 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 114.5-37 chr16 50243807 50244256 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie -22520 NM_001286057 113 Hs.513578 NM_001114 ENSG00000121281 ADCY7 AC7 adenylate cyclase 7 protein-coding 206.167-19 chr4 163761650 163762143 + 0.5 NA intron (NM_001166373, intron 3 of 7) intron (NM_001166373, intron 3 of 7) -148362 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 119.833-74 chr6 46000219 46000544 + 0.5 NA intron (NM_001370649, intron 1 of 5) intron (NM_001370649, intron 1 of 5) 15479 NM_016929 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 120.333-90 chr4 185902308 185902567 + 0.5 NA intron (NM_001270771, intron 1 of 23) intron (NM_001270771, intron 1 of 23) 53935 NM_021069 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 141.667-58 chr22 28180575 28181030 + 0.5 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -260190 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 134-57 chr2 11613126 11613676 + 0.5 NA intron (NM_014668, intron 19 of 32) MIR|SINE|MIR 56794 NM_012344 23620 Hs.131138 NM_012344 ENSG00000169006 NTSR2 NTR2 neurotensin receptor 2 protein-coding 119.667 chr1 26800192 26800665 + 0.5 NA Intergenic Intergenic 12240 NM_001202554 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 123-20 chr14 24648004 24648368 + 0.5 NA Intergenic L1PA7|LINE|L1 -13996 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 141.833-18 chr2 22790802 22791190 + 0.5 NA Intergenic Intergenic 254517 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 203-3 chr10 93368710 93369268 + 0.5 NA intron (NM_013451, intron 25 of 53) intron (NM_013451, intron 25 of 53) 113345 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 123.5-64 chr5 85990459 85990857 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -291786 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 159.5-51 chr9 101759270 101759721 + 0.5 NA Intergenic Intergenic -20915 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 152.5-18 chr16 4545409 4545928 + 0.5 NA Intergenic MER31B|LTR|ERV1 -6895 NM_001199056 29965 Hs.654653 NM_013399 ENSG00000089486 CDIP1 C16orf5|CDIP|I1|LITAFL cell death inducing p53 target 1 protein-coding 115.833-24 chr15 83029935 83030191 + 0.5 NA intron (NM_025238, intron 5 of 7) intron (NM_025238, intron 5 of 7) -18424 NM_001160116 123207 Hs.352541 NM_144597 ENSG00000169609 C15orf40 - chromosome 15 open reading frame 40 protein-coding 176.167-38 chr5 161986953 161987531 + 0.5 NA intron (NR_126372, intron 1 of 2) MLT1K|LTR|ERVL-MaLR 13954 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 122.167-63 chr7 4397996 4398536 + 0.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -263429 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 132.167-15 chr12 4842906 4843392 + 0.5 NA intron (NM_002235, intron 1 of 1) intron (NM_002235, intron 1 of 1) 33973 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 138.5-92 chrX 146031852 146032294 + 0.5 NA Intergenic L1PA15-16|LINE|L1 -4201 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 135.667-50 chr2 39133893 39134257 + 0.5 NA Intergenic AluJr4|SINE|Alu -13612 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 113.667-77 chr22 38607554 38607997 + 0.5 NA intron (NM_001013647, intron 11 of 16) MIR3|SINE|MIR 37275 NR_134627 105373031 Hs.144041 NR_134627 LOC105373031 - uncharacterized LOC105373031 ncRNA 120.333-17 chr10 34240443 34240779 + 0.5 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -467931 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 132-34 chr16 25720762 25721109 + 0.5 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 28976 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 158.5-60 chr4 176390850 176391262 + 0.5 NA Intergenic Intergenic 71090 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 120.167-80 chr8 101747573 101747949 + 0.5 NA intron (NM_001040625, intron 4 of 6) AluSq2|SINE|Alu 43208 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 135.833-10 chr12 87040946 87041298 + 0.5 NA Intergenic L2a|LINE|L2 -202122 NM_001351285 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 125-67 chr5 112747021 112747457 + 0.5 NA intron (NM_001354904, intron 2 of 15) intron (NM_001354904, intron 2 of 15) 9354 NM_001354905 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 176.333-29 chr15 70850967 70851608 + 0.5 NA TTS (NM_197958) TTS (NM_197958) -1952 NM_001284357 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 120-41 chr15 101383336 101383835 + 0.5 NA TTS (NM_138322) TTS (NM_138322) 49148 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 182.333-64 chr7 82632064 82632612 + 0.5 NA Intergenic Intergenic -188382 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 207.833-17 chr19 39230356 39230913 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 14372 NM_172139 282617 Hs.406744 NM_172139 ENSG00000197110 IFNL3 IFN-lambda-3|IFN-lambda-4|IL-28B|IL-28C|IL28B|IL28C interferon lambda 3 protein-coding 124.833-21 chr14 63012530 63012990 + 0.5 NA intron (NM_139318, intron 2 of 10) L1ME5|LINE|L1 32698 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 113.667-121 chr7 137354762 137355083 + 0.5 NA Intergenic Intergenic -11189 NM_002825 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 127-81 chr5 63207306 63207789 + 0.5 NA Intergenic L1MEa|LINE|L1 628728 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 157.167-25 chr14 79099258 79099719 + 0.5 NA intron (NR_073547, intron 14 of 20) MER94|DNA|hAT-Blackjack -100494 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 160.167-59 chr7 57908148 57908571 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 458182 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 178.667-40 chr3 68429835 68430432 + 0.5 NA intron (NM_001252216, intron 3 of 4) L2b|LINE|L2 -70504 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 151.333-11 chr10 63645320 63645856 + 0.5 NA Intergenic Intergenic -123698 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 143-28 chr16 78266099 78266668 + 0.5 NA intron (NM_001291997, intron 4 of 7) MER58B|DNA|hAT-Charlie 166729 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 113.333-9 chr1 188463083 188463502 + 0.5 NA Intergenic Intergenic 1019664 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 132.333-45 chr18 707735 708166 + 0.5 NA intron (NM_001318760, intron 1 of 13) AluSx1|SINE|Alu 4680 NM_202758 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 FUCD|RTS|TYMSAS enolase superfamily member 1 protein-coding 118.5-20 chr11 107292782 107293087 + 0.5 NA Intergenic L1ME4c|LINE|L1 164912 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 119.5-100 chr8 9608303 9608677 + 0.5 NA intron (NM_003747, intron 2 of 26) intron (NM_003747, intron 2 of 26) 52578 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 136.333-36 chr16 82380873 82381396 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -210910 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 115-52 chr3 98898150 98898700 + 0.5 NA intron (NM_080927, intron 1 of 15) intron (NM_080927, intron 1 of 15) 3270 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 183.667-11 chr10 11188112 11188597 + 0.5 NA intron (NM_001326339, intron 2 of 11) AluSp|SINE|Alu 23324 NM_001025076 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 115.5-31 chr13 26552564 26552862 + 0.5 NA Intergenic Intergenic -4970 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 117.667-109 chr6 45182714 45183123 + 0.5 NA intron (NM_001350325, intron 2 of 10) L1MB4|LINE|L1 14852 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 128-49 chr2 143220722 143221055 + 0.5 NA intron (NM_018460, intron 4 of 13) MIR|SINE|MIR 91469 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 115-71 chr6 50323334 50323652 + 0.5 NA Intergenic Intergenic -273564 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 156.667-68 chr5 9299335 9299903 + 0.5 NA intron (NM_003966, intron 5 of 22) intron (NM_003966, intron 5 of 22) -211714 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 145.5-48 chr3 98599243 98599573 + 0.5 NA Intergenic AluSx|SINE|Alu -5797 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 124.667-79 chr3 125053977 125054384 + 0.5 NA intron (NM_020733, intron 1 of 16) intron (NM_020733, intron 1 of 16) 1817 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 125.833-61 chr4 31091609 31092066 + 0.5 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -79307 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 144.5-76 chr5 109279561 109280079 + 0.5 NA intron (NR_149040, intron 3 of 3) L1M1|LINE|L1 46549 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 118-26 chr12 89632809 89633287 + 0.5 NA intron (NM_001001323, intron 5 of 21) intron (NM_001001323, intron 5 of 21) 75790 NM_001366532 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 210.5-26 chr2 121921661 121922481 + 0.5 NA Intergenic Intergenic 166420 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 245-11 chr2 95697527 95698249 + 0.5 NA Intergenic Intergenic 105887 NM_138800 129868 Hs.232026 NM_138800 ENSG00000144015 TRIM43 TRIM43A tripartite motif containing 43 protein-coding 187-4 chr1 93923020 93923654 + 0.5 NA Intergenic Intergenic -13739 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 123.5-17 chr12 16510905 16511217 + 0.5 NA Intergenic Intergenic 94318 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 174.167-21 chr2 64202019 64202728 + 0.5 NA intron (NR_033837, intron 2 of 5) intron (NR_033837, intron 2 of 5) 3112 NR_033837 150992 Hs.272318 NR_033837 ENSG00000230923 LINC00309 NCRNA00309 long intergenic non-protein coding RNA 309 ncRNA 211.5-10 chr14 87673149 87673744 + 0.5 NA Intergenic Intergenic -18152 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 128.167-13 chr11 80854973 80855296 + 0.5 NA Intergenic MIRb|SINE|MIR -92331 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 128.833-22 chr12 40026824 40027168 + 0.5 NA intron (NM_052885, intron 3 of 9) AluSx|SINE|Alu 79085 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 159.667-9 chr1 234537871 234538469 + 0.5 NA Intergenic Intergenic -6391 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 175.167-46 chr8 79129057 79129517 + 0.5 NA Intergenic L2b|LINE|L2 -202901 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 129.667-18 chr12 16399568 16400019 + 0.5 NA Intergenic Intergenic 46376 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 147.167-43 chr3 183876620 183876914 + 0.5 NA intron (NM_001324437, intron 1 of 7) Tigger1|DNA|TcMar-Tigger 8113 NM_001324436 55486 Hs.478469 NM_018622 ENSG00000175193 PARL PRO2207|PSARL|PSARL1|PSENIP2|RHBDS1 presenilin associated rhomboid like protein-coding 116.333-18 chr10 92208778 92209269 + 0.5 NA intron (NM_001178137, intron 2 of 9) L2c|LINE|L2 34256 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 165.333-38 chr3 98234656 98235161 + 0.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -29336 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 158.5-17 chr12 72865548 72866041 + 0.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR -293396 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 129.833-54 chr5 16363973 16364484 + 0.5 NA Intergenic L2a|LINE|L2 76874 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 142.167-61 chr5 51036748 51037259 + 0.5 NA Intergenic MIRb|SINE|MIR -66816 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 126.167-21 chr12 3867521 3867890 + 0.5 NA intron (NM_001286522, intron 1 of 7) Charlie25|DNA|hAT-Charlie 5694 NM_001286522 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 115.333-73 chr3 185197810 185198295 + 0.5 NA intron (NM_001966, intron 6 of 6) AluSz|SINE|Alu 35151 NR_038990 339926 Hs.567848 NR_038990 ENSG00000223358 EHHADH-AS1 - EHHADH antisense RNA 1 ncRNA 115.5-83 chr5 138210754 138211086 + 0.5 NA intron (NM_004661, intron 2 of 15) L1PA17|LINE|L1 2403 NM_004661 8697 Hs.73625 NM_004661 ENSG00000094880 CDC23 ANAPC8|APC8|CUT23 cell division cycle 23 protein-coding 165.167-4 chr10 29979208 29979753 + 0.5 NA Intergenic LTR82A|LTR|ERVL 80106 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 138.333-107 chr8 100914168 100914539 + 0.5 NA Intergenic Intergenic 36218 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 125.833-43 chr2 86062972 86063428 + 0.5 NA intron (NM_015425, intron 14 of 33) AluSp|SINE|Alu 42686 NM_015425 25885 Hs.531818 NM_015425 ENSG00000068654 POLR1A A190|AFDCIN|RPA1|RPA194|RPO1-4|RPO14 RNA polymerase I subunit A protein-coding 113.833-94 chrX 72401412 72401866 + 0.5 NA intron (NR_051952, intron 8 of 9) L1MB7|LINE|L1 -94482 NM_001144886 4435 Hs.40403 NM_004143 ENSG00000125931 CITED1 MSG1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 protein-coding 119.167-6 chr1 117499650 117500092 + 0.5 NA intron (NM_006699, intron 11 of 12) intron (NM_006699, intron 11 of 12) 105899 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 151-35 chr2 54280688 54281279 + 0.5 NA intron (NM_001320589, intron 4 of 4) intron (NM_001320589, intron 4 of 4) -24754 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 159.667-31 chr13 93734691 93735114 + 0.5 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 123571 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 124.333-58 chr3 32948715 32948992 + 0.5 NA Intergenic MIRb|SINE|MIR -2791 NM_005508 1233 Hs.184926 NM_005508 ENSG00000183813 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 C-C motif chemokine receptor 4 protein-coding 144.333-12 chr10 13999635 14000063 + 0.5 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) 8701 NM_001318336 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 120.5-33 chr14 82932739 82933005 + 0.5 NA Intergenic L1MC5|LINE|L1 290240 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 134.833-15 chr14 29014230 29014530 + 0.5 NA Intergenic Intergenic -228593 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 126.833-32 chr16 69333293 69333555 + 0.5 NA intron (NM_032382, intron 3 of 5) AluJr|SINE|Alu -2836 NM_022341 64146 Hs.130849 NM_022341 ENSG00000258429 PDF - peptide deformylase, mitochondrial protein-coding 126-80 chr6 44835571 44836019 + 0.5 NA intron (NM_181356, intron 12 of 12) intron (NM_181356, intron 12 of 12) -283914 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 148.333-83 chr5 146387441 146387976 + 0.5 NA Intergenic L2c|LINE|L2 48869 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 190.833-25 chr20 6373152 6373665 + 0.5 NA Intergenic Intergenic -53324 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 156-53 chr3 99709754 99710237 + 0.5 NA intron (NM_001850, intron 2 of 4) intron (NM_001850, intron 2 of 4) 71401 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 186.833-46 chr8 26874142 26874815 + 0.5 NA Intergenic L3b|LINE|CR1 -7200 NM_000680 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 126.833-8 chr1 191637189 191637552 + 0.5 NA Intergenic L1ME2|LINE|L1 -408872 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 127 chr1 105489332 105489792 + 0.5 NA Intergenic MER101B|LTR|ERV1 129373 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 121-82 chr7 53024849 53025242 + 0.5 NA Intergenic HAL1ME|LINE|L1 -10588 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 149-21 chr12 85153445 85153817 + 0.5 NA intron (NM_001079910, intron 21 of 26) intron (NM_001079910, intron 21 of 26) 117280 NM_001079910 84125 Hs.402200 NM_032165 ENSG00000133640 LRRIQ1 - leucine rich repeats and IQ motif containing 1 protein-coding 186.167 chr1 24262316 24262754 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -56822 NM_198173 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 134-100 chr7 132828141 132828486 + 0.5 NA intron (NR_133671, intron 7 of 10) L1ME2|LINE|L1 69343 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 217.5-47 chr7 54642031 54642536 + 0.5 NA Intergenic MLT2B4|LTR|ERVL 85313 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 148.5-54 chr4 104595330 104595846 + 0.5 NA intron (NR_125926, intron 1 of 9) intron (NR_125926, intron 1 of 9) -100694 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 117.5-30 chr2 211076263 211076607 + 0.5 NA Intergenic Intergenic 458864 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 128.667-4 chr1 73516097 73516646 + 0.5 NA Intergenic MIRb|SINE|MIR -158308 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 132.5-77 chr5 134947933 134948275 + 0.5 NA intron (NM_032151, intron 2 of 3) intron (NM_032151, intron 2 of 3) -19803 NM_178019 347732 Hs.631804 NM_178019 ENSG00000152705 CATSPER3 CACRC cation channel sperm associated 3 protein-coding 157-90 chrX 95900794 95901167 + 0.5 NA Intergenic Intergenic 436922 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 207.833-25 chr4 34317148 34317630 + 0.5 NA Intergenic Intergenic -47642 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 186.167-36 chr6 141205043 141205569 + 0.5 NA Intergenic L1P1|LINE|L1 521492 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 114.5-70 chr4 71206212 71206653 + 0.5 NA intron (NM_001098484, intron 1 of 25) intron (NM_001098484, intron 1 of 25) 19146 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 132.833-66 chr8 135089422 135089912 + 0.5 NA Intergenic L2a|LINE|L2 -144464 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 159.333-43 chr2 190208163 190208815 + 0.5 NA intron (NM_198047, intron 12 of 12) intron (NM_198047, intron 12 of 12) 27626 NM_032321 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 124.833-30 chr18 26303962 26304449 + 0.5 NA intron (NR_121653, intron 10 of 15) L1MEd|LINE|L1 77760 NM_001293725 6875 Hs.369519 NM_005640 ENSG00000141384 TAF4B SPGF13|TAF2C2|TAFII105 TATA-box binding protein associated factor 4b protein-coding 124.333-21 chr12 128206439 128206923 + 0.5 NA Intergenic Intergenic -60722 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 153.667-24 chr14 83426623 83427184 + 0.5 NA Intergenic Intergenic 784271 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 118-46 chr17 51296119 51296573 + 0.5 NA intron (NM_016001, intron 12 of 13) intron (NM_016001, intron 12 of 13) 35800 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18 small subunit processome component protein-coding 121.5-59 chr2 207590881 207591260 + 0.5 NA intron (NM_001330133, intron 3 of 3) L1MD3|LINE|L1 31948 NM_001371428 120.667-105 chr7 79931346 79931683 + 0.5 NA Intergenic L1PA11|LINE|L1 -203317 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 114.667-37 chr17 33166027 33166353 + 0.5 NA intron (NM_001094, intron 1 of 9) MIRb|SINE|MIR 126798 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 129.333-17 chr11 58839957 58840353 + 0.5 NA intron (NM_145016, intron 1 of 5) intron (NM_145016, intron 1 of 5) 4549 NM_145016 219970 Hs.254271 NM_145016 ENSG00000156689 GLYATL2 BXMAS2-10|GATF-B glycine-N-acyltransferase like 2 protein-coding 113.333-73 chr3 42720462 42720841 + 0.5 NA intron (NM_144719, intron 13 of 15) PABL_A-int|LTR|ERV1 -11924 NR_046732 100874114 Hs.669654 NR_046732 ENSG00000173811 CCDC13-AS1 - CCDC13 antisense RNA 1 ncRNA 117-38 chr16 26227985 26228351 + 0.5 NA Intergenic MIR|SINE|MIR 202931 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 202.667-54 chr9 105488296 105488748 + 0.5 NA intron (NM_001287191, intron 6 of 13) L1MC1|LINE|L1 -31302 NR_104269 26134 Hs.113150 NR_104269 ENSG00000229419 RALGAPA1P1 GARNL2|GARNL2P|RALGAPA1P|bA235C23.1 Ral GTPase activating protein catalytic alpha subunit 1 pseudogene 1 pseudo 114.667-6 chr1 169228761 169229100 + 0.5 NA intron (NR_104229, intron 10 of 12) intron (NR_104229, intron 10 of 12) 122240 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 147.667-78 chr9 16338837 16339310 + 0.5 NA Intergenic Intergenic -62760 NM_001364979 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 163.333-50 chr3 111347943 111348394 + 0.5 NA Intergenic MER41-int|LTR|ERV1 -194029 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 188.667-34 chr3 39590068 39590519 + 0.5 NA Intergenic Kanga1|DNA|TcMar-Tc2 88227 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 151.667-32 chr18 75933437 75933794 + 0.5 NA Intergenic Intergenic -189383 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 162.5-30 chr2 76973804 76974285 + 0.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -11921 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 134.5-62 chr6 35200470 35200954 + 0.5 NA Intergenic Intergenic -13244 NM_001303136 222663 Hs.12923 NM_152753 ENSG00000146197 SCUBE3 CEGF3 signal peptide, CUB domain and EGF like domain containing 3 protein-coding 156.5-13 chr10 61484296 61484936 + 0.5 NA intron (NR_120643, intron 5 of 5) MER4D0|LTR|ERV1 4575 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 142-7 chr1 185633495 185633892 + 0.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR -5205 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 131.833-41 chr20 13452201 13452496 + 0.5 NA intron (NM_017714, intron 11 of 13) intron (NM_017714, intron 11 of 13) 186584 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 124.167-22 chr13 95860467 95860995 + 0.5 NA intron (NM_020121, intron 32 of 38) L1ME4b|LINE|L1 183592 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 136.833-17 chr13 50748421 50748841 + 0.5 NA intron (NM_198989, intron 1 of 1) intron (NM_198989, intron 1 of 1) -59224 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 150.333-40 chr14 60378085 60378415 + 0.5 NA Intergenic Intergenic 55054 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 151.5-47 chr3 85246549 85247024 + 0.5 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -138924 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 137.167-75 chr9 107539655 107540353 + 0.5 NA Intergenic Intergenic -50235 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 223.333-24 chr3 14986232 14986839 + 0.5 NA intron (NM_003298, intron 1 of 14) intron (NM_003298, intron 1 of 14) -38094 NR_046251 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 163.833-27 chr17 32446234 32446706 + 0.5 NA intron (NM_002815, intron 1 of 13) intron (NM_002815, intron 1 of 13) 1960 NM_002815 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 114.5-53 chr2 177962356 177962642 + 0.5 NA intron (NM_001077197, intron 3 of 20) intron (NM_001077197, intron 3 of 20) -39662 NM_001077358 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 171-38 chr4 13071759 13072235 + 0.5 NA Intergenic Intergenic 412343 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 160.5-57 chr7 116879964 116880389 + 0.5 NA intron (NM_006136, intron 1 of 9) intron (NM_006136, intron 1 of 9) 17589 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 139.167-39 chr2 136105711 136106199 + 0.5 NA Intergenic AluSz|SINE|Alu 10280 NM_001008540 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 128.333-107 chr6 71015311 71015875 + 0.5 NA Intergenic L2c|LINE|L2 -58533 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 145.667-17 chr11 83740389 83740747 + 0.5 NA intron (NM_001142699, intron 18 of 27) L1ME3A|LINE|L1 -58143 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 123.667-95 chr6 95570792 95571093 + 0.5 NA intron (NR_104136, intron 1 of 2) intron (NR_104136, intron 1 of 2) 6509 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 172.833-34 chr3 159521916 159522286 + 0.5 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 239455 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 191.333-40 chr8 106827663 106828431 + 0.5 NA Intergenic Intergenic -57803 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 157.833-19 chr13 53616658 53617083 + 0.5 NA Intergenic L1ME1|LINE|L1 -198549 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 127.833-76 chr8 62295751 62296268 + 0.5 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 47155 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 119.667-75 chr5 20017102 20017430 + 0.5 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -29066 NM_001349561 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 142.833-37 chr2 46445618 46446121 + 0.5 NA Intergenic L1MEc|LINE|L1 16679 NR_103805 101805491 Hs.304781 NR_103805 ENSG00000187600 LINC02583 - long intergenic non-protein coding RNA 2583 ncRNA 168.167-24 chr17 67094175 67094585 + 0.5 NA intron (NM_001330447, intron 31 of 32) Tigger1|DNA|TcMar-Tigger 49826 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 115.333-63 chr20 58085448 58085696 + 0.5 NA Intergenic Intergenic -65330 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 152.167-47 chr4 71978621 71979184 + 0.5 NA Intergenic L1MB2|LINE|L1 -52902 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 139.833-66 chr6 44422909 44423373 + 0.5 NA intron (NM_001253, intron 10 of 15) intron (NM_001253, intron 10 of 15) -12500 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 115.5-47 chr18 26755773 26756126 + 0.5 NA Intergenic Intergenic -52311 NR_024259 728606 Hs.170599 NR_024259 ENSG00000265369 PCAT18 LINC01092 prostate cancer associated transcript 18 ncRNA 133.167-4 chr1 98108476 98109087 + 0.5 NA Intergenic L1PA2|LINE|L1 -59088 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 152.167-61 chr6 82244182 82244692 + 0.5 NA intron (NM_015525, intron 1 of 28).2 intron (NM_015525, intron 1 of 28).2 3307 NM_001300906 25998 Hs.306425 NM_015525 ENSG00000005700 IBTK BTBD26|BTKI inhibitor of Bruton tyrosine kinase protein-coding 152.5-4 chr10 110104685 110105131 + 0.5 NA intron (NM_001320591, intron 3 of 15) MIRb|SINE|MIR -96527 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 197.333-5 chr10 76301006 76301694 + 0.5 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 518589 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 153-6 chr10 24748254 24748897 + 0.5 NA Intergenic AluSz|SINE|Alu -24688 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 152.833-51 chr4 165189081 165189561 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -18240 NM_007246 11275 Hs.388668 NM_007246 ENSG00000109466 KLHL2 ABP-KELCH|MAV|MAYVEN kelch like family member 2 protein-coding 135.333-49 chr20 12311518 12312003 + 0.5 NA Intergenic Intergenic 393867 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 132-57 chr3 163593963 163594269 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -290815 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 183.5-35 chr2 181746724 181747194 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -66294 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 124.333-30 chr14 64698609 64698903 + 0.5 NA Intergenic Intergenic -5668 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 164.5-33 chr2 78015054 78015531 + 0.5 NA intron (NR_110288, intron 1 of 3) Tigger1|DNA|TcMar-Tigger -60266 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 145-23 chr12 38439029 38439529 + 0.5 NA Intergenic L1MC4a|LINE|L1 122505 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 190.833-19 chr16 64353806 64354355 + 0.5 NA Intergenic Intergenic 767983 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 170.833-5 chr1 196579821 196580515 + 0.5 NA intron (NM_001287820, intron 1 of 26) HAL1|LINE|L1 2313 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 125.333-77 chr3 25790985 25791388 + 0.5 NA exon (NM_017897, exon 2 of 3) exon (NM_017897, exon 2 of 3) 1096 NM_017897 54995 Hs.55781 NM_017897 ENSG00000151093 OXSM CEM1|FASN2D|KASI|KS 3-oxoacyl-ACP synthase, mitochondrial protein-coding 165.833-57 chr8 139814290 139814679 + 0.5 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -111361 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 171-20 chr2 34600175 34600791 + 0.5 NA Intergenic Intergenic -77074 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 155.5-20 chr16 61406036 61406577 + 0.5 NA Intergenic Intergenic -350540 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 173.833-49 chr5 108594972 108595541 + 0.5 NA Intergenic L1MC4|LINE|L1 133005 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 122.167-10 chr11 46754699 46755113 + 0.5 NA exon (NM_001008938, exon 36 of 44) exon (NM_001008938, exon 36 of 44) -1714 NR_049846 100847020 NR_049846 ENSG00000263540 MIR5582 - microRNA 5582 ncRNA 113.667-87 chr3 126385068 126385344 + 0.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR 9592 NR_103788 100506907 Hs.369473 NR_103787 ENSG00000249833 CCDC37-DT CCDC37-AS1 CCDC37 divergent transcript ncRNA 196-45 chr3 114475142 114475732 + 0.5 NA intron (NR_121661, intron 1 of 2) L2c|LINE|L2 21844 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 115.5-102 chr8 128401522 128401810 + 0.5 NA Intergenic Intergenic 163013 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 115.833-8 chr10 87932748 87933058 + 0.5 NA intron (NM_001304717, intron 5 of 9) intron (NM_001304717, intron 5 of 9) 69278 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 140-21 chr14 33147877 33148501 + 0.5 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 209310 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 145-18 chr11 35194397 35194829 + 0.5 NA intron (NM_001202556, intron 5 of 7) intron (NM_001202556, intron 5 of 7) 31663 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 150.667-72 chr4 112171944 112172288 + 0.5 NA intron (NM_152400, intron 1 of 1) MIR|SINE|MIR 26662 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 128.833-4 chr1 62425494 62425825 + 0.5 NA Intergenic FRAM|SINE|Alu -10645 NM_001017415 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 136.5-67 chr4 75486635 75487184 + 0.5 NA intron (NM_015436, intron 8 of 8) AluSx4|SINE|Alu 22387 NR_103725 25898 Hs.48297 NM_015436 ENSG00000163743 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1 protein-coding 188-61 chr7 70766673 70767465 + 0.5 NA intron (NM_015570, intron 9 of 18) intron (NM_015570, intron 9 of 18) -365075 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 116.667-51 chr2 12172308 12172847 + 0.5 NA intron (NR_110196, intron 3 of 5) L1MD1|LINE|L1 -26553 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 171.833-46 chr8 89963717 89964191 + 0.5 NA intron (NM_001024688, intron 9 of 16) L2a|LINE|L2 20717 NM_002485 4683 Hs.492208 NM_002485 ENSG00000104320 NBN AT-V1|AT-V2|ATV|NBS|NBS1|P95 nibrin protein-coding 118.5-13 chr1 196355498 196355808 + 0.5 NA intron (NR_146057, intron 13 of 26) intron (NR_146057, intron 13 of 26) 226828 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 117.833-47 chr22 32897387 32897860 + 0.5 NA intron (NM_003490, intron 4 of 13) MIR|SINE|MIR 96807 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 121.333-95 chr6 74160927 74161436 + 0.5 NA intron (NR_110856, intron 1 of 3) L1PB4|LINE|L1 91730 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 123-81 chr7 3444471 3444834 + 0.5 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 143400 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 146.667-52 chr2 72400750 72401082 + 0.5 NA intron (NM_001321729, intron 18 of 22) L1PB4|LINE|L1 -253054 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 120.833-10 chr12 26445933 26446466 + 0.5 NA intron (NM_002223, intron 45 of 56) L2c|LINE|L2 250626 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 141-9 chr10 81493778 81494273 + 0.5 NA Intergenic L1MA6|LINE|L1 -381169 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 180.333-16 chr12 65410569 65411163 + 0.5 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 131879 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 118.5-5 chr1 82138941 82139435 + 0.5 NA Intergenic MIR3|SINE|MIR 336735 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 168.5-26 chr2 37002491 37002904 + 0.5 NA intron (NM_019024, intron 31 of 35) intron (NM_019024, intron 31 of 35) -36161 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 152.5-47 chr4 67827452 67827919 + 0.5 NA intron (NM_004262, intron 7 of 9) intron (NM_004262, intron 7 of 9) 56317 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 116.5-2 chr1 88913153 88913485 + 0.5 NA Intergenic L1MD3|LINE|L1 -21752 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 125.167-57 chr4 34401514 34402014 + 0.5 NA Intergenic Intergenic -132017 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 126.5-46 chr2 136089601 136089942 + 0.5 NA Intergenic Intergenic 26464 NM_001008540 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 202.333-10 chr12 67503364 67504032 + 0.5 NA Intergenic Intergenic -16384 NR_103861 100507175 Hs.505986 NR_103861 ENSG00000203585 LINC02408 - long intergenic non-protein coding RNA 2408 ncRNA 113.167-39 chr2 197877237 197877773 + 0.5 NA intron (NM_006226, intron 1 of 5) L3|LINE|CR1 72912 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 118.333-99 chr6 126195825 126196230 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -143762 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 165.667-32 chr2 16267853 16268321 + 0.5 NA Intergenic MIR|SINE|MIR 217660 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 144.833-39 chr20 45439440 45439858 + 0.5 NA intron (NR_159957, intron 2 of 3) MER4B-int|LTR|ERV1 12227 NR_159957 105372631 Hs.729907 NR_159957 LOC105372631 - uncharacterized LOC105372631 ncRNA 133.5-78 chr8 24060376 24060724 + 0.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -205744 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 124.833-50 chr2 205249991 205250475 + 0.5 NA intron (NM_057177, intron 16 of 21) (TT)n|Simple_repeat|Simple_repeat -432267 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 207-29 chr22 24684415 24685068 + 0.5 NA Intergenic L1PB2|LINE|L1 -25594 NR_024593 646074 Hs.531306 NM_001025230 POM121L10P - POM121 transmembrane nucleoporin like 10, pseudogene pseudo 142-80 chr6 74124970 74125435 + 0.5 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 55751 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 148.5-19 chr13 110878909 110879431 + 0.5 NA non-coding (NR_104587, exon 7 of 7) non-coding (NR_104587, exon 7 of 7) -8862 NR_027701 283487 Hs.245390 NM_178514 ENSG00000255874 LINC00346 C13orf29|NCRNA00346 long intergenic non-protein coding RNA 346 ncRNA 138.167-19 chr14 52134592 52135153 + 0.5 NA Intergenic L1PA13|LINE|L1 -65813 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 123.167-89 chr7 1263065 1263395 + 0.5 NA Intergenic AluJo|SINE|Alu 30358 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 183.333-23 chr15 69951869 69952308 + 0.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR 116854 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 120.833-58 chr5 95723079 95723385 + 0.5 NA intron (NM_001349303, intron 1 of 8) MER30|DNA|hAT-Charlie -8104 NM_014899 22836 Hs.445030 NM_014899 ENSG00000164292 RHOBTB3 - Rho related BTB domain containing 3 protein-coding 119.333-97 chr7 18519985 18520312 + 0.5 NA intron (NM_001204147, intron 1 of 9) intron (NM_001204147, intron 1 of 9) 10878 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 190-8 chr10 80414352 80415012 + 0.5 NA intron (NM_001243782, intron 1 of 5) MIRb|SINE|MIR 849 NM_001243782 84293 Hs.500333 NM_032333 ENSG00000122378 PRXL2A Adrx|C10orf58|FAM213A|PAMM peroxiredoxin like 2A protein-coding 133.333-35 chr14 68428160 68428455 + 0.5 NA intron (NM_133509, intron 9 of 10) intron (NM_133509, intron 9 of 10) 200480 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 118.667-114 chr8 92513637 92513958 + 0.5 NA Intergenic Intergenic 141697 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 128.167-77 chr7 44418021 44418371 + 0.5 NA intron (NM_015332, intron 3 of 5) intron (NM_015332, intron 3 of 5) 72462 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 119.833-77 chr6 135468717 135468987 + 0.5 NA intron (NM_017651, intron 4 of 27) L1PA10|LINE|L1 28888 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 131.5-73 chr6 99284756 99285212 + 0.5 NA intron (NR_144463, intron 5 of 5) intron (NR_144463, intron 5 of 5) 64690 NM_032511 84553 Hs.573245 NM_032511 ENSG00000146267 FAXC C6orf168|dJ273F20 failed axon connections homolog, metaxin like GST domain containing protein-coding 136.333-30 chr15 39943619 39944006 + 0.5 NA intron (NM_001013703, intron 3 of 38) AluJo|SINE|Alu 9697 NM_001013703 440275 Hs.656673 NM_001013703 ENSG00000128829 EIF2AK4 GCN2|PVOD2 eukaryotic translation initiation factor 2 alpha kinase 4 protein-coding 122-53 chr3 110628146 110628671 + 0.5 NA Intergenic LTR8A|LTR|ERV1 441551 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 160.833-48 chr9 84450270 84450768 + 0.5 NA Intergenic LTR8|LTR|ERV1 -81792 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 142.333-98 chr8 84500108 84500706 + 0.5 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 84923 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 122.5-29 chr14 39047264 39047705 + 0.5 NA intron (NM_006364, intron 15 of 19) intron (NM_006364, intron 15 of 19) -55656 NR_146545 105370458 NR_146545 ENSG00000258651 SEC23A-AS1 - SEC23A antisense RNA 1 ncRNA 184-45 chr5 29747302 29747779 + 0.5 NA Intergenic L1ME2z|LINE|L1 -133020 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 139.5-44 chr4 24519941 24520559 + 0.5 NA promoter-TSS (NR_030299) promoter-TSS (NR_030299) 40 NR_030299 693158 NR_030299 ENSG00000207697 MIR573 MIRN573|hsa-mir-573|mir-573 microRNA 573 ncRNA 114.5-33 chr14 57398187 57398491 + 0.5 NA intron (NM_001011713, intron 3 of 4) intron (NM_001011713, intron 3 of 4) 7753 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 186.833-26 chr2 116629529 116630019 + 0.5 NA Intergenic Intergenic -1184917 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 207.333-18 chr14 60093990 60094741 + 0.5 NA intron (NM_022495, intron 1 of 9) intron (NM_022495, intron 1 of 9) 2442 NM_001330177 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 119.667-90 chr7 17377271 17377592 + 0.5 NA intron (NR_110015, intron 1 of 2) AluY|SINE|Alu 2514 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 119.833-10 chr1 182228800 182229074 + 0.5 NA intron (NR_104175, intron 2 of 2) AluY|SINE|Alu 85124 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 133.167-28 chr19 19016846 19017389 + 0.5 NA intron (NR_147915, intron 4 of 11) AluJb|SINE|Alu 16400 NM_014884 10147 Hs.77876 NM_014884 ENSG00000064607 SUGP2 SFRS14|SRFS14 SURP and G-patch domain containing 2 protein-coding 139.333 chr1 53922862 53923327 + 0.5 NA intron (NM_016126, intron 5 of 5) intron (NM_016126, intron 5 of 5) 22729 NM_016126 51668 Hs.525462 NM_016126 ENSG00000081870 HSPB11 C1orf41|HSPCO34|IFT25|PP25 heat shock protein family B (small) member 11 protein-coding 128.5-69 chr6 146660594 146660910 + 0.5 NA intron (NM_024694, intron 5 of 35) L1ME3G|LINE|L1 61780 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 132.667-3 chr1 156975023 156975342 + 0.5 NA intron (NM_198236, intron 7 of 40) L1MB7|LINE|L1 -38938 NR_030527 768220 NR_030527 ENSG00000211581 MIR765 MIRN765|hsa-mir-765|mir-765 microRNA 765 ncRNA 132.333-63 chr20 50987842 50988215 + 0.5 NA Intergenic Intergenic 29210 NM_014484 27304 Hs.159410 NM_014484 ENSG00000124217 MOCS3 UBA4 molybdenum cofactor synthesis 3 protein-coding 127-10 chr10 84014967 84015282 + 0.5 NA Intergenic Intergenic -124385 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 117.667 chr1 51805236 51805563 + 0.5 NA intron (NM_001101662, intron 19 of 30) intron (NM_001101662, intron 19 of 30) 31003 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 132.833-59 chr7 36830712 36831291 + 0.5 NA Intergenic L1M5|LINE|L1 88431 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 134.167-5 chr1 197568137 197568659 + 0.5 NA intron (NM_144977, intron 15 of 15) L1MA8|LINE|L1 207082 NM_001300858 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 156.334 chr20 13332321 13333051 + 0.5 NA Intergenic MER45B|DNA|hAT-Tip100 -92999 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 126.5-39 chr19 37973153 37973413 + 0.5 NA intron (NM_015073, intron 1 of 21) AluSx1|SINE|Alu 66075 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 114-58 chr2 146627315 146627561 + 0.5 NA Intergenic MSTC|LTR|ERVL-MaLR 40381 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 194-26 chr17 82893229 82893812 + 0.5 NA intron (NM_005993, intron 16 of 38) intron (NM_005993, intron 16 of 38) -53498 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 159.5-40 chr4 178660467 178660931 + 0.5 NA Intergenic L1M5|LINE|L1 -752763 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 134.667-26 chr14 52130909 52131294 + 0.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -62042 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 136.333-72 chr5 9922209 9922664 + 0.5 NA Intergenic Intergenic -18612 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 136.833-11 chr11 72162065 72162578 + 0.5 NA Intergenic L1MC4|LINE|L1 26596 NM_001318045 2352 Hs.352 NM_000804 ENSG00000110203 FOLR3 FR-G|FR-gamma|FRgamma|gamma-hFR folate receptor gamma protein-coding 118.5-88 chr7 2687256 2687653 + 0.5 NA promoter-TSS (NM_001284355) promoter-TSS (NM_001284355) -748 NM_001284355 155185 Hs.42221 NM_133463 ENSG00000174945 AMZ1 - archaelysin family metallopeptidase 1 protein-coding 121.333-60 chr21 29242200 29242522 + 0.5 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 48867 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 139.667-8 chr1 167722784 167723305 + 0.5 NA intron (NM_024569, intron 1 of 4) intron (NM_024569, intron 1 of 4) 1062 NM_001146191 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 140.5-39 chr2 185708455 185708885 + 0.5 NA Intergenic Intergenic 30049 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 148.833-21 chr15 61473386 61473905 + 0.5 NA Intergenic Intergenic -244343 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 146.333-77 chr5 11870460 11870917 + 0.5 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 33758 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 125.667-46 chr17 73081110 73081447 + 0.5 NA intron (NM_001352692, intron 3 of 9) L1PB1|LINE|L1 11410 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 131.667-130 chr9 18718937 18719250 + 0.5 NA intron (NM_001040272, intron 14 of 28) intron (NM_001040272, intron 14 of 28) 145787 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 131.167-21 chr12 93025261 93025654 + 0.5 NA intron (NR_040096, intron 3 of 4) intron (NR_040096, intron 3 of 4) -96162 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 127.333-122 chrX 95688043 95688448 + 0.5 NA Intergenic Intergenic -625019 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 242-6 chr14 69118544 69119341 + 0.5 NA intron (NM_003861, intron 3 of 8) intron (NM_003861, intron 3 of 8) 33657 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 127.833-59 chr5 79531298 79531650 + 0.5 NA Intergenic Intergenic -17340 NM_004272 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 127-59 chr20 57226610 57226936 + 0.5 NA intron (NM_001719, intron 2 of 6) intron (NM_001719, intron 2 of 6) 13077 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 122.5-5 chr1 192161429 192161821 + 0.5 NA intron (NM_130782, intron 3 of 4) LTR101_Mam|LTR|ERVL 3163 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 121.167-49 chr21 29081190 29081646 + 0.5 NA intron (NM_001371374, intron 2 of 11) AluY|SINE|Alu 4304 NM_020152 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 114-19 chr10 109483868 109484387 + 0.5 NA Intergenic Intergenic 439119 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 182.5-29 chr3 99483670 99484401 + 0.5 NA Intergenic Intergenic -154559 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 136-46 chr22 46349842 46350232 + 0.5 NA intron (NM_001282783, intron 3 of 9) intron (NM_001282783, intron 3 of 9) 14323 NM_001282784 55687 Hs.439524 NM_018006 ENSG00000100416 TRMU LCAL3|MTO2|MTU1|TRMT|TRMT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 136.5-50 chr2 113041863 113042252 + 0.5 NA intron (NM_173178, intron 1 of 4) intron (NM_173178, intron 1 of 4) 10810 NM_014438 27177 Hs.278909 NM_014438 ENSG00000136696 IL36B FIL1|FIL1-(ETA)|FIL1H|FILI-(ETA)|IL-1F8|IL-1H2|IL1-ETA|IL1F8|IL1H2 interleukin 36 beta protein-coding 152.333-44 chr4 25550401 25550847 + 0.5 NA intron (NR_134641, intron 2 of 3) intron (NR_134641, intron 2 of 3) 18722 NR_134641 101929161 Hs.125638 NR_134641 LOC101929161 - uncharacterized LOC101929161 ncRNA 117-70 chr3 154556177 154556630 + 0.5 NA Intergenic Intergenic -126213 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 125.833-54 chr21 29033312 29033630 + 0.5 NA intron (NM_001032410, intron 4 of 18) intron (NM_001032410, intron 4 of 18) 8803 NM_006447 10600 Hs.99819 NM_006447 ENSG00000156256 USP16 UBP-M|UBPM ubiquitin specific peptidase 16 protein-coding 120.667-86 chr4 33533152 33533665 + 0.5 NA Intergenic Intergenic 506485 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 210.333-33 chr6 55669900 55670525 + 0.5 NA Intergenic L1MEf|LINE|L1 -90998 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 113.5-91 chr8 131292979 131293491 + 0.5 NA Intergenic L1MB4|LINE|L1 -252326 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 164.5-34 chr2 115684076 115684714 + 0.5 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 340580 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 169.667-2 chr1 198337925 198338358 + 0.5 NA Intergenic Intergenic 181143 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 149-5 chr1 63065847 63066251 + 0.5 NA Intergenic Intergenic -53578 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 164-76 chr8 116348424 116348775 + 0.5 NA Intergenic Intergenic -23540 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 205.333-40 chr3 169835960 169836391 + 0.5 NA intron (NM_001080460, intron 4 of 4) L2a|LINE|L2 14284 NM_001080460 344657 Hs.319484 NM_001080460 ENSG00000188306 LRRIQ4 LRRC64 leucine rich repeats and IQ motif containing 4 protein-coding 120.5-58 chr22 24808999 24809372 + 0.5 NA intron (NM_001098498, intron 2 of 23) intron (NM_001098498, intron 2 of 23) 2964 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 183.167-15 chr14 20512642 20513337 + 0.5 NA Intergenic Intergenic 2517 NM_001012975 338879 Hs.451057 NM_001012975 ENSG00000182545 RNASE10 RAH1|RNASE9 ribonuclease A family member 10 (inactive) protein-coding 137.333-82 chr6 17516743 17517182 + 0.5 NA intron (NM_006366, intron 7 of 12) intron (NM_006366, intron 7 of 12) -5697 NR_110855 101928491 Hs.622876 NR_110855 LOC101928491 - uncharacterized LOC101928491 ncRNA 115.833-12 chr12 21219235 21219737 + 0.5 NA intron (NM_006446, intron 12 of 14) L2a|LINE|L2 88292 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 130.5-21 chr14 68145477 68145870 + 0.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 322081 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 189.333-50 chr7 110947524 110947947 + 0.5 NA intron (NM_032549, intron 4 of 5) intron (NM_032549, intron 4 of 5) -143271 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 130.667-64 chr4 41822147 41822638 + 0.5 NA Intergenic Intergenic 60219 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 187.333-49 chr3 14449243 14449906 + 0.5 NA intron (NR_103507, intron 5 of 13) MIR|SINE|MIR 46968 NR_103507 6533 Hs.529488 NM_003043 ENSG00000131389 SLC6A6 TAUT solute carrier family 6 member 6 protein-coding 127.833-6 chr1 221822660 221823043 + 0.5 NA Intergenic Intergenic 17815 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 121.333-27 chr14 48994721 48995114 + 0.5 NA Intergenic L1M6|LINE|L1 591463 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 141.333-3 chr1 81348545 81349031 + 0.5 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 42393 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 152.833-16 chr14 58700507 58701176 + 0.5 NA Intergenic Intergenic 62004 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 149.833-61 chr8 137721615 137721923 + 0.5 NA Intergenic L1MB7|LINE|L1 -308181 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 163.5-34 chr2 103080845 103081288 + 0.5 NA Intergenic Intergenic -96637 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 154.5-16 chr12 54999916 55000354 + 0.5 NA Intergenic Intergenic -15373 NM_001351149 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 141.167-41 chr2 98560042 98560461 + 0.5 NA intron (NM_001351428, intron 17 of 24) intron (NM_001351428, intron 17 of 24) 48261 NM_001008215 493753 Hs.596537 NM_001008215 ENSG00000183513 COA5 6330578E17Rik|C2orf64|CEMCOX3|Pet191 cytochrome c oxidase assembly factor 5 protein-coding 113.167-29 chr18 2600462 2600841 + 0.5 NA intron (NM_006101, intron 12 of 16) intron (NM_006101, intron 12 of 16) 29094 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 214-22 chr2 63594842 63595653 + 0.5 NA intron (NM_001199112, intron 2 of 7) intron (NM_001199112, intron 2 of 7) 6096 NM_001199111 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 149-41 chr2 133961672 133962422 + 0.333333 NA Intergenic Intergenic -157888 NM_001371457 130.5-64 chr5 72630079 72630495 + 0.333333 NA intron (NR_105007, intron 1 of 2) intron (NR_105007, intron 1 of 2) 30382 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 122.167-20 chr14 53623326 53623956 + 0.333333 NA Intergenic Intergenic 324843 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 138.167-48 chr20 54777076 54777588 + 0.333333 NA Intergenic Intergenic 301739 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 113.834-3 chr2 78967737 78968406 + 0.333333 NA Intergenic Intergenic -57631 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 134.167-23 chr14 46669840 46670443 + 0.333333 NA Intergenic Intergenic -18360 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 116.5-12 chr11 108675676 108676301 + 0.333333 NA intron (NM_004398, intron 3 of 17) intron (NM_004398, intron 3 of 17) 10919 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 137.833-45 chr6 34569374 34569849 + 0.333333 NA Intergenic MIR|SINE|MIR -13278 NM_001252294 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding 129.5-83 chr7 145857024 145857587 + 0.333333 NA Intergenic MLT1A|LTR|ERVL-MaLR -916966 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 121.167-77 chr6 155087942 155088487 + 0.333333 NA Intergenic AluSp|SINE|Alu -2075 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 146.334-3 chr14 76160194 76161016 + 0.333333 NA intron (NM_001322028, intron 2 of 9) intron (NM_001322028, intron 2 of 9) 6251 NR_110314 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 120.5-47 chr19 3994078 3994534 + 0.333333 NA Intergenic Intergenic -8843 NM_001961 1938 Hs.515070 NM_001961 ENSG00000167658 EEF2 EEF-2|EF-2|EF2|SCA26 eukaryotic translation elongation factor 2 protein-coding 120.5-5 chr1 197428091 197428629 + 0.333333 NA intron (NM_001193640, intron 5 of 9) intron (NM_001193640, intron 5 of 9) 160108 NM_201253 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 127.167-42 chr18 34654038 34654610 + 0.333333 NA intron (NM_001198939, intron 1 of 21) intron (NM_001198939, intron 1 of 21) -55974 NM_032978 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 124.833-54 chr22 24960695 24961174 + 0.333333 NA Intergenic Intergenic -14239 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 131.167-51 chr3 70906905 70907408 + 0.333333 NA Intergenic MLT1I|LTR|ERVL-MaLR 157768 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 115.667-108 chr6 120450357 120450705 + 0.333333 NA Intergenic MIRb|SINE|MIR 435352 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 114.333-27 chr12 49081550 49082001 + 0.333333 NA Intergenic L2a|LINE|L2 -11796 NM_144593 121268 Hs.159013 NM_144593 ENSG00000167550 RHEBL1 RHEBL1c RHEB like 1 protein-coding 139 chr1 147113273 147113781 + 0.333333 NA non-coding (NR_103466, exon 2 of 6) non-coding (NR_103466, exon 2 of 6) 819 NR_103466 644861 Hs.451804 NR_103466 NBPF13P - NBPF member 13, pseudogene pseudo 114.833-75 chr9 86288796 86289341 + 0.333333 NA intron (NM_001185059, intron 26 of 26) intron (NM_001185059, intron 26 of 26) -6530 NM_030940 81689 Hs.449291 NM_030940 ENSG00000135070 ISCA1 HBLD2|ISA1|MMDS5|hIscA iron-sulfur cluster assembly 1 protein-coding 147.167-35 chr2 187890658 187891176 + 0.333333 NA Intergenic LTR43|LTR|ERV1 -336412 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 137.167-31 chr2 19271676 19272231 + 0.333333 NA Intergenic Intergenic -76476 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 131.5-26 chr14 62670537 62671080 + 0.333333 NA Intergenic Intergenic 374650 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 124.167-53 chr20 33212479 33212851 + 0.333333 NA Intergenic MIR|SINE|MIR -4645 NM_001042439 128861 Hs.360989 NM_178466 ENSG00000131059 BPIFA3 C20orf71|SPLUNC3 BPI fold containing family A member 3 protein-coding 138.5-78 chr8 91189803 91190605 + 0.333333 NA intron (NR_148895, intron 8 of 10) intron (NR_148895, intron 8 of 10) -15281 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 204.833-10 chr13 65720786 65721576 + 0.333333 NA Intergenic Intergenic -144866 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 134.5-37 chr18 28082038 28082504 + 0.333333 NA intron (NM_001792, intron 2 of 15) AluJr|SINE|Alu -45630 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 125.333-81 chr3 121131318 121131803 + 0.333333 NA intron (NR_145517, intron 7 of 8) MER58B|DNA|hAT-Charlie 81920 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 119.5-35 chr15 94450640 94451221 + 0.333333 NA intron (NM_018349, intron 18 of 21) intron (NM_018349, intron 18 of 21) 95000 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 124.667-117 chr8 9517201 9517933 + 0.333333 NA Intergenic Intergenic -38345 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 113.333-14 chr10 7900364 7900895 + 0.333333 NA intron (NM_031923, intron 2 of 6) intron (NM_031923, intron 2 of 6) 82124 NM_031923 83860 Hs.527688 NM_031923 ENSG00000165632 TAF3 TAF140|TAFII-140|TAFII140 TATA-box binding protein associated factor 3 protein-coding 118-63 chr2 229129467 229129951 + 0.333333 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 102383 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 127.5-73 chr9 15315659 15316105 + 0.333333 NA Intergenic AluY|SINE|Alu -8522 NM_152574 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 137.5-34 chr14 86605775 86606329 + 0.333333 NA Intergenic LTR78B|LTR|ERV1 -299726 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 132.833-42 chr20 59696330 59696855 + 0.333333 NA intron (NM_001199506, intron 1 of 12) intron (NM_001199506, intron 1 of 12) 19931 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 186.333-40 chr3 79201048 79201858 + 0.333333 NA intron (NM_002941, intron 2 of 30) MIR|SINE|MIR -181994 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 120.667-95 chr5 127689180 127689759 + 0.333333 NA Intergenic Intergenic -13920 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 126-10 chr10 41842872 41843577 + 0.333333 NA Intergenic Intergenic 524821 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 157.5-28 chr18 65122893 65123405 + 0.333333 NA Intergenic THE1D-int|LTR|ERVL-MaLR -627103 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 127.333-24 chr12 48741492 48741947 + 0.333333 NA intron (NM_001351125, intron 2 of 4) AluJo|SINE|Alu 14284 NM_001351123 255411 Hs.404103 NM_001351123 ENSG00000257987 TEX49 LINC00935 testis expressed 49 protein-coding 156-86 chr8 74427874 74428505 + 0.333333 NA intron (NM_001362931, intron 5 of 5) AluJr|SINE|Alu 77786 NM_001362931 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 120.833-15 chr15 45446959 45447435 + 0.333333 NA Intergenic AluJr|SINE|Alu 14147 NR_030599 100126311 NR_030599 ENSG00000284386 MIR147B MIRN147B|mir-147b microRNA 147b ncRNA 118.167-5 chr1 226756998 226757661 + 0.333333 NA Intergenic Tigger1|DNA|TcMar-Tigger -18154 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 147.667-73 chr8 107553094 107553736 + 0.333333 NA Intergenic Intergenic -55497 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 114.167-16 chr11 77837758 77838436 + 0.333333 NA intron (NM_001316960, intron 2 of 4) intron (NM_001316960, intron 2 of 4) -3041 NM_001363564 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 124.5-57 chr5 26458054 26458757 + 0.333333 NA Intergenic L1PA7|LINE|L1 580181 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 116-100 chr9 79580809 79581431 + 0.333333 NA intron (NM_001351556, intron 4 of 18) intron (NM_001351556, intron 4 of 18) 7943 NM_001351546 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 128.833-43 chr2 58347107 58347584 + 0.333333 NA Intergenic L1MA4A|LINE|L1 71468 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 120.667-108 chr7 92969951 92970561 + 0.333333 NA Intergenic Intergenic -133629 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 113.667-26 chr11 95046568 95047139 + 0.333333 NA Intergenic Intergenic -20024 NM_032102 10929 Hs.476680 NM_032102 ENSG00000263465 SRSF8 DSM-1|SFRS2B|SRP46 serine and arginine rich splicing factor 8 protein-coding 143.5-90 chr8 129837554 129838073 + 0.333333 NA Intergenic Intergenic -51189 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 117-67 chr21 17978691 17979301 + 0.333333 NA intron (NM_001204177, intron 1 of 4) MLT1E2|LTR|ERVL-MaLR 61656 NM_001204176 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 136-61 chr4 186804228 186804845 + 0.333333 NA Intergenic Intergenic -80680 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 132.5-37 chr16 79181922 79182421 + 0.333333 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 418566 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 146.5-98 chrX 90090558 90091021 + 0.333333 NA Intergenic MER4B-int|LTR|ERV1 168881 NM_138960 90316 Hs.592220 NM_138960 ENSG00000153779 TGIF2LX TGIFLX TGFB induced factor homeobox 2 like X-linked protein-coding 122.167-38 chr2 166574707 166575078 + 0.333333 NA Intergenic AluSx|SINE|Alu -87921 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 176.833-5 chr12 28441017 28441673 + 0.333333 NA intron (NM_001352082, intron 9 of 13) L1ME2z|LINE|L1 -250607 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 122.834-3 chr3 189733375 189734066 + 0.333333 NA intron (NM_003722, intron 1 of 13) intron (NM_003722, intron 1 of 13) -55939 NM_001114981 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 117.167-101 chrX 97715234 97715601 + 0.333333 NA Intergenic AluY|SINE|Alu -150882 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 125-32 chr17 29673417 29674163 + 0.333333 NA TTS (NM_001282130) TTS (NM_001282130) -52367 NM_032854 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 131.667-108 chr5 175511179 175511650 + 0.333333 NA intron (NM_001322983, intron 4 of 6) intron (NM_001322983, intron 4 of 6) 32854 NM_001322977 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 SLC56A1|TCC sideroflexin 1 protein-coding 116.333-102 chr8 105041811 105042198 + 0.333333 NA Intergenic L1PA13|LINE|L1 -276434 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 136-68 chr5 58268952 58269493 + 0.333333 NA Intergenic THE1D|LTR|ERVL-MaLR -146881 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 172.667-68 chr6 27065533 27066429 + 0.333333 NA Intergenic Intergenic -45675 NR_026776 100270746 Hs.590428 NR_026776 LOC100270746 - uncharacterized LOC100270746 ncRNA 160.5-42 chr5 5640290 5641234 + 0.333333 NA Intergenic Intergenic 218085 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 132-77 chr5 146485156 146485874 + 0.333333 NA intron (NM_006706, intron 14 of 21) intron (NM_006706, intron 14 of 21) 30598 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 136.5-55 chr2 188067646 188068245 + 0.333333 NA intron (NR_126396, intron 2 of 2) intron (NR_126396, intron 2 of 2) 219746 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 126.833-7 chr1 175647624 175648262 + 0.333333 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 95652 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 142.167-68 chr6 55786285 55787099 + 0.333333 NA intron (NM_001329754, intron 3 of 5) intron (NM_001329754, intron 3 of 5) 88898 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 151.5-61 chr5 154248665 154249510 + 0.333333 NA intron (NM_198321, intron 1 of 11) MIR3|SINE|MIR 58354 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 135.5-78 chr8 111896165 111896702 + 0.333333 NA Intergenic Intergenic 519794 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 140.667-45 chr2 169177696 169178500 + 0.333333 NA intron (NM_004525, intron 52 of 78) intron (NM_004525, intron 52 of 78) 96991 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 149.667-75 chr8 90843363 90844063 + 0.333333 NA intron (NM_022351, intron 3 of 12) L2b|LINE|L2 51938 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 130.667-34 chr17 69679333 69679855 + 0.333333 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 85607 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 146.333-7 chr10 33130135 33130840 + 0.333333 NA Intergenic Intergenic -13680 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 117.667-23 chr11 19981026 19981624 + 0.333333 NA intron (NM_182964, intron 10 of 37) intron (NM_182964, intron 10 of 37) -41231 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 134.5-70 chr7 106136036 106136475 + 0.333333 NA Intergenic Intergenic -23679 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 141.833-33 chr5 36873684 36874202 + 0.333333 NA non-coding (NR_046262, exon 1 of 1) non-coding (NR_046262, exon 1 of 1) 2751 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 132.833-65 chr8 125212245 125212738 + 0.333333 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 120631 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 119-59 chr2 225896769 225897327 + 0.333333 NA Intergenic L1MD2|LINE|L1 -245746 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 123.833-23 chr15 76561414 76561983 + 0.333333 NA intron (NR_148227, intron 23 of 32) intron (NR_148227, intron 23 of 32) -24949 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 119.667-93 chr8 32079687 32080257 + 0.333333 NA intron (NR_104156, intron 3 of 3) intron (NR_104156, intron 3 of 3) 53754 NR_104157 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 164.5-24 chr16 61640038 61640684 + 0.333333 NA Intergenic Intergenic 396077 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 125.333-127 chr9 34944756 34945274 + 0.333333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -12472 NM_001304333 23349 Hs.7989 NM_015297 ENSG00000122733 PHF24 - PHD finger protein 24 protein-coding 139.833-73 chr8 104206498 104207075 + 0.333333 NA intron (NM_001348498, intron 20 of 24) intron (NM_001348498, intron 20 of 24) -16549 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 129.834-8 chr6 111148301 111149008 + 0.333333 NA intron (NM_018593, intron 1 of 5) intron (NM_018593, intron 1 of 5) 34820 NR_145796 109623478 NR_145796 SNORD166 - small nucleolar RNA, C/D box 166 snoRNA 115-56 chr4 47152491 47152964 + 0.333333 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 121160 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 141.833-23 chr3 1588777 1589411 + 0.333333 NA Intergenic L1PA15|LINE|L1 496070 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 118.833-59 chr4 30854996 30855502 + 0.333333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 134880 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 137.333-105 chr8 136823206 136823746 + 0.333333 NA intron (NR_147196, intron 4 of 5) MSTC|LTR|ERVL-MaLR 292678 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 118-34 chr14 65428119 65428642 + 0.333333 NA intron (NR_038170, intron 1 of 10) MLT1A0|LTR|ERVL-MaLR 15650 NR_038170 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 126.667-57 chr3 76954003 76954447 + 0.333333 NA Intergenic Intergenic -85874 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 123.333-82 chr4 72192223 72192810 + 0.333333 NA Intergenic Intergenic 153384 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 123.167-73 chr4 81333781 81334221 + 0.333333 NA Intergenic Intergenic -118779 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 154.667-53 chr5 21138147 21138684 + 0.333333 NA Intergenic Intergenic -321065 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 113.334-3 chr2 77873502 77874136 + 0.333333 NA intron (NR_110288, intron 2 of 3) intron (NR_110288, intron 2 of 3) -42115 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 144.167-16 chr11 126753585 126754133 + 0.333333 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) 97773 NR_120533 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 124.833-70 chr4 138030672 138031189 + 0.333333 NA intron (NR_037866, intron 9 of 10) MLT1F-int|LTR|ERVL-MaLR -58084 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 132.5-7 chr10 66941120 66941685 + 0.333333 NA intron (NM_178011, intron 2 of 2) intron (NM_178011, intron 2 of 2) 15366 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 150-80 chr7 97072725 97073503 + 0.333333 NA Intergenic L1PB1|LINE|L1 -43479 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 161.667-27 chr12 23933801 23934449 + 0.333333 NA intron (NM_152989, intron 4 of 17) L4_C_Mam|LINE|RTE-X 15545 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 138.833-75 chr6 54620198 54620699 + 0.333333 NA Intergenic Intergenic -226323 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 145.167-57 chr5 144416075 144416608 + 0.333333 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 210950 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 128.5-42 chr2 157088004 157088620 + 0.333333 NA Intergenic Intergenic -169393 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 123.5-14 chr10 112030646 112031311 + 0.333333 NA Intergenic Charlie1a|DNA|hAT-Charlie 152787 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 114.167-58 chr20 63383027 63383519 + 0.333333 NA Intergenic Intergenic -21877 NM_000744 1137 Hs.10734 NM_000744 ENSG00000101204 CHRNA4 BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4 cholinergic receptor nicotinic alpha 4 subunit protein-coding 119.167-13 chr11 90781717 90782306 + 0.333333 NA intron (NR_104190, intron 3 of 6) Helitron1Na_Mam|RC|Helitron 87191 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 140.667-63 chr4 88488506 88489112 + 0.333333 NA intron (NM_016323, intron 15 of 22) intron (NM_016323, intron 15 of 22) 31690 NM_016323 51191 Hs.26663 NM_016323 ENSG00000138646 HERC5 CEB1|CEBP1 HECT and RLD domain containing E3 ubiquitin protein ligase 5 protein-coding 129-12 chr10 51121668 51122370 + 0.333333 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 47532 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 131-75 chr8 112605502 112605931 + 0.333333 NA intron (NM_001363185, intron 20 of 66) L1PA15|LINE|L1 -37777 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 115.167-15 chr1 240120972 240121590 + 0.333333 NA intron (NM_020066, intron 1 of 17) MER5B|DNA|hAT-Charlie 29398 NM_001348094 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 120.333-57 chr2 155671772 155672350 + 0.333333 NA Intergenic L1M2|LINE|L1 582870 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 118.833-13 chr11 111118907 111119336 + 0.333333 NA Intergenic AluJb|SINE|Alu -21803 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 113.5-16 chr10 86459808 86460274 + 0.333333 NA intron (NM_001318328, intron 11 of 18) AluSz6|SINE|Alu 61743 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 175.833-27 chr21 26820514 26821157 + 0.333333 NA Intergenic Intergenic 24574 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 149.667 chr1 39749429 39750017 + 0.333333 NA intron (NM_006112, intron 8 of 9) L2b|LINE|L2 10878 NR_036543 10450 Hs.524690 NM_006112 ENSG00000084072 PPIE CYP-33|CYP33 peptidylprolyl isomerase E protein-coding 179.167-3 chr1 181519209 181519972 + 0.333333 NA intron (NM_001205293, intron 3 of 47) MIRb|SINE|MIR 36073 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 133.833-2 chr1 165819795 165820271 + 0.333333 NA Intergenic AluJb|SINE|Alu -7581 NM_012474 7371 Hs.458360 NM_012474 ENSG00000143179 UCK2 TSA903|UK|UMPK uridine-cytidine kinase 2 protein-coding 138.833-39 chr2 154102468 154103167 + 0.333333 NA intron (NM_052917, intron 3 of 12) L1PB4|LINE|L1 158423 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 137.833-37 chr5 65523376 65523826 + 0.333333 NA intron (NM_001349369, intron 9 of 10) intron (NM_001349369, intron 9 of 10) 39567 NM_001349369 64105 Hs.529778 NM_022145 ENSG00000123219 CENPK AF5alpha|CENP-K|FKSG14|P33|Solt centromere protein K protein-coding 118-48 chr17 70065384 70065798 + 0.333333 NA intron (NR_104129, intron 2 of 2) intron (NR_104129, intron 2 of 2) -9634 NM_018658 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 137.5-30 chr14 67697345 67697953 + 0.333333 NA Intergenic MIR|SINE|MIR -1885 NM_001252650 51109 Hs.719925 NM_016026 ENSG00000072042 RDH11 ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|RDJCSS|SCALD|SDR7C1 retinol dehydrogenase 11 protein-coding 130.667-45 chr21 30905732 30906260 + 0.333333 NA Intergenic L1ME3|LINE|L1 -24416 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 125.5-15 chr12 26603498 26604051 + 0.333333 NA intron (NM_002223, intron 26 of 56) intron (NM_002223, intron 26 of 56) 229420 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 130-39 chr15 76806083 76806818 + 0.333333 NA intron (NR_148227, intron 5 of 32) L1MB7|LINE|L1 55494 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 125.333-34 chr12 84674247 84674762 + 0.333333 NA Intergenic Intergenic 238295 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 115.667-54 chr2 101845951 101846441 + 0.333333 NA intron (NM_145686, intron 12 of 30) intron (NM_145686, intron 12 of 30) -137269 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 123.5-16 chr11 107824769 107825213 + 0.333333 NA intron (NM_017515, intron 1 of 7) MER3|DNA|hAT-Charlie 33796 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 121.333-65 chr3 94758876 94759472 + 0.333333 NA Intergenic Intergenic -179089 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 117.167-39 chr2 55045671 55046262 + 0.333333 NA intron (NM_001321904, intron 2 of 9) intron (NM_001321904, intron 2 of 9) 1360 NM_001321863 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 113.333-6 chr1 107306807 107307321 + 0.333333 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 158995 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 142.5-66 chr7 43744382 43745223 + 0.333333 NA Intergenic L1MC5a|LINE|L1 -13871 NM_001253823 644 Hs.488143 NM_000712 ENSG00000106605 BLVRA BLVR|BVR|BVRA biliverdin reductase A protein-coding 119-44 chr17 59014318 59014846 + 0.333333 NA intron (NR_148346, intron 21 of 23) intron (NR_148346, intron 21 of 23) 92298 NR_148346 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 128.5-45 chr20 50865160 50865668 + 0.333333 NA intron (NM_198799, intron 4 of 4) intron (NM_198799, intron 4 of 4) 44377 NM_001282532 23394 Hs.293736 NM_015339 ENSG00000101126 ADNP ADNP1|HVDAS|MRD28 activity dependent neuroprotector homeobox protein-coding 135.833-75 chrX 83375730 83376380 + 0.333333 NA Intergenic L1PB1|LINE|L1 -132235 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 144.333-35 chr15 91314759 91315466 + 0.333333 NA Intergenic Intergenic -148227 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 122.667-54 chr20 57765409 57766098 + 0.333333 NA Intergenic L1MEf|LINE|L1 -54217 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 125-102 chr9 14534030 14534474 + 0.333333 NA Intergenic Intergenic -2175 NM_001369458 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 171.667-38 chr2 78193813 78194707 + 0.333333 NA intron (NR_110288, intron 1 of 3) L1MA6|LINE|L1 96471 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 128.5-76 chr7 104434521 104435121 + 0.333333 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 106165 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 146.333-94 chr8 41979313 41979994 + 0.333333 NA intron (NM_001305878, intron 5 of 13) intron (NM_001305878, intron 5 of 13) -72097 NR_136589 105379393 Hs.742878 NR_136589 LOC105379393 - uncharacterized LOC105379393 ncRNA 115.167-102 chr8 32410684 32411250 + 0.333333 NA intron (NM_013962, intron 1 of 4) AluSc|SINE|Alu -29779 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 113.334 chr14 69673117 69673764 + 0.333333 NA intron (NM_014734, intron 2 of 5) intron (NM_014734, intron 2 of 5) 61844 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 114.667-77 chr3 77644866 77645486 + 0.333333 NA intron (NM_001290039, intron 26 of 26) intron (NM_001290039, intron 26 of 26) 403787 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 117.833-51 chr3 107868769 107869361 + 0.333333 NA intron (NR_024276, intron 3 of 7) intron (NR_024276, intron 3 of 7) 9003 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 126.667-76 chr5 58739014 58739451 + 0.333333 NA intron (NM_138453, intron 3 of 4) intron (NM_138453, intron 3 of 4) 156157 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 141.667-4 chr1 105298843 105299518 + 0.333333 NA Intergenic L1M1|LINE|L1 319755 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 116.5-52 chr3 90360170 90360760 + 0.333333 NA Intergenic ALR/Alpha|Satellite|centr 1252844 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 163.333-82 chr8 134921356 134921963 + 0.333333 NA Intergenic MER58B|DNA|hAT-Charlie 71724 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 116.167-31 chr18 4784519 4785030 + 0.333333 NA Intergenic L1MA9|LINE|L1 -296408 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 147.833-36 chr2 114260003 114260492 + 0.333333 NA Intergenic Intergenic -182394 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 159.167-54 chr5 28657519 28658072 + 0.333333 NA Intergenic Intergenic -269075 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 117.667-26 chr11 65849426 65849921 + 0.333333 NA intron (NM_152760, intron 2 of 12) intron (NM_152760, intron 2 of 12) 8507 NM_005507 1072 Hs.170622 NM_005507 ENSG00000172757 CFL1 CFL|HEL-S-15|cofilin cofilin 1 protein-coding 130-89 chr6 134131171 134131627 + 0.333333 NA Intergenic Intergenic -13719 NR_037938 387065 Hs.571061 NR_037938 HMGA1P7 HMGA1L7 high mobility group AT-hook 1 pseudogene 7 pseudo 140.833-66 chrX 38004427 38005045 + 0.333333 NA Intergenic L1MA2|LINE|L1 -1817 NM_138780 94122 Hs.662334 NM_138780 ENSG00000147041 SYTL5 slp5 synaptotagmin like 5 protein-coding 121.333-35 chr16 75935627 75936087 + 0.333333 NA Intergenic MLT1B|LTR|ERVL-MaLR -209367 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 120.333-10 chr1 117155742 117156327 + 0.333333 NA intron (NM_001253850, intron 2 of 4) L2c|LINE|L2 -34285 NM_025188 80263 Hs.301526 NM_025188 ENSG00000134253 TRIM45 RNF99 tripartite motif containing 45 protein-coding 118.333-13 chr11 19304895 19305405 + 0.333333 NA Intergenic MLT1D|LTR|ERVL-MaLR -45574 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 121.333-26 chr14 47821875 47822513 + 0.333333 NA Intergenic L1MA3|LINE|L1 -27180 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 145.834-5 chr3 96065570 96066433 + 0.333333 NA Intergenic Intergenic -293963 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 115.167-40 chr15 95117499 95118134 + 0.333333 NA Intergenic MSTA|LTR|ERVL-MaLR 209284 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 116.667-109 chr8 120974698 120975203 + 0.333333 NA Intergenic MER5B|DNA|hAT-Charlie -162904 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 116-45 chr2 31870048 31870571 + 0.333333 NA intron (NR_126032, intron 5 of 6) intron (NR_126032, intron 5 of 6) -66329 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 138.167-50 chr3 20555636 20556377 + 0.333333 NA Intergenic L2a|LINE|L2 213538 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 113.5-97 chrX 118893212 118893654 + 0.333333 NA Intergenic Intergenic 53877 NR_110393 101928287 Hs.496647 NR_110393 ENSG00000203650 LINC01285 - long intergenic non-protein coding RNA 1285 ncRNA 125-15 chr10 107690042 107690548 + 0.333333 NA Intergenic Intergenic 378998 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 172.667-22 chr14 44624026 44624671 + 0.333333 NA Intergenic L1MEg|LINE|L1 116939 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 151.833-4 chr1 235837902 235838483 + 0.333333 NA intron (NR_102436, intron 1 of 3) L2a|LINE|L2 14868 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 146.833-42 chr3 111735574 111736176 + 0.333333 NA intron (NM_001185106, intron 4 of 4) MIRb|SINE|MIR 3379 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 150.667-80 chr6 39008645 39009186 + 0.333333 NA exon (NM_001206927, exon 89 of 93) exon (NM_001206927, exon 89 of 93) -39866 NM_002062 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 115.5 chr1 22309948 22310500 + 0.333333 NA Intergenic L1ME1|LINE|L1 43985 NR_039613 100616433 NR_039613 ENSG00000266564 MIR4418 - microRNA 4418 ncRNA 120.5-92 chr9 115052409 115053028 + 0.333333 NA intron (NM_002160, intron 15 of 27) intron (NM_002160, intron 15 of 27) 65439 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 129.5-39 chr19 37828852 37829415 + 0.333333 NA intron (NR_040015, intron 4 of 5) intron (NR_040015, intron 4 of 5) 11722 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 127.834-2 chr18 59606799 59607476 + 0.333333 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 90286 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 123.167-46 chr2 34460576 34461101 + 0.333333 NA Intergenic L1MA2|LINE|L1 -216719 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 126.834-5 chr7 90275476 90276203 + 0.333333 NA intron (NM_001039706, intron 9 of 22) AluY|SINE|Alu 30665 NM_001039706 79846 Hs.521014 NM_024788 ENSG00000105792 CFAP69 C7orf63|FAP69|SPGF24 cilia and flagella associated protein 69 protein-coding 127-85 chr6 45557573 45558013 + 0.333333 NA Intergenic MIRb|SINE|MIR 135518 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 123-89 chr8 141555295 141556014 + 0.333333 NA Intergenic Intergenic -48424 NR_102363 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 117.667-39 chr13 100482564 100483213 + 0.333333 NA intron (NR_148027, intron 22 of 23) intron (NR_148027, intron 22 of 23) -1873 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 119.333-15 chr11 11042830 11043422 + 0.333333 NA Intergenic L1MC5|LINE|L1 184909 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 139.5-5 chr1 187085295 187085983 + 0.333333 NA Intergenic Intergenic -7203 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 116.667-8 chr1 203091954 203092416 + 0.333333 NA Intergenic Intergenic -6173 NM_002479 4656 Hs.2830 NM_002479 ENSG00000122180 MYOG MYF4|bHLHc3|myf-4 myogenin protein-coding 132.833-49 chr3 140498693 140499215 + 0.333333 NA intron (NM_022131, intron 8 of 16) intron (NM_022131, intron 8 of 16) 9835 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 156.5-9 chr1 192806369 192806923 + 0.333333 NA Intergenic Intergenic -2393 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G protein signaling 2 protein-coding 131.833-19 chr15 63627842 63628364 + 0.333333 NA intron (NM_003922, intron 70 of 77) intron (NM_003922, intron 70 of 77) -27276 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 123.5-91 chrX 42946179 42946780 + 0.333333 NA Intergenic Intergenic -168316 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 146.834-4 chr5 135061692 135062483 + 0.333333 NA intron (NR_161235, intron 2 of 5) MER96B|DNA|hAT-Tip100 -22040 NR_105050 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 Epist C5orf66 antisense RNA 1 ncRNA 123.834-3 chr17 75430220 75430898 + 0.333333 NA Intergenic Intergenic 24490 NR_037449 100500841 NR_037449 ENSG00000264511 MIR3678 mir-3678 microRNA 3678 ncRNA 121.167-8 chr1 100507483 100508059 + 0.333333 NA intron (NM_001319210, intron 16 of 16) AluSx|SINE|Alu -30368 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 118.833-4 chr1 194740274 194740787 + 0.333333 NA Intergenic Intergenic 1348185 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 120.833-65 chr7 115726069 115726613 + 0.333333 NA Intergenic AluSx3|SINE|Alu -144900 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 149.833-28 chr3 146212420 146212869 + 0.333333 NA intron (NM_001128306, intron 3 of 6) L1MB7|LINE|L1 37971 NM_001128305 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 135.5-10 chr10 16473890 16474450 + 0.333333 NA intron (NM_030664, intron 2 of 5) Tigger18a|DNA|TcMar-Tigger 37227 NM_001261837 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 124.833-74 chr5 42507600 42508062 + 0.333333 NA intron (NM_001242401, intron 2 of 10) LTR33|LTR|ERVL -40212 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 132.5-95 chr8 35651854 35652469 + 0.333333 NA intron (NM_001322818, intron 4 of 16) intron (NM_001322818, intron 4 of 16) 58159 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 138.833-86 chrX 84415620 84416036 + 0.333333 NA intron (NM_001177478, intron 4 of 9) intron (NM_001177478, intron 4 of 9) 86625 NM_144657 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 163-57 chr7 33254029 33254806 + 0.333333 NA intron (NM_198428, intron 5 of 22) L1MA9|LINE|L1 124853 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 119.833-46 chr2 204653670 204654307 + 0.333333 NA intron (NM_205863, intron 1 of 21) Charlie24|DNA|hAT-Charlie 108513 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 146.667-63 chr3 97645327 97645893 + 0.333333 NA intron (NM_001080448, intron 14 of 17) L1PA2|LINE|L1 -118911 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 127.5-42 chr3 34110535 34111164 + 0.333333 NA Intergenic MIRc|SINE|MIR 312219 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 127-74 chr4 16499737 16500317 + 0.333333 NA Intergenic LTR16A1|LTR|ERVL 273364 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 138.667-39 chr17 50761928 50762696 + 0.333333 NA intron (NM_001358683, intron 3 of 3) intron (NM_001358683, intron 3 of 3) 5206 NM_001358683 55018 Hs.389460 NM_017928 ENSG00000167117 ANKRD40CL C17orf73|LINC00483 ANKRD40 C-terminal like protein-coding 151.5-34 chr2 36424750 36425449 + 0.333333 NA intron (NM_016441, intron 2 of 16) intron (NM_016441, intron 2 of 16) 69321 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 138.333-10 chr1 164524386 164524977 + 0.333333 NA Intergenic Intergenic -34679 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 117-81 chr4 98111203 98111875 + 0.333333 NA intron (NM_174952, intron 3 of 10) intron (NM_174952, intron 3 of 10) 31937 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 146.5-9 chr10 52209561 52210070 + 0.333333 NA intron (NM_001098512, intron 9 of 17) L2c|LINE|L2 104313 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 119.5-4 chr1 28310113 28310619 + 0.333333 NA Intergenic AluSc|SINE|Alu -18674 NM_017638 54797 Hs.479911 NM_017638 ENSG00000130772 MED18 SRB5|p28b mediator complex subunit 18 protein-coding 133.167-55 chr6 113457332 113458067 + 0.333333 NA Intergenic Intergenic -24252 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 143.834-3 chr2 60165798 60166615 + 0.333333 NA Intergenic Intergenic 216830 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 120-65 chr20 40957889 40958523 + 0.333333 NA Intergenic AluSx|SINE|Alu -22507 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 124.834 chr17 38953805 38954506 + 0.333333 NA intron (NM_001008777, intron 5 of 10) AluSx1|SINE|Alu 13248 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 125-41 chr2 31980215 31980773 + 0.333333 NA intron (NR_126034, intron 1 of 6) intron (NR_126034, intron 1 of 6) 30170 NM_001137602 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 114.333-105 chr5 144875344 144875804 + 0.333333 NA Intergenic L2a|LINE|L2 670183 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 126-77 chr5 113956388 113956816 + 0.333333 NA Intergenic L1MA4|LINE|L1 -405468 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 139.667-30 chr15 85929538 85930194 + 0.333333 NA Intergenic L1ME1|LINE|L1 104231 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 117.334-3 chr2 195474181 195474867 + 0.333333 NA Intergenic MER63B|DNA|hAT-Blackjack -182434 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 115.833-51 chr4 46432414 46432897 + 0.333333 NA Intergenic MLT1L|LTR|ERVL-MaLR -42527 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 121.667-16 chr11 90806453 90807126 + 0.333333 NA intron (NR_104190, intron 4 of 6) AluJo|SINE|Alu 62413 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 146.833-26 chr19 39606588 39607246 + 0.333333 NA intron (NM_013268, intron 3 of 3) L2b|LINE|L2 4393 NM_013268 29124 Hs.23671 NM_013268 ENSG00000105198 LGALS13 GAL13|PLAC8|PP13 galectin 13 protein-coding 135.333-89 chr8 117800634 117801202 + 0.333333 NA intron (NM_000127, intron 10 of 10) intron (NM_000127, intron 10 of 10) 119995 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 126-50 chr2 233298551 233299085 + 0.333333 NA Intergenic Intergenic -8998 NM_000541 6295 Hs.32721 NM_000541 ENSG00000130561 SAG RP47|S-AG S-antigen visual arrestin protein-coding 126.5-77 chr5 147672380 147673124 + 0.333333 NA intron (NM_001270934, intron 1 of 20) L2c|LINE|L2 109976 NM_001282282 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 128.333-25 chr12 63015555 63016096 + 0.333333 NA Intergenic Intergenic -80675 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 118.167-23 chr16 3796193 3796842 + 0.333333 NA intron (NM_004380, intron 3 of 30) AluSx1|SINE|Alu -78993 NM_001272049 10131 Hs.30345 NM_016292 ENSG00000126602 TRAP1 HSP 75|HSP75|HSP90L|TRAP-1 TNF receptor associated protein 1 protein-coding 117-7 chr1 117372307 117372796 + 0.333333 NA intron (NM_006699, intron 1 of 12) intron (NM_006699, intron 1 of 12) 5102 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 124.167-21 chr13 34388306 34388972 + 0.333333 NA intron (NR_146542, intron 1 of 3) intron (NR_146542, intron 1 of 3) 40596 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 118.167-3 chr1 205803849 205804478 + 0.333333 NA intron (NM_173854, intron 2 of 10) intron (NM_173854, intron 2 of 10) 9035 NM_173854 254428 Hs.20274 NM_173854 ENSG00000133065 SLC41A1 MgtE solute carrier family 41 member 1 protein-coding 129.834-3 chr17 59920478 59921242 + 0.333333 NA intron (NR_161455, intron 4 of 13) AluSz|SINE|Alu 27739 NR_161457 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 113.167-15 chr11 113248677 113249103 + 0.333333 NA intron (NM_001076682, intron 16 of 18) intron (NM_001076682, intron 16 of 18) 25011 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 136-72 chr5 128011644 128012339 + 0.333333 NA intron (NR_152803, intron 1 of 1) intron (NR_152803, intron 1 of 1) 71184 NR_152800 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 117.833-31 chr16 5037629 5038033 + 0.333333 NA intron (NR_038913, intron 1 of 1) intron (NR_038913, intron 1 of 1) -3896 NM_016256 51172 Hs.21334 NM_016256 ENSG00000103174 NAGPA APAA|UCE N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase protein-coding 117.667-129 chr9 17366176 17366757 + 0.333333 NA intron (NM_001365029, intron 12 of 25) intron (NM_001365029, intron 12 of 25) -212600 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 115.333-87 chr5 155358317 155358753 + 0.333333 NA Intergenic L1PA15|LINE|L1 344780 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 142-43 chr2 64315177 64315795 + 0.333333 NA Intergenic Intergenic -25273 NR_039632 100616265 NR_039632 ENSG00000283222 MIR4433A MIR4433|hsa-mir-4433a microRNA 4433a ncRNA 150.167-35 chr2 207642132 207642691 + 0.333333 NA Intergenic AluY|SINE|Alu -16358 NM_001330132 151194 Hs.664764 NM_145280 ENSG00000144401 METTL21A FAM119A|HCA557b|HSPA-KMT methyltransferase like 21A protein-coding 117.667-67 chr2 146713342 146713867 + 0.333333 NA Intergenic L1PA13|LINE|L1 126547 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 124.333-18 chr12 26926338 26926987 + 0.333333 NA intron (NM_018164, intron 5 of 16) MER21C|LTR|ERVL 11319 NM_018164 55726 Hs.505077 NM_018164 ENSG00000064102 INTS13 ASUN|C12orf11|GCT1|Mat89Bb|NET48|SPATA30 integrator complex subunit 13 protein-coding 139-5 chr11 61201183 61201669 + 0.333333 NA Intergenic LTR12D|LTR|ERV1 -2089 NM_001079807 643834 Hs.601055 NM_001079807 ENSG00000229859 PGA3 - pepsinogen 3, group I (pepsinogen A) protein-coding 146.667-9 chr1 212815299 212816036 + 0.333333 NA 3' UTR (NM_001042553, exon 10 of 10) 3' UTR (NM_001042553, exon 10 of 10) 23773 NM_001042552 128387 Hs.530538 NM_001042552 ENSG00000203705 TATDN3 - TatD DNase domain containing 3 protein-coding 227.5-36 chr9 128970109 128971087 + 0.333333 NA intron (NM_015354, intron 10 of 43) intron (NM_015354, intron 10 of 43) -22865 NM_014908 22845 Hs.531563 NM_014908 ENSG00000175283 DOLK CDG1M|DK|DK1|SEC59|TMEM15 dolichol kinase protein-coding 121.5-88 chr6 49480704 49481171 + 0.333333 NA intron (NM_018132, intron 5 of 8) intron (NM_018132, intron 5 of 8) 17567 NM_018132 55166 Hs.88663 NM_018132 ENSG00000031691 CENPQ C6orf139|CENP-Q centromere protein Q protein-coding 126.667-43 chr2 188700601 188701232 + 0.333333 NA Intergenic Intergenic 89207 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 143.333-21 chr14 70107925 70108498 + 0.333333 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -27994 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 156.334-2 chr4 54413565 54414410 + 0.333333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 81095 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 124.5-29 chr17 45202272 45202913 + 0.333333 NA intron (NR_147507, intron 2 of 2) AluY|SINE|Alu 19173 NR_147507 339192 Hs.560498 NR_147507 ENSG00000267121 LOC339192 - uncharacterized LOC339192 ncRNA 149.667-18 chr14 32757694 32758291 + 0.333333 NA intron (NM_004274, intron 11 of 13) intron (NM_004274, intron 11 of 13) -180887 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 127-95 chr7 108789895 108790333 + 0.333333 NA Intergenic L1PA15|LINE|L1 94473 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 122.167-46 chr3 96113313 96113679 + 0.333333 NA Intergenic L1MB8|LINE|L1 -246468 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 113.333-84 chr4 134384062 134384554 + 0.333333 NA Intergenic LTR1D|LTR|ERV1 -39560 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 113.667-55 chr18 3513376 3513887 + 0.333333 NA intron (NM_001242762, intron 7 of 9) intron (NM_001242762, intron 7 of 9) 47381 NR_110429 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 119.667-43 chr2 80941938 80942384 + 0.333333 NA Intergenic Intergenic 524785 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 123.833-39 chr3 44472156 44472689 + 0.333333 NA intron (NM_181489, intron 1 of 7) BC200|scRNA|scRNA 5248 NM_001369454 353274 Hs.250481 NM_181489 ENSG00000185219 ZNF445 ZKSCAN15|ZNF168|ZSCAN47 zinc finger protein 445 protein-coding 117.667-80 chr3 115692854 115693424 + 0.333333 NA intron (NM_002045, intron 2 of 2) intron (NM_002045, intron 2 of 2) 69629 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 172.167-41 chr5 93122186 93122917 + 0.333333 NA Intergenic Intergenic 448792 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 134-14 chr10 25820362 25820817 + 0.333333 NA Intergenic Intergenic 113121 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 118.5-46 chr18 50747701 50748112 + 0.333333 NA Intergenic MER57E1|LTR|ERV1 72110 NM_001369511 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 141.667-37 chr17 49559151 49559954 + 0.333333 NA intron (NR_103773, intron 1 of 2) L1MC3|LINE|L1 14512 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 147.333-5 chr1 182987956 182988464 + 0.333333 NA Intergenic L3|LINE|CR1 -35044 NM_001345928 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 120.333-94 chr5 46265669 46266096 + 0.333333 NA Intergenic ALR/Alpha|Satellite|centr -569502 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 115-88 chr9 95986881 95987374 + 0.333333 NA intron (NM_020207, intron 17 of 18) THE1B|LTR|ERVL-MaLR 34684 NR_024129 100188953 Hs.434310 NR_024129 ENSG00000225194 LINC00092 NCRNA00092 long intergenic non-protein coding RNA 92 ncRNA 159-15 chr12 6409701 6410587 + 0.333333 NA Intergenic L1ME3|LINE|L1 25982 NM_002342 4055 Hs.1116 NM_002342 ENSG00000111321 LTBR D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3 lymphotoxin beta receptor protein-coding 149.667-9 chr10 25218824 25219570 + 0.333333 NA intron (NM_020752, intron 1 of 10) intron (NM_020752, intron 1 of 10) -42921 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 124.5-32 chr2 25475876 25476329 + 0.333333 NA intron (NM_033147, intron 10 of 19) AluSq2|SINE|Alu -133512 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 136.334-2 chr18 73565611 73566357 + 0.333333 NA Intergenic Intergenic 241043 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 114.167-26 chr13 19325926 19326368 + 0.333333 NA intron (NR_027248, intron 6 of 20) L1M2|LINE|L1 18826 NR_027248 100101938 Hs.129283 NR_027248 ANKRD26P3 LINC00414 ankyrin repeat domain 26 pseudogene 3 pseudo 129.167-50 chr3 112991852 112992497 + 0.333333 NA intron (NM_138485, intron 1 of 4) intron (NM_138485, intron 1 of 4) 1190 NM_014170 29083 Hs.127496 NM_014170 ENSG00000163607 GTPBP8 HSPC135 GTP binding protein 8 (putative) protein-coding 117.333-82 chr4 132437532 132438073 + 0.333333 NA Intergenic Intergenic -153287 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 191-47 chr5 62399302 62400006 + 0.333333 NA intron (NM_001348077, intron 3 of 11) AluSx1|SINE|Alu 4251 NM_014473 27292 Hs.731665 NM_014473 ENSG00000086189 DIMT1 DIM1|DIMT1L|HSA9761|HUSSY5 DIMT1 rRNA methyltransferase and ribosome maturation factor protein-coding 127.667-42 chr2 100593065 100593644 + 0.333333 NA Intergenic Tigger1|DNA|TcMar-Tigger -10385 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 125.667-72 chr22 26302764 26303241 + 0.333333 NA intron (NM_001184776, intron 5 of 14) MIRb|SINE|MIR -126258 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 151.333-16 chr11 33350608 33351286 + 0.333333 NA intron (NM_001278162, intron 13 of 15) intron (NM_001278162, intron 13 of 15) -25161 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 159.5-12 chr13 31942739 31943591 + 0.333333 NA intron (NR_027062, intron 1 of 3) intron (NR_027062, intron 1 of 3) 88474 NR_103839 100507099 Hs.536364 NR_103839 FRY-AS1 - FRY antisense RNA 1 ncRNA 171.167-40 chr4 106012493 106013062 + 0.333333 NA intron (NR_125928, intron 3 of 3) AluYa5|SINE|Alu 9701 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 122.333-22 chr11 109037358 109037726 + 0.333333 NA Intergenic Intergenic 372473 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 120-117 chrX 151769548 151770061 + 0.333333 NA Intergenic L1PA11|LINE|L1 35058 NM_005140 1260 Hs.447360 NM_005140 ENSG00000183862 CNGA2 CNCA|CNCA1|CNG2|OCNC1|OCNCALPHA|OCNCa cyclic nucleotide gated channel alpha 2 protein-coding 137-90 chr7 109202748 109203428 + 0.333333 NA Intergenic Intergenic -318501 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 141.5-71 chr5 36448742 36449469 + 0.333333 NA Intergenic MIRb|SINE|MIR -147203 NM_001323276 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 164.667-75 chr8 119060763 119061648 + 0.333333 NA intron (NM_001324095, intron 3 of 7) HAL1|LINE|L1 -6042 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 166.167 chr1 52915334 52916138 + 0.333333 NA intron (NM_001319958, intron 1 of 9) MLT1E1A|LTR|ERVL-MaLR 6004 NM_001198961 55268 Hs.476319 NM_018281 ENSG00000121310 ECHDC2 - enoyl-CoA hydratase domain containing 2 protein-coding 120.5-69 chr5 25867114 25867629 + 0.333333 NA Intergenic Intergenic 676418 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 134-28 chr12 56882540 56883283 + 0.333333 NA Intergenic MER11A|LTR|ERVK 51497 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 140.167-8 chr11 38133393 38133949 + 0.333333 NA Intergenic L1PA8|LINE|L1 195070 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 118.5-50 chr2 47817584 47818025 + 0.333333 NA intron (NM_025133, intron 16 of 22) Tigger1|DNA|TcMar-Tigger 33849 NM_001281494 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 126-96 chr8 86716142 86716686 + 0.333333 NA intron (NM_019098, intron 3 of 17) L1MA5A|LINE|L1 27261 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 132.833-37 chr2 215323044 215323650 + 0.333333 NA intron (NM_004044, intron 4 of 15) L1MB8|LINE|L1 11288 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 116-31 chr15 94750020 94750467 + 0.333333 NA Intergenic Intergenic -105120 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 116.333-4 chr1 69252660 69253181 + 0.333333 NA Intergenic Intergenic -180335 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 135-16 chr11 47788620 47789349 + 0.333333 NA intron (NM_015231, intron 29 of 35) AluSx|SINE|Alu -21643 NM_001318339 23360 Hs.6834 NM_015308 ENSG00000109920 FNBP4 FBP30 formin binding protein 4 protein-coding 127.167-16 chr10 71388202 71388951 + 0.333333 NA Intergenic L1MEg|LINE|L1 -8344 NM_022124 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 126.334-5 chr2 187410414 187411110 + 0.333333 NA intron (NM_005795, intron 1 of 14) intron (NM_005795, intron 1 of 14) 37490 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 194.5-25 chr4 36308320 36308991 + 0.333333 NA intron (NM_001170700, intron 7 of 9) intron (NM_001170700, intron 7 of 9) 27039 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 145.167-60 chr6 8261742 8262228 + 0.333333 NA Intergenic Intergenic -159390 NR_037618 100526837 Hs.719272 NR_037618 EEF1E1-BLOC1S5 EEF1E1-MUTED EEF1E1-BLOC1S5 readthrough (NMD candidate) ncRNA 139.5-11 chr10 82947004 82947637 + 0.333333 NA intron (NR_163253, intron 6 of 10) L1ME1|LINE|L1 -714400 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 130.167-42 chr21 28992023 28992515 + 0.333333 NA intron (NM_015565, intron 1 of 29) L2a|LINE|L2 608 NM_015565 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 145.5-12 chr12 54212854 54213708 + 0.333333 NA Intergenic Intergenic 18195 NR_039851 100616400 NR_039851 ENSG00000283803 MIR3198-2 mir-3198-2 microRNA 3198-2 ncRNA 144.167-67 chr6 45791605 45792231 + 0.333333 NA Intergenic Intergenic 145679 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 145-78 chr7 27825271 27825859 + 0.333333 NA intron (NM_001362794, intron 15 of 16) intron (NM_001362794, intron 15 of 16) 85470 NM_001079864 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 118.5-39 chr17 7774540 7775135 + 0.333333 NA exon (NM_020877, exon 29 of 86) exon (NM_020877, exon 29 of 86) 20517 NR_002778 118432 Hs.658086 NR_002778 ENSG00000240480 RPL29P2 RPL29_10_1510 ribosomal protein L29 pseudogene 2 pseudo 113.167-68 chr6 99550129 99550721 + 0.333333 NA intron (NM_001363537, intron 7 of 12) intron (NM_001363537, intron 7 of 12) 18235 NM_005190 892 Hs.430646 NM_005190 ENSG00000112237 CCNC CycC|SRB11|hSRB11 cyclin C protein-coding 122.333-119 chr9 32771914 32772447 + 0.333333 NA Intergenic L1M4c|LINE|L1 -11360 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 113.667-62 chr2 55885384 55886025 + 0.333333 NA intron (NM_001039349, intron 4 of 10) intron (NM_001039349, intron 4 of 10) 38078 NM_001039348 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 137.667-80 chr5 27139681 27140180 + 0.333333 NA Intergenic L1MC2|LINE|L1 -101344 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 133.167 chr1 35526501 35527025 + 0.333333 NA intron (NM_024874, intron 2 of 20) L1MA4A|LINE|L1 30640 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR|AAVRL KIAA0319 like protein-coding 157.333-25 chr15 49257394 49257974 + 0.333333 NA intron (NM_001289030, intron 6 of 10) intron (NM_001289030, intron 6 of 10) 87437 NM_002044 2585 Hs.122006 NM_002044 ENSG00000156958 GALK2 GK2 galactokinase 2 protein-coding 113.667-8 chr1 193770810 193771354 + 0.333333 NA Intergenic MLT1D|LTR|ERVL-MaLR 466337 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 123.333-72 chr3 47758739 47759179 + 0.333333 NA intron (NM_003074, intron 2 of 27) AluSp|SINE|Alu 22934 NM_003074 6599 Hs.476179 NM_003074 ENSG00000173473 SMARCC1 BAF155|CRACC1|Rsc8|SRG3|SWI3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 protein-coding 124.167-15 chr12 9737571 9738044 + 0.333333 NA Intergenic HAL1|LINE|L1 -4508 NM_001267701 160365 Hs.560087 NM_172004 ENSG00000184293 CLECL1 DCAL-1|DCAL1 C-type lectin like 1 protein-coding 132.833-34 chr2 110114776 110115285 + 0.333333 NA intron (NM_005434, intron 1 of 3) intron (NM_005434, intron 1 of 3) 1536 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 145.167-63 chr6 107582913 107583706 + 0.333333 NA intron (NM_018013, intron 4 of 6) L2b|LINE|L2 93192 NM_018013 55084 Hs.445244 NM_018013 ENSG00000112320 SOBP JXC1|MRAMS sine oculis binding protein homolog protein-coding 122.834-2 chr2 227680105 227680778 + 0.333333 NA Intergenic AluSx4|SINE|Alu 26215 NM_001371412 114.667-12 chr11 14538015 14538608 + 0.333333 NA intron (NM_148976, intron 2 of 10) intron (NM_148976, intron 2 of 10) -17866 NM_001143937 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 149-33 chr19 2331954 2332800 + 0.333333 NA intron (NM_001077238, intron 1 of 14) intron (NM_001077238, intron 1 of 14) 3693 NM_001077238 56928 Hs.744026 NM_152988 ENSG00000005206 SPPL2B IMP-4|IMP4|PSH4|PSL1 signal peptide peptidase like 2B protein-coding 133.833-7 chr10 51095639 51096219 + 0.333333 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 21442 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 143.5-64 chr5 62603681 62604360 + 0.333333 NA intron (NM_016338, intron 29 of 29) Tigger3a|DNA|TcMar-Tigger 25201 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 165.5-61 chr8 103892387 103893226 + 0.333333 NA intron (NM_001282881, intron 2 of 20) AluSx|SINE|Alu 73586 NM_001348502 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 208.833-28 chr5 118891057 118891936 + 0.333333 NA intron (NM_001308081, intron 4 of 5) intron (NM_001308081, intron 4 of 5) -83090 NR_036263 100422872 NR_036263 ENSG00000283429 MIR1244-3 - microRNA 1244-3 ncRNA 129.667-111 chr9 134261705 134262405 + 0.333333 NA Intergenic Intergenic 33342 NR_146518 105376310 Hs.573484 NR_146518 ENSG00000223729 LINC02247 - long intergenic non-protein coding RNA 2247 ncRNA 119.333-27 chr14 47667338 47667920 + 0.333333 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 7325 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 117.667-66 chr2 124020507 124020959 + 0.333333 NA intron (NR_147976, intron 1 of 2) intron (NR_147976, intron 1 of 2) 4441 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 121.333-18 chr11 95154499 95155138 + 0.333333 NA intron (NR_110303, intron 1 of 2) intron (NR_110303, intron 1 of 2) 4279 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 117.167-46 chr2 124133124 124133724 + 0.333333 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 108137 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 125.167-80 chr8 121774495 121775052 + 0.333333 NA Intergenic Intergenic -133333 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 120.5-4 chr1 181851512 181852227 + 0.333333 NA Intergenic L1PA8A|LINE|L1 209843 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 170.333-30 chr16 52981799 52982502 + 0.333333 NA Intergenic L1MC5|LINE|L1 70723 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 125.167-19 chr13 112076403 112077012 + 0.333333 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) 9558 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 137.5-49 chr2 193113095 193113797 + 0.333333 NA Intergenic Intergenic 363601 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 122.5-14 chr10 76048919 76049363 + 0.333333 NA intron (NM_001305581, intron 4 of 6) intron (NM_001305581, intron 4 of 6) 266380 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 114.833-6 chr1 161798065 161798667 + 0.333333 NA intron (NM_007348, intron 6 of 15) AluSz|SINE|Alu 32046 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 114.167-105 chrX 103165104 103165542 + 0.333333 NA Intergenic L1MC5a|LINE|L1 -49769 NM_001127688 56271 Hs.184736 NM_001080425 ENSG00000102409 BEX4 BEXL1 brain expressed X-linked 4 protein-coding 151-29 chr16 51788148 51788824 + 0.333333 NA Intergenic Intergenic 25967 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 118.333-45 chr16 83546259 83546840 + 0.333333 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) 38203 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 126-33 chr16 14238886 14239639 + 0.333333 NA intron (NM_001308142, intron 9 of 16) intron (NM_001308142, intron 9 of 16) 52576 NM_001365416 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 136.833-82 chr9 27266541 27267121 + 0.333333 NA intron (NR_026679, intron 10 of 16) AluJb|SINE|Alu 15962 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 118.667-59 chr2 67765666 67766056 + 0.333333 NA Intergenic Intergenic 59701 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 114.833-37 chr2 186104748 186105249 + 0.333333 NA Intergenic Intergenic -18681 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 114.833-78 chrX 16532469 16532910 + 0.333333 NA Intergenic Intergenic 94396 NR_039762 100616428 NR_039762 ENSG00000265144 MIR548AM - microRNA 548am ncRNA 141-22 chr14 37474444 37475087 + 0.333333 NA intron (NM_138731, intron 12 of 13) L1MC2|LINE|L1 120484 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 142.5-38 chr2 78869998 78870681 + 0.333333 NA Intergenic Intergenic -155363 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 118.833-49 chr21 28537300 28537802 + 0.333333 NA Intergenic Intergenic -1767 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 117.5-69 chr7 85810659 85811278 + 0.333333 NA Intergenic Intergenic 389846 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 139.667-27 chr14 83211691 83212210 + 0.333333 NA Intergenic L1ME1|LINE|L1 569318 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 114-8 chr1 173717216 173717745 + 0.333333 NA intron (NM_014458, intron 2 of 11) intron (NM_014458, intron 2 of 11) 2499 NM_014458 27252 Hs.495035 NM_014458 ENSG00000076321 KLHL20 KHLHX|KLEIP|KLHLX kelch like family member 20 protein-coding 114-51 chr18 71763099 71763458 + 0.333333 NA intron (NR_126324, intron 1 of 4) THE1B|LTR|ERVL-MaLR 18948 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 120.5-44 chr17 68374462 68375016 + 0.333333 NA intron (NM_001352899, intron 8 of 12) AluSx1|SINE|Alu -38884 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 135.833-16 chr14 58353167 58353862 + 0.333333 NA intron (NM_002892, intron 16 of 23) (CTTCTC)n|Simple_repeat|Simple_repeat -42416 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 120.833-48 chr3 102492820 102493249 + 0.333333 NA Intergenic L1PA17|LINE|L1 58019 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 163-12 chr11 8749225 8750139 + 0.333333 NA intron (NM_005418, intron 5 of 22) intron (NM_005418, intron 5 of 22) -19096 NR_120590 102724784 Hs.613276 NR_120590 LOC102724784 - uncharacterized LOC102724784 ncRNA 124.667-100 chr5 124590360 124591006 + 0.333333 NA Intergenic AluSp|SINE|Alu -152163 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 139.167-42 chr2 165855377 165855931 + 0.333333 NA Intergenic MER96B|DNA|hAT-Tip100 16287 NR_045375 100506124 Hs.709870 NR_045375 LOC100506124 - uncharacterized LOC100506124 ncRNA 154.667-47 chr3 117416975 117417867 + 0.333333 NA Intergenic Intergenic 273504 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 118.333-119 chr9 126846367 126846850 + 0.333333 NA Intergenic MIRb|SINE|MIR -14031 NM_001099270 403341 Hs.177633 NM_203482 ENSG00000177125 ZBTB34 ZNF918 zinc finger and BTB domain containing 34 protein-coding 161-53 chr5 137018808 137019413 + 0.333333 NA intron (NM_004598, intron 6 of 10) intron (NM_004598, intron 6 of 10) -109087 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 139.333-29 chr12 98730875 98731396 + 0.333333 NA intron (NM_001160, intron 25 of 25) MIR|SINE|MIR 85835 NM_181868 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 118.333-78 chr3 139198684 139199251 + 0.333333 NA Intergenic Intergenic 34555 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 146.833-7 chr10 93901782 93902423 + 0.333333 NA 3' UTR (NM_001134658, exon 3 of 3) 3' UTR (NM_001134658, exon 3 of 3) 8124 NR_144336 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 120.5-82 chr7 92160706 92161222 + 0.333333 NA intron (NM_001161528, intron 1 of 4) intron (NM_001161528, intron 1 of 4) 4312 NM_001161528 401387 Hs.671729 NM_001045475 ENSG00000240720 LRRD1 - leucine rich repeats and death domain containing 1 protein-coding 138-47 chr18 72735048 72735798 + 0.333333 NA Intergenic L1MEf|LINE|L1 117959 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 118.5-28 chr14 36761479 36761993 + 0.333333 NA intron (NM_001171170, intron 3 of 10) intron (NM_001171170, intron 3 of 10) 104168 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 156-49 chr3 7573438 7574236 + 0.333333 NA intron (NM_000844, intron 7 of 9) intron (NM_000844, intron 7 of 9) -38553 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 123-4 chr1 210460798 210461480 + 0.333333 NA intron (NM_001122834, intron 7 of 11) intron (NM_001122834, intron 7 of 11) 131773 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 117-34 chr15 84588842 84589323 + 0.333333 NA Intergenic AluSx1|SINE|Alu -11927 NM_017894 54993 Hs.594023 NM_017894 ENSG00000176371 ZSCAN2 ZFP29|ZNF854 zinc finger and SCAN domain containing 2 protein-coding 136.5-48 chr2 81975094 81975542 + 0.333333 NA Intergenic Intergenic -508372 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 120.833-55 chr5 11763105 11763651 + 0.333333 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 141068 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 115.167-29 chr12 126670979 126671540 + 0.333333 NA intron (NR_110034, intron 1 of 2) MIRc|SINE|MIR 19059 NR_110035 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 120-67 chr20 50482996 50483437 + 0.333333 NA Intergenic AluSx1|SINE|Alu -27105 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 165.167-42 chr5 77723612 77724168 + 0.333333 NA intron (NM_004607, intron 1 of 3) intron (NM_004607, intron 1 of 3) 52449 NM_001297738 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 124.833-66 chr4 41309999 41310547 + 0.333333 NA Intergenic MSTB|LTR|ERVL-MaLR -49334 NM_001289124 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 133-60 chr3 142463415 142464070 + 0.333333 NA intron (NM_001354579, intron 40 of 45) intron (NM_001354579, intron 40 of 45) -15680 NM_001282859 54464 Hs.435103 NM_019001 ENSG00000114127 XRN1 SEP1 5'-3' exoribonuclease 1 protein-coding 160.667-2 chr1 43165654 43166443 + 0.333333 NA intron (NM_006824, intron 7 of 8) intron (NM_006824, intron 7 of 8) 5664 NR_106791 102465439 NR_106791 ENSG00000284410 MIR6733 hsa-mir-6733 microRNA 6733 ncRNA 120.333-21 chr10 77958459 77959049 + 0.333333 NA Intergenic AluSg4|SINE|Alu 31942 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 152.667-26 chr14 27728116 27728922 + 0.333333 NA Intergenic Intergenic -55298 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 124.833-68 chr4 47417744 47418197 + 0.333333 NA intron (NM_000812, intron 8 of 8) intron (NM_000812, intron 8 of 8) 45732 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 125.5-82 chr8 117327736 117328266 + 0.333333 NA Intergenic Intergenic -192712 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 120.167-61 chr4 61061121 61061698 + 0.333333 NA Intergenic Intergenic -82247 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 121.167-68 chr5 64884231 64884687 + 0.333333 NA intron (NM_005869, intron 10 of 13) intron (NM_005869, intron 10 of 13) 115529 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 125.667-68 chr20 53406654 53407200 + 0.333333 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -145843 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 130.167-10 chr11 42842970 42843533 + 0.333333 NA Intergenic L3|LINE|CR1 426118 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 122-39 chr2 127682565 127683024 + 0.333333 NA Intergenic AluJo|SINE|Alu -1008 NM_001161404 55679 Hs.469881 NM_017980 ENSG00000072163 LIMS2 LGMD2W|MDRCMTT|PINCH-2|PINCH2 LIM zinc finger domain containing 2 protein-coding 160.5-35 chr3 140863669 140864230 + 0.333333 NA Intergenic Intergenic -77887 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 164.833-32 chr3 99683703 99684259 + 0.333333 NA intron (NM_001850, intron 2 of 4) (TTTG)n|Simple_repeat|Simple_repeat 45387 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 136.833-80 chr8 130544487 130544939 + 0.333333 NA Intergenic Intergenic -101039 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 130.167-45 chr22 48110552 48111251 + 0.333333 NA Intergenic L1MB7|LINE|L1 -163463 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 132-9 chr10 9063964 9064694 + 0.333333 NA Intergenic Intergenic 166340 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 165.167-17 chr16 87800603 87801144 + 0.333333 NA Intergenic MLT1C|LTR|ERVL-MaLR -21725 NR_120309 102724467 Hs.587857 NR_120309 LOC102724467 - uncharacterized LOC102724467 ncRNA 117.5-37 chr3 8549161 8549664 + 0.333333 NA intron (NM_014583, intron 4 of 5) L2c|LINE|L2 -22370 NR_024065 29931 Hs.433151 NM_013343 LINC00312 ERR-10|ERR10|LMCD1DN|LOH3CR2A|NAG-7|NAG7|NCRNA00312 long intergenic non-protein coding RNA 312 ncRNA 126-104 chrX 103137363 103137956 + 0.333333 NA Intergenic L1M8|LINE|L1 -44516 NM_022052 56000 Hs.60386 NM_022052 ENSG00000147206 NXF3 - nuclear RNA export factor 3 protein-coding 113.5-69 chr4 104168492 104168924 + 0.333333 NA Intergenic Intergenic -322257 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 114.667-30 chr14 58563588 58564141 + 0.333333 NA Intergenic AluJb|SINE|Alu -70204 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 113.167-17 chr13 59191784 59192279 + 0.333333 NA Intergenic L1MA8|LINE|L1 -820687 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 134.667-114 chr9 84259746 84260247 + 0.333333 NA Intergenic Intergenic 80762 NR_037638 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 133.333-47 chr19 29074199 29074672 + 0.333333 NA Intergenic AluSq2|SINE|Alu 71880 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 142.333-62 chr20 48029077 48029614 + 0.333333 NA Intergenic AluSz|SINE|Alu -39228 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 127.167-29 chr14 51236669 51237361 + 0.333333 NA Intergenic L1M4b|LINE|L1 -3232 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 121.333-67 chr3 125552796 125553441 + 0.333333 NA intron (NM_022776, intron 8 of 12) AluJb|SINE|Alu -32916 NR_073435 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 130.333-14 chr10 98379618 98380186 + 0.333333 NA Intergenic Intergenic 15405 NR_031619 100302133 NR_031619 ENSG00000284415 MIR1287 MIRN1287|hsa-mir-1287|mir-1287 microRNA 1287 ncRNA 121.667-104 chr8 120062747 120063176 + 0.333333 NA Intergenic AluSz|SINE|Alu -62141 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 140.5-40 chr2 228165676 228166316 + 0.333333 NA intron (NM_030623, intron 1 of 10) Tigger18a|DNA|TcMar-Tigger 15649 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 114.5-78 chr6 53338398 53338844 + 0.333333 NA intron (NM_001242830, intron 1 of 6) intron (NM_001242830, intron 1 of 6) -1004 NR_046241 647190 Hs.520189 NR_046241 RPS16P5 RPS16_3_702 ribosomal protein S16 pseudogene 5 pseudo 154.333-29 chr17 29383032 29383760 + 0.333333 NA Intergenic Intergenic -7266 NR_039749 100616122 NR_039749 ENSG00000284162 MIR4523 - microRNA 4523 ncRNA 123.167-12 chr10 59993859 59994314 + 0.333333 NA Intergenic L1MC5|LINE|L1 -33173 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 115.667-20 chr12 2736245 2736883 + 0.333333 NA Intergenic Intergenic -45407 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 129.833-61 chr6 114197326 114197786 + 0.333333 NA intron (NR_125845, intron 8 of 9) L1PA17|LINE|L1 -134679 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 115.167-62 chr20 17350166 17350701 + 0.333333 NA intron (NM_002594, intron 2 of 11) intron (NM_002594, intron 2 of 11) 123393 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 120.5-62 chr3 146138527 146139155 + 0.333333 NA intron (NM_182943, intron 1 of 19) intron (NM_182943, intron 1 of 19) 22343 NM_182943 5352 Hs.477866 NM_000935 ENSG00000152952 PLOD2 BRKS2|LH2|TLH procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding 119.167-68 chr4 41176776 41177209 + 0.333333 NA intron (NM_173075, intron 1 of 16) intron (NM_173075, intron 1 of 16) 37550 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 113.667-46 chr16 3625874 3626215 + 0.333333 NA Intergenic AluJb|SINE|Alu -14438 NM_032444 84464 Hs.143681 NM_032444 ENSG00000188827 SLX4 BTBD12|FANCP|MUS312 SLX4 structure-specific endonuclease subunit protein-coding 124.667-118 chr8 26519255 26519743 + 0.333333 NA intron (NM_001197293, intron 1 of 13) intron (NM_001197293, intron 1 of 13) 5468 NM_001197293 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 117.833-29 chr14 67267273 67267671 + 0.333333 NA intron (NM_001256550, intron 1 of 14) AluSq2|SINE|Alu 26037 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 144.5-13 chr11 23358577 23359306 + 0.333333 NA Intergenic Intergenic 60249 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 115.667-112 chr7 54974719 54975232 + 0.333333 NA Intergenic L1MEd|LINE|L1 -44042 NM_001346897 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 115.333-79 chr4 117498681 117499224 + 0.333333 NA intron (NR_125757, intron 2 of 3) L2c|LINE|L2 70554 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 117.833-16 chr12 5773080 5773505 + 0.333333 NA intron (NM_001278596, intron 10 of 25) intron (NM_001278596, intron 10 of 25) 171967 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 139-45 chr3 196665682 196666253 + 0.333333 NA Intergenic LTR33|LTR|ERVL 26273 NM_198565 375387 Hs.702186 NM_198565 ENSG00000174004 NRROS ELLP3030|GARPL1|LRRC33|UNQ3030 negative regulator of reactive oxygen species protein-coding 121.5-60 chr2 235191822 235192253 + 0.333333 NA Intergenic Intergenic 164302 NM_001371306 155-12 chr10 66975809 66976584 + 0.333333 NA intron (NM_178011, intron 2 of 2) L2c|LINE|L2 35957 NR_111911 101928961 Hs.687014 NR_111911 LOC101928961 - uncharacterized LOC101928961 ncRNA 118.834 chr1 10179870 10180536 + 0.333333 NA 3' UTR (NM_001105562, exon 28 of 28) 3' UTR (NM_001105562, exon 28 of 28) -30367 NM_183416 23095 Hs.97858 NM_015074 ENSG00000054523 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 127.5-43 chr3 71397824 71398373 + 0.333333 NA intron (NR_146142, intron 3 of 19) intron (NR_146142, intron 3 of 19) -93327 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 169.667-47 chr20 32322618 32323204 + 0.333333 NA intron (NM_004798, intron 5 of 8) intron (NM_004798, intron 5 of 8) -35433 NM_001164603 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 114.667-134 chr9 73456527 73457044 + 0.333333 NA Intergenic Intergenic 304920 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 121.167-63 chr5 7710831 7711311 + 0.333333 NA intron (NM_020546, intron 10 of 24) L2|LINE|L2 140062 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 113.167-43 chr20 41355882 41356350 + 0.333333 NA intron (NM_001301860, intron 14 of 19) intron (NM_001301860, intron 14 of 19) 10702 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 115.667-81 chr4 60076346 60076798 + 0.333333 NA Intergenic Intergenic -846047 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 117.667-10 chr10 17873863 17874300 + 0.333333 NA intron (NM_002438, intron 16 of 29) intron (NM_002438, intron 16 of 29) 28974 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 129.667-64 chr21 21198274 21198965 + 0.333333 NA intron (NM_001352597, intron 1 of 10) intron (NM_001352597, intron 1 of 10) 51457 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 124-56 chr2 134973279 134973945 + 0.333333 NA intron (NM_001282883, intron 7 of 7) L1MA4A|LINE|L1 50037 NM_001321177 80122 Hs.659395 NM_025052 ENSG00000176601 MAP3K19 RCK|YSK4 mitogen-activated protein kinase kinase kinase 19 protein-coding 115.167-49 chr18 61680303 61680743 + 0.333333 NA Intergenic AluJb|SINE|Alu -67653 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 146.333-66 chr3 128288392 128288942 + 0.333333 NA intron (NM_021937, intron 4 of 6) intron (NM_021937, intron 4 of 6) -134753 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 156-82 chr7 62927614 62928378 + 0.333333 NA Intergenic ALR/Alpha|Satellite|centr 376060 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 165.667-45 chr3 75009979 75010718 + 0.333333 NA Intergenic MLT1H2|LTR|ERVL-MaLR -204128 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 115-10 chr10 29352577 29353080 + 0.333333 NA Intergenic MLT1C|LTR|ERVL-MaLR -56706 NR_110923 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 144.834-6 chrX 5372590 5373422 + 0.333333 NA Intergenic AluSx|SINE|Alu -739434 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 128.5-86 chr9 82796272 82797029 + 0.333333 NA Intergenic L1MB8|LINE|L1 266492 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 132.5-49 chr2 122983125 122983816 + 0.333333 NA Intergenic Intergenic 90011 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 152-17 chr12 5100033 5100623 + 0.333333 NA Intergenic MIR1_Amn|SINE|MIR 56449 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 130.667-37 chr18 28346650 28347207 + 0.333333 NA Intergenic Intergenic -169798 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 152-18 chr12 8959695 8960484 + 0.333333 NA intron (NR_137427, intron 1 of 2) L1MEc|LINE|L1 10045 NM_001329102 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 118.333-68 chr3 7817512 7818117 + 0.333333 NA Intergenic Intergenic 198493 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 123.167-79 chr5 40810734 40811216 + 0.333333 NA Intergenic AluSp|SINE|Alu -12780 NM_206907 5562 Hs.43322 NM_006251 ENSG00000132356 PRKAA1 AMPK|AMPKa1 protein kinase AMP-activated catalytic subunit alpha 1 protein-coding 145.167-32 chr2 126841601 126842351 + 0.333333 NA Intergenic Intergenic -56914 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 144.333-65 chr4 156275446 156276168 + 0.333333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -321941 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 122.5-35 chr15 63989943 63990426 + 0.333333 NA intron (NM_014326, intron 2 of 11) AluSz6|SINE|Alu 56301 NM_001363730 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 116.833-59 chr7 62635305 62635738 + 0.333333 NA Intergenic ALR/Alpha|Satellite|centr 668535 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 129.5-73 chr6 3033798 3034314 + 0.333333 NA Intergenic AluJb|SINE|Alu 9993 NR_152848 101927759 Hs.145597 NR_132750 LOC101927759 - uncharacterized LOC101927759 ncRNA 116.167-10 chr1 175879527 175880159 + 0.333333 NA non-coding (NR_125964, exon 2 of 3) non-coding (NR_125964, exon 2 of 3) 2500 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 124-46 chr19 32166684 32167145 + 0.333333 NA Intergenic Intergenic -60998 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 119-87 chr6 161524321 161525024 + 0.333333 NA intron (NM_004562, intron 9 of 11) intron (NM_004562, intron 9 of 11) 53695 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 131.5-75 chr7 50127567 50128278 + 0.333333 NA intron (NM_001161834, intron 2 of 8) L1MA4|LINE|L1 31836 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 125-34 chr17 71351615 71352171 + 0.333333 NA Intergenic Intergenic -149714 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 113.167-64 chr6 53155307 53155834 + 0.333333 NA Intergenic AluSp|SINE|Alu -6729 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 129.167-29 chr16 59014792 59015390 + 0.333333 NA Intergenic Intergenic -280775 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 120-63 chr2 205987766 205988188 + 0.333333 NA Intergenic Intergenic 98197 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 139.833-3 chr10 43128278 43128916 + 0.333333 NA TTS (NM_001355216) TTS (NM_001355216) -9848 NR_135077 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 113.334-4 chr2 96565367 96566026 + 0.333333 NA Intergenic Intergenic 27817 NM_001319092 10865 Hs.920 NM_006673 ENSG00000196843 ARID5A MRF-1|MRF1|RP11-363D14 AT-rich interaction domain 5A protein-coding 118-5 chr1 93224026 93224550 + 0.333333 NA intron (NM_001306076, intron 16 of 28) L1MC5a|LINE|L1 43572 NM_001306076 343099 Hs.482873 NM_206886 ENSG00000122483 CCDC18 NY-SAR-41 coiled-coil domain containing 18 protein-coding 216.167-29 chr8 80490708 80491655 + 0.333333 NA intron (NM_001105539, intron 1 of 5) Tigger3c|DNA|TcMar-Tigger 4955 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 138.333-20 chr11 100788216 100788928 + 0.333333 NA intron (NM_001367945, intron 2 of 25) intron (NM_001367945, intron 2 of 25) -100617 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 122.833-52 chr21 25202131 25202692 + 0.333333 NA Intergenic Intergenic 229290 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 118.167-10 chr10 93376448 93376897 + 0.333333 NA intron (NM_013451, intron 22 of 53) intron (NM_013451, intron 22 of 53) 105662 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 122.667-45 chr2 222833798 222834373 + 0.333333 NA Intergenic Tigger19b|DNA|TcMar-Tigger -26951 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 173-27 chr2 7927281 7928176 + 0.333333 NA intron (NR_015405, intron 2 of 2) intron (NR_015405, intron 2 of 2) -28073 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 121.5-10 chr1 218760524 218761189 + 0.333333 NA intron (NR_031644, intron 4 of 6) Tigger19a|DNA|TcMar-Tigger 157655 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 160.834-2 chr16 79627870 79628757 + 0.333333 NA Intergenic LTR16E1|LTR|ERVL -27576 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 157.833-56 chr6 48787594 48788161 + 0.333333 NA Intergenic L1ME1|LINE|L1 675376 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 114-39 chr13 66472642 66473301 + 0.333333 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 254721 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 125.667-121 chr8 125107134 125107764 + 0.333333 NA intron (NM_001349486, intron 3 of 7) AluSg|SINE|Alu 15589 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 119.167-80 chr5 116660124 116660571 + 0.333333 NA Intergenic LTR67B|LTR|ERVL -85524 NM_001300780 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 122.5-80 chr6 66881078 66881445 + 0.333333 NA Intergenic MSTA-int|LTR|ERVL-MaLR 1093382 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 121.667-75 chr4 93658047 93658705 + 0.333333 NA intron (NM_001286838, intron 13 of 14) intron (NM_001286838, intron 13 of 14) -170377 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 115.167-65 chr3 24547547 24548122 + 0.333333 NA Intergenic Intergenic -52126 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 130.667-63 chr4 39590587 39591137 + 0.333333 NA intron (NR_047679, intron 4 of 4) intron (NR_047679, intron 4 of 4) 36259 NM_001317897 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 148.334-9 chr7 102868529 102869336 + 0.333333 NA intron (NR_105043, intron 17 of 20) AluSz6|SINE|Alu -44068 NM_001031692 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 146.667-95 chr8 117646134 117646938 + 0.333333 NA Intergenic MLT1I|LTR|ERVL-MaLR 125823 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 126.167-53 chr3 47171188 47171823 + 0.333333 NA intron (NR_033373, intron 2 of 6) AluSz|SINE|Alu 7135 NR_033373 285352 Hs.570631 NR_033373 KIF9-AS1 - KIF9 antisense RNA 1 ncRNA 141.5-60 chr3 117432388 117433180 + 0.333333 NA Intergenic Intergenic 258141 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 140.5-79 chr8 121656866 121657383 + 0.333333 NA Intergenic SVA_D|Retroposon|SVA -15684 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 223.667-6 chr12 119007475 119008401 + 0.333333 NA intron (NM_194286, intron 1 of 12) MIRb|SINE|MIR 26397 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 118.167-30 chr2 23938211 23938858 + 0.333333 NA Intergenic L1M4|LINE|L1 -1929 NM_181713 165324 Hs.591576 NM_181713 ENSG00000173960 UBXN2A UBXD4 UBX domain protein 2A protein-coding 130.5-37 chr19 18245096 18245582 + 0.333333 NA intron (NM_000923, intron 1 of 15) AluSx1|SINE|Alu 2861 NM_000923 5143 Hs.132584 NM_000923 ENSG00000105650 PDE4C DPDE1|PDE21 phosphodiesterase 4C protein-coding 144.333-39 chr17 63723065 63723741 + 0.333333 NA intron (NR_156741, intron 3 of 11) intron (NR_156741, intron 3 of 11) 18396 NR_156741 92335 Hs.514402 NM_153335 ENSG00000266173 STRADA LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk STE20 related adaptor alpha protein-coding 113.833-24 chr15 80993659 80994197 + 0.333333 NA Intergenic MIR|SINE|MIR 3545 NR_039739 100616181 NR_039739 ENSG00000265855 MIR4514 - microRNA 4514 ncRNA 140.333-74 chr6 64277838 64278450 + 0.333333 NA intron (NM_001292009, intron 30 of 43) L3|LINE|CR1 471308 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 132.5-39 chr18 2786324 2786721 + 0.333333 NA intron (NM_015295, intron 45 of 47) AluSq2|SINE|Alu -60484 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 191.833-26 chr5 119519414 119520342 + 0.333333 NA intron (NM_001199291, intron 18 of 24) intron (NM_001199291, intron 18 of 24) 67381 NM_001199291 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 130-8 chr1 185068321 185068799 + 0.333333 NA intron (NM_007212, intron 1 of 6) MLT1D|LTR|ERVL-MaLR 23002 NM_007212 6045 Hs.591490 NM_007212 ENSG00000121481 RNF2 BAP-1|BAP1|DING|HIPI3|RING1B|RING2 ring finger protein 2 protein-coding 130.667-6 chr1 208782338 208782890 + 0.333333 NA Intergenic Intergenic 53926 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 201.667-40 chr7 22574506 22575392 + 0.333333 NA TTS (NR_038393) TTS (NR_038393) 11612 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 130.667-71 chr5 33077061 33077555 + 0.333333 NA Intergenic THE1B|LTR|ERVL-MaLR 129865 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 158.833-22 chr15 46325252 46325890 + 0.333333 NA Intergenic MLT2F|LTR|ERVL 620376 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 120-27 chr13 28432054 28432493 + 0.333333 NA intron (NM_002019, intron 6 of 29) intron (NM_002019, intron 6 of 29) 62855 NM_001160030 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 162.5-8 chr10 114745310 114746012 + 0.333333 NA intron (NM_001322886, intron 1 of 20) AluSq2|SINE|Alu -19127 NR_120628 101927692 Hs.576909 NR_120628 ENSG00000228484 LOC101927692 - uncharacterized LOC101927692 ncRNA 146-22 chr14 85672329 85672878 + 0.333333 NA Intergenic MIR|SINE|MIR 139254 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 115.167-47 chr17 69454189 69454747 + 0.333333 NA intron (NM_002758, intron 1 of 11) AluSg|SINE|Alu 31064 NR_145982 105371880 NR_145982 LOC105371880 - uncharacterized LOC105371880 ncRNA 126.333-54 chr2 23221491 23221915 + 0.333333 NA Intergenic Intergenic -163476 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 178.667-37 chr3 4143601 4144279 + 0.333333 NA Intergenic MER5A1|DNA|hAT-Charlie -159364 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 166.333-29 chr19 51844920 51845516 + 0.333333 NA intron (NR_163433, intron 6 of 11) AluSp|SINE|Alu 42718 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 137.5-94 chr8 81555475 81556102 + 0.333333 NA Intergenic Intergenic -24398 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 118.667-90 chr5 2928351 2928952 + 0.333333 NA Intergenic Intergenic 10797 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 125-62 chr4 134174028 134174625 + 0.333333 NA Intergenic Tigger3b|DNA|TcMar-Tigger 27463 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 130.333-69 chr4 98073994 98074552 + 0.333333 NA intron (NM_174952, intron 5 of 10) L1MEg|LINE|L1 69203 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 183.333-47 chr5 119868420 119869049 + 0.333333 NA Intergenic Intergenic 239175 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 116.5-44 chr20 49177371 49178033 + 0.333333 NA intron (NM_001319135, intron 2 of 14) intron (NM_001319135, intron 2 of 14) 10668 NM_017454 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 135-76 chr5 26779886 26780429 + 0.333333 NA Intergenic L1MD|LINE|L1 258429 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 134-6 chr1 69338993 69339654 + 0.333333 NA Intergenic THE1B|LTR|ERVL-MaLR -93932 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 113.833-28 chr17 61501282 61501754 + 0.333333 NA Intergenic Intergenic 45030 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 123.833-47 chr5 56370718 56371290 + 0.333333 NA Intergenic L1MB5|LINE|L1 110765 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 116.167 chr1 64604025 64604675 + 0.333333 NA intron (NM_020925, intron 4 of 26) intron (NM_020925, intron 4 of 26) 24503 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 117.167-88 chr7 96444443 96445004 + 0.333333 NA Intergenic LTR79|LTR|ERVL 58800 NM_001201451 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 115.5-98 chr7 134668341 134668968 + 0.333333 NA intron (NM_001724, intron 2 of 2) intron (NM_001724, intron 2 of 2) 21801 NM_001724 669 Hs.198365 NM_001724 ENSG00000172331 BPGM DPGM|ECYT8 bisphosphoglycerate mutase protein-coding 123.5-71 chr6 66178811 66179373 + 0.333333 NA Intergenic Intergenic 391213 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 127.167-85 chr8 41893422 41893954 + 0.333333 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) 3053 NM_001142446 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 121.667-99 chr8 74231422 74232021 + 0.333333 NA Intergenic Intergenic 89640 NM_001363050 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 148.167-28 chr17 28021940 28022539 + 0.333333 NA Intergenic Intergenic -20438 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 131.5-6 chr10 88000020 88000641 + 0.333333 NA Intergenic L1PA10|LINE|L1 136705 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 123.833-30 chr2 63186978 63187626 + 0.333333 NA intron (NR_148705, intron 13 of 16) L1MB2|LINE|L1 -67760 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 120.5-10 chr10 28969827 28970228 + 0.333333 NA Intergenic Intergenic 123619 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 154.333-10 chr10 79246601 79247121 + 0.333333 NA intron (NM_020338, intron 7 of 24) intron (NM_020338, intron 7 of 24) -100608 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 143.833-39 chr5 84651092 84651799 + 0.333333 NA Intergenic Intergenic -266565 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 131.667-110 chr6 36924600 36925153 + 0.333333 NA 3' UTR (NM_001286637, exon 9 of 9) 3' UTR (NM_001286637, exon 9 of 9) -23387 NM_001199159 221476 Hs.25391 NM_153370 ENSG00000164530 PI16 CD364|CRISP9|MSMBBP|PSPBP peptidase inhibitor 16 protein-coding 142.667-70 chr3 78684515 78685061 + 0.333333 NA intron (NM_002941, intron 10 of 30) intron (NM_002941, intron 10 of 30) 334671 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 121.833-58 chr5 38996943 38997494 + 0.333333 NA intron (NM_001285439, intron 5 of 38) intron (NM_001285439, intron 5 of 38) 77181 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 125.667-36 chr15 26760065 26760520 + 0.333333 NA intron (NM_001278631, intron 3 of 9) MIR3|SINE|MIR 12774 NM_000814 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 116.167-77 chr8 58017420 58018064 + 0.333333 NA intron (NM_147189, intron 1 of 4) intron (NM_147189, intron 1 of 4) 23219 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 152-33 chr21 16117392 16118119 + 0.333333 NA intron (NR_111005, intron 1 of 6) intron (NR_111005, intron 1 of 6) 46641 NR_111004 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 142.167-64 chr5 128263399 128264148 + 0.333333 NA intron (NM_001999, intron 62 of 64) intron (NM_001999, intron 62 of 64) 180007 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 127.5-16 chr11 83976228 83976689 + 0.333333 NA intron (NM_001142699, intron 12 of 27) intron (NM_001142699, intron 12 of 27) -294033 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 115.5-21 chr11 19211944 19212356 + 0.333333 NA Intergenic L1MC1|LINE|L1 -10167 NM_003476 8048 Hs.83577 NM_003476 ENSG00000129170 CSRP3 CLP|CMD1M|CMH12|CRP3|LMO4|MLP cysteine and glycine rich protein 3 protein-coding 147.5-15 chr10 112541063 112541545 + 0.333333 NA intron (NM_001365712, intron 6 of 8) MIRc|SINE|MIR -92866 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 115.334-5 chr4 67938085 67938767 + 0.333333 NA intron (NM_001114387, intron 3 of 9) L1PA16|LINE|L1 25067 NM_001114387 339967 Hs.450110 NM_182606 ENSG00000187054 TMPRSS11A ECRG1 transmembrane serine protease 11A protein-coding 125.167-10 chr10 52693360 52693964 + 0.333333 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 61742 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 132.167-38 chr2 144004743 144005353 + 0.333333 NA TTS (NM_001354358) TTS (NM_001354358) 67981 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 150.5-10 chr10 90680814 90681468 + 0.333333 NA Intergenic Intergenic -140336 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 176.167-20 chr19 53114084 53114844 + 0.333333 NA intron (NM_001352151, intron 3 of 3) AluSx|SINE|Alu -11030 NM_001322133 90338 Hs.655967 NM_033288 ENSG00000170949 ZNF160 F11|HKr18|HZF5|KR18 zinc finger protein 160 protein-coding 154-15 chr12 79833952 79834678 + 0.333333 NA intron (NM_001244990, intron 4 of 24) L2a|LINE|L2 79596 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 131.667-122 chr7 114166130 114166837 + 0.333333 NA intron (NR_033766, intron 1 of 19) AluSc8|SINE|Alu 80156 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 142.5-41 chr2 103496184 103496761 + 0.333333 NA Intergenic Intergenic -512043 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 122.333-91 chr5 39600253 39600659 + 0.333333 NA Intergenic MER5B|DNA|hAT-Charlie 80025 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 206.667-28 chr22 22045124 22046020 + 0.333333 NA Intergenic Intergenic -1638 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 116.5-31 chr19 14916326 14916996 + 0.333333 NA Intergenic Intergenic -24828 NM_012377 26658 Hs.589620 NM_012377 ENSG00000127529 OR7C2 CIT-HSP-87M17|OR19-18|OR7C3 olfactory receptor family 7 subfamily C member 2 protein-coding 132.5-87 chr7 16791143 16791888 + 0.333333 NA TTS (NM_006408) TTS (NM_006408) 13484 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 128.333-23 chr11 107022888 107023420 + 0.333333 NA Intergenic MIR3|SINE|MIR -4678 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 115.833-73 chr7 51251112 51251570 + 0.333333 NA intron (NM_015198, intron 1 of 12) intron (NM_015198, intron 1 of 12) 65468 NM_001287438 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 141.334-4 chr2 3766400 3767141 + 0.333333 NA intron (NM_001287444, intron 6 of 10) intron (NM_001287444, intron 6 of 10) 59928 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 131.5-58 chr4 98234617 98235139 + 0.333333 NA Intergenic MIRc|SINE|MIR -26506 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 122.334-7 chr5 131190803 131191490 + 0.333333 NA intron (NM_181705, intron 4 of 4) intron (NM_181705, intron 4 of 4) 20202 NM_181705 90624 Hs.115467 NM_181705 ENSG00000186687 LYRM7 C5orf31|MC3DN8|MZM1L LYR motif containing 7 protein-coding 181.833-57 chrX 45136498 45137060 + 0.333333 NA Intergenic Intergenic 64097 NM_024689 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 131.667-57 chr2 55533069 55533710 + 0.333333 NA intron (NM_001282761, intron 5 of 10) intron (NM_001282761, intron 5 of 10) 13794 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 142.167-19 chr12 119562942 119563573 + 0.333333 NA Intergenic AluSq4|SINE|Alu -30517 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 126.833-28 chr12 45749887 45750512 + 0.333333 NA intron (NM_152641, intron 3 of 20) Tigger1|DNA|TcMar-Tigger 20490 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 165.833-51 chr5 113753756 113754570 + 0.333333 NA Intergenic MER20|DNA|hAT-Charlie 240469 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 153.334-8 chr9 28987132 28987930 + 0.333333 NA intron (NM_001354574, intron 1 of 5) L1MA7|LINE|L1 -98576 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 131.833-21 chr16 7640727 7641362 + 0.333333 NA intron (NM_145893, intron 8 of 13) intron (NM_145893, intron 8 of 13) 308199 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 119.834-4 chr9 25918404 25919068 + 0.333333 NA Intergenic Intergenic 138680 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 117.167-42 chr2 109034139 109034754 + 0.333333 NA Intergenic Intergenic -45226 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 113.333-95 chr5 162710969 162711570 + 0.333333 NA Intergenic Intergenic 643627 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 126.5-72 chr5 35642375 35643072 + 0.333333 NA intron (NM_144722, intron 3 of 9) intron (NM_144722, intron 3 of 9) 24860 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 171.167-59 chr8 114396886 114397506 + 0.333333 NA Intergenic L1PA16|LINE|L1 -960257 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 127.333-49 chr2 62941775 62942407 + 0.333333 NA intron (NM_001142615, intron 10 of 22) intron (NM_001142615, intron 10 of 22) 105620 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 116.167-62 chr5 35591304 35591892 + 0.333333 NA Intergenic Intergenic -26265 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 123.833-57 chr7 5765791 5766446 + 0.333333 NA intron (NM_207111, intron 1 of 16) AluJr4|SINE|Alu 15545 NM_207116 54476 Hs.487458 NM_019011 ENSG00000011275 RNF216 CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN ring finger protein 216 protein-coding 117.333-38 chr17 79875759 79876132 + 0.333333 NA Intergenic L1MD2|LINE|L1 -36505 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 114-53 chr2 41591769 41592153 + 0.333333 NA Intergenic L1MC4|LINE|L1 -285594 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 130-7 chr1 178891575 178892332 + 0.333333 NA intron (NM_001286247, intron 14 of 18) intron (NM_001286247, intron 14 of 18) -20876 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 119.5-15 chr10 51901174 51901660 + 0.333333 NA intron (NM_001098512, intron 4 of 17) Charlie1|DNA|hAT-Charlie -201822 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 132.834-5 chr14 86445034 86445753 + 0.333333 NA Intergenic Intergenic -460385 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 185.834-7 chr5 28566006 28567023 + 0.333333 NA Intergenic L1MA4A|LINE|L1 -278849 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 123.333-70 chr3 13696775 13697187 + 0.333333 NA intron (NR_027103, intron 2 of 5) intron (NR_027103, intron 2 of 5) 46260 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 121.167-22 chr13 74206348 74206960 + 0.333333 NA Intergenic Intergenic -24790 NR_144451 100507612 Hs.447508 NR_144451 ENSG00000235532 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 140.5-14 chr12 4620633 4621111 + 0.333333 NA intron (NM_001278309, intron 5 of 5) Tigger3b|DNA|TcMar-Tigger 16009 NM_001282286 8798 Hs.439530 NM_003845 ENSG00000010219 DYRK4 - dual specificity tyrosine phosphorylation regulated kinase 4 protein-coding 125.833-63 chr4 62228341 62228997 + 0.333333 NA Intergenic Intergenic -66904 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 113.5-57 chr20 44376817 44377392 + 0.333333 NA TTS (NR_109949) TTS (NR_109949) 18602 NR_109949 101927219 Hs.655919 NR_109949 ENSG00000229005 HNF4A-AS1 uc002xlx HNF4A antisense RNA 1 ncRNA 131-18 chr13 38269955 38270571 + 0.333333 NA Intergenic L1PA10|LINE|L1 -79588 NM_001286705 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20|HLD14 ubiquitin fold modifier 1 protein-coding 124-97 chr8 117949194 117949815 + 0.333333 NA intron (NM_000127, intron 1 of 10) (TA)n|Simple_repeat|Simple_repeat -28591 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 200-10 chr11 55387481 55388280 + 0.333333 NA Intergenic Intergenic 19996 NM_001005275 81328 Hs.554529 NM_001005275 ENSG00000181958 OR4A15 OR11-118 olfactory receptor family 4 subfamily A member 15 protein-coding 116.333-11 chr10 23021168 23021640 + 0.333333 NA intron (NM_001282745, intron 16 of 18) L1PA16|LINE|L1 -74175 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 128.167-15 chr11 110348841 110349316 + 0.333333 NA Intergenic Intergenic -6036 NR_135100 105369486 Hs.611557 NR_135100 LINC02732 - long intergenic non-protein coding RNA 2732 ncRNA 116.167-83 chr8 138807153 138807701 + 0.333333 NA intron (NM_152888, intron 10 of 64) intron (NM_152888, intron 10 of 64) 106614 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 117.667-27 chr11 73690196 73690719 + 0.333333 NA intron (NM_001243718, intron 3 of 4) AluJb|SINE|Alu 41544 NM_001130036 58473 Hs.445489 NM_021200 ENSG00000021300 PLEKHB1 KPL1|PHR1|PHRET1 pleckstrin homology domain containing B1 protein-coding 124.333-65 chr3 90669153 90669781 + 0.333333 NA Intergenic ALR/Alpha|Satellite|centr 1561846 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 125-9 chr10 24543998 24544545 + 0.333333 NA exon (NM_019590, exon 19 of 21) exon (NM_019590, exon 19 of 21) 77740 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 113.334-7 chr4 160842000 160842625 + 0.333333 NA Intergenic Intergenic -1064528 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 144.667-97 chr8 120492830 120493428 + 0.333333 NA intron (NM_022045, intron 13 of 21) intron (NM_022045, intron 13 of 21) 47710 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 132.5-30 chr14 68306311 68306892 + 0.333333 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 322186 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 125.167-27 chr14 68408965 68409499 + 0.333333 NA intron (NM_133509, intron 8 of 10) Charlie8|DNA|hAT-Charlie 219555 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 123.5-20 chr12 54919009 54919551 + 0.333333 NA Intergenic L1MA8|LINE|L1 54452 NM_001351153 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 114.667-27 chr14 45784217 45784783 + 0.333333 NA Intergenic L1MA7|LINE|L1 -68898 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 133.167-8 chr10 49466094 49466687 + 0.333333 NA intron (NM_001346440, intron 18 of 20) L1MC4|LINE|L1 57891 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 128.667-86 chr4 91278837 91279459 + 0.333333 NA intron (NM_001145065, intron 10 of 10) L1MA4A|LINE|L1 998154 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 115.5-25 chr12 19207316 19207824 + 0.333333 NA intron (NM_001256787, intron 1 of 25) intron (NM_001256787, intron 1 of 25) 2245 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 160.333-67 chr9 92238741 92239316 + 0.333333 NA intron (NR_073446, intron 29 of 32) MER6C|DNA|TcMar-Tigger -47872 NM_001350291 138652 Hs.742918 NM_001350291 PRSS47 - serine protease 47 protein-coding 127-31 chr14 64579348 64579966 + 0.333333 NA intron (NM_172365, intron 8 of 11) intron (NM_172365, intron 8 of 11) 29696 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 116.5-88 chr7 117553860 117554311 + 0.333333 NA intron (NM_000492, intron 10 of 26) L2a|LINE|L2 10591 NR_149084 111082987 Hs.583149 NR_149084 ENSG00000232661 CFTR-AS1 BGas CFTR antisense RNA 1 ncRNA 148.167-78 chr7 100161162 100161940 + 0.333333 NA intron (NM_024637, intron 3 of 3) AluSz|SINE|Alu -2828 NM_001303470 55262 Hs.533139 NM_018275 ENSG00000146826 MAP11 C7orf43|MCPH25 microtubule associated protein 11 protein-coding 118.167-33 chr2 151505897 151506435 + 0.333333 NA exon (NM_004543, exon 136 of 149) exon (NM_004543, exon 136 of 149) 96264 NM_001177665 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 140.667-21 chr12 128292118 128292675 + 0.333333 NA intron (NM_001136103, intron 1 of 8) intron (NM_001136103, intron 1 of 8) -1696 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 116.833-50 chr5 43753322 43753752 + 0.333333 NA Intergenic THE1B-int|LTR|ERVL-MaLR -150307 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 115.834-3 chr1 220050210 220050889 + 0.333333 NA Intergenic AluJr|SINE|Alu -4044 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 114.167-76 chr5 12636964 12637492 + 0.333333 NA intron (NR_033383, intron 2 of 3) THE1B|LTR|ERVL-MaLR -30631 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 119.833-3 chr1 51806465 51806915 + 0.333333 NA intron (NM_001101662, intron 18 of 30) L1M2b|LINE|L1 29712 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 151.667-4 chr1 231967094 231967727 + 0.333333 NA intron (NM_001164538, intron 10 of 10) Charlie7a|DNA|hAT-Charlie 41576 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 148.833-43 chr4 14923846 14924478 + 0.333333 NA intron (NR_038857, intron 7 of 7) Tigger3a|DNA|TcMar-Tigger -35993 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 116.333-99 chr8 15322217 15322640 + 0.333333 NA Intergenic L1M3|LINE|L1 -83997 NM_001322881 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 137.333-13 chr11 47693811 47694338 + 0.333333 NA intron (NM_024783, intron 8 of 18).2 AluJb|SINE|Alu 21295 NM_024783 79841 Hs.147377 NM_024783 ENSG00000165923 AGBL2 CCP2 ATP/GTP binding protein like 2 protein-coding 125.333-32 chr12 18999941 19000436 + 0.333333 NA Intergenic Intergenic -129545 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 141-93 chr9 82361584 82362133 + 0.333333 NA Intergenic Intergenic 373086 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 132-37 chr17 63205768 63206347 + 0.333333 NA intron (NM_025185, intron 6 of 25) L1MB4|LINE|L1 234210 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 149.833-8 chr12 111484320 111484846 + 0.333333 NA intron (NR_132311, intron 17 of 23) AluSx|SINE|Alu 49721 NM_001291424 10019 Hs.506784 NM_005475 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 115.5-49 chr2 6759120 6759772 + 0.333333 NA intron (NR_038369, intron 1 of 5) intron (NR_038369, intron 1 of 5) 10865 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 136.5-56 chr2 206077485 206077953 + 0.333333 NA intron (NM_017759, intron 1 of 10) intron (NM_017759, intron 1 of 10) 8455 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 136-16 chr11 46076315 46076888 + 0.333333 NA intron (NR_147890, intron 5 of 18) intron (NR_147890, intron 5 of 18) 44218 NM_001352028 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 113.833-72 chr5 126607008 126607490 + 0.333333 NA intron (NM_032177, intron 2 of 4) MIR3|SINE|MIR 6302 NM_032177 51808 Hs.555731 NM_032177 ENSG00000164902 PHAX RNUXA phosphorylated adaptor for RNA export protein-coding 113.667-98 chr5 27096259 27096667 + 0.333333 NA Intergenic LTR8A|LTR|ERV1 -57877 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 127.167-72 chr6 12240542 12241141 + 0.333333 NA Intergenic MLT1J|LTR|ERVL-MaLR -49520 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 140.334-7 chr3 88703703 88704524 + 0.333333 NA Intergenic Intergenic 365657 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 160.833-27 chr2 226141689 226142405 + 0.333333 NA promoter-TSS (NR_046102) promoter-TSS (NR_046102) -747 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 129.833-31 chr18 4418760 4419435 + 0.333333 NA intron (NM_001242761, intron 1 of 11) L1MCa|LINE|L1 36169 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 129.667-110 chr9 117561338 117561828 + 0.333333 NA Intergenic Intergenic -87023 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 151.5-67 chr6 165043063 165043853 + 0.333333 NA Intergenic L1MDb|LINE|L1 -221395 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 126.667-77 chr5 107024531 107025234 + 0.333333 NA Intergenic Intergenic -13868 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 122.5-10 chr10 25014005 25014615 + 0.333333 NA intron (NM_145010, intron 1 of 5) intron (NM_145010, intron 1 of 5) 1848 NM_145010 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 153.167-16 chr14 22721312 22722031 + 0.333333 NA Intergenic L1M5|LINE|L1 -45017 NM_005015 5018 Hs.151134 NM_005015 ENSG00000155463 OXA1L OXA1 OXA1L mitochondrial inner membrane protein protein-coding 149.334-8 chr2 168244316 168245094 + 0.333333 NA intron (NM_013233, intron 1 of 17) intron (NM_013233, intron 1 of 17) 2890 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 138.333-33 chr14 80917457 80918038 + 0.333333 NA intron (NM_152446, intron 2 of 24) intron (NM_152446, intron 2 of 24) 23991 NR_157142 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 116.333-57 chr22 33826074 33826652 + 0.333333 NA intron (NM_001362953, intron 1 of 14) AluSg4|SINE|Alu 94065 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 131.667-126 chr8 124856115 124856662 + 0.333333 NA Intergenic L1PA14|LINE|L1 -34330 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 153.333-31 chr18 1213846 1214363 + 0.333333 NA Intergenic L1MA5A|LINE|L1 145525 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 139.5-30 chr2 133636425 133636946 + 0.333333 NA Intergenic L1MEd|LINE|L1 -68222 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 146.667-58 chr21 16903732 16904546 + 0.333333 NA Intergenic L1MA4A|LINE|L1 313902 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 117.333-30 chr14 47193228 47193760 + 0.333333 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 149752 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 130.167-33 chr2 182551842 182552608 + 0.333333 NA Intergenic Intergenic -29380 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 137.5-82 chr5 112238577 112239256 + 0.333333 NA intron (NM_001347887, intron 11 of 23) intron (NM_001347887, intron 11 of 23) 10633 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 115.5-48 chr18 76569511 76570056 + 0.333333 NA Intergenic Intergenic 41128 NR_015417 284276 Hs.390287 NR_015417 ENSG00000266256 LINC00908 - long intergenic non-protein coding RNA 908 ncRNA 154.834-4 chr4 35546908 35547811 + 0.333333 NA Intergenic L1PA16|LINE|L1 696580 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 121.834-4 chr2 83542975 83543695 + 0.333333 NA Intergenic L1MB4|LINE|L1 20521 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 161 chr1 61823410 61823948 + 0.333333 NA intron (NM_001350145, intron 15 of 43) intron (NM_001350145, intron 15 of 43) -22396 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 132.833-58 chr7 35698982 35699509 + 0.333333 NA non-coding (NR_136255, exon 1 of 1) non-coding (NR_136255, exon 1 of 1) 4039 NR_136255 101930085 Hs.599851 NR_136255 ENSG00000271122 LOC101930085 - uncharacterized LOC101930085 ncRNA 134-91 chr5 145504356 145504968 + 0.333333 NA Intergenic LTR101_Mam|LTR|ERVL 330680 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 128-94 chr9 32141407 32142070 + 0.333333 NA Intergenic MIRc|SINE|MIR -242865 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 126-5 chr1 152095635 152096122 + 0.333333 NA Intergenic L1ME4a|LINE|L1 -6814 NM_001008536 126637 Hs.546477 NM_001008536 ENSG00000182898 TCHHL1 S100A17|THHL1 trichohyalin like 1 protein-coding 116-83 chr6 145256269 145256785 + 0.333333 NA Intergenic Intergenic 430350 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 126.667-53 chr22 28486552 28487073 + 0.333333 NA intron (NM_001145418, intron 2 of 22) MIRb|SINE|MIR 26943 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 148.833-19 chr14 69790282 69790989 + 0.333333 NA intron (NM_003049, intron 1 of 4) L1ME3C|LINE|L1 6606 NM_003049 6554 Hs.952 NM_003049 ENSG00000100652 SLC10A1 NTCP solute carrier family 10 member 1 protein-coding 133.833-32 chr16 79431964 79432662 + 0.333333 NA Intergenic THE1D|LTR|ERVL-MaLR 168424 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 126.334-6 chr21 20937638 20938391 + 0.333333 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -60395 NM_001352595 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 114.833-65 chr7 84924257 84924707 + 0.333333 NA Intergenic UCON5|Unknown|Unknown 197449 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 157.167-65 chr8 131930652 131931250 + 0.333333 NA intron (NM_001323557, intron 1 of 22) intron (NM_001323557, intron 1 of 22) 14178 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 128.833-79 chr6 124078837 124079421 + 0.333333 NA intron (NM_001040214, intron 1 of 6) AluSz|SINE|Alu -203876 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 119.667-84 chr5 128026620 128027088 + 0.333333 NA intron (NR_152812, intron 4 of 4) intron (NR_152812, intron 4 of 4) 56321 NR_152800 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 171.334-3 chr12 71829209 71830147 + 0.333333 NA Intergenic L1MB3|LINE|L1 -10081 NM_001146214 64786 Hs.284630 NM_022771 ENSG00000121749 TBC1D15 RAB7-GAP TBC1 domain family member 15 protein-coding 125.833-89 chr8 81365960 81366469 + 0.333333 NA Intergenic L1PA15|LINE|L1 81225 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 131.833-7 chr10 57342984 57343543 + 0.333333 NA Intergenic HUERS-P3-int|LTR|ERV1 -38704 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 120.833-76 chr9 37095695 37096107 + 0.333333 NA Intergenic AluJb|SINE|Alu 16005 NR_036592 100506710 Hs.446271 NR_036592 ENSG00000281649 EBLN3P EBLN3 endogenous Bornavirus like nucleoprotein 3, pseudogene pseudo 130.167-9 chr11 30896781 30897526 + 0.333333 NA intron (NM_001367979, intron 34 of 38) L4_C_Mam|LINE|RTE-X 95533 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 146.334-2 chr14 45423426 45424192 + 0.333333 NA Intergenic MER57-int|LTR|ERV1 -170607 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 154.834-9 chr8 119593067 119593921 + 0.333333 NA promoter-TSS (NR_045555) promoter-TSS (NR_045555) -486 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 127.333-98 chr6 122532520 122533031 + 0.333333 NA intron (NM_001270393, intron 3 of 7) L1MB3|LINE|L1 60858 NM_001270394 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 116.667-84 chr4 81755993 81756411 + 0.333333 NA Intergenic L2|LINE|L2 -284295 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 123.167-64 chr3 131940841 131941349 + 0.333333 NA intron (NM_001289112, intron 1 of 15) MIRb|SINE|MIR 44836 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 178.834-4 chr8 40099255 40100142 + 0.333333 NA Intergenic MLT1B|LTR|ERVL-MaLR -53784 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 129.834-4 chr18 73817999 73818730 + 0.333333 NA Intergenic L1M3|LINE|L1 329470 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 174.333-17 chr14 63019865 63020714 + 0.333333 NA intron (NM_139318, intron 1 of 10) L1ME2|LINE|L1 25169 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 126.167-19 chr11 98608861 98609378 + 0.333333 NA Intergenic Intergenic -411830 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 118.834-4 chr11 22483532 22484192 + 0.333333 NA intron (NR_120583, intron 1 of 3) Helitron1Nb_Mam|RC|Helitron 8157 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 119.5-13 chr10 13472952 13473586 + 0.333333 NA intron (NM_001370075, intron 5 of 8) CpG 29707 NM_152751 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 142.667-34 chr14 86484826 86485286 + 0.333333 NA Intergenic MLT1F1|LTR|ERVL-MaLR -420722 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 142.667-35 chr14 88032382 88033174 + 0.333333 NA intron (NR_046094, intron 2 of 3) ERVL-E-int|LTR|ERVL -6466 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 119.167-64 chr3 134151159 134151699 + 0.333333 NA Intergenic Intergenic -93781 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 126.5-49 chr2 226432131 226432568 + 0.333333 NA Intergenic AluY|SINE|Alu 226444 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 127.167-51 chr22 47049920 47050349 + 0.333333 NA intron (NM_001284305, intron 11 of 12) AluSq10|SINE|Alu -134092 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 129.667-83 chr5 115811645 115812321 + 0.333333 NA intron (NR_136619, intron 2 of 5) intron (NR_136619, intron 2 of 5) 4674 NR_136621 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 149.833-34 chr4 154925183 154925840 + 0.333333 NA Intergenic L1PA10|LINE|L1 144006 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 117.833-72 chr7 18180364 18180948 + 0.333333 NA intron (NM_001321872, intron 2 of 11) MIR3|SINE|MIR -53347 NR_031635 100302140 NR_031635 ENSG00000221393 MIR1302-6 MIRN1302-6|hsa-mir-1302-6 microRNA 1302-6 ncRNA 114.333-14 chr10 73577169 73577607 + 0.333333 NA intron (NM_001350995, intron 1 of 21) intron (NM_001350995, intron 1 of 21) -1713 NM_152586 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 136.333-49 chr2 150633558 150634098 + 0.333333 NA intron (NR_110247, intron 2 of 3) intron (NR_110247, intron 2 of 3) 4931 NR_110245 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 120.333-14 chr1 185843821 185844345 + 0.333333 NA intron (NM_031935, intron 1 of 106) intron (NM_031935, intron 1 of 106) 109692 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 155.333-7 chr1 195811996 195812578 + 0.333333 NA Intergenic Intergenic 276428 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 119.833-59 chr3 165105745 165106171 + 0.333333 NA Intergenic Intergenic -27462 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 116.5-4 chr1 169989398 169990039 + 0.333333 NA intron (NM_014970, intron 11 of 19) intron (NM_014970, intron 11 of 19) 79197 NM_001204517 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 121.5-34 chr14 47441454 47441956 + 0.333333 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -98459 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 113.333-80 chr4 65974514 65974906 + 0.333333 NA Intergenic Intergenic -302114 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 163.333-53 chr3 170699746 170700250 + 0.333333 NA intron (NR_135556, intron 2 of 5) THE1C|LTR|ERVL-MaLR -113923 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 126.5-17 chr12 90530806 90531206 + 0.333333 NA Intergenic Intergenic 237688 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 147.167-47 chr5 20234891 20235411 + 0.333333 NA intron (NM_001291956, intron 2 of 14) L1PA16|LINE|L1 -70400 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 148.167-13 chr11 84175544 84176269 + 0.333333 NA intron (NM_001142700, intron 1 of 19) intron (NM_001142700, intron 1 of 19) 97374 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 123.5-9 chr1 213334116 213334784 + 0.333333 NA Intergenic Arthur1|DNA|hAT-Tip100 283209 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 118-103 chr6 39858507 39859038 + 0.333333 NA intron (NM_015345, intron 2 of 24) L2c|LINE|L2 38608 NR_125831 100505635 Hs.668513 NR_125831 ENSG00000235033 LOC100505635 - uncharacterized LOC100505635 ncRNA 139.333-74 chr5 51226390 51226982 + 0.333333 NA Intergenic Intergenic 156646 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 117.833-81 chr8 60787863 60788309 + 0.333333 NA intron (NM_017780, intron 3 of 37) AluSz|SINE|Alu 46827 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 163.667-55 chr4 61435446 61436380 + 0.333333 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 233741 NM_001371342 122.167-14 chr12 40144404 40144868 + 0.333333 NA Intergenic L1M5|LINE|L1 -11603 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 130-9 chr10 10729545 10730012 + 0.333333 NA intron (NM_001326317, intron 2 of 14) AluSz6|SINE|Alu 65136 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 119.333-65 chr3 76600375 76600847 + 0.333333 NA Intergenic THE1B|LTR|ERVL-MaLR -439488 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 150.833-48 chr6 135357080 135357646 + 0.333333 NA intron (NM_017651, intron 23 of 27) Tigger4a|DNA|TcMar-Tigger 118203 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 118.167-56 chr6 140978025 140978426 + 0.333333 NA Intergenic Intergenic 294411 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 125.167-9 chr10 21592429 21592874 + 0.333333 NA intron (NM_001195626, intron 4 of 22) AluYe6|SINE|Alu 58479 NM_001195628 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 145.333-88 chr8 113188618 113189129 + 0.333333 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 188279 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 126.833-18 chr10 99442870 99443311 + 0.333333 NA Intergenic AluSc|SINE|Alu -12466 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 113.667-20 chr10 117989871 117990470 + 0.333333 NA Intergenic Intergenic -56651 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 116.833-52 chr5 110242931 110243324 + 0.333333 NA Intergenic Intergenic 270788 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 134.167-56 chr3 63055523 63055978 + 0.333333 NA Intergenic Intergenic -46938 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 126.5-54 chr21 42094680 42095206 + 0.333333 NA intron (NM_001004416, intron 6 of 22) MLT1D|LTR|ERVL-MaLR 13591 NR_027243 150147 Hs.558646 NM_152507 ENSG00000184385 UMODL1-AS1 C21orf128 UMODL1 antisense RNA 1 ncRNA 114.667-45 chr2 21001937 21002551 + 0.333333 NA exon (NM_000384, exon 29 of 29) exon (NM_000384, exon 29 of 29) 41829 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 146.5-57 chr3 116467961 116468508 + 0.333333 NA Intergenic Intergenic -22747 NM_002338 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 126.333-78 chr3 189982256 189982777 + 0.333333 NA intron (NM_018192, intron 8 of 14) intron (NM_018192, intron 8 of 14) 138381 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 146.5-23 chr12 109963684 109964253 + 0.333333 NA intron (NM_001330153, intron 9 of 18) intron (NM_001330153, intron 9 of 18) 32400 NM_014776 9815 Hs.434996 NM_014776 ENSG00000139436 GIT2 CAT-2|CAT2|PKL GIT ArfGAP 2 protein-coding 122.667-14 chr11 40132714 40133328 + 0.333333 NA intron (NR_047674, intron 1 of 1) intron (NR_047674, intron 1 of 1) 160109 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 124.667-6 chr1 172583119 172583728 + 0.333333 NA intron (NM_001282751, intron 15 of 21) intron (NM_001282751, intron 15 of 21) 50273 NM_014283 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 143.333-9 chr10 120281160 120281716 + 0.333333 NA Intergenic L1PA15|LINE|L1 73785 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 139.167-72 chr9 37887157 37887620 + 0.333333 NA TTS (NM_033412) TTS (NM_033412) 16739 NM_033412 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 126.667-4 chr1 166149227 166149612 + 0.333333 NA intron (NR_163271, intron 1 of 2) MIR3|SINE|MIR 5379 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 125-87 chr7 106537517 106538152 + 0.333333 NA Intergenic Intergenic 123324 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 116.833-61 chr7 101099085 101099667 + 0.333333 NA Intergenic Intergenic 13895 NM_030961 81844 Hs.521092 NM_030961 ENSG00000169871 TRIM56 RNF109 tripartite motif containing 56 protein-coding 200.334-3 chr18 55263126 55264169 + 0.333333 NA intron (NM_001348216, intron 4 of 12) intron (NM_001348216, intron 4 of 12) 39013 NM_001243236 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 115.667-91 chr5 2858297 2858936 + 0.333333 NA Intergenic Intergenic -59238 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 124.667-83 chr3 177635002 177635680 + 0.333333 NA intron (NR_047568, intron 3 of 3) L1PB1|LINE|L1 -181524 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 142.333-74 chr4 26162900 26163405 + 0.333333 NA Intergenic Intergenic -156558 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 126.667-75 chr5 27909955 27910477 + 0.333333 NA Intergenic MSTA|LTR|ERVL-MaLR 377449 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 161.167-31 chr2 57761973 57762717 + 0.333333 NA Intergenic Intergenic -145306 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 137-61 chr2 179983507 179984007 + 0.333333 NA intron (NM_020943, intron 4 of 19) Helitron3Na_Mam|RC|Helitron 23540 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 145.5-89 chr9 118225575 118226438 + 0.333333 NA Intergenic L1MB4|LINE|L1 -453665 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 132.667-39 chr16 7187597 7188329 + 0.333333 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -144882 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 119.667-49 chr2 157332980 157333630 + 0.333333 NA Intergenic MIR|SINE|MIR -5593 NM_001009959 57471 Hs.443894 NM_020711 ENSG00000136541 ERMN JN|KIAA1189 ermin protein-coding 120.167-19 chr14 72511273 72511768 + 0.333333 NA intron (NM_001370288, intron 14 of 16) intron (NM_001370288, intron 14 of 16) -5300 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 118-18 chr10 92421489 92421897 + 0.333333 NA Intergenic L1MC|LINE|L1 3032 NR_038243 100507674 Hs.568772 NR_038243 MARK2P9 - microtubule affinity regulating kinase 2 pseudogene 9 pseudo 145-53 chr21 27169953 27170705 + 0.333333 NA Intergenic Intergenic -203241 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 118.333-36 chr15 24036926 24037470 + 0.333333 NA intron (NR_126392, intron 4 of 5) intron (NR_126392, intron 4 of 5) 62051 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 129.5-33 chr17 76318552 76319113 + 0.333333 NA intron (NM_001366236, intron 7 of 9) intron (NM_001366236, intron 7 of 9) -11152 NR_130649 84074 Hs.252739 NM_032134 ENSG00000129646 QRICH2 SPGF35 glutamine rich 2 protein-coding 139-50 chr5 45602895 45603384 + 0.333333 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 93241 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 122.333-105 chr8 29981620 29982080 + 0.333333 NA Intergenic Intergenic -24502 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 136.333-69 chr4 70877474 70878156 + 0.333333 NA Intergenic L1MC5|LINE|L1 -24554 NM_001244766 92597 Hs.691454 NM_173468 ENSG00000173542 MOB1B MATS2|MOB4A|MOBKL1A MOB kinase activator 1B protein-coding 135-20 chr12 23566096 23566669 + 0.333333 NA intron (NM_152989, intron 13 of 17) intron (NM_152989, intron 13 of 17) 18204 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 120.167-9 chr10 27711002 27711438 + 0.333333 NA intron (NM_001242702, intron 5 of 6) intron (NM_001242702, intron 5 of 6) -33395 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 126.167-29 chr16 73141521 73142189 + 0.333333 NA intron (NM_207385, intron 2 of 3) intron (NM_207385, intron 2 of 3) 2592 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 124.833-87 chr8 57311699 57312123 + 0.333333 NA Intergenic Intergenic -31876 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 139-66 chr6 160337067 160337703 + 0.333333 NA Intergenic MIR|SINE|MIR -10993 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 120-111 chr8 135648597 135649067 + 0.333333 NA Intergenic Intergenic 191376 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 153.833-2 chr1 44473982 44474620 + 0.333333 NA intron (NM_001319957, intron 1 of 13) AluSx|SINE|Alu 50300 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 118-22 chr12 25934559 25935075 + 0.333333 NA Intergenic AluJb|SINE|Alu 22768 NR_038227 100506451 Hs.560092 NR_038227 RASSF8-AS1 - RASSF8 antisense RNA 1 ncRNA 140.833-38 chr20 50812540 50813121 + 0.333333 NA intron (NM_017843, intron 1 of 5) AluJo|SINE|Alu 17936 NM_198799 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 123.5-42 chr2 36526496 36526998 + 0.333333 NA intron (NM_016441, intron 13 of 16) intron (NM_016441, intron 13 of 16) 71421 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 121.167-69 chr5 74729784 74730435 + 0.333333 NA intron (NR_104006, intron 16 of 19) intron (NR_104006, intron 16 of 19) 37008 NM_001281302 84340 Hs.277154 NM_032380 ENSG00000164347 GFM2 EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 G elongation factor mitochondrial 2 protein-coding 134.833-17 chr15 42341413 42341995 + 0.333333 NA intron (NM_198141, intron 18 of 23) AluSx|SINE|Alu -17796 NM_024344 825 Hs.143261 NM_000070 ENSG00000092529 CAPN3 CANP3|CANPL3|LGMD2|LGMD2A|LGMDD4|LGMDR1|nCL-1|p94 calpain 3 protein-coding 114.334 chr8 117236324 117236985 + 0.333333 NA Intergenic Intergenic 101659 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 180.333-42 chr3 81383220 81384093 + 0.333333 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 377989 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 193.667-50 chr7 71441359 71442404 + 0.333333 NA intron (NM_022479, intron 5 of 10) L1PA8|LINE|L1 -134111 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 119.167-41 chr2 42885624 42886022 + 0.333333 NA Intergenic ERVL-B4-int|LTR|ERVL -93240 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 118-100 chr5 145402443 145403051 + 0.333333 NA Intergenic Intergenic 432595 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 116.834-5 chr15 58816297 58816996 + 0.333333 NA intron (NM_001040450, intron 4 of 8) intron (NM_001040450, intron 4 of 8) 45344 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 116.167-38 chr2 197154999 197155553 + 0.333333 NA intron (NM_153697, intron 2 of 9) MIRb|SINE|MIR -42715 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 119-71 chr4 42816110 42816569 + 0.333333 NA Intergenic Intergenic -76927 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 129.5-54 chr20 15803476 15804030 + 0.333333 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 119561 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 141-48 chr2 213745300 213745899 + 0.333333 NA intron (NR_047660, intron 9 of 14) (TTATAG)n|Simple_repeat|Simple_repeat -12468 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 124-106 chrX 95212860 95213466 + 0.333333 NA Intergenic MSTD|LTR|ERVL-MaLR -149937 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 117.333-108 chr8 70733748 70734229 + 0.333333 NA exon (NM_001287258, exon 6 of 6) exon (NM_001287258, exon 6 of 6) 64649 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 113.833-49 chr22 26392657 26393170 + 0.333333 NA Intergenic AluSp|SINE|Alu -36347 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 143-13 chr11 79493338 79493965 + 0.333333 NA Intergenic Intergenic -52621 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 127.833-5 chr1 215098922 215099374 + 0.333333 NA intron (NM_001017424, intron 2 of 6) L1PA13|LINE|L1 16411 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 173.833-24 chr17 26603809 26604348 + 0.333333 NA Intergenic ALR/Alpha|Satellite|centr 485163 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 136.667-81 chr5 76413343 76414157 + 0.333333 NA intron (NM_006633, intron 1 of 35) intron (NM_006633, intron 1 of 35) 10465 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 145-16 chr10 113450894 113451462 + 0.333333 NA Intergenic Intergenic -99653 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 116-4 chr1 164920091 164920710 + 0.333333 NA Intergenic Intergenic -145759 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 115.5-20 chr10 113800016 113800517 + 0.333333 NA Intergenic AluSq2|SINE|Alu -22212 NR_039703 100616162 NR_039703 ENSG00000283656 MIR4483 - microRNA 4483 ncRNA 159.833-16 chr12 27387351 27387968 + 0.333333 NA intron (NM_001248003, intron 5 of 14) intron (NM_001248003, intron 5 of 14) 54823 NM_001248005 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 138-68 chr3 10041753 10042268 + 0.333333 NA intron (NM_001018115, intron 10 of 43) AluSg7|SINE|Alu 15573 NM_033084 2177 Hs.208388 NM_033084 ENSG00000144554 FANCD2 FA-D2|FA4|FACD|FAD|FAD2|FANCD FA complementation group D2 protein-coding 117.167-74 chr5 19307472 19308003 + 0.333333 NA Intergenic LTR12|LTR|ERV1 578535 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 167.333-40 chr20 44440889 44441524 + 0.333333 NA Intergenic AluSz|SINE|Alu 9351 NR_109893 101927242 Hs.143307 NR_109893 ENSG00000168746 LINC01430 - long intergenic non-protein coding RNA 1430 ncRNA 232-6 chr11 14160589 14161300 + 0.333333 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 197541 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 119.167-86 chr6 132807410 132807941 + 0.333333 NA Intergenic L1MEf|LINE|L1 -6894 NM_001016 6206 Hs.546289 NM_001016 ENSG00000112306 RPS12 S12 ribosomal protein S12 protein-coding 126.667-36 chr2 25900454 25901191 + 0.333333 NA Intergenic AluSp|SINE|Alu -22335 NM_018263 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 121.833-25 chr18 3383763 3384306 + 0.333333 NA Intergenic AluJo|SINE|Alu -27893 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 136-32 chr18 21223080 21223877 + 0.333333 NA Intergenic Intergenic -18764 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 115-12 chr10 39082885 39083458 + 0.333333 NA Intergenic LTR14A|LTR|ERVK 386575 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 114.667-19 chr12 26527080 26527579 + 0.333333 NA intron (NM_002223, intron 37 of 56) intron (NM_002223, intron 37 of 56) 305865 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 134.333-25 chr12 41480123 41480705 + 0.333333 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 42675 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 116-6 chr1 185961450 185962142 + 0.333333 NA intron (NM_031935, intron 11 of 106) intron (NM_031935, intron 11 of 106) 227405 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 136.167-63 chr4 169372885 169373506 + 0.333333 NA Intergenic Tigger3c|DNA|TcMar-Tigger -102239 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 128-86 chr7 48197961 48198493 + 0.333333 NA intron (NM_152701, intron 2 of 61) intron (NM_152701, intron 2 of 61) 26769 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 123-39 chr2 11135888 11136517 + 0.333333 NA intron (NM_182500, intron 1 of 3) L1MB1|LINE|L1 3074 NM_001371321 140.167-10 chr11 122412535 122413050 + 0.333333 NA intron (NR_137179, intron 1 of 4) LTR49-int|LTR|ERV1 10079 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 117.5-5 chr1 209240323 209240790 + 0.333333 NA Intergenic Intergenic -84900 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 135.167-87 chr7 62851198 62851645 + 0.333333 NA Intergenic ALR/Alpha|Satellite|centr 452635 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 114.667-88 chr3 162257821 162258451 + 0.333333 NA Intergenic Intergenic 761328 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 115.5-27 chr12 49665756 49666418 + 0.333333 NA intron (NM_001367835, intron 3 of 26) intron (NM_001367835, intron 3 of 26) 35543 NM_001363607 25766 Hs.706827 NM_012272 ENSG00000110844 PRPF40B HYPC pre-mRNA processing factor 40 homolog B protein-coding 194.167-21 chr4 45611026 45611830 + 0.333333 NA Intergenic HERVH48-int|LTR|ERV1 512626 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 119.167-87 chr7 7185556 7186103 + 0.333333 NA intron (NM_020156, intron 1 of 3) intron (NM_020156, intron 1 of 3) 3214 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 143.167-83 chr9 134388640 134389417 + 0.333333 NA intron (NM_001291920, intron 1 of 9) intron (NM_001291920, intron 1 of 9) 9617 NR_039816 100616236 NR_039816 ENSG00000263897 MIR4669 - microRNA 4669 ncRNA 128.167-6 chr10 92649540 92650168 + 0.333333 NA exon (NM_004523, exon 20 of 22) exon (NM_004523, exon 20 of 22) -40101 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 119-38 chr16 56419444 56419953 + 0.333333 NA intron (NM_001144, intron 1 of 13) AluSx|SINE|Alu 5291 NM_001323511 267 Hs.295137 NM_001144 ENSG00000159461 AMFR GP78|RNF45 autocrine motility factor receptor protein-coding 128.5-16 chr11 111244644 111245212 + 0.333333 NA promoter-TSS (NM_198498) promoter-TSS (NM_198498) -797 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 115-44 chr2 210227436 210228087 + 0.333333 NA Intergenic AluJb|SINE|Alu -2314 NM_001608 33 Hs.471277 NM_001608 ENSG00000115361 ACADL ACAD4|LCAD acyl-CoA dehydrogenase long chain protein-coding 140.333-42 chr20 43555125 43555618 + 0.333333 NA Intergenic L1MB4|LINE|L1 -3656 NM_170693 10110 Hs.300863 NM_016276 ENSG00000101049 SGK2 H-SGK2|dJ138B7.2 serum/glucocorticoid regulated kinase 2 protein-coding 161-19 chr15 76845157 76845688 + 0.333333 NA intron (NR_148227, intron 4 of 32) L1MA2|LINE|L1 16522 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 125.333-78 chr3 74697955 74698546 + 0.333333 NA Intergenic Intergenic -177110 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 130.833-10 chr10 128558949 128559430 + 0.333333 NA Intergenic Intergenic 273239 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 139.667-52 chr2 62265152 62265698 + 0.333333 NA Intergenic Intergenic 49904 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 116.167-44 chr3 11579963 11580512 + 0.333333 NA intron (NM_001128219, intron 2 of 4) L1MB3|LINE|L1 2119 NM_001128220 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 122.333-48 chr2 43450626 43451140 + 0.333333 NA intron (NM_001083953, intron 26 of 37) L1MB3|LINE|L1 145091 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 133.333-63 chr20 36090706 36091205 + 0.333333 NA promoter-TSS (NM_001258331) promoter-TSS (NM_001258331) -459 NM_001258331 2036 Hs.437422 NM_012156 ENSG00000088367 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1 like 1 protein-coding 119.167-51 chr20 22330280 22330659 + 0.333333 NA Intergenic L1MA7|LINE|L1 -47668 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 113.167-33 chr2 4719387 4719964 + 0.333333 NA Intergenic L1MA4|LINE|L1 -63453 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 136.5-90 chr8 78704592 78705224 + 0.333333 NA intron (NM_016010, intron 7 of 8) L1PA13|LINE|L1 19466 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 128.167-2 chr1 94226161 94226634 + 0.333333 NA intron (NM_001328665, intron 1 of 21) MIR|SINE|MIR 11187 NM_004815 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 113.834-5 chr7 127036211 127036867 + 0.333333 NA intron (NM_001371085, intron 3 of 10) L4_A_Mam|LINE|RTE-X 21645 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 136.167-55 chr4 32703652 32704259 + 0.333333 NA Intergenic AluSx1|SINE|Alu 352917 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 144.5-23 chr13 51349042 51349486 + 0.333333 NA promoter-TSS (NR_049878) promoter-TSS (NR_049878) -625 NR_049878 100847003 NR_049878 ENSG00000266072 MIR5693 - microRNA 5693 ncRNA 135-52 chr20 47341172 47341839 + 0.333333 NA intron (NM_001281774, intron 3 of 23) AluSz|SINE|Alu 10392 NM_001363741 23613 Hs.446240 NM_012408 ENSG00000101040 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger MYND-type containing 8 protein-coding 122.167-23 chr15 27864641 27865239 + 0.333333 NA intron (NM_001300984, intron 20 of 22) intron (NM_001300984, intron 20 of 22) 234375 NM_000275 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 121.167-59 chr4 42021343 42021843 + 0.333333 NA intron (NM_006345, intron 4 of 17) intron (NM_006345, intron 4 of 17) 31063 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 138.833-44 chr20 1697371 1697872 + 0.333333 NA Intergenic Intergenic -39842 NM_001039508 55423 Hs.590883 NM_018556 ENSG00000089012 SIRPG CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1 signal regulatory protein gamma protein-coding 124.667-65 chr2 229247395 229247961 + 0.333333 NA intron (NM_001330158, intron 1 of 3) L2b|LINE|L2 -15586 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 167.833-8 chr12 49511549 49512239 + 0.333333 NA intron (NM_001293285, intron 10 of 14) L1ME2z|LINE|L1 -27136 NM_012284 23416 Hs.64064 NM_012284 ENSG00000135519 KCNH3 BEC1|ELK2|Kv12.2 potassium voltage-gated channel subfamily H member 3 protein-coding 128.5-73 chr7 45270236 45270868 + 0.333333 NA Intergenic FLAM_A|SINE|Alu 112761 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 137.167-65 chr7 146362677 146363327 + 0.333333 NA Intergenic AluSc|SINE|Alu -411269 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 116.167-58 chr5 8447939 8448570 + 0.333333 NA intron (NR_039984, intron 2 of 5) MLT2D|LTR|ERVL 9310 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 132.334-3 chr14 20450377 20451117 + 0.333333 NA intron (NM_017807, intron 3 of 10) intron (NM_017807, intron 3 of 10) 4065 NM_017807 55644 Hs.525196 NM_017807 ENSG00000092094 OSGEP GAMOS3|GCPL1|KAE1|OSGEP1|PRSMG1|TCS3 O-sialoglycoprotein endopeptidase protein-coding 129-6 chr1 197304631 197305373 + 0.333333 NA intron (NM_001257965, intron 3 of 14) LTR67B|LTR|ERVL 36750 NM_201253 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 132-43 chr2 98664440 98664924 + 0.333333 NA intron (NM_012214, intron 4 of 15) Tigger9b|DNA|TcMar-Tigger -1209 NM_001160154 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 120.333-7 chr1 77364431 77364975 + 0.333333 NA intron (NM_012093, intron 6 of 13) L1MA5A|LINE|L1 81616 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 114-92 chr7 51727240 51727721 + 0.333333 NA Intergenic Intergenic -334224 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 115.667-127 chrX 98717310 98717822 + 0.333333 NA Intergenic L1MEd|LINE|L1 -1153031 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 118.5-89 chr7 27654575 27655090 + 0.333333 NA intron (NM_152740, intron 1 of 7) AluJb|SINE|Alu 8051 NM_152740 11112 Hs.406758 NM_152740 ENSG00000106049 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 144.833-70 chr8 21429730 21430379 + 0.333333 NA Intergenic Intergenic 131815 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 126.833-4 chr1 89374357 89374982 + 0.333333 NA intron (NM_198460, intron 3 of 10) L1MA9|LINE|L1 10792 NM_001320257 163351 Hs.254338 NM_198460 ENSG00000183347 GBP6 - guanylate binding protein family member 6 protein-coding 115.833-44 chr3 44860069 44860577 + 0.333333 NA Intergenic MIRc|SINE|MIR -1565 NR_030290 693149 NR_030290 ENSG00000284498 MIR564 MIRN564|hsa-mir-564 microRNA 564 ncRNA 153.667-83 chr9 31347699 31348260 + 0.333333 NA Intergenic Intergenic 33511 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 128.334-5 chr16 83314903 83315618 + 0.333333 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -193086 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 118-35 chr14 65590427 65590883 + 0.333333 NA intron (NM_178156, intron 2 of 9) intron (NM_178156, intron 2 of 9) 119553 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 177-24 chr17 61741815 61742872 + 0.333333 NA intron (NM_032043, intron 16 of 19) Tigger1|DNA|TcMar-Tigger 121216 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 157.667-24 chr14 79240433 79241110 + 0.333333 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -38609 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 132.833-61 chr7 96135566 96136051 + 0.333333 NA intron (NM_001160210, intron 14 of 17) intron (NM_001160210, intron 14 of 17) 83948 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 136.834-4 chr2 126844186 126844929 + 0.333333 NA Intergenic L1ME2z|LINE|L1 -54333 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 148.167-22 chr15 35526968 35527491 + 0.333333 NA intron (NM_001141972, intron 3 of 3) intron (NM_001141972, intron 3 of 3) 18936 NM_001141972 89978 Hs.107196 NM_080650 ENSG00000134146 DPH6 ATPBD4 diphthamine biosynthesis 6 protein-coding 134.833-27 chr2 67034946 67035445 + 0.333333 NA Intergenic Intergenic -51251 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 117-44 chr18 1952860 1953524 + 0.333333 NA Intergenic MER49|LTR|ERV1 -593563 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 151.5-18 chr12 16500789 16501346 + 0.333333 NA Intergenic AluSc|SINE|Alu 104312 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 151.833-19 chr16 53582421 53582985 + 0.333333 NA Intergenic L1MB8|LINE|L1 -79399 NM_001308325 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 136.834-7 chr8 125057393 125058195 + 0.333333 NA intron (NM_014846, intron 14 of 28) intron (NM_014846, intron 14 of 28) 33998 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 127-62 chr3 16046258 16046791 + 0.333333 NA Intergenic Intergenic -128156 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 137.667-100 chrX 47006888 47007586 + 0.333333 NA intron (NM_001077445, intron 4 of 10) L1MDa|LINE|L1 -71118 NM_001282849 9104 Hs.77854 NM_004683 ENSG00000130988 RGN GNL|HEL-S-41|RC|SMP30 regucalcin protein-coding 113.333-105 chr8 86373015 86373512 + 0.333333 NA intron (NM_007013, intron 2 of 24) L1ME3F|LINE|L1 30716 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 185.833-19 chr2 61937646 61938231 + 0.333333 NA intron (NM_152516, intron 1 of 2) MER4B-int|LTR|ERV1 32296 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 121.333-120 chr9 127076033 127076560 + 0.333333 NA intron (NM_001190729, intron 8 of 17) intron (NM_001190729, intron 8 of 17) 46339 NM_012098 23452 Hs.653262 NM_012098 ENSG00000136859 ANGPTL2 ARP2|HARP angiopoietin like 2 protein-coding 124.333-59 chr3 60103171 60103692 + 0.333333 NA intron (NM_001320900, intron 6 of 9) MER34D|LTR|ERV1 -22522 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 113.334-6 chr4 72227618 72228281 + 0.333333 NA Intergenic L2a|LINE|L2 188817 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 141.833-27 chr4 35273788 35274294 + 0.333333 NA Intergenic Intergenic 969898 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 115-86 chr8 120565445 120565900 + 0.333333 NA intron (NM_021021, intron 4 of 6) intron (NM_021021, intron 4 of 6) 120253 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 114.833-59 chr6 63011643 63012165 + 0.333333 NA Intergenic Intergenic 308073 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 143.5-84 chr8 60031354 60031812 + 0.333333 NA Intergenic Intergenic 249817 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 144.833-23 chr16 50456444 50456992 + 0.333333 NA Intergenic Intergenic -61585 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 119.667-40 chr2 27236103 27236653 + 0.333333 NA exon (NM_004341, exon 26 of 44) exon (NM_004341, exon 26 of 44) 18988 NM_001306079 790 Hs.377010 NM_004341 ENSG00000084774 CAD CDG1Z|EIEE50|GATD4 carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase protein-coding 156.167-18 chr12 77622088 77622805 + 0.333333 NA Intergenic AluYm1|SINE|Alu -208448 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 165.167 chr1 143272480 143273025 + 0.333333 NA Intergenic Intergenic 149840 NR_027354 645166 Hs.744183 NR_027354 LSP1P5 - LSP1 pseudogene 5 pseudo 149.167-40 chr3 69298874 69299619 + 0.333333 NA intron (NM_015123, intron 4 of 22) intron (NM_015123, intron 4 of 22) 86842 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 118-75 chr3 3643981 3644506 + 0.333333 NA Intergenic MIR3|SINE|MIR -155188 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 147.833-32 chr2 24378944 24379562 + 0.333333 NA Intergenic AluSp|SINE|Alu -18717 NM_001348181 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 115.167-89 chr6 6690112 6690556 + 0.333333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -67508 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 113.667-109 chr6 62898798 62899372 + 0.333333 NA Intergenic Intergenic 420892 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 114-11 chr10 25960923 25961371 + 0.333333 NA intron (NM_001368265, intron 4 of 7) intron (NM_001368265, intron 4 of 7) 26918 NM_001368265 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 143.834-2 chr15 51468569 51469372 + 0.333333 NA intron (NM_001174116, intron 29 of 42) L1MC5|LINE|L1 91724 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 115.167-105 chr8 88197471 88197907 + 0.333333 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 129794 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 148.5-58 chr5 32875544 32876285 + 0.333333 NA Intergenic L1MA5A|LINE|L1 -71529 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 149-50 chr22 23183136 23183732 + 0.333333 NA intron (NM_004327, intron 1 of 22) intron (NM_004327, intron 1 of 22) 2925 NM_021574 613 Hs.517461 NM_004327 ENSG00000186716 BCR ALL|BCR1|CML|D22S11|D22S662|PHL BCR activator of RhoGEF and GTPase protein-coding 115.833-50 chr4 31962444 31962817 + 0.333333 NA Intergenic Intergenic -34749 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 139.333-66 chr4 53502000 53502456 + 0.333333 NA intron (NR_046622, intron 3 of 3) intron (NR_046622, intron 3 of 3) 2151 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 113.167-86 chrX 100034169 100034811 + 0.333333 NA Intergenic Intergenic 375783 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 129.667-24 chr12 81341466 81342018 + 0.333333 NA intron (NM_001282536, intron 16 of 29) intron (NM_001282536, intron 16 of 29) 27627 NM_001220479 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 138-35 chr15 42953214 42953714 + 0.333333 NA intron (NM_174916, intron 44 of 46) intron (NM_174916, intron 44 of 46) -32686 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 163-18 chr14 42447925 42448758 + 0.333333 NA Intergenic Intergenic 841485 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 132-98 chr9 32660038 32660499 + 0.333333 NA Intergenic THE1B-int|LTR|ERVL-MaLR -24599 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 121.667-24 chr14 60927641 60928034 + 0.333333 NA intron (NM_001177963, intron 6 of 6) MER45C|DNA|hAT-Tip100 53242 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 126.5-37 chr18 673815 674461 + 0.333333 NA TTS (NM_001071) TTS (NM_001071) -15847 NM_001012716 494514 Hs.274959 NM_001012716 TYMSOS C18orf56 TYMS opposite strand protein-coding 126.333-39 chr16 61275939 61276525 + 0.333333 NA Intergenic Intergenic -220466 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 152.5-14 chr14 101849075 101849947 + 0.333333 NA intron (NM_001352916, intron 2 of 13) L1ME3B|LINE|L1 39648 NM_001352912 5527 Hs.368264 NM_002719 ENSG00000078304 PPP2R5C B56G|B56gamma|PR61G protein phosphatase 2 regulatory subunit B'gamma protein-coding 134.667-40 chr17 60231210 60231835 + 0.333333 NA TTS (NR_002999) TTS (NR_002999) 123 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 119.5-32 chr14 68350822 68351180 + 0.333333 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 277786 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 140-54 chr3 182445795 182446364 + 0.333333 NA TTS (NR_040105) TTS (NR_040105) 40283 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 115.667-58 chr2 165197396 165197862 + 0.333333 NA intron (NM_006922, intron 1 of 27) intron (NM_006922, intron 1 of 27) 6421 NM_006922 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 117.667-28 chr11 75108872 75109433 + 0.333333 NA Intergenic MIRc|SINE|MIR -12262 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 137.333-3 chr1 99474450 99474957 + 0.333333 NA intron (NR_125951, intron 2 of 2) intron (NR_125951, intron 2 of 2) 13101 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 149.167-53 chr6 70080807 70081302 + 0.333333 NA intron (NM_001858, intron 15 of 50) intron (NM_001858, intron 15 of 50) 202143 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 131.833-2 chr1 170758098 170758753 + 0.333333 NA Intergenic MSTA|LTR|ERVL-MaLR 94294 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 120.333-53 chr2 61887369 61887879 + 0.333333 NA intron (NM_001256721, intron 1 of 12) intron (NM_001256721, intron 1 of 12) 1032 NM_006430 10575 Hs.421509 NM_006430 ENSG00000115484 CCT4 CCT-DELTA|Cctd|SRB chaperonin containing TCP1 subunit 4 protein-coding 119.833-54 chr22 37834218 37834835 + 0.333333 NA intron (NM_001349853, intron 3 of 7) AluJb|SINE|Alu 9322 NM_001363839 129138 Hs.135259 NM_138797 ENSG00000100124 ANKRD54 LIAR ankyrin repeat domain 54 protein-coding 143-20 chr12 84953206 84953916 + 0.333333 NA Intergenic Intergenic -40732 NM_018057 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 124.5-66 chr6 143349413 143349919 + 0.333333 NA Intergenic L1MA5|LINE|L1 93011 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 150-69 chr6 49028263 49028847 + 0.333333 NA Intergenic MIRb|SINE|MIR 434698 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 124-5 chr1 98122931 98123464 + 0.333333 NA Intergenic Intergenic -73504 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 147.333-86 chr7 82562204 82562717 + 0.333333 NA Intergenic AluJr|SINE|Alu -118504 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 123-6 chr10 42374094 42374669 + 0.333333 NA Intergenic AluSx1|SINE|Alu -6336 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 182.667-27 chr18 9972464 9973381 + 0.333333 NA Intergenic MLT1D|LTR|ERVL-MaLR 58906 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 114.5-28 chr12 99658798 99659259 + 0.333333 NA intron (NM_152788, intron 8 of 25) intron (NM_152788, intron 8 of 25) 11275 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 124.667-21 chr12 19377192 19377719 + 0.333333 NA Intergenic AluSg|SINE|Alu -62037 NM_153207 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 113.333-55 chr2 162192029 162192472 + 0.333333 NA intron (NM_004460, intron 17 of 25) L2c|LINE|L2 -40003 NM_002054 2641 Hs.516494 NM_002054 ENSG00000115263 GCG GLP-1|GLP1|GLP2|GRPP glucagon protein-coding 129.333-50 chr2 146965190 146965847 + 0.333333 NA Intergenic MIRb|SINE|MIR 378461 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 135.667-18 chr10 81776231 81776735 + 0.333333 NA Intergenic Intergenic -98711 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 125.834-3 chr4 156828603 156829325 + 0.333333 NA intron (NM_016205, intron 2 of 5) intron (NM_016205, intron 2 of 5) 142835 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 137-6 chr1 204548933 204549536 + 0.333333 NA exon (NM_001278519, exon 5 of 5) exon (NM_001278519, exon 5 of 5) 32828 NM_002393 4194 Hs.497492 NM_002393 ENSG00000198625 MDM4 HDMX|MDMX|MRP1 MDM4 regulator of p53 protein-coding 162.667 chr1 17173915 17174599 + 0.333333 NA Intergenic L2a|LINE|L2 -15532 NR_148993 400743 Hs.522935 NR_148993 ENSG00000204362 LINC02783 - long intergenic non-protein coding RNA 2783 ncRNA 119.5-11 chr1 223193196 223193594 + 0.333333 NA Intergenic Intergenic -50147 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 125.667-49 chr19 10609565 10610116 + 0.333333 NA intron (NM_001145056, intron 1 of 21) AluSz|SINE|Alu 7385 NM_001145056 57153 Hs.534560 NM_020428 ENSG00000129353 SLC44A2 CTL2|PP1292 solute carrier family 44 member 2 protein-coding 130.333-3 chr1 52191717 52192323 + 0.333333 NA intron (NM_007324, intron 1 of 17) MamRTE1|LINE|RTE-BovB 49926 NM_004799 9372 Hs.532345 NM_004799 ENSG00000157077 ZFYVE9 MADHIP|NSP|PPP1R173|SARA|SMADIP zinc finger FYVE-type containing 9 protein-coding 146.333-2 chr1 116310492 116311066 + 0.333333 NA Intergenic Intergenic -62465 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 122.333-5 chr1 106327630 106328108 + 0.333333 NA Intergenic Intergenic -299616 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 205.167-26 chr22 21109992 21110798 + 0.333333 NA intron (NR_037566, intron 1 of 5) L1M2|LINE|L1 7379 NR_037566 400892 Hs.745077 NM_207474 BCRP2 BCR-2|BCR2|BCRL2 BCR pseudogene 2 pseudo 128.333-4 chr1 119213376 119213927 + 0.333333 NA intron (NR_125975, intron 4 of 6) AluSx|SINE|Alu -72979 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 125.5-80 chr8 74728900 74729562 + 0.333333 NA intron (NR_033830, intron 4 of 5) intron (NR_033830, intron 4 of 5) 23538 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 121-66 chr4 167674903 167675552 + 0.333333 NA Intergenic AluJo|SINE|Alu -417310 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 141.333-83 chr6 51694351 51694788 + 0.333333 NA intron (NM_138694, intron 60 of 66) (T)n|Simple_repeat|Simple_repeat 72699 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 149.5-57 chr6 142493739 142494295 + 0.333333 NA Intergenic L1PREC2|LINE|L1 143819 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 122.333-6 chr1 162508078 162508478 + 0.333333 NA intron (NM_144624, intron 4 of 6) AluSz|SINE|Alu 10460 NM_175866 127933 Hs.127310 NM_144624 ENSG00000152332 UHMK1 KIS|KIST|P-CIP2 U2AF homology motif kinase 1 protein-coding 121.667-110 chrX 87793531 87793963 + 0.333333 NA Intergenic L1PB|LINE|L1 275945 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 156-5 chr1 150135129 150135903 + 0.333333 NA intron (NR_103998, intron 13 of 13) AluSq2|SINE|Alu -13918 NM_001304724 51177 Hs.438824 NM_016274 ENSG00000023902 PLEKHO1 CKIP-1|CKIP1|JBP|OC120 pleckstrin homology domain containing O1 protein-coding 120-12 chr10 52287233 52287792 + 0.333333 NA intron (NM_001098512, intron 14 of 17) intron (NM_001098512, intron 14 of 17) 26616 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 118.333-54 chr2 163453872 163454502 + 0.333333 NA Intergenic L2c|LINE|L2 281821 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 114.333-49 chr17 26696127 26696639 + 0.333333 NA Intergenic ALR/Alpha|Satellite|centr 392858 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 182-2 chr1 170327600 170328577 + 0.333333 NA Intergenic MIRb|SINE|MIR -43880 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 121.167-12 chr1 220585546 220585922 + 0.333333 NA intron (NM_018650, intron 3 of 17) Charlie25|DNA|hAT-Charlie 57551 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 129.5-92 chr9 129528034 129528651 + 0.333333 NA Intergenic AluSz|SINE|Alu 39682 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 MetaLnc9 long intergenic non-protein coding RNA 963 ncRNA 134.167-60 chr4 38716983 38717538 + 0.333333 NA Intergenic AluSx|SINE|Alu -52632 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 149.667-79 chr9 75017271 75017816 + 0.333333 NA intron (NR_135282, intron 1 of 6) intron (NR_135282, intron 1 of 6) 9608 NM_001320497 138199 Hs.567688 NM_152420 ENSG00000156017 CARNMT1 C9orf41|UPF0586 carnosine N-methyltransferase 1 protein-coding 152.667-63 chr4 30439280 30440091 + 0.333333 NA Intergenic L1MEg2|LINE|L1 -280684 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 130.833-59 chr6 47193595 47194161 + 0.333333 NA Intergenic Intergenic 116027 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 151.667-93 chr9 28137658 28138223 + 0.333333 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -564074 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 123.167-34 chr16 66303688 66304164 + 0.333333 NA Intergenic MIRb|SINE|MIR -62765 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 123.167-82 chr5 87702985 87703667 + 0.333333 NA Intergenic Intergenic 41284 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 140.334-2 chr13 72255790 72256573 + 0.333333 NA Intergenic Intergenic -388977 NM_001366712 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 118.5-62 chr22 20385050 20385472 + 0.333333 NA Intergenic AluJr4|SINE|Alu -8854 NM_001256524 7625 Hs.517418 NM_003426 ENSG00000185252 ZNF74 COS52|ZFP520|ZNF520|hZNF7 zinc finger protein 74 protein-coding 129.667-39 chr15 64236816 64237241 + 0.333333 NA intron (NM_001329607, intron 4 of 11) L1PB4|LINE|L1 -73873 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 121.833-35 chr2 117324576 117325204 + 0.333333 NA Intergenic Intergenic -489801 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 177.167-25 chr3 89765604 89766208 + 0.333333 NA Intergenic Intergenic 658285 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 114.167-8 chr10 75651711 75652057 + 0.333333 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) 4375 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 145.333-66 chr5 155501591 155502134 + 0.333333 NA Intergenic L1MEd|LINE|L1 488107 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 118.5-93 chr8 92694009 92694591 + 0.333333 NA Intergenic Intergenic -38806 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 122.5-89 chr7 41763120 41763539 + 0.333333 NA intron (NR_027118, intron 2 of 3) intron (NR_027118, intron 2 of 3) -60239 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 155.5-37 chr3 114328587 114329264 + 0.333333 NA non-coding (NR_121662, exon 7 of 7) non-coding (NR_121662, exon 7 of 7) -12356 NR_030293 693153 NR_030293 ENSG00000284134 MIR568 MIRN568|hsa-mir-568 microRNA 568 ncRNA 123.5-31 chr15 57837973 57838539 + 0.333333 NA Intergenic L1M5|LINE|L1 131542 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 121.667-109 chr9 104956939 104957373 + 0.333333 NA Intergenic AluSp|SINE|Alu -29001 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 114-5 chr1 80027495 80027928 + 0.333333 NA Intergenic LTR1A2|LTR|ERV1 -508044 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 139.667-18 chr11 99535283 99535844 + 0.333333 NA intron (NM_001243271, intron 2 of 20) MER5B|DNA|hAT-Charlie -20582 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 137-77 chr4 147018113 147018545 + 0.333333 NA Intergenic AluSz6|SINE|Alu -72443 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 117-60 chr2 229257660 229258315 + 0.333333 NA intron (NM_001330158, intron 1 of 3) intron (NM_001330158, intron 1 of 3) 13300 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 137.333-4 chr1 103549620 103550081 + 0.333333 NA intron (NM_017619, intron 12 of 14) MIR3|SINE|MIR -4794 NM_020978 280 Hs.484588 NM_020978 ENSG00000240038 AMY2B AMY2|AMY3|HXA amylase alpha 2B (pancreatic) protein-coding 152.833-48 chr4 63812975 63813733 + 0.333333 NA Intergenic L1PA13|LINE|L1 596096 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 122-23 chr16 22062601 22063301 + 0.333333 NA intron (NM_001164579, intron 1 of 2) AluSx|SINE|Alu -29590 NM_173615 146177 Hs.10697 NM_173615 ENSG00000175267 VWA3A - von Willebrand factor A domain containing 3A protein-coding 131.334-6 chr5 33402853 33403581 + 0.333333 NA Intergenic Intergenic -37479 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 120.5-30 chr14 62421300 62421866 + 0.333333 NA Intergenic MER124|DNA?|DNA? -281610 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 154.833-21 chr17 49649479 49650205 + 0.333333 NA intron (NM_001007229, intron 1 of 10) AluY|SINE|Alu -3324 NM_001370731 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 130.167-36 chr20 1241512 1241955 + 0.333333 NA intron (NM_001136566, intron 8 of 13) intron (NM_001136566, intron 8 of 13) 15613 NM_001136566 642636 Hs.713451 NM_001136566 ENSG00000244588 RAD21L1 RAD21L|dJ545L17.2 RAD21 cohesin complex component like 1 protein-coding 129.334-5 chr8 50190287 50190973 + 0.333333 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 26499 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 113.833-84 chr7 103707701 103708251 + 0.333333 NA intron (NM_005045, intron 8 of 64) intron (NM_005045, intron 8 of 64) -261769 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 126-30 chr14 61649287 61649755 + 0.333333 NA intron (NR_039985, intron 1 of 2) L1MC3|LINE|L1 -45992 NM_001530 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 117.333-66 chr3 5126863 5127389 + 0.333333 NA intron (NM_018184, intron 1 of 6) MIR3|SINE|MIR 4834 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 148.333-112 chr9 133609898 133610476 + 0.333333 NA Intergenic MIR|SINE|MIR -26176 NM_000787 1621 Hs.591890 NM_000787 ENSG00000123454 DBH DBM|ORTHYP1 dopamine beta-hydroxylase protein-coding 126.333-63 chr2 185549992 185550584 + 0.333333 NA Intergenic Charlie10|DNA|hAT-Charlie 188431 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 121.5-75 chr4 64833366 64834084 + 0.333333 NA Intergenic L1PB1|LINE|L1 170775 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 138.333-106 chr8 90650831 90651460 + 0.333333 NA Intergenic Intergenic -5062 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 126.333-47 chr17 61971481 61972042 + 0.333333 NA intron (NM_005121, intron 17 of 29) AluSx|SINE|Alu -43779 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 138-43 chr17 61858688 61859226 + 0.333333 NA intron (NM_032043, intron 3 of 19) AluJr4|SINE|Alu 4602 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 126.667-6 chr1 183343881 183344523 + 0.333333 NA intron (NM_015039, intron 1 of 10) MIRb|SINE|MIR -39328 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 124-105 chr9 105952330 105952949 + 0.333333 NA Intergenic L1MEf|LINE|L1 258098 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 126.167-42 chr2 99111532 99112169 + 0.333333 NA intron (NM_001349012, intron 2 of 18) intron (NM_001349012, intron 2 of 18) 29330 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 115.667-106 chr6 76839919 76840547 + 0.333333 NA Intergenic Intergenic -246610 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 119.667-62 chr3 67269237 67269896 + 0.333333 NA Intergenic Intergenic 44102 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 161.333-67 chr7 2411075 2411800 + 0.333333 NA intron (NM_018641, intron 1 of 1) intron (NM_018641, intron 1 of 1) 7826 NM_001243795 55501 Hs.288853 NM_018641 ENSG00000136213 CHST12 C4S-2|C4ST-2|C4ST2 carbohydrate sulfotransferase 12 protein-coding 113.167-77 chr8 127465374 127465926 + 0.333333 NA intron (NR_024393, intron 4 of 4) MLT1I|LTR|ERVL-MaLR 16489 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 159.333-9 chr10 7181184 7181815 + 0.333333 NA intron (NM_001029880, intron 16 of 20) intron (NM_001029880, intron 16 of 20) 5285 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 156.667-57 chr2 202268869 202269541 + 0.333333 NA intron (NM_015934, intron 1 of 14) AluSz|SINE|Alu 3442 NM_015934 51602 Hs.471104 NM_015934 ENSG00000055044 NOP58 HSPC120|NOP5|NOP5/NOP58 NOP58 ribonucleoprotein protein-coding 128.167-51 chr3 56769209 56769771 + 0.333333 NA intron (NM_001128615, intron 5 of 12) intron (NM_001128615, intron 5 of 12) 6227 NM_001128616 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 124.667-120 chr8 69432078 69432759 + 0.333333 NA intron (NR_110433, intron 2 of 3) L1MC5|LINE|L1 15826 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 128-28 chr14 44838160 44838668 + 0.333333 NA Intergenic Intergenic -39288 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 123.667-81 chr4 181391842 181392337 + 0.333333 NA Intergenic Intergenic -127060 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 130.5-77 chr9 6536027 6536625 + 0.333333 NA intron (NM_000170, intron 22 of 24) L1ME4a|LINE|L1 109366 NM_000170 2731 Hs.584238 NM_000170 ENSG00000178445 GLDC GCE|GCSP|HYGN1 glycine decarboxylase protein-coding 133-28 chr14 40242454 40243071 + 0.333333 NA Intergenic MER4A|LTR|ERV1 -711949 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 121-4 chr1 98938503 98939165 + 0.333333 NA intron (NM_001037317, intron 3 of 5) L1PA13|LINE|L1 -65442 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 136.833-12 chr11 82658245 82658807 + 0.333333 NA Intergenic THE1C|LTR|ERVL-MaLR 75338 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 114.333-23 chr11 130202473 130202919 + 0.333333 NA intron (NM_021978, intron 16 of 18) intron (NM_021978, intron 16 of 18) 42914 NM_021978 6768 Hs.504315 NM_021978 ENSG00000149418 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 protein-coding 137.167-44 chr4 40443815 40444294 + 0.333333 NA intron (NM_001098634, intron 3 of 6) AluJb|SINE|Alu 58065 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 133.5-81 chr8 76822959 76823519 + 0.333333 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -139964 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 113.167-25 chr17 35001309 35001734 + 0.333333 NA intron (NM_013975, intron 17 of 19) intron (NM_013975, intron 17 of 19) 21009 NM_013975 3980 Hs.100299 NM_002311 ENSG00000005156 LIG3 LIG2|LIG3alpha DNA ligase 3 protein-coding 118-12 chr10 16295305 16295733 + 0.333333 NA Intergenic Intergenic -141424 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 120.833-9 chr11 34785768 34786259 + 0.333333 NA Intergenic L1M4|LINE|L1 -130117 NM_001135024 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 125-75 chr6 55659359 55659819 + 0.333333 NA Intergenic Intergenic -80375 NM_001287753 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 127.667-28 chr15 62634163 62634637 + 0.333333 NA Intergenic (TTATTT)n|Simple_repeat|Simple_repeat 10781 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 122.5-17 chr11 86023815 86024293 + 0.333333 NA intron (NM_001008660, intron 3 of 19) AluJr|SINE|Alu 45030 NM_001206946 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 159.5-38 chr4 60289031 60289945 + 0.333333 NA Intergenic Intergenic -633131 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 131.334-7 chr7 108283824 108284555 + 0.333333 NA intron (NM_001371171, intron 3 of 28) intron (NM_001371171, intron 3 of 28) -40804 NM_001371182 156.5-50 chr2 184720500 184721256 + 0.333333 NA intron (NM_194250, intron 1 of 3) L1MA4A|LINE|L1 122349 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 115.667-89 chr4 103360988 103361609 + 0.333333 NA Intergenic MSTA|LTR|ERVL-MaLR -63744 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 125.833-51 chr20 49411556 49412165 + 0.333333 NA intron (NM_004975, intron 1 of 1) intron (NM_004975, intron 1 of 1) 70808 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 164.833-20 chr16 59108248 59108928 + 0.333333 NA Intergenic Intergenic -374272 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 142.5-20 chr13 105481254 105481761 + 0.333333 NA intron (NM_172370, intron 3 of 4) L2c|LINE|L2 15291 NM_001161812 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 116.833-24 chr19 41023552 41024133 + 0.333333 NA Intergenic MIRb|SINE|MIR 32560 NM_000767 1555 Hs.1360 NM_000767 ENSG00000197408 CYP2B6 CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450 cytochrome P450 family 2 subfamily B member 6 protein-coding 200-42 chr20 37028862 37029861 + 0.333333 NA intron (NM_002895, intron 16 of 21) MER8|DNA|TcMar-Tigger 66636 NM_183404 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 130.167 chr1 23586106 23586725 + 0.333333 NA Intergenic AluSg|SINE|Alu -26914 NM_002167 3399 Hs.76884 NM_002167 ENSG00000117318 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, HLH protein protein-coding 146-23 chr14 87069707 87070456 + 0.333333 NA Intergenic Intergenic 164303 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 120.833-62 chr6 56609919 56610440 + 0.333333 NA intron (NM_001144770, intron 36 of 94) intron (NM_001144770, intron 36 of 94) 32710 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 115.333-69 chr3 46397635 46398185 + 0.333333 NA intron (NR_125406, intron 1 of 3) intron (NR_125406, intron 1 of 3) 9149 NR_125406 102724297 Hs.622021 NR_125406 LOC102724297 - uncharacterized LOC102724297 ncRNA 135.834-2 chr5 138176848 138177567 + 0.333333 NA intron (NM_001164326, intron 2 of 19) AluSc|SINE|Alu 1423 NM_001300962 10902 Hs.519337 NM_006696 ENSG00000112983 BRD8 SMAP|SMAP2|p120 bromodomain containing 8 protein-coding 133.5-35 chr2 114997188 114997735 + 0.333333 NA intron (NM_001321910, intron 2 of 26) AluSc|SINE|Alu -67112 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 137.333-92 chr7 34142183 34142768 + 0.333333 NA intron (NM_133468, intron 14 of 15) intron (NM_133468, intron 14 of 15) 236936 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 124.167-26 chr14 88406072 88406619 + 0.333333 NA intron (NM_001040428, intron 3 of 10) L1MB8|LINE|L1 20688 NM_018418 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 125.333-64 chr2 76783857 76784375 + 0.333333 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -201849 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 142.833-48 chr4 20392638 20393150 + 0.333333 NA intron (NR_037876, intron 1 of 3) Tigger3b|DNA|TcMar-Tigger 705 NR_037876 100505893 Hs.665305 NR_037876 ENSG00000248228 SLIT2-IT1 - SLIT2 intronic transcript 1 ncRNA 127.5-56 chr5 79214613 79215249 + 0.333333 NA Intergenic AluSz|SINE|Alu -21200 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 113.667-105 chr5 151873879 151874511 + 0.333333 NA intron (NM_000171, intron 3 of 8) intron (NM_000171, intron 3 of 8) 50656 NM_000171 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 148.833-12 chr12 53719514 53720173 + 0.333333 NA intron (NM_001143682, intron 6 of 13) intron (NM_001143682, intron 6 of 13) 7609 NR_026554 57658 Hs.156667 NM_020898 ENSG00000012822 CALCOCO1 Cocoa|PP13275|calphoglin calcium binding and coiled-coil domain 1 protein-coding 140.334 chr12 48610497 48611232 + 0.333333 NA Intergenic L1PA11|LINE|L1 -40818 NM_002289 3906 Hs.72938 NM_002289 ENSG00000167531 LALBA LYZG lactalbumin alpha protein-coding 123.333-10 chr1 195071693 195072215 + 0.333333 NA Intergenic L2a|LINE|L2 1016761 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 124.167-18 chr12 114943185 114943801 + 0.333333 NA Intergenic Intergenic -259318 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 114.167-19 chr11 131937189 131937655 + 0.333333 NA intron (NR_147849, intron 2 of 6) intron (NR_147849, intron 2 of 6) 26604 NM_001352008 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 127.167-73 chr6 15883402 15883888 + 0.333333 NA Intergenic AluSp|SINE|Alu -220587 NM_001271668 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 130.167-39 chr21 23153165 23153908 + 0.333333 NA Intergenic Intergenic 74252 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 117.833-7 chr10 99120287 99120662 + 0.333333 NA intron (NM_021828, intron 3 of 11) L1PA13|LINE|L1 115401 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 125.833-13 chr11 29438170 29438716 + 0.333333 NA Intergenic L1MC2|LINE|L1 -155970 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 113.667-100 chr5 41215282 41215784 + 0.333333 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) -2001 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 141-69 chr4 124499632 124500344 + 0.333333 NA TTS (NR_110838) TTS (NR_110838) 58446 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 128.167 chr1 40494774 40495291 + 0.333333 NA exon (NM_001320179, exon 6 of 6) exon (NM_001320179, exon 6 of 6) -13687 NM_001346951 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 129 chr1 39028766 39029481 + 0.333333 NA intron (NM_001184979, intron 2 of 2) AluSq10|SINE|Alu 2773 NM_004552 4725 Hs.632385 NM_004552 ENSG00000168653 NDUFS5 CI-15k|CI15K NADH:ubiquinone oxidoreductase subunit S5 protein-coding 130.5-25 chr15 70941346 70941930 + 0.333333 NA intron (NM_017691, intron 8 of 15) intron (NM_017691, intron 8 of 15) 49195 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 133.5-80 chr8 62350879 62351436 + 0.333333 NA intron (NM_001304533, intron 1 of 6) (TA)n|Simple_repeat|Simple_repeat 102303 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 130.833-64 chr7 3055106 3055546 + 0.333333 NA Intergenic AluY|SINE|Alu -11459 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 117.167-18 chr13 63574162 63574608 + 0.333333 NA Intergenic Intergenic -163050 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 185.834-2 chr12 104488905 104489955 + 0.333333 NA intron (NM_018413, intron 1 of 2) MLT1B|LTR|ERVL-MaLR 32482 NM_018413 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537|OCBMD carbohydrate sulfotransferase 11 protein-coding 114.167-47 chr2 115527960 115528464 + 0.333333 NA intron (NM_001321912, intron 6 of 25) L1PA5|LINE|L1 184397 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 145.5-84 chr8 114267749 114268396 + 0.333333 NA Intergenic AluY|SINE|Alu -831133 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 118.333-12 chr11 16141233 16141678 + 0.333333 NA intron (NM_033326, intron 6 of 15) L1PA5|LINE|L1 -171834 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 178.167-50 chr8 101939812 101940507 + 0.333333 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -44273 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 164-62 chr6 110239564 110240202 + 0.333333 NA Intergenic L1MA8|LINE|L1 59456 NM_015891 51362 Hs.428147 NM_015891 ENSG00000168438 CDC40 EHB3|PRP17|PRPF17 cell division cycle 40 protein-coding 115.5-45 chr16 28307228 28307850 + 0.333333 NA intron (NM_001024401, intron 1 of 3) AluSz|SINE|Alu 15014 NM_001024401 388228 Hs.97837 NM_001024401 ENSG00000188322 SBK1 SBK SH3 domain binding kinase 1 protein-coding 141.334-2 chr1 223611713 223612507 + 0.333333 NA intron (NM_001143962, intron 11 of 20) intron (NM_001143962, intron 11 of 20) 53591 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 131.333-107 chr9 32061017 32061492 + 0.333333 NA Intergenic Intergenic -323349 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 154.167-26 chr17 56816658 56817181 + 0.333333 NA intron (NM_001085430, intron 4 of 7) AluJo|SINE|Alu 17001 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 140.167-76 chr9 108897081 108897677 + 0.333333 NA intron (NM_001330749, intron 20 of 34) intron (NM_001330749, intron 20 of 34) 35113 NM_006687 10881 Hs.123530 NM_006687 ENSG00000187003 ACTL7A - actin like 7A protein-coding 129.833-55 chr5 32251849 32252452 + 0.333333 NA intron (NM_001294344, intron 8 of 13) intron (NM_001294344, intron 8 of 13) 60789 NM_001294343 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 146.5-58 chr3 181236837 181237446 + 0.333333 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 5404 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 132-6 chr1 152093874 152094449 + 0.333333 NA Intergenic HAL1ME|LINE|L1 -5097 NM_001008536 126637 Hs.546477 NM_001008536 ENSG00000182898 TCHHL1 S100A17|THHL1 trichohyalin like 1 protein-coding 114.333-46 chr16 76458428 76458864 + 0.333333 NA intron (NM_001322187, intron 9 of 24) MER1A|DNA|hAT-Charlie 148794 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 115-89 chr9 96176543 96177187 + 0.333333 NA Intergenic L2a|LINE|L2 -60454 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 119.333-89 chr5 162009348 162009832 + 0.333333 NA Intergenic L1PB2|LINE|L1 -8394 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 137.333-108 chr9 9865889 9866302 + 0.333333 NA intron (NM_002839, intron 5 of 45) intron (NM_002839, intron 5 of 45) 66703 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 118-14 chr10 28975223 28975668 + 0.333333 NA Intergenic Intergenic 129037 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 125.667-79 chr3 105829749 105830350 + 0.333333 NA intron (NR_135809, intron 3 of 18) intron (NR_135809, intron 3 of 18) 37542 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 139.5-74 chr8 89124218 89124867 + 0.333333 NA Intergenic Intergenic 633169 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 126.833-9 chr1 206939687 206940309 + 0.333333 NA intron (NM_002644, intron 2 of 10) AluSz|SINE|Alu 6468 NM_002644 5284 Hs.497589 NM_002644 ENSG00000162896 PIGR - polymeric immunoglobulin receptor protein-coding 123.333-46 chr17 49646176 49646787 + 0.333333 NA promoter-TSS (NM_001370731) promoter-TSS (NM_001370731) 37 NM_001370730 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 115.333-72 chr3 157435925 157436460 + 0.333333 NA promoter-TSS (NM_002852) promoter-TSS (NM_002852) -658 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 143.667-109 chr9 26848517 26849247 + 0.333333 NA intron (NM_001167575, intron 5 of 5) intron (NM_001167575, intron 5 of 5) 43920 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 138.167-51 chr3 45639089 45639568 + 0.333333 NA intron (NM_014240, intron 2 of 7) intron (NM_014240, intron 2 of 7) 44577 NM_014240 8994 Hs.193370 NM_014240 ENSG00000144791 LIMD1 - LIM domains containing 1 protein-coding 122.333-86 chr4 113803235 113803759 + 0.333333 NA Intergenic MIRc|SINE|MIR -41570 NM_172127 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 127.833-28 chr15 100508404 100508904 + 0.333333 NA intron (NM_001290341, intron 3 of 13) intron (NM_001290341, intron 3 of 13) 35632 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 168.833-30 chr20 59558726 59559464 + 0.333333 NA Intergenic Intergenic -18414 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 149.667-13 chr10 60975818 60976379 + 0.333333 NA intron (NM_001350906, intron 2 of 12) intron (NM_001350906, intron 2 of 12) 24899 NM_001350908 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 115.834-5 chr5 26445758 26446430 + 0.333333 NA Intergenic Intergenic 592492 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 130.5-42 chr2 53339759 53340294 + 0.333333 NA Intergenic Intergenic -427757 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 178.334-3 chr2 25360789 25361832 + 0.333333 NA Intergenic AluSx|SINE|Alu -18720 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 139-27 chr2 66824793 66825588 + 0.333333 NA Intergenic Intergenic -79246 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 116.667-75 chr3 89530604 89531065 + 0.333333 NA Intergenic Intergenic 423213 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 119.667-39 chr19 50243739 50244160 + 0.333333 NA intron (NM_024729, intron 9 of 40) intron (NM_024729, intron 9 of 40) 40321 NM_024729 79784 Hs.467142 NM_024729 ENSG00000105357 MYH14 DFNA4|DFNA4A|FP17425|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin myosin heavy chain 14 protein-coding 134.167-48 chr2 121467191 121467738 + 0.333333 NA intron (NM_015282, intron 9 of 38) L1PA11|LINE|L1 -63416 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 157.833-37 chr2 73183444 73184158 + 0.333333 NA Intergenic FLAM_A|SINE|Alu -18773 NM_001134462 344022 Hs.694384 NM_001134462 ENSG00000214513 NOTO - notochord homeobox protein-coding 133.333-82 chr3 128971728 128972209 + 0.333333 NA intron (NM_001348522, intron 8 of 8) intron (NM_001348522, intron 8 of 8) 19929 NM_001348523 57501 Hs.518247 NM_020741 ENSG00000114656 KIAA1257 - KIAA1257 protein-coding 158-2 chr1 62347648 62348196 + 0.333333 NA Intergenic Intergenic -28488 NM_181712 163782 Hs.283398 NM_181712 ENSG00000132854 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 141.667-6 chr1 172974320 172974874 + 0.333333 NA Intergenic MIR3|SINE|MIR 76366 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 131.667-120 chr7 50152988 50153663 + 0.333333 NA intron (NM_001161834, intron 8 of 8) intron (NM_001161834, intron 8 of 8) 57239 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 132.5-22 chr13 84933608 84934252 + 0.333333 NA Intergenic Intergenic 150276 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 162.667-44 chr2 153660266 153661021 + 0.333333 NA Intergenic MLT1I|LTR|ERVL-MaLR -181881 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 115.167-87 chr5 137820235 137820865 + 0.333333 NA Intergenic MIR|SINE|MIR 19357 NR_002713 4888 Hs.643466 NR_002713 ENSG00000226306 NPY6R NPY1RL|NPY6RP|PP2|Y2B neuropeptide Y receptor Y6 (pseudogene) pseudo 145.5-58 chr5 8606646 8607415 + 0.333333 NA Intergenic Intergenic 146105 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 142-88 chr7 89265705 89266218 + 0.333333 NA intron (NM_181646, intron 2 of 3) intron (NM_181646, intron 2 of 3) -470224 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 120.167-82 chr8 125540130 125540521 + 0.333333 NA Intergenic AluJb|SINE|Alu 108116 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 190.667-7 chr10 108810310 108811173 + 0.333333 NA Intergenic Intergenic -741448 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 177.667-27 chr14 75665278 75665946 + 0.333333 NA intron (NM_015072, intron 2 of 31) AluSx1|SINE|Alu 4366 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 142.667-49 chr2 117024935 117025447 + 0.333333 NA Intergenic Intergenic -789500 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 138.667-73 chr4 150087157 150087781 + 0.333333 NA intron (NM_001040260, intron 1 of 15) MER39B|LTR|ERV1 9024 NM_001040261 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 128.5-70 chr6 168229914 168230358 + 0.333333 NA Intergenic Charlie1a|DNA|hAT-Charlie -3619 NR_134590 105378137 Hs.549668 NR_134590 ENSG00000237987 LOC105378137 - uncharacterized LOC105378137 ncRNA 137.333-57 chr20 51328417 51328988 + 0.333333 NA Intergenic Intergenic 124275 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 127.167-37 chr15 100495792 100496484 + 0.333333 NA intron (NM_001290341, intron 5 of 13) L1MB8|LINE|L1 48148 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 144.167-33 chr19 8997362 8998117 + 0.333333 NA Intergenic Intergenic -16397 NM_024690 94025 Hs.432676 NM_024690 ENSG00000181143 MUC16 CA125 mucin 16, cell surface associated protein-coding 117.833-32 chr16 17575130 17575699 + 0.333333 NA Intergenic Intergenic -104454 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 143.167-70 chr5 156773087 156773516 + 0.333333 NA Intergenic MIRb|SINE|MIR -76994 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 117.667-12 chr10 28253468 28254142 + 0.333333 NA intron (NR_134518, intron 1 of 16) AluSx1|SINE|Alu 28318 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 156.834-3 chr18 1398051 1398883 + 0.333333 NA Intergenic L1ME3G|LINE|L1 -38838 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 117.5-77 chr9 91466153 91466687 + 0.333333 NA Intergenic ERVL-B4-int|LTR|ERVL -41794 NM_001289999 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 119.167-7 chr1 227610473 227610980 + 0.333333 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 47170 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 113.833-69 chr5 25092703 25093289 + 0.333333 NA Intergenic A-rich|Low_complexity|Low_complexity 97660 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 126.667-108 chr8 137897500 137898217 + 0.333333 NA intron (NR_161374, intron 2 of 7) AluSq2|SINE|Alu 185687 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 152.667-3 chr1 55158440 55159290 + 0.333333 NA intron (NM_015306, intron 10 of 67) intron (NM_015306, intron 10 of 67) 56499 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 133.667-20 chr11 131902690 131903150 + 0.333333 NA intron (NM_001352006, intron 2 of 9) (TATGTA)n|Simple_repeat|Simple_repeat -7004 NR_147849 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 132.167-40 chr20 12101919 12102454 + 0.333333 NA Intergenic Intergenic 184293 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 121.5-42 chr15 87694342 87694910 + 0.333333 NA Intergenic Intergenic 117697 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 124-6 chr1 112117900 112118558 + 0.333333 NA Intergenic Intergenic 127693 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 139.667-101 chrX 113224936 113225489 + 0.333333 NA intron (NR_110399, intron 3 of 3) intron (NR_110399, intron 3 of 3) 182485 NR_110399 101928437 Hs.640112 NR_110399 LOC101928437 - uncharacterized LOC101928437 ncRNA 128.5-40 chr2 136503700 136504329 + 0.333333 NA Intergenic MER6A|DNA|TcMar-Tigger -261531 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 136-4 chr1 119142916 119143523 + 0.333333 NA intron (NR_125975, intron 2 of 6) AluSz|SINE|Alu -2547 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 123.167-21 chr12 22780747 22781256 + 0.333333 NA Intergenic AluSz|SINE|Alu 155830 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 124.333-36 chr16 86425119 86425639 + 0.333333 NA Intergenic Intergenic -79700 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 128-34 chr16 17156835 17157469 + 0.333333 NA intron (NM_022166, intron 6 of 11) AluSx|SINE|Alu 22648 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 135.667-9 chr1 222888934 222889537 + 0.333333 NA intron (NM_032890, intron 1 of 9) intron (NM_032890, intron 1 of 9) -39189 NM_001369594 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 130-82 chr5 39617987 39618618 + 0.333333 NA Intergenic AluY|SINE|Alu 97871 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 114-81 chr5 133096257 133096662 + 0.333333 NA intron (NM_002154, intron 14 of 18) intron (NM_002154, intron 14 of 18) 44446 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 148.667-88 chrX 42533341 42534179 + 0.333333 NA Intergenic Intergenic 244403 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 123.333-112 chr8 121220540 121221036 + 0.333333 NA Intergenic Intergenic -408742 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 146.334-6 chr7 780147 780933 + 0.333333 NA intron (NR_075098, intron 12 of 12) Charlie1a|DNA|hAT-Charlie -35017 NM_001171946 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 129-25 chr12 13089371 13089778 + 0.333333 NA intron (NM_001367361, intron 2 of 6) intron (NM_001367361, intron 2 of 6) 6101 NM_001206843 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 118.833-70 chr8 108426584 108427111 + 0.333333 NA Intergenic Intergenic -16736 NM_001329493 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 116.5-82 chr7 25590765 25591177 + 0.333333 NA Intergenic AluSz|SINE|Alu 72169 NR_157823 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 113.5-12 chr10 34165207 34165700 + 0.333333 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -392773 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 116.333-38 chr13 114173877 114174424 + 0.333333 NA Intergenic MER65D|LTR|ERV1 -41527 NM_001320821 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 114.833-29 chr18 72521928 72522361 + 0.333333 NA Intergenic MER31B|LTR|ERV1 22198 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 179.5-25 chr5 82405387 82406223 + 0.333333 NA Intergenic Intergenic 126343 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 164.667-24 chr14 26955337 26955904 + 0.333333 NA Intergenic Intergenic 46978 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 125.333-128 chr9 35392479 35392888 + 0.333333 NA intron (NM_006377, intron 25 of 38) L1PA3|LINE|L1 -14072 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 114.167-52 chr2 191021817 191022362 + 0.333333 NA intron (NR_136318, intron 1 of 2) MER105|DNA|hAT-Charlie 563 NR_136318 105373805 Hs.570280 NR_136318 ENSG00000231858 LOC105373805 - uncharacterized LOC105373805 ncRNA 122.667-37 chr17 78228316 78228828 + 0.333333 NA Intergenic L4_C_Mam|LINE|RTE-X -2721 NM_001204212 283999 Hs.632228 NM_001145529 ENSG00000204278 TMEM235 ARGM1 transmembrane protein 235 protein-coding 125-35 chr18 8297350 8297931 + 0.333333 NA intron (NM_002845, intron 18 of 30) MER3|DNA|hAT-Charlie 69394 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 183.5-2 chr1 59199365 59200086 + 0.333333 NA Intergenic L2c|LINE|L2 -52918 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 123.667-23 chr12 8672986 8673521 + 0.333333 NA Intergenic Intergenic -8347 NR_147945 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 140.667-69 chr5 124887193 124887775 + 0.333333 NA Intergenic Intergenic -142372 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 125.167-76 chr8 102934722 102935128 + 0.333333 NA intron (NR_126339, intron 2 of 2) THE1D|LTR|ERVL-MaLR 70654 NR_126339 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 123.5-7 chr1 160157678 160158343 + 0.333333 NA intron (NM_144699, intron 4 of 21) intron (NM_144699, intron 4 of 21) 6448 NM_144699 480 Hs.662219 NM_144699 ENSG00000132681 ATP1A4 ATP1A1|ATP1AL2 ATPase Na+/K+ transporting subunit alpha 4 protein-coding 123.667-103 chr7 103891619 103892176 + 0.333333 NA intron (NM_005045, intron 2 of 64) intron (NM_005045, intron 2 of 64) 97619 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 117.5-6 chr10 69764599 69765051 + 0.333333 NA Intergenic LTR16C|LTR|ERVL -37081 NM_080805 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 155.167-6 chr1 221407076 221407953 + 0.333333 NA Intergenic Intergenic -71218 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 140.833-41 chr3 58004026 58004621 + 0.333333 NA Intergenic AluSx1|SINE|Alu -4099 NM_001164318 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 115.5-46 chr16 75340796 75341366 + 0.333333 NA intron (NM_006324, intron 5 of 6) intron (NM_006324, intron 5 of 6) -73074 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1 scaffold protein, Cas family member protein-coding 141.5-69 chr5 11349078 11349735 + 0.333333 NA intron (NM_001288715, intron 7 of 20) MIR|SINE|MIR 239511 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 142.333-45 chr18 6853736 6854197 + 0.333333 NA intron (NM_001010000, intron 3 of 16) MER4B|LTR|ERV1 19481 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 114.5-75 chr5 103679531 103680078 + 0.333333 NA Intergenic Intergenic -117015 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 117.333-117 chrX 14338126 14338745 + 0.333333 NA Intergenic Intergenic 94170 NR_110506 286480 Hs.567831 NR_110506 UBE2E4P UbcM2 ubiquitin conjugating enzyme E2 E4 pseudogene pseudo 126.167-73 chr5 73344899 73345343 + 0.333333 NA Intergenic L1MB7|LINE|L1 7215 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 151.5-79 chrX 38131746 38132232 + 0.333333 NA Intergenic AluY|SINE|Alu 88882 NM_006307 8406 Hs.15154 NM_006307 ENSG00000101955 SRPX DRS|ETX1|HEL-S-83p|SRPX1 sushi repeat containing protein X-linked protein-coding 155 chr1 40553051 40553724 + 0.333333 NA Intergenic Intergenic 21750 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 140.167-69 chr8 63492320 63492868 + 0.333333 NA Intergenic Intergenic 26745 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 150-20 chr14 58410367 58411003 + 0.333333 NA intron (NR_130753, intron 2 of 2) intron (NR_130753, intron 2 of 2) 14755 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 130.333-98 chr9 97619152 97619775 + 0.333333 NA intron (NM_139246, intron 3 of 9) Tigger2a|DNA|TcMar-Tigger 13905 NM_139246 158427 Hs.723236 NM_139246 ENSG00000136925 TSTD2 C9orf97 thiosulfate sulfurtransferase like domain containing 2 protein-coding 114.5-82 chr6 156384548 156385011 + 0.333333 NA Intergenic MSTB|LTR|ERVL-MaLR 6029 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 152.333-5 chr10 10904366 10904886 + 0.333333 NA intron (NM_001326328, intron 2 of 15) L1ME3G|LINE|L1 47537 NR_015413 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 147.5-20 chr12 18230587 18231138 + 0.333333 NA Intergenic L1MA4A|LINE|L1 -30678 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 131.833-4 chr1 223113140 223113779 + 0.333333 NA intron (NM_003268, intron 5 of 5) AluJb|SINE|Alu 29789 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 113.167-46 chr3 24175236 24175684 + 0.333333 NA intron (NR_121667, intron 2 of 3) intron (NR_121667, intron 2 of 3) 24136 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 119.834-2 chr13 77451908 77452619 + 0.333333 NA Intergenic Intergenic -83411 NM_001160706 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 115.5-66 chr3 101613857 101614284 + 0.333333 NA Intergenic AluSx1|SINE|Alu 39890 NM_020357 57092 Hs.732633 NM_020357 ENSG00000081154 PCNP - PEST proteolytic signal containing nuclear protein protein-coding 120-33 chr14 46507247 46507683 + 0.333333 NA Intergenic AluSz|SINE|Alu 36106 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 146-2 chr1 105814431 105815084 + 0.333333 NA Intergenic Intergenic -195822 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 153-14 chr12 48101270 48101940 + 0.333333 NA intron (NM_001267594, intron 1 of 17) intron (NM_001267594, intron 1 of 17) -3648 NM_001354742 5213 Hs.75160 NM_000289 ENSG00000152556 PFKM ATP-PFK|GSD7|PFK-1|PFK-A|PFK1|PFKA|PFKX|PPP1R122 phosphofructokinase, muscle protein-coding 117.667-104 chr5 98504175 98504717 + 0.333333 NA Intergenic Intergenic -264186 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 128.333-17 chr10 83323994 83324603 + 0.333333 NA Intergenic L1MA2|LINE|L1 352791 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 116.5-66 chr4 160494735 160495323 + 0.333333 NA Intergenic Intergenic -717245 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 113.667-58 chr2 8606221 8606888 + 0.333333 NA Intergenic Intergenic -22762 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 188.834-6 chr9 20530501 20531439 + 0.333333 NA intron (NM_001286691, intron 2 of 10) (TACATAT)n|Simple_repeat|Simple_repeat -28628 NR_039685 100616441 NR_039685 ENSG00000264941 MIR4474 - microRNA 4474 ncRNA 151.833-18 chr16 17572325 17573036 + 0.333333 NA Intergenic Intergenic -101720 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 116.5-35 chr2 45395756 45396289 + 0.333333 NA intron (NM_018079, intron 19 of 20) intron (NM_018079, intron 19 of 20) -141081 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 124.167-32 chr16 12997029 12997577 + 0.333333 NA intron (NM_001145204, intron 2 of 4) L1ME2|LINE|L1 95705 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 119.5-6 chr1 102665629 102666120 + 0.333333 NA Intergenic Intergenic 442622 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 117-45 chr18 13776263 13776945 + 0.333333 NA Intergenic AluSq2|SINE|Alu -47545 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 119-77 chr4 122264500 122265036 + 0.333333 NA intron (NM_015312, intron 43 of 83) intron (NM_015312, intron 43 of 83) 94165 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 147.167-10 chr10 44809138 44809836 + 0.333333 NA Intergenic MSTB-int|LTR|ERVL-MaLR -101829 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 140.5-23 chr14 38776143 38776729 + 0.333333 NA intron (NR_039982, intron 4 of 4) intron (NR_039982, intron 4 of 4) -106160 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 118.834-8 chr3 87953333 87953991 + 0.333333 NA intron (NM_001322210, intron 2 of 2) L1MA4A|LINE|L1 -28914 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 186.834-3 chr14 47711055 47712011 + 0.333333 NA Intergenic AluSx1|SINE|Alu -36579 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 124.834-4 chr20 61221055 61221728 + 0.333333 NA Intergenic Intergenic -30870 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 120.667-92 chr5 15759279 15759940 + 0.333333 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -144607 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 128.833-58 chr3 149393463 149393975 + 0.333333 NA Intergenic L1ME4b|LINE|L1 15941 NR_109810 100874091 Hs.549633 NR_046650 ENSG00000240541 TM4SF1-AS1 - TM4SF1 antisense RNA 1 ncRNA 125.334-3 chr8 77697015 77697703 + 0.333333 NA Intergenic L1PA8A|LINE|L1 246662 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 127-25 chr13 94903902 94904416 + 0.333333 NA intron (NR_110754, intron 2 of 4) Tigger3d|DNA|TcMar-Tigger -55882 NR_047487 100861544 Hs.48706 NR_047487 ENSG00000260962 LINC00557 - long intergenic non-protein coding RNA 557 ncRNA 130.5-26 chr15 73658204 73658947 + 0.333333 NA Intergenic Intergenic -25186 NM_017455 27020 Hs.744867 NM_012428 ENSG00000156642 NPTN GP55|GP65|SDFR1|SDR1|np55|np65 neuroplastin protein-coding 132.834-3 chr11 6754191 6754891 + 0.333333 NA Intergenic MER66B|LTR|ERV1 14416 NM_001004490 338755 Hs.534614 NM_001004490 ENSG00000188124 OR2AG2 OR11-76|OR2AG2P olfactory receptor family 2 subfamily AG member 2 protein-coding 123.167-88 chr6 163114369 163114804 + 0.333333 NA intron (NM_001080379, intron 4 of 4) L1MA9|LINE|L1 -60425 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 132.667-13 chr10 74702364 74702959 + 0.333333 NA intron (NM_001369124, intron 9 of 9) AluSq|SINE|Alu -122594 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 142-28 chr12 96448445 96449141 + 0.333333 NA Intergenic AluSx1|SINE|Alu -40784 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 122.667-86 chr5 95775208 95775740 + 0.333333 NA intron (NM_014899, intron 8 of 11) intron (NM_014899, intron 8 of 11) -43372 NM_001349303 83890 Hs.50499 NM_031952 ENSG00000145757 SPATA9 NYD-SP16 spermatogenesis associated 9 protein-coding 142.5-61 chr5 115475674 115476311 + 0.333333 NA Intergenic Intergenic 68783 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 116-79 chr5 101286065 101286573 + 0.333333 NA Intergenic Intergenic -383037 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 149.5-69 chr8 129321133 129321666 + 0.333333 NA Intergenic Intergenic -80159 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 124.5-53 chr4 121100622 121101166 + 0.333333 NA Intergenic MSTC|LTR|ERVL-MaLR -28359 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 154.667-52 chr5 2852984 2853609 + 0.333333 NA Intergenic Intergenic -64558 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 143.667-63 chr2 237209335 237209887 + 0.333333 NA Intergenic L1PA10|LINE|L1 123722 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 156.333-71 chr4 82868855 82869405 + 0.333333 NA intron (NM_016211, intron 8 of 24) AluYm1|SINE|Alu 22023 NM_001077207 22872 Hs.370024 NM_014933 ENSG00000138674 SEC31A ABP125|ABP130|HSPC275|HSPC334|SEC31L1 SEC31 homolog A, COPII coat complex component protein-coding 123-40 chr2 27763363 27763859 + 0.333333 NA Intergenic Intergenic -8106 NM_145330 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 134.667-42 chr18 4998521 4998946 + 0.333333 NA Intergenic Intergenic -82449 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 130.5-14 chr11 83098850 83099382 + 0.333333 NA Intergenic AluSx1|SINE|Alu 27050 NR_038903 100506233 Hs.503429 NR_038903 ENSG00000246067 RAB30-DT RAB30-AS1 RAB30 divergent transcript ncRNA 118.667-42 chr17 72569159 72569827 + 0.333333 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 23311 NR_137280 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 122-16 chr12 18523159 18523796 + 0.333333 NA intron (NM_001288774, intron 24 of 32) L1M3b|LINE|L1 214032 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 120.667-33 chr12 131534166 131534692 + 0.333333 NA Intergenic Intergenic 113692 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 121.333-110 chr8 121064971 121065386 + 0.333333 NA Intergenic Intergenic -253132 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 118.167-17 chr13 103844425 103844946 + 0.333333 NA Intergenic Intergenic 419485 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 122.167-66 chr7 39027648 39028226 + 0.333333 NA intron (NM_007252, intron 2 of 10) L1M5|LINE|L1 -14370 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 149.167-59 chr7 66166114 66166997 + 0.333333 NA Intergenic L1ME3B|LINE|L1 -38779 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 125.833-8 chr10 32900098 32900766 + 0.333333 NA TTS (NR_132768) TTS (NR_132768) 1040 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 124.167-7 chr1 236884629 236885191 + 0.333333 NA intron (NM_000254, intron 25 of 32) MER77|LTR|ERVL 89618 NM_001291940 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 113.334-8 chr5 37183090 37183720 + 0.333333 NA exon (NM_023073, exon 26 of 52) exon (NM_023073, exon 26 of 52) -65641 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 119.167-72 chr4 108259895 108260345 + 0.333333 NA Intergenic Intergenic 88000 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 189.167-45 chr9 27735283 27736110 + 0.333333 NA Intergenic Intergenic -161830 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 117.167-44 chr2 117124853 117125524 + 0.333333 NA Intergenic Intergenic -689503 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 116.667-53 chr2 64223014 64223558 + 0.333333 NA Intergenic Intergenic -5115 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 139.333-17 chr10 112381749 112382275 + 0.333333 NA intron (NM_016234, intron 1 of 20) intron (NM_016234, intron 1 of 20) 5814 NM_016234 51703 Hs.11638 NM_016234 ENSG00000197142 ACSL5 ACS2|ACS5|FACL5 acyl-CoA synthetase long chain family member 5 protein-coding 169.833-28 chr5 150866370 150867056 + 0.333333 NA intron (NM_001346557, intron 2 of 3) intron (NM_001346557, intron 2 of 3) 20190 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 119-25 chr12 45767633 45768158 + 0.333333 NA intron (NM_152641, intron 3 of 20) intron (NM_152641, intron 3 of 20) 38186 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 177.333-56 chr6 46641629 46642468 + 0.333333 NA intron (NM_016593, intron 2 of 11) intron (NM_016593, intron 2 of 11) 10770 NM_016593 51302 Hs.387367 NM_016593 ENSG00000146233 CYP39A1 - cytochrome P450 family 39 subfamily A member 1 protein-coding 137.167-19 chr14 51497948 51498473 + 0.333333 NA intron (NM_001042481, intron 1 of 14) MLT1H-int|LTR|ERVL-MaLR 9082 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 146-13 chr12 10634944 10635595 + 0.333333 NA intron (NM_018423, intron 2 of 10) AluJo|SINE|Alu -21660 NR_135121 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 153.334-6 chr4 102549393 102550299 + 0.333333 NA intron (NM_003998, intron 5 of 23) L2|LINE|L2 -47360 NR_136202 105377621 Hs.15833 NR_136202 LOC105377621 - uncharacterized LOC105377621 ncRNA 131.667-85 chr3 157932380 157933083 + 0.333333 NA Intergenic Intergenic 173432 NM_006884 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 124.167-55 chr21 16061578 16062157 + 0.333333 NA Intergenic AluYj4|SINE|Alu -8621 NR_136541 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 149.167-49 chr5 115758732 115759478 + 0.333333 NA Intergenic LTR47A2|LTR|ERVL 57552 NR_136621 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 134.167-54 chr3 3498975 3499549 + 0.333333 NA Intergenic Intergenic -300169 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 142.334-6 chr8 120852324 120853113 + 0.333333 NA Intergenic Intergenic -40672 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 170-29 chr17 59634502 59635067 + 0.333333 NA intron (NM_001288653, intron 1 of 31) intron (NM_001288653, intron 1 of 31) 14889 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 136.333-59 chr3 33960646 33961151 + 0.333333 NA Intergenic Intergenic 162268 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 121.833-50 chr4 74151790 74152361 + 0.333333 NA intron (NM_001351311, intron 2 of 7) L1MD|LINE|L1 -6033 NM_001144978 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 140.334-4 chr16 47690217 47690969 + 0.333333 NA intron (NM_001031835, intron 28 of 31) L1MC4a|LINE|L1 -167988 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 133.167-14 chr11 95074635 95075353 + 0.333333 NA Intergenic Intergenic 8117 NR_103726 10929 Hs.476680 NM_032102 ENSG00000263465 SRSF8 DSM-1|SFRS2B|SRP46 serine and arginine rich splicing factor 8 protein-coding 138.5-53 chr4 27307948 27308458 + 0.333333 NA Intergenic Intergenic 90724 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 135.167-55 chr2 209759863 209760587 + 0.333333 NA Intergenic L1PA14|LINE|L1 -11607 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 146.5-74 chr6 65579486 65580114 + 0.333333 NA promoter-TSS (NM_198283) promoter-TSS (NM_198283) 4 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 135.667-102 chr7 38316717 38317329 + 0.333333 NA Intergenic Intergenic -24554 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 125.667-112 chr7 41799834 41800362 + 0.333333 NA Intergenic Intergenic -97008 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 114-27 chr11 74359128 74359502 + 0.333333 NA intron (NM_173582, intron 5 of 13) AluJb|SINE|Alu 39118 NM_173582 283209 Hs.26612 NM_173582 ENSG00000165434 PGM2L1 BM32A|PMMLP phosphoglucomutase 2 like 1 protein-coding 117-40 chr17 55349954 55350436 + 0.333333 NA Intergenic AluSz6|SINE|Alu 71640 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 133.667-108 chrX 110883481 110884006 + 0.333333 NA Intergenic L1PA15|LINE|L1 -60498 NM_001128167 5063 Hs.593599 NM_002578 ENSG00000077264 PAK3 ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|bPAK|beta-PAK p21 (RAC1) activated kinase 3 protein-coding 142-38 chr18 57055212 57055923 + 0.333333 NA non-coding (NR_152602, exon 5 of 5) non-coding (NR_152602, exon 5 of 5) 16552 NR_152602 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 128.5-71 chr7 10655734 10656467 + 0.333333 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -46576 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 148.667-8 chr10 30483330 30484083 + 0.333333 NA Intergenic MER1A|DNA|hAT-Charlie 49060 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 118.667-13 chr10 27201818 27202502 + 0.333333 NA intron (NM_001271512, intron 11 of 11) intron (NM_001271512, intron 11 of 11) 38326 NM_001301252 91452 Hs.530597 NM_145698 ENSG00000107897 ACBD5 - acyl-CoA binding domain containing 5 protein-coding 135-32 chr19 36396275 36396912 + 0.333333 NA intron (NM_001321917, intron 4 of 4) AluYk2|SINE|Alu -17392 NM_001297619 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 115.833-68 chr6 106838130 106838594 + 0.333333 NA Intergenic AluSz|SINE|Alu -50821 NR_147986 100422737 Hs.634681 NR_015365 ENSG00000235142 LINC02532 - long intergenic non-protein coding RNA 2532 ncRNA 154.333-44 chr20 59151571 59152214 + 0.333333 NA Intergenic Intergenic -39128 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 130.833-55 chr5 4073369 4073883 + 0.333333 NA Intergenic L1M3b|LINE|L1 477794 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 118.667-31 chr14 42645632 42646317 + 0.333333 NA Intergenic L1P2|LINE|L1 1039118 NM_001346175 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 145.833-49 chr3 94935574 94936145 + 0.333333 NA Intergenic Intergenic -2404 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 122-38 chr2 120609735 120610164 + 0.333333 NA Intergenic Intergenic -125919 NM_001371271 132.167-49 chr3 157968093 157968577 + 0.333333 NA Intergenic L2c|LINE|L2 137828 NM_006884 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 125.667-40 chr15 71758535 71759070 + 0.333333 NA intron (NM_001286429, intron 9 of 11) intron (NM_001286429, intron 9 of 11) -51752 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 128-41 chr19 52583354 52583936 + 0.333333 NA 3' UTR (NM_001172655, exon 5 of 5) 3' UTR (NM_001172655, exon 5 of 5) 12981 NM_001172655 55762 Hs.235167 NM_018260 ENSG00000167562 ZNF701 - zinc finger protein 701 protein-coding 154.667-67 chr7 47636370 47637170 + 0.333333 NA Intergenic Intergenic 14831 NR_108090 101929086 Hs.563487 NR_108090 ENSG00000236078 LINC01447 - long intergenic non-protein coding RNA 1447 ncRNA 139.834-5 chr5 159055837 159056635 + 0.333333 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 41720 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 140.833-24 chr17 50860918 50861489 + 0.333333 NA Intergenic Intergenic 5151 NM_005749 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 157.834-3 chr13 39385278 39386194 + 0.333333 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 217457 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 144.167-51 chr4 31041935 31042776 + 0.333333 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -128789 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 117.167-85 chr6 150618059 150618693 + 0.333333 NA intron (NM_001329799, intron 1 of 15) MER63C|DNA|hAT-Blackjack -14588 NR_138140 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 123.833-3 chr1 150466892 150467509 + 0.333333 NA intron (NM_015203, intron 10 of 10) intron (NM_015203, intron 10 of 10) -20219 NM_001271896 80222 Hs.288974 NM_025150 ENSG00000143374 TARS2 COXPD21|TARSL1|thrRS threonyl-tRNA synthetase 2, mitochondrial protein-coding 116.833-26 chr2 53265302 53265692 + 0.333333 NA Intergenic L1M5|LINE|L1 -502286 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 154.667-32 chr18 73414968 73415741 + 0.333333 NA Intergenic MER3|DNA|hAT-Charlie 90413 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 152.667-25 chr13 45072300 45073192 + 0.333333 NA Intergenic Intergenic -33533 NR_120424 101929259 Hs.638490 NR_120424 LOC101929259 - uncharacterized LOC101929259 ncRNA 123.5-24 chr14 39400776 39401319 + 0.333333 NA intron (NM_203301, intron 3 of 3) intron (NM_203301, intron 3 of 3) 31453 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 124.833-40 chr2 72805427 72806089 + 0.333333 NA intron (NR_135774, intron 1 of 19) L1MA7|LINE|L1 20275 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 134.167-58 chr4 22765564 22766147 + 0.333333 NA intron (NR_102357, intron 4 of 4) L1ME3C|LINE|L1 51766 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 184.333-68 chr8 120482999 120483642 + 0.333333 NA intron (NM_022045, intron 11 of 21) intron (NM_022045, intron 11 of 21) 37901 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 136.167-58 chr4 51961143 51961718 + 0.333333 NA Intergenic AluY|SINE|Alu 58933 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 120-103 chr7 139160275 139160745 + 0.333333 NA intron (NM_001144920, intron 7 of 16) AluSc|SINE|Alu 26732 NM_001318333 79989 Hs.133020 NM_024926 ENSG00000105948 TTC26 DYF13|IFT56|dyf-13 tetratricopeptide repeat domain 26 protein-coding 141.5-29 chr14 27296923 27297496 + 0.333333 NA Intergenic MSTA-int|LTR|ERVL-MaLR -315379 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 116-53 chr2 195240501 195240951 + 0.333333 NA Intergenic Intergenic -416232 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 174.833-45 chr6 119858065 119858699 + 0.333333 NA Intergenic AluJr|SINE|Alu -156797 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 150-4 chr10 43541225 43541935 + 0.333333 NA Intergenic AluSz|SINE|Alu 26879 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 146.167-6 chr1 177965268 177965928 + 0.333333 NA intron (NR_151492, intron 12 of 22) intron (NR_151492, intron 12 of 22) 4324 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 151.667-47 chr2 173334335 173335165 + 0.333333 NA Intergenic L1MD1|LINE|L1 -20122 NM_031942 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 126.333-26 chr13 110038941 110039475 + 0.333333 NA Intergenic L1M3|LINE|L1 -14077 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 114.5-16 chr11 78541328 78541987 + 0.333333 NA intron (NR_120566, intron 1 of 3) AluJo|SINE|Alu 8481 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 117-105 chr6 136258469 136259148 + 0.333333 NA 3' UTR (NM_001301038, exon 13 of 13) 3' UTR (NM_001301038, exon 13 of 13) -8497 NM_001318738 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 124-73 chr5 27339672 27340375 + 0.333333 NA Intergenic L1M2|LINE|L1 -132269 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 163.667-69 chr8 58945301 58945915 + 0.333333 NA intron (NM_014729, intron 2 of 8) intron (NM_014729, intron 2 of 8) 173539 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 120-19 chr11 114656838 114657290 + 0.333333 NA Intergenic AluY|SINE|Alu -21463 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 141.667-12 chr10 115551944 115552505 + 0.333333 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 458859 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 150.334-5 chr4 47743762 47744636 + 0.333333 NA intron (NM_006587, intron 5 of 21) L1ME3A|LINE|L1 -87146 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 124.833-44 chr2 113915890 113916360 + 0.333333 NA intron (NR_102318, intron 2 of 10) intron (NR_102318, intron 2 of 10) -25133 NR_110174 101060091 Hs.741753 NR_110174 ACTR3-AS1 - ACTR3 antisense RNA 1 ncRNA 114.167-25 chr12 92911867 92912536 + 0.333333 NA intron (NM_003566, intron 1 of 28) intron (NM_003566, intron 1 of 28) 17094 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 114.833-9 chr10 73389007 73389561 + 0.333333 NA intron (NM_001156, intron 5 of 12) L1MC4a|LINE|L1 24774 NM_004034 310 Hs.631827 NM_001156 ENSG00000138279 ANXA7 ANX7|SNX|SYNEXIN annexin A7 protein-coding 128.333-82 chr3 119369711 119370358 + 0.333333 NA intron (NM_020754, intron 3 of 11) intron (NM_020754, intron 3 of 11) -47274 NR_046748 100874246 Hs.607097 NR_046748 ENSG00000241155 ARHGAP31-AS1 - ARHGAP31 antisense RNA 1 ncRNA 152.667-91 chr9 127258841 127259453 + 0.333333 NA Intergenic Intergenic -4515 NM_001286779 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding 126.333-28 chr14 38667930 38668536 + 0.333333 NA Intergenic Intergenic -214363 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 125.167-14 chr11 24048918 24049388 + 0.333333 NA Intergenic Intergenic -447900 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 127.667-60 chr3 146617366 146617775 + 0.333333 NA Intergenic L2|LINE|L2 -11354 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 131.5-55 chr4 55342968 55343586 + 0.333333 NA Intergenic LTR10E|LTR|ERV1 -2965 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 123.5-47 chr2 100518039 100518526 + 0.333333 NA Intergenic LTR103_Mam|LTR|ERV1? -44711 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 115.333-107 chr8 118950295 118950835 + 0.333333 NA intron (NM_002546, intron 1 of 4) L1ME3A|LINE|L1 1320 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 127-97 chr8 107861032 107861563 + 0.333333 NA Intergenic L1PB1|LINE|L1 220642 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 139-57 chr6 4656591 4657124 + 0.333333 NA Intergenic L1MEc|LINE|L1 46292 NR_122107 497048 Hs.591355 NM_001011540 ENSG00000205444 KU-MEL-3 - uncharacterized LOC497048 ncRNA 117.333-95 chr6 56866541 56867057 + 0.333333 NA intron (NM_001144769, intron 3 of 96) L2a|LINE|L2 -14883 NM_001144770 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 118.167-20 chr14 86896201 86896703 + 0.333333 NA Intergenic AluSx|SINE|Alu -9326 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 152.333-66 chr8 73359316 73359837 + 0.333333 NA Intergenic Intergenic -3115 NR_125388 101926926 Hs.640090 NR_125388 ENSG00000250295 RDH10-AS1 - RDH10 antisense RNA 1 ncRNA 152.5-73 chr9 101811795 101812252 + 0.333333 NA Intergenic Intergenic -73443 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 136.333-99 chr8 127400608 127401052 + 0.333333 NA non-coding (NR_109834, exon 1 of 1) non-coding (NR_109834, exon 1 of 1) 431 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 115.167-94 chr6 82315208 82315859 + 0.333333 NA Intergenic L1PB1|LINE|L1 -47673 NM_006670 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 174.667-69 chr8 118300753 118301681 + 0.333333 NA intron (NM_001101676, intron 4 of 4) Helitron1Nb_Mam|RC|Helitron -189398 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 122.334-5 chr20 35499008 35499700 + 0.333333 NA intron (NM_007186, intron 27 of 34) intron (NM_007186, intron 27 of 34) 30298 NR_026933 140873 Hs.158680 NM_080828 ENSG00000125975 C20orf173 dJ477O4.4 chromosome 20 open reading frame 173 protein-coding 118.667-80 chr3 122519707 122520216 + 0.333333 NA Intergenic Intergenic -5022 NR_026698 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 119-57 chr2 207958436 207958842 + 0.333333 NA intron (NM_001080475, intron 3 of 7) AluSx|SINE|Alu 66888 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 118.5-12 chr1 188591690 188592100 + 0.333333 NA Intergenic MER20|DNA|hAT-Charlie 1148267 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 138.833-7 chr1 229052752 229053277 + 0.333333 NA Intergenic MER5A|DNA|hAT-Charlie 121787 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 156.333-8 chr1 226261971 226262547 + 0.333333 NA intron (NM_001366239, intron 9 of 13) L1MC1|LINE|L1 38595 NM_001282402 83881 Hs.282079 NM_031944 ENSG00000185155 MIXL1 MILD1|MIX|MIXL Mix paired-like homeobox protein-coding 114-62 chr21 16618528 16618978 + 0.333333 NA intron (NR_136541, intron 7 of 9) L2a|LINE|L2 28516 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 167-16 chr11 47604693 47605257 + 0.333333 NA Intergenic AluY|SINE|Alu -10564 NM_031909 114900 Hs.662633 NM_031909 ENSG00000172247 C1QTNF4 CTRP4|ZACRP4 C1q and TNF related 4 protein-coding 115.667-37 chr15 79704796 79705291 + 0.333333 NA Intergenic MLT1H|LTR|ERVL-MaLR 191954 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 114-78 chr5 65717351 65717833 + 0.333333 NA intron (NM_019072, intron 2 of 10) L2a|LINE|L2 4517 NM_019072 54557 Hs.482301 NM_019072 ENSG00000197860 SGTB SGT2 small glutamine rich tetratricopeptide repeat containing beta protein-coding 117-126 chr9 33189161 33189614 + 0.333333 NA Intergenic Intergenic 21528 NR_108108 101929639 Hs.545818 NR_108108 ENSG00000233554 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 143.167-28 chr2 32374024 32374710 + 0.333333 NA intron (NM_016252, intron 1 of 73) AluJr|SINE|Alu 17339 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 151.833-47 chr5 79681314 79682037 + 0.333333 NA intron (NM_001349553, intron 15 of 16) intron (NM_001349553, intron 15 of 16) -8161 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 161.667-71 chr7 3411786 3412279 + 0.333333 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 110780 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 128.833-31 chr16 75863283 75863830 + 0.333333 NA Intergenic Intergenic -137066 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 114-80 chr5 88610564 88611015 + 0.333333 NA intron (NR_152235, intron 2 of 3) L2|LINE|L2 56150 NR_030741 407047 NR_030741 ENSG00000284447 MIR9-2 MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2 microRNA 9-2 ncRNA 116.833-54 chr5 118354492 118354952 + 0.333333 NA intron (NR_104610, intron 9 of 9) MIR|SINE|MIR 72148 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 115.5-101 chr8 121090956 121091443 + 0.333333 NA Intergenic Tigger1|DNA|TcMar-Tigger -279153 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 153-59 chr9 94596453 94597212 + 0.333333 NA Intergenic AluJb|SINE|Alu -3008 NM_003837 8789 Hs.61255 NM_003837 ENSG00000130957 FBP2 - fructose-bisphosphatase 2 protein-coding 156-22 chr13 86416247 86417128 + 0.333333 NA Intergenic Intergenic -495233 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 125-86 chr7 101324268 101324780 + 0.333333 NA Intergenic AluSx|SINE|Alu -2701 NM_001287526 64792 Hs.389104 NM_022777 ENSG00000128581 IFT22 RABL5 intraflagellar transport 22 protein-coding 113.333-98 chr7 48089864 48090299 + 0.333333 NA intron (NR_109837, intron 1 of 6) CpG 816 NM_001287429 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 154.167-65 chr9 85225529 85226108 + 0.333333 NA Intergenic Intergenic 516211 NM_001286715 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 152.167-75 chr8 121366365 121367051 + 0.333333 NA Intergenic MamRep434|DNA|TcMar-Tigger -272638 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 136.5-7 chr1 105244411 105244836 + 0.333333 NA Intergenic Intergenic 374312 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 144.333-13 chr10 19500480 19501119 + 0.333333 NA intron (NM_001142308, intron 31 of 39) intron (NM_001142308, intron 31 of 39) 227751 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 117.667-13 chr10 36746261 36746742 + 0.333333 NA Intergenic AluSc|SINE|Alu -379356 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 154-2 chr1 164427418 164427975 + 0.333333 NA Intergenic Intergenic -131664 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 119.833-41 chr2 76923157 76923704 + 0.333333 NA intron (NR_146416, intron 1 of 1) MER63D|DNA|hAT-Blackjack -62535 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 140.334-8 chr8 116711525 116712337 + 0.333333 NA intron (NM_003756, intron 2 of 7) intron (NM_003756, intron 2 of 7) 43892 NM_003756 8667 Hs.492599 NM_003756 ENSG00000147677 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3 subunit H protein-coding 115.334-2 chr14 29596765 29597430 + 0.333333 NA intron (NM_001330069, intron 17 of 18) intron (NM_001330069, intron 17 of 18) 329999 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 114.833-72 chr8 112222822 112223395 + 0.333333 NA 3' UTR (NM_198124, exon 72 of 72) 3' UTR (NM_198124, exon 72 of 72) -420385 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 120.167-16 chr14 51138635 51139353 + 0.333333 NA Intergenic Intergenic -43290 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 135.667-44 chr18 7421005 7421525 + 0.333333 NA Intergenic Intergenic 39741 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 133.333-114 chr7 43930893 43931490 + 0.333333 NA intron (NM_015983, intron 1 of 6) AluJb|SINE|Alu 4755 NM_015983 51619 Hs.19196 NM_015983 ENSG00000078967 UBE2D4 HBUCE1 ubiquitin conjugating enzyme E2 D4 (putative) protein-coding 135.333-90 chr8 123897040 123897514 + 0.333333 NA intron (NM_001039112, intron 1 of 40) L2|LINE|L2 45290 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 133.5-54 chr5 36879578 36880346 + 0.333333 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 3193 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 117.667-97 chr5 14443463 14444013 + 0.333333 NA intron (NM_007118, intron 34 of 56) intron (NM_007118, intron 34 of 56) -20245 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 148.167-35 chr2 54707670 54708501 + 0.333333 NA Intergenic Intergenic -16927 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 134-70 chr3 35503367 35503841 + 0.333333 NA Intergenic Intergenic -109581 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 119.5-70 chr4 72813493 72814170 + 0.333333 NA Intergenic Intergenic -244610 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 130.833-60 chr6 56967770 56968384 + 0.333333 NA intron (NM_001318539, intron 1 of 3) intron (NM_001318539, intron 1 of 3) 12970 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 126.167-79 chr6 105144524 105145073 + 0.333333 NA intron (NR_037157, intron 1 of 3) L1MC2|LINE|L1 7111 NR_037157 154442 Hs.586271 NR_037157 ENSG00000203808 BVES-AS1 C6orf112|bA99L11.2 BVES antisense RNA 1 ncRNA 115.834-4 chr3 61990053 61990685 + 0.333333 NA intron (NM_002841, intron 3 of 29) intron (NM_002841, intron 3 of 29) 328578 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 113.167-5 chr1 239014206 239014621 + 0.333333 NA Intergenic Intergenic -372155 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 114.833-2 chr1 42059014 42059471 + 0.333333 NA Intergenic L1ME3Cz|LINE|L1 -23308 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 113.5-21 chr11 95349093 95349562 + 0.333333 NA Intergenic L1M1|LINE|L1 -116852 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 143.5-5 chr10 84066297 84067008 + 0.333333 NA Intergenic AluSz6|SINE|Alu -72857 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 142.334-5 chr3 87357813 87358605 + 0.333333 NA Intergenic Intergenic -81625 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 129.167-57 chr5 20330163 20330872 + 0.333333 NA intron (NR_146519, intron 1 of 1) MER50|LTR|ERV1 24966 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 130.5-40 chr2 34339499 34340007 + 0.333333 NA Intergenic Intergenic 272527 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 118.667-122 chr9 86000593 86001084 + 0.333333 NA intron (NM_024635, intron 12 of 22) L1PREC2|LINE|L1 59309 NM_001321882 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 116.833-34 chr22 28577631 28578157 + 0.333333 NA intron (NM_001145418, intron 2 of 22) L1MA3|LINE|L1 101971 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 142-33 chr16 54508350 54509028 + 0.333333 NA Intergenic Intergenic -137990 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 120.667-110 chr7 102456455 102456967 + 0.333333 NA 3' UTR (NM_001271818, exon 4 of 4) 3' UTR (NM_001271818, exon 4 of 4) 8152 NM_017621 54784 Hs.658598 NM_017621 ENSG00000160993 ALKBH4 ABH4 alkB homolog 4, lysine demethylase protein-coding 117.333-17 chr11 56169621 56169998 + 0.333333 NA Intergenic L1MEg2|LINE|L1 -6809 NM_001005492 282775 Hs.537145 NM_001005492 ENSG00000174957 OR5J2 OR11-266 olfactory receptor family 5 subfamily J member 2 protein-coding 142.834-5 chr4 69024196 69025051 + 0.333333 NA Intergenic L1PA13|LINE|L1 -4227 NM_001290091 7365 Hs.201634 NM_001075 ENSG00000109181 UGT2B10 UDPGT2B10 UDP glucuronosyltransferase family 2 member B10 protein-coding 160.5-2 chr1 118605674 118606178 + 0.333333 NA Intergenic Intergenic 382417 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 125.667-39 chr15 58038536 58038955 + 0.333333 NA intron (NM_170696, intron 1 of 11) (TGGTAA)n|Simple_repeat|Simple_repeat -24722 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 121.667-45 chr18 60222794 60223288 + 0.333333 NA Intergenic L1MA4A|LINE|L1 149734 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 151.167-30 chr2 170137077 170137620 + 0.333333 NA Intergenic L1MA4|LINE|L1 -40799 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 186.333-11 chr10 126436985 126437740 + 0.333333 NA intron (NR_148989, intron 3 of 6) MER5A|DNA|hAT-Charlie 11432 NR_148989 728158 Hs.646701 NR_148989 LOC728158 - uncharacterized LOC728158 ncRNA 132-90 chr7 122183100 122183569 + 0.333333 NA Intergenic L1MA2|LINE|L1 -39085 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 130.833-44 chr3 129210264 129210853 + 0.333333 NA Intergenic L1MB4|LINE|L1 -26662 NM_001127196 7555 Hs.518249 NM_003418 ENSG00000169714 CNBP CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9 CCHC-type zinc finger nucleic acid binding protein protein-coding 152-20 chr12 42433696 42434207 + 0.333333 NA intron (NM_016488, intron 9 of 12) intron (NM_016488, intron 9 of 12) 49664 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 137.833-10 chr11 131498102 131498650 + 0.333333 NA intron (NM_001352003, intron 1 of 8) MIRb|SINE|MIR 42491 NR_110140 101929653 Hs.559159 NR_110140 ENSG00000237654 LOC101929653 - uncharacterized LOC101929653 ncRNA 114.667-63 chr2 237169387 237169907 + 0.333333 NA Intergenic L1ME5|LINE|L1 83758 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 128.833-82 chr6 161943202 161943719 + 0.333333 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 472483 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 113.333-32 chr12 128294551 128294988 + 0.333333 NA TTS (NR_037406) TTS (NR_037406) 677 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 133.334-7 chr6 56859888 56860593 + 0.333333 NA intron (NM_001144769, intron 3 of 96) intron (NM_001144769, intron 3 of 96) -8324 NM_001144770 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 154.834-5 chr5 92516579 92517401 + 0.333333 NA Intergenic Intergenic 1054353 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 121.5-3 chr1 68320773 68321350 + 0.333333 NA Intergenic MIR|SINE|MIR -88515 NM_001002292 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 115.834-6 chr6 64133568 64134230 + 0.333333 NA intron (NM_001292009, intron 31 of 43) L2c|LINE|L2 327063 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 141.5 chr1 20352877 20353374 + 0.333333 NA intron (NM_001039500, intron 21 of 21) L2b|LINE|L2 62250 NM_001039500 127731 Hs.205178 NM_144623 ENSG00000158816 VWA5B1 - von Willebrand factor A domain containing 5B1 protein-coding 121.667-79 chr5 159109685 159110232 + 0.333333 NA intron (NR_109890, intron 1 of 2) intron (NR_109890, intron 1 of 2) 9475 NR_109890 101927740 Hs.738721 NR_109890 ENSG00000245812 LINC02202 - long intergenic non-protein coding RNA 2202 ncRNA 121.5-78 chr4 172036588 172037065 + 0.333333 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -223219 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 126.667-50 chr21 27648505 27649079 + 0.333333 NA Intergenic Intergenic -73587 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 130.167-27 chr19 52596465 52597049 + 0.333333 NA promoter-TSS (NR_023311) promoter-TSS (NR_023311) 73 NR_023311 7696 Hs.373648 NM_003438 ZNF137P ZNF137|pHZ-30 zinc finger protein 137, pseudogene pseudo 168.667-38 chr2 179543449 179544290 + 0.333333 NA intron (NR_104234, intron 4 of 12) intron (NR_104234, intron 4 of 12) 18719 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 125.5-19 chr14 25153320 25153925 + 0.333333 NA Intergenic THE1A|LTR|ERVL-MaLR -103325 NM_001351942 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 117-80 chr4 82623968 82624527 + 0.333333 NA Intergenic Intergenic -2810 NR_024088 439934 Hs.457189 NM_001033661 ENSG00000231782 LINC00575 C4orf11 long intergenic non-protein coding RNA 575 ncRNA 120.667-115 chr8 86878721 86879375 + 0.333333 NA intron (NM_173538, intron 1 of 10) intron (NM_173538, intron 1 of 10) 12633 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 119.5-92 chr7 11911622 11912212 + 0.333333 NA Intergenic Intergenic -79719 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 148.167-72 chr6 46382215 46382722 + 0.333333 NA intron (NM_001251973, intron 2 of 4) intron (NM_001251973, intron 2 of 4) -56576 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 115.833-78 chr8 92435585 92436185 + 0.333333 NA Intergenic Intergenic 219609 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 155.167-48 chr8 28170070 28170791 + 0.333333 NA intron (NM_018091, intron 14 of 14) intron (NM_018091, intron 14 of 14) 77291 NM_001284220 55140 Hs.491336 NM_018091 ENSG00000134014 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 114.333-26 chr12 45029915 45030259 + 0.333333 NA intron (NM_001004329, intron 2 of 3) intron (NM_001004329, intron 2 of 3) 21012 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 118-61 chr2 209479596 209480065 + 0.333333 NA intron (NM_001039538, intron 1 of 14) intron (NM_001039538, intron 1 of 14) 55783 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 124.167-49 chr2 168971652 168972026 + 0.333333 NA intron (NM_003742, intron 14 of 27) intron (NM_003742, intron 14 of 27) 59485 NM_003742 8647 Hs.158316 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 114.5-4 chr1 97059101 97059571 + 0.333333 NA Intergenic Intergenic -36587 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 117-43 chr17 68695468 68696076 + 0.333333 NA Intergenic Intergenic 67618 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 122.5-68 chr4 65028709 65029338 + 0.333333 NA Intergenic L1MC1|LINE|L1 -24523 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 152.5-21 chr17 61856088 61856882 + 0.333333 NA intron (NM_032043, intron 4 of 19) intron (NM_032043, intron 4 of 19) 7074 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 122.5-63 chr3 112823400 112823803 + 0.333333 NA intron (NM_001370552, intron 6 of 7) intron (NM_001370552, intron 6 of 7) 21123 NR_149027 100129297 Hs.570655 NR_149026 CD200R1L-AS1 - CD200R1L antisense RNA 1 ncRNA 144.667-60 chr20 51152417 51153022 + 0.333333 NA Intergenic L1ME3A|LINE|L1 -129612 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 131.167-23 chr14 45409740 45410457 + 0.333333 NA Intergenic THE1B|LTR|ERVL-MaLR -156896 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 121.5-72 chr4 22813432 22813855 + 0.333333 NA intron (NR_102357, intron 4 of 4) MLT2A1|LTR|ERVL 99554 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 126.667-40 chr2 68760160 68760623 + 0.333333 NA intron (NM_001364821, intron 1 of 10) L1MB3|LINE|L1 -14519 NM_014882 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 142.5-59 chr5 40948495 40948982 + 0.333333 NA intron (NM_000587, intron 8 of 17) intron (NM_000587, intron 8 of 17) 39241 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 117.333-112 chr8 129920154 129920782 + 0.333333 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) 19343 NM_001353313 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 123.333-20 chr10 80845423 80845866 + 0.333333 NA Intergenic LTR49-int|LTR|ERV1 195847 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 159.834-3 chr3 127257488 127258395 + 0.333333 NA Intergenic Intergenic 30105 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 134.5-38 chr18 70631689 70632493 + 0.333333 NA intron (NR_160904, intron 2 of 2) intron (NR_160904, intron 2 of 2) 18863 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 120-8 chr1 226623789 226624314 + 0.333333 NA Intergenic AluSq2|SINE|Alu 51017 NR_103784 100506443 Hs.664293 NR_103784 ITPKB-IT1 - ITPKB intronic transcript 1 ncRNA 129.833-50 chr4 171628186 171628830 + 0.333333 NA intron (NR_147157, intron 2 of 4) AluSx1|SINE|Alu 10255 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 122.833-41 chr19 30511549 30512135 + 0.333333 NA intron (NM_014717, intron 2 of 4) intron (NM_014717, intron 2 of 4) 139458 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 149.667-70 chr7 3710456 3710976 + 0.333333 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) 409464 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 125.667-95 chr5 30984767 30985340 + 0.333333 NA Intergenic Intergenic -208633 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 123.167-63 chr3 131418404 131419107 + 0.333333 NA Intergenic MamTip2|DNA|hAT-Tip100 36981 NM_152395 131870 Hs.282050 NM_152395 ENSG00000198585 NUDT16 - nudix hydrolase 16 protein-coding 125.667-111 chr7 21821746 21822463 + 0.333333 NA intron (NM_001277115, intron 65 of 81) MSTB|LTR|ERVL-MaLR 123795 NM_001127370 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 123.167-31 chr15 72851567 72852291 + 0.333333 NA Intergenic AluSz6|SINE|Alu -68171 NM_001365225 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 144.167-14 chr11 90434524 90435040 + 0.333333 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 121075 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 113.5-73 chr5 60111844 60112336 + 0.333333 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) -218364 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 134.333-107 chr9 92825813 92826504 + 0.333333 NA intron (NR_026868, intron 6 of 9) MER58A|DNA|hAT-Charlie 16547 NR_026868 138649 Hs.643597 NM_001010925 ENSG00000187984 ANKRD19P ANKRD19|bA526D8.2 ankyrin repeat domain 19, pseudogene pseudo 183.5-12 chr14 29345650 29346528 + 0.333333 NA Intergenic Intergenic -560302 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 130.5-41 chr2 48540613 48541267 + 0.333333 NA intron (NM_001198595, intron 2 of 4) MER21A|LTR|ERVL 10771 NM_006873 11037 Hs.44385 NM_006873 ENSG00000243244 STON1 SALF|SBLF|STN1|STNB1 stonin 1 protein-coding 128.5-44 chr20 13776586 13776993 + 0.333333 NA intron (NM_001276380, intron 2 of 13) L2b|LINE|L2 8097 NM_016649 51575 Hs.369284 NM_016649 ENSG00000089048 ESF1 ABTAP|C20orf6|HDCMC28P|bA526K24.1 ESF1 nucleolar pre-rRNA processing protein homolog protein-coding 128.667-5 chr1 101316971 101317530 + 0.333333 NA Intergenic AluSz|SINE|Alu -6587 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 133.667-64 chr3 98441005 98441718 + 0.333333 NA Intergenic L1MC3|LINE|L1 -28119 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 117-120 chr8 73896921 73897313 + 0.333333 NA Intergenic MER21C|LTR|ERVL 18135 NR_147034 101926947 Hs.521636 NR_147034 LINC01617 C8orf23|NCRNA00249|XLOC_006844 long intergenic non-protein coding RNA 1617 ncRNA 123.5-76 chr7 40740991 40741532 + 0.333333 NA intron (NM_024728, intron 13 of 14) AluSz6|SINE|Alu 238678 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 162.167-56 chrX 63384946 63385589 + 0.333333 NA Intergenic Intergenic -33935 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 126.667-65 chr4 53562140 53562803 + 0.333333 NA intron (NM_001126328, intron 2 of 10) intron (NM_001126328, intron 2 of 10) -4202 NM_032622 84708 Hs.518760 NM_032622 ENSG00000072201 LNX1 LNX|MPDZ|PDZRN2 ligand of numb-protein X 1 protein-coding 119.5-12 chr10 5599085 5599697 + 0.333333 NA Intergenic Charlie1b|DNA|hAT-Charlie -3273 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LINC02657 - long intergenic non-protein coding RNA 2657 ncRNA 129-105 chrX 8000810 8001336 + 0.333333 NA Intergenic THE1D|LTR|ERVL-MaLR -73334 NM_001172672 8228 Hs.264 NM_004650 ENSG00000006757 PNPLA4 DXS1283E|GS2|iPLA2eta patatin like phospholipase domain containing 4 protein-coding 131.833-28 chr17 65714480 65714953 + 0.333333 NA intron (NR_126542, intron 2 of 5) intron (NR_126542, intron 2 of 5) 111735 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 114.667-105 chr5 160927288 160927910 + 0.333333 NA Intergenic Intergenic 11027 NR_151858 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 128.333-104 chr6 52894340 52894770 + 0.333333 NA Intergenic Intergenic 15143 NM_001363542 2940 Hs.102484 NM_000847 ENSG00000174156 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 163.334-8 chr8 124369675 124370495 + 0.333333 NA intron (NM_194291, intron 1 of 6) intron (NM_194291, intron 1 of 6) 2614 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 119.334-2 chr11 114179228 114179934 + 0.333333 NA intron (NM_001354752, intron 2 of 4) intron (NM_001354752, intron 2 of 4) -116232 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 115.5-106 chr9 19308787 19309376 + 0.333333 NA intron (NR_073201, intron 10 of 31) L1MB8|LINE|L1 71155 NM_001010 6194 Hs.408073 NM_001010 ENSG00000137154 RPS6 S6 ribosomal protein S6 protein-coding 118.167-51 chr4 98156884 98157447 + 0.333333 NA Intergenic HUERS-P1-int|LTR|ERV1 -13689 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 130.5-13 chr11 38291432 38292204 + 0.333333 NA Intergenic Intergenic 353217 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 129.833-7 chr10 54090356 54091030 + 0.333333 NA intron (NM_001354411, intron 16 of 34) intron (NM_001354411, intron 16 of 34) -395537 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 137.667-47 chr19 45699545 45700175 + 0.333333 NA intron (NM_017659, intron 5 of 6) AluSx|SINE|Alu 7194 NM_017659 54814 Hs.631556 NM_017659 ENSG00000011478 QPCTL gQC glutaminyl-peptide cyclotransferase like protein-coding 148-35 chr16 46398235 46398920 + 0.333333 NA Intergenic Intergenic 170520 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 119.333-92 chr6 10033948 10034376 + 0.333333 NA Intergenic L1M5|LINE|L1 -370340 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 117.667-111 chr6 68822843 68823410 + 0.333333 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 187844 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 138-104 chr8 74242743 74243231 + 0.333333 NA intron (NM_020647, intron 4 of 5) intron (NM_020647, intron 4 of 5) 78374 NM_001363050 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 119.334-4 chr4 24138221 24138866 + 0.333333 NA intron (NR_148982, intron 1 of 13) intron (NR_148982, intron 1 of 13) -248496 NM_013261 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 119.5-107 chr9 73346569 73347039 + 0.333333 NA Intergenic Intergenic 194939 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 115.334-3 chr20 34879404 34880094 + 0.333333 NA intron (NM_001076552, intron 1 of 18) intron (NM_001076552, intron 1 of 18) 3137 NM_018677 55902 Hs.517034 NM_018677 ENSG00000131069 ACSS2 ACAS2|ACECS|ACS|ACSA|dJ1161H23.1 acyl-CoA synthetase short chain family member 2 protein-coding 131.333-40 chr18 59698053 59698591 + 0.333333 NA promoter-TSS (NM_133459) promoter-TSS (NM_133459) -899 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 146.334-5 chr5 80001932 80002696 + 0.333333 NA intron (NM_001306213, intron 2 of 22) intron (NM_001306213, intron 2 of 22) 11018 NM_001306213 7060 Hs.211426 NM_003248 ENSG00000113296 THBS4 TSP-4|TSP4 thrombospondin 4 protein-coding 142.167-5 chr1 213248541 213249116 + 0.333333 NA intron (NM_001136138, intron 11 of 13) intron (NM_001136138, intron 11 of 13) 197587 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 168-6 chr1 204111218 204111844 + 0.333333 NA intron (NM_005686, intron 1 of 13) intron (NM_005686, intron 1 of 13) -29877 NR_123739 101929441 Hs.736889 NR_123739 ENSG00000230550 ERLNC1 ElncRNA1|TC0101441 estrogen receptor responsive lncRNA 1 ncRNA 153.333-42 chr20 36118004 36118676 + 0.333333 NA intron (NM_001258329, intron 2 of 22) AluSx|SINE|Alu 25630 NM_001258330 2036 Hs.437422 NM_012156 ENSG00000088367 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1 like 1 protein-coding 134.834 chr1 97012988 97013795 + 0.333333 NA Intergenic Intergenic -82532 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 116.5-5 chr1 186826730 186827356 + 0.333333 NA Intergenic Intergenic -1857 NM_024420 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 121.167-15 chr10 27895733 27896249 + 0.333333 NA intron (NM_001290021, intron 10 of 13) LTR81B|LTR|Gypsy 85880 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 131-67 chr7 156134174 156134887 + 0.333333 NA Intergenic L1MD1|LINE|L1 171898 NM_001291913 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 155.5-15 chr14 77606895 77607588 + 0.333333 NA intron (NM_004863, intron 1 of 11) MIR3|SINE|MIR 9526 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 117-107 chr7 12874125 12874819 + 0.333333 NA Intergenic AluY|SINE|Alu 186839 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 120.833-75 chr9 19846099 19846736 + 0.333333 NA Intergenic L1PA16|LINE|L1 -59398 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 116.5-61 chr4 70881710 70882339 + 0.333333 NA Intergenic FLAM_C|SINE|Alu -20345 NM_001244766 92597 Hs.691454 NM_173468 ENSG00000173542 MOB1B MATS2|MOB4A|MOBKL1A MOB kinase activator 1B protein-coding 116.5-99 chrY 11293518 11294031 + 0.333333 NA Intergenic AluJb|SINE|Alu 1127816 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 121-58 chr22 46452632 46453206 + 0.333333 NA intron (NM_014246, intron 2 of 34) intron (NM_014246, intron 2 of 34) 84701 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 138.667-55 chr21 34571199 34571885 + 0.333333 NA intron (NM_004414, intron 1 of 3) intron (NM_004414, intron 1 of 3) 42301 NM_001285389 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 121.5-2 chr1 32851785 32852439 + 0.333333 NA intron (NR_135107, intron 5 of 6) AluSx1|SINE|Alu 18701 NM_001171940 252995 Hs.524234 NM_153756 ENSG00000160097 FNDC5 FRCP2|irisin fibronectin type III domain containing 5 protein-coding 113.833-87 chr8 83075686 83076167 + 0.333333 NA Intergenic L1M4|LINE|L1 163822 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 119.833-92 chr9 29487434 29487963 + 0.333333 NA Intergenic L1ME1|LINE|L1 -274097 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 186.833-34 chr4 135516088 135516820 + 0.333333 NA Intergenic Intergenic 371639 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 123.5-88 chr8 132782033 132782613 + 0.333333 NA intron (NM_198513, intron 2 of 7) MIRc|SINE|MIR 6935 NM_001277196 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 137.833-59 chr9 82207249 82207905 + 0.333333 NA Intergenic Intergenic 218805 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 118.333-98 chr6 9984455 9984943 + 0.333333 NA Intergenic Intergenic -419803 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 124.833-59 chr3 22634732 22635253 + 0.333333 NA Intergenic L1MB2|LINE|L1 567586 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 128.834-5 chr18 46377306 46378059 + 0.333333 NA intron (NM_001256758, intron 1 of 5) L2b|LINE|L2 43458 NR_046357 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|Ark2C|RNF111L2 ring finger protein 165 protein-coding 113.334-2 chr2 58296952 58297609 + 0.333333 NA TTS (NR_147010) TTS (NR_147010) 21403 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 136.833-57 chr5 89758119 89758745 + 0.333333 NA Intergenic Intergenic 258288 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 133.167-68 chr8 113947403 113948024 + 0.333333 NA Intergenic Intergenic -510774 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 160.334-3 chr16 8362745 8363572 + 0.333333 NA Intergenic Intergenic 226680 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 120.333-43 chr14 61443704 61444087 + 0.333333 NA intron (NM_006255, intron 3 of 13) intron (NM_006255, intron 3 of 13) 122452 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 142.833-15 chr14 83016640 83017353 + 0.333333 NA Intergenic Intergenic 374364 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 128.667-98 chr6 53302046 53302493 + 0.333333 NA intron (NM_001242830, intron 1 of 6) intron (NM_001242830, intron 1 of 6) 25276 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 118.667-62 chr2 153279146 153279607 + 0.333333 NA Intergenic L1PA16|LINE|L1 199386 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 129.667-23 chr12 52598996 52599661 + 0.333333 NA intron (NM_080747, intron 1 of 8) intron (NM_080747, intron 1 of 8) 2135 NM_001146226 140807 Hs.662013 NM_080747 ENSG00000170486 KRT72 K6IRS2|K6irs|KRT6|KRT6IRS2 keratin 72 protein-coding 150-25 chr15 40570192 40570819 + 0.333333 NA intron (NM_152260, intron 1 of 2) intron (NM_152260, intron 1 of 2) 1206 NM_152260 27079 Hs.173311 NM_152260 ENSG00000166133 RPUSD2 C15orf19|C18B11|PUS9 RNA pseudouridine synthase domain containing 2 protein-coding 124-93 chr8 41699283 41699780 + 0.333333 NA exon (NM_001142446, exon 24 of 43) exon (NM_001142446, exon 24 of 43) -34257 NM_020480 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 126.333-66 chr20 16045491 16045983 + 0.333333 NA intron (NM_001351663, intron 17 of 17) MER87|LTR|ERV1 -59855 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 139.333-28 chr12 81316540 81317234 + 0.333333 NA intron (NM_001220474, intron 20 of 30) intron (NM_001220474, intron 20 of 30) 37698 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 133.167-34 chr2 215393441 215394121 + 0.333333 NA intron (NM_212482, intron 24 of 45) intron (NM_212482, intron 24 of 45) 42287 NM_212482 2335 Hs.203717 NM_002026 ENSG00000115414 FN1 CIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF|SMDCF fibronectin 1 protein-coding 117.667-62 chr2 100867505 100867934 + 0.333333 NA intron (NM_002518, intron 1 of 20) FLAM_C|SINE|Alu 47580 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 126-86 chr7 29434803 29435364 + 0.333333 NA intron (NM_001293072, intron 6 of 12) AluJb|SINE|Alu -44629 NM_001293079 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 139.167-18 chr13 62859994 62860666 + 0.333333 NA Intergenic Intergenic -52971 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 160.833-43 chr6 82752905 82753652 + 0.333333 NA Intergenic HAL1ME|LINE|L1 312563 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 128.667-23 chr11 32275256 32275908 + 0.333333 NA Intergenic AluSc|SINE|Alu 124818 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 115.167-106 chr8 102390916 102391449 + 0.333333 NA intron (NM_001282873, intron 1 of 58) Tigger18a|DNA|TcMar-Tigger 21507 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 117.333-2 chr1 24178914 24179360 + 0.333333 NA intron (NM_173065, intron 2 of 5) AluJb|SINE|Alu 8152 NM_173064 163702 Hs.221375 NM_170743 ENSG00000185436 IFNLR1 CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2 interferon lambda receptor 1 protein-coding 166.667-55 chr7 49174150 49174886 + 0.333333 NA Intergenic MIRb|SINE|MIR 249971 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 127-9 chr10 80553672 80554265 + 0.333333 NA intron (NM_001145719, intron 1 of 6) MIR|SINE|MIR 13149 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 149.833-20 chr2 159249479 159250185 + 0.333333 NA intron (NM_001330279, intron 8 of 9) AluSz6|SINE|Alu 36871 NM_001128213 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 157.333-26 chr15 68311825 68312447 + 0.333333 NA intron (NM_001004439, intron 24 of 29) MLT1J|LTR|ERVL-MaLR 34391 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 140.667-31 chr15 57209448 57209981 + 0.333333 NA intron (NM_207038, intron 8 of 19) L2a|LINE|L2 -9716 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 121.333-77 chr4 136356793 136357308 + 0.333333 NA Intergenic MLT1D|LTR|ERVL-MaLR -443370 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 117.333-24 chr14 20993435 20993846 + 0.333333 NA intron (NM_022734, intron 6 of 13) AluSx4|SINE|Alu 3660 NM_001029991 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 122.833-89 chr8 128422249 128422701 + 0.333333 NA intron (NR_121672, intron 4 of 7) intron (NR_121672, intron 4 of 7) 142204 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 171.834-7 chr5 38904758 38905720 + 0.333333 NA intron (NM_003999, intron 9 of 17) AluSg|SINE|Alu 59227 NM_003999 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 140.5-25 chr15 94830490 94831017 + 0.333333 NA Intergenic LTR27E|LTR|ERV1 -24610 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 128.833-52 chr21 46017777 46018272 + 0.333333 NA Intergenic AluJb|SINE|Alu 36275 NM_001848 1291 Hs.474053 NM_001848 ENSG00000142156 COL6A1 BTHLM1|OPLL|UCHMD1 collagen type VI alpha 1 chain protein-coding 116.667-101 chr7 54781286 54781767 + 0.333333 NA intron (NR_110040, intron 1 of 2) MIRb|SINE|MIR 22213 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 141.667-31 chr16 14312213 14312966 + 0.333333 NA intron (NR_132983, intron 1 of 1) LTR48B|LTR|ERV1 3304 NR_029854 100126355 NR_029854 ENSG00000199130 MIR365A MIR365-1|MIRN365-1|hsa-mir-365a|mir-365a microRNA 365a ncRNA 129.333-42 chr18 29955558 29956164 + 0.333333 NA Intergenic Intergenic -343049 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 113.5-50 chr2 103463053 103463504 + 0.333333 NA Intergenic Intergenic -478849 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 137.5-33 chr14 80687472 80688198 + 0.333333 NA intron (NM_152446, intron 19 of 24) L1PA10|LINE|L1 253903 NR_157142 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 166.5-4 chr10 60257180 60257962 + 0.333333 NA intron (NM_001204403, intron 8 of 43) intron (NM_001204403, intron 8 of 43) -116555 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 131.5-80 chr7 109979416 109980146 + 0.333333 NA Intergenic Intergenic -19568 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 130.5-22 chr14 75625246 75625843 + 0.333333 NA intron (NM_017791, intron 3 of 9) CR1-3_Croc|LINE|CR1 20004 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 129-82 chr6 38874433 38874904 + 0.333333 NA intron (NM_001371, intron 51 of 91) AluJo|SINE|Alu 78439 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 137.667-41 chr17 69587064 69587834 + 0.333333 NA Intergenic Intergenic -6538 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 130-5 chr1 115548402 115548950 + 0.333333 NA Intergenic Intergenic -93294 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 139.667-47 chr19 49699151 49699739 + 0.333333 NA intron (NM_152359, intron 3 of 18) FLAM_C|SINE|Alu 8329 NR_108072 126129 Hs.112195 NM_152359 ENSG00000169169 CPT1C CATL1|CPT1-B|CPT1P|CPTI-B|CPTIC|SPG73 carnitine palmitoyltransferase 1C protein-coding 159.334 chr14 37449183 37450134 + 0.333333 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 145591 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 139-16 chr14 61156988 61157506 + 0.333333 NA Intergenic LTR85c|LTR|Gypsy? 124091 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 143.167-76 chr7 42291800 42292563 + 0.333333 NA Intergenic Intergenic -54972 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 116.333-75 chr4 160146474 160147022 + 0.333333 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR -368964 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 129.333-39 chr17 29603329 29603942 + 0.333333 NA intron (NM_152345, intron 1 of 14) L1MEc|LINE|L1 10503 NM_152345 124930 Hs.662164 NM_152345 ENSG00000198720 ANKRD13B - ankyrin repeat domain 13B protein-coding 127.833-75 chr8 36041221 36041877 + 0.333333 NA Intergenic Intergenic -331229 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 147.333-58 chr3 163816973 163817457 + 0.333333 NA Intergenic Intergenic 354341 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 131.833-65 chr7 80326645 80327285 + 0.333333 NA Intergenic L1PA10|LINE|L1 47474 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 148-18 chr10 105012534 105013241 + 0.333333 NA intron (NM_014978, intron 4 of 26) intron (NM_014978, intron 4 of 26) -346671 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 139.5-45 chr4 30394114 30394838 + 0.333333 NA Intergenic Intergenic -325893 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 154.5-30 chr18 48193132 48193974 + 0.333333 NA intron (NM_001371285, intron 1 of 5) intron (NM_001371285, intron 1 of 5) 373 NM_001371288 134.833-29 chr2 83494218 83494804 + 0.333333 NA Intergenic L1MC2|LINE|L1 -28303 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 122.833-73 chr5 107005178 107005564 + 0.333333 NA intron (NR_104671, intron 1 of 3) intron (NR_104671, intron 1 of 3) 5643 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 146.5-86 chr8 64950292 64950750 + 0.333333 NA Intergenic MSTA|LTR|ERVL-MaLR -151784 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 134.167-79 chr8 51591621 51592217 + 0.333333 NA intron (NM_144651, intron 3 of 22) intron (NM_144651, intron 3 of 22) 217526 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 145.333-39 chr2 121500991 121501655 + 0.333333 NA intron (NM_015282, intron 8 of 38) intron (NM_015282, intron 8 of 38) -29557 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 118.5-57 chr2 218498369 218498872 + 0.333333 NA intron (NM_020935, intron 11 of 25) AluSz|SINE|Alu 69731 NM_020935 57695 Hs.166068 NM_020935 ENSG00000135913 USP37 - ubiquitin specific peptidase 37 protein-coding 125-6 chr1 152332751 152333300 + 0.333333 NA intron (NR_103778, intron 3 of 6) intron (NR_103778, intron 3 of 6) -4043 NR_103779 339400 Hs.23783 NR_103778 ENSG00000237975 FLG-AS1 - FLG antisense RNA 1 ncRNA 119.167-66 chr3 193037921 193038552 + 0.333333 NA Intergenic Intergenic -120380 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 128.833-28 chr15 69914516 69915125 + 0.333333 NA Intergenic Intergenic 79586 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 115.5-87 chr6 39894259 39894718 + 0.333333 NA intron (NR_125831, intron 1 of 3) L1ME3A|LINE|L1 2892 NR_125831 100505635 Hs.668513 NR_125831 ENSG00000235033 LOC100505635 - uncharacterized LOC100505635 ncRNA 142.667-101 chr9 75464483 75465088 + 0.333333 NA Intergenic Intergenic 376271 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 135.5-11 chr10 18381771 18382311 + 0.333333 NA intron (NM_201590, intron 1 of 12) intron (NM_201590, intron 1 of 12) -18534 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 129.5-64 chr4 77268880 77269350 + 0.333333 NA Intergenic Intergenic 111908 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 125-23 chr12 92819082 92819829 + 0.333333 NA exon (NM_003566, exon 14 of 29) exon (NM_003566, exon 14 of 29) 82966 NM_001004330 440107 Hs.591013 NM_001004330 ENSG00000187510 PLEKHG7 - pleckstrin homology and RhoGEF domain containing G7 protein-coding 130-60 chr2 220271035 220271485 + 0.333333 NA Intergenic AluSc5|SINE|Alu -364695 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 125.833-14 chr11 69159418 69160028 + 0.333333 NA TTS (NM_001369201) TTS (NM_001369201) 3788 NR_161183 107984345 NM_001369201 SMIM38 - small integral membrane protein 38 protein-coding 127.167-54 chr3 73514262 73515012 + 0.333333 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) -6685 NR_121660 101927296 Hs.662049 NR_121660 LOC101927296 - uncharacterized LOC101927296 ncRNA 142.5-34 chr19 31206678 31207225 + 0.333333 NA intron (NR_138036, intron 2 of 4) intron (NR_138036, intron 2 of 4) 39441 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 113.667-96 chr4 149327275 149327795 + 0.333333 NA Intergenic Intergenic 173240 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 113.333-77 chr3 192861420 192861901 + 0.333333 NA intron (NM_178496, intron 1 of 1) AluSp|SINE|Alu 56196 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 117.5-27 chr2 111691481 111692090 + 0.333333 NA Intergenic MER121|DNA|hAT? 79349 NR_039929 100616165 NR_039929 ENSG00000266063 MIR4771-2 - microRNA 4771-2 ncRNA 120-2 chr1 81418267 81418889 + 0.333333 NA intron (NM_001366004, intron 2 of 27) AluY|SINE|Alu 112183 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 115.334 chr12 49691736 49692396 + 0.333333 NA intron (NM_001367835, intron 1 of 26) intron (NM_001367835, intron 1 of 26) 15339 NM_175736 91010 Hs.179838 NM_175736 ENSG00000161791 FMNL3 FHOD3|FRL2|WBP-3|WBP3 formin like 3 protein-coding 133.667-9 chr1 151269808 151270301 + 0.333333 NA Intergenic HAL1|LINE|L1 -11468 NM_001304764 57592 Hs.186756 NM_020832 ENSG00000143373 ZNF687 PDB6 zinc finger protein 687 protein-coding 128.667-59 chr19 13295864 13296435 + 0.333333 NA intron (NM_023035, intron 19 of 46) MER5A1|DNA|hAT-Charlie 145738 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 149.167-51 chr6 46813114 46813639 + 0.333333 NA intron (NM_005588, intron 6 of 13) L1PB1|LINE|L1 19987 NM_005588 4224 Hs.179704 NM_005588 ENSG00000112818 MEP1A PPHA meprin A subunit alpha protein-coding 118.167-59 chr7 8003685 8004376 + 0.333333 NA exon (NM_138426, exon 2 of 8) exon (NM_138426, exon 2 of 8) 35234 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 145.667-15 chr11 33404739 33405494 + 0.333333 NA intron (NM_012194, intron 1 of 20) intron (NM_012194, intron 1 of 20) 29008 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 135.5-87 chr9 28713629 28714163 + 0.333333 NA intron (NM_001354574, intron 2 of 5) AluSq2|SINE|Alu 5409 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 142-9 chr1 236319546 236320113 + 0.333333 NA Intergenic Intergenic -37871 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 114-35 chr12 96619605 96619985 + 0.333333 NA intron (NM_001306084, intron 26 of 67) intron (NM_001306084, intron 26 of 67) 130218 NM_001367885 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 143.167-55 chr4 57245368 57246208 + 0.333333 NA Intergenic L1PA16|LINE|L1 -135403 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 126.333-52 chr19 50747929 50748440 + 0.333333 NA Intergenic Intergenic -22280 NM_001506 2854 Hs.515555 NM_001506 ENSG00000142511 GPR32 RVDR1 G protein-coupled receptor 32 protein-coding 123.667-122 chrX 63753140 63753624 + 0.333333 NA intron (NM_001369036, intron 1 of 10) intron (NM_001369036, intron 1 of 10) 1741 NM_001369042 23229 Hs.54697 NM_015185 ENSG00000131089 ARHGEF9 COLLYBISTIN|EIEE8|HPEM-2|PEM-2|PEM2 Cdc42 guanine nucleotide exchange factor 9 protein-coding 114.667-18 chr12 17545025 17545438 + 0.333333 NA Intergenic L1MA4A|LINE|L1 43847 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 149.334-11 chr8 107176017 107176811 + 0.333333 NA Intergenic L1MB8|LINE|L1 160101 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 120.333-26 chr11 57886113 57886749 + 0.333333 NA Intergenic AluSz|SINE|Alu 124629 NM_001206884 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 132.667-31 chr14 60978075 60978584 + 0.333333 NA intron (NM_020810, intron 2 of 4) intron (NM_020810, intron 2 of 4) 2750 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 129.167-41 chr2 166429967 166430605 + 0.333333 NA intron (NR_045628, intron 16 of 25) intron (NR_045628, intron 16 of 25) -54299 NM_002977 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 162.333-71 chr7 103388909 103389540 + 0.333333 NA intron (NR_120443, intron 10 of 14) intron (NR_120443, intron 10 of 14) 41581 NM_002803 5701 Hs.437366 NM_002803 ENSG00000161057 PSMC2 MSS1|Nbla10058|S7 proteasome 26S subunit, ATPase 2 protein-coding 116.167-42 chr22 37775014 37775486 + 0.333333 NA 3' UTR (NM_007032, exon 14 of 14) 3' UTR (NM_007032, exon 14 of 14) 29016 NM_007032 11078 Hs.533030 NM_007032 ENSG00000100106 TRIOBP DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4 TRIO and F-actin binding protein protein-coding 127.667-72 chr5 36948609 36949205 + 0.333333 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 72138 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 116.5-69 chr5 59858599 59859230 + 0.333333 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 34812 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 116.667-77 chr3 113181067 113181750 + 0.333333 NA Intergenic MLT1A1|LTR|ERVL-MaLR -13677 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 125.833-21 chr14 95107090 95107589 + 0.333333 NA intron (NM_001291628, intron 17 of 26) AluSc|SINE|Alu 26164 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 138.333-54 chr19 5557653 5558219 + 0.333333 NA TTS (NR_027064) TTS (NR_027064) 10098 NR_027064 257000 Hs.515575 NM_153375 ENSG00000223573 TINCR LINC00036|NCRNA00036|PLAC2|onco-lncRNA-16 TINCR ubiquitin domain containing ncRNA 130.834-2 chr11 34626495 34627191 + 0.333333 NA intron (NM_012153, intron 1 of 8) MIRc|SINE|MIR -5723 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 132.834-6 chr6 162058170 162058918 + 0.333333 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) 587567 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 135-23 chr14 39581317 39581831 + 0.333333 NA Intergenic Intergenic -149074 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 139.333-72 chr5 28797101 28797614 + 0.333333 NA Intergenic (TATATA)n|Simple_repeat|Simple_repeat -129513 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 134.667-64 chr3 2302874 2303487 + 0.333333 NA intron (NM_001206955, intron 1 of 23) MIR|SINE|MIR 64351 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 121.167-82 chr7 71850208 71850827 + 0.333333 NA intron (NM_001363460, intron 4 of 5) L1ME3G|LINE|L1 486874 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 127.167-64 chr4 13728541 13728971 + 0.333333 NA intron (NR_121681, intron 2 of 3) intron (NR_121681, intron 2 of 3) 73577 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 151.167-15 chr14 38677558 38678146 + 0.333333 NA Intergenic Intergenic -204744 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 167.833-56 chr8 110355654 110356284 + 0.333333 NA Intergenic Intergenic -380198 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 121.833-74 chr8 102258421 102259048 + 0.333333 NA intron (NM_001282873, intron 57 of 58) intron (NM_001282873, intron 57 of 58) 19283 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 178.833 chr1 31941524 31942177 + 0.333333 NA Intergenic AluSg|SINE|Alu -3482 NM_001195101 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase 4A2 protein-coding 129.833-39 chr21 42328643 42329032 + 0.333333 NA Intergenic L1ME3Cz|LINE|L1 -13241 NM_003226 7033 Hs.82961 NM_003226 ENSG00000160180 TFF3 ITF|P1B|TFI trefoil factor 3 protein-coding 114-76 chr5 27546879 27547286 + 0.333333 NA Intergenic L1PA13|LINE|L1 74790 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 140-72 chr6 130856247 130856875 + 0.333333 NA intron (NM_001350320, intron 15 of 15) L1M5|LINE|L1 29156 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 124.167-28 chr15 65813774 65814327 + 0.333333 NA Intergenic AluJo|SINE|Alu -21757 NM_001320835 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 120.167-26 chr16 53007869 53008370 + 0.333333 NA Intergenic L1PB1|LINE|L1 44754 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 115.833-72 chr7 45395116 45395728 + 0.333333 NA Intergenic L1M4|LINE|L1 -178718 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 130.5-78 chr9 9108448 9108988 + 0.333333 NA intron (NM_002839, intron 10 of 45) MLT1I|LTR|ERVL-MaLR 250700 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 134.167-83 chr8 112999045 112999605 + 0.333333 NA intron (NM_198123, intron 6 of 70) L2a|LINE|L2 355832 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 124.5-79 chr8 133949937 133950395 + 0.333333 NA Intergenic AluSz|SINE|Alu 63670 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 121.167-58 chr3 164079320 164079983 + 0.333333 NA Intergenic MER57-int|LTR|ERV1 91905 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 124.5-36 chr2 124943688 124944368 + 0.333333 NA Intergenic L2a|LINE|L2 918741 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 137.667-3 chr1 84950168 84950913 + 0.333333 NA intron (NM_153259, intron 6 of 13) intron (NM_153259, intron 6 of 13) 46573 NM_153259 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 150.167-40 chr3 16453707 16454213 + 0.333333 NA intron (NM_015150, intron 2 of 9) intron (NM_015150, intron 2 of 9) 59739 NM_015150 23180 Hs.98910 NM_015150 ENSG00000131378 RFTN1 MIG2|PIB10|PIG9|RAFTLIN raftlin, lipid raft linker 1 protein-coding 138.5-20 chr13 43220566 43221252 + 0.333333 NA intron (NM_001347966, intron 17 of 17) intron (NM_001347966, intron 17 of 17) 107744 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 127.167-41 chr17 68463775 68464260 + 0.333333 NA intron (NM_001278433, intron 1 of 10) MER103C|DNA|hAT-Charlie -6493 NR_135471 55062 Hs.463964 NM_017983 ENSG00000070540 WIPI1 ATG18|ATG18A|WIPI49 WD repeat domain, phosphoinositide interacting 1 protein-coding 128-38 chr17 61896944 61897396 + 0.333333 NA intron (NM_001351695, intron 11 of 24) intron (NM_001351695, intron 11 of 24) 30812 NM_001351695 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 124.334-8 chrX 12407871 12408587 + 0.333333 NA intron (NM_001368402, intron 2 of 17) LTR47A|LTR|ERVL -90451 NM_001368400 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 122.167-52 chr4 63720108 63720733 + 0.333333 NA Intergenic THE1D|LTR|ERVL-MaLR 689030 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 116.167-14 chr10 44024644 44025141 + 0.333333 NA Intergenic MER5A1|DNA|hAT-Charlie 112490 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 115.167-57 chr2 72764682 72765215 + 0.333333 NA intron (NR_135774, intron 1 of 19) intron (NR_135774, intron 1 of 19) 61085 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 123.667-53 chr2 130386828 130387410 + 0.333333 NA Intergenic (A)n|Simple_repeat|Simple_repeat 31063 NM_014369 26469 Hs.516390 NM_014369 ENSG00000072135 PTPN18 BDP1|PTP-HSCF protein tyrosine phosphatase non-receptor type 18 protein-coding 114.5-11 chr10 18423318 18423734 + 0.333333 NA intron (NM_201593, intron 3 of 13) intron (NM_201593, intron 3 of 13) 22951 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 137.667-50 chr2 57857649 57858288 + 0.333333 NA Intergenic L1PA16|LINE|L1 -49683 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 125.833-100 chrX 139701624 139702197 + 0.333333 NA intron (NM_001099855, intron 1 of 27) intron (NM_001099855, intron 1 of 27) 6257 NM_001171876 4168 Hs.387262 NM_005369 ENSG00000101977 MCF2 ARHGEF21|DBL MCF.2 cell line derived transforming sequence protein-coding 117.5-31 chr20 598738 599094 + 0.333333 NA Intergenic Intergenic 11350 NM_004609 6939 Hs.437 NM_004609 ENSG00000125878 TCF15 EC2|PARAXIS|bHLHa40 transcription factor 15 protein-coding 157.833-18 chr13 36145596 36146368 + 0.333333 NA Intergenic L2c|LINE|L2 -14043 NM_001330072 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 148.5-69 chr8 65713488 65713960 + 0.333333 NA TTS (NM_002603) TTS (NM_002603) 43851 NM_001145838 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 118.333-6 chr1 160628707 160629200 + 0.333333 NA intron (NM_001330754, intron 3 of 7) intron (NM_001330754, intron 3 of 7) 18091 NR_104401 6504 Hs.523660 NM_003037 ENSG00000117090 SLAMF1 CD150|CDw150|SLAM signaling lymphocytic activation molecule family member 1 protein-coding 152.333-49 chr5 9816553 9817077 + 0.333333 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -37562 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 122.333-124 chrX 79228725 79229368 + 0.333333 NA Intergenic L1MA2|LINE|L1 58074 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 145.833-73 chr7 18764197 18764752 + 0.333333 NA intron (NM_058176, intron 14 of 22) intron (NM_058176, intron 14 of 22) 255204 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 124.834-2 chr2 45746918 45747649 + 0.333333 NA intron (NM_005400, intron 1 of 14) L1MB2|LINE|L1 95608 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 119-5 chr1 100767547 100768088 + 0.333333 NA Intergenic L1MA5A|LINE|L1 48075 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 127-46 chr2 46997150 46997567 + 0.333333 NA intron (NM_001288951, intron 8 of 20) intron (NM_001288951, intron 8 of 20) -55503 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 147.5-4 chr1 119100823 119101552 + 0.333333 NA intron (NM_015836, intron 1 of 5) L1MA4A|LINE|L1 -39209 NR_125976 101929147 Hs.697821 NR_125974 ENSG00000231365 WARS2-AS1 - WARS2 antisense RNA 1 ncRNA 119.167-73 chr4 184131840 184132388 + 0.333333 NA intron (NM_153343, intron 2 of 7) MLT2B4|LTR|ERVL 85759 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 114.333-39 chr14 61381030 61381645 + 0.333333 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 59894 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 120.5-17 chr10 133689061 133689540 + 0.333333 NA Intergenic BSR/Beta|Satellite|Satellite -62505 NM_001080998 441581 Hs.690471 NM_001080998 ENSG00000225899 FRG2B - FSHD region gene 2 family member B protein-coding 115.333-41 chr17 40795338 40795823 + 0.333333 NA intron (NM_181535, intron 5 of 7) intron (NM_181535, intron 5 of 7) 4379 NM_181535 162605 Hs.59736 NM_181535 ENSG00000173908 KRT28 K25IRS4|KRT25D keratin 28 protein-coding 114-25 chr11 56020370 56021000 + 0.333333 NA Intergenic Intergenic -9734 NM_001001921 219447 Hs.553625 NM_001001921 ENSG00000181785 OR5AS1 OR11-168 olfactory receptor family 5 subfamily AS member 1 protein-coding 176.667-5 chr1 80559439 80560338 + 0.333333 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) 24133 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 113.333-26 chr12 17925763 17926208 + 0.333333 NA Intergenic L1PB4|LINE|L1 164208 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 149-54 chr3 72191195 72191685 + 0.333333 NA Intergenic Intergenic 40183 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 147.667-75 chr8 126402209 126403012 + 0.333333 NA Intergenic MER44A|DNA|TcMar-Tigger 77115 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 128.833-8 chr1 178751639 178752289 + 0.333333 NA intron (NM_152663, intron 1 of 19) intron (NM_152663, intron 1 of 19) 26720 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 122-48 chr3 53788825 53789368 + 0.333333 NA intron (NM_001128840, intron 40 of 47) intron (NM_001128840, intron 40 of 47) 57323 NM_018397 55349 Hs.126688 NM_018397 ENSG00000016391 CHDH - choline dehydrogenase protein-coding 141.5-54 chr20 45519551 45520151 + 0.333333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -4229 NM_006652 10816 Hs.370724 NM_006652 ENSG00000101446 SPINT3 HKIB9 serine peptidase inhibitor, Kunitz type 3 protein-coding 119.667-86 chr5 180234259 180234635 + 0.333333 NA 3' UTR (NM_001364613, exon 13 of 13) 3' UTR (NM_001364613, exon 13 of 13) -25236 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 159.833-6 chr1 107622977 107623595 + 0.333333 NA intron (NM_006113, intron 20 of 26) MIRc|SINE|MIR 65213 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 134.167-68 chr5 51208882 51209379 + 0.333333 NA Intergenic L1ME2z|LINE|L1 174202 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 125.167-82 chr8 123388734 123389450 + 0.333333 NA intron (NM_014109, intron 1 of 27) AluY|SINE|Alu 7355 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 119-2 chr1 41031744 41032235 + 0.333333 NA intron (NM_001172218, intron 14 of 15) MLT1A0|LTR|ERVL-MaLR -10234 NM_001168247 200172 Hs.194609 NM_144990 ENSG00000171790 SLFNL1 - schlafen like 1 protein-coding 144.667-84 chr6 87602066 87602807 + 0.333333 NA intron (NM_181837, intron 3 of 19) intron (NM_181837, intron 3 of 19) 12369 NM_012381 23595 Hs.410228 NM_012381 ENSG00000135336 ORC3 LAT|LATHEO|ORC3L origin recognition complex subunit 3 protein-coding 123-56 chr20 41036492 41036955 + 0.333333 NA intron (NM_003286, intron 2 of 20) intron (NM_003286, intron 2 of 20) 7901 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 122-90 chr8 132560361 132560866 + 0.333333 NA non-coding (NR_026684, exon 1 of 1) non-coding (NR_026684, exon 1 of 1) 866 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 120.333-81 chr4 32260944 32261453 + 0.333333 NA Intergenic Intergenic -89840 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 128.333-118 chr8 121310205 121310759 + 0.333333 NA Intergenic L1MA8|LINE|L1 -328864 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 144.834-5 chr6 85995127 85995942 + 0.333333 NA Intergenic HAL1|LINE|L1 -316801 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 126.167-64 chr4 60661703 60662254 + 0.333333 NA Intergenic THE1C|LTR|ERVL-MaLR -260641 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 128.167-81 chr8 52584444 52584944 + 0.333333 NA Intergenic AluJr|SINE|Alu -19264 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 123.834-7 chr6 47776159 47776870 + 0.333333 NA Intergenic Intergenic -5525 NM_181744 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 178.667-32 chr2 178886833 178887469 + 0.333333 NA intron (NM_001316745, intron 9 of 11) intron (NM_001316745, intron 9 of 11) -79728 NM_133378 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 124.167-71 chr5 52052998 52053505 + 0.333333 NA Intergenic L1MD2|LINE|L1 45220 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 123.667-105 chr8 49218401 49218862 + 0.333333 NA Intergenic Intergenic 146287 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 137.5-98 chr9 29018821 29019341 + 0.333333 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -130126 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 138.833-15 chr11 111579162 111579842 + 0.333333 NA Intergenic L1MC5|LINE|L1 -22947 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 118.5-66 chr3 71737786 71738351 + 0.333333 NA intron (NM_173359, intron 1 of 7) L1MDa|LINE|L1 -8950 NM_001134650 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 120.833-68 chr8 75857533 75857959 + 0.333333 NA Intergenic Intergenic 317778 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 117.667-73 chr20 50244307 50244860 + 0.333333 NA Intergenic Intergenic -22903 NM_001278655 100506115 Hs.235484 NM_001278655 SMIM25 GCRL1|LINC01272 small integral membrane protein 25 protein-coding 113.5-94 chr9 109978147 109978804 + 0.333333 NA intron (NM_147150, intron 6 of 9) intron (NM_147150, intron 6 of 9) -70123 NM_001004065 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 124.667-106 chr5 172036364 172036880 + 0.333333 NA Intergenic AluSq2|SINE|Alu -29749 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 177.167-21 chr20 19506927 19507710 + 0.333333 NA intron (NM_020689, intron 2 of 16) L2b|LINE|L2 -222722 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 159.5-30 chr20 35495327 35495907 + 0.333333 NA intron (NM_007186, intron 24 of 34) AluSx1|SINE|Alu 34035 NR_026933 140873 Hs.158680 NM_080828 ENSG00000125975 C20orf173 dJ477O4.4 chromosome 20 open reading frame 173 protein-coding 114.167-66 chr3 76727382 76728051 + 0.333333 NA Intergenic L1MA4A|LINE|L1 -312383 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 126.333-6 chr1 174293663 174294188 + 0.333333 NA intron (NM_001366445, intron 10 of 13) intron (NM_001366445, intron 10 of 13) 18825 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 138.667-68 chr4 80475532 80476033 + 0.333333 NA intron (NM_152770, intron 2 of 5) L2a|LINE|L2 140062 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 132.5-25 chr14 38145813 38146432 + 0.333333 NA Intergenic MamGypsy2-I|LTR|Gypsy -61782 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 134.5-8 chr1 172396588 172397233 + 0.333333 NA intron (NM_001350206, intron 20 of 20) intron (NM_001350206, intron 20 of 20) -23775 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 122.333-41 chr15 92934734 92935258 + 0.333333 NA intron (NM_001042572, intron 5 of 12) MIR3|SINE|MIR 30597 NR_036136 100422995 NR_036136 ENSG00000284324 MIR3175 mir-3175 microRNA 3175 ncRNA 117.167-86 chr7 46870547 46871072 + 0.333333 NA Intergenic MLT1D|LTR|ERVL-MaLR -173687 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 181.667-3 chr1 90070706 90071343 + 0.333333 NA Intergenic L2c|LINE|L2 75914 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 142.334-4 chr21 21588292 21589133 + 0.333333 NA Intergenic Intergenic 148607 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 136.833-37 chr22 37379542 37380190 + 0.333333 NA intron (NM_052906, intron 2 of 2) intron (NM_052906, intron 2 of 2) -25027 NR_110515 100506271 Hs.220558 NR_110515 ENSG00000237862 LOC100506271 - uncharacterized LOC100506271 ncRNA 115.333-38 chr16 8004711 8005263 + 0.333333 NA Intergenic Intergenic 584851 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 131.833-27 chr17 51221713 51222242 + 0.333333 NA intron (NM_017643, intron 3 of 16) L3|LINE|CR1 38072 NM_017643 54799 Hs.656803 NM_017643 ENSG00000011258 MBTD1 SA49P01 mbt domain containing 1 protein-coding 118.667-15 chr10 55473465 55474019 + 0.333333 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -125300 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 114-86 chr6 62264541 62265144 + 0.333333 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 21383 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 147-50 chr3 49084705 49085458 + 0.333333 NA intron (NM_001320584, intron 1 of 9) AluY|SINE|Alu 8551 NM_001320580 54870 Hs.297389 NM_017730 ENSG00000198218 QRICH1 AB-DIP|VERBRAS glutamine rich 1 protein-coding 132 chr1 30511276 30511792 + 0.333333 NA Intergenic L2c|LINE|L2 -207238 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 116.167-8 chr1 170567230 170567748 + 0.333333 NA Intergenic Intergenic -34880 NR_125958 101928650 Hs.676662 NR_125958 GORAB-AS1 - GORAB antisense RNA 1 ncRNA 123.834-8 chr6 125381382 125382101 + 0.333333 NA Intergenic MLT1F2|LTR|ERVL-MaLR -79774 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 141.167-60 chr5 112211435 112212072 + 0.333333 NA intron (NM_001347887, intron 12 of 23) Helitron3Na_Mam|RC|Helitron -16530 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 133.333-104 chr6 72874683 72875206 + 0.333333 NA intron (NM_001160132, intron 1 of 13) MARNA|DNA|TcMar-Mariner 92809 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 139.834-4 chr3 196275939 196276739 + 0.333333 NA intron (NM_001312673, intron 1 of 8) AluSx|SINE|Alu 11387 NM_005017 5130 Hs.135997 NM_005017 ENSG00000161217 PCYT1A CCTA|CT|CTA|CTPCT|PCYT1|SMDCRD phosphate cytidylyltransferase 1, choline, alpha protein-coding 124.667-52 chr18 3966200 3966629 + 0.333333 NA intron (NR_102696, intron 1 of 4) L2a|LINE|L2 4061 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 118-113 chr7 81100047 81100431 + 0.333333 NA Intergenic Intergenic -177850 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 117-89 chr5 72584200 72584630 + 0.333333 NA intron (NR_105007, intron 1 of 2) intron (NR_105007, intron 1 of 2) 27338 NR_105008 102503427 Hs.429280 NR_105008 LOC102503427 - uncharacterized LOC102503427 ncRNA 115.833-46 chr3 89931164 89931676 + 0.333333 NA Intergenic L1M4|LINE|L1 823799 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 121.667-37 chr17 58827238 58827793 + 0.333333 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 71646 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 126.167-75 chr5 131501104 131501717 + 0.333333 NA intron (NM_016340, intron 11 of 27) intron (NM_016340, intron 11 of 27) 133819 NM_001164386 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 128.167-22 chr14 37440398 37440836 + 0.333333 NA intron (NM_138731, intron 12 of 13) L1PB4|LINE|L1 154632 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 128.5-47 chr21 28688768 28689180 + 0.333333 NA Intergenic MER58A|DNA|hAT-Charlie 149656 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 129.667-34 chr14 68968419 68969030 + 0.333333 NA intron (NM_001102, intron 1 of 20) intron (NM_001102, intron 1 of 20) 10578 NM_001102 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 119.833-89 chr8 131888673 131889083 + 0.333333 NA Intergenic Intergenic -15215 NM_001323555 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 131.333-80 chr4 73386976 73387572 + 0.333333 NA Intergenic L1PA13|LINE|L1 -17013 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 128.5-77 chr7 114773185 114773630 + 0.333333 NA Intergenic Intergenic 120062 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 123.167-76 chr4 122919356 122919784 + 0.333333 NA intron (NM_198041, intron 1 of 4) L2|LINE|L2 3027 NM_007083 11162 Hs.558459 NM_007083 ENSG00000170917 NUDT6 ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1 nudix hydrolase 6 protein-coding 114-16 chr10 71366383 71366877 + 0.333333 NA Intergenic Intergenic -30290 NM_022124 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 132.167-26 chr17 33363666 33364213 + 0.333333 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -70951 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 114.167-14 chr11 25035897 25036370 + 0.333333 NA intron (NM_001009909, intron 9 of 11) L1PA16|LINE|L1 539080 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 113.667-17 chr10 42883301 42883815 + 0.333333 NA Intergenic Intergenic 12037 NR_134479 101929445 Hs.376403 NR_134479 ENSG00000234944 LINC02623 - long intergenic non-protein coding RNA 2623 ncRNA 113.167-34 chr2 23465701 23466171 + 0.333333 NA intron (NM_052920, intron 1 of 13) intron (NM_052920, intron 1 of 13) 80757 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 120-84 chr4 167723575 167724273 + 0.333333 NA Intergenic Intergenic -368613 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 118-56 chr2 108373470 108374058 + 0.333333 NA Intergenic MER11C|LTR|ERVK -4190 NR_135779 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 117.5-26 chr2 99387344 99387988 + 0.333333 NA intron (NM_015904, intron 14 of 23) L1ME1|LINE|L1 50277 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 127.167-57 chr3 102339516 102340107 + 0.333333 NA Intergenic Intergenic -95204 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 119.167-101 chrX 84636529 84637224 + 0.333333 NA Intergenic L1PB1|LINE|L1 -134423 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 127-72 chr4 6969753 6970227 + 0.333333 NA intron (NM_020773, intron 3 of 13) intron (NM_020773, intron 3 of 13) 15824 NM_001330638 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 120-61 chr2 195751316 195751843 + 0.333333 NA intron (NM_018897, intron 63 of 64) L2a|LINE|L2 94353 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 129-19 chr11 38414535 38415060 + 0.333333 NA Intergenic Intergenic 231559 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 115.5-17 chr10 76363991 76364448 + 0.333333 NA intron (NM_001305581, intron 6 of 6) L2c|LINE|L2 -523825 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 129.333-28 chr14 60079880 60080432 + 0.333333 NA Intergenic Intergenic -11755 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 126.833-40 chr20 57477445 57477825 + 0.333333 NA Intergenic AluSz|SINE|Alu 47232 NR_072975 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 119.333-41 chr18 4350926 4351370 + 0.333333 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 86546 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 117-77 chr4 41412074 41412480 + 0.333333 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) 51470 NM_001330791 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 131.5-20 chr12 40254302 40255045 + 0.333333 NA intron (NM_198578, intron 11 of 50) intron (NM_198578, intron 11 of 50) 29676 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 128.167-54 chr3 83483804 83484255 + 0.333333 NA Intergenic L1MA4|LINE|L1 1385546 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 118.5-45 chr18 8880762 8881231 + 0.333333 NA Intergenic HERVIP10FH-int|LTR|ERV1 163615 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 152.5-57 chr6 35360840 35361404 + 0.333333 NA intron (NM_001171819, intron 2 of 6) intron (NM_001171819, intron 2 of 6) 18564 NM_001171820 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 119.5-96 chr7 29235772 29236282 + 0.333333 NA intron (NM_001293072, intron 1 of 12) L1PA15|LINE|L1 -27057 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 114.5-79 chr6 53937393 53937835 + 0.333333 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) 7632 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 121.5-108 chr8 129800756 129801467 + 0.333333 NA Intergenic L1MA3|LINE|L1 -14487 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 130.333-43 chr19 28962796 28963245 + 0.333333 NA Intergenic MER21B|LTR|ERVL -2111 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 115.5-68 chr3 153764565 153765256 + 0.333333 NA Intergenic L1M6|LINE|L1 -2384 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 129-103 chr9 34261915 34262326 + 0.333333 NA intron (NM_194313, intron 9 of 12) AluJb|SINE|Alu 67148 NM_194313 347240 Hs.710246 NM_194313 ENSG00000186638 KIF24 C9orf48|bA571F15.4 kinesin family member 24 protein-coding 125-36 chr18 10049286 10049761 + 0.333333 NA Intergenic Intergenic 135507 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 143.667-23 chr11 111213638 111214134 + 0.333333 NA Intergenic L1M1|LINE|L1 -31839 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 121.167-93 chrX 102797494 102798093 + 0.333333 NA intron (NR_038988, intron 2 of 7) intron (NR_038988, intron 2 of 7) 28640 NR_038988 100287765 Hs.556850 NR_038988 LINC00630 - long intergenic non-protein coding RNA 630 ncRNA 128.833-32 chr16 80102569 80103038 + 0.333333 NA Intergenic Intergenic 307554 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 145.333-67 chr5 166235746 166236313 + 0.333333 NA Intergenic L1MB3|LINE|L1 690341 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 119.333-66 chr3 124681065 124681483 + 0.333333 NA intron (NM_007064, intron 18 of 26) intron (NM_007064, intron 18 of 26) -49092 NR_033434 7372 Hs.2057 NM_000373 ENSG00000114491 UMPS OPRT uridine monophosphate synthetase protein-coding 118.834-5 chr12 55186545 55187204 + 0.333333 NA Intergenic Intergenic -34151 NM_001005280 121364 Hs.554557 NM_001005280 ENSG00000179919 OR10A7 OR12-6 olfactory receptor family 10 subfamily A member 7 protein-coding 117.833-77 chr7 132802047 132802583 + 0.333333 NA intron (NM_001317177, intron 7 of 8) intron (NM_001317177, intron 7 of 8) 43345 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 156.333-55 chr20 49682728 49683303 + 0.333333 NA intron (NM_004776, intron 1 of 8) AluJo|SINE|Alu 30863 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 137.5-22 chr12 24670329 24670938 + 0.333333 NA Intergenic L1MEb|LINE|L1 -86465 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 173.5-36 chr3 85793449 85794439 + 0.333333 NA intron (NM_001256504, intron 3 of 10) intron (NM_001256504, intron 3 of 10) 34106 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 180.5-49 chr8 103369628 103370464 + 0.333333 NA Intergenic Intergenic -1492 NM_138455 115908 Hs.405614 NM_138455 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 125.333-114 chr7 85629893 85630299 + 0.333333 NA Intergenic AluSx1|SINE|Alu 208974 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 177.5-12 chr10 51489326 51490041 + 0.333333 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 190110 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 121.833 chr1 51076148 51076574 + 0.333333 NA Intergenic Intergenic 16343 NR_106754 102466656 NR_106754 ENSG00000275816 MIR6500 hsa-mir-6500 microRNA 6500 ncRNA 141.167-13 chr10 81818277 81818949 + 0.333333 NA Intergenic Intergenic -56581 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 117.834-4 chr22 38709538 38710178 + 0.333333 NA intron (NM_004286, intron 2 of 11) intron (NM_004286, intron 2 of 11) 3914 NM_004286 9567 Hs.276925 NM_004286 ENSG00000100226 GTPBP1 GP-1|GP1|HSPC018 GTP binding protein 1 protein-coding 114.833-34 chr2 107927329 107927830 + 0.333333 NA Intergenic Intergenic -58945 NM_021815 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 121.833-38 chr20 13313914 13314392 + 0.333333 NA Intergenic L1MC1|LINE|L1 -74466 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 124.333-97 chr8 14174831 14175360 + 0.333333 NA intron (NM_139167, intron 4 of 7) MLT1B|LTR|ERVL-MaLR 545405 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 129-20 chr11 39832982 39833576 + 0.333333 NA Intergenic Intergenic 459851 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 129.833-65 chr7 66223132 66223810 + 0.333333 NA intron (NM_003596, intron 1 of 5) AluJr|SINE|Alu 18137 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 145-24 chr13 30270744 30271321 + 0.333333 NA intron (NM_032116, intron 3 of 10) L2a|LINE|L2 35979 NM_001014380 84056 Hs.243596 NM_032116 ENSG00000102781 KATNAL1 - katanin catalytic subunit A1 like 1 protein-coding 124.667-107 chr6 19710142 19710694 + 0.333333 NA Intergenic Intergenic 94341 NR_134651 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 141-46 chr2 158780984 158781515 + 0.333333 NA Intergenic Intergenic -14068 NM_001017920 92196 Hs.59761 NM_001017920 ENSG00000163331 DAPL1 - death associated protein like 1 protein-coding 132.5-62 chr4 4531356 4532000 + 0.333333 NA intron (NM_001346282, intron 1 of 10) intron (NM_001346282, intron 1 of 10) 10370 NR_144414 53407 Hs.584913 NM_016930 ENSG00000168818 STX18 Ufe1 syntaxin 18 protein-coding 151.667-44 chr2 125448344 125448846 + 0.333333 NA Intergenic L1M4|LINE|L1 669390 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 116.5 chr1 71798566 71799162 + 0.333333 NA intron (NR_046218, intron 1 of 2) intron (NR_046218, intron 1 of 2) 38148 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 117.333-91 chr5 143418484 143419025 + 0.333333 NA intron (NM_001018075, intron 1 of 8) L2c|LINE|L2 -13399 NM_001364180 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 113.667-111 chr6 83554559 83555146 + 0.333333 NA intron (NM_001242792, intron 28 of 28) intron (NM_001242792, intron 28 of 28) 42318 NM_001170423 167681 Hs.98381 NM_153362 ENSG00000146250 PRSS35 C6orf158|dJ223E3.1 serine protease 35 protein-coding 124.5-60 chr5 67276089 67276612 + 0.333333 NA Intergenic L1ME1|LINE|L1 -79551 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 130.667-7 chr10 30438547 30439075 + 0.333333 NA intron (NM_005204, intron 2 of 8) intron (NM_005204, intron 2 of 8) 4165 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 174.5-47 chr7 30782755 30783505 + 0.333333 NA intron (NR_037598, intron 5 of 19) MLT1D|LTR|ERVL-MaLR 11713 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 122.667-61 chr3 29145974 29146468 + 0.333333 NA Intergenic AluSx|SINE|Alu 134718 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 115.167-10 chr1 150690943 150691501 + 0.333333 NA intron (NM_018178, intron 2 of 4) Alu|SINE|Alu 5932 NM_018178 55204 Hs.203699 NM_018178 ENSG00000143457 GOLPH3L GPP34R golgi phosphoprotein 3 like protein-coding 137.5-21 chr11 66802253 66802978 + 0.333333 NA intron (NM_024650, intron 8 of 16) intron (NM_024650, intron 8 of 16) -40826 NM_005133 9986 Hs.654972 NM_005133 ENSG00000173653 RCE1 FACE2|RCE1A|RCE1B Ras converting CAAX endopeptidase 1 protein-coding 148.334-8 chr6 8643956 8644753 + 0.333333 NA intron (NR_038980, intron 3 of 4) LTR12D|LTR|ERV1 -7855 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 138-90 chr6 44042732 44043248 + 0.333333 NA intron (NR_125864, intron 1 of 4) intron (NR_125864, intron 1 of 4) 31662 NR_125864 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 163.5-4 chr1 96635706 96636579 + 0.333333 NA Intergenic Intergenic -85463 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 147.667-74 chr8 107969925 107970404 + 0.333333 NA intron (NM_001282863, intron 2 of 4) MER58B|DNA|hAT-Charlie 111775 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 121.333-98 chr6 158377425 158378046 + 0.333333 NA intron (NM_020245, intron 1 of 13) L2c|LINE|L2 54753 NR_145798 109623462 NR_145798 SNORA116 - small nucleolar RNA, H/ACA box 116 snoRNA 133.167-25 chr16 80547656 80548226 + 0.333333 NA intron (NR_130943, intron 3 of 4) intron (NR_130943, intron 3 of 4) 6948 NR_130943 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 136.833-61 chr6 3706476 3706976 + 0.333333 NA Intergenic L1MB3|LINE|L1 45286 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 124-9 chr1 218469057 218469597 + 0.333333 NA intron (NR_031644, intron 2 of 6) AluJr4|SINE|Alu 26701 NR_125715 103611157 Hs.133379 NR_125715 ENSG00000281453 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 120.333-38 chr13 35018662 35019155 + 0.333333 NA intron (NM_015678, intron 1 of 57) L1MEc|LINE|L1 76621 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 139.5-78 chr9 27114710 27115198 + 0.333333 NA intron (NM_001290078, intron 1 of 20) L2a|LINE|L2 5813 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 135.333-30 chr17 49018696 49019216 + 0.333333 NA intron (NM_001160423, intron 2 of 12) intron (NM_001160423, intron 2 of 12) 21571 NM_001160423 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 139.833-72 chr8 24639930 24640555 + 0.333333 NA Intergenic Intergenic -91624 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 137-66 chr22 43069583 43070290 + 0.333333 NA intron (NM_012263, intron 3 of 10) intron (NM_012263, intron 3 of 10) 19455 NM_012263 25809 Hs.660298 NM_012263 ENSG00000100271 TTLL1 C22orf7|HS323M22B tubulin tyrosine ligase like 1 protein-coding 134.167-55 chr3 54056479 54057049 + 0.333333 NA Intergenic Intergenic -65788 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 142.167-65 chr5 140570621 140571314 + 0.333333 NA Intergenic L2b|LINE|L2 -6363 NM_133174 10307 Hs.529449 NM_006051 ENSG00000113108 APBB3 FE65L2|SRA amyloid beta precursor protein binding family B member 3 protein-coding 150.667-62 chr3 10476786 10477338 + 0.333333 NA intron (NM_001353564, intron 2 of 20) intron (NM_001353564, intron 2 of 20) 28522 NM_001363862 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 143.667-62 chr2 177639234 177639987 + 0.333333 NA intron (NM_001077197, intron 20 of 20) intron (NM_001077197, intron 20 of 20) -20868 NM_152275 92104 Hs.128384 NM_152275 ENSG00000197557 TTC30A IFT70A|TTC30B tetratricopeptide repeat domain 30A protein-coding 119.167-26 chr15 72290525 72290972 + 0.333333 NA intron (NM_052840, intron 3 of 12) intron (NM_052840, intron 3 of 12) 15567 NM_001172685 60677 Hs.348342 NM_052840 ENSG00000140488 CELF6 BRUNOL6 CUGBP Elav-like family member 6 protein-coding 182.833-32 chr21 35477020 35477705 + 0.333333 NA intron (NR_073512, intron 1 of 2) intron (NR_073512, intron 1 of 2) 103402 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 122-5 chr1 192745470 192745930 + 0.333333 NA Intergenic Intergenic 29372 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 134.334 chr1 205051424 205052129 + 0.333333 NA intron (NR_144350, intron 1 of 22) intron (NR_144350, intron 1 of 22) 8564 NR_144350 6900 Hs.519220 NM_005076 ENSG00000184144 CNTN2 AXT|FAME5|TAG-1|TAX|TAX1 contactin 2 protein-coding 133.5-85 chr9 37722219 37722729 + 0.333333 NA intron (NM_001371225, intron 6 of 15) AluSx4|SINE|Alu -31329 NM_001286950 158234 Hs.655614 NM_144964 ENSG00000165275 TRMT10B RG9MTD3|bA3J10.9 tRNA methyltransferase 10B protein-coding 118.334-3 chr15 64441446 64442121 + 0.333333 NA intron (NM_001321924, intron 11 of 12) L2a|LINE|L2 53947 NM_016213 9325 Hs.500340 NM_016213 ENSG00000103671 TRIP4 ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5 thyroid hormone receptor interactor 4 protein-coding 174.167-18 chr2 29856493 29857108 + 0.333333 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 64786 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 129-38 chr2 5715665 5716235 + 0.333333 NA Intergenic Intergenic 23566 NM_003108 6664 Hs.432638 NM_003108 ENSG00000176887 SOX11 MRD27 SRY-box transcription factor 11 protein-coding 123-74 chr5 54998255 54998709 + 0.333333 NA Intergenic AluJb|SINE|Alu -12889 NM_001135604 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 153.334-2 chr10 26520050 26520886 + 0.333333 NA intron (NM_019043, intron 8 of 14) intron (NM_019043, intron 8 of 14) 58839 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 123.833-74 chr9 75947459 75948052 + 0.333333 NA intron (NR_120409, intron 2 of 19) intron (NR_120409, intron 2 of 19) 57082 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 124.5-43 chr3 14529745 14530478 + 0.333333 NA intron (NM_001080423, intron 1 of 23) L1MEd|LINE|L1 10231 NM_001080423 80852 Hs.517819 NM_001080423 ENSG00000144596 GRIP2 - glutamate receptor interacting protein 2 protein-coding 127.5-64 chr6 153346295 153346791 + 0.333333 NA Intergenic Intergenic -215261 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 142-41 chr2 25855141 25855833 + 0.333333 NA intron (NM_018263, intron 1 of 11) AluSx|SINE|Alu 23000 NM_018263 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 118.5-79 chr5 11645503 11646066 + 0.333333 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -56718 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 128.667-65 chr2 134263826 134264303 + 0.333333 NA intron (NM_001371457, intron 2 of 16) AluSp|SINE|Alu 9992 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 117.667-37 chr12 127727324 127727800 + 0.333333 NA Intergenic MLT1H|LTR|ERVL-MaLR -71974 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 123-82 chr7 32316774 32317440 + 0.333333 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) -17779 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 129-73 chr5 106753712 106754293 + 0.333333 NA Intergenic Intergenic 257012 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 120.833 chr1 159090256 159090787 + 0.333333 NA Intergenic Intergenic -13620 NM_001348247 9447 Hs.733411 NM_004833 ENSG00000163568 AIM2 PYHIN4 absent in melanoma 2 protein-coding 121.833-54 chr4 117465234 117465740 + 0.333333 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 37089 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 115.167-71 chr3 171726165 171726649 + 0.333333 NA intron (NM_002662, intron 6 of 26) intron (NM_002662, intron 6 of 26) 84076 NM_001130081 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 119.5-56 chr20 46018991 46019476 + 0.333333 NA intron (NR_147699, intron 2 of 2) LFSINE_Vert|SINE|tRNA -2453 NM_001134771 57468 Hs.21413 NM_020708 ENSG00000124140 SLC12A5 EIEE34|EIG14|KCC2|hKCC2 solute carrier family 12 member 5 protein-coding 145.833-17 chr11 75174290 75174842 + 0.333333 NA intron (NM_007256, intron 7 of 13) intron (NM_007256, intron 7 of 13) 14734 NM_001145211 11309 Hs.7884 NM_007256 ENSG00000137491 SLCO2B1 OATP-B|OATP2B1|OATPB|SLC21A9 solute carrier organic anion transporter family member 2B1 protein-coding 128.834-3 chr11 111320152 111320854 + 0.333333 NA Intergenic MER41A|LTR|ERV1 -15455 NM_001302644 399948 Hs.729225 NM_207429 COLCA1 C11orf92|CASC12|LOH11CR1F colorectal cancer associated 1 protein-coding 116.667-108 chr8 58369045 58369621 + 0.333333 NA Intergenic Intergenic -41931 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 121.834 chr11 34580038 34580699 + 0.333333 NA Intergenic MIRb|SINE|MIR -40725 NM_001206615 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 145.167-69 chr7 40794168 40794752 + 0.333333 NA intron (NM_024728, intron 14 of 14) L1MEd|LINE|L1 185479 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 142.667-20 chr12 20967665 20968229 + 0.333333 NA intron (NM_001371097, intron 13 of 15) LTR57-int|LTR|ERVL -47749 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 131.5-44 chr20 44419942 44420453 + 0.333333 NA intron (NM_001287183, intron 8 of 10) AluSx|SINE|Alu 12077 NR_037419 100500813 NR_037419 ENSG00000266151 MIR3646 - microRNA 3646 ncRNA 117.833-27 chr14 47460220 47460607 + 0.333333 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -117167 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 136-10 chr10 62558069 62558666 + 0.333333 NA intron (NM_199452, intron 1 of 6) MLT1A0|LTR|ERVL-MaLR 37919 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 157.834-4 chr18 13716240 13717174 + 0.333333 NA intron (NM_001098801, intron 1 of 4) THE1D|LTR|ERVL-MaLR 9851 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 135.167-4 chr1 56211513 56212089 + 0.333333 NA Intergenic Intergenic -203162 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 147.167-61 chr8 103294415 103295164 + 0.333333 NA intron (NR_148215, intron 1 of 3) Zaphod|DNA|hAT-Tip100 -3705 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 113.167-20 chr15 33441963 33442579 + 0.333333 NA intron (NM_001243996, intron 1 of 102) intron (NM_001243996, intron 1 of 102) 131304 NM_001036 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 132-102 chr9 116436143 116436870 + 0.333333 NA intron (NM_014010, intron 21 of 21) L2c|LINE|L2 -35900 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 120.5-65 chr4 37937577 37938007 + 0.333333 NA intron (NM_001253912, intron 2 of 20) intron (NM_001253912, intron 2 of 20) -22606 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 115.333-77 chr4 101896609 101896985 + 0.333333 NA intron (NM_017935, intron 6 of 16) intron (NM_017935, intron 6 of 16) 82955 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 136.667-47 chr2 146517149 146517599 + 0.333333 NA Intergenic Intergenic -69683 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 134.167-12 chr10 85668882 85669429 + 0.333333 NA intron (NM_017551, intron 12 of 15) intron (NM_017551, intron 12 of 15) 91424 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 163.5-26 chr16 81773158 81774081 + 0.333333 NA Intergenic Intergenic -5672 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 120.333-3 chr1 37585450 37585955 + 0.333333 NA intron (NM_001323624, intron 4 of 14) intron (NM_001323624, intron 4 of 14) 10235 NM_013285 29889 Hs.75528 NM_013285 ENSG00000134697 GNL2 HUMAUANTIG|NGP1|Ngp-1|Nog2|Nug2 G protein nucleolar 2 protein-coding 172.833-54 chr8 126105546 126106375 + 0.333333 NA Intergenic Intergenic -154763 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 114.667-79 chr3 97339030 97339643 + 0.333333 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -100271 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 118.167-12 chr12 34497245 34497747 + 0.333333 NA Intergenic ALR/Alpha|Satellite|centr 475000 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 142.167-59 chr4 114584608 114585267 + 0.333333 NA Intergenic A-rich|Low_complexity|Low_complexity -13465 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 122.833-63 chr4 46518278 46518689 + 0.333333 NA Intergenic MLT2A2|LTR|ERVL -128355 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 114-73 chr4 30873712 30874083 + 0.333333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 153528 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 151.5-20 chr12 111645575 111646051 + 0.333333 NA intron (NM_006768, intron 11 of 11) AluJo|SINE|Alu 40143 NM_006768 8315 Hs.530940 NM_006768 ENSG00000089234 BRAP BRAP2|IMP|RNF52 BRCA1 associated protein protein-coding 114-87 chr6 75039932 75040605 + 0.333333 NA Intergenic L1MB1|LINE|L1 88514 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 130.667-25 chr14 34327747 34328225 + 0.333333 NA Intergenic Intergenic 134254 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 139.333-26 chr12 64239061 64239761 + 0.333333 NA Intergenic AluJb|SINE|Alu -17115 NM_152440 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 137-52 chr2 24696411 24697108 + 0.333333 NA intron (NM_001362950, intron 10 of 23) L1M5|LINE|L1 -96356 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 126-87 chr7 44951101 44951505 + 0.333333 NA Intergenic AluSx1|SINE|Alu 27712 NM_033054 64005 Hs.37617 NM_033054 ENSG00000136286 MYO1G HA2|HLA-HA2|MHAG myosin IG protein-coding 130.667-56 chr3 166145778 166146357 + 0.333333 NA Intergenic Intergenic -308644 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 116.667-60 chr2 184809331 184809758 + 0.333333 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 211015 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 115.333-106 chr8 110972466 110972991 + 0.333333 NA intron (NR_125417, intron 5 of 5) intron (NR_125417, intron 5 of 5) 54705 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 127.5-19 chr12 39993344 39993846 + 0.333333 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 112486 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 128.667-108 chr8 100369660 100370123 + 0.333333 NA Intergenic Intergenic -12872 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 129.167-5 chr1 211878657 211879342 + 0.333333 NA Intergenic Intergenic 48038 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 115.834-7 chr6 117066659 117067345 + 0.333333 NA Intergenic Intergenic 189760 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 134.834-3 chr3 102201250 102201989 + 0.333333 NA Intergenic MIR|SINE|MIR 37914 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 138.333-91 chr5 161929413 161929828 + 0.333333 NA intron (NR_126372, intron 1 of 2) L1MA9|LINE|L1 71576 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 117.667-46 chr16 10170471 10170825 + 0.333333 NA intron (NM_001134408, intron 2 of 13) AluJr|SINE|Alu 11419 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 140.333-79 chr7 53365326 53365838 + 0.333333 NA Intergenic Intergenic 329949 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 119.833-20 chr10 105094298 105094925 + 0.333333 NA intron (NM_014978, intron 6 of 26) L2c|LINE|L2 -428395 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 113.5-27 chr12 51694834 51695360 + 0.333333 NA intron (NM_001369788, intron 6 of 25) (TTTCTT)n|Simple_repeat|Simple_repeat 103861 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 167-24 chr14 66462493 66463318 + 0.333333 NA Intergenic AluY|SINE|Alu -23466 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 135.5-9 chr10 16058914 16059638 + 0.333333 NA Intergenic Intergenic -198743 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 131.834-4 chr20 47488127 47488911 + 0.333333 NA Intergenic AluSq2|SINE|Alu -13368 NM_001174088 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 113.833-58 chr3 120971544 120972099 + 0.333333 NA intron (NR_145517, intron 3 of 8) intron (NR_145517, intron 3 of 8) 63144 NM_001348343 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5 like protein-coding 119.834-3 chr5 45029427 45030073 + 0.333333 NA Intergenic Tigger1|DNA|TcMar-Tigger 220803 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 133.333-97 chr5 40192894 40193498 + 0.333333 NA Intergenic Intergenic 140905 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 115.833-7 chr10 55318969 55319410 + 0.333333 NA intron (NM_001354404, intron 2 of 34) L1MEd|LINE|L1 -279853 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 134.667-13 chr10 76040980 76041471 + 0.333333 NA intron (NM_001305581, intron 3 of 6) intron (NM_001305581, intron 3 of 6) 258464 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 140.834-3 chr20 54081115 54081877 + 0.333333 NA Intergenic Charlie8|DNA|hAT-Charlie -10731 NM_003657 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 115.833-25 chr15 94574371 94574778 + 0.333333 NA Intergenic Intergenic 218644 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 133.667-87 chr7 24750087 24750765 + 0.333333 NA intron (NM_004403, intron 1 of 9) AluJr|SINE|Alu 7038 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 119.667-98 chr8 76969056 76969520 + 0.333333 NA Intergenic L2b|LINE|L2 -2438 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 120.333-34 chr12 63138194 63138579 + 0.333333 NA Intergenic L1MC3|LINE|L1 14424 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 126.5-5 chr10 50291386 50291833 + 0.333333 NA Intergenic Intergenic -42999 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 159.5-47 chr7 41654722 41655252 + 0.333333 NA Intergenic Intergenic -38932 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 167-21 chr13 34856976 34857595 + 0.333333 NA Intergenic MIRc|SINE|MIR -85002 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 119.667-80 chr5 75087727 75088285 + 0.333333 NA intron (NM_001164443, intron 22 of 24) intron (NM_001164443, intron 22 of 24) -35448 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 132.5-96 chr8 82983412 82983888 + 0.333333 NA Intergenic Intergenic 71546 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 119.167-67 chr3 195592820 195593272 + 0.333333 NA Intergenic Intergenic -9106 NM_001647 347 Hs.522555 NM_001647 ENSG00000189058 APOD - apolipoprotein D protein-coding 120.834-3 chr17 67446934 67447594 + 0.333333 NA intron (NM_181671, intron 1 of 9) LTR32|LTR|ERVL -24225 NR_037517 100500895 NR_037517 ENSG00000207688 MIR548AA2 - microRNA 548aa-2 ncRNA 127.167-68 chr4 101256637 101257176 + 0.333333 NA intron (NM_001130691, intron 1 of 12) MIRb|SINE|MIR -16034 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 130.333-8 chr1 240640663 240641205 + 0.333333 NA Intergenic AluSp|SINE|Alu -28779 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 131.667-83 chr3 115174433 115175043 + 0.333333 NA Intergenic L1MC1|LINE|L1 -27450 NM_001348800 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 113.667-78 chr3 18016358 18016886 + 0.333333 NA non-coding (NR_161333, exon 3 of 5) non-coding (NR_161333, exon 3 of 5) 54070 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 138.833-42 chr2 178783841 178784328 + 0.333333 NA exon (NM_133432, exon 15 of 192) exon (NM_133432, exon 15 of 192) 7158 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 134.667-106 chr8 80570362 80571149 + 0.333333 NA Intergenic (TTTTGTA)n|Simple_repeat|Simple_repeat 84529 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 141.167-37 chr2 33089193 33089643 + 0.333333 NA intron (NM_206943, intron 3 of 33) MER20|DNA|hAT-Charlie -45179 NM_001166264 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 114.167-88 chr7 31190698 31191096 + 0.333333 NA Intergenic Intergenic 138436 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 157.667-15 chr11 100546527 100547275 + 0.333333 NA Intergenic MER91B|DNA|hAT-Tip100 -140387 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 123.167-41 chr19 15851966 15852414 + 0.333333 NA exon (NM_001302493, exon 3 of 3) exon (NM_001302493, exon 3 of 3) 12734 NM_001302493 102724279 Hs.164360 NM_001302493 LINC01835 - long intergenic non-protein coding RNA 1835 protein-coding 120-97 chr6 53578479 53579165 + 0.333333 NA Intergenic L1ME1|LINE|L1 -5547 NR_110840 101927136 Hs.509788 NR_110840 ENSG00000231683 LOC101927136 - uncharacterized LOC101927136 ncRNA 177-25 chr17 73515235 73516068 + 0.333333 NA intron (NR_135635, intron 1 of 1) intron (NR_135635, intron 1 of 1) 1968 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 114.833-58 chr6 45743450 45743941 + 0.333333 NA Intergenic Intergenic 193902 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 129.667-15 chr11 85571085 85571719 + 0.333333 NA intron (NM_001142699, intron 3 of 27) L1MB7|LINE|L1 55868 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 136.833-53 chr5 11356119 11356565 + 0.333333 NA intron (NM_001288715, intron 7 of 20) L1MA6|LINE|L1 232575 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 150.167-4 chr1 95568846 95569575 + 0.333333 NA Intergenic Intergenic 59094 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 117.834 chr11 119855604 119856266 + 0.333333 NA Intergenic MLT1F|LTR|ERVL-MaLR 126352 NR_120587 102724301 Hs.637640 NR_120587 ENSG00000254854 LOC102724301 - uncharacterized LOC102724301 ncRNA 131.167-85 chr9 102542486 102543057 + 0.333333 NA intron (NR_103830, intron 1 of 4) ERVL-int|LTR|ERVL 23134 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 130.667-31 chr15 78197363 78198043 + 0.333333 NA intron (NM_015162, intron 2 of 13) AluSz6|SINE|Alu 36862 NM_001199377 23205 Hs.655760 NM_015162 ENSG00000103740 ACSBG1 BG|BG1|BGM|GR-LACS|LPD acyl-CoA synthetase bubblegum family member 1 protein-coding 135-27 chr17 20642293 20642829 + 0.333333 NA Intergenic Intergenic -9310 NR_146887 105371582 Hs.579165 NR_146887 ENSG00000227685 LINC02088 - long intergenic non-protein coding RNA 2088 ncRNA 146.667-65 chr4 48605859 48606651 + 0.333333 NA intron (NM_015030, intron 10 of 63) AluSx1|SINE|Alu 116003 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 146.167-26 chr16 86306327 86306925 + 0.333333 NA Intergenic Intergenic 20195 NR_038438 146513 Hs.434338 NR_038438 ENSG00000268532 LINC02135 - long intergenic non-protein coding RNA 2135 ncRNA 130.834-6 chr6 159616943 159617635 + 0.333333 NA Intergenic LTR41B|LTR|ERVL 75952 NM_001024465 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 132.334-6 chr2 181569089 181569800 + 0.333333 NA intron (NM_001160277, intron 2 of 12) intron (NM_001160277, intron 2 of 12) 87661 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 123-35 chr18 2042892 2043609 + 0.333333 NA Intergenic Intergenic 528255 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 147-44 chr2 238581038 238581854 + 0.333333 NA Intergenic Intergenic -25947 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 130.834-7 chr8 54821912 54822673 + 0.333333 NA Intergenic Intergenic 206196 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 119.833-4 chr1 65758574 65758947 + 0.333333 NA Intergenic MER49|LTR|ERV1 -33750 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 215-14 chr18 475819 476549 + 0.333333 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 24517 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 141.667-16 chr12 23665871 23666305 + 0.333333 NA intron (NM_152989, intron 9 of 17) MIR3|SINE|MIR -81502 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 113.167-83 chr9 111774024 111774638 + 0.333333 NA intron (NM_173521, intron 3 of 25) AluJr|SINE|Alu 9162 NM_173521 158401 Hs.428209 NM_173521 ENSG00000165181 SHOC1 C9orf84|ZIP2|ZIP2H shortage in chiasmata 1 protein-coding 155.834 chr12 17987940 17988745 + 0.333333 NA Intergenic Intergenic 101851 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 133.333-92 chr4 159027947 159028645 + 0.333333 NA intron (NM_152543, intron 1 of 4) intron (NM_152543, intron 1 of 4) 6933 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 137.167-10 chr11 18784750 18785236 + 0.333333 NA intron (NM_006906, intron 1 of 14) AluSz|SINE|Alu 6805 NM_001278238 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 128.833-69 chr5 54940129 54940708 + 0.333333 NA Intergenic AluJb|SINE|Alu 45175 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 244.833-7 chr2 46671219 46672210 + 0.333333 NA Intergenic Intergenic -27246 NM_014011 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 138.667-89 chr7 7781682 7782330 + 0.333333 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -63399 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 187.167-37 chr7 82863464 82864292 + 0.333333 NA intron (NM_033026, intron 10 of 24) intron (NM_033026, intron 10 of 24) 299006 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 162-25 chr16 7397686 7398354 + 0.333333 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 65175 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 130-105 chr9 35736690 35737329 + 0.333333 NA TTS (NM_006368) TTS (NM_006368) 4087 NR_106912 102466201 NR_106912 ENSG00000273945 MIR6853 hsa-mir-6853 microRNA 6853 ncRNA 119-29 chr13 49511738 49512361 + 0.333333 NA intron (NM_001040444, intron 2 of 9) L1ME2|LINE|L1 14993 NM_001040444 51131 Hs.369039 NM_001040443 ENSG00000136147 PHF11 APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34 PHD finger protein 11 protein-coding 144-59 chr5 37169840 37170553 + 0.333333 NA exon (NM_023073, exon 33 of 52) exon (NM_023073, exon 33 of 52) -78850 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 115.667-30 chr13 76583270 76583764 + 0.333333 NA Intergenic AluSz6|SINE|Alu 302888 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 128.5-64 chr6 13092728 13093303 + 0.333333 NA intron (NM_001322308, intron 4 of 13) intron (NM_001322308, intron 4 of 13) 79461 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 118.167-8 chr10 84399828 84400290 + 0.333333 NA intron (NM_018999, intron 3 of 10) L1MC4a|LINE|L1 -24880 NM_001284243 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 123.167-54 chr20 36420039 36420544 + 0.333333 NA intron (NM_001365621, intron 2 of 12) L2b|LINE|L2 -41177 NM_001042486 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 117.667-18 chr10 73164441 73164965 + 0.333333 NA intron (NM_007265, intron 1 of 13) AluJb|SINE|Alu 3305 NM_007265 11319 Hs.631822 NM_007265 ENSG00000122882 ECD GCR2|HSGT1|SGT1 ecdysoneless cell cycle regulator protein-coding 161.667-2 chr1 84635729 84636482 + 0.333333 NA Intergenic Intergenic -1085 NR_027379 439927 Hs.407054 NM_001033660 ENSG00000180869 LINC01555 C1orf180 long intergenic non-protein coding RNA 1555 ncRNA 127-16 chr11 91563910 91564426 + 0.333333 NA Intergenic L1MDa|LINE|L1 -660866 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 117.5-33 chr20 25466296 25466941 + 0.333333 NA intron (NM_025176, intron 19 of 23) AluSz|SINE|Alu 58935 NR_134574 9837 Hs.658464 NM_021067 ENSG00000101003 GINS1 IMD55|PSF1 GINS complex subunit 1 protein-coding 156.5-48 chr2 114248998 114249685 + 0.333333 NA Intergenic Intergenic -193300 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 115.833-42 chr20 57637402 57637998 + 0.333333 NA Intergenic L1MC3|LINE|L1 -17274 NR_136660 81030 Hs.302123 NM_030776 ENSG00000124256 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 142.833-71 chr7 66640381 66641113 + 0.333333 NA 3' UTR (NM_153033, exon 4 of 4) 3' UTR (NM_153033, exon 4 of 4) 11866 NM_153033 154881 Hs.546627 NM_153033 ENSG00000243335 KCTD7 CLN14|EPM3 potassium channel tetramerization domain containing 7 protein-coding 119.833-22 chr11 84402998 84403507 + 0.333333 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -85913 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 122.333-73 chr3 148832426 148832944 + 0.333333 NA intron (NM_001871, intron 2 of 10) LTR16C|LTR|ERVL 4874 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 154.333-6 chr10 35383147 35383879 + 0.333333 NA intron (NM_001282852, intron 1 of 8) AluSx1|SINE|Alu 46639 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 115.167-119 chrX 139057357 139057998 + 0.333333 NA intron (NM_001139501, intron 2 of 7) L1MB7|LINE|L1 147346 NM_001139498 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 119.334 chr1 186058419 186059089 + 0.333333 NA intron (NM_031935, intron 46 of 106) L3|LINE|CR1 -237519 NM_001127708 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 123-90 chr9 93272055 93272573 + 0.333333 NA intron (NM_001282394, intron 19 of 29) L1ME1|LINE|L1 73989 NM_001368813 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 125.167-88 chr9 74136167 74136635 + 0.333333 NA Intergenic L1MD2|LINE|L1 -235130 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 144-44 chr22 26807482 26808025 + 0.333333 NA Intergenic Intergenic -52458 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 126.334-10 chr9 27765911 27766586 + 0.333333 NA Intergenic Intergenic -192382 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 116-13 chr11 93100695 93101271 + 0.333333 NA Intergenic MamRep1879|DNA|hAT-Tip100? 96443 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 121.5-6 chr1 168806159 168806590 + 0.333333 NA Intergenic L2a|LINE|L2 19433 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 121.333-96 chr6 83593189 83593669 + 0.333333 NA intron (NM_001242792, intron 17 of 28) intron (NM_001242792, intron 17 of 28) 80895 NM_001170423 167681 Hs.98381 NM_153362 ENSG00000146250 PRSS35 C6orf158|dJ223E3.1 serine protease 35 protein-coding 160.334 chr13 91620804 91621712 + 0.333333 NA intron (NM_004466, intron 2 of 7) intron (NM_004466, intron 2 of 7) 222637 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 143.5-88 chr8 108602781 108603379 + 0.333333 NA Intergenic L1MA9|LINE|L1 159456 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 115.333-86 chr5 149754410 149754961 + 0.333333 NA intron (NM_001172698, intron 1 of 10) intron (NM_001172698, intron 1 of 10) -17255 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 122.833-30 chr15 24082589 24083108 + 0.333333 NA intron (NR_126392, intron 4 of 5) MSTC|LTR|ERVL-MaLR 87100 NR_152824 791115 Hs.560378 NR_026647 ENSG00000260551 PWRN2 NCRNA00199 Prader-Willi region non-protein coding RNA 2 ncRNA 164.167-42 chr20 57103172 57103742 + 0.333333 NA Intergenic Intergenic -110239 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 140.333-4 chr1 119533196 119533833 + 0.333333 NA Intergenic LTR105_Mam|LTR|ERVL 26304 NM_000862 3283 Hs.364941 NM_000862 ENSG00000203857 HSD3B1 3BETAHSD|HSD3B|HSDB3|HSDB3A|SDR11E1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 protein-coding 116.167-80 chr8 121451113 121451516 + 0.333333 NA Intergenic Intergenic -188032 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 131-70 chr8 13974700 13975214 + 0.333333 NA Intergenic MLT1B|LTR|ERVL-MaLR 345267 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 172.667-73 chr7 28441834 28442685 + 0.333333 NA intron (NM_004904, intron 1 of 10) L1MA5|LINE|L1 6644 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 162.5-28 chr2 30066514 30067393 + 0.333333 NA Intergenic FLAM_C|SINE|Alu -80054 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 126.167-74 chr5 87532474 87533034 + 0.333333 NA Intergenic Intergenic -119721 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 148.333-93 chr7 89239064 89239566 + 0.333333 NA intron (NM_181646, intron 2 of 3) intron (NM_181646, intron 2 of 3) -443578 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 152.833-38 chr2 208495050 208495762 + 0.333333 NA TTS (NM_001309516) TTS (NM_001309516) -47236 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 117-78 chr4 48969946 48970626 + 0.333333 NA Intergenic MLT1K|LTR|ERVL-MaLR -15989 NM_025087 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 119.333-33 chr16 29642734 29643154 + 0.333333 NA Intergenic AluY|SINE|Alu -20006 NM_001030288 6693 Hs.632188 NM_003123 ENSG00000197471 SPN CD43|GALGP|GPL115|LSN sialophorin protein-coding 159.167-55 chr5 164981364 164982149 + 0.333333 NA Intergenic Intergenic 511477 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 133.667-89 chr7 40827796 40828355 + 0.333333 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 151864 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 163.833-42 chr4 69626824 69627377 + 0.333333 NA intron (NM_001301239, intron 1 of 4) L1MC4a|LINE|L1 12542 NM_001301233 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 113.167-10 chr10 90797762 90798328 + 0.333333 NA intron (NM_019860, intron 1 of 2) MSTD|LTR|ERVL-MaLR 59994 NM_000872 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 118.833-14 chr11 133769400 133769910 + 0.333333 NA Intergenic L1MD1|LINE|L1 40721 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 160.5-45 chr5 33341246 33341874 + 0.333333 NA Intergenic Intergenic -99136 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 133.5-58 chr5 92555991 92556705 + 0.333333 NA Intergenic MSTA|LTR|ERVL-MaLR 1014995 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 118.833-75 chr9 72144374 72144885 + 0.333333 NA intron (NM_001242507, intron 1 of 13) intron (NM_001242507, intron 1 of 13) -4722 NM_001242505 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 122.5-39 chr16 34585642 34586079 + 0.333333 NA Intergenic Intergenic -204380 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 115.667-114 chr7 146222091 146222699 + 0.333333 NA Intergenic L2c|LINE|L2 -551876 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 126.333-90 chr6 18948222 18948836 + 0.333333 NA Intergenic Intergenic 231951 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 121-100 chrX 122898397 122898938 + 0.333333 NA Intergenic L1M4|LINE|L1 -285576 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 122.333-43 chr16 47908974 47909560 + 0.333333 NA TTS (NR_110650) TTS (NR_110650) -22137 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LINC02192 - long intergenic non-protein coding RNA 2192 ncRNA 129.667-100 chr7 127355135 127355896 + 0.333333 NA Intergenic Intergenic 37193 NM_176814 168850 Hs.159006 NM_176814 ENSG00000048405 ZNF800 - zinc finger protein 800 protein-coding 146.167-77 chr8 144757703 144758230 + 0.333333 NA Intergenic LTR75B|LTR|ERVL -2435 NM_138367 90987 Hs.534516 NM_138367 ENSG00000198169 ZNF251 - zinc finger protein 251 protein-coding 128.5-8 chr1 206093577 206094136 + 0.333333 NA intron (NM_001369490, intron 1 of 5) intron (NM_001369490, intron 1 of 5) 10261 NM_001369490 440712 Hs.662248 NM_001007544 ENSG00000263961 RHEX C1orf186 regulator of hemoglobinization and erythroid cell expansion protein-coding 113.833-31 chr18 39561323 39561789 + 0.333333 NA intron (NR_024391, intron 2 of 3) intron (NR_024391, intron 2 of 3) 60619 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 119-55 chr2 119122387 119122929 + 0.333333 NA Intergenic MER33|DNA|hAT-Charlie 36093 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 143.333-31 chr2 41043287 41043888 + 0.333333 NA Intergenic L1PA13|LINE|L1 -531152 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 114.834-3 chr13 39066564 39067216 + 0.333333 NA Intergenic L1MB2|LINE|L1 28434 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 118.333-106 chr7 104604084 104604546 + 0.333333 NA intron (NM_199000, intron 1 of 2) MLT-int|LTR|ERVL-MaLR 199777 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 124.667-71 chr22 32714759 32715365 + 0.333333 NA intron (NM_003490, intron 6 of 13) MER103C|DNA|hAT-Charlie -85754 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 127.667-104 chrX 8237155 8237717 + 0.333333 NA Intergenic (ATATTAT)n|Simple_repeat|Simple_repeat -66169 NM_016378 51480 Hs.279737 NM_016378 ENSG00000177504 VCX2 VCX-2r|VCX2R|VCXB variable charge X-linked 2 protein-coding 164.5-17 chr13 89278191 89279007 + 0.333333 NA intron (NR_047025, intron 3 of 3) MER76|LTR|ERVL -41709 NR_131229 105616982 Hs.564527 NR_131229 ENSG00000232225 LINC01047 - long intergenic non-protein coding RNA 1047 ncRNA 120.5-56 chr21 14679730 14680141 + 0.333333 NA Intergenic THE1B|LTR|ERVL-MaLR -36828 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 151.667-57 chr3 107903214 107904042 + 0.333333 NA intron (NR_015394, intron 1 of 2) L1P4|LINE|L1 20423 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 171.333-55 chr5 24987862 24988428 + 0.333333 NA Intergenic MLT1J1|LTR|ERVL-MaLR -147562 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 120.833-56 chr5 18495032 18495554 + 0.333333 NA Intergenic Intergenic 688019 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 216.5-12 chr2 14153524 14154570 + 0.333333 NA Intergenic LTR80A|LTR|ERVL 246911 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 115.333-34 chr14 72489533 72489891 + 0.333333 NA intron (NM_001370294, intron 12 of 14) MLT1C|LTR|ERVL-MaLR -27108 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 119.833-6 chr1 103008323 103008770 + 0.333333 NA intron (NM_001854, intron 14 of 66) intron (NM_001854, intron 14 of 66) 99950 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 120.667-104 chr7 46989027 46989696 + 0.333333 NA Intergenic L2|LINE|L2 -292239 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 151.667-41 chr2 114816473 114817078 + 0.333333 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 16773 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 130.333-75 chr5 59704766 59705384 + 0.333333 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -1372 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 143-39 chr2 112717740 112718340 + 0.333333 NA Intergenic MIR|SINE|MIR -3446 NM_001350494 284958 Hs.589714 NM_001350494 ENSG00000144130 NT5DC4 - 5'-nucleotidase domain containing 4 protein-coding 116.667-106 chr8 33976344 33976786 + 0.333333 NA Intergenic LTR32|LTR|ERVL -376459 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 119.667-65 chr3 113072264 113072852 + 0.333333 NA Intergenic AluSx3|SINE|Alu -52887 NM_001319109 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 114.333-17 chr10 87768934 87769448 + 0.333333 NA intron (NM_001321968, intron 6 of 8) intron (NM_001321968, intron 6 of 8) 49040 NM_001321967 84896 Hs.435948 NM_032810 ENSG00000138138 ATAD1 AFDC1|FNP001|HKPX4|THORASE ATPase family AAA domain containing 1 protein-coding 123-47 chr2 146142721 146143197 + 0.333333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -444098 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 118.167-2 chr1 111124718 111125242 + 0.333333 NA intron (NM_001349881, intron 5 of 9) intron (NM_001349881, intron 5 of 9) -14403 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 139.167-33 chr17 61370991 61371658 + 0.333333 NA intron (NM_001099432, intron 24 of 24) intron (NM_001099432, intron 24 of 24) -3620 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 141-17 chr12 14952292 14953020 + 0.333333 NA intron (NM_001175, intron 1 of 5) intron (NM_001175, intron 1 of 5) -1505 NM_001321422 397 Hs.504877 NM_001175 ENSG00000111348 ARHGDIB D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 Rho GDP dissociation inhibitor beta protein-coding 115.167-23 chr10 127787619 127788142 + 0.333333 NA Intergenic L1M4a1|LINE|L1 50695 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 116.833-9 chr10 120117760 120118214 + 0.333333 NA Intergenic Intergenic 159474 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 128.167-32 chr15 80043960 80044446 + 0.333333 NA Intergenic AluJb|SINE|Alu -15365 NM_001242911 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 123.834-2 chr13 49860504 49861175 + 0.333333 NA Intergenic AluJr4|SINE|Alu -29570 NR_003268 220429 Hs.448219 NR_003268 ENSG00000181358 CTAGE10P - CTAGE family member 10, pseudogene pseudo 132-35 chr16 75032784 75033421 + 0.333333 NA intron (NM_032268, intron 1 of 4) L1MEc|LINE|L1 34078 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 157-53 chr3 3677288 3677800 + 0.333333 NA Intergenic Intergenic -121887 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 123.834-6 chr5 64439337 64440033 + 0.333333 NA Intergenic L1MA7|LINE|L1 -66330 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 139.167-36 chr2 55142751 55143273 + 0.333333 NA Intergenic Intergenic -5181 NM_001321904 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 132.667-44 chr19 29181543 29182213 + 0.333333 NA Intergenic Intergenic 31273 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 136.167-67 chr6 47863058 47863569 + 0.333333 NA Intergenic Arthur1B|DNA|hAT-Tip100 76245 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 148.334-5 chr2 30183580 30184434 + 0.333333 NA Intergenic MLT2C2|LTR|ERVL -3427 NR_145719 109616960 NR_145719 ENSG00000207187 SNORA10B - small nucleolar RNA, H/ACA box 10B snoRNA 115-42 chr2 187740122 187740733 + 0.333333 NA Intergenic Intergenic -185922 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 123.5-34 chr17 60963463 60963991 + 0.333333 NA intron (NM_001330413, intron 14 of 25) AluY|SINE|Alu 285876 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 133.334-3 chr14 43086223 43086997 + 0.333333 NA Intergenic MER115|DNA|hAT-Tip100 1420673 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 130.833-50 chr4 57062177 57062684 + 0.333333 NA intron (NM_001553, intron 1 of 4) intron (NM_001553, intron 1 of 4) -47332 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 118.333-44 chr16 74686462 74687097 + 0.333333 NA intron (NM_152649, intron 4 of 10) intron (NM_152649, intron 4 of 10) 14083 NM_001142497 197259 Hs.119878 NM_152649 ENSG00000168404 MLKL hMLKL mixed lineage kinase domain like pseudokinase protein-coding 124.167-63 chr4 75002844 75003317 + 0.333333 NA intron (NM_015393, intron 1 of 3) intron (NM_015393, intron 1 of 3) -32718 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 135.333-11 chr10 50229924 50230471 + 0.333333 NA intron (NM_001143974, intron 6 of 18) intron (NM_001143974, intron 6 of 18) 18413 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 120.833-60 chr5 152800351 152800852 + 0.333333 NA intron (NR_109877, intron 3 of 4) intron (NR_109877, intron 3 of 4) 171748 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 133-36 chr17 39610386 39610887 + 0.333333 NA Intergenic AluJb|SINE|Alu -2716 NM_006160 4761 Hs.322431 NM_006160 ENSG00000171532 NEUROD2 EIEE72|NDRF|bHLHa1 neuronal differentiation 2 protein-coding 120.5-50 chr2 84819335 84819874 + 0.333333 NA TTS (NM_001370) TTS (NM_001370) 61480 NM_001307978 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 113.833-50 chr22 28344383 28344887 + 0.333333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -115234 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 124.5-68 chr7 32479782 32480226 + 0.333333 NA Intergenic Intergenic 10376 NM_012322 23658 Hs.424908 NM_012322 ENSG00000106355 LSM5 YER146W LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 166.667-68 chr8 130574950 130575691 + 0.333333 NA Intergenic Intergenic -131646 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 122-34 chr2 50643241 50643882 + 0.333333 NA intron (NM_001330093, intron 4 of 22) L1M5|LINE|L1 52701 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 129.5-15 chr11 43052785 43053370 + 0.333333 NA Intergenic Intergenic 216292 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 141.333-44 chr18 14104313 14104816 + 0.333333 NA 3' UTR (NM_145287, exon 3 of 3) 3' UTR (NM_145287, exon 3 of 3) 27871 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 139.833-12 chr11 59750591 59751121 + 0.333333 NA Intergenic Intergenic 2044 NR_045005 81343 Hs.741974 NR_045005 ENSG00000255538 OR10V2P - olfactory receptor family 10 subfamily V member 2 pseudogene pseudo 117.667-108 chr5 154725063 154725542 + 0.333333 NA intron (NM_001367717, intron 1 of 18) AluSg7|SINE|Alu 12459 NM_015315 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 152-44 chr7 81395494 81396002 + 0.333333 NA Intergenic FRAM|SINE|Alu 166071 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 157-23 chr14 47686757 47687365 + 0.333333 NA Intergenic L1MA4A|LINE|L1 -12107 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 118.667-124 chr9 131633281 131633773 + 0.333333 NA intron (NM_198679, intron 5 of 23) intron (NM_198679, intron 5 of 23) 76315 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 114-18 chr10 93176761 93177200 + 0.333333 NA Intergenic AluSp|SINE|Alu 103087 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 122.833-29 chr14 104766453 104766860 + 0.333333 NA Intergenic Intergenic 13509 NM_021709 10572 Hs.112058 NM_006427 ENSG00000184990 SIVA1 CD27BP|SIVA|Siva-1|Siva-2 SIVA1 apoptosis inducing factor protein-coding 160-24 chr12 106943177 106944011 + 0.333333 NA Intergenic AluY|SINE|Alu -12128 NM_001319663 90488 Hs.257664 NM_152261 ENSG00000151135 TMEM263 C12orf23 transmembrane protein 263 protein-coding 135.333-43 chr2 146718706 146719404 + 0.333333 NA Intergenic MLT1B|LTR|ERVL-MaLR 131998 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 118.167-9 chr10 85554278 85554839 + 0.333333 NA Intergenic L1MC2|LINE|L1 -23173 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 116.167-57 chr5 4103883 4104433 + 0.333333 NA Intergenic Intergenic 508326 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 165.5 chr1 92323136 92323709 + 0.333333 NA intron (NM_024813, intron 7 of 12) (TTTCTA)n|Simple_repeat|Simple_repeat 24363 NM_024813 79871 Hs.444421 NM_024813 ENSG00000122484 RPAP2 C1orf82|Rtr1 RNA polymerase II associated protein 2 protein-coding 137.667-27 chr14 49327312 49327932 + 0.333333 NA Intergenic THE1D-int|LTR|ERVL-MaLR 258758 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 117.334 chr10 122972128 122972778 + 0.333333 NA Intergenic L1ME3F|LINE|L1 -7948 NM_001363531 118672 Hs.281004 NM_153336 ENSG00000179988 PSTK C10orf89 phosphoseryl-tRNA kinase protein-coding 113.833-12 chr11 119286557 119287074 + 0.333333 NA intron (NM_005188, intron 11 of 15) L2a|LINE|L2 26197 NR_106814 102465453 NR_106814 ENSG00000284148 MIR6756 hsa-mir-6756 microRNA 6756 ncRNA 129.834-7 chr6 19521793 19522549 + 0.333333 NA Intergenic Intergenic 72350 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 163.334-3 chr3 94639721 94640605 + 0.333333 NA Intergenic L1PB1|LINE|L1 -298100 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 115-79 chr7 94543184 94543760 + 0.333333 NA intron (NM_001363428, intron 10 of 17) AluSx1|SINE|Alu 33663 NM_001363426 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 115.833-5 chr10 33662398 33662972 + 0.333333 NA Intergenic Intergenic 109995 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 124.5-85 chrX 101301563 101302025 + 0.333333 NA Intergenic L1M3f|LINE|L1 -8711 NM_024885 54457 Hs.223806 NM_024885 ENSG00000102387 TAF7L CT40|TAF2Q TATA-box binding protein associated factor 7 like protein-coding 154.167-27 chr17 69676948 69677522 + 0.333333 NA intron (NR_109972, intron 3 of 4) L1MC5|LINE|L1 83248 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 130.5-82 chr9 87485236 87485821 + 0.333333 NA Intergenic AluJo|SINE|Alu -11700 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 163-22 chr16 72656482 72657129 + 0.333333 NA intron (NR_159372, intron 1 of 7) intron (NR_159372, intron 1 of 7) 8165 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 125.167-77 chr8 116420654 116421282 + 0.333333 NA Intergenic L1ME1|LINE|L1 -95909 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 154.5-51 chr4 54008865 54009351 + 0.333333 NA TTS (NM_012110) TTS (NM_012110) -21826 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 144.167-13 chr10 102383517 102383991 + 0.333333 NA TTS (NM_004193) TTS (NM_004193) -10356 NM_001322935 4791 Hs.73090 NM_002502 ENSG00000077150 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52 nuclear factor kappa B subunit 2 protein-coding 131.167-22 chr14 34916274 34916770 + 0.333333 NA TTS (NR_151701) TTS (NR_151701) -23400 NR_002937 280655 Hs.639271 NR_002937 IGBP1P1 C14orf19 immunoglobulin (CD79A) binding protein 1 pseudogene 1 pseudo 193.5-44 chr5 41601735 41602520 + 0.333333 NA Intergenic Intergenic -91526 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 120.167-12 chr10 84808433 84809131 + 0.333333 NA Intergenic HUERS-P1-int|LTR|ERV1 383613 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 134-22 chr10 124408121 124408900 + 0.333333 NA intron (NM_001322974, intron 3 of 9) intron (NM_001322974, intron 3 of 9) 10413 NM_001322969 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 116.5-29 chr17 78216305 78216735 + 0.333333 NA intron (NM_001012271, intron 3 of 4) intron (NM_001012271, intron 3 of 4) 2267 NM_001012271 332 Hs.744872 NM_001168 ENSG00000089685 BIRC5 API4|EPR-1 baculoviral IAP repeat containing 5 protein-coding 117.167-49 chr2 185237033 185237519 + 0.333333 NA Intergenic L1MA9|LINE|L1 -70204 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 154.167-35 chr2 217772691 217773450 + 0.333333 NA Intergenic MSTA|LTR|ERVL-MaLR -16477 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 119.833-43 chr2 102077464 102077957 + 0.333333 NA intron (NM_001320978, intron 1 of 11) L1MEc|LINE|L1 7320 NM_001320978 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 124.5-20 chr14 56453345 56453762 + 0.333333 NA Intergenic Arthur1|DNA|hAT-Tip100 -60778 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 140.833-68 chrX 139604733 139605273 + 0.333333 NA intron (NM_001099855, intron 16 of 27) intron (NM_001099855, intron 16 of 27) 37838 NM_001171877 4168 Hs.387262 NM_005369 ENSG00000101977 MCF2 ARHGEF21|DBL MCF.2 cell line derived transforming sequence protein-coding 117.5-11 chr12 954756 955459 + 0.333333 NA intron (NM_001297419, intron 1 of 11) intron (NM_001297419, intron 1 of 11) -5385 NR_123713 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 136.167-82 chrX 54318020 54318834 + 0.333333 NA intron (NM_001002838, intron 2 of 22) intron (NM_001002838, intron 2 of 22) 39578 NM_020922 65267 Hs.92423 NM_020922 ENSG00000196632 WNK3 PRKWNK3 WNK lysine deficient protein kinase 3 protein-coding 183.333-10 chr10 123103547 123104228 + 0.333333 NA Intergenic Intergenic -32083 NM_001105574 340784 Hs.531194 NM_001105574 ENSG00000188620 HMX3 NKX-5.1|NKX5.1|Nkx5-1 H6 family homeobox 3 protein-coding 115.333-85 chr5 66455256 66455779 + 0.333333 NA Intergenic Intergenic 56087 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 120.667-35 chr13 57801673 57802241 + 0.333333 NA Intergenic L1MEf|LINE|L1 170213 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 115.333-32 chr14 62543583 62544072 + 0.333333 NA Intergenic L1ME2z|LINE|L1 -403854 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 147.167-28 chr19 32842080 32842824 + 0.333333 NA intron (NM_001126335, intron 10 of 12) intron (NM_001126335, intron 10 of 12) 27315 NM_001243036 11136 Hs.743345 NM_014270 ENSG00000021488 SLC7A9 BAT1|CSNU3 solute carrier family 7 member 9 protein-coding 171-52 chr6 66695104 66695739 + 0.333333 NA Intergenic Charlie25|DNA|hAT-Charlie 907542 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 114.833 chr1 21889156 21889743 + 0.333333 NA intron (NM_005529, intron 6 of 96) intron (NM_005529, intron 6 of 96) 47861 NM_001291860 3339 Hs.562227 NM_005529 ENSG00000142798 HSPG2 HSPG|PLC|PRCAN|SJA|SJS|SJS1 heparan sulfate proteoglycan 2 protein-coding 121.5-68 chr3 105712590 105713181 + 0.333333 NA intron (NR_135808, intron 10 of 19) intron (NR_135808, intron 10 of 19) 154706 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 130-76 chr4 77066300 77067016 + 0.333333 NA intron (NM_006835, intron 1 of 6) intron (NM_006835, intron 1 of 6) 8252 NM_001348133 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 145.167-61 chr6 21733328 21734026 + 0.333333 NA intron (NR_015410, intron 2 of 11) intron (NR_015410, intron 2 of 11) 67264 NR_015410 401237 Hs.712707 NR_015410 CASC15 CANT|LINC00340|lnc-SOX4-1 cancer susceptibility 15 ncRNA 135-15 chr11 18837284 18838086 + 0.333333 NA Intergenic L1PA10|LINE|L1 -44964 NM_001278236 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 116.167-3 chr1 90589386 90589875 + 0.333333 NA Intergenic THE1A|LTR|ERVL-MaLR -68120 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 130.5-53 chr3 127512036 127512466 + 0.333333 NA intron (NR_125397, intron 5 of 6) L1ME3B|LINE|L1 25529 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 117-27 chr14 33001198 33001781 + 0.333333 NA intron (NM_001165893, intron 1 of 10) intron (NM_001165893, intron 1 of 10) 62610 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 119.667-6 chr1 218580995 218581429 + 0.333333 NA intron (NR_031644, intron 2 of 6) MER21C|LTR|ERVL 71117 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 117.333-63 chr21 38733881 38734270 + 0.333333 NA Intergenic Intergenic 34899 NR_027066 400866 Hs.278704 NM_001001789 ENSG00000223806 LINC00114 C21orf24|NCRNA00114 long intergenic non-protein coding RNA 114 ncRNA 129.5-25 chr15 57606808 57607387 + 0.333333 NA intron (NM_001018100, intron 2 of 12) intron (NM_001018100, intron 2 of 12) 15193 NM_152451 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 147.667-42 chr3 26029392 26030122 + 0.333333 NA Intergenic Intergenic -156062 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 123.334-4 chr14 70712000 70712734 + 0.333333 NA TTS (NR_125769) TTS (NR_125769) 13669 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 171.333-69 chr8 139390839 139391393 + 0.333333 NA Intergenic MER5B|DNA|hAT-Charlie 312007 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 116.667-12 chr10 27215918 27216607 + 0.333333 NA intron (NM_001352582, intron 6 of 11) AluSx|SINE|Alu 24224 NM_001301252 91452 Hs.530597 NM_145698 ENSG00000107897 ACBD5 - acyl-CoA binding domain containing 5 protein-coding 162.167-54 chr8 123492481 123493103 + 0.333333 NA Intergenic Intergenic 39351 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 134.333-96 chr6 65064150 65064821 + 0.333333 NA intron (NM_001292009, intron 12 of 43) (TA)n|Simple_repeat|Simple_repeat -236933 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 116.333-94 chr6 84813412 84813986 + 0.333333 NA Intergenic Intergenic -49101 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 113.667-110 chr6 75408035 75408621 + 0.333333 NA intron (NR_125859, intron 3 of 8) intron (NR_125859, intron 3 of 8) -20079 NR_039670 100616389 NR_039670 ENSG00000263533 MIR4463 - microRNA 4463 ncRNA 145.334-2 chr14 55899805 55900607 + 0.333333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -103532 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 120.333-109 chr7 25537829 25538406 + 0.333333 NA Intergenic MLT1F|LTR|ERVL-MaLR 125023 NR_157823 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 170.167-29 chr2 77341076 77341720 + 0.333333 NA intron (NR_146416, intron 1 of 1) L2c|LINE|L2 180978 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 140.833-47 chr4 117650012 117650733 + 0.333333 NA intron (NR_125757, intron 2 of 3) L1PA16|LINE|L1 -184029 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 118-51 chr18 70884521 70885221 + 0.333333 NA Intergenic Intergenic -233917 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 118.5-37 chr16 22666559 22667218 + 0.333333 NA Intergenic AluSc|SINE|Alu 121190 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 123.333-42 chr15 69133960 69134481 + 0.333333 NA Intergenic Intergenic -26377 NM_001324091 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 127.333-124 chrX 116364791 116365291 + 0.333333 NA Intergenic L1PA10|LINE|L1 -71565 NM_007231 11254 Hs.522109 NM_007231 ENSG00000268104 SLC6A14 BMIQ11 solute carrier family 6 member 14 protein-coding 134.167-59 chr4 29660127 29660822 + 0.333333 NA Intergenic Intergenic 446182 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 134.667-49 chr2 81562453 81563015 + 0.333333 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat -95788 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 120.5-57 chr21 43874735 43875164 + 0.333333 NA intron (NM_001369878, intron 1 of 8) MER2B|DNA|TcMar-Tigger 9726 NM_020132 56894 Hs.248785 NM_020132 ENSG00000160216 AGPAT3 1-AGPAT 3|LPAAT-GAMMA1|LPAAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 141.167-20 chr12 52127986 52128671 + 0.333333 NA Intergenic L1MA10|LINE|L1 34759 NR_120440 26628 Hs.524431 NR_120438 ENSG00000257542 OR7E47P OR7E141 olfactory receptor family 7 subfamily E member 47 pseudogene pseudo 174-2 chr1 41562932 41563517 + 0.333333 NA intron (NM_024503, intron 5 of 8) AluSx1|SINE|Alu -78541 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 151.667-28 chr17 70164166 70164912 + 0.333333 NA Intergenic (TCCT)n|Simple_repeat|Simple_repeat 4863 NR_036534 400617 Hs.225661 NR_036534 ENSG00000267365 KCNJ2-AS1 - KCNJ2 antisense RNA 1 ncRNA 131.667-43 chr15 71362823 71363348 + 0.333333 NA intron (NM_024817, intron 5 of 16) MER30|DNA|hAT-Charlie -174026 NR_120348 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 116.333-101 chr8 76839911 76840501 + 0.333333 NA intron (NM_024721, intron 5 of 10) intron (NM_024721, intron 5 of 10) 126644 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 115.5-78 chr5 77991794 77992261 + 0.333333 NA Intergenic Intergenic 33780 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 125.667-85 chr4 57155395 57156024 + 0.333333 NA intron (NR_034081, intron 1 of 4) MER34A|LTR|ERV1 -45324 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 127.167-59 chr3 124226841 124227317 + 0.333333 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 94150 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 117.5-59 chr5 109375865 109376474 + 0.333333 NA intron (NM_014819, intron 4 of 9) intron (NM_014819, intron 4 of 9) 33805 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 113.5-26 chr12 42940460 42941020 + 0.333333 NA Intergenic L1PA10|LINE|L1 -214575 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 132.833-54 chr6 83083947 83084471 + 0.333333 NA intron (NM_015018, intron 1 of 38) Tigger3a|DNA|TcMar-Tigger 16543 NM_001199942 23033 Hs.520246 NM_015018 ENSG00000083097 DOP1A DOP1|DOPEY1|KIAA1117|dJ202D23.2 DOP1 leucine zipper like protein A protein-coding 113.667-40 chr14 71286571 71287197 + 0.333333 NA Intergenic LTR81B|LTR|Gypsy -33592 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 154.667-34 chr2 26120058 26120900 + 0.333333 NA intron (NM_016131, intron 3 of 5) intron (NM_016131, intron 3 of 5) -52609 NM_001168241 150946 Hs.187912 NM_001168241 ENSG00000157833 GAREM2 FAM59B|GAREML GRB2 associated regulator of MAPK1 subtype 2 protein-coding 115.833-66 chr6 88387450 88387945 + 0.333333 NA Intergenic Intergenic 151672 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 122.333-76 chr3 190279451 190280035 + 0.333333 NA Intergenic MamRep1527|LTR|LTR 42703 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 117.833-49 chr3 40147540 40148058 + 0.333333 NA intron (NM_001284426, intron 1 of 14) intron (NM_001284426, intron 1 of 14) 47788 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 113.167-70 chr6 154864038 154864588 + 0.333333 NA Intergenic Intergenic 10953 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 150-62 chr4 130967608 130968305 + 0.333333 NA Intergenic Intergenic 591595 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 139.333-73 chr5 39092681 39093274 + 0.333333 NA Intergenic MER68|LTR|ERVL -18578 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 119.667-97 chr8 60189152 60189769 + 0.333333 NA non-coding (NR_135821, exon 10 of 10) non-coding (NR_135821, exon 10 of 10) 91940 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 135-35 chr2 14002636 14003075 + 0.333333 NA Intergenic L1MA9|LINE|L1 398103 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 116.333-23 chr11 113393531 113394112 + 0.333333 NA intron (NM_178510, intron 2 of 7) intron (NM_178510, intron 2 of 7) 6042 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 118.667-100 chr6 53183493 53184187 + 0.333333 NA Intergenic AluJo|SINE|Alu -34999 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 147.167-16 chr11 87038362 87038897 + 0.333333 NA intron (NR_033149, intron 1 of 13) (T)n|Simple_repeat|Simple_repeat 695 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 123.667-101 chr7 66171064 66171602 + 0.333333 NA Intergenic AluJb|SINE|Alu -34001 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 122-76 chr6 64559790 64560247 + 0.333333 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) -741400 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 113.833-20 chr14 69300519 69301019 + 0.333333 NA intron (NM_020692, intron 1 of 15) intron (NM_020692, intron 1 of 15) 40611 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 117.333-70 chr3 76250462 76250850 + 0.333333 NA Intergenic MIR|SINE|MIR -465107 NM_001290210 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 134.333-85 chr4 111284160 111284784 + 0.333333 NA Intergenic L1ME3Cz|LINE|L1 -423825 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 134.333-34 chr14 54189783 54190253 + 0.333333 NA Intergenic Intergenic -206850 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 133.833-72 chr7 35986472 35987018 + 0.333333 NA Intergenic MIRb|SINE|MIR -108565 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 128-79 chr6 43962284 43962831 + 0.333333 NA Intergenic AluSq|SINE|Alu -38028 NR_160955 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 ncRNA 141.667-97 chr6 145732696 145733250 + 0.333333 NA intron (NM_001360071, intron 1 of 4) MIR|SINE|MIR -1896 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 138.333-37 chr15 59690713 59691128 + 0.333333 NA Intergenic Intergenic -1600 NM_001368057 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 138.167-42 chr2 86208331 86208806 + 0.333333 NA intron (NM_016622, intron 3 of 3) AluSz|SINE|Alu 9111 NM_016622 51318 Hs.433439 NM_016622 ENSG00000132313 MRPL35 L35mt|MRP-L35 mitochondrial ribosomal protein L35 protein-coding 141.5-90 chrX 8984640 8985297 + 0.333333 NA Intergenic LOR1-int|LTR|ERV1 49159 NM_205849 171483 Hs.733351 NM_173696 ENSG00000177138 FAM9B TEX39B family with sequence similarity 9 member B protein-coding 127.833-40 chr2 127824913 127825296 + 0.333333 NA Intergenic Intergenic -13917 NM_001006622 55339 Hs.554831 NM_018383 ENSG00000136709 WDR33 NET14|WDC146 WD repeat domain 33 protein-coding 156-26 chr14 49659258 49659852 + 0.333333 NA intron (NM_001348385, intron 10 of 18) Tigger3b|DNA|TcMar-Tigger -24325 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 114.167-9 chr10 113927826 113928340 + 0.333333 NA Intergenic MamRep434|DNA|TcMar-Tigger 73422 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 121.833-44 chr3 7391622 7392097 + 0.333333 NA intron (NM_000844, intron 4 of 9) L1PA17|LINE|L1 143425 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 125.833-47 chr2 213933546 213934165 + 0.333333 NA intron (NR_047660, intron 11 of 14) MLT1J-int|LTR|ERVL-MaLR 175788 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 113.667-16 chr10 32571846 32572463 + 0.333333 NA intron (NM_001321115, intron 17 of 43) intron (NM_001321115, intron 17 of 43) 126014 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 141.167-75 chr8 121014283 121014954 + 0.333333 NA Intergenic Intergenic -202572 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 123.167-57 chr21 15581819 15582451 + 0.333333 NA Intergenic HERVL-int|LTR|ERVL -147799 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 137.667-61 chr20 20463515 20464129 + 0.333333 NA intron (NM_020343, intron 37 of 39) intron (NM_020343, intron 37 of 39) 95718 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 136.667-108 chr8 99639011 99639599 + 0.333333 NA intron (NM_017890, intron 33 of 61) intron (NM_017890, intron 33 of 61) -102444 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 162.667-61 chr5 30059353 30060090 + 0.333333 NA Intergenic L1MC3|LINE|L1 179161 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 170-25 chr16 24593322 24593890 + 0.333333 NA Intergenic AluSz|SINE|Alu -16599 NM_001351850 27327 Hs.655057 NM_014494 ENSG00000090905 TNRC6A CAGH26|FAME6|GW1|GW182|TNRC6 trinucleotide repeat containing adaptor 6A protein-coding 139.334-7 chr4 74850308 74851079 + 0.333333 NA Intergenic Tigger1|DNA|TcMar-Tigger -56170 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 114.5-81 chr6 129516879 129517457 + 0.333333 NA TTS (NM_001079823) TTS (NM_001079823) 193009 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 284.167-17 chr8 59158894 59160150 + 0.333333 NA Intergenic ERVL-B4-int|LTR|ERVL 40312 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 153.167-24 chr2 57338379 57339282 + 0.333333 NA Intergenic Intergenic -568821 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 126-9 chr10 15089626 15090323 + 0.333333 NA Intergenic Intergenic -1198 NM_001039844 414149 NM_001039844 ENSG00000176244 ACBD7 bA455B2.2 acyl-CoA binding domain containing 7 protein-coding 139.167-34 chr18 60143902 60144425 + 0.333333 NA Intergenic AluSx|SINE|Alu 228612 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 117.667-74 chr21 21493444 21493809 + 0.333333 NA intron (NM_001352592, intron 16 of 18) L1MC1|LINE|L1 243693 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 121-99 chrX 88793431 88793990 + 0.333333 NA Intergenic L1PA16|LINE|L1 46485 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 143.167-5 chr1 119775613 119776106 + 0.333333 NA Intergenic L1MEh|LINE|L1 -6927 NM_005518 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 118-106 chr6 52207191 52207858 + 0.333333 NA Intergenic Intergenic 21149 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 126.834-7 chr9 26023207 26023934 + 0.333333 NA Intergenic Intergenic -43105 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 113.333-10 chr1 189722454 189722930 + 0.333333 NA Intergenic MER4E|LTR|ERV1 753318 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 161.667-83 chr8 61246048 61246990 + 0.333333 NA Intergenic L1MEg|LINE|L1 -41451 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 170.333-8 chr1 220479235 220479907 + 0.333333 NA Intergenic Intergenic -48565 NM_018650 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 122.833-16 chr11 119269633 119270231 + 0.333333 NA intron (NM_005188, intron 2 of 15) AluY|SINE|Alu 43080 NR_106814 102465453 NR_106814 ENSG00000284148 MIR6756 hsa-mir-6756 microRNA 6756 ncRNA 128.833-26 chr13 71908258 71908920 + 0.333333 NA Intergenic L2b|LINE|L2 -41385 NM_001366712 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 137.833-12 chr13 97231813 97232370 + 0.333333 NA intron (NM_144778, intron 1 of 8) intron (NM_144778, intron 1 of 8) 9758 NM_144778 10150 Hs.657347 NM_144778 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind like splicing regulator 2 protein-coding 127-7 chr10 54162858 54163597 + 0.333333 NA intron (NM_001354411, intron 14 of 34) MSTA|LTR|ERVL-MaLR -323003 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 128.5-27 chr16 35769108 35769661 + 0.333333 NA Intergenic ALR/Alpha|Satellite|centr 22832 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 120.333-62 chr2 224940846 224941345 + 0.333333 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) 5954 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 123.333-53 chr2 100850186 100850679 + 0.333333 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 30293 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 137.834 chr10 95881569 95882304 + 0.333333 NA intron (NR_038444, intron 2 of 5) AluY|SINE|Alu -26029 NM_001349008 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 140.5-76 chr8 98568986 98569687 + 0.333333 NA intron (NM_006281, intron 8 of 10) HAL1|LINE|L1 142378 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 154.667-37 chr2 67924450 67925253 + 0.333333 NA Intergenic L1M4|LINE|L1 -99289 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 183.834-2 chr2 219315359 219316431 + 0.333333 NA Intergenic L1M5|LINE|L1 -6494 NM_001199763 5798 Hs.89655 NM_002846 ENSG00000054356 PTPRN IA-2|IA-2/PTP|IA2|ICA512|R-PTP-N protein tyrosine phosphatase receptor type N protein-coding 197-5 chr10 88258749 88259440 + 0.333333 NA Intergenic Intergenic 324224 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 125.333-49 chr14 87910455 87911046 + 0.333333 NA Intergenic L1PA13|LINE|L1 82432 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 116.667-29 chr13 69390982 69391526 + 0.333333 NA Intergenic Intergenic 168908 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 119.333-53 chr2 95244620 95245206 + 0.333333 NA Intergenic L1PA16|LINE|L1 -29536 NM_001321070 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 138.333-31 chr14 69949617 69950295 + 0.333333 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) -28177 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 129.833-12 chr11 129883379 129883976 + 0.333333 NA intron (NM_001143835, intron 8 of 26) intron (NM_001143835, intron 8 of 26) 9332 NM_006165 4798 Hs.530539 NM_006165 ENSG00000170322 NFRKB INO80G nuclear factor related to kappaB binding protein protein-coding 124-16 chr10 72225484 72225963 + 0.333333 NA intron (NM_001242548, intron 2 of 2) AluSc|SINE|Alu -8589 NM_001369085 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 117-39 chr16 61732152 61732722 + 0.333333 NA intron (NM_001796, intron 8 of 11) L1M4b|LINE|L1 304001 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 120.5-31 chr14 68757723 68758372 + 0.333333 NA Intergenic Intergenic 35867 NM_001244698 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 129.333-65 chr4 42599112 42599718 + 0.333333 NA intron (NM_001105529, intron 6 of 35) intron (NM_001105529, intron 6 of 35) 57690 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 142.667-97 chr8 66783338 66783860 + 0.333333 NA intron (NM_013257, intron 1 of 16) AluJr|SINE|Alu 8394 NM_170709 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 113.333-46 chr17 16601887 16602443 + 0.333333 NA Intergenic L1MB3|LINE|L1 -32953 NM_001346169 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 125.5-26 chr16 84895768 84896214 + 0.333333 NA intron (NM_031476, intron 14 of 14) intron (NM_031476, intron 14 of 14) 76006 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 144-64 chr6 88206098 88206792 + 0.333333 NA Intergenic L1MEh|LINE|L1 -39096 NM_001370546 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 123.167-65 chr3 132586986 132587608 + 0.333333 NA intron (NM_032169, intron 13 of 19) L1MEb|LINE|L1 -9973 NM_016557 51554 Hs.310512 NM_016557 ENSG00000129048 ACKR4 CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1 atypical chemokine receptor 4 protein-coding 163-37 chr22 27425446 27426188 + 0.333333 NA Intergenic Intergenic 115166 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 120.667-37 chr14 48092647 48093224 + 0.333333 NA Intergenic L1ME3E|LINE|L1 -297921 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 113.5-62 chr3 108548308 108548711 + 0.333333 NA Intergenic MER58A|DNA|hAT-Charlie -19187 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 141.5-88 chr9 116206731 116207376 + 0.333333 NA intron (NM_002581, intron 2 of 21) intron (NM_002581, intron 2 of 21) 53262 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 120.667-109 chr7 96754738 96755196 + 0.333333 NA Intergenic L2a|LINE|L2 -45076 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 144.5-18 chr12 469028 469621 + 0.333333 NA intron (NM_173593, intron 1 of 19) MIRb|SINE|MIR 9385 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 146.167-72 chr8 26896674 26897202 + 0.333333 NA Intergenic Intergenic -29660 NM_000680 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 120.167-30 chr17 76631840 76632270 + 0.333333 NA intron (NR_110309, intron 1 of 7) intron (NR_110309, intron 1 of 7) 11702 NR_110309 55808 Hs.105352 NM_018414 ENSG00000070526 ST6GALNAC1 HSY11339|SIAT7A|ST6GalNAcI|STYI ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 protein-coding 130-16 chr10 61536796 61537273 + 0.333333 NA Intergenic L1M5|LINE|L1 56993 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 134.333-2 chr1 56845721 56846165 + 0.333333 NA Intergenic Intergenic -8827 NM_000562 731 Hs.93210 NM_000562 ENSG00000157131 C8A - complement C8 alpha chain protein-coding 113.667-125 chr8 84321783 84322258 + 0.333333 NA intron (NM_001354320, intron 2 of 9) L1MCb|LINE|L1 -93464 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 117.667-44 chr14_GL000225v1_random 130197 130668 + 0.333333 NA NA BSR/Beta|Satellite|Satellite NA NA 132.333-100 chr8 29784075 29784554 + 0.333333 NA intron (NR_125815, intron 1 of 3) MLT1J2|LTR|ERVL-MaLR 36005 NR_125815 101929450 Hs.512440 NR_125814 ENSG00000253490 LINC02099 - long intergenic non-protein coding RNA 2099 ncRNA 135.5-57 chr3 156134017 156134534 + 0.333333 NA intron (NM_172160, intron 1 of 13) Tigger15a|DNA|TcMar-Tigger -8687 NM_003471 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 119.5-99 chr7 80806341 80806986 + 0.333333 NA intron (NM_006379, intron 6 of 17) intron (NM_006379, intron 6 of 17) 112388 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 133.333-4 chr1 119333036 119333483 + 0.333333 NA intron (NR_146623, intron 2 of 3) intron (NR_146623, intron 2 of 3) 5007 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 141-52 chr20 55237357 55237856 + 0.333333 NA Intergenic Intergenic -185437 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 141.5-66 chr4 33506455 33507263 + 0.333333 NA Intergenic THE1C-int|LTR|ERVL-MaLR 533034 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 114.333-91 chr4 2547624 2548021 + 0.333333 NA intron (NM_001366318, intron 1 of 20) AluSz|SINE|Alu 11175 NM_001366318 8603 Hs.652364 NM_003704 ENSG00000125386 FAM193A C4orf8|RES4-22 family with sequence similarity 193 member A protein-coding 130.667-101 chrX 53176218 53176790 + 0.333333 NA non-coding (NR_148672, exon 27 of 27) non-coding (NR_148672, exon 27 of 27) 18984 NR_106955 102465539 NR_106955 ENSG00000276575 MIR6895 hsa-mir-6895 microRNA 6895 ncRNA 115-14 chr10 77538433 77538971 + 0.333333 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 99106 NM_001322829 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 125.833-68 chr4 174992843 174993445 + 0.333333 NA Intergenic MLT2A1|LTR|ERVL 74786 NM_001130705 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 139.833-29 chr16 72953449 72954071 + 0.333333 NA intron (NM_001164766, intron 1 of 8) AluJb|SINE|Alu 94368 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 117-10 chr1 186287314 186287754 + 0.333333 NA Intergenic Intergenic -8739 NM_001127708 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 154-86 chr8 142706485 142707040 + 0.333333 NA non-coding (NR_038925, exon 3 of 3) non-coding (NR_038925, exon 3 of 3) 6651 NM_001160354 54742 Hs.69517 NM_017527 ENSG00000160886 LY6K CT97|HSJ001348|URLC10|ly-6K lymphocyte antigen 6 family member K protein-coding 117.5-63 chr6 54152850 54153307 + 0.333333 NA intron (NM_001281746, intron 5 of 11) intron (NM_001281746, intron 5 of 11) 41635 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 131.833-35 chr2 149573903 149574492 + 0.333333 NA intron (NM_015702, intron 6 of 7) intron (NM_015702, intron 6 of 7) -13161 NR_110240 101929231 Hs.5324 NR_110240 ENSG00000231969 LOC101929231 - uncharacterized LOC101929231 ncRNA 148.334-7 chr5 44992833 44993621 + 0.333333 NA Intergenic MLT1K|LTR|ERVL-MaLR 184280 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 130.5-15 chr11 85226306 85226805 + 0.333333 NA intron (NM_001142699, intron 4 of 27) AluJo|SINE|Alu -303134 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 140.5-54 chr4 96113709 96114390 + 0.333333 NA Intergenic Intergenic -196654 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 142.833-64 chr6 25513675 25514318 + 0.333333 NA intron (NM_001173977, intron 20 of 36) intron (NM_001173977, intron 20 of 36) -138219 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 121-16 chr11 65600405 65600886 + 0.333333 NA intron (NM_002419, intron 8 of 9) intron (NM_002419, intron 8 of 9) -4649 NM_005714 10089 Hs.175218 NM_005714 ENSG00000173338 KCNK7 K2p7.1|TWIK3 potassium two pore domain channel subfamily K member 7 protein-coding 126.833-45 chr3 73362982 73363541 + 0.333333 NA Intergenic MLT1C|LTR|ERVL-MaLR 70734 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 122-97 chrX 43227260 43227795 + 0.333333 NA TTS (NR_110387) TTS (NR_110387) 50533 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 145.667-86 chr5 164085141 164085766 + 0.333333 NA Intergenic Intergenic 381949 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 122.333-12 chr10 72594423 72595066 + 0.333333 NA intron (NM_006077, intron 1 of 11) AluJr|SINE|Alu 31335 NM_001195518 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 146.834-5 chr6 38474820 38475627 + 0.333333 NA intron (NM_001172418, intron 5 of 10) L1ME4a|LINE|L1 -6373 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 131.833-34 chr2 125651729 125652248 + 0.333333 NA Intergenic L2c|LINE|L2 465997 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 133.333-70 chr3 664297 664994 + 0.333333 NA intron (NR_110118, intron 1 of 3) intron (NR_110118, intron 1 of 3) 72540 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 138.333-49 chr17 49632287 49632850 + 0.333333 NA intron (NM_001007228, intron 1 of 9) AluSq2|SINE|Alu -5979 NM_001370732 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 134.667-78 chr5 7754488 7755024 + 0.333333 NA intron (NM_020546, intron 15 of 24) AluSx3|SINE|Alu 96377 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 190.334 chr2 125075128 125076161 + 0.333333 NA Intergenic L1MB7|LINE|L1 1042341 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 173.667-16 chr13 94493916 94494793 + 0.333333 NA intron (NM_001322184, intron 1 of 8) intron (NM_001322184, intron 1 of 8) -14672 NM_001129889 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding